PSIBLAST 2.11.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Stephen F.
Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005)
"Protein database searches using compositionally adjusted
substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: uniprot_sprot.fasta
           571,282 sequences; 206,678,396 total letters

Results from round 1


Query= sp|Q92499|DDX1_HUMAN ATP-dependent RNA helicase DDX1 OS=Homo sapiens
OX=9606 GN=DDX1 PE=1 SV=2

Length=740
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

sp|Q92499|DDX1_HUMAN ATP-dependent RNA helicase DDX1 OS=Homo sapi...  1542    0.0   
sp|Q4R7L5|DDX1_MACFA ATP-dependent RNA helicase DDX1 OS=Macaca fa...  1538    0.0   
sp|Q5NVJ8|DDX1_PONAB ATP-dependent RNA helicase DDX1 OS=Pongo abe...  1537    0.0   
sp|Q641Y8|DDX1_RAT ATP-dependent RNA helicase DDX1 OS=Rattus norv...  1518    0.0   
sp|Q91VR5|DDX1_MOUSE ATP-dependent RNA helicase DDX1 OS=Mus muscu...  1516    0.0   
sp|Q0IIK5|DDX1_BOVIN ATP-dependent RNA helicase DDX1 OS=Bos tauru...  1513    0.0   
sp|Q90WU3|DDX1_CHICK ATP-dependent RNA helicase DDX1 OS=Gallus ga...  1417    0.0   
sp|Q5XH91|DDX1_XENTR ATP-dependent RNA helicase DDX1 OS=Xenopus t...  1359    0.0   
sp|A2VD92|DDX1_XENLA ATP-dependent RNA helicase DDX1 OS=Xenopus l...  1352    0.0   
sp|Q9VNV3|DDX1_DROME ATP-dependent RNA helicase Ddx1 OS=Drosophil...  876     0.0   
sp|Q55CP6|DDX1_DICDI Probable ATP-dependent RNA helicase ddx1 OS=...  610     0.0   
sp|Q24731|DDX1_DROVI ATP-dependent RNA helicase Ddx1 (Fragment) O...  447     2e-150
sp|P25888|RHLE_ECOLI ATP-dependent RNA helicase RhlE OS=Escherich...  180     3e-48 
sp|Q0ILZ4|RH9_ORYSJ DEAD-box ATP-dependent RNA helicase 9 OS=Oryz...  168     8e-43 
sp|Q19614|SLFL2_CAEEL Schlafen-like protein 2 OS=Caenorhabditis e...  163     1e-42 
sp|A0A1D6LAB7|RH3B_MAIZE DEAD-box ATP-dependent RNA helicase 3B, ...  168     2e-42 
sp|P27639|IF4A_CAEEL Eukaryotic initiation factor 4A OS=Caenorhab...  161     3e-42 
sp|A0A1D6GDY8|RH3A_MAIZE DEAD-box ATP-dependent RNA helicase 3A, ...  166     7e-42 
sp|Q0DM51|RH3_ORYSJ DEAD-box ATP-dependent RNA helicase 3, chloro...  162     3e-40 
sp|P9WH05|DEAD_MYCTU ATP-dependent RNA helicase DeaD OS=Mycobacte...  159     4e-40 
sp|P9WH04|DEAD_MYCTO ATP-dependent RNA helicase DeaD OS=Mycobacte...  159     4e-40 
sp|Q81DF9|CSHE_BACCR DEAD-box ATP-dependent RNA helicase CshE OS=...  155     1e-39 
sp|A6SCT6|DBP3_BOTFB ATP-dependent RNA helicase dbp3 OS=Botryotin...  157     2e-39 
sp|Q55D61|IF4A_DICDI Eukaryotic initiation factor 4A OS=Dictyoste...  153     3e-39 
sp|Q7S5R1|DBP3_NEUCR ATP-dependent RNA helicase dbp-3 OS=Neurospo...  157     4e-39 
sp|Q755N4|DBP2_EREGS ATP-dependent RNA helicase DBP2 OS=Eremothec...  155     5e-39 
sp|A7EYW0|DBP3_SCLS1 ATP-dependent RNA helicase dbp3 OS=Sclerotin...  155     8e-39 
sp|Q6CIV2|DBP2_KLULA ATP-dependent RNA helicase DBP2 OS=Kluyverom...  155     1e-38 
sp|Q814I2|DBPA_BACCR ATP-dependent RNA helicase DbpA OS=Bacillus ...  153     1e-38 
sp|Q2R1M8|RH52C_ORYSJ DEAD-box ATP-dependent RNA helicase 52C OS=...  154     2e-38 
sp|Q55804|CRHR_SYNY3 RNA helicase CrhR OS=Synechocystis sp. (stra...  152     3e-38 
sp|Q84W89|RH37_ARATH DEAD-box ATP-dependent RNA helicase 37 OS=Ar...  154     3e-38 
sp|A2QFL3|DBP3_ASPNC ATP-dependent RNA helicase dbp3 OS=Aspergill...  152     4e-38 
sp|P44586|DEAD_HAEIN ATP-dependent RNA helicase DeaD OS=Haemophil...  154     5e-38 
sp|Q9SZB4|RH43_ARATH Putative DEAD-box ATP-dependent RNA helicase...  152     6e-38 
sp|Q12099|FAL1_YEAST ATP-dependent RNA helicase FAL1 OS=Saccharom...  149     9e-38 
sp|A6ZXY5|FAL1_YEAS7 ATP-dependent RNA helicase FAL1 OS=Saccharom...  149     9e-38 
sp|Q0D8N0|RH53_ORYSJ DEAD-box ATP-dependent RNA helicase 53 OS=Or...  152     1e-37 
sp|A5DL80|DBP2_PICGU ATP-dependent RNA helicase DBP2 OS=Meyerozym...  152     1e-37 
sp|Q6BT27|FAL1_DEBHA ATP-dependent RNA helicase FAL1 OS=Debaryomy...  148     1e-37 
sp|Q0E3X4|RH35A_ORYSJ DEAD-box ATP-dependent RNA helicase 35A OS=...  152     2e-37 
sp|Q9LUW5|RH53_ARATH DEAD-box ATP-dependent RNA helicase 53, mito...  151     3e-37 
sp|P24783|DBP2_YEAST ATP-dependent RNA helicase DBP2 OS=Saccharom...  150     3e-37 
sp|A6ZRX0|DBP2_YEAS7 ATP-dependent RNA helicase DBP2 OS=Saccharom...  150     3e-37 
sp|Q8L7S8|RH3_ARATH DEAD-box ATP-dependent RNA helicase 3, chloro...  152     3e-37 
sp|Q9M2F9|RH52_ARATH DEAD-box ATP-dependent RNA helicase 52 OS=Ar...  151     4e-37 
sp|Q6BY27|DBP2_DEBHA ATP-dependent RNA helicase DBP2 OS=Debaryomy...  150     4e-37 
sp|Q5JKF2|RH40_ORYSJ DEAD-box ATP-dependent RNA helicase 40 OS=Or...  152     4e-37 
sp|Q59LU0|DBP2_CANAL ATP-dependent RNA helicase DBP2 OS=Candida a...  150     5e-37 
sp|A1C5V3|DBP3_ASPCL ATP-dependent RNA helicase dbp3 OS=Aspergill...  149     5e-37 
sp|A6RGE3|DBP2_AJECN ATP-dependent RNA helicase DBP2 OS=Ajellomyc...  149     6e-37 
sp|Q94A52|RH2_ARATH Eukaryotic initiation factor 4A-III homolog O...  146     7e-37 
sp|Q8LA13|RH11_ARATH DEAD-box ATP-dependent RNA helicase 11 OS=Ar...  150     8e-37 
sp|O02494|IF4A_CRYPV Eukaryotic initiation factor 4A OS=Cryptospo...  146     8e-37 
sp|Q9LU46|RH35_ARATH DEAD-box ATP-dependent RNA helicase 35 OS=Ar...  149     8e-37 
sp|A1DG51|DBP3_NEOFI ATP-dependent RNA helicase dbp3 OS=Neosartor...  148     8e-37 
sp|Q9VHP0|DDX3_DROME ATP-dependent RNA helicase bel OS=Drosophila...  151     9e-37 
sp|Q5Z6G5|RH35B_ORYSJ DEAD-box ATP-dependent RNA helicase 35B OS=...  150     9e-37 
sp|B4F1V3|RHLB_PROMH ATP-dependent RNA helicase RhlB OS=Proteus m...  146     1e-36 
sp|Q9LUW6|RH9_ARATH DEAD-box ATP-dependent RNA helicase 9, mitoch...  149     1e-36 
sp|Q4WH83|DBP3_ASPFU ATP-dependent RNA helicase dbp3 OS=Aspergill...  147     1e-36 
sp|Q6FLF3|DBP2_CANGA ATP-dependent RNA helicase DBP2 OS=Candida g...  148     2e-36 
sp|Q1DTB3|FAL1_COCIM ATP-dependent RNA helicase FAL1 OS=Coccidioi...  145     2e-36 
sp|P42305|DBPA_BACSU ATP-dependent RNA helicase DbpA OS=Bacillus ...  146     2e-36 
sp|Q75HJ0|RH37_ORYSJ DEAD-box ATP-dependent RNA helicase 37 OS=Or...  149     2e-36 
sp|Q6CX73|FAL1_KLULA ATP-dependent RNA helicase FAL1 OS=Kluyverom...  144     2e-36 
sp|P33906|DEAD_KLEPN ATP-dependent RNA helicase DeaD OS=Klebsiell...  149     3e-36 
sp|Q6Z4K6|RH52B_ORYSJ DEAD-box ATP-dependent RNA helicase 52B OS=...  149     3e-36 
sp|Q4P184|FAL1_USTMA ATP-dependent RNA helicase FAL1 OS=Ustilago ...  144     3e-36 
sp|Q5VQL1|RH14_ORYSJ DEAD-box ATP-dependent RNA helicase 14 OS=Or...  149     3e-36 
sp|Q2GWJ5|FAL1_CHAGB ATP-dependent RNA helicase FAL1 OS=Chaetomiu...  144     3e-36 
sp|Q0CL13|DBP3_ASPTN ATP-dependent RNA helicase dbp3 OS=Aspergill...  146     3e-36 
sp|Q8Y7M8|DBPA_LISMO ATP-dependent RNA helicase DbpA OS=Listeria ...  145     3e-36 
sp|Q9P735|FAL1_NEUCR ATP-dependent RNA helicase fal-1 OS=Neurospo...  144     3e-36 
sp|A5DWJ1|FAL1_LODEL ATP-dependent RNA helicase FAL1 OS=Lodderomy...  144     4e-36 
sp|Q9C551|RH5_ARATH DEAD-box ATP-dependent RNA helicase 5 OS=Arab...  146     5e-36 
sp|Q9LYJ9|RH46_ARATH DEAD-box ATP-dependent RNA helicase 46 OS=Ar...  148     5e-36 
sp|Q5A4E2|DED1_CANAL ATP-dependent RNA helicase DED1 OS=Candida a...  148     5e-36 
sp|Q4IF76|DBP2_GIBZE ATP-dependent RNA helicase DBP2 OS=Gibberell...  147     6e-36 
sp|A4QU31|FAL1_PYRO7 ATP-dependent RNA helicase FAL1 OS=Pyricular...  143     7e-36 
sp|A5DE68|FAL1_PICGU ATP-dependent RNA helicase FAL1 OS=Meyerozym...  143     7e-36 
sp|A6ZWD3|DBP1_YEAS7 ATP-dependent RNA helicase DBP1 OS=Saccharom...  147     7e-36 
sp|P24784|DBP1_YEAST ATP-dependent RNA helicase DBP1 OS=Saccharom...  147     8e-36 
sp|A5E1W4|DBP3_LODEL ATP-dependent RNA helicase DBP3 OS=Lodderomy...  145     9e-36 
sp|A6QXC1|DBP3_AJECN ATP-dependent RNA helicase DBP3 OS=Ajellomyc...  145     1e-35 
sp|Q4IAA0|FAL1_GIBZE ATP-dependent RNA helicase FAL1 OS=Gibberell...  143     1e-35 
sp|Q755A5|DBP3_EREGS ATP-dependent RNA helicase DBP3 OS=Eremothec...  145     1e-35 
sp|P57453|DEAD_BUCAI ATP-dependent RNA helicase DeaD OS=Buchnera ...  146     1e-35 
sp|A3GFV3|FAL1_PICST ATP-dependent RNA helicase FAL1 OS=Scheffers...  142     1e-35 
sp|A5DQS0|DED1_PICGU ATP-dependent RNA helicase DED1 OS=Meyerozym...  147     1e-35 
sp|Q7SBC6|DBP2_NEUCR ATP-dependent RNA helicase dbp2 OS=Neurospor...  145     1e-35 
sp|Q8XA87|DEAD_ECO57 ATP-dependent RNA helicase DeaD OS=Escherich...  146     1e-35 
sp|Q9SQV1|RH40_ARATH DEAD-box ATP-dependent RNA helicase 40 OS=Ar...  148     1e-35 
sp|G0SFM2|DBP2_CHATD ATP-dependent RNA helicase DBP2 OS=Chaetomiu...  145     1e-35 
sp|Q8K9H6|DEAD_BUCAP ATP-dependent RNA helicase DeaD OS=Buchnera ...  146     1e-35 
sp|Q8Y8N0|CSHA_LISMO ATP-dependent RNA helicase CshA OS=Listeria ...  145     2e-35 
sp|P41380|IF4A3_NICPL Eukaryotic initiation factor 4A-3 OS=Nicoti...  142     2e-35 
sp|Q4IJH1|DBP3_GIBZE ATP-dependent RNA helicase DBP3 OS=Gibberell...  145     2e-35 
sp|P0A9P8|DEAD_SHIFL ATP-dependent RNA helicase DeaD OS=Shigella ...  146     2e-35 
sp|P0A9P6|DEAD_ECOLI ATP-dependent RNA helicase DeaD OS=Escherich...  146     2e-35 
sp|P0A9P7|DEAD_ECOL6 ATP-dependent RNA helicase DeaD OS=Escherich...  146     2e-35 
sp|Q84UQ1|RH42_ORYSJ DEAD-box ATP-dependent RNA helicase 42 OS=Or...  148     2e-35 
sp|A6ZP47|DED1_YEAS7 ATP-dependent RNA helicase DED1 OS=Saccharom...  145     2e-35 
sp|A7E449|DBP2_SCLS1 ATP-dependent RNA helicase dbp2 OS=Sclerotin...  145     2e-35 
sp|P06634|DED1_YEAST ATP-dependent RNA helicase DED1 OS=Saccharom...  145     2e-35 
sp|Q7SH33|PRP5_NEUCR Pre-mRNA-processing ATP-dependent RNA helica...  148     2e-35 
sp|Q2HBE7|DED1_CHAGB ATP-dependent RNA helicase DED1 OS=Chaetomiu...  146     2e-35 
sp|Q87KH5|RHLB_VIBPA ATP-dependent RNA helicase RhlB OS=Vibrio pa...  142     2e-35 
sp|Q1DP69|DBP2_COCIM ATP-dependent RNA helicase DBP2 OS=Coccidioi...  144     2e-35 
sp|A4QSS5|DBP2_PYRO7 ATP-dependent RNA helicase DBP2 OS=Pyricular...  144     3e-35 
sp|Q0DB53|RH52A_ORYSJ DEAD-box ATP-dependent RNA helicase 52A OS=...  145     3e-35 
sp|Q75B50|DED1_EREGS ATP-dependent RNA helicase DED1 OS=Eremothec...  145     3e-35 
sp|Q8Y755|CSHB_LISMO DEAD-box ATP-dependent RNA helicase CshB OS=...  142     3e-35 
sp|A1DGZ7|DBP2_NEOFI ATP-dependent RNA helicase dbp2 OS=Neosartor...  144     4e-35 
sp|A6SFW7|DBP2_BOTFB ATP-dependent RNA helicase dbp2 OS=Botryotin...  144     4e-35 
sp|Q6C4D4|DBP2_YARLI ATP-dependent RNA helicase DBP2 OS=Yarrowia ...  144     6e-35 
sp|Q2UMH8|DBP3_ASPOR ATP-dependent RNA helicase dbp3 OS=Aspergill...  142     6e-35 
sp|Q8TFK8|DED1_CANGA ATP-dependent RNA helicase DED1 OS=Candida g...  144     6e-35 
sp|Q5B0J9|DBP2_EMENI ATP-dependent RNA helicase dbp2 OS=Emericell...  144     6e-35 
sp|Q6BU54|DED1_DEBHA ATP-dependent RNA helicase DED1 OS=Debaryomy...  144     7e-35 
sp|Q4X195|DBP2_ASPFU ATP-dependent RNA helicase dbp2 OS=Aspergill...  143     7e-35 
sp|Q5AWA6|DBP3_EMENI ATP-dependent RNA helicase dbp3 OS=Emericell...  142     7e-35 
sp|Q6C9P3|DBP3_YARLI ATP-dependent RNA helicase DBP3 OS=Yarrowia ...  143     8e-35 
sp|Q4I7K4|DED1_GIBZE ATP-dependent RNA helicase DED1 OS=Gibberell...  144     9e-35 
sp|Q8H136|RH14_ARATH DEAD-box ATP-dependent RNA helicase 14 OS=Ar...  144     1e-34 
sp|Q0UWA6|DED1_PHANO ATP-dependent RNA helicase DED1 OS=Phaeospha...  144     1e-34 
sp|Q2HAD8|PRP5_CHAGB Pre-mRNA-processing ATP-dependent RNA helica...  145     1e-34 
sp|Q10055|FAL1_SCHPO ATP-dependent RNA helicase fal1 OS=Schizosac...  140     1e-34 
sp|B2VG58|RHLB_ERWT9 ATP-dependent RNA helicase RhlB OS=Erwinia t...  140     1e-34 
sp|Q10202|DBP3_SCHPO ATP-dependent RNA helicase dbp3 OS=Schizosac...  143     1e-34 
sp|Q6CZD9|RHLB_PECAS ATP-dependent RNA helicase RhlB OS=Pectobact...  140     1e-34 
sp|Q9C8J1|RH34_ARATH DEAD-box ATP-dependent RNA helicase 34 OS=Ar...  139     1e-34 
sp|A6QSQ0|FAL1_AJECN ATP-dependent RNA helicase FAL1 OS=Ajellomyc...  140     1e-34 
sp|A3LQ01|DED1_PICST ATP-dependent RNA helicase DED1 OS=Scheffers...  143     1e-34 
sp|A2QC74|DBP2_ASPNC ATP-dependent RNA helicase dbp2 OS=Aspergill...  142     1e-34 
sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42 OS=Ar...  145     2e-34 
sp|Q9P6U9|DED1_NEUCR ATP-dependent RNA helicase ded1 OS=Neurospor...  144     2e-34 
sp|Q0UY62|DBP3_PHANO ATP-dependent RNA helicase DBP3 OS=Phaeospha...  142     2e-34 
sp|Q4WEB4|FAL1_ASPFU ATP-dependent RNA helicase fal1 OS=Aspergill...  139     2e-34 
sp|Q2UAK1|FAL1_ASPOR ATP-dependent RNA helicase fal1 OS=Aspergill...  139     2e-34 
sp|Q09719|DBP10_SCHPO ATP-dependent RNA helicase dbp10 OS=Schizos...  144     2e-34 
sp|Q6C347|FAL1_YARLI ATP-dependent RNA helicase FAL1 OS=Yarrowia ...  139     2e-34 
sp|A7EM88|FAL1_SCLS1 ATP-dependent RNA helicase fal1 OS=Sclerotin...  139     2e-34 
sp|Q6BZ77|DBP3_DEBHA ATP-dependent RNA helicase DBP3 OS=Debaryomy...  141     2e-34 
sp|Q9HXE5|RHLB_PSEAE ATP-dependent RNA helicase RhlB OS=Pseudomon...  139     2e-34 
sp|Q02S21|RHLB_PSEAB ATP-dependent RNA helicase RhlB OS=Pseudomon...  139     2e-34 
sp|B7UUT0|RHLB_PSEA8 ATP-dependent RNA helicase RhlB OS=Pseudomon...  139     2e-34 
sp|A7MQI2|RHLB_CROS8 ATP-dependent RNA helicase RhlB OS=Cronobact...  139     2e-34 
sp|A6TGG9|RHLB_KLEP7 ATP-dependent RNA helicase RhlB OS=Klebsiell...  139     3e-34 
sp|A6VKC3|RHLB_ACTSZ ATP-dependent RNA helicase RhlB OS=Actinobac...  139     3e-34 
sp|A1D071|FAL1_NEOFI ATP-dependent RNA helicase fal1 OS=Neosartor...  139     3e-34 
sp|Q5AUL4|FAL1_EMENI ATP-dependent RNA helicase fal1 OS=Emericell...  139     3e-34 
sp|C6DHF5|RHLB_PECCP ATP-dependent RNA helicase RhlB OS=Pectobact...  139     3e-34 
sp|Q2U070|DBP2_ASPOR ATP-dependent RNA helicase dbp2 OS=Aspergill...  141     3e-34 
sp|A1C6C4|DBP2_ASPCL ATP-dependent RNA helicase dbp2 OS=Aspergill...  141     3e-34 
sp|Q10I26|IF43B_ORYSJ Eukaryotic initiation factor 4A-III homolog...  139     3e-34 
sp|A6S4N4|FAL1_BOTFB ATP-dependent RNA helicase fal1 OS=Botryotin...  138     3e-34 
sp|Q0CAS8|FAL1_ASPTN ATP-dependent RNA helicase fal1 OS=Aspergill...  138     3e-34 
sp|A1C595|FAL1_ASPCL ATP-dependent RNA helicase fal1 OS=Aspergill...  138     3e-34 
sp|A5AAE5|FAL1_ASPNC ATP-dependent RNA helicase fal1 OS=Aspergill...  138     3e-34 
sp|P96614|CSHA_BACSU DEAD-box ATP-dependent RNA helicase CshA OS=...  140     4e-34 
sp|A7TKR8|DED1_VANPO ATP-dependent RNA helicase DED1 OS=Vanderwal...  142     4e-34 
sp|A4RHF1|DED1_PYRO7 ATP-dependent RNA helicase DED1 OS=Pyricular...  142     4e-34 
sp|Q1DJF0|DED1_COCIM ATP-dependent RNA helicase DED1 OS=Coccidioi...  142     4e-34 
sp|Q5L3G9|CSHA_GEOKA DEAD-box ATP-dependent RNA helicase CshA OS=...  139     4e-34 
sp|Q62167|DDX3X_MOUSE ATP-dependent RNA helicase DDX3X OS=Mus mus...  142     5e-34 
sp|Q88NB7|RHLB_PSEPK ATP-dependent RNA helicase RhlB OS=Pseudomon...  138     5e-34 
sp|Q9CAI7|IF4A3_ARATH Eukaryotic initiation factor 4A-3 OS=Arabid...  138     6e-34 
sp|B7VME9|RHLB_VIBA3 ATP-dependent RNA helicase RhlB OS=Vibrio at...  139     6e-34 
sp|B5XYY9|RHLB_KLEP3 ATP-dependent RNA helicase RhlB OS=Klebsiell...  138     6e-34 
sp|B1KQF6|RHLB_SHEWM ATP-dependent RNA helicase RhlB OS=Shewanell...  139     6e-34 
sp|A5DZE6|DED1_LODEL ATP-dependent RNA helicase DED1 OS=Lodderomy...  142     7e-34 
sp|A7EJY3|DED1_SCLS1 ATP-dependent RNA helicase ded1 OS=Sclerotin...  142     7e-34 
sp|A6R3L3|DED1_AJECN ATP-dependent RNA helicase DED1 OS=Ajellomyc...  142     7e-34 
sp|A7MXT4|RHLB_VIBC1 ATP-dependent RNA helicase RhlB OS=Vibrio ca...  138     7e-34 
sp|A4WG30|RHLB_ENT38 ATP-dependent RNA helicase RhlB OS=Enterobac...  138     7e-34 
sp|C4K8M8|RHLB_HAMD5 ATP-dependent RNA helicase RhlB OS=Hamiltone...  138     7e-34 
sp|Q9NXZ2|DDX43_HUMAN Probable ATP-dependent RNA helicase DDX43 O...  141     8e-34 
sp|Q6CLR3|DED1_KLULA ATP-dependent RNA helicase DED1 OS=Kluyverom...  141     8e-34 
sp|B5BIS9|RHLB_SALPK ATP-dependent RNA helicase RhlB OS=Salmonell...  137     9e-34 
sp|Q91372|DDX4_XENLA Probable ATP-dependent RNA helicase DDX4 OS=...  141     9e-34 
sp|Q40467|IF414_TOBAC Eukaryotic initiation factor 4A-14 OS=Nicot...  137     1e-33 
sp|C8V8H4|DED1_EMENI ATP-dependent RNA helicase ded1 OS=Emericell...  141     1e-33 
sp|Q5VNM3|IF43A_ORYSJ Eukaryotic initiation factor 4A-III homolog...  137     1e-33 
sp|A9MJ29|RHLB_SALAR ATP-dependent RNA helicase RhlB OS=Salmonell...  137     1e-33 
sp|P0A2P0|RHLB_SALTY ATP-dependent RNA helicase RhlB OS=Salmonell...  137     1e-33 
sp|P0A2P1|RHLB_SALTI ATP-dependent RNA helicase RhlB OS=Salmonell...  137     1e-33 
sp|B4TNT3|RHLB_SALSV ATP-dependent RNA helicase RhlB OS=Salmonell...  137     1e-33 
sp|C0Q2V9|RHLB_SALPC ATP-dependent RNA helicase RhlB OS=Salmonell...  137     1e-33 
sp|A9MXF3|RHLB_SALPB ATP-dependent RNA helicase RhlB OS=Salmonell...  137     1e-33 
sp|B4SZ26|RHLB_SALNS ATP-dependent RNA helicase RhlB OS=Salmonell...  137     1e-33 
sp|B4TB13|RHLB_SALHS ATP-dependent RNA helicase RhlB OS=Salmonell...  137     1e-33 
sp|B5RFS3|RHLB_SALG2 ATP-dependent RNA helicase RhlB OS=Salmonell...  137     1e-33 
sp|B5QVH2|RHLB_SALEP ATP-dependent RNA helicase RhlB OS=Salmonell...  137     1e-33 
sp|Q57HT6|RHLB_SALCH ATP-dependent RNA helicase RhlB OS=Salmonell...  137     1e-33 
sp|B5EZ40|RHLB_SALA4 ATP-dependent RNA helicase RhlB OS=Salmonell...  137     1e-33 
sp|A6SEH9|DED1_BOTFB ATP-dependent RNA helicase ded1 OS=Botryotin...  141     1e-33 
sp|Q088J2|RHLB_SHEFN ATP-dependent RNA helicase RhlB OS=Shewanell...  137     1e-33 
sp|Q6FS54|DBP3_CANGA ATP-dependent RNA helicase DBP3 OS=Candida g...  139     1e-33 
sp|Q62095|DDX3Y_MOUSE ATP-dependent RNA helicase DDX3Y OS=Mus mus...  140     1e-33 
sp|B1JQ11|RHLB_YERPY ATP-dependent RNA helicase RhlB OS=Yersinia ...  137     1e-33 
sp|Q66G19|RHLB_YERPS ATP-dependent RNA helicase RhlB OS=Yersinia ...  137     1e-33 
sp|A4TRC8|RHLB_YERPP ATP-dependent RNA helicase RhlB OS=Yersinia ...  137     1e-33 
sp|Q1CNK3|RHLB_YERPN ATP-dependent RNA helicase RhlB OS=Yersinia ...  137     1e-33 
sp|Q8ZAD8|RHLB_YERPE ATP-dependent RNA helicase RhlB OS=Yersinia ...  137     1e-33 
sp|B2K046|RHLB_YERPB ATP-dependent RNA helicase RhlB OS=Yersinia ...  137     1e-33 
sp|Q1CBQ4|RHLB_YERPA ATP-dependent RNA helicase RhlB OS=Yersinia ...  137     1e-33 
sp|A7FD47|RHLB_YERP3 ATP-dependent RNA helicase RhlB OS=Yersinia ...  137     1e-33 
sp|P0A4D8|CSHA_STRR6 DEAD-box ATP-dependent RNA helicase CshA OS=...  139     1e-33 
sp|P0A4D7|CSHA_STRPN DEAD-box ATP-dependent RNA helicase CshA OS=...  139     1e-33 
sp|B5FN74|RHLB_SALDC ATP-dependent RNA helicase RhlB OS=Salmonell...  137     1e-33 
sp|P21693|DBPA_ECOLI ATP-dependent RNA helicase DbpA OS=Escherich...  138     2e-33 
sp|P41378|IF4A_WHEAT Eukaryotic initiation factor 4A OS=Triticum ...  137     2e-33 
sp|A8ACT3|RHLB_CITK8 ATP-dependent RNA helicase RhlB OS=Citrobact...  137     2e-33 
sp|Q2H720|DBP2_CHAGB ATP-dependent RNA helicase DBP2 OS=Chaetomiu...  139     2e-33 
sp|P24346|DDX3_XENLA Putative ATP-dependent RNA helicase an3 OS=X...  140     2e-33 
sp|Q8DDN6|RHLB_VIBVU ATP-dependent RNA helicase RhlB OS=Vibrio vu...  137     2e-33 
sp|Q7MGP7|RHLB_VIBVY ATP-dependent RNA helicase RhlB OS=Vibrio vu...  137     2e-33 
sp|Q9ZRZ8|RH28_ARATH DEAD-box ATP-dependent RNA helicase 28 OS=Ar...  140     3e-33 
sp|P16381|DDX3L_MOUSE Putative ATP-dependent RNA helicase Pl10 OS...  140     3e-33 
sp|Q887N8|RHLB_PSESM ATP-dependent RNA helicase RhlB OS=Pseudomon...  135     3e-33 
sp|O25029|RHPA_HELPY DEAD-box ATP-dependent RNA helicase RhpA OS=...  137     3e-33 
sp|B7NTG2|RHLB_ECO7I ATP-dependent RNA helicase RhlB OS=Escherich...  136     3e-33 
sp|A7TEF4|FAL1_VANPO ATP-dependent RNA helicase FAL1 OS=Vanderwal...  135     3e-33 
sp|Q65N62|CSHA_BACLD DEAD-box ATP-dependent RNA helicase CshA OS=...  137     3e-33 
sp|Q329V8|RHLB_SHIDS ATP-dependent RNA helicase RhlB OS=Shigella ...  136     3e-33 
sp|B7LU75|RHLB_ESCF3 ATP-dependent RNA helicase RhlB OS=Escherich...  136     3e-33 
sp|Q12S35|RHLB_SHEDO ATP-dependent RNA helicase RhlB OS=Shewanell...  136     3e-33 
sp|Q8CRP6|CSHA_STAES DEAD-box ATP-dependent RNA helicase CshA OS=...  137     3e-33 
sp|P20447|DBP3_YEAST ATP-dependent RNA helicase DBP3 OS=Saccharom...  138     4e-33 
sp|P41382|IF410_TOBAC Eukaryotic initiation factor 4A-10 OS=Nicot...  135     4e-33 
sp|B1LLV3|RHLB_ECOSM ATP-dependent RNA helicase RhlB OS=Escherich...  136     4e-33 
sp|B7NF85|RHLB_ECOLU ATP-dependent RNA helicase RhlB OS=Escherich...  136     4e-33 
sp|Q1DZK8|DBP3_COCIM ATP-dependent RNA helicase DBP3 OS=Coccidioi...  137     4e-33 
sp|Q0SYX0|RHLB_SHIF8 ATP-dependent RNA helicase RhlB OS=Shigella ...  136     4e-33 
sp|B5YY28|RHLB_ECO5E ATP-dependent RNA helicase RhlB OS=Escherich...  136     4e-33 
sp|Q7MYL2|RHLB_PHOLL ATP-dependent RNA helicase RhlB OS=Photorhab...  136     4e-33 
sp|P35683|IF4A1_ORYSJ Eukaryotic initiation factor 4A-1 OS=Oryza ...  135     4e-33 
sp|Q41741|IF4A_MAIZE Eukaryotic initiation factor 4A OS=Zea mays ...  135     4e-33 
sp|P41381|IF4A8_TOBAC Eukaryotic initiation factor 4A-8 OS=Nicoti...  135     4e-33 
sp|Q3YVI4|RHLB_SHISS ATP-dependent RNA helicase RhlB OS=Shigella ...  135     4e-33 
sp|P0A8K0|RHLB_SHIFL ATP-dependent RNA helicase RhlB OS=Shigella ...  135     4e-33 
sp|Q31UK5|RHLB_SHIBS ATP-dependent RNA helicase RhlB OS=Shigella ...  135     4e-33 
sp|B2TU12|RHLB_SHIB3 ATP-dependent RNA helicase RhlB OS=Shigella ...  135     4e-33 
sp|Q1R4F9|RHLB_ECOUT ATP-dependent RNA helicase RhlB OS=Escherich...  135     4e-33 
sp|B6I4B6|RHLB_ECOSE ATP-dependent RNA helicase RhlB OS=Escherich...  135     4e-33 
sp|P0A8J8|RHLB_ECOLI ATP-dependent RNA helicase RhlB OS=Escherich...  135     4e-33 
sp|B1IWC0|RHLB_ECOLC ATP-dependent RNA helicase RhlB OS=Escherich...  135     4e-33 
sp|P0A8J9|RHLB_ECOL6 ATP-dependent RNA helicase RhlB OS=Escherich...  135     4e-33 
sp|Q0TAU3|RHLB_ECOL5 ATP-dependent RNA helicase RhlB OS=Escherich...  135     4e-33 
sp|A1AHV0|RHLB_ECOK1 ATP-dependent RNA helicase RhlB OS=Escherich...  135     4e-33 
sp|A8A6N4|RHLB_ECOHS ATP-dependent RNA helicase RhlB OS=Escherich...  135     4e-33 
sp|B1X9Z4|RHLB_ECODH ATP-dependent RNA helicase RhlB OS=Escherich...  135     4e-33 
sp|C4ZZ48|RHLB_ECOBW ATP-dependent RNA helicase RhlB OS=Escherich...  135     4e-33 
sp|B7M5C7|RHLB_ECO8A ATP-dependent RNA helicase RhlB OS=Escherich...  135     4e-33 
sp|B7MR01|RHLB_ECO81 ATP-dependent RNA helicase RhlB OS=Escherich...  135     4e-33 
sp|B7L8B6|RHLB_ECO55 ATP-dependent RNA helicase RhlB OS=Escherich...  135     4e-33 
sp|B7MGJ1|RHLB_ECO45 ATP-dependent RNA helicase RhlB OS=Escherich...  135     4e-33 
sp|B7UMN5|RHLB_ECO27 ATP-dependent RNA helicase RhlB OS=Escherich...  135     4e-33 
sp|A7ZTY2|RHLB_ECO24 ATP-dependent RNA helicase RhlB OS=Escherich...  135     4e-33 
sp|Q5RF43|DDX3Y_PONAB ATP-dependent RNA helicase DDX3Y OS=Pongo a...  139     4e-33 
sp|A6ZUA1|DBP3_YEAS7 ATP-dependent RNA helicase DBP3 OS=Saccharom...  137     4e-33 
sp|O00571|DDX3X_HUMAN ATP-dependent RNA helicase DDX3X OS=Homo sa...  139     4e-33 
sp|Q8XAT4|RHLB_ECO57 ATP-dependent RNA helicase RhlB OS=Escherich...  135     5e-33 
sp|P0CQ79|DBP3_CRYNB ATP-dependent RNA helicase DBP3 OS=Cryptococ...  138     5e-33 
sp|O15523|DDX3Y_HUMAN ATP-dependent RNA helicase DDX3Y OS=Homo sa...  139     5e-33 
sp|P0CQ78|DBP3_CRYNJ ATP-dependent RNA helicase DBP3 OS=Cryptococ...  138     5e-33 
sp|B9XXL6|RHPA_HELP8 DEAD-box ATP-dependent RNA helicase RhpA OS=...  137     5e-33 
sp|Q0CXD0|IF4A_ASPTN ATP-dependent RNA helicase eIF4A OS=Aspergil...  135     5e-33 
sp|Q6GVM6|DDX3Y_PANTR ATP-dependent RNA helicase DDX3Y OS=Pan tro...  139     5e-33 
sp|Q54QS3|DDX3_DICDI Probable ATP-dependent RNA helicase ddx3 OS=...  139     6e-33 
sp|A3Q9R3|RHLB_SHELP ATP-dependent RNA helicase RhlB OS=Shewanell...  135     6e-33 
sp|Q5B948|IF4A_EMENI ATP-dependent RNA helicase eIF4A OS=Emericel...  135     6e-33 
sp|P46942|DB10_NICSY ATP-dependent RNA helicase-like protein DB10...  138     6e-33 
sp|P0CQ72|FAL1_CRYNJ ATP-dependent RNA helicase FAL1 OS=Cryptococ...  134     6e-33 
sp|P0CQ73|FAL1_CRYNB ATP-dependent RNA helicase FAL1 OS=Cryptococ...  134     6e-33 
sp|Q54CE0|DDX17_DICDI Probable ATP-dependent RNA helicase ddx17 O...  139     7e-33 
sp|A1SAL1|RHLB_SHEAM ATP-dependent RNA helicase RhlB OS=Shewanell...  135     7e-33 
sp|B6EPA4|RHLB_ALISL ATP-dependent RNA helicase RhlB OS=Aliivibri...  135     7e-33 
sp|Q49Z29|CSHA_STAS1 DEAD-box ATP-dependent RNA helicase CshA OS=...  137     7e-33 
sp|P41376|IF4A1_ARATH Eukaryotic initiation factor 4A-1 OS=Arabid...  135     8e-33 
sp|P41379|IF4A2_NICPL Eukaryotic initiation factor 4A-2 OS=Nicoti...  135     8e-33 
sp|A1CH78|DED1_ASPCL ATP-dependent RNA helicase ded1 OS=Aspergill...  138     8e-33 
sp|Q40470|IF4A7_TOBAC Eukaryotic initiation factor 4A-7 OS=Nicoti...  134     9e-33 
sp|A1CXK7|DED1_NEOFI ATP-dependent RNA helicase ded1 OS=Neosartor...  138     9e-33 
sp|Q501J6|DDX17_MOUSE Probable ATP-dependent RNA helicase DDX17 O...  138     9e-33 
sp|Q40465|IF411_TOBAC Eukaryotic initiation factor 4A-11 OS=Nicot...  134     9e-33 
sp|Q54TJ4|DDX27_DICDI Probable ATP-dependent RNA helicase ddx27 O...  139     9e-33 
sp|A7TJ36|DBP3_VANPO ATP-dependent RNA helicase DBP3 OS=Vanderwal...  136     1e-32 
sp|Q9Z6C9|CSHA_LIMRT ATP-dependent RNA helicase CshA OS=Limosilac...  136     1e-32 
sp|Q5HME0|CSHA_STAEQ DEAD-box ATP-dependent RNA helicase CshA OS=...  136     1e-32 
sp|A2QI25|DED1_ASPNC ATP-dependent RNA helicase ded1 OS=Aspergill...  138     1e-32 
sp|Q2NQB2|RHLB_SODGM ATP-dependent RNA helicase RhlB OS=Sodalis g...  134     1e-32 
sp|Q2UGK3|DED1_ASPOR ATP-dependent RNA helicase ded1 OS=Aspergill...  138     1e-32 
sp|O13370|DED1_SCHPO ATP-dependent RNA helicase ded1 OS=Schizosac...  137     1e-32 
sp|A3LRW2|DBP3_PICST ATP-dependent RNA helicase DBP3 OS=Scheffers...  136     1e-32 
sp|Q5APT8|DBP3_CANAL ATP-dependent RNA helicase DBP3 OS=Candida a...  137     1e-32 
sp|Q95YF3|CGH1_CAEEL ATP-dependent RNA helicase cgh-1 OS=Caenorha...  134     1e-32 
sp|Q40468|IF415_TOBAC Eukaryotic initiation factor 4A-15 OS=Nicot...  134     1e-32 
sp|A8G828|RHLB_SERP5 ATP-dependent RNA helicase RhlB OS=Serratia ...  134     1e-32 
sp|Q54KG1|DDX41_DICDI Probable ATP-dependent RNA helicase ddx41 O...  137     1e-32 
sp|Q4WP13|DED1_ASPFU ATP-dependent RNA helicase ded1 OS=Aspergill...  137     1e-32 
sp|Q92841|DDX17_HUMAN Probable ATP-dependent RNA helicase DDX17 O...  138     2e-32 
sp|Q8EJQ5|RHLB_SHEON ATP-dependent RNA helicase RhlB OS=Shewanell...  134     2e-32 
sp|A5UI36|RHLB_HAEIG ATP-dependent RNA helicase RhlB OS=Haemophil...  134     2e-32 
sp|Q6LLL5|RHLB_PHOPR ATP-dependent RNA helicase RhlB OS=Photobact...  134     2e-32 
sp|A8GZJ0|RHLB_SHEPA ATP-dependent RNA helicase RhlB OS=Shewanell...  134     2e-32 
sp|A1RFB3|RHLB_SHESW ATP-dependent RNA helicase RhlB OS=Shewanell...  134     2e-32 
sp|A4YB09|RHLB_SHEPC ATP-dependent RNA helicase RhlB OS=Shewanell...  134     2e-32 
sp|A8G0U0|RHLB_SHESH ATP-dependent RNA helicase RhlB OS=Shewanell...  134     2e-32 
sp|P24782|DBP2_SCHPO ATP-dependent RNA helicase dbp2 OS=Schizosac...  135     3e-32 
sp|Q4PHU9|DBP2_USTMA ATP-dependent RNA helicase DBP2 OS=Ustilago ...  135     3e-32 
sp|P0CQ76|DBP2_CRYNJ ATP-dependent RNA helicase DBP2-A OS=Cryptoc...  135     3e-32 
sp|P0CQ77|DBP2_CRYNB ATP-dependent RNA helicase DBP2-A OS=Cryptoc...  135     3e-32 
sp|Q02748|IF4A_DROME Eukaryotic initiation factor 4A OS=Drosophil...  132     3e-32 
sp|Q4IP34|PRP5_GIBZE Pre-mRNA-processing ATP-dependent RNA helica...  138     3e-32 
sp|Q9BQ39|DDX50_HUMAN ATP-dependent RNA helicase DDX50 OS=Homo sa...  137     4e-32 
sp|C3LQR1|RHLB_VIBCM ATP-dependent RNA helicase RhlB OS=Vibrio ch...  133     4e-32 
sp|Q9KV52|RHLB_VIBCH ATP-dependent RNA helicase RhlB OS=Vibrio ch...  133     4e-32 
sp|A5F3R4|RHLB_VIBC3 ATP-dependent RNA helicase RhlB OS=Vibrio ch...  133     4e-32 
sp|Q4L7W0|CSHA_STAHJ DEAD-box ATP-dependent RNA helicase CshA OS=...  134     4e-32 
sp|P0CQ70|IF4A_CRYNJ ATP-dependent RNA helicase eIF4A OS=Cryptoco...  132     5e-32 
sp|P0CQ71|IF4A_CRYNB ATP-dependent RNA helicase eIF4A OS=Cryptoco...  132     5e-32 
sp|Q58083|H669_METJA Probable ATP-dependent RNA helicase MJ0669 O...  131     5e-32 
sp|Q6YS30|RH5_ORYSJ DEAD-box ATP-dependent RNA helicase 5 OS=Oryz...  134     5e-32 
sp|Q6Z2Z4|IF4A3_ORYSJ Eukaryotic initiation factor 4A-3 OS=Oryza ...  132     5e-32 
sp|P17844|DDX5_HUMAN Probable ATP-dependent RNA helicase DDX5 OS=...  135     5e-32 
sp|Q7A0D2|CSHA_STAAW DEAD-box ATP-dependent RNA helicase CshA OS=...  134     5e-32 
sp|Q6G7M9|CSHA_STAAS DEAD-box ATP-dependent RNA helicase CshA OS=...  134     5e-32 
sp|Q7A4G0|CSHA_STAAN DEAD-box ATP-dependent RNA helicase CshA OS=...  134     5e-32 
sp|Q99SH6|CSHA_STAAM DEAD-box ATP-dependent RNA helicase CshA OS=...  134     5e-32 
sp|Q5HEB9|CSHA_STAAC DEAD-box ATP-dependent RNA helicase CshA OS=...  134     5e-32 
sp|Q2FWH5|CSHA_STAA8 DEAD-box ATP-dependent RNA helicase CshA OS=...  134     5e-32 
sp|Q2FF45|CSHA_STAA3 DEAD-box ATP-dependent RNA helicase CshA OS=...  134     5e-32 
sp|Q6GEZ3|CSHA_STAAR DEAD-box ATP-dependent RNA helicase CshA OS=...  134     5e-32 
sp|Q40471|IF4A9_TOBAC Eukaryotic initiation factor 4A-9 OS=Nicoti...  132     5e-32 
sp|Q25225|IF4A_LEIBR Probable eukaryotic initiation factor 4A OS=...  132     5e-32 
sp|Q61656|DDX5_MOUSE Probable ATP-dependent RNA helicase DDX5 OS=...  135     6e-32 
sp|Q5R4I9|DDX5_PONAB Probable ATP-dependent RNA helicase DDX5 OS=...  135     6e-32 
sp|Q6CT46|DBP3_KLULA ATP-dependent RNA helicase DBP3 OS=Kluyverom...  134     7e-32 
sp|Q2YUH3|CSHA_STAAB DEAD-box ATP-dependent RNA helicase CshA OS=...  134     7e-32 
sp|Q4R6M5|DDX5_MACFA Probable ATP-dependent RNA helicase DDX5 OS=...  135     7e-32 
sp|Q99MJ9|DDX50_MOUSE ATP-dependent RNA helicase DDX50 OS=Mus mus...  136     7e-32 
sp|B0TJ29|RHLB_SHEHH ATP-dependent RNA helicase RhlB OS=Shewanell...  132     8e-32 
sp|Q81IT9|CSHA_BACCR DEAD-box ATP-dependent RNA helicase CshA OS=...  134     9e-32 
sp|Q0CLJ6|DED1_ASPTN ATP-dependent RNA helicase ded1 OS=Aspergill...  135     9e-32 
sp|Q73EU1|CSHA_BACC1 DEAD-box ATP-dependent RNA helicase CshA OS=...  134     9e-32 
sp|Q6FP38|DBP1_CANGA ATP-dependent RNA helicase DBP1 OS=Candida g...  134     1e-31 
sp|Q2GUI4|DBP3_CHAGB ATP-dependent RNA helicase DBP3 OS=Chaetomiu...  134     1e-31 
sp|Q91VN6|DDX41_MOUSE Probable ATP-dependent RNA helicase DDX41 O...  135     1e-31 
sp|Q9V3C0|DDX41_DROME ATP-dependent RNA helicase abstrakt OS=Dros...  134     1e-31 
sp|Q755W0|FAL1_EREGS ATP-dependent RNA helicase FAL1 OS=Eremothec...  131     1e-31 
sp|Q63GX5|CSHA_BACCZ DEAD-box ATP-dependent RNA helicase CshA OS=...  133     1e-31 
sp|Q9UJV9|DDX41_HUMAN Probable ATP-dependent RNA helicase DDX41 O...  134     1e-31 
sp|B8CHZ1|RHLB_SHEPW ATP-dependent RNA helicase RhlB OS=Shewanell...  132     1e-31 
sp|Q6FJG1|FAL1_CANGA ATP-dependent RNA helicase FAL1 OS=Candida g...  131     1e-31 
sp|Q6HPE6|CSHA_BACHK DEAD-box ATP-dependent RNA helicase CshA OS=...  133     1e-31 
sp|Q81VG0|CSHA_BACAN DEAD-box ATP-dependent RNA helicase CshA OS=...  133     1e-31 
sp|A0R8U6|CSHA_BACAH DEAD-box ATP-dependent RNA helicase CshA OS=...  133     1e-31 
sp|A3D9I5|RHLB_SHEB5 ATP-dependent RNA helicase RhlB OS=Shewanell...  132     1e-31 
sp|B8E670|RHLB_SHEB2 ATP-dependent RNA helicase RhlB OS=Shewanell...  132     1e-31 
sp|A9L5D5|RHLB_SHEB9 ATP-dependent RNA helicase RhlB OS=Shewanell...  132     1e-31 
sp|A6WTD3|RHLB_SHEB8 ATP-dependent RNA helicase RhlB OS=Shewanell...  132     1e-31 
sp|A1CJT5|IF4A_ASPCL ATP-dependent RNA helicase eIF4A OS=Aspergil...  130     2e-31 
sp|O62591|IF4A_LEIMA Probable eukaryotic initiation factor 4A OS=...  130     2e-31 
sp|A4HRK0|IF4A_LEIIN Probable eukaryotic initiation factor 4A OS=...  130     2e-31 
sp|Q0INC5|RH28_ORYSJ DEAD-box ATP-dependent RNA helicase 28 OS=Or...  135     2e-31 
sp|A0KS84|RHLB_SHESA ATP-dependent RNA helicase RhlB OS=Shewanell...  131     2e-31 
sp|P19109|DDX17_DROME ATP-dependent RNA helicase p62 OS=Drosophil...  134     2e-31 
sp|A1CX72|PRP28_NEOFI Pre-mRNA-splicing ATP-dependent RNA helicas...  135     2e-31 
sp|P09052|VASA1_DROME ATP-dependent RNA helicase vasa OS=Drosophi...  134     2e-31 
sp|B5FF87|RHLB_ALIFM ATP-dependent RNA helicase RhlB OS=Aliivibri...  131     2e-31 
sp|Q9C718|RH20_ARATH DEAD-box ATP-dependent RNA helicase 20 OS=Ar...  132     2e-31 
sp|Q0UAT0|FAL1_PHANO ATP-dependent RNA helicase FAL1 OS=Phaeospha...  129     2e-31 
sp|Q3MSQ8|DDX4_PELLE Probable ATP-dependent RNA helicase DDX4 OS=...  134     2e-31 
sp|Q5E8U5|RHLB_ALIF1 ATP-dependent RNA helicase RhlB OS=Aliivibri...  130     3e-31 
sp|Q0HQL1|RHLB_SHESR ATP-dependent RNA helicase RhlB OS=Shewanell...  131     3e-31 
sp|Q0HN76|RHLB_SHESM ATP-dependent RNA helicase RhlB OS=Shewanell...  131     3e-31 
sp|Q4WPE9|PRP28_ASPFU Pre-mRNA-splicing ATP-dependent RNA helicas...  134     3e-31 
sp|Q9CJS1|RHLB_PASMU ATP-dependent RNA helicase RhlB OS=Pasteurel...  130     3e-31 
sp|Q5QYF8|RHLB_IDILO ATP-dependent RNA helicase RhlB OS=Idiomarin...  130     3e-31 
sp|Q1DMX8|PRP28_COCIM Pre-mRNA-splicing ATP-dependent RNA helicas...  134     3e-31 
sp|Q2HFP1|IF4A_CHAGB ATP-dependent RNA helicase eIF4A OS=Chaetomi...  129     3e-31 
sp|Q0UU86|IF4A_PHANO ATP-dependent RNA helicase eIF4A OS=Phaeosph...  129     4e-31 
sp|Q5BCU6|PRP28_EMENI Pre-mRNA-splicing ATP-dependent RNA helicas...  134     4e-31 
sp|A5A6J2|DDX5_PANTR Probable ATP-dependent RNA helicase DDX5 OS=...  132     5e-31 
sp|P41377|IF4A2_ARATH Eukaryotic initiation factor 4A-2 OS=Arabid...  129     5e-31 
sp|Q1DHB2|PRP5_COCIM Pre-mRNA-processing ATP-dependent RNA helica...  134     5e-31 
sp|Q4P733|DED1_USTMA ATP-dependent RNA helicase DED1 OS=Ustilago ...  132     6e-31 
sp|Q2UH00|PRP28_ASPOR Pre-mRNA-splicing ATP-dependent RNA helicas...  133     6e-31 
sp|Q5QMN3|RH20_ORYSJ DEAD-box ATP-dependent RNA helicase 20 OS=Or...  130     6e-31 
sp|A5DAC8|DBP3_PICGU ATP-dependent RNA helicase DBP3 OS=Meyerozym...  131     6e-31 
sp|P38919|IF4A3_HUMAN Eukaryotic initiation factor 4A-III OS=Homo...  129     7e-31 
sp|P0CQ80|DHH1_CRYNJ ATP-dependent RNA helicase DHH1 OS=Cryptococ...  132     7e-31 
sp|P0CQ81|DHH1_CRYNB ATP-dependent RNA helicase DHH1 OS=Cryptococ...  132     7e-31 
sp|Q4R3Q1|IF4A3_MACFA Eukaryotic initiation factor 4A-III OS=Maca...  129     7e-31 
sp|Q58Z64|DHH1_CRYNH ATP-dependent RNA helicase VAD1 OS=Cryptococ...  132     7e-31 
sp|Q3B8Q2|IF4A3_RAT Eukaryotic initiation factor 4A-III OS=Rattus...  129     7e-31 
sp|A6M931|IF4A3_PIG Eukaryotic initiation factor 4A-III OS=Sus sc...  129     7e-31 
sp|Q2NL22|IF4A3_BOVIN Eukaryotic initiation factor 4A-III OS=Bos ...  129     7e-31 
sp|Q91VC3|IF4A3_MOUSE Eukaryotic initiation factor 4A-III OS=Mus ...  129     8e-31 
sp|Q89AF9|DEAD_BUCBP ATP-dependent RNA helicase DeaD OS=Buchnera ...  132     8e-31 
sp|Q7RV88|IF4A_NEUCR ATP-dependent RNA helicase eIF4A OS=Neurospo...  128     8e-31 
sp|A7EGL7|IF4A_SCLS1 ATP-dependent RNA helicase eIF4A OS=Scleroti...  128     9e-31 
sp|A2QEN5|IF4A_ASPNC ATP-dependent RNA helicase eIF4A OS=Aspergil...  128     1e-30 
sp|Q6CDV4|IF4A_YARLI ATP-dependent RNA helicase eIF4A OS=Yarrowia...  128     1e-30 
sp|A5UDI1|RHLB_HAEIE ATP-dependent RNA helicase RhlB OS=Haemophil...  129     1e-30 
sp|A1SZG4|RHLB_PSYIN ATP-dependent RNA helicase RhlB OS=Psychromo...  128     1e-30 
sp|B5FZY7|IF4A3_TAEGU Eukaryotic initiation factor 4A-III OS=Taen...  128     1e-30 
sp|A4RK80|PRP28_PYRO7 Pre-mRNA-splicing ATP-dependent RNA helicas...  131     1e-30 
sp|Q5ZM36|IF4A3_CHICK Eukaryotic initiation factor 4A-III OS=Gall...  128     1e-30 
sp|A1D373|PRP5_NEOFI Pre-mRNA-processing ATP-dependent RNA helica...  132     1e-30 
sp|Q54CD8|DDX54_DICDI ATP-dependent RNA helicase ddx54 OS=Dictyos...  132     2e-30 
sp|Q4WT99|PRP5_ASPFU Pre-mRNA-processing ATP-dependent RNA helica...  132     2e-30 
sp|A3LQW7|DBP2_PICST ATP-dependent RNA helicase DBP2 OS=Scheffers...  130     2e-30 
sp|A6RJ45|IF4A_BOTFB ATP-dependent RNA helicase eIF4A OS=Botryoti...  127     2e-30 
sp|Q6CCZ1|PRP5_YARLI Pre-mRNA-processing ATP-dependent RNA helica...  132     3e-30 
sp|Q0D1K3|PRP5_ASPTN Pre-mRNA-processing ATP-dependent RNA helica...  132     3e-30 
sp|A1CHL3|PRP28_ASPCL Pre-mRNA-splicing ATP-dependent RNA helicas...  131     3e-30 
sp|Q2U2J6|PRP5_ASPOR Pre-mRNA-processing ATP-dependent RNA helica...  131     3e-30 
sp|A4QVP2|IF4A_PYRO7 ATP-dependent RNA helicase eIF4A OS=Pyricula...  127     3e-30 
sp|P34580|DDX47_CAEEL Putative ATP-dependent RNA helicase T26G10....  128     4e-30 
sp|Q9P7C7|PRP11_SCHPO Pre-mRNA-processing ATP-dependent RNA helic...  131     4e-30 
sp|A1CQA9|PRP5_ASPCL Pre-mRNA-processing ATP-dependent RNA helica...  131     4e-30 
sp|A4RN46|PRP5_PYRO7 Pre-mRNA-processing ATP-dependent RNA helica...  131     4e-30 
sp|Q0E2Z7|RH41_ORYSJ DEAD-box ATP-dependent RNA helicase 41 OS=Or...  129     4e-30 
sp|Q6C024|PRP28_YARLI Pre-mRNA-splicing ATP-dependent RNA helicas...  129     4e-30 
sp|A7TGU7|DHH1_VANPO ATP-dependent RNA helicase DHH1 OS=Vanderwal...  128     4e-30 
sp|A2QQA8|PRP5_ASPNC Pre-mRNA-processing ATP-dependent RNA helica...  131     4e-30 
sp|A6R3R5|IF4A_AJECN ATP-dependent RNA helicase eIF4A OS=Ajellomy...  126     4e-30 
sp|P0CQ98|PRP5_CRYNJ Pre-mRNA-processing ATP-dependent RNA helica...  131     5e-30 
sp|P0CQ99|PRP5_CRYNB Pre-mRNA-processing ATP-dependent RNA helica...  131     5e-30 
sp|Q0CLX0|PRP28_ASPTN Pre-mRNA-splicing ATP-dependent RNA helicas...  130     5e-30 
sp|P0CQ88|PRP28_CRYNJ Pre-mRNA-splicing ATP-dependent RNA helicas...  130     5e-30 
sp|P0CQ89|PRP28_CRYNB Pre-mRNA-splicing ATP-dependent RNA helicas...  130     5e-30 
sp|A1D7N3|IF4A_NEOFI ATP-dependent RNA helicase eIF4A OS=Neosarto...  126     5e-30 
sp|Q41382|RH7_SPIOL DEAD-box ATP-dependent RNA helicase 7 OS=Spin...  130     5e-30 
sp|Q1DQ20|IF4A_COCIM ATP-dependent RNA helicase eIF4A OS=Coccidio...  126     6e-30 
sp|A5DS77|DBP2_LODEL ATP-dependent RNA helicase DBP2 OS=Lodderomy...  128     6e-30 
sp|Q6CB69|DED1_YARLI ATP-dependent RNA helicase DED1 OS=Yarrowia ...  129     6e-30 
sp|Q4WX43|IF4A_ASPFU ATP-dependent RNA helicase eIF4A OS=Aspergil...  126     6e-30 
sp|Q6CT85|RRP3_KLULA ATP-dependent rRNA helicase RRP3 OS=Kluyvero...  127     6e-30 
sp|Q7ZVA6|IF4A3_DANRE Eukaryotic initiation factor 4A-III OS=Dani...  126     7e-30 
sp|Q9VHS8|IF4A3_DROME Eukaryotic initiation factor 4A-III OS=Dros...  125     7e-30 
sp|Q650T9|RH7_ORYSJ DEAD-box ATP-dependent RNA helicase 7 OS=Oryz...  129     9e-30 
sp|Q75BS4|DHH1_EREGS ATP-dependent RNA helicase DHH1 OS=Eremothec...  127     9e-30 
sp|C4LB49|RHLB_TOLAT ATP-dependent RNA helicase RhlB OS=Tolumonas...  126     9e-30 
sp|B7ZTW1|IF4A3_XENTR Eukaryotic initiation factor 4A-III OS=Xeno...  125     9e-30 
sp|Q54Y81|DDX23_DICDI ATP-dependent RNA helicase ddx23 OS=Dictyos...  129     1e-29 
sp|P39517|DHH1_YEAST ATP-dependent RNA helicase DHH1 OS=Saccharom...  127     1e-29 
sp|A6ZXG9|DHH1_YEAS7 ATP-dependent RNA helicase DHH1 OS=Saccharom...  127     1e-29 
sp|Q8W4R3|RH30_ARATH DEAD-box ATP-dependent RNA helicase 30 OS=Ar...  128     1e-29 
sp|Q2UPY3|IF4A_ASPOR ATP-dependent RNA helicase eIF4A OS=Aspergil...  125     1e-29 
sp|Q5N7W4|RH30_ORYSJ DEAD-box ATP-dependent RNA helicase 30 OS=Or...  129     1e-29 
sp|Q7SEL0|PRP28_NEUCR Pre-mRNA-splicing ATP-dependent RNA helicas...  129     1e-29 
sp|Q54IV3|DDX42_DICDI Probable ATP-dependent RNA helicase ddx42 O...  129     1e-29 
sp|A7ENE0|PRP5_SCLS1 Pre-mRNA-processing ATP-dependent RNA helica...  130     1e-29 
sp|Q6BRN4|IF4A_DEBHA ATP-dependent RNA helicase eIF4A OS=Debaryom...  125     1e-29 
sp|B5DG42|IF4A3_SALSA Eukaryotic initiation factor 4A-III OS=Salm...  125     1e-29 
sp|O42226|I4A3B_XENLA Eukaryotic initiation factor 4A-III-B OS=Xe...  125     1e-29 
sp|A6RW79|PRP5_BOTFB Pre-mRNA-processing ATP-dependent RNA helica...  129     1e-29 
sp|A5DB98|IF4A_PICGU ATP-dependent RNA helicase eIF4A OS=Meyerozy...  125     2e-29 
sp|Q8SRB2|DBP2_ENCCU ATP-dependent RNA helicase DBP2 OS=Encephali...  126     2e-29 
sp|Q26696|DDX17_TRYBB Putative DEAD-box RNA helicase HEL64 OS=Try...  127     2e-29 
sp|Q2HEB0|PRP28_CHAGB Pre-mRNA-splicing ATP-dependent RNA helicas...  128     2e-29 
sp|Q9WTM2|DDX6_CAVPO Probable ATP-dependent RNA helicase DDX6 (Fr...  126     2e-29 
sp|A5DVM3|IF4A_LODEL ATP-dependent RNA helicase eIF4A OS=Lodderom...  124     2e-29 
sp|O49289|RH29_ARATH Putative DEAD-box ATP-dependent RNA helicase...  128     2e-29 
sp|A4R5B8|DBP10_PYRO7 ATP-dependent RNA helicase DBP10 OS=Pyricul...  128     2e-29 
sp|Q64060|DDX4_RAT Probable ATP-dependent RNA helicase DDX4 OS=Ra...  128     2e-29 
sp|Q0I1X0|RHLB_HISS1 ATP-dependent RNA helicase RhlB OS=Histophil...  124     3e-29 
sp|P54475|CSHB_BACSU DEAD-box ATP-dependent RNA helicase CshB OS=...  125     3e-29 
sp|Q5BDW4|PRP5_EMENI Pre-mRNA-processing ATP-dependent RNA helica...  129     3e-29 
sp|A4R715|DHH1_PYRO7 ATP-dependent RNA helicase DHH1 OS=Pyricular...  126     3e-29 
sp|Q7Y183|RH10_ORYSJ DEAD-box ATP-dependent RNA helicase 10 OS=Or...  125     3e-29 
sp|A2XKG2|RH10_ORYSI DEAD-box ATP-dependent RNA helicase 10 OS=Or...  125     3e-29 
sp|A5DU73|PRP28_LODEL Pre-mRNA-splicing ATP-dependent RNA helicas...  127     3e-29 
sp|P87206|IF4A_CANAL ATP-dependent RNA helicase eIF4A OS=Candida ...  124     4e-29 
sp|A3GFI4|IF4A_PICST ATP-dependent RNA helicase eIF4A OS=Scheffer...  124     4e-29 
sp|Q1E5R1|DHH1_COCIM ATP-dependent RNA helicase DHH1 OS=Coccidioi...  125     4e-29 
sp|Q6FQU5|DHH1_CANGA ATP-dependent RNA helicase DHH1 OS=Candida g...  125     4e-29 
sp|B0UUZ9|RHLB_HISS2 ATP-dependent RNA helicase RhlB OS=Histophil...  124     4e-29 
sp|Q4JG17|VASAL_PENVA Probable ATP-dependent RNA helicase vasa-li...  127     4e-29 
sp|A7TS37|RRP3_VANPO ATP-dependent rRNA helicase RRP3 OS=Vanderwa...  125     4e-29 
sp|Q6GWX0|DDX4_PIG Probable ATP-dependent RNA helicase DDX4 OS=Su...  127     4e-29 
sp|A2QIL2|PRP28_ASPNC Pre-mRNA-splicing ATP-dependent RNA helicas...  127     4e-29 
sp|Q9M2E0|RH12_ARATH DEAD-box ATP-dependent RNA helicase 12 OS=Ar...  125     4e-29 
sp|P54823|DDX6_MOUSE Probable ATP-dependent RNA helicase DDX6 OS=...  125     5e-29 
sp|Q4HW67|DHH1_GIBZE ATP-dependent RNA helicase DHH1 OS=Gibberell...  125     5e-29 
sp|A5DF03|PRP28_PICGU Pre-mRNA-splicing ATP-dependent RNA helicas...  126     5e-29 
sp|Q38F76|IF4A_TRYB2 Probable eukaryotic initiation factor 4A OS=...  123     5e-29 
sp|A7TGW7|DBP10_VANPO ATP-dependent RNA helicase DBP10 OS=Vanderw...  127     5e-29 
sp|Q4R5S7|DDX4_MACFA Probable ATP-dependent RNA helicase DDX4 OS=...  127     5e-29 
sp|A4QYM6|DRS1_PYRO7 ATP-dependent RNA helicase DRS1 OS=Pyricular...  127     5e-29 
sp|Q5ZKB9|DDX6_CHICK Probable ATP-dependent RNA helicase DDX6 OS=...  125     5e-29 
sp|Q2UQI6|DRS1_ASPOR ATP-dependent RNA helicase drs1 OS=Aspergill...  127     5e-29 
sp|Q7S5D9|DHH1_NEUCR ATP-dependent RNA helicase dhh1 OS=Neurospor...  125     5e-29 
sp|Q9NQI0|DDX4_HUMAN Probable ATP-dependent RNA helicase DDX4 OS=...  127     5e-29 
sp|P26196|DDX6_HUMAN Probable ATP-dependent RNA helicase DDX6 OS=...  124     6e-29 
sp|Q0UWC8|PRP28_PHANO Pre-mRNA-splicing ATP-dependent RNA helicas...  127     6e-29 
sp|Q94BV4|RH6_ARATH DEAD-box ATP-dependent RNA helicase 6 OS=Arab...  125     6e-29 
sp|P38712|RRP3_YEAST ATP-dependent rRNA helicase RRP3 OS=Saccharo...  125     6e-29 
sp|P47943|IF4A_SCHPO ATP-dependent RNA helicase eIF4A OS=Schizosa...  123     7e-29 
sp|Q9DF35|DD21A_XENLA Nucleolar RNA helicase 2-A OS=Xenopus laevi...  127     7e-29 
sp|Q5B3H7|DBP8_EMENI ATP-dependent RNA helicase dbp8 OS=Emericell...  125     8e-29 
sp|Q9BUQ8|DDX23_HUMAN Probable ATP-dependent RNA helicase DDX23 O...  127     8e-29 
sp|Q10MH8|RH24_ORYSJ DEAD-box ATP-dependent RNA helicase 24 OS=Or...  126     9e-29 
sp|Q6C7X8|DBP10_YARLI ATP-dependent RNA helicase DBP10 OS=Yarrowi...  127     9e-29 
sp|Q4I7F9|PRP28_GIBZE Pre-mRNA-splicing ATP-dependent RNA helicas...  126     9e-29 
sp|Q9NR30|DDX21_HUMAN Nucleolar RNA helicase 2 OS=Homo sapiens OX...  126     1e-28 
sp|Q4E162|IF4A_TRYCC Probable eukaryotic initiation factor 4A OS=...  122     1e-28 
sp|A5AA68|DBP8_ASPNC ATP-dependent RNA helicase dbp8 OS=Aspergill...  124     1e-28 
sp|Q8RXK6|RH8_ARATH DEAD-box ATP-dependent RNA helicase 8 OS=Arab...  124     1e-28 
sp|Q553B1|DDX46_DICDI ATP-dependent RNA helicase ddx46 OS=Dictyos...  127     1e-28 
sp|Q0U7S9|DHH1_PHANO ATP-dependent RNA helicase DHH1 OS=Phaeospha...  124     1e-28 
sp|Q2H0R2|DBP10_CHAGB ATP-dependent RNA helicase DBP10 OS=Chaetom...  126     1e-28 
sp|Q6BLU9|PRP28_DEBHA Pre-mRNA-splicing ATP-dependent RNA helicas...  125     1e-28 
sp|Q8NJM2|DBP10_ASPFU ATP-dependent RNA helicase dbp10 OS=Aspergi...  126     1e-28 
sp|Q39189|RH7_ARATH DEAD-box ATP-dependent RNA helicase 7 OS=Arab...  125     1e-28 
sp|Q5U526|I4A3A_XENLA Eukaryotic initiation factor 4A-III-A OS=Xe...  122     1e-28 
sp|Q0IHV9|DDX6_XENTR Probable ATP-dependent RNA helicase ddx6 OS=...  123     1e-28 
sp|Q2UHC1|DBP10_ASPOR ATP-dependent RNA helicase dbp10 OS=Aspergi...  126     1e-28 
sp|A6ZSX1|RRP3_YEAS7 ATP-dependent rRNA helicase RRP3 OS=Saccharo...  124     1e-28 
sp|Q5BFU7|DBP10_EMENI ATP-dependent RNA helicase dbp10 OS=Emerice...  126     1e-28 
sp|P44922|RHLB_HAEIN ATP-dependent RNA helicase RhlB OS=Haemophil...  122     1e-28 
sp|P21507|SRMB_ECOLI ATP-dependent RNA helicase SrmB OS=Escherich...  122     1e-28 
sp|Q61496|DDX4_MOUSE ATP-dependent RNA helicase DDX4 OS=Mus muscu...  125     1e-28 
sp|Q4P331|IF4A_USTMA ATP-dependent RNA helicase eIF4A OS=Ustilago...  122     2e-28 
sp|Q5W5U4|DDX4_BOVIN Probable ATP-dependent RNA helicase DDX4 OS=...  125     2e-28 
sp|A3LWX3|DHH1_PICST ATP-dependent RNA helicase DHH1 OS=Scheffers...  123     2e-28 
sp|A2QY39|DHH1_ASPNC ATP-dependent RNA helicase dhh1 OS=Aspergill...  123     2e-28 
sp|Q7XMK8|RH6_ORYSJ DEAD-box ATP-dependent RNA helicase 6 OS=Oryz...  123     2e-28 
sp|Q9JIK5|DDX21_MOUSE Nucleolar RNA helicase 2 OS=Mus musculus OX...  125     2e-28 
sp|P54824|DDX6_XENLA ATP-dependent RNA helicase ddx6 OS=Xenopus l...  122     2e-28 
sp|Q5ADL0|PRP5_CANAL Pre-mRNA-processing ATP-dependent RNA helica...  125     2e-28 
sp|A6ZXU0|DBP10_YEAS7 ATP-dependent RNA helicase DBP10 OS=Sacchar...  125     3e-28 
sp|Q6FNK8|RRP3_CANGA ATP-dependent rRNA helicase RRP3 OS=Candida ...  122     3e-28 
sp|Q54E49|DDX6_DICDI Probable ATP-dependent RNA helicase ddx6 OS=...  121     3e-28 
sp|Q3B8Q1|DDX21_RAT Nucleolar RNA helicase 2 OS=Rattus norvegicus...  125     3e-28 
sp|Q12389|DBP10_YEAST ATP-dependent RNA helicase DBP10 OS=Sacchar...  125     3e-28 
sp|Q9DF36|DD21B_XENLA Nucleolar RNA helicase 2-B OS=Xenopus laevi...  125     3e-28 
sp|Q4HZ42|DBP10_GIBZE ATP-dependent RNA helicase DBP10 OS=Gibbere...  125     3e-28 
sp|Q75EW9|RRP3_EREGS ATP-dependent rRNA helicase RRP3 OS=Eremothe...  122     3e-28 
sp|A1CJ18|DHH1_ASPCL ATP-dependent RNA helicase dhh1 OS=Aspergill...  122     3e-28 
sp|A1DNG2|DBP10_NEOFI ATP-dependent RNA helicase dbp10 OS=Neosart...  125     3e-28 
sp|Q0CMM8|DBP10_ASPTN ATP-dependent RNA helicase dbp10 OS=Aspergi...  125     4e-28 
sp|Q109G2|RH12_ORYSJ DEAD-box ATP-dependent RNA helicase 12 OS=Or...  122     4e-28 
sp|D0PV95|DDX3_CAEEL ATP-dependent RNA helicase laf-1 OS=Caenorha...  124     4e-28 
sp|Q2U5A2|DHH1_ASPOR ATP-dependent RNA helicase dhh1 OS=Aspergill...  122     4e-28 
sp|Q5RC67|DDX23_PONAB Probable ATP-dependent RNA helicase DDX23 O...  124     5e-28 
sp|Q2UKX3|DBP8_ASPOR ATP-dependent RNA helicase dbp8 OS=Aspergill...  121     5e-28 
sp|Q9P6N8|RRP3_SCHPO ATP-dependent rRNA helicase rrp3 OS=Schizosa...  121     5e-28 
sp|A5DDF4|PRP5_PICGU Pre-mRNA-processing ATP-dependent RNA helica...  124     5e-28 
sp|Q0CBE1|DHH1_ASPTN ATP-dependent RNA helicase dhh1 OS=Aspergill...  122     6e-28 
sp|Q4PFD9|PRP5_USTMA Pre-mRNA-processing ATP-dependent RNA helica...  124     6e-28 
sp|Q4WWD3|DHH1_ASPFU ATP-dependent RNA helicase dhh1 OS=Aspergill...  122     7e-28 
sp|Q09181|DHH1_SCHPO Putative ATP-dependent RNA helicase ste13 OS...  121     8e-28 
sp|A4RIF1|DBP5_PYRO7 ATP-dependent RNA helicase DBP5 OS=Pyricular...  121     8e-28 
sp|P0C2N8|DRS1_NEUCR ATP-dependent RNA helicase drs1 OS=Neurospor...  123     8e-28 
sp|Q6BL34|DBP10_DEBHA ATP-dependent RNA helicase DBP10 OS=Debaryo...  124     9e-28 
sp|Q2H1Q8|RRP3_CHAGB ATP-dependent rRNA helicase RRP3 OS=Chaetomi...  121     1e-27 
sp|Q6H7S2|RH8_ORYSJ DEAD-box ATP-dependent RNA helicase 8 OS=Oryz...  121     1e-27 
sp|A6QUM7|DBP10_AJECN ATP-dependent RNA helicase DBP10 OS=Ajellom...  123     1e-27 
sp|Q8GY84|RH10_ARATH DEAD-box ATP-dependent RNA helicase 10 OS=Ar...  120     1e-27 
sp|Q4R4Y9|IF4A2_MACFA Eukaryotic initiation factor 4A-II OS=Macac...  119     1e-27 
sp|A1CTZ6|DBP10_ASPCL ATP-dependent RNA helicase dbp10 OS=Aspergi...  123     1e-27 
sp|Q4HY71|DBP5_GIBZE ATP-dependent RNA helicase DBP5 OS=Gibberell...  120     1e-27 
sp|Q5T1V6|DDX59_HUMAN Probable ATP-dependent RNA helicase DDX59 O...  122     1e-27 
sp|Q4I830|DRS1_GIBZE ATP-dependent RNA helicase DRS1 OS=Gibberell...  122     1e-27 
sp|Q75BL8|IF4A_EREGS ATP-dependent RNA helicase eIF4A OS=Eremothe...  119     1e-27 
sp|Q0CZN5|DRS1_ASPTN ATP-dependent RNA helicase drs1 OS=Aspergill...  122     2e-27 
sp|Q2GQ93|DHH1_CHAGB ATP-dependent RNA helicase DHH1 OS=Chaetomiu...  120     2e-27 
sp|Q1E2B2|DRS1_COCIM ATP-dependent RNA helicase DRS1 OS=Coccidioi...  122     2e-27 
sp|Q59W52|PRP28_CANAL Pre-mRNA-splicing ATP-dependent RNA helicas...  121     2e-27 
sp|A6RC50|DBP5_AJECN ATP-dependent RNA helicase DBP5 OS=Ajellomyc...  120     2e-27 
sp|P23128|DDX6_DROME ATP-dependent RNA helicase me31b OS=Drosophi...  120     2e-27 
sp|Q6CT49|PRP28_KLULA Pre-mRNA-splicing ATP-dependent RNA helicas...  121     2e-27 
sp|P44701|SRMB_HAEIN ATP-dependent RNA helicase SrmB OS=Haemophil...  119     2e-27 
sp|Q818H2|CSHB_BACCR DEAD-box ATP-dependent RNA helicase CshB OS=...  119     2e-27 
sp|Q0CIQ3|RRP3_ASPTN ATP-dependent rRNA helicase rrp3 OS=Aspergil...  119     2e-27 
sp|A3LZT3|DBP10_PICST ATP-dependent RNA helicase DBP10 OS=Scheffe...  122     2e-27 
sp|A6RJA2|PRP28_BOTFB Pre-mRNA-splicing ATP-dependent RNA helicas...  122     3e-27 
sp|Q8TDD1|DDX54_HUMAN ATP-dependent RNA helicase DDX54 OS=Homo sa...  122     3e-27 
sp|O22907|RH24_ARATH DEAD-box ATP-dependent RNA helicase 24 OS=Ar...  121     3e-27 
sp|A2QRY2|DBP10_ASPNC ATP-dependent RNA helicase dbp10 OS=Aspergi...  122     3e-27 
sp|A6RY31|DHH1_BOTFB ATP-dependent RNA helicase dhh1 OS=Botryotin...  120     3e-27 
sp|Q6CH58|RRP3_YARLI ATP-dependent rRNA helicase RRP3 OS=Yarrowia...  119     3e-27 
sp|Q4P9P3|DRS1_USTMA ATP-dependent RNA helicase DRS1 OS=Ustilago ...  121     4e-27 
sp|Q65RG7|RHLB_MANSM ATP-dependent RNA helicase RhlB OS=Mannheimi...  118     4e-27 
sp|A2RB17|RRP3_ASPNC ATP-dependent rRNA helicase rrp3 OS=Aspergil...  119     5e-27 
sp|Q6FM43|PRP28_CANGA Pre-mRNA-splicing ATP-dependent RNA helicas...  120     5e-27 
sp|Q1EB38|DBP10_COCIM ATP-dependent RNA helicase DBP10 OS=Coccidi...  121     6e-27 
sp|Q6BRE4|DBP5_DEBHA ATP-dependent RNA helicase DBP5 OS=Debaryomy...  119     6e-27 
sp|A3LQ55|PRP5_PICST Pre-mRNA-processing ATP-dependent RNA helica...  120     6e-27 
sp|Q5RFQ5|DDX6_PONAB Probable ATP-dependent RNA helicase DDX6 OS=...  118     6e-27 
sp|Q56X76|RH39_ARATH DEAD-box ATP-dependent RNA helicase 39 OS=Ar...  119     7e-27 
sp|Q6CXT4|IF4A_KLULA ATP-dependent RNA helicase eIF4A OS=Kluyvero...  117     7e-27 
sp|Q15N18|RHLB_PSEA6 ATP-dependent RNA helicase RhlB OS=Pseudoalt...  117     8e-27 
sp|A1D6X9|DBP8_NEOFI ATP-dependent RNA helicase dbp8 OS=Neosartor...  119     8e-27 
sp|Q4PDT1|DBP3_USTMA ATP-dependent RNA helicase DBP3 OS=Ustilago ...  119     9e-27 
sp|P23394|PRP28_YEAST Pre-mRNA-splicing ATP-dependent RNA helicas...  119     1e-26 
sp|A3LNL1|PRP28_PICST Pre-mRNA-splicing ATP-dependent RNA helicas...  118     1e-26 
sp|Q4FZF3|DDX49_MOUSE Probable ATP-dependent RNA helicase DDX49 O...  118     1e-26 
sp|A1CKJ0|DBP8_ASPCL ATP-dependent RNA helicase dbp8 OS=Aspergill...  118     1e-26 
sp|Q8K4L0|DDX54_MOUSE ATP-dependent RNA helicase DDX54 OS=Mus mus...  120     1e-26 
sp|Q7S9J4|DBP10_NEUCR ATP-dependent RNA helicase dbp-10 OS=Neuros...  120     1e-26 
sp|Q4WCW2|SUB2_ASPFU ATP-dependent RNA helicase sub2 OS=Aspergill...  117     1e-26 
sp|A3LS22|RRP3_PICST ATP-dependent rRNA helicase RRP3 OS=Scheffer...  117     1e-26 
sp|A2QAX7|DRS1_ASPNC ATP-dependent RNA helicase drs1 OS=Aspergill...  120     1e-26 
sp|Q5RKI1|IF4A2_RAT Eukaryotic initiation factor 4A-II OS=Rattus ...  116     1e-26 
sp|Q5R4X1|IF4A2_PONAB Eukaryotic initiation factor 4A-II OS=Pongo...  116     1e-26 
sp|P10630|IF4A2_MOUSE Eukaryotic initiation factor 4A-II OS=Mus m...  116     1e-26 
sp|Q14240|IF4A2_HUMAN Eukaryotic initiation factor 4A-II OS=Homo ...  116     1e-26 
sp|Q3SZ65|IF4A2_BOVIN Eukaryotic initiation factor 4A-II OS=Bos t...  116     1e-26 
sp|Q8JFP1|IF4A2_CHICK Eukaryotic initiation factor 4A-II OS=Gallu...  116     1e-26 
sp|A5E058|PRP5_LODEL Pre-mRNA-processing ATP-dependent RNA helica...  120     1e-26 
sp|P0CQ74|DED1_CRYNJ ATP-dependent RNA helicase ded1 OS=Cryptococ...  119     1e-26 
sp|P0CQ75|DED1_CRYNB ATP-dependent RNA helicase ded1 OS=Cryptococ...  119     1e-26 
sp|Q9Y7T7|PRP28_SCHPO Pre-mRNA-splicing ATP-dependent RNA helicas...  119     2e-26 
sp|Q0V1Z7|DRS1_PHANO ATP-dependent RNA helicase DRS1 OS=Phaeospha...  119     2e-26 
sp|Q4TVV3|DDX46_DANRE Probable ATP-dependent RNA helicase DDX46 O...  119     2e-26 
sp|A1D8G1|DHH1_NEOFI ATP-dependent RNA helicase dhh1 OS=Neosartor...  117     2e-26 
sp|A7EGG4|PRP28_SCLS1 Pre-mRNA-splicing ATP-dependent RNA helicas...  119     2e-26 
sp|A1CYG5|DBP5_NEOFI ATP-dependent RNA helicase dbp5 OS=Neosartor...  117     2e-26 
sp|A1D405|RRP3_NEOFI ATP-dependent rRNA helicase rrp3 OS=Neosarto...  117     2e-26 
sp|Q4R8K5|IF4A1_MACFA Eukaryotic initiation factor 4A-I OS=Macaca...  115     2e-26 
sp|P60843|IF4A1_MOUSE Eukaryotic initiation factor 4A-I OS=Mus mu...  115     2e-26 
sp|P60842|IF4A1_HUMAN Eukaryotic initiation factor 4A-I OS=Homo s...  115     2e-26 
sp|Q3SZ54|IF4A1_BOVIN Eukaryotic initiation factor 4A-I OS=Bos ta...  115     2e-26 
sp|O34750|YFML_BACSU Probable ATP-dependent RNA helicase YfmL OS=...  115     2e-26 
sp|Q2HGF7|DBP5_CHAGB ATP-dependent RNA helicase DBP5 OS=Chaetomiu...  116     3e-26 
sp|A7ESL7|DBP10_SCLS1 ATP-dependent RNA helicase dbp10 OS=Sclerot...  119     3e-26 
sp|Q53RK8|RH21_ORYSJ DEAD-box ATP-dependent RNA helicase 21 OS=Or...  118     3e-26 
sp|Q6BML1|PRP5_DEBHA Pre-mRNA-processing ATP-dependent RNA helica...  119     3e-26 
sp|A1DL85|SUB2_NEOFI ATP-dependent RNA helicase sub2 OS=Neosartor...  116     3e-26 
sp|Q879Y6|RHLB_XYLFT ATP-dependent RNA helicase RhlB OS=Xylella f...  117     3e-26 
sp|P0CR00|RRP3_CRYNJ ATP-dependent rRNA helicase RRP3 OS=Cryptoco...  116     3e-26 
sp|P0CR01|RRP3_CRYNB ATP-dependent rRNA helicase RRP3 OS=Cryptoco...  116     3e-26 
sp|P29562|IF4A1_RABIT Eukaryotic initiation factor 4A-I (Fragment...  115     3e-26 
sp|Q5R5F5|IF4A1_PONAB Eukaryotic initiation factor 4A-I OS=Pongo ...  115     3e-26 
sp|Q6CJU1|DBP5_KLULA ATP-dependent RNA helicase DBP5 OS=Kluyverom...  116     3e-26 
sp|Q9DBN9|DDX59_MOUSE Probable ATP-dependent RNA helicase DDX59 O...  117     4e-26 
sp|Q4IFI0|RRP3_GIBZE ATP-dependent rRNA helicase RRP3 OS=Gibberel...  116     4e-26 
sp|Q9Y6V7|DDX49_HUMAN Probable ATP-dependent RNA helicase DDX49 O...  116     4e-26 
sp|Q757U8|DBP10_EREGS ATP-dependent RNA helicase DBP10 OS=Eremoth...  118     5e-26 
sp|A6R9U4|MAK5_AJECN ATP-dependent RNA helicase MAK5 OS=Ajellomyc...  118     5e-26 
sp|Q4WIN6|DBP5_ASPFU ATP-dependent RNA helicase dbp5 OS=Aspergill...  116     5e-26 
sp|Q4WXW1|DBP8_ASPFU ATP-dependent RNA helicase dbp8 OS=Aspergill...  116     5e-26 
sp|Q59PR3|DBP8_CANAL ATP-dependent RNA helicase DBP8 OS=Candida a...  115     5e-26 
sp|Q6FQQ6|IF4A_CANGA ATP-dependent RNA helicase eIF4A OS=Candida ...  114     5e-26 
sp|Q61655|DD19A_MOUSE ATP-dependent RNA helicase DDX19A OS=Mus mu...  115     5e-26 
sp|Q2U6P7|SUB2_ASPOR ATP-dependent RNA helicase sub2 OS=Aspergill...  115     6e-26 
sp|Q1E0Z3|DBP8_COCIM ATP-dependent RNA helicase DBP8 OS=Coccidioi...  116     6e-26 
sp|A2R0B5|SUB2_ASPNC ATP-dependent RNA helicase sub2 OS=Aspergill...  115     6e-26 
sp|Q8GUG7|RH50_ARATH DEAD-box ATP-dependent RNA helicase 50 OS=Ar...  117     7e-26 
sp|A1D1R8|DRS1_NEOFI ATP-dependent RNA helicase drs1 OS=Neosartor...  117     7e-26 
sp|Q6CIR0|DBP10_KLULA ATP-dependent RNA helicase DBP10 OS=Kluyver...  117     8e-26 
sp|Q1EB85|DBP5_COCIM ATP-dependent RNA helicase DBP5 OS=Coccidioi...  115     8e-26 
sp|A7TK55|IF4A_VANPO ATP-dependent RNA helicase eIF4A OS=Vanderwa...  114     8e-26 
sp|Q6BQ61|RRP3_DEBHA ATP-dependent rRNA helicase RRP3 OS=Debaryom...  115     8e-26 
sp|A5E6W6|RRP3_LODEL ATP-dependent rRNA helicase RRP3 OS=Lodderom...  115     8e-26 
sp|Q8X0X2|DBP5_NEUCR ATP-dependent RNA helicase dbp-5 OS=Neurospo...  115     8e-26 
sp|Q4WJE9|RRP3_ASPFU ATP-dependent rRNA helicase rrp3 OS=Aspergil...  115     8e-26 
sp|Q6FKN8|DBP5_CANGA ATP-dependent RNA helicase DBP5 OS=Candida g...  115     8e-26 
sp|P93008|RH21_ARATH DEAD-box ATP-dependent RNA helicase 21 OS=Ar...  117     9e-26 
sp|A5A6N4|IF4A1_PANTR Eukaryotic initiation factor 4A-I OS=Pan tr...  114     9e-26 
sp|Q2FY15|CSHB_STAA8 DEAD-box ATP-dependent RNA helicase CshB OS=...  114     9e-26 
sp|Q5GUR8|RHLB_XANOR ATP-dependent RNA helicase RhlB OS=Xanthomon...  116     9e-26 
sp|A6SBT4|DBP5_BOTFB ATP-dependent RNA helicase dbp5 OS=Botryotin...  114     1e-25 
sp|A1CMQ7|SUB2_ASPCL ATP-dependent RNA helicase sub2 OS=Aspergill...  114     1e-25 
sp|A5DY34|DRS1_LODEL ATP-dependent RNA helicase DRS1 OS=Lodderomy...  116     1e-25 
sp|Q40469|IF4A6_TOBAC Eukaryotic initiation factor 4A-6 (Fragment...  110     1e-25 
sp|A1CNV8|DRS1_ASPCL ATP-dependent RNA helicase drs1 OS=Aspergill...  117     1e-25 
sp|A5DZX2|DBP5_LODEL ATP-dependent RNA helicase DBP5 OS=Lodderomy...  115     1e-25 
sp|Q810A7|DDX42_MOUSE ATP-dependent RNA helicase DDX42 OS=Mus mus...  117     1e-25 
sp|Q9LFN6|RH56_ARATH DEAD-box ATP-dependent RNA helicase 56 OS=Ar...  113     1e-25 
sp|Q56XG6|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15 OS=Ar...  113     1e-25 
sp|Q9UMR2|DD19B_HUMAN ATP-dependent RNA helicase DDX19B OS=Homo s...  114     1e-25 
sp|Q86XP3|DDX42_HUMAN ATP-dependent RNA helicase DDX42 OS=Homo sa...  116     1e-25 
sp|Q7ZY47|DDX42_XENLA ATP-dependent RNA helicase DDX42 OS=Xenopus...  116     1e-25 
sp|Q2UNB7|RRP3_ASPOR ATP-dependent rRNA helicase rrp3 OS=Aspergil...  114     2e-25 
sp|Q4P3U9|RRP3_USTMA ATP-dependent rRNA helicase RRP3 OS=Ustilago...  115     2e-25 
sp|Q750Q4|MS116_EREGS ATP-dependent RNA helicase MSS116, mitochon...  115     2e-25 
sp|Q3ZBV2|DD19A_BOVIN ATP-dependent RNA helicase DDX19A OS=Bos ta...  114     2e-25 
sp|Q5VRY0|RH39_ORYSJ DEAD-box ATP-dependent RNA helicase 39 OS=Or...  115     2e-25 
sp|Q4WRV2|DRS1_ASPFU ATP-dependent RNA helicase drs1 OS=Aspergill...  116     2e-25 
sp|P10081|IF4A_YEAST ATP-dependent RNA helicase eIF4A OS=Saccharo...  112     2e-25 
sp|A6ZQJ1|IF4A_YEAS7 ATP-dependent RNA helicase eIF4A OS=Saccharo...  112     2e-25 
sp|A7EML8|RRP3_SCLS1 ATP-dependent rRNA helicase rrp3 OS=Scleroti...  114     2e-25 
sp|Q5ACK7|DRS1_CANAL ATP-dependent RNA helicase DRS1 OS=Candida a...  115     2e-25 
sp|Q5R7D1|DDX42_PONAB ATP-dependent RNA helicase DDX42 OS=Pongo a...  115     3e-25 
sp|Q3BNH8|RHLB_XANC5 ATP-dependent RNA helicase RhlB OS=Xanthomon...  114     3e-25 
sp|Q86TM3|DDX53_HUMAN Probable ATP-dependent RNA helicase DDX53 O...  115     3e-25 
sp|Q8PFZ3|RHLB_XANAC ATP-dependent RNA helicase RhlB OS=Xanthomon...  114     3e-25 
sp|A6R603|SUB2_AJECN ATP-dependent RNA helicase SUB2 OS=Ajellomyc...  113     3e-25 
sp|A1CR32|RRP3_ASPCL ATP-dependent rRNA helicase rrp3 OS=Aspergil...  113     3e-25 
sp|A5DQF1|RRP3_PICGU ATP-dependent rRNA helicase RRP3 OS=Meyerozy...  113     3e-25 
sp|Q8P4D4|RHLB_XANCP ATP-dependent RNA helicase RhlB OS=Xanthomon...  114     3e-25 
sp|B0RWT6|RHLB_XANCB ATP-dependent RNA helicase RhlB OS=Xanthomon...  114     3e-25 
sp|Q4UPY5|RHLB_XANC8 ATP-dependent RNA helicase RhlB OS=Xanthomon...  114     3e-25 
sp|Q7RY59|RRP3_NEUCR ATP-dependent rRNA helicase rrp-3 OS=Neurosp...  114     3e-25 
sp|Q921N6|DDX27_MOUSE Probable ATP-dependent RNA helicase DDX27 O...  115     4e-25 
sp|Q0CGJ9|SUB2_ASPTN ATP-dependent RNA helicase sub2 OS=Aspergill...  112     4e-25 
sp|A1A4H6|DDX27_BOVIN Probable ATP-dependent RNA helicase DDX27 O...  115     4e-25 
sp|P0CQ86|DBP5_CRYNJ ATP-dependent RNA helicase DBP5 OS=Cryptococ...  114     4e-25 
sp|Q5ASK8|SUB2_EMENI ATP-dependent RNA helicase sub2 OS=Emericell...  112     4e-25 
sp|P0CQ82|DBP4_CRYNJ ATP-dependent RNA helicase DBP4 OS=Cryptococ...  115     4e-25 
sp|P0CQ83|DBP4_CRYNB ATP-dependent RNA helicase DBP4 OS=Cryptococ...  115     4e-25 
sp|Q9FLB0|RH18_ARATH DEAD-box ATP-dependent RNA helicase 18 OS=Ar...  114     5e-25 
sp|Q9NUU7|DD19A_HUMAN ATP-dependent RNA helicase DDX19A OS=Homo s...  112     6e-25 
sp|P0CQ87|DBP5_CRYNB ATP-dependent RNA helicase DBP5 OS=Cryptococ...  113     6e-25 
sp|P20449|DBP5_YEAST ATP-dependent RNA helicase DBP5 OS=Saccharom...  112     7e-25 
sp|A6ZNQ1|DBP5_YEAS7 ATP-dependent RNA helicase DBP5 OS=Saccharom...  112     7e-25 
sp|Q9HGM5|DBP8_SCHPO ATP-dependent RNA helicase dbp8 OS=Schizosac...  112     7e-25 
sp|Q2H4D0|SUB2_CHAGB ATP-dependent RNA helicase SUB2 OS=Chaetomiu...  111     8e-25 
sp|Q5F485|DDX42_CHICK ATP-dependent RNA helicase DDX42 OS=Gallus ...  114     9e-25 
sp|Q6FNA2|DBP10_CANGA ATP-dependent RNA helicase DBP10 OS=Candida...  114     1e-24 
sp|Q6CH90|SUB2_YARLI ATP-dependent RNA helicase SUB2 OS=Yarrowia ...  111     1e-24 
sp|Q4P3W3|DBP10_USTMA ATP-dependent RNA helicase DBP10 OS=Ustilag...  114     1e-24 
sp|Q96GQ7|DDX27_HUMAN Probable ATP-dependent RNA helicase DDX27 O...  113     1e-24 
sp|A4RBS3|SUB2_PYRO7 ATP-dependent RNA helicase SUB2 OS=Pyricular...  110     1e-24 
sp|Q6FW42|DRS1_CANGA ATP-dependent RNA helicase DRS1 OS=Candida g...  113     1e-24 
sp|Q6BGU8|DBP8_DEBHA ATP-dependent RNA helicase DBP8 OS=Debaryomy...  110     2e-24 
sp|P0CQ92|DRS1_CRYNJ ATP-dependent RNA helicase DRS1 OS=Cryptococ...  113     2e-24 
sp|P0CQ93|DRS1_CRYNB ATP-dependent RNA helicase DRS1 OS=Cryptococ...  113     2e-24 
sp|Q759L6|SUB2_EREGS ATP-dependent RNA helicase SUB2 OS=Eremothec...  110     2e-24 
sp|Q1DI07|SUB2_COCIM ATP-dependent RNA helicase SUB2 OS=Coccidioi...  110     2e-24 
sp|A7F4L5|DRS1_SCLS1 ATP-dependent RNA helicase drs1 OS=Sclerotin...  112     2e-24 
sp|Q0U8V9|DBP8_PHANO ATP-dependent RNA helicase DBP8 OS=Phaeospha...  111     2e-24 
sp|Q0CNX1|DBP8_ASPTN ATP-dependent RNA helicase dbp8 OS=Aspergill...  111     3e-24 
sp|Q0JM17|RH56_ORYSJ DEAD-box ATP-dependent RNA helicase 56 OS=Or...  110     3e-24 
sp|A6RUH2|DRS1_BOTFB ATP-dependent RNA helicase drs1 OS=Botryotin...  112     3e-24 
sp|Q5ACU6|RRP3_CANAL ATP-dependent rRNA helicase RRP3 OS=Candida ...  110     3e-24 
sp|Q5JK84|RH15_ORYSJ DEAD-box ATP-dependent RNA helicase 15 OS=Or...  109     3e-24 
sp|Q8VDM6|HNRL1_MOUSE Heterogeneous nuclear ribonucleoprotein U-l...  112     3e-24 
sp|Q9CWX9|DDX47_MOUSE Probable ATP-dependent RNA helicase DDX47 O...  109     4e-24 
sp|A5E0U9|DBP8_LODEL ATP-dependent RNA helicase DBP8 OS=Lodderomy...  109     4e-24 
sp|Q9H0S4|DDX47_HUMAN Probable ATP-dependent RNA helicase DDX47 O...  109     4e-24 
sp|A3GH91|DBP5_PICST ATP-dependent RNA helicase DBP5 OS=Scheffers...  110     4e-24 
sp|Q9BUJ2|HNRL1_HUMAN Heterogeneous nuclear ribonucleoprotein U-l...  112     5e-24 
sp|Q6P9R1|DDX51_MOUSE ATP-dependent RNA helicase DDX51 OS=Mus mus...  111     5e-24 
sp|Q8SQM5|IF4A_ENCCU ATP-dependent RNA helicase eIF4A OS=Encephal...  108     5e-24 
sp|Q18212|DX39B_CAEEL Spliceosome RNA helicase DDX39B homolog OS=...  108     6e-24 
sp|A7TJM9|DRS1_VANPO ATP-dependent RNA helicase DRS1 OS=Vanderwal...  111     6e-24 
sp|Q8L4E9|RH36_ORYSJ DEAD-box ATP-dependent RNA helicase 36 OS=Or...  109     7e-24 
sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 OS=Caenorha...  111     7e-24 
sp|Q5AJD0|DBP5_CANAL ATP-dependent RNA helicase DBP5 OS=Candida a...  109     8e-24 
sp|O13792|SUB2_SCHPO ATP-dependent RNA helicase uap56 OS=Schizosa...  108     8e-24 
sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 OS=Caenorha...  111     8e-24 
sp|A6QRQ7|RRP3_AJECN ATP-dependent rRNA helicase RRP3 OS=Ajellomy...  108     9e-24 
sp|Q0UN57|PRP5_PHANO Pre-mRNA-processing ATP-dependent RNA helica...  111     1e-23 
sp|Q1E1N5|RRP3_COCIM ATP-dependent rRNA helicase RRP3 OS=Coccidio...  108     1e-23 
sp|Q7L014|DDX46_HUMAN Probable ATP-dependent RNA helicase DDX46 O...  110     1e-23 
sp|A7TJK8|PRP5_VANPO Pre-mRNA-processing ATP-dependent RNA helica...  110     1e-23 
sp|Q62780|DDX46_RAT Probable ATP-dependent RNA helicase DDX46 OS=...  110     1e-23 
sp|A6SFV4|DBP8_BOTFB ATP-dependent RNA helicase dbp8 OS=Botryotin...  109     1e-23 
sp|Q0UK12|RRP3_PHANO ATP-dependent rRNA helicase RRP3 OS=Phaeosph...  109     1e-23 
sp|A3AVH5|RH13_ORYSJ DEAD-box ATP-dependent RNA helicase 13 OS=Or...  110     1e-23 
sp|A2XVF7|RH13_ORYSI DEAD-box ATP-dependent RNA helicase 13 OS=Or...  110     1e-23 
sp|Q569Z5|DDX46_MOUSE Probable ATP-dependent RNA helicase DDX46 O...  110     1e-23 
sp|A5DBI5|DBP5_PICGU ATP-dependent RNA helicase DBP5 OS=Meyerozym...  108     1e-23 
sp|Q75C39|DBP5_EREGS ATP-dependent RNA helicase DBP5 OS=Eremothec...  108     1e-23 
sp|Q9QY16|DDX25_RAT ATP-dependent RNA helicase DDX25 OS=Rattus no...  108     1e-23 
sp|A7TTT5|DBP2_VANPO ATP-dependent RNA helicase DBP2 OS=Vanderwal...  107     1e-23 
sp|Q6C3X7|DBP5_YARLI ATP-dependent RNA helicase DBP5 OS=Yarrowia ...  108     1e-23 
sp|P32892|DRS1_YEAST ATP-dependent RNA helicase DRS1 OS=Saccharom...  110     2e-23 
sp|A7A0P8|DRS1_YEAS7 ATP-dependent RNA helicase DRS1 OS=Saccharom...  110     2e-23 
sp|A6RW56|RRP3_BOTFB ATP-dependent rRNA helicase rrp3 OS=Botryoti...  108     2e-23 
sp|Q29S22|DDX47_BOVIN Probable ATP-dependent RNA helicase DDX47 O...  107     2e-23 
sp|Q8SQK9|DHH1_ENCCU ATP-dependent RNA helicase DHH1 OS=Encephali...  108     2e-23 
sp|Q8W4E1|RH47_ARATH DEAD-box ATP-dependent RNA helicase 47, mito...  108     2e-23 
sp|Q5R6D8|DDX46_PONAB Probable ATP-dependent RNA helicase DDX46 O...  109     2e-23 
sp|Q6CM95|SUB2_KLULA ATP-dependent RNA helicase SUB2 OS=Kluyverom...  107     3e-23 
sp|Q10PV9|RH47B_ORYSJ DEAD-box ATP-dependent RNA helicase 47B OS=...  108     3e-23 
sp|Q93Y39|RH13_ARATH DEAD-box ATP-dependent RNA helicase 13 OS=Ar...  109     3e-23 
sp|Q6C799|DBP8_YARLI ATP-dependent RNA helicase DBP8 OS=Yarrowia ...  107     3e-23 
sp|Q2U8K6|DBP5_ASPOR ATP-dependent RNA helicase dbp5 OS=Aspergill...  107     3e-23 
sp|Q0CI35|MAK5_ASPTN ATP-dependent RNA helicase mak5 OS=Aspergill...  108     4e-23 
sp|Q09903|DRS1_SCHPO ATP-dependent RNA helicase drs1 OS=Schizosac...  108     4e-23 
sp|A7EY76|DBP5_SCLS1 ATP-dependent RNA helicase dbp5 OS=Sclerotin...  107     4e-23 
sp|Q6CJV1|DRS1_KLULA ATP-dependent RNA helicase DRS1 OS=Kluyverom...  108     4e-23 
sp|Q756G5|DBP8_EREGS ATP-dependent RNA helicase DBP8 OS=Eremothec...  106     4e-23 
sp|Q8SR63|RRP3_ENCCU ATP-dependent rRNA helicase RRP3 OS=Encephal...  105     4e-23 
sp|A4REU9|MAK5_PYRO7 ATP-dependent RNA helicase MAK5 OS=Pyricular...  108     5e-23 
sp|Q9UHL0|DDX25_HUMAN ATP-dependent RNA helicase DDX25 OS=Homo sa...  107     5e-23 
sp|Q6BME5|SUB2_DEBHA ATP-dependent RNA helicase SUB2 OS=Debaryomy...  106     5e-23 
sp|Q86IZ9|DDX52_DICDI Probable ATP-dependent RNA helicase ddx52 O...  108     5e-23 
sp|A4RGU2|DBP4_PYRO7 ATP-dependent RNA helicase DBP4 OS=Pyricular...  108     5e-23 
sp|Q9SA27|RH36_ARATH DEAD-box ATP-dependent RNA helicase 36 OS=Ar...  106     6e-23 
sp|A7EIX7|SUB2_SCLS1 ATP-dependent RNA helicase sub2 OS=Sclerotin...  105     6e-23 
sp|Q4WMS3|MAK5_ASPFU ATP-dependent RNA helicase mak5 OS=Aspergill...  108     6e-23 
sp|Q0CDT1|DBP5_ASPTN ATP-dependent RNA helicase dbp5 OS=Aspergill...  106     7e-23 
sp|P21372|PRP5_YEAST Pre-mRNA-processing ATP-dependent RNA helica...  108     7e-23 
sp|Q2TBP1|DDX25_BOVIN ATP-dependent RNA helicase DDX25 OS=Bos tau...  106     8e-23 
sp|Q0DVX2|RH50_ORYSJ DEAD-box ATP-dependent RNA helicase 50 OS=Or...  107     8e-23 
sp|A6ZLH6|PRP5_YEAS7 Pre-mRNA-processing ATP-dependent RNA helica...  107     8e-23 
sp|A3LP87|DBP8_PICST ATP-dependent RNA helicase DBP8 OS=Scheffers...  105     8e-23 
sp|A4RGD1|RRP3_PYRO7 ATP-dependent rRNA helicase RRP3 OS=Pyricula...  106     1e-22 
sp|A5DZT7|DBP10_LODEL ATP-dependent RNA helicase DBP10 OS=Loddero...  107     1e-22 
sp|Q9VIF6|DDX47_DROME ATP-dependent RNA helicase DDX47 OS=Drosoph...  106     1e-22 
sp|Q4I662|DBP8_GIBZE ATP-dependent RNA helicase DBP8 OS=Gibberell...  106     1e-22 
sp|Q0TXZ2|SUB2_PHANO ATP-dependent RNA helicase SUB2 OS=Phaeospha...  105     1e-22 
sp|Q81E85|CSHC_BACCR DEAD-box ATP-dependent RNA helicase CshC OS=...  104     1e-22 
sp|Q6CDS6|ROK1_YARLI ATP-dependent RNA helicase ROK1 OS=Yarrowia ...  105     1e-22 
sp|Q9QY15|DDX25_MOUSE ATP-dependent RNA helicase DDX25 OS=Mus mus...  105     1e-22 
sp|Q6H874|RH47A_ORYSJ DEAD-box ATP-dependent RNA helicase 47A OS=...  106     2e-22 
sp|A1CFV3|DBP5_ASPCL ATP-dependent RNA helicase dbp5 OS=Aspergill...  105     2e-22 
sp|Q5ZHZ0|DX39B_CHICK Spliceosome RNA helicase DDX39B OS=Gallus g...  104     2e-22 
sp|A2QWW0|MAK5_ASPNC ATP-dependent RNA helicase mak5 OS=Aspergill...  106     2e-22 
sp|Q4PEX7|DBP8_USTMA ATP-dependent RNA helicase DBP8 OS=Ustilago ...  105     2e-22 
sp|Q54VT4|DDX47_DICDI Probable ATP-dependent RNA helicase ddx47 O...  105     2e-22 
sp|A5DDN0|SUB2_PICGU ATP-dependent RNA helicase SUB2 OS=Meyerozym...  103     2e-22 
sp|Q4P7Z8|DBP5_USTMA ATP-dependent RNA helicase DBP5 OS=Ustilago ...  104     3e-22 
sp|P0CQ96|SUB2_CRYNJ ATP-dependent RNA helicase SUB2 OS=Cryptococ...  103     3e-22 
sp|P0CQ97|SUB2_CRYNB ATP-dependent RNA helicase SUB2 OS=Cryptococ...  103     3e-22 
sp|Q754U8|PRP5_EREGS Pre-mRNA-processing ATP-dependent RNA helica...  106     3e-22 
sp|Q9FZ92|RH44_ARATH Putative DEAD-box ATP-dependent RNA helicase...  105     3e-22 
sp|Q5B5E7|RRP3_EMENI ATP-dependent rRNA helicase rrp3 OS=Emericel...  104     3e-22 
sp|Q6FML5|PRP5_CANGA Pre-mRNA-processing ATP-dependent RNA helica...  105     3e-22 
sp|A5DKW3|DRS1_PICGU ATP-dependent RNA helicase DRS1 OS=Meyerozym...  105     3e-22 
sp|O60173|DBP7_SCHPO ATP-dependent RNA helicase dbp7 OS=Schizosac...  105     4e-22 
sp|Q8VDW0|DX39A_MOUSE ATP-dependent RNA helicase DDX39A OS=Mus mu...  103     4e-22 
sp|A7TK63|DBP8_VANPO ATP-dependent RNA helicase DBP8 OS=Vanderwal...  103     4e-22 
sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 OS=Caenorha...  105     5e-22 
sp|Q3T147|DX39B_BOVIN Spliceosome RNA helicase DDX39B OS=Bos taur...  103     5e-22 
sp|Q0J7Y8|RH45_ORYSJ DEAD-box ATP-dependent RNA helicase 45 OS=Or...  105     5e-22 
sp|A5E3W5|SUB2_LODEL ATP-dependent RNA helicase SUB2 OS=Lodderomy...  103     5e-22 
sp|Q63413|DX39B_RAT Spliceosome RNA helicase Ddx39b OS=Rattus nor...  103     5e-22 
sp|Q9Z1N5|DX39B_MOUSE Spliceosome RNA helicase Ddx39b OS=Mus musc...  103     5e-22 
sp|A3LSN3|DRS1_PICST ATP-dependent RNA helicase DRS1 OS=Scheffers...  105     5e-22 
sp|Q9GZR7|DDX24_HUMAN ATP-dependent RNA helicase DDX24 OS=Homo sa...  105     5e-22 
sp|A2QUY7|DBP5_ASPNC ATP-dependent RNA helicase dbp5 OS=Aspergill...  103     6e-22 
sp|Q5U216|DX39A_RAT ATP-dependent RNA helicase DDX39A OS=Rattus n...  102     6e-22 
sp|Q5RE47|DX39B_PONAB Spliceosome RNA helicase DDX39B OS=Pongo ab...  102     6e-22 
sp|Q29024|DX39B_PIG Spliceosome RNA helicase DDX39B OS=Sus scrofa...  102     6e-22 
sp|P60024|DX39B_PANTR Spliceosome RNA helicase DDX39B OS=Pan trog...  102     6e-22 
sp|Q5TM17|DX39B_MACMU Spliceosome RNA helicase DDX39B OS=Macaca m...  102     6e-22 
sp|Q13838|DX39B_HUMAN Spliceosome RNA helicase DDX39B OS=Homo sap...  102     6e-22 
sp|Q5WR10|DX39B_CANLF Spliceosome RNA helicase DDX39B OS=Canis lu...  102     6e-22 
sp|A3LST5|SUB2_PICST ATP-dependent RNA helicase SUB2 OS=Scheffers...  102     6e-22 
sp|Q5AVM1|DBP5_EMENI ATP-dependent RNA helicase dbp5 OS=Emericell...  103     6e-22 
sp|Q5RDL2|DDX24_PONAB ATP-dependent RNA helicase DDX24 OS=Pongo a...  105     6e-22 
sp|Q27268|DX39B_DROME ATP-dependent RNA helicase WM6 OS=Drosophil...  102     8e-22 
sp|A1DMT9|MAK5_NEOFI ATP-dependent RNA helicase mak5 OS=Neosartor...  104     9e-22 
sp|Q40466|IF413_TOBAC Eukaryotic initiation factor 4A-13 (Fragmen...  100     1e-21 
sp|A6ZXP4|SUB2_YEAS7 ATP-dependent RNA helicase SUB2 OS=Saccharom...  102     1e-21 
sp|Q9H8H2|DDX31_HUMAN Probable ATP-dependent RNA helicase DDX31 O...  104     1e-21 
sp|Q07478|SUB2_YEAST ATP-dependent RNA helicase SUB2 OS=Saccharom...  102     1e-21 
sp|O00148|DX39A_HUMAN ATP-dependent RNA helicase DDX39A OS=Homo s...  102     1e-21 
sp|Q5A9Z6|FAL1_CANAL ATP-dependent RNA helicase FAL1 OS=Candida a...  101     1e-21 
sp|Q6FL17|SUB2_CANGA ATP-dependent RNA helicase SUB2 OS=Candida g...  102     1e-21 
sp|Q84T03|RH27_ORYSJ DEAD-box ATP-dependent RNA helicase 27 OS=Or...  103     1e-21 
sp|Q6CKI1|PRP5_KLULA Pre-mRNA-processing ATP-dependent RNA helica...  103     2e-21 
sp|O01836|GLH3_CAEEL ATP-dependent RNA helicase glh-3 OS=Caenorha...  103     2e-21 
sp|A7TEG8|MAK5_VANPO ATP-dependent RNA helicase MAK5 OS=Vanderwal...  103     2e-21 
sp|Q6DRI7|DDX51_DANRE ATP-dependent RNA helicase DDX51 OS=Danio r...  103     2e-21 
sp|Q6FQZ0|DBP8_CANGA ATP-dependent RNA helicase DBP8 OS=Candida g...  101     2e-21 
sp|Q6BTL5|DRS1_DEBHA ATP-dependent RNA helicase DRS1 OS=Debaryomy...  103     2e-21 
sp|Q4P5U4|DBP4_USTMA ATP-dependent RNA helicase DBP4 OS=Ustilago ...  103     3e-21 
sp|Q54ZI9|DDX20_DICDI Probable ATP-dependent RNA helicase ddx20 O...  102     3e-21 
sp|Q6BPT8|DBP6_DEBHA ATP-dependent RNA helicase DBP6 OS=Debaryomy...  101     4e-21 
sp|Q0UCB9|DBP5_PHANO ATP-dependent RNA helicase DBP5 OS=Phaeospha...  100     4e-21 
sp|Q5ZLN8|DDX55_CHICK ATP-dependent RNA helicase DDX55 OS=Gallus ...  101     4e-21 
sp|P38719|DBP8_YEAST ATP-dependent RNA helicase DBP8 OS=Saccharom...  100     4e-21 
sp|A6ZT77|DBP8_YEAS7 ATP-dependent RNA helicase DBP8 OS=Saccharom...  100     4e-21 
sp|Q5BCI0|MAK5_EMENI ATP-dependent RNA helicase mak5 OS=Emericell...  102     5e-21 
sp|A5DLE0|DBP8_PICGU ATP-dependent RNA helicase DBP8 OS=Meyerozym...  100     5e-21 
sp|A7TJT7|SUB22_VANPO ATP-dependent RNA helicase SUB2-2 OS=Vander...  100     5e-21 
sp|Q84TG1|RH57_ARATH DEAD-box ATP-dependent RNA helicase 57 OS=Ar...  101     5e-21 
sp|Q54TF8|DDX19_DICDI ATP-dependent RNA helicase ddx19 OS=Dictyos...  100     5e-21 
sp|Q6CSZ7|DHH1_KLULA ATP-dependent RNA helicase DHH1 OS=Kluyverom...  100     6e-21 
sp|A2QS00|DBP4_ASPNC ATP-dependent RNA helicase dbp4 OS=Aspergill...  101     7e-21 
sp|Q1EB31|DBP4_COCIM ATP-dependent RNA helicase DBP4 OS=Coccidioi...  101     8e-21 
sp|Q00PI9|HNRL2_MOUSE Heterogeneous nuclear ribonucleoprotein U-l...  101     8e-21 
sp|Q0UMB9|DBP4_PHANO ATP-dependent RNA helicase DBP4 OS=Phaeospha...  101     9e-21 
sp|Q2UHB7|DBP4_ASPOR ATP-dependent RNA helicase dbp4 OS=Aspergill...  101     9e-21 
sp|Q09747|DBP5_SCHPO ATP-dependent RNA helicase dbp5 OS=Schizosac...  100     9e-21 
sp|Q0DBS1|RH51_ORYSJ Putative DEAD-box ATP-dependent RNA helicase...  100     1e-20 
sp|Q55BR9|DDX49_DICDI Probable ATP-dependent RNA helicase ddx49 O...  99.8    1e-20 
sp|Q7RYZ7|DBP8_NEUCR ATP-dependent RNA helicase dbp-8 OS=Neurospo...  100     1e-20 
sp|Q07886|DDX49_DROME Probable ATP-dependent RNA helicase Dbp45A ...  99.8    1e-20 
sp|Q9ESV0|DDX24_MOUSE ATP-dependent RNA helicase DDX24 OS=Mus mus...  100     1e-20 
sp|Q6AZV7|DDX55_XENLA ATP-dependent RNA helicase DDX55 OS=Xenopus...  100     2e-20 
sp|A7TLA0|SUB21_VANPO ATP-dependent RNA helicase SUB2-1 OS=Vander...  98.6    2e-20 
sp|Q6CQA1|MS116_KLULA ATP-dependent RNA helicase MSS116, mitochon...  100     2e-20 
sp|Q7RZ35|DBP4_NEUCR ATP-dependent RNA helicase dbp-4 OS=Neurospo...  100     2e-20 
sp|P90897|RDE12_CAEEL DEAD-box ATP-dependent RNA helicase rde-12 ...  100     2e-20 
sp|Q3EBD3|RH41_ARATH DEAD-box ATP-dependent RNA helicase 41 OS=Ar...  99.0    2e-20 
sp|Q5BFU1|DBP4_EMENI ATP-dependent RNA helicase dbp4 OS=Emericell...  100     2e-20 
sp|Q9UHI6|DDX20_HUMAN Probable ATP-dependent RNA helicase DDX20 O...  100     2e-20 
sp|Q1KMD3|HNRL2_HUMAN Heterogeneous nuclear ribonucleoprotein U-l...  99.8    2e-20 
sp|Q59MW2|DBP6_CANAL ATP-dependent RNA helicase DBP6 OS=Candida a...  99.4    3e-20 
sp|Q9SB89|RH27_ARATH DEAD-box ATP-dependent RNA helicase 27 OS=Ar...  99.0    3e-20 
sp|Q09775|ROK1_SCHPO ATP-dependent RNA helicase rok1 OS=Schizosac...  98.2    3e-20 
sp|A1DNF9|DBP4_NEOFI ATP-dependent RNA helicase dbp4 OS=Neosartor...  99.0    5e-20 
sp|Q13206|DDX10_HUMAN Probable ATP-dependent RNA helicase DDX10 O...  99.0    5e-20 
sp|Q4WM60|DBP4_ASPFU ATP-dependent RNA helicase dbp4 OS=Aspergill...  98.6    6e-20 
sp|Q86B47|Y8611_DROME Probable ATP-dependent RNA helicase CG8611 ...  98.6    7e-20 
sp|Q76PD3|DBP6_SCHPO ATP-dependent RNA helicase dbp6 OS=Schizosac...  97.8    8e-20 
sp|Q1E9T9|DBP7_COCIM ATP-dependent RNA helicase DBP7 OS=Coccidioi...  98.2    8e-20 
sp|P0CR06|DBP10_CRYNJ ATP-dependent RNA helicase DBP10 OS=Cryptoc...  98.2    9e-20 
sp|P0CR07|DBP10_CRYNB ATP-dependent RNA helicase DBP10 OS=Cryptoc...  98.2    9e-20 
sp|Q0CMM5|DBP4_ASPTN ATP-dependent RNA helicase dbp4 OS=Aspergill...  98.2    9e-20 
sp|Q5ZJF6|DDX10_CHICK Probable ATP-dependent RNA helicase DDX10 O...  98.2    9e-20 
sp|Q9JJY4|DDX20_MOUSE Probable ATP-dependent RNA helicase DDX20 O...  98.2    1e-19 
sp|Q6BSM3|SPB4_DEBHA ATP-dependent rRNA helicase SPB4 OS=Debaryom...  97.4    1e-19 
sp|A3LWH3|DBP7_PICST ATP-dependent RNA helicase DBP7 OS=Scheffers...  97.8    1e-19 
sp|A5E3K3|DBP4_LODEL ATP-dependent RNA helicase DBP4 OS=Lodderomy...  97.8    1e-19 
sp|P0C218|DDX20_DANRE Probable ATP-dependent RNA helicase DDX20 O...  97.4    1e-19 
sp|Q5APM7|MS116_CANAL ATP-dependent RNA helicase MSS116, mitochon...  97.4    1e-19 
sp|Q54S03|DDX18_DICDI Probable ATP-dependent RNA helicase ddx18 O...  97.1    1e-19 
sp|A7TFZ9|DBP6_VANPO ATP-dependent RNA helicase DBP6 OS=Vanderwal...  96.7    2e-19 
sp|A5DGM4|SPB4_PICGU ATP-dependent rRNA helicase SPB4 OS=Meyerozy...  96.7    2e-19 
sp|Q2UUN6|HAS1_ASPOR ATP-dependent RNA helicase has1 OS=Aspergill...  96.3    2e-19 
sp|Q761Z9|RH18_ORYSJ DEAD-box ATP-dependent RNA helicase 18 OS=Or...  96.7    2e-19 
sp|Q6FY67|MAK5_CANGA ATP-dependent RNA helicase MAK5 OS=Candida g...  96.7    2e-19 
sp|A7F8V8|DBP7_SCLS1 ATP-dependent RNA helicase dbp7 OS=Sclerotin...  97.1    2e-19 
sp|Q80Y44|DDX10_MOUSE Probable ATP-dependent RNA helicase DDX10 O...  96.7    3e-19 
sp|Q6CXW0|DBP8_KLULA ATP-dependent RNA helicase DBP8 OS=Kluyverom...  94.7    3e-19 
sp|Q9VVK8|DDX52_DROME Probable ATP-dependent RNA helicase DDX52 O...  95.9    3e-19 
sp|Q0D622|RH32_ORYSJ DEAD-box ATP-dependent RNA helicase 32 OS=Or...  96.3    3e-19 
sp|A3LSJ2|DBP6_PICST ATP-dependent RNA helicase DBP6 OS=Scheffers...  95.5    4e-19 
sp|Q93ZG7|RH38_ARATH DEAD-box ATP-dependent RNA helicase 38 OS=Ar...  94.7    5e-19 
sp|A3LX02|SPB4_PICST ATP-dependent rRNA helicase SPB4 OS=Scheffer...  95.1    6e-19 
sp|A5D7C1|DDX52_BOVIN Probable ATP-dependent RNA helicase DDX52 O...  94.7    6e-19 
sp|Q6FU81|MS116_CANGA ATP-dependent RNA helicase MSS116, mitochon...  95.1    7e-19 
sp|Q8JHJ2|DDX55_DANRE ATP-dependent RNA helicase DDX55 OS=Danio r...  94.7    7e-19 
sp|O61305|DDX19_DROME DEAD-box helicase Dbp80 OS=Drosophila melan...  93.6    8e-19 
sp|A5DTK7|MS116_LODEL ATP-dependent RNA helicase MSS116, mitochon...  94.7    1e-18 
sp|Q9Y2R4|DDX52_HUMAN Probable ATP-dependent RNA helicase DDX52 O...  94.4    1e-18 
sp|A7TJ71|DBP4_VANPO ATP-dependent RNA helicase DBP4 OS=Vanderwal...  94.7    1e-18 
sp|Q9VHU1|DDX55_DROME Probable ATP-dependent RNA helicase DDX55 h...  94.0    1e-18 
sp|A5DLF4|DBP4_PICGU ATP-dependent RNA helicase DBP4 OS=Meyerozym...  94.4    1e-18 
sp|Q9CWT6|DDX28_MOUSE Probable ATP-dependent RNA helicase DDX28 O...  93.6    1e-18 
sp|Q6CDN5|DBP6_YARLI ATP-dependent RNA helicase DBP6 OS=Yarrowia ...  93.6    1e-18 
sp|P75172|Y623_MYCPN Probable ATP-dependent RNA helicase MG425 ho...  92.4    2e-18 
sp|A5DID7|HAS1_PICGU ATP-dependent RNA helicase HAS1 OS=Meyerozym...  93.2    2e-18 
sp|Q6BZR4|DBP9_YARLI ATP-dependent RNA helicase DBP9 OS=Yarrowia ...  93.2    2e-18 
sp|A4R8B5|HAS1_PYRO7 ATP-dependent RNA helicase HAS1 OS=Pyricular...  93.2    2e-18 
sp|Q0C9E8|MRH4_ASPTN ATP-dependent RNA helicase mrh4, mitochondri...  93.6    2e-18 
sp|Q54Q94|DDX10_DICDI Probable ATP-dependent RNA helicase ddx10 O...  94.0    2e-18 
sp|Q2H2J1|DBP4_CHAGB ATP-dependent RNA helicase DBP4 OS=Chaetomiu...  93.6    2e-18 
sp|Q2NL08|DDX55_BOVIN ATP-dependent RNA helicase DDX55 OS=Bos tau...  92.8    3e-18 
sp|A7EAY2|MAK5_SCLS1 ATP-dependent RNA helicase mak5 OS=Sclerotin...  93.6    3e-18 
sp|Q4WRP2|MS116_ASPFU ATP-dependent RNA helicase mss116, mitochon...  93.2    3e-18 
sp|Q59S50|DBP7_CANAL ATP-dependent RNA helicase DBP7 OS=Candida a...  93.2    3e-18 
sp|A1CTZ2|DBP4_ASPCL ATP-dependent RNA helicase dbp4 OS=Aspergill...  93.2    3e-18 
sp|Q59N29|SPB4_CANAL ATP-dependent rRNA helicase SPB4 OS=Candida ...  92.8    3e-18 
sp|Q99PT0|DDX52_RAT Probable ATP-dependent RNA helicase DDX52 OS=...  92.8    3e-18 
sp|A3GGE9|DBP4_PICST ATP-dependent RNA helicase DBP4 OS=Scheffers...  93.2    3e-18 
sp|Q4HZ68|DBP7_GIBZE ATP-dependent RNA helicase DBP7 OS=Gibberell...  92.8    4e-18 
sp|Q6C835|DBP7_YARLI ATP-dependent RNA helicase DBP7 OS=Yarrowia ...  92.8    4e-18 
sp|Q5ZBH5|RH25_ORYSJ DEAD-box ATP-dependent RNA helicase 25 OS=Or...  92.4    4e-18 
sp|Q6FPT7|DBP4_CANGA ATP-dependent RNA helicase DBP4 OS=Candida g...  92.8    4e-18 
sp|Q7S2N9|HAS1_NEUCR ATP-dependent RNA helicase has-1 OS=Neurospo...  92.0    5e-18 
sp|Q6FIL3|HAS1_CANGA ATP-dependent RNA helicase HAS1 OS=Candida g...  91.3    5e-18 
sp|Q6CXB7|HAS1_KLULA ATP-dependent RNA helicase HAS1 OS=Kluyverom...  91.3    6e-18 
sp|A6ZPU3|DBP4_YEAS7 ATP-dependent RNA helicase DBP4 OS=Saccharom...  92.4    6e-18 
sp|Q74Z73|HAS1_EREGS ATP-dependent RNA helicase HAS1 OS=Eremothec...  91.3    6e-18 
sp|A5E2I8|SPB4_LODEL ATP-dependent rRNA helicase SPB4 OS=Lodderom...  91.7    6e-18 
sp|P20448|DBP4_YEAST ATP-dependent RNA helicase HCA4 OS=Saccharom...  92.0    6e-18 
sp|Q6CKZ4|DBP6_KLULA ATP-dependent RNA helicase DBP6 OS=Kluyverom...  91.7    7e-18 
sp|Q9UTP9|DBP4_SCHPO ATP-dependent RNA helicase dbp4 OS=Schizosac...  91.7    8e-18 
sp|Q2GV49|SPB4_CHAGB ATP-dependent rRNA helicase SPB4 OS=Chaetomi...  91.3    9e-18 
sp|Q9DGP9|DDX25_XENLA ATP-dependent RNA helicase DDX25 OS=Xenopus...  90.5    1e-17 
sp|Q4IAS1|DBP4_GIBZE ATP-dependent RNA helicase DBP4 OS=Gibberell...  91.3    1e-17 
sp|Q75C76|DBP4_EREGS ATP-dependent RNA helicase DBP4 OS=Eremothec...  91.3    1e-17 
sp|Q0JL73|RH26_ORYSJ DEAD-box ATP-dependent RNA helicase 26 OS=Or...  90.5    1e-17 
sp|A7TJS7|SPB4_VANPO ATP-dependent rRNA helicase SPB4 OS=Vanderwa...  90.9    1e-17 
sp|Q8NHQ9|DDX55_HUMAN ATP-dependent RNA helicase DDX55 OS=Homo sa...  90.5    1e-17 
sp|Q4WV71|DBP7_ASPFU ATP-dependent RNA helicase dbp7 OS=Aspergill...  90.9    2e-17 
sp|Q757I6|MAK5_EREGS ATP-dependent RNA helicase MAK5 OS=Eremothec...  90.9    2e-17 
sp|P25808|SPB4_YEAST ATP-dependent rRNA helicase SPB4 OS=Saccharo...  90.5    2e-17 
sp|A7A237|SPB4_YEAS7 ATP-dependent rRNA helicase SPB4 OS=Saccharo...  90.5    2e-17 
sp|P15424|MS116_YEAST ATP-dependent RNA helicase MSS116, mitochon...  90.5    2e-17 
sp|Q6FKS8|SPB4_CANGA ATP-dependent rRNA helicase SPB4 OS=Candida ...  90.1    2e-17 
sp|Q5AF95|DBP4_CANAL ATP-dependent RNA helicase DBP4 OS=Candida a...  90.5    2e-17 
sp|Q750F8|SPB4_EREGS ATP-dependent rRNA helicase SPB4 OS=Eremothe...  90.1    2e-17 
sp|Q8K301|DDX52_MOUSE Probable ATP-dependent RNA helicase DDX52 O...  89.7    2e-17 
sp|Q0UG00|MS116_PHANO ATP-dependent RNA helicase MSS116, mitochon...  89.4    3e-17 
sp|Q2GZU7|DBP7_CHAGB ATP-dependent RNA helicase DBP7 OS=Chaetomiu...  90.1    3e-17 
sp|Q8SR01|DBP4_ENCCU ATP-dependent RNA helicase DBP4 OS=Encephali...  88.6    3e-17 
sp|Q03532|HAS1_YEAST ATP-dependent RNA helicase HAS1 OS=Saccharom...  89.0    3e-17 
sp|Q6BP45|ROK1_DEBHA ATP-dependent RNA helicase ROK1 OS=Debaryomy...  89.4    3e-17 
sp|Q6CK32|DBP7_KLULA ATP-dependent RNA helicase DBP7 OS=Kluyverom...  89.7    3e-17 
sp|Q3SZ40|DDX56_BOVIN Probable ATP-dependent RNA helicase DDX56 O...  89.0    4e-17 
sp|A5E2Z9|HAS1_LODEL ATP-dependent RNA helicase HAS1 OS=Lodderomy...  89.0    4e-17 
sp|Q8SR49|SPB4_ENCCU ATP-dependent rRNA helicase SPB4 OS=Encephal...  88.2    4e-17 
sp|A3LT90|MRH4_PICST ATP-dependent RNA helicase MRH4, mitochondri...  89.0    5e-17 
sp|A2Q9T6|HAS1_ASPNC ATP-dependent RNA helicase has1 OS=Aspergill...  88.6    6e-17 
sp|Q7S873|DBP7_NEUCR ATP-dependent RNA helicase dbp-7 OS=Neurospo...  89.0    6e-17 
sp|Q9NUL7|DDX28_HUMAN Probable ATP-dependent RNA helicase DDX28 O...  88.2    6e-17 
sp|Q9Y7C4|ROK1_CANAL ATP-dependent RNA helicase CHR1 OS=Candida a...  88.2    7e-17 
sp|Q6K7R9|RH48_ORYSJ DEAD-box ATP-dependent RNA helicase 48 OS=Or...  89.0    7e-17 
sp|Q6BXG0|DBP4_DEBHA ATP-dependent RNA helicase DBP4 OS=Debaryomy...  88.6    8e-17 
sp|Q9FNM7|RH26_ARATH DEAD-box ATP-dependent RNA helicase 26 OS=Ar...  88.6    8e-17 
sp|Q6ZPL9|DDX55_MOUSE ATP-dependent RNA helicase DDX55 OS=Mus mus...  88.2    9e-17 
sp|Q9FFQ1|RH31_ARATH DEAD-box ATP-dependent RNA helicase 31 OS=Ar...  88.2    1e-16 
sp|A1DE84|DBP7_NEOFI ATP-dependent RNA helicase dbp7 OS=Neosartor...  88.2    1e-16 
sp|Q6CRF4|DBP4_KLULA ATP-dependent RNA helicase DBP4 OS=Kluyverom...  88.2    1e-16 
sp|Q2GMX1|HAS1_CHAGB ATP-dependent RNA helicase HAS1 OS=Chaetomiu...  87.8    1e-16 
sp|Q0UR48|HAS1_PHANO ATP-dependent RNA helicase HAS1 OS=Phaeospha...  87.4    1e-16 
sp|Q9FFT9|RH32_ARATH DEAD-box ATP-dependent RNA helicase 32 OS=Ar...  87.8    2e-16 
sp|A5DIP0|DHH1_PICGU ATP-dependent RNA helicase DHH1 OS=Meyerozym...  87.0    2e-16 
sp|Q0DBU5|RH31_ORYSJ DEAD-box ATP-dependent RNA helicase 31 OS=Or...  87.0    2e-16 
sp|Q6FN65|ROK1_CANGA ATP-dependent RNA helicase ROK1 OS=Candida g...  87.0    2e-16 
sp|Q1K8F7|CYT19_NEUCR ATP-dependent RNA helicase cyt-19, mitochon...  87.0    2e-16 
sp|Q2UST1|MS116_ASPOR ATP-dependent RNA helicase mss116, mitochon...  87.0    2e-16 
sp|Q6BJX6|DHH1_DEBHA ATP-dependent RNA helicase DHH1 OS=Debaryomy...  86.7    2e-16 
sp|P34668|YO12_CAEEL Putative ATP-dependent RNA helicase ZK686.2 ...  86.7    2e-16 
sp|Q0UMB6|DBP10_PHANO ATP-dependent RNA helicase DBP10 OS=Phaeosp...  87.0    2e-16 
sp|A5E726|DBP6_LODEL ATP-dependent RNA helicase DBP6 OS=Lodderomy...  86.7    3e-16 
sp|Q7FGZ2|RH1_ARATH DEAD-box ATP-dependent RNA helicase 1 OS=Arab...  86.3    3e-16 
sp|A3LNR6|HAS1_PICST ATP-dependent RNA helicase HAS1 OS=Scheffers...  86.3    3e-16 
sp|Q4R4T6|DDX28_MACFA Probable ATP-dependent RNA helicase DDX28 O...  85.9    4e-16 
sp|Q9NY93|DDX56_HUMAN Probable ATP-dependent RNA helicase DDX56 O...  85.9    4e-16 
sp|Q6CGD1|DBP4_YARLI ATP-dependent RNA helicase DBP4 OS=Yarrowia ...  86.3    5e-16 
sp|A3GHW9|ROK1_PICST ATP-dependent RNA helicase ROK1 OS=Scheffers...  85.5    5e-16 
sp|Q6IMY8|HNRPU_RAT Heterogeneous nuclear ribonucleoprotein U OS=...  85.5    7e-16 
sp|Q5XPI3|RN123_MOUSE E3 ubiquitin-protein ligase RNF123 OS=Mus m...  85.9    7e-16 
sp|Q5XPI4|RN123_HUMAN E3 ubiquitin-protein ligase RNF123 OS=Homo ...  85.9    7e-16 
sp|Q9D0R4|DDX56_MOUSE Probable ATP-dependent RNA helicase DDX56 O...  84.7    8e-16 
sp|Q8VEK3|HNRPU_MOUSE Heterogeneous nuclear ribonucleoprotein U O...  85.5    8e-16 
sp|Q0DLB9|RH17_ORYSJ DEAD-box ATP-dependent RNA helicase 17 OS=Or...  84.7    1e-15 
sp|A7ESL8|DBP4_SCLS1 ATP-dependent RNA helicase dbp4 OS=Sclerotin...  85.1    1e-15 
sp|A5DIX5|ROK1_PICGU ATP-dependent RNA helicase ROK1 OS=Meyerozym...  84.3    1e-15 
sp|A5DAR2|DBP7_PICGU ATP-dependent RNA helicase DBP7 OS=Meyerozym...  85.1    1e-15 
sp|Q00839|HNRPU_HUMAN Heterogeneous nuclear ribonucleoprotein U O...  84.7    1e-15 
sp|Q6C193|SPB4_YARLI ATP-dependent rRNA helicase SPB4 OS=Yarrowia...  84.3    1e-15 
sp|A0KEG9|RHLB_AERHH ATP-dependent RNA helicase RhlB OS=Aeromonas...  83.2    1e-15 
sp|Q54EC2|DDX55_DICDI Probable ATP-dependent RNA helicase ddx55 O...  84.0    2e-15 
sp|D3ZXK7|RN123_RAT E3 ubiquitin-protein ligase RNF123 OS=Rattus ...  84.3    2e-15 
sp|Q873H9|SPB4_NEUCR ATP-dependent rRNA helicase spb-4 OS=Neurosp...  83.6    2e-15 
sp|A4STJ7|RHLB_AERS4 ATP-dependent RNA helicase RhlB OS=Aeromonas...  82.0    3e-15 
sp|A1CIQ5|HAS1_ASPCL ATP-dependent RNA helicase has1 OS=Aspergill...  82.8    4e-15 
sp|Q5AZY1|MRH4_EMENI ATP-dependent RNA helicase mrh4, mitochondri...  82.8    4e-15 
sp|Q0CF43|DBP7_ASPTN ATP-dependent RNA helicase dbp7 OS=Aspergill...  83.2    4e-15 
sp|O74764|SPB4_SCHPO ATP-dependent rRNA helicase spb4 OS=Schizosa...  82.4    5e-15 
sp|Q94C75|RH25_ARATH DEAD-box ATP-dependent RNA helicase 25 OS=Ar...  82.4    5e-15 
sp|A0A5F9C6I2|RN123_RABIT E3 ubiquitin-protein ligase RNF123 OS=O...  83.2    6e-15 
sp|A1CB55|DBP7_ASPCL ATP-dependent RNA helicase dbp7 OS=Aspergill...  82.4    6e-15 
sp|Q5BBY1|HAS1_EMENI ATP-dependent RNA helicase has1 OS=Emericell...  82.4    6e-15 
sp|Q5AAW3|DHH1_CANAL ATP-dependent RNA helicase DHH1 OS=Candida a...  82.0    6e-15 
sp|A7TNT1|DBP7_VANPO ATP-dependent RNA helicase DBP7 OS=Vanderwal...  82.4    7e-15 
sp|Q9SW44|RH16_ARATH DEAD-box ATP-dependent RNA helicase 16 OS=Ar...  81.3    1e-14 
sp|Q6C3J3|MRH4_YARLI ATP-dependent RNA helicase MRH4, mitochondri...  80.5    2e-14 
sp|Q2TZH2|MRH4_ASPOR ATP-dependent RNA helicase mrh4, mitochondri...  80.9    2e-14 
sp|Q5UQD1|YR458_MIMIV Putative ATP-dependent RNA helicase R458 OS...  80.1    2e-14 
sp|Q9SF41|RH45_ARATH DEAD-box ATP-dependent RNA helicase 45 OS=Ar...  80.5    3e-14 
sp|P38112|MAK5_YEAST ATP-dependent RNA helicase MAK5 OS=Saccharom...  80.1    3e-14 
sp|Q6C0X2|DHH1_YARLI ATP-dependent RNA helicase DHH1 OS=Yarrowia ...  79.3    4e-14 
sp|Q6ATJ8|RH16_ORYSJ DEAD-box ATP-dependent RNA helicase 16 OS=Or...  79.7    4e-14 
sp|Q7XJN0|RH17_ARATH DEAD-box ATP-dependent RNA helicase 17 OS=Ar...  79.3    5e-14 
sp|A7TT88|ROK1_VANPO ATP-dependent RNA helicase ROK1 OS=Vanderwal...  79.0    6e-14 
sp|A6ZU15|ROK1_YEAS7 ATP-dependent RNA helicase ROK1 OS=Saccharom...  78.6    7e-14 
sp|P45818|ROK1_YEAST ATP-dependent RNA helicase ROK1 OS=Saccharom...  78.6    9e-14 
sp|A6ZL85|MAK5_YEAS7 ATP-dependent RNA helicase MAK5 OS=Saccharom...  79.0    9e-14 
sp|Q6CTN7|MAK5_KLULA ATP-dependent RNA helicase MAK5 OS=Kluyverom...  79.0    1e-13 
sp|Q10RI7|RH38_ORYSJ DEAD-box ATP-dependent RNA helicase 38 OS=Or...  77.4    1e-13 
sp|Q0E2Q3|IF4A2_ORYSJ Putative eukaryotic initiation factor 4A-2 ...  77.0    1e-13 
sp|Q7SBR1|MRH4_NEUCR ATP-dependent RNA helicase mrh4, mitochondri...  77.8    2e-13 
sp|Q66HG7|DDX59_RAT Probable ATP-dependent RNA helicase DDX59 OS=...  77.4    2e-13 
sp|Q9SIZ8|RKP_ARATH E3 ubiquitin-protein ligase RKP OS=Arabidopsi...  78.2    2e-13 
sp|Q9C8S9|RH48_ARATH Probable DEAD-box ATP-dependent RNA helicase...  77.4    3e-13 
sp|A1DGF2|MRH4_NEOFI ATP-dependent RNA helicase mrh4, mitochondri...  76.6    3e-13 
sp|Q6FST5|DBP6_CANGA ATP-dependent RNA helicase DBP6 OS=Candida g...  75.9    6e-13 
sp|A6R918|SPB4_AJECN ATP-dependent rRNA helicase SPB4 OS=Ajellomy...  75.9    8e-13 
sp|A5DC85|DBP9_PICGU ATP-dependent RNA helicase DBP9 OS=Meyerozym...  75.1    1e-12 
sp|Q4IJ56|DBP9_GIBZE ATP-dependent RNA helicase DBP9 OS=Gibberell...  75.1    1e-12 
sp|Q06218|DBP9_YEAST ATP-dependent RNA helicase DBP9 OS=Saccharom...  74.7    2e-12 
sp|A7A1G0|DBP9_YEAS7 ATP-dependent RNA helicase DBP9 OS=Saccharom...  74.7    2e-12 
sp|A2YV85|RH29_ORYSI DEAD-box ATP-dependent RNA helicase 29 OS=Or...  74.3    3e-12 
sp|Q4X1X0|MRH4_ASPFU ATP-dependent RNA helicase mrh4, mitochondri...  73.9    3e-12 
sp|A7E436|DBP8_SCLS1 ATP-dependent RNA helicase dbp8 OS=Sclerotin...  73.6    3e-12 
sp|A5DR68|MRH4_PICGU ATP-dependent RNA helicase MRH4, mitochondri...  73.6    3e-12 
sp|A3BT52|RH29_ORYSJ DEAD-box ATP-dependent RNA helicase 29 OS=Or...  73.9    3e-12 
sp|Q9PA24|RHLB_XYLFA ATP-dependent RNA helicase RhlB OS=Xylella f...  73.2    3e-12 
sp|Q8N8A6|DDX51_HUMAN ATP-dependent RNA helicase DDX51 OS=Homo sa...  73.6    4e-12 
sp|A5DEZ5|MS116_PICGU ATP-dependent RNA helicase MSS116, mitochon...  73.6    4e-12 
sp|A1CSR1|MRH4_ASPCL ATP-dependent RNA helicase mrh4, mitochondri...  73.2    5e-12 
sp|Q2UBZ5|SPB4_ASPOR ATP-dependent rRNA helicase spb4 OS=Aspergil...  72.8    6e-12 
sp|Q1E7Y4|MAK5_COCIM ATP-dependent RNA helicase MAK5 OS=Coccidioi...  72.8    6e-12 
sp|A4R8G3|DBP8_PYRO7 ATP-dependent RNA helicase DBP8 OS=Pyricular...  72.4    6e-12 
sp|Q2UQW3|ROK1_ASPOR ATP-dependent RNA helicase rok1 OS=Aspergill...  72.4    9e-12 
sp|Q6CEB8|DRS1_YARLI ATP-dependent RNA helicase DRS1 OS=Yarrowia ...  72.4    9e-12 
sp|Q75F95|DRS1_EREGS ATP-dependent RNA helicase DRS1 OS=Eremothec...  72.0    1e-11 
sp|A1CNK1|ROK1_ASPCL ATP-dependent RNA helicase rok1 OS=Aspergill...  72.0    1e-11 
sp|P0CQ91|MAK5_CRYNB ATP-dependent RNA helicase MAK5 OS=Cryptococ...  72.0    1e-11 
sp|P0CQ90|MAK5_CRYNJ ATP-dependent RNA helicase MAK5 OS=Cryptococ...  72.0    1e-11 
sp|O80792|RH33_ARATH Putative DEAD-box ATP-dependent RNA helicase...  72.0    1e-11 
sp|A1D1E3|ROK1_NEOFI ATP-dependent RNA helicase rok1 OS=Neosartor...  72.0    1e-11 
sp|Q4WRH5|ROK1_ASPFU ATP-dependent RNA helicase rok1 OS=Aspergill...  71.6    2e-11 
sp|Q54TD7|DDX24_DICDI ATP-dependent RNA helicase ddx24 OS=Dictyos...  71.6    2e-11 
sp|A2QAB5|ROK1_ASPNC ATP-dependent RNA helicase rok1 OS=Aspergill...  71.2    2e-11 
sp|P53166|MRH4_YEAST ATP-dependent RNA helicase MRH4, mitochondri...  70.9    2e-11 
sp|A6ZUB2|MRH4_YEAS7 ATP-dependent RNA helicase MRH4, mitochondri...  70.9    2e-11 
sp|Q0CQF3|SPB4_ASPTN ATP-dependent rRNA helicase spb4 OS=Aspergil...  71.2    2e-11 
sp|P0C2N7|DRS1_CHAGB ATP-dependent RNA helicase DRS1 OS=Chaetomiu...  71.2    2e-11 
sp|P52271|Y308_MYCGE Probable ATP-dependent RNA helicase MG308 OS...  70.1    3e-11 
sp|Q2UMY7|MAK5_ASPOR ATP-dependent RNA helicase mak5 OS=Aspergill...  70.5    3e-11 
sp|Q5BET6|ROK1_EMENI ATP-dependent RNA helicase rok1 OS=Emericell...  70.5    3e-11 
sp|Q7S6F3|DBP9_NEUCR ATP-dependent RNA helicase dbp-9 OS=Neurospo...  70.5    3e-11 
sp|A2QE29|SPB4_ASPNC ATP-dependent rRNA helicase spb4 OS=Aspergil...  70.1    4e-11 
sp|Q5ANB2|DBP10_CANAL ATP-dependent RNA helicase DBP10 OS=Candida...  70.5    4e-11 
sp|Q54CD6|DDX5_DICDI Probable ATP-dependent RNA helicase ddx5 OS=...  70.1    5e-11 
sp|Q6NZQ2|DDX31_MOUSE Probable ATP-dependent RNA helicase DDX31 O...  70.1    5e-11 
sp|Q0CMB0|ROK1_ASPTN ATP-dependent RNA helicase rok1 OS=Aspergill...  70.1    5e-11 
sp|Q54BD6|DDX51_DICDI Probable ATP-dependent RNA helicase ddx51 O...  69.3    6e-11 
sp|Q0U6X2|MAK5_PHANO ATP-dependent RNA helicase MAK5 OS=Phaeospha...  69.7    6e-11 
sp|Q0U397|MRH4_PHANO ATP-dependent RNA helicase MRH4, mitochondri...  69.7    6e-11 
sp|A5DLR3|DBP10_PICGU ATP-dependent RNA helicase DBP10 OS=Meyeroz...  69.7    7e-11 
sp|Q1E306|ROK1_COCIM ATP-dependent RNA helicase ROK1 OS=Coccidioi...  69.3    7e-11 
sp|Q4IPI1|ROK1_GIBZE ATP-dependent RNA helicase ROK1 OS=Gibberell...  69.3    8e-11 
sp|P0CR04|ROK1_CRYNJ ATP-dependent RNA helicase ROK1 OS=Cryptococ...  68.6    1e-10 
sp|P0CR05|ROK1_CRYNB ATP-dependent RNA helicase ROK1 OS=Cryptococ...  68.6    1e-10 
sp|A7F2S3|SPB4_SCLS1 ATP-dependent rRNA helicase spb4 OS=Scleroti...  68.6    1e-10 
sp|Q1E9B7|MRH4_COCIM ATP-dependent RNA helicase MRH4, mitochondri...  68.2    2e-10 
sp|Q0CZS8|HAS1_ASPTN ATP-dependent RNA helicase has1 OS=Aspergill...  68.2    2e-10 
sp|A6RMZ2|SPB4_BOTFB ATP-dependent rRNA helicase spb4 OS=Botryoti...  67.8    2e-10 
sp|Q6BKH3|DBP7_DEBHA ATP-dependent RNA helicase DBP7 OS=Debaryomy...  67.8    2e-10 
sp|A5E1N2|ROK1_LODEL ATP-dependent RNA helicase ROK1 OS=Lodderomy...  67.4    2e-10 
sp|A4QX49|DBP7_PYRO7 ATP-dependent RNA helicase DBP7 OS=Pyricular...  67.4    3e-10 
sp|P0CR03|DBP8_CRYNB ATP-dependent RNA helicase DBP8 OS=Cryptococ...  67.4    3e-10 
sp|P0CR02|DBP8_CRYNJ ATP-dependent RNA helicase DBP8 OS=Cryptococ...  67.0    3e-10 
sp|O74393|MAK5_SCHPO ATP-dependent RNA helicase mak5 OS=Schizosac...  67.0    3e-10 
sp|Q0UP45|SPB4_PHANO ATP-dependent rRNA helicase SPB4 OS=Phaeosph...  67.0    4e-10 
sp|Q5AZA6|DBP9_EMENI ATP-dependent RNA helicase dbp9 OS=Emericell...  66.6    5e-10 
sp|Q59S59|MRH4_CANAL ATP-dependent RNA helicase MRH4, mitochondri...  66.2    6e-10 
sp|A6RSH5|DBP7_BOTFB ATP-dependent RNA helicase dbp7 OS=Botryotin...  66.6    6e-10 
sp|Q5K5B6|RH57_ORYSJ DEAD-box ATP-dependent RNA helicase 57 OS=Or...  65.9    7e-10 
sp|P47664|Y425_MYCGE Probable ATP-dependent RNA helicase MG425 OS...  65.9    7e-10 
sp|Q0CY48|DBP9_ASPTN ATP-dependent RNA helicase dbp9 OS=Aspergill...  66.2    7e-10 
sp|Q2HCV7|ROK1_CHAGB ATP-dependent RNA helicase ROK1 OS=Chaetomiu...  66.2    7e-10 
sp|A4RMV8|ROK1_PYRO7 ATP-dependent RNA helicase ROK1 OS=Pyricular...  66.2    7e-10 
sp|A2QA23|DBP6_ASPNC ATP-dependent RNA helicase dbp6 OS=Aspergill...  65.9    9e-10 
sp|P0CQ84|HAS1_CRYNJ ATP-dependent RNA helicase HAS1 OS=Cryptococ...  65.9    9e-10 
sp|P0CQ85|HAS1_CRYNB ATP-dependent RNA helicase HAS1 OS=Cryptococ...  65.9    9e-10 
sp|O13622|MS116_SCHPO ATP-dependent RNA helicase mss116, mitochon...  65.5    1e-09 
sp|Q8GXD6|RH49_ARATH DEAD-box ATP-dependent RNA helicase 49 OS=Ar...  65.5    1e-09 
sp|Q6CUI6|DBP9_KLULA ATP-dependent RNA helicase DBP9 OS=Kluyverom...  65.5    1e-09 
sp|Q2UFL0|DBP9_ASPOR ATP-dependent RNA helicase dbp9 OS=Aspergill...  65.1    1e-09 
sp|Q6H601|RH22_ORYSJ DEAD-box ATP-dependent RNA helicase 22 OS=Or...  65.1    1e-09 
sp|A6SNX1|DBP9_BOTFB ATP-dependent RNA helicase dbp9 OS=Botryotin...  65.1    1e-09 
sp|Q6C7D2|HAS1_YARLI ATP-dependent RNA helicase HAS1 OS=Yarrowia ...  65.1    2e-09 
sp|P26802|DDX51_DROME Probable ATP-dependent RNA helicase Dbp73D ...  65.1    2e-09 
sp|Q4X0C2|DBP9_ASPFU ATP-dependent RNA helicase dbp9 OS=Aspergill...  64.7    2e-09 
sp|P0CR08|SPB4_CRYNJ ATP-dependent rRNA helicase SPB4 OS=Cryptoco...  64.7    2e-09 
sp|P0CR09|SPB4_CRYNB ATP-dependent rRNA helicase SPB4 OS=Cryptoco...  64.7    2e-09 
sp|Q4HVW2|SPB4_GIBZE ATP-dependent rRNA helicase SPB4 OS=Gibberel...  64.3    2e-09 
sp|Q7SFC8|ROK1_NEUCR ATP-dependent RNA helicase rok1 OS=Neurospor...  64.7    2e-09 
sp|A1DHV3|DBP9_NEOFI ATP-dependent RNA helicase dbp9 OS=Neosartor...  64.3    2e-09 
sp|Q75AE1|ROK1_EREGS ATP-dependent RNA helicase ROK1 OS=Eremothec...  64.3    3e-09 
sp|A6R2L6|DBP9_AJECN ATP-dependent RNA helicase DBP9 OS=Ajellomyc...  64.3    3e-09 
sp|Q8TFL3|DBP7_CANGA ATP-dependent RNA helicase DBP7 OS=Candida g...  63.9    3e-09 
sp|Q54VF1|DDX56_DICDI Probable ATP-dependent RNA helicase ddx56 O...  63.9    3e-09 
sp|O60080|DBP9_SCHPO ATP-dependent RNA helicase dbp9 OS=Schizosac...  63.9    3e-09 
sp|Q6BLM5|DBP9_DEBHA ATP-dependent RNA helicase DBP9 OS=Debaryomy...  63.5    4e-09 
sp|Q09916|HAS1_SCHPO ATP-dependent RNA helicase has1 OS=Schizosac...  63.5    4e-09 
sp|A7EM78|DBP9_SCLS1 ATP-dependent RNA helicase dbp9 OS=Sclerotin...  63.5    4e-09 
sp|A2QCW6|DBP9_ASPNC ATP-dependent RNA helicase dbp9 OS=Aspergill...  63.5    4e-09 
sp|Q5BGX6|DBP7_EMENI ATP-dependent RNA helicase dbp7 OS=Emericell...  63.9    4e-09 
sp|Q754J2|DBP7_EREGS ATP-dependent RNA helicase DBP7 OS=Eremothec...  63.5    4e-09 
sp|Q6CSW1|ROK1_KLULA ATP-dependent RNA helicase ROK1 OS=Kluyverom...  63.5    5e-09 
sp|A1C7F7|DBP9_ASPCL ATP-dependent RNA helicase dbp9 OS=Aspergill...  63.2    5e-09 
sp|A5DK47|DBP6_PICGU ATP-dependent RNA helicase DBP6 OS=Meyerozym...  63.2    5e-09 
sp|Q6BH93|HAS1_DEBHA ATP-dependent RNA helicase HAS1 OS=Debaryomy...  63.2    5e-09 
sp|A5E5F7|MRH4_LODEL ATP-dependent RNA helicase MRH4, mitochondri...  63.2    5e-09 
sp|Q8K363|DDX18_MOUSE ATP-dependent RNA helicase DDX18 OS=Mus mus...  63.2    6e-09 
sp|Q4IBS2|MAK5_GIBZE ATP-dependent RNA helicase MAK5 OS=Gibberell...  63.2    7e-09 
sp|A7TPC9|DBP9_VANPO ATP-dependent RNA helicase DBP9 OS=Vanderwal...  62.8    8e-09 
sp|Q1DWF4|DBP9_COCIM ATP-dependent RNA helicase DBP9 OS=Coccidioi...  62.4    9e-09 
sp|Q9NVP1|DDX18_HUMAN ATP-dependent RNA helicase DDX18 OS=Homo sa...  62.8    9e-09 
sp|Q59ZH9|MAK5_CANAL ATP-dependent RNA helicase MAK5 OS=Candida a...  62.8    9e-09 
sp|Q5AK59|HAS1_CANAL ATP-dependent RNA helicase HAS1 OS=Candida a...  62.4    1e-08 
sp|Q1EA54|HAS1_COCIM ATP-dependent RNA helicase HAS1 OS=Coccidioi...  62.0    1e-08 
sp|Q4P6N0|HAS1_USTMA ATP-dependent RNA helicase HAS1 OS=Ustilago ...  62.0    1e-08 
sp|Q4IEK8|HAS1_GIBZE ATP-dependent RNA helicase HAS1 OS=Gibberell...  62.0    1e-08 
sp|Q4WQM4|HAS1_ASPFU ATP-dependent RNA helicase has1 OS=Aspergill...  62.0    1e-08 
sp|Q0UHM7|DBP7_PHANO ATP-dependent RNA helicase DBP7 OS=Phaeospha...  62.0    1e-08 
sp|A1CW14|HAS1_NEOFI ATP-dependent RNA helicase has1 OS=Neosartor...  62.0    1e-08 
sp|Q6BV58|MAK5_DEBHA ATP-dependent RNA helicase MAK5 OS=Debaryomy...  62.0    1e-08 
sp|Q6BV94|MRH4_DEBHA ATP-dependent RNA helicase MRH4, mitochondri...  61.2    2e-08 
sp|Q2UE66|DBP7_ASPOR ATP-dependent RNA helicase dbp7 OS=Aspergill...  61.6    2e-08 
sp|Q0UZ59|DBP9_PHANO ATP-dependent RNA helicase DBP9 OS=Phaeospha...  61.2    2e-08 
sp|Q751D1|DBP6_EREGS ATP-dependent RNA helicase DBP6 OS=Eremothec...  60.8    3e-08 
sp|A5DPU0|MAK5_PICGU ATP-dependent RNA helicase MAK5 OS=Meyerozym...  61.2    3e-08 
sp|A4QTR1|DBP9_PYRO7 ATP-dependent RNA helicase DBP9 OS=Pyricular...  60.8    3e-08 
sp|Q9LIH9|RH51_ARATH DEAD-box ATP-dependent RNA helicase 51 OS=Ar...  60.8    3e-08 
sp|A6ZSB3|DBP6_YEAS7 ATP-dependent RNA helicase DBP6 OS=Saccharom...  60.8    3e-08 
sp|P53734|DBP6_YEAST ATP-dependent RNA helicase DBP6 OS=Saccharom...  60.8    3e-08 
sp|A3LV40|DBP9_PICST ATP-dependent RNA helicase DBP9 OS=Scheffers...  60.5    4e-08 
sp|P75335|Y443_MYCPN Probable ATP-dependent RNA helicase MG308 ho...  59.7    5e-08 
sp|Q4P9E5|SPB4_USTMA ATP-dependent rRNA helicase SPB4 OS=Ustilago...  60.5    5e-08 
sp|A2RA55|DBP7_ASPNC ATP-dependent RNA helicase dbp7 OS=Aspergill...  60.1    5e-08 
sp|Q0DWT8|RH1_ORYSJ DEAD-box ATP-dependent RNA helicase 1 OS=Oryz...  59.7    6e-08 
sp|A6RCJ9|MRH4_AJECN ATP-dependent RNA helicase MRH4, mitochondri...  60.1    6e-08 
sp|Q944S1|RH22_ARATH DEAD-box ATP-dependent RNA helicase 22 OS=Ar...  59.7    6e-08 
sp|Q9VD51|DDX18_DROME Probable ATP-dependent RNA helicase pitchou...  59.7    7e-08 
sp|A3GG51|MAK5_PICST ATP-dependent RNA helicase MAK5 OS=Scheffers...  59.7    7e-08 
sp|Q6CN92|SPB4_KLULA ATP-dependent rRNA helicase SPB4 OS=Kluyvero...  58.9    1e-07 
sp|Q0JFN7|RH58_ORYSJ DEAD-box ATP-dependent RNA helicase 58, chlo...  58.5    1e-07 
sp|Q7RZH4|MAK5_NEUCR ATP-dependent RNA helicase mak-5 OS=Neurospo...  58.9    1e-07 
sp|B0LPN4|RYR2_RAT Ryanodine receptor 2 OS=Rattus norvegicus OX=1...  58.5    2e-07 
sp|Q61R02|DDX55_CAEBR Probable ATP-dependent RNA helicase DDX55 h...  58.2    2e-07 
sp|P73421|RECQ_SYNY3 ATP-dependent DNA helicase RecQ OS=Synechocy...  57.8    2e-07 
sp|Q3E9C3|RH58_ARATH DEAD-box ATP-dependent RNA helicase 58, chlo...  57.4    3e-07 
sp|A5DUB2|MAK5_LODEL ATP-dependent RNA helicase MAK5 OS=Lodderomy...  57.8    3e-07 
sp|E9Q401|RYR2_MOUSE Ryanodine receptor 2 OS=Mus musculus OX=1009...  57.8    4e-07 
sp|P30957|RYR2_RABIT Ryanodine receptor 2 OS=Oryctolagus cuniculu...  57.4    5e-07 
sp|Q6FUA6|DBP9_CANGA ATP-dependent RNA helicase DBP9 OS=Candida g...  57.0    5e-07 
sp|Q5A4P9|DBP9_CANAL ATP-dependent RNA helicase DBP9 OS=Candida a...  56.6    7e-07 
sp|Q92736|RYR2_HUMAN Ryanodine receptor 2 OS=Homo sapiens OX=9606...  57.0    7e-07 
sp|A7EWH6|MRH4_SCLS1 ATP-dependent RNA helicase mrh4, mitochondri...  56.2    7e-07 
sp|Q4Z8K6|RBP9X_DROME Ran-binding proteins 9/10 homolog OS=Drosop...  56.6    8e-07 
sp|Q9FVV4|RH55_ARATH DEAD-box ATP-dependent RNA helicase 55 OS=Ar...  55.8    8e-07 
sp|Q4P7M1|DBP9_USTMA ATP-dependent RNA helicase DBP9 OS=Ustilago ...  56.2    9e-07 
sp|P0CT33|TLH1_SCHPO ATP-dependent DNA helicase tlh1 (Fragment) O...  56.2    1e-06 
sp|Q1RKN3|TLH2_SCHPO ATP-dependent DNA helicase tlh2 OS=Schizosac...  56.2    1e-06 
sp|P36120|DBP7_YEAST ATP-dependent RNA helicase DBP7 OS=Saccharom...  55.8    1e-06 
sp|Q54CH6|IF4AX_DICDI Putative eukaryotic initiation factor 4A-li...  53.9    1e-06 
sp|A6ZZY8|DBP7_YEAS7 ATP-dependent RNA helicase DBP7 OS=Saccharom...  55.8    1e-06 
sp|A5E572|DBP9_LODEL ATP-dependent RNA helicase DBP9 OS=Lodderomy...  55.5    1e-06 
sp|P34640|DDX55_CAEEL Probable ATP-dependent RNA helicase DDX55 h...  55.5    1e-06 
sp|A4QTC6|MRH4_PYRO7 ATP-dependent RNA helicase MRH4, mitochondri...  55.5    2e-06 
sp|Q869P0|DDX31_DICDI Probable ATP-dependent RNA helicase ddx31 O...  55.1    2e-06 
sp|Q4WYJ7|SPB4_ASPFU ATP-dependent rRNA helicase spb4 OS=Aspergil...  54.7    3e-06 
sp|A1D699|SPB4_NEOFI ATP-dependent rRNA helicase spb4 OS=Neosarto...  54.7    3e-06 
sp|A2QZ71|MRH4_ASPNC ATP-dependent RNA helicase mrh4, mitochondri...  53.9    4e-06 
sp|A7TE77|MRH4_VANPO ATP-dependent RNA helicase MRH4, mitochondri...  53.5    5e-06 
sp|P0CQ94|DBP7_CRYNJ ATP-dependent RNA helicase DBP7 OS=Cryptococ...  53.5    6e-06 
sp|P0CQ95|DBP7_CRYNB ATP-dependent RNA helicase DBP7 OS=Cryptococ...  53.5    6e-06 
sp|Q5B8F4|SPB4_EMENI ATP-dependent rRNA helicase spb4 OS=Emericel...  53.5    6e-06 
sp|Q8IBN8|DDX31_PLAF7 ATP-dependent DNA helicase DDX31 OS=Plasmod...  53.5    7e-06 
sp|P0CR10|DBP9_CRYNJ ATP-dependent RNA helicase DBP9 OS=Cryptococ...  53.1    8e-06 
sp|P0CR11|DBP9_CRYNB ATP-dependent RNA helicase DBP9 OS=Cryptococ...  53.1    8e-06 
sp|Q74ZC1|DBP9_EREGS ATP-dependent RNA helicase DBP9 OS=Eremothec...  53.1    8e-06 
sp|A1CTL8|MAK5_ASPCL ATP-dependent RNA helicase mak5 OS=Aspergill...  53.1    9e-06 
sp|Q6CWQ5|MRH4_KLULA ATP-dependent RNA helicase MRH4, mitochondri...  52.8    1e-05 
sp|Q1E1R7|SPB4_COCIM ATP-dependent rRNA helicase SPB4 OS=Coccidio...  52.8    1e-05 
sp|Q755C5|MRH4_EREGS ATP-dependent RNA helicase MRH4, mitochondri...  51.6    2e-05 
sp|Q5R881|RSPRY_PONAB RING finger and SPRY domain-containing prot...  51.6    2e-05 
sp|Q95LP3|RSPRY_MACFA RING finger and SPRY domain-containing prot...  51.2    2e-05 
sp|Q96DX4|RSPRY_HUMAN RING finger and SPRY domain-containing prot...  51.2    2e-05 
sp|Q8BVR6|RSPRY_MOUSE RING finger and SPRY domain-containing prot...  51.2    3e-05 
sp|Q4P0Y5|DBP7_USTMA ATP-dependent RNA helicase DBP7 OS=Ustilago ...  51.6    3e-05 
sp|A1CL59|SPB4_ASPCL ATP-dependent rRNA helicase spb4 OS=Aspergil...  50.4    5e-05 
sp|Q9W3Y5|Y4443_DROME Putative ATP-dependent RNA helicase CG14443...  50.1    7e-05 
sp|Q9C8J7|TRO_ARATH Protein TRAUCO OS=Arabidopsis thaliana OX=370...  49.7    8e-05 
sp|O13983|HRQ1_SCHPO ATP-dependent helicase hrq1 OS=Schizosacchar...  49.7    1e-04 
sp|Q8L840|RQL4A_ARATH ATP-dependent DNA helicase Q-like 4A OS=Ara...  49.3    1e-04 
sp|Q24498|RYR_DROME Ryanodine receptor OS=Drosophila melanogaster...  49.7    1e-04 
sp|Q9PTY5|RANB9_XENLA Ran-binding protein 9 OS=Xenopus laevis OX=...  48.9    2e-04 
sp|Q1LUS8|RBP10_DANRE Ran-binding protein 10 OS=Danio rerio OX=79...  48.1    2e-04 
sp|Q28FM1|RANB9_XENTR Ran-binding protein 9 OS=Xenopus tropicalis...  48.1    3e-04 
sp|A1L252|RANB9_DANRE Ran-binding protein 9 OS=Danio rerio OX=795...  48.1    3e-04 
sp|Q6VN19|RBP10_MOUSE Ran-binding protein 10 OS=Mus musculus OX=1...  47.8    3e-04 
sp|Q96S59|RANB9_HUMAN Ran-binding protein 9 OS=Homo sapiens OX=96...  47.8    3e-04 
sp|P69566|RANB9_MOUSE Ran-binding protein 9 OS=Mus musculus OX=10...  47.8    3e-04 
sp|Q6VN20|RBP10_HUMAN Ran-binding protein 10 OS=Homo sapiens OX=9...  47.8    3e-04 
sp|A3KMV8|RBP10_BOVIN Ran-binding protein 10 OS=Bos taurus OX=991...  47.8    3e-04 
sp|O34748|RECQ_BACSU ATP-dependent DNA helicase RecQ OS=Bacillus ...  47.4    5e-04 
sp|O94712|YC5C_SCHPO Uncharacterized protein C1259.12c OS=Schizos...  46.6    8e-04 
sp|A8WK63|RECQ1_CAEBR Putative ATP-dependent DNA helicase Q1 OS=C...  46.6    8e-04 
sp|P11716|RYR1_RABIT Ryanodine receptor 1 OS=Oryctolagus cuniculu...  46.6    0.001 
sp|P16960|RYR1_PIG Ryanodine receptor 1 OS=Sus scrofa OX=9823 GN=...  46.6    0.001 
sp|P21817|RYR1_HUMAN Ryanodine receptor 1 OS=Homo sapiens OX=9606...  46.2    0.001 
sp|A7EQ00|SSH4_SCLS1 Protein ssh4 OS=Sclerotinia sclerotiorum (st...  45.8    0.001 
sp|E9PZQ0|RYR1_MOUSE Ryanodine receptor 1 OS=Mus musculus OX=1009...  46.2    0.001 
sp|Q75NR7|RECQ4_MOUSE ATP-dependent DNA helicase Q4 OS=Mus muscul...  46.2    0.001 
sp|O88700|BLM_MOUSE RecQ-like DNA helicase BLM OS=Mus musculus OX...  45.8    0.002 
sp|A6S3E0|SSH4_BOTFB Protein ssh4 OS=Botryotinia fuckeliana (stra...  45.4    0.002 
sp|A2AGL3|RYR3_MOUSE Ryanodine receptor 3 OS=Mus musculus OX=1009...  45.8    0.002 
sp|Q1E2D2|SSH4_COCIM Protein SSH4 OS=Coccidioides immitis (strain...  45.1    0.002 
sp|O88838|SPSB2_MOUSE SPRY domain-containing SOCS box protein 2 O...  43.9    0.003 
sp|Q15413|RYR3_HUMAN Ryanodine receptor 3 OS=Homo sapiens OX=9606...  45.1    0.003 
sp|Q5M877|SPSB2_RAT SPRY domain-containing SOCS box protein 2 OS=...  43.5    0.004 
sp|Q5M9B1|SPSB3_XENLA SPRY domain-containing SOCS box protein 3 O...  43.9    0.004 
sp|Q9TXJ8|RECQ1_CAEEL Putative ATP-dependent DNA helicase Q1 OS=C...  44.3    0.005 
sp|A1CNW8|SSH4_ASPCL Protein ssh4 OS=Aspergillus clavatus (strain...  43.9    0.005 
sp|P54132|BLM_HUMAN RecQ-like DNA helicase BLM OS=Homo sapiens OX...  44.3    0.005 
sp|F4JFJ3|Y3206_ARATH ATP-dependent DNA helicase At3g02060, chlor...  43.5    0.007 
sp|Q9DEY9|BLM_XENLA RecQ-like DNA helicase BLM OS=Xenopus laevis ...  43.9    0.007 
sp|Q28DT9|SPSB3_XENTR SPRY domain-containing SOCS box protein 3 O...  42.7    0.008 
sp|Q05549|HRQ1_YEAST ATP-dependent helicase HRQ1 OS=Saccharomyces...  43.5    0.009 
sp|G5EFZ3|ASH2_CAEEL Set1/Ash2 histone methyltransferase complex ...  43.1    0.009 
sp|Q9FT70|RQL4B_ARATH ATP-dependent DNA helicase Q-like 4B OS=Ara...  43.5    0.009 
sp|Q0WVW7|RQL5_ARATH ATP-dependent DNA helicase Q-like 5 OS=Arabi...  42.7    0.012 
sp|Q99619|SPSB2_HUMAN SPRY domain-containing SOCS box protein 2 O...  41.6    0.014 
sp|F4INA9|RECG_ARATH ATP-dependent DNA helicase homolog RECG, chl...  42.7    0.015 
sp|Q6FJJ8|MRH4_CANGA ATP-dependent RNA helicase MRH4, mitochondri...  42.4    0.015 
sp|O94761|RECQ4_HUMAN ATP-dependent DNA helicase Q4 OS=Homo sapie...  42.7    0.016 
sp|P15043|RECQ_ECOLI ATP-dependent DNA helicase RecQ OS=Escherich...  42.0    0.021 
sp|Q9I920|BLM_CHICK RecQ-like DNA helicase BLM OS=Gallus gallus O...  42.0    0.021 
sp|Q5N870|DCL3A_ORYSJ Endoribonuclease Dicer homolog 3a OS=Oryza ...  42.0    0.028 
sp|Q96A44|SPSB4_HUMAN SPRY domain-containing SOCS box protein 4 O...  40.8    0.031 
sp|Q9TS33|RYR3_RABIT Ryanodine receptor 3 OS=Oryctolagus cuniculu...  41.6    0.037 
sp|Q2VPA6|HELQ_MOUSE Helicase POLQ-like OS=Mus musculus OX=10090 ...  41.2    0.038 
sp|Q9BQ75|CMS1_HUMAN Protein CMSS1 OS=Homo sapiens OX=9606 GN=CMS...  40.4    0.042 
sp|Q9CL21|RECQ_PASMU ATP-dependent DNA helicase RecQ OS=Pasteurel...  41.2    0.042 
sp|Q8R5F7|IFIH1_MOUSE Interferon-induced helicase C domain-contai...  40.8    0.047 
sp|Q9BYX4|IFIH1_HUMAN Interferon-induced helicase C domain-contai...  40.8    0.055 
sp|Q8R5B6|SPSB4_MOUSE SPRY domain-containing SOCS box protein 4 O...  40.0    0.056 
sp|O09053|WRN_MOUSE Bifunctional 3'-5' exonuclease/ATP-dependent ...  40.8    0.057 
sp|P85199|RH3_HELAN DEAD-box ATP-dependent RNA helicase 3 (Fragme...  39.7    0.064 
sp|Q75AA7|MPH1_EREGS ATP-dependent DNA helicase MPH1 OS=Eremothec...  40.4    0.074 
sp|P58174|UVRB_MYCPU UvrABC system protein B OS=Mycoplasmopsis pu...  40.0    0.075 
sp|Q58969|Y1574_METJA Uncharacterized ATP-dependent helicase MJ15...  40.0    0.076 
sp|Q9ZJ57|MFD_HELPJ Transcription-repair-coupling factor OS=Helic...  40.4    0.077 
sp|O26066|MFD_HELPY Transcription-repair-coupling factor OS=Helic...  40.4    0.080 
sp|Q58900|Y1505_METJA Putative ATP-dependent RNA helicase MJ1505 ...  40.0    0.081 
sp|Q9VGI8|BLM_DROME RecQ-like DNA helicase Blm OS=Drosophila mela...  40.4    0.082 
sp|A7LFZ6|DCL4_ORYSJ Endoribonuclease Dicer homolog 4 OS=Oryza sa...  40.4    0.084 
sp|P35187|SGS1_YEAST ATP-dependent helicase SGS1 OS=Saccharomyces...  40.0    0.085 
sp|P54509|YQHH_BACSU Uncharacterized ATP-dependent helicase YqhH ...  40.0    0.089 
sp|P40724|RECQ_SALTY ATP-dependent DNA helicase RecQ OS=Salmonell...  40.0    0.094 
sp|Q5XJK9|CMS1_DANRE Protein CMSS1 OS=Danio rerio OX=7955 GN=cmss...  39.3    0.10  
sp|Q652L2|HIRA_ORYSJ Protein HIRA OS=Oryza sativa subsp. japonica...  40.0    0.10  
sp|Q9UT23|MPH1_SCHPO ATP-dependent DNA helicase fml1 OS=Schizosac...  39.7    0.10  
sp|Q68EV5|CMS1_XENLA Protein CMSS1 OS=Xenopus laevis OX=8355 GN=c...  38.9    0.11  
sp|A4RHU9|DCL2_PYRO7 Dicer-like protein 2 OS=Pyricularia oryzae (...  39.7    0.12  
sp|A7TSV4|MPH1_VANPO ATP-dependent DNA helicase MPH1 OS=Vanderwal...  39.7    0.13  
sp|Q96UB6|SSH4_NEUCR Protein ssh4 OS=Neurospora crassa (strain AT...  39.3    0.14  
sp|Q8BGE5|FANCM_MOUSE Fanconi anemia group M protein homolog OS=M...  39.7    0.15  
sp|Q3MHZ2|SPSB3_BOVIN SPRY domain-containing SOCS box protein 3 O...  38.5    0.18  
sp|O93530|WRN_XENLA Bifunctional 3'-5' exonuclease/ATP-dependent ...  39.3    0.18  
sp|Q5FVR6|CMS1_RAT Protein CMSS1 OS=Rattus norvegicus OX=10116 GN...  38.1    0.20  
sp|Q7XD96|DCL3B_ORYSJ Endoribonuclease Dicer homolog 3b OS=Oryza ...  38.9    0.21  
sp|F1LMY4|RYR1_RAT Ryanodine receptor 1 OS=Rattus norvegicus OX=1...  38.9    0.21  
sp|A0A1D5PRR9|FANCM_CHICK Fanconi anemia group M protein OS=Gallu...  38.9    0.22  
sp|B4KNC5|FBSP1_DROMO F-box/SPRY domain-containing protein 1 OS=D...  38.1    0.22  
sp|P53076|VID30_YEAST Vacuolar import and degradation protein 30 ...  38.9    0.22  
sp|P50729|RECS_BACSU Probable ATP-dependent DNA helicase RecS OS=...  38.5    0.23  
sp|A6ZVS0|MPH1_YEAS7 ATP-dependent DNA helicase MPH1 OS=Saccharom...  38.9    0.23  
sp|Q57742|HELX_METJA Uncharacterized ATP-dependent helicase MJ029...  38.5    0.23  
sp|P40562|MPH1_YEAST ATP-dependent DNA helicase MPH1 OS=Saccharom...  38.5    0.24  
sp|Q6PJ21|SPSB3_HUMAN SPRY domain-containing SOCS box protein 3 O...  38.1    0.27  
sp|Q0CEI2|DCL2_ASPTN Dicer-like protein 2 OS=Aspergillus terreus ...  38.5    0.29  
sp|Q571F5|SPSB3_MOUSE SPRY domain-containing SOCS box protein 3 O...  38.1    0.29  
sp|Q0UL22|DCL2_PHANO Dicer-like protein 2 OS=Phaeosphaeria nodoru...  38.5    0.30  
sp|Q0U6G5|AMPP3_PHANO Probable Xaa-Pro aminopeptidase PEPP OS=Pha...  38.1    0.30  
sp|A2QX45|DCL22_ASPNC Dicer-like protein 2-2 OS=Aspergillus niger...  38.1    0.34  
sp|Q2T9Y1|CC026_BOVIN Uncharacterized protein C3orf26 homolog OS=...  37.4    0.36  
sp|Q581T1|REH2_TRYB2 RNA editing associated helicase 2 OS=Trypano...  38.1    0.45  
sp|P30015|LHR_ECOLI Probable ATP-dependent helicase Lhr OS=Escher...  37.7    0.48  
sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 ...  37.7    0.52  
sp|P43809|RECG_HAEIN ATP-dependent DNA helicase RecG OS=Haemophil...  37.4    0.53  
sp|Q9FT74|RQL1_ARATH ATP-dependent DNA helicase Q-like 1 OS=Arabi...  37.4    0.54  
sp|Q6TV19|DICER_DANRE Endoribonuclease Dicer OS=Danio rerio OX=79...  37.7    0.56  
sp|Q8R418|DICER_MOUSE Endoribonuclease Dicer OS=Mus musculus OX=1...  37.4    0.59  
sp|Q914K8|Y022_SIFVH Putative helicase 22 OS=Sulfolobus islandicu...  37.4    0.59  
sp|P34529|DCR1_CAEEL Endoribonuclease dcr-1 OS=Caenorhabditis ele...  37.4    0.63  
sp|A0MQH0|DICER_CRIGR Endoribonuclease Dicer OS=Cricetulus griseu...  37.4    0.64  
sp|Q14191|WRN_HUMAN Bifunctional 3'-5' exonuclease/ATP-dependent ...  37.4    0.72  
sp|A1CS00|MPH1_ASPCL ATP-dependent DNA helicase mph1 OS=Aspergill...  37.0    0.73  
sp|P71359|RECQ_HAEIN ATP-dependent DNA helicase RecQ OS=Haemophil...  37.0    0.76  
sp|Q39YM4|MURE_GEOMG UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2...  37.0    0.76  
sp|P46063|RECQ1_HUMAN ATP-dependent DNA helicase Q1 OS=Homo sapie...  37.0    0.76  
sp|Q25BN1|DICER_CHICK Endoribonuclease Dicer OS=Gallus gallus OX=...  37.0    0.80  
sp|P24230|RECG_ECOLI ATP-dependent DNA helicase RecG OS=Escherich...  37.0    0.82  
sp|Q8XD86|RECG_ECO57 ATP-dependent DNA helicase RecG OS=Escherich...  37.0    0.82  
sp|B7UM74|RECG_ECO27 ATP-dependent DNA helicase RecG OS=Escherich...  36.6    0.88  
sp|A1D9Z6|DCL2_NEOFI Dicer-like protein 2 OS=Neosartorya fischeri...  37.0    0.89  
sp|B3DLA6|DICER_XENTR Endoribonuclease Dicer OS=Xenopus tropicali...  37.0    0.91  
sp|Q9UPY3|DICER_HUMAN Endoribonuclease Dicer OS=Homo sapiens OX=9...  37.0    0.93  
sp|Q6TUI4|DICER_BOVIN Endoribonuclease Dicer OS=Bos taurus OX=991...  37.0    0.98  
sp|A4RN08|MPH1_PYRO7 ATP-dependent DNA helicase MPH1 OS=Pyricular...  36.6    1.0   
sp|B2WMQ2|AMPP3_PYRTR Probable Xaa-Pro aminopeptidase pepP OS=Pyr...  36.6    1.0   
sp|Q6FPQ3|MPH1_CANGA ATP-dependent DNA helicase MPH1 OS=Candida g...  36.6    1.1   
sp|Q5A1A0|MPH1_CANAL ATP-dependent DNA helicase MPH1 OS=Candida a...  36.6    1.1   
sp|A2R345|DCL21_ASPNC Dicer-like protein 2-1 OS=Aspergillus niger...  36.6    1.2   
sp|E3S6N7|AMPP3_PYRTT Probable Xaa-Pro aminopeptidase pepP OS=Pyr...  36.2    1.2   
sp|Q6CQX2|MPH1_KLULA ATP-dependent DNA helicase MPH1 OS=Kluyverom...  36.6    1.2   
sp|P18160|SPLA_DICDI Dual specificity protein kinase splA OS=Dict...  36.6    1.2   
sp|Q9CZT6|CMS1_MOUSE Protein CMSS1 OS=Mus musculus OX=10090 GN=Cm...  35.8    1.3   
sp|Q5RF63|RECQ1_PONAB ATP-dependent DNA helicase Q1 OS=Pongo abel...  36.2    1.3   
sp|I3XHK1|FANCM_ARATH DEAD-box ATP-dependent RNA helicase FANCM O...  36.2    1.3   
sp|P0CR12|MRH4_CRYNJ ATP-dependent RNA helicase MRH4, mitochondri...  36.2    1.3   
sp|P0CR13|MRH4_CRYNB ATP-dependent RNA helicase MRH4, mitochondri...  36.2    1.3   
sp|Q09811|HUS2_SCHPO ATP-dependent DNA helicase hus2/rqh1 OS=Schi...  36.2    1.4   
sp|Q9CMB4|RECG_PASMU ATP-dependent DNA helicase RecG OS=Pasteurel...  36.2    1.4   
sp|A4RKC3|DCL1_PYRO7 Dicer-like protein 1 OS=Pyricularia oryzae (...  36.2    1.5   
sp|A6M229|IOLC_CLOB8 5-dehydro-2-deoxygluconokinase OS=Clostridiu...  35.8    1.5   
sp|Q54900|RECG_STRPN ATP-dependent DNA helicase RecG OS=Streptoco...  35.8    1.5   
sp|Q16XV7|FBSP1_AEDAE F-box/SPRY domain-containing protein 1 OS=A...  35.4    1.6   
sp|B0X9V1|FBSP1_CULQU F-box/SPRY domain-containing protein 1 OS=C...  35.0    1.7   
sp|P0C5H7|DCL2_EMENI Dicer-like protein 2 OS=Emericella nidulans ...  35.8    1.8   
sp|Q8IYD8|FANCM_HUMAN Fanconi anemia group M protein OS=Homo sapi...  35.8    2.0   
sp|Q6BRF0|MPH1_DEBHA ATP-dependent DNA helicase MPH1 OS=Debaryomy...  35.8    2.1   
sp|P25055|PGKA_CRIFA Phosphoglycerate kinase, glycosomal OS=Crith...  35.4    2.1   
sp|F4HYD7|RANBM_ARATH Ran-binding protein M homolog OS=Arabidopsi...  35.4    2.2   
sp|Q7SCC1|DCL2_NEUCR Dicer-like protein 2 OS=Neurospora crassa (s...  35.4    2.2   
sp|Q9Z129|RECQ1_MOUSE ATP-dependent DNA helicase Q1 OS=Mus muscul...  35.4    2.4   
sp|Q6AYJ1|RECQ1_RAT ATP-dependent DNA helicase Q1 OS=Rattus norve...  35.4    2.4   
sp|Q2HG76|MPH1_CHAGB ATP-dependent DNA helicase MPH1 OS=Chaetomiu...  35.4    2.4   
sp|A1C9M6|DCL2_ASPCL Dicer-like protein 2 OS=Aspergillus clavatus...  35.4    2.4   
sp|Q4WA22|DCL2_ASPFU Dicer-like protein 2 OS=Aspergillus fumigatu...  35.4    2.5   
sp|O53873|XPB_MYCTU DNA helicase XPB OS=Mycobacterium tuberculosi...  35.0    2.6   
sp|Q8CSV3|RECG_STAES ATP-dependent DNA helicase RecG OS=Staphyloc...  35.4    2.6   
sp|Q9FT73|RECQ2_ARATH ATP-dependent DNA helicase Q-like 2 OS=Arab...  35.4    2.6   
sp|Q09884|DCR1_SCHPO Protein Dicer OS=Schizosaccharomyces pombe (...  35.4    2.6   
sp|Q9D5L7|SPSB1_MOUSE SPRY domain-containing SOCS box protein 1 O...  34.7    2.7   
sp|Q8K9I7|SYN_BUCAP Asparagine--tRNA ligase OS=Buchnera aphidicol...  35.0    2.7   
sp|Q2H0G2|DCL1_CHAGB Dicer-like protein 1 OS=Chaetomium globosum ...  35.4    2.8   
sp|P84634|DCL4_ARATH Dicer-like protein 4 OS=Arabidopsis thaliana...  35.4    2.8   
sp|B7IEY7|UVRB_THEAB UvrABC system protein B OS=Thermosipho afric...  35.0    2.8   
sp|Q0HLI3|MIAB_SHESM tRNA-2-methylthio-N(6)-dimethylallyladenosin...  35.0    2.8   
sp|Q9FT72|RQL3_ARATH ATP-dependent DNA helicase Q-like 3 OS=Arabi...  35.0    2.9   
sp|Q3ATT8|UVRB_CHLCH UvrABC system protein B OS=Chlorobium chloro...  35.0    3.1   
sp|Q96BD6|SPSB1_HUMAN SPRY domain-containing SOCS box protein 1 O...  34.3    3.1   
sp|Q5E9X6|SPSB1_BOVIN SPRY domain-containing SOCS box protein 1 O...  34.3    3.1   
sp|Q0HXT7|MIAB_SHESR tRNA-2-methylthio-N(6)-dimethylallyladenosin...  34.7    3.2   
sp|Q2H679|MRH4_CHAGB ATP-dependent RNA helicase MRH4, mitochondri...  34.7    3.4   
sp|A6RIS1|MPH1_BOTFB ATP-dependent DNA helicase MPH1 OS=Botryotin...  35.0    3.5   
sp|A8F8W9|UVRB_PSELT UvrABC system protein B OS=Pseudothermotoga ...  34.7    3.6   
sp|A7EFH4|MPH1_SCLS1 ATP-dependent DNA helicase mph1 OS=Sclerotin...  34.7    3.8   
sp|A3GH78|MPH1_PICST ATP-dependent DNA helicase MPH1 OS=Scheffers...  34.7    4.1   
sp|A0KTX4|MIAB_SHESA tRNA-2-methylthio-N(6)-dimethylallyladenosin...  34.3    4.4   
sp|Q7SDF3|MPH1_NEUCR ATP-dependent DNA helicase mph1 OS=Neurospor...  34.7    4.5   
sp|Q9KTE0|MIAB_VIBCH tRNA-2-methylthio-N(6)-dimethylallyladenosin...  34.3    4.6   
sp|A5F2X6|MIAB_VIBC3 tRNA-2-methylthio-N(6)-dimethylallyladenosin...  34.3    4.6   
sp|Q5AQN1|CCLA_EMENI COMPASS component cclA OS=Emericella nidulan...  34.3    4.6   
sp|Q3Z5V2|RAPA_SHISS RNA polymerase-associated protein RapA OS=Sh...  34.7    4.7   
sp|A8ALP3|RAPA_CITK8 RNA polymerase-associated protein RapA OS=Ci...  34.7    4.8   
sp|O59025|HELS_PYRHO ATP-dependent DNA helicase Hel308 OS=Pyrococ...  34.3    4.8   
sp|Q7UDT5|RAPA_SHIFL RNA polymerase-associated protein RapA OS=Sh...  34.3    4.8   
sp|Q0T8D8|RAPA_SHIF8 RNA polymerase-associated protein RapA OS=Sh...  34.3    4.8   
sp|B7LVT0|RAPA_ESCF3 RNA polymerase-associated protein RapA OS=Es...  34.3    4.8   
sp|B1LFZ3|RAPA_ECOSM RNA polymerase-associated protein RapA OS=Es...  34.3    4.8   
sp|Q8FL92|RAPA_ECOL6 RNA polymerase-associated protein RapA OS=Es...  34.3    4.8   
sp|Q0TLT1|RAPA_ECOL5 RNA polymerase-associated protein RapA OS=Es...  34.3    4.8   
sp|B7M0F4|RAPA_ECO8A RNA polymerase-associated protein RapA OS=Es...  34.3    4.8   
sp|B7NHG5|RAPA_ECO7I RNA polymerase-associated protein RapA OS=Es...  34.3    4.8   
sp|B7UIA5|RAPA_ECO27 RNA polymerase-associated protein RapA OS=Es...  34.3    4.8   
sp|A7ZHF0|RAPA_ECO24 RNA polymerase-associated protein RapA OS=Es...  34.3    4.8   
sp|Q1RGE0|RAPA_ECOUT RNA polymerase-associated protein RapA OS=Es...  34.3    4.9   
sp|B6HZ39|RAPA_ECOSE RNA polymerase-associated protein RapA OS=Es...  34.3    4.9   
sp|B7N7T3|RAPA_ECOLU RNA polymerase-associated protein RapA OS=Es...  34.3    4.9   
sp|P60240|RAPA_ECOLI RNA polymerase-associated protein RapA OS=Es...  34.3    4.9   
sp|B1IRB9|RAPA_ECOLC RNA polymerase-associated protein RapA OS=Es...  34.3    4.9   
sp|C4ZPY3|RAPA_ECOBW RNA polymerase-associated protein RapA OS=Es...  34.3    4.9   
sp|P60241|RAPA_ECO57 RNA polymerase-associated protein RapA OS=Es...  34.3    4.9   
sp|B7L4I0|RAPA_ECO55 RNA polymerase-associated protein RapA OS=Es...  34.3    4.9   
sp|B7MAI2|RAPA_ECO45 RNA polymerase-associated protein RapA OS=Es...  34.3    4.9   
sp|A1A7A6|RAPA_ECOK1 RNA polymerase-associated protein RapA OS=Es...  34.3    4.9   
sp|A7ZW09|RAPA_ECOHS RNA polymerase-associated protein RapA OS=Es...  34.3    4.9   
sp|B2U265|RAPA_SHIB3 RNA polymerase-associated protein RapA OS=Sh...  34.3    5.0   
sp|A6QPH9|ZMYM5_BOVIN Zinc finger MYM-type protein 5 OS=Bos tauru...  34.3    5.1   
sp|Q32K36|RAPA_SHIDS RNA polymerase-associated protein RapA OS=Sh...  34.3    5.1   
sp|B7MNR6|RAPA_ECO81 RNA polymerase-associated protein RapA OS=Es...  34.3    5.1   
sp|Q326H6|RAPA_SHIBS RNA polymerase-associated protein RapA OS=Sh...  34.3    5.2   
sp|Q8CX45|MIAB_SHEON tRNA-2-methylthio-N(6)-dimethylallyladenosin...  34.3    5.3   
sp|Q2URJ5|MPH1_ASPOR ATP-dependent DNA helicase mph1 OS=Aspergill...  34.3    5.3   
sp|B6DMK2|MER3_ORYSJ ATP-dependent DNA helicase MER3 homolog OS=O...  34.3    5.8   
sp|Q2VF18|DCL2_CRYPA Dicer-like protein 2 OS=Cryphonectria parasi...  34.3    6.0   
sp|Q4WKB5|MPH1_ASPFU ATP-dependent DNA helicase mph1 OS=Aspergill...  34.3    6.1   
sp|B0XMV6|MPH1_ASPFC ATP-dependent DNA helicase mph1 OS=Aspergill...  34.3    6.1   
sp|A0LJZ1|PGK_SYNFM Phosphoglycerate kinase OS=Syntrophobacter fu...  33.9    6.1   
sp|A1BI09|UVRB_CHLPD UvrABC system protein B OS=Chlorobium phaeob...  33.9    6.2   
sp|B4LMQ3|FBSP1_DROVI F-box/SPRY domain-containing protein 1 OS=D...  33.5    6.4   
sp|Q290L5|FBSP1_DROPS F-box/SPRY domain-containing protein 1 OS=D...  33.5    6.4   
sp|B4GBN7|FBSP1_DROPE F-box/SPRY domain-containing protein 1 OS=D...  33.5    6.4   
sp|Q07XC8|RAPA_SHEFN RNA polymerase-associated protein RapA OS=Sh...  33.9    7.0   
sp|A1D4V5|MPH1_NEOFI ATP-dependent DNA helicase mph1 OS=Neosartor...  33.9    7.2   
sp|Q19546|WRN_CAEEL ATP-dependent helicase wrn-1 OS=Caenorhabditi...  33.9    7.2   
sp|Q9CK01|RAPA_PASMU RNA polymerase-associated protein RapA OS=Pa...  33.9    7.4   
sp|Q4WRW0|SSH4_ASPFU Protein ssh4 OS=Aspergillus fumigatus (strai...  33.5    7.6   
sp|A8XT88|FBSP1_CAEBR F-box/SPRY domain-containing protein 1 OS=C...  33.5    7.7   
sp|Q2T9X3|SPRY7_BOVIN SPRY domain-containing protein 7 OS=Bos tau...  32.7    8.0   
sp|F4IDQ6|NIH_ARATH DExH-box ATP-dependent RNA helicase DExH2 OS=...  33.9    8.1   
sp|Q9HE09|MFH2_SCHPO Putative ATP-dependent DNA helicase fml2 OS=...  33.5    8.7   
sp|Q1DY43|MPH1_COCIM ATP-dependent DNA helicase MPH1 OS=Coccidioi...  33.5    8.9   
sp|P57381|MFD_BUCAI Transcription-repair-coupling factor OS=Buchn...  33.5    9.6   
sp|C0Q5F4|RAPA_SALPC RNA polymerase-associated protein RapA OS=Sa...  33.5    9.9   


>sp|Q92499|DDX1_HUMAN ATP-dependent RNA helicase DDX1 OS=Homo 
sapiens OX=9606 GN=DDX1 PE=1 SV=2
Length=740

 Score = 1542 bits (3993),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 740/740 (100%), Positives = 740/740 (100%), Gaps = 0/740 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
Sbjct  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120
            IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
Sbjct  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120

Query  121  GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD  180
            GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
Sbjct  121  GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD  180

Query  181  NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF  240
            NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF
Sbjct  181  NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF  240

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE  300
            NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE
Sbjct  241  NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE  300

Query  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN  360
            QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN
Sbjct  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN  360

Query  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
            LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
Sbjct  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420

Query  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480
            KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN
Sbjct  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480

Query  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540
            SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF
Sbjct  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540

Query  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600
            SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
Sbjct  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600

Query  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660
            HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS
Sbjct  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660

Query  661  EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEK  720
            EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEK
Sbjct  661  EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEK  720

Query  721  EAQTSFLHLGYLPNQLFRTF  740
            EAQTSFLHLGYLPNQLFRTF
Sbjct  721  EAQTSFLHLGYLPNQLFRTF  740


>sp|Q4R7L5|DDX1_MACFA ATP-dependent RNA helicase DDX1 OS=Macaca 
fascicularis OX=9541 GN=DDX1 PE=2 SV=1
Length=740

 Score = 1538 bits (3981),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 737/740 (99%), Positives = 740/740 (100%), Gaps = 0/740 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
Sbjct  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120
            IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
Sbjct  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120

Query  121  GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD  180
            GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
Sbjct  121  GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD  180

Query  181  NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF  240
            NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF
Sbjct  181  NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF  240

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE  300
            NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE
Sbjct  241  NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE  300

Query  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN  360
            QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN
Sbjct  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN  360

Query  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
            LSQVRFLVLDEADGLL+QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
Sbjct  361  LSQVRFLVLDEADGLLTQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420

Query  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480
            KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK+HIRTDDVHAKDNTRPGAN
Sbjct  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKNHIRTDDVHAKDNTRPGAN  480

Query  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540
            SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF+QQGGGPDKKGHQF
Sbjct  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPDKKGHQF  540

Query  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600
            SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
Sbjct  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600

Query  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660
            HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS
Sbjct  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660

Query  661  EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEK  720
            EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEK
Sbjct  661  EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEK  720

Query  721  EAQTSFLHLGYLPNQLFRTF  740
            EAQTSFLHLGYLPNQLFRTF
Sbjct  721  EAQTSFLHLGYLPNQLFRTF  740


>sp|Q5NVJ8|DDX1_PONAB ATP-dependent RNA helicase DDX1 OS=Pongo 
abelii OX=9601 GN=DDX1 PE=2 SV=1
Length=740

 Score = 1537 bits (3979),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 738/739 (99%), Positives = 738/739 (99%), Gaps = 0/739 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
Sbjct  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120
            IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
Sbjct  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120

Query  121  GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD  180
            GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
Sbjct  121  GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD  180

Query  181  NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF  240
            NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF
Sbjct  181  NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF  240

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE  300
            NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE
Sbjct  241  NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE  300

Query  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN  360
            QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN
Sbjct  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN  360

Query  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
            LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
Sbjct  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420

Query  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480
            KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN
Sbjct  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480

Query  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540
            SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF
Sbjct  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540

Query  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600
            SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
Sbjct  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600

Query  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660
            HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS
Sbjct  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660

Query  661  EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEK  720
            EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQ LAALEK
Sbjct  661  EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQGLAALEK  720

Query  721  EAQTSFLHLGYLPNQLFRT  739
            EAQTSFLHLGYLPNQLFRT
Sbjct  721  EAQTSFLHLGYLPNQLFRT  739


>sp|Q641Y8|DDX1_RAT ATP-dependent RNA helicase DDX1 OS=Rattus 
norvegicus OX=10116 GN=Ddx1 PE=1 SV=1
Length=740

 Score = 1518 bits (3931),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 723/740 (98%), Positives = 737/740 (99%), Gaps = 0/740 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
Sbjct  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120
            IQIVYETLKDQQEGKKGK TIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
Sbjct  61   IQIVYETLKDQQEGKKGKATIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120

Query  121  GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD  180
            GCRAT+GL++GKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
Sbjct  121  GCRATRGLLRGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD  180

Query  181  NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF  240
            NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIP H+KNQALFPACVLKNAELKF
Sbjct  181  NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPAHIKNQALFPACVLKNAELKF  240

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE  300
            NFGEEEFKFPPKDGFVALSKAPD Y+VKSQH+GNAQV+QTKFLPNAPKALIVEPSRELAE
Sbjct  241  NFGEEEFKFPPKDGFVALSKAPDSYVVKSQHTGNAQVSQTKFLPNAPKALIVEPSRELAE  300

Query  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN  360
            QTLNN+KQFKKYIDNPKLRELLIIGGVAARDQLSVL+NGVDIVVGTPGRLDDLVSTGKLN
Sbjct  301  QTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLDNGVDIVVGTPGRLDDLVSTGKLN  360

Query  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
            LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ+TSDGKRLQVIVCSATLHSFDVKKLSE
Sbjct  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQITSDGKRLQVIVCSATLHSFDVKKLSE  420

Query  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480
            KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK+HIRTDDVHAKDNTRPGAN
Sbjct  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKNHIRTDDVHAKDNTRPGAN  480

Query  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540
            SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF+QQGGGPDKKGHQF
Sbjct  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPDKKGHQF  540

Query  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600
            SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
Sbjct  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600

Query  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660
            HRIGRVGRAERMGLAISLVATEKEKVWYHVCS+RGKGCYNTRLKEDGGCTIWYNEMQLLS
Sbjct  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSNRGKGCYNTRLKEDGGCTIWYNEMQLLS  660

Query  661  EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEK  720
            EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGG+YKGHVDILAPTVQELAALEK
Sbjct  661  EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGNYKGHVDILAPTVQELAALEK  720

Query  721  EAQTSFLHLGYLPNQLFRTF  740
            EAQTSFLHLGYLPNQLFRTF
Sbjct  721  EAQTSFLHLGYLPNQLFRTF  740


>sp|Q91VR5|DDX1_MOUSE ATP-dependent RNA helicase DDX1 OS=Mus musculus 
OX=10090 GN=Ddx1 PE=1 SV=1
Length=740

 Score = 1516 bits (3925),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 722/740 (98%), Positives = 736/740 (99%), Gaps = 0/740 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
Sbjct  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120
            IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
Sbjct  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120

Query  121  GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD  180
            GCR T+GL+KGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
Sbjct  121  GCRGTRGLLKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD  180

Query  181  NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF  240
            NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIP H+KNQALFPACVLKNAELKF
Sbjct  181  NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPAHIKNQALFPACVLKNAELKF  240

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE  300
            NFGEEEFKFPPKDGFVALSKAPD YIVKSQH+GNAQV+QTKFLPNAPKALIVEPSRELAE
Sbjct  241  NFGEEEFKFPPKDGFVALSKAPDNYIVKSQHTGNAQVSQTKFLPNAPKALIVEPSRELAE  300

Query  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN  360
            QTLNN+KQFKKYIDNPKLRELLIIGGVAARDQLSVL+NGVDIVVGTPGRLDDLVSTGKLN
Sbjct  301  QTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLDNGVDIVVGTPGRLDDLVSTGKLN  360

Query  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
            LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ+T DGKRLQVIVCSATLHSFDVKKLSE
Sbjct  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQITCDGKRLQVIVCSATLHSFDVKKLSE  420

Query  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480
            KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTD+LWERLGK+HIRTDDVHAKDNTRPGAN
Sbjct  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDKLWERLGKNHIRTDDVHAKDNTRPGAN  480

Query  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540
            SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF+QQGGGPDKKGHQF
Sbjct  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPDKKGHQF  540

Query  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600
            SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
Sbjct  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600

Query  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660
            HRIGRVGRAERMGLAISLVATEKEKVWYHVCS+RGKGCYNTRLKEDGGCTIWYNEMQLLS
Sbjct  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSNRGKGCYNTRLKEDGGCTIWYNEMQLLS  660

Query  661  EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEK  720
            EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGG+YKGHVD+LAPTVQELAALEK
Sbjct  661  EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGNYKGHVDVLAPTVQELAALEK  720

Query  721  EAQTSFLHLGYLPNQLFRTF  740
            EAQTSFLHLGYLPNQLFRTF
Sbjct  721  EAQTSFLHLGYLPNQLFRTF  740


>sp|Q0IIK5|DDX1_BOVIN ATP-dependent RNA helicase DDX1 OS=Bos taurus 
OX=9913 GN=DDX1 PE=2 SV=1
Length=740

 Score = 1513 bits (3918),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 720/740 (97%), Positives = 734/740 (99%), Gaps = 0/740 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
Sbjct  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120
            IQIVYETLKDQQEGKKGK TIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
Sbjct  61   IQIVYETLKDQQEGKKGKATIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120

Query  121  GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD  180
            GCRATKGL KGKHYYEVSCHDQGLCRVGWS+MQASLDLGTDKFGFGFGGTGKKSHNKQFD
Sbjct  121  GCRATKGLTKGKHYYEVSCHDQGLCRVGWSSMQASLDLGTDKFGFGFGGTGKKSHNKQFD  180

Query  181  NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF  240
            NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF
Sbjct  181  NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF  240

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE  300
            NFGEEEFKFPPKDGFVALSKAP+ ++VKSQH+G+AQV QTKFLPNAPKALIVEPSRELAE
Sbjct  241  NFGEEEFKFPPKDGFVALSKAPESFVVKSQHTGSAQVAQTKFLPNAPKALIVEPSRELAE  300

Query  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN  360
            QTLNN+KQFKKYIDNPKLRELLIIGGVAARDQLSVL+NGVDIVVGTPGRLDDLVSTGKLN
Sbjct  301  QTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLDNGVDIVVGTPGRLDDLVSTGKLN  360

Query  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
            LSQVRFLVLDEADGLLSQGYSDFINR+HNQIPQ+TSDGKRLQVIVCSATLHSFDVKKLSE
Sbjct  361  LSQVRFLVLDEADGLLSQGYSDFINRIHNQIPQITSDGKRLQVIVCSATLHSFDVKKLSE  420

Query  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480
            KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD+VHAKDNTRPGAN
Sbjct  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDEVHAKDNTRPGAN  480

Query  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540
            SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF+QQGGGPDKKGHQF
Sbjct  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPDKKGHQF  540

Query  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600
            SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
Sbjct  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600

Query  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660
            HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS
Sbjct  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660

Query  661  EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEK  720
            EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKR  GGG+YKGHVD+LAPTVQELAALEK
Sbjct  661  EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRTLGGGNYKGHVDVLAPTVQELAALEK  720

Query  721  EAQTSFLHLGYLPNQLFRTF  740
            EAQTSFLHLGYLPNQLFRTF
Sbjct  721  EAQTSFLHLGYLPNQLFRTF  740


>sp|Q90WU3|DDX1_CHICK ATP-dependent RNA helicase DDX1 OS=Gallus 
gallus OX=9031 GN=DDX1 PE=1 SV=1
Length=740

 Score = 1417 bits (3669),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 690/740 (93%), Positives = 718/740 (97%), Gaps = 0/740 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
Sbjct  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120
            IQIVYETLKDQ EGKKGK TIKTG +VLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
Sbjct  61   IQIVYETLKDQMEGKKGKATIKTGGAVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120

Query  121  GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD  180
            GCRAT+G+ KGK+YYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
Sbjct  121  GCRATRGVTKGKYYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD  180

Query  181  NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF  240
            +YGEEFTMHDTIGCYLDIDKG +KFSKNGKDLGLAFE PPH++NQALF ACVLKNAELKF
Sbjct  181  SYGEEFTMHDTIGCYLDIDKGQIKFSKNGKDLGLAFEFPPHIRNQALFAACVLKNAELKF  240

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE  300
            NFGEE+FKFPPKDG++ L KAPDG +VKSQH+GNAQV QT+ LPNAPKALIVEPSRELAE
Sbjct  241  NFGEEDFKFPPKDGYIGLCKAPDGNVVKSQHTGNAQVVQTQNLPNAPKALIVEPSRELAE  300

Query  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN  360
            QTLNN+KQFKKYIDNPKLRELLIIGGVAARDQLSVLE GVDIVVGTPGRLDDLVSTGKLN
Sbjct  301  QTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLEQGVDIVVGTPGRLDDLVSTGKLN  360

Query  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
            LSQVRFLVLDEADGLL QGYSDFINR+H+QIPQ+TSDGKRLQVIVCSATLHSFDVKKLSE
Sbjct  361  LSQVRFLVLDEADGLLLQGYSDFINRIHSQIPQITSDGKRLQVIVCSATLHSFDVKKLSE  420

Query  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480
            KIMHFPTWVDLKGEDSVP+TVHHVVV VNPKTD+LWERLGK+HIRTD+VHAKDNT PGAN
Sbjct  421  KIMHFPTWVDLKGEDSVPETVHHVVVIVNPKTDKLWERLGKNHIRTDEVHAKDNTLPGAN  480

Query  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540
            +PEMWSEAIKILKGEY VRAIKEHKMDQAIIFCRTKIDCDN+EQYFIQQGGGPD+KGHQF
Sbjct  481  TPEMWSEAIKILKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDRKGHQF  540

Query  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600
            SCVCLHGDRKP ERKQNLERFK+GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
Sbjct  541  SCVCLHGDRKPQERKQNLERFKRGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600

Query  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660
            HRIGRVGRAERMGLAISLVA EKEKVWYHVCSSRGKGCYNTRLKE+GGCTIWYNEMQLL 
Sbjct  601  HRIGRVGRAERMGLAISLVAKEKEKVWYHVCSSRGKGCYNTRLKEEGGCTIWYNEMQLLG  660

Query  661  EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEK  720
            EIEEHLNCTISQVEPDIKVPVD+FDGKVTYGQKRA GGG YKGHVDILAPTVQELAALEK
Sbjct  661  EIEEHLNCTISQVEPDIKVPVDDFDGKVTYGQKRALGGGLYKGHVDILAPTVQELAALEK  720

Query  721  EAQTSFLHLGYLPNQLFRTF  740
            EAQTSFLHLGYLPNQLFRTF
Sbjct  721  EAQTSFLHLGYLPNQLFRTF  740


>sp|Q5XH91|DDX1_XENTR ATP-dependent RNA helicase DDX1 OS=Xenopus 
tropicalis OX=8364 GN=ddx1 PE=2 SV=1
Length=740

 Score = 1359 bits (3517),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 668/740 (90%), Positives = 713/740 (96%), Gaps = 0/740 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            MAAFSEMGVM EIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
Sbjct  1    MAAFSEMGVMAEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120
            IQIVYETLKDQQEGKKGKT++KTG++VLNKWQMNPYDRGS+FAIGSDGLCCQSRE+KEWH
Sbjct  61   IQIVYETLKDQQEGKKGKTSVKTGSTVLNKWQMNPYDRGSSFAIGSDGLCCQSREIKEWH  120

Query  121  GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD  180
            GCR+T+G+ KGK+YYEVSCHDQGLCRVGWST+QASLDLGTDKFGFGFGGTGKKSHNKQFD
Sbjct  121  GCRSTRGVNKGKYYYEVSCHDQGLCRVGWSTLQASLDLGTDKFGFGFGGTGKKSHNKQFD  180

Query  181  NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF  240
            NYGEEFTMHDTIGCY+DID G VK+SKNGKDLGLAF+IP H+KNQA+F +CVLKNAELKF
Sbjct  181  NYGEEFTMHDTIGCYIDIDNGTVKYSKNGKDLGLAFQIPAHLKNQAVFASCVLKNAELKF  240

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE  300
            NFGEE+FKFPPKDGFVALSKAPDG++VKSQ++G+AQV+Q K LPNAPKALI+EPSRELAE
Sbjct  241  NFGEEDFKFPPKDGFVALSKAPDGHVVKSQNTGSAQVSQAKNLPNAPKALIIEPSRELAE  300

Query  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN  360
            QTLNN+KQFKKY+D+PKLRELLIIGGVAA++QL++LENGVDIVVGTPGR+DDL+STGKLN
Sbjct  301  QTLNNVKQFKKYVDSPKLRELLIIGGVAAKEQLTLLENGVDIVVGTPGRIDDLISTGKLN  360

Query  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
            LSQVRFLVLDEADGLLSQGYSDFINR+H QIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
Sbjct  361  LSQVRFLVLDEADGLLSQGYSDFINRIHGQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420

Query  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480
            KIMHFPTWVDLKGEDSVP+TVHHVVVPVNPK D+ WERLGK+HIRTD VH KDNTRPG N
Sbjct  421  KIMHFPTWVDLKGEDSVPETVHHVVVPVNPKKDKQWERLGKNHIRTDGVHDKDNTRPGGN  480

Query  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540
            S EMWSEAIK+LKGEY VRAIKEHKMDQAIIFCRTK+DCDN+EQYFIQQGGGPDKKGHQF
Sbjct  481  SAEMWSEAIKVLKGEYTVRAIKEHKMDQAIIFCRTKLDCDNMEQYFIQQGGGPDKKGHQF  540

Query  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600
            SCVCLH DRKP ERK NLERFKK +VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
Sbjct  541  SCVCLHSDRKPQERKHNLERFKKCEVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600

Query  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660
            HRIGRVGRAERMGLAISLVA EKEKVWYHVCSSRGKGC+NTRLKEDGGCTIWYNE QLLS
Sbjct  601  HRIGRVGRAERMGLAISLVAAEKEKVWYHVCSSRGKGCHNTRLKEDGGCTIWYNETQLLS  660

Query  661  EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEK  720
            EIEEHL CTISQVEPDIKVP+DEFDGKV YGQ+RA GGG YKGHVDILAPTVQELAALEK
Sbjct  661  EIEEHLTCTISQVEPDIKVPLDEFDGKVVYGQRRATGGGLYKGHVDILAPTVQELAALEK  720

Query  721  EAQTSFLHLGYLPNQLFRTF  740
            EAQTSFLHLGYL NQLFRTF
Sbjct  721  EAQTSFLHLGYLSNQLFRTF  740


>sp|A2VD92|DDX1_XENLA ATP-dependent RNA helicase DDX1 OS=Xenopus 
laevis OX=8355 GN=ddx1 PE=2 SV=1
Length=740

 Score = 1352 bits (3499),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 664/740 (90%), Positives = 711/740 (96%), Gaps = 0/740 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
Sbjct  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120
            IQIVYETLKDQQEGKKGK ++KTG++VLNKWQMNPYDRGSAFAIGSDGLCCQSRE+KEWH
Sbjct  61   IQIVYETLKDQQEGKKGKASVKTGSTVLNKWQMNPYDRGSAFAIGSDGLCCQSREIKEWH  120

Query  121  GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD  180
            GCR+T+G+ KGK+YYEVSCHDQGLCRVGWST+ ASLDLGTDKFGFGFGGTGKKSHNKQFD
Sbjct  121  GCRSTRGVNKGKYYYEVSCHDQGLCRVGWSTLSASLDLGTDKFGFGFGGTGKKSHNKQFD  180

Query  181  NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF  240
            NYGEEFTMHDTIGCYLDID   VKFSKNGKDLGLAF+IP HMKNQA F +CVLKNAELKF
Sbjct  181  NYGEEFTMHDTIGCYLDIDNSIVKFSKNGKDLGLAFQIPSHMKNQAFFTSCVLKNAELKF  240

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE  300
            NFGEE+FKFPPKDGFVALSKAPDG++VKSQ++G+AQV+QTK LPNAPKALI+EPSRELAE
Sbjct  241  NFGEEDFKFPPKDGFVALSKAPDGHVVKSQNTGSAQVSQTKSLPNAPKALIIEPSRELAE  300

Query  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN  360
            QTLNN+KQFKKY+DNPKLRELLIIGGVAA++QL++LENGVDIVVGTPGR+DDL+STGKL+
Sbjct  301  QTLNNVKQFKKYVDNPKLRELLIIGGVAAKEQLTILENGVDIVVGTPGRIDDLISTGKLS  360

Query  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
            LSQVRFLVLDEADGLLSQGYSDFINR++ QIPQ+TSDGKRLQVIVCSATLHSFDVKKLSE
Sbjct  361  LSQVRFLVLDEADGLLSQGYSDFINRIYGQIPQITSDGKRLQVIVCSATLHSFDVKKLSE  420

Query  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480
            KIMHFPTWVDLKGEDSVP+TVHHVVVPVNPK D+ WE+L K+HIRTD VH KDNTRPG N
Sbjct  421  KIMHFPTWVDLKGEDSVPETVHHVVVPVNPKKDKQWEKLAKNHIRTDGVHDKDNTRPGGN  480

Query  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540
            S E+WSEAIK+LKGEY VRAIKEHKMDQAIIFCRTK+DCDN+EQYFIQQGGGPDKKGHQF
Sbjct  481  SAEVWSEAIKVLKGEYIVRAIKEHKMDQAIIFCRTKLDCDNMEQYFIQQGGGPDKKGHQF  540

Query  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600
            SCVCLH DRKP ERK NLERFKK +VRFLICTDVAARGIDI GVPYVINVTLPDEKQNYV
Sbjct  541  SCVCLHSDRKPPERKHNLERFKKCEVRFLICTDVAARGIDIRGVPYVINVTLPDEKQNYV  600

Query  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660
            HRIGRVGRAERMGLAISLVA+EKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS
Sbjct  601  HRIGRVGRAERMGLAISLVASEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660

Query  661  EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEK  720
            EIEEHL CTISQVEPDIKVP+D+FDGKV YGQ+RA GGG YKGHVDILAPTVQELA+LEK
Sbjct  661  EIEEHLTCTISQVEPDIKVPLDDFDGKVVYGQRRATGGGLYKGHVDILAPTVQELASLEK  720

Query  721  EAQTSFLHLGYLPNQLFRTF  740
            EAQTSFLHLGYL NQLFR+F
Sbjct  721  EAQTSFLHLGYLSNQLFRSF  740


>sp|Q9VNV3|DDX1_DROME ATP-dependent RNA helicase Ddx1 OS=Drosophila 
melanogaster OX=7227 GN=Ddx1 PE=2 SV=1
Length=727

 Score = 876 bits (2264),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 433/731 (59%), Positives = 552/731 (76%), Gaps = 13/731 (2%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M AF E GV+PE+  A +E+DW LPTD+QAE+IPLILGGGDVLMAAETGSGKTGAF +P+
Sbjct  1    MTAFEEFGVLPELGMATDELDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120
            +QIV+ETL+D +EGK            +  W M+ +DRG+A A+  DGL CQSRE KEWH
Sbjct  61   LQIVWETLRDLEEGKA--GKGGAIGGAVTPWTMSFFDRGNALAVTPDGLRCQSREFKEWH  118

Query  121  GCRATKGLM-KGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQF  179
            GCRAT G+  KGK Y+E +  D+GLCRVGWST QA+LDLGT + GFGFGGTGKKS+N+QF
Sbjct  119  GCRATTGVRGKGKFYFEATVTDEGLCRVGWSTQQANLDLGTCRMGFGFGGTGKKSNNRQF  178

Query  180  DNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELK  239
            D+YGE F   D IGC LD+    V F+KNG++LG+AF +P ++  +  +PA VLKNAE++
Sbjct  179  DDYGEAFGKADVIGCLLDLKNQEVSFTKNGQNLGVAFRLPDNLAKETFYPAVVLKNAEMQ  238

Query  240  FNFGEEEFKFPPKDGFVALSKA-PDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSREL  298
            FNFG+ +FK+ P +GFV   +A P+           A     K  PNAP+A+I+EPSREL
Sbjct  239  FNFGKTDFKYAPGNGFVGACQAGPEHSKANPITGPAAGAPSAKPAPNAPQAIIMEPSREL  298

Query  299  AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGK  358
            AEQT N I++FK ++ NP++R LL+IGGV   +Q + L  G  IVVGTPGRL++++++G 
Sbjct  299  AEQTYNQIEKFKYHLSNPEVRSLLLIGGVRLEEQKAQLMQGTHIVVGTPGRLEEMINSGL  358

Query  359  LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKL  418
            + L+  RF VLDEAD LL QGY++ I+R+H QIP++TSDG+RLQ++VCSATLH+F+VKK+
Sbjct  359  VLLTHCRFFVLDEADALLKQGYTELIDRLHKQIPKITSDGRRLQMVVCSATLHAFEVKKM  418

Query  419  SEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPG  478
            +E++MHFPTWVDLKGED+VP+TVHHVV  V+P+ D  W+ L +  I TD VH +DN  PG
Sbjct  419  AERLMHFPTWVDLKGEDAVPETVHHVVCLVDPQMDTTWQSL-RQPIGTDGVHDRDNVHPG  477

Query  479  ANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGH  538
             +S E  S+A+K+LKGEY V AI +H MD+AIIFCRTK DCDNLE++  Q+G      G 
Sbjct  478  NHSKETLSQAVKLLKGEYCVHAIDKHNMDRAIIFCRTKQDCDNLERFLRQRG------GK  531

Query  539  QFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQN  598
             +SCVCLHGDRKP ERK+NLE FK+  V+FLICTDVAARG+DI G+P++INVTLPD+K N
Sbjct  532  HYSCVCLHGDRKPQERKENLEMFKRQQVKFLICTDVAARGLDITGLPFMINVTLPDDKTN  591

Query  599  YVHRIGRVGRAERMGLAISLVATEKEKVWYH--VCSSRGKGCYNTRLKEDGGCTIWYNEM  656
            YVHRIGRVGRAERMGLAISLVAT  EKVWYH   C SRG+ C NT L E  GC IWYNE 
Sbjct  592  YVHRIGRVGRAERMGLAISLVATVPEKVWYHGEWCKSRGRSCNNTNLTEVRGCCIWYNEP  651

Query  657  QLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELA  716
             LL+E+E+HLN TI QV+  + VPV++FDGKV YGQK    G  Y+ HV+ L PTV++L 
Sbjct  652  NLLAEVEDHLNITIQQVDKTMDVPVNDFDGKVVYGQKNLRTGSGYEDHVEQLVPTVRKLT  711

Query  717  ALEKEAQTSFL  727
             LE ++Q+ FL
Sbjct  712  ELELQSQSLFL  722


>sp|Q55CP6|DDX1_DICDI Probable ATP-dependent RNA helicase ddx1 
OS=Dictyostelium discoideum OX=44689 GN=ddx1 PE=3 SV=1
Length=765

 Score = 610 bits (1572),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 346/776 (45%), Positives = 480/776 (62%), Gaps = 66/776 (9%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M+AF ++GV+PEI +A+EE+DWLLPT IQ E+IPLILGGGDVL AAETGSGKTGAF++P+
Sbjct  1    MSAFEDLGVLPEIIKAIEELDWLLPTPIQTEAIPLILGGGDVLAAAETGSGKTGAFALPI  60

Query  61   IQIVYETLKDQQE----------GKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLC  110
            +QI YETL  + E          G+ G +    G    +  +++  DR    A+  DGL 
Sbjct  61   LQITYETLNKKAEIPIIAPTNTSGEDGTSGGGGGGGGGDTIELDQIDRDKNMAV--DGLI  118

Query  111  CQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGT  170
            CQSR   +W G +ATKG+  GK YYE    D+GLCR+G++  ++S ++GTDKF +G+GGT
Sbjct  119  CQSRS-SDWCGIKATKGISSGKFYYESIVRDEGLCRIGFALKKSSRNIGTDKFSWGYGGT  177

Query  171  GKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPA  230
            GKKSH  +F +YG+ F  +D IGCY++ D+  + F+KNG+D G AF    + K    +PA
Sbjct  178  GKKSHESKFIDYGKPFGNNDVIGCYINFDEEIIGFTKNGQDFGEAFTF--NSKAGIFYPA  235

Query  231  CVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSG-----------------  273
             VLKNAE++FNFG +  K   K G+  +++A    ++  Q S                  
Sbjct  236  LVLKNAEMEFNFGSKPMKHDLK-GYKPINQAE--LLIDQQTSTQIDNSKNNNNNNNKKGS  292

Query  274  --------------NAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLR  319
                          N +    K  P    +LI+EP+RELA+Q  + I  F KY+D+PK++
Sbjct  293  GNNKKNKGKDDDKMNDEDNNNK-QPRKTLSLIIEPTRELADQAYSAILNFSKYLDSPKIQ  351

Query  320  ELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQG  379
              L IGG  +    + +E   DI++GTPGRL+ LV  G ++LS ++F VLDEAD L+   
Sbjct  352  VSLCIGGEKSNGGRNKIEG--DIIIGTPGRLESLVKEGSIDLSSIKFFVLDEADQLIDDN  409

Query  380  YSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPD  439
             +  +N ++N++P     G+ LQV+  SATLHS  V K  E+I   PTWVDLKG D +PD
Sbjct  410  LA-IVNFIYNKLPI----GQNLQVLFFSATLHSTKVIKFCEQITKNPTWVDLKGRDFIPD  464

Query  440  TVHHVVVPVNP-KTDRLWERLGKS-HIRTDDVHAKDNTRPGA-NSPEMWSEAIKILKGEY  496
             + H  V  +P K + LW        IRTD VHA D  + G    PE  SEAIK+LK + 
Sbjct  465  LITHAYVKADPIKFESLWRNSENPLRIRTDGVHASDVQQFGKLKEPEQKSEAIKLLKAQL  524

Query  497  AVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKG--HQFSCVCLHG-DRKPHE  553
             ++ I+  KMDQAIIF RT++DCD++ Q F++  GG +  G   +FS   LHG D     
Sbjct  525  LLKCIQSFKMDQAIIFARTRLDCDHIHQ-FLKDAGGGNTSGLEGEFSSTVLHGGDNISRA  583

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
            RK NLE+F+ GDVRFLICTDVAARGIDI G+PY+IN TLP+  ++Y+HR+GRVGR++R+G
Sbjct  584  RKDNLEKFRNGDVRFLICTDVAARGIDIRGLPYMINYTLPESFEDYIHRVGRVGRSDRIG  643

Query  614  LAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQV  673
            LAISLVA E+EKVWYH C  +GKGC+NT+L E+GGC IWY+E QL + I+E++     ++
Sbjct  644  LAISLVAYEQEKVWYHTCRDKGKGCHNTKLTENGGCCIWYDEPQLFTAIQENIGPI--EL  701

Query  674  EPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKEAQTSFLHL  729
            + D ++P D          K       YK H + L   V +L+ LE+  Q  +L L
Sbjct  702  DSDFQLPKDMKQLNFGGSTKLTGASADYKPHTEELRSRVLQLSQLEETIQIDYLTL  757


>sp|Q24731|DDX1_DROVI ATP-dependent RNA helicase Ddx1 (Fragment) 
OS=Drosophila virilis OX=7244 GN=Ddx1 PE=3 SV=1
Length=400

 Score = 447 bits (1149),  Expect = 2e-150, Method: Compositional matrix adjust.
 Identities = 224/378 (59%), Positives = 275/378 (73%), Gaps = 37/378 (10%)

Query  370  DEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWV  429
            DEAD LL QGY+D I R+H QIP++TSDG RLQ+IVCSATLH+F+VKK++E++MHFPTW 
Sbjct  2    DEADRLLKQGYTDLIERLHKQIPKITSDGCRLQMIVCSATLHAFEVKKMAERLMHFPTWG  61

Query  430  DLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAI  489
            DLKGED+VP+TVHHVV  V+P TD  W++L +  I TD VH  DN  P   SPE +S+A+
Sbjct  62   DLKGEDAVPETVHHVVCMVDPHTDSSWQQL-RQPIHTDGVHDHDNVHPTNQSPETFSQAV  120

Query  490  KILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDR  549
            K+LKGEY +RAI +HKMD+AIIFCRTK DCDNLEQ+  Q+G      G +FSCVCLHGDR
Sbjct  121  KLLKGEYCIRAIDQHKMDRAIIFCRTKQDCDNLEQHLSQRG------GQRFSCVCLHGDR  174

Query  550  KPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY------------------VINVT  591
            KP ERKQNLE FK+ +V+FLICTDVAARG+DI G+P+                  VIN+T
Sbjct  175  KPQERKQNLEMFKRQEVKFLICTDVAARGLDITGLPFSKDLKYLSENTLNFPNLAVINIT  234

Query  592  LPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH--VCSSRGKGCYNTRLKEDGGC  649
            LPD+K NYVHRIGRVGR E MGLAISLV+T  EKVWYH   C +RG+          G C
Sbjct  235  LPDDKSNYVHRIGRVGRPESMGLAISLVSTVPEKVWYHGEWCKTRGRS---------GSC  285

Query  650  TIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILA  709
             IWYNE  LL+E+E+HLN TI QV   + VPV++FDGKV YGQK    G  Y+ HV+ L 
Sbjct  286  -IWYNEPNLLAEVEDHLNITIQQVVKSLDVPVNDFDGKVVYGQKNLNMGTGYEDHVEQLG  344

Query  710  PTVQELAALEKEAQTSFL  727
            PTV++   LE ++Q+ FL
Sbjct  345  PTVRKQTDLELQSQSLFL  362


>sp|P25888|RHLE_ECOLI ATP-dependent RNA helicase RhlE OS=Escherichia 
coli (strain K12) OX=83333 GN=rhlE PE=1 SV=3
Length=454

 Score = 180 bits (456),  Expect = 3e-48, Method: Compositional matrix adjust.
 Identities = 117/343 (34%), Positives = 176/343 (51%), Gaps = 59/343 (17%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+RELA Q   N++ + KY++   +R L++ GGV+   Q+  L  GVD++V TP
Sbjct  77   RALILTPTRELAAQIGENVRDYSKYLN---IRSLVVFGGVSINPQMMKLRGGVDVLVATP  133

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GRL DL     + L QV  LVLDEAD +L  G+   I R+  ++P      KR Q ++ S
Sbjct  134  GRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLP-----AKR-QNLLFS  187

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT  S D+K L+EK++H P  +++   ++  D V                        T 
Sbjct  188  ATF-SDDIKALAEKLLHNPLEIEVARRNTASDQV------------------------TQ  222

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
             VH  D  R      E+ S  I   KG +           Q ++F RTK   ++L +   
Sbjct  223  HVHFVDKKR----KRELLSHMIG--KGNW----------QQVLVFTRTKHGANHLAEQLN  266

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
            + G              +HG++    R + L  FK GD+R L+ TD+AARG+DI  +P+V
Sbjct  267  KDG---------IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHV  317

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
            +N  LP+  ++YVHRIGR GRA   G A+SLV  ++ K+   +
Sbjct  318  VNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI  360


 Score = 61.6 bits (148),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 29/81 (36%), Positives = 51/81 (63%), Gaps = 4/81 (5%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +F  +G+ P+I +AV E  +  PT IQ ++IP +L G D++ +A+TG+GKT  F++P++Q
Sbjct  2   SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ  61

Query  63  IVYETLKDQQEGKKGKTTIKT  83
                L  +Q   KG+  ++ 
Sbjct  62  ----HLITRQPHAKGRRPVRA  78


>sp|Q0ILZ4|RH9_ORYSJ DEAD-box ATP-dependent RNA helicase 9 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os12g0611200 PE=2 SV=1
Length=628

 Score = 168 bits (425),  Expect = 8e-43, Method: Compositional matrix adjust.
 Identities = 117/358 (33%), Positives = 182/358 (51%), Gaps = 64/358 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P A+++ P+RELA+Q        +++ D+  +  + + GG     Q+  L  GVD+V+GT
Sbjct  173  PLAIVLAPTRELAKQVE------REFSDSSNVETICVYGGTPISQQIRQLNYGVDVVIGT  226

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGR+ DL+  G LNLS+VRF+VLDEAD +LS G+ + +  + +++P       + Q ++ 
Sbjct  227  PGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVP------PKRQTLMF  280

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT+ ++ +++L++K +  P  +DL GED                  +L E +    I +
Sbjct  281  SATMPTW-IQRLTQKYLKNPVTIDLVGEDD----------------QKLAEGISLYSIAS  323

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH-KMDQAIIFCRTKIDCDNLEQY  525
            +  HAK         P +  E             IKEH K  + I+F +TK D D L   
Sbjct  324  EG-HAK---------PAVLGE------------LIKEHAKGGKCIVFTQTKRDADRLSYT  361

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
                       G  F C  LHGD    +R++ L+ F++G    LI TDVAARG+DI  V 
Sbjct  362  M----------GRSFQCQALHGDITQAQRERTLKGFREGHFNILIATDVAARGLDIPNVD  411

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRL  643
             VI+  LP+  + +VHR GR GRA + G AI + + ++ +    V      GC  T L
Sbjct  412  LVIHFELPNSSELFVHRSGRTGRAGKKGKAIVMHSYQQSRAIRMV--ENDVGCKFTEL  467


>sp|Q19614|SLFL2_CAEEL Schlafen-like protein 2 OS=Caenorhabditis 
elegans OX=6239 GN=tofu-2 PE=1 SV=3
Length=433

 Score = 163 bits (413),  Expect = 1e-42, Method: Compositional matrix adjust.
 Identities = 82/175 (47%), Positives = 110/175 (63%), Gaps = 3/175 (2%)

Query  92   QMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATKGLM-KGKHYYEVSCHDQGLCRVGWS  150
            ++N  D+     I   GL C+S   K W G R T GL   GK+YYEV+   +GLCRVGW+
Sbjct  10   KLNKQDQDLHLEIDETGLACKSEVKKRWLGARGTAGLYGNGKYYYEVTITSKGLCRVGWA  69

Query  151  TMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGK  210
            T+  SL++G     FG+GGTG KS +K+FD+YG  FT++D IGCYLD+D   + +SKNG+
Sbjct  70   TLGGSLNIGKGLDSFGYGGTGMKSTHKKFDDYGLPFTLNDVIGCYLDLDSRTIWWSKNGE  129

Query  211  DLGLAFEIPPHMKNQ--ALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPD  263
                AF I    KN    LFPA + +N+ L  NFG + FKFPP + F A+S AP+
Sbjct  130  QFPAAFSIDVKYKNSNTCLFPAVLCQNSSLSVNFGSQPFKFPPGNQFTAVSDAPN  184


>sp|A0A1D6LAB7|RH3B_MAIZE DEAD-box ATP-dependent RNA helicase 
3B, chloroplastic OS=Zea mays OX=4577 GN=RH3B PE=2 SV=1
Length=743

 Score = 168 bits (425),  Expect = 2e-42, Method: Compositional matrix adjust.
 Identities = 118/396 (30%), Positives = 193/396 (49%), Gaps = 80/396 (20%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+ L++ P+RELA+Q    IK+       PKL  + + GGV+   Q + L  GVD+VVGT
Sbjct  165  PRVLVLAPTRELAKQVEKEIKE-----SAPKLGTVCVYGGVSYNVQQNALSRGVDVVVGT  219

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGR+ DL++ G L L +V++LVLDEAD +L+ G+ + +  +  Q+P     G+  Q ++ 
Sbjct  220  PGRIIDLINGGSLQLGEVQYLVLDEADQMLAVGFEEDVETILQQLPA----GR--QSMLF  273

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKG--EDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            SAT+ S+ VKKLS + ++ P  +DL G  ++ + + +    +P+   + R          
Sbjct  274  SATMPSW-VKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTTTSKR----------  322

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                               + S+ I +    YA       K  + I+F RTK D D +  
Sbjct  323  ------------------TVLSDLITV----YA-------KGGKTIVFTRTKKDADEVSL  353

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
                         +  +   LHGD   H+R++ L  F++G    L+ TDVAARG+DI  V
Sbjct  354  ALT----------NSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV  403

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLK  644
              +I+  LP++ + +VHR GR GRA + G AI +  + +++                 L+
Sbjct  404  DLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTSSQKRTVKS-------------LE  450

Query  645  EDGGCTIWYNEMQLLSEI----EEHLNCTISQVEPD  676
             D GC   +     + E+     EH+  T+  V P+
Sbjct  451  RDVGCNFEFISPPSIEEVLESSAEHVIATLRGVHPE  486


 Score = 35.8 bits (81),  Expect = 1.7, Method: Compositional matrix adjust.
 Identities = 26/79 (33%), Positives = 45/79 (57%), Gaps = 5/79 (6%)

Query  3    AFSEMGVMPEIAQAVEE--MDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            A + +G+  E+   +E+  +  L P  IQ   +   L G D++  A+TG+GKT AF IP+
Sbjct  89   AIARLGLPDELVATLEKRGITHLFP--IQRAVLIPALEGRDLIARAKTGTGKTLAFGIPM  146

Query  61   IQIVYETLKDQQEGKKGKT  79
            I+ + E   D +  ++G+T
Sbjct  147  IKQLIEQ-DDGRITRRGRT  164


>sp|P27639|IF4A_CAEEL Eukaryotic initiation factor 4A OS=Caenorhabditis 
elegans OX=6239 GN=inf-1 PE=2 SV=1
Length=402

 Score = 161 bits (408),  Expect = 3e-42, Method: Compositional matrix adjust.
 Identities = 110/358 (31%), Positives = 173/358 (48%), Gaps = 63/358 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+RELA+Q    +    +Y++   +  L  IGG + RD    LE G+ +VVGTP
Sbjct  99   QALVMAPTRELAQQIQKVMSALGEYLN---VNILPCIGGTSVRDDQRKLEAGIHVVVGTP  155

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D+++   L+ S+++  VLDEAD +LS+G+ D I  +   +PQ       +QV++ S
Sbjct  156  GRVGDMINRNALDTSRIKMFVLDEADEMLSRGFKDQIYEVFRSMPQ------DVQVVLLS  209

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+ S +V  ++ + M  P  + +K ++   + +    + V                   
Sbjct  210  ATMPS-EVLDVTNRFMRNPIRILVKKDELTLEGIRQFYINVQ------------------  250

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                KD           W      L   Y V  +      QA+IFC T+   D L +   
Sbjct  251  ----KDE----------WK--FDCLCDLYNVVNVT-----QAVIFCNTRRKVDTLTEKMT  289

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
            +         +QF+  CLHGD    ER   +  F+ G  R LI TD+ ARGID+  V  V
Sbjct  290  E---------NQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVSLV  340

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            IN  LP  ++NY+HRIGR GR  R G+AI+ V     +    +     +  Y T+++E
Sbjct  341  INYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQLKEI-----ESYYTTQIEE  393


 Score = 38.5 bits (88),  Expect = 0.19, Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 34/60 (57%), Gaps = 0/60 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +F +M +  E+ + +    +  P+ IQ  +I     G DV+  A++G+GKT  FS+ ++Q
Sbjct  30  SFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQ  89


>sp|A0A1D6GDY8|RH3A_MAIZE DEAD-box ATP-dependent RNA helicase 
3A, chloroplastic OS=Zea mays OX=4577 GN=RH3A PE=3 SV=1
Length=745

 Score = 166 bits (421),  Expect = 7e-42, Method: Compositional matrix adjust.
 Identities = 117/396 (30%), Positives = 190/396 (48%), Gaps = 80/396 (20%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+ L++ P+RELA+Q    IK+       PKL  + + GGV+   Q + L  GVD+VVGT
Sbjct  165  PRVLVLAPTRELAKQVEKEIKE-----SAPKLGTVCVYGGVSYNVQQNALSRGVDVVVGT  219

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGR+ DL++ G L L +V++LVLDEAD +L+ G+ + +  +  Q+P         Q ++ 
Sbjct  220  PGRIIDLINGGSLQLGEVQYLVLDEADQMLAVGFEEDVETILQQLP------ADRQSMLF  273

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKG--EDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            SAT+ S+ VKKLS + ++ P  +DL G  ++ + + +    +P+   + R          
Sbjct  274  SATMPSW-VKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLHAIPLTATSKR----------  322

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                               + S+ I +    YA       K  + I+F RTK D D +  
Sbjct  323  ------------------TILSDLITV----YA-------KGGKTIVFTRTKKDADEVSL  353

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
                            +   LHGD   H+R++ L  F++G    L+ TDVAARG+DI  V
Sbjct  354  ALTT----------SIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV  403

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLK  644
              +I+  LP++ + +VHR GR GRA + G AI +  + +++                 L+
Sbjct  404  DLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTSSQKRTVMS-------------LE  450

Query  645  EDGGCTIWYNEMQLLSEI----EEHLNCTISQVEPD  676
             D GC   +     + E+     EH+  T+  V P+
Sbjct  451  RDVGCKFEFISPPSIEEVLESSAEHVIATLRGVHPE  486


 Score = 40.4 bits (93),  Expect = 0.070, Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 5/79 (6%)

Query  3    AFSEMGVMPEIAQAVEE--MDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            A + +G+  E+   +E+  +  L P  IQ   +   LGG D++  A+TG+GKT AF IP+
Sbjct  89   AIARLGLPDELVATLEKRGITHLFP--IQRAVLIPALGGRDLIARAKTGTGKTLAFGIPM  146

Query  61   IQIVYETLKDQQEGKKGKT  79
            I+ + E   D +  ++G+T
Sbjct  147  IKQLMEQ-DDGRSTRRGRT  164


>sp|Q0DM51|RH3_ORYSJ DEAD-box ATP-dependent RNA helicase 3, chloroplastic 
OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0827700 
PE=2 SV=2
Length=758

 Score = 162 bits (409),  Expect = 3e-40, Method: Compositional matrix adjust.
 Identities = 108/354 (31%), Positives = 175/354 (49%), Gaps = 65/354 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+ L++ P+RELA+Q    IK+       PKL  + + GGV+   Q + L  GVD+VVGT
Sbjct  181  PRVLVLAPTRELAKQVEKEIKE-----SAPKLSTVCVYGGVSYNVQQNALSRGVDVVVGT  235

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGR+ DL++ G L L +V++LVLDEAD +L+ G+ + +  +  Q+P         Q ++ 
Sbjct  236  PGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQLP------AERQSMLF  289

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKG--EDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            SAT+  + VKKLS + ++ P  +DL G  ++ + + +    +P+   + R          
Sbjct  290  SATMPGW-VKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKR----------  338

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                               + S+ I +    YA       K  + I+F +TK D D +  
Sbjct  339  ------------------TVLSDLITV----YA-------KGGKTIVFTKTKRDADEVSL  369

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
                         +  +   LHGD   H+R++ L  F++G    L+ TDVAARG+DI  V
Sbjct  370  ALT----------NSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV  419

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGC  638
              +I+  LP++ + +VHR GR GRA + G AI +    + +    +   R  GC
Sbjct  420  DLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSL--ERDVGC  471


 Score = 34.3 bits (77),  Expect = 4.9, Method: Compositional matrix adjust.
 Identities = 24/78 (31%), Positives = 44/78 (56%), Gaps = 5/78 (6%)

Query  3    AFSEMGVMPEIAQAVEE--MDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            A + +G+  ++   +E+  +  L P  IQ   +   L G D++  A+TG+GKT AF IP+
Sbjct  105  AIARLGLPEQLVSTLEKRGITHLFP--IQRAVLIPALDGRDLIARAKTGTGKTLAFGIPM  162

Query  61   IQIVYETLKDQQEGKKGK  78
            I+ + E   D +  ++G+
Sbjct  163  IKQLMEE-DDGRSVRRGR  179


>sp|P9WH05|DEAD_MYCTU ATP-dependent RNA helicase DeaD OS=Mycobacterium 
tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=deaD 
PE=1 SV=1
Length=563

 Score = 159 bits (402),  Expect = 4e-40, Method: Compositional matrix adjust.
 Identities = 102/334 (31%), Positives = 163/334 (49%), Gaps = 60/334 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+AL++ P+RELA Q      ++  Y+   +L  L I GG +   QL+ L  G  +VVGT
Sbjct  82   PQALVLVPTRELALQVAEAFGRYGAYLS--QLNVLPIYGGSSYAVQLAGLRRGAQVVVGT  139

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGR+ D +    L+LS+V FLVLDEAD +L+ G++D + R+ ++ P+        QV + 
Sbjct  140  PGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYK------QVALF  193

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT+    ++KLS K +H P  V  K + +V + +    + V  K D L           
Sbjct  194  SATMPP-AIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDAL-----------  241

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                                            R ++    +  I+F RTK   + + +  
Sbjct  242  -------------------------------TRVLEVEPFEAMIVFVRTKQATEEIAEKL  270

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
              +G         FS   + GD    +R++ +   + GD+  L+ TDVAARG+D+  + +
Sbjct  271  RARG---------FSAAAISGDVPQAQRERTITALRDGDIDILVATDVAARGLDVERISH  321

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            V+N  +P + ++YVHRIGR GRA R G A+  V+
Sbjct  322  VLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVS  355


 Score = 58.5 bits (140),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 47/71 (66%), Gaps = 0/71 (0%)

Query  2   AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
           A F+++ + P + +A+ ++ +  PT IQA +IP ++ G DV+  A+TG+GKT AF+IP++
Sbjct  13  ATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPML  72

Query  62  QIVYETLKDQQ  72
             +  T K  Q
Sbjct  73  SKIDITSKVPQ  83


>sp|P9WH04|DEAD_MYCTO ATP-dependent RNA helicase DeaD OS=Mycobacterium 
tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=deaD 
PE=3 SV=1
Length=563

 Score = 159 bits (402),  Expect = 4e-40, Method: Compositional matrix adjust.
 Identities = 102/334 (31%), Positives = 163/334 (49%), Gaps = 60/334 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+AL++ P+RELA Q      ++  Y+   +L  L I GG +   QL+ L  G  +VVGT
Sbjct  82   PQALVLVPTRELALQVAEAFGRYGAYLS--QLNVLPIYGGSSYAVQLAGLRRGAQVVVGT  139

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGR+ D +    L+LS+V FLVLDEAD +L+ G++D + R+ ++ P+        QV + 
Sbjct  140  PGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYK------QVALF  193

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT+    ++KLS K +H P  V  K + +V + +    + V  K D L           
Sbjct  194  SATMPP-AIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDAL-----------  241

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                                            R ++    +  I+F RTK   + + +  
Sbjct  242  -------------------------------TRVLEVEPFEAMIVFVRTKQATEEIAEKL  270

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
              +G         FS   + GD    +R++ +   + GD+  L+ TDVAARG+D+  + +
Sbjct  271  RARG---------FSAAAISGDVPQAQRERTITALRDGDIDILVATDVAARGLDVERISH  321

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            V+N  +P + ++YVHRIGR GRA R G A+  V+
Sbjct  322  VLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVS  355


 Score = 58.5 bits (140),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 47/71 (66%), Gaps = 0/71 (0%)

Query  2   AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
           A F+++ + P + +A+ ++ +  PT IQA +IP ++ G DV+  A+TG+GKT AF+IP++
Sbjct  13  ATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPML  72

Query  62  QIVYETLKDQQ  72
             +  T K  Q
Sbjct  73  SKIDITSKVPQ  83


>sp|Q81DF9|CSHE_BACCR DEAD-box ATP-dependent RNA helicase CshE 
OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 
/ JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) 
OX=226900 GN=cshE PE=2 SV=1
Length=458

 Score = 155 bits (393),  Expect = 1e-39, Method: Compositional matrix adjust.
 Identities = 112/351 (32%), Positives = 172/351 (49%), Gaps = 64/351 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALIV P+RELA Q    IK  K  +    +  L I GG     QL  L+    IVV TP
Sbjct  75   QALIVAPTRELALQITTEIK--KMLVQREDINVLAIYGGQDVAQQLRKLKGNTHIVVATP  132

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GRL D +    ++LS +  +VLDEAD +L  G+   I  + ++ P     G + Q ++ S
Sbjct  133  GRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETP-----GSK-QTMLFS  186

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+   D+KKL+++ M  P  + ++ E+   DT+   V+                     
Sbjct  187  ATMPK-DIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVI---------------------  224

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ---AIIFCRTKIDCDNLEQ  524
                 D  +P A                  +R + +   DQ   A+IFCRTK+    L  
Sbjct  225  --ETTDRAKPDA------------------LRFVMDR--DQPFLAVIFCRTKVRASKLYD  262

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
                       KG  ++C  LHGD    +R++ ++ F++  +++LI TDVAARG+D+ GV
Sbjct  263  NL---------KGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGV  313

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRG  635
             +V N  +P++ ++Y+HRIGR GRA   GLAI+ VA + EK    +  + G
Sbjct  314  THVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLG  364


 Score = 47.0 bits (110),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 0/59 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           F E+G+       + E      T IQ ++IP+IL G D++  A+TG+GKT AF +P+++
Sbjct  7   FLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE  65


>sp|A6SCT6|DBP3_BOTFB ATP-dependent RNA helicase dbp3 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=dbp3 PE=3 SV=1
Length=592

 Score = 157 bits (397),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 115/340 (34%), Positives = 178/340 (52%), Gaps = 52/340 (15%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+A++V P+RELA Q+   I +  K      L  + + GGV   +Q+  L+   DIVV T
Sbjct  249  PRAVVVSPTRELAMQSYEQIVKLAKA---SGLECVCVYGGVPKDEQIRALKTA-DIVVAT  304

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL+DL++ G  +LS+ R++VLDEAD +L +G+ + I ++ N  P +   GKR Q ++ 
Sbjct  305  PGRLNDLINQGCADLSKARYVVLDEADRMLDKGFEEEIRKIINTTPSL---GKR-QTLMF  360

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTD-RLWERLGKSHIR  465
            +AT     V++L+   M  P                 + +  NP  D R   R+ +   +
Sbjct  361  TATWPE-SVRELAATFMTSPV---------------KIAIGDNPTGDLRANSRIVQ---K  401

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
             + V  +D               +++LK +Y   + K+   D+ ++FC  K +   +E +
Sbjct  402  VEVVEPRDKEY----------RLMQLLK-QYQSGSQKD---DRILVFCLYKKEATRVESF  447

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
              Q+G         F    +HGD    +R ++LE FK G+   L+ TDVAARG+DI  V 
Sbjct  448  IRQKG---------FRVAGIHGDLSQEQRTRSLEAFKSGNTPVLVATDVAARGLDIPAVK  498

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
             VIN T P   ++YVHRIGR GRA + GLAI+L  TE +K
Sbjct  499  LVINCTFPLTVEDYVHRIGRTGRAGKDGLAITLF-TEHDK  537


 Score = 49.7 bits (117),  Expect = 8e-05, Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 31/48 (65%), Gaps = 0/48 (0%)

Query  14   AQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            AQ     D+  PT IQA + P +L G DV+  AETGSGKT AF++P I
Sbjct  198  AQRAPFKDFKAPTPIQAAAWPFLLAGRDVIGVAETGSGKTMAFAVPCI  245


>sp|Q55D61|IF4A_DICDI Eukaryotic initiation factor 4A OS=Dictyostelium 
discoideum OX=44689 GN=tifA PE=3 SV=1
Length=405

 Score = 153 bits (387),  Expect = 3e-39, Method: Compositional matrix adjust.
 Identities = 107/360 (30%), Positives = 171/360 (48%), Gaps = 63/360 (18%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            +P+ LI+ P+RELA+Q         ++++   ++    +GG    D +  LE GV IV G
Sbjct  100  SPQVLILSPTRELAQQIQKVALALSEFMN---IQVHACVGGKNLSDDVKKLETGVHIVSG  156

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGR+ D+++   L    ++ ++LDEAD +LS G+   IN ++  +P  T      Q+++
Sbjct  157  TPGRVLDMITRKSLPTRHIKMMILDEADEMLSLGFQQQINDVYRYLPNGT------QIVL  210

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SATL   DV  ++EK M  P  + LK ++   D +    V V                 
Sbjct  211  VSATLTQ-DVVSMTEKFMTKPVRILLKRDELTLDGIKQFFVSVE----------------  253

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                  K++ + G       S  I                  QA+IFC TK   D L + 
Sbjct  254  ------KEDWKFGTLCDIYDSLTIT-----------------QAVIFCNTKKKVDQLTEQ  290

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
                      +   F+   +HGD    ER++ ++ F+ G+ R LI TD+ ARGID+  V 
Sbjct  291  M---------RDANFTVASMHGDMVQKEREEIIKSFRSGENRVLITTDILARGIDVQQVS  341

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
             VIN  LP +++NY+HRIGR GR  R G+AI+ V     ++   +     +  Y+T++ E
Sbjct  342  LVINYDLPIDRENYIHRIGRSGRFGRKGVAINFVKNSDIRILRDI-----EQFYSTQIDE  396


 Score = 42.4 bits (98),  Expect = 0.015, Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (53%), Gaps = 0/70 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F  MG+  E+ + +    +  P+ IQ  +I  I+ G D +  A++G+GKT  FSI  +Q
Sbjct  33   TFESMGLREELLRGIFNYGFEKPSAIQQRAILPIIKGRDTIAQAQSGTGKTATFSIGALQ  92

Query  63   IVYETLKDQQ  72
             V   ++  Q
Sbjct  93   CVEVNVRSPQ  102


>sp|Q7S5R1|DBP3_NEUCR ATP-dependent RNA helicase dbp-3 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=dbp-3 PE=3 SV=1
Length=614

 Score = 157 bits (396),  Expect = 4e-39, Method: Compositional matrix adjust.
 Identities = 116/348 (33%), Positives = 174/348 (50%), Gaps = 53/348 (15%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL--ENGVDIVV  344
            P+A+IV P+RELA QT   +      +    L  + I GG    +Q ++L   NGVDI+ 
Sbjct  258  PRAVIVSPTRELAMQTHAALSGLASLVG---LSAVCIFGGSDKNEQRNLLYKNNGVDIIT  314

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D +S G ++L+ V F VLDEAD +L +G+S+ I  + +  P      ++ Q +
Sbjct  315  ATPGRLKDFLSEGSISLANVSFAVLDEADRMLDRGFSEDIKLILSGCPP----KEQRQTL  370

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + +AT    D++KL+E  M  P  V          T+ H              R G    
Sbjct  371  MFTATW-PLDIQKLAESYMINPAQV----------TIGHRT------------RAGGDGE  407

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAV-RAIKE-----HKMDQAIIFCRTKID  518
               ++  + N+R      E   E +     E+ +   +KE      K D+ ++FC  K +
Sbjct  408  GNGNIELQANSRI-----EQKVEVVDPRGKEFRLYELLKEAQKGSQKDDRILVFCLYKKE  462

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
               +EQ+  ++G              +HGD +  +R ++LE FK G    L+ TDVAARG
Sbjct  463  AVRVEQFLSRKG---------IKVASIHGDLRQDQRTRSLEAFKSGTTTVLVATDVAARG  513

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
            +DI  V  VINVT P   ++YVHRIGR GRA ++G AI+L  TE +K 
Sbjct  514  LDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKLGKAITLF-TEHDKA  560


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 22/38 (58%), Positives = 27/38 (71%), Gaps = 0/38 (0%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            PT IQ+ S P  L G DV+  AETGSGKT AFS+P ++
Sbjct  202  PTPIQSASWPFSLSGRDVIGIAETGSGKTMAFSLPCVE  239


>sp|Q755N4|DBP2_EREGS ATP-dependent RNA helicase DBP2 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DBP2 PE=3 SV=2
Length=557

 Score = 155 bits (393),  Expect = 5e-39, Method: Compositional matrix adjust.
 Identities = 111/345 (32%), Positives = 168/345 (49%), Gaps = 62/345 (18%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  L++ P+RELA Q      +F +   + ++R   + GGV    Q+  L+ GV+I++
Sbjct  186  DGPVVLVLAPTRELAVQIQKECSKFGR---SSRIRNTCVYGGVPKSQQIRDLQRGVEILI  242

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D++  GK NL +V +LVLDEAD +L  G+   I ++ +QI          Q +
Sbjct  243  ATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQI------RPDRQTL  296

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKG-EDSVPDTVHHVVVPVNP--KTDRLWERLGK  461
            + SAT    +V++L+   +H P  V++   E +   T+  +V  V+   K DRL + L  
Sbjct  297  MWSATWPK-EVQQLARDYLHDPIQVNIGSLELAASHTITQLVEVVSDFDKRDRLVKHL--  353

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
                  ++ +KD                               K  + IIF  TK  CD 
Sbjct  354  ------EIASKD-------------------------------KDSKIIIFASTKRTCDE  376

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            +  Y  Q G         +  + +HGD++  ER   L  F+ G    ++ TDVAARGID+
Sbjct  377  ITSYLRQDG---------WPALAIHGDKQQQERDWVLNEFRTGRSPIMVATDVAARGIDV  427

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
             G+ +VIN  +P   ++YVHRIGR GRA   G AIS   TE  K 
Sbjct  428  KGINFVINYDMPGNIEDYVHRIGRTGRAGATGTAISFF-TEANKT  471


 Score = 41.6 bits (96),  Expect = 0.025, Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (56%), Gaps = 0/61 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E G    + + V+E  +  PT IQ +  P+ L G D++  A TGSGKT ++ +P 
Sbjct  113  IRTFDEAGFPEYVLKEVKEEGFEKPTAIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPG  172

Query  61   I  61
            I
Sbjct  173  I  173


>sp|A7EYW0|DBP3_SCLS1 ATP-dependent RNA helicase dbp3 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=dbp3 PE=3 SV=2
Length=596

 Score = 155 bits (393),  Expect = 8e-39, Method: Compositional matrix adjust.
 Identities = 115/340 (34%), Positives = 178/340 (52%), Gaps = 52/340 (15%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+A++V P+RELA Q+   I +  K      L  + + GGV   +Q+  L+   DIVV T
Sbjct  253  PRAVVVSPTRELAMQSYEQIVKLAKA---SGLECVCVYGGVPKDEQIRALKTA-DIVVAT  308

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL+DL++ G  +LS+ R++VLDEAD +L +G+ + I ++ N  P +   GKR Q ++ 
Sbjct  309  PGRLNDLINQGCADLSKARYVVLDEADRMLDKGFEEEIRKIINTTPSL---GKR-QTLMF  364

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTD-RLWERLGKSHIR  465
            +AT     V++L+   M  P                 + +  NP  D R   R+ +   +
Sbjct  365  TATWPE-SVRELASTFMTSPV---------------KIAIGDNPTGDLRANSRIVQ---K  405

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
             + V  +D               +++LK +Y   + K+   D+ ++FC  K +   +E +
Sbjct  406  VEVVEPRDKE----------YRLMQLLK-QYQSGSQKD---DRILVFCLYKKEATRVEGF  451

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
              Q+G         F    +HGD    +R ++LE FK G+   L+ TDVAARG+DI  V 
Sbjct  452  IRQKG---------FRVAGIHGDLSQEQRTRSLEAFKSGNTPVLVATDVAARGLDIPAVK  502

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
             VIN T P   ++YVHRIGR GRA + GLAI+L  TE +K
Sbjct  503  LVINCTFPLTVEDYVHRIGRTGRAGKDGLAITLF-TEHDK  541


 Score = 52.8 bits (125),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 36/98 (37%), Positives = 49/98 (50%), Gaps = 5/98 (5%)

Query  14   AQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQE  73
            AQ     D+  PT IQA + P +L G DV+  AETGSGKT AF++P ++ +    K+Q  
Sbjct  191  AQRAPFKDFKAPTPIQAAAWPFLLAGRDVIGVAETGSGKTMAFAVPCVRYMSSLPKNQ--  248

Query  74   GKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
              K K       S   +  M  Y++    A  S GL C
Sbjct  249  --KNKGPRAVVVSPTRELAMQSYEQIVKLAKAS-GLEC  283


>sp|Q6CIV2|DBP2_KLULA ATP-dependent RNA helicase DBP2 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP2 PE=3 SV=1
Length=554

 Score = 155 bits (391),  Expect = 1e-38, Method: Compositional matrix adjust.
 Identities = 108/335 (32%), Positives = 162/335 (48%), Gaps = 57/335 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  L++ P+RELA Q     K+  K+  + ++R   + GGV    Q+  L+ GV+I++
Sbjct  185  DGPIVLVLAPTRELAVQIQ---KECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILI  241

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D++  GK NL +V +LVLDEAD +L  G+   I ++ +QI          Q +
Sbjct  242  ATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQI------RPDRQTL  295

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKG-EDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            + SAT    +VK+L+   +H P  V +   E S   T+  +V  +     R  +RL K H
Sbjct  296  MWSATWPK-EVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKR--DRLAK-H  351

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
            + T                                    + +  + IIF  TK  CD + 
Sbjct  352  LET----------------------------------ASQDQDSKIIIFASTKRTCDEIT  377

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             Y   +G         +  + +HGD+  +ER   L  F+ G    ++ TDVAARGID+ G
Sbjct  378  SYLRTEG---------WPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGIDVKG  428

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            + YVIN  +P   ++YVHRIGR GRA   G AIS 
Sbjct  429  INYVINYDMPGNIEDYVHRIGRTGRAGSTGTAISF  463


 Score = 41.2 bits (95),  Expect = 0.034, Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (56%), Gaps = 0/61 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F E G    +   V++  +  PT IQ +  P+ L G D++  A TGSGKT ++ +P 
Sbjct  112  IRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPG  171

Query  61   I  61
            I
Sbjct  172  I  172


>sp|Q814I2|DBPA_BACCR ATP-dependent RNA helicase DbpA OS=Bacillus 
cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 
/ NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) OX=226900 
GN=dbpA PE=2 SV=1
Length=481

 Score = 153 bits (387),  Expect = 1e-38, Method: Compositional matrix adjust.
 Identities = 106/339 (31%), Positives = 167/339 (49%), Gaps = 65/339 (19%)

Query  285  NAPKALIVEPSRELAEQT---LNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVD  341
            N P+AL++ P+RELA Q    + NI +FK+      ++   + G      Q   L+    
Sbjct  71   NKPQALVLTPTRELAVQVKEDITNIGRFKR------IKAAAVYGKSPFARQKLELKQKTH  124

Query  342  IVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL  401
            IVVGTPGR+ D +  G L+L  +++LV+DEAD +L+ G+ D +  + +++P      KR+
Sbjct  125  IVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPT-----KRM  179

Query  402  QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK  461
             ++  SATL   DV+KLS   M+ PT +++K      D + H +  V             
Sbjct  180  TMLF-SATLPE-DVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEV-------------  224

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
                                  +  E + +LK    +        D  IIFCRT+ + D+
Sbjct  225  ----------------------IEDEKLSLLKDVTTI-----ENPDSCIIFCRTQENVDH  257

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            + +           K   + C  +HG     +R + ++ F+KG  R+L+ TDVAARGIDI
Sbjct  258  VYRQL---------KRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDI  308

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
              + +VIN  +P EK++YVHR GR GRA   G AI+ + 
Sbjct  309  DNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFIT  347


 Score = 51.6 bits (122),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 42/62 (68%), Gaps = 0/62 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +FS+  +  EI +A+  + +  PT++Q E IP+ L   D+++ ++TGSGKT +F IP+ +
Sbjct  5   SFSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE  64

Query  63  IV  64
           +V
Sbjct  65  MV  66


>sp|Q2R1M8|RH52C_ORYSJ DEAD-box ATP-dependent RNA helicase 52C 
OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0599500 PE=3 
SV=1
Length=623

 Score = 154 bits (390),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 160/340 (47%), Gaps = 64/340 (19%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P ALI+ P+REL+ Q     ++F        +R ++  GG     QL  LE GVDI+V T
Sbjct  236  PLALILSPTRELSMQIHEEARKFSYQT---GVRVVVAYGGAPINQQLRDLERGVDILVAT  292

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL DL+   +++L  +R+L LDEAD +L  G+   + R+  Q+  +   G R Q ++ 
Sbjct  293  PGRLVDLLERARVSLQSIRYLALDEADRMLDMGFEPQVRRIVEQM-DMPPPGAR-QTMLF  350

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL-------  459
            SAT               FP  +     D + + +   V  V   TD + +R+       
Sbjct  351  SAT---------------FPKEIQRMASDFLENYIFLAVGRVGSSTDLIVQRVEFVQEAD  395

Query  460  GKSHIRTDDVHA-KDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
             +SH+  D +HA +D+  PG                          K    ++F  TK  
Sbjct  396  KRSHL-MDLLHAQRDSATPG--------------------------KPTLTLVFVETKRG  428

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
             D+LE +    G         F    +HGDR   ER+  L  FK G    L+ TDVAARG
Sbjct  429  ADSLEHWLCMNG---------FPATSIHGDRNQQEREYALRSFKSGHTPILVATDVAARG  479

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            +DI  V +V+N  LP++  +YVHRIGR GRA + GLA + 
Sbjct  480  LDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAF  519


 Score = 50.1 bits (118),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 0/86 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+E+ +   +   +    ++ PT +Q  +IP+ L G D++  A+TGSGKT AF  P+I  
Sbjct  157  FAEIDLGQALNDNIRRCKYVRPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISG  216

Query  64   VYETLKDQQEGKKGKTTIKTGASVLN  89
            +      Q+  + G  T    A +L+
Sbjct  217  IMRGPPAQRPQRGGMRTACPLALILS  242


>sp|Q55804|CRHR_SYNY3 RNA helicase CrhR OS=Synechocystis sp. (strain 
PCC 6803 / Kazusa) OX=1111708 GN=crhR PE=1 SV=1
Length=492

 Score = 152 bits (385),  Expect = 3e-38, Method: Compositional matrix adjust.
 Identities = 105/333 (32%), Positives = 164/333 (49%), Gaps = 60/333 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+RELA+Q    +K F       +L  L + GG +   Q+  LE GV IVVGTP
Sbjct  76   QALILTPTRELAQQVAEAMKDFSH---ERRLFILNVYGGQSIERQIRSLERGVQIVVGTP  132

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ DL+   KL L  ++++VLDEAD +LS G+ D +  +  + P         Q    S
Sbjct  133  GRVIDLIDRKKLKLETIQWVVLDEADEMLSMGFIDDVKTILRKTPPTR------QTACFS  186

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+   ++K+L  + ++ P  V +K   S P  +   +  V                   
Sbjct  187  ATMPR-EIKELVNQFLNDPALVTVKQTQSTPTRIEQQLYHV-------------------  226

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK-MDQAIIFCRTKIDCDNLEQYF  526
                          P  WS+A        A++ I E +  + AIIF RTK    +L    
Sbjct  227  --------------PRGWSKA-------KALQPILEMEDPESAIIFVRTKQTAADLTSRL  265

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
             + G   D+          HG+    +R++ + RF+ G ++ ++ TD+AARG+D++ + +
Sbjct  266  QEAGHSVDE---------YHGNLSQSQRERLVHRFRDGKIKLVVATDIAARGLDVNNLSH  316

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            V+N  LPD  + Y+HRIGR GRA + G AI+LV
Sbjct  317  VVNFDLPDNAETYIHRIGRTGRAGKTGKAIALV  349


 Score = 56.6 bits (135),  Expect = 6e-07, Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 43/60 (72%), Gaps = 0/60 (0%)

Query  2   AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
           + F+++G+  +  Q + ++ +  PT IQ E+IPL+L G D+L  ++TG+GKT AF++P++
Sbjct  7   STFADLGLSEKRCQLLADIGFEAPTQIQTEAIPLLLSGRDMLAQSQTGTGKTAAFALPLM  66


>sp|Q84W89|RH37_ARATH DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis 
thaliana OX=3702 GN=RH37 PE=2 SV=2
Length=633

 Score = 154 bits (390),  Expect = 3e-38, Method: Compositional matrix adjust.
 Identities = 113/360 (31%), Positives = 174/360 (48%), Gaps = 66/360 (18%)

Query  266  IVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
            I+K QH    + ++T +    P A+I+ P+RELA Q  +  K+F        ++ ++  G
Sbjct  221  IMKDQHVQRPRGSRTVY----PLAVILSPTRELASQIHDEAKKFSYQT---GVKVVVAYG  273

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            G     QL  LE GVDI+V TPGRL+DL+   ++++  +RFL LDEAD +L  G+   I 
Sbjct  274  GTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIR  333

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
            ++  Q+  +   G R Q ++ SAT               FP  +     D + + +   V
Sbjct  334  KIVEQM-DMPPRGVR-QTLLFSAT---------------FPREIQRLAADFLANYIFLAV  376

Query  446  VPVNPKTDRLWERL-------GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAV  498
              V   TD + +R+        +SH+  D +HA+                   ++G+ A+
Sbjct  377  GRVGSSTDLIVQRVEFVLDSDKRSHL-MDLLHAQRENG---------------IQGKQAL  420

Query  499  RAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNL  558
                       ++F  TK   D+LE +    G         F    +HGDR   ER+  L
Sbjct  421  ----------TLVFVETKRGADSLENWLCING---------FPATSIHGDRTQQEREVAL  461

Query  559  ERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            + FK G    L+ TDVAARG+DI  V +V+N  LP++  +YVHRIGR GRA + GLA + 
Sbjct  462  KAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAF  521


 Score = 51.6 bits (122),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 4/87 (5%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+E+ +   +   +    ++ PT +Q  +IP++L G D++  A+TGSGKT AF  P+I  
Sbjct  161  FAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISG  220

Query  64   VYETLKDQQ-EGKKGKTTIKTGASVLN  89
            +   +KDQ  +  +G  T+   A +L+
Sbjct  221  I---MKDQHVQRPRGSRTVYPLAVILS  244


>sp|A2QFL3|DBP3_ASPNC ATP-dependent RNA helicase dbp3 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=dbp3 PE=3 SV=1
Length=495

 Score = 152 bits (383),  Expect = 4e-38, Method: Compositional matrix adjust.
 Identities = 116/351 (33%), Positives = 165/351 (47%), Gaps = 62/351 (18%)

Query  274  NAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQL  333
            N Q +  K  P  P A+++ P+RELA Q  + I +F + +D   ++   I GGV   +Q 
Sbjct  139  NLQDSAKKGKPYKPTAVMISPTRELAMQIHDQISKFAELVD---IKVACIFGGVKKEEQR  195

Query  334  SVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ  393
              L+    IVV TPGRL DL + G ++L +V++LVLDEAD +L +G+   I  +   +P 
Sbjct  196  EALKTAA-IVVATPGRLKDLQNDGSVDLGKVKYLVLDEADRMLDKGFEQDIKDIIRPMPV  254

Query  394  VTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVP----DTVHHVVVPVN  449
                  + Q ++ +AT     V+ L+   M  P  V + GE S        +  VV  V 
Sbjct  255  -----SKRQTVMFTATWPPV-VRDLAATFMTSPVTVTIGGEPSADPRANTRIKQVVEVVK  308

Query  450  P--KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
            P  K  RL + L K                               KG  +         D
Sbjct  309  PHEKEQRLVQLLNKYQ-----------------------------KGPSS--------SD  331

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
            + ++FC  K +   +E+    +G         F    +HGD    ER ++LE FKKG   
Sbjct  332  KILVFCLYKKEAVRVERLLWNKG---------FKVAGIHGDLGQQERFKSLESFKKGVST  382

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
             L+ TDVAARG+DI  V  VINVT P   ++YVHRIGR GRA   G AI+L
Sbjct  383  VLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHRIGRTGRAGAEGHAITL  433


 Score = 44.3 bits (103),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 41/81 (51%), Gaps = 8/81 (10%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTG  84
            PT IQ+ + P +  G DV+  AETGSGKT  F +P ++ +      Q   KKGK    T 
Sbjct  101  PTAIQSATWPFLFSGRDVIGIAETGSGKTLGFGLPCLKNL------QDSAKKGKPYKPTA  154

Query  85   A--SVLNKWQMNPYDRGSAFA  103
               S   +  M  +D+ S FA
Sbjct  155  VMISPTRELAMQIHDQISKFA  175


>sp|P44586|DEAD_HAEIN ATP-dependent RNA helicase DeaD OS=Haemophilus 
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) 
OX=71421 GN=deaD PE=3 SV=1
Length=613

 Score = 154 bits (388),  Expect = 5e-38, Method: Compositional matrix adjust.
 Identities = 106/358 (30%), Positives = 170/358 (47%), Gaps = 60/358 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+ L++ P+RELA Q  +  + F KY    ++  + + GG     QL  L+ G  +VVGT
Sbjct  74   PQMLVMAPTRELAIQVADACELFVKYAQGTRI--VTLYGGQRYDIQLRALKQGAQVVVGT  131

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGR+ D +  G LNLS++RF+VLDEAD +L  G+ D +  +  ++P+        Q  + 
Sbjct  132  PGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPE------NHQTALF  185

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLK-GEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
            SAT+    +++++++ M+ P  V +K   ++ PD                W         
Sbjct  186  SATMPE-PIRRITKRFMNDPQEVKIKVNNENAPDIDQSC-----------WY--------  225

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
               VH                    + K E  +R ++    D AIIF RTK    ++ + 
Sbjct  226  ---VHG-------------------VRKNEALLRFLEVEDFDAAIIFARTKTGTLDITEL  263

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
              + G         F    L+GD     R+Q L+R + G +  ++ TDVAARGIDI  + 
Sbjct  264  LEKNG---------FRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVAARGIDIERIS  314

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRL  643
             V+N  +P + ++YVHRIGR GRA R G A+  V   + ++  ++     KG     L
Sbjct  315  LVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMKKGINEVEL  372


 Score = 55.1 bits (131),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 40/59 (68%), Gaps = 0/59 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            F+++G+   I +AV ++ +  P+ IQ   IP +L G DVL  A+TGSGKT AF++P++
Sbjct  6   TFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLL  64


>sp|Q9SZB4|RH43_ARATH Putative DEAD-box ATP-dependent RNA helicase 
43 OS=Arabidopsis thaliana OX=3702 GN=RH43 PE=3 SV=1
Length=542

 Score = 152 bits (384),  Expect = 6e-38, Method: Compositional matrix adjust.
 Identities = 108/343 (31%), Positives = 168/343 (49%), Gaps = 60/343 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDN---PKLRELLIIGGVAARDQLSVLENGVDIV  343
            P AL++ PSRELA+QT + ++QF   +     P+LR LL IGGV  R QL V++ GV IV
Sbjct  174  PIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIV  233

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            V TPGRL D+++  K++L   R L LDEAD L+  G+ D I  + +          + Q 
Sbjct  234  VATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHF------KSQRQT  287

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            ++ SAT+ +        KI  F T   +K     P TV+                +G++ 
Sbjct  288  LLFSATMPA--------KIQIFATSALVK-----PVTVN----------------VGRAG  318

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                DV             E   +  KI+   Y +  +++      +IFC  K D D++ 
Sbjct  319  AANLDV---------IQEVEYVKQEAKIV---YLLECLQK-TTPPVLIFCENKADVDDIH  365

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
            +Y + +G            V +HG +   +R   +  FK G    L+ TDVA++G+D   
Sbjct  366  EYLLLKG---------VEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPD  416

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
            + +VIN  +P E +NYVHRIGR GR  + G+A + +   + ++
Sbjct  417  IQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEI  459


 Score = 41.6 bits (96),  Expect = 0.025, Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 0/58 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            F +M     + + +++   + PT IQ + +P++L G D++  A TGSGKT  F +P+I
Sbjct  99   FMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMI  156


>sp|Q12099|FAL1_YEAST ATP-dependent RNA helicase FAL1 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=FAL1 
PE=1 SV=1
Length=399

 Score = 149 bits (375),  Expect = 9e-38, Method: Compositional matrix adjust.
 Identities = 127/425 (30%), Positives = 193/425 (45%), Gaps = 75/425 (18%)

Query  210  KDLGLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDG--Y  265
            +D  L F+    +K  + F +  LK+  L+  +++G   F+ P      A+++   G   
Sbjct  7    EDQKLKFKTSKKLKVSSTFESMNLKDDLLRGIYSYG---FEAPSSIQSRAITQIISGKDV  63

Query  266  IVKSQHSGNAQVTQTKFLPNAP-------KALIVEPSRELAEQTLNNIKQFKKYIDNPKL  318
            I ++Q       T T  L  A        +ALI+ P+RELA Q    +K    Y++   +
Sbjct  64   IAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMN---V  120

Query  319  RELLIIGGVAARDQLSVLE-NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLS  377
                I GG   +D L  ++ +G   V GTPGR+ D++    L    V+ LVLDEAD LLS
Sbjct  121  NAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLS  180

Query  378  Q--GYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED  435
            +  G+   I  +  ++P      K  QV+V SAT++  D+ +++ K M+ P  + +K ++
Sbjct  181  ETLGFKQQIYDIFAKLP------KNCQVVVVSATMNK-DILEVTRKFMNDPVKILVKRDE  233

Query  436  SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGE  495
               + +   VV V+                                 E W       K +
Sbjct  234  ISLEGIKQYVVNVDK--------------------------------EEW-------KFD  254

Query  496  YAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERK  555
                      + Q +IFC TK   D L Q  IQ           F+ V +HGD K  ER 
Sbjct  255  TLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSN---------FAVVSMHGDMKQEERD  305

Query  556  QNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLA  615
            + +  F+ G  R LI TDV ARGID+  V  VIN  LP+  +NY+HRIGR GR  R G+A
Sbjct  306  KVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVA  365

Query  616  ISLVA  620
            I+ + 
Sbjct  366  INFIT  370


 Score = 49.7 bits (117),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 60/129 (47%), Gaps = 6/129 (5%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F  M +  ++ + +    +  P+ IQ+ +I  I+ G DV+  A++G+GKT  F+I ++
Sbjct  23   STFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLL  82

Query  62   QIVYETLKDQQEGKKGKT---TIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKE  118
            Q +    KD Q      T     + G  V N   +  Y   +AFAI          +  +
Sbjct  83   QAIDLRKKDLQALILSPTRELASQIGQVVKN---LGDYMNVNAFAITGGKTLKDDLKKMQ  139

Query  119  WHGCRATKG  127
             HGC+A  G
Sbjct  140  KHGCQAVSG  148


>sp|A6ZXY5|FAL1_YEAS7 ATP-dependent RNA helicase FAL1 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=FAL1 PE=3 SV=1
Length=399

 Score = 149 bits (375),  Expect = 9e-38, Method: Compositional matrix adjust.
 Identities = 127/425 (30%), Positives = 193/425 (45%), Gaps = 75/425 (18%)

Query  210  KDLGLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDG--Y  265
            +D  L F+    +K  + F +  LK+  L+  +++G   F+ P      A+++   G   
Sbjct  7    EDQKLKFKTSKKLKVSSTFESMNLKDDLLRGIYSYG---FEAPSSIQSRAITQIISGKDV  63

Query  266  IVKSQHSGNAQVTQTKFLPNAP-------KALIVEPSRELAEQTLNNIKQFKKYIDNPKL  318
            I ++Q       T T  L  A        +ALI+ P+RELA Q    +K    Y++   +
Sbjct  64   IAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMN---V  120

Query  319  RELLIIGGVAARDQLSVLE-NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLS  377
                I GG   +D L  ++ +G   V GTPGR+ D++    L    V+ LVLDEAD LLS
Sbjct  121  NAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLS  180

Query  378  Q--GYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED  435
            +  G+   I  +  ++P      K  QV+V SAT++  D+ +++ K M+ P  + +K ++
Sbjct  181  ETLGFKQQIYDIFAKLP------KNCQVVVVSATMNK-DILEVTRKFMNDPVKILVKRDE  233

Query  436  SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGE  495
               + +   VV V+                                 E W       K +
Sbjct  234  ISLEGIKQYVVNVDK--------------------------------EEW-------KFD  254

Query  496  YAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERK  555
                      + Q +IFC TK   D L Q  IQ           F+ V +HGD K  ER 
Sbjct  255  TLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSN---------FAVVSMHGDMKQEERD  305

Query  556  QNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLA  615
            + +  F+ G  R LI TDV ARGID+  V  VIN  LP+  +NY+HRIGR GR  R G+A
Sbjct  306  KVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVA  365

Query  616  ISLVA  620
            I+ + 
Sbjct  366  INFIT  370


 Score = 49.7 bits (117),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 60/129 (47%), Gaps = 6/129 (5%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F  M +  ++ + +    +  P+ IQ+ +I  I+ G DV+  A++G+GKT  F+I ++
Sbjct  23   STFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLL  82

Query  62   QIVYETLKDQQEGKKGKT---TIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKE  118
            Q +    KD Q      T     + G  V N   +  Y   +AFAI          +  +
Sbjct  83   QAIDLRKKDLQALILSPTRELASQIGQVVKN---LGDYMNVNAFAITGGKTLKDDLKKMQ  139

Query  119  WHGCRATKG  127
             HGC+A  G
Sbjct  140  KHGCQAVSG  148


>sp|Q0D8N0|RH53_ORYSJ DEAD-box ATP-dependent RNA helicase 53 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os07g0143700 PE=2 
SV=2
Length=602

 Score = 152 bits (385),  Expect = 1e-37, Method: Compositional matrix adjust.
 Identities = 108/343 (31%), Positives = 168/343 (49%), Gaps = 66/343 (19%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P A+I+ P+RELA Q     K+FK   ++  L  L + GGV    Q+  L  GVD+VVGT
Sbjct  159  PLAIILAPTRELARQVE---KEFK---ESAPLDSLCVYGGVPISHQMRALNYGVDVVVGT  212

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGR+ DL+  G LNLS+++F+VLDEAD +L+ G+ + +  +   +PQ        Q ++ 
Sbjct  213  PGRIIDLLRRGVLNLSEIQFVVLDEADQMLAVGFDEDVEVIMENLPQ------NRQSMLF  266

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDS--VPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            SAT+ S+ ++K++ K +  P  +DL G++   +P+ +    +          E  GK  I
Sbjct  267  SATMPSW-IRKITSKYLKDPIIIDLVGDEDQKLPEGISLYSI--------ASEHYGKPSI  317

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM-DQAIIFCRTKIDCDNLE  523
                                                IKEH    + I+F +TK + D L 
Sbjct  318  LGP--------------------------------LIKEHANGGKCIVFTQTKREADRLA  345

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
                         G  ++C  LHGD   ++R++ L  F+ G    L+ TDVAARG+DI  
Sbjct  346  YAM----------GRSYACQALHGDISQNQRERTLSGFRDGRFNILVATDVAARGLDIPN  395

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
            V  VI+  LP+  + +VHR GR  RA + G AI +   ++ + 
Sbjct  396  VDLVIHYELPNTSELFVHRSGRTARAGKKGSAILIYTNDQARA  438


>sp|A5DL80|DBP2_PICGU ATP-dependent RNA helicase DBP2 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP2 PE=3 
SV=3
Length=554

 Score = 152 bits (383),  Expect = 1e-37, Method: Compositional matrix adjust.
 Identities = 108/347 (31%), Positives = 161/347 (46%), Gaps = 55/347 (16%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  L++ P+RELA Q      +F     + ++R   I GG     Q+  L  GV+I +
Sbjct  197  DGPIVLVLAPTRELAVQIQQECSKFGA---SSRIRNTCIYGGAPKGQQIRDLARGVEICI  253

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D++ TGK NL +V +LVLDEAD +L  G+   I ++ +QI          Q +
Sbjct  254  ATPGRLIDMLETGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQI------RPDRQTL  307

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT    +V+ L+   ++ P  V +   +                       L  SH 
Sbjct  308  MWSATWPK-EVQTLTRDYLNDPIQVTIGSLE-----------------------LAASHT  343

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
             T  V               + +  +++K      A KE K+   +IF  TK  CD +  
Sbjct  344  ITQIVEVLSE----------FEKRDRLVKHLETATADKEAKV---LIFSSTKRACDEITS  390

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
            Y    G         +  + +HGD++ +ER   L  FK G    ++ TDVAARGID+ G+
Sbjct  391  YLRADG---------WPALAIHGDKQQNERDWVLREFKTGKSPIMVATDVAARGIDVKGI  441

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVC  631
             YVIN  +P   ++YVHRIGR GRA   G A+SL      K+   +C
Sbjct  442  SYVINYDMPGNIEDYVHRIGRTGRAGTTGTAVSLFTEANSKLGGDLC  488


 Score = 42.0 bits (97),  Expect = 0.019, Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (56%), Gaps = 0/61 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F E G    +   V++  +  PT IQ +  P+ L G D++  A TGSGKT ++ +P 
Sbjct  124  ITSFDEAGFPDYVLNEVKQQGFPKPTAIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPS  183

Query  61   I  61
            I
Sbjct  184  I  184


>sp|Q6BT27|FAL1_DEBHA ATP-dependent RNA helicase FAL1 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=FAL1 PE=3 SV=1
Length=399

 Score = 148 bits (374),  Expect = 1e-37, Method: Compositional matrix adjust.
 Identities = 107/335 (32%), Positives = 162/335 (48%), Gaps = 58/335 (17%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+RELA+Q  + +K    Y++   +     IGG    + +  L+ G  IV GTP
Sbjct  96   QALILSPTRELAQQIQSVVKHLGDYMN---VHTHACIGGTHVGEDIKKLQQGQQIVSGTP  152

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++ ++LDEAD L+++G+ + I  ++  +P        +QV+V S
Sbjct  153  GRVVDMIKRRNLATRNIKMMILDEADELMTKGFKEQIYEIYRYLP------PGVQVVVVS  206

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL S +V +++ K    P  + +K +D                     E + + HI+ +
Sbjct  207  ATL-SREVLEVTGKFTTDPVKILVKRDDIT------------------LEGIKQYHIQCE  247

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W       K +          + QA+IFC TK+  + L     
Sbjct  248  --------------KEDW-------KFDTLCDLYDSLTITQAVIFCNTKVKVNWLTDQM-  285

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
                    K   F+ V +HGD K  ER   +  F+ G+ R LI TDV ARGID+  V  V
Sbjct  286  --------KKANFTVVAMHGDMKQDERDSIMNDFRTGNSRVLISTDVWARGIDVQQVSLV  337

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            IN  LP +K+NYVHRIGR GR  R G+AI+LV  E
Sbjct  338  INYDLPTDKENYVHRIGRSGRFGRKGVAINLVTKE  372


 Score = 44.3 bits (103),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 21/71 (30%), Positives = 40/71 (56%), Gaps = 0/71 (0%)

Query  2   AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
           A F  M +  ++ + +    +  P+ IQ+ +I  I+ G D +  A++G+GKT  FSI ++
Sbjct  26  ATFESMNLKTDLLKGIYGYGFEAPSAIQSRAIMQIISGKDTIAQAQSGTGKTATFSIGML  85

Query  62  QIVYETLKDQQ  72
           +++    KD Q
Sbjct  86  EVIDTKSKDCQ  96


>sp|Q0E3X4|RH35A_ORYSJ DEAD-box ATP-dependent RNA helicase 35A 
OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0150100 PE=2 
SV=2
Length=627

 Score = 152 bits (384),  Expect = 2e-37, Method: Compositional matrix adjust.
 Identities = 111/336 (33%), Positives = 166/336 (49%), Gaps = 60/336 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFK---KYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P  +I+ PSRELA+QT + I+QF    K    P++R LL IGGV  R QL V++ GV IV
Sbjct  259  PFGMIICPSRELAKQTYDVIEQFLVPLKEAGYPEIRPLLCIGGVDMRAQLDVVKKGVHIV  318

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            V TPGRL DL++  K+NL   R+L LDEAD L+  G+ D I  + +          + Q 
Sbjct  319  VATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF------KAQRQT  372

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            ++ SAT        + +KI +F               V  V+V V         R G ++
Sbjct  373  LLFSAT--------MPKKIQNFAKSA----------LVKPVIVNVG--------RAGAAN  406

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
            +   DV             E   E  +I+   Y +  +++      ++FC  K D D + 
Sbjct  407  L---DV---------IQEVEYVKEDARII---YLLECLQKTP-PPVLVFCENKADVDYIH  450

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
            +Y + +G            V +HG +   ER+  +E FK G    L+ TDVA++G+D   
Sbjct  451  EYLLLKG---------VEAVAIHGGKDQEERENAIEFFKNGKKDVLVATDVASKGLDFPD  501

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            + +VIN  +P E +NYVHRIGR GR  + G+A + +
Sbjct  502  IQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFI  537


 Score = 43.5 bits (101),  Expect = 0.008, Method: Compositional matrix adjust.
 Identities = 20/63 (32%), Positives = 37/63 (59%), Gaps = 0/63 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F ++ +   + + + E   + PT IQ + +P++L G D++  A TGSGKT  F +P+I +
Sbjct  184  FRDLRLPEPMLRKLREKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIMV  243

Query  64   VYE  66
              +
Sbjct  244  ALQ  246


>sp|Q9LUW5|RH53_ARATH DEAD-box ATP-dependent RNA helicase 53, 
mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RH53 PE=1 SV=1
Length=616

 Score = 151 bits (382),  Expect = 3e-37, Method: Compositional matrix adjust.
 Identities = 105/340 (31%), Positives = 167/340 (49%), Gaps = 61/340 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P  L++ P+RELA Q     K+F++    P L  + + GG     Q+  L+ GVD+ VGT
Sbjct  179  PLCLVLAPTRELARQVE---KEFRE--SAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGT  233

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGR+ DL+  G LNLS+V+F+VLDEAD +L  G+++ +  +  ++P+      + Q ++ 
Sbjct  234  PGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPE------KRQSMMF  287

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT+ S+ ++ L++K ++ P  VDL G+                      ++L    I T
Sbjct  288  SATMPSW-IRSLTKKYLNNPLTVDLVGDSD--------------------QKLADG-ITT  325

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH-KMDQAIIFCRTKIDCDNLEQY  525
              + A    R     P                  + EH K  + I+F +TK D D L   
Sbjct  326  YSIIADSYGRASIIGP-----------------LVTEHAKGGKCIVFTQTKRDADRLSYA  368

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
                          F C  LHGD    +R++ L  F+ G    L+ TDVAARG+D+  V 
Sbjct  369  L----------ARSFKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVD  418

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
             +I+  LP+  + +VHR GR GRA + G AI + + ++ +
Sbjct  419  LIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSR  458


 Score = 43.1 bits (100),  Expect = 0.010, Method: Compositional matrix adjust.
 Identities = 25/61 (41%), Positives = 37/61 (61%), Gaps = 4/61 (7%)

Query  3    AFSEMGVMPEIAQAVEE--MDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            A SE+G+ PEI +A+    ++ L P  IQ   +   + G D++  A TG+GKT AF IP+
Sbjct  105  AISELGISPEIVKALSSKGIEKLFP--IQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPI  162

Query  61   I  61
            I
Sbjct  163  I  163


>sp|P24783|DBP2_YEAST ATP-dependent RNA helicase DBP2 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP2 
PE=1 SV=1
Length=546

 Score = 150 bits (379),  Expect = 3e-37, Method: Compositional matrix adjust.
 Identities = 111/344 (32%), Positives = 167/344 (49%), Gaps = 62/344 (18%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  L++ P+RELA Q      +F     + ++R   + GGV    Q+  L  G +IV+
Sbjct  185  DGPIVLVLAPTRELAVQIQTECSKFGH---SSRIRNTCVYGGVPKSQQIRDLSRGSEIVI  241

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D++  GK NL +V +LVLDEAD +L  G+   I ++ +QI          Q +
Sbjct  242  ATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQI------RPDRQTL  295

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKG-EDSVPDTVHHVVVPVN--PKTDRLWERLGK  461
            + SAT    +VK+L+   ++ P  V +   E S    +  +V  V+   K DRL + L  
Sbjct  296  MWSATWPK-EVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYL--  352

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
                  +  ++DN                    EY           + +IF  TK  CD+
Sbjct  353  ------ETASQDN--------------------EY-----------KTLIFASTKRMCDD  375

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            + +Y  + G         +  + +HGD+   ER   L+ F+ G    ++ TDVAARGID+
Sbjct  376  ITKYLREDG---------WPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDV  426

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
             G+ YVIN  +P   ++YVHRIGR GRA   G AIS   TE+ K
Sbjct  427  KGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFF-TEQNK  469


 Score = 38.9 bits (89),  Expect = 0.17, Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 0/61 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E G    +   V+   +  PT IQ +  P+ L G D++  A TGSGKT ++ +P 
Sbjct  112  ITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPG  171

Query  61   I  61
            I
Sbjct  172  I  172


>sp|A6ZRX0|DBP2_YEAS7 ATP-dependent RNA helicase DBP2 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DBP2 PE=3 SV=1
Length=546

 Score = 150 bits (379),  Expect = 3e-37, Method: Compositional matrix adjust.
 Identities = 111/344 (32%), Positives = 167/344 (49%), Gaps = 62/344 (18%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  L++ P+RELA Q      +F     + ++R   + GGV    Q+  L  G +IV+
Sbjct  185  DGPIVLVLAPTRELAVQIQTECSKFGH---SSRIRNTCVYGGVPKSQQIRDLSRGSEIVI  241

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D++  GK NL +V +LVLDEAD +L  G+   I ++ +QI          Q +
Sbjct  242  ATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQI------RPDRQTL  295

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKG-EDSVPDTVHHVVVPVN--PKTDRLWERLGK  461
            + SAT    +VK+L+   ++ P  V +   E S    +  +V  V+   K DRL + L  
Sbjct  296  MWSATWPK-EVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYL--  352

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
                  +  ++DN                    EY           + +IF  TK  CD+
Sbjct  353  ------ETASQDN--------------------EY-----------KTLIFASTKRMCDD  375

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            + +Y  + G         +  + +HGD+   ER   L+ F+ G    ++ TDVAARGID+
Sbjct  376  ITKYLREDG---------WPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDV  426

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
             G+ YVIN  +P   ++YVHRIGR GRA   G AIS   TE+ K
Sbjct  427  KGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFF-TEQNK  469


 Score = 38.9 bits (89),  Expect = 0.17, Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 0/61 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E G    +   V+   +  PT IQ +  P+ L G D++  A TGSGKT ++ +P 
Sbjct  112  ITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPG  171

Query  61   I  61
            I
Sbjct  172  I  172


>sp|Q8L7S8|RH3_ARATH DEAD-box ATP-dependent RNA helicase 3, chloroplastic 
OS=Arabidopsis thaliana OX=3702 GN=RH3 PE=1 SV=2
Length=748

 Score = 152 bits (385),  Expect = 3e-37, Method: Compositional matrix adjust.
 Identities = 109/353 (31%), Positives = 174/353 (49%), Gaps = 61/353 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            PK L++ P+RELA+Q    IK+       P L  + + GGV+   Q S L  GVD+VVGT
Sbjct  181  PKFLVLAPTRELAKQVEKEIKE-----SAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGT  235

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGR+ DL+    L L +V +LVLDEAD +L+ G+ + +  +   +P       + Q ++ 
Sbjct  236  PGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPT------KRQSMLF  289

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT+ ++ VKKL+ K +  P  +DL G+                + ++L E +    I T
Sbjct  290  SATMPTW-VKKLARKYLDNPLNIDLVGD----------------QDEKLAEGIKLYAIAT  332

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                 +           + S+ I +    YA       K  + I+F +TK D D +    
Sbjct  333  TSTSKR----------TILSDLITV----YA-------KGGKTIVFTQTKRDADEVSLAL  371

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                       +  +   LHGD   H+R++ L  F++G    L+ TDVA+RG+DI  V  
Sbjct  372  ----------SNSIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDL  421

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCY  639
            VI+  LP++ + +VHR GR GRA + G AI +  + +++    +   R  GC+
Sbjct  422  VIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSL--ERDVGCH  472


 Score = 35.4 bits (80),  Expect = 2.3, Method: Compositional matrix adjust.
 Identities = 23/70 (33%), Positives = 40/70 (57%), Gaps = 4/70 (6%)

Query  3    AFSEMGVMPEIAQAVEE--MDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            A S++ +   + +++E+  +  L P  IQ   +   L G D++  A+TG+GKT AF IP+
Sbjct  103  AISKLSLPQRLEESLEKRGITHLFP--IQRAVLVPALQGRDIIARAKTGTGKTLAFGIPI  160

Query  61   IQIVYETLKD  70
            I+ + E   D
Sbjct  161  IKRLTEEAGD  170


>sp|Q9M2F9|RH52_ARATH DEAD-box ATP-dependent RNA helicase 52 OS=Arabidopsis 
thaliana OX=3702 GN=RH52 PE=1 SV=1
Length=646

 Score = 151 bits (382),  Expect = 4e-37, Method: Compositional matrix adjust.
 Identities = 108/332 (33%), Positives = 159/332 (48%), Gaps = 48/332 (14%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P A+I+ P+RELA Q  +  ++F        ++ ++  GG     Q+  LE GVDI+V T
Sbjct  225  PLAVILSPTRELACQIHDEARKFSYQT---GVKVVVAYGGTPVNQQIRELERGVDILVAT  281

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL+DL+  G+++L  VRFL LDEAD +L  G+   I ++  Q+  +   G R Q ++ 
Sbjct  282  PGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQM-DMPPPGVR-QTMLF  339

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT               FP  +     D + + +   V  V   TD + +R+       
Sbjct  340  SAT---------------FPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRV-------  377

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
            + VH  D            S  + +L  +       + K    ++F  TK   D+LE + 
Sbjct  378  EFVHDSDKR----------SHLMDLLHAQR--ENGNQGKQALTLVFVETKKGADSLENWL  425

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
               G         F    +HGDR   ER+  L  FK G    L+ TDVAARG+DI  V +
Sbjct  426  CING---------FPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAH  476

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            V+N  LP++  +YVHRIGR GRA   GLA + 
Sbjct  477  VVNFDLPNDIDDYVHRIGRTGRAGNSGLATAF  508


 Score = 49.3 bits (116),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 23/68 (34%), Positives = 41/68 (60%), Gaps = 3/68 (4%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+E+ +   +   ++   ++ PT +Q  +IP++  G D++  A+TGSGKT AF  P+I  
Sbjct  148  FAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISG  207

Query  64   VYETLKDQ  71
            +   +KDQ
Sbjct  208  I---MKDQ  212


>sp|Q6BY27|DBP2_DEBHA ATP-dependent RNA helicase DBP2 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP2 PE=3 SV=1
Length=536

 Score = 150 bits (378),  Expect = 4e-37, Method: Compositional matrix adjust.
 Identities = 109/350 (31%), Positives = 164/350 (47%), Gaps = 61/350 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  L++ P+RELA Q     ++  K+  + ++R   + GG     Q+  L  GV+I +
Sbjct  177  DGPIVLVLAPTRELAVQIQ---QECSKFGSSSRIRNTCVYGGAPKGQQIRDLARGVEICI  233

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D++ TGK NL +V +LVLDEAD +L  G+   I ++ +QI          Q +
Sbjct  234  ATPGRLIDMLETGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQI------RPDRQTL  287

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKG-EDSVPDTVHHVVVPVNP--KTDRLWERLGK  461
            + SAT    +V+ L+   ++ P  V +   E +   T+  +V  V    K DRL + L  
Sbjct  288  MWSATWPK-EVQALTRDYLNDPIQVTVGSLELAASHTITQLVEVVTEFEKRDRLIKHLET  346

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
            +   T D  AK                                     +IF  TK  CD 
Sbjct  347  A---TADPEAK------------------------------------CLIFASTKRTCDE  367

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            +  Y    G         +  + +HGD++  ER   L+ FK G    ++ TDVAARGID+
Sbjct  368  ITNYLRADG---------WPALAIHGDKQQGERDWVLKEFKTGKSPIMVATDVAARGIDV  418

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVC  631
             G+ YVIN+ +P   ++YVHRIGR GRA   G A+S       K+   +C
Sbjct  419  KGISYVINLDMPGNIEDYVHRIGRTGRAGSTGTAVSFFTDNNSKLGGDLC  468


 Score = 42.7 bits (99),  Expect = 0.011, Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 0/61 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F E G    + + V++  +  PT IQ +  P+ L G D++  A TGSGKT ++ +P 
Sbjct  104  ITSFDEAGFPDYVLKEVKQQGFPKPTSIQCQGWPMALSGRDMVGIASTGSGKTLSYCLPS  163

Query  61   I  61
            I
Sbjct  164  I  164


>sp|Q5JKF2|RH40_ORYSJ DEAD-box ATP-dependent RNA helicase 40 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os01g0549400 PE=2 
SV=2
Length=792

 Score = 152 bits (384),  Expect = 4e-37, Method: Compositional matrix adjust.
 Identities = 104/341 (30%), Positives = 166/341 (49%), Gaps = 57/341 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  L++ P+RELA Q L    +F +   + ++    + GG     QL  L+ GVD+VV
Sbjct  221  SGPTVLVLAPTRELATQILEEAVKFGR---SSRISSTCLYGGAPKGPQLRDLDRGVDVVV  277

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL+D++   +++L QV +LVLDEAD +L  G+   I ++  +IP       R Q +
Sbjct  278  ATPGRLNDILEMRRISLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIP------PRRQTL  331

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + +AT    +V++++E ++  P  V +   D                     E +  S I
Sbjct  332  MYTATWPK-EVRRIAEDLLVHPVQVTIGSVD---------------------ELVANSAI  369

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
             T +V             E+ + + K+ + E  +R+  +    + +IFC TK  CD L +
Sbjct  370  -TQNV-------------ELITPSEKLRRLEQILRS--QDSGSKVLIFCTTKRMCDQLAR  413

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
               +          QF    +HGD+   ER++ L  F+ G    L+ TDVAARG+DI  +
Sbjct  414  TLTR----------QFGASAIHGDKSQSEREKVLSHFRSGRSPILVATDVAARGLDIKDI  463

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
              VIN   P   ++YVHRIGR GRA   G+A +    +  K
Sbjct  464  RVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTFFCDQDSK  504


 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 23/59 (39%), Positives = 35/59 (59%), Gaps = 0/59 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
            + +F   G  PEI + ++   +  PT IQA+S P+ L   DV+  A+TGSGKT  + +P
Sbjct  149  ITSFETGGFPPEILKEIQRAGFSSPTPIQAQSWPIALQCQDVVAIAKTGSGKTLGYLLP  207


>sp|Q59LU0|DBP2_CANAL ATP-dependent RNA helicase DBP2 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP2 
PE=3 SV=2
Length=562

 Score = 150 bits (378),  Expect = 5e-37, Method: Compositional matrix adjust.
 Identities = 108/350 (31%), Positives = 167/350 (48%), Gaps = 61/350 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  L++ P+RELA Q      +F K   + ++R   + GG     Q+  L  GV+I +
Sbjct  199  DGPIVLVLAPTRELAVQIQTECSKFGK---SSRIRNTCVYGGAPKGPQIRDLARGVEICI  255

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D++  GK NL +V +LVLDEAD +L  G+   I ++ +QI          Q +
Sbjct  256  ATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQI------RPDRQTL  309

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKG-EDSVPDTVHHVVVPVN--PKTDRLWERLGK  461
            + SAT    +V++L+   ++ P  V +   E +   T+  +V  ++   K DRL + L  
Sbjct  310  MWSATWPK-EVQQLTRDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRLVKHLES  368

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
            +      ++ KDN               KIL                  +F  TK  CD 
Sbjct  369  A------LNEKDN---------------KIL------------------VFASTKRTCDE  389

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            +  Y    G         +  + +HGD++ +ER   L+ F+KG    ++ TDVAARGID+
Sbjct  390  ITTYLRSDG---------WPALAIHGDKEQNERDWVLDEFRKGKTSIMVATDVAARGIDV  440

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVC  631
             G+ +VIN  +P   ++YVHRIGR GR    G AIS       K+   +C
Sbjct  441  KGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSKLGGDLC  490


 Score = 43.5 bits (101),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (56%), Gaps = 0/61 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E G    + Q V++  +  PT IQ +  P+ L G D++  A TGSGKT ++ +P 
Sbjct  126  ITTFDEAGFPDYVLQEVKDQGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPS  185

Query  61   I  61
            I
Sbjct  186  I  186


>sp|A1C5V3|DBP3_ASPCL ATP-dependent RNA helicase dbp3 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp3 PE=3 SV=1
Length=503

 Score = 149 bits (375),  Expect = 5e-37, Method: Compositional matrix adjust.
 Identities = 117/355 (33%), Positives = 168/355 (47%), Gaps = 67/355 (19%)

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            + KF    P A+I+ P+RELA Q  +   Q  KY  +  ++   I GGV   +Q   L++
Sbjct  152  KIKFKNARPAAVIISPTRELAMQIYD---QISKYAGSIGIKATCIFGGVKKDEQREALKS  208

Query  339  GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
               IVV TPGRL DL + G ++L +V++LVLDEAD +L +G+   I  + +  P    D 
Sbjct  209  AA-IVVATPGRLKDLQNDGSVDLGKVKYLVLDEADRMLDKGFEQDIKDIISSTP----DS  263

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDS--------VPDTVHHVVVPVNP  450
            KR Q ++ +AT     V+ L+   M     V + G+ S        +  TV   VV  + 
Sbjct  264  KR-QTVMFTATWPP-SVRDLAATFMTSAVTVTIGGDPSADPRANTRIKQTVE--VVQSHD  319

Query  451  KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAI  510
            K  RL + L             +N R  A                          +D+ +
Sbjct  320  KEYRLVQLLS------------ENQRGAA-------------------------ALDKVL  342

Query  511  IFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLI  570
            +FC  K +   +E+           +   F    +HGD   HER ++L+ FK G    L+
Sbjct  343  VFCLYKKEAMRVERLL---------RNKNFKVAGIHGDLNQHERFKSLDAFKSGAATVLV  393

Query  571  CTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
             TDVAARG+DI  V  VINVT P   ++YVHRIGR GRA   G AI+L  TE +K
Sbjct  394  ATDVAARGLDIPSVKLVINVTFPLTVEDYVHRIGRTGRAGAEGRAITLF-TETDK  447


 Score = 47.8 bits (112),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 5/88 (6%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTG  84
            PT IQ+ + PL+  G DV+  AETGSGKT AF +P ++ + ++ K + +  +    I   
Sbjct  108  PTPIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKILDSGKIKFKNARPAAVI---  164

Query  85   ASVLNKWQMNPYDRGSAFA--IGSDGLC  110
             S   +  M  YD+ S +A  IG    C
Sbjct  165  ISPTRELAMQIYDQISKYAGSIGIKATC  192


>sp|A6RGE3|DBP2_AJECN ATP-dependent RNA helicase DBP2 OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=DBP2 PE=3 
SV=1
Length=542

 Score = 149 bits (377),  Expect = 6e-37, Method: Compositional matrix adjust.
 Identities = 106/344 (31%), Positives = 169/344 (49%), Gaps = 60/344 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  L++ P+RELA Q    I +F K   + ++R   + GGV    Q+  L  GV++ +
Sbjct  197  DGPIVLVLAPTRELAVQIQTEITKFGK---SSRIRNTCVYGGVPKGPQIRDLTRGVEVCI  253

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D++  GK NL +V +LVLDEAD +L  G+   I ++   + Q+  D    Q  
Sbjct  254  ATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKI---VSQIRPD---RQTC  307

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGED-SVPDTVHHVVVPVNP--KTDRLWERLGK  461
            + SAT    DV++L++  +H    V++   D S    +  +V  V+   K DR+ + L  
Sbjct  308  MWSATWPK-DVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAKHLD-  365

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
                                                 R ++ +K  + +IF  TK   D+
Sbjct  366  -------------------------------------RIMEANKHSKVLIFTGTKRVADD  388

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            + + F++Q G P         + +HGD++ +ER   L  FK G    ++ TDVA+RGID+
Sbjct  389  ITR-FLRQDGWP--------ALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVASRGIDV  439

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
              + +V+N   P+  ++YVHRIGR GRA   G AI+L  T+  K
Sbjct  440  RDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNAK  483


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 0/58 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            F E G    +   V+   +  PT IQA+  P+ L G DV+  AETGSGKT  + +P I
Sbjct  127  FDEAGFPQYVMSEVKAQGFARPTAIQAQGWPMALSGRDVVGIAETGSGKTLTYCLPAI  184


>sp|Q94A52|RH2_ARATH Eukaryotic initiation factor 4A-III homolog 
OS=Arabidopsis thaliana OX=3702 GN=EIF4A3 PE=1 SV=2
Length=408

 Score = 146 bits (369),  Expect = 7e-37, Method: Compositional matrix adjust.
 Identities = 108/358 (30%), Positives = 167/358 (47%), Gaps = 63/358 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+RELA QT   I+    +     ++    IGG +  + +  LE+GV +V GTP
Sbjct  105  QALILSPTRELATQTEKTIQAIGLH---ANIQAHACIGGNSVGEDIRKLEHGVHVVSGTP  161

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++ L+LDE+D +LS+G+ D I  ++  +P        LQV + S
Sbjct  162  GRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLP------PDLQVCLVS  215

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL   ++ +++ K M  P  + +K ++   + +    V V                   
Sbjct  216  ATL-PHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEK-----------------  257

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W      L   Y    I      QA+IFC TK   D L +   
Sbjct  258  ---------------EEWK--FDTLCDLYDTLTIT-----QAVIFCNTKRKVDYLSEKM-  294

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
                    + H F+   +HGD    ER   +  F+ GD R LI TDV ARGID+  V  V
Sbjct  295  --------RSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLV  346

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            IN  LP+ ++ Y+HRIGR GR  R G+AI+ V ++  K+   +     +  Y+T++ E
Sbjct  347  INYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDI-----EQYYSTQIDE  399


 Score = 46.2 bits (108),  Expect = 9e-04, Method: Compositional matrix adjust.
 Identities = 22/72 (31%), Positives = 44/72 (61%), Gaps = 0/72 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F++MG+  ++ + V E  +  P+ IQ  ++  IL G DV+  A++G+GKT   ++ V
Sbjct  34   ITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSV  93

Query  61   IQIVYETLKDQQ  72
             Q+V  + ++ Q
Sbjct  94   CQVVDTSSREVQ  105


>sp|Q8LA13|RH11_ARATH DEAD-box ATP-dependent RNA helicase 11 OS=Arabidopsis 
thaliana OX=3702 GN=RH11 PE=1 SV=1
Length=612

 Score = 150 bits (378),  Expect = 8e-37, Method: Compositional matrix adjust.
 Identities = 109/360 (30%), Positives = 169/360 (47%), Gaps = 68/360 (19%)

Query  266  IVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
            I+K QH    + ++  +    P A+I+ P+RELA Q  +  K+F        ++ ++  G
Sbjct  213  IMKDQHVERPRGSRAVY----PFAVILSPTRELACQIHDEAKKFSYQT---GVKVVVAYG  265

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            G     QL  LE G DI+V TPGRL+DL+   ++++  +RFL LDEAD +L  G+   I 
Sbjct  266  GTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIR  325

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
            ++  Q+  +   G R Q ++ SAT               FP+ +     D + + +   V
Sbjct  326  KIVEQM-DMPPRGVR-QTMLFSAT---------------FPSQIQRLAADFMSNYIFLAV  368

Query  446  VPVNPKTDRLWERL-------GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAV  498
              V   TD + +R+        +SH+  D +HA+  T                       
Sbjct  369  GRVGSSTDLITQRVEFVQESDKRSHL-MDLLHAQRET-----------------------  404

Query  499  RAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNL  558
                + K    ++F  TK   D LE +            ++F    +HGDR   ER+  L
Sbjct  405  ----QDKQSLTLVFVETKRGADTLENWLCM---------NEFPATSIHGDRTQQEREVAL  451

Query  559  ERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
              FK G    L+ TDVAARG+DI  V +V+N  LP++  +YVHRIGR GRA + G+A + 
Sbjct  452  RSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAF  511


 Score = 48.9 bits (115),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 4/69 (6%)

Query  22   WLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQ-EGKKGKTT  80
            ++ PT +Q  +IP++L   D++  A+TGSGKT AF  P+I  +   +KDQ  E  +G   
Sbjct  171  YVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGI---MKDQHVERPRGSRA  227

Query  81   IKTGASVLN  89
            +   A +L+
Sbjct  228  VYPFAVILS  236


>sp|O02494|IF4A_CRYPV Eukaryotic initiation factor 4A OS=Cryptosporidium 
parvum OX=5807 GN=EIF4-A PE=2 SV=1
Length=405

 Score = 146 bits (368),  Expect = 8e-37, Method: Compositional matrix adjust.
 Identities = 112/396 (28%), Positives = 187/396 (47%), Gaps = 64/396 (16%)

Query  250  PPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQF  309
            P  DG+  + +A  G   K+     A + +  +  NA + L++ P+RELA+Q        
Sbjct  64   PILDGYDTIGQAQSG-TGKTATFVIAALQKIDYSLNACQVLLLAPTRELAQQIQKVALAL  122

Query  310  KKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVL  369
              Y +   LR    +GG + RD ++ L++GV +VVGTPGR+ D++  G L +  ++  +L
Sbjct  123  GDYCE---LRCHACVGGTSVRDDMNKLKSGVHMVVGTPGRVFDMLDKGYLRVDNLKLFIL  179

Query  370  DEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWV  429
            DEAD +LS+G+   I+ +  ++PQ       +QV + SAT+ + ++  L+ + M  P  +
Sbjct  180  DEADEMLSRGFKVQIHDIFKKLPQ------DVQVALFSATMPN-EILHLTTQFMRDPKRI  232

Query  430  DLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAI  489
             +K E+   + +    V V                       KD           W    
Sbjct  233  LVKQEELTLEGIRQFYVGVE----------------------KDE----------W----  256

Query  490  KILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDR  549
               K +  +   +   + QAII+C T+   D L +           +   F+C  +HGD 
Sbjct  257  ---KMDTLIDLYETLTIVQAIIYCNTRRRVDQLTKQM---------RERDFTCSSMHGDM  304

Query  550  KPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA  609
               +R+  + +F+ G  R LI TD+ ARGID+  V  VIN  LP   + Y+HRIGR GR 
Sbjct  305  DQKDREVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPVSPETYIHRIGRSGRF  364

Query  610  ERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
             + G++I+ V  +       VC    +  YNT+++E
Sbjct  365  GKKGVSINFVTDDD-----IVCLRDIERHYNTQIEE  395


>sp|Q9LU46|RH35_ARATH DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis 
thaliana OX=3702 GN=RH35 PE=2 SV=1
Length=591

 Score = 149 bits (377),  Expect = 8e-37, Method: Compositional matrix adjust.
 Identities = 106/339 (31%), Positives = 161/339 (47%), Gaps = 66/339 (19%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDN---PKLRELLIIGGVAARDQLSVLENGVDIV  343
            P  LIV PSRELA QT   ++QF   +     P LR LL IGG+  R QL V++ GV IV
Sbjct  223  PIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIV  282

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            V TPGRL D+++  K++L   R+L LDEAD L+  G+ D I  + +          + Q 
Sbjct  283  VATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHF------KSQRQT  336

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            ++ SAT+               PT + +    ++   V  V V V               
Sbjct  337  LLFSATM---------------PTKIQIFARSAL---VKPVTVNVG--------------  364

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE---HKMDQAIIFCRTKIDCD  520
                        R GA + ++  E ++ +K E  +  + E         +IFC  K D D
Sbjct  365  ------------RAGAANLDVIQE-VEYVKQEAKIVYLLECLQKTSPPVLIFCENKADVD  411

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
            ++ +Y + +G            V +HG +   +R+  +  FK G    L+ TDVA++G+D
Sbjct  412  DIHEYLLLKG---------VEAVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASKGLD  462

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
               + +VIN  +P E +NYVHRIGR GR  + G+A + +
Sbjct  463  FPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFI  501


 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 23/63 (37%), Positives = 36/63 (57%), Gaps = 0/63 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +M     +   ++E   + PT IQ + +P+IL G D++  A TGSGKT  F +P+I I
Sbjct  148  FKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMI  207

Query  64   VYE  66
              +
Sbjct  208  ALQ  210


>sp|A1DG51|DBP3_NEOFI ATP-dependent RNA helicase dbp3 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp3 
PE=3 SV=1
Length=503

 Score = 148 bits (374),  Expect = 8e-37, Method: Compositional matrix adjust.
 Identities = 115/345 (33%), Positives = 163/345 (47%), Gaps = 63/345 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P A+I+ P+RELA Q  + + +F   +D   +R   I GGV   +Q   L+    IVV T
Sbjct  160  PAAVIISPTRELAMQIYDQLSKFGASVD---IRVTCIYGGVKKDEQREALKTAA-IVVAT  215

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL DL + G ++L +V++LVLDEAD +L +G+   I  +   +P    D KR Q ++ 
Sbjct  216  PGRLKDLQNDGSVDLGKVKYLVLDEADRMLDKGFEQDIKDIIRSMP----DSKR-QTVMF  270

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVP----DTVHHVVVPVNP--KTDRLWERLG  460
            +AT     V+ L+   M     V + G+ S        +  VV  V P  K  RL + L 
Sbjct  271  TATWPP-SVRDLAATFMTSAVTVTIGGDPSADPRANTRIKQVVEVVKPQEKEARLVQLLN  329

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
            +S                              +G            D+ ++FC  K +  
Sbjct  330  RSQ-----------------------------RGAAVC--------DKVLVFCLYKKEAV  352

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             +E+           +   F    +HGD   HER ++LE FK G    L+ TDVAARG+D
Sbjct  353  RVERLL---------RTKNFKVAGIHGDLNQHERFKSLEAFKTGAATVLVATDVAARGLD  403

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            I  V  VINVT P   ++YVHRIGR GRA   G AI+L  TE +K
Sbjct  404  IPSVKLVINVTFPLTVEDYVHRIGRTGRAGADGHAITLF-TETDK  447


 Score = 49.3 bits (116),  Expect = 9e-05, Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 3/83 (4%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTG  84
            PT IQ+ + PL+  G DV+  AETGSGKT AF +P I+ + ++ K +++  +    I   
Sbjct  108  PTPIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCIKKILDSGKVKRKHARPAAVI---  164

Query  85   ASVLNKWQMNPYDRGSAFAIGSD  107
             S   +  M  YD+ S F    D
Sbjct  165  ISPTRELAMQIYDQLSKFGASVD  187


>sp|Q9VHP0|DDX3_DROME ATP-dependent RNA helicase bel OS=Drosophila 
melanogaster OX=7227 GN=bel PE=1 SV=1
Length=798

 Score = 151 bits (382),  Expect = 9e-37, Method: Compositional matrix adjust.
 Identities = 105/347 (30%), Positives = 169/347 (49%), Gaps = 54/347 (16%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P  L++ P+RELA Q     ++ KK+    ++R  ++ GG    +Q+  L+ G  ++V T
Sbjct  379  PLGLVLAPTRELATQIF---EEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVAT  435

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL+D+++ GK+ L  +RFLVLDEAD +L  G+   I R+  Q+  +   G+R Q ++ 
Sbjct  436  PGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQL-NMPPTGQR-QTLMF  493

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT     +++L+   +    ++ +    S  + +   +         LW          
Sbjct  494  SATFPK-QIQELASDFLSNYIFLAVGRVGSTSENITQTI---------LW----------  533

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ-AIIFCRTKIDCDNLEQY  525
                           P+  S  + +L    ++R   E+  D   +IF  TK   D+LE++
Sbjct  534  ------------VYEPDKRSYLLDLLS---SIRDGPEYTKDSLTLIFVETKKGADSLEEF  578

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
              Q                +HGDR   ER++ L  F+ GD   L+ T VAARG+DI  V 
Sbjct  579  LYQ---------CNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARGLDIPHVK  629

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
            +VIN  LP + + YVHRIGR GR   +G+A S    EK +   ++CS
Sbjct  630  HVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFF-NEKNR---NICS  672


 Score = 51.6 bits (122),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 23/66 (35%), Positives = 40/66 (61%), Gaps = 0/66 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F ++ +   I   V    +  PT +Q  +IP+I+ G D++  A+TGSGKT AF +P+
Sbjct  294  ITSFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPI  353

Query  61   IQIVYE  66
            +  +YE
Sbjct  354  LNQMYE  359


>sp|Q5Z6G5|RH35B_ORYSJ DEAD-box ATP-dependent RNA helicase 35B 
OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0697200 PE=3 
SV=1
Length=619

 Score = 150 bits (378),  Expect = 9e-37, Method: Compositional matrix adjust.
 Identities = 110/336 (33%), Positives = 164/336 (49%), Gaps = 60/336 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDN---PKLRELLIIGGVAARDQLSVLENGVDIV  343
            P  LIV PSRELA QT   I+ F   +     P++R LL IGGV  R Q+ V++ GV IV
Sbjct  250  PFGLIVCPSRELARQTHEVIEMFLAPLMEAGYPEIRPLLCIGGVDMRTQMEVVKKGVHIV  309

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            V TPGRL DL+S  K+NL   R+L LDEAD L+  G+ D I  + +          + Q 
Sbjct  310  VATPGRLKDLLSKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF------KAQRQT  363

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            ++ SAT        + EKI +F               V  ++V V         R G ++
Sbjct  364  LLFSAT--------MPEKIQNFAKSA----------LVKPIIVNVG--------RAGAAN  397

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
            +   DV             E   E  +I+   Y +  +++      ++FC  K D D ++
Sbjct  398  L---DV---------IQEVEYVKEEARII---YLLECLQKTP-PPVLVFCEHKADVDYIQ  441

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
            ++ + +G            V +HG +   ERK   + FK  +   L+ TDVA++G+DI  
Sbjct  442  EFLLLKG---------VEAVAIHGGKDDEERKDAFKSFKASEKDVLVATDVASKGLDIPD  492

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            + +VIN  +P E +NYVHRIGR GR  + G+A + +
Sbjct  493  IQHVINYDMPAEIENYVHRIGRTGRRGKTGVATTFI  528


 Score = 38.9 bits (89),  Expect = 0.18, Method: Compositional matrix adjust.
 Identities = 18/37 (49%), Positives = 25/37 (68%), Gaps = 0/37 (0%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            PT IQ + +P+ L G D++  A TGSGKT  F +P+I
Sbjct  196  PTPIQVQGLPVALSGRDMIGIAFTGSGKTLVFVLPLI  232


>sp|B4F1V3|RHLB_PROMH ATP-dependent RNA helicase RhlB OS=Proteus 
mirabilis (strain HI4320) OX=529507 GN=rhlB PE=3 SV=1
Length=432

 Score = 146 bits (369),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 109/339 (32%), Positives = 169/339 (50%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +   +  ++  L  GG    +QL VL NGVDIV+
Sbjct  83   NQPRALIMAPTRELAVQIYTDAQPLAQ---STGVKMGLAYGGDGYDEQLKVLNNGVDIVI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D V  G +NL+ ++ +VLDEAD +   G+   I  +  ++P      +R+ ++
Sbjct  140  GTTGRLIDYVKQGHINLNAIQVVVLDEADRMYDLGFIKDIRWLFRRMPNA---AERMNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+ P +V+++ E     ++   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNPEYVEVEPEQKTGFSIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   ++ IIF  TK  CD++ 
Sbjct  251  -------------------------------------IEEEWPERCIIFANTKHRCDDIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +           GH+     L GD    +R + LE F +G++  L+ TDVAARG+ I  
Sbjct  274  AHLAAD-------GHRVG--LLTGDVPQKKRLRILEDFTQGNIDILVATDVAARGLHIPS  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA + G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGKSGNSISLACEE  363


 Score = 43.1 bits (100),  Expect = 0.009, Method: Compositional matrix adjust.
 Identities = 20/53 (38%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++P+ + G D+   A+TG+GKT AF
Sbjct  11  FSDFALHPKVIEALEKKGFSNCTQIQALTLPITVKGHDIAGQAQTGTGKTLAF  63


>sp|Q9LUW6|RH9_ARATH DEAD-box ATP-dependent RNA helicase 9, mitochondrial 
OS=Arabidopsis thaliana OX=3702 GN=RH9 PE=1 SV=1
Length=610

 Score = 149 bits (377),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 163/331 (49%), Gaps = 61/331 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+ L++ P+RELA Q     K+F++    P L  + + GG     Q+  L  G+D+ VGT
Sbjct  191  PQCLVLAPTRELARQVE---KEFRE--SAPSLDTICLYGGTPIGQQMRELNYGIDVAVGT  245

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGR+ DL+  G LNLS+V+F+VLDEAD +L  G+++ +  +  ++P      KR Q ++ 
Sbjct  246  PGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLP-----AKR-QSMMF  299

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT+ S+ ++ L++K ++ P  +DL G+                   +L + +    I  
Sbjct  300  SATMPSW-IRSLTKKYLNNPLTIDLVGDSD----------------QKLADGITMYSIAA  342

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH-KMDQAIIFCRTKIDCDNLEQY  525
            D         P                       +KEH K  + I+F +TK D D L   
Sbjct  343  DSYGRASIIGP----------------------LVKEHGKGGKCIVFTQTKRDADRLAFG  380

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
              +           + C  LHGD    +R++ L  F+ G+   L+ TDVAARG+D+  V 
Sbjct  381  LAK----------SYKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVD  430

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAI  616
             VI+  LP+  + +VHR GR GRA + G AI
Sbjct  431  LVIHYELPNNTETFVHRTGRTGRAGKKGSAI  461


 Score = 39.7 bits (91),  Expect = 0.11, Method: Compositional matrix adjust.
 Identities = 23/61 (38%), Positives = 38/61 (62%), Gaps = 4/61 (7%)

Query  3    AFSEMGVMPEIAQAVEE--MDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            A +++G+ PEI +A++   ++ L P  IQ   +   + G D++  A TG+GKT AF IP+
Sbjct  117  AIADLGISPEIVKALKGRGIEKLFP--IQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPI  174

Query  61   I  61
            I
Sbjct  175  I  175


>sp|Q4WH83|DBP3_ASPFU ATP-dependent RNA helicase dbp3 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=dbp3 PE=3 SV=1
Length=503

 Score = 147 bits (372),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 114/345 (33%), Positives = 159/345 (46%), Gaps = 63/345 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P A+I+ P+RELA Q  + + +F   +D   +R   I GGV   +Q   L+    IVV T
Sbjct  160  PAAVIISPTRELAMQIYDQLSKFGASVD---IRVTCIYGGVKKDEQREALKTAA-IVVAT  215

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL DL   G ++L +V++LVLDEAD +L +G+   I  +    P  T      Q ++ 
Sbjct  216  PGRLKDLKDDGSVDLGKVKYLVLDEADRMLDKGFEQDIKDIIRSTPDSTR-----QTVMF  270

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVP----DTVHHVVVPVNP--KTDRLWERLG  460
            +AT     V+ L+   M     V + G+ S        +  VV  V P  K  RL + L 
Sbjct  271  TATWPP-SVRDLAASFMTSAVTVTIGGDPSADPRANTRIKQVVEVVKPQEKEARLVQLLS  329

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
            +S             R  A                           D+ ++FC  K +  
Sbjct  330  RSQ------------RGAAVG-------------------------DKVLVFCLYKKEAV  352

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             +E+           +   F    +HGD   HER ++LE FK G    L+ TDVAARG+D
Sbjct  353  RVERLL---------RSKNFKVAGIHGDLNQHERFKSLEAFKTGSATVLVATDVAARGLD  403

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            I  V  VINVT P   ++YVHRIGR GRA   G AI+L  TE +K
Sbjct  404  IPSVKLVINVTFPLTVEDYVHRIGRTGRAGADGHAITLF-TEADK  447


 Score = 49.3 bits (116),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 3/83 (4%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTG  84
            PT IQ+ + PL+  G DV+  AETGSGKT AF +P I+ + ++ K +++  +    I   
Sbjct  108  PTPIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCIKKILDSGKVKRKHARPAAVI---  164

Query  85   ASVLNKWQMNPYDRGSAFAIGSD  107
             S   +  M  YD+ S F    D
Sbjct  165  ISPTRELAMQIYDQLSKFGASVD  187


>sp|Q6FLF3|DBP2_CANGA ATP-dependent RNA helicase DBP2 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP2 PE=3 SV=1
Length=544

 Score = 148 bits (374),  Expect = 2e-36, Method: Compositional matrix adjust.
 Identities = 108/351 (31%), Positives = 167/351 (48%), Gaps = 61/351 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  L++ P+RELA Q      +F K   + ++R   + GGV    Q+  L  G +IV+
Sbjct  182  DGPIVLVLAPTRELAVQIQKECSKFGK---SSRIRNTCVYGGVPRGQQIRELIRGAEIVI  238

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D++  GK NL +V +LVLDEAD +L  G+   I ++ +QI          Q +
Sbjct  239  ATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQI------RPDRQTL  292

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKG-EDSVPDTVHHVVVPVNP--KTDRLWERLGK  461
            + SAT    +V++L+   ++ P  V +   E +    +  +V  V+   K DRL + L  
Sbjct  293  MWSATWPK-EVQQLARDYLNDPIQVQIGSLELAASHNITQLVEVVSEFEKRDRLVKHL--  349

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
                  D  ++D                            KE K+   +IF  TK  CD 
Sbjct  350  ------DTASQD----------------------------KESKI---LIFASTKRTCDE  372

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            +  Y  Q G         +  + +HGD+   ER   L  F+ G+   ++ TDVAARGID+
Sbjct  373  ITSYLRQDG---------WPALAIHGDKDQRERDWVLNEFRTGNSPIMVATDVAARGIDV  423

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
             G+ +V+N  +P   ++YVHRIGR GRA   G AIS    + + +   + S
Sbjct  424  KGINFVVNYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEDNKSLGASLIS  474


 Score = 39.7 bits (91),  Expect = 0.10, Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 0/61 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E G    + + V+   +  PT IQ +  P+ L G D++  A TGSGKT ++ +P 
Sbjct  109  ITTFDEAGFPDYVLKEVKAEGFDKPTSIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPG  168

Query  61   I  61
            I
Sbjct  169  I  169


>sp|Q1DTB3|FAL1_COCIM ATP-dependent RNA helicase FAL1 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=FAL1 PE=3 SV=2
Length=399

 Score = 145 bits (365),  Expect = 2e-36, Method: Compositional matrix adjust.
 Identities = 106/340 (31%), Positives = 161/340 (47%), Gaps = 60/340 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+RELA Q  N I     Y++   ++    IGG    D +  L++G  +V GTP
Sbjct  95   QALVLSPTRELATQIQNVIMAVGDYMN---VQCHACIGGTNVGDDIRKLDHGQHVVSGTP  151

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++ LVLDEAD LL++G+ + I  ++  +P  T      QV+V S
Sbjct  152  GRVADMIRRRHLRTRHIKMLVLDEADDLLARGFREQIYDVYRYLPPAT------QVVVLS  205

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL  +DV  ++ K M  P  + +K ++   + +    + V                   
Sbjct  206  ATL-PYDVLSMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEK-----------------  247

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W      L   Y    I      QA+IFC T+   D L     
Sbjct  248  ---------------EEWK--FDTLCDLYDTLTIT-----QAVIFCNTRRKVDWL-----  280

Query  528  QQGGGPDK-KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                  DK +   F+   +HG+    ER   ++ F++G+ R LI TDV ARGID+  V  
Sbjct  281  -----TDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSL  335

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
            VIN  LP  ++NY+HRIGR GR  R G+AI+ V +E  ++
Sbjct  336  VINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRI  375


 Score = 42.7 bits (99),  Expect = 0.009, Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 39/70 (56%), Gaps = 0/70 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +M +   + + +    +  P+ IQ+ +I  I  G D +  A++G+GKT  F+I ++Q
Sbjct  26  TFDDMHLKENLLRGIYAYGFESPSAIQSRAIVQICKGRDTIAQAQSGTGKTATFAISILQ  85

Query  63  IVYETLKDQQ  72
           ++   L++ Q
Sbjct  86  VIDTALRETQ  95


>sp|P42305|DBPA_BACSU ATP-dependent RNA helicase DbpA OS=Bacillus 
subtilis (strain 168) OX=224308 GN=dbpA PE=1 SV=2
Length=479

 Score = 146 bits (369),  Expect = 2e-36, Method: Compositional matrix adjust.
 Identities = 107/339 (32%), Positives = 156/339 (46%), Gaps = 65/339 (19%)

Query  285  NAPKALIVEPSRELAEQT---LNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVD  341
            N P+ALI+ P+RELA Q    + NI +FK+      ++   + G  +   Q + L+    
Sbjct  69   NKPQALILTPTRELAVQVKEDITNIGRFKR------IKATAVFGKSSFDKQKAELKQKSH  122

Query  342  IVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL  401
            IVVGTPGR+ D +  G L L ++ +LV+DEAD +L+ G+ + +  +   +P   +     
Sbjct  123  IVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERT-----  177

Query  402  QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK  461
              ++ SATL   D++KLS + M  P  +++K        + H V+ V         R   
Sbjct  178  -TMLFSATLPQ-DIEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQV---------REEN  226

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
                  DV   +N                                D  IIFCRTK   + 
Sbjct  227  KFSLLKDVLMTENP-------------------------------DSCIIFCRTKEHVNQ  255

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            L       G         + C  +HG     +R   +  FK+G+ R+L+ TDVAARGIDI
Sbjct  256  LTDELDDLG---------YPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDI  306

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
              +  VIN  LP EK++YVHR GR GRA   G AIS V 
Sbjct  307  ENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVT  345


 Score = 46.6 bits (109),  Expect = 7e-04, Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 0/63 (0%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           M+ F    +  +I +A+E + +  PT +Q   IP  L   D+++ ++TGSGKT +F IP+
Sbjct  1   MSHFKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPL  60

Query  61  IQI  63
            ++
Sbjct  61  CEL  63


>sp|Q75HJ0|RH37_ORYSJ DEAD-box ATP-dependent RNA helicase 37 OS=Oryza 
sativa subsp. japonica OX=39947 GN=PL10A PE=2 SV=1
Length=637

 Score = 149 bits (375),  Expect = 2e-36, Method: Compositional matrix adjust.
 Identities = 110/336 (33%), Positives = 159/336 (47%), Gaps = 56/336 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P ALI+ P+REL+ Q     ++ +K+     +R ++  GG     QL  LE GV+I+V T
Sbjct  253  PLALILSPTRELSVQIH---EEARKFAYQTGVRVVVAYGGAPIHQQLRELERGVEILVAT  309

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL DL+   +++L  V++L LDEAD +L  G+   I ++  Q+  +   G R Q ++ 
Sbjct  310  PGRLMDLLERARVSLQMVKYLALDEADRMLDMGFEPQIRKIVEQM-DMPPRGVR-QTMLF  367

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT               FP  +     D + D +   V  V   TD + +R+       
Sbjct  368  SAT---------------FPKEIQRMASDFLADYIFLAVGRVGSSTDLIAQRV-------  405

Query  467  DDVHAKDNTRPGANSPEMWSEAIK---ILKGEYAVRAIKEH-KMDQAIIFCRTKIDCDNL  522
                            E   EA K   ++   +A +A   H K    ++F  TK   D L
Sbjct  406  ----------------EFVLEADKRSYLMDLLHAQKANGTHGKQALTLVFVETKRGADAL  449

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
            E +    G         F    +HGDR   ER+  L  FK G    L+ TDVAARG+DI 
Sbjct  450  ENWLYTNG---------FPATSIHGDRTQQEREYALRSFKSGATPILVATDVAARGLDIP  500

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
             V +VIN  LP++  +YVHRIGR GRA + GLA + 
Sbjct  501  HVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAF  536


 Score = 48.1 bits (113),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 47/86 (55%), Gaps = 2/86 (2%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+E+ +   + + +    ++ PT +Q  +IP+ + G D++  A+TGSGKT AF  P+I  
Sbjct  176  FAEIDLGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIISG  235

Query  64   VYETLKDQQEGKKGKTTIKTGASVLN  89
            +  +   Q+   +G  T    A +L+
Sbjct  236  IMSSRPPQR--PRGSRTAYPLALILS  259


>sp|Q6CX73|FAL1_KLULA ATP-dependent RNA helicase FAL1 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=FAL1 PE=3 SV=1
Length=398

 Score = 144 bits (364),  Expect = 2e-36, Method: Compositional matrix adjust.
 Identities = 122/426 (29%), Positives = 187/426 (44%), Gaps = 74/426 (17%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDG--YI  266
            D  L F+    +K  A F +  LK   L+  + +G   F++P      A+S+   G   I
Sbjct  8    DSKLKFKTSKKLKVSATFESMNLKPDLLRGIYFYG---FEYPSSIQSRAISQIISGKDVI  64

Query  267  VKSQHSGNAQVTQTKFLPNAP-------KALIVEPSRELAEQTLNNIKQFKKYIDNPKLR  319
             ++Q       T T  L  A        +AL++ P+RELA Q+ + I     Y++   + 
Sbjct  65   AQAQSGTGKTATFTIGLLQAIDSKSKELQALVLSPTRELASQSESVISNLGDYLN---VT  121

Query  320  ELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQ-  378
                 GG A +  +  +     +V GTPGR+ D++    LN+   + LVLDEAD LL + 
Sbjct  122  AHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGET  181

Query  379  -GYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSV  437
             G+   I  +  ++P        +QV+V SAT+ S D+ ++++K M  P  + +K ++  
Sbjct  182  LGFKQQIYDIFTKLPPT------IQVVVVSATM-SKDILEITKKFMSDPVKILVKRDEIS  234

Query  438  PDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYA  497
             D +    V V                                  E W       K +  
Sbjct  235  LDVIKQYYVDVEK--------------------------------EEW-------KFDTL  255

Query  498  VRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQN  557
                    + Q +IFC T+   D L +   Q           FS   +HGD K  ER Q 
Sbjct  256  CDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTN---------FSVSSMHGDMKQEERDQV  306

Query  558  LERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAIS  617
            +  F+ G  R LI TDV ARGID+  +  VIN  +PD  +NY+HRIGR GR  R G+AI+
Sbjct  307  MNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAIN  366

Query  618  LVATEK  623
             +  E+
Sbjct  367  FITKEE  372


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 22/71 (31%), Positives = 41/71 (58%), Gaps = 0/71 (0%)

Query  2   AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
           A F  M + P++ + +    +  P+ IQ+ +I  I+ G DV+  A++G+GKT  F+I ++
Sbjct  23  ATFESMNLKPDLLRGIYFYGFEYPSSIQSRAISQIISGKDVIAQAQSGTGKTATFTIGLL  82

Query  62  QIVYETLKDQQ  72
           Q +    K+ Q
Sbjct  83  QAIDSKSKELQ  93


>sp|P33906|DEAD_KLEPN ATP-dependent RNA helicase DeaD OS=Klebsiella 
pneumoniae OX=573 GN=deaD PE=3 SV=3
Length=643

 Score = 149 bits (375),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 106/346 (31%), Positives = 163/346 (47%), Gaps = 58/346 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
             AP+ L++ P+RELA Q    + +F K++    +  + + GG     QL  L  G  IVV
Sbjct  73   RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNV--VALYGGQRYDVQLRALRQGPQIVV  130

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GTPGRL D +  G L+LS++  LVLDEAD +L  G+ + +  +  QIP+        Q  
Sbjct  131  GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH------QTA  184

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT+    +++++ + M  P  V                                   
Sbjct  185  LFSATMPEA-IRRITRRFMKEPQEVR----------------------------------  209

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                + +   TRP   S   W+ A  + K E  VR ++    D AIIF RTK     + +
Sbjct  210  ----IQSSVTTRPDI-SQSYWT-AYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAE  263

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
               + G         ++   L+GD     R+Q LER K G +  LI TDVAARG+D+  +
Sbjct  264  ALERNG---------YNSAALNGDMNQALREQALERLKDGRLDILIATDVAARGLDVERI  314

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
              V+N  +P + ++YVHRIGR GRA R G A+  V   + ++  ++
Sbjct  315  SLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI  360


 Score = 58.9 bits (141),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 46/69 (67%), Gaps = 0/69 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F+++G+   I +A+ ++ +  P+ IQAE IP +L G DVL  A+TGSGKT AFS+P++  
Sbjct  8   FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNN  67

Query  64  VYETLKDQQ  72
           +   L+  Q
Sbjct  68  IDPELRAPQ  76


>sp|Q6Z4K6|RH52B_ORYSJ DEAD-box ATP-dependent RNA helicase 52B 
OS=Oryza sativa subsp. japonica OX=39947 GN=PL10B PE=2 SV=1
Length=638

 Score = 149 bits (375),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 111/360 (31%), Positives = 169/360 (47%), Gaps = 66/360 (18%)

Query  266  IVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
            I++S+    ++ ++T +    P ALI+ P+REL+ Q     ++ +K+     ++ ++  G
Sbjct  231  IMRSRPPPRSRGSRTAY----PLALILSPTRELSVQIH---EEARKFAYQTGVKVVVAYG  283

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            G     QL  LE GV+I+V TPGRL DL+   +++L  +++L LDEAD +L  G+   I 
Sbjct  284  GAPITQQLRELERGVEILVATPGRLMDLLERARVSLQMIKYLALDEADRMLDMGFEPQIR  343

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
            ++  Q+  +   G+R Q ++ SAT               FP  +     D + D +   V
Sbjct  344  KIVEQM-DMPPRGER-QTMLFSAT---------------FPKEIQRMASDFLADYIFLAV  386

Query  446  VPVNPKTDRLWERL------GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVR  499
              V   TD + +R+       K     D +HA+                          R
Sbjct  387  GRVGSSTDLIVQRVEFVLDADKRSYLMDLLHAQ--------------------------R  420

Query  500  AIKEH-KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNL  558
            A   H K    ++F  TK   D LE +    G         F    +HGDR   ER+  L
Sbjct  421  ANGTHGKQALTLVFVETKRGADALENWLYNNG---------FPATSIHGDRTQQEREYAL  471

Query  559  ERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
              FK G    L+ TDVAARG+DI  V +VIN  LP++  +YVHRIGR GRA + GLA + 
Sbjct  472  RSFKSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAF  531


 Score = 47.0 bits (110),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 0/58 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            F+E+ +   + + +    ++ PT +Q  +IP+ + G D++  A+TGSGKT AF  P+I
Sbjct  171  FAEIDLGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPII  228


>sp|Q4P184|FAL1_USTMA ATP-dependent RNA helicase FAL1 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=FAL1 PE=3 SV=1
Length=397

 Score = 144 bits (364),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 122/430 (28%), Positives = 189/430 (44%), Gaps = 80/430 (19%)

Query  208  NGKDLGLAFEIPPHMKNQALFPACVLKNAELK----FNFG-----EEEFKFPPKDGFVAL  258
            N  D  LAFE   H+K    F A  LK   L+    +NF      ++    P   G   +
Sbjct  6    NAGDSKLAFESSEHVKVATTFDAMGLKEDLLRGIYAYNFEKPSAIQQRAILPIIRGRDVI  65

Query  259  SKAPDG------YIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKY  312
            ++A  G      + +    S +  + +T+       AL++ P+RELA Q  + +     Y
Sbjct  66   AQAQSGTGKTATFSISMLQSIDTTLRETQ-------ALVLSPTRELAIQIQSVVLALGDY  118

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
            ++   ++    IGG +  + +  L+ G  IV GTPGR+ D++    L    ++ L+LDE+
Sbjct  119  LN---VQCHACIGGTSVGEDIRKLDYGQHIVSGTPGRVYDMIRRRHLRTKNIKMLILDES  175

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D LL+ G+ D I  ++  +P  T      QV++ SATL   DV +++ K M  P  + +K
Sbjct  176  DELLNMGFKDQIYDVYRYLPPST------QVVLLSATLPQ-DVLEMTSKFMTDPVRILVK  228

Query  433  GEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKIL  492
             ++   + +    V V                                  E W      L
Sbjct  229  RDELTLEGIKQFFVAVEK--------------------------------EEWK--FDTL  254

Query  493  KGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPH  552
               Y    I      QA+IFC T+   D L             K + F    +HG+ +  
Sbjct  255  CDLYDTLTIT-----QAVIFCNTRRKVDWL---------SAKMKENNFQVSSMHGEMQQK  300

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM  612
            ER + +  F++G  R LI TDV ARGIDI  +  VIN  LP  ++NY+HRIGR GR  R 
Sbjct  301  ERDEVMAEFRQGSSRVLITTDVWARGIDIANISLVINYDLPTNRENYIHRIGRSGRFGRK  360

Query  613  GLAISLVATE  622
            G+AI+ V  +
Sbjct  361  GVAINFVTVD  370


 Score = 48.1 bits (113),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 0/71 (0%)

Query  2   AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             F  MG+  ++ + +   ++  P+ IQ  +I  I+ G DV+  A++G+GKT  FSI ++
Sbjct  24  TTFDAMGLKEDLLRGIYAYNFEKPSAIQQRAILPIIRGRDVIAQAQSGTGKTATFSISML  83

Query  62  QIVYETLKDQQ  72
           Q +  TL++ Q
Sbjct  84  QSIDTTLRETQ  94


>sp|Q5VQL1|RH14_ORYSJ DEAD-box ATP-dependent RNA helicase 14 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os01g0172200 PE=2 
SV=1
Length=708

 Score = 149 bits (376),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 159/344 (46%), Gaps = 63/344 (18%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  L++ P+RELA Q  +  K+F +   + ++  + + GG     QL  LE G DIVV
Sbjct  251  DGPTVLVLSPTRELATQIQDEAKKFGR---SSRISSVCLYGGAPKGPQLRDLERGADIVV  307

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL+D++   +++L QV +LVLDEAD +L  G+   I ++  Q+        + Q +
Sbjct  308  ATPGRLNDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQV------QPKRQTL  361

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSV---PDTVHHVVVPVNPKTDRLWERLGK  461
            + +AT    +V+K++  ++  P  V++   D +        +V V   P+  R  +++ +
Sbjct  362  MFTATWPK-EVRKIASDLLSNPVQVNIGNTDQLVANKSITQYVDVITPPEKSRRLDQILR  420

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
            S              PG+                            + IIFC TK  CD 
Sbjct  421  SQ------------EPGS----------------------------KIIIFCSTKRMCDQ  440

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            L +              Q+    +HGD+   ER   L  F+ G    L+ TDVAARG+DI
Sbjct  441  LARNL----------ARQYGASAIHGDKSQAERDSVLSEFRSGRCPILVATDVAARGLDI  490

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
              +  V+N   P   ++YVHRIGR GRA   G+A +    +  K
Sbjct  491  KDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSK  534


 Score = 49.7 bits (117),  Expect = 8e-05, Method: Compositional matrix adjust.
 Identities = 24/56 (43%), Positives = 34/56 (61%), Gaps = 0/56 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
            F   G  PEI + V++  +  PT IQA+S P+ L   D++  A+TGSGKT  + IP
Sbjct  182  FQSTGFPPEILREVQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIP  237


>sp|Q2GWJ5|FAL1_CHAGB ATP-dependent RNA helicase FAL1 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=FAL1 PE=3 SV=1
Length=394

 Score = 144 bits (363),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 117/424 (28%), Positives = 180/424 (42%), Gaps = 66/424 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
            D  + F     +     F +  LK + L+  + +G E          V + K  D     
Sbjct  12   DEKIQFSTSKEVTVHPTFESMSLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQA  71

Query  269  SQHSGNAQVTQTKFLP------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
               +G         L          +AL++ P+RELA Q  + +     Y++   ++   
Sbjct  72   QSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALGDYMN---VQCHA  128

Query  323  IIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD  382
             IGG    + +  L+ G  IV GTPGR+ D++    L    ++ LVLDEAD LL+QG+ +
Sbjct  129  CIGGTNVGEDIRKLDYGQHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNQGFRE  188

Query  383  FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH  442
             I  ++  +P  T      QV+V SATL  +DV  ++ K M  P  + +K ++   + + 
Sbjct  189  QIYDVYRYLPPAT------QVVVVSATL-PYDVLDMTTKFMTDPVRILVKRDELTLEGLK  241

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
               + V                                  E W      L   Y    I 
Sbjct  242  QYFIAVEK--------------------------------EDWK--FDTLCDLYDTLTIT  267

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
                 QA+IFC T+   D L             +   F+   +HGD    ER   ++ F+
Sbjct  268  -----QAVIFCNTRRKVDWLTDKM---------REANFTVSSMHGDMPQKERDSIMQDFR  313

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            +G+ R LI TDV ARGID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V +E
Sbjct  314  QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSE  373

Query  623  KEKV  626
              ++
Sbjct  374  DVRI  377


 Score = 42.4 bits (98),  Expect = 0.015, Method: Compositional matrix adjust.
 Identities = 18/70 (26%), Positives = 38/70 (54%), Gaps = 0/70 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  M +   + + +    +  P+ +Q+ +I  I  G D +  A++G+GKT  FSI ++Q
Sbjct  28  TFESMSLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQ  87

Query  63  IVYETLKDQQ  72
           ++   +++ Q
Sbjct  88  VIDTAVRETQ  97


>sp|Q0CL13|DBP3_ASPTN ATP-dependent RNA helicase dbp3 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dbp3 
PE=3 SV=1
Length=493

 Score = 146 bits (369),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 112/345 (32%), Positives = 170/345 (49%), Gaps = 60/345 (17%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P  P A+I+ P+RELA Q  + +++F   +     +   I GGV   +Q  VL+   +IV
Sbjct  150  PYQPMAVIISPTRELAMQIHDQLQKFAGPVGA---KVACIFGGVRKDEQREVLKTA-NIV  205

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            V TPGRL DL + G ++L +VR+LVLDEAD +L +G+   I  +   +P       + Q 
Sbjct  206  VATPGRLKDLQNDGSVDLGKVRYLVLDEADRMLDKGFEQDIKDIIQPMPV-----SKRQT  260

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            ++ +AT     V++L+   M  P  V + G+ S            +P+            
Sbjct  261  VMFTATWPPV-VRELASTFMSSPVTVTIGGDPSA-----------DPRA-----------  297

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGE-YAVRAIKEHK--MDQAIIFCRTKIDCD  520
                      NTR      +   E +K  + E   V+ +K+H+   ++ + FC  K +  
Sbjct  298  ----------NTRI-----KQVVEVVKPHEKEGRLVQLLKQHQRGAEKVLAFCLYKKEAT  342

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             +E++   +G         F    +HGD    ER ++L+ FK G    L+ TDVAARG+D
Sbjct  343  RIERFLQSRG---------FKVAGIHGDLSQQERFRSLDAFKTGAATVLVATDVAARGLD  393

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            I  V  VINVT P   ++YVHRIGR GRA   G AI+L  TE +K
Sbjct  394  IPAVKLVINVTFPLTVEDYVHRIGRTGRAGAEGHAITLF-TETDK  437


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 21/37 (57%), Positives = 27/37 (73%), Gaps = 0/37 (0%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            PT IQ+ + PL+ GG DV+  AETGSGKT AF +P +
Sbjct  101  PTSIQSATWPLLFGGRDVIGIAETGSGKTLAFGLPCL  137


>sp|Q8Y7M8|DBPA_LISMO ATP-dependent RNA helicase DbpA OS=Listeria 
monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) 
OX=169963 GN=dbpA PE=2 SV=1
Length=470

 Score = 145 bits (367),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 131/416 (31%), Positives = 181/416 (44%), Gaps = 108/416 (26%)

Query  279  QTKFLPNAPKALIVEPSRELAEQT---LNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
            Q ++  N P+ALI+ P+RELA Q      NI +FK+      ++   I G      Q   
Sbjct  60   QVEWEENKPQALIIVPTRELAMQVKTECTNIGRFKR------VKAAAIYGQSPFAKQKLE  113

Query  336  LENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
            L     IVVGTPGRL D +  G LN+ +V  LVLDE D +LS G+ D +  + +++P   
Sbjct  114  LSQKNHIVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLP---  170

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL  455
               K+ Q +  SAT+   +++ L ++    P  +++  E + P  + HV +  + K   L
Sbjct  171  ---KQRQNLFFSATMPE-EMQDLIKRYQDNPMVIEMASEKTNP--IFHVEMQTDNKEKTL  224

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRT  515
                        DV   +N                                D AIIFC T
Sbjct  225  -----------KDVLITENP-------------------------------DSAIIFCNT  242

Query  516  KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA  575
            K   D L           D K  +     +HG  +  +R + ++ FK G  RFLI TDVA
Sbjct  243  KNQVDELTDLL-------DVKASK-----IHGGLRQEDRFRAMDDFKSGKSRFLIATDVA  290

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRG  635
             RGID+  V  VIN  LP EK+NYVHRIGR GRA + G AIS V T              
Sbjct  291  GRGIDVDNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKT--------------  336

Query  636  KGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEP----DIKVPVDEFDGK  687
                              NE  LL +IEE L+ TI +       ++KV  D F  K
Sbjct  337  ------------------NENPLLRDIEEMLDVTIEKKRKPTVIEVKVNEDAFRKK  374


 Score = 50.1 bits (118),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 25/61 (41%), Positives = 39/61 (64%), Gaps = 1/61 (2%)

Query  12  EIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI-QIVYETLKD  70
           EI +A+ E+ +   T +Q   IP+ L G D++  ++TGSGKT AF+IP+  Q+ +E  K 
Sbjct  9   EIKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIPIAEQVEWEENKP  68

Query  71  Q  71
           Q
Sbjct  69  Q  69


>sp|Q9P735|FAL1_NEUCR ATP-dependent RNA helicase fal-1 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=fal-1 PE=3 SV=2
Length=400

 Score = 144 bits (363),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 120/426 (28%), Positives = 189/426 (44%), Gaps = 70/426 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
            D  + F     +     F +  LK + L+  + +G E          V + K  D  I +
Sbjct  11   DEKIQFSTSKEVTVHPTFESMSLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDT-IAQ  69

Query  269  SQH----SGNAQVTQTKFLPNAPK---ALIVEPSRELAEQTLNNIKQFKKYIDNPKLREL  321
            +Q     +    ++  + +  A +   AL++ P+RELA Q  + +     Y++   ++  
Sbjct  70   AQSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALGDYMN---VQCH  126

Query  322  LIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYS  381
              IGG    + +  L+ G  IV GTPGR+ D++    L    ++ LVLDEAD LL+QG+ 
Sbjct  127  ACIGGTNVGEDIRKLDYGQHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNQGFR  186

Query  382  DFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV  441
            + I  ++  +P  T      QV+V SATL  +DV  ++ K M  P  + +K ++   + +
Sbjct  187  EQIYDVYRYLPPAT------QVVVVSATL-PYDVLDMTTKFMTDPVRILVKRDELTLEGL  239

Query  442  HHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI  501
                + V                                  E W      L   Y    I
Sbjct  240  KQYFIAVEK--------------------------------EDWK--FDTLCDLYDTLTI  265

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDK-KGHQFSCVCLHGDRKPHERKQNLER  560
                  QA+IFC T+   D L           DK +   F+   +HGD    ER   ++ 
Sbjct  266  T-----QAVIFCNTRRKVDWL----------TDKMREANFTVSSMHGDMPQKERDSIMQD  310

Query  561  FKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            F++G+ R LI TDV ARGID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V 
Sbjct  311  FRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVT  370

Query  621  TEKEKV  626
            +E  ++
Sbjct  371  SEDVRI  376


 Score = 42.0 bits (97),  Expect = 0.018, Method: Compositional matrix adjust.
 Identities = 18/70 (26%), Positives = 38/70 (54%), Gaps = 0/70 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  M +   + + +    +  P+ +Q+ +I  I  G D +  A++G+GKT  FSI ++Q
Sbjct  27  TFESMSLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQ  86

Query  63  IVYETLKDQQ  72
           ++   +++ Q
Sbjct  87  VIDTAVRETQ  96


>sp|A5DWJ1|FAL1_LODEL ATP-dependent RNA helicase FAL1 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=FAL1 PE=3 SV=1
Length=399

 Score = 144 bits (363),  Expect = 4e-36, Method: Compositional matrix adjust.
 Identities = 104/333 (31%), Positives = 159/333 (48%), Gaps = 58/333 (17%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+RELA Q  N IK    Y++   ++    IGG      +  L+ G  IV GTP
Sbjct  96   QALVLSPTRELATQIQNVIKHLGDYMN---IQTYACIGGKNVGTDIKRLQQGQQIVSGTP  152

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L+   ++ L+LDEAD L ++G+ + I  ++  +P        +QV+V S
Sbjct  153  GRVLDVIKRRNLSTRHIKMLILDEADELFTKGFKEQIYEIYKHLP------PGVQVVVVS  206

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL + +V +++ K    P  + +K E+     +    +    K D  ++ L   +    
Sbjct  207  ATL-THEVLEMTGKFTTDPVKILVKREEVSLSGIKQYYIQCE-KEDWKFDTLCDLY----  260

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                 DN                               + QA+IFC TKI  + L     
Sbjct  261  -----DNL-----------------------------TITQAVIFCNTKIKVNWLTDQMR  286

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
            +Q          F+ V +HGD K  ER   +  F+ G+ R LI TDV ARGID+  +  V
Sbjct  287  KQN---------FTVVAMHGDMKQEERDAIMNDFRSGNSRVLISTDVWARGIDVQQISLV  337

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            IN  LP +K+NY+HRIGR GR  R G AI+L+ 
Sbjct  338  INYDLPLDKENYIHRIGRSGRFGRKGTAINLLT  370


 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 19/62 (31%), Positives = 37/62 (60%), Gaps = 0/62 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  M + PE+ + +    +  P+ IQ+ +I  I+ G D +  A++G+GKT  FSI +++
Sbjct  27  TFESMRLKPELLKGIYAYGFEAPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLE  86

Query  63  IV  64
           ++
Sbjct  87  VL  88


>sp|Q9C551|RH5_ARATH DEAD-box ATP-dependent RNA helicase 5 OS=Arabidopsis 
thaliana OX=3702 GN=RH5 PE=1 SV=1
Length=537

 Score = 146 bits (369),  Expect = 5e-36, Method: Compositional matrix adjust.
 Identities = 105/336 (31%), Positives = 170/336 (51%), Gaps = 68/336 (20%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P  L++ P+RELA Q  + +++  +      L+ + + GG +   Q+S + +GVDIV+GT
Sbjct  192  PTCLVLSPTRELAVQISDVLREAGEPCG---LKSICVYGGSSKGPQISAIRSGVDIVIGT  248

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL DL+ +  L LS V F+VLDEAD +L  G+ + +  +      +++  K  Q+++ 
Sbjct  249  PGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFI------LSNTNKVRQMVMF  302

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH---  463
            SAT    DV KL+++ M              P+ +  ++  V+         L  +H   
Sbjct  303  SATW-PLDVHKLAQEFMD-------------PNPIKVIIGSVD---------LAANHDVM  339

Query  464  --IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM--DQAIIFCRTKIDC  519
              I   D  A+D               I +L+        K HK   ++ ++F   K++ 
Sbjct  340  QIIEVLDERARDQ------------RLIALLE--------KYHKSQKNRVLVFALYKVEA  379

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            + LE++  Q+G         +  V +HG++   ER ++L  FK+G    L+ TDVAARG+
Sbjct  380  ERLERFLQQRG---------WKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGL  430

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLA  615
            DI  V  VIN T P   ++YVHRIGR GRA + G+A
Sbjct  431  DIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVA  466


 Score = 41.2 bits (95),  Expect = 0.038, Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 31/52 (60%), Gaps = 0/52 (0%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKK  76
            P+ IQ+ + P +L G D++  A+TGSGKT AF IP I  V +  K    G K
Sbjct  137  PSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSK  188


>sp|Q9LYJ9|RH46_ARATH DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis 
thaliana OX=3702 GN=RH46 PE=2 SV=2
Length=645

 Score = 148 bits (373),  Expect = 5e-36, Method: Compositional matrix adjust.
 Identities = 105/339 (31%), Positives = 160/339 (47%), Gaps = 57/339 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P  L++ P+RELA Q      +F K   + K+    + GG     QL  +E GVDIVV T
Sbjct  234  PTILVLSPTRELATQIQVEALKFGK---SSKISCACLYGGAPKGPQLKEIERGVDIVVAT  290

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL+D++   +++L QV +LVLDEAD +L  G+   I ++ N++P       + Q ++ 
Sbjct  291  PGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVP------TKRQTLMY  344

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            +AT    +V+K++  ++  P  V++   D +                       KS  +T
Sbjct  345  TATWPK-EVRKIAADLLVNPAQVNIGNVDEL--------------------VANKSITQT  383

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
             +V A           E  S   +IL+ +     I        IIFC TK  CD L +  
Sbjct  384  IEVLAPM---------EKHSRLEQILRSQEPGSKI--------IIFCSTKRMCDQLARNL  426

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
             +           F    +HGD+   ER   L +F+ G    L+ TDVAARG+D+  +  
Sbjct  427  TR----------TFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRV  476

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            V+N   P+  ++YVHRIGR GRA   GLA +    +  K
Sbjct  477  VVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAK  515


 Score = 40.0 bits (92),  Expect = 0.091, Method: Compositional matrix adjust.
 Identities = 20/59 (34%), Positives = 34/59 (58%), Gaps = 0/59 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
            + +F   G+  E+ + V    +  P+ IQA+S P+ +   D++  A+TGSGKT  + IP
Sbjct  160  LMSFEATGLPNELLREVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIP  218


>sp|Q5A4E2|DED1_CANAL ATP-dependent RNA helicase DED1 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DED1 
PE=3 SV=1
Length=672

 Score = 148 bits (373),  Expect = 5e-36, Method: Compositional matrix adjust.
 Identities = 105/342 (31%), Positives = 164/342 (48%), Gaps = 59/342 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P  L++ P+REL  Q     ++ KK+     +R  ++ GG     Q+  ++ G D++V T
Sbjct  270  PTILVMAPTRELVSQIY---EESKKFSYRSWVRACVVYGGADIGQQMRNMDRGCDLLVAT  326

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ--IPQVTSDGKRLQVI  404
            PGRL DL+  GK++L+ +R+LVLDEAD +L  G+   I  +  +  +P V    K  Q +
Sbjct  327  PGRLKDLLDRGKVSLANIRYLVLDEADRMLDMGFEPQIRYIVEECDMPAV----KDRQTL  382

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT               FP  + +   D + D V   V  V   ++ + +++     
Sbjct  383  MFSAT---------------FPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKI-----  422

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                ++ +D+        E  S  + +L       +  E+ +   I+F  TK   DNL  
Sbjct  423  ----LYVEDD--------EKKSVILDLL-------SANENGL--TIVFTETKRMADNLAD  461

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
            Y   QG         F    +HGDR  +ER++ L  FK G    L+ T VAARG+DI  V
Sbjct  462  YLYDQG---------FPATAIHGDRSQYEREKALAAFKNGAAPILVATAVAARGLDIPNV  512

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
             +VIN  LP +  +YVHRIGR GRA  +G+A +      + V
Sbjct  513  SHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNKNV  554


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 27/41 (66%), Gaps = 0/41 (0%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVY  65
            PT +Q  S+P++  G D++  A+TGSGKTG F  PV+   Y
Sbjct  209  PTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESY  249


>sp|Q4IF76|DBP2_GIBZE ATP-dependent RNA helicase DBP2 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=DBP2 PE=3 SV=2
Length=554

 Score = 147 bits (370),  Expect = 6e-36, Method: Compositional matrix adjust.
 Identities = 104/341 (30%), Positives = 170/341 (50%), Gaps = 55/341 (16%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  L++ P+RELA Q    +K+F +   + ++R   + GGV    Q+  L  GV++ +
Sbjct  208  DGPIVLVLAPTRELAVQIQEEMKKFGR---SSRIRNTCVYGGVPKGPQIRDLSRGVEVCI  264

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D++  GK NL +V +LVLDEAD +L  G+   I ++   I Q+  D    Q +
Sbjct  265  ATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKI---IGQIRPD---RQTL  318

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT               +P  V     D + D +   +  +          L  +H 
Sbjct  319  MWSAT---------------WPKEVRALASDFLQDFIQVNIGSME---------LAANHR  354

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
             T  V             E+ +E  K  +    +  + E+K ++ +IF  TK   D + +
Sbjct  355  ITQIV-------------EVVTEMEKRDRMIKHMEKVMENKENKILIFVGTKRVADEITR  401

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
             F++Q G P         + +HGD++ +ER   L++FK G    ++ TDVA+RGID+  +
Sbjct  402  -FLRQDGWP--------ALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNI  452

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
             +V+N   P+  ++Y+HRIGR GRA  MG AI+L  T+ +K
Sbjct  453  THVLNYDYPNNSEDYIHRIGRTGRAGAMGTAITLFTTDNQK  493


 Score = 42.7 bits (99),  Expect = 0.012, Method: Compositional matrix adjust.
 Identities = 23/59 (39%), Positives = 32/59 (54%), Gaps = 0/59 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             F E G    +   V+   +  PT IQ++  P+ L G DV+  AETGSGKT  + +P I
Sbjct  137  TFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPSI  195


>sp|A4QU31|FAL1_PYRO7 ATP-dependent RNA helicase FAL1 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=FAL1 PE=3 SV=1
Length=401

 Score = 143 bits (361),  Expect = 7e-36, Method: Compositional matrix adjust.
 Identities = 118/423 (28%), Positives = 188/423 (44%), Gaps = 70/423 (17%)

Query  214  LAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQH  271
            + F     +     F +  LK + L+  + +G E          V + K  D  I ++Q 
Sbjct  15   MEFTTSKEVTVHPTFESMALKESLLRGIYAYGYESPSAVQSRAIVQVCKGRDT-IAQAQS  73

Query  272  ----SGNAQVTQTKFLPNAPK---ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
                +    ++  + +  A +   AL++ P+RELA Q  + +     Y++   ++    I
Sbjct  74   GTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALGDYMN---VQCHACI  130

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG    + +  L+ G  IV GTPGR+ D++    L    ++ LVLDEAD LL+QG+ + I
Sbjct  131  GGTNVGEDIRKLDYGQHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNQGFREQI  190

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
              ++  +P  T      QV+V SATL  +DV  ++ K M  P  + +K ++   + +   
Sbjct  191  YDVYRYLPPAT------QVVVVSATL-PYDVLDMTTKFMTDPVRILVKRDELTLEGLKQY  243

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
             + +                                  E W      L   Y    I   
Sbjct  244  FIAIEK--------------------------------EDWK--FDTLCDLYDTLTIT--  267

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDK-KGHQFSCVCLHGDRKPHERKQNLERFKK  563
               QA+IFC T+   D L           DK +   F+   +HGD    ER   ++ F++
Sbjct  268  ---QAVIFCNTRRKVDWL----------TDKMREANFTVSSMHGDMPQKERDSIMQDFRQ  314

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
            G+ R LI TDV ARGID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V +E 
Sbjct  315  GNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSED  374

Query  624  EKV  626
             ++
Sbjct  375  VRI  377


 Score = 41.2 bits (95),  Expect = 0.027, Method: Compositional matrix adjust.
 Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 0/70 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  M +   + + +    +  P+ +Q+ +I  +  G D +  A++G+GKT  FSI ++Q
Sbjct  28  TFESMALKESLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQ  87

Query  63  IVYETLKDQQ  72
           ++   +++ Q
Sbjct  88  VIDTAVRETQ  97


>sp|A5DE68|FAL1_PICGU ATP-dependent RNA helicase FAL1 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=FAL1 PE=3 
SV=2
Length=397

 Score = 143 bits (361),  Expect = 7e-36, Method: Compositional matrix adjust.
 Identities = 105/335 (31%), Positives = 162/335 (48%), Gaps = 58/335 (17%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+RELA+Q  N I+    Y++   +R    IGG    + +  L+ G  I+ GTP
Sbjct  94   QALVLSPTRELAQQIENVIEHLGDYMN---VRSHACIGGTQVGEDVKKLQQGQHIISGTP  150

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    +    V+ LVLDEAD LL++G+ + I  ++  +P         QV+V S
Sbjct  151  GRVLDMIKRRNIMPRHVKMLVLDEADELLTKGFKEQIYEIYKTLPAGA------QVVVVS  204

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL + +V +++ K    P  + +K +D     +    +    K D  ++ L   +    
Sbjct  205  ATL-TPEVLEMTNKFTSDPVKILVKRDDVTLKGIKQYYIQCE-KEDWKFDTLCDLY----  258

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                 DN                               + QA+IFC TK   + L     
Sbjct  259  -----DNL-----------------------------TITQAVIFCNTKAKVNWL-----  279

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
                G  +K + F+   +HGD K  +R   ++ F+ G  R LI TDV ARGID+  V  V
Sbjct  280  ---AGQMRKSN-FTVAAMHGDMKQEDRDSIMKEFRSGSTRVLISTDVWARGIDVQQVSLV  335

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            IN  LP +K+NYVHRIGR GR  R G AI+L+ ++
Sbjct  336  INYDLPLDKENYVHRIGRSGRFGRKGTAINLLTSQ  370


 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 0/70 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  M + PE+ + +    +  P+ IQ+ +I  I+ G D +  A++G+GKT  FSI ++ 
Sbjct  25  TFESMNLKPELLKGIYNYGFEAPSAIQSRAIMQIIRGRDTIAQAQSGTGKTATFSIGILS  84

Query  63  IVYETLKDQQ  72
            +    KD Q
Sbjct  85  SIDTKSKDCQ  94


>sp|A6ZWD3|DBP1_YEAS7 ATP-dependent RNA helicase DBP1 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DBP1 PE=3 SV=1
Length=617

 Score = 147 bits (371),  Expect = 7e-36, Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 162/342 (47%), Gaps = 59/342 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P AL++ P+RELA Q     ++ +K+     +R  ++ GG    +Q+  ++ G D++V T
Sbjct  238  PSALVLAPTRELATQIF---EEARKFTYRSWVRPCVVYGGAPIGNQMREVDRGCDLLVAT  294

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ--IPQVTSDGKRLQVI  404
            PGRL+DL+  GK++L+ +++LVLDEAD +L  G+   I  +  +  +P V    +  Q +
Sbjct  295  PGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECDMPSV----ENRQTL  350

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT               FP  +     D + + +   V  V   ++ + +R+    +
Sbjct  351  MFSAT---------------FPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRI----L  391

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
              DD+  K             S  + +L          EHK    +IF  TK   D L  
Sbjct  392  YVDDMDKK-------------SALLDLLSA--------EHK-GLTLIFVETKRMADQLTD  429

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
            + I Q          F    +HGDR   ER++ L  FK      L+ T VAARG+DI  V
Sbjct  430  FLIMQ---------NFKATAIHGDRTQAERERALSAFKANVADILVATAVAARGLDIPNV  480

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
             +VIN  LP +  +YVHRIGR GRA   G+A S   +  + +
Sbjct  481  THVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQNI  522


 Score = 43.9 bits (102),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 18/55 (33%), Positives = 33/55 (60%), Gaps = 0/55 (0%)

Query  13   IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYET  67
            + + ++   +  PT +Q  SIP++  G D++  A+TGSGKTG F  P+   ++ +
Sbjct  165  LMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRS  219


>sp|P24784|DBP1_YEAST ATP-dependent RNA helicase DBP1 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP1 
PE=1 SV=2
Length=617

 Score = 147 bits (370),  Expect = 8e-36, Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 162/342 (47%), Gaps = 59/342 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P AL++ P+RELA Q     ++ +K+     +R  ++ GG    +Q+  ++ G D++V T
Sbjct  238  PSALVLAPTRELATQIF---EEARKFTYRSWVRPCVVYGGAPIGNQMREVDRGCDLLVAT  294

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ--IPQVTSDGKRLQVI  404
            PGRL+DL+  GK++L+ +++LVLDEAD +L  G+   I  +  +  +P V    +  Q +
Sbjct  295  PGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECDMPSV----ENRQTL  350

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT               FP  +     D + + +   V  V   ++ + +R+    +
Sbjct  351  MFSAT---------------FPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRI----L  391

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
              DD+  K             S  + +L          EHK    +IF  TK   D L  
Sbjct  392  YVDDMDKK-------------SALLDLLSA--------EHK-GLTLIFVETKRMADQLTD  429

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
            + I Q          F    +HGDR   ER++ L  FK      L+ T VAARG+DI  V
Sbjct  430  FLIMQ---------NFKATAIHGDRTQAERERALSAFKANVADILVATAVAARGLDIPNV  480

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
             +VIN  LP +  +YVHRIGR GRA   G+A S   +  + +
Sbjct  481  THVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQNI  522


 Score = 44.3 bits (103),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 18/55 (33%), Positives = 33/55 (60%), Gaps = 0/55 (0%)

Query  13   IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYET  67
            + + ++   +  PT +Q  SIP++  G D++  A+TGSGKTG F  P+   ++ +
Sbjct  165  LMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRS  219


>sp|A5E1W4|DBP3_LODEL ATP-dependent RNA helicase DBP3 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP3 PE=3 SV=2
Length=535

 Score = 145 bits (367),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 102/344 (30%), Positives = 175/344 (51%), Gaps = 50/344 (15%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
             L + P+RELA Q  +N++   +  D   +  + I GGV+  DQ+  + NG ++VV TPG
Sbjct  198  VLCISPTRELALQIYDNLEDLTRGTD---VSCVAIYGGVSKDDQIKKIRNGANVVVATPG  254

Query  349  RLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSA  408
            RL DL++ G ++LS + +LVLDEAD +L +G+ + I  +    P   + G+  Q ++ +A
Sbjct  255  RLVDLINDGAVDLSSINYLVLDEADRMLEKGFEEDIKLIIGSTP---AQGR--QTLMFTA  309

Query  409  TLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDD  468
            T    +V++L+   M+ P  V +   D +           N +  ++ E L       DD
Sbjct  310  TWPK-EVRELANNFMNQPVKVTIGDRDELS---------ANKRITQIVEVL-------DD  352

Query  469  VHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQ  528
               K+             + I +L+ +Y      ++K+   ++F   K +   +E    +
Sbjct  353  KFQKE------------KKLINLLQ-KYQNTGNGDNKI---LVFALYKKEASRIESLLHR  396

Query  529  QGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVI  588
                     ++F    +HGD    +R Q L+ FK G+   L+ TDVAARG+DI  V YVI
Sbjct  397  ---------NKFKVAAIHGDLSQQQRTQALQSFKSGECNLLLATDVAARGLDIPNVKYVI  447

Query  589  NVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
            N+T P   ++YVHR+GR GRA + G+A +    +++ +   +C+
Sbjct  448  NLTFPLTIEDYVHRLGRTGRAGQTGIAHTFFTEDEKHLSGALCN  491


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 22/37 (59%), Positives = 26/37 (70%), Gaps = 0/37 (0%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            PT IQ+ S P +L G DV+  AETGSGKT AF +P I
Sbjct  149  PTPIQSVSWPFLLDGKDVVGVAETGSGKTFAFGVPAI  185


>sp|A6QXC1|DBP3_AJECN ATP-dependent RNA helicase DBP3 OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=DBP3 PE=3 
SV=1
Length=487

 Score = 145 bits (365),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 108/338 (32%), Positives = 164/338 (49%), Gaps = 53/338 (16%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL-IIGGVAARDQLSVLENGVDIVVGTP  347
            A+I+ P+RELA Q  + + +F      P    L  I GG +  DQ   L+    ++V TP
Sbjct  146  AVIITPTRELAMQIHDQLVKF-----TPNGVGLACIYGGASKDDQRRALKKA-SVIVATP  199

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GRL D  S   LNL +V++LVLDEAD +L +G+   I  + + +P      ++ Q ++ +
Sbjct  200  GRLKDFHSDESLNLKKVKYLVLDEADRMLDKGFEQDIKDIVSAMPS----SRKRQTVMFT  255

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT     V+KL+   M  P  V + G+ S         +  N +  ++ E +        
Sbjct  256  ATW-PISVRKLATTFMKEPVTVTIGGDLSSD-------IRANTRIKQIVEVV--------  299

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                    +P      + S   +  +G  A        MD+ ++FC  K +   +E++  
Sbjct  300  --------KPENKESRLLSLLNQYQRGRNA--------MDKVLVFCLYKKEATRIERFIR  343

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
             +G         F    +HGD    ER  +L+ FK G V  L+ TDVAARG+DI  V  V
Sbjct  344  SKG---------FKVAGIHGDMNQTERFNSLDAFKSGSVPVLVATDVAARGLDIPAVKLV  394

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +NVT P   ++YVHRIGR GRA   GLAI++  TE +K
Sbjct  395  LNVTFPLTVEDYVHRIGRTGRAGSDGLAITMF-TENDK  431


 Score = 49.7 bits (117),  Expect = 8e-05, Method: Compositional matrix adjust.
 Identities = 38/124 (31%), Positives = 55/124 (44%), Gaps = 19/124 (15%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTG  84
            PT IQ+ + P +  G DV+  AETGSGKT AF +P I+ V E            ++ +  
Sbjct  93   PTPIQSVTWPYLFAGRDVIGVAETGSGKTLAFGVPCIRKVLEI-------NASHSSFRIS  145

Query  85   ASVLN---KWQMNPYDRGSAFAIGSDGLCC---------QSREVKEWHGCRATKGLMKGK  132
            A ++    +  M  +D+   F     GL C         Q R +K+     AT G +K  
Sbjct  146  AVIITPTRELAMQIHDQLVKFTPNGVGLACIYGGASKDDQRRALKKASVIVATPGRLKDF  205

Query  133  HYYE  136
            H  E
Sbjct  206  HSDE  209


>sp|Q4IAA0|FAL1_GIBZE ATP-dependent RNA helicase FAL1 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=FAL1 PE=3 SV=1
Length=401

 Score = 143 bits (360),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 106/340 (31%), Positives = 160/340 (47%), Gaps = 60/340 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+RELA Q  + +     Y++   ++    IGG    + +  L+ G  IV GTP
Sbjct  97   QALVLSPTRELATQIQSVVMALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHIVSGTP  153

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++ LVLDEAD LL++G+ + I  ++  +P  T      QV+V S
Sbjct  154  GRVADMIRRRHLRTRHIKMLVLDEADELLNKGFREQIYDVYRYLPPAT------QVVVVS  207

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL  +DV  ++ K M  P  + +K ++   + +    + V                   
Sbjct  208  ATL-PYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEK-----------------  249

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W      L   Y    I      QA+IFC T+   D L     
Sbjct  250  ---------------EDWK--FDTLCDLYDTLTIT-----QAVIFCNTRRKVDWL-----  282

Query  528  QQGGGPDK-KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                  DK +   F+   +HGD    ER   ++ F++G+ R LI TDV ARGID+  V  
Sbjct  283  -----TDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSL  337

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
            VIN  LP  ++NY+HRIGR GR  R G+AI+ V TE  ++
Sbjct  338  VINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTTEDVRI  377


 Score = 41.2 bits (95),  Expect = 0.028, Method: Compositional matrix adjust.
 Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 0/70 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  M +   + + +    +  P+ +Q+ +I  +  G D +  A++G+GKT  FSI ++Q
Sbjct  28  TFESMSLKENLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQ  87

Query  63  IVYETLKDQQ  72
           ++   +++ Q
Sbjct  88  VIDTAVRETQ  97


>sp|Q755A5|DBP3_EREGS ATP-dependent RNA helicase DBP3 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DBP3 PE=3 SV=1
Length=535

 Score = 145 bits (366),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 114/349 (33%), Positives = 163/349 (47%), Gaps = 61/349 (17%)

Query  281  KFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGV  340
            K  P   K L++ P+RELA Q  +N+ Q     D   L    + GGV    Q   L+   
Sbjct  189  KSTPRGVKCLVISPTRELASQIYDNLVQL---TDKVGLNCCCVYGGVQKDSQREQLKKA-  244

Query  341  DIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR  400
             +VV TPGRL DL+  G   L+ V++LVLDEAD +L +G+ + I R+   I +  SD + 
Sbjct  245  QVVVATPGRLLDLIEEGSAKLAGVQYLVLDEADRMLEKGFEEDIKRI---IKETKSDVR-  300

Query  401  LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED--SVPDTVHHVVVPVNP--KTDRLW  456
             Q ++ +AT    +V++L+   M  P  V +   D  S    +  VV  ++P  K  RL 
Sbjct  301  -QTLMFTATWPK-EVRELASTFMRAPVKVSIGNRDELSANKRITQVVEVIDPFKKEKRLL  358

Query  457  ERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTK  516
            E L +              + GA                         K D+ +IF   K
Sbjct  359  ELLKQY-------------QSGAK------------------------KNDKVLIFALYK  381

Query  517  IDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAA  576
             +   +E+     G         ++   +HGD    +R Q L  FK G    L+ TDVAA
Sbjct  382  KEASRVERNLKYNG---------YNVAAIHGDLSQQQRTQALSEFKAGTANLLLATDVAA  432

Query  577  RGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            RG+DI  V  VIN+T P   ++YVHRIGR GRA   G+A +L  TE+EK
Sbjct  433  RGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGATGVAHTLF-TEQEK  480


 Score = 48.1 bits (113),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 26/61 (43%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +FS + +   I + + +     PT IQA S P +L G DV+  AETGSGKT AF +P 
Sbjct  124  LLSFSHLNLHSAIQKEISKFPK--PTPIQAVSWPYLLAGKDVIGVAETGSGKTFAFGVPA  181

Query  61   I  61
            I
Sbjct  182  I  182


>sp|P57453|DEAD_BUCAI ATP-dependent RNA helicase DeaD OS=Buchnera 
aphidicola subsp. Acyrthosiphon pisum (strain APS) OX=107806 
GN=deaD PE=3 SV=1
Length=601

 Score = 146 bits (369),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 106/346 (31%), Positives = 158/346 (46%), Gaps = 61/346 (18%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            AP+ L++ P+RELA Q       F KY+    +  L + GG     QL  L  G  IVVG
Sbjct  74   APQILVLAPTRELAVQVAEAFSDFSKYMIG--IHVLPLYGGQRYELQLRALRQGPQIVVG  131

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGRL D +  G LNLS +  LVLDEAD +L  G+ + +  +  QIP      K  Q  +
Sbjct  132  TPGRLLDHLKRGTLNLSNLHGLVLDEADEMLRMGFIEDVETIMAQIP------KEHQTAL  185

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSV-PDTVHHVVVPVNPKTDRLWERLGKSHI  464
             SAT+    ++++S++ M  P  + ++   +  PD      +    KTD L         
Sbjct  186  FSATMPE-AIRRISKRFMRNPKEIKIQSNITTRPDIKQSYWMVYGRKTDAL---------  235

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                                             +R ++       IIF RTK     + +
Sbjct  236  ---------------------------------IRFLEAEDFSATIIFVRTKNATLEVSE  262

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
               + G         ++   L+GD     R+Q LER K G +  LI TDVAARG+D+  +
Sbjct  263  ALERNG---------YNSAALNGDMNQALREQTLERLKNGRLDILIATDVAARGLDVDRI  313

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
             +VIN  +P + ++YVHRIGR GRA R G A+  V   + ++  ++
Sbjct  314  SFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI  359


 Score = 68.6 bits (166),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 34/71 (48%), Positives = 48/71 (68%), Gaps = 0/71 (0%)

Query  2   AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
           + FS +G+ P I Q++ EM ++ P+ IQA  IPL+L G DVL  A+TGSGKT AFS+P++
Sbjct  6   STFSFLGLNPFIIQSLNEMGYVKPSPIQASCIPLLLEGRDVLGMAQTGSGKTAAFSLPLL  65

Query  62  QIVYETLKDQQ  72
             +   LK  Q
Sbjct  66  HNLNINLKAPQ  76


>sp|A3GFV3|FAL1_PICST ATP-dependent RNA helicase FAL1 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=FAL1 PE=3 SV=1
Length=399

 Score = 142 bits (359),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 114/360 (32%), Positives = 175/360 (49%), Gaps = 67/360 (19%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+RELA Q  N +K    Y++   +     IGG    D +  L+ G  IV GTP
Sbjct  96   QALILSPTRELAVQIQNVVKHLGDYMN---IHTHACIGGTHVGDDIKKLKQGQQIVSGTP  152

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D+V   +L+   ++ L+LDEAD L ++G+ + I  ++  +P        +QV+V S
Sbjct  153  GRVVDMVKRQQLSTRNIKMLILDEADELFTKGFKEQIYEVYKYLP------PSVQVVVVS  206

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL-WERLGKSHIRT  466
            ATL S +V +++ K    P                   V +  K D++  E + + H++ 
Sbjct  207  ATL-SREVLEMTNKFTTDP-------------------VKILVKRDQITLEGIKQYHVQC  246

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
            +               E W       K +          + QA+IFC TK+  + L    
Sbjct  247  E--------------KEDW-------KFDTLCDLYDNLTITQAVIFCNTKLKVNWLTDQM  285

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
             +Q          F+ V +HGD K  ER   +  F+ G+ R LI TDV ARGID+  V  
Sbjct  286  RKQN---------FTVVSMHGDMKQDERDSIMNDFRTGNSRVLISTDVWARGIDVQQVSL  336

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRG-KGCYNTRLKE  645
            VIN  LP +K+NY+HRIGR GR  R G+AI+L+  E       V + R  +  Y+T+++E
Sbjct  337  VINYDLPTDKENYIHRIGRSGRFGRKGVAINLITKED------VATLRDFEKYYSTKIRE  390


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 0/71 (0%)

Query  2   AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
           A F  M + P++ + +    +  P+ IQ+ +I  I+ G D +  A++G+GKT  FSI ++
Sbjct  26  ATFESMNLKPDLLKGIYGYGFEAPSAIQSRAIMQIINGRDTIAQAQSGTGKTATFSIGML  85

Query  62  QIVYETLKDQQ  72
           Q +    KD Q
Sbjct  86  QAIDTNAKDCQ  96


>sp|A5DQS0|DED1_PICGU ATP-dependent RNA helicase DED1 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DED1 PE=3 
SV=3
Length=637

 Score = 147 bits (370),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 159/342 (46%), Gaps = 59/342 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P AL++ P+REL  Q     K+F        +R  ++ GG     Q+  L+ G D++V T
Sbjct  253  PTALVMAPTRELVSQIFEEAKKFSY---RSWVRPCVVYGGADIGTQIRNLDRGCDLLVAT  309

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ--IPQVTSDGKRLQVI  404
            PGRL DL+  G+++LS +++LVLDEAD +L  G+   I  +  +  +P V S     Q +
Sbjct  310  PGRLKDLLERGRVSLSNIKYLVLDEADRMLDMGFEPQIRHIVQECDMPGVES----RQTL  365

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT               FP  + +   D + D +   V  V   ++ + +++     
Sbjct  366  MFSAT---------------FPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKV-----  405

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                ++ +D+        E  S  + +L           +     IIF  TK   DNL  
Sbjct  406  ----LYVEDD--------EKKSVLLDLLSA---------NDNGLTIIFTETKRMADNLAD  444

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
            +   QG         F    +HGDR  +ER++ L  FK G    L+ T VAARG+DI  V
Sbjct  445  FLYDQG---------FPATAIHGDRSQYEREKALAAFKSGTAPILVATAVAARGLDIPNV  495

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
             +V+N  LP +  +YVHRIGR GRA  +G+A +        V
Sbjct  496  SHVVNYDLPGDIDDYVHRIGRTGRAGNVGIATAFFNRNNRNV  537


 Score = 50.1 bits (118),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 0/65 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++AF+   + P I + ++   +  PT +Q  S+P++  G D++  A+TGSGKTG F  PV
Sbjct  168  ISAFTAPPLDPLIVENIKLSRFTKPTPVQKYSVPIVASGRDLMACAQTGSGKTGGFLFPV  227

Query  61   IQIVY  65
            +   Y
Sbjct  228  LSESY  232


>sp|Q7SBC6|DBP2_NEUCR ATP-dependent RNA helicase dbp2 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=drh-1 PE=3 SV=2
Length=562

 Score = 145 bits (367),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 102/341 (30%), Positives = 169/341 (50%), Gaps = 53/341 (16%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  LI+ P+RELA Q    I +F K   + ++R   + GGV    Q+  L  GV++ +
Sbjct  204  DGPIVLILAPTRELAVQIQQEISKFGK---SSRIRNTCVYGGVPKGPQIRDLSRGVEVCI  260

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D++ +GK NL +V +LVLDEAD +L  G+   I ++   I Q+  D    Q +
Sbjct  261  ATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKI---IGQIRPD---RQTL  314

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT    +V+ L+   +           D +   +  + +  N +  ++ E + +S  
Sbjct  315  MWSATWPK-EVRNLAADFL----------TDFIQVNIGSMDLAANHRITQIVEVVSESEK  363

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
            R                  M     KI++G            ++ +IF  TK   D++ +
Sbjct  364  RD----------------RMIKHLEKIMEGR--------ENQNKILIFTGTKRVADDITR  399

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
             F++Q G P         + +HGD++ +ER   L++FK G    ++ TDVA+RGID+  +
Sbjct  400  -FLRQDGWP--------ALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNI  450

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
             +V+N   P+  ++Y+HRIGR GRA   G AI+   T+  K
Sbjct  451  THVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNSK  491


 Score = 43.9 bits (102),  Expect = 0.006, Method: Compositional matrix adjust.
 Identities = 23/58 (40%), Positives = 32/58 (55%), Gaps = 0/58 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            F E G    +   V+   +  PT IQ++  P+ L G DV+  AETGSGKT  + +P I
Sbjct  134  FDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAI  191


>sp|Q8XA87|DEAD_ECO57 ATP-dependent RNA helicase DeaD OS=Escherichia 
coli O157:H7 OX=83334 GN=deaD PE=3 SV=3
Length=629

 Score = 146 bits (369),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 105/345 (30%), Positives = 161/345 (47%), Gaps = 58/345 (17%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            AP+ L++ P+RELA Q    +  F K++    +  + + GG     QL  L  G  IVVG
Sbjct  74   APQILVLAPTRELAVQVAEAMTDFSKHMRGVNV--VALYGGQRYDVQLRALRQGPQIVVG  131

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGRL D +  G L+LS++  LVLDEAD +L  G+ + +  +  QIP+        Q  +
Sbjct  132  TPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH------QTAL  185

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT+    +++++ + M  P  V                                    
Sbjct  186  FSATMPEA-IRRITRRFMKEPQEVR-----------------------------------  209

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
               + +   TRP   S   W+    + K E  VR ++    D AIIF RTK     + + 
Sbjct  210  ---IQSSVTTRPDI-SQSYWT-VWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEA  264

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
              + G         ++   L+GD     R+Q LER K G +  LI TDVAARG+D+  + 
Sbjct  265  LERNG---------YNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERIS  315

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
             V+N  +P + ++YVHRIGR GRA R G A+  V   + ++  ++
Sbjct  316  LVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI  360


 Score = 61.6 bits (148),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 31/69 (45%), Positives = 47/69 (68%), Gaps = 0/69 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F+++G+   I +A+ ++ +  P+ IQAE IP +L G DVL  A+TGSGKT AFS+P++Q 
Sbjct  8   FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN  67

Query  64  VYETLKDQQ  72
           +   LK  Q
Sbjct  68  LDPELKAPQ  76


>sp|Q9SQV1|RH40_ARATH DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis 
thaliana OX=3702 GN=RH40 PE=2 SV=1
Length=1088

 Score = 148 bits (374),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 104/336 (31%), Positives = 156/336 (46%), Gaps = 61/336 (18%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P  LI+ P+RELA Q  +   +F +   + ++    + GG     QL  LE G DIVV
Sbjct  506  NGPTVLILAPTRELATQIQDEALRFGR---SSRISCTCLYGGAPKGPQLKELERGADIVV  562

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL+D++    ++  QV  LVLDEAD +L  G+   I ++ N+IP       R Q +
Sbjct  563  ATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIP------PRRQTL  616

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + +AT    +V+K++  ++  P  V++                                 
Sbjct  617  MYTATWPK-EVRKIASDLLVNPVQVNIG--------------------------------  643

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI--KEHKMDQAIIFCRTKIDCDNL  522
            R D++ A             + E +  ++ E  +  I   + +  + IIFC TK  CD+L
Sbjct  644  RVDELAANKAI-------TQYVEVVPQMEKERRLEQILRSQERGSKVIIFCSTKRLCDHL  696

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
             +            G  F  V +HGD+   ER   L +F+ G    LI TDVAARG+DI 
Sbjct  697  ARSV----------GRHFGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIK  746

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
             +  VIN   P   ++YVHRIGR GRA   G+A + 
Sbjct  747  DIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTF  782


 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 24/71 (34%), Positives = 38/71 (54%), Gaps = 0/71 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F   G+ PEI + +    +  PT IQA++ P+ L   D++  A+TGSGKT  + IP   +
Sbjct  437  FESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFIL  496

Query  64   VYETLKDQQEG  74
            +     D + G
Sbjct  497  LRHCRNDSRNG  507


>sp|G0SFM2|DBP2_CHATD ATP-dependent RNA helicase DBP2 OS=Chaetomium 
thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) 
OX=759272 GN=DBP2 PE=3 SV=2
Length=556

 Score = 145 bits (366),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 106/345 (31%), Positives = 169/345 (49%), Gaps = 61/345 (18%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  L++ P+RELA Q    I +F K   + ++R   I GGV    Q+  L+ GV++ +
Sbjct  201  DGPIVLVLAPTRELAVQIQQEINKFGK---SSRIRNTCIYGGVPKGPQIRDLQRGVEVCI  257

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D++ +GK NL +V +LVLDEAD +L  G+   I ++   I Q+  D    Q +
Sbjct  258  ATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKI---ISQIRPD---RQTL  311

Query  405  VCSAT----LHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLG  460
            + SAT    + +     L++ I      +DL     +   V   V+  + K DRL + L 
Sbjct  312  MWSATWPKEVRNLAADFLTDFIQVNIGSLDLAANHRITQIVE--VISESEKRDRLIKHLE  369

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
            K       + ++D                                 ++ +IF  TK   D
Sbjct  370  KI------MDSRDT-------------------------------QNKCLIFVGTKRVAD  392

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
            ++ + F++Q G P         + +HGD++ +ER   L++FK G    ++ TDVA+RGID
Sbjct  393  DITR-FLRQDGWP--------ALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGID  443

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  + +VIN   P+  ++Y+HRIGR GRA   G AI+   TE  K
Sbjct  444  VRNITHVINYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENAK  488


 Score = 44.7 bits (104),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 0/58 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            F E G    +   V+   +  PT IQA+  P+ L G DV+  AETGSGKT  + +P I
Sbjct  131  FDEAGFPRYVMDEVKAQGFPAPTAIQAQGWPMALSGRDVVGIAETGSGKTLTYCLPAI  188


>sp|Q8K9H6|DEAD_BUCAP ATP-dependent RNA helicase DeaD OS=Buchnera 
aphidicola subsp. Schizaphis graminum (strain Sg) OX=198804 
GN=deaD PE=3 SV=1
Length=601

 Score = 146 bits (368),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 106/346 (31%), Positives = 159/346 (46%), Gaps = 61/346 (18%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            AP+ L++ P+RELA Q       F KYI    +  L + GG     QL  L  G  IVVG
Sbjct  74   APQILVLAPTRELAVQVAEAFSDFSKYIMG--IHVLPLYGGQRYEVQLRALRQGPQIVVG  131

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGRL D +  G LNLS +  LVLDEAD +L  G+ + +  + +QIP      K  Q  +
Sbjct  132  TPGRLLDHLKRGTLNLSNLYALVLDEADEMLRMGFIEDVETIMSQIP------KEHQTAL  185

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSV-PDTVHHVVVPVNPKTDRLWERLGKSHI  464
             SAT+    ++++S++ M  P  + ++   +  PD      +    KTD L         
Sbjct  186  FSATMPE-AIRRISKRFMKNPQEIKIQSNITTRPDIKQSYWMVYGRKTDAL---------  235

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                                             +R ++       IIF +TK     + +
Sbjct  236  ---------------------------------IRFLEVEDFSATIIFVKTKNATLEVSE  262

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
               + G         ++   L+GD     R+Q LER K G +  LI TDVAARG+D+  +
Sbjct  263  ALERNG---------YNSAALNGDMNQALREQTLERLKSGRLDILIATDVAARGLDVDRI  313

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
             +VIN  +P + ++YVHRIGR GRA R G A+  V   + ++  ++
Sbjct  314  SFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI  359


 Score = 64.7 bits (156),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 48/71 (68%), Gaps = 0/71 (0%)

Query  2   AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
           + FS +G+ P I +++ +M ++ P+ IQA  IPL+L G DVL  A+TGSGKT AFS+P++
Sbjct  6   STFSFLGLNPFIIKSLSKMGYVKPSPIQAACIPLLLEGRDVLGMAQTGSGKTAAFSLPLL  65

Query  62  QIVYETLKDQQ  72
             +   LK  Q
Sbjct  66  HNLNINLKAPQ  76


>sp|Q8Y8N0|CSHA_LISMO ATP-dependent RNA helicase CshA OS=Listeria 
monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) 
OX=169963 GN=cshA PE=2 SV=1
Length=520

 Score = 145 bits (365),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 107/335 (32%), Positives = 161/335 (48%), Gaps = 59/335 (18%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N  +ALI+ P+RELA Q    +  +K   D   +R L + GG     Q+  L+    IVV
Sbjct  69   NNVQALIIAPTRELAIQVSEEL--YKLSYDK-HVRVLAVYGGSDISRQIRSLKKNPQIVV  125

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GTPGR+ D ++   L L  V  LVLDEAD +L+ G+ D I  +  ++P         Q +
Sbjct  126  GTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVP------AERQTL  179

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT+    ++++ E+ MH P  + +K ++     +    V V+ K    ++ L     
Sbjct  180  LFSATMPD-PIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEK--FDVLS----  232

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
            R  DV A          PE+                        AI+F RTK   D L +
Sbjct  233  RLLDVQA----------PEL------------------------AIVFGRTKRRVDELSR  258

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
                +G         +    +HGD    +R   L +FK+G +  L+ TDVAARG+DI GV
Sbjct  259  ALDMRG---------YVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDISGV  309

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
             +V N  +P + ++YVHRIGR GRA + G+AI+ V
Sbjct  310  THVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFV  344


 Score = 53.9 bits (128),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 40/61 (66%), Gaps = 0/61 (0%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           M  FSE G+  +I ++V  M +   T IQ ++IPL L G D++  A+TG+GKT AF +P+
Sbjct  1   MTKFSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLEGKDLIGQAQTGTGKTAAFGLPM  60

Query  61  I  61
           I
Sbjct  61  I  61


>sp|P41380|IF4A3_NICPL Eukaryotic initiation factor 4A-3 OS=Nicotiana 
plumbaginifolia OX=4092 PE=2 SV=1
Length=391

 Score = 142 bits (358),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 173/370 (47%), Gaps = 65/370 (18%)

Query  276  QVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
            Q+  TK   +  +ALI+ P+RELA QT   I     YI+   ++    IGG +  + +  
Sbjct  78   QIVDTK--SSEVQALILSPTRELAAQTEKVILAIGDYIN---VQAHACIGGKSVGEDIRK  132

Query  336  LENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
            LE+GV +V GTPGR+ D++    L    ++ L+LDE+D +LS+G+ D I  ++  +P   
Sbjct  133  LEHGVQVVSGTPGRVCDMIKRRTLRTRGIKLLILDESDEMLSRGFKDQIYDVYRYLP---  189

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL  455
                 LQV++ SATL + ++ +++ K M  P  + +K ++   + +    V V       
Sbjct  190  ---PELQVVLISATLPN-EILEITSKFMTDPVRILVKRDELTLEGIKQFFVAVEK-----  240

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRT  515
                                       E W       K +          + QA+IFC T
Sbjct  241  ---------------------------EEW-------KFDTLCDLYDTLTITQAVIFCNT  266

Query  516  KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA  575
            K   D L             + + F+   +HGD    ER   +  F+ G  R LI TDV 
Sbjct  267  KRKVDWLTSKM---------RENNFTVSSMHGDMPQKERDAIMAEFRGGTTRVLITTDVW  317

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRG  635
            ARG+D+  V  VIN  LP+ ++ Y+HRIGR GR  R G+AI+ V ++  K+   +     
Sbjct  318  ARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDI-----  372

Query  636  KGCYNTRLKE  645
            +  Y+T++ E
Sbjct  373  EQYYSTQIDE  382


 Score = 47.0 bits (110),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 41/64 (64%), Gaps = 0/64 (0%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           +A+F+EMG+  ++ + V +  +  P+ IQ  ++  I+ G DV+  A++G+GKT   ++ V
Sbjct  17  IASFAEMGIKDDLLRGVYQYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMIALTV  76

Query  61  IQIV  64
            QIV
Sbjct  77  CQIV  80


>sp|Q4IJH1|DBP3_GIBZE ATP-dependent RNA helicase DBP3 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=DBP3 PE=3 SV=1
Length=581

 Score = 145 bits (367),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 105/347 (30%), Positives = 162/347 (47%), Gaps = 66/347 (19%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            KA++V P+RELA QT    +Q        +++ + + GG +  DQ ++L  G DI+V TP
Sbjct  232  KAVVVSPTRELAMQTY---EQMASVAALNRMKCVCLYGGASKDDQRNLLNRGADIIVATP  288

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GRL D +S G ++LS   F VLDEAD +L +G+ + I  + +  P               
Sbjct  289  GRLKDFMSDGTVDLSHSAFAVLDEADRMLDKGFEEDIKMILSSCPP--------------  334

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
                    ++  + +M   TW         P +V  +         ++    G       
Sbjct  335  --------REKRQTLMFTATW---------PQSVQTLAATFMVSPVKIAIGSGGKETAGG  377

Query  468  DVHAKDNTRPGANSPEMWSEAIKIL----KGEYAVRAIKEH-----KMDQAIIFCRTKID  518
             V  + N R         S+++++L    K    +  +KEH     K D+ ++FC  K +
Sbjct  378  AVELQANAR--------ISQSVEVLEPRGKEFRLLEVLKEHQQGSKKNDRILVFCLYKKE  429

Query  519  CDNLEQYFIQQG---GGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA  575
               +E +  ++G   GG            +HGD +  +R ++LE FK G    L+ TDVA
Sbjct  430  ATRIENFLSRKGIRVGG------------IHGDLRQEQRTRSLEAFKSGQTPVLVATDVA  477

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            ARG+DI  V  VINVT P   ++YVHRIGR GRA + G AI+    E
Sbjct  478  ARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKTGQAITFFTVE  524


 Score = 47.4 bits (111),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 21/44 (48%), Positives = 30/44 (68%), Gaps = 0/44 (0%)

Query  21   DWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIV  64
            ++  PT IQ+ S P  L G DV+  AETGSGKT AF++P ++ +
Sbjct  180  NYKAPTPIQSASWPFTLSGRDVIGVAETGSGKTMAFALPCVEAI  223


>sp|P0A9P8|DEAD_SHIFL ATP-dependent RNA helicase DeaD OS=Shigella 
flexneri OX=623 GN=deaD PE=3 SV=2
Length=629

 Score = 146 bits (368),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 105/345 (30%), Positives = 161/345 (47%), Gaps = 58/345 (17%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            AP+ L++ P+RELA Q    +  F K++    +  + + GG     QL  L  G  IVVG
Sbjct  74   APQILVLAPTRELAVQVAEAMTDFSKHMRGVNV--VALYGGQRYDVQLRALRQGPQIVVG  131

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGRL D +  G L+LS++  LVLDEAD +L  G+ + +  +  QIP+        Q  +
Sbjct  132  TPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH------QTAL  185

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT+    +++++ + M  P  V                                    
Sbjct  186  FSATMPEA-IRRITRRFMKEPQEVR-----------------------------------  209

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
               + +   TRP   S   W+    + K E  VR ++    D AIIF RTK     + + 
Sbjct  210  ---IQSSVTTRPDI-SQSYWT-VWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEA  264

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
              + G         ++   L+GD     R+Q LER K G +  LI TDVAARG+D+  + 
Sbjct  265  LERNG---------YNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERIS  315

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
             V+N  +P + ++YVHRIGR GRA R G A+  V   + ++  ++
Sbjct  316  LVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI  360


 Score = 61.6 bits (148),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 31/69 (45%), Positives = 47/69 (68%), Gaps = 0/69 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F+++G+   I +A+ ++ +  P+ IQAE IP +L G DVL  A+TGSGKT AFS+P++Q 
Sbjct  8   FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN  67

Query  64  VYETLKDQQ  72
           +   LK  Q
Sbjct  68  LDPELKAPQ  76


>sp|P0A9P6|DEAD_ECOLI ATP-dependent RNA helicase DeaD OS=Escherichia 
coli (strain K12) OX=83333 GN=deaD PE=1 SV=2
Length=629

 Score = 146 bits (368),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 105/345 (30%), Positives = 161/345 (47%), Gaps = 58/345 (17%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            AP+ L++ P+RELA Q    +  F K++    +  + + GG     QL  L  G  IVVG
Sbjct  74   APQILVLAPTRELAVQVAEAMTDFSKHMRGVNV--VALYGGQRYDVQLRALRQGPQIVVG  131

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGRL D +  G L+LS++  LVLDEAD +L  G+ + +  +  QIP+        Q  +
Sbjct  132  TPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH------QTAL  185

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT+    +++++ + M  P  V                                    
Sbjct  186  FSATMPEA-IRRITRRFMKEPQEVR-----------------------------------  209

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
               + +   TRP   S   W+    + K E  VR ++    D AIIF RTK     + + 
Sbjct  210  ---IQSSVTTRPDI-SQSYWT-VWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEA  264

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
              + G         ++   L+GD     R+Q LER K G +  LI TDVAARG+D+  + 
Sbjct  265  LERNG---------YNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERIS  315

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
             V+N  +P + ++YVHRIGR GRA R G A+  V   + ++  ++
Sbjct  316  LVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI  360


 Score = 61.6 bits (148),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 31/69 (45%), Positives = 47/69 (68%), Gaps = 0/69 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F+++G+   I +A+ ++ +  P+ IQAE IP +L G DVL  A+TGSGKT AFS+P++Q 
Sbjct  8   FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN  67

Query  64  VYETLKDQQ  72
           +   LK  Q
Sbjct  68  LDPELKAPQ  76


>sp|P0A9P7|DEAD_ECOL6 ATP-dependent RNA helicase DeaD OS=Escherichia 
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 
GN=deaD PE=3 SV=2
Length=629

 Score = 146 bits (368),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 105/345 (30%), Positives = 161/345 (47%), Gaps = 58/345 (17%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            AP+ L++ P+RELA Q    +  F K++    +  + + GG     QL  L  G  IVVG
Sbjct  74   APQILVLAPTRELAVQVAEAMTDFSKHMRGVNV--VALYGGQRYDVQLRALRQGPQIVVG  131

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGRL D +  G L+LS++  LVLDEAD +L  G+ + +  +  QIP+        Q  +
Sbjct  132  TPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH------QTAL  185

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT+    +++++ + M  P  V                                    
Sbjct  186  FSATMPEA-IRRITRRFMKEPQEVR-----------------------------------  209

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
               + +   TRP   S   W+    + K E  VR ++    D AIIF RTK     + + 
Sbjct  210  ---IQSSVTTRPDI-SQSYWT-VWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEA  264

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
              + G         ++   L+GD     R+Q LER K G +  LI TDVAARG+D+  + 
Sbjct  265  LERNG---------YNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERIS  315

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
             V+N  +P + ++YVHRIGR GRA R G A+  V   + ++  ++
Sbjct  316  LVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI  360


 Score = 61.6 bits (148),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 31/69 (45%), Positives = 47/69 (68%), Gaps = 0/69 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F+++G+   I +A+ ++ +  P+ IQAE IP +L G DVL  A+TGSGKT AFS+P++Q 
Sbjct  8   FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN  67

Query  64  VYETLKDQQ  72
           +   LK  Q
Sbjct  68  LDPELKAPQ  76


>sp|Q84UQ1|RH42_ORYSJ DEAD-box ATP-dependent RNA helicase 42 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os08g0159900 PE=2 
SV=1
Length=1049

 Score = 148 bits (373),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 107/347 (31%), Positives = 167/347 (48%), Gaps = 67/347 (19%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  LI+ P+REL  Q  ++IK+F K +    +  + I GG     Q+S L+ G +IVV
Sbjct  496  DGPIGLIMAPTRELVVQIHSDIKKFSKALG---INCVAIYGGSGVAQQISELKRGAEIVV  552

Query  345  GTPGRLDDLV--STGKL-NLSQVRFLVLDEADGLLSQGYSDFINRM-HNQIPQVTSDGKR  400
             TPGR+ D++  S+GK+ NL +V FLV+DEAD +   G+   I R+  N  P        
Sbjct  553  CTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIVQNTRPD-------  605

Query  401  LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV--VPVNPKTDRLWER  458
             Q ++ SAT     V+ L+ K++  P  + + G   V   +  +V   P N +  RL E 
Sbjct  606  RQTVLFSATFPR-QVEILARKVLTKPVEIQVGGRSVVNKDITQLVEVRPENERFFRLLEL  664

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
            LG+                       W +  KIL                  +F  ++  
Sbjct  665  LGE-----------------------WFDKGKIL------------------VFVHSQDK  683

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
            CD+L +   Q         H + C+ LHG +   +R+  L  FK      LI T VAARG
Sbjct  684  CDSLLKDLFQ---------HGYPCLSLHGGKDQTDRESTLADFKSNVCSLLIATSVAARG  734

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +D+  +  V+N  +P+  ++YVHR+GR GRA R G A++ ++ E+E+
Sbjct  735  LDVKELELVVNYDVPNHYEDYVHRVGRTGRAGRKGFAVTFISEEEER  781


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 23/66 (35%), Positives = 43/66 (65%), Gaps = 4/66 (6%)

Query  6    EMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVY  65
            + G+  ++   ++++ +  P  IQA+++P+I+ G D +  A+TGSGKT AF +P+++ V 
Sbjct  428  QSGLTSKLLDTIKKLGFEKPMSIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHV-  486

Query  66   ETLKDQ  71
               KDQ
Sbjct  487  ---KDQ  489


>sp|A6ZP47|DED1_YEAS7 ATP-dependent RNA helicase DED1 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DED1 PE=3 SV=1
Length=604

 Score = 145 bits (367),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 105/342 (31%), Positives = 160/342 (47%), Gaps = 59/342 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P A+I+ P+RELA Q  +   + KK+     ++  ++ GG    +QL  +E G D++V T
Sbjct  226  PTAVIMAPTRELATQIFD---EAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVAT  282

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL+DL+  GK++L+ V++LVLDEAD +L  G+   I  +      +T  G+R Q ++ 
Sbjct  283  PGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDC-DMTPVGER-QTLMF  340

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV--NPKTDRLWERLGKSHI  464
            SAT  + D++ L+   +    ++ +    S  + +   V+ V    K   L + L  S  
Sbjct  341  SATFPA-DIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVENQDKKSALLDLLSAS--  397

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
             TD +                                        +IF  TK   D L  
Sbjct  398  -TDGL---------------------------------------TLIFVETKRMADQLTD  417

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
            + I Q          F    +HGDR   ER++ L  F+ G    L+ T VAARG+DI  V
Sbjct  418  FLIMQ---------NFRATAIHGDRTQSERERALAAFRSGAATLLVATAVAARGLDIPNV  468

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
             +VIN  LP +  +YVHRIGR GRA   GLA +   +E   +
Sbjct  469  THVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNI  510


 Score = 47.0 bits (110),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 21/53 (40%), Positives = 32/53 (60%), Gaps = 0/53 (0%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKG  77
            PT +Q  S+P++  G D++  A+TGSGKTG F  PV+   ++T    Q   +G
Sbjct  165  PTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQG  217


>sp|A7E449|DBP2_SCLS1 ATP-dependent RNA helicase dbp2 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=dbp2 PE=3 SV=1
Length=572

 Score = 145 bits (366),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 106/341 (31%), Positives = 164/341 (48%), Gaps = 55/341 (16%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  L++ P+RELA Q    I +F K   + ++R   + GGV    Q+  L  GV++ +
Sbjct  221  DGPIVLVLAPTRELAVQIQQEITKFGK---SSRIRNTCVYGGVPKGGQIRDLAKGVEVCI  277

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D++ +GK NL +V +LVLDEAD +L  G+   I ++  QI          Q  
Sbjct  278  ATPGRLIDMIESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKILGQI------RPDRQTC  331

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT               +P  V     D + D +   +  +          L  +H 
Sbjct  332  MWSAT---------------WPKEVRALASDYLNDFIQVNIGSLE---------LSANHR  367

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
             T  V             E+ SE  K  K    +  I E K ++ +IF  TK   D++ +
Sbjct  368  ITQIV-------------EVVSEFEKRDKMTKHLEKIMEDKDNKILIFTGTKRVADDITR  414

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
             F++Q G P         + +HGD++ +ER   L  FK G    ++ TDVA+RGID+  +
Sbjct  415  -FLRQDGWP--------ALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVASRGIDVRNI  465

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
             +V N   P+  ++Y+HRIGR GRA + G AI+L  T+ +K
Sbjct  466  THVFNYDYPNNSEDYIHRIGRTGRAGQKGTAITLFTTDNQK  506


 Score = 44.3 bits (103),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 23/59 (39%), Positives = 32/59 (54%), Gaps = 0/59 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             F E G    +   V+   +  PT IQ++  P+ L G DV+  AETGSGKT  + +P I
Sbjct  150  TFDEAGFPAYVMTEVKAQGFPAPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAI  208


>sp|P06634|DED1_YEAST ATP-dependent RNA helicase DED1 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DED1 
PE=1 SV=2
Length=604

 Score = 145 bits (367),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 105/342 (31%), Positives = 160/342 (47%), Gaps = 59/342 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P A+I+ P+RELA Q  +   + KK+     ++  ++ GG    +QL  +E G D++V T
Sbjct  226  PTAVIMAPTRELATQIFD---EAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVAT  282

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL+DL+  GK++L+ V++LVLDEAD +L  G+   I  +      +T  G+R Q ++ 
Sbjct  283  PGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDC-DMTPVGER-QTLMF  340

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV--NPKTDRLWERLGKSHI  464
            SAT  + D++ L+   +    ++ +    S  + +   V+ V    K   L + L  S  
Sbjct  341  SATFPA-DIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVENQDKKSALLDLLSAS--  397

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
             TD +                                        +IF  TK   D L  
Sbjct  398  -TDGL---------------------------------------TLIFVETKRMADQLTD  417

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
            + I Q          F    +HGDR   ER++ L  F+ G    L+ T VAARG+DI  V
Sbjct  418  FLIMQ---------NFRATAIHGDRTQSERERALAAFRSGAATLLVATAVAARGLDIPNV  468

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
             +VIN  LP +  +YVHRIGR GRA   GLA +   +E   +
Sbjct  469  THVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNI  510


 Score = 47.0 bits (110),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 21/53 (40%), Positives = 32/53 (60%), Gaps = 0/53 (0%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKG  77
            PT +Q  S+P++  G D++  A+TGSGKTG F  PV+   ++T    Q   +G
Sbjct  165  PTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQG  217


>sp|Q7SH33|PRP5_NEUCR Pre-mRNA-processing ATP-dependent RNA helicase 
prp-5 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A 
/ CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=prp-5 
PE=3 SV=1
Length=1194

 Score = 148 bits (373),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 168/342 (49%), Gaps = 64/342 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            ALI+ P+REL  Q  ++++ F K +   KLR +   GG A +DQ++ L+ G +I+V TPG
Sbjct  637  ALIMTPTRELCTQIYSDLQPFAKAL---KLRVVAAYGGNAIKDQIAELKRGAEIIVATPG  693

Query  349  RLDDLVST--GKL-NLSQVRFLVLDEADGLLSQGYSDFINRMHNQI-PQVTSDGKRLQVI  404
            RL DL++   G++ NL +  +LVLDEAD +   G+   + ++ N + P         Q I
Sbjct  694  RLIDLLAANGGRVTNLKRATYLVLDEADRMFDMGFEPQVMKIFNNVRPD-------RQTI  746

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN--PKTDRLWERLGKS  462
            + SAT+    +  L++K++  P  + + G   V   +  +V  ++   K +RL E LG+ 
Sbjct  747  LFSATMPRI-IDALTKKVLRDPVEITVGGRSVVAPEITQIVEVMDEGKKFNRLLELLGEL  805

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
            +   DDV                                      +++IF   +   D+L
Sbjct  806  YADDDDV--------------------------------------RSLIFVERQEKADDL  827

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
             +  +++G         + C+ +HG +   +R   +  FKKG    LI T +AARG+D+ 
Sbjct  828  LRELLRRG---------YGCMSIHGGKDQEDRNSTISDFKKGVCPILIATSIAARGLDVK  878

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
             +  VIN   P+  ++YVHR GR GRA   G A++ +  E+E
Sbjct  879  QLKLVINYDAPNHLEDYVHRAGRTGRAGNTGTAVTFITEEQE  920


 Score = 52.0 bits (123),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 27/68 (40%), Positives = 45/68 (66%), Gaps = 4/68 (6%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            +S+ G+   I   +E + +  PT IQ +++P+I+ G DV+  A+TGSGKT AF++P+++ 
Sbjct  563  WSQCGLTRPILDTIESLGFEKPTPIQMQALPVIMSGRDVIGVAKTGSGKTMAFALPMLRH  622

Query  64   VYETLKDQ  71
            V    KDQ
Sbjct  623  V----KDQ  626


>sp|Q2HBE7|DED1_CHAGB ATP-dependent RNA helicase DED1 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=DED1 PE=3 SV=1
Length=688

 Score = 146 bits (369),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 105/332 (32%), Positives = 159/332 (48%), Gaps = 55/332 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P ALI+ P+REL  Q     ++ +K+     +R  ++ GG     QL  +E G D++V T
Sbjct  283  PTALILAPTRELVSQIY---EEARKFAYRSWVRPCVVYGGADIGSQLRQMERGCDLLVAT  339

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL DL+  G+++L  +++LVLDEAD +L  G+   I R+  Q   + + G+R Q ++ 
Sbjct  340  PGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIV-QGEDMPTTGQR-QTLMF  397

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT               FP  + +  +D + D V   V  V   ++ + +++       
Sbjct  398  SAT---------------FPRDIQMLAQDFLNDYVFLSVGRVGSTSENITQKVEY----V  438

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
            +DV  +             S  + IL           H     +IF  TK   D+L  + 
Sbjct  439  EDVDKR-------------SVLLDILH---------THAGGLTLIFVETKRMADSLSDFL  476

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
            I Q          F    +HGDR   ER++ LE F+ G    L+ T VAARG+DI  V +
Sbjct  477  INQ---------NFPATSIHGDRTQRERERALELFRNGKCPILVATAVAARGLDIPNVTH  527

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            VIN  LP +  +YVHRIGR GRA   G+A + 
Sbjct  528  VINYDLPTDVDDYVHRIGRTGRAGNTGIATAF  559


 Score = 48.1 bits (113),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 0/58 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            FS   +   +   +E   + +PT +Q  SIP+++ G D++  A+TGSGKTG F  P++
Sbjct  200  FSNPPLDAHLLSNIELARYQIPTPVQKYSIPIVINGRDLMACAQTGSGKTGGFLFPIM  257


>sp|Q87KH5|RHLB_VIBPA ATP-dependent RNA helicase RhlB OS=Vibrio 
parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926 
GN=rhlB PE=3 SV=1
Length=437

 Score = 142 bits (359),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 113/339 (33%), Positives = 167/339 (49%), Gaps = 57/339 (17%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P  P+A+I+ P+RELA Q  N+ +     I +  L+  L  GG +   QL+ L++GVDI+
Sbjct  82   PTQPRAIIMAPTRELAIQIFNDAEPL---IASTGLKAALAYGGESYDKQLAKLQDGVDIL  138

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            +GT GR+ D       NL+ ++ +VLDEAD +   G+   I  +  ++P+     +RL +
Sbjct  139  IGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPE---PKERLNM  195

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            +  SATL S+ V++L+ + MH P               H VV P      R+ E L   +
Sbjct  196  LF-SATL-SYRVQELAFEHMHNPE--------------HVVVEPAQKTGHRIQEEL--FY  237

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
               +D  A   T                         I+E   D+AI+F  TK  C+++ 
Sbjct  238  PSNEDKMALLQT------------------------LIEEEWPDRAIVFANTKHKCESV-  272

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
                   G     GH+     L GD    +R++ LE+F KGDV  L+ TDVAARG+ I  
Sbjct  273  ------WGHLAADGHRVG--LLTGDVPQKKREKILEQFTKGDVDILVATDVAARGLHIPQ  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +IS    E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEE  363


 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 20/53 (38%), Positives = 37/53 (70%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           F+++G+ P++ + +E+  +   T IQA ++P++L G D+   A+TG+GKT AF
Sbjct  11  FADLGLQPQVTEGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAF  63


>sp|Q1DP69|DBP2_COCIM ATP-dependent RNA helicase DBP2 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DBP2 PE=3 SV=2
Length=545

 Score = 144 bits (364),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 106/344 (31%), Positives = 166/344 (48%), Gaps = 61/344 (18%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  L++ P+RELA Q    I +F K   + ++R   + GGV    Q+  L  GV++ +
Sbjct  200  DGPIVLVLAPTRELAVQIQAEITKFGK---SSRIRNTCVYGGVPRGPQIRDLSRGVEVCI  256

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D++  GK NL +V +LVLDEAD +L  G+   I ++   I Q+  D    Q  
Sbjct  257  ATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKI---IGQIRPD---RQTC  310

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGED-SVPDTVHHVVVPVN--PKTDRLWERLGK  461
            + SAT    +V++L+   +H    V +  +D S    +  +V  V+   K DR+   L +
Sbjct  311  MWSATWPK-EVRQLAHDFLHDYIQVYIGSQDLSANHRITQIVEIVSDFEKRDRMINHLER  369

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
                                                   I + K  + +IF  TK   D+
Sbjct  370  ---------------------------------------IMDDKKSKILIFTGTKRVADD  390

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            + + F++Q G P         + +HGD++ +ER   L  FK G    ++ TDVA+RGID+
Sbjct  391  ITR-FLRQDGWP--------ALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVASRGIDV  441

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
              + +V+N   P+  ++YVHRIGR GRA   G AI+L  T+  K
Sbjct  442  RDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNAK  485


 Score = 44.7 bits (104),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 23/59 (39%), Positives = 32/59 (54%), Gaps = 0/59 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             F E G    +   V+   +  PT IQ++  P+ L G DV+  AETGSGKT  + +P I
Sbjct  129  TFDEAGFPQYVISEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAI  187


>sp|A4QSS5|DBP2_PYRO7 ATP-dependent RNA helicase DBP2 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=DBP2 PE=3 SV=1
Length=548

 Score = 144 bits (364),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 171/341 (50%), Gaps = 53/341 (16%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  LI+ P+RELA Q    I +F K   + ++R   + GGV    Q+  L  GV++ +
Sbjct  197  DGPIVLILAPTRELAVQIQAEISKFGK---SSRIRNTCVYGGVPKGPQIRDLSRGVEVCI  253

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D++ +GK NL +V +LVLDEAD +L  G+   I ++   I Q+  D    Q +
Sbjct  254  ATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKI---IGQIRPD---RQTL  307

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT    +V+ ++   +          +D +   +  + +  N +  ++ E + +S  
Sbjct  308  MWSATWPK-EVRNMAADFL----------QDFIQVNIGSLDLSANHRITQIVEVVSESEK  356

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
            R                  M     K++ G       K+ K ++ +IF  TK   D + +
Sbjct  357  RD----------------RMIRHMEKVMDG-------KDSK-NKILIFVGTKRVADEITR  392

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
             F++Q G P         + +HGD++ +ER   L++FK G    ++ TDVA+RGID+  +
Sbjct  393  -FLRQDGWP--------ALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNI  443

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
             +V+N   P+  ++Y+HRIGR GRA   G AI+   TE  K
Sbjct  444  THVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENSK  484


 Score = 43.5 bits (101),  Expect = 0.006, Method: Compositional matrix adjust.
 Identities = 23/58 (40%), Positives = 32/58 (55%), Gaps = 0/58 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            F E G    +   V+   +  PT IQ++  P+ L G DV+  AETGSGKT  + +P I
Sbjct  127  FDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAI  184


>sp|Q0DB53|RH52A_ORYSJ DEAD-box ATP-dependent RNA helicase 52A 
OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0602400 PE=2 
SV=2
Length=602

 Score = 145 bits (366),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 100/332 (30%), Positives = 160/332 (48%), Gaps = 46/332 (14%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+AL++ P+RELA Q +N  ++ KK+     LR ++  GG    +QL  LE G DI+V T
Sbjct  169  PRALVLAPTRELAAQ-IN--EEAKKFSFQTGLRVVVAYGGTPMYNQLRDLERGADILVAT  225

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL D+V   K++L  +++LV+DEAD +L  G+   I ++  ++       +  Q ++ 
Sbjct  226  PGRLVDMVERSKVSLEAIKYLVMDEADRMLDMGFEPQIRKIVERMNMPRKSVR--QTMLF  283

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT               FP  +     D + + +   V  V   TD + +   K  + +
Sbjct  284  SAT---------------FPPEIQRLASDFLSNYIFITVGRVGSSTDLIMQ---KVELLS  325

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
            D               E     + +L+ +    A  + +    ++F  TK + D+L  + 
Sbjct  326  DG--------------EKRGYLLDLLQRQSVGVANSKLQQPLTLVFVETKREADSLRYWL  371

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
              +G         F    +HGDR   ER+  L  FK G    ++ TDVA+RG+D+  V +
Sbjct  372  YSKG---------FPATAIHGDRTQQERESALRSFKTGLTPIMVATDVASRGLDVPNVAH  422

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            VIN  LP   ++YVHRIGR GRA + G A + 
Sbjct  423  VINYDLPKSIEDYVHRIGRTGRAGKAGSATAF  454


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 22/58 (38%), Positives = 35/58 (60%), Gaps = 0/58 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            F   G++  + + V    +  PT +Q  S+P+ L G D++  A+TGSGKT AF +PV+
Sbjct  86   FEAAGLVEAVLRNVARCGYESPTPVQRYSMPIALAGRDLMACAQTGSGKTAAFCLPVV  143


>sp|Q75B50|DED1_EREGS ATP-dependent RNA helicase DED1 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DED1 PE=3 SV=2
Length=623

 Score = 145 bits (366),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 154/332 (46%), Gaps = 55/332 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P A+++ P+RELA Q  +   + KK+     ++  ++ GG   R Q+  LE G D++V T
Sbjct  229  PTAVVLAPTRELATQIFD---EAKKFTYRSWVKPCVVYGGADIRQQIRELERGCDLIVAT  285

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL+DL+  GK++L  V++LVLDEAD +L  G+   I  +       T + +  Q ++ 
Sbjct  286  PGRLNDLLERGKISLCSVKYLVLDEADRMLDMGFEPQIRHIVEGCDMPTVENR--QTLMF  343

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT               FPT +     D + D +   V  V   ++ + +++       
Sbjct  344  SAT---------------FPTDIQHLAADFLKDYIFLSVGRVGSTSENITQKV-------  381

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
              +H +D                 I K    +  +        ++F  TK   D L  + 
Sbjct  382  --LHVED-----------------IDKRSVLLDLLAASDGGLTLVFVETKRMADALTDFL  422

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
            I Q           S   +HGDR   ER++ L  F+ G    L+ T VAARG+DI  V +
Sbjct  423  IMQ---------NLSATAIHGDRTQAERERALAFFRTGRANVLVATAVAARGLDIPNVTH  473

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            VIN  LP +  +YVHRIGR GRA   GLA + 
Sbjct  474  VINYDLPSDIDDYVHRIGRTGRAGNTGLATAF  505


 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 18/37 (49%), Positives = 26/37 (70%), Gaps = 0/37 (0%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            PT +Q  S+P++  G D++  A+TGSGKTG F  PV+
Sbjct  169  PTPVQKYSVPIVAKGRDLMACAQTGSGKTGGFLFPVL  205


>sp|Q8Y755|CSHB_LISMO DEAD-box ATP-dependent RNA helicase CshB 
OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 
/ EGD-e) OX=169963 GN=cshB PE=2 SV=1
Length=435

 Score = 142 bits (358),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 160/336 (48%), Gaps = 61/336 (18%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            +A +A+I  PSRELA Q  N I++  KY +  ++   L+IGG   +  +  L+    I+V
Sbjct  72   DAVQAVITAPSRELATQIYNEIRKVTKYSEK-EIAVQLVIGGTDKQRAIDKLKKQPQIIV  130

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GTPGR++DL+    L +   + LV+DEAD  L  G+ + ++ +  ++P        LQ++
Sbjct  131  GTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPA------NLQML  184

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNP--KTDRLWERLGKS  462
            V SAT+    +K    K M  P +  ++ + +   TV H ++      K D L   L  S
Sbjct  185  VFSATIPQ-KLKPFLSKYMENPRYEHIQPKVAASKTVEHRIMATRSRNKLDLLKNVLVGS  243

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
                               P +                        AI+F  TK   D +
Sbjct  244  Q------------------PYL------------------------AIVFTNTKTTADEV  261

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
                I++G              +HGD  P ERK+ +++ +  D ++++ TD+AARGIDI 
Sbjct  262  ANGLIERG---------LKVAKIHGDVNPRERKRTMKQIENLDYQYVVATDLAARGIDIQ  312

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            G+ +V+N  LPD+   Y+HR GR GRA   G+A++L
Sbjct  313  GISHVVNYELPDDLDFYIHRTGRTGRAGHSGIALTL  348


 Score = 49.3 bits (116),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 22/63 (35%), Positives = 39/63 (62%), Gaps = 0/63 (0%)

Query  2   AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
           + F + G  P I  A++++ +  PT++Q + IP IL G  ++  ++TG+GKT  F +P+I
Sbjct  5   SRFDQFGFQPFIGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPII  64

Query  62  QIV  64
             V
Sbjct  65  NNV  67


>sp|A1DGZ7|DBP2_NEOFI ATP-dependent RNA helicase dbp2 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp2 
PE=3 SV=1
Length=545

 Score = 144 bits (363),  Expect = 4e-35, Method: Compositional matrix adjust.
 Identities = 104/342 (30%), Positives = 167/342 (49%), Gaps = 57/342 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  LI+ P+RELA Q    I +F K   + ++R   + GGV    Q+  L  GV++ +
Sbjct  191  DGPIVLILAPTRELAVQIQTEISKFGK---SSRIRNTCVYGGVPKGPQIRDLSRGVEVCI  247

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D++  G+ NL +V +LVLDEAD +L  G+   I ++   I Q+  D    Q  
Sbjct  248  ATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKI---ISQIRPD---RQTC  301

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGED-SVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            + SAT    +V++L+   ++    V++   D S    +  +V  V+              
Sbjct  302  MWSATWPK-EVRQLATDFLNDYIQVNIGSMDLSANHRITQIVEVVS--------------  346

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                D   +D                K++K    +  I E++ ++ +IF  TK   D + 
Sbjct  347  ----DFEKRD----------------KMIK---HLEKIMENRGNKCLIFTGTKRIADEIT  383

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
            + F++Q G P         + +HGD++  ER   L  FK G    ++ TDVA+RGID+  
Sbjct  384  R-FLRQDGWP--------ALSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRD  434

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            + +V+N   P+  ++Y+HRIGR GRA   G AI+   TE  K
Sbjct  435  ITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENSK  476


 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 23/58 (40%), Positives = 32/58 (55%), Gaps = 0/58 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            F E G    +   V+   +  PT IQ++  P+ L G DV+  AETGSGKT  + +P I
Sbjct  121  FDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAI  178


>sp|A6SFW7|DBP2_BOTFB ATP-dependent RNA helicase dbp2 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=dbp2 PE=3 SV=2
Length=514

 Score = 144 bits (362),  Expect = 4e-35, Method: Compositional matrix adjust.
 Identities = 109/363 (30%), Positives = 174/363 (48%), Gaps = 57/363 (16%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  L++ P+RELA Q    I +F K   + ++R   + GGV    Q+  L  GV++ +
Sbjct  174  DGPIVLVLAPTRELAVQIQQEITKFGK---SSRIRNTCVYGGVPKGGQIRDLAKGVEVCI  230

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D++ +GK NL +V +LVLDEAD +L  G+   I ++  QI          Q  
Sbjct  231  ATPGRLIDMIESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKILGQI------RPDRQTC  284

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT    +V+ L+   ++    V++   +                       L  +H 
Sbjct  285  MWSATWPK-EVRALASDYLNEFIQVNIGSLE-----------------------LSANHR  320

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
             T  V             E+ SE  K  K    +  I E K ++ +IF  TK   D++ +
Sbjct  321  ITQIV-------------EVVSEFEKRDKMTKHLEKIMEDKDNKILIFTGTKRVADDITR  367

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
             F++Q G P         + +HGD++ +ER   L  FK G    ++ TDVA+RGID+  +
Sbjct  368  -FLRQDGWP--------ALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVASRGIDVRNI  418

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS--SRGKGCYNTR  642
             +V N   P+  ++Y+HRIGR GRA + G AI+L  T+ +K    + +  +  K   + R
Sbjct  419  THVFNYDYPNNSEDYIHRIGRTGRAGQKGTAITLFTTDNQKQARDLVNVLTEAKQVIDPR  478

Query  643  LKE  645
            L E
Sbjct  479  LAE  481


 Score = 43.9 bits (102),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 23/59 (39%), Positives = 32/59 (54%), Gaps = 0/59 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             F E G    +   V+   +  PT IQ++  P+ L G DV+  AETGSGKT  + +P I
Sbjct  103  TFDEAGFPAYVMTEVKAQGFPAPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAI  161


>sp|Q6C4D4|DBP2_YARLI ATP-dependent RNA helicase DBP2 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP2 PE=3 
SV=1
Length=552

 Score = 144 bits (362),  Expect = 6e-35, Method: Compositional matrix adjust.
 Identities = 105/341 (31%), Positives = 162/341 (48%), Gaps = 55/341 (16%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  L++ P+RELA Q      +F K   + K+R   + GGV    Q+  L  GV+IV+
Sbjct  188  DGPIVLVLAPTRELAVQIQQECSKFGK---SSKIRNTCVYGGVPRGQQIRDLARGVEIVI  244

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D++ +GK NL +V +LVLDEAD +L  G+   I ++ +QI          Q +
Sbjct  245  ATPGRLLDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQI------RPDRQTL  298

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT               +P  V     D + D +   +  +          L  SH 
Sbjct  299  MWSAT---------------WPKEVQRLAHDYLKDQIQVNIGSLE---------LSASHN  334

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
             T  V             E+ +E  K  +    +  + E+K  + +IF  TK   D++ +
Sbjct  335  ITQVV-------------EVCTEYEKRDRLVKHLETVMENKESKCLIFTGTKRVADDITK  381

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
             F++Q G P         + +HGD++  ER   L  F++G    ++ TDVA+RGID+ G+
Sbjct  382  -FLRQDGWP--------ALAIHGDKQQQERDWVLNEFRQGKSPIMVATDVASRGIDVKGI  432

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
             +VIN   P   ++YVHRIGR GRA   G A +    +  K
Sbjct  433  NFVINYDYPSNSEDYVHRIGRTGRAGTKGTAYTYFTEDNRK  473


 Score = 46.6 bits (109),  Expect = 7e-04, Method: Compositional matrix adjust.
 Identities = 23/58 (40%), Positives = 34/58 (59%), Gaps = 0/58 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            F E G  P + + V++  +  PT IQ +  P+ L G DV+  A TGSGKT ++ +P I
Sbjct  118  FDEAGFPPYVLKEVKQQGFEKPTAIQCQGWPMALTGRDVIGIASTGSGKTLSYCLPAI  175


>sp|Q2UMH8|DBP3_ASPOR ATP-dependent RNA helicase dbp3 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp3 
PE=3 SV=1
Length=498

 Score = 142 bits (359),  Expect = 6e-35, Method: Compositional matrix adjust.
 Identities = 113/352 (32%), Positives = 163/352 (46%), Gaps = 63/352 (18%)

Query  280  TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
            TK  P  P A+I+ P+RELA Q  + + +F   +    +R   + GGV   +Q   L+  
Sbjct  148  TKQKPYRPLAVIISPTRELAMQIYDQLLKFSGSVG---VRVACVFGGVRKEEQREALKTA  204

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
              +VV TPGRL DL + G ++L +V++LVLDEAD +L +G+   I  +   +P       
Sbjct  205  -GVVVATPGRLKDLQNDGSVDLGKVKYLVLDEADRMLDKGFEQDIKDIIRPMPV-----S  258

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVP----DTVHHVVVPVNP--KTD  453
            + Q I+ +AT     V+ L+   M  P  V + G+ S        +  VV  V P  K  
Sbjct  259  KRQTIMFTATWPP-SVRDLASTFMSSPVTVTIGGDPSADPRANTRIKQVVEVVKPHEKES  317

Query  454  RLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFC  513
            RL + L +S               G   PE                        + + FC
Sbjct  318  RLVQLLNRSQ-------------RGVPEPE------------------------KVLAFC  340

Query  514  RTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTD  573
              K +   +E+    +G         F    +HGD    ER ++L+ FK G    L+ TD
Sbjct  341  LYKKEAMRIERLLRTKG---------FKVAGIHGDLSQQERFRSLDAFKTGAATVLVATD  391

Query  574  VAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            VAARG+DI  V  VINVT P   ++YVHRIGR GRA   G A++L  TE +K
Sbjct  392  VAARGLDIPSVKQVINVTFPLTVEDYVHRIGRTGRAGAEGHAVTLF-TETDK  442


 Score = 46.2 bits (108),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 4/85 (5%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTG  84
            PT IQ+ + PL+  G DV+  AETGSGKT AF +P ++ + ++   +Q+  +    I   
Sbjct  103  PTSIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKIQDSAMTKQKPYRPLAVI---  159

Query  85   ASVLNKWQMNPYDRGSAFAIGSDGL  109
             S   +  M  YD+   F+ GS G+
Sbjct  160  ISPTRELAMQIYDQLLKFS-GSVGV  183


>sp|Q8TFK8|DED1_CANGA ATP-dependent RNA helicase DED1 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DED1 PE=3 SV=1
Length=617

 Score = 144 bits (364),  Expect = 6e-35, Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 161/340 (47%), Gaps = 55/340 (16%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P A+++ P+RELA Q  +   + KK+     ++  ++ GG    +Q+  +++G D++V T
Sbjct  229  PTAVVMAPTRELATQIFD---EAKKFCYRSWVKPCVVYGGAPIGNQMREMDHGCDLLVAT  285

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL+DL+  GK++LS V++LVLDEAD +L  G+   I  +      +   G+R Q ++ 
Sbjct  286  PGRLNDLLERGKVSLSNVKYLVLDEADRMLDMGFEPQIRHIVEDC-DMPPTGER-QTLMF  343

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT    D++ L+   +H   ++ +    S  + +   ++ V        E   K+    
Sbjct  344  SATF-PHDIQHLARDFLHDYIFLSVGRVGSTSENITQRILYV--------ENRDKNSALL  394

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
            D + A ++                                +  +IF  TK   D L  + 
Sbjct  395  DLLAASND--------------------------------NLTLIFVETKRMADQLTDFL  422

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
            I Q          FS   +HGDR   ER++ L  F+ G    L+ T VAARG+DI  V +
Sbjct  423  IMQ---------NFSATAIHGDRSQAERERALAAFRSGRANILVATAVAARGLDIPNVTH  473

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
            VIN  LP +  +YVHRIGR GRA   G+A +    +   +
Sbjct  474  VINYDLPSDVDDYVHRIGRTGRAGNTGVATAFFNRDNNNI  513


 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 20/53 (38%), Positives = 31/53 (58%), Gaps = 0/53 (0%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKG  77
            PT +Q  S+P++  G D++  A+TGSGKTG F  PV+   + T   ++    G
Sbjct  168  PTPVQKYSVPIVSKGRDLMACAQTGSGKTGGFLFPVLSESFLTGPAEKAANDG  220


>sp|Q5B0J9|DBP2_EMENI ATP-dependent RNA helicase dbp2 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=dbp2 PE=3 SV=1
Length=563

 Score = 144 bits (362),  Expect = 6e-35, Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 166/344 (48%), Gaps = 61/344 (18%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  LI+ P+RELA Q    I +F K   + ++R   + GGV    Q+  L  GV++ +
Sbjct  212  DGPIVLILAPTRELAVQIQAEISKFGK---SSRIRNTCVYGGVPKGPQIRDLSRGVEVCI  268

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D++  G+ NL +V +LVLDEAD +L  G+   I ++   I Q+  D    Q  
Sbjct  269  ATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKI---ISQIRPD---RQTC  322

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGED-SVPDTVHHVVVPVNP--KTDRLWERLGK  461
            + SAT    +V++L+   ++    V++   D S    +  +V  ++   K DR+ + L K
Sbjct  323  MWSATWPK-EVRQLASDFLNNYIQVNIGSMDLSANHRITQIVEVISEFEKRDRMIKHLEK  381

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
                                                   I E++ ++ ++F  TK   D 
Sbjct  382  ---------------------------------------IMENRGNKCLVFTGTKRIADE  402

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            + + F++Q G P         + +HGD++  ER   L  FK G    ++ TDVA+RGID+
Sbjct  403  ITR-FLRQDGWP--------ALSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDV  453

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
              + +VIN   P+  ++YVHRIGR GRA   G AI+   T+  K
Sbjct  454  RDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNAK  497


 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 23/59 (39%), Positives = 33/59 (56%), Gaps = 0/59 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             F E G    +   V+   +  PT IQ++  P+ L G DV+  AETGSGKT ++ +P I
Sbjct  141  TFDEAGFPQYVLSEVKAQGFEKPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAI  199


>sp|Q6BU54|DED1_DEBHA ATP-dependent RNA helicase DED1 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DED1 PE=3 SV=1
Length=630

 Score = 144 bits (364),  Expect = 7e-35, Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 154/340 (45%), Gaps = 71/340 (21%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P AL++ P+REL  Q  +  K+F        +R  ++ GG     Q+  LE G D++V T
Sbjct  240  PTALVMAPTRELVSQIFDEAKKFAY---RSWVRPSVVYGGADIGGQIRNLERGCDLLVAT  296

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ--IPQVTSDGKRLQVI  404
            PGRL DL+  G+++L+ +++LVLDEAD +L  G+   I  +  +  +P V    +  Q +
Sbjct  297  PGRLKDLLERGRVSLASIKYLVLDEADRMLDMGFEPQIRHIVQECDMPGV----EDRQTL  352

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL-----  459
            + SAT               FP  +     D + + +   V  V   ++ + +++     
Sbjct  353  MFSAT---------------FPKEIQFLARDFLKEYIFLSVGRVGSTSENITQKILYVED  397

Query  460  -GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
              K  +  D + A DN                                   IIF  TK  
Sbjct  398  EEKKSVLLDLLSANDN--------------------------------GLTIIFTETKRM  425

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
             DNL  +   QG         F    +HGDR  +ER++ L  FK G    L+ T VAARG
Sbjct  426  ADNLADFLYDQG---------FPATAIHGDRSQYEREKALAAFKTGTAPILVATAVAARG  476

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            +DI  V +++N  LP +  +YVHRIGR GRA  +G+A + 
Sbjct  477  LDIPNVSHIVNYDLPSDIDDYVHRIGRTGRAGNIGIATAF  516


 Score = 49.3 bits (116),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 0/65 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + AF+   + P + + V+   +  PT +Q  S+P++  G D++  A+TGSGKTG F  PV
Sbjct  155  ITAFTAPPLDPLLVENVKLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPV  214

Query  61   IQIVY  65
            +   Y
Sbjct  215  LSESY  219


>sp|Q4X195|DBP2_ASPFU ATP-dependent RNA helicase dbp2 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=dbp2 PE=3 SV=2
Length=547

 Score = 143 bits (361),  Expect = 7e-35, Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 167/342 (49%), Gaps = 57/342 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  LI+ P+RELA Q    I +F K   + ++R   + GGV    Q+  L  GV++ +
Sbjct  193  DGPIVLILAPTRELAVQIQAEISKFGK---SSRIRNTCVYGGVPKGPQIRDLSRGVEVCI  249

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D++  G+ NL +V +LVLDEAD +L  G+   I ++   + Q+  D    Q  
Sbjct  250  ATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKI---VSQIRPD---RQTC  303

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGED-SVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            + SAT    +V++L+   ++    V++   D S    +  +V  V+              
Sbjct  304  MWSATWPK-EVRQLATDFLNDYIQVNIGSMDLSANHRITQIVEVVS--------------  348

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                D   +D                K++K    +  I E++ ++ +IF  TK   D + 
Sbjct  349  ----DFEKRD----------------KMIK---HLEKIMENRSNKCLIFTGTKRIADEIT  385

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
            + F++Q G P         + +HGD++  ER   L  FK G    ++ TDVA+RGID+  
Sbjct  386  R-FLRQDGWP--------ALSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRD  436

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            + +V+N   P+  ++Y+HRIGR GRA   G AI+   TE  K
Sbjct  437  ITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENSK  478


 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 23/58 (40%), Positives = 32/58 (55%), Gaps = 0/58 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            F E G    +   V+   +  PT IQ++  P+ L G DV+  AETGSGKT  + +P I
Sbjct  123  FDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAI  180


>sp|Q5AWA6|DBP3_EMENI ATP-dependent RNA helicase dbp3 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=dbp3 PE=3 SV=2
Length=488

 Score = 142 bits (358),  Expect = 7e-35, Method: Compositional matrix adjust.
 Identities = 110/346 (32%), Positives = 168/346 (49%), Gaps = 67/346 (19%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P A+++ P+RELA Q  + + +F + +D   ++   I GGV   +Q   L++   +VV T
Sbjct  147  PLAVVISPTRELAMQIYDQLVKFAEKVD---IQVACIFGGVKKDEQREALKSAA-VVVAT  202

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL DL + G L+L +V++LVLDEAD +L +G+   I  + + +P      KR Q ++ 
Sbjct  203  PGRLKDLQNDGSLDLGRVKYLVLDEADRMLDKGFEQDIKDIISPMPV----SKR-QTVMF  257

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            +AT     V+ L+   M  P  V + G               +P  D             
Sbjct  258  TATWPPI-VRNLASTFMTSPVTVTIGG---------------DPSAD-------------  288

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKG----EYAVRAIKEHKM---DQAIIFCRTKIDC  519
                      P ANS     + ++++K     +  V+ +  H+    D+ + FC  K + 
Sbjct  289  ----------PRANS--RIKQVVEVVKPHEKEQRLVQILNRHQRGTPDKVLAFCLYKKEA  336

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
              +E+    +G         F    +HGD    ER ++LE FK G    L+ TDVAARG+
Sbjct  337  MRVERLLRTKG---------FKVAGIHGDLSQQERFRSLEAFKSGAATVLVATDVAARGL  387

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            DI  V  V+NVT P   ++YVHRIGR GRA   G AI+L  TE +K
Sbjct  388  DIPHVKLVVNVTFPLTVEDYVHRIGRTGRAGADGHAITLF-TETDK  432


 Score = 46.6 bits (109),  Expect = 7e-04, Method: Compositional matrix adjust.
 Identities = 30/79 (38%), Positives = 44/79 (56%), Gaps = 4/79 (5%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTG  84
            PT IQ+ + PL+  G DV+  AETGSGKT AF +P ++ V + LK +Q+  +    +   
Sbjct  96   PTAIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKVLD-LKTKQKSCRPLAVV---  151

Query  85   ASVLNKWQMNPYDRGSAFA  103
             S   +  M  YD+   FA
Sbjct  152  ISPTRELAMQIYDQLVKFA  170


>sp|Q6C9P3|DBP3_YARLI ATP-dependent RNA helicase DBP3 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP3 PE=3 
SV=1
Length=532

 Score = 143 bits (360),  Expect = 8e-35, Method: Compositional matrix adjust.
 Identities = 113/338 (33%), Positives = 162/338 (48%), Gaps = 56/338 (17%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + L+V P+RELA Q  +NIK+     D   L  + + GGV    Q S L+     V+ TP
Sbjct  196  RVLVVSPTRELAMQIYDNIKEL---CDVVGLHAVCVYGGVPKEQQRSDLKRA-SFVIATP  251

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GRL DL+  G  +LS+V +LVLDEAD +L +G+ + I ++   I      G+  Q ++ S
Sbjct  252  GRLCDLIDEGSCDLSKVSYLVLDEADRMLEKGFEEDIKKI---IGSTRPTGR--QTVMFS  306

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT    +V+KL+E  M  PT V +   D +                R+ + +     R  
Sbjct  307  ATWPP-EVRKLAEGFMKTPTKVMIGERDELA------------ANKRITQSVEVLDPRAK  353

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
            +    D  R  AN      +  KIL                  IF   K +   +E    
Sbjct  354  EGRLLDLLRQYAN------DDFKIL------------------IFALYKKEATRVENTLT  389

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
            ++G         +    +HGD    +R + L+ FKKG+   L+ TDVAARG+DI  V  V
Sbjct  390  RRG---------YGVAAIHGDLSQQQRTKALDEFKKGEKNILLATDVAARGLDIPNVKLV  440

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            IN+T P   ++YVHRIGR GRA + G AI+L  TE EK
Sbjct  441  INLTFPLTVEDYVHRIGRTGRAGKTGQAITLF-TEHEK  477


 Score = 48.1 bits (113),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 26/64 (41%), Positives = 39/64 (61%), Gaps = 2/64 (3%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS + + P I + + +  +  PT IQA S P +L G D++  AETGSGKT  F++P ++ 
Sbjct  128  FSHVTLDPRITKVLTK--FPRPTPIQAVSWPYLLAGKDMVGVAETGSGKTFTFAVPALEH  185

Query  64   VYET  67
            V  T
Sbjct  186  VLST  189


>sp|Q4I7K4|DED1_GIBZE ATP-dependent RNA helicase DED1 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=DED1 PE=3 SV=1
Length=675

 Score = 144 bits (364),  Expect = 9e-35, Method: Compositional matrix adjust.
 Identities = 103/334 (31%), Positives = 157/334 (47%), Gaps = 59/334 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P +LI+ P+REL  Q  +   + +K+     +R  ++ GG     QL  +E G D++V T
Sbjct  272  PTSLILAPTRELVSQIFD---ESRKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVAT  328

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM--HNQIPQVTSDGKRLQVI  404
            PGRL DL+  G+++L  +++LVLDEAD +L  G+   I R+     +PQV    +  Q +
Sbjct  329  PGRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPQV----QDRQTL  384

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT               FP  + +   D + D +   V  V   ++ + +++     
Sbjct  385  MFSAT---------------FPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKVEY---  426

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
              +DV  +             S  + IL           H     +IF  TK   D+L  
Sbjct  427  -VEDVDKR-------------SVLLDILH---------SHANGLTLIFVETKRMADSLSD  463

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
            + I Q          F    +HGDR   ER++ LE F+ G    L+ T VAARG+DI  V
Sbjct  464  FLINQ---------NFPATSIHGDRTQRERERALEFFRNGRCPILVATAVAARGLDIPHV  514

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
             +VIN  LP +  +YVHRIGR GRA   G+A + 
Sbjct  515  THVINYDLPTDVDDYVHRIGRTGRAGNTGIATAF  548


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 20/53 (38%), Positives = 34/53 (64%), Gaps = 0/53 (0%)

Query  13   IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVY  65
            + + +E   + +PT +Q  SIP++ GG D++  A+TGSGKTG F  P++   +
Sbjct  197  LCRNIELAHYKVPTPVQKYSIPIVSGGRDLMACAQTGSGKTGGFLFPILSQAF  249


>sp|Q8H136|RH14_ARATH DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis 
thaliana OX=3702 GN=RH14 PE=1 SV=2
Length=619

 Score = 144 bits (362),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 99/342 (29%), Positives = 156/342 (46%), Gaps = 63/342 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P  L++ P+RELA Q      +F +   + ++    + GG     QL  LE G DIVV T
Sbjct  231  PTILVLSPTRELATQIQEEAVKFGR---SSRISCTCLYGGAPKGPQLRDLERGADIVVAT  287

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL+D++   +++L Q+ +LVLDEAD +L  G+   I ++  +IP       + Q ++ 
Sbjct  288  PGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIP------TKRQTLMY  341

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSV---PDTVHHVVVPVNPKTDRLWERLGKSH  463
            +AT     V+K++  ++  P  V++   D +        H+ V    +  R  E++ +S 
Sbjct  342  TATWPK-GVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQ  400

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                         PG+                            + IIFC TK  CD L 
Sbjct  401  ------------EPGS----------------------------KVIIFCSTKRMCDQLT  420

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
            +   +Q          F    +HGD+   ER   L +F+ G    L+ TDVAARG+D+  
Sbjct  421  RNLTRQ----------FGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKD  470

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  V+N   P+  ++YVHRIGR GRA   G A +    +  K
Sbjct  471  IRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSK  512


 Score = 47.0 bits (110),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 23/59 (39%), Positives = 35/59 (59%), Gaps = 0/59 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
            + +F   G  PE+ + V    +  PT IQA+S P+ + G D++  A+TGSGKT  + IP
Sbjct  157  LMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIP  215


>sp|Q0UWA6|DED1_PHANO ATP-dependent RNA helicase DED1 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=DED1 PE=3 SV=1
Length=696

 Score = 144 bits (364),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 97/332 (29%), Positives = 155/332 (47%), Gaps = 55/332 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P +LI+ P+REL  Q  +  ++F        +R  ++ GG     QL  +E G D++V T
Sbjct  287  PTSLILAPTRELVSQIFDEARKFAY---RSWVRPCVVYGGADIGSQLRQIERGCDLLVAT  343

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL DL+  G+++L+ +++LVLDEAD +L  G+   I R+        + G+  Q ++ 
Sbjct  344  PGRLVDLIERGRISLASIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPPTAGR--QTLMF  401

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT               FP  + +   D + + +   V  V   ++ + +++   ++  
Sbjct  402  SAT---------------FPRDIQMLARDFLKEYIFLSVGRVGSTSENITQKI--EYVED  444

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
             D                        K    +  +  H    ++IF  TK   D+L  + 
Sbjct  445  AD------------------------KRSVLLDILHTHGAGLSLIFVETKRMADSLSDFL  480

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
            I QG         F    +HGDR   ER++ LE F+ G    L+ T VAARG+DI  V +
Sbjct  481  INQG---------FPATSIHGDRTQREREKALEMFRSGRCPILVATAVAARGLDIPNVTH  531

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            V+N  LP +  +YVHRIGR GRA   G+A + 
Sbjct  532  VVNYDLPTDIDDYVHRIGRTGRAGNTGIATAF  563


 Score = 50.1 bits (118),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 34/51 (67%), Gaps = 0/51 (0%)

Query  17   VEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYET  67
            +E   + +PT +Q  SIP+++GG D++  A+TGSGKTG F  P++   ++ 
Sbjct  216  IELSGYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILAQAFQN  266


>sp|Q2HAD8|PRP5_CHAGB Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 
/ DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=PRP5 
PE=3 SV=1
Length=1064

 Score = 145 bits (367),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 98/341 (29%), Positives = 166/341 (49%), Gaps = 62/341 (18%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            ALI+ P+REL  Q  +++  F K +   KLR +   GG A +DQ++ L+ G +I+V TPG
Sbjct  505  ALIMTPTRELCTQIYSDLLPFAKAL---KLRAIAAYGGNAIKDQIAELKRGAEIIVATPG  561

Query  349  RLDDLVS--TGKL-NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            R+ DL++  +G++ NL +  +LVLDEAD +   G+   + ++ N +          Q I+
Sbjct  562  RMIDLLAANSGRVTNLKRATYLVLDEADRMFDMGFEPQVMKIFNNV------RPDRQTIL  615

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN--PKTDRLWERLGKSH  463
             SAT+    +  L++K++  P  + + G   V   +  +V  ++   K  RL E LG+ +
Sbjct  616  FSATMPRI-IDALTKKVLREPVEIQVGGRSVVAPEITQIVEILDEGKKFVRLLELLGELY  674

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
               DDV                                      +A+IF   +   D+L 
Sbjct  675  ADDDDV--------------------------------------RALIFVERQEKADDLL  696

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
            +  +++G         + C+ +HG +   +R   +  FKKG    +I T VAARG+D+  
Sbjct  697  REVLRRG---------YGCMSIHGGKDQEDRNSTISDFKKGVCPIMIATSVAARGLDVKQ  747

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            +  V+N   P+  ++YVHR GR GRA   G A++ +  E+E
Sbjct  748  LKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFITEEQE  788


 Score = 50.1 bits (118),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 24/59 (41%), Positives = 40/59 (68%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +S+ G+   I   VE + +  PT IQ +++P+I+ G DV+  A+TGSGKT AF +P+++
Sbjct  431  WSQCGLTRPILDVVEGLGYEKPTSIQMQALPVIMSGRDVIGVAKTGSGKTMAFVLPMLR  489


>sp|Q10055|FAL1_SCHPO ATP-dependent RNA helicase fal1 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=tif412 
PE=1 SV=1
Length=394

 Score = 140 bits (352),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 158/339 (47%), Gaps = 58/339 (17%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+RELA Q  N +       D+  ++    IGG +  + +  L+ G  +V GTP
Sbjct  91   QALILSPTRELAVQIQNVVLALG---DHMNVQCHACIGGTSVGNDIKKLDYGQHVVSGTP  147

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    V+ L+LDEAD LL+QG+ + I  ++  +P  T      QV+V S
Sbjct  148  GRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGT------QVVVVS  201

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL   DV +++ K    P  + +K ++   + +    + V                   
Sbjct  202  ATLPQ-DVLEMTNKFTTNPVRILVKRDELTLEGLKQYFIAV-------------------  241

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W      L   Y    I      QA+IFC ++   D L +   
Sbjct  242  -------------EKEEWK--FDTLCDLYDTLTIT-----QAVIFCNSRRKVDWLTEKM-  280

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
                    +   F+   +HG+    ER   ++ F++G+ R LICTD+ ARGID+  V  V
Sbjct  281  --------REANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLV  332

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
            IN  LP  ++NY+HRIGR GR  R G+AI+ V  E  ++
Sbjct  333  INYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDVRI  371


 Score = 47.4 bits (111),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 44/72 (61%), Gaps = 0/72 (0%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           +++F EM +  ++ + +    +  P+ +Q+ +I  I  G DV+  A++G+GKT  FSI +
Sbjct  20  VSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGI  79

Query  61  IQIVYETLKDQQ  72
           +Q +  +++D Q
Sbjct  80  LQSIDLSVRDTQ  91


>sp|B2VG58|RHLB_ERWT9 ATP-dependent RNA helicase RhlB OS=Erwinia 
tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / 
NCPPB 4357 / Et1/99) OX=465817 GN=rhlB PE=3 SV=1
Length=430

 Score = 140 bits (354),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 109/339 (32%), Positives = 163/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLENGVD+++
Sbjct  83   NQPRALILAPTRELAVQIHADAEPLAQITG---LKLGLAYGGDGYDKQLKVLENGVDVLI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHVNLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPAAN---QRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL SF V++L+ + M+   +V+++ +      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SFRVRELAFENMNNAEYVEVEPDQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+ IIF  TK  C+++ 
Sbjct  251  -------------------------------------IEEEWPDRTIIFANTKHRCEDVW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F KGDV  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDDFTKGDVDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD++++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDREDYVHRIGRTGRAGANGHSISLACEE  363


 Score = 43.9 bits (102),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 22/53 (42%), Positives = 33/53 (62%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E   +   T IQA ++P  L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPQVIEALETKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKTMAF  63


>sp|Q10202|DBP3_SCHPO ATP-dependent RNA helicase dbp3 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp3 
PE=3 SV=1
Length=578

 Score = 143 bits (360),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 101/337 (30%), Positives = 159/337 (47%), Gaps = 55/337 (16%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P+ L+V P+RELA QT  N+      I    L+ +++ GG    +Q    +N   +++
Sbjct  235  SVPRVLVVSPTRELAIQTYENLNSL---IQGTNLKAVVVYGGAPKSEQARAAKNA-SVII  290

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GTPGRL DL++ G ++ SQV +LVLDEAD +L  G+   I  + +  P  T +G R Q +
Sbjct  291  GTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSR-QTV  349

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGED-SVPDTVHHVV-VPVNPKT-DRLWERLGK  461
              SAT     V+ L+   +  P  + +  ++ +    +  +V +  +P++ +R+ + L +
Sbjct  350  FFSATWPE-SVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRSKERMLDNLLR  408

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
             H+ +                                      K D+ +IF   K +   
Sbjct  409  KHLSSGG------------------------------------KDDKILIFVLYKKEAAR  432

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            +E               +++ V +HGD     R Q L  FK G    L+ TDVAARG+DI
Sbjct  433  VEGTL----------ARKYNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDI  482

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
              V  VINVT P   ++YVHRIGR GRA   G AI+ 
Sbjct  483  PKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITF  519


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F E+ V  ++ + ++  ++  PT IQA + P +L G DV+  AETGSGKT AF IP +Q
Sbjct  169  FDELDVSAKLREGLK--NYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQ  225


>sp|Q6CZD9|RHLB_PECAS ATP-dependent RNA helicase RhlB OS=Pectobacterium 
atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491 
GN=rhlB PE=3 SV=3
Length=430

 Score = 140 bits (353),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 114/353 (32%), Positives = 169/353 (48%), Gaps = 64/353 (18%)

Query  271  HSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
            H  NA+  QT    N P+ALI+ P+RELA Q  ++ +          L+  L  GG    
Sbjct  74   HPANAE-RQT----NQPRALIMAPTRELAVQIHSDAEALSHLTG---LKLGLAYGGDGYD  125

Query  331  DQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ  390
             QL VLENGVDI+VGT GRL D      +NL  ++ +VLDEAD +   G+   I  +  +
Sbjct  126  KQLKVLENGVDILVGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRR  185

Query  391  IPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVN  449
            +P  +   +RL ++  SATL S+ V++L+ + M+   +V+++ E      +   +  P N
Sbjct  186  MPATS---QRLNMLF-SATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRITEELFYPSN  240

Query  450  PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA  509
             +  RL + L                                         ++E   D+ 
Sbjct  241  EEKMRLLQTL-----------------------------------------LEEEWPDRC  259

Query  510  IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL  569
            IIF  TK  C+++        G     GH+     L GD    +R + LE F +G +  L
Sbjct  260  IIFANTKHRCEDV-------WGHLAADGHRVGL--LTGDVAQKKRLRILEEFTQGSIDIL  310

Query  570  ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            + TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA + G +ISL   E
Sbjct  311  VATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGQSGFSISLACEE  363


 Score = 46.6 bits (109),  Expect = 7e-04, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E   +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPQVIEALESKGFHYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAF  63


>sp|Q9C8J1|RH34_ARATH DEAD-box ATP-dependent RNA helicase 34 OS=Arabidopsis 
thaliana OX=3702 GN=RH34 PE=2 SV=2
Length=392

 Score = 139 bits (351),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 102/341 (30%), Positives = 159/341 (47%), Gaps = 64/341 (19%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + L++ PSRELA QT   I+    + +   ++    IGG +  + +  LE GV  V GTP
Sbjct  92   QVLVLSPSRELASQTEKTIQAIGAHTN---IQAHACIGGKSIGEDIKKLERGVHAVSGTP  148

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++  G L    V+ LVLDE+D +LS+G  D I  ++  +P        +QV + S
Sbjct  149  GRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPH------DIQVCLIS  202

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNP---KTDRLWERLGKSHI  464
            ATL   ++ +++EK M  P  + +K ++   + +    V V+    K D L +  G+  I
Sbjct  203  ATLPQ-EILEMTEKFMTDPVRILVKPDELTLEGIKQYYVDVDKEEWKFDTLCDLYGRLTI  261

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                                                      +QAIIFC T+   D L +
Sbjct  262  ------------------------------------------NQAIIFCNTRQKVDWLTE  279

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
                       +   F    +HGD++  ER   + +F+    R LI +DV ARGID+  V
Sbjct  280  KM---------RSSNFIVSSMHGDKRQKERDDIMNQFRSFKSRVLIASDVWARGIDVQTV  330

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
             +VIN  +P+  + Y+HRIGR GR  R G+AI+ V +   K
Sbjct  331  SHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSDMK  371


 Score = 46.2 bits (108),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 40/64 (63%), Gaps = 0/64 (0%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           + +F +MG+  ++ + V +  +  P++IQ  ++  IL G DV+  A++G+GKT   +I V
Sbjct  21  IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISV  80

Query  61  IQIV  64
            QIV
Sbjct  81  CQIV  84


>sp|A6QSQ0|FAL1_AJECN ATP-dependent RNA helicase FAL1 OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=FAL1 PE=3 
SV=1
Length=450

 Score = 140 bits (354),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 161/340 (47%), Gaps = 60/340 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+RELA Q  + +     Y++   ++    IGG    + +  L++G  +V GTP
Sbjct  95   QALVLSPTRELATQIQSVVMALGDYMN---VQCHACIGGTNVGEDIRKLDHGQHVVSGTP  151

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++ LVLDEAD LL++G+ + I  ++  +P  T      QV+V S
Sbjct  152  GRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPAT------QVVVVS  205

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL  +DV  ++ K M  P  + +K ++   + +    + V                   
Sbjct  206  ATL-PYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEK-----------------  247

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W      L   Y    I      QA+IFC T+   D L     
Sbjct  248  ---------------EEWK--FDTLCDLYDTLTIT-----QAVIFCNTRRKVDWL-----  280

Query  528  QQGGGPDK-KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                  DK +   F+   +HG+    ER   ++ F++G+ R LI TDV ARGID+  V  
Sbjct  281  -----TDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSL  335

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
            VIN  LP  ++NY+HRIGR GR  R G+AI+ V +E  ++
Sbjct  336  VINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRI  375


 Score = 43.9 bits (102),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 39/70 (56%), Gaps = 0/70 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +M +   + + +    +  P+ +Q+ +I  I  G D +  A++G+GKT  FSI ++Q
Sbjct  26  TFEDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ  85

Query  63  IVYETLKDQQ  72
           ++   L++ Q
Sbjct  86  VIDTVLRETQ  95


>sp|A3LQ01|DED1_PICST ATP-dependent RNA helicase DED1 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DED1 PE=3 SV=3
Length=647

 Score = 143 bits (361),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 102/342 (30%), Positives = 160/342 (47%), Gaps = 59/342 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P  L++ P+REL  Q  +  K+F        ++  ++ GG     Q+  L+ G D++V T
Sbjct  252  PTILVMAPTRELVSQIYDEAKKFAY---RSWVKPAVVYGGADIGQQIRNLDKGCDLLVAT  308

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ--IPQVTSDGKRLQVI  404
            PGRL DL+  G+++L+ +++LVLDEAD +L  G+   I  +  +  +P V    +  Q +
Sbjct  309  PGRLKDLLERGRVSLANIKYLVLDEADRMLDMGFEPQIRHIVQECDMPDV----QDRQTL  364

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT               FPT + +   D + D +   V  V   ++ + +++     
Sbjct  365  MFSAT---------------FPTDIQMLARDFLKDYIFLSVGRVGSTSENITQKI-----  404

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                ++ +D         E  S  + +L    A            IIF  TK   DNL  
Sbjct  405  ----LYVEDE--------EKKSVLLDLLSAGDA---------GLTIIFTETKRMADNLAD  443

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
            +   QG         F    +HGDR  +ER++ L  FK G    L+ T VAARG+DI  V
Sbjct  444  FLYDQG---------FPATAIHGDRSQYEREKALAAFKSGAAPILVATAVAARGLDIPNV  494

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
             +VIN  LP +  +YVHRIGR GRA  +G+A +      + V
Sbjct  495  AHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNKNV  536


 Score = 47.4 bits (111),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 20/41 (49%), Positives = 28/41 (68%), Gaps = 0/41 (0%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVY  65
            PT +Q  S+P++ GG D++  A+TGSGKTG F  PV+   Y
Sbjct  191  PTPVQKYSVPIVAGGRDLMACAQTGSGKTGGFLFPVLSESY  231


>sp|A2QC74|DBP2_ASPNC ATP-dependent RNA helicase dbp2 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=dbp2 PE=3 SV=1
Length=565

 Score = 142 bits (359),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 166/344 (48%), Gaps = 61/344 (18%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  LI+ P+RELA Q    I +F K   + ++R   + GGV    Q+  L  GV++ +
Sbjct  209  DGPIVLILAPTRELAVQIQAEISKFGK---SSRIRNTCVYGGVPKGPQIRDLSRGVEVCI  265

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D++  G+ NL +V +LVLDEAD +L  G+   I ++   I Q+  D    Q  
Sbjct  266  ATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKI---ISQIRPD---RQTC  319

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGED-SVPDTVHHVVVPVN--PKTDRLWERLGK  461
            + SAT    +V++L+   ++    V++   D S    +  +V  V+   K D++ + L K
Sbjct  320  MWSATWPK-EVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEK  378

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
                                                   I E++ ++ +IF  TK   D 
Sbjct  379  ---------------------------------------IMENRANKCLIFTGTKRIADE  399

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            + + F++Q G P         + +HGD++  ER   L  FK G    ++ TDVA+RGID+
Sbjct  400  ITR-FLRQDGWP--------ALSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDV  450

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
              + +V+N   P+  ++YVHRIGR GRA   G AI+   T+  K
Sbjct  451  RDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSK  494


 Score = 43.9 bits (102),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 23/59 (39%), Positives = 32/59 (54%), Gaps = 0/59 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             F E G    +   V+   +  PT IQ++  P+ L G DV+  AETGSGKT  + +P I
Sbjct  138  TFDEAGFPQYVLSEVKAQGFDRPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAI  196


>sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis 
thaliana OX=3702 GN=RH42 PE=1 SV=2
Length=1166

 Score = 145 bits (366),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 105/348 (30%), Positives = 171/348 (49%), Gaps = 69/348 (20%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  L++ P+REL +Q  ++I++F K +    +R + + GG     Q+S L+ G +IVV
Sbjct  601  DGPIGLVMAPTRELVQQIHSDIRKFSKPLG---IRCVPVYGGSGVAQQISELKRGTEIVV  657

Query  345  GTPGRLDDLV--STGKL-NLSQVRFLVLDEADGLLSQGYSDFINRMHNQI-PQVTSDGKR  400
             TPGR+ D++  S+GK+ NL +V FLV+DEAD +   G+   I R+   I P+       
Sbjct  658  CTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPE-------  710

Query  401  LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDR---LWE  457
             Q ++ SAT     V+ L+ K+++ P  + + G   V   +  +V  V P++DR   L E
Sbjct  711  RQTVLFSATFPR-QVETLARKVLNKPVEIQVGGRSVVNKDITQLV-EVRPESDRFLRLLE  768

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
             LG+                       WSE  KIL                  +F +++ 
Sbjct  769  LLGE-----------------------WSEKGKIL------------------VFVQSQE  787

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
             CD L +  I+           + C+ LHG +   +R+  +  FK      LI T VAAR
Sbjct  788  KCDALYRDMIKSS---------YPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAAR  838

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            G+D+  +  V+N   P+  ++YVHR+GR GRA R G A++ ++ +  K
Sbjct  839  GLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAK  886


 Score = 44.7 bits (104),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 21/66 (32%), Positives = 42/66 (64%), Gaps = 4/66 (6%)

Query  6    EMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVY  65
            + G+  +I   ++++++  P  IQ +++P+I+ G D +  A+TGSGKT  F +P+++   
Sbjct  533  QTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLR---  589

Query  66   ETLKDQ  71
              +KDQ
Sbjct  590  -HIKDQ  594


>sp|Q9P6U9|DED1_NEUCR ATP-dependent RNA helicase ded1 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=drh-9 PE=3 SV=1
Length=688

 Score = 144 bits (362),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 154/334 (46%), Gaps = 59/334 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P ALI+ P+REL  Q  +  ++F        +R  ++ GG     QL  +E G D++V T
Sbjct  280  PTALILAPTRELVSQIYDEARKFAY---RSWVRPCVVYGGADIGSQLRQIERGCDLLVAT  336

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM--HNQIPQVTSDGKRLQVI  404
            PGRL DL+  G+++L  +++LVLDEAD +L  G+   I R+     +P+V       Q +
Sbjct  337  PGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPKVNDR----QTL  392

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT               FP  + +   D + D +   V  V   ++ + +++     
Sbjct  393  MFSAT---------------FPRDIQILARDFLKDYIFLSVGRVGSTSENITQKV-----  432

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                 + +D                 I K    +  +  H     +IF  TK   D+L  
Sbjct  433  ----EYVED-----------------IDKRSVLLDILHTHAGGLTLIFVETKRMADSLSD  471

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
            + I Q          F    +HGDR   ER++ LE F+ G    L+ T VAARG+DI  V
Sbjct  472  FLINQ---------NFPATSIHGDRTQRERERALEMFRNGRCPILVATAVAARGLDIPNV  522

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
             +VIN  LP +  +YVHRIGR GRA   G+A + 
Sbjct  523  THVINYDLPTDIDDYVHRIGRTGRAGNTGIATAF  556


 Score = 49.7 bits (117),  Expect = 8e-05, Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%), Gaps = 0/44 (0%)

Query  24   LPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYET  67
            +PT +Q  SIP+++GG D++  A+TGSGKTG F  P++   + T
Sbjct  216  VPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQSFHT  259


>sp|Q0UY62|DBP3_PHANO ATP-dependent RNA helicase DBP3 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=DBP3 PE=3 SV=1
Length=592

 Score = 142 bits (359),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 110/338 (33%), Positives = 165/338 (49%), Gaps = 52/338 (15%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            KA+IV P+RELA Q  +   Q         L  + + GGV    Q++       IVV TP
Sbjct  252  KAVIVSPTRELAVQIYD---QLVALAHPAGLSVVCVYGGVPKDPQVAACRKA-HIVVATP  307

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GRL+DL+  G  +LS   ++VLDEAD +L +G+ + I ++ +Q P      K+ Q ++ +
Sbjct  308  GRLNDLIGDGSADLSNADYVVLDEADRMLDKGFEEPIRQIISQTP------KKRQTLMFT  361

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT     V+ L+   M  P  + +    S         +  N +  +L E L        
Sbjct  362  ATWPP-SVRDLASTFMVSPVRITIGDNQSGE-------LRANVRIKQLVEVL--------  405

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
            D HAK+               +++LK   +     ++K D+ ++FC  K +   +E +  
Sbjct  406  DPHAKEQ------------RLLQLLKQYQS----GKNKDDRILVFCLYKKEAMRIENFIR  449

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
             +G         F    +HGD    +R  +L  FK+G V  L+ TDVAARG+DI  V  V
Sbjct  450  MKG---------FRVGGIHGDLSQEKRSASLAAFKEGQVPLLVATDVAARGLDIPAVKLV  500

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            INVT P   ++YVHRIGR GRA + GLAI+   TE +K
Sbjct  501  INVTFPLTAEDYVHRIGRTGRAGKEGLAITFF-TEHDK  537


 Score = 51.2 bits (121),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 24/56 (43%), Positives = 36/56 (64%), Gaps = 0/56 (0%)

Query  22   WLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKG  77
            +  PT IQA + P +L G D++  AETGSGKT AF +P ++ +    KD+++G K 
Sbjct  198  FTAPTPIQAATWPFLLSGRDMVGVAETGSGKTLAFGVPCVRAILSLPKDKRKGIKA  253


>sp|Q4WEB4|FAL1_ASPFU ATP-dependent RNA helicase fal1 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=fal1 PE=3 SV=2
Length=398

 Score = 139 bits (350),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 104/340 (31%), Positives = 160/340 (47%), Gaps = 60/340 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+RELA Q  + I     Y++   ++    IGG    + +  L+ G  +V GTP
Sbjct  94   QALVLSPTRELATQIQSVIMALGDYMN---VQCHACIGGTNIGEDIRKLDYGQHVVSGTP  150

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++ LVLDEAD LL++G+ + I  ++  +P  T      QV+V S
Sbjct  151  GRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPAT------QVVVVS  204

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL  +DV  ++ K M  P  V +K ++   + +    + V                   
Sbjct  205  ATL-PYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEK-----------------  246

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W      L   Y    I      QA+IFC T+   D L     
Sbjct  247  ---------------EEWK--FDTLCDLYDTLTIT-----QAVIFCNTRRKVDWL-----  279

Query  528  QQGGGPDK-KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                  DK +   F+   +HG+    ER   ++ F++G+ R LI TDV ARGID+  V  
Sbjct  280  -----TDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSL  334

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
            VIN  LP  ++NY+HRIGR GR  R G+AI+ V ++  ++
Sbjct  335  VINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRI  374


 Score = 41.6 bits (96),  Expect = 0.021, Method: Compositional matrix adjust.
 Identities = 18/70 (26%), Positives = 39/70 (56%), Gaps = 0/70 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +M +   + + +    +  P+ +Q+ +I  I  G D +  A++G+GKT  FSI ++Q
Sbjct  25  TFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSIGILQ  84

Query  63  IVYETLKDQQ  72
           ++   +++ Q
Sbjct  85  VIDTVVRETQ  94


>sp|Q2UAK1|FAL1_ASPOR ATP-dependent RNA helicase fal1 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=fal1 
PE=3 SV=1
Length=398

 Score = 139 bits (350),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 104/340 (31%), Positives = 160/340 (47%), Gaps = 60/340 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+RELA Q  + I     Y++   ++    IGG    + +  L+ G  +V GTP
Sbjct  94   QALVLSPTRELATQIQSVIMALGDYMN---VQCHACIGGTNIGEDIRKLDYGQHVVSGTP  150

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++ LVLDEAD LL++G+ + I  ++  +P  T      QV+V S
Sbjct  151  GRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPAT------QVVVVS  204

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL  +DV  ++ K M  P  V +K ++   + +    + V                   
Sbjct  205  ATL-PYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEK-----------------  246

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W      L   Y    I      QA+IFC T+   D L     
Sbjct  247  ---------------EEWK--FDTLCDLYDTLTIT-----QAVIFCNTRRKVDWL-----  279

Query  528  QQGGGPDK-KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                  DK +   F+   +HG+    ER   ++ F++G+ R LI TDV ARGID+  V  
Sbjct  280  -----TDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSL  334

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
            VIN  LP  ++NY+HRIGR GR  R G+AI+ V ++  ++
Sbjct  335  VINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRI  374


 Score = 42.7 bits (99),  Expect = 0.009, Method: Compositional matrix adjust.
 Identities = 18/70 (26%), Positives = 39/70 (56%), Gaps = 0/70 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +M +   + + +    +  P+ +Q+ +I  I  G D +  A++G+GKT  FSI ++Q
Sbjct  25  TFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ  84

Query  63  IVYETLKDQQ  72
           ++   +++ Q
Sbjct  85  VIDTVVRESQ  94


>sp|Q09719|DBP10_SCHPO ATP-dependent RNA helicase dbp10 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp10 
PE=1 SV=1
Length=848

 Score = 144 bits (363),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 108/342 (32%), Positives = 159/342 (46%), Gaps = 36/342 (11%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+RELA QT+  +K F K  D   LR + I+GGV+  +Q S+L    DIVV TP
Sbjct  141  RALILSPNRELALQTVKVVKDFSKGTD---LRSVAIVGGVSLEEQFSLLSGKPDIVVATP  197

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR   L    KL LS + ++V DEAD L   G++  +  + + +P         Q ++ S
Sbjct  198  GRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSR------QTLLFS  251

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL    V   ++  +  P  V L  E  V   +      V     +  ER         
Sbjct  252  ATLPRTLVD-FAKAGLQDPVLVRLDVESKVSADLQSAFFSV-----KTAEREAALLCILQ  305

Query  468  DV---HAKDNTRP----GANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
            D+     KDN RP      N+P+    A+     E A++  +    D  ++F  TK   +
Sbjct  306  DIIKLPLKDNVRPREIGNVNNPKKRKRAL-----ELALKGSESGSPDSTLVFVPTKHHVE  360

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             + +  +Q G         +S   ++G      R   +  F+ G    L+ TDVA+RGID
Sbjct  361  YVSELLVQAG---------YSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGID  411

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            I  +  VIN   P + + +VHR+GR  RA R G A SLV  E
Sbjct  412  IPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRAE  453


 Score = 57.8 bits (138),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 0/67 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F  MG+   + +A+ +  +  PT IQ ++IPL+L G DV+  A TGSGKT AF IP+I+ 
Sbjct  71   FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH  130

Query  64   VYETLKD  70
            +  TL +
Sbjct  131  LKSTLAN  137


>sp|Q6C347|FAL1_YARLI ATP-dependent RNA helicase FAL1 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=FAL1 PE=3 
SV=1
Length=397

 Score = 139 bits (349),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 104/336 (31%), Positives = 154/336 (46%), Gaps = 60/336 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +A+++ P+RELA Q  + I     Y++   ++    IGG +    +  LE G  +V GTP
Sbjct  94   QAMVLSPTRELATQIQSVILALGDYMN---VQCHACIGGTSLSVDMKKLEAGQQVVSGTP  150

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR  D++  G L    ++ L+LDEAD LL++G+ + I  ++  +P  T      QV+V S
Sbjct  151  GRCLDMIKKGCLRTKNLKMLILDEADELLNKGFQEQIYDIYRYLPAAT------QVVVVS  204

Query  408  ATL-HSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            ATL HS  V +++ K M  P  + +K ++   + +    + V                  
Sbjct  205  ATLPHS--VLEMTSKFMTDPVRILVKRDELTLEGLKQYFIAVEQ----------------  246

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                            E W      L   Y    I      QA+IFC TK   D L Q  
Sbjct  247  ----------------EEWK--FDTLCDLYDTLTIT-----QAVIFCNTKKKVDWLTQQM  283

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                     K + F+   +HGD    +R   +  F+ G  R LI TDV ARGID+  V  
Sbjct  284  ---------KDNNFTVCSMHGDMAQKDRDSIMNEFRSGRSRVLISTDVWARGIDVQQVSL  334

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            VIN  LP  ++NY+HRIGR GR  R G+AI+    +
Sbjct  335  VINYDLPPNRENYIHRIGRSGRFGRKGVAINFATND  370


 Score = 41.2 bits (95),  Expect = 0.029, Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 0/62 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  M +  ++ + +    +  P+ IQ+ +I  I+ G D +  A++G+GKT  FSI +++
Sbjct  25  TFESMDLKDDLLRGIYAYGFEAPSAIQSRAITQIIKGRDTIAQAQSGTGKTATFSISMLE  84

Query  63  IV  64
           ++
Sbjct  85  VI  86


>sp|A7EM88|FAL1_SCLS1 ATP-dependent RNA helicase fal1 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=fal1 PE=3 SV=1
Length=399

 Score = 139 bits (350),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 104/340 (31%), Positives = 160/340 (47%), Gaps = 60/340 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+RELA Q  + +     Y++   ++    IGG    + +  L+ G  IV GTP
Sbjct  95   QALVLSPTRELATQIQSVVMALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHIVSGTP  151

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++ LVLDEAD LL++G+ + I  ++  +P  T      QV+V S
Sbjct  152  GRVADMIRRRNLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPAT------QVVVVS  205

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL  +DV  ++ K M  P  + +K ++   + +    + V                   
Sbjct  206  ATL-PYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEK-----------------  247

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W      L   Y    I      QA+IFC T+   D L     
Sbjct  248  ---------------EEWK--FDTLCDLYDTLTIT-----QAVIFCNTRRKVDWL-----  280

Query  528  QQGGGPDK-KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                  DK +   F+   +HG+    ER   ++ F++G+ R LI TDV ARGID+  V  
Sbjct  281  -----TDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSL  335

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
            VIN  LP  ++NY+HRIGR GR  R G+AI+ V +E  ++
Sbjct  336  VINYDLPVNRENYIHRIGRSGRFGRKGVAINFVTSEDVRI  375


 Score = 41.2 bits (95),  Expect = 0.026, Method: Compositional matrix adjust.
 Identities = 18/70 (26%), Positives = 39/70 (56%), Gaps = 0/70 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +M +   + + +    +  P+ +Q+ +I  I  G D +  A++G+GKT  FSI ++Q
Sbjct  26  TFQDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQ  85

Query  63  IVYETLKDQQ  72
           ++   +++ Q
Sbjct  86  VIDTAVRETQ  95


>sp|Q6BZ77|DBP3_DEBHA ATP-dependent RNA helicase DBP3 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP3 PE=3 SV=1
Length=527

 Score = 141 bits (356),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 109/342 (32%), Positives = 163/342 (48%), Gaps = 61/342 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            K L + P+RELA Q  +N+        N  L+ + + GGV+  +Q+S L N   +VV TP
Sbjct  188  KVLCISPTRELALQIYDNLVDLTA---NTPLKCVAVYGGVSKHEQVSSLRNA-SVVVATP  243

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GRL DL++ G L+L  + +LVLDEAD +L +G+   I  +  Q    T+   R Q ++ +
Sbjct  244  GRLIDLLNDGALSLDSIEYLVLDEADRMLEKGFEQDIKSVMQQ----TNHANR-QTLMFT  298

Query  408  ATLHSFDVKKLSEKIMHFPTWVDL--KGEDSVPDTVHHVVVPVNP--KTDRLWERLGKSH  463
            AT    +V++L+   M+ P  V +  + E S    +  +V  + P  K  +L   L K  
Sbjct  299  ATWPK-EVRELASTFMNSPVKVSIGDRNELSANKRITQIVEVIEPYDKEKKLLSLLRKY-  356

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                        + G+N                        K D+ +IF   K +   +E
Sbjct  357  ------------QSGSN------------------------KDDKVLIFALYKKEATRIE  380

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
               ++         + F    +HGD    +R   L  FK G    L+ TDVAARG+DI  
Sbjct  381  NLLVR---------NSFKVSAVHGDLSQQQRTSALGAFKAGKTTLLLATDVAARGLDIPN  431

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            V  VIN+T P   ++YVHRIGR GRA + G+A +L  TE EK
Sbjct  432  VKVVINLTFPLTVEDYVHRIGRTGRAGQTGIAHTLF-TEHEK  472


 Score = 47.8 bits (112),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 26/61 (43%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F ++ +   IA  + +  +  PT IQA S P +L G DV+  AETGSGKT AF +P 
Sbjct  118  LLGFDQIDLDSRIASVISK--FPTPTPIQAVSWPYLLSGKDVIGVAETGSGKTFAFGVPA  175

Query  61   I  61
            I
Sbjct  176  I  176


>sp|Q9HXE5|RHLB_PSEAE ATP-dependent RNA helicase RhlB OS=Pseudomonas 
aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 
/ JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=rhlB 
PE=3 SV=1
Length=397

 Score = 139 bits (349),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 105/333 (32%), Positives = 156/333 (47%), Gaps = 58/333 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGV-DIVVG  345
            P+ALI+ P+REL  Q   +     KY     L  +  +GG+    QL  LE    DI+V 
Sbjct  85   PRALIIAPTRELVVQIAKDAAALTKYTG---LNVMTFVGGMDFDKQLKQLEARFCDILVA  141

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGRL D    G+++L  V  +VLDEAD +L  G   FI ++   I Q    G+R Q ++
Sbjct  142  TPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMG---FIPQVRQIIRQTPHKGER-QTLL  197

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT    DV  L+++    P  V+++ E+   DTV   V  V                 
Sbjct  198  FSATFTD-DVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVA----------------  240

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                                S+  K+L        + ++  ++ ++F   K +   +E+ 
Sbjct  241  -------------------GSDKYKLLYN-----LVAQNNWERVMVFANRKDEVRRIEER  276

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
              + G          S   + GD   H+R + LE F++G +R L+ TDVA RGI I G+ 
Sbjct  277  LTKDG---------ISAAQMSGDVPQHKRIRTLEGFREGKIRVLVATDVAGRGIHIDGIS  327

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            +VIN TLP++  +YVHRIGR GRA   G +IS 
Sbjct  328  HVINFTLPEDPDDYVHRIGRTGRAGASGTSISF  360


 Score = 42.0 bits (97),  Expect = 0.016, Method: Compositional matrix adjust.
 Identities = 21/64 (33%), Positives = 36/64 (56%), Gaps = 0/64 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F +  + P +  A+ ++ +   T IQA+ +   L G D +  A+TG+GKT AF I +I  
Sbjct  11  FHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQ  70

Query  64  VYET  67
           + +T
Sbjct  71  LLQT  74


>sp|Q02S21|RHLB_PSEAB ATP-dependent RNA helicase RhlB OS=Pseudomonas 
aeruginosa (strain UCBPP-PA14) OX=208963 GN=rhlB PE=3 
SV=1
Length=397

 Score = 139 bits (349),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 105/333 (32%), Positives = 156/333 (47%), Gaps = 58/333 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGV-DIVVG  345
            P+ALI+ P+REL  Q   +     KY     L  +  +GG+    QL  LE    DI+V 
Sbjct  85   PRALIIAPTRELVVQIAKDAAALTKYTG---LNVMTFVGGMDFDKQLKQLEARFCDILVA  141

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGRL D    G+++L  V  +VLDEAD +L  G   FI ++   I Q    G+R Q ++
Sbjct  142  TPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMG---FIPQVRQIIRQTPHKGER-QTLL  197

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT    DV  L+++    P  V+++ E+   DTV   V  V                 
Sbjct  198  FSATFTD-DVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVA----------------  240

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                                S+  K+L        + ++  ++ ++F   K +   +E+ 
Sbjct  241  -------------------GSDKYKLLYN-----LVAQNNWERVMVFANRKDEVRRIEER  276

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
              + G          S   + GD   H+R + LE F++G +R L+ TDVA RGI I G+ 
Sbjct  277  LTKDG---------ISAAQMSGDVPQHKRIRTLEGFREGKIRVLVATDVAGRGIHIDGIS  327

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            +VIN TLP++  +YVHRIGR GRA   G +IS 
Sbjct  328  HVINFTLPEDPDDYVHRIGRTGRAGASGTSISF  360


 Score = 42.0 bits (97),  Expect = 0.016, Method: Compositional matrix adjust.
 Identities = 21/64 (33%), Positives = 36/64 (56%), Gaps = 0/64 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F +  + P +  A+ ++ +   T IQA+ +   L G D +  A+TG+GKT AF I +I  
Sbjct  11  FHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQ  70

Query  64  VYET  67
           + +T
Sbjct  71  LLQT  74


>sp|B7UUT0|RHLB_PSEA8 ATP-dependent RNA helicase RhlB OS=Pseudomonas 
aeruginosa (strain LESB58) OX=557722 GN=rhlB PE=3 SV=1
Length=397

 Score = 139 bits (349),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 105/333 (32%), Positives = 156/333 (47%), Gaps = 58/333 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGV-DIVVG  345
            P+ALI+ P+REL  Q   +     KY     L  +  +GG+    QL  LE    DI+V 
Sbjct  85   PRALIIAPTRELVVQIAKDAAALTKYTG---LNVMTFVGGMDFDKQLKQLEARFCDILVA  141

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGRL D    G+++L  V  +VLDEAD +L  G   FI ++   I Q    G+R Q ++
Sbjct  142  TPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMG---FIPQVRQIIRQTPHKGER-QTLL  197

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT    DV  L+++    P  V+++ E+   DTV   V  V                 
Sbjct  198  FSATFTD-DVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVA----------------  240

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                                S+  K+L        + ++  ++ ++F   K +   +E+ 
Sbjct  241  -------------------GSDKYKLLYN-----LVAQNNWERVMVFANRKDEVRRIEER  276

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
              + G          S   + GD   H+R + LE F++G +R L+ TDVA RGI I G+ 
Sbjct  277  LTKDG---------ISAAQMSGDVPQHKRIRTLEGFREGKIRVLVATDVAGRGIHIDGIS  327

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            +VIN TLP++  +YVHRIGR GRA   G +IS 
Sbjct  328  HVINFTLPEDPDDYVHRIGRTGRAGASGTSISF  360


 Score = 42.0 bits (97),  Expect = 0.016, Method: Compositional matrix adjust.
 Identities = 21/64 (33%), Positives = 36/64 (56%), Gaps = 0/64 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F +  + P +  A+ ++ +   T IQA+ +   L G D +  A+TG+GKT AF I +I  
Sbjct  11  FHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQ  70

Query  64  VYET  67
           + +T
Sbjct  71  LLQT  74


>sp|A7MQI2|RHLB_CROS8 ATP-dependent RNA helicase RhlB OS=Cronobacter 
sakazakii (strain ATCC BAA-894) OX=290339 GN=rhlB PE=3 
SV=1
Length=421

 Score = 139 bits (351),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 113/359 (31%), Positives = 172/359 (48%), Gaps = 66/359 (18%)

Query  265  YIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
            Y++    + N QV Q       P+ALI+ P+RELA Q  ++ +   +      ++  L  
Sbjct  70   YLLSHPAAENRQVNQ-------PRALIMAPTRELAVQIHSDAEPLAEATG---IKLGLAY  119

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG     QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I
Sbjct  120  GGDGYDKQLKVLESGVDILIGTTGRLIDYTKQNHVNLGAIQVVVLDEADRMYDLGFIKDI  179

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HH  443
              +  ++P  T   +RL ++  SATL S+ V++L+ + M+   +V+++ E      +   
Sbjct  180  RWLFRRMPAAT---ERLNMLF-SATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEE  234

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
            +  P N +  RL + L                                         I+E
Sbjct  235  LFYPSNEEKMRLLQTL-----------------------------------------IEE  253

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
               D+AIIF  TK  C+++        G     GH+     L GD    +R + L+ F +
Sbjct  254  EWPDRAIIFANTKHRCEDI-------WGHLAADGHRVGL--LTGDVAQKKRLRILDEFTR  304

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            GD+  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  305  GDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 47.0 bits (110),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P + QA+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPVVVQALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|A6TGG9|RHLB_KLEP7 ATP-dependent RNA helicase RhlB OS=Klebsiella 
pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 
78578) OX=272620 GN=rhlB PE=3 SV=1
Length=421

 Score = 139 bits (350),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 109/339 (32%), Positives = 164/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAQATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P  T   +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAT---QRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +V+++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 ++E   D+AI+F  TK  C+++ 
Sbjct  251  -------------------------------------LEEEWPDRAIVFANTKHRCEDI-  272

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
                   G     GH+     L GD    +R + LE F +GD+  L+ TDVAARG+ I  
Sbjct  273  ------WGHLAADGHRVGL--LTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 43.5 bits (101),  Expect = 0.006, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P + +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPAVIEALEKKGFHNCTPIQALALPLTLEGRDVAGQAQTGTGKTMAF  63


>sp|A6VKC3|RHLB_ACTSZ ATP-dependent RNA helicase RhlB OS=Actinobacillus 
succinogenes (strain ATCC 55618 / DSM 22257 / CCUG 
43843 / 130Z) OX=339671 GN=rhlB PE=3 SV=1
Length=413

 Score = 139 bits (350),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 106/340 (31%), Positives = 164/340 (48%), Gaps = 57/340 (17%)

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            Q  F+ N P+ALI+ P+RELA Q  ++ +   +     KLR  L  GG     QL  +EN
Sbjct  75   QPDFITNQPRALILAPTRELAVQIAHDAESLAQ---TTKLRIALAYGGDGYDKQLKTIEN  131

Query  339  GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
            GVDI++GT GR+ D V  G +  + ++ +VLDEAD +   G+   I  +  + P   S  
Sbjct  132  GVDILIGTTGRVIDYVKQGIIRFNDIQVVVLDEADRMFDLGFIKDIRYLLRKCPAPKS--  189

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER  458
             RL ++  SATL S+ V++L+ + M+ P +++++              P+     R+ E 
Sbjct  190  -RLTMLF-SATL-SYKVRELAFEDMNDPEYIEIE--------------PLQKTGHRIKEE  232

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
            L     R                 +  +  + +L+ E+  R          IIF  TK  
Sbjct  233  LFYPSNR-----------------DKMALLMTLLEEEWPER---------CIIFANTKHR  266

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
            C+ +  Y    G              L GD    +R   L++F  G++  L+ TDVAARG
Sbjct  267  CEEIWGYLAADGQ---------RVGLLTGDVAQKKRLALLKQFTDGELDILVATDVAARG  317

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            + I  V +V N  LPD++++YVHRIGR GRA   G++IS 
Sbjct  318  LHIPDVTHVFNYDLPDDREDYVHRIGRTGRAGESGMSISF  357


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           F+++ + P+I  A+ + ++   T IQA S+PL L G DV   A+TG+GKT AF
Sbjct  11  FADLPLHPQILAALNDQNFEYCTPIQALSLPLTLQGKDVAGQAQTGTGKTMAF  63


>sp|A1D071|FAL1_NEOFI ATP-dependent RNA helicase fal1 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=fal1 
PE=3 SV=1
Length=399

 Score = 139 bits (349),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 104/340 (31%), Positives = 160/340 (47%), Gaps = 60/340 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+RELA Q  + I     Y++   ++    IGG    + +  L+ G  +V GTP
Sbjct  95   QALVLSPTRELATQIQSVIMALGDYMN---VQCHACIGGTNIGEDIRKLDYGQHVVSGTP  151

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++ LVLDEAD LL++G+ + I  ++  +P  T      QV+V S
Sbjct  152  GRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPAT------QVVVVS  205

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL  +DV  ++ K M  P  V +K ++   + +    + V                   
Sbjct  206  ATL-PYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEK-----------------  247

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W      L   Y    I      QA+IFC T+   D L     
Sbjct  248  ---------------EEWK--FDTLCDLYDTLTIT-----QAVIFCNTRRKVDWL-----  280

Query  528  QQGGGPDK-KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                  DK +   F+   +HG+    ER   ++ F++G+ R LI TDV ARGID+  V  
Sbjct  281  -----TDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSL  335

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
            VIN  LP  ++NY+HRIGR GR  R G+AI+ V ++  ++
Sbjct  336  VINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRI  375


 Score = 42.7 bits (99),  Expect = 0.011, Method: Compositional matrix adjust.
 Identities = 18/70 (26%), Positives = 39/70 (56%), Gaps = 0/70 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +M +   + + +    +  P+ +Q+ +I  I  G D +  A++G+GKT  FSI ++Q
Sbjct  26  TFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ  85

Query  63  IVYETLKDQQ  72
           ++   +++ Q
Sbjct  86  VIDTVVRETQ  95


>sp|Q5AUL4|FAL1_EMENI ATP-dependent RNA helicase fal1 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=fal1 PE=3 SV=1
Length=399

 Score = 139 bits (349),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 104/340 (31%), Positives = 160/340 (47%), Gaps = 60/340 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+RELA Q  + I     Y++   ++    IGG    + +  L+ G  +V GTP
Sbjct  95   QALVLSPTRELATQIQSVIMALGDYMN---VQCHACIGGTNIGEDIRKLDYGQHVVSGTP  151

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++ LVLDEAD LL++G+ + I  ++  +P  T      QV+V S
Sbjct  152  GRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPAT------QVVVVS  205

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL  +DV  ++ K M  P  V +K ++   + +    + V                   
Sbjct  206  ATL-PYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEK-----------------  247

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W      L   Y    I      QA+IFC T+   D L     
Sbjct  248  ---------------EEWK--FDTLCDLYDTLTIT-----QAVIFCNTRRKVDWL-----  280

Query  528  QQGGGPDK-KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                  DK +   F+   +HG+    ER   ++ F++G+ R LI TDV ARGID+  V  
Sbjct  281  -----TDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSL  335

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
            VIN  LP  ++NY+HRIGR GR  R G+AI+ V ++  ++
Sbjct  336  VINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRI  375


 Score = 41.2 bits (95),  Expect = 0.029, Method: Compositional matrix adjust.
 Identities = 18/70 (26%), Positives = 38/70 (54%), Gaps = 0/70 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +M +   + + +    +  P+ +Q+ +I  I  G D +  A++G+GKT  FSI  +Q
Sbjct  26  TFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISALQ  85

Query  63  IVYETLKDQQ  72
           ++   +++ Q
Sbjct  86  VIDTVVRETQ  95


>sp|C6DHF5|RHLB_PECCP ATP-dependent RNA helicase RhlB OS=Pectobacterium 
carotovorum subsp. carotovorum (strain PC1) OX=561230 
GN=rhlB PE=3 SV=1
Length=430

 Score = 139 bits (350),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 113/353 (32%), Positives = 169/353 (48%), Gaps = 64/353 (18%)

Query  271  HSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
            H  NA+  QT    N P+ALI+ P+RELA Q  ++ +          L+  L  GG    
Sbjct  74   HPANAE-RQT----NQPRALIMAPTRELAVQIHSDAEALSHLTG---LKLGLAYGGDGYD  125

Query  331  DQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ  390
             QL VLENGVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  +
Sbjct  126  KQLKVLENGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRR  185

Query  391  IPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVN  449
            +P      +RL ++  SATL S+ V++L+ + M+   +V+++ E      +   +  P N
Sbjct  186  MPPA---AQRLNMLF-SATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSN  240

Query  450  PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA  509
             +  RL + L                                         ++E   D+ 
Sbjct  241  EEKMRLLQTL-----------------------------------------LEEEWPDRC  259

Query  510  IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL  569
            IIF  TK  C+++        G     GH+     L GD    +R + LE F +G++  L
Sbjct  260  IIFANTKHRCEDI-------WGHLAADGHRVGL--LTGDVAQKKRLRILEEFTQGNLDIL  310

Query  570  ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            + TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA + G +ISL   E
Sbjct  311  VATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGQSGFSISLACEE  363


 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E   +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPQVIEALESKGFHNCTPIQALALPLALSGRDVAGQAQTGTGKTLAF  63


>sp|Q2U070|DBP2_ASPOR ATP-dependent RNA helicase dbp2 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp2 
PE=3 SV=1
Length=554

 Score = 141 bits (356),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 101/341 (30%), Positives = 168/341 (49%), Gaps = 55/341 (16%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  L++ P+RELA Q    I +F K   + ++R   + GGV    Q+  L  GV++ +
Sbjct  202  DGPIVLVLAPTRELAVQIQAEITKFGK---SSRIRNTCVYGGVPKGPQIRDLSRGVEVCI  258

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D++  G+ NL +V +LVLDEAD +L  G+   I ++   I Q+  D    Q  
Sbjct  259  ATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKI---ISQIRPD---RQTC  312

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT    +V++L+   ++          D +   +  + +  N +  ++ E +     
Sbjct  313  MWSATWPK-EVRQLASDFLN----------DYIQVNIGSMDLSANHRITQIVEVVS----  357

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
               D   +D                K++K    +  I E++ ++ +IF  TK   D + +
Sbjct  358  ---DFEKRD----------------KMIK---HLEKIMENRGNKCLIFTGTKRIADEITR  395

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
             F++Q G P         + +HGD++  ER   L  FK G    ++ TDVA+RGID+  +
Sbjct  396  -FLRQDGWP--------ALSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDI  446

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
             +V+N   P+  ++YVHRIGR GRA   G AI+   T+  K
Sbjct  447  THVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSK  487


 Score = 44.7 bits (104),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 23/59 (39%), Positives = 33/59 (56%), Gaps = 0/59 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             F E G    +   V+   +  PT IQ++  P+ L G DV+  AETGSGKT ++ +P I
Sbjct  131  TFDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAI  189


>sp|A1C6C4|DBP2_ASPCL ATP-dependent RNA helicase dbp2 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp2 PE=3 SV=1
Length=549

 Score = 141 bits (356),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 102/342 (30%), Positives = 166/342 (49%), Gaps = 57/342 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  L++ P+RELA Q    I +F K   + ++R   + GGV    Q+  L  GV++ +
Sbjct  197  DGPIVLVLAPTRELAVQIQTEITKFGK---SSRIRNTCVYGGVPKGPQIRDLSRGVEVCI  253

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D++  G+ NL +V +LVLDEAD +L  G+   I ++   I Q+  D    Q  
Sbjct  254  ATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKI---ISQIRPD---RQTC  307

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGED-SVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            + SAT    +V++L+   ++    V++   D S    +  +V  V+              
Sbjct  308  MWSATWPK-EVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVS--------------  352

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                D   +D                K++K    +  I E + ++ +IF  TK   D + 
Sbjct  353  ----DFEKRD----------------KMIK---HLEKIMEDRSNKILIFTGTKRIADEIT  389

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
            + F++Q G P         + +HGD++  ER   L  FK G    ++ TDVA+RGID+  
Sbjct  390  R-FLRQDGWP--------ALSIHGDKQQQERDWVLNEFKAGKSPIMVATDVASRGIDVRD  440

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            + +V+N   P+  ++Y+HRIGR GRA   G AI+   T+  K
Sbjct  441  ITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNSK  482


 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 23/59 (39%), Positives = 32/59 (54%), Gaps = 0/59 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             F E G    +   V+   +  PT IQ++  P+ L G DV+  AETGSGKT  + +P I
Sbjct  126  TFDEAGFPQYVLSEVKSQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAI  184


>sp|Q10I26|IF43B_ORYSJ Eukaryotic initiation factor 4A-III homolog 
B OS=Oryza sativa subsp. japonica OX=39947 GN=EIF4A3B PE=1 
SV=1
Length=404

 Score = 139 bits (349),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 104/358 (29%), Positives = 165/358 (46%), Gaps = 63/358 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+RELA QT   +     YI+   ++    IGG +  + +  LE+GV +V GTP
Sbjct  101  QALILSPTRELAAQTERVMLAIGDYIN---IQVHACIGGKSIGEDIRKLEHGVHVVSGTP  157

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++ L+LDEAD +L +G+ D I  ++  +P        LQV + S
Sbjct  158  GRVCDMIKRRTLRTRAIKLLILDEADEMLGRGFKDQIYDVYRYLP------PELQVCLIS  211

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL   ++ +++ K M  P  + +K ++   + +    V V                   
Sbjct  212  ATL-PHEILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEK-----------------  253

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W       K +          + QA+IFC TK   D L +   
Sbjct  254  ---------------EEW-------KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTERM-  290

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
                    + + F+   +HGD    ER   +  F+ G  R LI TDV ARG+D+  V  V
Sbjct  291  --------RSNNFTVSAMHGDMPQKERDAIMGEFRSGATRVLITTDVWARGLDVQQVSLV  342

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            IN  LP+ ++ Y+HRIGR GR  R G+AI+ V  E  ++   +     +  Y+T++ E
Sbjct  343  INYDLPNNRELYIHRIGRSGRFGRKGVAINFVKKEDIRILRDI-----EQYYSTQIDE  395


 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 43/72 (60%), Gaps = 0/72 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +++F +MG+  ++ + +    +  P+ IQ  ++  I+ G DV+  A++G+GKT   S+ V
Sbjct  30   ISSFDQMGIREDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSV  89

Query  61   IQIVYETLKDQQ  72
             QIV   +++ Q
Sbjct  90   CQIVDTAVREVQ  101


>sp|A6S4N4|FAL1_BOTFB ATP-dependent RNA helicase fal1 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=fal1 PE=3 SV=1
Length=399

 Score = 138 bits (348),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 104/340 (31%), Positives = 160/340 (47%), Gaps = 60/340 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+RELA Q  + +     Y++   ++    IGG    + +  L+ G  IV GTP
Sbjct  95   QALVLSPTRELATQIQSVVMALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHIVSGTP  151

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++ LVLDEAD LL++G+ + I  ++  +P  T      QV+V S
Sbjct  152  GRVADMIRRRNLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPAT------QVVVVS  205

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL  +DV  ++ K M  P  + +K ++   + +    + V                   
Sbjct  206  ATL-PYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEK-----------------  247

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W      L   Y    I      QA+IFC T+   D L     
Sbjct  248  ---------------EDWK--FDTLCDLYDTLTIT-----QAVIFCNTRRKVDWL-----  280

Query  528  QQGGGPDK-KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                  DK +   F+   +HG+    ER   ++ F++G+ R LI TDV ARGID+  V  
Sbjct  281  -----TDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSL  335

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
            VIN  LP  ++NY+HRIGR GR  R G+AI+ V +E  ++
Sbjct  336  VINYDLPVNRENYIHRIGRSGRFGRKGVAINFVTSEDVRI  375


 Score = 41.6 bits (96),  Expect = 0.026, Method: Compositional matrix adjust.
 Identities = 18/70 (26%), Positives = 39/70 (56%), Gaps = 0/70 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +M +   + + +    +  P+ +Q+ +I  I  G D +  A++G+GKT  FSI ++Q
Sbjct  26  TFQDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQ  85

Query  63  IVYETLKDQQ  72
           ++   +++ Q
Sbjct  86  VIDTAVRETQ  95


>sp|Q0CAS8|FAL1_ASPTN ATP-dependent RNA helicase fal1 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=fal1 
PE=3 SV=1
Length=399

 Score = 138 bits (348),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 104/340 (31%), Positives = 160/340 (47%), Gaps = 60/340 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+RELA Q  + I     Y++   ++    IGG    + +  L+ G  +V GTP
Sbjct  95   QALVLSPTRELATQIQSVIMALGDYMN---VQCHACIGGTNIGEDIRKLDYGQHVVSGTP  151

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++ LVLDEAD LL++G+ + I  ++  +P  T      QV+V S
Sbjct  152  GRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPAT------QVVVVS  205

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL  +DV  ++ K M  P  V +K ++   + +    + V                   
Sbjct  206  ATL-PYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEK-----------------  247

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W      L   Y    I      QA+IFC T+   D L     
Sbjct  248  ---------------EEWK--FDTLCDLYDTLTIT-----QAVIFCNTRRKVDWL-----  280

Query  528  QQGGGPDK-KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                  DK +   F+   +HG+    ER   ++ F++G+ R LI TDV ARGID+  V  
Sbjct  281  -----TDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSL  335

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
            VIN  LP  ++NY+HRIGR GR  R G+AI+ V ++  ++
Sbjct  336  VINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRI  375


 Score = 41.6 bits (96),  Expect = 0.023, Method: Compositional matrix adjust.
 Identities = 17/70 (24%), Positives = 39/70 (56%), Gaps = 0/70 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +M +   + + +    +  P+ +Q+ +I  I  G D +  A++G+GKT  F+I ++Q
Sbjct  26  TFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFAISILQ  85

Query  63  IVYETLKDQQ  72
           ++   +++ Q
Sbjct  86  VIDTVVRESQ  95


>sp|A1C595|FAL1_ASPCL ATP-dependent RNA helicase fal1 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=fal1 PE=3 SV=1
Length=399

 Score = 138 bits (348),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 104/340 (31%), Positives = 160/340 (47%), Gaps = 60/340 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+RELA Q  + I     Y++   ++    IGG    + +  L+ G  +V GTP
Sbjct  95   QALVLSPTRELATQIQSVIMALGDYMN---VQCHACIGGTNIGEDIRKLDYGQHVVSGTP  151

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++ LVLDEAD LL++G+ + I  ++  +P  T      QV+V S
Sbjct  152  GRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPAT------QVVVVS  205

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL  +DV  ++ K M  P  V +K ++   + +    + V                   
Sbjct  206  ATL-PYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEK-----------------  247

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W      L   Y    I      QA+IFC T+   D L     
Sbjct  248  ---------------EEWK--FDTLCDLYDTLTIT-----QAVIFCNTRRKVDWL-----  280

Query  528  QQGGGPDK-KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                  DK +   F+   +HG+    ER   ++ F++G+ R LI TDV ARGID+  V  
Sbjct  281  -----TDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSL  335

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
            VIN  LP  ++NY+HRIGR GR  R G+AI+ V ++  ++
Sbjct  336  VINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRI  375


 Score = 42.4 bits (98),  Expect = 0.012, Method: Compositional matrix adjust.
 Identities = 18/70 (26%), Positives = 39/70 (56%), Gaps = 0/70 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +M +   + + +    +  P+ +Q+ +I  I  G D +  A++G+GKT  FSI ++Q
Sbjct  26  TFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ  85

Query  63  IVYETLKDQQ  72
           ++   +++ Q
Sbjct  86  VIDTAVRETQ  95


>sp|A5AAE5|FAL1_ASPNC ATP-dependent RNA helicase fal1 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=fal1 PE=3 SV=2
Length=399

 Score = 138 bits (348),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 104/340 (31%), Positives = 160/340 (47%), Gaps = 60/340 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+RELA Q  + I     Y++   ++    IGG    + +  L+ G  +V GTP
Sbjct  95   QALVLSPTRELATQIQSVIMALGDYMN---VQCHACIGGTNIGEDIRKLDYGQHVVSGTP  151

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++ LVLDEAD LL++G+ + I  ++  +P  T      QV+V S
Sbjct  152  GRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPAT------QVVVVS  205

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL  +DV  ++ K M  P  V +K ++   + +    + V                   
Sbjct  206  ATL-PYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEK-----------------  247

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W      L   Y    I      QA+IFC T+   D L     
Sbjct  248  ---------------EEWK--FDTLCDLYDTLTIT-----QAVIFCNTRRKVDWL-----  280

Query  528  QQGGGPDK-KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                  DK +   F+   +HG+    ER   ++ F++G+ R LI TDV ARGID+  V  
Sbjct  281  -----TDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSL  335

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
            VIN  LP  ++NY+HRIGR GR  R G+AI+ V ++  ++
Sbjct  336  VINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRI  375


 Score = 42.7 bits (99),  Expect = 0.010, Method: Compositional matrix adjust.
 Identities = 18/70 (26%), Positives = 39/70 (56%), Gaps = 0/70 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +M +   + + +    +  P+ +Q+ +I  I  G D +  A++G+GKT  FSI ++Q
Sbjct  26  TFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ  85

Query  63  IVYETLKDQQ  72
           ++   +++ Q
Sbjct  86  VIDTVVRESQ  95


>sp|P96614|CSHA_BACSU DEAD-box ATP-dependent RNA helicase CshA 
OS=Bacillus subtilis (strain 168) OX=224308 GN=cshA PE=1 SV=2
Length=494

 Score = 140 bits (353),  Expect = 4e-34, Method: Compositional matrix adjust.
 Identities = 114/396 (29%), Positives = 185/396 (47%), Gaps = 70/396 (18%)

Query  281  KFLPNAP--KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            K  P +P  +A+++ P+RELA Q     ++  K   + + + L I GG     Q+  L+ 
Sbjct  64   KINPESPNIQAIVIAPTRELAIQVS---EELYKIGQDKRAKVLPIYGGQDIGRQIRALKK  120

Query  339  GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
              +I+VGTPGRL D ++   + L+ V  +V+DEAD +L+ G+ D I  + + +P      
Sbjct  121  NPNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPS-----  175

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN--PKTDRLW  456
               Q ++ SAT+ +  +K+++E+ M  P  V +K ++     +    + V    K D L 
Sbjct  176  -EHQTLLFSATMPA-PIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLT  233

Query  457  ERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTK  516
              L        D+           SPE+                        AI+F RTK
Sbjct  234  RLL--------DIQ----------SPEL------------------------AIVFGRTK  251

Query  517  IDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAA  576
               D L +    +G         ++   +HGD    +R   L +FK+G +  L+ TDVAA
Sbjct  252  RRVDELAEALNLRG---------YAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAA  302

Query  577  RGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGK  636
            RG+DI GV +V N  +P + ++YVHRIGR GRA + G+A++ + T +EK          K
Sbjct  303  RGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFI-TPREKSMLRAIEQTTK  361

Query  637  GCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQ  672
               + R+KE         + Q+     E L  TIS+
Sbjct  362  RKMD-RMKEPTLDEALEGQQQVTV---ERLRTTISE  393


 Score = 50.8 bits (120),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 23/59 (39%), Positives = 38/59 (64%), Gaps = 0/59 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           F +  +  ++ +A+  M +   T IQA++IPL L   DV+  A+TG+GKT AF IP+++
Sbjct  5   FQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVE  63


>sp|A7TKR8|DED1_VANPO ATP-dependent RNA helicase DED1 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=DED1 PE=3 SV=1
Length=650

 Score = 142 bits (358),  Expect = 4e-34, Method: Compositional matrix adjust.
 Identities = 103/334 (31%), Positives = 158/334 (47%), Gaps = 59/334 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P AL++ P+RELA Q  +   + KK+     +R  ++ GG     Q+  L  G D++V T
Sbjct  244  PTALVLAPTRELATQIYD---EAKKFTYRSWVRPTVVYGGSDIGSQIRDLSRGCDLLVAT  300

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHN--QIPQVTSDGKRLQVI  404
            PGRL DL+  G+++L+ V++LVLDEAD +L  G+   I ++ +   +P V   G+R Q +
Sbjct  301  PGRLSDLLERGRVSLANVKYLVLDEADRMLDMGFEPQIRQIVDGCDMPPV---GER-QTL  356

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT               FP  +     D + D +   V  V   ++ + +R+    +
Sbjct  357  MFSAT---------------FPDDIQHLARDFLSDYIFLSVGKVGSTSENITQRI----L  397

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
              +D+  K             S  + +L                 +IF  TK   D L  
Sbjct  398  YVEDMDKK-------------STLLDLLSAS---------NDGLTLIFVETKRMADELTD  435

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
            + I Q          F    +HGDR   ER++ L  FK G+   L+ T VAARG+DI  V
Sbjct  436  FLIMQ---------DFRATAIHGDRTQSERERALAAFKNGNANLLVATAVAARGLDIPNV  486

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
             +V+N  LP +  +YVHRIGR GRA   G+A + 
Sbjct  487  THVVNYDLPSDIDDYVHRIGRTGRAGNTGVATAF  520


 Score = 43.5 bits (101),  Expect = 0.008, Method: Compositional matrix adjust.
 Identities = 18/37 (49%), Positives = 26/37 (70%), Gaps = 0/37 (0%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            PT +Q  S+P++  G D++  A+TGSGKTG F  PV+
Sbjct  183  PTPVQKYSVPIVSRGRDLMACAQTGSGKTGGFLFPVL  219


>sp|A4RHF1|DED1_PYRO7 ATP-dependent RNA helicase DED1 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=DED1 PE=3 SV=2
Length=671

 Score = 142 bits (359),  Expect = 4e-34, Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 153/334 (46%), Gaps = 58/334 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P +LI+ P+REL  Q  +   + +K+     +R  ++ GG     QL  +E G D++V T
Sbjct  275  PTSLILAPTRELVSQIYD---ESRKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVAT  331

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM--HNQIPQVTSDGKRLQVI  404
            PGRL DL+  G+++L  +++LVLDEAD +L  G+   I R+     +P V    +  Q +
Sbjct  332  PGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPNV----QDRQTL  387

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT               FP ++     D + D +   V  V   ++ + +R+ +   
Sbjct  388  MFSAT---------------FPGYIQQLARDFLKDYIFLSVGRVGSTSENITQRVMEVKH  432

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
            R D +                          + +  +  H     +IF  TK + D L  
Sbjct  433  RDDKI-------------------------SHLLDLLSTHGGGLTLIFVETKRNADELSD  467

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
            +   Q               +HGDR   ER++ LE F+ G    L+ T VAARG+DI  V
Sbjct  468  FLQNQ---------NLPATSIHGDRTQRERERALEMFRTGRCPILVATAVAARGLDIPNV  518

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
             +VIN  LP +  +YVHRIGR GRA   G+A + 
Sbjct  519  THVINYDLPTDIDDYVHRIGRTGRAGNTGIATAF  552


 Score = 52.0 bits (123),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 22/65 (34%), Positives = 39/65 (60%), Gaps = 0/65 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             FS   +   +   +E   + +PT +Q  S+P+++GG D++  A+TGSGKTG F  P++ 
Sbjct  188  TFSNPPLDDHLISNIELARYKVPTPVQKYSVPIVMGGRDLMACAQTGSGKTGGFLFPILS  247

Query  63   IVYET  67
              ++T
Sbjct  248  QAFKT  252


>sp|Q1DJF0|DED1_COCIM ATP-dependent RNA helicase DED1 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DED1 PE=3 SV=2
Length=665

 Score = 142 bits (358),  Expect = 4e-34, Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 155/334 (46%), Gaps = 59/334 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQF--KKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            P +LI+ P+REL  Q  +  ++F  + ++     R  ++ GG     QL  +E G D++V
Sbjct  269  PTSLILAPTRELVSQIYDEARKFAYRSWV-----RPCVVYGGADIGSQLRQIERGCDLLV  323

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL DL+  G+++L  +++LVLDEAD +L  G+   I R+         +G+  Q +
Sbjct  324  ATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPPVNGR--QTL  381

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT               FP  + +   D + D V   V  V   ++ + +++   ++
Sbjct  382  MFSAT---------------FPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKV--EYV  424

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
               D                        K    +  +  H     +IF  TK   D+L +
Sbjct  425  EDAD------------------------KRSVLLDILHTHGTGLTLIFVETKRMADSLSE  460

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
            + I Q          F    +HGDR   ER++ LE F+ G    L+ T VAARG+DI  V
Sbjct  461  FLINQ---------NFPATAIHGDRTQRERERALEYFRNGRCPILVATAVAARGLDIPNV  511

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
             +V+N  LP +  +YVHRIGR GRA   GL+ + 
Sbjct  512  THVVNYDLPTDIDDYVHRIGRTGRAGNTGLSTAF  545


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 0/42 (0%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYE  66
            PT +Q  SIP+++GG D++  A+TGSGKTG F  P++   ++
Sbjct  204  PTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFK  245


>sp|Q5L3G9|CSHA_GEOKA DEAD-box ATP-dependent RNA helicase CshA 
OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=cshA 
PE=3 SV=1
Length=467

 Score = 139 bits (351),  Expect = 4e-34, Method: Compositional matrix adjust.
 Identities = 100/347 (29%), Positives = 168/347 (48%), Gaps = 61/347 (18%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            +A +AL+V P+RELA Q    + +        ++R L I GG     Q+  L+    ++V
Sbjct  69   SAVQALVVAPTRELAIQVSEELYKIGAV---KRVRVLPIYGGQDIERQIRALKKHPHVIV  125

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GTPGR+ D ++ G L L  V  +VLDEAD +L+ G+ + I  + + +P         Q +
Sbjct  126  GTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVP------AERQTL  179

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGED-SVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            + SAT+    +++++E+ M+ P  V +K ++ +VP+   + +                  
Sbjct  180  LFSATMPD-PIRRIAERFMNEPELVKVKAKEMTVPNIQQYYL------------------  220

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                +VH K                    K +   R +     + AI+F RTK   D L 
Sbjct  221  ----EVHEKK-------------------KFDILTRLLDIQAPELAIVFGRTKRRVDELA  257

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
            +    +G         ++   +HGD    +R   L +FK+G +  L+ TDVAARG+DI G
Sbjct  258  EALNLRG---------YAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATDVAARGLDISG  308

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
            V +V N  +P + ++YVHRIGR GRA + G+A++ V   +    +H+
Sbjct  309  VTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHI  355


 Score = 61.6 bits (148),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 0/64 (0%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           M  F E+G+  E+ +A+E M +   T IQA++IPL L   DV+  A+TG+GKT AF IP+
Sbjct  1   MTTFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPI  60

Query  61  IQIV  64
           ++ V
Sbjct  61  VEKV  64


>sp|Q62167|DDX3X_MOUSE ATP-dependent RNA helicase DDX3X OS=Mus 
musculus OX=10090 GN=Ddx3x PE=1 SV=3
Length=662

 Score = 142 bits (358),  Expect = 5e-34, Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 155/333 (47%), Gaps = 56/333 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P +L++ P+RELA Q     ++F       ++R  ++ GG     Q+  LE G  ++V T
Sbjct  267  PISLVLAPTRELAVQIYEEARKFSY---RSRVRPCVVYGGAEIGQQIRDLERGCHLLVAT  323

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL D++  GK+ L   ++LVLDEAD +L  G+   I R+  Q   +   G R   ++ 
Sbjct  324  PGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-DTMPPKGVR-HTMMF  381

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT               FP  + +   D + + +   V  V   ++ + +++       
Sbjct  382  SAT---------------FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKV-------  419

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ-AIIFCRTKIDCDNLEQY  525
                             +W E I   K  + +  +     D   ++F  TK   D+LE +
Sbjct  420  -----------------VWVEEID--KRSFLLDLLNATGKDSLTLVFVETKKGADSLEDF  460

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
               +G         ++C  +HGDR   +R++ L +F+ G    L+ T VAARG+DI  V 
Sbjct  461  LYHEG---------YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVK  511

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            +VIN  LP + + YVHRIGR GR   +GLA S 
Sbjct  512  HVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF  544


 Score = 47.4 bits (111),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 6/84 (7%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +FS++ +   I   +E   +  PT +Q  +IP+I    D++  A+TGSGKT AF +P+
Sbjct  179  IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI  238

Query  61   IQIVY-----ETLKDQQE-GKKGK  78
            +  +Y     E L+  +E G+ G+
Sbjct  239  LSQIYADGPGEALRAMKENGRYGR  262


>sp|Q88NB7|RHLB_PSEPK ATP-dependent RNA helicase RhlB OS=Pseudomonas 
putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 
11950 / KT2440) OX=160488 GN=rhlB PE=3 SV=1
Length=398

 Score = 138 bits (347),  Expect = 5e-34, Method: Compositional matrix adjust.
 Identities = 103/333 (31%), Positives = 158/333 (47%), Gaps = 58/333 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVG  345
            P+ALI+ P+REL  Q   +     KY     L  +  +GG+    QL  LE    DI+V 
Sbjct  85   PRALIIAPTRELVVQIAKDAAALTKYTG---LNVMSFVGGMDFDKQLKALEARHCDILVA  141

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGRL D    G+++L  V  +VLDEAD +L  G   FI ++   I Q     +R Q ++
Sbjct  142  TPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMG---FIPQVRQIIRQTPPKSER-QTLL  197

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT  + DV  L+++    P  V+++ E+   +TV   V  V                 
Sbjct  198  FSATF-TDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAV-----------------  239

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                                S+  K+L        + ++K ++ ++F   K +   +E+ 
Sbjct  240  ------------------AGSDKYKLLYN-----LVTQNKWERVMVFANRKDEVRRIEEK  276

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
             ++ G          +   L GD   H+R + LE F++G +  L+ TDVA RGI I G+ 
Sbjct  277  LVRDG---------INAAQLSGDVPQHKRIRTLESFREGRITVLVATDVAGRGIHIDGIS  327

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            +VIN TLP++  +YVHRIGR GRA   G++IS 
Sbjct  328  HVINFTLPEDPDDYVHRIGRTGRAGTSGVSISF  360


 Score = 38.9 bits (89),  Expect = 0.15, Method: Compositional matrix adjust.
 Identities = 21/64 (33%), Positives = 36/64 (56%), Gaps = 0/64 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F +  +  E+  A+ ++ +   T IQA+ +   L G D +  A+TG+GKT AF I +I  
Sbjct  11  FHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQ  70

Query  64  VYET  67
           + +T
Sbjct  71  LQQT  74


>sp|Q9CAI7|IF4A3_ARATH Eukaryotic initiation factor 4A-3 OS=Arabidopsis 
thaliana OX=3702 GN=TIF4A-3 PE=1 SV=1
Length=414

 Score = 138 bits (347),  Expect = 6e-34, Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 163/344 (47%), Gaps = 60/344 (17%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+RELA+Q    ++    Y+    ++    +GG + R+   VL++GV +VVGTP
Sbjct  111  QALVLAPTRELAQQIEKVMRALGDYL---GVKAQACVGGTSVREDQRVLQSGVHVVVGTP  167

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ DL+    L    ++  VLDEAD +LS+G+ D I  +   +P       ++QV V S
Sbjct  168  GRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLP------SKVQVGVFS  221

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+   +  +++ K M+ P  + +K ++   + +    V V+                  
Sbjct  222  ATMPP-EALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVD------------------  262

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W   ++ L   Y   AI      Q++IF  T+   D L     
Sbjct  263  --------------KEEWK--LETLCDLYETLAIT-----QSVIFVNTRRKVDWL-----  296

Query  528  QQGGGPDK-KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                  DK +    +    HGD   + R   +  F+ G  R LI TD+ ARGID+  V  
Sbjct  297  -----TDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL  351

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
            VIN  LP + +NY+HRIGR GR  R G+AI+ + +E E++   +
Sbjct  352  VINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMMADI  395


 Score = 34.7 bits (78),  Expect = 3.3, Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 31/60 (52%), Gaps = 0/60 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F  M + P++ + +    +  P+ IQ   I     G DV+  A++G+GKT  F   V+Q
Sbjct  42   SFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQ  101


>sp|B7VME9|RHLB_VIBA3 ATP-dependent RNA helicase RhlB OS=Vibrio 
atlanticus (strain LGP32) OX=575788 GN=rhlB PE=3 SV=1
Length=436

 Score = 139 bits (349),  Expect = 6e-34, Method: Compositional matrix adjust.
 Identities = 113/337 (34%), Positives = 164/337 (49%), Gaps = 59/337 (18%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            PN P+A+I+ P+RELA Q  N+       + +  ++  L  GG +   QL  +E G DI+
Sbjct  82   PNQPRAIIMAPTRELAIQIYNDADSL---VASTGIKAALAYGGESYDKQLGKIEEGADIL  138

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            +GT GR+ D       NL+ ++ +VLDEAD +   G+   I  +  ++P+      RL +
Sbjct  139  IGTTGRIIDFYKQKVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKD---RLNM  195

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKT-DRLWERLGKS  462
            +  SATL S+ V++L+ + MH P                HVVV    KT  R+ E L   
Sbjct  196  LF-SATL-SYRVQELAFEHMHNP---------------EHVVVEPERKTGHRIQEELFYP  238

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
                              S E     ++ L        I+E   D+AIIF  TK  C+++
Sbjct  239  ------------------SNEHKMALLQTL--------IEEEWPDRAIIFANTKHKCESV  272

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
                    G     GH+     L GD    +R++ LE+F KGDV  L+ TDVAARG+ I 
Sbjct  273  -------WGHLAADGHRVGL--LTGDVPQKKREKILEQFTKGDVDLLVATDVAARGLHIP  323

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
             V +V N  LPD+ ++YVHRIGR GRA   G +IS  
Sbjct  324  QVTHVFNFDLPDDCEDYVHRIGRTGRAGESGHSISFA  360


 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 23/73 (32%), Positives = 45/73 (62%), Gaps = 2/73 (3%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F+++ ++P++ + +E+  +   T IQA ++P++L G D+   A+TG+GKT AF       
Sbjct  11  FADLDLLPQVIEGLEKKGFDYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH  70

Query  64  VYETLKDQQEGKK  76
           + +T   + EG+K
Sbjct  71  LLKT--PEHEGRK  81


>sp|B5XYY9|RHLB_KLEP3 ATP-dependent RNA helicase RhlB OS=Klebsiella 
pneumoniae (strain 342) OX=507522 GN=rhlB PE=3 SV=1
Length=421

 Score = 138 bits (347),  Expect = 6e-34, Method: Compositional matrix adjust.
 Identities = 109/339 (32%), Positives = 164/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAQATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P  T   +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAT---QRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +V+++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 ++E   D+AIIF  TK  C+++ 
Sbjct  251  -------------------------------------LEEEWPDRAIIFANTKHRCEDI-  272

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
                   G     GH+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  273  ------WGHLAADGHRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGNSISLACEE  363


 Score = 43.5 bits (101),  Expect = 0.006, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P + +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPAVIEALEKKGFHNCTPIQALALPLTLEGRDVAGQAQTGTGKTMAF  63


>sp|B1KQF6|RHLB_SHEWM ATP-dependent RNA helicase RhlB OS=Shewanella 
woodyi (strain ATCC 51908 / MS32) OX=392500 GN=rhlB PE=3 
SV=1
Length=441

 Score = 139 bits (349),  Expect = 6e-34, Method: Compositional matrix adjust.
 Identities = 108/338 (32%), Positives = 168/338 (50%), Gaps = 57/338 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+A+I+ P+RELA Q   +     K+     L+  ++ GG +   Q  VL+ GVDI++
Sbjct  83   NQPRAMIMAPTRELAIQIAKDATLLAKHTG---LKVGIVYGGESYDVQRKVLDKGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GR+ D V  G +NLS ++ +VLDEAD +   G+   I  +  ++P    D K    +
Sbjct  140  GTTGRIIDYVRQGIINLSAIQAVVLDEADRMFDLGFIKDIRFLFRRMP----DAKSRLNM  195

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SATL S  V++L+   M+ P                 VV+  N KT +          
Sbjct  196  LFSATL-SMKVQELAYDHMNEP---------------EKVVIAPNEKTSK----------  229

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                     N +     P M  E +++L     +  I+E   ++AI+F  TK  C+N+  
Sbjct  230  ---------NIKEEIFYPSM-DEKMRLL-----LSLIEEDWPEKAIVFSNTKHSCENVWS  274

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
            +        +  GH+     L GD    +R + LE+F +G +  L+ TDVAARG+ I  V
Sbjct  275  WL-------EGDGHRVGL--LTGDVPQKKRIRILEQFTEGKLDILVATDVAARGLHISDV  325

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             +V N  LPD+ ++YVHRIGR GRA + G+++S    E
Sbjct  326  SHVYNYDLPDDCEDYVHRIGRTGRAGKKGVSVSFACEE  363


 Score = 40.4 bits (93),  Expect = 0.057, Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 0/55 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSI  58
           F++  +  EI  A+ E  +   T IQA S+P++L   D+   A+TG+GKT AF +
Sbjct  11  FADFSLNKEIKTALNESGFEFCTPIQALSLPILLQKKDIAGQAQTGTGKTLAFLV  65


>sp|A5DZE6|DED1_LODEL ATP-dependent RNA helicase DED1 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DED1 PE=3 SV=1
Length=664

 Score = 142 bits (357),  Expect = 7e-34, Method: Compositional matrix adjust.
 Identities = 99/342 (29%), Positives = 161/342 (47%), Gaps = 59/342 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P  L++ P+REL  Q  +   + KK+     +R  ++ GG    +Q+  L+ G D++V T
Sbjct  259  PTILVMAPTRELVSQIYD---ESKKFAYRSWVRPCVVYGGADIGNQIRQLDRGCDLLVAT  315

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ--IPQVTSDGKRLQVI  404
            PGRL DL+  G+++L+ +++LVLDEAD +L  G+   I  +  +  +P V    +  Q +
Sbjct  316  PGRLKDLLERGRVSLANIKYLVLDEADRMLDMGFEPQIRHIVQECDMPDV----QDRQTL  371

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT               FP  + +   D + D +   V  V   ++ + +++     
Sbjct  372  MFSAT---------------FPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKV-----  411

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                ++ +D         E  S  + +L           +     I+F  TK   DNL  
Sbjct  412  ----LYVEDE--------EKKSVILDLLNA---------NSEGLTIVFTETKRMADNLAD  450

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
            +   QG         F    +HGDR  +ER++ L  FK G    L+ T VAARG+DI  V
Sbjct  451  FLYDQG---------FPATAIHGDRSQYEREKALAAFKSGQAPILVATAVAARGLDIPNV  501

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
             +VIN  LP +  +YVHRIGR GRA  +G+A +      + +
Sbjct  502  SHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNKNI  543


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 27/41 (66%), Gaps = 0/41 (0%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVY  65
            PT +Q  S+P++  G D++  A+TGSGKTG F  PV+   Y
Sbjct  198  PTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESY  238


>sp|A7EJY3|DED1_SCLS1 ATP-dependent RNA helicase ded1 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=ded1 PE=3 SV=1
Length=678

 Score = 142 bits (357),  Expect = 7e-34, Method: Compositional matrix adjust.
 Identities = 99/334 (30%), Positives = 155/334 (46%), Gaps = 59/334 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P +LI+ P+REL  Q  +   + +K+     +R  ++ GG     QL  +E G D++V T
Sbjct  272  PTSLILAPTRELVSQIFD---ESRKFAYRSWVRPCVVYGGADIGSQLRQMERGCDLLVAT  328

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM--HNQIPQVTSDGKRLQVI  404
            PGRL DL+  G+++L  +++LVLDEAD +L  G+   I R+     +P V    +  Q +
Sbjct  329  PGRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPGV----QNRQTL  384

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT               FP  + +   D + D V   V  V   ++ + +++     
Sbjct  385  MFSAT---------------FPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKV-----  424

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                 + +D                 I K    +  +  H     +IF  TK   D+L  
Sbjct  425  ----EYVED-----------------IDKRSVLLDILHTHGAGLTLIFVETKRMADSLSD  463

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
            + I Q          F    +HGDR   ER++ LE F+ G    L+ T VAARG+DI  V
Sbjct  464  FLINQ---------NFPATSIHGDRTQRERERALEMFRNGRCPILVATAVAARGLDIPNV  514

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
             +V+N  LP +  +YVHRIGR GRA   G++ + 
Sbjct  515  THVVNYDLPTDIDDYVHRIGRTGRAGNTGISTAF  548


 Score = 52.4 bits (124),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 37/55 (67%), Gaps = 0/55 (0%)

Query  13   IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYET  67
            + + +E   + +PT +Q  SIP+++GG D++  A+TGSGKTG F  P++   ++T
Sbjct  197  LIKNIELAHYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFQT  251


>sp|A6R3L3|DED1_AJECN ATP-dependent RNA helicase DED1 OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=DED1 PE=3 
SV=1
Length=694

 Score = 142 bits (357),  Expect = 7e-34, Method: Compositional matrix adjust.
 Identities = 98/339 (29%), Positives = 159/339 (47%), Gaps = 58/339 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P ALI+ P+REL  Q  +   + +K+     L   ++ GG    +QL  L+ G +++V T
Sbjct  287  PTALILGPTRELVSQIYD---EARKFCYRTALHPRVVYGGAEMGNQLRQLDQGCNVLVAT  343

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM--HNQIPQVTSDGKRLQVI  404
            PGRL D++  G+++L+ +++LVLDEAD +L  G+   I R+   + +P    D    Q +
Sbjct  344  PGRLVDMMERGRISLAHIQYLVLDEADRMLDMGFEPQIRRIVQGSDMP----DKHMRQTL  399

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT    D++KL+E+ +    ++ +    S  + +   +V      D+    L     
Sbjct  400  MFSATFPP-DIQKLAEEFLKDHIFLSVGRVGSTSENITQRIVECESDKDKDSALL-----  453

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
               D+   D+T                                  ++F  TK   D L  
Sbjct  454  ---DILCSDST-------------------------------GLTLVFVETKRQADMLSD  479

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
            + +          H+     +HGDR   ER++ LE F+ G    L+ T VAARG+DI  V
Sbjct  480  FLLD---------HRLPATAIHGDRTQRERERALELFRTGRCPILVATAVAARGLDIPNV  530

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
             +VIN  LP+E  +YVHRIGR GRA   G++ +  +  K
Sbjct  531  THVINYDLPNEIDDYVHRIGRTGRAGNTGISTAFFSRSK  569


 Score = 52.8 bits (125),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 42/77 (55%), Gaps = 0/77 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + AF+   +   +   +    + +PT +Q  SIP+++GG D++  A+TGSGKTG F  P+
Sbjct  202  ITAFTNPPLHEHLLSNIVLARYTVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPI  261

Query  61   IQIVYETLKDQQEGKKG  77
            +     T   + E  +G
Sbjct  262  LSQSLHTRGPEAEAARG  278


>sp|A7MXT4|RHLB_VIBC1 ATP-dependent RNA helicase RhlB OS=Vibrio 
campbellii (strain ATCC BAA-1116) OX=2902295 GN=rhlB PE=3 
SV=1
Length=437

 Score = 138 bits (348),  Expect = 7e-34, Method: Compositional matrix adjust.
 Identities = 112/337 (33%), Positives = 167/337 (50%), Gaps = 59/337 (18%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P  P+A+I+ P+RELA Q  N+       I +  L+  L  GG +   QL+ L++GVDI+
Sbjct  82   PTQPRAIIMAPTRELAIQIFNDAAPL---IASTGLKAALAYGGESYDKQLAKLQDGVDIL  138

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            +GT GR+ D       NL+ ++ +VLDEAD +   G+   I  +  ++P+     +RL +
Sbjct  139  IGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPE---PKERLNM  195

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKT-DRLWERLGKS  462
            +  SATL S+ V++L+ + MH P                HVVV    KT  R+ E L   
Sbjct  196  LF-SATL-SYRVQELAFEHMHNP---------------EHVVVEPEQKTGHRIQEEL--F  236

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
            +   +D  A   T                         I+E   D+AI+F  TK  C+++
Sbjct  237  YPSNEDKMALLQT------------------------LIEEEWPDRAIVFANTKHKCESI  272

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
                    G     GH+     L GD    +R++ LE+F +G+V  L+ TDVAARG+ I 
Sbjct  273  -------WGHLAADGHRVGL--LTGDVPQKKREKILEQFTRGEVDLLVATDVAARGLHIP  323

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
             V +V N  LPD+ ++YVHRIGR GRA   G +IS  
Sbjct  324  QVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFA  360


 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 24/73 (33%), Positives = 44/73 (60%), Gaps = 2/73 (3%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F+++G+ P++ + +E+  +   T IQA ++P++L G D+   A+TG+GKT AF       
Sbjct  11  FADLGLKPQVTEGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH  70

Query  64  VYETLKDQQEGKK  76
           +  T   + EG+K
Sbjct  71  LLTT--PEHEGRK  81


>sp|A4WG30|RHLB_ENT38 ATP-dependent RNA helicase RhlB OS=Enterobacter 
sp. (strain 638) OX=399742 GN=rhlB PE=3 SV=1
Length=421

 Score = 138 bits (347),  Expect = 7e-34, Method: Compositional matrix adjust.
 Identities = 109/339 (32%), Positives = 163/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAQ---TTGLKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPTP---QRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +V+++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+++ 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEDIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + LE F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILEDFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 42.7 bits (99),  Expect = 0.011, Method: Compositional matrix adjust.
 Identities = 22/53 (42%), Positives = 33/53 (62%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  +  ++ +A+E   +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHAKVIEALENKGFHYCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|C4K8M8|RHLB_HAMD5 ATP-dependent RNA helicase RhlB OS=Hamiltonella 
defensa subsp. Acyrthosiphon pisum (strain 5AT) OX=572265 
GN=rhlB PE=3 SV=1
Length=422

 Score = 138 bits (347),  Expect = 7e-34, Method: Compositional matrix adjust.
 Identities = 113/379 (30%), Positives = 180/379 (47%), Gaps = 69/379 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+ALI+ P+RELA Q   + +   ++     L+  L  GG     QL +LE+GVDI++GT
Sbjct  85   PRALIMVPTRELAIQIYTDAETLSQFT---SLKMGLAYGGDGYDKQLKILESGVDILIGT  141

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGR+ D      ++L+ ++ +VLDEAD +   G+   I  +  ++P      KRL ++  
Sbjct  142  PGRIIDYAKQNFIHLNALQVIVLDEADRMYDLGFIKDIRWLFRRMPPAE---KRLNMLF-  197

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVVVPVNPKTDRLWERLGKSHIR  465
            SATL S+ V++LS + M+ P +++++    +   +   +  P N    RL + L      
Sbjct  198  SATL-SYRVRELSFEQMNHPEYIEVEPLQKIGSQIQEELFYPSNEDKMRLLQTL------  250

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                                               I+E   D+ IIF  TK  C+++  +
Sbjct  251  -----------------------------------IEEEWPDRCIIFANTKQRCEDIWGH  275

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
             +         GH+     L GD    +R Q L+ F KG +  L+ TDVAARG+ I  V 
Sbjct  276  LV-------ADGHRVG--LLTGDVAQRKRIQILDDFSKGYLDILVATDVAARGLHIPKVT  326

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            +V N  LP+  ++Y+HRIGR GRA   G +ISL     E    H+  S  + C   R+  
Sbjct  327  HVFNYDLPENVEDYIHRIGRTGRAGEKGYSISLAC---EAFASHL--STIEACTGHRIP-  380

Query  646  DGGCTIWYNEMQLLSEIEE  664
                T  YN+  LL+++ +
Sbjct  381  ----TSEYNKEALLTDLPQ  395


 Score = 47.4 bits (111),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 25/68 (37%), Positives = 36/68 (53%), Gaps = 0/68 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           FS+  + P + +A+E   +   T IQA S P+ L G DV   A+TG+GKT AF   V   
Sbjct  11  FSDFALHPLVIKAIENQGFYHCTPIQALSFPITLAGRDVAAQAQTGTGKTLAFLASVFNY  70

Query  64  VYETLKDQ  71
           +     D+
Sbjct  71  LLTNAADE  78


>sp|Q9NXZ2|DDX43_HUMAN Probable ATP-dependent RNA helicase DDX43 
OS=Homo sapiens OX=9606 GN=DDX43 PE=1 SV=2
Length=648

 Score = 141 bits (356),  Expect = 8e-34, Method: Compositional matrix adjust.
 Identities = 105/353 (30%), Positives = 160/353 (45%), Gaps = 80/353 (23%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P  L++ P+RELA Q      ++        LR + + GG    +Q+  L+ GVDI++
Sbjct  315  NRPGMLVLTPTRELALQVEGECCKY----SYKGLRSVCVYGGGNRDEQIEELKKGVDIII  370

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL+DL  +  +NL  + +LVLDEAD +L  G+           PQ+      ++++
Sbjct  371  ATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFE----------PQI------MKIL  414

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
                     DV+   + +M   TW         P +VH               RL +S++
Sbjct  415  --------LDVRPDRQTVMTSATW---------PHSVH---------------RLAQSYL  442

Query  465  R--------TDDVHAKDNTRPG---ANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFC  513
            +        T D+ A  + +         E WS     L+   +         D+ I+F 
Sbjct  443  KEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSMSST--------DKVIVFV  494

Query  514  RTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTD  573
              K   D+L    I             S   LHGDR+  +R++ LE FK G VR LI TD
Sbjct  495  SRKAVADHLSSDLIL---------GNISVESLHGDREQRDREKALENFKTGKVRILIATD  545

Query  574  VAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
            +A+RG+D+H V +V N   P   + YVHRIGR GRA R G++I+ +     +V
Sbjct  546  LASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRV  598


 Score = 42.4 bits (98),  Expect = 0.018, Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 43/64 (67%), Gaps = 2/64 (3%)

Query  11   PEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP-VIQIVYE-TL  68
            PE+ + +++  +  PT IQ+++ P++L G D++  A+TG+GKT  + +P  I +V + +L
Sbjct  251  PEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPSL  310

Query  69   KDQQ  72
            K Q+
Sbjct  311  KGQR  314


>sp|Q6CLR3|DED1_KLULA ATP-dependent RNA helicase DED1 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DED1 PE=3 SV=1
Length=627

 Score = 141 bits (355),  Expect = 8e-34, Method: Compositional matrix adjust.
 Identities = 98/346 (28%), Positives = 161/346 (47%), Gaps = 55/346 (16%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P A+I+ P+RELA Q  +   + KK+     ++ +++ GG +  +Q+  +  G +++V T
Sbjct  243  PTAVILAPTRELATQIYD---EAKKFTYRSWVKPMVVYGGASIDNQIKQMRYGCNLLVAT  299

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL DL+    ++L+ V++LVLDEAD +L  G+   I R+       + D +  Q ++ 
Sbjct  300  PGRLTDLLERRYISLANVKYLVLDEADRMLDMGFEPQIRRIVEGSDMPSVDNR--QTLMF  357

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT               FP+ +     D + D V   V  V   ++ + +++       
Sbjct  358  SAT---------------FPSEIQHLASDFLKDYVFLSVGRVGSTSENITQKI-------  395

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
              ++ +D                   K +  +  +        +IF  TK   D+L  + 
Sbjct  396  --LYVED-----------------FDKNDTLLDLLAASNEGLTLIFVETKRAADSLTDFL  436

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
            I +G         F    +HGDR   ER++ L  FK G    L+ T VAARG+DI  V +
Sbjct  437  IMEG---------FKATAIHGDRTQGERERALSAFKTGRATILVATAVAARGLDIPNVTH  487

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
            VIN  LP++  +YVHRIGR GRA   G+A +      + V   + S
Sbjct  488  VINFDLPNDIDDYVHRIGRTGRAGNTGVATTFFNRGNKNVAKELVS  533


 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 0/58 (0%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIK  82
            PT +Q  S+P++  G D++  A+TGSGKTG F  PV+   + +         G + IK
Sbjct  182  PTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESFSSGPASTPEAAGNSYIK  239


>sp|B5BIS9|RHLB_SALPK ATP-dependent RNA helicase RhlB OS=Salmonella 
paratyphi A (strain AKU_12601) OX=554290 GN=rhlB PE=3 
SV=1
Length=421

 Score = 137 bits (346),  Expect = 9e-34, Method: Compositional matrix adjust.
 Identities = 108/339 (32%), Positives = 163/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAQATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRVPPA---AQRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +V+++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+++ 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEDIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 47.0 bits (110),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|Q91372|DDX4_XENLA Probable ATP-dependent RNA helicase DDX4 
OS=Xenopus laevis OX=8355 GN=ddx4 PE=2 SV=1
Length=700

 Score = 141 bits (356),  Expect = 9e-34, Method: Compositional matrix adjust.
 Identities = 105/358 (29%), Positives = 172/358 (48%), Gaps = 63/358 (18%)

Query  274  NAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQ  332
            N  +T +++L    P+A+I+ P+REL  Q   + ++F        +R +++ GG+     
Sbjct  338  NEGITASQYLQLQEPEAIIIAPTRELINQIYLDARKFSY---GTCVRPVVVYGGIQPVHA  394

Query  333  LSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP  392
            +  +E G +I+  TPGRL D+VS  K+ LS++R+LVLDEAD +L  G++  I ++  + P
Sbjct  395  MRDVEKGCNILCATPGRLLDIVSKEKIGLSKLRYLVLDEADRMLDMGFAPEIEKLMTK-P  453

Query  393  QVTSDGKRLQVIVCSATLHSFDVKKLSEKIM---HFPTWVDLKGEDSVPDTVHHVV-VPV  448
             + +  KR Q ++ SAT +  ++++L+   +   H    V L G  +  D    V+ +  
Sbjct  454  GMPTKEKR-QTLMFSAT-YPEEIRRLASNYLKSEHLFVVVGLVG-GACSDVAQTVLEMRE  510

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
            N K ++L E L                                          K  + ++
Sbjct  511  NGKMEKLLEIL------------------------------------------KSSEKER  528

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
             +IF  TK   D +  Y  Q+         +FS   +HGDR+ ++R+  L  F+ G    
Sbjct  529  TMIFVNTKKKADFIAGYLCQE---------KFSSTSIHGDREQYQRESALWDFRTGKCTV  579

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
            ++CT VAARG+DI  V +VIN  +P E   YVHRIGR GR    G A S    + + V
Sbjct  580  IVCTAVAARGLDIENVQHVINYDVPKEVDEYVHRIGRTGRCGNTGKATSFFNVQDDHV  637


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 21/64 (33%), Positives = 37/64 (58%), Gaps = 0/64 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E  +   + + V    ++  T +Q  SIP+I+ G D++  A+TGSGKT AF +P+
Sbjct  273  ILTFEEANLCETLRRNVARAGYVKLTPVQKHSIPIIMAGRDLMACAQTGSGKTAAFLLPI  332

Query  61   IQIV  64
            +  +
Sbjct  333  LSYM  336


>sp|Q40467|IF414_TOBAC Eukaryotic initiation factor 4A-14 OS=Nicotiana 
tabacum OX=4097 PE=2 SV=1
Length=413

 Score = 137 bits (346),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 103/359 (29%), Positives = 168/359 (47%), Gaps = 65/359 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+RELA+Q    ++    Y+    ++    +GG + R+   +L++GV +VVGTP
Sbjct  110  QALVLAPTRELAQQIEKVMRALGDYL---GVKVHACVGGTSVREDQRILQSGVHVVVGTP  166

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++  VLDEAD +LS+G+ D I  +   +P       ++QV V S
Sbjct  167  GRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLP------PKIQVGVFS  220

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+   +  +++ K M  P  + +K +D   + +    V V+                  
Sbjct  221  ATMPP-EALEITRKFMSKPVRILVKRDDVTLEGIKQFYVNVD------------------  261

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W   ++ L   Y   AI      Q++IF  T+   D L     
Sbjct  262  --------------KEEWK--LETLCDLYETLAIT-----QSVIFVNTRRKVDWL-----  295

Query  528  QQGGGPDK-KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                  DK +    +    HGD   + R   +  F+ G  R LI TD+ ARGID+  V  
Sbjct  296  -----TDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL  350

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            VIN  LP + +NY+HRIGR GR  R G+AI+ V  + E++ + +     +  YN  ++E
Sbjct  351  VINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDI-----QKFYNVVIEE  404


 Score = 33.9 bits (76),  Expect = 6.1, Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 0/60 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +F  MG+   + + +    +  P+ IQ   I     G DV+  A++G+GKT  F   V+Q
Sbjct  41  SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQ  100


>sp|C8V8H4|DED1_EMENI ATP-dependent RNA helicase ded1 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=ded1 PE=3 SV=1
Length=668

 Score = 141 bits (355),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 152/340 (45%), Gaps = 70/340 (21%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P +LI+ P+REL  Q  +  ++F        +R  ++ GG     QL  +E G D++V T
Sbjct  272  PTSLILAPTRELVSQIFDEARKFAY---RSWVRPCVVYGGADIGSQLRQIERGCDLLVAT  328

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM--HNQIPQVTSDGKRLQVI  404
            PGRL DL+  G+++L  +++L+LDEAD +L  G+   I R+     +P V       Q +
Sbjct  329  PGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIRRIVEGEDMPNVND----RQTL  384

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL-----  459
            + SAT               FP  + +   D + D V   V  V   ++ + +++     
Sbjct  385  MFSAT---------------FPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVED  429

Query  460  -GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
              K  +  D +H    T                                  +IF  TK  
Sbjct  430  HDKRSVLLDILHTHGTT-------------------------------GLTLIFVETKRM  458

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
             D L ++ I Q         +F    +HGDR   ER++ LE F+ G    L+ T VAARG
Sbjct  459  ADALSEFLINQ---------RFPATAIHGDRTQRERERALEMFRSGRYPILVATAVAARG  509

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            +DI  V +VIN  LP +  +YVHRIGR GRA   G+A + 
Sbjct  510  LDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAF  549


 Score = 48.1 bits (113),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 0/42 (0%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYE  66
            PT +Q  SIP+++ G D++  A+TGSGKTG F  P++   Y+
Sbjct  209  PTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAYQ  250


>sp|Q5VNM3|IF43A_ORYSJ Eukaryotic initiation factor 4A-III homolog 
A OS=Oryza sativa subsp. japonica OX=39947 GN=EIF4A3A PE=1 
SV=1
Length=404

 Score = 137 bits (345),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 103/358 (29%), Positives = 165/358 (46%), Gaps = 63/358 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+RELA QT   +     +I+   ++    IGG +  + +  LE+GV +V GTP
Sbjct  101  QALILSPTRELAAQTERVMLAIGDFIN---IQVHACIGGKSIGEDIRKLEHGVHVVSGTP  157

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++ L+LDEAD +L +G+ D I  ++  +P        LQV + S
Sbjct  158  GRVCDMIKRRTLRTRAIKLLILDEADEMLGRGFKDQIYDVYRYLP------PELQVCLIS  211

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL   ++ +++ K M  P  + +K ++   + +    V V                   
Sbjct  212  ATL-PHEILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEK-----------------  253

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W       K +          + QA+IFC TK   D L +   
Sbjct  254  ---------------EEW-------KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTERM-  290

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
                    + + F+   +HGD    ER   +  F+ G  R LI TDV ARG+D+  V  V
Sbjct  291  --------RSNNFTVSAMHGDMPQKERDAIMGEFRSGATRVLITTDVWARGLDVQQVSLV  342

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            IN  LP+ ++ Y+HRIGR GR  R G+AI+ V  E  ++   +     +  Y+T++ E
Sbjct  343  INYDLPNNRELYIHRIGRSGRFGRKGVAINFVKKEDIRILRDI-----EQYYSTQIDE  395


 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 43/72 (60%), Gaps = 0/72 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +++F +MG+  ++ + +    +  P+ IQ  ++  I+ G DV+  A++G+GKT   S+ V
Sbjct  30   ISSFDQMGIRDDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSV  89

Query  61   IQIVYETLKDQQ  72
             QIV   +++ Q
Sbjct  90   CQIVDTAVREVQ  101


>sp|A9MJ29|RHLB_SALAR ATP-dependent RNA helicase RhlB OS=Salmonella 
arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) OX=41514 
GN=rhlB PE=3 SV=1
Length=421

 Score = 137 bits (346),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 108/339 (32%), Positives = 163/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAQVTG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA---AQRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +V+++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+++ 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEDIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 47.0 bits (110),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|P0A2P0|RHLB_SALTY ATP-dependent RNA helicase RhlB OS=Salmonella 
typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 
GN=rhlB PE=3 SV=2
Length=421

 Score = 137 bits (345),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 108/339 (32%), Positives = 163/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAQATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA---AQRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +V+++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+++ 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEDIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 47.0 bits (110),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|P0A2P1|RHLB_SALTI ATP-dependent RNA helicase RhlB OS=Salmonella 
typhi OX=90370 GN=rhlB PE=3 SV=2
Length=421

 Score = 137 bits (345),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 108/339 (32%), Positives = 163/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAQATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA---AQRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +V+++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+++ 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEDIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 47.0 bits (110),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|B4TNT3|RHLB_SALSV ATP-dependent RNA helicase RhlB OS=Salmonella 
schwarzengrund (strain CVM19633) OX=439843 GN=rhlB PE=3 
SV=1
Length=421

 Score = 137 bits (345),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 108/339 (32%), Positives = 163/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAQATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA---AQRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +V+++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+++ 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEDIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 47.0 bits (110),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|C0Q2V9|RHLB_SALPC ATP-dependent RNA helicase RhlB OS=Salmonella 
paratyphi C (strain RKS4594) OX=476213 GN=rhlB PE=3 SV=1
Length=421

 Score = 137 bits (345),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 108/339 (32%), Positives = 163/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAQATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA---AQRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +V+++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+++ 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEDIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 47.0 bits (110),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|A9MXF3|RHLB_SALPB ATP-dependent RNA helicase RhlB OS=Salmonella 
paratyphi B (strain ATCC BAA-1250 / SPB7) OX=1016998 GN=rhlB 
PE=3 SV=1
Length=421

 Score = 137 bits (345),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 108/339 (32%), Positives = 163/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAQATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA---AQRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +V+++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+++ 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEDIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 47.0 bits (110),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|B4SZ26|RHLB_SALNS ATP-dependent RNA helicase RhlB OS=Salmonella 
newport (strain SL254) OX=423368 GN=rhlB PE=3 SV=1
Length=421

 Score = 137 bits (345),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 108/339 (32%), Positives = 163/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAQATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA---AQRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +V+++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+++ 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEDIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 47.0 bits (110),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|B4TB13|RHLB_SALHS ATP-dependent RNA helicase RhlB OS=Salmonella 
heidelberg (strain SL476) OX=454169 GN=rhlB PE=3 SV=1
Length=421

 Score = 137 bits (345),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 108/339 (32%), Positives = 163/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAQATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA---AQRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +V+++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+++ 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEDIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 47.0 bits (110),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|B5RFS3|RHLB_SALG2 ATP-dependent RNA helicase RhlB OS=Salmonella 
gallinarum (strain 287/91 / NCTC 13346) OX=550538 GN=rhlB 
PE=3 SV=1
Length=421

 Score = 137 bits (345),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 108/339 (32%), Positives = 163/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAQATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA---AQRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +V+++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+++ 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEDIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 47.0 bits (110),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|B5QVH2|RHLB_SALEP ATP-dependent RNA helicase RhlB OS=Salmonella 
enteritidis PT4 (strain P125109) OX=550537 GN=rhlB PE=3 
SV=1
Length=421

 Score = 137 bits (345),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 108/339 (32%), Positives = 163/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAQATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA---AQRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +V+++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+++ 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEDIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 47.0 bits (110),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|Q57HT6|RHLB_SALCH ATP-dependent RNA helicase RhlB OS=Salmonella 
choleraesuis (strain SC-B67) OX=321314 GN=rhlB PE=3 SV=1
Length=421

 Score = 137 bits (345),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 108/339 (32%), Positives = 163/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAQATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA---AQRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +V+++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+++ 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEDIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 47.0 bits (110),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|B5EZ40|RHLB_SALA4 ATP-dependent RNA helicase RhlB OS=Salmonella 
agona (strain SL483) OX=454166 GN=rhlB PE=3 SV=1
Length=421

 Score = 137 bits (345),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 108/339 (32%), Positives = 163/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAQATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA---AQRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +V+++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+++ 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEDIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 47.0 bits (110),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|A6SEH9|DED1_BOTFB ATP-dependent RNA helicase ded1 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=ded1 PE=3 SV=1
Length=683

 Score = 141 bits (355),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 99/334 (30%), Positives = 155/334 (46%), Gaps = 59/334 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P +LI+ P+REL  Q  +   + +K+     +R  ++ GG     QL  +E G D++V T
Sbjct  272  PTSLILAPTRELVSQIYD---ESRKFAYRSWVRPCVVYGGADIGSQLRQMERGCDLLVAT  328

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM--HNQIPQVTSDGKRLQVI  404
            PGRL DL+  G+++L  +++LVLDEAD +L  G+   I R+     +P V    +  Q +
Sbjct  329  PGRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPGV----QNRQTL  384

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT               FP  + +   D + D V   V  V   ++ + +++     
Sbjct  385  MFSAT---------------FPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKV-----  424

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                 + +D                 I K    +  +  H     +IF  TK   D+L  
Sbjct  425  ----EYVED-----------------IDKRSVLLDILHTHGAGLTLIFVETKRMADSLSD  463

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
            + I Q          F    +HGDR   ER++ LE F+ G    L+ T VAARG+DI  V
Sbjct  464  FLINQ---------NFPATSIHGDRTQRERERALEMFRNGRCPILVATAVAARGLDIPNV  514

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
             +V+N  LP +  +YVHRIGR GRA   G++ + 
Sbjct  515  KHVVNYDLPTDIDDYVHRIGRTGRAGNTGISTAF  548


 Score = 52.4 bits (124),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 37/55 (67%), Gaps = 0/55 (0%)

Query  13   IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYET  67
            + + +E   + +PT +Q  SIP+++GG D++  A+TGSGKTG F  P++   ++T
Sbjct  197  LIKNIELAHYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFQT  251


>sp|Q088J2|RHLB_SHEFN ATP-dependent RNA helicase RhlB OS=Shewanella 
frigidimarina (strain NCIMB 400) OX=318167 GN=rhlB PE=3 
SV=1
Length=434

 Score = 137 bits (346),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 105/336 (31%), Positives = 168/336 (50%), Gaps = 57/336 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+A+I+ P+RELA Q   + K    +     L+  ++ GG +   Q +VL+ GVDI++GT
Sbjct  85   PRAIIMAPTRELAIQIAKDAKLLAAHTG---LKVGIVYGGESYETQRAVLDKGVDILIGT  141

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
             GR+ D V  G ++LS ++ +VLDEAD +   G+   I  +  ++P    D K    ++ 
Sbjct  142  TGRIIDYVRQGVISLSHIQAVVLDEADRMFDLGFIKDIRFLFRRMP----DAKSRLNMLF  197

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SATL S  V++L+   M+ P  V+++              P+   +  + E +       
Sbjct  198  SATL-SMKVQELAYDHMNDPEKVEIE--------------PLEKTSKNIKEEIF------  236

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                           P M  + +++L     +  I+E   D+AI+F  TK  C+ L  Y 
Sbjct  237  --------------YPSM-EDKMRLL-----LSLIEEDWPDKAIVFSNTKHSCEKLWSYL  276

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                   +  GH+     L GD    +R + LE+F  G++  L+ TDVAARG+ I  V +
Sbjct  277  -------EGDGHRVGL--LTGDVPQKKRIRILEQFTSGEIDVLVATDVAARGLHISDVSH  327

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V N  LPD+ ++YVHRIGR GRA + G++IS    E
Sbjct  328  VYNYDLPDDCEDYVHRIGRTGRAGQKGISISFACEE  363


 Score = 44.3 bits (103),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (62%), Gaps = 0/55 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSI  58
           F++  + PEI  A+ E  +   T IQA S+P++L   D+   A+TG+GKT AF +
Sbjct  11  FADFPLKPEILAALNENGFEFCTPIQALSLPILLNAKDIAGQAQTGTGKTMAFLV  65


>sp|Q6FS54|DBP3_CANGA ATP-dependent RNA helicase DBP3 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP3 PE=3 SV=1
Length=540

 Score = 139 bits (351),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 107/344 (31%), Positives = 163/344 (47%), Gaps = 57/344 (17%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P   K L++ P+RELA Q  +N+    + +    +   ++ GGV   DQ   +    ++V
Sbjct  197  PKGIKVLVISPTRELASQIYDNLVLLTQKVG---IDCCVVYGGVPKDDQRRQIAKS-NVV  252

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            V TPGRL DL+  G ++LS V ++VLDEAD +L +G+ + I R+  Q     +  K  Q 
Sbjct  253  VATPGRLLDLIEEGSVDLSPVDYMVLDEADRMLEKGFEEDIKRIIGQ-----TKSKDRQT  307

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGED--SVPDTVHHVVVPVNPKTDRLWERLGK  461
            ++ +AT    +V++L+   M  P  V +   D  S    +  +V  V+P++    ER   
Sbjct  308  LMFTATWPK-EVRELASTFMKEPVKVSIGNRDELSANKRITQIVEVVDPRSK---ER---  360

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
               +  D+  K  + P  N                          D+ +IF   K +   
Sbjct  361  ---KLLDLLKKYQSGPKKN--------------------------DKVLIFALYKKEASR  391

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            +E+     G         +    +HGD    +R Q L  FK G    L+ TDVAARG+DI
Sbjct  392  VERNLNYNG---------YKVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDI  442

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
              V  VIN+T P   ++YVHRIGR GRA + G A +L  TE+EK
Sbjct  443  PNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLF-TEQEK  485


 Score = 48.9 bits (115),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 26/61 (43%), Positives = 38/61 (62%), Gaps = 2/61 (3%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + AF+++ +  E+   + +  +  PT IQA S P +L G DV+  AETGSGKT AF +P 
Sbjct  129  LLAFNQISLDKEVQNEIAK--FPKPTPIQAVSWPYLLSGKDVIGVAETGSGKTFAFGVPA  186

Query  61   I  61
            I
Sbjct  187  I  187


>sp|Q62095|DDX3Y_MOUSE ATP-dependent RNA helicase DDX3Y OS=Mus 
musculus OX=10090 GN=Ddx3y PE=1 SV=2
Length=658

 Score = 140 bits (354),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 96/333 (29%), Positives = 156/333 (47%), Gaps = 56/333 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P +L++ P+RELA Q     ++F       ++R  ++ GG     Q+  LE G  ++V T
Sbjct  266  PISLVLAPTRELAVQIYEEARKFSY---RSRVRPCVVYGGADTVQQIRDLERGCHLLVAT  322

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL D++  GK+ L   ++LVLDEAD +L  G+   I R+  Q   +   G R   ++ 
Sbjct  323  PGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-DTMPPKGVR-HTMMF  380

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT               FP  + +   D + + +   V  V   ++ + +++       
Sbjct  381  SAT---------------FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKV-------  418

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ-AIIFCRTKIDCDNLEQY  525
                             +W E +   K  + +  +     D   ++F  TK   D+LE +
Sbjct  419  -----------------VWVEELD--KRSFLLDLLNATGKDSLTLVFVETKKGADSLENF  459

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
              Q+         +++C  +HGDR   +R++ L +F+ G    L+ T VAARG+DI  V 
Sbjct  460  LFQE---------RYACTSIHGDRSQKDREEALHQFRSGRKPILVATAVAARGLDISNVK  510

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            +VIN  LP + + YVHRIGR GR   +GLA S 
Sbjct  511  HVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF  543


 Score = 48.1 bits (113),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 28/81 (35%), Positives = 46/81 (57%), Gaps = 6/81 (7%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS++ +   I   +E   +  PT +Q  +IP+I    D++  A+TGSGKT AF +P++  
Sbjct  181  FSDIEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ  240

Query  64   VY-----ETLKDQQE-GKKGK  78
            +Y     E LK  +E G+ G+
Sbjct  241  IYTDGPGEALKAMKENGRYGR  261


>sp|B1JQ11|RHLB_YERPY ATP-dependent RNA helicase RhlB OS=Yersinia 
pseudotuberculosis serotype O:3 (strain YPIII) OX=502800 
GN=rhlB PE=3 SV=1
Length=428

 Score = 137 bits (345),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 113/342 (33%), Positives = 164/342 (48%), Gaps = 65/342 (19%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q  ++ +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHSDAESLSQVTG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P V    KRL ++
Sbjct  140  GTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSV---DKRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV----VVPVNPKTDRLWERLG  460
              SATL S+ V++L+ + M+   +V++   + +  T H +      P N +  RL + L 
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYVEV---EPLQKTGHRIKEELFYPSNEEKMRLLQTL-  250

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
                                                    I+E   D+ IIF  TK  C+
Sbjct  251  ----------------------------------------IEEEWPDRCIIFANTKHRCE  270

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             +        G     GH+     L GD    +R + LE F KGD+  L+ TDVAARG+ 
Sbjct  271  EI-------WGHLAADGHRVGL--LTGDVAQKKRLRILEDFTKGDLDILVATDVAARGLH  321

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  322  IPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEE  363


 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P + +A+E   +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAF  63


>sp|Q66G19|RHLB_YERPS ATP-dependent RNA helicase RhlB OS=Yersinia 
pseudotuberculosis serotype I (strain IP32953) OX=273123 
GN=rhlB PE=3 SV=1
Length=428

 Score = 137 bits (345),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 113/342 (33%), Positives = 164/342 (48%), Gaps = 65/342 (19%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q  ++ +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHSDAESLSQVTG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P V    KRL ++
Sbjct  140  GTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSV---DKRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV----VVPVNPKTDRLWERLG  460
              SATL S+ V++L+ + M+   +V++   + +  T H +      P N +  RL + L 
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYVEV---EPLQKTGHRIKEELFYPSNEEKMRLLQTL-  250

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
                                                    I+E   D+ IIF  TK  C+
Sbjct  251  ----------------------------------------IEEEWPDRCIIFANTKHRCE  270

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             +        G     GH+     L GD    +R + LE F KGD+  L+ TDVAARG+ 
Sbjct  271  EI-------WGHLAADGHRVGL--LTGDVAQKKRLRILEDFTKGDLDILVATDVAARGLH  321

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  322  IPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEE  363


 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P + +A+E   +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAF  63


>sp|A4TRC8|RHLB_YERPP ATP-dependent RNA helicase RhlB OS=Yersinia 
pestis (strain Pestoides F) OX=386656 GN=rhlB PE=3 SV=1
Length=428

 Score = 137 bits (345),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 113/342 (33%), Positives = 164/342 (48%), Gaps = 65/342 (19%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q  ++ +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHSDAESLSQVTG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P V    KRL ++
Sbjct  140  GTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSV---DKRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV----VVPVNPKTDRLWERLG  460
              SATL S+ V++L+ + M+   +V++   + +  T H +      P N +  RL + L 
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYVEV---EPLQKTGHRIKEELFYPSNEEKMRLLQTL-  250

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
                                                    I+E   D+ IIF  TK  C+
Sbjct  251  ----------------------------------------IEEEWPDRCIIFANTKHRCE  270

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             +        G     GH+     L GD    +R + LE F KGD+  L+ TDVAARG+ 
Sbjct  271  EI-------WGHLAADGHRVGL--LTGDVAQKKRLRILEDFTKGDLDILVATDVAARGLH  321

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  322  IPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEE  363


 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P + +A+E   +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAF  63


>sp|Q1CNK3|RHLB_YERPN ATP-dependent RNA helicase RhlB OS=Yersinia 
pestis bv. Antiqua (strain Nepal516) OX=377628 GN=rhlB PE=3 
SV=1
Length=428

 Score = 137 bits (345),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 113/342 (33%), Positives = 164/342 (48%), Gaps = 65/342 (19%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q  ++ +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHSDAESLSQVTG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P V    KRL ++
Sbjct  140  GTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSV---DKRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV----VVPVNPKTDRLWERLG  460
              SATL S+ V++L+ + M+   +V++   + +  T H +      P N +  RL + L 
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYVEV---EPLQKTGHRIKEELFYPSNEEKMRLLQTL-  250

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
                                                    I+E   D+ IIF  TK  C+
Sbjct  251  ----------------------------------------IEEEWPDRCIIFANTKHRCE  270

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             +        G     GH+     L GD    +R + LE F KGD+  L+ TDVAARG+ 
Sbjct  271  EI-------WGHLAADGHRVGL--LTGDVAQKKRLRILEDFTKGDLDILVATDVAARGLH  321

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  322  IPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEE  363


 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P + +A+E   +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAF  63


>sp|Q8ZAD8|RHLB_YERPE ATP-dependent RNA helicase RhlB OS=Yersinia 
pestis OX=632 GN=rhlB PE=3 SV=1
Length=428

 Score = 137 bits (345),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 113/342 (33%), Positives = 164/342 (48%), Gaps = 65/342 (19%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q  ++ +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHSDAESLSQVTG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P V    KRL ++
Sbjct  140  GTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSV---DKRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV----VVPVNPKTDRLWERLG  460
              SATL S+ V++L+ + M+   +V++   + +  T H +      P N +  RL + L 
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYVEV---EPLQKTGHRIKEELFYPSNEEKMRLLQTL-  250

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
                                                    I+E   D+ IIF  TK  C+
Sbjct  251  ----------------------------------------IEEEWPDRCIIFANTKHRCE  270

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             +        G     GH+     L GD    +R + LE F KGD+  L+ TDVAARG+ 
Sbjct  271  EI-------WGHLAADGHRVGL--LTGDVAQKKRLRILEDFTKGDLDILVATDVAARGLH  321

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  322  IPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEE  363


 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P + +A+E   +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAF  63


>sp|B2K046|RHLB_YERPB ATP-dependent RNA helicase RhlB OS=Yersinia 
pseudotuberculosis serotype IB (strain PB1/+) OX=502801 
GN=rhlB PE=3 SV=1
Length=428

 Score = 137 bits (345),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 113/342 (33%), Positives = 164/342 (48%), Gaps = 65/342 (19%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q  ++ +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHSDAESLSQVTG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P V    KRL ++
Sbjct  140  GTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSV---DKRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV----VVPVNPKTDRLWERLG  460
              SATL S+ V++L+ + M+   +V++   + +  T H +      P N +  RL + L 
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYVEV---EPLQKTGHRIKEELFYPSNEEKMRLLQTL-  250

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
                                                    I+E   D+ IIF  TK  C+
Sbjct  251  ----------------------------------------IEEEWPDRCIIFANTKHRCE  270

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             +        G     GH+     L GD    +R + LE F KGD+  L+ TDVAARG+ 
Sbjct  271  EI-------WGHLAADGHRVGL--LTGDVAQKKRLRILEDFTKGDLDILVATDVAARGLH  321

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  322  IPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEE  363


 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P + +A+E   +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAF  63


>sp|Q1CBQ4|RHLB_YERPA ATP-dependent RNA helicase RhlB OS=Yersinia 
pestis bv. Antiqua (strain Antiqua) OX=360102 GN=rhlB PE=3 
SV=1
Length=428

 Score = 137 bits (345),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 113/342 (33%), Positives = 164/342 (48%), Gaps = 65/342 (19%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q  ++ +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHSDAESLSQVTG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P V    KRL ++
Sbjct  140  GTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSV---DKRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV----VVPVNPKTDRLWERLG  460
              SATL S+ V++L+ + M+   +V++   + +  T H +      P N +  RL + L 
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYVEV---EPLQKTGHRIKEELFYPSNEEKMRLLQTL-  250

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
                                                    I+E   D+ IIF  TK  C+
Sbjct  251  ----------------------------------------IEEEWPDRCIIFANTKHRCE  270

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             +        G     GH+     L GD    +R + LE F KGD+  L+ TDVAARG+ 
Sbjct  271  EI-------WGHLAADGHRVGL--LTGDVAQKKRLRILEDFTKGDLDILVATDVAARGLH  321

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  322  IPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEE  363


 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P + +A+E   +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAF  63


>sp|A7FD47|RHLB_YERP3 ATP-dependent RNA helicase RhlB OS=Yersinia 
pseudotuberculosis serotype O:1b (strain IP 31758) OX=349747 
GN=rhlB PE=3 SV=1
Length=428

 Score = 137 bits (345),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 113/342 (33%), Positives = 164/342 (48%), Gaps = 65/342 (19%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q  ++ +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHSDAESLSQVTG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P V    KRL ++
Sbjct  140  GTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSV---DKRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV----VVPVNPKTDRLWERLG  460
              SATL S+ V++L+ + M+   +V++   + +  T H +      P N +  RL + L 
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYVEV---EPLQKTGHRIKEELFYPSNEEKMRLLQTL-  250

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
                                                    I+E   D+ IIF  TK  C+
Sbjct  251  ----------------------------------------IEEEWPDRCIIFANTKHRCE  270

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             +        G     GH+     L GD    +R + LE F KGD+  L+ TDVAARG+ 
Sbjct  271  EI-------WGHLAADGHRVGL--LTGDVAQKKRLRILEDFTKGDLDILVATDVAARGLH  321

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  322  IPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEE  363


 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P + +A+E   +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAF  63


>sp|P0A4D8|CSHA_STRR6 DEAD-box ATP-dependent RNA helicase CshA 
OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) OX=171101 
GN=cshA PE=3 SV=1
Length=524

 Score = 139 bits (350),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 107/363 (29%), Positives = 175/363 (48%), Gaps = 66/363 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+RELA Q+   + +F +     K+R   + GG +   Q+  L++G  IVVGTP
Sbjct  71   QALVIAPTRELAVQSQEELFRFGRS-KGVKVRS--VYGGSSIEKQIKALKSGAHIVVGTP  127

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GRL DL+    L L  +  L+LDEAD +L+ G+ + I  + +++P+        Q ++ S
Sbjct  128  GRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPE------NRQTLLFS  181

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV--HHVVVPVNPKTDRLWERLGKSHIR  465
            AT+    +K++  + M  P  V +  ++   + V  +++ V    K D +         R
Sbjct  182  ATMPD-AIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMT--------R  232

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
              DV            PE+                        AI+F RTK   D L + 
Sbjct  233  LMDVA----------QPEL------------------------AIVFGRTKRRVDELTRG  258

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
               +G         F    +HGD   ++R + L  FK G++  L+ TDVAARG+DI GV 
Sbjct  259  LKIRG---------FRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVT  309

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE---KVWYHVCSSRGKGCYNTR  642
            +V N  +P + ++YVHRIGR GRA + G +I+ VA  +    ++  ++   R KG     
Sbjct  310  HVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGLKPAS  369

Query  643  LKE  645
            ++E
Sbjct  370  VEE  372


 Score = 49.3 bits (116),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 40/61 (66%), Gaps = 0/61 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F+E+ +  ++   +E+  ++  + IQ ++IPL L G DV+  A+TG+GKT AF +P ++ 
Sbjct  3   FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEK  62

Query  64  V  64
           +
Sbjct  63  I  63


>sp|P0A4D7|CSHA_STRPN DEAD-box ATP-dependent RNA helicase CshA 
OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 
/ TIGR4) OX=170187 GN=cshA PE=3 SV=1
Length=524

 Score = 139 bits (350),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 107/363 (29%), Positives = 175/363 (48%), Gaps = 66/363 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+RELA Q+   + +F +     K+R   + GG +   Q+  L++G  IVVGTP
Sbjct  71   QALVIAPTRELAVQSQEELFRFGRS-KGVKVRS--VYGGSSIEKQIKALKSGAHIVVGTP  127

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GRL DL+    L L  +  L+LDEAD +L+ G+ + I  + +++P+        Q ++ S
Sbjct  128  GRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPE------NRQTLLFS  181

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV--HHVVVPVNPKTDRLWERLGKSHIR  465
            AT+    +K++  + M  P  V +  ++   + V  +++ V    K D +         R
Sbjct  182  ATMPD-AIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMT--------R  232

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
              DV            PE+                        AI+F RTK   D L + 
Sbjct  233  LMDVA----------QPEL------------------------AIVFGRTKRRVDELTRG  258

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
               +G         F    +HGD   ++R + L  FK G++  L+ TDVAARG+DI GV 
Sbjct  259  LKIRG---------FRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVT  309

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE---KVWYHVCSSRGKGCYNTR  642
            +V N  +P + ++YVHRIGR GRA + G +I+ VA  +    ++  ++   R KG     
Sbjct  310  HVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGLKPAS  369

Query  643  LKE  645
            ++E
Sbjct  370  VEE  372


 Score = 49.3 bits (116),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 40/61 (66%), Gaps = 0/61 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F+E+ +  ++   +E+  ++  + IQ ++IPL L G DV+  A+TG+GKT AF +P ++ 
Sbjct  3   FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEK  62

Query  64  V  64
           +
Sbjct  63  I  63


>sp|B5FN74|RHLB_SALDC ATP-dependent RNA helicase RhlB OS=Salmonella 
dublin (strain CT_02021853) OX=439851 GN=rhlB PE=3 SV=1
Length=421

 Score = 137 bits (345),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 109/339 (32%), Positives = 163/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAQATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA---AQRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +V+++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+++ 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEDI-  272

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
                   G     GH+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  273  ------WGHLAADGHRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 47.4 bits (111),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPQVVEALEKKRFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|P21693|DBPA_ECOLI ATP-dependent RNA helicase DbpA OS=Escherichia 
coli (strain K12) OX=83333 GN=dbpA PE=1 SV=2
Length=457

 Score = 138 bits (347),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 157/338 (46%), Gaps = 59/338 (17%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+RELA+Q    +++  +++ N K+  L + GG     Q   L++   I+V TP
Sbjct  73   QALVLCPTRELADQVAGELRRLARFLPNTKI--LTLCGGQPFGMQRDSLQHAPHIIVATP  130

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GRL D +  G ++L  +  LV+DEAD +L  G+SD I+ +    P         Q ++ S
Sbjct  131  GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP------ASRQTLLFS  184

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT     +  +S ++   P  +++   D++P           P   + +E   K  I   
Sbjct  185  ATWPEA-IAAISGRVQRDPLAIEIDSTDALP-----------PIEQQFYETSSKGKI---  229

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                                   +L+     R +  H+    ++FC TK DC  +     
Sbjct  230  ----------------------PLLQ-----RLLSLHQPSSCVVFCNTKKDCQAVCDALN  262

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
            + G          S + LHGD +  +R Q L RF  G  R L+ TDVAARG+DI  +  V
Sbjct  263  EVGQ---------SALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELV  313

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +N  L  + + +VHRIGR  RA   GLAIS  A E+ +
Sbjct  314  VNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ  351


 Score = 53.1 bits (126),  Expect = 6e-06, Method: Compositional matrix adjust.
 Identities = 29/73 (40%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query  1   MAAFSEMGVMPEIAQA-VEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
           M AFS + V+P      + E+ +L  T +QA ++P IL G DV + A+TGSGKT AF + 
Sbjct  1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG  60

Query  60  VIQIVYETLKDQQ  72
           ++Q +  +L   Q
Sbjct  61  LLQQIDASLFQTQ  73


>sp|P41378|IF4A_WHEAT Eukaryotic initiation factor 4A OS=Triticum 
aestivum OX=4565 PE=2 SV=1
Length=414

 Score = 137 bits (344),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 105/359 (29%), Positives = 166/359 (46%), Gaps = 65/359 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+RELA+Q    ++    Y+    ++    +GG + R+   +L +GV +VVGTP
Sbjct  111  QALVLAPTRELAQQIEKVMRALGDYL---GVKVHACVGGTSVREDQRILASGVHVVVGTP  167

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D+V    L    ++  VLDEAD +LS+G+ D I  +   +P       ++QV V S
Sbjct  168  GRVFDIVRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLP------GKIQVGVFS  221

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+   +  +++ K M+ P  + +K ++   + +    V V                   
Sbjct  222  ATMPP-EALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEK-----------------  263

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W   +  L   Y   AI      Q++IF  T+   D L     
Sbjct  264  ---------------EEWK--LDTLCDLYETLAIT-----QSVIFVNTRRKVDWL-----  296

Query  528  QQGGGPDK-KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                  DK +G   +    HGD   + R   +  F+ G  R LI TD+ ARGID+  V  
Sbjct  297  -----TDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL  351

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            VIN  LP + +NY HRIGR GR  R G+AI+ V  E E++ + +     +  YN  ++E
Sbjct  352  VINYDLPTQPENYQHRIGRSGRFGRKGVAINFVTREDERMLFDI-----QKFYNVVIEE  405


 Score = 34.3 bits (77),  Expect = 4.0, Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 31/60 (52%), Gaps = 0/60 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F +MG+   + + +    +  P+ IQ   I     G DV+  A++G+GKT  F   ++Q
Sbjct  42   SFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ  101


>sp|A8ACT3|RHLB_CITK8 ATP-dependent RNA helicase RhlB OS=Citrobacter 
koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) 
OX=290338 GN=rhlB PE=3 SV=1
Length=421

 Score = 137 bits (344),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 107/339 (32%), Positives = 163/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAQ---TTGLKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN---QRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +V+++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AI+F  TK  C+++ 
Sbjct  251  -------------------------------------IEEEWPDRAIVFANTKHRCEDIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E   +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPKVIEALENKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|Q2H720|DBP2_CHAGB ATP-dependent RNA helicase DBP2 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=DBP2 PE=3 SV=1
Length=562

 Score = 139 bits (350),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 168/341 (49%), Gaps = 53/341 (16%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  L++ P+RELA Q    I +F K   + ++R   + GGV    Q   L  GV++ +
Sbjct  208  DGPIVLVLAPTRELAVQIQQEITKFGK---SSRIRNTCVYGGVPKGPQTRDLSRGVEVCI  264

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D++ +G+ NL +V +LVLDEAD +L  G+   I ++   I Q+  D    Q  
Sbjct  265  ATPGRLIDMLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKI---IGQIRPD---RQTC  318

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT    +V+ L+   +           D +   +  + +  N +  ++ E + +S  
Sbjct  319  MWSATWPK-EVRALASDFL----------TDFIQVNIGSMDLAANHRITQVVEVVNESEK  367

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
            R                        K++K    +   KE + ++ +IF  TK   D + +
Sbjct  368  RD-----------------------KMIKHLEKIMEDKESQ-NKILIFTGTKRVADEITR  403

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
             F++Q G P         + +HGD++ +ER   L++FK G    ++ TDVA+RGID+  +
Sbjct  404  -FLRQDGWP--------ALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNI  454

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
             +V+N   P+  ++Y+HRIGR GRA   G AI+   T+  K
Sbjct  455  THVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNSK  495


 Score = 43.5 bits (101),  Expect = 0.006, Method: Compositional matrix adjust.
 Identities = 23/58 (40%), Positives = 32/58 (55%), Gaps = 0/58 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            F E G    +   V+   +  PT IQ++  P+ L G DV+  AETGSGKT  + +P I
Sbjct  138  FDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAI  195


>sp|P24346|DDX3_XENLA Putative ATP-dependent RNA helicase an3 
OS=Xenopus laevis OX=8355 GN=an3 PE=2 SV=1
Length=697

 Score = 140 bits (353),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 157/333 (47%), Gaps = 56/333 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P +L++ P+RELA Q     ++ +K+    ++R  ++ GG     Q+  LE G  ++V T
Sbjct  308  PLSLVLAPTRELAVQIY---EEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVAT  364

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL D++  GK+ L   ++LVLDEAD +L  G+   I R+  Q   +   G R Q ++ 
Sbjct  365  PGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-DTMPPKGVR-QTMMF  422

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT               FP  + +   D + + +   V  V   ++ + +++       
Sbjct  423  SAT---------------FPKEIQILARDFLDEYIFLAVGRVGSTSENITQKV-------  460

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ-AIIFCRTKIDCDNLEQY  525
                             +W E +   K  + +  +     D   ++F  TK   D LE +
Sbjct  461  -----------------VWVEEMD--KRSFLLDLLNATGKDSLTLVFVETKKGADALEDF  501

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
               +G         ++C  +HGDR   +R++ L +F+ G    L+ T VAARG+DI  V 
Sbjct  502  LYHEG---------YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVK  552

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            +VIN  LP + + YVHRIGR GR   +GLA S 
Sbjct  553  HVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF  585


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 25/84 (30%), Positives = 48/84 (57%), Gaps = 6/84 (7%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F ++ +   I   ++   +  PT +Q  +IP+I+   D++  A+TGSGKT AF +P+
Sbjct  220  IESFHDVTMGEIIMGNIQLTRYTRPTPVQKHAIPIIIEKRDLMACAQTGSGKTAAFLLPI  279

Query  61   IQIVY-----ETLKDQQE-GKKGK  78
            +  +Y     + +K  QE G+ G+
Sbjct  280  LSQIYADGPGDAMKHLQENGRYGR  303


>sp|Q8DDN6|RHLB_VIBVU ATP-dependent RNA helicase RhlB OS=Vibrio 
vulnificus (strain CMCP6) OX=216895 GN=rhlB PE=3 SV=1
Length=435

 Score = 137 bits (344),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 110/337 (33%), Positives = 166/337 (49%), Gaps = 59/337 (18%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P  P+A+I+ P+RELA Q  N+ +     I +  ++  L  GG +   QL+ L+ GVD++
Sbjct  82   PTQPRAIIMAPTRELAIQIYNDAEPL---IASTGIKAALAYGGESYDKQLTKLQGGVDVL  138

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            +GT GR+ D       NL+ ++ +VLDEAD +   G+   I  +  ++P   +  +RL +
Sbjct  139  IGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMP---APQERLNM  195

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKT-DRLWERLGKS  462
            +  SATL S+ V++L+ + MH P                HVVV    KT  R+ E L   
Sbjct  196  LF-SATL-SYRVQELAFEHMHNP---------------EHVVVEPEQKTGHRIQEEL--F  236

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
            +   +D  A   T                         I+E   D+AIIF  TK  C+++
Sbjct  237  YPSNEDKMALLQT------------------------LIEEEWPDRAIIFANTKYKCESI  272

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
              +           GH+     L GD    +R++ LE+F +G V  L+ TDVAARG+ I 
Sbjct  273  WAHLA-------ADGHRVGL--LTGDVPQKKREKILEQFTQGSVDLLVATDVAARGLHIP  323

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
             V +V N  LPD+ ++YVHRIGR GRA   G +IS  
Sbjct  324  QVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFA  360


 Score = 46.6 bits (109),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 20/53 (38%), Positives = 37/53 (70%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           F+++G+ P++ + +E+  +   T IQA ++P++L G D+   A+TG+GKT AF
Sbjct  11  FADLGLNPQVVEGLEKKGFEFCTPIQALALPVLLSGQDIAGQAQTGTGKTLAF  63


>sp|Q7MGP7|RHLB_VIBVY ATP-dependent RNA helicase RhlB OS=Vibrio 
vulnificus (strain YJ016) OX=196600 GN=rhlB PE=3 SV=1
Length=435

 Score = 137 bits (344),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 110/337 (33%), Positives = 166/337 (49%), Gaps = 59/337 (18%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P  P+A+I+ P+RELA Q  N+ +     I +  ++  L  GG +   QL+ L+ GVD++
Sbjct  82   PTQPRAIIMAPTRELAIQIYNDAEPL---IASTGIKAALAYGGESYDKQLAKLQGGVDVL  138

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            +GT GR+ D       NL+ ++ +VLDEAD +   G+   I  +  ++P   +  +RL +
Sbjct  139  IGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMP---APQERLNM  195

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKT-DRLWERLGKS  462
            +  SATL S+ V++L+ + MH P                HVVV    KT  R+ E L   
Sbjct  196  LF-SATL-SYRVQELAFEHMHNP---------------EHVVVEPEQKTGHRIQEEL--F  236

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
            +   +D  A   T                         I+E   D+AIIF  TK  C+++
Sbjct  237  YPSNEDKMALLQT------------------------LIEEEWPDRAIIFANTKYKCESI  272

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
              +           GH+     L GD    +R++ LE+F +G V  L+ TDVAARG+ I 
Sbjct  273  WAHLA-------ADGHRVGL--LTGDVPQKKREKILEQFTQGSVDLLVATDVAARGLHIP  323

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
             V +V N  LPD+ ++YVHRIGR GRA   G +IS  
Sbjct  324  QVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFA  360


 Score = 46.6 bits (109),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 20/53 (38%), Positives = 37/53 (70%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           F+++G+ P++ + +E+  +   T IQA ++P++L G D+   A+TG+GKT AF
Sbjct  11  FADLGLNPQVVEGLEKKGFEFCTPIQALALPVLLSGQDIAGQAQTGTGKTLAF  63


>sp|Q9ZRZ8|RH28_ARATH DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis 
thaliana OX=3702 GN=RH28 PE=2 SV=1
Length=789

 Score = 140 bits (354),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 115/387 (30%), Positives = 178/387 (46%), Gaps = 61/387 (16%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            A + LI+ P+RELA Q  + I+   ++ D   ++  LI+GG++ R+Q  VL +  DIVV 
Sbjct  238  ATRVLILTPTRELAVQIHSMIQNLAQFTD---IKCGLIVGGLSVREQEVVLRSMPDIVVA  294

Query  346  TPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            TPGR+ D L ++  ++L  +  L+LDEAD LL  G++  I  +    P      KR Q +
Sbjct  295  TPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCP------KRRQTM  348

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT+ + +VK+L +  ++ P  +        P  +   VV +                
Sbjct  349  LFSATM-TEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIR---------------  392

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                      TR       + S   +  K              + IIF  TK     L+ 
Sbjct  393  ---------RTREANQEAVLLSLCTRTFKS-------------KVIIFSGTKQAAHRLKI  430

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
             F   G              LHG+    +R  +LE F+K +V FLI TDVAARG+DI GV
Sbjct  431  LFGLAG---------LKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDVAARGLDIIGV  481

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLK  644
              VIN   P E  +YVHR+GR  RA R G A++ V T+ ++    V + +      +R+ 
Sbjct  482  QTVINYACPREIDSYVHRVGRTARAGREGYAVTFV-TDSDRSLLKVIAKKVGSKLKSRVI  540

Query  645  EDGGCTIWYNEMQLLSEIEEHLNCTIS  671
             +     W    Q++ E+E+  +  IS
Sbjct  541  PEQSIVKWS---QIIDEMEDQYSAVIS  564


 Score = 52.8 bits (125),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (63%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F E+ +   + +A E + +  PT IQA  IPL L G D+  +A TGSGKT AF++P ++
Sbjct  169  FMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLE  227


>sp|P16381|DDX3L_MOUSE Putative ATP-dependent RNA helicase Pl10 
OS=Mus musculus OX=10090 GN=D1Pas1 PE=1 SV=1
Length=660

 Score = 140 bits (352),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 154/333 (46%), Gaps = 56/333 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P +L++ P+RELA Q     ++F       ++R  ++ GG     Q+  LE G  ++V T
Sbjct  266  PISLVLAPTRELAVQIYEEARKFSY---RSRVRPCVVYGGADIGQQIRDLERGCHLLVAT  322

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL D++  GK+ L   ++LVLDEAD +L  G+   I R+  Q   +   G R   ++ 
Sbjct  323  PGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-DTMPPKGVR-HTMMF  380

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT               FP  + +   D + + +   V  V   ++ + +++       
Sbjct  381  SAT---------------FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKV-------  418

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAI-IFCRTKIDCDNLEQY  525
                             +W E     K  + +  +     D  I +F  TK   D+LE +
Sbjct  419  -----------------VWVEEAD--KRSFLLDLLNATGKDSLILVFVETKKGADSLEDF  459

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
               +G         ++C  +HGDR   +R++ L +F+ G    L+ T VAARG+DI  V 
Sbjct  460  LYHEG---------YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVK  510

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            +VIN  LP + + YVHRIGR GR   +GLA S 
Sbjct  511  HVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF  543


 Score = 48.1 bits (113),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 6/84 (7%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +FS++ +   I   +E   +  PT +Q  +IP+I    D++  A+TGSGKT AF +P+
Sbjct  178  IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI  237

Query  61   IQIVY-----ETLKDQQE-GKKGK  78
            +  +Y     E L+  +E GK G+
Sbjct  238  LSQIYTDGPGEALRAMKENGKYGR  261


>sp|Q887N8|RHLB_PSESM ATP-dependent RNA helicase RhlB OS=Pseudomonas 
syringae pv. tomato (strain ATCC BAA-871 / DC3000) OX=223283 
GN=rhlB PE=3 SV=1
Length=397

 Score = 135 bits (341),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 105/343 (31%), Positives = 155/343 (45%), Gaps = 78/343 (23%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVG  345
            P+ALI+ P+REL  Q   +     KY +   L  +  +GG+    QL  LE    DI+V 
Sbjct  84   PRALIIAPTRELVVQIAKDAADLTKYTN---LNVMTFVGGMDFDKQLKQLEARHCDILVA  140

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGRL D    G+++L  V  +VLDEAD +L  G   FI ++   I Q    G+R Q ++
Sbjct  141  TPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMG---FIPQVRQIIRQTPHKGER-QTLL  196

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV----------NPKTDRL  455
             SAT  + DV  L+++    P+ V+++  +   D V   +  V          N  TD  
Sbjct  197  FSATF-TEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYNLVTDNG  255

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRT  515
            WER+                                                  ++F   
Sbjct  256  WERV--------------------------------------------------MVFANR  265

Query  516  KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA  575
            K +   +E+  ++ G          +   L GD   H+R + LE F++G +R L+ TDVA
Sbjct  266  KDEVRRIEERLVRDG---------VNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVA  316

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
             RGI I G+ +VIN TLP+   +YVHRIGR GRA   G++IS 
Sbjct  317  GRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISF  359


 Score = 44.3 bits (103),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 0/64 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F +  + PE+  A++++ +   T IQA  +   L G D +  A+TG+GKT AF I +I+ 
Sbjct  10  FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ  69

Query  64  VYET  67
           + +T
Sbjct  70  LTQT  73


>sp|O25029|RHPA_HELPY DEAD-box ATP-dependent RNA helicase RhpA 
OS=Helicobacter pylori (strain ATCC 700392 / 26695) OX=85962 
GN=rhpA PE=1 SV=1
Length=492

 Score = 137 bits (346),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 93/333 (28%), Positives = 163/333 (49%), Gaps = 59/333 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+RELA Q  + I +  K+    + + + + GG + + Q   ++    +++ TP
Sbjct  89   EALVITPTRELAMQISDEIFKLGKHT---RTKTVCVYGGQSVKKQCEFIKKNPQVMIATP  145

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GRL D +   +++    + +VLDE+D +L  G+ D I  + + +P         Q+++ S
Sbjct  146  GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPS------EAQILLFS  199

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+    +K+L++KI+  P  + +      P  + +  +     T R +  +   H R  
Sbjct  200  ATMPE-PIKRLADKILENPIKIHI-----APSNITNTDI-----TQRFY--VINEHER--  244

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                              +EAI        +R +      ++I+F RTK + D L Q+  
Sbjct  245  ------------------AEAI--------MRLLDTQAPKKSIVFTRTKKEADELHQFLA  278

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
             +          +    LHGD    +R+ ++  FKK D   L+ TDVA+RG+DI GV +V
Sbjct  279  SKN---------YKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV  329

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
             N  LP   ++Y+HRIGR GRA + G+AI+LV 
Sbjct  330  FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVT  362


 Score = 56.6 bits (135),  Expect = 5e-07, Method: Compositional matrix adjust.
 Identities = 23/59 (39%), Positives = 42/59 (71%), Gaps = 0/59 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
           +F+++G+   + ++V E  +  P+ IQ ++IP +L G DV+  A+TG+GKT AF++P+I
Sbjct  21  SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPII  79


>sp|B7NTG2|RHLB_ECO7I ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O7:K1 (strain IAI39 / ExPEC) OX=585057 GN=rhlB PE=3 
SV=1
Length=421

 Score = 136 bits (342),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 107/339 (32%), Positives = 162/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAQATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN---QRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +++++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+ + 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEEIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|A7TEF4|FAL1_VANPO ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=FAL1 PE=3 SV=1
Length=399

 Score = 135 bits (341),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 101/337 (30%), Positives = 155/337 (46%), Gaps = 61/337 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGT  346
            +AL++ P+RELA Q    +     Y++   ++   + GG   +D L+ ++ NG  +V GT
Sbjct  93   QALVLSPTRELASQINQVVSNLGDYMN---VQSYAMTGGKTMKDDLNRMQKNGCQVVSGT  149

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLL--SQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            PGR+ D+     LN   V+ L+LDEAD LL  S G+   I  +  ++P         QV+
Sbjct  150  PGRVLDMFKRHLLNTRNVQMLILDEADELLGESLGFKQQIYDIFTKLPAAC------QVV  203

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            V SAT+ S D+ ++++K M  P  + +K ++   + +    V V                
Sbjct  204  VVSATM-SKDILEVTKKFMSDPVKILVKRDEISLEGIKQYYVNVEK--------------  248

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                              E W       K +          + Q +IFC TK   D L  
Sbjct  249  ------------------EDW-------KFDTLCDLYDSLTITQCVIFCNTKKKVDWLSA  283

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
               Q           F+ V +HGD K  +R + +  F+ G  R LI TDV ARGID+  V
Sbjct  284  KLTQSN---------FAVVSMHGDMKQEDRNKVMSDFRSGHSRVLISTDVWARGIDVQQV  334

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT  621
              VIN  +P+  +NY+HRIGR GR  R G+AI+ + +
Sbjct  335  SLVINYDIPEIMENYIHRIGRSGRFGRKGVAINFITS  371


 Score = 42.7 bits (99),  Expect = 0.010, Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 39/70 (56%), Gaps = 0/70 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  M +  ++ + +    +  P+ IQ+ +I  I+ G DV+  A++G+GKT  F+I ++Q
Sbjct  24  TFESMNLKDDLLRGIYGYGFEAPSAIQSRAITQIISGTDVIAQAQSGTGKTATFTIGMLQ  83

Query  63  IVYETLKDQQ  72
            +    KD Q
Sbjct  84  AIDLKRKDLQ  93


>sp|Q65N62|CSHA_BACLD DEAD-box ATP-dependent RNA helicase CshA 
OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 
2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL 
NRS-1264 / Gibson 46) OX=279010 GN=cshA PE=3 SV=1
Length=487

 Score = 137 bits (345),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 105/349 (30%), Positives = 169/349 (48%), Gaps = 66/349 (19%)

Query  281  KFLPNAP--KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            K  P +P  +A+++ P+RELA Q     ++  K   + + R L I GG     Q+  L+ 
Sbjct  64   KINPESPNIQAIVIAPTRELAIQVS---EELYKIGQDKRARVLPIYGGQDIGRQIRALKK  120

Query  339  GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
               I+VGTPGRL D ++   + L  V  +VLDEAD +L+ G+ + I  + + +P      
Sbjct  121  NPHIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVP------  174

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN--PKTDRLW  456
               Q ++ SAT+ +  +K+++E+ M  P  V +K ++     +    + V+   K D L 
Sbjct  175  AEHQTLLFSATMPA-PIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHERKKFDTLT  233

Query  457  ERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTK  516
              L        D+           SPE+                        AI+F RTK
Sbjct  234  RLL--------DIQ----------SPEL------------------------AIVFGRTK  251

Query  517  IDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAA  576
               D L +    +G         ++   +HGD    +R   L +FK+G +  L+ TDVAA
Sbjct  252  RRVDELTEALNLRG---------YTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDVAA  302

Query  577  RGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            RG+DI GV +V N  +P + ++YVHRIGR GRA + G+A++ + T +EK
Sbjct  303  RGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFI-TPREK  350


 Score = 51.6 bits (122),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 23/59 (39%), Positives = 39/59 (66%), Gaps = 0/59 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           F +  +  ++ +A++ M +   T IQA++IPL L   DV+  A+TG+GKT AF IP+++
Sbjct  5   FQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVE  63


>sp|Q329V8|RHLB_SHIDS ATP-dependent RNA helicase RhlB OS=Shigella 
dysenteriae serotype 1 (strain Sd197) OX=300267 GN=rhlB 
PE=3 SV=1
Length=421

 Score = 136 bits (342),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 107/339 (32%), Positives = 162/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NKPRALIMAPTRELAVQIHADAEPLAEATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN---QRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +++++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+ + 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEEIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 45.4 bits (106),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFSLHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|B7LU75|RHLB_ESCF3 ATP-dependent RNA helicase RhlB OS=Escherichia 
fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 
/ IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 
/ CDC 0568-73) OX=585054 GN=rhlB PE=3 SV=1
Length=421

 Score = 136 bits (342),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 107/339 (32%), Positives = 162/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAQATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN---QRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +++++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+ + 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEEIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|Q12S35|RHLB_SHEDO ATP-dependent RNA helicase RhlB OS=Shewanella 
denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) 
OX=318161 GN=rhlB PE=3 SV=1
Length=432

 Score = 136 bits (342),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 105/335 (31%), Positives = 162/335 (48%), Gaps = 59/335 (18%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+A+I+ P+RELA Q   +     K+     L+  ++ GG +   Q  VL+ GVDI++
Sbjct  83   NQPRAIIMAPTRELAIQIAKDANLLAKHTG---LKVGIVYGGESYEVQREVLDKGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GR+ D V  G ++L+ ++ +VLDEAD +   G+   I  +  ++P  +S   RL ++
Sbjct  140  GTTGRIIDYVRQGVISLNSIQAVVLDEADRMFDLGFIKDIRFLFRRMPDASS---RLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S  V++L+   M+ P  V++  E+     +   +  P      RL   L +  
Sbjct  197  F-SATL-SMKVQELAYDHMNDPEKVEVTPEEKTSKNIKEEIFYPSTEDKMRLLLTLME--  252

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                               E W E                    +AI+F  TK  C+NL 
Sbjct  253  -------------------EDWPE--------------------KAIVFSNTKHSCENLW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +        +  GH+     L GD    +R + LE+F  GD+  L+ TDVAARG+ I  
Sbjct  274  SWL-------EGDGHRVGL--LTGDVPQKKRIRILEQFTSGDLDVLVATDVAARGLHISD  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            V +V N  LPD+ ++YVHRIGR GRA   G+++S 
Sbjct  325  VSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSF  359


 Score = 42.7 bits (99),  Expect = 0.011, Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 35/55 (64%), Gaps = 0/55 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSI  58
           F+++ +  E+ QA+ E  +   T IQA S+P++L   D+   A+TG+GKT AF +
Sbjct  11  FADLPLHAEVIQALNENGFEFCTPIQALSLPVLLKAKDIAGQAQTGTGKTMAFLV  65


>sp|Q8CRP6|CSHA_STAES DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 
1200) OX=176280 GN=cshA PE=3 SV=1
Length=509

 Score = 137 bits (346),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 100/334 (30%), Positives = 163/334 (49%), Gaps = 62/334 (19%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            ++LI+ P+RELA Q    +++F K     K++ + + GG+    Q+ VL+ G  IVVGTP
Sbjct  71   QSLILAPTRELAMQVAEQLREFSK---GQKVQVVTVFGGMPIERQIKVLKRGPQIVVGTP  127

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D ++   L    +  L+LDEAD +++ G+ D +  + ++IP      ++ Q ++ S
Sbjct  128  GRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIP-----AEQRQTMLFS  182

Query  408  ATLHSFDVKKLSEKIMHFPTWVD-LKGEDSVPDT-VHHVVVPVNPKTDRLWERLGKSHIR  465
            AT+    +++L ++ M  P  +  +  E S P    ++ +V    K D     L      
Sbjct  183  ATMPKA-IQELVQQFMKAPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFL------  235

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
              DVH           PE+                        AI+F RTK   D L   
Sbjct  236  --DVH----------QPEL------------------------AIVFGRTKRRVDELTSA  259

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
             + +G         +    LHGD    +R + L++FK   +  L+ TDVAARG+DI GV 
Sbjct  260  LLSKG---------YKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDISGVS  310

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +V N  +P + ++Y HRIGR GRA + G+A++ V
Sbjct  311  HVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFV  344


 Score = 64.7 bits (156),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 42/64 (66%), Gaps = 0/64 (0%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           M  F E+G+  +  Q +E M +  PT IQ +SIP  L G D+L  A+TG+GKTGAF IP+
Sbjct  1   MQNFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPL  60

Query  61  IQIV  64
           I+ V
Sbjct  61  IEKV  64


>sp|P20447|DBP3_YEAST ATP-dependent RNA helicase DBP3 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP3 
PE=1 SV=2
Length=523

 Score = 138 bits (347),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 106/342 (31%), Positives = 164/342 (48%), Gaps = 61/342 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + L++ P+RELA Q  +N+       D   ++   + GGV   +Q   L+    +VV TP
Sbjct  184  QVLVISPTRELASQIYDNLIVL---TDKVGMQCCCVYGGVPKDEQRIQLKKS-QVVVATP  239

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GRL DL+  G ++LSQV +LVLDEAD +L +G+ + I  +  +     +D  + Q ++ +
Sbjct  240  GRLLDLLQEGSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRE-----TDASKRQTLMFT  294

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDT--VHHVVVPVNP--KTDRLWERLGKSH  463
            AT    +V++L+   M+ P  V +   D +     +  +V  V+P  K  +L E L K H
Sbjct  295  ATWPK-EVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYH  353

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                            + P+                     K ++ +IF   K +   +E
Sbjct  354  ----------------SGPK---------------------KNEKVLIFALYKKEAARVE  376

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
            +     G         ++   +HGD    +R Q L  FK G    L+ TDVAARG+DI  
Sbjct  377  RNLKYNG---------YNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPN  427

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            V  VIN+T P   ++YVHRIGR GRA + G A +L  TE+EK
Sbjct  428  VKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLF-TEQEK  468


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 22/37 (59%), Positives = 26/37 (70%), Gaps = 0/37 (0%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            PT IQA + P +L G DV+  AETGSGKT AF +P I
Sbjct  135  PTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAI  171


>sp|P41382|IF410_TOBAC Eukaryotic initiation factor 4A-10 OS=Nicotiana 
tabacum OX=4097 PE=2 SV=1
Length=413

 Score = 135 bits (341),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 103/359 (29%), Positives = 168/359 (47%), Gaps = 65/359 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+RELA+Q    ++    Y+    ++    +GG + R+   +L++GV +VVGTP
Sbjct  110  QALVLAPTRELAQQIEKVMRALGDYL---GVKVHACVGGTSVREDQRILQSGVHVVVGTP  166

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++  VLDEAD +LS+G+ D I  +   +P       ++QV V S
Sbjct  167  GRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLP------PKIQVGVFS  220

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+   +  +++ K M+ P  + +K +D   + +    V V+                  
Sbjct  221  ATMPP-EALEITRKFMNKPVRILVKRDDVTLEGIKQFYVNVD------------------  261

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W   ++ L   Y   AI      Q++IF  T+   D L     
Sbjct  262  --------------KEEWK--LETLCDLYETLAIT-----QSVIFVNTRRKVDWL-----  295

Query  528  QQGGGPDK-KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                  DK +    +    HGD   + R   +  F+ G  R LI TD+ ARGID+  V  
Sbjct  296  -----TDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL  350

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            VIN  LP + +NY+HRIGR GR  R G+AI+ V  + E++   +     +  YN  ++E
Sbjct  351  VINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDI-----QKFYNVVIEE  404


 Score = 33.9 bits (76),  Expect = 5.9, Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 0/60 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +F  MG+   + + +    +  P+ IQ   I     G DV+  A++G+GKT  F   V+Q
Sbjct  41  SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQ  100


>sp|B1LLV3|RHLB_ECOSM ATP-dependent RNA helicase RhlB OS=Escherichia 
coli (strain SMS-3-5 / SECEC) OX=439855 GN=rhlB PE=3 
SV=1
Length=421

 Score = 136 bits (342),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 107/339 (32%), Positives = 162/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAQATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLCAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN---QRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +++++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+ + 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEEIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|B7NF85|RHLB_ECOLU ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O17:K52:H18 (strain UMN026 / ExPEC) OX=585056 GN=rhlB 
PE=3 SV=1
Length=421

 Score = 136 bits (342),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 107/339 (32%), Positives = 162/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAEATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN---QRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +++++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+ + 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEEIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|Q1DZK8|DBP3_COCIM ATP-dependent RNA helicase DBP3 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DBP3 PE=3 SV=2
Length=515

 Score = 137 bits (346),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 107/339 (32%), Positives = 161/339 (47%), Gaps = 52/339 (15%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P ALI+ P+RELA Q  + + +F   +D   +    I GG     Q   + N   +V+ T
Sbjct  173  PCALIITPTRELAVQIYDQLLRFSSAVD---VGIACIYGGSPKDHQRREIRNA-SVVIAT  228

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL D  +   +NLS V++LVLDEAD +L +G+   I  +   IP      ++ Q I+ 
Sbjct  229  PGRLKDFQADQTINLSGVKYLVLDEADRMLDKGFEQDIQDIVKGIPST----QKRQTIMF  284

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            +AT     V+ L+      P                 V V +   +D    +  K  +  
Sbjct  285  TATW-PIGVRNLAASFTKNP-----------------VTVTIGDSSDIRANKRIKQMVEV  326

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
               + KD            S  +++L+  Y       H++   ++FC  K +   +E++ 
Sbjct  327  LQPYEKD------------SRLLELLR-RYQDGGKNNHRI---LVFCLYKKEAMRVERFI  370

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
              +G         F    +HGD    ER ++LE FK G +  L+ TDVAARG+DI  V  
Sbjct  371  GSKG---------FKVAGIHGDMSQTERFRSLEAFKSGSISLLVATDVAARGLDIPAVKL  421

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            V+NVT P   ++YVHRIGR GRA   GLAI+L  TE++K
Sbjct  422  VLNVTFPLTIEDYVHRIGRTGRAGAEGLAITLF-TERDK  459


 Score = 49.7 bits (117),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 55/116 (47%), Gaps = 14/116 (12%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTG  84
            PT IQA S PL   G D++  AETGSGKT AF +P ++ V E L + +   K    I T 
Sbjct  122  PTPIQAVSWPLAFAGRDLIGVAETGSGKTLAFGLPCLRRVLE-LNNSETSCKPCALIITP  180

Query  85   ASVLNKWQMNPYDRGSAFAIGSD-GLCC---------QSREVKEWHGCRATKGLMK  130
               L    +  YD+   F+   D G+ C         Q RE++      AT G +K
Sbjct  181  TREL---AVQIYDQLLRFSSAVDVGIACIYGGSPKDHQRREIRNASVVIATPGRLK  233


>sp|Q0SYX0|RHLB_SHIF8 ATP-dependent RNA helicase RhlB OS=Shigella 
flexneri serotype 5b (strain 8401) OX=373384 GN=rhlB PE=3 
SV=1
Length=421

 Score = 136 bits (342),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 107/339 (32%), Positives = 162/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +      +   L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLA---EATGLKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN---QRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +++++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+ + 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEEIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|B5YY28|RHLB_ECO5E ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O157:H7 (strain EC4115 / EHEC) OX=444450 GN=rhlB 
PE=3 SV=1
Length=421

 Score = 136 bits (342),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 107/339 (32%), Positives = 162/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAEATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN---QRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +++++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+ + 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEEIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|Q7MYL2|RHLB_PHOLL ATP-dependent RNA helicase RhlB OS=Photorhabdus 
laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 
/ TT01) OX=243265 GN=rhlB PE=3 SV=1
Length=428

 Score = 136 bits (342),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 107/342 (31%), Positives = 166/342 (49%), Gaps = 65/342 (19%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q  ++ +   +      L+  L  GG     QL +LE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIYSDAEDLAQATG---LKMGLAYGGDGYDKQLKILESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D    G +NL+ V+ +VLDEAD +   G+   I  +  ++P V    +R+ ++
Sbjct  140  GTTGRLIDYTKQGHINLNAVQVVVLDEADRMYDLGFIKDIRWLFRRMPPV---NERMNLL  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV----VVPVNPKTDRLWERLG  460
              SATL S+ V++L+ + M+   ++++   + +  T H +      P N +  RL + L 
Sbjct  197  F-SATL-SYRVRELAFEQMNHAEYIEV---EPLQKTGHRIREELFYPSNEEKMRLLQTL-  250

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
                                                    ++E   D+ IIF  TK  C+
Sbjct  251  ----------------------------------------LEEEWPDRCIIFANTKHRCE  270

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
            ++  +    G       H+     L GD    +R + LE F  G++  L+ TDVAARG+ 
Sbjct  271  DIWAHLAADG-------HRVGL--LTGDVAQKKRLRILEEFSNGNIDILVATDVAARGLH  321

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  322  IPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEE  363


 Score = 40.8 bits (94),  Expect = 0.044, Method: Compositional matrix adjust.
 Identities = 20/53 (38%), Positives = 33/53 (62%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A++   +   T IQA ++P  + G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPKVIEALDNKGFSNCTPIQALTLPFTVEGRDVAGQAQTGTGKTLAF  63


>sp|P35683|IF4A1_ORYSJ Eukaryotic initiation factor 4A-1 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os06g0701100 PE=2 SV=2
Length=414

 Score = 135 bits (341),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 112/415 (27%), Positives = 186/415 (45%), Gaps = 75/415 (18%)

Query  240  FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQ--------VTQTKFLPNAPKALI  291
            + +G E+     + G V   K  D  +++   SG  +        + Q  +     +AL+
Sbjct  57   YAYGFEKPSAIQQRGIVPFCKGLD--VIQQAQSGTGKTATFCSGILQQLDYAVVECQALV  114

Query  292  VEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLD  351
            + P+RELA+Q    ++    Y+    ++    +GG + R+   +L +GV +VVGTPGR+ 
Sbjct  115  LAPTRELAQQIEKVMRALGDYL---GVKVHACVGGTSVREDQRILASGVHVVVGTPGRVF  171

Query  352  DLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLH  411
            D++    L    ++  VLDEAD +LS+G+ D I  +   +P       ++QV V SAT+ 
Sbjct  172  DMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP------SKIQVGVFSATMP  225

Query  412  SFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHA  471
              +  +++ K M+ P  + +K ++   + +    V V                       
Sbjct  226  P-EALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEK---------------------  263

Query  472  KDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGG  531
                       E W   +  L   Y   AI      Q++IF  T+   D L         
Sbjct  264  -----------EEWK--LDTLCDLYETLAIT-----QSVIFVNTRRKVDWL---------  296

Query  532  GPDK-KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINV  590
              DK +G   +    HGD   + R   +  F+ G  R LI TD+ ARGID+  V  VIN 
Sbjct  297  -TDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY  355

Query  591  TLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
             LP + +NY+HRIGR GR  R G+AI+ V  + E++ + +     +  YN  ++E
Sbjct  356  DLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI-----QRFYNVVIEE  405


 Score = 34.7 bits (78),  Expect = 3.9, Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 31/60 (52%), Gaps = 0/60 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F +MG+   + + +    +  P+ IQ   I     G DV+  A++G+GKT  F   ++Q
Sbjct  42   SFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ  101


>sp|Q41741|IF4A_MAIZE Eukaryotic initiation factor 4A OS=Zea mays 
OX=4577 PE=2 SV=1
Length=410

 Score = 135 bits (341),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 124/488 (25%), Positives = 205/488 (42%), Gaps = 97/488 (20%)

Query  166  GFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGL-------AFEI  218
            G    G +  +KQ+D   +E    D    Y D+ +    F   G    L        FE 
Sbjct  3    GLAPEGSQFDDKQYDKKMQEILTEDFFTSYDDVCES---FDSMGLQENLLRGIYAYGFEK  59

Query  219  PPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVT  278
            P  ++ + + P C                      G   + +A  G   K+    +  + 
Sbjct  60   PSAIQQRGIVPFC---------------------KGLDVIQQAQSG-TGKTATFCSGILQ  97

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            Q  +     +AL++ P+RELA+Q    ++    Y+    ++    +GG + R+   +L +
Sbjct  98   QLDYGLVECQALVLAPTRELAQQIEKVMRALGDYL---GVKVHACVGGTSVREDQRILAS  154

Query  339  GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
            GV +VVGTPGR+ D++    L    ++  VLDEAD +LS+G+ D I  +   +P      
Sbjct  155  GVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLP------  208

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER  458
             ++QV V SAT+   +  +++ K M+ P  + +K ++   + +    V ++         
Sbjct  209  SKIQVGVFSATMPP-EALEITRKFMNKPVRILVKRDELTLEGIKQFYVNIDK--------  259

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
                                    E W   +  L   Y   AI      Q++IF  T+  
Sbjct  260  ------------------------EDWK--LDTLCDLYETLAIT-----QSVIFVNTRRK  288

Query  519  CDNLEQYFIQQGGGPDK-KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
             D L           DK +    +    HGD   + R   +  F+ G  R LI TD+ AR
Sbjct  289  VDWL----------TDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLAR  338

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
            GID+  V  VIN  LP + +NY+HRIGR GR  R G+AI+ V  + E++ + V     + 
Sbjct  339  GIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERIVFDV-----QR  393

Query  638  CYNTRLKE  645
             YN  ++E
Sbjct  394  FYNVTVEE  401


 Score = 33.9 bits (76),  Expect = 5.5, Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 0/60 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +F  MG+   + + +    +  P+ IQ   I     G DV+  A++G+GKT  F   ++Q
Sbjct  38  SFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ  97


>sp|P41381|IF4A8_TOBAC Eukaryotic initiation factor 4A-8 OS=Nicotiana 
tabacum OX=4097 PE=2 SV=1
Length=413

 Score = 135 bits (341),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 103/358 (29%), Positives = 166/358 (46%), Gaps = 63/358 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+RELA+Q    ++    Y+    ++    +GG + R+   +L  GV ++VGTP
Sbjct  110  QALVLAPTRELAQQIEKVMRALGDYL---GVKVHACVGGTSVREDQRILAAGVHVIVGTP  166

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    +R  VLDEAD +LS+G+ D I  +   +P       ++QV V S
Sbjct  167  GRVFDMLRRQSLRPDYLRMFVLDEADEMLSRGFKDQIYDIFQMLP------TKVQVGVFS  220

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+   +   ++ K M+ P  + +K ++   + +    V V+                  
Sbjct  221  ATMPP-EALDITRKFMNKPVRILVKRDELTLEGIKQFYVNVDK-----------------  262

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W   ++ L   Y   AI      Q++IF  T+   D L     
Sbjct  263  ---------------EEWK--LETLCDLYETLAIT-----QSVIFVNTRRKVDWLTDKM-  299

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
                    + H  S    HGD   + R   +  F+ G  R LI TD+ ARGID+  V  V
Sbjct  300  ------RTRDHTVSAT--HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLV  351

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            IN  LP + +NY+HRIGR GR  R G+AI+ V T+ E++ + +     +  YN  ++E
Sbjct  352  INYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLFDI-----QKFYNVIIEE  404


 Score = 33.5 bits (75),  Expect = 7.5, Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 0/60 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +F  MG+   + + +    +  P+ IQ   I     G DV+  A++G+GKT  F   ++Q
Sbjct  41  SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ  100


>sp|Q3YVI4|RHLB_SHISS ATP-dependent RNA helicase RhlB OS=Shigella 
sonnei (strain Ss046) OX=300269 GN=rhlB PE=3 SV=1
Length=421

 Score = 135 bits (341),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 107/339 (32%), Positives = 162/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAEATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN---QRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +++++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+ + 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEEIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|P0A8K0|RHLB_SHIFL ATP-dependent RNA helicase RhlB OS=Shigella 
flexneri OX=623 GN=rhlB PE=3 SV=2
Length=421

 Score = 135 bits (341),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 107/339 (32%), Positives = 162/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAEATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN---QRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +++++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+ + 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEEIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|Q31UK5|RHLB_SHIBS ATP-dependent RNA helicase RhlB OS=Shigella 
boydii serotype 4 (strain Sb227) OX=300268 GN=rhlB PE=3 
SV=1
Length=421

 Score = 135 bits (341),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 107/339 (32%), Positives = 162/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAEATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN---QRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +++++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+ + 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEEIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 22/53 (42%), Positives = 34/53 (64%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ + +E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPKVVEVLEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|B2TU12|RHLB_SHIB3 ATP-dependent RNA helicase RhlB OS=Shigella 
boydii serotype 18 (strain CDC 3083-94 / BS512) OX=344609 
GN=rhlB PE=3 SV=1
Length=421

 Score = 135 bits (341),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 107/339 (32%), Positives = 162/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAEATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN---QRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +++++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+ + 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEEIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 22/53 (42%), Positives = 34/53 (64%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ + +E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPKVVEVLEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|Q1R4F9|RHLB_ECOUT ATP-dependent RNA helicase RhlB OS=Escherichia 
coli (strain UTI89 / UPEC) OX=364106 GN=rhlB PE=3 SV=1
Length=421

 Score = 135 bits (341),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 107/339 (32%), Positives = 162/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAEATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN---QRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +++++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+ + 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEEIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|B6I4B6|RHLB_ECOSE ATP-dependent RNA helicase RhlB OS=Escherichia 
coli (strain SE11) OX=409438 GN=rhlB PE=3 SV=1
Length=421

 Score = 135 bits (341),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 107/339 (32%), Positives = 162/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAEATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN---QRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +++++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+ + 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEEIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|P0A8J8|RHLB_ECOLI ATP-dependent RNA helicase RhlB OS=Escherichia 
coli (strain K12) OX=83333 GN=rhlB PE=1 SV=2
Length=421

 Score = 135 bits (341),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 107/339 (32%), Positives = 162/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAEATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN---QRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +++++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+ + 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEEIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|B1IWC0|RHLB_ECOLC ATP-dependent RNA helicase RhlB OS=Escherichia 
coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 
8545 / WDCM 00012 / Crooks) OX=481805 GN=rhlB PE=3 SV=1
Length=421

 Score = 135 bits (341),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 107/339 (32%), Positives = 162/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAEATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN---QRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +++++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+ + 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEEIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|P0A8J9|RHLB_ECOL6 ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 
GN=rhlB PE=3 SV=2
Length=421

 Score = 135 bits (341),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 107/339 (32%), Positives = 162/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAEATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN---QRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +++++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+ + 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEEIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|Q0TAU3|RHLB_ECOL5 ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O6:K15:H31 (strain 536 / UPEC) OX=362663 GN=rhlB 
PE=3 SV=1
Length=421

 Score = 135 bits (341),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 107/339 (32%), Positives = 162/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAEATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN---QRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +++++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+ + 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEEIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|A1AHV0|RHLB_ECOK1 ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O1:K1 / APEC OX=405955 GN=rhlB PE=3 SV=1
Length=421

 Score = 135 bits (341),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 107/339 (32%), Positives = 162/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAEATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN---QRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +++++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+ + 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEEIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|A8A6N4|RHLB_ECOHS ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O9:H4 (strain HS) OX=331112 GN=rhlB PE=3 SV=1
Length=421

 Score = 135 bits (341),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 107/339 (32%), Positives = 162/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAEATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN---QRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +++++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+ + 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEEIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|B1X9Z4|RHLB_ECODH ATP-dependent RNA helicase RhlB OS=Escherichia 
coli (strain K12 / DH10B) OX=316385 GN=rhlB PE=3 SV=1
Length=421

 Score = 135 bits (341),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 107/339 (32%), Positives = 162/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAEATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN---QRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +++++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+ + 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEEIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|C4ZZ48|RHLB_ECOBW ATP-dependent RNA helicase RhlB OS=Escherichia 
coli (strain K12 / MC4100 / BW2952) OX=595496 GN=rhlB 
PE=3 SV=1
Length=421

 Score = 135 bits (341),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 107/339 (32%), Positives = 162/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAEATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN---QRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +++++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+ + 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEEIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|B7M5C7|RHLB_ECO8A ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O8 (strain IAI1) OX=585034 GN=rhlB PE=3 SV=1
Length=421

 Score = 135 bits (341),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 107/339 (32%), Positives = 162/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAEATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN---QRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +++++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+ + 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEEIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|B7MR01|RHLB_ECO81 ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O81 (strain ED1a) OX=585397 GN=rhlB PE=3 SV=1
Length=421

 Score = 135 bits (341),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 107/339 (32%), Positives = 162/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAEATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN---QRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +++++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+ + 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEEIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|B7L8B6|RHLB_ECO55 ATP-dependent RNA helicase RhlB OS=Escherichia 
coli (strain 55989 / EAEC) OX=585055 GN=rhlB PE=3 SV=1
Length=421

 Score = 135 bits (341),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 107/339 (32%), Positives = 162/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAEATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN---QRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +++++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+ + 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEEIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|B7MGJ1|RHLB_ECO45 ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O45:K1 (strain S88 / ExPEC) OX=585035 GN=rhlB PE=3 
SV=1
Length=421

 Score = 135 bits (341),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 107/339 (32%), Positives = 162/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAEATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN---QRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +++++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+ + 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEEIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|B7UMN5|RHLB_ECO27 ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O127:H6 (strain E2348/69 / EPEC) OX=574521 GN=rhlB 
PE=3 SV=1
Length=421

 Score = 135 bits (341),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 107/339 (32%), Positives = 162/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAEATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN---QRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +++++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+ + 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEEIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|A7ZTY2|RHLB_ECO24 ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O139:H28 (strain E24377A / ETEC) OX=331111 GN=rhlB 
PE=3 SV=1
Length=421

 Score = 135 bits (341),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 107/339 (32%), Positives = 162/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAEATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN---QRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +++++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+ + 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEEIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE  363


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|Q5RF43|DDX3Y_PONAB ATP-dependent RNA helicase DDX3Y OS=Pongo 
abelii OX=9601 GN=DDX3Y PE=2 SV=1
Length=658

 Score = 139 bits (350),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 96/333 (29%), Positives = 155/333 (47%), Gaps = 56/333 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P +L++ P+RELA Q     ++F       ++R  ++ GG     Q+  LE G  ++V T
Sbjct  265  PISLVLAPTRELAVQIYEEARKFSY---RSRVRPCVVYGGADIGQQIRDLERGCHLLVAT  321

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL D++  GK+ L   ++LVLDEAD +L  G+   I R+  Q   +   G R   ++ 
Sbjct  322  PGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-DTMPPKGVR-HTMMF  379

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT               FP  + +   D + + +   V  V   ++ + +++       
Sbjct  380  SAT---------------FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKV-------  417

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ-AIIFCRTKIDCDNLEQY  525
                             +W E +   K  + +  +     D   ++F  TK   D+LE +
Sbjct  418  -----------------VWVEDLD--KRSFLLDLLGATGRDSLTLVFVETKKGADSLEDF  458

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
               +G         ++C  +HGDR   +R++ L +F+ G    L+ T VAARG+DI  V 
Sbjct  459  LYHEG---------YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVR  509

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            +VIN  LP + + YVHRIGR GR   +GLA S 
Sbjct  510  HVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF  542


 Score = 50.8 bits (120),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 29/81 (36%), Positives = 47/81 (58%), Gaps = 6/81 (7%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS++ +   I   +E   +  PT +Q  +IP+I G  D++  A+TGSGKT AF +P++  
Sbjct  180  FSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQ  239

Query  64   VY-----ETLKDQQE-GKKGK  78
            +Y     E LK  +E G+ G+
Sbjct  240  IYTDGPGEALKAVKENGRYGR  260


>sp|A6ZUA1|DBP3_YEAS7 ATP-dependent RNA helicase DBP3 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DBP3 PE=3 SV=1
Length=523

 Score = 137 bits (346),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 106/342 (31%), Positives = 164/342 (48%), Gaps = 61/342 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + L++ P+RELA Q  +N+       D   ++   + GGV   +Q   L+    +VV TP
Sbjct  184  QVLVISPTRELASQIYDNLIVL---TDKVGMQCCCVYGGVPKDEQRIQLKKS-QVVVATP  239

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GRL DL+  G ++LSQV +LVLDEAD +L +G+ + I  +  +     +D  + Q ++ +
Sbjct  240  GRLLDLLQEGSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRE-----TDASKRQTLMFT  294

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDT--VHHVVVPVNP--KTDRLWERLGKSH  463
            AT    +V++L+   M+ P  V +   D +     +  +V  V+P  K  +L E L K H
Sbjct  295  ATWPK-EVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYH  353

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                            + P+                     K ++ +IF   K +   +E
Sbjct  354  ----------------SGPK---------------------KNEKVLIFALYKKEAARVE  376

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
            +     G         ++   +HGD    +R Q L  FK G    L+ TDVAARG+DI  
Sbjct  377  RNLKYNG---------YNIAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPN  427

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            V  VIN+T P   ++YVHRIGR GRA + G A +L  TE+EK
Sbjct  428  VKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLF-TEQEK  468


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 22/37 (59%), Positives = 26/37 (70%), Gaps = 0/37 (0%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            PT IQA + P +L G DV+  AETGSGKT AF +P I
Sbjct  135  PTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAI  171


>sp|O00571|DDX3X_HUMAN ATP-dependent RNA helicase DDX3X OS=Homo 
sapiens OX=9606 GN=DDX3X PE=1 SV=3
Length=662

 Score = 139 bits (350),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 96/333 (29%), Positives = 154/333 (46%), Gaps = 56/333 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P +L++ P+RELA Q     ++F       ++R  ++ GG     Q+  LE G  ++V T
Sbjct  267  PISLVLAPTRELAVQIYEEARKFSY---RSRVRPCVVYGGADIGQQIRDLERGCHLLVAT  323

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL D++  GK+ L   ++LVLDEAD +L  G+   I R+  Q   +   G R   ++ 
Sbjct  324  PGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-DTMPPKGVR-HTMMF  381

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT               FP  + +   D + + +   V  V   ++ + +++       
Sbjct  382  SAT---------------FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKV-------  419

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ-AIIFCRTKIDCDNLEQY  525
                             +W E     K  + +  +     D   ++F  TK   D+LE +
Sbjct  420  -----------------VWVEESD--KRSFLLDLLNATGKDSLTLVFVETKKGADSLEDF  460

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
               +G         ++C  +HGDR   +R++ L +F+ G    L+ T VAARG+DI  V 
Sbjct  461  LYHEG---------YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVK  511

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            +VIN  LP + + YVHRIGR GR   +GLA S 
Sbjct  512  HVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF  544


 Score = 47.8 bits (112),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 6/84 (7%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +FS++ +   I   +E   +  PT +Q  +IP+I    D++  A+TGSGKT AF +P+
Sbjct  179  IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI  238

Query  61   IQIVY-----ETLKDQQE-GKKGK  78
            +  +Y     E L+  +E G+ G+
Sbjct  239  LSQIYSDGPGEALRAMKENGRYGR  262


>sp|Q8XAT4|RHLB_ECO57 ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O157:H7 OX=83334 GN=rhlB PE=3 SV=3
Length=421

 Score = 135 bits (341),  Expect = 5e-33, Method: Compositional matrix adjust.
 Identities = 107/339 (32%), Positives = 162/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q   + +   +      L+  L  GG     QL VLE+GVDI++
Sbjct  83   NQPRALIMAPTRELAVQIHADAEPLAEATG---LKLGLAYGGDGYDKQLKVLESGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +NL  ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN---QRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +++++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+AIIF  TK  C+ + 
Sbjct  251  -------------------------------------IEEEWPDRAIIFANTKHRCEEIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F +GD+  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGANGHSISLACEE  363


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF  63


>sp|P0CQ79|DBP3_CRYNB ATP-dependent RNA helicase DBP3 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=DBP3 PE=3 SV=1
Length=605

 Score = 138 bits (348),  Expect = 5e-33, Method: Compositional matrix adjust.
 Identities = 109/345 (32%), Positives = 168/345 (49%), Gaps = 54/345 (16%)

Query  283  LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL-ENGVD  341
            +P   + L++ P+RELA+Q+  ++  F + +    L+ + I GGV    Q   L +    
Sbjct  251  VPGQIQMLVLAPTRELAQQSHEHLSAFGEQVG---LKSVCIFGGVGKDGQARELSQKDTR  307

Query  342  IVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL  401
            +VVGTPGR  DL  +G+L+LS V +LVLDEAD +L  G+ + I R+    P    +G+  
Sbjct  308  VVVGTPGRTLDLADSGELDLSSVSYLVLDEADRMLDAGFENDIRRIIAHTPG-HKEGR--  364

Query  402  QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED-SVPDTVHHVV-VPVNPKTD--RLWE  457
            Q ++ SAT     V++L+   ++ P  + +  ++ S    +  +V V  NP+    RL  
Sbjct  365  QTVMFSATWPE-SVRRLASTFLNNPLRITVGSDELSANKRIEQIVEVLDNPRDKDFRLTH  423

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
             L K+H++   VH    T P                              + ++F   K 
Sbjct  424  HL-KAHLK---VHPNSKTSP-----------------------------TRILVFALYKK  450

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
            +   LE Y I++ G        ++   LHGD     R + LE FK G    L+ TDVAAR
Sbjct  451  EAQRLE-YTIRRAG--------YAVGALHGDMTQEARFKALEAFKTGQQNVLVATDVAAR  501

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            G+DI  V  VINVT P   +++VHR GR GRA + G A++    E
Sbjct  502  GLDIPDVGLVINVTFPLTTEDFVHRCGRTGRAGKTGKAVTFFTGE  546


 Score = 42.4 bits (98),  Expect = 0.016, Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 33/54 (61%), Gaps = 1/54 (2%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGK  78
            PT IQA S P +L   DV+  AETGSGKT AF +P I ++ + L      KKG+
Sbjct  196  PTPIQACSWPALLSKKDVVGIAETGSGKTLAFGVPGINLLSQ-LPPVTGSKKGR  248


>sp|O15523|DDX3Y_HUMAN ATP-dependent RNA helicase DDX3Y OS=Homo 
sapiens OX=9606 GN=DDX3Y PE=1 SV=2
Length=660

 Score = 139 bits (350),  Expect = 5e-33, Method: Compositional matrix adjust.
 Identities = 96/333 (29%), Positives = 155/333 (47%), Gaps = 56/333 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P +L++ P+RELA Q     ++F       ++R  ++ GG     Q+  LE G  ++V T
Sbjct  265  PISLVLAPTRELAVQIYEEARKFSY---RSRVRPCVVYGGADIGQQIRDLERGCHLLVAT  321

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL D++  GK+ L   ++LVLDEAD +L  G+   I R+  Q   +   G R   ++ 
Sbjct  322  PGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-DTMPPKGVR-HTMMF  379

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT               FP  + +   D + + +   V  V   ++ + +++       
Sbjct  380  SAT---------------FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKV-------  417

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ-AIIFCRTKIDCDNLEQY  525
                             +W E +   K  + +  +     D   ++F  TK   D+LE +
Sbjct  418  -----------------VWVEDLD--KRSFLLDILGATGSDSLTLVFVETKKGADSLEDF  458

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
               +G         ++C  +HGDR   +R++ L +F+ G    L+ T VAARG+DI  V 
Sbjct  459  LYHEG---------YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVR  509

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            +VIN  LP + + YVHRIGR GR   +GLA S 
Sbjct  510  HVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF  542


 Score = 50.8 bits (120),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 29/81 (36%), Positives = 47/81 (58%), Gaps = 6/81 (7%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS++ +   I   +E   +  PT +Q  +IP+I G  D++  A+TGSGKT AF +P++  
Sbjct  180  FSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQ  239

Query  64   VY-----ETLKDQQE-GKKGK  78
            +Y     E LK  +E G+ G+
Sbjct  240  IYTDGPGEALKAVKENGRYGR  260


>sp|P0CQ78|DBP3_CRYNJ ATP-dependent RNA helicase DBP3 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=DBP3 PE=3 SV=1
Length=605

 Score = 138 bits (348),  Expect = 5e-33, Method: Compositional matrix adjust.
 Identities = 109/345 (32%), Positives = 168/345 (49%), Gaps = 54/345 (16%)

Query  283  LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL-ENGVD  341
            +P   + L++ P+RELA+Q+  ++  F + +    L+ + I GGV    Q   L +    
Sbjct  251  VPGQIQMLVLAPTRELAQQSHEHLSAFGEQVG---LKSVCIFGGVGKDGQARELSQKDTR  307

Query  342  IVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL  401
            +VVGTPGR  DL  +G+L+LS V +LVLDEAD +L  G+ + I R+    P    +G+  
Sbjct  308  VVVGTPGRTLDLADSGELDLSSVSYLVLDEADRMLDAGFENDIRRIIAHTPG-HKEGR--  364

Query  402  QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED-SVPDTVHHVV-VPVNPKTD--RLWE  457
            Q ++ SAT     V++L+   ++ P  + +  ++ S    +  +V V  NP+    RL  
Sbjct  365  QTVMFSATWPE-SVRRLASTFLNNPLRITVGSDELSANKRIEQIVEVLDNPRDKDFRLTH  423

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
             L K+H++   VH    T P                              + ++F   K 
Sbjct  424  HL-KAHLK---VHPNSKTSP-----------------------------TRILVFALYKK  450

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
            +   LE Y I++ G        ++   LHGD     R + LE FK G    L+ TDVAAR
Sbjct  451  EAQRLE-YTIRRAG--------YAVGALHGDMTQEARFKALEAFKTGQQNVLVATDVAAR  501

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            G+DI  V  VINVT P   +++VHR GR GRA + G A++    E
Sbjct  502  GLDIPDVGLVINVTFPLTTEDFVHRCGRTGRAGKTGKAVTFFTGE  546


 Score = 42.4 bits (98),  Expect = 0.016, Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 33/54 (61%), Gaps = 1/54 (2%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGK  78
            PT IQA S P +L   DV+  AETGSGKT AF +P I ++ + L      KKG+
Sbjct  196  PTPIQACSWPALLSKKDVVGIAETGSGKTLAFGVPGINLLSQ-LPPVTGSKKGR  248


>sp|B9XXL6|RHPA_HELP8 DEAD-box ATP-dependent RNA helicase RhpA 
OS=Helicobacter pylori (strain B128) OX=544406 GN=rhpA PE=1 
SV=1
Length=492

 Score = 137 bits (344),  Expect = 5e-33, Method: Compositional matrix adjust.
 Identities = 93/333 (28%), Positives = 163/333 (49%), Gaps = 59/333 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+RELA Q  + I +  K+    + + + + GG + + Q   ++    +++ TP
Sbjct  89   EALVITPTRELAMQISDEIFKLGKHT---RTKTVCVYGGQSVKKQCEFIKKNPQVMIATP  145

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GRL D +   +++    + +VLDE+D +L  G+ D I  + + +P         Q+++ S
Sbjct  146  GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPS------EAQILLFS  199

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+    +K+L++KI+  P  + +      P  + +  +     T R +  +   H R  
Sbjct  200  ATMPE-PIKRLADKILENPIKIHI-----APSNITNTDI-----TQRFY--VINEHER--  244

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                              +EAI        +R +      ++I+F RTK + D L Q+  
Sbjct  245  ------------------AEAI--------MRLLDTQAPKKSIVFTRTKKEADELHQFLA  278

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
             +          +    LHGD    +R+ ++  FKK D   L+ TDVA+RG+DI GV +V
Sbjct  279  SKN---------YKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISGVSHV  329

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
             N  LP   ++Y+HRIGR GRA + G+AI+LV 
Sbjct  330  FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVT  362


 Score = 56.6 bits (135),  Expect = 5e-07, Method: Compositional matrix adjust.
 Identities = 23/59 (39%), Positives = 42/59 (71%), Gaps = 0/59 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
           +F+++G+   + ++V E  +  P+ IQ ++IP +L G DV+  A+TG+GKT AF++P+I
Sbjct  21  SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPII  79


>sp|Q0CXD0|IF4A_ASPTN ATP-dependent RNA helicase eIF4A OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=tif1 
PE=3 SV=2
Length=396

 Score = 135 bits (339),  Expect = 5e-33, Method: Compositional matrix adjust.
 Identities = 110/367 (30%), Positives = 172/367 (47%), Gaps = 65/367 (18%)

Query  281  KFLPN--APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            K  PN  A +ALIV P+RELA+Q    +     +++   +     IGG A RD +  L+ 
Sbjct  84   KIDPNLKACQALIVAPTRELAQQIQKVVVAIGDFMN---INCHACIGGTAIRDDMKALQE  140

Query  339  GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
            G  IVVGTPGR+ D++    L   Q++  +LDEAD +LS+G+++ I  +   +PQ T   
Sbjct  141  GPPIVVGTPGRIQDMIQRRVLKTDQMKLFILDEADEMLSRGFTEQIYDIFQLLPQAT---  197

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER  458
               QV++ SAT+   DV +++ K M  P  + +K ++   + +    + V          
Sbjct  198  ---QVVLLSATMPQ-DVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVE---------  244

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
                                    E W   +  L   Y    I      QA+IFC T+  
Sbjct  245  -----------------------KEEWK--LDTLSDLYETVTIT-----QAVIFCNTRRK  274

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
             D L                 F+   +HGD +  +R   ++ F+ G  R LI TD+ ARG
Sbjct  275  VDWLTDKL---------TARDFTVSAMHGDMEQSQRDIIMKEFRSGSSRVLIATDLLARG  325

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGC  638
            ID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V  +  ++   +     +  
Sbjct  326  IDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREI-----EQF  380

Query  639  YNTRLKE  645
            Y+T+++E
Sbjct  381  YSTQIEE  387


 Score = 42.0 bits (97),  Expect = 0.018, Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 0/67 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +F  M +  E+ + V    +  P+ IQ  +I  I+ G DV+  A++G+GKT  FSI  +Q
Sbjct  24  SFDSMELKAELLRGVYAYGFERPSAIQQRAIMPIIKGNDVIAQAQSGTGKTATFSISALQ  83

Query  63  IVYETLK  69
            +   LK
Sbjct  84  KIDPNLK  90


>sp|Q6GVM6|DDX3Y_PANTR ATP-dependent RNA helicase DDX3Y OS=Pan 
troglodytes OX=9598 GN=DDX3Y PE=2 SV=1
Length=660

 Score = 139 bits (349),  Expect = 5e-33, Method: Compositional matrix adjust.
 Identities = 96/333 (29%), Positives = 155/333 (47%), Gaps = 56/333 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P +L++ P+RELA Q     ++F       ++R  ++ GG     Q+  LE G  ++V T
Sbjct  265  PISLVLAPTRELAVQIYEEARKFSY---RSRVRPCVVYGGADIGQQIRDLERGCHLLVAT  321

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL D++  GK+ L   ++LVLDEAD +L  G+   I R+  Q   +   G R   ++ 
Sbjct  322  PGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-DTMPPKGVR-HTMMF  379

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT               FP  + +   D + + +   V  V   ++ + +++       
Sbjct  380  SAT---------------FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKV-------  417

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ-AIIFCRTKIDCDNLEQY  525
                             +W E +   K  + +  +     D   ++F  TK   D+LE +
Sbjct  418  -----------------VWVEDLD--KRSFLLDILGAAGTDSLTLVFVETKKGADSLEDF  458

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
               +G         ++C  +HGDR   +R++ L +F+ G    L+ T VAARG+DI  V 
Sbjct  459  LYHEG---------YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVR  509

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            +VIN  LP + + YVHRIGR GR   +GLA S 
Sbjct  510  HVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF  542


 Score = 47.8 bits (112),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 46/81 (57%), Gaps = 6/81 (7%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F ++ +   I   ++   +  PT +Q  +IP+I G  D++  A+TGSGKT AF +P++  
Sbjct  180  FGDIDMGEIIMGNIQLTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQ  239

Query  64   VY-----ETLKDQQE-GKKGK  78
            +Y     E LK  +E G+ G+
Sbjct  240  IYTDGPGEALKAVKENGRYGR  260


>sp|Q54QS3|DDX3_DICDI Probable ATP-dependent RNA helicase ddx3 
OS=Dictyostelium discoideum OX=44689 GN=ddx3 PE=3 SV=1
Length=712

 Score = 139 bits (350),  Expect = 6e-33, Method: Compositional matrix adjust.
 Identities = 106/342 (31%), Positives = 164/342 (48%), Gaps = 59/342 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+AL++ P+RELA+Q  +   +F        +  ++I GG     Q++ L+ G DI+V T
Sbjct  331  PRALVLAPTRELAQQIFDEANKFSY---GSPVSSVVIYGGAEVFHQINELDRGCDILVAT  387

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR-LQVIV  405
             GRL DL+  G+++LS++++LVLDEAD +L  G+   I ++   I +    G R  Q ++
Sbjct  388  TGRLVDLLMRGRVSLSKIKYLVLDEADRMLDMGFEPQIRQI---ISEFDMPGCRDRQTLM  444

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT     ++ L+   ++   ++ LK             V V   T  + +R+   ++ 
Sbjct  445  FSATFPK-QIQNLAADFLY--NYIFLK-------------VGVVGTTQNITQRI--EYVV  486

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD-QAIIFCRTKIDCDNLEQ  524
             +D                        K  Y +  +   K D   +IF  TK  CD L  
Sbjct  487  EED------------------------KNSYLLDYLSGLKSDGLCLIFVETKRSCDTL-T  521

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
            YF+ Q          F   C+HGD    ER+  L+ F+     FL+ TD+A+RG+ I  V
Sbjct  522  YFLNQ--------RNFPTTCIHGDLTQPERENALQSFRSFATPFLVATDIASRGLHIGNV  573

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
              VIN  LP +   YVHRIGR GRA + GLAIS    + + V
Sbjct  574  NLVINFDLPTDIHIYVHRIGRTGRAGKKGLAISFFNEKNKPV  615


 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 37/61 (61%), Gaps = 0/61 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F+++ +   +   ++   +  PT +Q  ++P+IL   D++  A+TGSGKT AF  P+
Sbjct  246  LNSFADVDLGDVLLGNIKHAKYTKPTPVQKSALPIILKNRDLMACAQTGSGKTAAFLFPI  305

Query  61   I  61
            I
Sbjct  306  I  306


>sp|A3Q9R3|RHLB_SHELP ATP-dependent RNA helicase RhlB OS=Shewanella 
loihica (strain ATCC BAA-1088 / PV-4) OX=323850 GN=rhlB 
PE=3 SV=1
Length=435

 Score = 135 bits (341),  Expect = 6e-33, Method: Compositional matrix adjust.
 Identities = 106/339 (31%), Positives = 165/339 (49%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+A+++ P+RELA Q   + +   K+     L+  ++ GG +   Q  VL+ GVDI++
Sbjct  83   NQPRAIVMAPTRELAIQIAKDGELLAKHTG---LKVGIVYGGESYEVQRKVLDKGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GR+ D V  G +NLS ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRIIDYVRQGVINLSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAN---ERLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLK-GEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
              SATL S  V++L+   M+ P  V++   E +  +    +  P      RL   L +  
Sbjct  197  F-SATL-SMKVQELAYDHMNDPEKVEIAPSEKTSKNITEEIFYPSMEDKMRLLLTLIE--  252

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                               E W E                    +AI+F  TK  C+NL 
Sbjct  253  -------------------EDWPE--------------------KAIVFSNTKHSCENLW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +        +  GH+     L GD    +R + LE+F KG++  L+ TDVAARG+ I  
Sbjct  274  AHL-------EGDGHRVGL--LTGDVPQKKRIRILEQFTKGELDILVATDVAARGLHISD  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA + G+++S    E
Sbjct  325  VSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFACEE  363


 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 23/55 (42%), Positives = 35/55 (64%), Gaps = 0/55 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSI  58
           F++  + PEI QA+ E  +   T IQA S+P++L   D+   A+TG+GKT AF +
Sbjct  11  FADFSLHPEIQQALVESGFEYCTPIQALSLPILLEHKDIAGQAQTGTGKTLAFLV  65


>sp|Q5B948|IF4A_EMENI ATP-dependent RNA helicase eIF4A OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / 
NRRL 194 / M139) OX=227321 GN=tif1 PE=3 SV=2
Length=398

 Score = 135 bits (339),  Expect = 6e-33, Method: Compositional matrix adjust.
 Identities = 110/367 (30%), Positives = 173/367 (47%), Gaps = 65/367 (18%)

Query  281  KFLPN--APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            K  PN  A +ALIV P+RELA+Q    +     +++   ++    IGG A RD ++ L  
Sbjct  86   KLDPNVKACQALIVAPTRELAQQIQKVVIAIGDFMN---IQCHACIGGTAVRDDMNALRE  142

Query  339  GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
            G  IVVGTPGR+ D++    L   Q++  +LDEAD +LS+G+++ I  +   +PQ T   
Sbjct  143  GPQIVVGTPGRIHDMIQRRVLKTDQMKMFILDEADEMLSRGFTEQIYDIFQLLPQST---  199

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER  458
               QV++ SAT+   DV +++ K M  P  + +K ++   + +    + V          
Sbjct  200  ---QVVLLSATMPQ-DVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVE---------  246

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
                                    E W   +  L   Y    I      QA+IFC T+  
Sbjct  247  -----------------------KEEWK--LDTLSDLYETVTIT-----QAVIFCNTRRK  276

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
             D L                 F+   +HGD +  +R   ++ F+ G  R LI TD+ ARG
Sbjct  277  VDWLTDKL---------TARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARG  327

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGC  638
            ID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V  +  ++   +     +  
Sbjct  328  IDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREI-----EQF  382

Query  639  YNTRLKE  645
            Y+T+++E
Sbjct  383  YSTQIEE  389


 Score = 43.9 bits (102),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 22/60 (37%), Positives = 35/60 (58%), Gaps = 0/60 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +F  M + PE+ + V    +  P+ IQ  +I  I+ G DV+  A++G+GKT  FSI  +Q
Sbjct  26  SFDSMELKPELLRGVYAYGFERPSAIQQRAILPIVKGNDVIAQAQSGTGKTATFSISALQ  85


>sp|P46942|DB10_NICSY ATP-dependent RNA helicase-like protein 
DB10 OS=Nicotiana sylvestris OX=4096 PE=2 SV=1
Length=607

 Score = 138 bits (348),  Expect = 6e-33, Method: Compositional matrix adjust.
 Identities = 101/342 (30%), Positives = 156/342 (46%), Gaps = 63/342 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P  L++ P+RELA Q      +F K   + ++    + GG     QL  L  GVDIVV T
Sbjct  218  PTILVLSPTRELATQIQAEAVKFGK---SSRISCTCLYGGAPKGPQLRELSRGVDIVVAT  274

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL+D++   +++L QV +LVLDEAD +L  G+   I ++  ++P       + Q ++ 
Sbjct  275  PGRLNDILEMRRVSLGQVSYLVLDEADRMLDMGFEPQIRKIVKEVP------VQRQTLMY  328

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSV---PDTVHHVVVPVNPKTDRLWERLGKSH  463
            +AT     V+K++  ++     V++   D +        H+ V +  +  R  E++ +S 
Sbjct  329  TATWPK-GVRKIAADLLVNSVQVNIGNVDELVANKSITQHIEVVLPMEKQRRVEQILRSK  387

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                         PG+                            + IIFC TK  CD L 
Sbjct  388  ------------EPGS----------------------------KIIIFCSTKKMCDQLS  407

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
            +   +           F    +HGD+   ER   L +F+ G    L+ TDVAARG+DI  
Sbjct  408  RNLTRN----------FGAAAIHGDKSQGERDYVLSQFRAGRSPVLVATDVAARGLDIKD  457

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  VIN   P   ++YVHRIGR GRA   GLA +  + +  K
Sbjct  458  IRVVINYDFPTGIEDYVHRIGRTGRAGASGLAYTFFSDQDSK  499


 Score = 48.1 bits (113),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 25/74 (34%), Positives = 41/74 (55%), Gaps = 0/74 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F   G   EI + + +  +  PT IQA+S P+ L G D++  A+TGSGKT  + +P 
Sbjct  144  LTSFEATGFPSEIVREMHQAGFSAPTPIQAQSWPIALQGRDIVAIAKTGSGKTLGYLMPA  203

Query  61   IQIVYETLKDQQEG  74
               + +  K+ Q G
Sbjct  204  FIHLQQRRKNPQLG  217


>sp|P0CQ72|FAL1_CRYNJ ATP-dependent RNA helicase FAL1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=FAL1 PE=3 SV=1
Length=396

 Score = 134 bits (338),  Expect = 6e-33, Method: Compositional matrix adjust.
 Identities = 102/358 (28%), Positives = 162/358 (45%), Gaps = 63/358 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+RELA Q    +     Y++   +     IGG +  + +  LE G  +V GTP
Sbjct  93   QALVLSPTRELAVQIQTVVLALGDYMN---VSCHACIGGTSVGEDIRKLEAGQQVVSGTP  149

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++ L+LDE+D LL++G+ D I  ++  +P  T      QV+V S
Sbjct  150  GRVFDMIRRRNLRTKDIKMLILDESDELLNKGFKDQIYDIYRYLPPAT------QVVVVS  203

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL   DV +++ K M  P  + +K ++   + +    V V                   
Sbjct  204  ATL-PHDVLEMTTKFMTDPVRILVKRDELTLEGIKQFFVAVEK-----------------  245

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W       K +          + QA+IFC T+   D L +   
Sbjct  246  ---------------EDW-------KFDTLCDLYDTLTITQAVIFCNTRRKVDWLTEKM-  282

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
                    +   F+   +HG+    ER   +  F+ G  R LI TDV ARGID+  V  V
Sbjct  283  --------REANFTVSSMHGEMVQKERDAIMAEFRGGQSRVLITTDVWARGIDVQQVSLV  334

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            IN  LP  ++NY+HRIGR GR  R G+AI+ V  +  ++   +     +  Y+T++ E
Sbjct  335  INYDLPTSRENYLHRIGRSGRFGRKGVAINFVTVDDVRILRDI-----EQYYSTQIDE  387


 Score = 42.0 bits (97),  Expect = 0.017, Method: Compositional matrix adjust.
 Identities = 20/70 (29%), Positives = 40/70 (57%), Gaps = 0/70 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  + +  ++ + +   ++  P+ IQ  +I  I+ G DV+  A++G+GKT  FSI ++Q
Sbjct  24  TFEALNLKEDLLRGIYAYNFEKPSAIQQRAIIPIIRGRDVIAQAQSGTGKTATFSISMLQ  83

Query  63  IVYETLKDQQ  72
            +   L++ Q
Sbjct  84  SIDTNLRETQ  93


>sp|P0CQ73|FAL1_CRYNB ATP-dependent RNA helicase FAL1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=FAL1 PE=3 SV=1
Length=396

 Score = 134 bits (338),  Expect = 6e-33, Method: Compositional matrix adjust.
 Identities = 102/358 (28%), Positives = 162/358 (45%), Gaps = 63/358 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+RELA Q    +     Y++   +     IGG +  + +  LE G  +V GTP
Sbjct  93   QALVLSPTRELAVQIQTVVLALGDYMN---VSCHACIGGTSVGEDIRKLEAGQQVVSGTP  149

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++ L+LDE+D LL++G+ D I  ++  +P  T      QV+V S
Sbjct  150  GRVFDMIRRRNLRTKDIKMLILDESDELLNKGFKDQIYDIYRYLPPAT------QVVVVS  203

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL   DV +++ K M  P  + +K ++   + +    V V                   
Sbjct  204  ATL-PHDVLEMTTKFMTDPVRILVKRDELTLEGIKQFFVAVEK-----------------  245

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W       K +          + QA+IFC T+   D L +   
Sbjct  246  ---------------EDW-------KFDTLCDLYDTLTITQAVIFCNTRRKVDWLTEKM-  282

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
                    +   F+   +HG+    ER   +  F+ G  R LI TDV ARGID+  V  V
Sbjct  283  --------REANFTVSSMHGEMVQKERDAIMAEFRGGQSRVLITTDVWARGIDVQQVSLV  334

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            IN  LP  ++NY+HRIGR GR  R G+AI+ V  +  ++   +     +  Y+T++ E
Sbjct  335  INYDLPTSRENYLHRIGRSGRFGRKGVAINFVTVDDVRILRDI-----EQYYSTQIDE  387


 Score = 42.0 bits (97),  Expect = 0.017, Method: Compositional matrix adjust.
 Identities = 20/70 (29%), Positives = 40/70 (57%), Gaps = 0/70 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  + +  ++ + +   ++  P+ IQ  +I  I+ G DV+  A++G+GKT  FSI ++Q
Sbjct  24  TFEALNLKEDLLRGIYAYNFEKPSAIQQRAIIPIIRGRDVIAQAQSGTGKTATFSISMLQ  83

Query  63  IVYETLKDQQ  72
            +   L++ Q
Sbjct  84  SIDTNLRETQ  93


>sp|Q54CE0|DDX17_DICDI Probable ATP-dependent RNA helicase ddx17 
OS=Dictyostelium discoideum OX=44689 GN=ddx17 PE=3 SV=1
Length=785

 Score = 139 bits (351),  Expect = 7e-33, Method: Compositional matrix adjust.
 Identities = 99/342 (29%), Positives = 164/342 (48%), Gaps = 57/342 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  L++ P+RELA Q      +F       ++    + GG +   Q++ L+ GV+IV+
Sbjct  456  DGPIVLVLAPTRELALQIQEETNKFG---GTSQISNTCVYGGASKHTQVAALKKGVEIVI  512

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D++ +GK NL +V +LVLDEAD +L  G+   I ++   I Q+  D    Q +
Sbjct  513  ATPGRLIDILESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKI---ISQIRPD---RQTL  566

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT               +P  V     D + D   H+ V                HI
Sbjct  567  MFSAT---------------WPKEVQALAHDFLTD---HIQV----------------HI  592

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
             + ++ A  N R      + + +  ++L    +V      + ++ I+F  T+   D+L++
Sbjct  593  GSTEITANHNVRQIVEVCQDFEKKERMLSFLGSV-----GRDEKVIVFAETRKGVDDLQR  647

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
                 G         F  + +HG++   ER   L +FK G V  +I TDVA+RG+DI  +
Sbjct  648  VLQFSG---------FKSIGIHGNKSQPERDFVLSQFKNGMVPIMIATDVASRGLDIKDI  698

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
             YV+N   P+  + Y+HRIGR  RA   G++ SL+ T+  ++
Sbjct  699  KYVVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTDNARL  740


 Score = 40.8 bits (94),  Expect = 0.053, Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 27/37 (73%), Gaps = 0/37 (0%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            PT IQ+++ P+ L G D++  A+TGSGKT AF +P I
Sbjct  407  PTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSI  443


>sp|A1SAL1|RHLB_SHEAM ATP-dependent RNA helicase RhlB OS=Shewanella 
amazonensis (strain ATCC BAA-1098 / SB2B) OX=326297 GN=rhlB 
PE=3 SV=1
Length=439

 Score = 135 bits (341),  Expect = 7e-33, Method: Compositional matrix adjust.
 Identities = 106/338 (31%), Positives = 167/338 (49%), Gaps = 57/338 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+A+++ P+RELA Q   +     K+     L+  ++ GG     Q  VL+ GVD+++
Sbjct  83   NQPRAIVMAPTRELAIQIAKDATLLSKH---SGLKVGIVYGGEGYEAQRKVLDKGVDVLI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GR+ D V  G +NL  ++ +VLDEAD +   G+   I  + N++P      +RL ++
Sbjct  140  GTTGRIIDYVRQGVINLGAIQAVVLDEADRMFDLGFIKDIRFLFNRMPGAK---ERLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
              SATL S  V++L+   M+ P  V++  E+               KT R          
Sbjct  197  F-SATL-SMKVQELAYDHMNDPVKVEIAPEE---------------KTSR----------  229

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                     N +     P M  + +K+L        I+E   ++AI+F  TK  C+NL  
Sbjct  230  ---------NIKEEIFYPSM-EDKLKLLHS-----LIEEDWPEKAIVFANTKYQCENLWA  274

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
                     +  GH+     L GD    +R + LE+F + ++  L+ TDVAARG+ I  V
Sbjct  275  SL-------EADGHRVGL--LTGDVPQKKRLKILEQFTQSELDILVATDVAARGLHISDV  325

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             +V N  LPD+ ++YVHRIGR GRA + G+++S    E
Sbjct  326  SHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFACEE  363


 Score = 40.0 bits (92),  Expect = 0.064, Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 35/55 (64%), Gaps = 0/55 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSI  58
           F+++ +  E+ QA+ E  +   T IQA S+P++L   D+   A+TG+GKT AF +
Sbjct  11  FADLPLCDEVKQALNENGFEHCTPIQALSLPVLLEKKDIAGQAQTGTGKTLAFLV  65


>sp|B6EPA4|RHLB_ALISL ATP-dependent RNA helicase RhlB OS=Aliivibrio 
salmonicida (strain LFI1238) OX=316275 GN=rhlB PE=3 SV=1
Length=434

 Score = 135 bits (340),  Expect = 7e-33, Method: Compositional matrix adjust.
 Identities = 110/336 (33%), Positives = 167/336 (50%), Gaps = 57/336 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+A+I+ P+RELA Q  N+ +     I +  L+  L  GG     Q  V+E GVDI++GT
Sbjct  85   PRAIIMAPTRELAIQIYNDAESL---IASTGLKAALAYGGERYEKQQKVIEAGVDILIGT  141

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
             GR+ D    G+++   ++ +VLDEAD +   G+   I  +  ++P   +  +RL ++  
Sbjct  142  TGRIIDFYKQGQIDFKAIQVVVLDEADRMFDLGFIKDIRFVFRRMP---APAERLNMLF-  197

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SATL S+ V++L+ + M  P                HVVV  + KT          H+ T
Sbjct  198  SATL-SYRVQELAFEHMQEP---------------EHVVVEPDQKT---------GHLIT  232

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
            +++    N              + +L+       I+E   D+AIIF  TK  C+ +  + 
Sbjct  233  EELFYPSN-----------DHKMALLQT-----LIEEEWPDRAIIFANTKHKCELVWGHL  276

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                   DK  H+     L GD    +R++ LE F KG+V  L+ TDVAARG+ I  V +
Sbjct  277  -----AADK--HRVGL--LTGDVPQKKRERILEEFTKGEVDILVATDVAARGLHIPQVTH  327

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V N  LP+E ++YVHRIGR GRA   G +IS    E
Sbjct  328  VFNFDLPNEAEDYVHRIGRTGRAGESGNSISFACEE  363


 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 19/53 (36%), Positives = 36/53 (68%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           F+++G+ P++   +    ++  T IQA+++P++L G D+   A+TG+GKT AF
Sbjct  11  FADLGLEPQVLDGLNAKGFINCTPIQAKALPVLLAGQDIAGQAQTGTGKTLAF  63


>sp|Q49Z29|CSHA_STAS1 DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus saprophyticus subsp. saprophyticus (strain 
ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 
GN=cshA PE=3 SV=1
Length=506

 Score = 137 bits (344),  Expect = 7e-33, Method: Compositional matrix adjust.
 Identities = 102/334 (31%), Positives = 161/334 (48%), Gaps = 62/334 (19%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            ++LI+ P+RELA Q   ++K F K      ++ + + GG+    Q+  L+ G  IVVGTP
Sbjct  71   QSLILAPTRELAMQVAESLKAFAK---GQNIQVVTVFGGMPIDRQIKALKKGPQIVVGTP  127

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D ++   L  + +  L+LDEAD +++ G+ D +  + ++IP      ++ Q ++ S
Sbjct  128  GRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMKFIMDKIP-----AEQRQTMLFS  182

Query  408  ATLHSFDVKKLSEKIMHFPTWVD-LKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSHIR  465
            AT+    ++ L ++ M  P  V  +  E S P    ++ +V    K D     L      
Sbjct  183  ATMPKA-IQTLVQQFMKSPVIVKTMNNEMSDPQIEEYYTIVKELEKFDTFTSFL------  235

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
              DVH           PE+                        AI+F RTK   D L   
Sbjct  236  --DVH----------QPEL------------------------AIVFGRTKRRVDELTSA  259

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
             I +G         +    LHGD    +R + L++FK   +  L+ TDVAARG+DI GV 
Sbjct  260  LISKG---------YKAEGLHGDITQAKRLEVLKKFKNDQLDILVATDVAARGLDISGVS  310

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +V N  +P + ++Y HRIGR GRA + G+AI+ V
Sbjct  311  HVYNFDIPQDTESYTHRIGRTGRAGKKGVAITFV  344


 Score = 64.7 bits (156),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 45/66 (68%), Gaps = 0/66 (0%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           M  F E+G+  ++A+ ++ M +   T IQ ESIPL L G DVL  A+TG+GKTGAF IP+
Sbjct  1   MQNFKELGISDKMAETLQSMGFNEATPIQKESIPLALEGKDVLGQAQTGTGKTGAFGIPL  60

Query  61  IQIVYE  66
           I+ V +
Sbjct  61  IEKVAD  66


>sp|P41376|IF4A1_ARATH Eukaryotic initiation factor 4A-1 OS=Arabidopsis 
thaliana OX=3702 GN=EIF4A1 PE=1 SV=1
Length=412

 Score = 135 bits (339),  Expect = 8e-33, Method: Compositional matrix adjust.
 Identities = 112/415 (27%), Positives = 185/415 (45%), Gaps = 75/415 (18%)

Query  240  FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQ--------VTQTKFLPNAPKALI  291
            + +G E+     + G V   K  D  +++   SG  +        + Q  F     +AL+
Sbjct  55   YAYGFEKPSAIQQRGIVPFCKGLD--VIQQAQSGTGKTATFCSGVLQQLDFSLIQCQALV  112

Query  292  VEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLD  351
            + P+RELA+Q    ++    Y+    ++    +GG + R+   +L+ GV +VVGTPGR+ 
Sbjct  113  LAPTRELAQQIEKVMRALGDYL---GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVF  169

Query  352  DLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLH  411
            D++    L    ++  VLDEAD +LS+G+ D I  +   +P       ++QV V SAT+ 
Sbjct  170  DMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLP------PKIQVGVFSATMP  223

Query  412  SFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHA  471
              +  +++ K M  P  + +K ++   + +    V V                       
Sbjct  224  P-EALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVE----------------------  260

Query  472  KDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGG  531
                       E W   ++ L   Y   AI      Q++IF  T+   D L         
Sbjct  261  ----------KEEWK--LETLCDLYETLAIT-----QSVIFVNTRRKVDWL---------  294

Query  532  GPDK-KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINV  590
              DK +    +    HGD   + R   +  F+ G  R LI TD+ ARGID+  V  VIN 
Sbjct  295  -TDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINF  353

Query  591  TLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
             LP + +NY+HRIGR GR  R G+AI+ V  + E++ + +     +  YN  ++E
Sbjct  354  DLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI-----QKFYNVVVEE  403


 Score = 33.9 bits (76),  Expect = 5.8, Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 0/60 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +F  MG+   + + +    +  P+ IQ   I     G DV+  A++G+GKT  F   V+Q
Sbjct  40  SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQ  99


>sp|P41379|IF4A2_NICPL Eukaryotic initiation factor 4A-2 OS=Nicotiana 
plumbaginifolia OX=4092 PE=2 SV=1
Length=413

 Score = 135 bits (339),  Expect = 8e-33, Method: Compositional matrix adjust.
 Identities = 102/359 (28%), Positives = 169/359 (47%), Gaps = 65/359 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+RELA+Q    ++    Y+    ++    +GG + R+   +L++GV +VVGTP
Sbjct  110  QALVLAPTRELAQQIEKVMRALGDYL---GVKVHACVGGTSVREDQRILQSGVHVVVGTP  166

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++  VLDEAD +LS+G+ D I  +   +P       ++QV V S
Sbjct  167  GRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLP------PKIQVGVFS  220

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+   +  +++ K M+ P  + +K ++   + +    V V+                  
Sbjct  221  ATMPP-EALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVD------------------  261

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W   ++ L   Y   AI      Q++IF  T+   D L     
Sbjct  262  --------------KEEWK--LETLCDLYETLAIT-----QSVIFVNTRRKVDWL-----  295

Query  528  QQGGGPDK-KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                  DK +    +    HGD   + R   +  F+ G  R LI TD+ ARGID+  V  
Sbjct  296  -----TDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL  350

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            VIN  LP + +NY+HRIGR GR  R G+AI+ V  + E++ + +     +  YN  ++E
Sbjct  351  VINYDLPTQPENYLHRIGRSGRFGRKGVAINSVTKDDERMLFDI-----QKFYNVVIEE  404


 Score = 33.9 bits (76),  Expect = 6.0, Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 0/60 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +F  MG+   + + +    +  P+ IQ   I     G DV+  A++G+GKT  F   V+Q
Sbjct  41  SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQ  100


>sp|A1CH78|DED1_ASPCL ATP-dependent RNA helicase ded1 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=ded1 PE=3 SV=1
Length=681

 Score = 138 bits (348),  Expect = 8e-33, Method: Compositional matrix adjust.
 Identities = 109/364 (30%), Positives = 163/364 (45%), Gaps = 62/364 (17%)

Query  257  ALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNP  316
            A  K P    V +Q SG  Q++  +     P +LI+ P+REL  Q  +  ++F       
Sbjct  251  AFQKGPSA--VPAQASG--QMSYGRQRKAYPTSLILAPTRELVSQIFDEARKFAY---RS  303

Query  317  KLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL  376
             +R  ++ GG     QL  +E G D++V TPGRL DL+  G+++L  + +LVLDEAD +L
Sbjct  304  WVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNINYLVLDEADRML  363

Query  377  SQGYSDFINRM--HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE  434
              G+   I R+     +P V       Q ++ SAT               FP  + +   
Sbjct  364  DMGFEPQIRRIVEGEDMPSVNER----QTLMFSAT---------------FPRDIQMLAR  404

Query  435  DSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG  494
            D + D V   V  V   ++ + +++       +DV  +             S  + IL  
Sbjct  405  DFLKDYVFLSVGRVGSTSENITQKVEY----VEDVDKR-------------SVLLDILH-  446

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
                           +IF  TK   D L  + I Q         +F    +HGDR   ER
Sbjct  447  -------THGTSGLTLIFVETKRMADALSDFLINQ---------RFPATAIHGDRTQRER  490

Query  555  KQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGL  614
            ++ LE F+      L+ T VAARG+DI  V +VIN  LP +  +YVHRIGR GRA   G+
Sbjct  491  ERALEMFRSARCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGI  550

Query  615  AISL  618
            A + 
Sbjct  551  ATAF  554


 Score = 46.6 bits (109),  Expect = 9e-04, Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 37/64 (58%), Gaps = 0/64 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            AF+   +   +   ++   +  PT +Q  SIP+++ G D++  A+TGSGKTG F  P++ 
Sbjct  190  AFTNPPLDDHLISNIKLARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILS  249

Query  63   IVYE  66
              ++
Sbjct  250  QAFQ  253


>sp|Q40470|IF4A7_TOBAC Eukaryotic initiation factor 4A-7 OS=Nicotiana 
tabacum OX=4097 PE=2 SV=1
Length=413

 Score = 134 bits (338),  Expect = 9e-33, Method: Compositional matrix adjust.
 Identities = 103/358 (29%), Positives = 167/358 (47%), Gaps = 63/358 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+RELA+Q    ++    Y+    ++    +GG + R+   +L++GV +VVGTP
Sbjct  110  QALVLAPTRELAQQIEKVMRALGDYL---GVKVHACVGGTSVREDQRILQSGVHVVVGTP  166

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++  VLDEAD +LS+G+ D I  +   +P       ++QV V S
Sbjct  167  GRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLP------PKIQVGVFS  220

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+   +  +++ K M+ P  + +K +D   + +    V V+                  
Sbjct  221  ATMPP-EALEITRKFMNKPVRILVKRDDVTLEGIKQFYVNVD------------------  261

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W   ++ L   Y   AI      Q++IF  T+   D L     
Sbjct  262  --------------KEEWK--LETLCDLYETLAIT-----QSVIFVNTRRKVDWLTDKM-  299

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
                    + H  S    HGD   + R   +  F+ G  R LI TD+ ARGID+  V  V
Sbjct  300  ------RTRDHTVSAT--HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLV  351

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            IN  LP + +NY+HRIGR GR  R G+AI+ V  + E++   +     +  YN  ++E
Sbjct  352  INYDLPTQPENYLHRIGRSGRFGRKGVAINFVIKDDERMLSDI-----QRFYNVVIEE  404


 Score = 33.9 bits (76),  Expect = 6.2, Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 0/60 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +F  MG+   + + +    +  P+ IQ   I     G DV+  A++G+GKT  F   V+Q
Sbjct  41  SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQ  100


>sp|A1CXK7|DED1_NEOFI ATP-dependent RNA helicase ded1 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=ded1 
PE=3 SV=1
Length=676

 Score = 138 bits (348),  Expect = 9e-33, Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 151/340 (44%), Gaps = 70/340 (21%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P +LI+ P+REL  Q  +  ++F        +R  ++ GG     QL  +E G D++V T
Sbjct  278  PTSLILAPTRELVSQIFDEARKFAY---RSWVRPCVVYGGADIGSQLRQIERGCDLLVAT  334

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM--HNQIPQVTSDGKRLQVI  404
            PGRL DL+  G+++L  +++LVLDEAD +L  G+   I R+     +P V       Q +
Sbjct  335  PGRLVDLIERGRISLVNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPNVNER----QTL  390

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL-----  459
            + SAT               FP  + +   D + D V   V  V   ++ + +++     
Sbjct  391  MFSAT---------------FPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVED  435

Query  460  -GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
              K  +  D +H    +                                  +IF  TK  
Sbjct  436  HDKRSVLLDILHTHGTS-------------------------------GLTLIFVETKRM  464

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
             D L  + + Q         +F    +HGDR   ER++ LE F+ G    L+ T VAARG
Sbjct  465  ADALSDFLLNQ---------RFPATAIHGDRTQRERERALEMFRSGRCPILVATAVAARG  515

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            +DI  V +VIN  LP +  +YVHRIGR GRA   G+A + 
Sbjct  516  LDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAF  555


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 0/65 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            AF+   +   +   ++   +  PT +Q  SIP+++ G D++  A+TGSGKTG F  P++ 
Sbjct  191  AFTNPPLDDHLISNIKLARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILS  250

Query  63   IVYET  67
              ++T
Sbjct  251  QAFQT  255


>sp|Q501J6|DDX17_MOUSE Probable ATP-dependent RNA helicase DDX17 
OS=Mus musculus OX=10090 GN=Ddx17 PE=1 SV=1
Length=650

 Score = 138 bits (347),  Expect = 9e-33, Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 161/334 (48%), Gaps = 55/334 (16%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  L++ P+RELA+Q       + K     +L+   I GG     Q+  LE GV+I +
Sbjct  164  DGPICLVLAPTRELAQQVQQVADDYGKC---SRLKSTCIYGGAPKGPQIRDLERGVEICI  220

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D + +GK NL +  +LVLDEAD +L  G+   I ++ +QI          Q +
Sbjct  221  ATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI------RPDRQTL  274

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT    +V++L+E  +   T +++    ++  + +H ++ +    D   E       
Sbjct  275  MWSATWPK-EVRQLAEDFLRDYTQINV---GNLELSANHNILQI---VDVCME-------  320

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                   KD+               K+++    + A KE+K    IIF  TK  CD+L +
Sbjct  321  -----SEKDH---------------KLIQLMEEIMAEKENK---TIIFVETKRRCDDLTR  357

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
               + G         +  +C+HGD+   ER   L  F+ G    LI TDVA+RG+D+  V
Sbjct  358  RMRRDG---------WPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDV  408

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
             +VIN   P+  ++YVHRIGR  R+   G A + 
Sbjct  409  KFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTF  442


 Score = 41.6 bits (96),  Expect = 0.030, Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 25/37 (68%), Gaps = 0/37 (0%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            PT IQ +  PL L G D++  A+TGSGKT A+ +P I
Sbjct  115  PTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAI  151


>sp|Q40465|IF411_TOBAC Eukaryotic initiation factor 4A-11 OS=Nicotiana 
tabacum OX=4097 PE=2 SV=1
Length=413

 Score = 134 bits (338),  Expect = 9e-33, Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 169/359 (47%), Gaps = 65/359 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+RELA+Q    ++    Y+    ++    +GG + R+   +L++GV +VVGTP
Sbjct  110  QALVLAPTRELAQQIEKVMRALGDYL---GVKVHACVGGTSVREDQRILQSGVHVVVGTP  166

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++  VLDEAD +LS+G+ D I  +   +P       ++QV V S
Sbjct  167  GRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLP------PKIQVGVFS  220

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+   +  +++ K M+ P  + +K ++   + +    V V+                  
Sbjct  221  ATMPP-EALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVD------------------  261

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W   ++ L   Y   AI      Q++IF  T+   D L     
Sbjct  262  --------------KEEWK--LETLCDLYETLAIT-----QSVIFVNTRRKVDWL-----  295

Query  528  QQGGGPDK-KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                  DK +G   +    HGD   + R   +  F+ G  R LI TD+ ARGID+  V  
Sbjct  296  -----TDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL  350

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            VIN  LP + +NY+HRIG  GR  R G++I+ V  + E++ + +     +  YN  ++E
Sbjct  351  VINYDLPTQPENYLHRIGHSGRFGRKGVSINFVTKDDERMLFDI-----QKFYNVVIEE  404


 Score = 33.5 bits (75),  Expect = 7.8, Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 0/60 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +F  MG+   + + +    +  P+ IQ   I     G DV+  A++G+GKT  F   ++Q
Sbjct  41  SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ  100


>sp|Q54TJ4|DDX27_DICDI Probable ATP-dependent RNA helicase ddx27 
OS=Dictyostelium discoideum OX=44689 GN=ddx27 PE=3 SV=1
Length=783

 Score = 139 bits (349),  Expect = 9e-33, Method: Compositional matrix adjust.
 Identities = 109/380 (29%), Positives = 172/380 (45%), Gaps = 63/380 (17%)

Query  286  APKALIVEPSRELAEQ---TLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDI  342
            A + LI+ P+RELA Q    + N+ QF        +   LI+GG++ + Q   L    D+
Sbjct  261  AIRVLILLPTRELALQCQSVMENLAQF------SNITSCLIVGGLSNKAQEVELRKSPDV  314

Query  343  VVGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL  401
            V+ TPGRL D L++   + L  +  L+LDEAD LL  G+ D IN++    P         
Sbjct  315  VIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIVESCPT------NR  368

Query  402  QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK  461
            Q ++ SATL+  +VK L++  +  P  V +     V  T+    V + P+          
Sbjct  369  QTMLFSATLND-EVKTLAKLSLQQPIRVQVDALMQVTSTLEQEFVKIKPQ----------  417

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
                    H  D  RP      + S   ++                  IIFCR+K +   
Sbjct  418  --------HLSD--RPAI----LLSLCTRVFN------------QGGTIIFCRSKKEVHR  451

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            L   F    G  D K  +     LHG+    +R  +L++F+ G V +L+ +DVA+RG+DI
Sbjct  452  LRIIF----GLSDLKAAE-----LHGNLSQEQRFDSLQQFRDGQVNYLLASDVASRGLDI  502

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
             GV  VIN  +P+   NY+HR+GR  RA   G + S +     K+   +  ++ +    +
Sbjct  503  IGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKLLKDIV-TKARNKAKS  561

Query  642  RLKEDGGCTIWYNEMQLLSE  661
            R         W N ++ L+E
Sbjct  562  RSVSQDNVNFWRNRIEELTE  581


 Score = 61.2 bits (147),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 27/62 (44%), Positives = 43/62 (69%), Gaps = 0/62 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E+ +   + +AV+++ +  PT IQA++IPL L G D+L +A TGSGKT AF +PV
Sbjct  189  LPTFEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPV  248

Query  61   IQ  62
            ++
Sbjct  249  LE  250


>sp|A7TJ36|DBP3_VANPO ATP-dependent RNA helicase DBP3 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=DBP3 PE=3 SV=1
Length=530

 Score = 136 bits (343),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 110/345 (32%), Positives = 160/345 (46%), Gaps = 61/345 (18%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N  + LI+ P+RELA Q  +N+       D   L    + GGV   +Q + L+    +VV
Sbjct  188  NGIQVLIISPTRELASQIYDNLVIL---TDKVGLECCCVYGGVPKDEQRTQLKRS-QVVV  243

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL DL+  G  NLS V +LVLDEAD +L +G+ + I    N I +  S G+  Q +
Sbjct  244  ATPGRLLDLIQEGAANLSNVNYLVLDEADRMLEKGFEEDI---KNIIRETKSTGR--QTL  298

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGED--SVPDTVHHVVVPVNP--KTDRLWERLG  460
            + +AT    +V++L+   M+ P  V +   D  S    +  +V  ++P  K  +L E L 
Sbjct  299  MFTATWPK-EVRELASTFMNSPIKVSIGNTDELSANKRITQIVEVIDPFKKERKLLELLK  357

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
            K    +                                      K D+ +IF   K +  
Sbjct  358  KYQSGS-------------------------------------KKDDKVLIFALYKKEAA  380

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             +E+     G         +    +HGD    +R   L+ FK G    L+ TDVAARG+D
Sbjct  381  RVERNLNYNG---------YKVSAIHGDLSQQQRTNALDEFKTGRSSILLATDVAARGLD  431

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            I  V  VIN+T P   ++YVHRIGR GRA + G A +L  TE+EK
Sbjct  432  IPNVKTVINLTFPLTVEDYVHRIGRTGRAGKTGTAHTLF-TEQEK  475


 Score = 47.8 bits (112),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 27/53 (51%), Positives = 32/53 (60%), Gaps = 1/53 (2%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKG  77
            PT IQA S P +L G DV+  AETGSGKT AF +P I  +  T    + GK G
Sbjct  138  PTPIQAVSWPYLLAGKDVIGVAETGSGKTFAFGVPAINNIL-TKSGSKPGKNG  189


>sp|Q9Z6C9|CSHA_LIMRT ATP-dependent RNA helicase CshA OS=Limosilactobacillus 
reuteri OX=1598 GN=cshA PE=3 SV=1
Length=497

 Score = 136 bits (342),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 104/346 (30%), Positives = 167/346 (48%), Gaps = 61/346 (18%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            PN  +A+I+ P+RELA QT   + +  K   +  +R  ++ GG   R Q+  L+    I+
Sbjct  68   PNI-QAIIISPTRELAIQTQEELYRLGK---DKHVRVQVVYGGADIRRQIKSLKQHPQIL  123

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            VGTPGRL D ++   + L  ++ LVLDEAD +L+ G+ + I  +  + P    D +  Q 
Sbjct  124  VGTPGRLRDHINRHTVKLDHIKTLVLDEADEMLNMGFLEDIESIIKETP----DDR--QT  177

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            ++ SAT+   ++K++  + M  P  V +K ++   D V           D+ +       
Sbjct  178  LLFSATMPP-EIKRIGVQFMSDPETVRIKAKELTTDLV-----------DQYY-------  218

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                 V A+D                   K +   R I     D  I+F RTK   D L 
Sbjct  219  -----VRARDYE-----------------KFDIMTRLIDVQDPDLTIVFGRTKRRVDELS  256

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
            +  I +G         ++   +HGD    +R + + +FK  ++  L+ TDVAARG+DI G
Sbjct  257  KGLIARG---------YNAAGIHGDLTQDKRSKIMWKFKNNELDILVATDVAARGLDISG  307

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            V +V N  +P +  +YVHRIGR GRA   G++++ V T  E  + H
Sbjct  308  VTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFV-TPNEMDYLH  352


 Score = 56.6 bits (135),  Expect = 5e-07, Method: Compositional matrix adjust.
 Identities = 25/61 (41%), Positives = 42/61 (69%), Gaps = 0/61 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           FSE+G+   + +A++   +   T IQ ++IP++L G DV+  A+TG+GKT AF +P+I+ 
Sbjct  3   FSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLEGKDVIGQAQTGTGKTAAFGLPIIEN  62

Query  64  V  64
           V
Sbjct  63  V  63


>sp|Q5HME0|CSHA_STAEQ DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) OX=176279 
GN=cshA PE=3 SV=1
Length=509

 Score = 136 bits (342),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 99/334 (30%), Positives = 162/334 (49%), Gaps = 62/334 (19%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            ++LI+ P+RELA Q    +++F K     K++ + + GG+    Q+  L+ G  IVVGTP
Sbjct  71   QSLILAPTRELAMQVAEQLREFSK---GQKVQVVTVFGGMPIERQIKALKRGPQIVVGTP  127

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D ++   L    +  L+LDEAD +++ G+ D +  + ++IP      ++ Q ++ S
Sbjct  128  GRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIP-----AEQRQTMLFS  182

Query  408  ATLHSFDVKKLSEKIMHFPTWVD-LKGEDSVPDT-VHHVVVPVNPKTDRLWERLGKSHIR  465
            AT+    +++L ++ M  P  +  +  E S P    ++ +V    K D     L      
Sbjct  183  ATMPKA-IQELVQQFMKAPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFL------  235

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
              DVH           PE+                        AI+F RTK   D L   
Sbjct  236  --DVH----------QPEL------------------------AIVFGRTKRRVDELTSA  259

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
             + +G         +    LHGD    +R + L++FK   +  L+ TDVAARG+DI GV 
Sbjct  260  LLSKG---------YKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDISGVS  310

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +V N  +P + ++Y HRIGR GRA + G+A++ V
Sbjct  311  HVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFV  344


 Score = 64.7 bits (156),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 42/64 (66%), Gaps = 0/64 (0%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           M  F E+G+  +  Q +E M +  PT IQ +SIP  L G D+L  A+TG+GKTGAF IP+
Sbjct  1   MQNFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPL  60

Query  61  IQIV  64
           I+ V
Sbjct  61  IEKV  64


>sp|A2QI25|DED1_ASPNC ATP-dependent RNA helicase ded1 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=ded1 PE=3 SV=1
Length=678

 Score = 138 bits (347),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 98/340 (29%), Positives = 152/340 (45%), Gaps = 70/340 (21%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P +LI+ P+REL  Q  +  ++F        +R  ++ GG     QL  +E G D++V T
Sbjct  275  PTSLILAPTRELVSQIFDEARKFAY---RSWVRPCVVYGGADIGSQLRQIERGCDLLVAT  331

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM--HNQIPQVTSDGKRLQVI  404
            PGRL DL+  G+++L  +++L+LDEAD +L  G+   I R+     +P V       Q +
Sbjct  332  PGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIRRIVEGEDMPHVNDR----QTL  387

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL-----  459
            + SAT               FP  + +   D + D V   V  V   ++ + +++     
Sbjct  388  MFSAT---------------FPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVED  432

Query  460  -GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
              K  +  D +H    +                                  +IF  TK  
Sbjct  433  HDKRSVLLDILHTHGTS-------------------------------GLTLIFVETKRM  461

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
             D+L  + + Q         +F    +HGDR   ER++ LE F+ G    L+ T VAARG
Sbjct  462  ADSLSDFLLNQ---------RFPATAIHGDRTQRERERALEMFRSGRCPILVATAVAARG  512

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            +DI  V +VIN  LP +  +YVHRIGR GRA   G+A + 
Sbjct  513  LDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAF  552


 Score = 49.3 bits (116),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 0/75 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            AF+   +   + + ++   +  PT +Q  SIP+++ G D++  A+TGSGKTG F  P++ 
Sbjct  188  AFTNPPLDDHLIENIKLAHYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILS  247

Query  63   IVYETLKDQQEGKKG  77
              Y+        + G
Sbjct  248  QAYQNGPSAAPAQAG  262


>sp|Q2NQB2|RHLB_SODGM ATP-dependent RNA helicase RhlB OS=Sodalis 
glossinidius (strain morsitans) OX=343509 GN=rhlB PE=3 SV=1
Length=415

 Score = 134 bits (338),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 162/342 (47%), Gaps = 65/342 (19%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q  ++ +   +      L+  L  GG     QL VLE GVDI+V
Sbjct  83   NQPRALIMAPTRELAVQIHSDAEPLAQATG---LKMGLAYGGDGYDKQLKVLEAGVDILV  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +N+S ++ +VLDEAD +   G+   I  +  ++P       RL ++
Sbjct  140  GTTGRLIDYTKQNYVNMSAIQVVVLDEADRMFDLGFIKDIRWLFRRMPAAAG---RLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV----VVPVNPKTDRLWERLG  460
              SATL S+ V++L+ + M+   +V++   + +  T H +      P N +  RL + L 
Sbjct  197  F-SATL-SYRVRELAFEHMNNAEYVEV---EPLQKTGHRIQEELFYPSNEEKMRLLQTL-  250

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
                                                    I+E   D+ IIF  TK  C+
Sbjct  251  ----------------------------------------IEEEWPDRCIIFANTKHRCE  270

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
            ++        G     GH+     L GD     R + LE+F +G +  L+ TDVAARG+ 
Sbjct  271  DI-------WGHLAADGHRVGL--LTGDVSQKRRLRILEKFTQGALDILVATDVAARGLH  321

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  322  IPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGCSISLACEE  363


 Score = 40.4 bits (93),  Expect = 0.049, Method: Compositional matrix adjust.
 Identities = 21/53 (40%), Positives = 31/53 (58%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P I + ++   +   T IQA ++P  L G DV   A+TG+GKT AF
Sbjct  11  FSDFALYPPIVEVLDSKGFNNCTPIQALTLPTTLAGKDVAGQAQTGTGKTLAF  63


>sp|Q2UGK3|DED1_ASPOR ATP-dependent RNA helicase ded1 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=ded1 
PE=3 SV=1
Length=675

 Score = 138 bits (347),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 153/335 (46%), Gaps = 60/335 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P +LI+ P+REL  Q  +  ++F        +R  ++ GG     QL  +E G D++V T
Sbjct  274  PTSLILAPTRELVSQIFDEARKFAY---RSWVRPCVVYGGADIGSQLRQIERGCDLLVAT  330

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM--HNQIPQVTSDGKRLQVI  404
            PGRL DL+  G+++L  +++L+LDEAD +L  G+   I R+     +P V       Q +
Sbjct  331  PGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIRRIVEGEDMPHVNDR----QTL  386

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT               FP  + +   D + D V   V  V   ++ + +++   ++
Sbjct  387  MFSAT---------------FPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKV--EYV  429

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ-AIIFCRTKIDCDNLE  523
               D                        K    +  +  H      +IF  TK   D+L 
Sbjct  430  EDHD------------------------KRSVLLDILHTHGTSGLTLIFVETKRMADSLS  465

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             + + Q         +F    +HGDR   ER++ LE F+ G    L+ T VAARG+DI  
Sbjct  466  DFLLNQ---------RFPATAIHGDRTQRERERALEMFRSGRCPILVATAVAARGLDIPN  516

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            V +VIN  LP +  +YVHRIGR GRA   G+A + 
Sbjct  517  VTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAF  551


 Score = 46.6 bits (109),  Expect = 7e-04, Method: Compositional matrix adjust.
 Identities = 18/42 (43%), Positives = 29/42 (69%), Gaps = 0/42 (0%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYE  66
            PT +Q  SIP+++ G D++  A+TGSGKTG F  P++   ++
Sbjct  209  PTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAFQ  250


>sp|O13370|DED1_SCHPO ATP-dependent RNA helicase ded1 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=ded1 
PE=1 SV=1
Length=636

 Score = 137 bits (346),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 100/335 (30%), Positives = 155/335 (46%), Gaps = 60/335 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P  LI+ P+REL  Q     ++ +K+     +R   + GG   R Q+  ++ G D++  T
Sbjct  256  PTTLILAPTRELVCQIH---EESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSAT  312

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL DL+  G+++L+ ++FLVLDEAD +L  G+           PQ+       + IV 
Sbjct  313  PGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFE----------PQI-------RHIVE  355

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
             A + S + ++       FP  + L   D + D V   V  V   ++ + +++       
Sbjct  356  GADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSENITQKV-------  408

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ---AIIFCRTKIDCDNLE  523
              VH +D+        E  S  + IL           H +      +IF  TK   D L 
Sbjct  409  --VHVEDS--------EKRSYLLDIL-----------HTLPPEGLTLIFVETKRMADTLT  447

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             Y +            F    +HGDR   ER++ LE F+ G    ++ T VA+RG+DI  
Sbjct  448  DYLLNS---------NFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPN  498

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            V +VIN  LP +  +YVHRIGR GRA   G A++ 
Sbjct  499  VTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAF  533


 Score = 47.8 bits (112),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 0/63 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+   +   + Q ++   +  PT +Q  SIP++  G D++  A+TGSGKT  F  P++ +
Sbjct  171  FTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSL  230

Query  64   VYE  66
             ++
Sbjct  231  AFD  233


>sp|A3LRW2|DBP3_PICST ATP-dependent RNA helicase DBP3 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DBP3 PE=3 SV=1
Length=526

 Score = 136 bits (343),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 104/336 (31%), Positives = 158/336 (47%), Gaps = 53/336 (16%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR  349
            L + P+RELA Q  +N+        N  ++ + + GGV   DQ+  L+N  ++VV TPGR
Sbjct  189  LCISPTRELASQIYDNLVDL---TSNTNVKCVCVYGGVPKHDQVKNLKNA-NVVVATPGR  244

Query  350  LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSAT  409
            L DL+  G +NL  V +LVLDEAD +L  G+ D I  +     +     +  Q ++ +AT
Sbjct  245  LLDLIEDGAVNLGTVDYLVLDEADRMLETGFEDAIKAIIGGTKK-----ENRQTLMFTAT  299

Query  410  LHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDV  469
                +V+KL+   M+ P  V +   D +           N +  ++ E +          
Sbjct  300  WPQ-EVRKLASTFMNQPVKVSIGDRDELA---------ANKRITQIVEVI----------  339

Query  470  HAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQ  529
                         E + +  K+L G          K D+ +IF   K +   +E      
Sbjct  340  -------------EPFDKEKKLL-GLLRQYQSGSKKNDKVLIFALYKKEATRIEGLL---  382

Query  530  GGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVIN  589
                  + + ++   +HGD    +R   L  FKKG+   L+ TDVAARG+DI  V  VIN
Sbjct  383  ------RRNSYNVAAIHGDLSQQQRTNALNSFKKGESSLLLATDVAARGLDIPNVKVVIN  436

Query  590  VTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +T P   ++YVHRIGR GRA + G A +L  TE EK
Sbjct  437  LTFPLTVEDYVHRIGRTGRAGQTGTAHTLF-TEHEK  471


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 2/61 (3%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F ++ +  +I+  V +  +  PT IQ+ + P +L G DV+  AETGSGKT AF +P 
Sbjct  117  LLSFDQIQLNSKISAVVNK--FPTPTPIQSVAWPYLLSGKDVIGVAETGSGKTFAFGVPA  174

Query  61   I  61
            I
Sbjct  175  I  175


>sp|Q5APT8|DBP3_CANAL ATP-dependent RNA helicase DBP3 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP3 
PE=3 SV=1
Length=564

 Score = 137 bits (344),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 104/336 (31%), Positives = 165/336 (49%), Gaps = 53/336 (16%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR  349
            L + P+RELA Q  +N+ +      +  +  + + GGV+  DQ+  ++   ++VV TPGR
Sbjct  227  LCISPTRELALQIYDNLIELTA---DSGVNCVAVYGGVSKDDQIRKIKTA-NVVVATPGR  282

Query  350  LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSAT  409
            L DL++ G +NL +V +LVLDEAD +L +G+ + I      I   TS+ +R Q ++ +AT
Sbjct  283  LVDLINDGAINLGKVNYLVLDEADRMLEKGFEEDIK----TIISNTSNSER-QTLMFTAT  337

Query  410  LHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDV  469
                +V++L+   M+ P  V +   D +           N +  ++ E + K        
Sbjct  338  WPK-EVRELANNFMNSPVKVTVGDRDELS---------ANKRITQVVEVINKF-------  380

Query  470  HAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQ  529
                         +   + I++L+   A     E   ++ +IF   K +   +E +    
Sbjct  381  -------------DKEKKLIQLLRKYNA----NESSDNKILIFALYKKEASRIENFL---  420

Query  530  GGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVIN  589
                  K ++FS   +HGD    +R   L  FK G    L+ TDVAARG+DI  V  VIN
Sbjct  421  ------KRNRFSVAAIHGDLSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPNVKVVIN  474

Query  590  VTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +T P   ++YVHRIGR GRA   G A +L  TE EK
Sbjct  475  LTFPLTIEDYVHRIGRTGRAGAKGTAHTLF-TEDEK  509


 Score = 49.3 bits (116),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 26/67 (39%), Positives = 38/67 (57%), Gaps = 2/67 (3%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F ++ +   I   + + D   PT IQ+ S P +L G DV+  AETGSGKT AF +P 
Sbjct  154  ILSFDQVQLTSAITSKLSKFDK--PTPIQSVSWPFLLSGKDVIGVAETGSGKTFAFGVPA  211

Query  61   IQIVYET  67
            I  +  T
Sbjct  212  INNIITT  218


>sp|Q95YF3|CGH1_CAEEL ATP-dependent RNA helicase cgh-1 OS=Caenorhabditis 
elegans OX=6239 GN=cgh-1 PE=1 SV=1
Length=430

 Score = 134 bits (338),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 97/337 (29%), Positives = 156/337 (46%), Gaps = 60/337 (18%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            A +A+++ P+RELA QT     +  K+I   +L+ ++  GG   RD +  L   V +V+ 
Sbjct  111  AIQAMVIVPTRELALQTSQICVELSKHI---QLKVMVTTGGTDLRDDIMRLNGTVHLVIA  167

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGR+ DL+  G   +   + LVLDEAD LLSQ +   ++R+ N +P      K  QV++
Sbjct  168  TPGRILDLMEKGVAKMEHCKTLVLDEADKLLSQDFQGILDRLINFLP------KERQVML  221

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT  +  V    +K MH P  ++L  E ++     +    V  K              
Sbjct  222  YSATFPN-TVTSFMQKHMHKPYEINLMEELTLLGVTQYYAF-VQEK--------------  265

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
               VH  +                            ++ +++Q+IIFC +    + L + 
Sbjct  266  -QKVHCLNT-------------------------LFRKLQINQSIIFCNSTQRVELLAKK  299

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
              + G         +SC  +H     + R +    F++G+ R L+C+D+  RGIDI  V 
Sbjct  300  ITEIG---------YSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCSDLLTRGIDIQAVN  350

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             VIN   P   + Y+HRIGR GR   +G+AI+L+  E
Sbjct  351  VVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYE  387


 Score = 49.3 bits (116),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 26/69 (38%), Positives = 39/69 (57%), Gaps = 0/69 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +  +  ++   + E  W  P+ IQ  SI + L G D+L  A+ G+GKTGA+ IPVI+ 
Sbjct  45   FEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEK  104

Query  64   VYETLKDQQ  72
            +   LK  Q
Sbjct  105  IQPALKAIQ  113


>sp|Q40468|IF415_TOBAC Eukaryotic initiation factor 4A-15 OS=Nicotiana 
tabacum OX=4097 PE=2 SV=1
Length=413

 Score = 134 bits (337),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 102/359 (28%), Positives = 167/359 (47%), Gaps = 65/359 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+RELA+Q    ++    Y+    ++    +GG + R+   +L +GV +VVGTP
Sbjct  110  QALVLAPTRELAQQIEKVMRALGDYL---GVKVTACVGGTSVREDQRILSSGVHVVVGTP  166

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++  VLDEAD +LS+G+ D I  +   +P       ++QV V S
Sbjct  167  GRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLP------PKIQVGVFS  220

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+   +  +++ K M+ P  + +K ++   + +    V V+                  
Sbjct  221  ATMPP-EALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVD------------------  261

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W   ++ L   Y   AI      Q++IF  T+   D L     
Sbjct  262  --------------KEEWK--LETLCDLYETLAIT-----QSVIFVNTRRKVDWL-----  295

Query  528  QQGGGPDK-KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                  DK +    +    HGD   + R   +  F+ G  R LI TD+ ARGID+  V  
Sbjct  296  -----TDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL  350

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            VIN  LP + +NY+HRIGR GR  R G+AI+ V  + E++   +     +  YN  ++E
Sbjct  351  VINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDI-----QRFYNVVIEE  404


 Score = 35.8 bits (81),  Expect = 1.6, Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI-  61
            +F  MG+   + + +    +  P+ IQ   I     G DV+  A++G+GKT  F   ++ 
Sbjct  41   SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ  100

Query  62   QIVYETLKDQ  71
            Q+ YE L+ Q
Sbjct  101  QLAYELLECQ  110


>sp|A8G828|RHLB_SERP5 ATP-dependent RNA helicase RhlB OS=Serratia 
proteamaculans (strain 568) OX=399741 GN=rhlB PE=3 SV=1
Length=428

 Score = 134 bits (338),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 108/339 (32%), Positives = 165/339 (49%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q  ++ +   +   +  L+  L  GG     QL VLE+GVDI+V
Sbjct  83   NQPRALIMAPTRELAVQIHSDAEALSQ---STGLKMGLAYGGDGYDKQLKVLESGVDILV  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      ++L  ++ +VLDEAD +   G+   I  +  ++P V    +RL ++
Sbjct  140  GTTGRLIDYAKQNYIDLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAVD---QRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S+ V++L+ + M+   +V+++ E      +   +  P N +  RL + L    
Sbjct  197  F-SATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+ IIF  TK  C+++ 
Sbjct  251  -------------------------------------IEEEWPDRCIIFANTKHRCEDVW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G       H+     L GD    +R + L+ F KG++  L+ TDVAARG+ I  
Sbjct  274  GHLAADG-------HRVGL--LTGDVAQKKRLRILDDFTKGNLDILVATDVAARGLHIPL  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEE  363


 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS+  + P + +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF
Sbjct  11  FSDFALHPLVLEALEKKGFQHCTPIQALALPLTLSGRDVAGQAQTGTGKTLAF  63


>sp|Q54KG1|DDX41_DICDI Probable ATP-dependent RNA helicase ddx41 
OS=Dictyostelium discoideum OX=44689 GN=ddx41 PE=1 SV=1
Length=671

 Score = 137 bits (346),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 161/341 (47%), Gaps = 67/341 (20%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYID----NPKLRELLIIGGVAARDQLSVLENGVD  341
             P  LI+ PSRELA QT + +  F   +     +P+LR LL IGG+  R+Q  + + GV 
Sbjct  298  GPFGLILCPSRELARQTYDLVNSFTNALHKNGGHPQLRTLLAIGGIDLREQEHIFKKGVH  357

Query  342  IVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL  401
            +++ TPGRL DL++  K+N    ++L LDEAD L+  G+ D I  + +          + 
Sbjct  358  MIIATPGRLLDLLNKKKINFKLCKYLGLDEADRLIDLGFEDDIRSVLDNF------TNQR  411

Query  402  QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK  461
            Q ++ SAT+         +KI  F                  +V+PV     R     G 
Sbjct  412  QTLLFSATM--------PKKIQEFARSA--------------LVLPVEVNVGRA----GA  445

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE---HKMDQAIIFCRTKID  518
            +++                     ++ ++ +K E  +  + E         +IFC  K D
Sbjct  446  ANLNV-------------------TQEVEFVKPEAKIVYLLECLQKTPPPVLIFCENKKD  486

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
             D++ +Y + +         Q   V +HGD+   ER+  ++ F++G    L+ TDVA++G
Sbjct  487  VDDIYEYLLLK---------QVEAVSIHGDKSQDERESAIKAFREGKKDVLVATDVASKG  537

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +D   + +VIN  +P E +NY+HRIGR GR    G+A + +
Sbjct  538  LDFPEIQHVINFDMPREIENYIHRIGRTGRRGNKGVATTFI  578


 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 36/66 (55%), Gaps = 0/66 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F EM +   +   + E     P+ IQ + +P+IL G D++  A TGSGKT  F++P+
Sbjct  221  ITTFKEMKIPKPVIDVLLEKGIKKPSPIQVQGLPVILSGRDMIGIAYTGSGKTLVFTLPM  280

Query  61   IQIVYE  66
            +    E
Sbjct  281  VLFALE  286


>sp|Q4WP13|DED1_ASPFU ATP-dependent RNA helicase ded1 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=ded1 PE=3 SV=1
Length=674

 Score = 137 bits (346),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 151/340 (44%), Gaps = 70/340 (21%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P +LI+ P+REL  Q  +  ++F        +R  ++ GG     QL  +E G D++V T
Sbjct  276  PTSLILAPTRELVSQIFDEARKFAY---RSWVRPCVVYGGADIGSQLRQIERGCDLLVAT  332

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM--HNQIPQVTSDGKRLQVI  404
            PGRL DL+  G+++L  +++LVLDEAD +L  G+   I R+     +P V       Q +
Sbjct  333  PGRLVDLIERGRISLVNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPNVNER----QTL  388

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL-----  459
            + SAT               FP  + +   D + D V   V  V   ++ + +++     
Sbjct  389  MFSAT---------------FPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVED  433

Query  460  -GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
              K  +  D +H    +                                  +IF  TK  
Sbjct  434  HDKRSVLLDILHTHGTS-------------------------------GLTLIFVETKRM  462

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
             D L  + + Q         +F    +HGDR   ER++ LE F+ G    L+ T VAARG
Sbjct  463  ADALSDFLLNQ---------RFPATAIHGDRTQRERERALEMFRSGRCPILVATAVAARG  513

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            +DI  V +VIN  LP +  +YVHRIGR GRA   G+A + 
Sbjct  514  LDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAF  553


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 30/43 (70%), Gaps = 0/43 (0%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYET  67
            PT +Q  SIP+++ G D++  A+TGSGKTG F  P++   ++T
Sbjct  211  PTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAFQT  253


>sp|Q92841|DDX17_HUMAN Probable ATP-dependent RNA helicase DDX17 
OS=Homo sapiens OX=9606 GN=DDX17 PE=1 SV=2
Length=729

 Score = 138 bits (347),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 161/334 (48%), Gaps = 55/334 (16%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  L++ P+RELA+Q       + K     +L+   I GG     Q+  LE GV+I +
Sbjct  243  DGPICLVLAPTRELAQQVQQVADDYGKC---SRLKSTCIYGGAPKGPQIRDLERGVEICI  299

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D + +GK NL +  +LVLDEAD +L  G+   I ++ +QI          Q +
Sbjct  300  ATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI------RPDRQTL  353

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT    +V++L+E  +   T +++    ++  + +H ++ +    D   E       
Sbjct  354  MWSATWPK-EVRQLAEDFLRDYTQINV---GNLELSANHNILQI---VDVCME-------  399

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                   KD+               K+++    + A KE+K    IIF  TK  CD+L +
Sbjct  400  -----SEKDH---------------KLIQLMEEIMAEKENK---TIIFVETKRRCDDLTR  436

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
               + G         +  +C+HGD+   ER   L  F+ G    LI TDVA+RG+D+  V
Sbjct  437  RMRRDG---------WPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDV  487

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
             +VIN   P+  ++YVHRIGR  R+   G A + 
Sbjct  488  KFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTF  521


 Score = 41.2 bits (95),  Expect = 0.038, Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 25/37 (68%), Gaps = 0/37 (0%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            PT IQ +  PL L G D++  A+TGSGKT A+ +P I
Sbjct  194  PTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAI  230


>sp|Q8EJQ5|RHLB_SHEON ATP-dependent RNA helicase RhlB OS=Shewanella 
oneidensis (strain MR-1) OX=211586 GN=rhlB PE=3 SV=1
Length=439

 Score = 134 bits (337),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 105/339 (31%), Positives = 163/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+A+I+ P+RELA Q   +     K+    +L+  ++ GG +   Q  VL+ GVDI++
Sbjct  83   NQPRAIIMAPTRELAIQIAKDAILLAKHT---RLKVGIVYGGESYDVQRKVLDQGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GR+ D V  G +NL+ ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRIIDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNA---DQRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S  V++L+   M+ P  V++  E+     +   +  P      RL   L +  
Sbjct  197  F-SATL-SMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQEDKMRLLLTLIE--  252

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                               E W E                    +AI+F  TK  C+NL 
Sbjct  253  -------------------EDWPE--------------------KAIVFSNTKHSCENLW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +        +  GH+     L GD    +R + LE+F +G +  L+ TDVAARG+ I  
Sbjct  274  SWL-------EGDGHRVGL--LTGDVPQKKRIRILEQFTQGQLDILVATDVAARGLHISD  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G+++S    E
Sbjct  325  VSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEE  363


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 0/55 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSI  58
           F+++ + PE+ QA+ E  +   T IQA S+P++L   D+   A+TG+GKT AF +
Sbjct  11  FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLV  65


>sp|A5UI36|RHLB_HAEIG ATP-dependent RNA helicase RhlB OS=Haemophilus 
influenzae (strain PittGG) OX=374931 GN=rhlB PE=3 SV=1
Length=415

 Score = 134 bits (336),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 105/336 (31%), Positives = 165/336 (49%), Gaps = 57/336 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+ALI+ P+RELA Q  N+ +   K      L+  L  GG     QL V+E GVDI++GT
Sbjct  84   PRALILAPTRELAVQISNDAEFLAK---ASGLKTALAYGGDGYDKQLQVIECGVDILIGT  140

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
             GR+ D V  G + L +++ +VLDEAD +   G   FI  +   + +  +   RL ++  
Sbjct  141  TGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLG---FIRDIRYLLRKCPAPQARLTMLF-  196

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SATL S+ V++L+ + M+ P +++++ E     T H +                      
Sbjct  197  SATL-SYKVRELAFEDMNDPEYIEIEPEQK---TGHRI----------------------  230

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                 K+     +N  +M +  + +++ E+  R I         +F  TK  C+ +  Y 
Sbjct  231  -----KEELFYPSNQDKM-ALLLTLMEDEWPERCI---------VFANTKHRCEEIWGYL  275

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                      GH+     L GD    +R   L++F  GD+  L+ TDVAARG+ I  V +
Sbjct  276  A-------ADGHRVGL--LTGDVAQKKRLSLLKQFTDGDLDILVATDVAARGLHISDVTH  326

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V N  LPD++++YVHRIGR GRA   G++IS    E
Sbjct  327  VFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEE  362


 Score = 39.3 bits (90),  Expect = 0.11, Method: Compositional matrix adjust.
 Identities = 22/53 (42%), Positives = 32/53 (60%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS + + P +  A+ +  +   T IQA S+P+ L G DV   A+TG+GKT AF
Sbjct  11  FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAF  63


>sp|Q6LLL5|RHLB_PHOPR ATP-dependent RNA helicase RhlB OS=Photobacterium 
profundum (strain SS9) OX=298386 GN=rhlB PE=3 SV=1
Length=437

 Score = 134 bits (337),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 109/338 (32%), Positives = 166/338 (49%), Gaps = 57/338 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+A+I+ P+RELA Q  N+       + +  L+  L  GG A   Q  V   GVDI++
Sbjct  83   NQPRAIIMAPTRELAIQIYNDAAPL---LASTGLKAGLAYGGEAYEKQQKVFAEGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GR+ D      ++L+ ++ +VLDEAD +   G+   I  +  ++P   +   RL ++
Sbjct  140  GTCGRIIDFYKQRVIDLASIQVVVLDEADRMFDLGFIKDIRFLFRRMP---APKARLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
              SATL S+ VK+L+ + M+ P                 VVV  N KT          H+
Sbjct  197  F-SATL-SYRVKELAFEHMNSP---------------ESVVVEPNQKT---------GHL  230

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
              +++    N            E +++L+       I+E   D+AIIF  TK  C+++  
Sbjct  231  IQEELFYPSN-----------QEKMRLLQT-----LIEEEWPDRAIIFANTKHRCEDI--  272

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
                  G      H+     L+GD    +R + LE+F +GD+  L+ TDVAARG+ I  V
Sbjct  273  -----WGHLAADNHRVGL--LNGDVPQKKRVRILEQFTQGDIDILVATDVAARGLHIPQV  325

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             +V N  LPD+ ++YVHRIGR GRA   G +IS    E
Sbjct  326  THVYNYDLPDDAEDYVHRIGRTGRAGESGSSISFACEE  363


 Score = 42.7 bits (99),  Expect = 0.009, Method: Compositional matrix adjust.
 Identities = 19/53 (36%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           F+++G+ P + + ++   +   T IQA ++P++L G D+   A+TG+GKT AF
Sbjct  11  FADLGLEPTVLEGLDAQGFHYCTPIQALALPVVLTGQDIAGQAQTGTGKTLAF  63


>sp|A8GZJ0|RHLB_SHEPA ATP-dependent RNA helicase RhlB OS=Shewanella 
pealeana (strain ATCC 700345 / ANG-SQ1) OX=398579 GN=rhlB 
PE=3 SV=1
Length=436

 Score = 134 bits (337),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 106/338 (31%), Positives = 166/338 (49%), Gaps = 57/338 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+A+I+ P+RELA Q   +     K+     L+  ++ GG     Q  VL+ GVDI++
Sbjct  83   NQPRAIIMAPTRELAIQIAKDANLLAKHTG---LKVGIVYGGEGYEVQRKVLDKGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GR+ D V  G +N+S ++ +VLDEAD +   G+   I  +  ++P    D K    +
Sbjct  140  GTTGRIIDYVRQGVINVSCIQAVVLDEADRMFDLGFIKDIRFLFRRMP----DAKSRLNM  195

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SATL S  V++L+   M+ P  V+               +  N KT +          
Sbjct  196  LFSATL-SMKVQELAYDHMNEPEKVE---------------IAPNEKTSK----------  229

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                     N +     P M  E + +L     +  ++E   ++AI+F  TK  C+ +  
Sbjct  230  ---------NIKEEIFYPSM-EEKMPLL-----LSLLEEDWPEKAIVFSNTKHSCEKVWS  274

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
            +        +  GH+     L GD    +R + LE+F KGD+  L+ TDVAARG+ I  V
Sbjct  275  WL-------EGDGHRAGL--LTGDVPQKKRLRILEQFTKGDIDILVATDVAARGLHISDV  325

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             +V N  LPD+ ++YVHRIGR GRA + G+++S    E
Sbjct  326  SHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFACEE  363


 Score = 41.2 bits (95),  Expect = 0.028, Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 0/64 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F++  +  E+ QA+ E  +   T IQA S+P++L   D+   A+TG+GKT AF +     
Sbjct  11  FADFPLHKEVHQALNEAGFEFCTPIQALSLPILLEKKDIAGQAQTGTGKTLAFLVATFNH  70

Query  64  VYET  67
           +  T
Sbjct  71  LLST  74


>sp|A1RFB3|RHLB_SHESW ATP-dependent RNA helicase RhlB OS=Shewanella 
sp. (strain W3-18-1) OX=351745 GN=rhlB PE=3 SV=1
Length=439

 Score = 134 bits (337),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 106/339 (31%), Positives = 162/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+A+I+ P+RELA Q   +     K+    +L+  ++ GG +   Q  VL+ GVDI++
Sbjct  83   NQPRAIIMAPTRELAIQIAKDAILLAKHT---RLKVGIVYGGESYDVQRKVLDQGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GR+ D V  G ++L+ ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRIIDYVRQGIISLTAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDA---NQRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S  V++L+   M+ P  VD+  ++     +   V  P      RL   L +  
Sbjct  197  F-SATL-SMKVQELAYDHMNDPVKVDIAPDEKTSKNIKEEVFYPSQEDKMRLLLTLIE--  252

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                               E W E                    +AI+F  TK  C+NL 
Sbjct  253  -------------------EDWPE--------------------KAIVFSNTKHSCENLW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +        +  GH+     L GD    +R + LE+F  G +  L+ TDVAARG+ I  
Sbjct  274  SWL-------EGDGHRVGL--LTGDVPQKKRIRILEQFTSGQLDILVATDVAARGLHISD  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G++IS    E
Sbjct  325  VSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSISFACEE  363


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 0/55 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSI  58
           F+++ + PE+ QA+ E  +   T IQA S+P++L   D+   A+TG+GKT AF +
Sbjct  11  FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLV  65


>sp|A4YB09|RHLB_SHEPC ATP-dependent RNA helicase RhlB OS=Shewanella 
putrefaciens (strain CN-32 / ATCC BAA-453) OX=319224 GN=rhlB 
PE=3 SV=1
Length=439

 Score = 134 bits (337),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 106/339 (31%), Positives = 162/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+A+I+ P+RELA Q   +     K+    +L+  ++ GG +   Q  VL+ GVDI++
Sbjct  83   NQPRAIIMAPTRELAIQIAKDAILLAKHT---RLKVGIVYGGESYDVQRKVLDQGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GR+ D V  G ++L+ ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRIIDYVRQGIISLTAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDA---NQRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S  V++L+   M+ P  VD+  ++     +   V  P      RL   L +  
Sbjct  197  F-SATL-SMKVQELAYDHMNDPVKVDIAPDEKTSKNIKEEVFYPSQEDKMRLLLTLIE--  252

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                               E W E                    +AI+F  TK  C+NL 
Sbjct  253  -------------------EDWPE--------------------KAIVFSNTKHSCENLW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +        +  GH+     L GD    +R + LE+F  G +  L+ TDVAARG+ I  
Sbjct  274  SWL-------EGDGHRVGL--LTGDVPQKKRIRILEQFTSGQLDILVATDVAARGLHISD  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G++IS    E
Sbjct  325  VSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSISFACEE  363


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 0/55 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSI  58
           F+++ + PE+ QA+ E  +   T IQA S+P++L   D+   A+TG+GKT AF +
Sbjct  11  FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLV  65


>sp|A8G0U0|RHLB_SHESH ATP-dependent RNA helicase RhlB OS=Shewanella 
sediminis (strain HAW-EB3) OX=425104 GN=rhlB PE=3 SV=1
Length=435

 Score = 134 bits (337),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 106/338 (31%), Positives = 166/338 (49%), Gaps = 57/338 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+A+I+ P+RELA Q   +     K+     L+  ++ GG +   Q  VL+ GVDI++
Sbjct  83   NQPRAIIMAPTRELAIQIAKDADLLAKHTG---LKVGIVYGGESYEVQRKVLDKGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GR+ D V  G +N+S ++ +VLDEAD +   G+   I  +  ++P    D K    +
Sbjct  140  GTTGRIIDYVRQGIINVSAIQAVVLDEADRMFDLGFIKDIRFLFRRMP----DAKSRLNM  195

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SATL S  V++L+   M+ P  V+               +  N KT +          
Sbjct  196  LFSATL-SMKVQELAYDHMNEPEKVE---------------IAPNEKTSK----------  229

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                     N +     P M  E +++L     +  ++E   D+AI+F  TK  C+ L  
Sbjct  230  ---------NIKEEIFYPSM-DEKMRLL-----LTLLEEDWPDKAIVFSNTKHSCEKLWS  274

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
            +        +  GH+     L GD    +R + LE F +G +  L+ TDVAARG+ I  V
Sbjct  275  WL-------EGDGHRVGL--LTGDVPQKKRIRILELFTEGKLDVLVATDVAARGLHISDV  325

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             +V N  LPD+ ++YVHRIGR GRA + G+++S    E
Sbjct  326  SHVYNYDLPDDCEDYVHRIGRTGRAGKKGVSVSFACEE  363


 Score = 40.4 bits (93),  Expect = 0.055, Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 0/55 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSI  58
           F++  +  EI  A+ E  +   T IQA S+P++L   D+   A+TG+GKT AF +
Sbjct  11  FADFSLQTEIKTALNESGFEYCTPIQALSLPILLQKKDIAGQAQTGTGKTLAFLV  65


>sp|P24782|DBP2_SCHPO ATP-dependent RNA helicase dbp2 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp2 
PE=2 SV=2
Length=550

 Score = 135 bits (341),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 101/341 (30%), Positives = 156/341 (46%), Gaps = 55/341 (16%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  L++ P+RELA Q      +F K   + ++R   + GGV    Q+  L  GV+I +
Sbjct  194  DGPIVLVLAPTRELAVQIQQECTKFGK---SSRIRNTCVYGGVPRGPQIRDLIRGVEICI  250

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D++ + K NL +V +LVLDEAD +L  G+   I ++ +QI          Q +
Sbjct  251  ATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIR------PDRQTV  304

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT               +P  V     D + D +   V  ++         L  SH 
Sbjct  305  MFSAT---------------WPKEVQRLARDYLNDYIQVTVGSLD---------LAASHN  340

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                V   DN    A   +   E +K              + ++ +IF  TK   D++ +
Sbjct  341  IKQIVEVVDNADKRARLGKDIEEVLK-------------DRDNKVLIFTGTKRVADDITR  387

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
             F++Q G P         + +HGD+   ER   L  F+ G    ++ TDVA+RGID+ G+
Sbjct  388  -FLRQDGWP--------ALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGI  438

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
             +V N   P   ++YVHRIGR GRA   G A +   ++  K
Sbjct  439  THVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAK  479


 Score = 42.7 bits (99),  Expect = 0.012, Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 0/61 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E G    + + V+++ +  PT IQ ++ P+ + G D++  + TGSGKT ++ +P 
Sbjct  121  VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPA  180

Query  61   I  61
            I
Sbjct  181  I  181


>sp|Q4PHU9|DBP2_USTMA ATP-dependent RNA helicase DBP2 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP2 PE=3 SV=2
Length=552

 Score = 135 bits (341),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 102/341 (30%), Positives = 161/341 (47%), Gaps = 56/341 (16%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P ALI+ P+RELA Q      +F     + +LR   + GGV    Q+  L+ G +I +
Sbjct  202  DGPIALILAPTRELANQIQVECNRFG---GSSRLRTCAVYGGVPKGPQIRDLQRGAEICI  258

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D+V  GK NL +V +LV+DEAD +L  G+   I ++  QI          Q +
Sbjct  259  ATPGRLIDMVDAGKTNLRRVTYLVMDEADRMLDMGFEPQIRKILQQI------RPDRQTL  312

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT    +V++L+   ++    V++   +   +  H+V   +   T+  +E+ GK   
Sbjct  313  MFSATWPK-EVQRLAGDFLNNYAQVNIGSTELAAN--HNVKQIIEVCTE--FEKKGKLIG  367

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
              + + A++                                  + IIF  TK   D+L +
Sbjct  368  HLETISAENG---------------------------------KVIIFTSTKRVADDLTK  394

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
             F++Q G P         + +HGD++  ER   L  FK G    ++ T VA+RG+D+  +
Sbjct  395  -FLRQDGWP--------ALAIHGDKQQQERDWVLAEFKSGRSPIMVATAVASRGLDVKDI  445

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
             YVIN   P   ++YVH+IGR GRA R G A +    E  K
Sbjct  446  SYVINYDFPTNTEDYVHQIGRTGRAGRTGTAYTYFTPENSK  486


 Score = 47.0 bits (110),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 0/61 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F E G    I   +++M +  P+ IQ+++ P+ L G D++  AETGSGKT  F++P 
Sbjct  129  VTSFDEAGFPDYILSEIKKMGFSEPSAIQSQAWPMALSGRDLVAIAETGSGKTIGFALPA  188

Query  61   I  61
            +
Sbjct  189  M  189


>sp|P0CQ76|DBP2_CRYNJ ATP-dependent RNA helicase DBP2-A OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=DBP2 PE=3 SV=1
Length=540

 Score = 135 bits (340),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 105/343 (31%), Positives = 165/343 (48%), Gaps = 60/343 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  LI+ P+RELA Q      +F +   + ++R   I GG     Q+  L+ GV+I V
Sbjct  182  DGPIVLILAPTRELAVQIQTEATKFGQ---SSRIRNTAIYGGAPKGPQIRDLQRGVEICV  238

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D++ TGK NL +V +LV+DEAD +L  G+   I ++   + Q+  D    Q +
Sbjct  239  ATPGRLIDMLETGKTNLKRVTYLVMDEADRMLDMGFEPQIRKI---VSQIRPDR---QTL  292

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK--S  462
            + SAT    +V++L+   +H    V++   D   +  H+V   V   TD  +++  K  S
Sbjct  293  LFSATWPK-EVQRLAMDFLHDFIQVNIGSLDLTAN--HNVAQHVEVCTD--FDKRSKLLS  347

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
            H+                      E I    G             + +IF  TK   D+L
Sbjct  348  HL----------------------EKISQENG-------------KVLIFVATKRVADDL  372

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
             + F++  G P         + +HGD++  ER   L  FK G    ++ TDVA+RG+D+ 
Sbjct  373  TK-FLRMDGWP--------ALAIHGDKQQAERDWVLAEFKSGRSPIMLATDVASRGLDVR  423

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
             + YVIN   P+  ++Y+HRIGR GRA R G + +    +  K
Sbjct  424  DIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNSK  466


 Score = 47.4 bits (111),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (56%), Gaps = 0/61 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E G    I   +  M +  P+ IQ ++ P+ L G D++  AETGSGKT +F +P 
Sbjct  109  ITTFEEAGFPDYIMSEIRRMGFTAPSSIQCQAWPMALSGRDLVAIAETGSGKTISFCLPA  168

Query  61   I  61
            +
Sbjct  169  M  169


>sp|P0CQ77|DBP2_CRYNB ATP-dependent RNA helicase DBP2-A OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=DBP2 PE=3 SV=1
Length=540

 Score = 135 bits (340),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 105/343 (31%), Positives = 165/343 (48%), Gaps = 60/343 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  LI+ P+RELA Q      +F +   + ++R   I GG     Q+  L+ GV+I V
Sbjct  182  DGPIVLILAPTRELAVQIQTEATKFGQ---SSRIRNTAIYGGAPKGPQIRDLQRGVEICV  238

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D++ TGK NL +V +LV+DEAD +L  G+   I ++   + Q+  D    Q +
Sbjct  239  ATPGRLIDMLETGKTNLKRVTYLVMDEADRMLDMGFEPQIRKI---VSQIRPDR---QTL  292

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK--S  462
            + SAT    +V++L+   +H    V++   D   +  H+V   V   TD  +++  K  S
Sbjct  293  LFSATWPK-EVQRLAMDFLHDFIQVNIGSLDLTAN--HNVAQHVEVCTD--FDKRSKLLS  347

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
            H+                      E I    G             + +IF  TK   D+L
Sbjct  348  HL----------------------EKISQENG-------------KVLIFVATKRVADDL  372

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
             + F++  G P         + +HGD++  ER   L  FK G    ++ TDVA+RG+D+ 
Sbjct  373  TK-FLRMDGWP--------ALAIHGDKQQAERDWVLAEFKSGRSPIMLATDVASRGLDVR  423

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
             + YVIN   P+  ++Y+HRIGR GRA R G + +    +  K
Sbjct  424  DIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNSK  466


 Score = 47.4 bits (111),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (56%), Gaps = 0/61 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E G    I   +  M +  P+ IQ ++ P+ L G D++  AETGSGKT +F +P 
Sbjct  109  ITTFEEAGFPDYIMSEIRRMGFTAPSSIQCQAWPMALSGRDLVAIAETGSGKTISFCLPA  168

Query  61   I  61
            +
Sbjct  169  M  169


>sp|Q02748|IF4A_DROME Eukaryotic initiation factor 4A OS=Drosophila 
melanogaster OX=7227 GN=eIF4A PE=1 SV=3
Length=403

 Score = 132 bits (333),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 107/348 (31%), Positives = 167/348 (48%), Gaps = 64/348 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+RELA Q    +    +Y+   K+     IGG   R+   +LE+G  +VVGTP
Sbjct  100  QALILAPTRELATQIQRVVMALGEYM---KVHSHACIGGTNVREDARILESGCHVVVGTP  156

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D+++   L    ++  VLDEAD +LS+G+ D I  +   +P        +QVI+ S
Sbjct  157  GRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLP------PDVQVILLS  210

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+   DV ++S   M  P  + +K E+   + +    V V  +    W +LG       
Sbjct  211  ATMPP-DVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQEN---W-KLGT------  259

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                                    L   Y   +I      Q++IFC T+   D L Q   
Sbjct  260  ------------------------LCDLYDTLSIT-----QSVIFCNTRRKVDQLTQ---  287

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
                  +   H F+   +HGD +  +R+  +++F+ G  R LI TD+ ARGID+  V  V
Sbjct  288  ------EMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLV  341

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV------WYH  629
            IN  LP  ++NY+HRIGR GR  R G+AI+ +  +  ++      +YH
Sbjct  342  INYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIEQFYH  389


 Score = 40.4 bits (93),  Expect = 0.058, Method: Compositional matrix adjust.
 Identities = 20/69 (29%), Positives = 40/69 (58%), Gaps = 0/69 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F +M +  E+ + +    +  P+ IQ  +I   + G DV+  A++G+GKT  FSI ++Q 
Sbjct  32  FDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQ  91

Query  64  VYETLKDQQ  72
           +  ++++ Q
Sbjct  92  IDTSIRECQ  100


>sp|Q4IP34|PRP5_GIBZE Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 
/ FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=PRP5 PE=3 
SV=2
Length=1207

 Score = 138 bits (347),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 163/346 (47%), Gaps = 64/346 (18%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  LI+ P+RELA Q   + K F K +    LR +   GG   R+Q++ L+ G +I+V
Sbjct  649  DGPIGLIMTPTRELAVQIHKDCKPFLKMMG---LRAVCAYGGAPIREQIAELKRGAEIIV  705

Query  345  GTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRM-HNQIPQVTSDGKR  400
             TPGR+ DL++  +    NL +V ++VLDEAD +   G+   + ++  N  P        
Sbjct  706  CTPGRMIDLLAANQGRVTNLKRVTYVVLDEADRMFDMGFEPQVMKIFANMRPD-------  758

Query  401  LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV-VPVNP-KTDRLWER  458
             Q I+ SAT+    +  L++K++  P  V + G   V   +  +V V   P K  R+ E 
Sbjct  759  RQTILFSATMPRI-IDSLTKKVLKNPIEVTVGGRSVVAKEIEQIVEVRDEPSKFHRVLEL  817

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
            LG+ + R +D                                       + +IF   +  
Sbjct  818  LGELYDRDEDA--------------------------------------RTLIFVERQEK  839

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
             D+L +  + +G         + C+ +HG +   +R   +  FKKG V  LI T VAARG
Sbjct  840  ADDLLKELMMKG---------YPCMSIHGGKDQIDRDSTISDFKKGVVPILIATSVAARG  890

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            +D+  +  VIN   P+  ++YVHR GR GRA   G+A++ V  E+E
Sbjct  891  LDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGVAVTFVTPEQE  936


 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 23/68 (34%), Positives = 42/68 (62%), Gaps = 4/68 (6%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            +++ G+  +    V+ + +  PT IQ +++P ++ G DV+  A+TGSGKT AF +P    
Sbjct  579  WAQCGLTRQTLDVVDNLGYEKPTPIQMQALPALMSGRDVIGVAKTGSGKTVAFLLP----  634

Query  64   VYETLKDQ  71
            ++  +KDQ
Sbjct  635  MFRHIKDQ  642


>sp|Q9BQ39|DDX50_HUMAN ATP-dependent RNA helicase DDX50 OS=Homo 
sapiens OX=9606 GN=DDX50 PE=1 SV=1
Length=737

 Score = 137 bits (344),  Expect = 4e-32, Method: Compositional matrix adjust.
 Identities = 99/334 (30%), Positives = 165/334 (49%), Gaps = 58/334 (17%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            +PK L++ P+RELA Q   + K   +     KL      GG + + Q++ + NG+DI+VG
Sbjct  211  SPKVLVLAPTRELANQVAKDFKDITR-----KLSVACFYGGTSYQSQINHIRNGIDILVG  265

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGR+ D + +G+L+LS++R +VLDE D +L  G+++ +  + ++  +  S+    Q ++
Sbjct  266  TPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDN-PQTLL  324

Query  406  CSATLHSFDVKKLSEKIMHFP-TWVDLKGE--DSVPDTVHHVVVPVNPKTDRLWERLGKS  462
             SAT   + V K+++K M      VDL G+       TV H+ +  +      W      
Sbjct  325  FSATCPQW-VYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCH------W------  371

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
                            +  P +  + +++  G             +AIIFC TK +   +
Sbjct  372  ----------------SQRPAVIGDVLQVYSGSEG----------RAIIFCETKKNVTEM  405

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
                      P  K +     CLHGD    +R+  L+ F++G  + L+ T+VAARG+DI 
Sbjct  406  -------AMNPHIKQN---AQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIP  455

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAI  616
             V  VI  + P + ++Y+HR GR GRA R G+ I
Sbjct  456  EVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICI  489


 Score = 35.4 bits (80),  Expect = 2.1, Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 45/79 (57%), Gaps = 7/79 (9%)

Query  3    AFSEMGVMPEIAQAVEE--MDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            AFS   +  E  + ++   + +L P  IQ ++   +  G D++  A TG+GKT +F+IP+
Sbjct  138  AFSNFPISEETIKLLKGRGVTYLFP--IQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPL  195

Query  61   IQIVYETLKDQQEGKKGKT  79
            I+ +    ++Q+  KK ++
Sbjct  196  IERLQ---RNQETIKKSRS  211


>sp|C3LQR1|RHLB_VIBCM ATP-dependent RNA helicase RhlB OS=Vibrio 
cholerae serotype O1 (strain M66-2) OX=579112 GN=rhlB PE=3 
SV=1
Length=438

 Score = 133 bits (334),  Expect = 4e-32, Method: Compositional matrix adjust.
 Identities = 112/337 (33%), Positives = 165/337 (49%), Gaps = 59/337 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+A+I+ P+RELA Q  N+ +     + +  L+  L  GG +   QL+ L++GVDI++GT
Sbjct  85   PRAIIMAPTRELAIQIFNDAEPL---LASTGLKAALAYGGESYDKQLAKLQSGVDILIGT  141

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
             GR+ D       NL+ ++ +VLDEAD +   G+   I  +  ++P+      RL ++  
Sbjct  142  TGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKD---RLNMLF-  197

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKT-DRLWERLGKSHIR  465
            SATL S+ V++L+ + M+ P                HVVV    KT  R+ E L      
Sbjct  198  SATL-SYRVQELAFEHMNNP---------------EHVVVEPEQKTGHRIQEELFYP---  238

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                           S E     ++ L        I+E   D+AIIF  TK  C   EQ 
Sbjct  239  ---------------SNEHKMALLQTL--------IEEEWPDRAIIFANTKHRC---EQI  272

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
            +        + G       L GD    +R++ LE+F +GDV  L+ TDVAARG+ I  V 
Sbjct  273  WAHLAADNHRVG------LLTGDVPQKKRERILEQFTQGDVDILVATDVAARGLHIPQVT  326

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            +V N  LPD+ ++YVHRIGR GRA   G +IS    E
Sbjct  327  HVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEE  363


 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 20/53 (38%), Positives = 36/53 (68%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           F++ G+ P++   +E+  ++  T IQA ++P++L G D+   A+TG+GKT AF
Sbjct  11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAF  63


>sp|Q9KV52|RHLB_VIBCH ATP-dependent RNA helicase RhlB OS=Vibrio 
cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) 
OX=243277 GN=rhlB PE=3 SV=1
Length=438

 Score = 133 bits (334),  Expect = 4e-32, Method: Compositional matrix adjust.
 Identities = 112/337 (33%), Positives = 165/337 (49%), Gaps = 59/337 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+A+I+ P+RELA Q  N+ +     + +  L+  L  GG +   QL+ L++GVDI++GT
Sbjct  85   PRAIIMAPTRELAIQIFNDAEPL---LASTGLKAALAYGGESYDKQLAKLQSGVDILIGT  141

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
             GR+ D       NL+ ++ +VLDEAD +   G+   I  +  ++P+      RL ++  
Sbjct  142  TGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKD---RLNMLF-  197

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKT-DRLWERLGKSHIR  465
            SATL S+ V++L+ + M+ P                HVVV    KT  R+ E L      
Sbjct  198  SATL-SYRVQELAFEHMNNP---------------EHVVVEPEQKTGHRIQEELFYP---  238

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                           S E     ++ L        I+E   D+AIIF  TK  C   EQ 
Sbjct  239  ---------------SNEHKMALLQTL--------IEEEWPDRAIIFANTKHRC---EQI  272

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
            +        + G       L GD    +R++ LE+F +GDV  L+ TDVAARG+ I  V 
Sbjct  273  WAHLAADNHRVG------LLTGDVPQKKRERILEQFTQGDVDILVATDVAARGLHIPQVT  326

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            +V N  LPD+ ++YVHRIGR GRA   G +IS    E
Sbjct  327  HVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEE  363


 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 20/53 (38%), Positives = 36/53 (68%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           F++ G+ P++   +E+  ++  T IQA ++P++L G D+   A+TG+GKT AF
Sbjct  11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAF  63


>sp|A5F3R4|RHLB_VIBC3 ATP-dependent RNA helicase RhlB OS=Vibrio 
cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 
395 / O395) OX=345073 GN=rhlB PE=3 SV=1
Length=438

 Score = 133 bits (334),  Expect = 4e-32, Method: Compositional matrix adjust.
 Identities = 112/337 (33%), Positives = 165/337 (49%), Gaps = 59/337 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+A+I+ P+RELA Q  N+ +     + +  L+  L  GG +   QL+ L++GVDI++GT
Sbjct  85   PRAIIMAPTRELAIQIFNDAEPL---LASTGLKAALAYGGESYDKQLAKLQSGVDILIGT  141

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
             GR+ D       NL+ ++ +VLDEAD +   G+   I  +  ++P+      RL ++  
Sbjct  142  TGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKD---RLNMLF-  197

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKT-DRLWERLGKSHIR  465
            SATL S+ V++L+ + M+ P                HVVV    KT  R+ E L      
Sbjct  198  SATL-SYRVQELAFEHMNNP---------------EHVVVEPEQKTGHRIQEELFYP---  238

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                           S E     ++ L        I+E   D+AIIF  TK  C   EQ 
Sbjct  239  ---------------SNEHKMALLQTL--------IEEEWPDRAIIFANTKHRC---EQI  272

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
            +        + G       L GD    +R++ LE+F +GDV  L+ TDVAARG+ I  V 
Sbjct  273  WAHLAADNHRVG------LLTGDVPQKKRERILEQFTQGDVDILVATDVAARGLHIPQVT  326

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            +V N  LPD+ ++YVHRIGR GRA   G +IS    E
Sbjct  327  HVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEE  363


 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 20/53 (38%), Positives = 36/53 (68%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           F++ G+ P++   +E+  ++  T IQA ++P++L G D+   A+TG+GKT AF
Sbjct  11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAF  63


>sp|Q4L7W0|CSHA_STAHJ DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus haemolyticus (strain JCSC1435) OX=279808 
GN=cshA PE=3 SV=1
Length=503

 Score = 134 bits (337),  Expect = 4e-32, Method: Compositional matrix adjust.
 Identities = 99/334 (30%), Positives = 161/334 (48%), Gaps = 62/334 (19%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+RELA Q    +++F +      ++ + + GG+    Q+  L+ G  IVVGTP
Sbjct  71   QALILAPTRELAMQVAEQLREFSR---GQNVQVVTVFGGMPIDRQIKALKRGPQIVVGTP  127

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D ++   L  + +  L+LDEAD +++ G+ D +  + ++IP      ++ Q ++ S
Sbjct  128  GRVIDHLNRRTLKTNGIHTLILDEADEMMNMGFIDDMRFIMDKIP-----AEQRQTMLFS  182

Query  408  ATLHSFDVKKLSEKIMHFPTWVD-LKGEDSVPDT-VHHVVVPVNPKTDRLWERLGKSHIR  465
            AT+    ++ L ++ M  P  V  +  E S P    ++ +V    K D     L      
Sbjct  183  ATMPKA-IQTLVQQFMKSPQIVKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFL------  235

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
              DVH           PE+                        AI+F RTK   D L   
Sbjct  236  --DVH----------QPEL------------------------AIVFGRTKRRVDELTSA  259

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
             + +G         +    LHGD    +R + L++FK   +  L+ TDVAARG+DI GV 
Sbjct  260  LLSKG---------YKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDISGVS  310

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +V N  +P + ++Y HRIGR GRA + G+A++ V
Sbjct  311  HVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFV  344


 Score = 63.2 bits (152),  Expect = 5e-09, Method: Compositional matrix adjust.
 Identities = 30/64 (47%), Positives = 42/64 (66%), Gaps = 0/64 (0%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           M  F E+G+  +  + +E M +  PT IQ +SIP  L G D+L  A+TG+GKTGAF IP+
Sbjct  1   MQNFKELGISDKTVETLEAMGFKEPTPIQKDSIPYTLEGKDILGQAQTGTGKTGAFGIPL  60

Query  61  IQIV  64
           I+ V
Sbjct  61  IEKV  64


>sp|P0CQ70|IF4A_CRYNJ ATP-dependent RNA helicase eIF4A OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=TIF1 PE=3 SV=1
Length=401

 Score = 132 bits (332),  Expect = 5e-32, Method: Compositional matrix adjust.
 Identities = 108/358 (30%), Positives = 168/358 (47%), Gaps = 63/358 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+RELA+Q    +     Y++   +     +GG A R+ ++ L  G  IVVGTP
Sbjct  98   QALVLAPTRELAQQIQKVVIALGDYLN---VDCHACVGGTAVREDIARLNEGPHIVVGTP  154

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D+++ G L    V    LDEAD +LS G+ + I  +   +P  T      QV++ S
Sbjct  155  GRVFDMINRGALKTEAVMMFCLDEADEMLSTGFKESIYEIFQLLPGET------QVVLLS  208

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+   +V  +++K M  P  + +K ++   + +    + V                   
Sbjct  209  ATMAP-EVLDVTKKFMRDPIRILVKKDELTLEGIRQFYINV-------------------  248

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W       K E      +   + QA+IFC T+   D L Q   
Sbjct  249  -------------EKEEW-------KLETLCDLYETVTITQAVIFCSTRRKVDWLTQQL-  287

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
                       QF+   +HGD K  ER+  ++ F+ G  R LI TD+ ARGID+  V  V
Sbjct  288  --------HDRQFTVSAMHGDMKQEEREVIMKEFRSGSSRVLITTDLLARGIDVQQVSLV  339

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            IN  LP  K+NY+HRIGR GR  R G+AI+ V+ E + +   +     +  YNT+++E
Sbjct  340  INYDLPSSKENYIHRIGRGGRFGRKGVAINFVSNEDKNMLEEI-----ETYYNTQVEE  392


 Score = 41.2 bits (95),  Expect = 0.027, Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 39/69 (57%), Gaps = 0/69 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F +M +  E+ + +    +  P+ IQ  +I  I+ G D +  A++G+GKT  FS+ ++Q 
Sbjct  30  FDDMKLKGELLRGIYAYGFERPSAIQQRAIMPIVTGRDCIAQAQSGTGKTATFSVSILQR  89

Query  64  VYETLKDQQ  72
           +  T+K  Q
Sbjct  90  IDTTVKKTQ  98


>sp|P0CQ71|IF4A_CRYNB ATP-dependent RNA helicase eIF4A OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=TIF1 PE=3 SV=1
Length=401

 Score = 132 bits (332),  Expect = 5e-32, Method: Compositional matrix adjust.
 Identities = 108/358 (30%), Positives = 168/358 (47%), Gaps = 63/358 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+RELA+Q    +     Y++   +     +GG A R+ ++ L  G  IVVGTP
Sbjct  98   QALVLAPTRELAQQIQKVVIALGDYLN---VDCHACVGGTAVREDIARLNEGPHIVVGTP  154

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D+++ G L    V    LDEAD +LS G+ + I  +   +P  T      QV++ S
Sbjct  155  GRVFDMINRGALKTEAVMMFCLDEADEMLSTGFKESIYEIFQLLPGET------QVVLLS  208

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+   +V  +++K M  P  + +K ++   + +    + V                   
Sbjct  209  ATMAP-EVLDVTKKFMRDPIRILVKKDELTLEGIRQFYINV-------------------  248

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W       K E      +   + QA+IFC T+   D L Q   
Sbjct  249  -------------EKEEW-------KLETLCDLYETVTITQAVIFCSTRRKVDWLTQQL-  287

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
                       QF+   +HGD K  ER+  ++ F+ G  R LI TD+ ARGID+  V  V
Sbjct  288  --------HDRQFTVSAMHGDMKQEEREVIMKEFRSGSSRVLITTDLLARGIDVQQVSLV  339

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            IN  LP  K+NY+HRIGR GR  R G+AI+ V+ E + +   +     +  YNT+++E
Sbjct  340  INYDLPSSKENYIHRIGRGGRFGRKGVAINFVSNEDKNMLEEI-----ETYYNTQVEE  392


 Score = 41.2 bits (95),  Expect = 0.027, Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 39/69 (57%), Gaps = 0/69 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F +M +  E+ + +    +  P+ IQ  +I  I+ G D +  A++G+GKT  FS+ ++Q 
Sbjct  30  FDDMKLKGELLRGIYAYGFERPSAIQQRAIMPIVTGRDCIAQAQSGTGKTATFSVSILQR  89

Query  64  VYETLKDQQ  72
           +  T+K  Q
Sbjct  90  IDTTVKKTQ  98


>sp|Q58083|H669_METJA Probable ATP-dependent RNA helicase MJ0669 
OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 
2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ0669 
PE=1 SV=1
Length=367

 Score = 131 bits (330),  Expect = 5e-32, Method: Compositional matrix adjust.
 Identities = 99/346 (29%), Positives = 164/346 (47%), Gaps = 65/346 (19%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N  +A+I+ P+RELA Q  + I+  K    N  L+   I GG A   Q+  L+N  +IVV
Sbjct  73   NGIEAIILTPTRELAIQVADEIESLK---GNKNLKIAKIYGGKAIYPQIKALKNA-NIVV  128

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GTPGR+ D ++ G LNL  V++ +LDEAD +L+ G+   + ++ N      +  K  +++
Sbjct  129  GTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILN------ACNKDKRIL  182

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT+   ++  L++K M   +++  K   ++  +   V                    
Sbjct  183  LFSATMPR-EILNLAKKYMGDYSFIKAKINANIEQSYVEV--------------------  221

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                           N  E +    ++LK          +K    ++FC+TK D   L  
Sbjct  222  ---------------NENERFEALCRLLK----------NKEFYGLVFCKTKRDTKELAS  256

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
                 G         F    +HGD    +R++ +  FK+  +R LI TDV +RGID++ +
Sbjct  257  MLRDIG---------FKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDL  307

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
              VIN  LP   ++Y+HRIGR GRA + G AIS++   + K   ++
Sbjct  308  NCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYI  353


 Score = 53.5 bits (127),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 40/65 (62%), Gaps = 1/65 (2%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGG-DVLMAAETGSGKTGAFSIPVIQ  62
           F+E+ +   I  A+    +  PTDIQ + IPL L    +++  A TGSGKT +F+IP+I+
Sbjct  8   FNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE  67

Query  63  IVYET  67
           +V E 
Sbjct  68  LVNEN  72


>sp|Q6YS30|RH5_ORYSJ DEAD-box ATP-dependent RNA helicase 5 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os07g0301200 PE=2 SV=1
Length=512

 Score = 134 bits (337),  Expect = 5e-32, Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 165/341 (48%), Gaps = 60/341 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+ L++ P+RELA+Q  + + +         +  + + GG +   Q+S L++GVDIV+GT
Sbjct  168  PRVLVLSPTRELAQQIADVLCEAGAPCG---ISSVCLYGGTSKGPQISALKSGVDIVIGT  224

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGR+ DL+  G   L+ V F+VLDEAD +L  G+   +  + +Q   V       Q ++ 
Sbjct  225  PGRMKDLIEMGICRLNDVSFVVLDEADRMLDMGFEPEVRAILSQTASVR------QTVMF  278

Query  407  SATLHSFDVKKLSEKIMH-FPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
            SAT     V +L+++ M   P  V +  ED   +  H V+  V    DR           
Sbjct  279  SATWPPA-VHQLAQEFMDPNPIKVVIGSEDLAAN--HDVMQIVEVLDDR-----------  324

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM--DQAIIFCRTKIDCDNLE  523
                 ++D            S  + +L         K HK   ++ ++F   K +   +E
Sbjct  325  -----SRD------------SRLVALLD--------KYHKAQRNRVLVFVLYKREATRVE  359

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
                ++G         +S V +HGD+  H+R + L  FK+G    +I TDVA+RG+DI  
Sbjct  360  TMLQRRG---------WSAVSVHGDKAQHDRTKALSLFKEGSCPLMIATDVASRGLDIPD  410

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            V  VIN + P   ++YVHRIGR GRA + G+A +    E +
Sbjct  411  VEVVINYSYPLTTEDYVHRIGRTGRAGKKGVAHTFFTQENK  451


 Score = 40.0 bits (92),  Expect = 0.075, Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 42/77 (55%), Gaps = 3/77 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +++F+   + P++    +  +   P+ IQA + P +L G D +  A TGSGKT AF +P 
Sbjct  93   LSSFAATALPPQVLDCCKGFER--PSPIQAYAWPYLLDGRDFIGIAATGSGKTIAFGVPA  150

Query  61   IQIVYETLKDQQEGKKG  77
            +  V   +  ++  KKG
Sbjct  151  LMHVRRKM-GEKSAKKG  166


>sp|Q6Z2Z4|IF4A3_ORYSJ Eukaryotic initiation factor 4A-3 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os02g0146600 PE=1 SV=1
Length=414

 Score = 132 bits (333),  Expect = 5e-32, Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 166/359 (46%), Gaps = 65/359 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            ++L++ P+RELA+Q    ++    Y+    ++    +GG + R+   +L +GV +VVGTP
Sbjct  111  QSLVLAPTRELAQQIEKVMRALGDYL---GVKVHACVGGTSVREDQRILASGVHVVVGTP  167

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++  VLDEAD +LS+G+ D I  +   +P       ++QV V S
Sbjct  168  GRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLP------PKIQVGVFS  221

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+   +  +++ K M+ P  + +K ++   + +    V V                   
Sbjct  222  ATMPP-EALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEK-----------------  263

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W   +  L   Y   AI      Q++IF  T+   D L     
Sbjct  264  ---------------EDWK--LDTLCDLYETLAIT-----QSVIFVNTRRKVDWL-----  296

Query  528  QQGGGPDK-KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                  DK +    +    HGD   + R   +  F+ G  R LI TD+ ARGID+  V  
Sbjct  297  -----TDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL  351

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            VIN  LP + +NY+HRIGR GR  R G+AI+ V  + E++ + +     +  YN  ++E
Sbjct  352  VINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI-----QRFYNVTIEE  405


 Score = 34.7 bits (78),  Expect = 3.4, Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 31/60 (52%), Gaps = 0/60 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F +MG+   + + +    +  P+ IQ   I     G DV+  A++G+GKT  F   ++Q
Sbjct  42   SFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ  101


>sp|P17844|DDX5_HUMAN Probable ATP-dependent RNA helicase DDX5 
OS=Homo sapiens OX=9606 GN=DDX5 PE=1 SV=1
Length=614

 Score = 135 bits (341),  Expect = 5e-32, Method: Compositional matrix adjust.
 Identities = 100/338 (30%), Positives = 156/338 (46%), Gaps = 63/338 (19%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFK-KYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            + P  L++ P+RELA+Q    ++Q   +Y    +L+   I GG     Q+  LE GV+I 
Sbjct  166  DGPICLVLAPTRELAQQ----VQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEIC  221

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            + TPGRL D +  GK NL +  +LVLDEAD +L  G+   I ++   + Q+  D    Q 
Sbjct  222  IATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI---VDQIRPD---RQT  275

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            ++ SAT               +P  V    ED + D +H  +  +          L  +H
Sbjct  276  LMWSAT---------------WPKEVRQLAEDFLKDYIHINIGALE---------LSANH  311

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE---HKMDQAIIFCRTKIDCD  520
                            N  ++      + K E  +R ++E    K ++ I+F  TK  CD
Sbjct  312  ----------------NILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCD  355

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             L +   + G         +  + +HGD+   ER   L  FK G    LI TDVA+RG+D
Sbjct  356  ELTRKMRRDG---------WPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLD  406

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            +  V +VIN   P+  ++Y+HRIGR  R+ + G A + 
Sbjct  407  VEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTF  444


 Score = 42.7 bits (99),  Expect = 0.013, Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 0/58 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            F E      +   +   ++  PT IQA+  P+ L G D++  A+TGSGKT ++ +P I
Sbjct  96   FYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI  153


>sp|Q7A0D2|CSHA_STAAW DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus aureus (strain MW2) OX=196620 GN=cshA PE=3 
SV=1
Length=506

 Score = 134 bits (337),  Expect = 5e-32, Method: Compositional matrix adjust.
 Identities = 99/334 (30%), Positives = 159/334 (48%), Gaps = 62/334 (19%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            ++LI+ P+RELA Q    +++F +      ++ + + GG+    Q+  L+ G  IVVGTP
Sbjct  71   QSLILAPTRELAMQVAEQLREFSR---GQGVQVVTVFGGMPIERQIKALKKGPQIVVGTP  127

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D ++   L    +  L+LDEAD +++ G+ D +  + ++IP V     + Q ++ S
Sbjct  128  GRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAV-----QRQTMLFS  182

Query  408  ATLHSFDVKKLSEKIMHFPTWVD-LKGEDSVPDTVH-HVVVPVNPKTDRLWERLGKSHIR  465
            AT+    ++ L ++ M  P  +  +  E S P     + +V    K D     L      
Sbjct  183  ATMPKA-IQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFL------  235

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
              DVH           PE+                        AI+F RTK   D L   
Sbjct  236  --DVH----------QPEL------------------------AIVFGRTKRRVDELTSA  259

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
             I +G         +    LHGD    +R + L++FK   +  L+ TDVAARG+DI GV 
Sbjct  260  LISKG---------YKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVS  310

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +V N  +P + ++Y HRIGR GRA + G+A++ V
Sbjct  311  HVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFV  344


 Score = 63.5 bits (153),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 42/64 (66%), Gaps = 0/64 (0%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           M  F E+G+     Q++E M +  PT IQ +SIP  L G D+L  A+TG+GKTGAF IP+
Sbjct  1   MQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL  60

Query  61  IQIV  64
           I+ V
Sbjct  61  IEKV  64


>sp|Q6G7M9|CSHA_STAAS DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=cshA 
PE=3 SV=1
Length=506

 Score = 134 bits (337),  Expect = 5e-32, Method: Compositional matrix adjust.
 Identities = 99/334 (30%), Positives = 159/334 (48%), Gaps = 62/334 (19%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            ++LI+ P+RELA Q    +++F +      ++ + + GG+    Q+  L+ G  IVVGTP
Sbjct  71   QSLILAPTRELAMQVAEQLREFSR---GQGVQVVTVFGGMPIERQIKALKKGPQIVVGTP  127

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D ++   L    +  L+LDEAD +++ G+ D +  + ++IP V     + Q ++ S
Sbjct  128  GRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAV-----QRQTMLFS  182

Query  408  ATLHSFDVKKLSEKIMHFPTWVD-LKGEDSVPDTVH-HVVVPVNPKTDRLWERLGKSHIR  465
            AT+    ++ L ++ M  P  +  +  E S P     + +V    K D     L      
Sbjct  183  ATMPKA-IQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFL------  235

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
              DVH           PE+                        AI+F RTK   D L   
Sbjct  236  --DVH----------QPEL------------------------AIVFGRTKRRVDELTSA  259

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
             I +G         +    LHGD    +R + L++FK   +  L+ TDVAARG+DI GV 
Sbjct  260  LISKG---------YKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVS  310

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +V N  +P + ++Y HRIGR GRA + G+A++ V
Sbjct  311  HVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFV  344


 Score = 63.5 bits (153),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 42/64 (66%), Gaps = 0/64 (0%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           M  F E+G+     Q++E M +  PT IQ +SIP  L G D+L  A+TG+GKTGAF IP+
Sbjct  1   MQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL  60

Query  61  IQIV  64
           I+ V
Sbjct  61  IEKV  64


>sp|Q7A4G0|CSHA_STAAN DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus aureus (strain N315) OX=158879 GN=cshA PE=1 
SV=1
Length=506

 Score = 134 bits (337),  Expect = 5e-32, Method: Compositional matrix adjust.
 Identities = 99/334 (30%), Positives = 159/334 (48%), Gaps = 62/334 (19%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            ++LI+ P+RELA Q    +++F +      ++ + + GG+    Q+  L+ G  IVVGTP
Sbjct  71   QSLILAPTRELAMQVAEQLREFSR---GQGVQVVTVFGGMPIERQIKALKKGPQIVVGTP  127

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D ++   L    +  L+LDEAD +++ G+ D +  + ++IP V     + Q ++ S
Sbjct  128  GRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAV-----QRQTMLFS  182

Query  408  ATLHSFDVKKLSEKIMHFPTWVD-LKGEDSVPDTVH-HVVVPVNPKTDRLWERLGKSHIR  465
            AT+    ++ L ++ M  P  +  +  E S P     + +V    K D     L      
Sbjct  183  ATMPKA-IQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFL------  235

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
              DVH           PE+                        AI+F RTK   D L   
Sbjct  236  --DVH----------QPEL------------------------AIVFGRTKRRVDELTSA  259

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
             I +G         +    LHGD    +R + L++FK   +  L+ TDVAARG+DI GV 
Sbjct  260  LISKG---------YKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVS  310

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +V N  +P + ++Y HRIGR GRA + G+A++ V
Sbjct  311  HVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFV  344


 Score = 63.5 bits (153),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 42/64 (66%), Gaps = 0/64 (0%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           M  F E+G+     Q++E M +  PT IQ +SIP  L G D+L  A+TG+GKTGAF IP+
Sbjct  1   MQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL  60

Query  61  IQIV  64
           I+ V
Sbjct  61  IEKV  64


>sp|Q99SH6|CSHA_STAAM DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 
GN=cshA PE=1 SV=1
Length=506

 Score = 134 bits (337),  Expect = 5e-32, Method: Compositional matrix adjust.
 Identities = 99/334 (30%), Positives = 159/334 (48%), Gaps = 62/334 (19%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            ++LI+ P+RELA Q    +++F +      ++ + + GG+    Q+  L+ G  IVVGTP
Sbjct  71   QSLILAPTRELAMQVAEQLREFSR---GQGVQVVTVFGGMPIERQIKALKKGPQIVVGTP  127

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D ++   L    +  L+LDEAD +++ G+ D +  + ++IP V     + Q ++ S
Sbjct  128  GRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAV-----QRQTMLFS  182

Query  408  ATLHSFDVKKLSEKIMHFPTWVD-LKGEDSVPDTVH-HVVVPVNPKTDRLWERLGKSHIR  465
            AT+    ++ L ++ M  P  +  +  E S P     + +V    K D     L      
Sbjct  183  ATMPKA-IQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFL------  235

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
              DVH           PE+                        AI+F RTK   D L   
Sbjct  236  --DVH----------QPEL------------------------AIVFGRTKRRVDELTSA  259

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
             I +G         +    LHGD    +R + L++FK   +  L+ TDVAARG+DI GV 
Sbjct  260  LISKG---------YKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVS  310

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +V N  +P + ++Y HRIGR GRA + G+A++ V
Sbjct  311  HVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFV  344


 Score = 63.5 bits (153),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 42/64 (66%), Gaps = 0/64 (0%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           M  F E+G+     Q++E M +  PT IQ +SIP  L G D+L  A+TG+GKTGAF IP+
Sbjct  1   MQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL  60

Query  61  IQIV  64
           I+ V
Sbjct  61  IEKV  64


>sp|Q5HEB9|CSHA_STAAC DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus aureus (strain COL) OX=93062 GN=cshA PE=3 
SV=1
Length=506

 Score = 134 bits (337),  Expect = 5e-32, Method: Compositional matrix adjust.
 Identities = 99/334 (30%), Positives = 159/334 (48%), Gaps = 62/334 (19%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            ++LI+ P+RELA Q    +++F +      ++ + + GG+    Q+  L+ G  IVVGTP
Sbjct  71   QSLILAPTRELAMQVAEQLREFSR---GQGVQVVTVFGGMPIERQIKALKKGPQIVVGTP  127

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D ++   L    +  L+LDEAD +++ G+ D +  + ++IP V     + Q ++ S
Sbjct  128  GRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAV-----QRQTMLFS  182

Query  408  ATLHSFDVKKLSEKIMHFPTWVD-LKGEDSVPDTVH-HVVVPVNPKTDRLWERLGKSHIR  465
            AT+    ++ L ++ M  P  +  +  E S P     + +V    K D     L      
Sbjct  183  ATMPKA-IQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFL------  235

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
              DVH           PE+                        AI+F RTK   D L   
Sbjct  236  --DVH----------QPEL------------------------AIVFGRTKRRVDELTSA  259

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
             I +G         +    LHGD    +R + L++FK   +  L+ TDVAARG+DI GV 
Sbjct  260  LISKG---------YKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVS  310

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +V N  +P + ++Y HRIGR GRA + G+A++ V
Sbjct  311  HVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFV  344


 Score = 63.5 bits (153),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 42/64 (66%), Gaps = 0/64 (0%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           M  F E+G+     Q++E M +  PT IQ +SIP  L G D+L  A+TG+GKTGAF IP+
Sbjct  1   MQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL  60

Query  61  IQIV  64
           I+ V
Sbjct  61  IEKV  64


>sp|Q2FWH5|CSHA_STAA8 DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus aureus (strain NCTC 8325 / PS 47) OX=93061 
GN=cshA PE=1 SV=1
Length=506

 Score = 134 bits (337),  Expect = 5e-32, Method: Compositional matrix adjust.
 Identities = 99/334 (30%), Positives = 159/334 (48%), Gaps = 62/334 (19%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            ++LI+ P+RELA Q    +++F +      ++ + + GG+    Q+  L+ G  IVVGTP
Sbjct  71   QSLILAPTRELAMQVAEQLREFSR---GQGVQVVTVFGGMPIERQIKALKKGPQIVVGTP  127

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D ++   L    +  L+LDEAD +++ G+ D +  + ++IP V     + Q ++ S
Sbjct  128  GRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAV-----QRQTMLFS  182

Query  408  ATLHSFDVKKLSEKIMHFPTWVD-LKGEDSVPDTVH-HVVVPVNPKTDRLWERLGKSHIR  465
            AT+    ++ L ++ M  P  +  +  E S P     + +V    K D     L      
Sbjct  183  ATMPKA-IQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFL------  235

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
              DVH           PE+                        AI+F RTK   D L   
Sbjct  236  --DVH----------QPEL------------------------AIVFGRTKRRVDELTSA  259

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
             I +G         +    LHGD    +R + L++FK   +  L+ TDVAARG+DI GV 
Sbjct  260  LISKG---------YKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVS  310

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +V N  +P + ++Y HRIGR GRA + G+A++ V
Sbjct  311  HVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFV  344


 Score = 63.5 bits (153),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 42/64 (66%), Gaps = 0/64 (0%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           M  F E+G+     Q++E M +  PT IQ +SIP  L G D+L  A+TG+GKTGAF IP+
Sbjct  1   MQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL  60

Query  61  IQIV  64
           I+ V
Sbjct  61  IEKV  64


>sp|Q2FF45|CSHA_STAA3 DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus aureus (strain USA300) OX=367830 GN=cshA 
PE=3 SV=1
Length=506

 Score = 134 bits (337),  Expect = 5e-32, Method: Compositional matrix adjust.
 Identities = 99/334 (30%), Positives = 159/334 (48%), Gaps = 62/334 (19%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            ++LI+ P+RELA Q    +++F +      ++ + + GG+    Q+  L+ G  IVVGTP
Sbjct  71   QSLILAPTRELAMQVAEQLREFSR---GQGVQVVTVFGGMPIERQIKALKKGPQIVVGTP  127

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D ++   L    +  L+LDEAD +++ G+ D +  + ++IP V     + Q ++ S
Sbjct  128  GRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAV-----QRQTMLFS  182

Query  408  ATLHSFDVKKLSEKIMHFPTWVD-LKGEDSVPDTVH-HVVVPVNPKTDRLWERLGKSHIR  465
            AT+    ++ L ++ M  P  +  +  E S P     + +V    K D     L      
Sbjct  183  ATMPKA-IQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFL------  235

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
              DVH           PE+                        AI+F RTK   D L   
Sbjct  236  --DVH----------QPEL------------------------AIVFGRTKRRVDELTSA  259

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
             I +G         +    LHGD    +R + L++FK   +  L+ TDVAARG+DI GV 
Sbjct  260  LISKG---------YKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVS  310

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +V N  +P + ++Y HRIGR GRA + G+A++ V
Sbjct  311  HVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFV  344


 Score = 63.5 bits (153),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 42/64 (66%), Gaps = 0/64 (0%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           M  F E+G+     Q++E M +  PT IQ +SIP  L G D+L  A+TG+GKTGAF IP+
Sbjct  1   MQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL  60

Query  61  IQIV  64
           I+ V
Sbjct  61  IEKV  64


>sp|Q6GEZ3|CSHA_STAAR DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=cshA 
PE=3 SV=1
Length=506

 Score = 134 bits (337),  Expect = 5e-32, Method: Compositional matrix adjust.
 Identities = 99/334 (30%), Positives = 159/334 (48%), Gaps = 62/334 (19%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            ++LI+ P+RELA Q    +++F +      ++ + + GG+    Q+  L+ G  IVVGTP
Sbjct  71   QSLILAPTRELAMQVAEQLREFSR---GQGVQVVTVFGGMPIERQIKALKKGPQIVVGTP  127

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D ++   L    +  L+LDEAD +++ G+ D +  + ++IP V     + Q ++ S
Sbjct  128  GRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAV-----QRQTMLFS  182

Query  408  ATLHSFDVKKLSEKIMHFPTWVD-LKGEDSVPDTVH-HVVVPVNPKTDRLWERLGKSHIR  465
            AT+    ++ L ++ M  P  +  +  E S P     + +V    K D     L      
Sbjct  183  ATMPKA-IQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFL------  235

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
              DVH           PE+                        AI+F RTK   D L   
Sbjct  236  --DVH----------QPEL------------------------AIVFGRTKRRVDELTSA  259

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
             I +G         +    LHGD    +R + L++FK   +  L+ TDVAARG+DI GV 
Sbjct  260  LISKG---------YKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVS  310

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +V N  +P + ++Y HRIGR GRA + G+A++ V
Sbjct  311  HVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFV  344


 Score = 63.5 bits (153),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 42/64 (66%), Gaps = 0/64 (0%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           M  F E+G+     Q++E M +  PT IQ +SIP  L G D+L  A+TG+GKTGAF IP+
Sbjct  1   MQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL  60

Query  61  IQIV  64
           I+ V
Sbjct  61  IEKV  64


>sp|Q40471|IF4A9_TOBAC Eukaryotic initiation factor 4A-9 OS=Nicotiana 
tabacum OX=4097 PE=2 SV=1
Length=413

 Score = 132 bits (332),  Expect = 5e-32, Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 168/359 (47%), Gaps = 65/359 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+RELA+Q    ++    Y+    ++    +GG + R+   +L +GV +VVGTP
Sbjct  110  QALVLAPTRELAQQIEKVMRALGDYL---GVKVHACVGGTSVREDQRILSSGVHVVVGTP  166

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++  VLDEAD +LS+G+ D I  +   +P       ++QV V S
Sbjct  167  GRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLP------PKIQVGVFS  220

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+   +  +++ K M+ P  + +K ++   + +    V V+                  
Sbjct  221  ATMPP-EALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVD------------------  261

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W   ++ L   Y   AI      Q++IF  T+   D L     
Sbjct  262  --------------KEEWK--LETLCDLYETLAIT-----QSVIFVNTRRKVDWL-----  295

Query  528  QQGGGPDK-KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                  DK +    +    HGD   + R   +  F+ G  R LI TD+ ARGID+  V  
Sbjct  296  -----TDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL  350

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            VIN  LP + +NY+HRIGR GR  R G++I+ V ++ E++   +     +  YN  ++E
Sbjct  351  VINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTSDDERMLSDI-----QRFYNVVIEE  404


 Score = 33.9 bits (76),  Expect = 6.6, Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI-  61
            +F  MG+   + + +    +  P+ IQ   I     G DV+  A++G+GKT  F   ++ 
Sbjct  41   SFDAMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ  100

Query  62   QIVYETLKDQ  71
            Q+ YE L  Q
Sbjct  101  QLDYELLDCQ  110


>sp|Q25225|IF4A_LEIBR Probable eukaryotic initiation factor 4A 
OS=Leishmania braziliensis OX=5660 GN=LbrM01_V2.0740 PE=3 SV=2
Length=403

 Score = 132 bits (332),  Expect = 5e-32, Method: Compositional matrix adjust.
 Identities = 113/364 (31%), Positives = 174/364 (48%), Gaps = 61/364 (17%)

Query  282  FLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVD  341
            F  N  + L++ P+RELA QT   I +  +++ N        +GG   +D L  L+ GV 
Sbjct  90   FRHNLIQGLVLSPTRELALQTAEVISRIGEFLSNSAKFCETFVGGTRVQDDLRKLQAGVV  149

Query  342  IVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL  401
            + VGTPGR+ D++  G L    +R LVLDEAD +LSQG++D I  +   +P      K +
Sbjct  150  VAVGTPGRVSDVIKRGALRTESLRVLVLDEADEMLSQGFADQIYEIFRFLP------KDI  203

Query  402  QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK  461
            QV + SAT+   +V +L++K M  P  + +K E                      E + +
Sbjct  204  QVALFSATMPE-EVLELTKKFMRDPVRILVKRESLT------------------LEGIKQ  244

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
              I  ++ H  D                  L   Y   +I      Q++IF  T+   D 
Sbjct  245  FFIAVEEEHKLDT-----------------LMDLYETVSIA-----QSVIFANTRRKVDW  282

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            + +         ++  H  S   +H +    +R++ +  F+ G  R L+ TD+ ARGID+
Sbjct  283  IAEKL-------NQSNHTVS--SMHAEMPKSDRERVMNTFRSGSSRVLVTTDLVARGIDV  333

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
            H V  VIN  LP  K+NY+HRIGR GR  R G+AI+ V TEK+    H      +G Y+T
Sbjct  334  HHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFV-TEKDVELLHEI----EGHYHT  388

Query  642  RLKE  645
            ++ E
Sbjct  389  QIDE  392


 Score = 43.1 bits (100),  Expect = 0.008, Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 37/62 (60%), Gaps = 0/62 (0%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           + +F +M +   + + +    +  P+ IQ  +I     GGD++  A++G+GKTGAFSI +
Sbjct  25  IPSFDDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGL  84

Query  61  IQ  62
           +Q
Sbjct  85  LQ  86


>sp|Q61656|DDX5_MOUSE Probable ATP-dependent RNA helicase DDX5 
OS=Mus musculus OX=10090 GN=Ddx5 PE=1 SV=2
Length=614

 Score = 135 bits (340),  Expect = 6e-32, Method: Compositional matrix adjust.
 Identities = 100/338 (30%), Positives = 156/338 (46%), Gaps = 63/338 (19%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFK-KYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            + P  L++ P+RELA+Q    ++Q   +Y    +L+   I GG     Q+  LE GV+I 
Sbjct  166  DGPICLVLAPTRELAQQ----VQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEIC  221

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            + TPGRL D +  GK NL +  +LVLDEAD +L  G+   I ++   + Q+  D    Q 
Sbjct  222  IATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI---VDQIRPD---RQT  275

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            ++ SAT               +P  V    ED + D +H  +  +          L  +H
Sbjct  276  LMWSAT---------------WPKEVRQLAEDFLKDYIHINIGALE---------LSANH  311

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE---HKMDQAIIFCRTKIDCD  520
                            N  ++      + K E  +R ++E    K ++ I+F  TK  CD
Sbjct  312  ----------------NILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCD  355

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             L +   + G         +  + +HGD+   ER   L  FK G    LI TDVA+RG+D
Sbjct  356  ELTRKMRRDG---------WPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLD  406

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            +  V +VIN   P+  ++Y+HRIGR  R+ + G A + 
Sbjct  407  VEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTF  444


 Score = 42.7 bits (99),  Expect = 0.014, Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 0/58 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            F E      +   +   ++  PT IQA+  P+ L G D++  A+TGSGKT ++ +P I
Sbjct  96   FYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI  153


>sp|Q5R4I9|DDX5_PONAB Probable ATP-dependent RNA helicase DDX5 
OS=Pongo abelii OX=9601 GN=DDX5 PE=2 SV=1
Length=614

 Score = 135 bits (340),  Expect = 6e-32, Method: Compositional matrix adjust.
 Identities = 100/338 (30%), Positives = 156/338 (46%), Gaps = 63/338 (19%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFK-KYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            + P  L++ P+RELA+Q    ++Q   +Y    +L+   I GG     Q+  LE GV+I 
Sbjct  166  DGPICLVLAPTRELAQQ----VQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEIC  221

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            + TPGRL D +  GK NL +  +LVLDEAD +L  G+   I ++   + Q+  D    Q 
Sbjct  222  IATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI---VDQIRPD---RQT  275

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            ++ SAT               +P  V    ED + D +H  +  +          L  +H
Sbjct  276  LMWSAT---------------WPKEVRQLAEDFLKDYIHINIGALE---------LSANH  311

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE---HKMDQAIIFCRTKIDCD  520
                            N  ++      + K E  +R ++E    K ++ I+F  TK  CD
Sbjct  312  ----------------NILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCD  355

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             L +   + G         +  + +HGD+   ER   L  FK G    LI TDVA+RG+D
Sbjct  356  ELTRKMRRDG---------WPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLD  406

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            +  V +VIN   P+  ++Y+HRIGR  R+ + G A + 
Sbjct  407  VEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTF  444


 Score = 42.4 bits (98),  Expect = 0.015, Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 0/58 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            F E      +   +   ++  PT IQA+  P+ L G D++  A+TGSGKT ++ +P I
Sbjct  96   FYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI  153


>sp|Q6CT46|DBP3_KLULA ATP-dependent RNA helicase DBP3 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP3 PE=3 SV=1
Length=504

 Score = 134 bits (336),  Expect = 7e-32, Method: Compositional matrix adjust.
 Identities = 108/340 (32%), Positives = 156/340 (46%), Gaps = 57/340 (17%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            K L++ P+RELA Q  +N+       D   LR   + GGV    Q   L     +VV TP
Sbjct  165  KVLVISPTRELASQIYDNLIVL---TDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATP  220

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GRL DL+  G ++LS V +LVLDEAD +L +G+ + I ++   I Q  S  +  Q ++ +
Sbjct  221  GRLLDLIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKI---IRQTRSTSR--QTLMFT  275

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGED--SVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
            AT    +V++L+   M  P  V +   D  S    +  +V  V+P     + +  K    
Sbjct  276  ATWPK-EVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDP-----FRKEKKLLEL  329

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                H+     P  N                          D+ +IF   K +   +E+ 
Sbjct  330  LKKYHSG----PTKN--------------------------DKVLIFALYKKEASRVERN  359

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
                G         +    +HGD    +R Q L  FK G    L+ TDVAARG+DI  V 
Sbjct  360  LKYNG---------YDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVK  410

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
             VIN+T P   ++YVHRIGR GRA + G A +L  TE+EK
Sbjct  411  TVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLF-TEQEK  449


 Score = 48.9 bits (115),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 26/58 (45%), Positives = 37/58 (64%), Gaps = 2/58 (3%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            FS++  + +I + + +  +  PT IQA S P +L G DV+  AETGSGKT AF +P I
Sbjct  96   FSQVSFIDQIQKEISK--FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAI  151


>sp|Q2YUH3|CSHA_STAAB DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) OX=273036 
GN=cshA PE=3 SV=1
Length=506

 Score = 134 bits (336),  Expect = 7e-32, Method: Compositional matrix adjust.
 Identities = 99/334 (30%), Positives = 159/334 (48%), Gaps = 62/334 (19%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            ++LI+ P+RELA Q    +++F +      ++ + + GG+    Q+  L+ G  IVVGTP
Sbjct  71   QSLILAPTRELAMQVAEQLREFSR---GQGVQVVTVFGGMPIERQIKALKKGPQIVVGTP  127

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D ++   L    +  L+LDEAD +++ G+ D +  + ++IP V     + Q ++ S
Sbjct  128  GRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAV-----QRQTMLFS  182

Query  408  ATLHSFDVKKLSEKIMHFPTWVD-LKGEDSVPDTVH-HVVVPVNPKTDRLWERLGKSHIR  465
            AT+    ++ L ++ M  P  +  +  E S P     + +V    K D     L      
Sbjct  183  ATMPKA-IQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFL------  235

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
              DVH           PE+                        AI+F RTK   D L   
Sbjct  236  --DVH----------QPEL------------------------AIVFGRTKRRVDELTSA  259

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
             I +G         +    LHGD    +R + L++FK   +  L+ TDVAARG+DI GV 
Sbjct  260  LISKG---------YKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVS  310

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +V N  +P + ++Y HRIGR GRA + G+A++ V
Sbjct  311  HVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFV  344


 Score = 63.2 bits (152),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 42/64 (66%), Gaps = 0/64 (0%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           M  F E+G+     Q++E M +  PT IQ +SIP  L G D+L  A+TG+GKTGAF IP+
Sbjct  1   MQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL  60

Query  61  IQIV  64
           I+ V
Sbjct  61  IEKV  64


>sp|Q4R6M5|DDX5_MACFA Probable ATP-dependent RNA helicase DDX5 
OS=Macaca fascicularis OX=9541 GN=DDX5 PE=2 SV=1
Length=614

 Score = 135 bits (339),  Expect = 7e-32, Method: Compositional matrix adjust.
 Identities = 100/338 (30%), Positives = 156/338 (46%), Gaps = 63/338 (19%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFK-KYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            + P  L++ P+RELA+Q    ++Q   +Y    +L+   I GG     Q+  LE GV+I 
Sbjct  166  DGPICLVLAPTRELAQQ----VQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEIC  221

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            + TPGRL D +  GK NL +  +LVLDEAD +L  G+   I ++   + Q+  D    Q 
Sbjct  222  IATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI---VDQIRPD---RQT  275

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            ++ SAT               +P  V    ED + D +H  +  +          L  +H
Sbjct  276  LMWSAT---------------WPKEVRQLAEDFLKDYIHINIGALE---------LSANH  311

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE---HKMDQAIIFCRTKIDCD  520
                            N  ++      + K E  +R ++E    K ++ I+F  TK  CD
Sbjct  312  ----------------NILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCD  355

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             L +   + G         +  + +HGD+   ER   L  FK G    LI TDVA+RG+D
Sbjct  356  ELTRKMRRDG---------WPAMGIHGDKSQQERGWVLNEFKHGKAPILIATDVASRGLD  406

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            +  V +VIN   P+  ++Y+HRIGR  R+ + G A + 
Sbjct  407  VEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTF  444


 Score = 42.7 bits (99),  Expect = 0.014, Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 0/58 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            F E      +   +   ++  PT IQA+  P+ L G D++  A+TGSGKT ++ +P I
Sbjct  96   FYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI  153


>sp|Q99MJ9|DDX50_MOUSE ATP-dependent RNA helicase DDX50 OS=Mus 
musculus OX=10090 GN=Ddx50 PE=2 SV=1
Length=734

 Score = 136 bits (342),  Expect = 7e-32, Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 165/334 (49%), Gaps = 58/334 (17%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            +PK L++ P+RELA Q   + K   +     KL      GG + + Q++ + NG+DI+VG
Sbjct  208  SPKVLVLAPTRELANQVAKDFKDITR-----KLSVACFYGGTSYQSQINQIRNGIDILVG  262

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGR+ D + +G+L+LS++R +VLDE D +L  G+++ +  + ++  +  S+    Q ++
Sbjct  263  TPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDN-PQTLL  321

Query  406  CSATLHSFDVKKLSEKIMHFP-TWVDLKGE--DSVPDTVHHVVVPVNPKTDRLWERLGKS  462
             SAT   + V K+++K M      VDL G+       TV H+ +  +      W      
Sbjct  322  FSATCPQW-VYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCH------W------  368

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
                            +  P +  + +++  G             +AIIFC TK +   +
Sbjct  369  ----------------SQRPAVIGDVLQVYSGSEG----------RAIIFCETKKNVTEM  402

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
                      P  K +     CLHGD    +R+  L+ F++G  + L+ T+VAARG+DI 
Sbjct  403  -------AMNPHIKQN---AQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIP  452

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAI  616
             V  VI  + P + ++Y+HR GR GRA R G+ +
Sbjct  453  EVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICV  486


 Score = 36.2 bits (82),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 45/79 (57%), Gaps = 7/79 (9%)

Query  3    AFSEMGVMPEIAQAVEE--MDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            AFS   +  E  + ++   + +L P  IQ ++   +  G D++  A TG+GKT +F+IP+
Sbjct  135  AFSNFSISEETIKLLKGRGVTYLFP--IQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPL  192

Query  61   IQIVYETLKDQQEGKKGKT  79
            I+ +    ++Q+  KK ++
Sbjct  193  IERLQ---RNQETIKKSRS  208


>sp|B0TJ29|RHLB_SHEHH ATP-dependent RNA helicase RhlB OS=Shewanella 
halifaxensis (strain HAW-EB4) OX=458817 GN=rhlB PE=3 SV=1
Length=436

 Score = 132 bits (332),  Expect = 8e-32, Method: Compositional matrix adjust.
 Identities = 105/338 (31%), Positives = 166/338 (49%), Gaps = 57/338 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+A+I+ P+RELA Q   +     K+     L+  ++ GG     Q  VL+ GVDI++
Sbjct  83   NQPRAIIMAPTRELAIQIAKDANLLAKHTG---LKVGIVYGGEGYEVQRKVLDKGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GR+ D V  G +N+S ++ +VLDEAD +   G+   I  +  ++P    D K    +
Sbjct  140  GTTGRIIDYVRQGVINVSCIQAVVLDEADRMFDLGFIKDIRFLFRRMP----DAKSRLNM  195

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SATL S  V++L+   M+ P  V+               +  N KT +          
Sbjct  196  LFSATL-SMKVQELAYDHMNEPEKVE---------------IAPNEKTSK----------  229

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                     N +     P M  E + +L     +  ++E   ++AI+F  TK  C+ +  
Sbjct  230  ---------NIKEEIFYPSM-EEKMPLL-----LSLLEEDWPEKAIVFSNTKHSCEKVWS  274

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
            +        +  GH+     L GD    +R + LE+F KG++  L+ TDVAARG+ I  V
Sbjct  275  WL-------EGDGHRAGL--LTGDVPQKKRLRILEQFTKGEIDILVATDVAARGLHIADV  325

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             +V N  LPD+ ++YVHRIGR GRA + G+++S    E
Sbjct  326  SHVYNYDLPDDCEDYVHRIGRTGRAGQKGISVSFACEE  363


 Score = 41.2 bits (95),  Expect = 0.029, Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 0/64 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F++  +  E+ QA+ E  +   T IQA S+P++L   D+   A+TG+GKT AF +     
Sbjct  11  FADFPLHKEVHQALNEAGFEFCTPIQALSLPILLEKKDIAGQAQTGTGKTLAFLVATFNH  70

Query  64  VYET  67
           +  T
Sbjct  71  LLST  74


>sp|Q81IT9|CSHA_BACCR DEAD-box ATP-dependent RNA helicase CshA 
OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 
/ JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) 
OX=226900 GN=cshA PE=2 SV=2
Length=533

 Score = 134 bits (336),  Expect = 9e-32, Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 159/333 (48%), Gaps = 59/333 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + +++ P+RELA Q    + +  K+    ++R L I GG     Q+  L+    I+VGTP
Sbjct  72   QGIVIAPTRELAIQVGEELYKIGKH---KRVRILPIYGGQDINRQIRALKKHPHIIVGTP  128

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D ++   L L  V  +VLDEAD +L+ G+ + I  +   +P+        Q ++ S
Sbjct  129  GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH------QTLLFS  182

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+    +++++E+ M  P                                    HI+  
Sbjct  183  ATMPD-PIRRIAERFMTEP-----------------------------------QHIK--  204

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
             V AK+ T P  N  + + E  +  K +   R +     + AI+F RTK   D L +   
Sbjct  205  -VKAKEVTMP--NIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALN  261

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
             +G         ++   +HGD    +R   L +FK+G +  L+ TDVAARG+DI GV +V
Sbjct  262  LRG---------YAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHV  312

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
             N  +P + ++YVHRIGR GRA + G+A+  V 
Sbjct  313  YNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVT  345


 Score = 57.8 bits (138),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 31/74 (42%), Positives = 47/74 (64%), Gaps = 1/74 (1%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           M  F E+G+   + Q+VE M +   T IQAE+IP  L G D++  A+TG+GKT AF +P+
Sbjct  1   MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL  60

Query  61  IQIVYETLKDQQEG  74
           +  V +T K+  +G
Sbjct  61  LDKV-DTHKESVQG  73


>sp|Q0CLJ6|DED1_ASPTN ATP-dependent RNA helicase ded1 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=ded1 
PE=3 SV=1
Length=674

 Score = 135 bits (340),  Expect = 9e-32, Method: Compositional matrix adjust.
 Identities = 97/340 (29%), Positives = 151/340 (44%), Gaps = 70/340 (21%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P +LI+ P+REL  Q  +  ++F        +R  ++ GG     QL  +E G D++V T
Sbjct  274  PTSLILAPTRELVSQIFDEARKFAY---RSWVRPCVVYGGADIGSQLRQIERGCDLLVAT  330

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM--HNQIPQVTSDGKRLQVI  404
            PGRL DL+  G+++L  +++L+LDEAD +L  G+   I R+     +P V       Q +
Sbjct  331  PGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIRRIVEGEDMPHVNDR----QTL  386

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL-----  459
            + SAT               FP  + +   D + D V   V  V   ++ + +++     
Sbjct  387  MFSAT---------------FPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVED  431

Query  460  -GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
              K  +  D +H    +                                  +IF  TK  
Sbjct  432  HDKRSVLLDILHTHGTS-------------------------------GLTLIFVETKRM  460

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
             D+L  + + Q         +F    +HGDR   ER++ LE F+ G    L+ T VAA G
Sbjct  461  ADSLSDFLLNQ---------RFPATAIHGDRTQRERERALEMFRSGRCPILVATAVAASG  511

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            +DI  V +VIN  LP +  +YVHRIGR GRA   G+A + 
Sbjct  512  LDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAF  551


 Score = 48.9 bits (115),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 31/45 (69%), Gaps = 0/45 (0%)

Query  22   WLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYE  66
            +L PT +Q  SIP+++ G D++  A+TGSGKTG F  P++   ++
Sbjct  206  YLTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAFQ  250


>sp|Q73EU1|CSHA_BACC1 DEAD-box ATP-dependent RNA helicase CshA 
OS=Bacillus cereus (strain ATCC 10987 / NRS 248) OX=222523 
GN=cshA PE=3 SV=1
Length=525

 Score = 134 bits (336),  Expect = 9e-32, Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 159/333 (48%), Gaps = 59/333 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + +++ P+RELA Q    + +  K+    ++R L I GG     Q+  L+    I+VGTP
Sbjct  72   QGIVIAPTRELAIQVGEELYKIGKH---KRVRILPIYGGQDINRQIRALKKHPHIIVGTP  128

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D ++   L L  V  +VLDEAD +L+ G+ + I  +   +P+        Q ++ S
Sbjct  129  GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH------QTLLFS  182

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+    +++++E+ M  P                                    HI+  
Sbjct  183  ATMPD-PIRRIAERFMTEP-----------------------------------QHIK--  204

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
             V AK+ T P  N  + + E  +  K +   R +     + AI+F RTK   D L +   
Sbjct  205  -VKAKEVTMP--NIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALN  261

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
             +G         ++   +HGD    +R   L +FK+G +  L+ TDVAARG+DI GV +V
Sbjct  262  LRG---------YAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHV  312

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
             N  +P + ++YVHRIGR GRA + G+A+  V 
Sbjct  313  YNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVT  345


 Score = 57.8 bits (138),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 31/74 (42%), Positives = 47/74 (64%), Gaps = 1/74 (1%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           M  F E+G+   + Q+VE M +   T IQAE+IP  L G D++  A+TG+GKT AF +P+
Sbjct  1   MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL  60

Query  61  IQIVYETLKDQQEG  74
           +  V +T K+  +G
Sbjct  61  LDKV-DTHKESVQG  73


>sp|Q6FP38|DBP1_CANGA ATP-dependent RNA helicase DBP1 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP1 PE=3 SV=1
Length=604

 Score = 134 bits (338),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 154/342 (45%), Gaps = 59/342 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P AL++ P+RELA Q  +   + KKY     ++  ++ GG     Q+  ++ G +++V T
Sbjct  222  PSALVLAPTRELAIQIFD---EAKKYTYRSWVKPYVVYGGAPIGQQMRDMDRGCNLLVAT  278

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ--IPQVTSDGKRLQVI  404
            PGRL+DL+  GK++L  V++LVLDEAD +L  G+   I  +     +P V       Q +
Sbjct  279  PGRLNDLLERGKISLVNVKYLVLDEADRMLDMGFEPQIRHIVEDCDMPSVND----RQTL  334

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT               FP  +     D + D +   V  V   ++ + +++    +
Sbjct  335  MFSAT---------------FPREIQHLARDFLKDYIFLSVGRVGSTSENIQQKV----L  375

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
              +D                 S  + IL  E              ++F  TK   D L  
Sbjct  376  FVEDYDKN-------------SALLDILINEID---------GLTLVFVETKRMADQLTD  413

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
            + I Q          F    +HGDR   ER++ L  F+ G    L+ T VAARG+DI  V
Sbjct  414  FLIVQ---------NFKATAIHGDRTQAERERALHAFRNGIANILVATAVAARGLDIPNV  464

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
              VIN  LP +  +YVHRIGR GRA  +G+A S   +    +
Sbjct  465  TNVINYDLPTDIDDYVHRIGRTGRAGNVGVATSFFNSNSMNI  506


 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 20/53 (38%), Positives = 33/53 (62%), Gaps = 0/53 (0%)

Query  13   IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVY  65
            + + VE  ++  PT +Q  SIP++    D++  A+TGSGKTG F  PV+  ++
Sbjct  149  LLENVELANFSKPTPVQKYSIPIVTKNRDLMACAQTGSGKTGGFLFPVLSELF  201


>sp|Q2GUI4|DBP3_CHAGB ATP-dependent RNA helicase DBP3 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=DBP3 PE=3 SV=1
Length=566

 Score = 134 bits (337),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 166/342 (49%), Gaps = 45/342 (13%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE--NGVDIVVG  345
            +A++V P+RELA QT   +      +    L  + + GG    DQ ++L   +G DI+V 
Sbjct  261  RAVVVSPTRELAMQTHAAMSSLASLVG---LSVVCLYGGAPKDDQRALLRKNSGADIIVA  317

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQI-PQVTSDGKRLQVI  404
            TPGRL D +S G ++LS V F VLDEAD +L +G+ + I  +     P+     ++ Q +
Sbjct  318  TPGRLKDFLSEGCVSLSDVMFAVLDEADRMLDKGFEEDIKLILGSCRPR-----EKRQTL  372

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + +AT  +  V+ L+E  M  P    +       +         N  T+       +++I
Sbjct  373  MFTATWPT-SVRGLAEGFMIDPVKATIGNRTRAGEEGEG-----NGSTEL------QANI  420

Query  465  RTDD-VHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
            R +  V   D         E+  EA K              K D+ ++FC  K +   +E
Sbjct  421  RIEQKVEVVDPRGKEQRLLELLKEAQK-----------GSAKNDRILVFCLYKKEAVRVE  469

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
            Q   ++G              +HGD +  +R ++LE FK G    L+ TDVAARG+DI  
Sbjct  470  QNLERRG---------IRVCSIHGDLRQDQRTRSLESFKAGTTSVLVATDVAARGLDIPE  520

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            V  VINVT P   ++YVHRIGR GRA + G AI+L  TE +K
Sbjct  521  VKLVINVTFPLTIEDYVHRIGRTGRAGKKGKAITLF-TEHDK  561


 Score = 47.8 bits (112),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 31/48 (65%), Gaps = 0/48 (0%)

Query  22   WLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLK  69
            +  PT IQA S P  L G DV+  AETGSGKT AF++P I+ +  + K
Sbjct  201  FTAPTPIQAASWPFALSGRDVIGIAETGSGKTMAFAVPCIESLASSPK  248


>sp|Q91VN6|DDX41_MOUSE Probable ATP-dependent RNA helicase DDX41 
OS=Mus musculus OX=10090 GN=Ddx41 PE=1 SV=2
Length=622

 Score = 135 bits (339),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 101/350 (29%), Positives = 170/350 (49%), Gaps = 64/350 (18%)

Query  277  VTQTKFLP----NAPKALIVEPSRELAEQTLNNIKQFKKYI---DNPKLRELLIIGGVAA  329
            + Q K LP      P  LI+ PSRELA QT   ++ + + +    +P LR  L IGG++ 
Sbjct  244  LEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSV  303

Query  330  RDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHN  389
            ++Q+  + +GV ++V TPGRL DL+    ++L   R+L LDEAD ++  G+   I  + +
Sbjct  304  KEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFS  363

Query  390  QIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN  449
                    G+R Q ++ SAT+         +KI +F     +K     P T++       
Sbjct  364  YF-----KGQR-QTLLFSATM--------PKKIQNFAKSALVK-----PVTIN-------  397

Query  450  PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA  509
                     +G++   + DV             E   E  K++   Y +  +++      
Sbjct  398  ---------VGRAGAASLDV---------IQEVEYVKEEAKMV---YLLECLQKTP-PPV  435

Query  510  IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL  569
            +IF   K D D + +Y + +G            V +HG +   ER + +E F++G    L
Sbjct  436  LIFAEKKADVDAIHEYLLLKG---------VEAVAIHGGKDQEERTKAIEAFREGKKDVL  486

Query  570  ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            + TDVA++G+D   + +VIN  +P+E +NYVHRIGR GR+   G+A + +
Sbjct  487  VATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI  536


 Score = 49.7 bits (117),  Expect = 8e-05, Method: Compositional matrix adjust.
 Identities = 28/69 (41%), Positives = 39/69 (57%), Gaps = 0/69 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F EM     I + +++   L PT IQ + IP IL G D++  A TGSGKT  F++PV
Sbjct  180  IKSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV  239

Query  61   IQIVYETLK  69
            I    E  K
Sbjct  240  IMFCLEQEK  248


>sp|Q9V3C0|DDX41_DROME ATP-dependent RNA helicase abstrakt OS=Drosophila 
melanogaster OX=7227 GN=abs PE=1 SV=1
Length=619

 Score = 134 bits (338),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 165/345 (48%), Gaps = 66/345 (19%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDN---PKLRELLIIGGVAARDQLSVLENGVDIV  343
            P  LI+ PSRELA+QT   I+ + K++     P++R  L +GG+   + L V+  GV IV
Sbjct  254  PYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVSEALDVISRGVHIV  313

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            V TPGRL D++    L L   R+L +DEAD ++  G+ + +  + +        G+R Q 
Sbjct  314  VATPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMGFEEDVRTIFSFF-----KGQR-QT  367

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            ++ SAT+         +KI +F     +K     P T+                      
Sbjct  368  LLFSATM--------PKKIQNFARSALVK-----PVTI----------------------  392

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA---IIFCRTKIDCD  520
                     +  R GA S  + ++ ++ +K E  V  + +     A   +IF   K D D
Sbjct  393  ---------NVGRAGAASMNV-TQQVEYVKQEAKVVYLLDCLQKTAPPVLIFAEKKQDVD  442

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             + +Y + +G            V +HG +   ER + ++ ++ G    L+ TDVA++G+D
Sbjct  443  CIHEYLLLKG---------VEAVAIHGGKDQEERSRAVDAYRVGKKDVLVATDVASKGLD  493

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
               V +VIN  +PD+ +NYVHRIGR GR+   GLA +L+    E+
Sbjct  494  FPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATTLINKTTEQ  538


 Score = 43.1 bits (100),  Expect = 0.009, Method: Compositional matrix adjust.
 Identities = 20/42 (48%), Positives = 26/42 (62%), Gaps = 0/42 (0%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYE  66
            PT IQ + +P +L G D++  A TGSGKT  F +PVI    E
Sbjct  200  PTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALE  241


>sp|Q755W0|FAL1_EREGS ATP-dependent RNA helicase FAL1 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=FAL1 PE=3 SV=2
Length=398

 Score = 131 bits (329),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 155/338 (46%), Gaps = 60/338 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+RELA Q    ++    Y++   +  L   GG A +  +S +  G  ++ GTP
Sbjct  93   QALVLSPTRELAAQISQVVRNLGDYMN---VVALACTGGKALQQDISKVNKGCHVMSGTP  149

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQ--GYSDFINRMHNQIPQVTSDGKRLQVIV  405
            GR+ D++    +N   V+ LVLDEAD LLS+  G+   +  +  ++P             
Sbjct  150  GRVLDMIKRRIINTRHVKMLVLDEADELLSETLGFKQQLYDIFTKLPSSVQVVVV-----  204

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT+ S DV ++++K M  P  + +K  D V                   E + + HI 
Sbjct  205  -SATM-SKDVLEVTKKFMSDPVKILVK-RDEVS-----------------LEGIKQYHIN  244

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
             D               E W       K +          + Q +IFC TK   D L   
Sbjct  245  VD--------------KEEW-------KFDTLCDLYDSLTITQCVIFCNTKKKVDWLSHK  283

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
             IQ         + F+   +HGD K  +R + +  F+ G  R LI TDV ARGID+  V 
Sbjct  284  LIQ---------NNFAVASIHGDMKQDDRDKVMSDFRSGSSRVLISTDVWARGIDVQQVS  334

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
             VIN  LP+  +NY+HRIGR GR  R G+AI+ +  E+
Sbjct  335  LVINYDLPELLENYIHRIGRSGRFGRKGVAINFITREE  372


 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 0/70 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  M +   + + +    +  P+ IQ+ +I  I+ G DV+  A++G+GKT  F+I ++Q
Sbjct  24  TFESMKLQENLLRGIYGYGFEAPSAIQSRAITQIIRGKDVIAQAQSGTGKTATFTIGMLQ  83

Query  63  IVYETLKDQQ  72
           ++  + KD Q
Sbjct  84  VIDSSSKDLQ  93


>sp|Q63GX5|CSHA_BACCZ DEAD-box ATP-dependent RNA helicase CshA 
OS=Bacillus cereus (strain ZK / E33L) OX=288681 GN=cshA PE=3 
SV=1
Length=528

 Score = 133 bits (335),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 98/332 (30%), Positives = 159/332 (48%), Gaps = 59/332 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + +++ P+RELA Q    + +  K+    ++R L I GG     Q+  L+    I+VGTP
Sbjct  72   QGIVIAPTRELAIQVGEELYKIGKH---KRVRILPIYGGQDINRQIRALKKHPHIIVGTP  128

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D ++   L L  V  +VLDEAD +L+ G+ + I  +   +P+        Q ++ S
Sbjct  129  GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH------QTLLFS  182

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+    +++++E+ M  P                                    HI+  
Sbjct  183  ATMPD-PIRRIAERFMTEP-----------------------------------QHIK--  204

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
             V AK+ T P  N  + + E  +  K +   R +     + AI+F RTK   D L +   
Sbjct  205  -VKAKEVTMP--NIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALN  261

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
             +G         ++   +HGD    +R   L +FK+G +  L+ TDVAARG+DI GV +V
Sbjct  262  LRG---------YAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHV  312

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
             N  +P + ++YVHRIGR GRA + G+A+  V
Sbjct  313  YNFDIPQDPESYVHRIGRTGRAGKKGIAMLFV  344


 Score = 57.8 bits (138),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 31/74 (42%), Positives = 47/74 (64%), Gaps = 1/74 (1%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           M  F E+G+   + Q+VE M +   T IQAE+IP  L G D++  A+TG+GKT AF +P+
Sbjct  1   MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL  60

Query  61  IQIVYETLKDQQEG  74
           +  V +T K+  +G
Sbjct  61  LDKV-DTHKESVQG  73


>sp|Q9UJV9|DDX41_HUMAN Probable ATP-dependent RNA helicase DDX41 
OS=Homo sapiens OX=9606 GN=DDX41 PE=1 SV=2
Length=622

 Score = 134 bits (338),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 101/350 (29%), Positives = 170/350 (49%), Gaps = 64/350 (18%)

Query  277  VTQTKFLP----NAPKALIVEPSRELAEQTLNNIKQFKKYI---DNPKLRELLIIGGVAA  329
            + Q K LP      P  LI+ PSRELA QT   ++ + + +    +P LR  L IGG++ 
Sbjct  244  LEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSV  303

Query  330  RDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHN  389
            ++Q+  + +GV ++V TPGRL DL+    ++L   R+L LDEAD ++  G+   I  + +
Sbjct  304  KEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFS  363

Query  390  QIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN  449
                    G+R Q ++ SAT+         +KI +F     +K     P T++       
Sbjct  364  YF-----KGQR-QTLLFSATM--------PKKIQNFAKSALVK-----PVTIN-------  397

Query  450  PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA  509
                     +G++   + DV             E   E  K++   Y +  +++      
Sbjct  398  ---------VGRAGAASLDV---------IQEVEYVKEEAKMV---YLLECLQKTP-PPV  435

Query  510  IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL  569
            +IF   K D D + +Y + +G            V +HG +   ER + +E F++G    L
Sbjct  436  LIFAEKKADVDAIHEYLLLKG---------VEAVAIHGGKDQEERTKAIEAFREGKKDVL  486

Query  570  ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            + TDVA++G+D   + +VIN  +P+E +NYVHRIGR GR+   G+A + +
Sbjct  487  VATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI  536


 Score = 47.0 bits (110),  Expect = 7e-04, Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 0/69 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F EM     I + +++     PT IQ + IP IL G D++  A TGSGKT  F++PV
Sbjct  180  IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV  239

Query  61   IQIVYETLK  69
            I    E  K
Sbjct  240  IMFCLEQEK  248


>sp|B8CHZ1|RHLB_SHEPW ATP-dependent RNA helicase RhlB OS=Shewanella 
piezotolerans (strain WP3 / JCM 13877) OX=225849 GN=rhlB 
PE=3 SV=1
Length=437

 Score = 132 bits (331),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 165/338 (49%), Gaps = 57/338 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+A+I+ P+RELA Q   +     K+     L+  ++ GG     Q  VL+ G+DI++
Sbjct  83   NQPRAIIMAPTRELAIQIAKDANLLAKHTG---LKVGIVYGGEGYEAQRKVLDKGIDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GR+ D V  G +++S ++ +VLDEAD +   G+   I  +  ++P    D K    +
Sbjct  140  GTTGRIIDYVRQGVIDVSAIQAVVLDEADRMFDLGFIKDIRFLFRRMP----DAKSRLNM  195

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SATL S  V++L+   M+ P  V+               +  N KT +          
Sbjct  196  LFSATL-SMKVQELAYDHMNEPEKVE---------------IAPNEKTSK----------  229

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                     N +     P M  E + +L     +  ++E   ++AI+F  TK  C+ +  
Sbjct  230  ---------NIKEEIFYPSM-EEKMPLL-----LSLLEEDWPEKAIVFSNTKHSCEKVWS  274

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
            +        +  GH+     L GD    +R + LE+F  GD+  L+ TDVAARG+ I  V
Sbjct  275  WL-------EGDGHRVGL--LTGDVPQKKRLRILEQFTSGDIDVLVATDVAARGLHIADV  325

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             +V N  LPD+ ++YVHRIGR GRA + G+++S    E
Sbjct  326  SHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFACEE  363


 Score = 43.1 bits (100),  Expect = 0.008, Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 35/55 (64%), Gaps = 0/55 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSI  58
           F++  +  E+ QA+ E+ +   T IQA S+P++L   D+   A+TG+GKT AF +
Sbjct  11  FADFPLHKEVQQALNEVGFEFCTPIQALSLPILLAKKDIAGQAQTGTGKTLAFLV  65


>sp|Q6FJG1|FAL1_CANGA ATP-dependent RNA helicase FAL1 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=FAL1 PE=3 SV=1
Length=399

 Score = 131 bits (329),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 98/336 (29%), Positives = 156/336 (46%), Gaps = 61/336 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLS-VLENGVDIVVGT  346
            +AL++ P+RELA Q    +     Y++   ++   + GG   +D L  + ++G  ++ GT
Sbjct  93   QALVLSPTRELAAQIGKVVTNLGDYMN---VKAYAMTGGKTMKDDLKKIQKHGCQVISGT  149

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQ--GYSDFINRMHNQIPQVTSDGKRLQVI  404
            PGR+ D++    +    V+ LVLDEAD LLS   G+   I  +  ++P+ +      QV+
Sbjct  150  PGRVLDMIKRRLIETRHVQILVLDEADELLSDTLGFKHQIYDIFTKLPRTS------QVV  203

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            V SAT+ S ++ ++++K M+ P  + +K ++   + +    V V                
Sbjct  204  VVSATM-SPEILEITKKFMNDPVKILVKRDEITLEGIKQYYVNVEK--------------  248

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                              E W       K +          + Q +IFC +K   D L  
Sbjct  249  ------------------EEW-------KFDTLCDIYDSLTITQCVIFCNSKKKVDWLAH  283

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
                       K   F+ + +HGD K  ER + +  F+ G  R LI TDV ARGID+  V
Sbjct  284  KL---------KQSNFAVISMHGDMKQDERDRVMNEFRTGQSRVLISTDVWARGIDVQQV  334

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
              VIN  LP+  +NYVHRIGR GR  R G+AI+ + 
Sbjct  335  SLVINYDLPEITENYVHRIGRSGRFGRKGVAINFLT  370


 Score = 42.4 bits (98),  Expect = 0.013, Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 0/63 (0%)

Query  2   AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
           A F  M +   + + +    +  P+ IQ+ +I  I+ G DV+  A++G+GKT  F+I ++
Sbjct  23  ATFESMDLKEGLLRGIYSYGFEAPSAIQSRAITQIISGKDVIAQAQSGTGKTATFTIGML  82

Query  62  QIV  64
           Q +
Sbjct  83  QAI  85


>sp|Q6HPE6|CSHA_BACHK DEAD-box ATP-dependent RNA helicase CshA 
OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) OX=281309 
GN=cshA PE=3 SV=1
Length=528

 Score = 133 bits (335),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 159/333 (48%), Gaps = 59/333 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + +++ P+RELA Q    + +  K+    ++R L I GG     Q+  L+    I+VGTP
Sbjct  72   QGIVIAPTRELAIQVGEELYKIGKH---KRVRILPIYGGQDINRQIRALKKHPHIIVGTP  128

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D ++   L L  V  +VLDEAD +L+ G+ + I  +   +P+        Q ++ S
Sbjct  129  GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH------QTLLFS  182

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+    +++++E+ M  P                                    HI+  
Sbjct  183  ATMPD-PIRRIAERFMTEP-----------------------------------QHIK--  204

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
             V AK+ T P  N  + + E  +  K +   R +     + AI+F RTK   D L +   
Sbjct  205  -VKAKEVTMP--NIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALN  261

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
             +G         ++   +HGD    +R   L +FK+G +  L+ TDVAARG+DI GV +V
Sbjct  262  LRG---------YAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHV  312

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
             N  +P + ++YVHRIGR GRA + G+A+  V 
Sbjct  313  YNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVT  345


 Score = 57.8 bits (138),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 31/74 (42%), Positives = 47/74 (64%), Gaps = 1/74 (1%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           M  F E+G+   + Q+VE M +   T IQAE+IP  L G D++  A+TG+GKT AF +P+
Sbjct  1   MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL  60

Query  61  IQIVYETLKDQQEG  74
           +  V +T K+  +G
Sbjct  61  LDKV-DTHKESVQG  73


>sp|Q81VG0|CSHA_BACAN DEAD-box ATP-dependent RNA helicase CshA 
OS=Bacillus anthracis OX=1392 GN=cshA PE=3 SV=1
Length=528

 Score = 133 bits (335),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 159/333 (48%), Gaps = 59/333 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + +++ P+RELA Q    + +  K+    ++R L I GG     Q+  L+    I+VGTP
Sbjct  72   QGIVIAPTRELAIQVGEELYKIGKH---KRVRILPIYGGQDINRQIRALKKHPHIIVGTP  128

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D ++   L L  V  +VLDEAD +L+ G+ + I  +   +P+        Q ++ S
Sbjct  129  GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH------QTLLFS  182

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+    +++++E+ M  P                                    HI+  
Sbjct  183  ATMPD-PIRRIAERFMTEP-----------------------------------QHIK--  204

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
             V AK+ T P  N  + + E  +  K +   R +     + AI+F RTK   D L +   
Sbjct  205  -VKAKEVTMP--NIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALN  261

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
             +G         ++   +HGD    +R   L +FK+G +  L+ TDVAARG+DI GV +V
Sbjct  262  LRG---------YAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHV  312

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
             N  +P + ++YVHRIGR GRA + G+A+  V 
Sbjct  313  YNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVT  345


 Score = 57.8 bits (138),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 31/74 (42%), Positives = 47/74 (64%), Gaps = 1/74 (1%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           M  F E+G+   + Q+VE M +   T IQAE+IP  L G D++  A+TG+GKT AF +P+
Sbjct  1   MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL  60

Query  61  IQIVYETLKDQQEG  74
           +  V +T K+  +G
Sbjct  61  LDKV-DTHKESVQG  73


>sp|A0R8U6|CSHA_BACAH DEAD-box ATP-dependent RNA helicase CshA 
OS=Bacillus thuringiensis (strain Al Hakam) OX=412694 GN=cshA 
PE=3 SV=1
Length=528

 Score = 133 bits (335),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 159/333 (48%), Gaps = 59/333 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + +++ P+RELA Q    + +  K+    ++R L I GG     Q+  L+    I+VGTP
Sbjct  72   QGIVIAPTRELAIQVGEELYKIGKH---KRVRILPIYGGQDINRQIRALKKHPHIIVGTP  128

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D ++   L L  V  +VLDEAD +L+ G+ + I  +   +P+        Q ++ S
Sbjct  129  GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH------QTLLFS  182

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+    +++++E+ M  P                                    HI+  
Sbjct  183  ATMPD-PIRRIAERFMTEP-----------------------------------QHIK--  204

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
             V AK+ T P  N  + + E  +  K +   R +     + AI+F RTK   D L +   
Sbjct  205  -VKAKEVTMP--NIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALN  261

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
             +G         ++   +HGD    +R   L +FK+G +  L+ TDVAARG+DI GV +V
Sbjct  262  LRG---------YAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHV  312

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
             N  +P + ++YVHRIGR GRA + G+A+  V 
Sbjct  313  YNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVT  345


 Score = 57.8 bits (138),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 31/74 (42%), Positives = 47/74 (64%), Gaps = 1/74 (1%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           M  F E+G+   + Q+VE M +   T IQAE+IP  L G D++  A+TG+GKT AF +P+
Sbjct  1   MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL  60

Query  61  IQIVYETLKDQQEG  74
           +  V +T K+  +G
Sbjct  61  LDKV-DTHKESVQG  73


>sp|A3D9I5|RHLB_SHEB5 ATP-dependent RNA helicase RhlB OS=Shewanella 
baltica (strain OS155 / ATCC BAA-1091) OX=325240 GN=rhlB 
PE=3 SV=1
Length=438

 Score = 132 bits (331),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 105/341 (31%), Positives = 162/341 (48%), Gaps = 59/341 (17%)

Query  283  LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDI  342
            L N P+A+I+ P+RELA Q   +     K+     L+  ++ GG +   Q  VL+ GVDI
Sbjct  81   LINQPRAIIMAPTRELAIQIAKDAILLAKHT---HLKVGIVYGGESYDVQRKVLDQGVDI  137

Query  343  VVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            ++GT GR+ D V  G + L+ ++ +VLDEAD +   G+   I  +  ++P+     +RL 
Sbjct  138  LIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFDLGFIKDIRFLFRRMPEA---NQRLN  194

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGK  461
            ++  SATL S  V++L+   M+ P  V++  E+     +   +  P   +  RL   L +
Sbjct  195  MLF-SATL-SMKVQELAYDHMNEPVKVEIAPEEKTSKNIKEEIFYPSQEEKMRLLLTLIE  252

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
                                 E W E                    +AI+F  TK  C+ 
Sbjct  253  ---------------------EDWPE--------------------KAIVFSNTKHSCET  271

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            L  +        +  GH+     L GD    +R + LE+F  G +  L+ TDVAARG+ I
Sbjct  272  LWSWL-------EGDGHRVGL--LTGDVPQKKRIRILEQFTSGQLDILVATDVAARGLHI  322

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
              V +V N  LPD+ ++YVHRIGR GRA   G++IS    E
Sbjct  323  SDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGMSISFACEE  363


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 0/55 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSI  58
           F+++ + PE+ QA+ E  +   T IQA S+P++L   D+   A+TG+GKT AF +
Sbjct  11  FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLV  65


>sp|B8E670|RHLB_SHEB2 ATP-dependent RNA helicase RhlB OS=Shewanella 
baltica (strain OS223) OX=407976 GN=rhlB PE=3 SV=1
Length=438

 Score = 132 bits (331),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 105/341 (31%), Positives = 162/341 (48%), Gaps = 59/341 (17%)

Query  283  LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDI  342
            L N P+A+I+ P+RELA Q   +     K+     L+  ++ GG +   Q  VL+ GVDI
Sbjct  81   LINQPRAIIMAPTRELAIQIAKDAILLAKHT---HLKVGIVYGGESYDVQRKVLDQGVDI  137

Query  343  VVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            ++GT GR+ D V  G + L+ ++ +VLDEAD +   G+   I  +  ++P+     +RL 
Sbjct  138  LIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFDLGFIKDIRFLFRRMPEA---NQRLN  194

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGK  461
            ++  SATL S  V++L+   M+ P  V++  E+     +   +  P   +  RL   L +
Sbjct  195  MLF-SATL-SMKVQELAYDHMNEPVKVEIAPEEKTSKNIKEEIFYPSQEEKMRLLLTLIE  252

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
                                 E W E                    +AI+F  TK  C+ 
Sbjct  253  ---------------------EDWPE--------------------KAIVFSNTKHSCET  271

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            L  +        +  GH+     L GD    +R + LE+F  G +  L+ TDVAARG+ I
Sbjct  272  LWSWL-------EGDGHRVGL--LTGDVPQKKRIRILEQFTSGQLDILVATDVAARGLHI  322

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
              V +V N  LPD+ ++YVHRIGR GRA   G++IS    E
Sbjct  323  SDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGMSISFACEE  363


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 0/55 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSI  58
           F+++ + PE+ QA+ E  +   T IQA S+P++L   D+   A+TG+GKT AF +
Sbjct  11  FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLV  65


>sp|A9L5D5|RHLB_SHEB9 ATP-dependent RNA helicase RhlB OS=Shewanella 
baltica (strain OS195) OX=399599 GN=rhlB PE=3 SV=1
Length=438

 Score = 132 bits (331),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 105/341 (31%), Positives = 162/341 (48%), Gaps = 59/341 (17%)

Query  283  LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDI  342
            L N P+A+I+ P+RELA Q   +     K+     L+  ++ GG +   Q  VL+ GVDI
Sbjct  81   LINQPRAIIMAPTRELAIQIAKDAILLAKHT---HLKVGIVYGGESYDVQRKVLDQGVDI  137

Query  343  VVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            ++GT GR+ D V  G + L+ ++ +VLDEAD +   G+   I  +  ++P+     +RL 
Sbjct  138  LIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFDLGFIKDIRFLFRRMPEA---NQRLN  194

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGK  461
            ++  SATL S  V++L+   M+ P  V++  E+     +   +  P   +  RL   L +
Sbjct  195  MLF-SATL-SMKVQELAYDHMNEPVKVEIAPEEKTSKNIKEEIFYPSQEEKMRLLLTLIE  252

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
                                 E W E                    +AI+F  TK  C+ 
Sbjct  253  ---------------------EDWPE--------------------KAIVFSNTKHSCET  271

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            L  +        +  GH+     L GD    +R + LE+F  G +  L+ TDVAARG+ I
Sbjct  272  LWSWL-------EGDGHRVGL--LTGDVPQKKRIRILEQFTSGQLDILVATDVAARGLHI  322

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
              V +V N  LPD+ ++YVHRIGR GRA   G++IS    E
Sbjct  323  SDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGMSISFACEE  363


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 0/55 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSI  58
           F+++ + PE+ QA+ E  +   T IQA S+P++L   D+   A+TG+GKT AF +
Sbjct  11  FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLV  65


>sp|A6WTD3|RHLB_SHEB8 ATP-dependent RNA helicase RhlB OS=Shewanella 
baltica (strain OS185) OX=402882 GN=rhlB PE=3 SV=1
Length=438

 Score = 132 bits (331),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 105/341 (31%), Positives = 162/341 (48%), Gaps = 59/341 (17%)

Query  283  LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDI  342
            L N P+A+I+ P+RELA Q   +     K+     L+  ++ GG +   Q  VL+ GVDI
Sbjct  81   LINQPRAIIMAPTRELAIQIAKDAILLAKHT---HLKVGIVYGGESYDVQRKVLDQGVDI  137

Query  343  VVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            ++GT GR+ D V  G + L+ ++ +VLDEAD +   G+   I  +  ++P+     +RL 
Sbjct  138  LIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFDLGFIKDIRFLFRRMPEA---NQRLN  194

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGK  461
            ++  SATL S  V++L+   M+ P  V++  E+     +   +  P   +  RL   L +
Sbjct  195  MLF-SATL-SMKVQELAYDHMNEPVKVEIAPEEKTSKNIKEEIFYPSQEEKMRLLLTLIE  252

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
                                 E W E                    +AI+F  TK  C+ 
Sbjct  253  ---------------------EDWPE--------------------KAIVFSNTKHSCET  271

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            L  +        +  GH+     L GD    +R + LE+F  G +  L+ TDVAARG+ I
Sbjct  272  LWSWL-------EGDGHRVGL--LTGDVPQKKRIRILEQFTSGQLDILVATDVAARGLHI  322

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
              V +V N  LPD+ ++YVHRIGR GRA   G++IS    E
Sbjct  323  SDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGMSISFACEE  363


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 0/55 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSI  58
           F+++ + PE+ QA+ E  +   T IQA S+P++L   D+   A+TG+GKT AF +
Sbjct  11  FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLV  65


>sp|A1CJT5|IF4A_ASPCL ATP-dependent RNA helicase eIF4A OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / 
NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=tif1 PE=3 SV=1
Length=398

 Score = 130 bits (328),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 107/367 (29%), Positives = 171/367 (47%), Gaps = 65/367 (18%)

Query  281  KFLPN--APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            K  PN  A +ALI+ P+RELA+Q    +     ++    L     IGG   R+ +  L++
Sbjct  86   KIDPNLKACQALILAPTRELAQQIQKVVVAIGDFM---SLECHACIGGTNVREDMKALQD  142

Query  339  GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
            G  +VVGTPGR+ D++    L   Q++  +LDEAD +LS+G+++ I  +   +PQ T   
Sbjct  143  GPQVVVGTPGRVQDMIQRRVLRTDQMKLFILDEADEMLSRGFTEQIYDIFQLLPQST---  199

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER  458
               QV++ SAT+   DV +++ K M  P  + +K ++   + +    + V          
Sbjct  200  ---QVVLLSATMPQ-DVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEK--------  247

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
                                    E W   +  L   Y    I      QA+IFC T+  
Sbjct  248  ------------------------EEWK--LDTLSDLYETVTIT-----QAVIFCNTRRK  276

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
             D L                 F+   +HGD +  +R   ++ F+ G  R LI TD+ ARG
Sbjct  277  VDWLTDKL---------TARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIATDLLARG  327

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGC  638
            ID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V  +  ++   +     +  
Sbjct  328  IDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREI-----EQF  382

Query  639  YNTRLKE  645
            Y+T+++E
Sbjct  383  YSTQIEE  389


 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 38/67 (57%), Gaps = 0/67 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +F  M + PE+ + +    +  P+ IQ  +I  I+ G DV+  A++G+GKT  FSI  +Q
Sbjct  26  SFDSMDLKPELLRGIYAYGFERPSAIQQRAIMPIIKGSDVIAQAQSGTGKTATFSISALQ  85

Query  63  IVYETLK  69
            +   LK
Sbjct  86  KIDPNLK  92


>sp|O62591|IF4A_LEIMA Probable eukaryotic initiation factor 4A 
OS=Leishmania major OX=5664 GN=LmjF.01.0770 PE=3 SV=1
Length=403

 Score = 130 bits (328),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 112/364 (31%), Positives = 173/364 (48%), Gaps = 61/364 (17%)

Query  282  FLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVD  341
            F  N  + L++ P+RELA QT   I +  +++ N        +GG   +D L  L+ GV 
Sbjct  90   FRHNLIQGLVLSPTRELALQTAEVISRIGEFLSNSSKFCETFVGGTRVQDDLRKLQAGVI  149

Query  342  IVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL  401
            + VGTPGR+ D++  G L    +R LVLDEAD +LSQG++D I  +   +P      K +
Sbjct  150  VAVGTPGRVSDVIKRGALRTESLRVLVLDEADEMLSQGFADQIYEIFRFLP------KDI  203

Query  402  QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK  461
            QV + SAT+   +V +L++K M  P  + +K E                      E + +
Sbjct  204  QVALFSATMPE-EVLELTKKFMRDPVRILVKRESLT------------------LEGIKQ  244

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
              I  ++ H  D                  L   Y   +I      Q++IF  T+   D 
Sbjct  245  FFIAVEEEHKLDT-----------------LMDLYETVSIA-----QSVIFANTRRKVDW  282

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            + +         ++  H  S   +H +    +R++ +  F+ G  R L+ TD+ ARGID+
Sbjct  283  IAEKL-------NQSNHTVS--SMHAEMPKSDRERVMNTFRSGSSRVLVTTDLVARGIDV  333

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
            H V  VIN  LP  K+NY+HRIGR GR  R G+AI+ V TEK+    H   +     Y+T
Sbjct  334  HHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFV-TEKDVELLHEIEAH----YHT  388

Query  642  RLKE  645
            ++ E
Sbjct  389  QIDE  392


 Score = 43.1 bits (100),  Expect = 0.008, Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 37/62 (60%), Gaps = 0/62 (0%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           + +F +M +   + + +    +  P+ IQ  +I     GGD++  A++G+GKTGAFSI +
Sbjct  25  IPSFDDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGL  84

Query  61  IQ  62
           +Q
Sbjct  85  LQ  86


>sp|A4HRK0|IF4A_LEIIN Probable eukaryotic initiation factor 4A 
OS=Leishmania infantum OX=5671 GN=LinJ01.0780 PE=3 SV=1
Length=403

 Score = 130 bits (328),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 112/364 (31%), Positives = 173/364 (48%), Gaps = 61/364 (17%)

Query  282  FLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVD  341
            F  N  + L++ P+RELA QT   I +  +++ N        +GG   +D L  L+ GV 
Sbjct  90   FRHNLIQGLVLSPTRELALQTAEVISRIGEFLSNSSKFCETFVGGTRVQDDLRKLQAGVI  149

Query  342  IVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL  401
            + VGTPGR+ D++  G L    +R LVLDEAD +LSQG++D I  +   +P      K +
Sbjct  150  VAVGTPGRVSDVIKRGALRTESLRVLVLDEADEMLSQGFADQIYEIFRFLP------KDI  203

Query  402  QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK  461
            QV + SAT+   +V +L++K M  P  + +K E                      E + +
Sbjct  204  QVALFSATMPE-EVLELTKKFMRDPVRILVKRESLT------------------LEGIKQ  244

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
              I  ++ H  D                  L   Y   +I      Q++IF  T+   D 
Sbjct  245  FFIAVEEEHKLDT-----------------LMDLYETVSIA-----QSVIFANTRRKVDW  282

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            + +         ++  H  S   +H +    +R++ +  F+ G  R L+ TD+ ARGID+
Sbjct  283  IAEKL-------NQSNHTVS--SMHAEMPKSDRERVMNTFRSGSSRVLVTTDLVARGIDV  333

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
            H V  VIN  LP  K+NY+HRIGR GR  R G+AI+ V TEK+    H   +     Y+T
Sbjct  334  HHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFV-TEKDVELLHEIEAH----YHT  388

Query  642  RLKE  645
            ++ E
Sbjct  389  QIDE  392


 Score = 43.1 bits (100),  Expect = 0.008, Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 37/62 (60%), Gaps = 0/62 (0%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           + +F +M +   + + +    +  P+ IQ  +I     GGD++  A++G+GKTGAFSI +
Sbjct  25  IPSFDDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGL  84

Query  61  IQ  62
           +Q
Sbjct  85  LQ  86


>sp|Q0INC5|RH28_ORYSJ DEAD-box ATP-dependent RNA helicase 28 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os12g0481100 PE=2 
SV=2
Length=802

 Score = 135 bits (339),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 112/391 (29%), Positives = 178/391 (46%), Gaps = 67/391 (17%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            A + LI+ P+RELA Q  + I++  ++ D   +R  LI+GG++ + Q   L +  DIVV 
Sbjct  265  AIRVLILTPTRELAAQVHSMIEKLAQFTD---IRCCLIVGGLSTKVQEVALRSMPDIVVA  321

Query  346  TPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            TPGR+ D L ++  + L  +  L+LDEAD LL  G+S  I  +    P      +R Q +
Sbjct  322  TPGRIIDHLRNSLSVGLEDLAILILDEADRLLELGFSAEIQELIRMCP------RRRQTM  375

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT+ + ++ +L    ++ P  ++       P T+   VV +                
Sbjct  376  LFSATM-TEEINELVTLSLNKPVRLEADPSLKRPATLTEEVVRIR---------------  419

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                       R       + +  +K  K             D+ IIF  TK     L+ 
Sbjct  420  ---------RAREANQEAVLLALCLKTFK-------------DKVIIFSGTKHSAHRLKI  457

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
             F   G              LHG+    +R + LE FKK +V FLI TDVAARGIDI GV
Sbjct  458  IFGLSG---------MKAAELHGNLTQAQRLEALELFKKQEVDFLIATDVAARGIDIVGV  508

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRL-  643
              VIN + P + + Y+HR+GR  RA R G A++ V T+ ++      + +      +R+ 
Sbjct  509  RTVINFSCPRDARTYLHRVGRTARAGREGYAVTFV-TDDDRSLLKAIAKKAGSQLKSRIV  567

Query  644  --KEDGGCTIWYNEMQLLSEIEEHLNCTISQ  672
              K    C       +L+ E+E+ ++  I +
Sbjct  568  AEKPVAECA------KLIEELEDQISTIIQE  592


 Score = 55.5 bits (132),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 0/60 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F E+ +   + +A E + +  PT IQA  IPL L G D+  +A TGSGKT AFS+PV++
Sbjct  195  SFLELNLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLE  254


>sp|A0KS84|RHLB_SHESA ATP-dependent RNA helicase RhlB OS=Shewanella 
sp. (strain ANA-3) OX=94122 GN=rhlB PE=3 SV=1
Length=439

 Score = 131 bits (330),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 105/339 (31%), Positives = 161/339 (47%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+A+I+ P+RELA Q   +     K+     L+  ++ GG +   Q   L+ GVDI++
Sbjct  83   NQPRAIIMAPTRELAIQIAKDAILLAKH---SHLKVGIVYGGESYDVQRKTLDQGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GR+ D V  G +NL  ++ +VLDEAD +   G+   I  +  ++P   S  +RL ++
Sbjct  140  GTTGRIIDYVRQGIINLGGIQAVVLDEADRMFDLGFIKDIRFLFRRMP---SADQRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S  V++L+   M+ P  V++  E+     +   +  P      RL   L +  
Sbjct  197  F-SATL-SMKVQELAYDHMNEPVKVEIAPEEKTSKNIKEEIFYPSQEDKMRLLLTLIE--  252

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                               E W E                    +AI+F  TK  C+NL 
Sbjct  253  -------------------EDWPE--------------------KAIVFSNTKHSCENLW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +        +  GH+     L GD    +R + LE+F +G +  L+ TDVAARG+ I  
Sbjct  274  SWL-------EGDGHRVGL--LTGDVPQKKRIRILEQFTQGQLDILVATDVAARGLHISD  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G+++S    E
Sbjct  325  VSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEE  363


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 0/55 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSI  58
           F+++ + PE+ QA+ E  +   T IQA S+P++L   D+   A+TG+GKT AF +
Sbjct  11  FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLV  65


>sp|P19109|DDX17_DROME ATP-dependent RNA helicase p62 OS=Drosophila 
melanogaster OX=7227 GN=Rm62 PE=1 SV=3
Length=719

 Score = 134 bits (338),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 112/378 (30%), Positives = 173/378 (46%), Gaps = 65/378 (17%)

Query  255  FVALSKAPDG----YIVKS-QHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQF  309
            FV ++K   G    YI+ +  H  N Q  Q     + P AL++ P+RELA+Q      +F
Sbjct  321  FVGIAKTGSGKTLGYILPAIVHINNQQPLQRG---DGPIALVLAPTRELAQQIQQVATEF  377

Query  310  KKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVL  369
                 +  +R   + GG     Q+  L+ G +IV+ TPGRL D +S G  NL +  +LVL
Sbjct  378  GS---SSYVRNTCVFGGAPKGGQMRDLQRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVL  434

Query  370  DEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWV  429
            DEAD +L  G+   I ++   + Q+  D    Q ++ SAT    +VK+L+E  +    ++
Sbjct  435  DEADRMLDMGFEPQIRKI---VSQIRPD---RQTLMWSATWPK-EVKQLAEDFLG--NYI  485

Query  430  DLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWS--E  487
             +                               +I + ++ A  N R   +  + +S  E
Sbjct  486  QI-------------------------------NIGSLELSANHNIRQVVDVCDEFSKEE  514

Query  488  AIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHG  547
             +K L  +    +    K+   IIF  TK   DNL + FI+  G          C  +HG
Sbjct  515  KLKTLLSDIYDTSESPGKI---IIFVETKRRVDNLVR-FIRSFG--------VRCGAIHG  562

Query  548  DRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVG  607
            D+   ER   L  F+ G    L+ TDVAARG+D+ G+ YVIN   P   ++Y+HRIGR G
Sbjct  563  DKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTG  622

Query  608  RAERMGLAISLVATEKEK  625
            R+   G + +       K
Sbjct  623  RSNTKGTSFAFFTKNNAK  640


 Score = 41.2 bits (95),  Expect = 0.035, Method: Compositional matrix adjust.
 Identities = 19/58 (33%), Positives = 33/58 (57%), Gaps = 0/58 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            FSE+ +   + + +    +  PT IQA+  P+ + G + +  A+TGSGKT  + +P I
Sbjct  283  FSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAI  340


>sp|A1CX72|PRP28_NEOFI Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 
3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) 
OX=331117 GN=prp28 PE=3 SV=1
Length=796

 Score = 135 bits (339),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 96/361 (27%), Positives = 167/361 (46%), Gaps = 67/361 (19%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P A+++ P+RELA+Q     ++F + +       + I+GG +  +Q   L NG +I++
Sbjct  441  DGPYAIVLAPTRELAQQIEIEARKFTQPLG---FNVVSIVGGHSFEEQAYSLRNGAEIII  497

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG------  398
             TPGRL D +    L LSQ  ++++DEAD ++  G+ + +N++ + +P VT++       
Sbjct  498  ATPGRLVDCIERRLLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALP-VTNEKPDTEEA  556

Query  399  ---------KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN  449
                     +  Q ++ +AT+ S  V++++ K +  P  V +       DTV   V  + 
Sbjct  557  ENSAAMRSHRYRQTMMYTATMPSA-VERIARKYLRRPAIVTIGSAGEAVDTVEQRVEMIA  615

Query  450  PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA  509
             + D+  +RL        D+ +    RP                                
Sbjct  616  GE-DKRKKRLA-------DILSSGEFRP------------------------------PI  637

Query  510  IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL  569
            I+F   K +CD + +   Q G         FS V LHG +   +R+  L   + G    L
Sbjct  638  IVFVNIKRNCDAIAREIKQMG---------FSSVTLHGSKTQEQREAALASVRNGSTDVL  688

Query  570  ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            + TD+A RGID+  V  V+N  + +  ++Y HRIGR GRA + G+AI+ +  E   V Y 
Sbjct  689  VATDLAGRGIDVPDVSLVVNFNMANSIESYTHRIGRTGRAGKSGVAITFLGNEDADVMYD  748

Query  630  V  630
            +
Sbjct  749  L  749


 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 40/66 (61%), Gaps = 0/66 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M ++ E G+   + + V+++ +  PT IQ  +IP+ L   D++  A TGSGKT +F +P+
Sbjct  363  MRSWEESGLPKRLLELVDQVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPL  422

Query  61   IQIVYE  66
            +  + E
Sbjct  423  LVYISE  428


>sp|P09052|VASA1_DROME ATP-dependent RNA helicase vasa OS=Drosophila 
melanogaster OX=7227 GN=vas PE=1 SV=3
Length=661

 Score = 134 bits (337),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 95/340 (28%), Positives = 151/340 (44%), Gaps = 58/340 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+ +IV P+RELA Q  N   + +K+     L+  ++ GG + R Q   +  G  +V+ T
Sbjct  319  PQVVIVSPTRELAIQIFN---EARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIAT  375

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL D V    +     RF+VLDEAD +L  G+S+ + R+   +          Q ++ 
Sbjct  376  PGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEH----QTLMF  431

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT    ++++++ + +    +V +         V   +  VN    R            
Sbjct  432  SATFPE-EIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKR------------  478

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                               S+ I+IL            + D  I+F  TK   D L  + 
Sbjct  479  -------------------SKLIEILS----------EQADGTIVFVETKRGADFLASFL  509

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
             ++         +F    +HGDR   +R+Q L  FK G ++ LI T VA+RG+DI  + +
Sbjct  510  SEK---------EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKH  560

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
            VIN  +P +  +YVHRIGR GR    G A S    EK++ 
Sbjct  561  VINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRA  600


 Score = 47.8 bits (112),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 25/72 (35%), Positives = 41/72 (57%), Gaps = 0/72 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+   +   I   V +  + +PT IQ  SIP+I  G D++  A+TGSGKT AF +P++  
Sbjct  247  FTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSK  306

Query  64   VYETLKDQQEGK  75
            + E   + + G+
Sbjct  307  LLEDPHELELGR  318


>sp|B5FF87|RHLB_ALIFM ATP-dependent RNA helicase RhlB OS=Aliivibrio 
fischeri (strain MJ11) OX=388396 GN=rhlB PE=3 SV=1
Length=432

 Score = 131 bits (329),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 164/336 (49%), Gaps = 57/336 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+A+I+ P+RELA Q  N+ +     I +  L+  L  GG     Q  V+E GVDI++GT
Sbjct  85   PRAIIMAPTRELAIQIFNDAESL---IASTGLKAALAYGGERYEKQQQVIEQGVDILIGT  141

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
             GR+ D    G ++   ++ +VLDEAD +   G+   I  +  ++P  T   +RL ++  
Sbjct  142  TGRIIDFYKQGHIDFKMIQAVVLDEADRMFDLGFIKDIRFIFRRMPAPT---ERLNMLF-  197

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SATL S+ V++L+ + M  P                HVVV    KT          H   
Sbjct  198  SATL-SYRVQELAFEHMQEP---------------EHVVVEPEQKT---------GHRIK  232

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
            +++    N              + +L+       I+E   D+AIIF  TK  C+++  + 
Sbjct  233  EELFYPSN-----------DHKMALLQT-----LIEEEWPDRAIIFANTKHKCESVWGHL  276

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                   DK  H+     L GD    +R++ LE F +G+V  L+ TDVAARG+ I  V +
Sbjct  277  -----AADK--HRVGL--LTGDVPQKKRERILEEFTQGNVDILVATDVAARGLHIPQVTH  327

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V N  LP+E ++YVHRIGR GRA   G +IS    E
Sbjct  328  VFNFDLPNEAEDYVHRIGRTGRAGASGNSISFACEE  363


 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 19/53 (36%), Positives = 36/53 (68%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           F+++G+ P++   +    ++  T IQA+++P++L G D+   A+TG+GKT AF
Sbjct  11  FADLGLQPQVIDGLNAKGFIKCTPIQAKALPVLLAGQDIAGQAQTGTGKTLAF  63


>sp|Q9C718|RH20_ARATH DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis 
thaliana OX=3702 GN=RH20 PE=2 SV=1
Length=501

 Score = 132 bits (332),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 98/336 (29%), Positives = 154/336 (46%), Gaps = 61/336 (18%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  L++ P+RELA Q      +F     + K++   I GGV    Q+  L+ GV+IV+
Sbjct  171  DGPIVLVLAPTRELAVQIQQEASKFGS---SSKIKTTCIYGGVPKGPQVRDLQKGVEIVI  227

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D++ +   NL +V +LVLDEAD +L  G+   I ++ + I          Q +
Sbjct  228  ATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHI------RPDRQTL  281

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
              SAT    +V++LS+K ++ P  V +   D   +     +V V  ++ +          
Sbjct  282  YWSATWPK-EVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQK----------  330

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD--QAIIFCRTKIDCDNL  522
                                +++ +K+L          E  MD  + ++F  TK  CD +
Sbjct  331  --------------------YNKLVKLL----------EDIMDGSRILVFLDTKKGCDQI  360

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
             +     G         +  + +HGD+   ER   L  F+ G    +  TDVAARG+D+ 
Sbjct  361  TRQLRMDG---------WPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVK  411

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
             V YVIN   P   ++YVHRIGR GRA   G A + 
Sbjct  412  DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTF  447


 Score = 42.7 bits (99),  Expect = 0.012, Method: Compositional matrix adjust.
 Identities = 20/59 (34%), Positives = 37/59 (63%), Gaps = 0/59 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            +F ++G    + + V++  +  PT IQ++  P+ + G D++  AETGSGKT ++ +P I
Sbjct  100  SFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAI  158


>sp|Q0UAT0|FAL1_PHANO ATP-dependent RNA helicase FAL1 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=FAL1 PE=3 SV=3
Length=374

 Score = 129 bits (325),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 93/304 (31%), Positives = 140/304 (46%), Gaps = 57/304 (19%)

Query  324  IGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDF  383
            IGG    + +  L+ G  +V GTPGR+ D++    L    ++ LVLDEAD LL++G+ + 
Sbjct  103  IGGTNVGEDIRKLDYGQHVVSGTPGRVADMIRRRNLRTRNIKMLVLDEADELLNRGFREQ  162

Query  384  INRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHH  443
            I  ++  +P  T      QV+V SATL  +DV +++ K M  P  + +K ++   + +  
Sbjct  163  IYDVYRYLPPAT------QVVVVSATL-PYDVLEMTTKFMTDPVRILVKRDELTLEGLKQ  215

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
              + +                                  E W      L   Y    I  
Sbjct  216  YFIAI--------------------------------EKEEWK--FDTLCDLYDTLTIT-  240

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDK-KGHQFSCVCLHGDRKPHERKQNLERFK  562
                QA+IFC T+   D L           DK +   F+   +HGD    ER   ++ F+
Sbjct  241  ----QAVIFCNTRRKVDWL----------TDKMREANFTVSSMHGDMPQRERDSIMQDFR  286

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            + + R LI TDV ARGID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V  E
Sbjct  287  QANSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTQE  346

Query  623  KEKV  626
              ++
Sbjct  347  DVRI  350


 Score = 38.5 bits (88),  Expect = 0.18, Method: Compositional matrix adjust.
 Identities = 19/68 (28%), Positives = 35/68 (51%), Gaps = 0/68 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  M +   + + +    +  P+ +Q+ +I  +  G D +  A++G+GKT  FSI ++Q
Sbjct  26  TFEAMHLKENLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISILQ  85

Query  63  IVYETLKD  70
            V   L D
Sbjct  86  SVIMGLGD  93


>sp|Q3MSQ8|DDX4_PELLE Probable ATP-dependent RNA helicase DDX4 
OS=Pelophylax lessonae OX=45623 GN=ddx4 PE=2 SV=1
Length=724

 Score = 134 bits (337),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 95/332 (29%), Positives = 155/332 (47%), Gaps = 54/332 (16%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+A+IV P+REL  Q   + ++F        +R ++I GG      L  +  G +I+  T
Sbjct  364  PEAIIVAPTRELINQIYLDARKFSY---GTCVRPVVIYGGTQMFHSLKQISEGCNILCAT  420

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL D++   K+ L+++R+LVLDEAD +L  G+ + I  +       + + +  Q ++ 
Sbjct  421  PGRLLDVIRKEKIGLTKLRYLVLDEADRMLDMGFREDIENLLKSSGMPSKEER--QTLMF  478

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT  S  ++ L+ +I+                           K D L+  +G+     
Sbjct  479  SATFPS-SIQSLAREIL---------------------------KPDYLFVVVGQVGGAC  510

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
             DV             +M  E  +  K +  +  ++E   ++ ++F +TK   D +  + 
Sbjct  511  SDVE------------QMVIEVDEFGKKDKLMEILQEIGSERTMVFVKTKKKADFIATFL  558

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
             Q+         +     +HGDR+  ER+  L  F+ G    ++ T VAARG+DI  V Y
Sbjct  559  CQE---------KVPSTSIHGDREQKERETALRDFRTGQCPVIVATSVAARGLDIENVSY  609

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            VIN  +PD+   YVHRIGR GR    G AIS 
Sbjct  610  VINFDIPDDIDEYVHRIGRTGRCGNTGRAISF  641


 Score = 48.9 bits (115),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 23/58 (40%), Positives = 37/58 (64%), Gaps = 0/58 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            F E  +   +A+ V +  ++  T IQ  SIP+I+ G D++  A+TGSGKT AF +P++
Sbjct  288  FEEANLCDSLAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMACAQTGSGKTAAFLLPIL  345


>sp|Q5E8U5|RHLB_ALIF1 ATP-dependent RNA helicase RhlB OS=Aliivibrio 
fischeri (strain ATCC 700601 / ES114) OX=312309 GN=rhlB 
PE=3 SV=2
Length=432

 Score = 130 bits (328),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 164/336 (49%), Gaps = 57/336 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+A+I+ P+RELA Q  N+ +     I +  L+  L  GG     Q  V+E GVDI++GT
Sbjct  85   PRAIIMAPTRELAIQIFNDAESL---IASTGLKAALAYGGERYEKQQQVIEQGVDILIGT  141

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
             GR+ D    G ++   ++ +VLDEAD +   G+   I  +  ++P  T   +RL ++  
Sbjct  142  TGRIIDFYKQGHIDFKMIQAVVLDEADRMFDLGFIKDIRFIFRRMPAPT---ERLNMLF-  197

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SATL S+ V++L+ + M  P                HVVV    KT          H   
Sbjct  198  SATL-SYRVQELAFEHMQEP---------------EHVVVEPEQKT---------GHRIK  232

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
            +++    N              + +L+       I+E   D+AIIF  TK  C+++  + 
Sbjct  233  EELFYPSN-----------DHKMALLQT-----LIEEEWPDRAIIFANTKHKCESVWGHL  276

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                   DK  H+     L GD    +R++ LE F +G+V  L+ TDVAARG+ I  V +
Sbjct  277  -----AADK--HRVGL--LTGDVPQKKRERILEEFTQGNVDILVATDVAARGLHIPQVTH  327

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V N  LP+E ++YVHRIGR GRA   G +IS    E
Sbjct  328  VFNFDLPNEAEDYVHRIGRTGRAGASGNSISFACEE  363


 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 19/53 (36%), Positives = 36/53 (68%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           F+++G+ P++   +    ++  T IQA+++P++L G D+   A+TG+GKT AF
Sbjct  11  FADLGLQPQVIDGLNAKGFIKCTPIQAKALPVLLAGQDIAGQAQTGTGKTLAF  63


>sp|Q0HQL1|RHLB_SHESR ATP-dependent RNA helicase RhlB OS=Shewanella 
sp. (strain MR-7) OX=60481 GN=rhlB PE=3 SV=1
Length=439

 Score = 131 bits (329),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 104/339 (31%), Positives = 162/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+A+I+ P+RELA Q   +     K+     L+  ++ GG +   Q  VL+ GVDI++
Sbjct  83   NQPRAIIMAPTRELAIQIAKDAILLAKHT---HLKVGIVYGGESYDVQRKVLDQGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GR+ D V  G ++L+ ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRIIDYVRQGIISLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNA---DQRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S  V++L+   M+ P  V++  E+     +   +  P      RL   L +  
Sbjct  197  F-SATL-SMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQEDKIRLLLTLIE--  252

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                               E W E                    +AI+F  TK  C+NL 
Sbjct  253  -------------------EDWPE--------------------KAIVFSNTKHSCENLW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +        +  GH+     L GD    +R + LE+F +G +  L+ TDVAARG+ I  
Sbjct  274  SWL-------EGDGHRVGL--LTGDVPQKKRIRILEQFTQGQLDILVATDVAARGLHISD  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G+++S    E
Sbjct  325  VSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEE  363


 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 0/55 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSI  58
           F+++ + PE+ QA+ E  +   T IQA S+P++L   D+   A+TG+GKT AF +
Sbjct  11  FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLV  65


>sp|Q0HN76|RHLB_SHESM ATP-dependent RNA helicase RhlB OS=Shewanella 
sp. (strain MR-4) OX=60480 GN=rhlB PE=3 SV=1
Length=439

 Score = 131 bits (329),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 104/339 (31%), Positives = 162/339 (48%), Gaps = 59/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+A+I+ P+RELA Q   +     K+     L+  ++ GG +   Q  VL+ GVDI++
Sbjct  83   NQPRAIIMAPTRELAIQIAKDAILLAKHT---HLKVGIVYGGESYDVQRKVLDQGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GR+ D V  G ++L+ ++ +VLDEAD +   G+   I  +  ++P      +RL ++
Sbjct  140  GTTGRIIDYVRQGIISLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNA---DQRLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVNPKTDRLWERLGKSH  463
              SATL S  V++L+   M+ P  V++  E+     +   +  P      RL   L +  
Sbjct  197  F-SATL-SMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQEDKIRLLLTLIE--  252

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                               E W E                    +AI+F  TK  C+NL 
Sbjct  253  -------------------EDWPE--------------------KAIVFSNTKHSCENLW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +        +  GH+     L GD    +R + LE+F +G +  L+ TDVAARG+ I  
Sbjct  274  SWL-------EGDGHRVGL--LTGDVPQKKRIRILEQFTQGQLDILVATDVAARGLHISD  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +V N  LPD+ ++YVHRIGR GRA   G+++S    E
Sbjct  325  VSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEE  363


 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 0/55 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSI  58
           F+++ + PE+ QA+ E  +   T IQA S+P++L   D+   A+TG+GKT AF +
Sbjct  11  FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLV  65


>sp|Q4WPE9|PRP28_ASPFU Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / 
CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=prp28 PE=3 SV=1
Length=796

 Score = 134 bits (338),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 96/361 (27%), Positives = 167/361 (46%), Gaps = 67/361 (19%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P A+++ P+RELA+Q     ++F + +       + I+GG +  +Q   L NG +I++
Sbjct  441  DGPYAIVLAPTRELAQQIEIEARKFTQPLG---FNVVSIVGGHSFEEQAYSLRNGAEIII  497

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG------  398
             TPGRL D +    L LSQ  ++++DEAD ++  G+ + +N++ + +P VT++       
Sbjct  498  ATPGRLVDCIERRLLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALP-VTNEKPDTEEA  556

Query  399  ---------KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN  449
                     +  Q ++ +AT+ S  V++++ K +  P  V +       DTV   V  + 
Sbjct  557  ENSAAMRSHRYRQTMMYTATMPSA-VERIARKYLRRPAIVTIGSAGEAVDTVEQRVEMIA  615

Query  450  PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA  509
             + D+  +RL        D+ +    RP                                
Sbjct  616  GE-DKRKKRLA-------DILSSGEFRP------------------------------PI  637

Query  510  IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL  569
            I+F   K +CD + +   Q G         FS V LHG +   +R+  L   + G    L
Sbjct  638  IVFVNIKRNCDAIAREIKQMG---------FSSVTLHGSKTQEQREAALASVRNGSTDVL  688

Query  570  ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            + TD+A RGID+  V  V+N  + +  ++Y HRIGR GRA + G+AI+ +  E   V Y 
Sbjct  689  VATDLAGRGIDVPDVSLVVNFNMANSIESYTHRIGRTGRAGKSGVAITFLGNEDADVMYD  748

Query  630  V  630
            +
Sbjct  749  L  749


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 40/66 (61%), Gaps = 0/66 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M ++ E G+   + + V+++ +  PT IQ  +IP+ L   D++  A TGSGKT +F +P+
Sbjct  363  MRSWEESGLPKRLLELVDQVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPL  422

Query  61   IQIVYE  66
            +  + E
Sbjct  423  LVYISE  428


>sp|Q9CJS1|RHLB_PASMU ATP-dependent RNA helicase RhlB OS=Pasteurella 
multocida (strain Pm70) OX=272843 GN=rhlB PE=3 SV=1
Length=423

 Score = 130 bits (327),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 106/336 (32%), Positives = 159/336 (47%), Gaps = 57/336 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+ALI+ P+RELA Q  N+     K      L+  L  GG     QL  +E GVDI++GT
Sbjct  83   PRALILAPTRELAVQINNDAALLTK---ATGLKTGLAYGGDGYEKQLKAIEQGVDILIGT  139

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
             GR+ D V  G + L +++ +VLDEAD +   G+   I  +  + P   +   RL ++  
Sbjct  140  TGRVIDYVKQGIVRLDKIQVVVLDEADRMFDLGFIKDIRYLLRKCP---APQHRLTMLF-  195

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SATL S+ V++L+ + M+ P +V+++              P+     R+ E L   +   
Sbjct  196  SATL-SYKVRELAFEDMNDPEYVEIE--------------PLQKTGHRIKEEL--FYPSN  238

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
             D  A   T      PE                        + IIF  TK  C+++  Y 
Sbjct  239  QDKMALLLTLLEEEWPE------------------------RCIIFANTKHRCEDIWGYL  274

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                      GH+     L GD    +R   L++F +G +  L+ TDVAARG+ I  V +
Sbjct  275  A-------ADGHRVGL--LTGDVAQKKRLSLLKQFTEGHLDILVATDVAARGLHISDVSH  325

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V N  LPD++++YVHRIGR GRA   G++IS    E
Sbjct  326  VFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEE  361


 Score = 43.5 bits (101),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 4/75 (5%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           FS++ +  ++  A++E  +   T IQA S+P+ L G DV   A+TG+GKT AF    +  
Sbjct  11  FSDLPLHHQVLAALQEKGFDYCTPIQALSLPMSLAGKDVAGQAQTGTGKTMAF----LTA  66

Query  64  VYETLKDQQEGKKGK  78
            +  L  QQ  K G+
Sbjct  67  TFHHLLTQQGDKGGR  81


>sp|Q5QYF8|RHLB_IDILO ATP-dependent RNA helicase RhlB OS=Idiomarina 
loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) OX=283942 
GN=rhlB PE=3 SV=1
Length=425

 Score = 130 bits (327),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 106/338 (31%), Positives = 161/338 (48%), Gaps = 57/338 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P+ALI+ P+RELA Q  ++       I++  L+  +I GG     Q   L    DI+V
Sbjct  82   SGPRALIMAPTRELAIQIAHDADAL---IEHCGLKMGVIYGGEGYEGQKEQLAAQPDILV  138

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D       +L  +  +VLDEAD +   G+ D I  +  ++P  +   KRL ++
Sbjct  139  GTTGRLIDFYKQDLFSLKDIEVVVLDEADRMFDLGFIDDIRYLLQKMPDPS---KRLNLL  195

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
              SATL S+ V++L+ + M+ PT ++              V P+     R+ E L     
Sbjct  196  F-SATL-SYRVQELAYEHMNAPTKLE--------------VEPLQKTATRVTEELFYP--  237

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                           + PE +   + +         I+E   D+AI+F  TK  C+ +  
Sbjct  238  ---------------SKPEKFPLLLTL---------IEEDWPDKAIVFANTKHGCEKVHG  273

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
            + +          ++     L GD    +R + LE F +G + FL+ TDVAARG+ I  V
Sbjct  274  WLV---------ANEHRAGLLTGDVPQKKRLRILEDFAEGKLDFLVATDVAARGLHIPEV  324

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             +V N  LPD+ ++YVHRIGR GRA   G AISL   E
Sbjct  325  THVYNFDLPDDCEDYVHRIGRTGRAGASGAAISLACEE  362


 Score = 43.1 bits (100),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 22/53 (42%), Positives = 33/53 (62%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           F+++ + P+I QA+    +   T IQA S+P+ L   DV   A+TG+GKT AF
Sbjct  11  FADLALHPKIQQAISSAGFEYCTPIQALSLPVALSNRDVAGQAQTGTGKTLAF  63


>sp|Q1DMX8|PRP28_COCIM Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Coccidioides immitis (strain RS) OX=246410 GN=PRP28 
PE=3 SV=2
Length=820

 Score = 134 bits (337),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 168/366 (46%), Gaps = 72/366 (20%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNP-KLRELLIIGGVAARDQLSVLENGVDIV  343
            + P A+I+ P+RELA+Q  N  ++F     NP     + I+GG +  +Q   L NG +I+
Sbjct  457  DGPYAIILAPTRELAQQIENEARKFC----NPLGFNVVSIVGGHSLEEQSFSLRNGAEII  512

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP--------QVT  395
            + TPGRL D +    L LSQ  ++++DEAD ++  G+ + +N++ + +P        +  
Sbjct  513  IATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEKPDTEEA  572

Query  396  SDGKRL-----------QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
             D + +           Q ++ +AT+ S  V++++ K +  P  V +       DTV   
Sbjct  573  EDARAMSQHLGGKDRYRQTMMYTATMPSA-VERIARKYLRRPAIVTIGNIGEAVDTVEQR  631

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
            V  ++ + D+  +RL        D+ A    RP                           
Sbjct  632  VEFISGE-DKRKKRLA-------DILASGEFRP---------------------------  656

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
                 I+F   K +CD + +   Q G         +S V LHG +   +R+  L   + G
Sbjct  657  ---PIIVFVNIKRNCDAVARDIKQMG---------YSSVTLHGSKTQEQREAALASVRNG  704

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            +   L+ TD+A RGID+  V  V+N  +    ++Y HRIGR GRA + G+AI+ +  E  
Sbjct  705  NTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRTGRAGKSGVAITFLGNEDA  764

Query  625  KVWYHV  630
             V Y +
Sbjct  765  DVMYDL  770


 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 21/66 (32%), Positives = 40/66 (61%), Gaps = 0/66 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M ++ E G+   + + ++++ +  P+ IQ  +IP+ L   D++  A TGSGKT AF +P+
Sbjct  379  MRSWGESGLPKRLLEIIDKVGYKDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPL  438

Query  61   IQIVYE  66
            +  + E
Sbjct  439  LVYIAE  444


>sp|Q2HFP1|IF4A_CHAGB ATP-dependent RNA helicase eIF4A OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / 
NBRC 6347 / NRRL 1970) OX=306901 GN=TIF1 PE=3 SV=1
Length=397

 Score = 129 bits (325),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 103/358 (29%), Positives = 169/358 (47%), Gaps = 63/358 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+RELA+Q    +     +++   +     IGG + RD +  L++G  ++VGTP
Sbjct  94   QALILAPTRELAQQIQKVVIAIGDFMN---IECHACIGGTSVRDDMKALQDGPQVIVGTP  150

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L   Q++  VLDEAD +LS+G+++ I  +   +PQ T      QV++ S
Sbjct  151  GRVHDMIQRRILKTDQMKMFVLDEADEMLSRGFTEQIYDIFQLLPQST------QVVLLS  204

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+   DV +++ K M  P  + +K ++   + +    + V                   
Sbjct  205  ATMPQ-DVLEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEK-----------------  246

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W   +  L   Y    I      QA+IFC T+   D L     
Sbjct  247  ---------------EDWK--LDTLSDLYETVTIT-----QAVIFCNTRRKVDWLTDKL-  283

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
                    +   F+   +HGD    +R   ++ F+ G  R LI TD+ ARGID+  V  V
Sbjct  284  --------QARDFTVSAMHGDMDQTQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLV  335

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            IN  LP  ++NY+HRIGR GR  R G+AI+ V  +  ++   +     +  Y+T+++E
Sbjct  336  INYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREI-----EQFYSTQIEE  388


 Score = 44.3 bits (103),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 23/70 (33%), Positives = 41/70 (59%), Gaps = 0/70 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +F +M +  E+ + +    +  P+ IQ  +I  ++ G DV+  A++G+GKT  FSI V+Q
Sbjct  25  SFDDMNLKSELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQ  84

Query  63  IVYETLKDQQ  72
            +  T+K  Q
Sbjct  85  KIDPTVKSCQ  94


>sp|Q0UU86|IF4A_PHANO ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=TIF1 PE=3 SV=1
Length=396

 Score = 129 bits (325),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 105/360 (29%), Positives = 168/360 (47%), Gaps = 63/360 (18%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            A +ALI+ P+RELA+Q    +     ++D   +     IGG + RD +  L++G  +VVG
Sbjct  91   ACQALILAPTRELAQQIQKVVVAIGDFMD---VACHACIGGTSVRDDMKALQDGPQVVVG  147

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGR+ D++    L    ++  VLDEAD +LS+G+++ I  +   +PQ T      QV++
Sbjct  148  TPGRVHDMIQRRVLKTDHMKMFVLDEADEMLSRGFTEQIYDIFQLLPQST------QVVL  201

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT+   DV +++ K M  P  + +K ++   + +    + V                 
Sbjct  202  LSATMPQ-DVLEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVE----------------  244

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                             E W   +  L   Y    I      QA+IFC T+   D L   
Sbjct  245  ----------------KEDWK--LDTLSDLYETVTIT-----QAVIFCNTRRKVDWLTDK  281

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
                          F+   +HGD    +R   ++ F+ G  R LI TD+ ARGID+  V 
Sbjct  282  L---------TARDFTVSAMHGDMDQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVS  332

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
             VIN  LP  ++NY+HRIGR GR  R G+AI+ V  +  ++   +     +  Y+T+++E
Sbjct  333  LVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREI-----EQFYSTQIEE  387


 Score = 40.8 bits (94),  Expect = 0.040, Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 0/67 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +F  M +  E+ + V    +  P+ IQ  +I  ++ G DV+  A++G+GKT  FSI  +Q
Sbjct  24  SFDAMNLKAELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISTLQ  83

Query  63  IVYETLK  69
            +   +K
Sbjct  84  KIDSNVK  90


>sp|Q5BCU6|PRP28_EMENI Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 
/ CBS 112.46 / NRRL 194 / M139) OX=227321 GN=prp28 PE=3 
SV=2
Length=782

 Score = 134 bits (336),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 166/365 (45%), Gaps = 70/365 (19%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P A+++ P+RELA+Q     K+F + +       + I+GG +  +Q   L NG +I++
Sbjct  423  DGPYAIVLAPTRELAQQIEIEAKKFTEPLG---FNVVSIVGGHSFEEQAYSLRNGAEIII  479

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP------------  392
             TPGRL D +    L LSQ  ++++DEAD ++  G+ + +N++ + +P            
Sbjct  480  ATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEKPDTEEAE  539

Query  393  -------QVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
                    + S  +  Q ++ +AT+ +  V++++ K +  P  V +       DTV   V
Sbjct  540  DSSAMSRHLGSKDRYRQTMMYTATMPTA-VERIARKYLRRPAIVTIGSAGEAVDTVEQRV  598

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
              +  + D+  +RLG       ++ +  + RP                            
Sbjct  599  EMIAGE-DKRKKRLG-------EILSSGDFRP----------------------------  622

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
                I+F   K +CD + +   Q G         FS V LHG +   +R+  L   + G 
Sbjct  623  --PIIVFVNIKRNCDAIAREIKQWG---------FSSVTLHGSKTQEQREAALASVRNGS  671

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
               L+ TD+A RGID+  V  VIN  +    ++Y HRIGR GRA + G+AI+ +  E   
Sbjct  672  TDVLVATDLAGRGIDVPDVSLVINFNMATSIESYTHRIGRTGRAGKSGVAITFLGNEDAD  731

Query  626  VWYHV  630
            V Y +
Sbjct  732  VMYDL  736


 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 0/66 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M ++ E G+   + + V+ + +  PT IQ  +IP+ +   D++  A TGSGKT AF +P+
Sbjct  345  MRSWDESGLPKRLLELVDRVGYKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPL  404

Query  61   IQIVYE  66
            +  + E
Sbjct  405  LCYIAE  410


>sp|A5A6J2|DDX5_PANTR Probable ATP-dependent RNA helicase DDX5 
OS=Pan troglodytes OX=9598 GN=DDX5 PE=2 SV=1
Length=614

 Score = 132 bits (333),  Expect = 5e-31, Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 155/338 (46%), Gaps = 63/338 (19%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFK-KYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            + P  L++ P+RELA+Q    ++Q   +Y    +L+   I GG     Q+  LE GV+  
Sbjct  166  DGPICLVLAPTRELAQQ----VQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVENC  221

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            + TPGRL D +  GK NL +  +LVLDEAD +L  G+   I ++   + Q+  D    Q 
Sbjct  222  IATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI---VDQIRPD---RQT  275

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            ++ SAT               +P  V    ED + D +H  +  +          L  +H
Sbjct  276  LMWSAT---------------WPKEVRQLAEDFLKDYIHINIGALE---------LSANH  311

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE---HKMDQAIIFCRTKIDCD  520
                            N  ++      + K E  +R ++E    K ++ I+F  TK  CD
Sbjct  312  ----------------NILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCD  355

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             L +   + G         +  + +HGD+   ER   L  FK G    LI TDVA+RG+D
Sbjct  356  ELTRKMRRDG---------WPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLD  406

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            +  V +VIN   P+  ++Y+HRIGR  R+ + G A + 
Sbjct  407  VEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTF  444


 Score = 42.7 bits (99),  Expect = 0.013, Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 0/58 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            F E      +   +   ++  PT IQA+  P+ L G D++  A+TGSGKT ++ +P I
Sbjct  96   FYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI  153


>sp|P41377|IF4A2_ARATH Eukaryotic initiation factor 4A-2 OS=Arabidopsis 
thaliana OX=3702 GN=TIF4A-2 PE=1 SV=1
Length=412

 Score = 129 bits (325),  Expect = 5e-31, Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 159/344 (46%), Gaps = 60/344 (17%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+RELA+Q    ++    Y     ++    +GG + R+   +L+ GV +VVGTP
Sbjct  109  QALVLAPTRELAQQIEKVMRALGDY---QGVKVHACVGGTSVREDQRILQAGVHVVVGTP  165

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++  VLDEAD +LS+G+ D I  +   +P       ++QV V S
Sbjct  166  GRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLP------PKIQVGVFS  219

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+   +  +++ K M  P  + +K ++   + +    V V                   
Sbjct  220  ATMPP-EALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEK-----------------  261

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W   ++ L   Y   AI      Q++IF  T+   D L     
Sbjct  262  ---------------EDWK--LETLCDLYETLAIT-----QSVIFVNTRRKVDWL-----  294

Query  528  QQGGGPDK-KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                  DK +    +    HGD   + R   +  F+ G  R LI TD+ ARGID+  V  
Sbjct  295  -----TDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL  349

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
            VIN  LP + +NY+HRIGR GR  R G+AI+ V  + +++ + +
Sbjct  350  VINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDQRMLFDI  393


 Score = 33.9 bits (76),  Expect = 5.3, Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 0/60 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +F  MG+   + + +    +  P+ IQ   I     G DV+  A++G+GKT  F   V+Q
Sbjct  40  SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQ  99


>sp|Q1DHB2|PRP5_COCIM Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Coccidioides immitis (strain RS) OX=246410 GN=PRP5 
PE=3 SV=1
Length=1197

 Score = 134 bits (337),  Expect = 5e-31, Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 167/352 (47%), Gaps = 60/352 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P  LI+ P+RELA Q     K F K ++   LR +   GG   +DQ++ L+ G +I+V T
Sbjct  633  PVGLIMTPTRELATQIHKECKPFLKALN---LRAVCAYGGAPIKDQIAELKRGAEIIVCT  689

Query  347  PGRLDDLVS--TGKL-NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            PGR+ DL++  +G++ NL +V ++VLDEAD +   G+   + ++ + I          Q 
Sbjct  690  PGRMIDLLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIISNI------RPSRQT  743

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV--VVPVNPKTDRLWERLGK  461
            ++ SAT    +++ L+ K +  P  + + G   V   +  +  V P N K  RL E LG 
Sbjct  744  VLFSATFPR-NMEALARKTLTKPVEIIVGGRSVVAQEITQIVEVRPENTKFVRLLELLG-  801

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
                  ++++ DN                                 +A+IF   +   D 
Sbjct  802  ------NLYSDDNNEDA-----------------------------RALIFVDRQEAADG  826

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            L +  +++G         + C+ +HG +   +R   ++ FK G    LI T VAARG+D+
Sbjct  827  LLRDLMRKG---------YPCMSIHGGKDQVDRDSTIDDFKAGIFPVLIATSVAARGLDV  877

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
              +  VIN   P+  ++YVHR GR GRA   G A++ +  E+E+    +  +
Sbjct  878  KQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEEQERYSVDIAKA  929


 Score = 48.9 bits (115),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 44/69 (64%), Gaps = 4/69 (6%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            +S+ G+  +    + ++ +  PT IQ+++IP I+ G DV+  A+TGSGKT AF +P    
Sbjct  561  WSQCGLGVQTLDVIRKLGYEQPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLP----  616

Query  64   VYETLKDQQ  72
            ++  +KDQ+
Sbjct  617  MFRHIKDQR  625


>sp|Q4P733|DED1_USTMA ATP-dependent RNA helicase DED1 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=DED1 PE=3 SV=1
Length=672

 Score = 132 bits (333),  Expect = 6e-31, Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 156/334 (47%), Gaps = 58/334 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P  LI+ P+REL  Q  +   + +K+     ++  ++ GG     QL  +E G D++  T
Sbjct  276  PSTLILAPTRELVSQIHD---EARKFTYRSWVKPAVVYGGADIVTQLRQIERGCDLLSAT  332

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM--HNQIPQVTSDGKRLQVI  404
            PGRL DL+  G+++LS VRFLVLDEAD +L  G+   I R+     +P V       Q +
Sbjct  333  PGRLVDLMERGRISLSNVRFLVLDEADRMLDMGFEPQIRRIVEGEDMPGVMDR----QTL  388

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT               FP  + L  +D + + V   V  V   ++ + +++   ++
Sbjct  389  MFSAT---------------FPRDIQLLAKDFLKEYVFLSVGRVGSTSENITQKI--EYV  431

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
              DD                 S  + +L       ++    +   +IF  TK   D L  
Sbjct  432  EDDDKR---------------SVLLDVLA------SMPSGGL--TLIFVETKRMADMLSD  468

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
            + ++          +     +HGDR   ER++ LE F+ G    ++ T VAARG+DI  V
Sbjct  469  FLLRS---------KIGATSIHGDRTQRERERALELFRSGKTPIMVATAVAARGLDIPNV  519

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
             +V+N  LP +  +YVHRIGR GRA  +G A + 
Sbjct  520  THVVNYDLPSDVDDYVHRIGRTGRAGNVGHATAF  553


 Score = 43.9 bits (102),  Expect = 0.006, Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 0/41 (0%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVY  65
            PT +Q  SIP+I  G D++  A+TGSGKTG F  P++  ++
Sbjct  212  PTPVQKYSIPIIKLGRDLMGCAQTGSGKTGGFLFPILSALF  252


>sp|Q2UH00|PRP28_ASPOR Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) 
OX=510516 GN=prp28 PE=3 SV=1
Length=803

 Score = 133 bits (335),  Expect = 6e-31, Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 165/365 (45%), Gaps = 70/365 (19%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P A+++ P+RELA+Q     K+F + +       + I+GG +  +Q   L NG +I++
Sbjct  444  DGPYAIVLAPTRELAQQIEIEAKKFTEPLG---FNVVSIVGGHSFEEQAYSLRNGAEIII  500

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP------------  392
             TPGRL D +    L LSQ  ++++DEAD ++  G+ + +N++ + +P            
Sbjct  501  ATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEKPDSEEAE  560

Query  393  -------QVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
                    + +  +  Q ++ +AT+ +  V++++ K +  P  V +       DTV   V
Sbjct  561  NSMAMSQHIGTKDRYRQTMMYTATMPTA-VERIARKYLRRPAIVTIGSAGEAVDTVEQRV  619

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
              +  + D+  +RLG       D+ +    RP                            
Sbjct  620  EFIAGE-DKRKKRLG-------DILSSGEFRP----------------------------  643

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
                I+F   K +CD + +   Q G         FS V LHG +   +R+  L   + G 
Sbjct  644  --PIIVFVNIKRNCDAIAREIKQWG---------FSSVTLHGSKTQEQREAALASVRNGQ  692

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
               L+ TD+A RGID+  V  VIN  +    ++Y HRIGR GRA + G+AI+ +  E   
Sbjct  693  TDVLVATDLAGRGIDVPDVSLVINFNMATTIESYTHRIGRTGRAGKSGVAITFLGNEDTD  752

Query  626  VWYHV  630
            V Y +
Sbjct  753  VMYDL  757


 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 21/66 (32%), Positives = 39/66 (59%), Gaps = 0/66 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M ++ E G+   + + V ++ +  PT IQ  +IP+ +   D++  A TGSGKT +F +P+
Sbjct  366  MRSWDESGLPKRLMELVNKVGYKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTASFLLPL  425

Query  61   IQIVYE  66
            +  + E
Sbjct  426  LVYIAE  431


>sp|Q5QMN3|RH20_ORYSJ DEAD-box ATP-dependent RNA helicase 20 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os01g0197200 PE=3 
SV=2
Length=494

 Score = 130 bits (328),  Expect = 6e-31, Method: Compositional matrix adjust.
 Identities = 103/336 (31%), Positives = 154/336 (46%), Gaps = 61/336 (18%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  L++ P+RELA Q      +F     + K++   I GGV    Q+  L+ GV+IV+
Sbjct  163  DGPIVLVLAPTRELAVQIQQEATKFGA---SSKIKSTCIYGGVPKGPQVRDLQKGVEIVI  219

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D++ +   NL +V +LVLDEAD +L  G+   I ++   + Q+  D    Q +
Sbjct  220  ATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIKKI---VSQIRPD---RQTL  273

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
              SAT    +V++L+   +  P  V +  E+                       L  +H 
Sbjct  274  YWSATWPK-EVEQLARNFLFDPYKVIIGSEE-----------------------LKANHA  309

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD--QAIIFCRTKIDCDNL  522
             +  V             E+ SE+ K  K    +  + E  MD  + +IF  TK  CD +
Sbjct  310  ISQHV-------------EILSESQKYNK----LVNLLEDIMDGSRILIFMDTKKGCDQI  352

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
             +     G         +  + +HGD+   ER   L  FK G    +  TDVAARG+D+ 
Sbjct  353  TRQLRMDG---------WPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVK  403

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
             V YVIN   P   ++YVHRIGR GRA   G A + 
Sbjct  404  DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTF  439


 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 22/58 (38%), Positives = 36/58 (62%), Gaps = 0/58 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            F ++G    + Q + +  ++ PT IQ++  P+ L G D++  AETGSGKT A+ +P I
Sbjct  93   FRDVGFPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAYLLPAI  150


>sp|A5DAC8|DBP3_PICGU ATP-dependent RNA helicase DBP3 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP3 PE=3 
SV=2
Length=534

 Score = 131 bits (329),  Expect = 6e-31, Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 160/341 (47%), Gaps = 64/341 (19%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + L + P+RELA Q  +N+    K   N  L  + I GGV    Q+  ++    +VV TP
Sbjct  200  RVLCISPTRELALQIYDNLTMLTK---NCGLTCVAIYGGVPKDQQIKAVKTA-SVVVATP  255

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GRL DL++ G ++LS + +LVLDEAD +L +G+ + I  +      +    K+ Q ++ +
Sbjct  256  GRLVDLLNDGAVDLSTIDYLVLDEADRMLEKGFEEDIKNI------IGCTNKQRQTLMFT  309

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDT--VHHVVVPVNPKTDRLWERLGKSHIR  465
            AT    +V++L+   M+    V +   D +     +   V  ++P+              
Sbjct  310  ATWPK-EVRELAATFMNKAVKVSIGNRDELAANKRITQTVEVMDPRD-------------  355

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAI-IFCRTKIDCDNLEQ  524
                                       K    ++ ++++  DQ I +F   K +   +E 
Sbjct  356  ---------------------------KERRLLQLLRQYGSDQKILVFALYKKEATRVEA  388

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
               + G         F+   +HGD    +R   L+ FK+GD   L+ TDVAARG+DI  V
Sbjct  389  MLRRSG---------FNVAAIHGDLSQQQRTSALDSFKRGDSNLLLATDVAARGLDIPNV  439

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
              VIN+T P   ++YVHRIGR GRA + G+A +L  TE EK
Sbjct  440  KVVINLTFPLTVEDYVHRIGRTGRAGQTGIAHTLF-TEHEK  479


 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 22/37 (59%), Positives = 26/37 (70%), Gaps = 0/37 (0%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            PT IQ+ S P +L G DV+  AETGSGKT AF +P I
Sbjct  152  PTPIQSASWPYLLNGDDVVGVAETGSGKTFAFGVPAI  188


>sp|P38919|IF4A3_HUMAN Eukaryotic initiation factor 4A-III OS=Homo 
sapiens OX=9606 GN=EIF4A3 PE=1 SV=4
Length=411

 Score = 129 bits (324),  Expect = 7e-31, Method: Compositional matrix adjust.
 Identities = 102/358 (28%), Positives = 166/358 (46%), Gaps = 63/358 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+RELA Q    +     Y++   ++    IGG    + +  L+ G  +V GTP
Sbjct  108  QALILAPTRELAVQIQKGLLALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHVVAGTP  164

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++ LVLDEAD +L++G+ + I  ++  +P  T      QV++ S
Sbjct  165  GRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT------QVVLIS  218

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL   ++ +++ K M  P  + +K ++   + +    V V        ER         
Sbjct  219  ATL-PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV--------ER---------  260

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W      L   Y    I      QA+IFC TK   D L +   
Sbjct  261  ---------------EEWK--FDTLCDLYDTLTIT-----QAVIFCNTKRKVDWLTEKM-  297

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
                    +   F+   +HGD    ER+  ++ F+ G  R LI TDV ARG+D+  V  +
Sbjct  298  --------REANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLI  349

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            IN  LP+ ++ Y+HRIGR GR  R G+AI+ V  +  ++   +     +  Y+T++ E
Sbjct  350  INYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI-----EQYYSTQIDE  402


 Score = 43.1 bits (100),  Expect = 0.008, Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 0/60 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  MG+  ++ + +    +  P+ IQ  +I  I+ G DV+  +++G+GKT  FSI V+Q
Sbjct  39  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ  98


>sp|P0CQ80|DHH1_CRYNJ ATP-dependent RNA helicase DHH1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=DHH1 PE=3 SV=1
Length=625

 Score = 132 bits (332),  Expect = 7e-31, Method: Compositional matrix adjust.
 Identities = 105/348 (30%), Positives = 160/348 (46%), Gaps = 59/348 (17%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+RELA QT    K    +I  P L+ ++  GG   RD +  L+  V I+VGTP
Sbjct  106  QALILVPTRELALQTSQVCKTLGAHI--PNLQVMITTGGTTLRDDILRLQQPVHILVGTP  163

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ DL S G  +L++    V+DEAD LLS+ +   I +     PQ        QV++ S
Sbjct  164  GRILDLGSKGIASLNKCGVFVMDEADKLLSEDFMPVIEQTLALCPQ------ERQVMLFS  217

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT   + VK+  ++ M  P  ++L                                   D
Sbjct  218  ATF-PWTVKEFKDQHMVQPYEINL----------------------------------MD  242

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
            ++  K  T+  A   E  S+ +  L   ++     + +++Q+IIFC +    + L +   
Sbjct  243  ELTLKGVTQYYAYVEE--SQKVHCLNTLFS-----KLQINQSIIFCNSTNRVELLAKKVT  295

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
            + G         +SC   H   +   R +    F+ G  R L+C+D+  RGIDI  V  V
Sbjct  296  ELG---------YSCFYSHAKMQQAHRNRVFHDFRNGMTRNLVCSDLLTRGIDIQAVNVV  346

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRG  635
            IN   P   ++Y+HRIGR GR   +GLAISL+  E     Y + S  G
Sbjct  347  INFDFPRTAESYLHRIGRSGRFGHLGLAISLLTLEDRHNLYRIESELG  394


 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 22/69 (32%), Positives = 38/69 (55%), Gaps = 0/69 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F + G+  E+   +    +  P+ IQ ++IP+ L G D+L  A+ G+GKT +F IP +  
Sbjct  38   FEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALTGRDILARAKNGTGKTASFIIPTLNR  97

Query  64   VYETLKDQQ  72
            +  +L   Q
Sbjct  98   INTSLSHIQ  106


>sp|P0CQ81|DHH1_CRYNB ATP-dependent RNA helicase DHH1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=DHH1 PE=3 SV=1
Length=625

 Score = 132 bits (332),  Expect = 7e-31, Method: Compositional matrix adjust.
 Identities = 105/348 (30%), Positives = 160/348 (46%), Gaps = 59/348 (17%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+RELA QT    K    +I  P L+ ++  GG   RD +  L+  V I+VGTP
Sbjct  106  QALILVPTRELALQTSQVCKTLGAHI--PNLQVMITTGGTTLRDDILRLQQPVHILVGTP  163

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ DL S G  +L++    V+DEAD LLS+ +   I +     PQ        QV++ S
Sbjct  164  GRILDLGSKGIASLNKCGVFVMDEADKLLSEDFMPVIEQTLALCPQ------ERQVMLFS  217

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT   + VK+  ++ M  P  ++L                                   D
Sbjct  218  ATF-PWTVKEFKDQHMVQPYEINL----------------------------------MD  242

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
            ++  K  T+  A   E  S+ +  L   ++     + +++Q+IIFC +    + L +   
Sbjct  243  ELTLKGVTQYYAYVEE--SQKVHCLNTLFS-----KLQINQSIIFCNSTNRVELLAKKVT  295

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
            + G         +SC   H   +   R +    F+ G  R L+C+D+  RGIDI  V  V
Sbjct  296  ELG---------YSCFYSHAKMQQAHRNRVFHDFRNGMTRNLVCSDLLTRGIDIQAVNVV  346

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRG  635
            IN   P   ++Y+HRIGR GR   +GLAISL+  E     Y + S  G
Sbjct  347  INFDFPRTAESYLHRIGRSGRFGHLGLAISLLTLEDRHNLYRIESELG  394


 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 22/69 (32%), Positives = 38/69 (55%), Gaps = 0/69 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F + G+  E+   +    +  P+ IQ ++IP+ L G D+L  A+ G+GKT +F IP +  
Sbjct  38   FEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALTGRDILARAKNGTGKTASFIIPTLNR  97

Query  64   VYETLKDQQ  72
            +  +L   Q
Sbjct  98   INTSLSHIQ  106


>sp|Q4R3Q1|IF4A3_MACFA Eukaryotic initiation factor 4A-III OS=Macaca 
fascicularis OX=9541 GN=EIF4A3 PE=2 SV=3
Length=411

 Score = 129 bits (324),  Expect = 7e-31, Method: Compositional matrix adjust.
 Identities = 102/358 (28%), Positives = 166/358 (46%), Gaps = 63/358 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+RELA Q    +     Y++   ++    IGG    + +  L+ G  +V GTP
Sbjct  108  QALILAPARELAVQIQKGLLTLGDYMN---VQCHACIGGTNVGEDIRKLDYGQHVVAGTP  164

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++ LVLDEAD +L++G+ + I  ++  +P  T      QV++ S
Sbjct  165  GRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT------QVVLIS  218

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL   ++ +++ K M  P  + +K ++   + +    V V        ER         
Sbjct  219  ATL-PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV--------ER---------  260

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W      L   Y    I      QA+IFC TK   D L +   
Sbjct  261  ---------------EEWK--FDTLCDLYDTLTIT-----QAVIFCNTKRKVDWLTEKM-  297

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
                    +   F+   +HGD    ER+  ++ F+ G  R LI TDV ARG+D+  V  +
Sbjct  298  --------REANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLI  349

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            IN  LP+ ++ Y+HRIGR GR  R G+AI+ V  +  ++   +     +  Y+T++ E
Sbjct  350  INYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI-----EQYYSTQIDE  402


 Score = 43.1 bits (100),  Expect = 0.008, Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 0/60 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  MG+  ++ + +    +  P+ IQ  +I  I+ G DV+  +++G+GKT  FSI V+Q
Sbjct  39  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ  98


>sp|Q58Z64|DHH1_CRYNH ATP-dependent RNA helicase VAD1 OS=Cryptococcus 
neoformans var. grubii serotype A (strain H99 / ATCC 
208821 / CBS 10515 / FGSC 9487) OX=235443 GN=VAD1 PE=1 SV=1
Length=616

 Score = 132 bits (331),  Expect = 7e-31, Method: Compositional matrix adjust.
 Identities = 105/348 (30%), Positives = 159/348 (46%), Gaps = 59/348 (17%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+RELA QT    K    +I  P L+ ++  GG   RD +  L+  V I+VGTP
Sbjct  106  QALILVPTRELALQTSQVCKTLGAHI--PNLQVMITTGGTTLRDDILRLQQPVHILVGTP  163

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ DL S G   L++    V+DEAD LLS+ +   I +     PQ        QV++ S
Sbjct  164  GRILDLGSKGIAGLNKCGIFVMDEADKLLSEDFMPVIEQTLALCPQ------ERQVMLFS  217

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT   + VK+  ++ M  P  ++L                                   D
Sbjct  218  ATF-PWTVKEFKDQHMVQPYEINL----------------------------------MD  242

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
            ++  K  T+  A   E  S+ +  L   ++     + +++Q+IIFC +    + L +   
Sbjct  243  ELTLKGVTQYYAYVEE--SQKVHCLNTLFS-----KLQINQSIIFCNSTNRVELLAKKVT  295

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
            + G         +SC   H   +   R +    F+ G  R L+C+D+  RGIDI  V  V
Sbjct  296  ELG---------YSCFYSHAKMQQAHRNRVFHDFRNGMTRNLVCSDLLTRGIDIQAVNVV  346

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRG  635
            IN   P   ++Y+HRIGR GR   +GLAISL+  E     Y + S  G
Sbjct  347  INFDFPRTAESYLHRIGRSGRFGHLGLAISLLTLEDRHNLYRIESELG  394


 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 22/69 (32%), Positives = 38/69 (55%), Gaps = 0/69 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F + G+  E+   +    +  P+ IQ ++IP+ L G D+L  A+ G+GKT +F IP +  
Sbjct  38   FEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALTGRDILARAKNGTGKTASFIIPTLNR  97

Query  64   VYETLKDQQ  72
            +  +L   Q
Sbjct  98   INTSLSHIQ  106


>sp|Q3B8Q2|IF4A3_RAT Eukaryotic initiation factor 4A-III OS=Rattus 
norvegicus OX=10116 GN=Eif4a3 PE=1 SV=1
Length=411

 Score = 129 bits (324),  Expect = 7e-31, Method: Compositional matrix adjust.
 Identities = 102/358 (28%), Positives = 166/358 (46%), Gaps = 63/358 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+RELA Q    +     Y++   ++    IGG    + +  L+ G  +V GTP
Sbjct  108  QALILAPTRELAVQIQKGLLALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHVVAGTP  164

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++ LVLDEAD +L++G+ + I  ++  +P  T      QV++ S
Sbjct  165  GRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT------QVVLIS  218

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL   ++ +++ K M  P  + +K ++   + +    V V        ER         
Sbjct  219  ATL-PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV--------ER---------  260

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W      L   Y    I      QA+IFC TK   D L +   
Sbjct  261  ---------------EEWK--FDTLCDLYDTLTIT-----QAVIFCNTKRKVDWLTEKM-  297

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
                    +   F+   +HGD    ER+  ++ F+ G  R LI TDV ARG+D+  V  +
Sbjct  298  --------REANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLI  349

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            IN  LP+ ++ Y+HRIGR GR  R G+AI+ V  +  ++   +     +  Y+T++ E
Sbjct  350  INYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI-----EQYYSTQIDE  402


 Score = 43.1 bits (100),  Expect = 0.008, Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 0/60 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  MG+  ++ + +    +  P+ IQ  +I  I+ G DV+  +++G+GKT  FSI V+Q
Sbjct  39  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ  98


>sp|A6M931|IF4A3_PIG Eukaryotic initiation factor 4A-III OS=Sus 
scrofa OX=9823 GN=EIF4A3 PE=2 SV=1
Length=411

 Score = 129 bits (324),  Expect = 7e-31, Method: Compositional matrix adjust.
 Identities = 102/358 (28%), Positives = 166/358 (46%), Gaps = 63/358 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+RELA Q    +     Y++   ++    IGG    + +  L+ G  +V GTP
Sbjct  108  QALILAPTRELAVQIQKGLLALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHVVAGTP  164

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++ LVLDEAD +L++G+ + I  ++  +P  T      QV++ S
Sbjct  165  GRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT------QVVLIS  218

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL   ++ +++ K M  P  + +K ++   + +    V V        ER         
Sbjct  219  ATL-PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV--------ER---------  260

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W      L   Y    I      QA+IFC TK   D L +   
Sbjct  261  ---------------EEWK--FDTLCDLYDTLTIT-----QAVIFCNTKRKVDWLTEKM-  297

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
                    +   F+   +HGD    ER+  ++ F+ G  R LI TDV ARG+D+  V  +
Sbjct  298  --------REANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLI  349

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            IN  LP+ ++ Y+HRIGR GR  R G+AI+ V  +  ++   +     +  Y+T++ E
Sbjct  350  INYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI-----EQYYSTQIDE  402


 Score = 43.1 bits (100),  Expect = 0.008, Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 0/60 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  MG+  ++ + +    +  P+ IQ  +I  I+ G DV+  +++G+GKT  FSI V+Q
Sbjct  39  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ  98


>sp|Q2NL22|IF4A3_BOVIN Eukaryotic initiation factor 4A-III OS=Bos 
taurus OX=9913 GN=EIF4A3 PE=2 SV=3
Length=411

 Score = 129 bits (324),  Expect = 7e-31, Method: Compositional matrix adjust.
 Identities = 102/358 (28%), Positives = 166/358 (46%), Gaps = 63/358 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+RELA Q    +     Y++   ++    IGG    + +  L+ G  +V GTP
Sbjct  108  QALILAPTRELAVQIQKGLLALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHVVAGTP  164

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++ LVLDEAD +L++G+ + I  ++  +P  T      QV++ S
Sbjct  165  GRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT------QVVLIS  218

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL   ++ +++ K M  P  + +K ++   + +    V V        ER         
Sbjct  219  ATL-PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV--------ER---------  260

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W      L   Y    I      QA+IFC TK   D L +   
Sbjct  261  ---------------EEWK--FDTLCDLYDTLTIT-----QAVIFCNTKRKVDWLTEKM-  297

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
                    +   F+   +HGD    ER+  ++ F+ G  R LI TDV ARG+D+  V  +
Sbjct  298  --------REANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLI  349

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            IN  LP+ ++ Y+HRIGR GR  R G+AI+ V  +  ++   +     +  Y+T++ E
Sbjct  350  INYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI-----EQYYSTQIDE  402


 Score = 43.1 bits (100),  Expect = 0.008, Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 0/60 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  MG+  ++ + +    +  P+ IQ  +I  I+ G DV+  +++G+GKT  FSI V+Q
Sbjct  39  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ  98


>sp|Q91VC3|IF4A3_MOUSE Eukaryotic initiation factor 4A-III OS=Mus 
musculus OX=10090 GN=Eif4a3 PE=1 SV=3
Length=411

 Score = 129 bits (323),  Expect = 8e-31, Method: Compositional matrix adjust.
 Identities = 102/358 (28%), Positives = 166/358 (46%), Gaps = 63/358 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+RELA Q    +     Y++   ++    IGG    + +  L+ G  +V GTP
Sbjct  108  QALILAPTRELAVQIQKGLLALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHVVAGTP  164

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++ LVLDEAD +L++G+ + I  ++  +P  T      QV++ S
Sbjct  165  GRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT------QVVLIS  218

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL   ++ +++ K M  P  + +K ++   + +    V V        ER         
Sbjct  219  ATL-PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV--------ER---------  260

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W      L   Y    I      QA+IFC TK   D L +   
Sbjct  261  ---------------EEWK--FDTLCDLYDTLTIT-----QAVIFCNTKRKVDWLTEKM-  297

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
                    +   F+   +HGD    ER+  ++ F+ G  R LI TDV ARG+D+  V  +
Sbjct  298  --------REANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLI  349

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            IN  LP+ ++ Y+HRIGR GR  R G+AI+ V  +  ++   +     +  Y+T++ E
Sbjct  350  INYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI-----EQYYSTQIDE  402


 Score = 42.4 bits (98),  Expect = 0.012, Method: Compositional matrix adjust.
 Identities = 20/70 (29%), Positives = 40/70 (57%), Gaps = 0/70 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F  MG+  ++ + +    +  P+ IQ  +I  I+ G DV+  +++G+GKT  FS+ V+Q
Sbjct  39   TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQ  98

Query  63   IVYETLKDQQ  72
             +   +++ Q
Sbjct  99   CLDIQVRETQ  108


>sp|Q89AF9|DEAD_BUCBP ATP-dependent RNA helicase DeaD OS=Buchnera 
aphidicola subsp. Baizongia pistaciae (strain Bp) OX=224915 
GN=deaD PE=3 SV=1
Length=602

 Score = 132 bits (331),  Expect = 8e-31, Method: Compositional matrix adjust.
 Identities = 99/346 (29%), Positives = 154/346 (45%), Gaps = 61/346 (18%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
             P+ L++ P+RELA Q       F K +    +  L + GG     QL  L  G  I+VG
Sbjct  74   VPQILVLTPTRELAVQVAEAFSNFSKKLIGVHV--LALYGGQRYDLQLKSLRKGPQIIVG  131

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGRL D +    L+LS +  LVLDEAD +L  G+ + +  +  +IP       R Q  +
Sbjct  132  TPGRLLDHLKRRTLSLSNLHSLVLDEADEMLRMGFIEDVETIMTEIPD------RHQTAL  185

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSV-PDTVHHVVVPVNPKTDRLWERLGKSHI  464
             SAT+    ++++S + M  P  + ++   +  PD      +    KTD L         
Sbjct  186  FSATMPE-AIRRISRRFMKNPKEIRIQSNITTRPDIQQSYWMVYGKKTDAL---------  235

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                                             +R ++       IIF RTK     + +
Sbjct  236  ---------------------------------IRFLEAEDFSATIIFVRTKNATLEVSE  262

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
               + G         ++   L+GD     R+Q LE+ K G +  LI TDVAARG+D+  +
Sbjct  263  VLERYG---------YNSAALNGDMNQSLREQTLEKLKDGRLDILIATDVAARGLDVDRI  313

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
             +VIN  +P + ++YVHRIGR GRA R G A+  V   + ++  ++
Sbjct  314  SFVINYDIPMDSESYVHRIGRTGRAGRKGKALLFVENRERRLLRNI  359


 Score = 55.8 bits (133),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 0/59 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            FS  G+   I  A+ ++ ++ P+ IQA  IP ++ G DVL  A+TGSGKT AF++P++
Sbjct  7   TFSSFGLNSCIITALNDIGYVQPSPIQAACIPYLIKGKDVLGMAQTGSGKTAAFALPLL  65


>sp|Q7RV88|IF4A_NEUCR ATP-dependent RNA helicase eIF4A OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=tif-1 PE=3 SV=2
Length=397

 Score = 128 bits (322),  Expect = 8e-31, Method: Compositional matrix adjust.
 Identities = 104/360 (29%), Positives = 168/360 (47%), Gaps = 63/360 (18%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            A +ALI+ P+RELA+Q    +     +++   +     IGG + RD +  L++G  +VVG
Sbjct  92   ACQALILAPTRELAQQIQKVVVAIGDFMN---IECHACIGGTSVRDDMKALQDGPQVVVG  148

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGR+ D++    L    ++  VLDEAD +LS+G+++ I  +   +PQ T      QV++
Sbjct  149  TPGRVHDMIQRRFLKTDSMKMFVLDEADEMLSRGFTEQIYDIFQLLPQST------QVVL  202

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT+   DV +++ K M  P  + +K ++   + +    + V                 
Sbjct  203  LSATMPQ-DVLEVTTKFMREPVRILVKKDELTLEGIKQFYIAVEK---------------  246

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                             E W   +  L   Y    I      QA+IFC T+   D L   
Sbjct  247  -----------------EEWK--LDTLSDLYETVTIT-----QAVIFCNTRRKVDWLTDK  282

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
                          F+   +HGD    +R   ++ F+ G  R LI TD+ ARGID+  V 
Sbjct  283  L---------TARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVS  333

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
             VIN  LP  ++NY+HRIGR GR  R G+AI+ V  +  ++   +     +  Y+T+++E
Sbjct  334  LVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREI-----EQFYSTQIEE  388


 Score = 48.9 bits (115),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 24/67 (36%), Positives = 41/67 (61%), Gaps = 0/67 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +F EM + PE+ + +    +  P+ IQ  +I  ++ G DV+  A++G+GKT  FSI V+Q
Sbjct  25  SFDEMNLKPELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQ  84

Query  63  IVYETLK  69
            +  +LK
Sbjct  85  KIDPSLK  91


>sp|A7EGL7|IF4A_SCLS1 ATP-dependent RNA helicase eIF4A OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=tif1 PE=3 SV=1
Length=398

 Score = 128 bits (322),  Expect = 9e-31, Method: Compositional matrix adjust.
 Identities = 110/367 (30%), Positives = 172/367 (47%), Gaps = 65/367 (18%)

Query  281  KFLPNAPK--ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            K  PN  +  ALI+ P+RELA+Q    +     +++   +     IGG + RD +  L++
Sbjct  86   KLDPNVKQCQALILAPTRELAQQIQKVVVAIGDFMN---VECHACIGGTSVRDDMKALQD  142

Query  339  GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
            G  +VVGTPGR+ D++    L    ++  VLDEAD +LS+G+++ I  +   +PQ T   
Sbjct  143  GPQVVVGTPGRVHDMIQRRFLKTDSMKMFVLDEADEMLSRGFTEQIYDIFQLLPQST---  199

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER  458
               QV++ SAT+   DV +++ K M  P  + +K                  K +   E 
Sbjct  200  ---QVVLLSATMPQ-DVLEVTTKFMRDPVRILVK------------------KAELTLEG  237

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
            + + +I              A   E W   +  L   Y    I      QA+IFC T+  
Sbjct  238  IKQFYI--------------AVEKEDWK--LDTLSDLYETVTIT-----QAVIFCNTRRK  276

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
             D L                 F+   +HGD    +R   ++ F+ G  R LI TD+ ARG
Sbjct  277  VDWLTDKL---------TARDFTVSAMHGDMDQGQRDLIMKEFRSGSSRVLIATDLLARG  327

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGC  638
            ID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V  E  ++   +     +  
Sbjct  328  IDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTAEDVRMMREI-----EQF  382

Query  639  YNTRLKE  645
            Y+T+++E
Sbjct  383  YSTQIEE  389


 Score = 45.4 bits (106),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 22/60 (37%), Positives = 36/60 (60%), Gaps = 0/60 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +F  M + PE+ + V    +  P+ IQ  +I  ++ G DV+  A++G+GKT  FSI V+Q
Sbjct  26  SFDTMNLKPELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQ  85


>sp|A2QEN5|IF4A_ASPNC ATP-dependent RNA helicase eIF4A OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=tif1 PE=3 SV=1
Length=398

 Score = 128 bits (322),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 105/360 (29%), Positives = 167/360 (46%), Gaps = 63/360 (18%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            A +ALIV P+RELA+Q    +     +++   +     IGG   RD ++ L  G  +VVG
Sbjct  93   ACQALIVAPTRELAQQIQKVVVAIGDFMN---IECHACIGGTNVRDDMNALRAGPQVVVG  149

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGR+ D++    L   Q++  +LDEAD +LS+G+++ I  +   +PQ T      QV +
Sbjct  150  TPGRIHDMIERRVLKTDQMKLFILDEADEMLSRGFTEQIYDIFQLLPQST------QVTL  203

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT+   DV +++ K M  P  + +K ++   + +    + V                 
Sbjct  204  LSATMPQ-DVLEVTTKFMRDPIRILVKKQELTLEGIKQFYIAVEK---------------  247

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                             E W   +  L   Y    I      QA+IFC T+   D L   
Sbjct  248  -----------------EEWK--LDTLSDLYETVTIT-----QAVIFCNTRRKVDWLTDK  283

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
                          F+   +HGD +  +R   ++ F+ G  R LI TD+ ARGID+  V 
Sbjct  284  L---------TARDFTVSAMHGDMEQGQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVS  334

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
             VIN  LP  ++NY+HRIGR GR  R G+AI+ V  +  ++   +     +  Y+T+++E
Sbjct  335  LVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREI-----EQFYSTQIEE  389


 Score = 47.4 bits (111),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 24/67 (36%), Positives = 39/67 (58%), Gaps = 0/67 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +F  M + PE+ + V    +  P+ IQ  +I  I+ G DV+  A++G+GKT  FSI  +Q
Sbjct  26  SFDSMDLKPELLRGVYAYGFERPSAIQQRAIKPIIAGHDVIAQAQSGTGKTATFSISALQ  85

Query  63  IVYETLK  69
            + + LK
Sbjct  86  KIDQELK  92


>sp|Q6CDV4|IF4A_YARLI ATP-dependent RNA helicase eIF4A OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=TIF1 
PE=3 SV=1
Length=395

 Score = 128 bits (322),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 98/336 (29%), Positives = 161/336 (48%), Gaps = 58/336 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+ALI+ P+RELA Q    +  F +Y+   K+     IGG +  + + V++ GV ++VGT
Sbjct  91   PQALIIAPTRELAHQIQKVVLAFGEYM---KIECHACIGGTSVAEDIRVIQEGVHVIVGT  147

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGR+ D++    L    ++  +LDEAD +LS+ + D I  +   +P+ T      Q ++ 
Sbjct  148  PGRIHDMIERRILKTDLIKMFILDEADEMLSREFKDPIYDIFTTLPETT------QTVLL  201

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT+ + +V  ++ K M  P  + +K ++   + +    + V                  
Sbjct  202  SATMPA-EVLDITGKFMRDPVRILVKKDELTLEGIKQFYIDV------------------  242

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                            E  S   ++L   Y     +   + QA+IFC T+   D L Q  
Sbjct  243  ----------------EQESYKFEVLCDLY-----ETINVSQAVIFCNTRRKVDYLTQAL  281

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
             +           F+   +HG+ +  +R   ++ F+ G  R LI TD+ ARGID+  V  
Sbjct  282  TEA---------DFTVSSMHGETEQSQRDVIMKAFRTGSSRILITTDLLARGIDVQQVSL  332

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            VIN  LP  ++NY+HRIGR GR  R G+AI+ V +E
Sbjct  333  VINFDLPSNRENYIHRIGRGGRFGRKGVAINFVTSE  368


 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 23/72 (32%), Positives = 42/72 (58%), Gaps = 0/72 (0%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           + +F ++G+  E+ + +    +  P+ IQ  +I  ++ G DVL  A++G+GKT  FSI  
Sbjct  21  VTSFDDLGLKDELLRGIYGYGFENPSSIQQRAILPVIKGNDVLAQAQSGTGKTATFSISA  80

Query  61  IQIVYETLKDQQ  72
           +Q + E +K  Q
Sbjct  81  LQNIDEKIKKPQ  92


>sp|A5UDI1|RHLB_HAEIE ATP-dependent RNA helicase RhlB OS=Haemophilus 
influenzae (strain PittEE) OX=374930 GN=rhlB PE=3 SV=1
Length=415

 Score = 129 bits (323),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 103/336 (31%), Positives = 163/336 (49%), Gaps = 57/336 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+ALI+  +RELA Q  N+ +   K      L+  L  GG     QL  +E GVDI++GT
Sbjct  84   PRALILASTRELAVQISNDAEFLAKAC---GLKTALAYGGDGYDKQLQAIERGVDILIGT  140

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
             GR+ D V  G + L +++ +VLDEAD +   G   FI  +   + +  +   RL ++  
Sbjct  141  TGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLG---FIRDIRYLLRKCPTPQVRLTMLF-  196

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SATL S+ V++L+ + M+ P +++++ E     T H +                      
Sbjct  197  SATL-SYKVRELAFEDMNDPEYIEIEPEQK---TGHRI----------------------  230

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                 K+     +N  +M +  + +++ E+  R I         +F  TK  C+ +  Y 
Sbjct  231  -----KEELFYPSNQDKM-ALLLTLMEDEWPERCI---------VFANTKHRCEEIWGYL  275

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                      GH+     L GD    +R   L++F  GD+  L+ TDVAARG+ I  V +
Sbjct  276  A-------ADGHRVGL--LTGDVAQKKRLSLLKQFTDGDLDILVATDVAARGLHISDVTH  326

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V N  LPD++++YVHRIGR GRA   G++IS    E
Sbjct  327  VFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEE  362


 Score = 40.4 bits (93),  Expect = 0.057, Method: Compositional matrix adjust.
 Identities = 21/53 (40%), Positives = 32/53 (60%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS++ + P +   + +  +   T IQA S+P+ L G DV   A+TG+GKT AF
Sbjct  11  FSDLSLHPIVRDTLAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAF  63


>sp|A1SZG4|RHLB_PSYIN ATP-dependent RNA helicase RhlB OS=Psychromonas 
ingrahamii (strain DSM 17664 / CCUG 51855 / 37) OX=357804 
GN=rhlB PE=3 SV=1
Length=418

 Score = 128 bits (322),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 108/339 (32%), Positives = 162/339 (48%), Gaps = 58/339 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+A+I+ P+RELA Q   +        +   LR  L  GG     Q + LE GVDI++
Sbjct  83   NQPRAIILAPTRELAIQIHKDAMVLASMSN---LRLGLAYGGEKVEIQRTKLEKGVDILI  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GR  D V  G +++  ++ +VLDEAD +   G+   I  +  ++P+  S   RL ++
Sbjct  140  GTTGRTIDFVKQGVIDMGSIQSVVLDEADRMFDLGFIKDIRYLFRRMPEAKS---RLNML  196

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
              SATL S  V++L+ + M+ P  + ++ E         V+  VN  T+ L+    +  I
Sbjct  197  F-SATL-SHKVQELAFEHMNDPESIQIEPE---------VMTSVN-ITEELFYPSNQDKI  244

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                                             +  I+E   D+AI+F  TK  C+ +  
Sbjct  245  LL------------------------------LLSLIEEDWPDKAIVFANTKHTCEKVWG  274

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
            Y    G              L GD   ++R + L++F  G++  L+ TDVAARG+ I  V
Sbjct  275  YLAGDG---------LRTGLLTGDVPQNKRLKILQQFTDGEIDILVATDVAARGLHIPKV  325

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
             +V N  LPD+ ++YVHRIGR GRA   GLAIS  A EK
Sbjct  326  SHVFNFDLPDDCEDYVHRIGRTGRAGEKGLAISF-ACEK  363


 Score = 35.8 bits (81),  Expect = 1.5, Method: Compositional matrix adjust.
 Identities = 19/58 (33%), Positives = 33/58 (57%), Gaps = 1/58 (2%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
           F+++ +   +   +    +   T IQA S+P+ L G D+   A+TG+GKT AF +P +
Sbjct  11  FADLPLEKSLISGLTSQGYEYCTPIQALSLPITLTGKDIAGQAQTGTGKTLAF-LPAV  67


>sp|B5FZY7|IF4A3_TAEGU Eukaryotic initiation factor 4A-III OS=Taeniopygia 
guttata OX=59729 GN=EIF4A3 PE=2 SV=1
Length=410

 Score = 128 bits (322),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 102/358 (28%), Positives = 166/358 (46%), Gaps = 63/358 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+RELA Q    +     Y++   ++    IGG    + +  L+ G  +V GTP
Sbjct  107  QALILAPTRELAVQIQKGLLALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHVVAGTP  163

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++ LVLDEAD +L++G+ + I  ++  +P  T      QV++ S
Sbjct  164  GRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT------QVVLIS  217

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL   ++ +++ K M  P  + +K ++   + +    V V        ER         
Sbjct  218  ATL-PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV--------ER---------  259

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W      L   Y    I      QA+IFC TK   D L +   
Sbjct  260  ---------------EEWK--FDTLCDLYDTLTIT-----QAVIFCNTKRKVDWLTEKM-  296

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
                    +   F+   +HGD    ER+  ++ F+ G  R LI TDV ARG+D+  V  +
Sbjct  297  --------REANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLI  348

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            IN  LP+ ++ Y+HRIGR GR  R G+AI+ V  +  ++   +     +  Y+T++ E
Sbjct  349  INYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI-----EQYYSTQIDE  401


 Score = 43.1 bits (100),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 0/60 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  MG+  ++ + +    +  P+ IQ  +I  I+ G DV+  +++G+GKT  FSI V+Q
Sbjct  38  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ  97


>sp|A4RK80|PRP28_PYRO7 Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 
/ FGSC 8958) OX=242507 GN=PRP28 PE=3 SV=1
Length=674

 Score = 131 bits (330),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 105/375 (28%), Positives = 168/375 (45%), Gaps = 75/375 (20%)

Query  276  QVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLS-  334
            +VT+T+     P ALI+ P+RELA Q    + +F   +       + +IG     ++ + 
Sbjct  327  EVTKTE----GPYALILAPTRELATQIQAEVIKFATRMG---FTVVCLIGNKRTIEEDAF  379

Query  335  VLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ-  393
             L NG +I+V TPGRL D +    L LSQ  ++VLDEAD ++  G+ D I+++   +P  
Sbjct  380  ALRNGAEIIVATPGRLVDCLERHLLVLSQCSYVVLDEADRMVDGGFEDSIHKILAALPPS  439

Query  394  ------------------VTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED  435
                              +T + +  Q ++ SAT+    V+++++  +  P  V +    
Sbjct  440  NGKPDDRDAEDPNIMSKFLTPNLRYRQTVMYSATMPP-SVERIAKNYLKHPAMVTIGTIG  498

Query  436  SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGE  495
               DTV             +W            V ++D  R            ++ +   
Sbjct  499  EAVDTVEQQA---------MW------------VVSEDERR----------NKLRAMLNT  527

Query  496  YAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERK  555
            Y    +        I+F  TK +CD + +         D K   FS V LHG++   +R+
Sbjct  528  YGTGKL-------VIVFVNTKSNCDAVAK---------DLKSSSFSAVTLHGNKTQDQRE  571

Query  556  QNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLA  615
              L+ F+ G    L+ TDVAARG+DI  V  VIN  +    + Y HRIGR GRA + G+A
Sbjct  572  AALQSFRDGRTNVLVATDVAARGLDIPDVSLVINFNMAGTIEVYTHRIGRTGRAGKEGMA  631

Query  616  ISLVATEKEKVWYHV  630
            I+    E   V YH+
Sbjct  632  ITFCGPEDHGVLYHL  646


 Score = 41.2 bits (95),  Expect = 0.036, Method: Compositional matrix adjust.
 Identities = 19/62 (31%), Positives = 38/62 (61%), Gaps = 1/62 (2%)

Query  4    FSEMGVMPEIAQ-AVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F E   +P + +  ++++ +  PT +Q  +IP+ L   D++  ++TGSGKT AF +P++ 
Sbjct  258  FWEESNLPHVLKDTIKQVGYTEPTPVQRAAIPIALQCRDLIGISKTGSGKTAAFVLPMLS  317

Query  63   IV  64
             +
Sbjct  318  YI  319


>sp|Q5ZM36|IF4A3_CHICK Eukaryotic initiation factor 4A-III OS=Gallus 
gallus OX=9031 GN=EIF4A3 PE=2 SV=1
Length=412

 Score = 128 bits (321),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 102/358 (28%), Positives = 166/358 (46%), Gaps = 63/358 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+RELA Q    +     Y++   ++    IGG    + +  L+ G  +V GTP
Sbjct  109  QALILAPTRELAVQIQKGLLALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHVVAGTP  165

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++ LVLDEAD +L++G+ + I  ++  +P  T      QV++ S
Sbjct  166  GRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT------QVVLIS  219

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL   ++ +++ K M  P  + +K ++   + +    V V        ER         
Sbjct  220  ATL-PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV--------ER---------  261

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W      L   Y    I      QA+IFC TK   D L +   
Sbjct  262  ---------------EEWK--FDTLCDLYDTLTIT-----QAVIFCNTKRKVDWLTEKM-  298

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
                    +   F+   +HGD    ER+  ++ F+ G  R LI TDV ARG+D+  V  +
Sbjct  299  --------REANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLI  350

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            IN  LP+ ++ Y+HRIGR GR  R G+AI+ V  +  ++   +     +  Y+T++ E
Sbjct  351  INYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI-----EQYYSTQIDE  403


 Score = 43.1 bits (100),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 0/60 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  MG+  ++ + +    +  P+ IQ  +I  I+ G DV+  +++G+GKT  FSI V+Q
Sbjct  40  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ  99


>sp|A1D373|PRP5_NEOFI Pre-mRNA-processing ATP-dependent RNA helicase 
prp5 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 
3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) 
OX=331117 GN=prp5 PE=3 SV=1
Length=1193

 Score = 132 bits (333),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 169/353 (48%), Gaps = 62/353 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P  LI+ P+RELA Q   + K F K ++   LR +   GG   +DQ++ L+ G +IVV T
Sbjct  631  PIGLIMTPTRELATQIHKDCKPFLKALN---LRAVCAYGGAPIKDQIAELKRGAEIVVCT  687

Query  347  PGRLDDLVST--GKL-NLSQVRFLVLDEADGLLSQGYSDFINR-MHNQIPQVTSDGKRLQ  402
            PGR+ DL++   G++ NL +V ++VLDEAD +   G+   + + M N  P         Q
Sbjct  688  PGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPD-------RQ  740

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTD--RLWERLG  460
             ++ SAT    +++ L+ K +  P  + + G+  V   +  +V   N  T   RL E LG
Sbjct  741  TVLFSATFPR-NMEALARKSLTKPIEIVVGGKSVVAPEITQIVEVRNEDTKFVRLLEILG  799

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
              ++ +DD  A ++ R                                A+IF   +   D
Sbjct  800  --NLYSDD--ANEDAR--------------------------------ALIFVDRQEAAD  823

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             L +  +++G         + C+ +HG +   +R   +E FK G    LI T VAARG+D
Sbjct  824  TLLRELMRKG---------YPCMSIHGGKDQIDRDSTIEDFKAGIFPILIATSVAARGLD  874

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
            +  +  V+N   P+  ++YVHR GR GRA   G A++ +  E+E+    +  +
Sbjct  875  VKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEEQERYSVDIAKA  927


 Score = 47.4 bits (111),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 4/69 (6%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            +S+ G+  +    +  + +  PT IQ+++IP I+ G DV+  A+TGSGKT AF IP    
Sbjct  559  WSQCGLGVQTLDVIHRLGYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLIP----  614

Query  64   VYETLKDQQ  72
            ++  ++DQ+
Sbjct  615  MFRHIRDQR  623


>sp|Q54CD8|DDX54_DICDI ATP-dependent RNA helicase ddx54 OS=Dictyostelium 
discoideum OX=44689 GN=helA PE=3 SV=1
Length=1091

 Score = 132 bits (333),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 101/335 (30%), Positives = 166/335 (50%), Gaps = 36/335 (11%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +A+I+ P+RELA QT   +K F +     +LR +LI+GG +  DQ + L    DI++ TP
Sbjct  302  RAVILSPTRELAIQTFKVVKDFSQ---GTQLRTILIVGGDSMEDQFTDLARNPDIIIATP  358

Query  348  GRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD-GKRLQVIV  405
            GRL   L+ TG ++LS+V+++V DEAD L   G+++       Q+ ++ S   +  Q ++
Sbjct  359  GRLMHHLLETG-MSLSKVQYIVFDEADRLFEMGFNE-------QLTEILSKLSENRQTLL  410

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SATL S  V       ++ P  ++L  +  + + +          T R  E+LG     
Sbjct  411  FSATLPSLLV-DFVRAGLNNPKLINLDTDTKISENLSLSFF-----TLRHEEKLGVLLFL  464

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
              D+  K         P++ +               ++ K    IIF  TK   + +   
Sbjct  465  LKDIIYK--------KPQLPTTETTTTTTTNNESNQQQQKKSSTIIFVSTKYHVEFI-HI  515

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
             +++ G         +   +HG   P  RK NL +F+   V  ++ TD+AARGIDI  + 
Sbjct  516  LLERAG--------IASTYIHGYLDPVARKINLAKFRSHQVGVMVVTDLAARGIDIPLLD  567

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
             VIN   P +++ ++HR+GRV RA R G+A SLV+
Sbjct  568  NVINFDFPPKEKIFIHRVGRVARAGRSGIAYSLVS  602


 Score = 60.5 bits (145),  Expect = 5e-08, Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 40/59 (68%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  M +   + +A+ +  + +PT IQ +SIP+IL G D++  A TGSGKTGAF IP+IQ
Sbjct  232  FQSMDLTKNLLKAILKKGFNVPTPIQRKSIPMILDGHDIVGMARTGSGKTGAFVIPMIQ  290


>sp|Q4WT99|PRP5_ASPFU Pre-mRNA-processing ATP-dependent RNA helicase 
prp5 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / 
CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=prp5 PE=3 SV=1
Length=1211

 Score = 132 bits (333),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 169/353 (48%), Gaps = 62/353 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P  LI+ P+RELA Q   + K F K ++   LR +   GG   +DQ++ L+ G +IVV T
Sbjct  649  PIGLIMTPTRELATQIHKDCKPFLKALN---LRAVCAYGGAPIKDQIAELKRGAEIVVCT  705

Query  347  PGRLDDLVST--GKL-NLSQVRFLVLDEADGLLSQGYSDFINR-MHNQIPQVTSDGKRLQ  402
            PGR+ DL++   G++ NL +V ++VLDEAD +   G+   + + M N  P         Q
Sbjct  706  PGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPD-------RQ  758

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTD--RLWERLG  460
             ++ SAT    +++ L+ K +  P  + + G+  V   +  +V   N  T   RL E LG
Sbjct  759  TVLFSATFPR-NMEALARKSLTKPIEIVVGGKSVVAPEITQIVEVRNEDTKFVRLLEILG  817

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
              ++ +DD  A ++ R                                A+IF   +   D
Sbjct  818  --NLYSDD--ANEDAR--------------------------------ALIFVDRQEAAD  841

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             L +  +++G         + C+ +HG +   +R   +E FK G    LI T VAARG+D
Sbjct  842  TLLRELMRKG---------YPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIATSVAARGLD  892

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
            +  +  V+N   P+  ++YVHR GR GRA   G A++ +  E+E+    +  +
Sbjct  893  VKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEEQERYSVDIAKA  945


 Score = 49.3 bits (116),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 4/69 (6%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            +S+ G+  +    ++++ +  PT IQ+++IP I+ G DV+  A+TGSGKT AF IP    
Sbjct  577  WSQCGLGVQTLDVIQKLGYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLIP----  632

Query  64   VYETLKDQQ  72
            ++  ++DQ+
Sbjct  633  MFRHIRDQR  641


>sp|A3LQW7|DBP2_PICST ATP-dependent RNA helicase DBP2 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DBP2 PE=3 SV=1
Length=530

 Score = 130 bits (326),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 98/320 (31%), Positives = 150/320 (47%), Gaps = 57/320 (18%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  L++ P+RELA Q     ++  K+  + ++R   + GG     Q+  L  GV+IV+
Sbjct  169  DGPVVLVLAPTRELAVQIQ---QECSKFGSSSRIRNTCVYGGAPKGQQIRDLARGVEIVI  225

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D++  GK NL +V +LVLDEAD +L  G+   I ++ +QI          Q +
Sbjct  226  ATPGRLIDMLEMGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQI------RPDRQTL  279

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKG-EDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            + SAT    +V+ L+   +  P  V +   E +   T+  VV  ++    R  +RL K H
Sbjct  280  MWSATWPK-EVQNLARDYLQDPIQVRIGSLELAASHTITQVVEVISEYEKR--DRLVK-H  335

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
            + T                                   KE K+   +IF  TK  CD + 
Sbjct  336  LETATTE-------------------------------KESKV---LIFASTKKTCDEVT  361

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             Y    G         +  + +HGD++  ER   L  FK G    ++ TDVAARGID+ G
Sbjct  362  SYLRADG---------WPALAIHGDKQQSERDWVLREFKTGKSPIMVATDVAARGIDVKG  412

Query  584  VPYVINVTLPDEKQNYVHRI  603
            + +VIN  +P   ++YVHRI
Sbjct  413  INFVINFDMPGNIEDYVHRI  432


 Score = 40.8 bits (94),  Expect = 0.045, Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 0/61 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E G    +   V+   +  PT IQ +  P+ L G D++  A TGSGKT ++ +P 
Sbjct  96   ITTFDEAGFPEYVLNEVKAQGFPSPTAIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPA  155

Query  61   I  61
            I
Sbjct  156  I  156


>sp|A6RJ45|IF4A_BOTFB ATP-dependent RNA helicase eIF4A OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=tif1 PE=3 SV=1
Length=398

 Score = 127 bits (319),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 109/367 (30%), Positives = 172/367 (47%), Gaps = 65/367 (18%)

Query  281  KFLPNAPK--ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            K  PN  +  ALI+ P+RELA+Q    +     +++   +     IGG + RD +  L++
Sbjct  86   KLDPNVKQCQALILAPTRELAQQIQKVVVAIGDFMN---VECHACIGGTSVRDDMKALQD  142

Query  339  GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
            G  +VVGTPGR+ D++    L    ++  VLDEAD +LS+G+++ I  +   +PQ T   
Sbjct  143  GPQVVVGTPGRVHDMIQRRFLKTDSMKMFVLDEADEMLSRGFTEQIYDIFQLLPQST---  199

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER  458
               QV++ SAT+   DV +++ K M  P  + +K                  K +   E 
Sbjct  200  ---QVVLLSATMPQ-DVLEVTTKFMRDPVRILVK------------------KAELTLEG  237

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
            + + +I              A   E W   +  L   Y    I      QA+IFC T+  
Sbjct  238  IKQFYI--------------AVEKEDWK--LDTLSDLYETVTIT-----QAVIFCNTRRK  276

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
             D L                 F+   +HGD    +R   ++ F+ G  R LI TD+ ARG
Sbjct  277  VDWLTDKL---------TARDFTVSAMHGDMDQGQRDLIMKEFRSGSSRVLIATDLLARG  327

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGC  638
            ID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V  +  ++   +     +  
Sbjct  328  IDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREI-----EQF  382

Query  639  YNTRLKE  645
            Y+T+++E
Sbjct  383  YSTQIEE  389


 Score = 45.4 bits (106),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 22/60 (37%), Positives = 36/60 (60%), Gaps = 0/60 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +F  M + PE+ + V    +  P+ IQ  +I  ++ G DV+  A++G+GKT  FSI V+Q
Sbjct  26  SFDTMNLKPELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQ  85


>sp|Q6CCZ1|PRP5_YARLI Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) 
OX=284591 GN=PRP5 PE=3 SV=1
Length=974

 Score = 132 bits (331),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 101/358 (28%), Positives = 171/358 (48%), Gaps = 50/358 (14%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P  +I+ P+REL  Q   +++ F   ++   L  +   GG   +DQ++ L+ G  I+V T
Sbjct  460  PLGVIITPTRELCVQIYRDLRPFLAALE---LTAVCAYGGSPIKDQIAALKKGTHIIVCT  516

Query  347  PGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            PGR+ DL++  +   L+LS+V FLV+DEAD +   G+   + ++   I          Q 
Sbjct  517  PGRMIDLLAANQGRVLSLSRVTFLVIDEADRMFDMGFEPQVLKLTQSI------RPDRQT  570

Query  404  IVCSATLHSFDVKKLSEKIMHF-------PTWVDLKGEDSVPDTVHHVV-VPVNPKTD--  453
            ++ SAT     +++L+ +++         P  + +     V   +   V V  N K+   
Sbjct  571  VLFSATFPK-KMEQLARRVLSKRSSDSLGPIEIIVGARSVVASEITQFVEVFQNEKSKFP  629

Query  454  RLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFC  513
            RL E LGK +        +   R G               GE A   I   K    +IF 
Sbjct  630  RLLEVLGK-YFAQGFFDEQSEGRVGT--------------GESAATPIPNPK---CLIFV  671

Query  514  RTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTD  573
              +   D+L +  IQ G         + C+ +HG ++  +R Q +  FK G V  LI T 
Sbjct  672  ERQESADSLLKELIQSG---------YPCLSIHGGKEQADRDQAISDFKSGLVSVLIATS  722

Query  574  VAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVC  631
            VAARG+D+ G+  V+N   P+  ++YVHR+GR GRA + G A++ + +++E++   + 
Sbjct  723  VAARGLDVKGLGLVVNWDSPNHMEDYVHRVGRTGRAGQKGTALTFLLSDQERLAAEIS  780


 Score = 49.7 bits (117),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 52/86 (60%), Gaps = 5/86 (6%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++ ++++G+       + ++ +  PT IQA++IP ++ G DV+  A+TGSGKT AF +P+
Sbjct  377  ISKWTQLGLPGPTMGVLNDLRYDKPTSIQAQAIPAVMSGRDVISVAKTGSGKTLAFLLPM  436

Query  61   IQIVYETLKDQQEGKKGKTTIKTGAS  86
            ++ +   +     G +  TT  +GAS
Sbjct  437  LRHIKHRV-----GVETHTTTLSGAS  457


>sp|Q0D1K3|PRP5_ASPTN Pre-mRNA-processing ATP-dependent RNA helicase 
prp5 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) 
OX=341663 GN=prp5 PE=3 SV=1
Length=1181

 Score = 132 bits (331),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 170/353 (48%), Gaps = 62/353 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P  LI+ P+RELA Q   + K F K ++   LR +   GG   +DQ++ L+ G +IVV T
Sbjct  623  PIGLIMTPTRELATQIHKDCKPFLKALN---LRAVCAYGGAPIKDQIAELKRGAEIVVCT  679

Query  347  PGRLDDLVST--GKL-NLSQVRFLVLDEADGLLSQGYSDFINR-MHNQIPQVTSDGKRLQ  402
            PGR+ DL++   G++ NL +V ++VLDEAD +   G+   + + M N  P         Q
Sbjct  680  PGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANVRPD-------RQ  732

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN--PKTDRLWERLG  460
             ++ SAT    +++ L+ K ++ P  + + G+  V   +  +V   N   K  RL E LG
Sbjct  733  TVLFSATFPR-NMEALARKTLNKPVEIVVGGKSVVAPEITQIVEVRNEDKKFVRLLELLG  791

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
                   ++++ D                             E++  +A+IF   +   D
Sbjct  792  -------NLYSSD-----------------------------ENEDARALIFVERQEAAD  815

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             L +  +++G         + C+ +HG +   +R   +E FK G    LI T VAARG+D
Sbjct  816  TLLRELMRKG---------YPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIATSVAARGLD  866

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
            +  +  V+N   P+  ++YVHR GR GRA   G A++ +  ++E+    +  +
Sbjct  867  VKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERFSVDIAKA  919


 Score = 49.7 bits (117),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 26/69 (38%), Positives = 44/69 (64%), Gaps = 4/69 (6%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            +S+ G+  +    ++ + +  PT IQ+++IP I+ G DV+  A+TGSGKT AF IP    
Sbjct  551  WSQCGLGVQTLDVIDRLGYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTVAFLIP----  606

Query  64   VYETLKDQQ  72
            ++  +KDQ+
Sbjct  607  MFRHIKDQR  615


>sp|A1CHL3|PRP28_ASPCL Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 
513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 
GN=prp28 PE=3 SV=1
Length=798

 Score = 131 bits (329),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 96/361 (27%), Positives = 165/361 (46%), Gaps = 67/361 (19%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P A+++ P+RELA+Q     K+F + +       + I+GG +  +Q   L NG +I++
Sbjct  443  DGPYAIVLAPTRELAQQIEIEAKKFTQPLG---FNVVSIVGGHSLEEQAYSLRNGAEIII  499

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG------  398
             TPGRL D +    L LSQ  ++++DEAD ++  G+ + +N++ + +P VT++       
Sbjct  500  ATPGRLVDCIERRILVLSQCCYIIMDEADRMIDLGFEEPVNKILDALP-VTNEKPDSDEA  558

Query  399  ---------KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN  449
                     +  Q ++ +AT+ S  V++++ K +  P  V +       DTV   V  + 
Sbjct  559  ENSAAMRSHRYRQTMMYTATMPSA-VERIARKYLRRPAIVTIGSAGEAVDTVEQRVELIA  617

Query  450  PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA  509
             + D+  +RL        D+ +    RP                                
Sbjct  618  GE-DKRKKRLA-------DILSSGEFRP------------------------------PI  639

Query  510  IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL  569
            I+F   K +CD + +     G         FS V LHG +   +R+  L   + G    L
Sbjct  640  IVFVNIKRNCDAIAREIKHMG---------FSSVTLHGSKTQDQREAALASVRNGSTDVL  690

Query  570  ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            + TD+A RGID+  V  V+N  +    ++Y HRIGR GRA + G+AI+ +  E   V Y 
Sbjct  691  VATDLAGRGIDVPDVSLVVNFNMATSIESYTHRIGRTGRAGKSGVAITFLGNEDADVMYD  750

Query  630  V  630
            +
Sbjct  751  L  751


 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 0/66 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M ++ E G+   + + V+ + +  PT IQ  +IP+ L   D++  A TGSGKT +F +P+
Sbjct  365  MRSWEESGLPKRLLELVDRVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPL  424

Query  61   IQIVYE  66
            +  + E
Sbjct  425  LVYIAE  430


>sp|Q2U2J6|PRP5_ASPOR Pre-mRNA-processing ATP-dependent RNA helicase 
prp5 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) 
OX=510516 GN=prp5 PE=3 SV=1
Length=1186

 Score = 131 bits (330),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 94/350 (27%), Positives = 171/350 (49%), Gaps = 56/350 (16%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P  LI+ P+RELA Q   + K F K ++   LR +   GG   +DQ++ L+ G +I+V T
Sbjct  628  PVGLIMTPTRELATQIHKDCKPFLKALN---LRAVCAYGGAPIKDQIADLKRGAEIIVCT  684

Query  347  PGRLDDLVST--GKL-NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            PGR+ DL++   G++ NL +V ++VLDEAD +   G+   + ++   +  V  D    Q 
Sbjct  685  PGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKI---LANVRPDK---QT  738

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            ++ SAT    +++ L+ K ++ P  + + G   V   +  +V                  
Sbjct  739  VLFSATFPR-NMEALARKTLNKPVEIVVGGRSVVAPEITQIV-----------------E  780

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
            +R++D              + +   +++L   Y+     E++  +A+IF   +   D L 
Sbjct  781  VRSED--------------KKFIRLLELLGNLYST---DENEDARALIFVERQEGADTLL  823

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
            +  +++G         + C+ +HG +   +R   +E FK G    LI T VAARG+D+  
Sbjct  824  RELMRKG---------YPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIATSVAARGLDVKQ  874

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
            +  V+N   P+  ++YVHR GR GRA   G A++ +  ++E+    +  +
Sbjct  875  LKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERYSVDIAKA  924


 Score = 51.6 bits (122),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 27/72 (38%), Positives = 46/72 (64%), Gaps = 4/72 (6%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++ +S+ G+  +    ++ + +  PT IQA++IP I+ G DV+  A+TGSGKT AF IP 
Sbjct  553  VSKWSQCGLGVQTLDVIDRLGYSAPTSIQAQAIPAIMSGRDVIGVAKTGSGKTIAFLIP-  611

Query  61   IQIVYETLKDQQ  72
               ++  +KDQ+
Sbjct  612  ---MFRHIKDQR  620


>sp|A4QVP2|IF4A_PYRO7 ATP-dependent RNA helicase eIF4A OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=TIF1 PE=3 SV=1
Length=396

 Score = 127 bits (318),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 103/358 (29%), Positives = 167/358 (47%), Gaps = 63/358 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+RELA+Q    +     +++   +     IGG + RD +  L++G  +VVGTP
Sbjct  93   QALILAPTRELAQQIQKVVVAIGDFMN---IECHACIGGTSVRDDMKALQDGPQVVVGTP  149

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++  VLDEAD +LS+G+++ I  +   +PQ T      QV++ S
Sbjct  150  GRVHDMIQRRFLKTDGMKMFVLDEADEMLSRGFTEQIYDIFQLLPQST------QVVLLS  203

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+   DV +++ K M  P  + +K ++   + +    + V                   
Sbjct  204  ATMPQ-DVLEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEK-----------------  245

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W   +  L   Y    I      QA+IFC T+   D L     
Sbjct  246  ---------------EEWK--LDTLSDLYETVTIT-----QAVIFCNTRRKVDWLTDKL-  282

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
                        F+   +HGD    +R   ++ F+ G  R LI TD+ ARGID+  V  V
Sbjct  283  --------TARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLV  334

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            IN  LP  ++NY+HRIGR GR  R G+AI+ V  +  ++   +     +  Y+T+++E
Sbjct  335  INYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREI-----EQFYSTQIEE  387


 Score = 43.9 bits (102),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 0/60 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +F EM +  E+ + +    +  P+ IQ  +I  ++ G DV+  A++G+GKT  FSI V+Q
Sbjct  24  SFDEMNLKSELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQ  83


>sp|P34580|DDX47_CAEEL Putative ATP-dependent RNA helicase T26G10.1 
OS=Caenorhabditis elegans OX=6239 GN=T26G10.1 PE=3 SV=1
Length=489

 Score = 128 bits (322),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 113/414 (27%), Positives = 174/414 (42%), Gaps = 79/414 (19%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P A   L++ P+RELA Q     +QF+       L   +I+GGV    Q   L     I+
Sbjct  110  PQAFFCLVLTPTRELAFQIG---QQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPHII  166

Query  344  VGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            V TPGRL D L +T   NL  ++FL++DEAD +L+  +   ++++   IP      +  +
Sbjct  167  VATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIP------RERR  220

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV--HHVVVPVNPKTDRLWERLG  460
              + SAT+ +  V KL    +  P  V +       D +  H++ VP             
Sbjct  221  TYLFSATM-TKKVSKLERASLRDPARVSVSSRYKTVDNLKQHYIFVPNK-----------  268

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
                                            K  Y V  + EH  + AI+FC T     
Sbjct  269  -------------------------------YKETYLVYLLNEHAGNSAIVFCATCATTM  297

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             +     Q G            V LHG     +R  +L +FK      L+CTDVAARG+D
Sbjct  298  QIAVMLRQLG---------MQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTDVAARGLD  348

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYN  640
            I  V  VIN  +P + ++YVHR+GR  RA R G+AI++V     + +  + ++ GK    
Sbjct  349  IPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQKIEANLGKKLDE  408

Query  641  TRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKR  694
             +  E        NE+ +L E          +   + ++ + E D K   G+KR
Sbjct  409  YKCVE--------NEVMVLVE-------RTQEATENARIEMKEMDEKKKSGKKR  447


 Score = 65.1 bits (157),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 42/60 (70%), Gaps = 0/60 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F+E+GV   +  A + + W+ P+ IQ  ++P  L G DV+  AETGSGKTGAF+IPV+Q
Sbjct  45   SFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQ  104


>sp|Q9P7C7|PRP11_SCHPO Pre-mRNA-processing ATP-dependent RNA helicase 
prp11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 
24843) OX=284812 GN=prp11 PE=1 SV=1
Length=1014

 Score = 131 bits (329),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 162/352 (46%), Gaps = 62/352 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P A+I+ P+RELA Q     K F K ++   +R     GG   +DQ++ L+ G +IVV T
Sbjct  492  PIAIIMTPTRELAVQIFRECKPFLKLLN---IRACCAYGGAPIKDQIADLKRGAEIVVCT  548

Query  347  PGRLDDLVS--TGKL-NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            PGR+ D++S   G++ NL +  +LVLDEAD +   G+   + R+ N I          Q 
Sbjct  549  PGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNI------RPDRQT  602

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV--VVPVNPKTDRLWERLGK  461
            ++ SAT     ++ L+ K++  P  + + G   V   V  +  V P   K  RL E LG 
Sbjct  603  VLFSATFPRA-MEALARKVLKKPVEITVGGRSVVASEVEQIVEVRPEESKFSRLLELLG-  660

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
                                 E+++  + +                + ++F   +   D 
Sbjct  661  ---------------------ELYNNQLDV----------------RTLVFVDRQESADA  683

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            L    +++G         ++   +HG +  H+R   +  +K G    LI T V ARG+D+
Sbjct  684  LLSDLMKRG---------YTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDV  734

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
              +  V+N   P+  ++YVHR+GR GRA   G+A++ +  E+EK    +  +
Sbjct  735  KSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYAVDIAKA  786


 Score = 53.9 bits (128),  Expect = 6e-06, Method: Compositional matrix adjust.
 Identities = 29/81 (36%), Positives = 48/81 (59%), Gaps = 4/81 (5%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + ++S+ G+  +    +  + +  PT IQA++IP I  G DV+  A+TGSGKT AF +P 
Sbjct  417  VTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLP-  475

Query  61   IQIVYETLKDQQEGKKGKTTI  81
               ++  +KDQ+  K G+  I
Sbjct  476  ---MFRHIKDQRPLKTGEGPI  493


>sp|A1CQA9|PRP5_ASPCL Pre-mRNA-processing ATP-dependent RNA helicase 
prp5 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 
513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 
GN=prp5 PE=3 SV=1
Length=1192

 Score = 131 bits (330),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 102/353 (29%), Positives = 168/353 (48%), Gaps = 62/353 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P  LI+ P+RELA Q   + K F K ++   LR +   GG   +DQ++ L+ G +IVV T
Sbjct  631  PIGLIMTPTRELATQIHKDCKPFLKALN---LRAVCAYGGAPIKDQIADLKRGAEIVVCT  687

Query  347  PGRLDDLVST--GKL-NLSQVRFLVLDEADGLLSQGYSDFINR-MHNQIPQVTSDGKRLQ  402
            PGR+ DL++   G++ NL +V ++VLDEAD +   G+   + + M N  P         Q
Sbjct  688  PGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPD-------RQ  740

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTD--RLWERLG  460
             ++ SAT    +++ L+ K +  P  + + G   V   +  +V   N  T   RL E LG
Sbjct  741  TVLFSATFPR-NMEALARKALTKPIEIIVGGRSVVAPEITQIVEVRNEDTKFVRLLEILG  799

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
              ++ +DD  A ++ R                                ++IF   +   D
Sbjct  800  --NLYSDD--ANEDAR--------------------------------SLIFVERQEAAD  823

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             L +  +++G         + C+ +HG +   +R   +E FK G    LI T VAARG+D
Sbjct  824  ALLRELMRKG---------YPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIATSVAARGLD  874

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
            +  +  V+N   P+  ++YVHR GR GRA   G A++ +  E+E+    +  +
Sbjct  875  VKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEEQERYSVDIAKA  927


 Score = 51.2 bits (121),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 44/69 (64%), Gaps = 4/69 (6%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            +S+ G+  +    +E + +  PT IQ+++IP I+ G DV+  A+TGSGKT AF IP    
Sbjct  559  WSQCGLGVQALDVIERLGYESPTSIQSQAIPAIMSGRDVIGVAKTGSGKTVAFLIP----  614

Query  64   VYETLKDQQ  72
            ++  +KDQ+
Sbjct  615  MFRHIKDQR  623


>sp|A4RN46|PRP5_PYRO7 Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 
/ FGSC 8958) OX=242507 GN=PRP5 PE=3 SV=1
Length=1012

 Score = 131 bits (329),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 160/343 (47%), Gaps = 62/343 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P  LI+ P+RELA Q   + K F K +    LR +   GG   +DQ++ L+ G +IVV T
Sbjct  452  PIGLILTPTRELAVQIFRDCKPFLKTLG---LRAVCAYGGPPIKDQIADLKRGAEIVVAT  508

Query  347  PGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
             GR+ DL++  +   ++L +  ++VLDEAD +   G+   + ++   +          Q 
Sbjct  509  TGRMIDLLAANQGRVVSLRRTTYIVLDEADRMFDMGFEPQVMKIFANV------RPDRQT  562

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKT--DRLWERLGK  461
            ++ SAT+    +  L +K++  P  +++ G+  V   +  +V   + K+  +RL E LG+
Sbjct  563  VLFSATMPKI-MDALVKKVLKNPVEIEVGGKSVVASEITQIVEIRDEKSKFNRLLELLGE  621

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
             +   DDV                                      +++IF   +   D 
Sbjct  622  LYKDDDDV--------------------------------------RSLIFVERQEKADE  643

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            L +  +++G         + C+ LHG +   +R   +  FK G    +I T VAARG+D+
Sbjct  644  LLRELLRKG---------YGCMSLHGGKDQVDRDSTISDFKSGVCPVMIATSVAARGLDV  694

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
              +  V+N   P+  ++YVHR GR GRA   G A++ V  E+E
Sbjct  695  KQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFVTEEQE  737


 Score = 47.8 bits (112),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 24/65 (37%), Positives = 42/65 (65%), Gaps = 4/65 (6%)

Query  8    GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYET  67
            G+   I   + ++++  PT IQ +++P+I+ G DV+  A+TGSGKT AF +P    ++  
Sbjct  384  GLTRPILDVIAKLEYDKPTAIQMQALPVIMSGRDVVGVAKTGSGKTMAFLLP----MFRH  439

Query  68   LKDQQ  72
            +KDQ+
Sbjct  440  IKDQE  444


>sp|Q0E2Z7|RH41_ORYSJ DEAD-box ATP-dependent RNA helicase 41 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os02g0201900 PE=2 
SV=2
Length=536

 Score = 129 bits (323),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 95/345 (28%), Positives = 160/345 (46%), Gaps = 59/345 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P A+++ P+REL  Q     K   K +     +  L++GG     Q+  +ENG++++VGT
Sbjct  213  PLAIVLAPTRELCLQVEEQAKVLGKGL---PFKTALVVGGDPLAQQIYRIENGIELIVGT  269

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL DL+    ++L++V   VLDE D LL +G+ D       Q+ Q+       QV++ 
Sbjct  270  PGRLIDLLMKHNVDLNKVDVFVLDEVDCLLERGFRD-------QVMQIFQALSHPQVMMF  322

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPD-TVHHVVVPVNPKTDRLWERLGKSHIR  465
            SAT++S +V+K+S  +      +   G  S P+ +V  VV+                   
Sbjct  323  SATVNS-EVEKMSNSLAKNAIHISC-GNPSRPNKSVKQVVI-------------------  361

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                               W E+ +  +  + +   K+H    A++F  ++I  D L + 
Sbjct  362  -------------------WVESKQKKQKIFEIMTSKQHFKPPAVVFVSSRIGADLLSEA  402

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
                 G           V +HGD+  +ER+++L RF  G+V  ++CT V  RG+D+  V 
Sbjct  403  ITVATG--------LKVVSIHGDKTMNERRESLRRFLTGEVSVVVCTGVLGRGMDLLKVR  454

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
             VI   +P+    YVH++GR  R    G+AI  V  E   ++  +
Sbjct  455  QVILFDMPNSIDEYVHQVGRASRMGVEGMAIVFVNEEDRNLFREL  499


 Score = 47.0 bits (110),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 0/81 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  FS  G+  ++   +E   +++PT +Q + IP  +    +L++A+TGSGKT +F +P+
Sbjct  136  IMCFSSSGLPEKLVLNLEAAGYVMPTPVQMQVIPSSICNRSLLVSADTGSGKTASFLVPI  195

Query  61   IQIVYETLKDQQEGKKGKTTI  81
            I        ++   K+G   I
Sbjct  196  IAHCSHVRSERCTDKQGPLAI  216


>sp|Q6C024|PRP28_YARLI Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) 
OX=284591 GN=PRP28 PE=3 SV=1
Length=575

 Score = 129 bits (324),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 166/360 (46%), Gaps = 65/360 (18%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P  LI+ P+RELA Q  +   +F   +     + + ++GG +A++Q   ++ G +++V
Sbjct  238  NGPYGLILAPTRELAMQIKDEAVKFCAPLG---FKVVSVVGGYSAQEQALAVQEGAELIV  294

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ-----------  393
             TPGRL D++    L L+Q  ++V+DEAD ++  G+ + + ++   +P            
Sbjct  295  ATPGRLLDVIDRRLLVLNQCCYVVMDEADRMVDMGFEEQVQKVLASLPSSNAKPDSDEAE  354

Query  394  ---VTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNP  450
                 S  +  Q ++ +AT+    ++KL++K +  P  V +        TV  +V  +N 
Sbjct  355  NLAAVSTRRYRQTMMYTATM-PVAIEKLAKKYLRRPGIVTIGSAGQAGSTVTQLVEFLN-  412

Query  451  KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAI  510
             TD   +R      R  D+ +K   RP                                +
Sbjct  413  -TDEKRKR------RLLDIISKRQYRP------------------------------PIV  435

Query  511  IFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLI  570
            +F   K DC+ +    +  G         +    +HG ++  +R+Q ++  K+G V  L+
Sbjct  436  VFLNYKRDCEAVSDALVAAG---------WRTAIIHGGKQQEQREQAVQHLKRGAVDVLV  486

Query  571  CTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
             TDVA RG+DI  V  V+N  + +  ++Y HRIGR GRA + G A++ +  E + V + +
Sbjct  487  ATDVAGRGLDIPNVSLVVNFQMANNIESYTHRIGRTGRAGKRGTAVTFLGQEDDDVLFEL  546


 Score = 50.4 bits (119),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 44/76 (58%), Gaps = 1/76 (1%)

Query  1    MAAFSEMGVMPEIAQ-AVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
            + +++E   +P I +  +  M +  PT IQ  +IP+ LG  DV+  AETGSGKT +F IP
Sbjct  161  LRSWNECKEIPGIVRDTISRMGYKEPTPIQRAAIPIALGIRDVIGVAETGSGKTASFLIP  220

Query  60   VIQIVYETLKDQQEGK  75
            +I  + E  K  +  K
Sbjct  221  LISYICELPKLDERSK  236


>sp|A7TGU7|DHH1_VANPO ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=DHH1 PE=3 SV=1
Length=484

 Score = 128 bits (321),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 147/336 (44%), Gaps = 62/336 (18%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N  +ALI+ P+RELA QT   ++   K+     +  ++  GG   RD +  L   V I+V
Sbjct  101  NKIQALIMVPTRELALQTSQVVRTLGKHCG---ISCMVTTGGTNLRDDILRLNETVHILV  157

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GTPGR+ DL S    +LS+    ++DEAD +LS+ +   I ++   +P      K  Q +
Sbjct  158  GTPGRVLDLASRKVADLSECNLFIMDEADKMLSRDFKSIIEQILVFLP------KNHQSL  211

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPD-TVHHVVVPVNPKTDRLWERLGKSH  463
            + SAT     VK+     +H P  ++L  E ++   T ++  V    K   L     K  
Sbjct  212  LFSATF-PLSVKEFMVNHLHKPYEINLMDELTLKGITQYYAFVEEKQKLHCLNTLFSKLQ  270

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
            I                                          +QAIIFC +    + L 
Sbjct  271  I------------------------------------------NQAIIFCNSTNRVELLA  288

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
            +     G         +SC   H   K  ER +    F++G VR L+C+D+  RGIDI  
Sbjct  289  KKITDLG---------YSCYYSHARMKQQERNRVFHEFRQGKVRTLVCSDLLTRGIDIQA  339

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            V  VIN   P   + Y+HRIGR GR   +GLAI+L+
Sbjct  340  VNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLI  375


 Score = 49.3 bits (116),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 24/62 (39%), Positives = 36/62 (58%), Gaps = 0/62 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +  +  E+   + E  +  P+ IQ ESIP+ L G D+L  A+ G+GKT AF IP ++
Sbjct  35  TFEDFYLKRELLMGIFEAGFEKPSPIQEESIPVALAGRDILARAKNGTGKTAAFVIPTLE  94

Query  63  IV  64
            V
Sbjct  95  KV  96


>sp|A2QQA8|PRP5_ASPNC Pre-mRNA-processing ATP-dependent RNA helicase 
prp5 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 
513.88 / FGSC A1513) OX=425011 GN=prp5 PE=3 SV=2
Length=1180

 Score = 131 bits (329),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 169/351 (48%), Gaps = 58/351 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P  LI+ P+RELA Q   + K F K ++   LR +   GG   +DQ++ L+ G +I+V T
Sbjct  621  PVGLIMTPTRELATQIHKDCKPFLKALN---LRAVCAYGGAPIKDQIADLKRGAEIIVCT  677

Query  347  PGRLDDLVST--GKL-NLSQVRFLVLDEADGLLSQGYSDFINR-MHNQIPQVTSDGKRLQ  402
            PGR+ DL++   G++ NL +V ++VLDEAD +   G+   + + M N  P         Q
Sbjct  678  PGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPD-------RQ  730

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
             ++ SAT    +++ L+ K +  P  + + G+  V   +  +V                 
Sbjct  731  TVLFSATFPR-NMEALARKTLTKPIEIVVGGKSVVAPEITQIV-----------------  772

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
             +R DD              + +   +++L   Y+     E++  +A+IF   +   D L
Sbjct  773  EVRNDD--------------QKFVRLLELLGNLYSS---DENEDARALIFVDRQEAADAL  815

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
             +  +++G         + C+ +HG +   +R   +E FK G    LI T VAARG+D+ 
Sbjct  816  LRELMRKG---------YPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIATSVAARGLDVK  866

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
             +  V+N   P+  ++YVHR GR GRA   G A++ +  ++E+    +  +
Sbjct  867  QLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERYSVDIAKA  917


 Score = 47.4 bits (111),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 26/69 (38%), Positives = 44/69 (64%), Gaps = 4/69 (6%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            +S+ G+  +    ++++ +   T IQA++IP I+ G DV+  A+TGSGKT AF IP    
Sbjct  549  WSQCGLGVQTLDVIDKLGYEKTTSIQAQAIPAIMSGRDVIGVAKTGSGKTIAFLIP----  604

Query  64   VYETLKDQQ  72
            ++  +KDQ+
Sbjct  605  MFRHIKDQR  613


>sp|A6R3R5|IF4A_AJECN ATP-dependent RNA helicase eIF4A OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=TIF1 PE=3 
SV=1
Length=385

 Score = 126 bits (316),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 103/337 (31%), Positives = 159/337 (47%), Gaps = 58/337 (17%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            A +ALI+ P+RELA+Q    +     ++    +     IGG++ R+ +  L++G  +VVG
Sbjct  93   ACQALILAPTRELAQQIQKVVVAIGDFM---SIECHACIGGISVREDMKALQDGPQVVVG  149

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGR+ D++    L    ++  VLDEAD +LS G+++ I  +   +PQ T      QV++
Sbjct  150  TPGRVHDMIQRRVLKTDHMKMFVLDEADEMLSHGFTEQIYDIFQFLPQST------QVVL  203

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT+   DV +++ K M  P  + +K                  K +   E + + +I 
Sbjct  204  LSATMPQ-DVLEVTTKFMRDPVRILVK------------------KAELTLEGIKQFYI-  243

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                         A   E W   +  L   Y    I      QA+IFC T+   D L   
Sbjct  244  -------------AVEKEEWK--LDTLSDLYETVTIT-----QAVIFCNTRRKVDWLTDK  283

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
                          F+   +HGD +  +R   ++ F+ G  R LI TD+ ARGID+  V 
Sbjct  284  L---------TARDFTVSAMHGDMEQQQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVS  334

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             VIN  LP  ++NY+HRIGR GR  R G+AI+ V  +
Sbjct  335  LVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTAD  371


 Score = 43.9 bits (102),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 0/67 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +F  M +  E+ + V    +  P+ IQ  +I  ++ G DV+  A++G+GKT  FSI  +Q
Sbjct  26  SFDAMNLRAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQ  85

Query  63  IVYETLK  69
            V   LK
Sbjct  86  KVDTNLK  92


>sp|P0CQ98|PRP5_CRYNJ Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Cryptococcus neoformans var. neoformans serotype 
D (strain JEC21 / ATCC MYA-565) OX=214684 GN=PRP5 PE=3 SV=1
Length=1072

 Score = 131 bits (329),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 108/423 (26%), Positives = 192/423 (45%), Gaps = 94/423 (22%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P A+++ P+RELA Q     + F K ++   +R    +GG +  + ++ ++ G ++V+ T
Sbjct  477  PIAVVMSPTRELASQIYKECQPFLKVLN---IRASCCVGGSSISEDIAAMKKGAEVVICT  533

Query  347  PGRLDDLVSTGKLNLSQVR---FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            PGR+ DL++     ++ VR   ++V+DEAD +   G+   + ++ N +          Q 
Sbjct  534  PGRMIDLLTANNGRVTNVRRTTYIVMDEADRMFDMGFEPQVMKIINNV------RPSAQK  587

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            ++ SAT     ++ L+ +I+  P  + + G  SV          V P+ D+  E      
Sbjct  588  VLFSATFPKT-MESLARRILVKPLEITVGGR-SV----------VAPEIDQRVE------  629

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD---QAIIFCRTKIDCD  520
            +R  D                ++  ++IL GE      +EHK +   + +IF   +   D
Sbjct  630  VRDGDTK--------------FTRLLEIL-GEMG----EEHKDEDDFRTLIFVDRQESAD  670

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
            +L +  +Q+G         + C  LHG ++  +R + ++ FK GDV  ++ T VAARG+D
Sbjct  671  DLFRELLQRG---------YVCASLHGGKEQVDRDEAIKNFKNGDVPIIVATSVAARGLD  721

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYN  640
            +  +  VIN   P+  ++YVHR GR GRA   G  I+ +  E+E+    +  +       
Sbjct  722  VKELKLVINYDAPNHMEDYVHRAGRTGRAGNKGTCITFITPEQERFSVDIVRA-------  774

Query  641  TRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGS  700
                                     L  + + +  D+K   D F GK+  G+ RAAG G 
Sbjct  775  -------------------------LEASKAFIPDDLKKMSDSFLGKIKSGKARAAGSG-  808

Query  701  YKG  703
            Y G
Sbjct  809  YSG  811


 Score = 50.4 bits (119),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 33/45 (73%), Gaps = 0/45 (0%)

Query  22   WLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYE  66
            W  PT IQA++IP I+ G DV+  A+TGSGKT AF +P+++ V +
Sbjct  423  WETPTSIQAQAIPAIMSGRDVIGIAKTGSGKTVAFLLPMLRHVRD  467


>sp|P0CQ99|PRP5_CRYNB Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Cryptococcus neoformans var. neoformans serotype 
D (strain B-3501A) OX=283643 GN=PRP5 PE=3 SV=1
Length=1072

 Score = 131 bits (329),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 108/423 (26%), Positives = 192/423 (45%), Gaps = 94/423 (22%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P A+++ P+RELA Q     + F K ++   +R    +GG +  + ++ ++ G ++V+ T
Sbjct  477  PIAVVMSPTRELASQIYKECQPFLKVLN---IRASCCVGGSSISEDIAAMKKGAEVVICT  533

Query  347  PGRLDDLVSTGKLNLSQVR---FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            PGR+ DL++     ++ VR   ++V+DEAD +   G+   + ++ N +          Q 
Sbjct  534  PGRMIDLLTANNGRVTNVRRTTYIVMDEADRMFDMGFEPQVMKIINNV------RPSAQK  587

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            ++ SAT     ++ L+ +I+  P  + + G  SV          V P+ D+  E      
Sbjct  588  VLFSATFPKT-MESLARRILVKPLEITVGGR-SV----------VAPEIDQRVE------  629

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD---QAIIFCRTKIDCD  520
            +R  D                ++  ++IL GE      +EHK +   + +IF   +   D
Sbjct  630  VRDGDTK--------------FTRLLEIL-GEMG----EEHKDEDDFRTLIFVDRQESAD  670

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
            +L +  +Q+G         + C  LHG ++  +R + ++ FK GDV  ++ T VAARG+D
Sbjct  671  DLFRELLQRG---------YVCASLHGGKEQVDRDEAIKNFKNGDVPIIVATSVAARGLD  721

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYN  640
            +  +  VIN   P+  ++YVHR GR GRA   G  I+ +  E+E+    +  +       
Sbjct  722  VKELKLVINYDAPNHMEDYVHRAGRTGRAGNKGTCITFITPEQERFSVDIVRA-------  774

Query  641  TRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGS  700
                                     L  + + +  D+K   D F GK+  G+ RAAG G 
Sbjct  775  -------------------------LEASKAFIPDDLKKMSDSFLGKIKSGKARAAGSG-  808

Query  701  YKG  703
            Y G
Sbjct  809  YSG  811


 Score = 50.4 bits (119),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 33/45 (73%), Gaps = 0/45 (0%)

Query  22   WLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYE  66
            W  PT IQA++IP I+ G DV+  A+TGSGKT AF +P+++ V +
Sbjct  423  WETPTSIQAQAIPAIMSGRDVIGIAKTGSGKTVAFLLPMLRHVRD  467


>sp|Q0CLX0|PRP28_ASPTN Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) 
OX=341663 GN=prp28 PE=3 SV=1
Length=783

 Score = 130 bits (327),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 163/369 (44%), Gaps = 74/369 (20%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P A+++ P+RELA+Q     K+F   +       + I+GG +  +Q   L NG +I++
Sbjct  420  DGPYAIVLAPTRELAQQIEIEAKKFTIPLG---FTVVSIVGGHSLEEQAYSLRNGAEIII  476

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTS--------  396
             TPGRL D +    L LSQ  ++++DEAD ++  G+ + +N++ + +P            
Sbjct  477  ATPGRLVDCIERRLLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEKPDSDAAE  536

Query  397  ---------------DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV  441
                           D +  Q ++ +AT+ +  V++++ K +  P  V +       DTV
Sbjct  537  NAAAMSQLHHAGGGRDTRYRQTMMYTATMPTA-VERIARKYLRRPAIVTIGSAGEAVDTV  595

Query  442  HHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI  501
               V  +  + D+  +RLG       D+ +    RP                        
Sbjct  596  EQRVELIAGE-DKRKKRLG-------DILSSGEFRP------------------------  623

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
                    I+F   K +CD + +   Q G         FS V LHG +   +R+  L   
Sbjct  624  ------PIIVFVNIKRNCDAIAREIKQWG---------FSSVTLHGSKTQEQREAALASV  668

Query  562  KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT  621
            + G    L+ TD+A RGID+  V  V+N  +    ++Y HRIGR GRA + G+AI+ +  
Sbjct  669  RNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATSIESYTHRIGRTGRAGKSGVAITFLGN  728

Query  622  EKEKVWYHV  630
            E   V Y +
Sbjct  729  EDADVMYDL  737


 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 38/66 (58%), Gaps = 0/66 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M +++E G+   +   V  + +  PT IQ  +IP+ +   D++  A TGSGKT AF +P+
Sbjct  342  MRSWAESGLPSRLLDLVHRVGYKDPTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPL  401

Query  61   IQIVYE  66
            +  + E
Sbjct  402  LVYIAE  407


>sp|P0CQ88|PRP28_CRYNJ Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Cryptococcus neoformans var. neoformans serotype 
D (strain JEC21 / ATCC MYA-565) OX=214684 GN=PRP28 PE=3 
SV=1
Length=738

 Score = 130 bits (327),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 169/360 (47%), Gaps = 68/360 (19%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P ALI+ P+RELA+Q     ++F   +     + + I+GG +  +Q   L +G +I++ T
Sbjct  392  PYALIMAPTRELAQQIETETRRFALPLG---YKCVSIVGGRSVEEQQFALRDGAEIIIAT  448

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP------------QV  394
            PGRL D+V    L +SQ R++V+DEAD ++  G+   +N + + +P            Q 
Sbjct  449  PGRLKDMVDKSILVMSQCRYVVMDEADRMVDLGFEVDLNFILDSMPATFVKPDDSVALQP  508

Query  395  TSDGK----RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNP  450
            T +G+    R+  +  SAT+    V++L+ K +  P  V +       DTV         
Sbjct  509  TKEGEWQGWRVTTLF-SATMPPA-VERLARKYLIKPATVVIGNAGEAVDTVEQ-------  559

Query  451  KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAI  510
                          R + VH  +  +         +  I+IL+       I        I
Sbjct  560  --------------RVEFVHGDEKKK---------ARLIEILRTIGLPPPI--------I  588

Query  511  IFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLI  570
            +F   K   D + +Y +QQ G         S V LH  +   +R+  L+  + G++  L+
Sbjct  589  VFVNQKKTADMVVKY-VQQAG--------MSGVTLHSGKSQEQREAALQALRDGEISVLV  639

Query  571  CTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
             TD+A RGID+  V  VIN  + D  + YVHRIGR GRA + G+AI+ +  + ++V Y +
Sbjct  640  ATDLAGRGIDVPDVSLVINWQMSDTIEKYVHRIGRTGRAGKTGVAITFLTNDDDEVMYDL  699


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 0/61 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            + E  +  +I   +EE+ +  P+ IQ ++IP+ +   D++  A+TGSGKT AF IP++  
Sbjct  317  WRESAIPSQILDIIEEIGYKEPSPIQRQAIPIGMQNRDLIGVAKTGSGKTAAFVIPMLDY  376

Query  64   V  64
            +
Sbjct  377  I  377


>sp|P0CQ89|PRP28_CRYNB Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Cryptococcus neoformans var. neoformans serotype 
D (strain B-3501A) OX=283643 GN=PRP28 PE=3 SV=1
Length=738

 Score = 130 bits (327),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 169/360 (47%), Gaps = 68/360 (19%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P ALI+ P+RELA+Q     ++F   +     + + I+GG +  +Q   L +G +I++ T
Sbjct  392  PYALIMAPTRELAQQIETETRRFALPLG---YKCVSIVGGRSVEEQQFALRDGAEIIIAT  448

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP------------QV  394
            PGRL D+V    L +SQ R++V+DEAD ++  G+   +N + + +P            Q 
Sbjct  449  PGRLKDMVDKSILVMSQCRYVVMDEADRMVDLGFEVDLNFILDSMPATFVKPDDSVALQP  508

Query  395  TSDGK----RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNP  450
            T +G+    R+  +  SAT+    V++L+ K +  P  V +       DTV         
Sbjct  509  TKEGEWQGWRVTTLF-SATMPPA-VERLARKYLIKPATVVIGNAGEAVDTVEQ-------  559

Query  451  KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAI  510
                          R + VH  +  +         +  I+IL+       I        I
Sbjct  560  --------------RVEFVHGDEKKK---------ARLIEILRTIGLPPPI--------I  588

Query  511  IFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLI  570
            +F   K   D + +Y +QQ G         S V LH  +   +R+  L+  + G++  L+
Sbjct  589  VFVNQKKTADMVVKY-VQQAG--------MSGVTLHSGKSQEQREAALQALRDGEISVLV  639

Query  571  CTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
             TD+A RGID+  V  VIN  + D  + YVHRIGR GRA + G+AI+ +  + ++V Y +
Sbjct  640  ATDLAGRGIDVPDVSLVINWQMSDTIEKYVHRIGRTGRAGKTGVAITFLTNDDDEVMYDL  699


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 0/61 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            + E  +  +I   +EE+ +  P+ IQ ++IP+ +   D++  A+TGSGKT AF IP++  
Sbjct  317  WRESAIPSQILDIIEEIGYKEPSPIQRQAIPIGMQNRDLIGVAKTGSGKTAAFVIPMLDY  376

Query  64   V  64
            +
Sbjct  377  I  377


>sp|A1D7N3|IF4A_NEOFI ATP-dependent RNA helicase eIF4A OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=tif1 
PE=3 SV=1
Length=398

 Score = 126 bits (316),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 104/367 (28%), Positives = 169/367 (46%), Gaps = 65/367 (18%)

Query  281  KFLPNAP--KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            K  PN    +ALI+ P+RELA+Q    +     +++   +     IGG   R+ +  L+ 
Sbjct  86   KLDPNVKGCQALILAPTRELAQQIQKVVVAIGDFMN---IECHACIGGTNVREDMKALQE  142

Query  339  GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
            G  +VVGTPGR+ D++    L    ++  +LDEAD +LS+G+++ I  +   +PQ T   
Sbjct  143  GPQVVVGTPGRVQDMIQRRVLRTDNLKMFILDEADEMLSRGFTEQIYDIFQLLPQST---  199

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER  458
               QV++ SAT+   DV +++ K M  P  + +K ++   + +    + V          
Sbjct  200  ---QVVLLSATMPQ-DVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEK--------  247

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
                                    E W   +  L   Y    I      QA+IFC T+  
Sbjct  248  ------------------------EEWK--LDTLSDLYETVTIT-----QAVIFCNTRRK  276

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
             D L                 F+   +HGD +  +R   ++ F+ G  R LI TD+ ARG
Sbjct  277  VDWLTDKL---------TARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARG  327

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGC  638
            ID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V  +  ++   +     +  
Sbjct  328  IDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREI-----EQF  382

Query  639  YNTRLKE  645
            Y+T+++E
Sbjct  383  YSTQIEE  389


 Score = 43.9 bits (102),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 0/60 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +F  M + PE+ + +    +  P+ IQ  +I  I+ G DV+  A++G+GKT  FSI  +Q
Sbjct  26  SFDSMELKPELLRGIYAYGFERPSAIQQRAILPIIKGNDVIAQAQSGTGKTATFSISALQ  85


>sp|Q41382|RH7_SPIOL DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia 
oleracea OX=3562 GN=RH7 PE=2 SV=1
Length=685

 Score = 130 bits (326),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 102/343 (30%), Positives = 159/343 (46%), Gaps = 63/343 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P  L++ P+RELA Q L +   F+ Y     L    + GG     Q+S L  GVDIVVGT
Sbjct  186  PSVLVLLPTRELATQVLAD---FQVYGGAVGLTACSVYGGAPFHSQISSLTRGVDIVVGT  242

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGR+ DL+  G L L  + F VLDEAD +L  G+ D +  +  ++  V+    ++Q ++ 
Sbjct  243  PGRVKDLLEKGVLKLGSLLFRVLDEADEMLKMGFVDDVELILGKVDHVS----KVQTLLF  298

Query  407  SATLHSFDVKKLSEKIMHFP-TWVDLKGEDSVPD--TVHHVVVPVNPKTDRLWERLGKSH  463
            SATL S+ VK++S + +      VDL  +  +    +V H+V+P +              
Sbjct  299  SATLPSW-VKQISTRFLKSAKKTVDLVSDQKMKASISVRHIVIPCS--------------  343

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                           +  P++  + I+                 ++IIF  TK     L 
Sbjct  344  --------------ASARPDLIPDIIRCYGSG-----------GRSIIFTETKESASQLA  378

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
                  G  P           LHGD +  +R+  L+ F+ G    L+ T+VAARG+DI+ 
Sbjct  379  GLL--TGARP-----------LHGDIQQTQREVTLKGFRTGKFMTLVATNVAARGLDIND  425

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
            V  +I    P + ++Y+HR GR GRA   G+A+ L   ++  V
Sbjct  426  VQLIIQCEPPRDVEDYIHRSGRTGRAGNTGVAVMLYDPKRSSV  468


>sp|Q1DQ20|IF4A_COCIM ATP-dependent RNA helicase eIF4A OS=Coccidioides 
immitis (strain RS) OX=246410 GN=TIF1 PE=3 SV=1
Length=398

 Score = 126 bits (316),  Expect = 6e-30, Method: Compositional matrix adjust.
 Identities = 107/360 (30%), Positives = 170/360 (47%), Gaps = 63/360 (18%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            A +ALI+ P+RELA+Q    +     ++    +     IGG   R+ +  L +G  +VVG
Sbjct  93   ACQALILAPTRELAQQIQKVVVAIGDFM---SVECHACIGGTNVREDIKALNDGPQVVVG  149

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGR+ D++    L   Q++  VLDEAD +LS+G+++ I  +   +PQ T      QV++
Sbjct  150  TPGRVHDMIQRRVLKTDQMKMFVLDEADEMLSRGFTEQIYDIFQFLPQST------QVVL  203

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT+   DV  ++ K M  P  + +K                  K +   E + + +I 
Sbjct  204  LSATMPQ-DVLDVTTKFMRDPVRILVK------------------KAELTLEGIKQFYI-  243

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                         A   E W   +  L   Y    I      QA+IFC T+   D L   
Sbjct  244  -------------AVEKEEWK--LDTLSDLYETVTIT-----QAVIFCNTRRKVDWLTDK  283

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
             I            F+   +HG+ + ++R   ++ F+ G  R LI TD+ ARGID+  V 
Sbjct  284  LI---------ARDFTVSAMHGEMEQNQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVS  334

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
             VIN  LP  ++NY+HRIGR GR  R G+AI+ V  +  ++   +     +  Y+T+++E
Sbjct  335  LVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREI-----EQFYSTQIEE  389


 Score = 43.5 bits (101),  Expect = 0.006, Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 0/67 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +F  M +  E+ + V    +  P+ IQ  +I  ++ G DV+  A++G+GKT  FSI  +Q
Sbjct  26  SFDAMNLRAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQ  85

Query  63  IVYETLK  69
            V   LK
Sbjct  86  KVDTNLK  92


>sp|A5DS77|DBP2_LODEL ATP-dependent RNA helicase DBP2 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP2 PE=3 SV=1
Length=552

 Score = 128 bits (322),  Expect = 6e-30, Method: Compositional matrix adjust.
 Identities = 101/350 (29%), Positives = 160/350 (46%), Gaps = 61/350 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  L++ P+RELA Q      +F     + ++R   + GG     Q+  L NGV+I +
Sbjct  188  DGPIVLVLAPTRELACQIQTECSKFGA---SSRIRNTCVYGGAPKGPQIRDLANGVEICI  244

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D++  GK NL +V +LVLDEAD +L  G+   I ++ +QI          Q +
Sbjct  245  ATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQI------RPDRQTL  298

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT    +V+ L+   +  P  V +   +                       L  SH 
Sbjct  299  MWSATWPK-EVQNLARDYLDNPIQVTIGSLE-----------------------LAASHT  334

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD---QAIIFCRTKIDCDN  521
             T  V                    +  K +  V+ ++    D   + ++F  TK  CD 
Sbjct  335  ITQIVQV----------------VTEYQKRDLLVKHLESALADSNSKVLVFASTKRTCDE  378

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            +  Y    G         +  + +HGD++ HER   L+ F++G    ++ TDVAARGID+
Sbjct  379  VTSYLRADG---------WPALAIHGDKEQHERDWVLKEFRQGSHSIMVATDVAARGIDV  429

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVC  631
             G+ +V+N  +P   ++YVHRIGR GR    G AIS     ++K+   +C
Sbjct  430  KGITHVVNYDMPGNIEDYVHRIGRTGRGGATGTAISFFTDNEKKLGGDLC  479


 Score = 38.9 bits (89),  Expect = 0.18, Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP-  59
            + +F E G    +   ++   +  PT IQ +  P+ L G D++  A TGSGKT ++ +P 
Sbjct  115  ITSFDEAGFPDYVLNELKNQGFPKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPG  174

Query  60   VIQIVYETLKDQQEG  74
            ++ I  + L  + +G
Sbjct  175  IVHINAQPLLKRGDG  189


>sp|Q6CB69|DED1_YARLI ATP-dependent RNA helicase DED1 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DED1 PE=3 
SV=1
Length=618

 Score = 129 bits (324),  Expect = 6e-30, Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 152/332 (46%), Gaps = 55/332 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P AL++ P+REL  Q  +  K+F        +R  ++ GG    +Q+  +E G D++V  
Sbjct  245  PTALVLAPTRELVSQIYDEAKKFAY---RSWVRPCVVYGGADIGEQMRNIERGCDLLVAA  301

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL DL+  GK++L  +++LVLDEAD +L  G+           PQ+       + IV 
Sbjct  302  PGRLVDLIDRGKVSLENIKYLVLDEADRMLDMGFE----------PQI-------RAIVQ  344

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
             + +   + ++       FP  + +   D + D +   V  V   ++ + +++       
Sbjct  345  GSGMPDVNERQTLMFSATFPRNIQMLARDFLKDYIFLSVGRVGSTSENITQKV-------  397

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
               + +D  +  A   ++ S A K L                 ++F  TK   D L    
Sbjct  398  --EYVEDGDKISA-LLDILSAAGKGL----------------TLVFVETKRGADYLCDVL  438

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                     +   F    +HGDR   +R++ LE F+ G    L+ T VAARG+DI  V +
Sbjct  439  ---------QSEDFPATSIHGDRSQRDRERALEMFRDGTTPILVATAVAARGLDIPNVTH  489

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            V+N  LP +  +YVHRIGR GRA   G+A + 
Sbjct  490  VVNYDLPTDIDDYVHRIGRTGRAGNTGIATAF  521


 Score = 44.7 bits (104),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 18/37 (49%), Positives = 26/37 (70%), Gaps = 0/37 (0%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            PT +Q  S+P++  G D++  A+TGSGKTG F  PV+
Sbjct  183  PTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVL  219


>sp|Q4WX43|IF4A_ASPFU ATP-dependent RNA helicase eIF4A OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC 
A1100 / Af293) OX=330879 GN=tif1 PE=3 SV=1
Length=406

 Score = 126 bits (316),  Expect = 6e-30, Method: Compositional matrix adjust.
 Identities = 104/367 (28%), Positives = 169/367 (46%), Gaps = 65/367 (18%)

Query  281  KFLPNAP--KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            K  PN    +ALI+ P+RELA+Q    +     +++   +     IGG   R+ +  L+ 
Sbjct  86   KLDPNVKGCQALILAPTRELAQQIQKVVVAIGDFMN---IECHACIGGTNVREDMKALQE  142

Query  339  GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
            G  +VVGTPGR+ D++    L    ++  +LDEAD +LS+G+++ I  +   +PQ T   
Sbjct  143  GPQVVVGTPGRVQDMIQRRVLRTDNLKMFILDEADEMLSRGFTEQIYDIFQLLPQST---  199

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER  458
               QV++ SAT+   DV +++ K M  P  + +K ++   + +    + V          
Sbjct  200  ---QVVLLSATMPQ-DVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAV----------  245

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
                                    E W   +  L   Y    I      QA+IFC T+  
Sbjct  246  ----------------------EKEEWK--LDTLSDLYETVTIT-----QAVIFCNTRRK  276

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
             D L                 F+   +HGD +  +R   ++ F+ G  R LI TD+ ARG
Sbjct  277  VDWLTDKL---------TARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARG  327

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGC  638
            ID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V  +  ++   +     +  
Sbjct  328  IDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREI-----EQF  382

Query  639  YNTRLKE  645
            Y+T+++E
Sbjct  383  YSTQIEE  389


 Score = 44.7 bits (104),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 22/60 (37%), Positives = 35/60 (58%), Gaps = 0/60 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +F  M + PE+ + V    +  P+ IQ  +I  I+ G DV+  A++G+GKT  FSI  +Q
Sbjct  26  SFDAMDLKPELLRGVYAYGFERPSAIQQRAILPIIKGNDVIAQAQSGTGKTATFSISALQ  85


>sp|Q6CT85|RRP3_KLULA ATP-dependent rRNA helicase RRP3 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / 
NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=RRP3 PE=3 SV=1
Length=487

 Score = 127 bits (320),  Expect = 6e-30, Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 150/333 (45%), Gaps = 59/333 (18%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            A I+ P+RELA+Q           +    +R   I+GG++  DQ   L     I++ TPG
Sbjct  138  ACILAPTRELAQQIKETFDSLGSLMG---VRSTCIVGGMSMMDQARDLMRKPHIIIATPG  194

Query  349  RL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            RL D L +T   NL ++++LV+DEAD LL   +   ++R+ N IP   + G+     + S
Sbjct  195  RLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIP---TQGR--TTYLFS  249

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+ S  + KL    +  P    +  +    DT+   ++ V                   
Sbjct  250  ATMTS-KIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVV-------------------  289

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                     PG             LK  + +  + E      I+F RTK + + +     
Sbjct  290  ---------PGG------------LKNTFLIYLLNEFIGKSTIVFTRTKANAERISNLC-  327

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
                       +FS   LHGD   ++R   L+ FK G    L+ TDVAARG+DI  V  V
Sbjct  328  --------NLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIV  379

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            IN  +P + ++Y+HR+GR  RA R G +ISLV+
Sbjct  380  INYDIPVDSKSYIHRVGRTARAGRSGKSISLVS  412


 Score = 60.1 bits (144),  Expect = 5e-08, Method: Compositional matrix adjust.
 Identities = 27/68 (40%), Positives = 48/68 (71%), Gaps = 3/68 (4%)

Query  5    SEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIV  64
            +E+ ++PE+ +A + +++  PT IQ+++IP  L G D++  A+TGSGKT AF+IP++  +
Sbjct  70   TELDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQL  129

Query  65   YETLKDQQ  72
            +    DQQ
Sbjct  130  WH---DQQ  134


>sp|Q7ZVA6|IF4A3_DANRE Eukaryotic initiation factor 4A-III OS=Danio 
rerio OX=7955 GN=eif4a3 PE=2 SV=1
Length=406

 Score = 126 bits (316),  Expect = 7e-30, Method: Compositional matrix adjust.
 Identities = 102/358 (28%), Positives = 165/358 (46%), Gaps = 63/358 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+RELA Q    +     Y++   ++    IGG    + +  L+ G  +V GTP
Sbjct  103  QALILAPTRELAGQIQKVLLALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHVVAGTP  159

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++ LVLDEAD +L++G+ + I  ++  +P  T      QV + S
Sbjct  160  GRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT------QVCLIS  213

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL   ++ +++ K M  P  + +K ++   + +    V V        ER         
Sbjct  214  ATL-PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV--------ER---------  255

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W      L   Y    I      QA+IFC TK   D L +   
Sbjct  256  ---------------EEWK--FDTLCDLYDTLTIT-----QAVIFCNTKRKVDWLTEKM-  292

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
                    +   F+   +HGD    ER+  ++ F+ G  R LI TDV ARG+D+  V  +
Sbjct  293  --------REANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVSQVSLI  344

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            IN  LP+ ++ Y+HRIGR GR  R G+AI+ V  +  ++   +     +  Y+T++ E
Sbjct  345  INYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI-----EQYYSTQIDE  397


 Score = 40.8 bits (94),  Expect = 0.043, Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 39/70 (56%), Gaps = 0/70 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F  MG+  ++ + +    +  P+ IQ  +I  I+ G DV+  +++G+GKT  F + V+Q
Sbjct  34   TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQ  93

Query  63   IVYETLKDQQ  72
             +   +++ Q
Sbjct  94   CLDIQVRETQ  103


>sp|Q9VHS8|IF4A3_DROME Eukaryotic initiation factor 4A-III OS=Drosophila 
melanogaster OX=7227 GN=CG7483 PE=1 SV=1
Length=399

 Score = 125 bits (315),  Expect = 7e-30, Method: Compositional matrix adjust.
 Identities = 104/358 (29%), Positives = 164/358 (46%), Gaps = 63/358 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + L + P+RELA Q    I       D   ++  + IGG    + +  L+ G  IV GTP
Sbjct  96   QVLCLSPTRELAVQIQKVILALG---DMMNVQCHVCIGGTNLGEDIRKLDYGQHIVSGTP  152

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++ LVLDEAD +L++G+ + I  ++  +P  T      QV++ S
Sbjct  153  GRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT------QVVLIS  206

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL   ++ +++ K M  P  + +K ++   + +    V V        ER         
Sbjct  207  ATL-PHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAV--------ER---------  248

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W      L   Y    I      QA+IFC TK   D L +   
Sbjct  249  ---------------EEWK--FDTLCDLYDTLTIT-----QAVIFCNTKRKVDWLTEKM-  285

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
                    +   F+   +HGD    ER + ++ F+ G  R LI TDV ARGID+  V  V
Sbjct  286  --------REANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLITTDVWARGIDVQQVSLV  337

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            IN  LP+ ++ Y+HRIGR GR  R G+AI+ V ++  ++   +     +  Y+T++ E
Sbjct  338  INYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDI-----EQYYSTQIDE  390


 Score = 47.8 bits (112),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 0/72 (0%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           +  F+ M +  E+ + +    +  P+ IQ  SI  I+ G DV+  A++G+GKT  FSI +
Sbjct  25  IPTFNAMNLKEELLRGIYAYGFEKPSAIQQRSITPIVKGRDVIAQAQSGTGKTATFSISI  84

Query  61  IQIVYETLKDQQ  72
           +Q +  TL++ Q
Sbjct  85  LQSLDTTLRETQ  96


>sp|Q650T9|RH7_ORYSJ DEAD-box ATP-dependent RNA helicase 7 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os09g0520700 PE=2 SV=1
Length=696

 Score = 129 bits (324),  Expect = 9e-30, Method: Compositional matrix adjust.
 Identities = 105/356 (29%), Positives = 162/356 (46%), Gaps = 63/356 (18%)

Query  266  IVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
            I++S  +G  + ++       P  L++ P+RELA+Q   +   F  Y     L    + G
Sbjct  173  ILESLVNGTHKASRRTDYGRPPTVLVLLPTRELAKQVHTD---FAFYGATFGLSACCVYG  229

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            G   R Q   +  GVDIVVGTPGR+ D V  G LN   ++F VLDEAD +L+ G+ D + 
Sbjct  230  GSDYRSQEMAIRKGVDIVVGTPGRVKDFVEKGTLNFRSLKFRVLDEADEMLNMGFVDDVE  289

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF-PTWVDLKGEDSV--PDTVH  442
             +  ++  VT    ++Q ++ SAT+  + VKKLS + +      VDL G++ +    +V 
Sbjct  290  LILGKVEDVT----KVQTLLFSATIPEW-VKKLSLRFLKSGKKTVDLVGDEKLKASASVR  344

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
            H+ +P N        R  ++ +  D +     +R G                        
Sbjct  345  HLALPCN--------RAARAQVIPDIIRC--YSRGG------------------------  370

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
                 + IIF  TK    +L              G       LHGD    +R+  L  F+
Sbjct  371  -----RTIIFTETKESASDL-------------SGLIAGSRALHGDVAQAQREVILAGFR  412

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
             G    L+ T+VAARG+DI+ V  +I    P + + Y+HR GR GRA   G+A+ L
Sbjct  413  SGKFLVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML  468


 Score = 35.0 bits (79),  Expect = 2.6, Method: Compositional matrix adjust.
 Identities = 16/35 (46%), Positives = 24/35 (69%), Gaps = 0/35 (0%)

Query  28   IQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            IQA +  L+L G D++  A TG GKT AF +P+++
Sbjct  141  IQATTFDLVLDGHDLVGRARTGQGKTLAFVLPILE  175


>sp|Q75BS4|DHH1_EREGS ATP-dependent RNA helicase DHH1 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DHH1 PE=3 SV=1
Length=484

 Score = 127 bits (319),  Expect = 9e-30, Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 153/335 (46%), Gaps = 60/335 (18%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N  +ALI+ P+RELA QT   ++   K+     +  ++  GG   RD +  L   V ++V
Sbjct  96   NKIQALIMVPTRELALQTSQVVRTLGKHCG---ISCMVTTGGTNLRDDIMRLNEPVHVLV  152

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GTPGR+ DL S    +LS+    V+DEAD +LS+ +   + ++ + +PQ        Q +
Sbjct  153  GTPGRVLDLASRKVADLSECSLFVMDEADKMLSRDFKSLVEQILSFLPQ------NHQSL  206

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT     VK+   K ++ P  ++L  E ++     +             E   K H 
Sbjct  207  LFSATF-PLTVKEFMVKHLNKPYEINLMDELTLKGITQYYA---------FVEERQKLHC  256

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                     NT        ++S+                 +++QAIIFC +    + L +
Sbjct  257  L--------NT--------LFSKL----------------QINQAIIFCNSTNRVELLAK  284

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
                 G         +SC   H   K  ER +    F++G VR L+C+D+  RGIDI  V
Sbjct  285  KITDLG---------YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAV  335

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
              VIN   P   + Y+HRIGR GR   +GLAI+L+
Sbjct  336  NVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLI  370


 Score = 48.9 bits (115),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 0/62 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +  +  E+   + E  +  P+ IQ E+IP+ L   D+L  A+ G+GKT AF IP ++
Sbjct  30  TFEDFYLRRELLMGIFEAGFERPSPIQEEAIPIALARRDILARAKNGTGKTAAFVIPTLE  89

Query  63  IV  64
           IV
Sbjct  90  IV  91


>sp|C4LB49|RHLB_TOLAT ATP-dependent RNA helicase RhlB OS=Tolumonas 
auensis (strain DSM 9187 / TA4) OX=595494 GN=rhlB PE=3 
SV=1
Length=425

 Score = 126 bits (316),  Expect = 9e-30, Method: Compositional matrix adjust.
 Identities = 107/349 (31%), Positives = 163/349 (47%), Gaps = 64/349 (18%)

Query  271  HSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
            HS +A+  Q     N P+ LI+ P+RELA Q  N+        ++   +  L  GG    
Sbjct  74   HSASAERRQ-----NQPRVLIMAPTRELAVQIYNDAVPMS---ESCGFKMGLAYGGDGYD  125

Query  331  DQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ  390
             QL+VL+ GVD+++GT GR+ D +  G ++L  ++ +VLDEAD +   G+   I  +  +
Sbjct  126  KQLAVLQEGVDLLIGTTGRIIDYLKQGIIDLGAIQVVVLDEADRMFDLGFIKDIRFLFRR  185

Query  391  IPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVVVPVN  449
            +P      +RL ++  SATL S  V++L+ + M+ P  + ++ E      +   +  P N
Sbjct  186  MP---PPAQRLNMLF-SATL-SLRVQELAYEHMNEPQHIQIEPEQMTGQRIKEELFYPSN  240

Query  450  PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA  509
               D++   L                       E W E                    +A
Sbjct  241  --EDKMLLLLTLME-------------------EDWPE--------------------KA  259

Query  510  IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL  569
            IIF  TK  C+++  +           GH+     L GD    +R + LE F  G +  L
Sbjct  260  IIFANTKHGCEDVHAWL-------QADGHRVGL--LTGDVPQKKRLKILEDFTAGLLDVL  310

Query  570  ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            + TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA R G AIS 
Sbjct  311  VATDVAARGLHIPDVSHVFNYDLPDDAEDYVHRIGRTGRAGRSGHAISF  359


 Score = 48.1 bits (113),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 36/53 (68%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           F+E+G+ P++   VE   +   T IQAE+IPL+L G ++   A+TG+GKT AF
Sbjct  11  FAELGLEPQVLAGVEAKGFHNCTPIQAETIPLLLTGKNIAGQAQTGTGKTIAF  63


>sp|B7ZTW1|IF4A3_XENTR Eukaryotic initiation factor 4A-III OS=Xenopus 
tropicalis OX=8364 GN=eif4a3 PE=2 SV=1
Length=415

 Score = 125 bits (315),  Expect = 9e-30, Method: Compositional matrix adjust.
 Identities = 102/358 (28%), Positives = 165/358 (46%), Gaps = 63/358 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+RELA Q    +     Y++   ++    IGG    + +  L+ G  +V GTP
Sbjct  112  QALILAPTRELAGQIQKVLLALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHVVAGTP  168

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++ LVLDEAD +L++G+ + I  ++  +P  T      QV + S
Sbjct  169  GRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT------QVCLIS  222

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL   ++ +++ K M  P  + +K ++   + +    V V        ER         
Sbjct  223  ATL-PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV--------ER---------  264

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W      L   Y    I      QA+IFC TK   D L +   
Sbjct  265  ---------------EEWK--FDTLCDLYDTLTIT-----QAVIFCNTKRKVDWLTEKM-  301

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
                    +   F+   +HGD    ER+  ++ F+ G  R LI TDV ARG+D+  V  +
Sbjct  302  --------REANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLI  353

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            IN  LP+ ++ Y+HRIGR GR  R G+AI+ V  +  ++   +     +  Y+T++ E
Sbjct  354  INYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI-----EQYYSTQIDE  406


 Score = 40.8 bits (94),  Expect = 0.037, Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 39/70 (56%), Gaps = 0/70 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F  MG+  ++ + +    +  P+ IQ  +I  I+ G DV+  +++G+GKT  F + V+Q
Sbjct  43   TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQ  102

Query  63   IVYETLKDQQ  72
             +   +++ Q
Sbjct  103  CLDIQVRETQ  112


>sp|Q54Y81|DDX23_DICDI ATP-dependent RNA helicase ddx23 OS=Dictyostelium 
discoideum OX=44689 GN=helB2 PE=2 SV=1
Length=834

 Score = 129 bits (325),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 99/361 (27%), Positives = 158/361 (44%), Gaps = 67/361 (19%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P AL++ P+REL +Q     + F ++      R + ++GG +  DQ   +  G +I++
Sbjct  488  DGPYALVMAPTRELVQQIEKETRNFAQHFG---FRVVSLVGGQSIEDQAYQVSKGCEIII  544

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP------------  392
             TPGRL+D +    L L+Q  ++VLDEAD ++  G+   +  + + +P            
Sbjct  545  ATPGRLNDCLEKRYLVLNQCNYIVLDEADMMIDLGFEPQVTSVLDAMPSSFLKSEDDEMA  604

Query  393  -QVTSDGKRL--QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN  449
             +  SD   +    I+ SAT+    V+KLS+K +  P  + +     V D +   V+ V 
Sbjct  605  EKQESDRSHIYRTTILFSATMPPL-VEKLSKKYLRRPCTITIGEAGKVVDRIRQTVIFVK  663

Query  450  PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA  509
             + D                                       K E+  + IK+      
Sbjct  664  SEND---------------------------------------KKEHLTQLIKDGPPPPI  684

Query  510  IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL  569
            IIF   K  CD +          P  +  + S   LH  R   +R+  LE FKK     L
Sbjct  685  IIFVNKKKHCDII---------APVLEECRVSYTILHSGRSQEQREAALEGFKKRKYEVL  735

Query  570  ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            I T VA+RGI + GV +VIN  +P   ++Y HRIGR GRA   GLA S +  +  ++ Y 
Sbjct  736  IATGVASRGIHVDGVTHVINFDIPKNIEDYTHRIGRTGRAGSAGLASSFITDKDVEIMYD  795

Query  630  V  630
            +
Sbjct  796  L  796


 Score = 54.7 bits (130),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 26/61 (43%), Positives = 40/61 (66%), Gaps = 0/61 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  + E  +  EI +A+ ++ +  P+ IQ +SIP+ L G D+L  AETGSGKT AF IP+
Sbjct  412  IRTWQESNLPREILEAIRQLGYEKPSPIQMQSIPISLTGRDILGIAETGSGKTCAFVIPM  471

Query  61   I  61
            +
Sbjct  472  L  472


>sp|P39517|DHH1_YEAST ATP-dependent RNA helicase DHH1 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DHH1 
PE=1 SV=1
Length=506

 Score = 127 bits (319),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 99/335 (30%), Positives = 151/335 (45%), Gaps = 60/335 (18%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N  +ALI+ P+RELA QT   ++   K+     +  ++  GG   RD +  L   V I+V
Sbjct  113  NKIQALIMVPTRELALQTSQVVRTLGKHCG---ISCMVTTGGTNLRDDILRLNETVHILV  169

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GTPGR+ DL S    +LS     ++DEAD +LS+ +   I ++ + +P         Q +
Sbjct  170  GTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTH------QSL  223

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT     VK+   K +H P  ++L  E ++     +             E   K H 
Sbjct  224  LFSATF-PLTVKEFMVKHLHKPYEINLMEELTLKGITQYYA---------FVEERQKLHC  273

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                     NT        ++S+                 +++QAIIFC +    + L +
Sbjct  274  L--------NT--------LFSKL----------------QINQAIIFCNSTNRVELLAK  301

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
                 G         +SC   H   K  ER +    F++G VR L+C+D+  RGIDI  V
Sbjct  302  KITDLG---------YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAV  352

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
              VIN   P   + Y+HRIGR GR   +GLAI+L+
Sbjct  353  NVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLI  387


 Score = 46.6 bits (109),  Expect = 7e-04, Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 0/70 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F +  +  E+   + E  +  P+ IQ E+IP+ + G D+L  A+ G+GKT AF IP ++
Sbjct  47   TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLE  106

Query  63   IVYETLKDQQ  72
             V   L   Q
Sbjct  107  KVKPKLNKIQ  116


>sp|A6ZXG9|DHH1_YEAS7 ATP-dependent RNA helicase DHH1 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DHH1 PE=3 SV=1
Length=506

 Score = 127 bits (319),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 99/335 (30%), Positives = 151/335 (45%), Gaps = 60/335 (18%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N  +ALI+ P+RELA QT   ++   K+     +  ++  GG   RD +  L   V I+V
Sbjct  113  NKIQALIMVPTRELALQTSQVVRTLGKHCG---ISCMVTTGGTNLRDDILRLNETVHILV  169

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GTPGR+ DL S    +LS     ++DEAD +LS+ +   I ++ + +P         Q +
Sbjct  170  GTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTH------QSL  223

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT     VK+   K +H P  ++L  E ++     +             E   K H 
Sbjct  224  LFSATF-PLTVKEFMVKHLHKPYEINLMEELTLKGITQYYA---------FVEERQKLHC  273

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                     NT        ++S+                 +++QAIIFC +    + L +
Sbjct  274  L--------NT--------LFSKL----------------QINQAIIFCNSTNRVELLAK  301

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
                 G         +SC   H   K  ER +    F++G VR L+C+D+  RGIDI  V
Sbjct  302  KITDLG---------YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAV  352

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
              VIN   P   + Y+HRIGR GR   +GLAI+L+
Sbjct  353  NVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLI  387


 Score = 46.6 bits (109),  Expect = 7e-04, Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 0/70 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F +  +  E+   + E  +  P+ IQ E+IP+ + G D+L  A+ G+GKT AF IP ++
Sbjct  47   TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLE  106

Query  63   IVYETLKDQQ  72
             V   L   Q
Sbjct  107  KVKPKLNKIQ  116


>sp|Q8W4R3|RH30_ARATH DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis 
thaliana OX=3702 GN=RH30 PE=1 SV=2
Length=591

 Score = 128 bits (322),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 153/348 (44%), Gaps = 71/348 (20%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  LI+ P+RELA Q     ++F        +R   I GG     Q+  L  GV+IV+
Sbjct  237  DGPIVLILAPTRELAVQIQEESRKFGL---RSGVRSTCIYGGAPKGPQIRDLRRGVEIVI  293

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D++     NL +V +LVLDEAD +L  G+   I ++ +QI          Q +
Sbjct  294  ATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQI------RPDRQTL  347

Query  405  VCSATLHSFDVKKLSEKIMHFPT-----WVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
            + SAT    +V+ L+ + +  P        DLK   S+   +   +VP            
Sbjct  348  LWSATWPR-EVETLARQFLRDPYKAIIGSTDLKANQSINQVIE--IVP------------  392

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD--QAIIFCRTKI  517
                                 +PE ++  + +LK            MD  + +IF  TK 
Sbjct  393  ---------------------TPEKYNRLLTLLK----------QLMDGSKILIFVETKR  421

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
             CD + +     G         +  + +HGD+   ER + L  FK G    +  TDVAAR
Sbjct  422  GCDQVTRQLRMDG---------WPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAAR  472

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            G+D+  +  V+N   P+  ++Y+HRIGR GRA   G+A +    +  K
Sbjct  473  GLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAK  520


 Score = 46.6 bits (109),  Expect = 9e-04, Method: Compositional matrix adjust.
 Identities = 23/61 (38%), Positives = 36/61 (59%), Gaps = 0/61 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M  F +      I +A+ ++ +  PT IQA+  P+ L G D++  AETGSGKT A+ +P 
Sbjct  164  MKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPA  223

Query  61   I  61
            +
Sbjct  224  L  224


>sp|Q2UPY3|IF4A_ASPOR ATP-dependent RNA helicase eIF4A OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=tif1 
PE=3 SV=1
Length=421

 Score = 125 bits (315),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 105/367 (29%), Positives = 170/367 (46%), Gaps = 65/367 (18%)

Query  281  KFLPNAP--KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            K  PN    +ALI+ P+RELA+Q    +     +++   +     IGG A R+ +  L  
Sbjct  109  KLDPNVKGCQALILAPTRELAQQIQKVVVAIGDFMN---ITCHACIGGTAVREDMKALGE  165

Query  339  GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
            G ++VVGTPGR+ D++    L    ++  +LDEAD +LS+G+++ I  +   +PQ T   
Sbjct  166  GPEVVVGTPGRVHDMIQRRVLKTDHLKQFILDEADEMLSRGFTEQIYDIFQLLPQST---  222

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER  458
               QV++ SAT+   DV +++ K M  P  + +K ++   + +    + V          
Sbjct  223  ---QVVLLSATMPQ-DVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEK--------  270

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
                                    E W   +  L   Y    I      QA+IFC T+  
Sbjct  271  ------------------------EEWK--LDTLSDLYETVTIT-----QAVIFCNTRRK  299

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
             D L                 F+   +HGD +  +R   ++ F+ G  R LI TD+ ARG
Sbjct  300  VDWLTDKL---------TARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIATDLLARG  350

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGC  638
            ID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V  +  ++   +     +  
Sbjct  351  IDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREI-----EQF  405

Query  639  YNTRLKE  645
            Y+T+++E
Sbjct  406  YSTQIEE  412


 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 22/60 (37%), Positives = 35/60 (58%), Gaps = 0/60 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F  M + PE+ + V    +  P+ IQ  +I  I+ G DV+  A++G+GKT  FSI  +Q
Sbjct  49   SFDAMELKPELLRGVYAYGFERPSAIQQRAIKPIIKGSDVIAQAQSGTGKTATFSISALQ  108


>sp|Q5N7W4|RH30_ORYSJ DEAD-box ATP-dependent RNA helicase 30 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os01g0911100 PE=2 
SV=2
Length=666

 Score = 129 bits (323),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 150/346 (43%), Gaps = 67/346 (19%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  LI+ P+RELA Q      +F  Y    + R   I GG     Q+  L  GV+IV+
Sbjct  323  DGPIVLILAPTRELAVQIQQESGKFGSYS---RTRSTCIYGGAPKGPQIRDLRRGVEIVI  379

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D++  G  NL +V +LVLDEAD +L  G+   I ++   + Q+  D    Q +
Sbjct  380  ATPGRLIDMLEGGHTNLRRVTYLVLDEADRMLDMGFEPQIRKI---VAQIRPD---RQTL  433

Query  405  VCSATLHSFDVKKLSEKIMHFPTWV-----DLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              SAT    +V+ L+ + +  P  V     DLK   S+   +   V+  + K  RL + L
Sbjct  434  YWSATWPR-EVESLARQFLQNPYKVIIGSPDLKANHSIQQIIE--VISEHEKYPRLSKLL  490

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
                                           ++ G             + +IF +TK DC
Sbjct  491  S-----------------------------DLMDGS------------RILIFFQTKKDC  509

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            D + +     G         +  + +HGD+   ER   L  FK G    +  TDVAARG+
Sbjct  510  DKVTRQLRMDG---------WPALSIHGDKAQAERDYVLAEFKSGKSPIMAATDVAARGL  560

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            D+  +  VIN   P   ++Y+HRIGR GRA   G A +       K
Sbjct  561  DVKDIKCVINFDFPTTLEDYIHRIGRTGRAGASGTAFTFFTLSNAK  606


 Score = 39.7 bits (91),  Expect = 0.11, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 33/56 (59%), Gaps = 0/56 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
            F E        QA+ +  ++ PT IQ++  P+ L G D++  A+TGSGKT ++ +P
Sbjct  253  FQEANFPDYCMQAIAKSGFVEPTPIQSQGWPMALKGRDMIGIAQTGSGKTLSYLLP  308


>sp|Q7SEL0|PRP28_NEUCR Pre-mRNA-splicing ATP-dependent RNA helicase 
prp-28 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A 
/ CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=prp-28 
PE=3 SV=1
Length=728

 Score = 129 bits (324),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 95/352 (27%), Positives = 165/352 (47%), Gaps = 44/352 (13%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P ALI+ P+REL +Q  +  K+F   +       + I+GG +  +Q   L NG +I+V
Sbjct  368  DGPYALILAPTRELVQQIESEAKKFATPLG---FTVVSIVGGHSLEEQAFALRNGAEIIV  424

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D +    L  SQ  + ++DEAD ++ QG+ + + ++ + +P            
Sbjct  425  ATPGRLVDCLERRLLVFSQCCYTIMDEADRMIDQGFEEPLTKILDAMP------------  472

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            V +    + D    +E       +VD  G+D    T+ +    + P    + ER+ K ++
Sbjct  473  VTNEKPDTDD----AENPQLMSRYVD--GKDRYRQTMMYTAT-MPP----IVERIAKKYL  521

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA------IIFCRTKID  518
            R   +    N     ++ E   + ++ + GE   +   +  ++        I+F   K +
Sbjct  522  RRPAIVTIGNAGEAVDTVE---QRVEFVSGEDKRKKRLQEILNSGQFKPPIIVFVNIKRN  578

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
            CD + +         D KG  +S V LHG +   +R+  L   + G    L+ TD+A RG
Sbjct  579  CDMVAR---------DIKGMGYSAVTLHGSKTQEQREAALASLRNGQTDILVATDLAGRG  629

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
            ID+  V  V+N  +    ++Y HRIGR GRA + G+AI+ +  E   V Y +
Sbjct  630  IDVPDVSLVVNFNMATNIESYTHRIGRTGRAGKSGVAITFLGPEDNDVLYDL  681


 Score = 42.4 bits (98),  Expect = 0.018, Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 0/66 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M ++ E  +   +   V+ + +  PT IQ  +IP+ L   D++  A TGSGKT AF +P+
Sbjct  292  MRSWEESTLPRRLLDIVKNVGYDEPTPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPL  351

Query  61   IQIVYE  66
            +  + E
Sbjct  352  LVYISE  357


>sp|Q54IV3|DDX42_DICDI Probable ATP-dependent RNA helicase ddx42 
OS=Dictyostelium discoideum OX=44689 GN=ddx42 PE=3 SV=1
Length=986

 Score = 129 bits (325),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 155/340 (46%), Gaps = 65/340 (19%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P AL + P+RELA Q      ++ KY    KL+  ++ GGV+ + Q   L+ G +I+V
Sbjct  377  DGPIALFLAPTRELAHQIYLETLKYSKYF---KLKTTVLYGGVSKQQQCKELKAGCEIIV  433

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL---  401
             TPGRL D++      L++V +LVLDEAD +   G+           PQV S    +   
Sbjct  434  ATPGRLIDMIKLKATKLNRVSYLVLDEADKMFDFGFG----------PQVLSIVNHVRPD  483

Query  402  -QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLG  460
             Q ++ SAT    +V++ +  I+  P  + +    S    +  +V  +   +D+ W  L 
Sbjct  484  RQTLLFSATFKP-NVEEFARTILSDPIKISIGMIGSANSDITQIVQVLKSDSDK-WNWL-  540

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
                                     +  + +L  + +V           +IF  TK+  +
Sbjct  541  -------------------------TNQLALLLSQGSV-----------LIFVSTKVAVE  564

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             L     + G         F    LHGD+   ER Q ++ FK+G +  LI TDVAARG+D
Sbjct  565  QLSSNLTKFG---------FQTCTLHGDKNQIERSQTIQTFKEGKINILIATDVAARGLD  615

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            I  +  V+N     + +++ HRIGR GRA   G+A +L+ 
Sbjct  616  IPLIKNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLIT  655


 Score = 45.8 bits (107),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 23/61 (38%), Positives = 34/61 (56%), Gaps = 0/61 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F   G    + QA+ +     PT IQ ++IP+ L G D++  A+TGSGKT  F  P 
Sbjct  304  VTSFGHYGFDDILLQAIAKQSIETPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPS  363

Query  61   I  61
            I
Sbjct  364  I  364


>sp|A7ENE0|PRP5_SCLS1 Pre-mRNA-processing ATP-dependent RNA helicase 
prp5 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 
1980 / Ss-1) OX=665079 GN=prp5 PE=3 SV=1
Length=1114

 Score = 130 bits (326),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 95/354 (27%), Positives = 164/354 (46%), Gaps = 62/354 (18%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  LI+ P+RELA Q     K F K +    LR +   GG   +DQ++ L+ G +I+V
Sbjct  555  DGPIGLIMTPTRELATQIHKECKPFLKAMG---LRAVCAYGGAIIKDQIADLKRGAEIIV  611

Query  345  GTPGRLDDLVS--TGKL-NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL  401
             TPGR+ +L++  +G++ NL +V ++VLDEAD +   G+   + ++ N I          
Sbjct  612  CTPGRMIELLAANSGRVTNLQRVTYVVLDEADRMFDMGFEPQVMKVFNNI------RPNR  665

Query  402  QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTD--RLWERL  459
            Q I+ SAT+    +  L++K +  P  + + G   V   +  +V     K    RL E L
Sbjct  666  QTILFSATMPRI-MDALAKKTLQSPVEIVVGGRSVVAPEITQIVEVREEKEKFHRLLELL  724

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
            G+ +   +D                                       + +IF   +   
Sbjct  725  GELYNADEDA--------------------------------------RTLIFVDRQEKA  746

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            D+L +  +++G         + C+ +HG +   +R   ++ FK G V  +I T VAARG+
Sbjct  747  DDLLKDLMRKG---------YPCMSIHGGKDQVDRDSTIDDFKAGVVPIMIATSVAARGL  797

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
            D+  +  V+N   P+  ++YVHR GR GRA   G A++ +  E+E+    +  +
Sbjct  798  DVKQLKLVVNFDAPNHLEDYVHRAGRTGRAGNTGTAVTFITEEQEQYSVGIAKA  851


 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 38/56 (68%), Gaps = 4/56 (7%)

Query  17   VEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQ  72
            ++++ +  PT IQ ++IP I+ G DV+  A+TGSGKT AF +P    ++  ++DQ+
Sbjct  498  IKKLGYDKPTSIQMQAIPAIMSGRDVIGVAKTGSGKTIAFLLP----MFRHIRDQR  549


>sp|Q6BRN4|IF4A_DEBHA ATP-dependent RNA helicase eIF4A OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 
/ JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=TIF1 PE=3 SV=1
Length=397

 Score = 125 bits (313),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 103/360 (29%), Positives = 169/360 (47%), Gaps = 63/360 (18%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            + +ALI+ P+RELA Q  N I     Y++         IGG + +D +   ++GV IVVG
Sbjct  91   STQALILAPTRELALQIQNVITHIGLYLNVTVHAS---IGGTSMKDDIEAFKSGVQIVVG  147

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGR+ D++        +V+  +LDEAD +LS G+ + I  +   +P+ T      QV++
Sbjct  148  TPGRVFDMIERRFFKTDKVKMFILDEADEMLSSGFKEQIYNIFRLLPETT------QVVL  201

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT+   DV +++ K M+ P  + +K ++   + +    + V  + D  ++ L   +  
Sbjct  202  LSATMPQ-DVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVE-QEDYKFDCLCDLY--  257

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                                 ++I +                QA+IFC T+   + L   
Sbjct  258  ---------------------DSISV---------------TQAVIFCNTRSKVEFLTTK  281

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
                      KG  F+   +H D    +R   +  F+ G  R LI TD+ ARGID+  V 
Sbjct  282  L---------KGENFTVSAIHADLPQADRDTIMNEFRSGSSRILISTDLLARGIDVQQVS  332

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
             VIN  LP  K+NY+HRIGR GR  R G+AI+ V  +   +   +     +  Y+T+++E
Sbjct  333  LVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDQDVGMMREI-----EKFYSTQIEE  387


 Score = 42.4 bits (98),  Expect = 0.015, Method: Compositional matrix adjust.
 Identities = 23/70 (33%), Positives = 37/70 (53%), Gaps = 0/70 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F ++ + P I + +    +  P+ IQ  +I  I  G DVL  A++G+GKT  F+I  +Q
Sbjct  24  TFDDLNLKPNIVRGIFGYGYESPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQ  83

Query  63  IVYETLKDQQ  72
            + E  K  Q
Sbjct  84  RIDENEKSTQ  93


>sp|B5DG42|IF4A3_SALSA Eukaryotic initiation factor 4A-III OS=Salmo 
salar OX=8030 GN=eif4a3 PE=2 SV=1
Length=406

 Score = 125 bits (314),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 102/358 (28%), Positives = 165/358 (46%), Gaps = 63/358 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+RELA Q    +     Y++   ++    IGG    + +  L+ G  +V GTP
Sbjct  103  QALILAPTRELAGQIQKVLLALGDYMN---VQCHSCIGGTNVGEDIRKLDYGQHVVAGTP  159

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++ LVLDEAD +L++G+ + I  ++  +P  T      QV + S
Sbjct  160  GRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT------QVCLIS  213

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL   ++ +++ K M  P  + +K ++   + +    V V        ER         
Sbjct  214  ATL-PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV--------ER---------  255

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W      L   Y    I      QA+IFC TK   D L +   
Sbjct  256  ---------------EEWK--FDTLCDLYDTLTIT-----QAVIFCNTKRKVDWLTEKM-  292

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
                    +   F+   +HGD    ER+  ++ F+ G  R LI TDV ARG+D+  V  +
Sbjct  293  --------REANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLI  344

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            IN  LP+ ++ Y+HRIGR GR  R G+AI+ V  +  ++   +     +  Y+T++ E
Sbjct  345  INYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI-----EQYYSTQIDE  397


 Score = 40.8 bits (94),  Expect = 0.043, Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 39/70 (56%), Gaps = 0/70 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F  MG+  ++ + +    +  P+ IQ  +I  I+ G DV+  +++G+GKT  F + V+Q
Sbjct  34   TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQ  93

Query  63   IVYETLKDQQ  72
             +   +++ Q
Sbjct  94   CLDIQVRETQ  103


>sp|O42226|I4A3B_XENLA Eukaryotic initiation factor 4A-III-B OS=Xenopus 
laevis OX=8355 GN=eif4a3-b PE=2 SV=1
Length=414

 Score = 125 bits (314),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 101/358 (28%), Positives = 165/358 (46%), Gaps = 63/358 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P++ELA Q    +     Y++   ++    IGG    + +  L+ G  +V GTP
Sbjct  111  QALILAPTKELARQIQKVLLALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHVVAGTP  167

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++ LVLDEAD +L++G+ + I  ++  +P  T      QV + S
Sbjct  168  GRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT------QVCLIS  221

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL   ++ +++ K M  P  + +K ++   + +    V V        ER         
Sbjct  222  ATL-PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV--------ER---------  263

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W      L   Y    I      QA+IFC TK   D L +   
Sbjct  264  ---------------EEWK--FDTLCDLYDTLTIT-----QAVIFCNTKRKVDWLTEKM-  300

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
                    +   F+   +HGD    ER+  ++ F+ G  R LI TDV ARG+D+  V  +
Sbjct  301  --------REANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLI  352

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            IN  LP+ ++ Y+HRIGR GR  R G+AI+ V  +  ++   +     +  Y+T++ E
Sbjct  353  INYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI-----EQYYSTQIDE  405


 Score = 41.2 bits (95),  Expect = 0.027, Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 0/70 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F  MG+  ++ + +    +  P+ IQ ++I  I+ G DV+  +++G+GKT  F + V+Q
Sbjct  42   TFDTMGLREDLLRGIYAYGFEKPSAIQQKAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQ  101

Query  63   IVYETLKDQQ  72
             +   +++ Q
Sbjct  102  CLDIQIRETQ  111


>sp|A6RW79|PRP5_BOTFB Pre-mRNA-processing ATP-dependent RNA helicase 
prp5 OS=Botryotinia fuckeliana (strain B05.10) OX=332648 
GN=prp5 PE=3 SV=1
Length=1151

 Score = 129 bits (325),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 95/354 (27%), Positives = 164/354 (46%), Gaps = 62/354 (18%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  LI+ P+RELA Q     K F K +    LR +   GG   +DQ++ L+ G +I+V
Sbjct  626  DGPIGLIMTPTRELATQIHKECKPFLKAMG---LRAVCAYGGAIIKDQIADLKRGAEIIV  682

Query  345  GTPGRLDDLVS--TGKL-NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL  401
             TPGR+ +L++  +G++ NL +V ++VLDEAD +   G+   + ++ N I          
Sbjct  683  CTPGRMIELLAANSGRVTNLQRVTYVVLDEADRMFDMGFEPQVMKVFNNI------RPNR  736

Query  402  QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTD--RLWERL  459
            Q I+ SAT+    +  L++K +  P  + + G   V   +  +V     K    RL E L
Sbjct  737  QTILFSATMPRI-MDALAKKTLQSPVEIVVGGRSVVAPEITQIVEVREEKEKFHRLLELL  795

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
            G+ +   +D                                       + +IF   +   
Sbjct  796  GELYNTDEDA--------------------------------------RTLIFVDRQEKA  817

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            D+L +  +++G         + C+ +HG +   +R   ++ FK G V  +I T VAARG+
Sbjct  818  DDLLKDLMRKG---------YPCMSIHGGKDQVDRDSTIDDFKAGVVPIMIATSVAARGL  868

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
            D+  +  V+N   P+  ++YVHR GR GRA   G A++ +  E+E+    +  +
Sbjct  869  DVKQLKLVVNFDAPNHLEDYVHRAGRTGRAGNTGTAVTFITEEQEQYSVGIAKA  922


 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 4/56 (7%)

Query  17   VEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQ  72
            + ++ +  PT IQ ++IP I+ G DV+  A+TGSGKT AF +P    ++  ++DQ+
Sbjct  569  ITKLGYERPTSIQMQAIPAIMSGRDVIGVAKTGSGKTIAFLLP----MFRHIRDQR  620


>sp|A5DB98|IF4A_PICGU ATP-dependent RNA helicase eIF4A OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=TIF1 PE=3 
SV=1
Length=396

 Score = 125 bits (313),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 105/360 (29%), Positives = 166/360 (46%), Gaps = 63/360 (18%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            A +ALI+ P+RELA Q  N I     Y++         IGG + +D +   ++GV IVVG
Sbjct  90   ATQALILAPTRELALQIQNVITHIGLYLNVTVHAS---IGGTSMKDDIEAFKSGVQIVVG  146

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGR+ D++        +V+  ++DEAD +LS G+ + I  +   +P+ T      QV++
Sbjct  147  TPGRVFDMIERRFFRTDKVKMFIMDEADEMLSSGFKEQIYNIFRLLPETT------QVVL  200

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT+   DV +++ K M+ P  + +K                  K +   E + + +I 
Sbjct  201  LSATMPQ-DVLEVTTKFMNNPVRILVK------------------KDELTLEGIKQFYI-  240

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
              +V  +D                   K +          + QA+IFC T+   + L   
Sbjct  241  --NVEQED------------------FKFDCLCDLYDSISVTQAVIFCNTRSKVEFLTTK  280

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
                      K   F+   +H D    +R   +  F+ G  R LI TD+ ARGID+  V 
Sbjct  281  L---------KAENFTVSAIHADLPQSDRDTIMNEFRSGSSRILIATDLLARGIDVQQVS  331

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
             VIN  LP  K+NY+HRIGR GR  R G+AI+ V  E   +   +     +  Y+T+++E
Sbjct  332  LVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDEDVGMMREI-----EKFYSTQIEE  386


 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 39/70 (56%), Gaps = 0/70 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +F ++ + P I + +    +  P+ IQ  +I  I  G DVL  A++G+GKT  F+I  +Q
Sbjct  23  SFDDLNLKPNIVRGIFGYGYESPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQ  82

Query  63  IVYETLKDQQ  72
            + E LK  Q
Sbjct  83  RIDENLKATQ  92


>sp|Q8SRB2|DBP2_ENCCU ATP-dependent RNA helicase DBP2 OS=Encephalitozoon 
cuniculi (strain GB-M1) OX=284813 GN=DBP2 PE=3 SV=1
Length=495

 Score = 126 bits (317),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 148/325 (46%), Gaps = 58/325 (18%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  L++ P+REL  Q    + +F    +   LR   + GG +++ Q+  L  G ++V+
Sbjct  159  DGPIVLVLAPTRELVMQIKKVVDEFCGMFN---LRSTAVYGGASSQPQIRALHEGAEVVI  215

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL DL   G   LS+V FLVLDEAD +L  G+   + ++   IP+  ++    Q +
Sbjct  216  ATPGRLIDLHDQGHAPLSRVTFLVLDEADRMLDMGFEPQLRKI---IPKTNAN---RQTL  269

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT    +V+ L+E  M+    V +  E+          +  N K  ++ E       
Sbjct  270  MWSATWPR-EVRGLAESYMNEYIQVVVGNEE----------LKTNSKIKQIVEVCSGREK  318

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                +   DN                              K D+ I+FC  K  CD+LE 
Sbjct  319  EDKLIGVLDN-----------------------------FKGDKVIVFCNMKRTCDDLE-  348

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
            Y + + G        +    LHGD+  + R + L+ F+ G    LI T+VA RG+D++ V
Sbjct  349  YVLNRSG--------YGAAALHGDKSQNIRDKVLDDFRSGRRPILIATEVAGRGLDVNDV  400

Query  585  PYVINVTLPDEKQNYVHRIGRVGRA  609
              VIN   P   ++YVHRIGR  R 
Sbjct  401  KLVINFDFPGSCEDYVHRIGRTARG  425


 Score = 48.1 bits (113),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 28/78 (36%), Positives = 42/78 (54%), Gaps = 4/78 (5%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F E G   E+  ++ E  +  PT IQ +  P+ L G D++  A+TGSGKT +F +P +  
Sbjct  89   FEEAGFSSEVVSSLVEKGFSEPTAIQGQGWPMALSGRDMVGIAQTGSGKTLSFILPALV-  147

Query  64   VYETLKDQQEGKKGKTTI  81
                 KDQQ  ++G   I
Sbjct  148  ---HAKDQQPLRRGDGPI  162


>sp|Q26696|DDX17_TRYBB Putative DEAD-box RNA helicase HEL64 OS=Trypanosoma 
brucei brucei OX=5702 GN=HEL64 PE=3 SV=1
Length=568

 Score = 127 bits (319),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 163/342 (48%), Gaps = 59/342 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  +++ P+RELA+Q    I++  K +    +    + GG     QL +L  GV I+V
Sbjct  174  DGPMVVVLAPTRELAQQ----IEEETKKVIPGDVYCGCVYGGAPKGPQLGLLRRGVHILV  229

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D +   ++NL +V +LVLDEAD +L  G+   + ++  QI          Q +
Sbjct  230  ATPGRLIDFLDIKRINLHRVTYLVLDEADRMLDMGFEPQVRKICGQI------RPDRQTV  283

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT    ++++L+ +      W+ +        +V    +  N       + + +  I
Sbjct  284  MFSATWPR-EIQRLAAEFQK--QWIRI--------SVGSTELQAN-------KDVTQRFI  325

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
             T +   +D  R                      + ++EH+ ++ ++FC+ K   D LE+
Sbjct  326  LTQEFAKQDELR----------------------KLMQEHREERVLVFCKMKRTADELER  363

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
               + G         +  + +HGD++  +R+  L RF+K     L+ TDVAARG+DI  +
Sbjct  364  QLRRWG---------YDAMAIHGDKEQRQREFILARFRKDPRLCLVATDVAARGLDIKQL  414

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
              VIN   P +  +YVHRIGR GRA   G  + L+  ++ ++
Sbjct  415  ETVINYDFPMQIDDYVHRIGRTGRAGGEGRCVYLITKKEAQI  456


 Score = 45.8 bits (107),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 22/63 (35%), Positives = 41/63 (65%), Gaps = 2/63 (3%)

Query  1    MAAFSEM-GVMPE-IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSI  58
            M++F  + G++P  + + +   ++  PT +QA+S P++L G D++  A+TGSGKT  F +
Sbjct  99   MSSFDHLCGIVPPYLLKKLTAQNFTAPTPVQAQSWPVLLSGRDLVGVAKTGSGKTLGFMV  158

Query  59   PVI  61
            P +
Sbjct  159  PAL  161


>sp|Q2HEB0|PRP28_CHAGB Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 
/ DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=PRP28 
PE=3 SV=1
Length=705

 Score = 128 bits (322),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 162/374 (43%), Gaps = 77/374 (21%)

Query  280  TKFLPN-APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            T+F  N  P ALI+ P+REL +Q     ++F   +       + I+GG +  +Q   L N
Sbjct  338  TEFNKNDGPYALILAPTRELVQQIETEARKFAGPLG---FTVVSIVGGHSLEEQAFALRN  394

Query  339  GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV----  394
            G +I+V TPGRL D +    L  SQ  ++++DEAD ++ QG+ + + ++ + +P      
Sbjct  395  GAEIIVATPGRLVDCLERRLLVFSQCCYIIMDEADRMIDQGFEEPLTKILDALPVANEKP  454

Query  395  -TSDGKRLQVI--------------VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPD  439
             T D +  Q++              + +AT+    V+K+++K +  P  V +       D
Sbjct  455  DTEDAENSQLMSRYLGGKDRYRQTMMYTATMPPL-VEKIAKKYLRRPAIVTIGNAGEAVD  513

Query  440  TVHHVVVPV---NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEY  496
            TV   V  V   + +  RL E L     +                               
Sbjct  514  TVEQRVEFVSGEDKRKRRLQEILNSGQFKP------------------------------  543

Query  497  AVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQ  556
                         I+F   K +C+ + +         D K   +S V LHG +   +R+ 
Sbjct  544  -----------PVIVFVNIKRNCEMVAK---------DIKSWGYSTVTLHGSKTQEQREA  583

Query  557  NLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAI  616
            +L   + G    L+ TD+A RGID+  V  V+N  +P   + Y HRIGR GRA + G+AI
Sbjct  584  SLASVRNGQANILVATDLAGRGIDVADVSLVVNFNMPSSIEAYTHRIGRTGRAGKSGVAI  643

Query  617  SLVATEKEKVWYHV  630
            + +  E   V Y +
Sbjct  644  TFLGNEDSDVMYDL  657


 Score = 43.1 bits (100),  Expect = 0.009, Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 38/66 (58%), Gaps = 0/66 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M +++E  +   + + VE + +  PT IQ  +IP+     D++  A TGSGKT AF +P+
Sbjct  268  MRSWAESNLPRRLLEIVENVGYDEPTPIQRAAIPIAQQARDLIGVAVTGSGKTAAFLLPL  327

Query  61   IQIVYE  66
            +  + E
Sbjct  328  LVYISE  333


>sp|Q9WTM2|DDX6_CAVPO Probable ATP-dependent RNA helicase DDX6 
(Fragment) OS=Cavia porcellus OX=10141 GN=DDX6 PE=2 SV=1
Length=472

 Score = 126 bits (316),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 96/333 (29%), Positives = 148/333 (44%), Gaps = 59/333 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +A+++ P+RELA Q      Q  K++   K+  +   GG   RD +  L++ V +V+ TP
Sbjct  155  QAMVIVPTRELALQVSQICIQVSKHMGGAKV--MATTGGTNLRDDIMRLDDTVHVVIATP  212

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ DL+  G   +  V+ +VLDEAD LLSQ   DF+  M + I  +    K  Q+++ S
Sbjct  213  GRILDLIKKGVAKVDHVQMIVLDEADKLLSQ---DFVQIMEDIILTLP---KNRQILLYS  266

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT     V+K     +  P  ++L  E ++     +           + ER         
Sbjct  267  ATF-PLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAY--------VTER--------Q  309

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
             VH  +   P   +                         +Q+IIFC +    + L +   
Sbjct  310  KVHCLNTLFPRLQT-------------------------NQSIIFCNSSQRVELLAKKIS  344

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
            Q G         +SC  +H   +   R +    F+ G  R L+CTD+  RGIDI  V  V
Sbjct  345  QLG---------YSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVV  395

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            IN   P   + Y+HRIGR GR   +GLAI+L+ 
Sbjct  396  INFDFPKLAETYLHRIGRSGRFGHLGLAINLIT  428


 Score = 53.9 bits (128),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 24/59 (41%), Positives = 38/59 (64%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +  +  E+   + EM W  P+ IQ ESIP+ L G D+L  A+ G+GK+GA+ IP+++
Sbjct  87   FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALTGRDILARAKNGTGKSGAYLIPLLE  145


>sp|A5DVM3|IF4A_LODEL ATP-dependent RNA helicase eIF4A OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=TIF1 PE=3 SV=1
Length=397

 Score = 124 bits (312),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 100/335 (30%), Positives = 156/335 (47%), Gaps = 58/335 (17%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            + +ALI+ P+RELA Q  N I     Y++         IGG +  D +   ++GV IVVG
Sbjct  91   STQALILAPTRELALQIKNVITSIGLYLNVTVHAS---IGGTSMSDDIEAFKSGVQIVVG  147

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGR+ D++        +V+  +LDEAD +LS G+ + I  +   +P+ T      QV++
Sbjct  148  TPGRVFDMIERRYFRTDKVKMFILDEADEMLSSGFKEQIYNIFRLLPETT------QVVL  201

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT+   DV +++ K M+ P  + +K ++   + +    +                   
Sbjct  202  LSATMPQ-DVLEVTTKFMNNPVRILVKKDELTLEGIKQYFI-------------------  241

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
              +V  +D                   K +  V       + QA+IFC T+   + L   
Sbjct  242  --NVEVED------------------YKFDCLVDLYDSISVTQAVIFCNTRSKVEFLTNK  281

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
              +Q         +F+   +H D    ER   ++ F+ G  R LI TD+ ARGID+  V 
Sbjct  282  LREQ---------KFTVSAIHADLPQGERDTIMKEFRSGSSRILISTDLLARGIDVQQVS  332

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
             VIN  LP  K+NY+HRIGR GR  R G+AI+ V 
Sbjct  333  LVINYDLPANKENYIHRIGRGGRFGRKGVAINFVT  367


 Score = 42.7 bits (99),  Expect = 0.011, Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 37/69 (54%), Gaps = 0/69 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F ++ + P I + +    +  P+ IQ  +I  I  G DVL  A++G+GKT  F+I  +Q 
Sbjct  25  FDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQR  84

Query  64  VYETLKDQQ  72
           + E  K  Q
Sbjct  85  IDENEKSTQ  93


>sp|O49289|RH29_ARATH Putative DEAD-box ATP-dependent RNA helicase 
29 OS=Arabidopsis thaliana OX=3702 GN=RH29 PE=3 SV=1
Length=845

 Score = 128 bits (322),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 156/339 (46%), Gaps = 64/339 (19%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+R+LAEQTL   K+  K+ D   LR  L++GG +  DQ   L  G D+++ TP
Sbjct  100  RALILSPTRDLAEQTLKFTKELGKFTD---LRVSLLVGGDSMEDQFEELTKGPDVIIATP  156

Query  348  GRLDDLVS-TGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            GRL  L+S    + L  V ++V DEAD L   G+++   ++H  + Q++ +    Q ++ 
Sbjct  157  GRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAE---QLHQILTQLSENR---QTLLF  210

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPK---TDRLWERLGKSH  463
            SATL S  + + ++  +  P  V L  E+ +   +    + V P+   +  L+  L + H
Sbjct  211  SATLPS-ALAEFAKAGLREPQLVRLDVENKISPDLKLSFLTVRPEEKYSALLY--LVREH  267

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
            I +D                                        Q +IF  TK   + + 
Sbjct  268  ISSD---------------------------------------QQTLIFVSTKHHVEFVN  288

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
              F  +   P         VC +GD     RK ++ RF+      LI TD+AARGIDI  
Sbjct  289  SLFKLENIEP--------SVC-YGDMDQDARKIHVSRFRARKTMLLIVTDIAARGIDIPL  339

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            +  VIN   P   + +VHR+GR  RA R G A S V  E
Sbjct  340  LDNVINWDFPPRPKIFVHRVGRAARAGRTGCAYSFVTPE  378


 Score = 57.4 bits (137),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 40/59 (68%), Gaps = 0/59 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           F  + + P +  A+++  + +PT IQ +++PLIL G DV+  A TGSGKT AF IP+++
Sbjct  30  FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLE  88


>sp|A4R5B8|DBP10_PYRO7 ATP-dependent RNA helicase DBP10 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=DBP10 PE=3 SV=1
Length=914

 Score = 128 bits (322),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 159/339 (47%), Gaps = 36/339 (11%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ PSRELA QTL  +K+F K  D   L+ +L++GG +  DQ   +    DI++ TP
Sbjct  162  RALIMSPSRELALQTLKVVKEFGKGTD---LKTVLLVGGDSLEDQFGFMTTNPDIIIATP  218

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR   L     L+LS ++++V DEAD L   G++  +  + + +P         Q ++ S
Sbjct  219  GRFLHLKVEMSLDLSSIKYVVFDEADRLFEMGFATQLTEILHSLPPSR------QTLLFS  272

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS-HIRT  466
            ATL    V+  +   +  P+ V L  E  +   +      V     +  E+ G   HI  
Sbjct  273  ATLPRSLVE-FARAGLQDPSLVRLDAETKISPDLESAFFSV-----KGAEKEGALLHILQ  326

Query  467  DDVHAKDNTRPGANSPEMWSE-----AIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
            D +     T      PE + E     + K  +G     A ++      IIF  TK   + 
Sbjct  327  DVIKMPTGT------PEGFKEDKDEGSKKRKRGPDRPNAKEKPTEHSTIIFTATKFHVEY  380

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            L    +Q G         ++    +G      RK  +E F++G    L+ TDVAARGIDI
Sbjct  381  LTSILVQAG---------YAVSHAYGALDQTARKIQVEDFRRGKTNILVVTDVAARGIDI  431

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
              +  VIN    D+ + +VHR+GR  RA + G + SLV+
Sbjct  432  PVLANVINYDFCDQPKVFVHRVGRTARAGQKGWSYSLVS  470


 Score = 62.0 bits (149),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 30/59 (51%), Positives = 39/59 (66%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  MG+ P + QA+    + +PT IQ +SIPLIL   DV+  A TGSGKT AF IP+I+
Sbjct  92   FQAMGLNPSLLQAITRKGFAVPTPIQRKSIPLILDRRDVVGMARTGSGKTAAFVIPMIE  150


>sp|Q64060|DDX4_RAT Probable ATP-dependent RNA helicase DDX4 OS=Rattus 
norvegicus OX=10116 GN=Ddx4 PE=1 SV=1
Length=713

 Score = 128 bits (321),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 97/349 (28%), Positives = 161/349 (46%), Gaps = 55/349 (16%)

Query  277  VTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
            +T ++F     P+ +IV P+REL  Q      + +K+     +R ++I GG      +  
Sbjct  340  ITASRFKELQEPECIIVAPTRELINQIY---LEARKFSFGTCVRAVVIYGGTQFGHSIRQ  396

Query  336  LENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
            +  G +I+  TPGRL D++   K+ L QV++LVLDEAD +L  G+   + ++ +  P + 
Sbjct  397  IVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLIS-CPGMP  455

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL  455
            S  +R Q ++ SAT    ++++L+ + +                           K++ L
Sbjct  456  SKEQR-QTLLFSATFPE-EIQRLAGEFL---------------------------KSNYL  486

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRT  515
            +  +G+      DV             +   +   + K    V  ++    ++ ++F  T
Sbjct  487  FVAVGQVGGACRDVQ------------QSILQVGPVFKKRKLVEILRNIGDERPMVFVET  534

Query  516  KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA  575
            K   D +  +  Q+         + S   +HGDR+  ER+Q L  F+ G    L+ T VA
Sbjct  535  KKKADFIATFLCQE---------KISTTSIHGDREQREREQALGDFRCGKCPVLVATSVA  585

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            ARG+DI  V +VIN  LP     YVHRIGR GR    G AIS   TE +
Sbjct  586  ARGLDIENVQHVINFNLPSTIDEYVHRIGRTGRCGNTGRAISFFDTESD  634


 Score = 45.8 bits (107),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (59%), Gaps = 0/58 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            F E  +   +   + +  +   T +Q  SIP++L G D++  A+TGSGKT AF +P++
Sbjct  275  FEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPIL  332


>sp|Q0I1X0|RHLB_HISS1 ATP-dependent RNA helicase RhlB OS=Histophilus 
somni (strain 129Pt) OX=205914 GN=rhlB PE=3 SV=1
Length=419

 Score = 124 bits (312),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 103/336 (31%), Positives = 160/336 (48%), Gaps = 57/336 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+ALI+ P+REL  Q  N+       +    L+  L  GG     QL V++ G+DI++GT
Sbjct  83   PRALILAPTRELVVQIANDANFL---VQATGLKTGLAYGGEGYDKQLKVIDQGIDILIGT  139

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
             GR+ D V  G + L  ++ +VLDEAD +   G+   I  +  + P      +RL ++  
Sbjct  140  TGRVIDYVKQGIIRLDYIQVVVLDEADRMFDLGFIRDIRYLLRKCP---VPQQRLTMLF-  195

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SATL S+ V++L+ + M+ P +V+++              P+     R+ E L       
Sbjct  196  SATL-SYKVRELAFEHMNDPQYVEIE--------------PLQKTGHRIREELFYP----  236

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                        +N  +M +  + +L+ E+  R I         IF  TK  C+ +  Y 
Sbjct  237  ------------SNQDKM-ALLMTLLEEEWPERCI---------IFSNTKHRCEEIWGYL  274

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                      GH+     L GD    +R   L++F  G +  L+ TDVAARG+ I  V +
Sbjct  275  -------SADGHRVGL--LTGDVMQKKRLSLLKQFTDGTLDILVATDVAARGLHIPDVTH  325

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V N  LPD+ ++YVHRIGR GRA   G++IS    E
Sbjct  326  VFNYDLPDDCEDYVHRIGRTGRAGESGISISFACEE  361


 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 22/53 (42%), Positives = 34/53 (64%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS++ +   + QA++E  +   T IQA S+P+ L G D+   A+TG+GKT AF
Sbjct  11  FSDLALHRSVQQAIKEKGFEFCTPIQALSLPITLKGQDIAGQAQTGTGKTIAF  63


>sp|P54475|CSHB_BACSU DEAD-box ATP-dependent RNA helicase CshB 
OS=Bacillus subtilis (strain 168) OX=224308 GN=cshB PE=1 SV=1
Length=438

 Score = 125 bits (313),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 153/332 (46%), Gaps = 58/332 (17%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + +I  P+RELA Q      +  +  +  ++R    IGG   +  +  L+    +VVGTP
Sbjct  74   QVVITAPTRELANQIYQEALKITQGEEGSQIRSKCFIGGTDKQKSIDKLKIQPHLVVGTP  133

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ DL+    L++ +   LV+DEAD +L  G+   ++ + +++P+       LQ++V S
Sbjct  134  GRIADLIKEQALSVHKAESLVIDEADLMLDMGFLADVDYIGSRMPE------DLQMLVFS  187

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPK-TDRLWERLGKSHIRT  466
            AT+    +K   +K M  P +  ++ +      + H+++P   +  D+L           
Sbjct  188  ATIPE-KLKPFLKKYMENPKYAHVEPKQVTAAKIEHILIPSKHRDKDKLLF---------  237

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
             D+ +  N   G                               I+F  TK   D++ QY 
Sbjct  238  -DIMSHLNPYLG-------------------------------IVFANTKNTADHIAQYL  265

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
              +G              LHG   P ERK+ +++    +  ++I TD+AARGIDI GV +
Sbjct  266  TGKG---------MKIGLLHGGLTPRERKKVMKQINDLEFTYIIATDLAARGIDIKGVSH  316

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            VIN  LPD+   YVHR+GR  RA   G A+++
Sbjct  317  VINYELPDDLDFYVHRVGRTARAGSSGQAMTI  348


 Score = 42.7 bits (99),  Expect = 0.012, Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (57%), Gaps = 0/58 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
           F    + P I  AV  + +  PTDIQ   IP +L    V+  ++TG+GKT A+ +P++
Sbjct  6   FELYELKPFIIDAVHRLGFYEPTDIQKRLIPAVLKKESVIGQSQTGTGKTHAYLLPLL  63


>sp|Q5BDW4|PRP5_EMENI Pre-mRNA-processing ATP-dependent RNA helicase 
prp5 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 
/ CBS 112.46 / NRRL 194 / M139) OX=227321 GN=prp5 PE=3 SV=1
Length=1173

 Score = 129 bits (323),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 169/352 (48%), Gaps = 60/352 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P  LI+ P+RELA Q   + K F K ++   LR +   GG   +DQ++ L+ G +I+V T
Sbjct  615  PIGLIMTPTRELATQIHKDCKPFLKALN---LRAVCAYGGAPIKDQIAELKRGAEIIVCT  671

Query  347  PGRLDDLVS--TGKL-NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            PGR+ DL++   G++ NL +V ++VLDEAD +   G+   + ++   +  V  D    Q 
Sbjct  672  PGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKI---LSNVRPD---RQT  725

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTD--RLWERLGK  461
            ++ SAT    +++ L+ K +  P  + + G   V   +  +V   N +    RL E LG 
Sbjct  726  VLFSATFPR-NMEALARKTLTKPIEIVVGGRSVVAPEITQIVEVCNEEKKFVRLLELLG-  783

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
                  ++++ D                             E++  +++IF   +   D 
Sbjct  784  ------NLYSTD-----------------------------ENEDARSLIFVDRQEAADT  808

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            L +  +++G         + C+ +HG +   +R   +E FK G    LI T VAARG+D+
Sbjct  809  LLRELMRKG---------YPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIATSVAARGLDV  859

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
              +  V+N   P+  ++YVHR GR GRA   G A++ +  ++E+    +  +
Sbjct  860  KQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERYSVDIAKA  911


 Score = 47.4 bits (111),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 26/69 (38%), Positives = 44/69 (64%), Gaps = 4/69 (6%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            +S+ G+  +    ++++ +   T IQA++IP I+ G DV+  A+TGSGKT AF IP    
Sbjct  543  WSQCGLGIQTLDVIDKLGFASLTSIQAQAIPAIMSGRDVIGVAKTGSGKTMAFLIP----  598

Query  64   VYETLKDQQ  72
            ++  +KDQ+
Sbjct  599  MFRHIKDQR  607


>sp|A4R715|DHH1_PYRO7 ATP-dependent RNA helicase DHH1 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=DHH1 PE=3 SV=2
Length=535

 Score = 126 bits (316),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 106/380 (28%), Positives = 167/380 (44%), Gaps = 75/380 (20%)

Query  258  LSKAPDG------YIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKK  311
            L++A +G      ++V +  + N +V++ +        LI+ P+RELA QT    K   K
Sbjct  88   LARAKNGTGKTAAFVVPALETINPKVSKIQ-------CLILVPTRELAMQTSQVCKTLGK  140

Query  312  YIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDE  371
            ++    +  ++  GG   RD +  L++ V IVVGTPGR+ DL      +LS+    ++DE
Sbjct  141  HLG---INVMVTTGGTTLRDDILRLQDPVHIVVGTPGRILDLAGKNVADLSECPMFIMDE  197

Query  372  ADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL  431
            AD LLS  ++  I ++    P      K  QV++ SAT     VK+ S+K M  P  ++L
Sbjct  198  ADKLLSIEFTPVIEQLLQFHP------KDRQVMLFSATF-PISVKEFSDKNMTNPYEINL  250

Query  432  KGEDSVPD-TVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIK  490
              E ++   T ++  V    K   L     K  I                          
Sbjct  251  MDELTLRGITQYYAFVEEKQKVHCLNTLFSKLQI--------------------------  284

Query  491  ILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRK  550
                            +Q+IIFC +    + L +   + G         +SC   H   +
Sbjct  285  ----------------NQSIIFCNSTNRVELLAKKITELG---------YSCFYSHAKMQ  319

Query  551  PHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAE  610
               R +    F+ G  R L+C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR  
Sbjct  320  QQARNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYG  379

Query  611  RMGLAISLVATEKEKVWYHV  630
             +GLAI+L++ E     Y++
Sbjct  380  HLGLAINLISWEDRFNLYNI  399


 Score = 49.7 bits (117),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 0/61 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F   G+  ++   + E  +  P+ IQ ESIP+ L G D+L  A+ G+GKT AF +P ++ 
Sbjct  49   FENFGLKRDLLMGIFEAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVVPALET  108

Query  64   V  64
            +
Sbjct  109  I  109


>sp|Q7Y183|RH10_ORYSJ DEAD-box ATP-dependent RNA helicase 10 OS=Oryza 
sativa subsp. japonica OX=39947 GN=RH10 PE=2 SV=1
Length=472

 Score = 125 bits (314),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 107/350 (31%), Positives = 157/350 (45%), Gaps = 65/350 (19%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P A  A ++ P+RELA Q     +QF+       L   +++GGV    Q   L     IV
Sbjct  109  PQALFACVLSPTRELAFQI---GQQFEALGSAIGLSCTVLVGGVDRVQQAVSLAKRPHIV  165

Query  344  VGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            VGTPGRL D L  T   +L+++++LVLDEAD LL+  +   ++ + N IP      K  +
Sbjct  166  VGTPGRLLDHLTDTKGFSLNKLKYLVLDEADKLLNVEFQKALDDILNVIP------KERR  219

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHH--VVVPVNPKTDRLWERLG  460
              + SAT+ +  V KL    +  P  V++  + S  DT+      VP + K   L   L 
Sbjct  220  TFLFSATMTN-KVSKLQRACLRNPVKVEVASKYSTVDTLRQEFYFVPADYKDCFLVHVL-  277

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
                         N  PG+                              +IF RT   C+
Sbjct  278  -------------NELPGS----------------------------MIMIFVRT---CE  293

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
            +     +        +  +F  + + G     +R   L RFK  D   LICTDVA+RG+D
Sbjct  294  STRLLALTL------RNLRFKAISISGQMSQDKRLGALNRFKTKDCNILICTDVASRGLD  347

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
            I GV  VIN  +P   ++YVHR+GR  RA   G A+SLV  + E +W+ +
Sbjct  348  IQGVDVVINYDIPMNSKDYVHRVGRTARAGNTGYAVSLV-NQYEAMWFKM  396


 Score = 73.6 bits (179),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 34/70 (49%), Positives = 49/70 (70%), Gaps = 0/70 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F+E+GV+PE+  A + M W  PT IQAE+IP  L G D++   +TGSGKTGAF++P+I
Sbjct  41   STFAELGVVPELVAACDAMGWKEPTRIQAEAIPHALEGRDLIGLGQTGSGKTGAFALPII  100

Query  62   QIVYETLKDQ  71
            Q + +  K Q
Sbjct  101  QALLKQDKPQ  110


>sp|A2XKG2|RH10_ORYSI DEAD-box ATP-dependent RNA helicase 10 OS=Oryza 
sativa subsp. indica OX=39946 GN=RH10 PE=1 SV=1
Length=472

 Score = 125 bits (314),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 107/350 (31%), Positives = 157/350 (45%), Gaps = 65/350 (19%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P A  A ++ P+RELA Q     +QF+       L   +++GGV    Q   L     IV
Sbjct  109  PQALFACVLSPTRELAFQI---GQQFEALGSAIGLSCTVLVGGVDRVQQAVSLAKRPHIV  165

Query  344  VGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            VGTPGRL D L  T   +L+++++LVLDEAD LL+  +   ++ + N IP      K  +
Sbjct  166  VGTPGRLLDHLTDTKGFSLNKLKYLVLDEADKLLNVEFQKALDDILNVIP------KERR  219

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHH--VVVPVNPKTDRLWERLG  460
              + SAT+ +  V KL    +  P  V++  + S  DT+      VP + K   L   L 
Sbjct  220  TFLFSATMTN-KVSKLQRACLRNPVKVEVASKYSTVDTLRQEFYFVPADYKDCFLVHVL-  277

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
                         N  PG+                              +IF RT   C+
Sbjct  278  -------------NELPGS----------------------------MIMIFVRT---CE  293

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
            +     +        +  +F  + + G     +R   L RFK  D   LICTDVA+RG+D
Sbjct  294  STRLLALTL------RNLRFKAISISGQMSQDKRLGALNRFKTKDCNILICTDVASRGLD  347

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
            I GV  VIN  +P   ++YVHR+GR  RA   G A+SLV  + E +W+ +
Sbjct  348  IQGVDVVINYDIPMNSKDYVHRVGRTARAGNTGYAVSLV-NQYEAMWFKM  396


 Score = 73.6 bits (179),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 34/70 (49%), Positives = 49/70 (70%), Gaps = 0/70 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F+E+GV+PE+  A + M W  PT IQAE+IP  L G D++   +TGSGKTGAF++P+I
Sbjct  41   STFAELGVVPELVAACDAMGWKEPTRIQAEAIPHALEGRDLIGLGQTGSGKTGAFALPII  100

Query  62   QIVYETLKDQ  71
            Q + +  K Q
Sbjct  101  QALLKQDKPQ  110


>sp|A5DU73|PRP28_LODEL Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Lodderomyces elongisporus (strain ATCC 11503 
/ CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 
GN=PRP28 PE=3 SV=1
Length=597

 Score = 127 bits (318),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 101/352 (29%), Positives = 163/352 (46%), Gaps = 65/352 (18%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN-----G  339
            N P AL++ P+RELA Q     ++F K +       L IIGG   ++ +  ++N     G
Sbjct  262  NEPLALVLAPTRELALQITQEAEKFGKQLG---FNVLSIIGGRQYQETMDQIDNMIVGRG  318

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ-----V  394
            V IVVGTPGRL D V    LN S+  +LV+DEAD ++  G+   +N++ N +P+      
Sbjct  319  VHIVVGTPGRLLDSVERKILNFSKCYYLVMDEADRMIDMGFEKDLNKLINLLPKNEKLST  378

Query  395  TSDGKRLQV-----IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV--HHVVVP  447
            T DGK   +     ++ +AT+ S  ++K+++  +  P ++ + G     D +  H   + 
Sbjct  379  TIDGKLFHLTKRLTMMYTATI-SPPIEKITKSYLIDPAYIYIGGAGEALDNIDQHFDYLS  437

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
               ++ RL                              S+ IK+++G       + ++  
Sbjct  438  TYAESARL------------------------------SKLIKVVQGHK-----RRNRNA  462

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
              IIF   K  CD L     Q         +    V +HG +    R++ LE F+     
Sbjct  463  LVIIFANFKHVCDVLSLELEQ---------NNLLNVVIHGSKSQEAREEALEDFRTHQAP  513

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
             L+ TDVAARGID+  V  VIN  +  +   Y+HRIGR GRA  +G + + +
Sbjct  514  ILVATDVAARGIDVPNVSLVINYQMSKKFDEYIHRIGRTGRAGNLGESYTFL  565


 Score = 48.1 bits (113),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 24/62 (39%), Positives = 39/62 (63%), Gaps = 0/62 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            ++ E G+ P+I  +++   +  PT +Q  SIP+ L   DV+  AETGSGKT AF +P++ 
Sbjct  186  SWDESGLDPKILASLKSFGFRQPTPVQRASIPISLELRDVVGVAETGSGKTLAFLLPLLH  245

Query  63   IV  64
             +
Sbjct  246  YL  247


>sp|P87206|IF4A_CANAL ATP-dependent RNA helicase eIF4A OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=TIF1 
PE=3 SV=1
Length=397

 Score = 124 bits (310),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 101/335 (30%), Positives = 154/335 (46%), Gaps = 58/335 (17%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            A +ALI+ P+RELA Q  N I     Y+   K+     IGG +  D +    +GV IVVG
Sbjct  91   ATQALILAPTRELALQIKNVITAIGLYL---KVTVHASIGGTSMSDDIEAFRSGVQIVVG  147

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGR+ D++        +V+  +LDEAD +LS G+ + I  +   +P+ T      Q+++
Sbjct  148  TPGRVLDMIERRYFKTDKVKMFILDEADEMLSSGFKEQIYNIFRLLPETT------QIVL  201

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT+   DV +++ K M+ P  + +K ++   + +    + V                 
Sbjct  202  LSATMPQ-DVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINV-----------------  243

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                             E+       L   Y   ++      QA+IFC T+   + L   
Sbjct  244  -----------------ELEDYKFDCLCDLYDSISVT-----QAVIFCNTRSKVEFLTNK  281

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
              +Q          F+   +H D    ER   ++ F+ G  R LI TD+ ARGID+  V 
Sbjct  282  LREQ---------HFTVSAIHADLPQAERDTIMKEFRSGSSRILISTDLLARGIDVQQVS  332

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
             VIN  LP  K+NY+HRIGR GR  R G+AI+ V 
Sbjct  333  LVINYDLPANKENYIHRIGRGGRFGRKGVAINFVT  367


 Score = 42.7 bits (99),  Expect = 0.011, Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 37/69 (54%), Gaps = 0/69 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F ++ + P I + +    +  P+ IQ  +I  I  G DVL  A++G+GKT  F+I  +Q 
Sbjct  25  FDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQR  84

Query  64  VYETLKDQQ  72
           + E  K  Q
Sbjct  85  INENEKATQ  93


>sp|A3GFI4|IF4A_PICST ATP-dependent RNA helicase eIF4A OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=TIF1 PE=3 SV=1
Length=397

 Score = 124 bits (310),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 100/339 (29%), Positives = 157/339 (46%), Gaps = 59/339 (17%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            + +ALI+ P+RELA Q  N I     Y++         IGG + +D +    +GV +VVG
Sbjct  91   STQALILAPTRELALQIKNVITSIGLYLNVTVHAS---IGGTSMQDDIEAFRSGVQVVVG  147

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGR+ D++        +V+  ++DEAD +LS G+ + I  +   +P+ T      QV++
Sbjct  148  TPGRVFDMIERRYFKTEKVKMFIMDEADEMLSSGFKEQIYNIFRLLPETT------QVVL  201

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT+   DV +++ K M+ P  + +K ++   + +    + V                 
Sbjct  202  LSATMPQ-DVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINV-----------------  243

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                             E+       L   Y   ++      QA+IFC T+   + L   
Sbjct  244  -----------------ELEDYKFDCLCDLYDSISVT-----QAVIFCNTRSKVEFLTTK  281

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
                      K   F+   +H D    ER   ++ F+ G  R LI TD+ ARGID+  V 
Sbjct  282  L---------KAENFTVSAIHADLPQAERDTIMKEFRSGSSRILIATDLLARGIDVQQVS  332

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
             VIN  LP  K+NY+HRIGR GR  R G+AI+ V TE++
Sbjct  333  LVINYDLPSNKENYIHRIGRGGRFGRKGVAINFV-TERD  370


 Score = 42.7 bits (99),  Expect = 0.010, Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 37/69 (54%), Gaps = 0/69 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F ++ + P I + +    +  P+ IQ  +I  I  G DVL  A++G+GKT  F+I  +Q 
Sbjct  25  FDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQR  84

Query  64  VYETLKDQQ  72
           + E  K  Q
Sbjct  85  IDENEKSTQ  93


>sp|Q1E5R1|DHH1_COCIM ATP-dependent RNA helicase DHH1 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DHH1 PE=3 SV=1
Length=512

 Score = 125 bits (315),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 103/368 (28%), Positives = 167/368 (45%), Gaps = 73/368 (20%)

Query  258  LSKAPDG------YIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKK  311
            L++A +G      +++ +    N ++++T+       ALI+ P+RELA QT    K   K
Sbjct  88   LARAKNGTGKTAAFVIPTLERTNPKISKTQ-------ALILVPTRELALQTSQVCKTLGK  140

Query  312  YIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDE  371
            ++    +  ++  GG   +D +  L + V I+VGTPGR+ DL S G  +LS+    V+DE
Sbjct  141  HLG---INVMVTTGGTGLQDDIIRLSDTVHIIVGTPGRILDLASKGVADLSECTTFVMDE  197

Query  372  ADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL  431
            AD LLS  ++  I ++ +  P      K  QV++ SAT     VK   +K M  P  ++L
Sbjct  198  ADKLLSPEFTPVIEQLLSFHP------KDRQVMLFSATF-PMIVKSFKDKHMRNPYEINL  250

Query  432  KGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
              E ++     +           + ER          VH  +          ++S+    
Sbjct  251  MDELTLRGITQYYAF--------VEER--------QKVHCLNT---------LFSKL---  282

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
                         +++Q+IIFC +    + L +   + G         +SC   H     
Sbjct  283  -------------QINQSIIFCNSTNRVELLAKKITELG---------YSCFYSHARMLQ  320

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
              R +    F+ G  R L+C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR   
Sbjct  321  QNRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGH  380

Query  612  MGLAISLV  619
            +GLAI+L+
Sbjct  381  LGLAINLI  388


 Score = 48.1 bits (113),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +  +  E+   + E  +  P+ IQ E+IP+ L G D+L  A+ G+GKT AF IP ++
Sbjct  49   FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLE  107


>sp|Q6FQU5|DHH1_CANGA ATP-dependent RNA helicase DHH1 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DHH1 PE=3 SV=1
Length=507

 Score = 125 bits (315),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 99/335 (30%), Positives = 152/335 (45%), Gaps = 60/335 (18%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N  +ALI+ P+RELA QT   I+   ++     +  ++  GG   RD +  L   V ++V
Sbjct  98   NKIQALIMVPTRELALQTSQVIRTLGRHCG---VSCMVTTGGTNLRDDILRLNETVHVLV  154

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GTPGR+ DL S    +LS+    V+DEAD +LS+ +   I ++   +P      K  Q +
Sbjct  155  GTPGRVLDLASRKVADLSECSLFVMDEADKMLSRDFKTIIEQVLTFLP------KAHQSL  208

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT     VK+   K +H P  ++L  E ++     +             E   K H 
Sbjct  209  LFSATF-PLTVKEFMVKHLHKPYEINLMEELTLKGITQYYA---------FVEERQKLHC  258

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                     NT        ++S+                 +++QAIIFC +    + L +
Sbjct  259  L--------NT--------LFSKL----------------QINQAIIFCNSTNRVELLAK  286

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
                 G         +SC   H   K  +R +    F++G VR L+C+D+  RGIDI  V
Sbjct  287  KITDLG---------YSCYYSHARMKQQDRNKVFHDFRQGKVRTLVCSDLLTRGIDIQAV  337

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
              VIN   P   + Y+HRIGR GR   +GLAI+L+
Sbjct  338  NVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLI  372


 Score = 46.6 bits (109),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 23/70 (33%), Positives = 39/70 (56%), Gaps = 0/70 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F +  +  E+   + E  +  P+ IQ E+IP+ + G D+L  A+ G+GKT AF IP ++
Sbjct  32   SFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLE  91

Query  63   IVYETLKDQQ  72
             +   L   Q
Sbjct  92   KIKPKLNKIQ  101


>sp|B0UUZ9|RHLB_HISS2 ATP-dependent RNA helicase RhlB OS=Histophilus 
somni (strain 2336) OX=228400 GN=rhlB PE=3 SV=1
Length=419

 Score = 124 bits (311),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 103/336 (31%), Positives = 160/336 (48%), Gaps = 57/336 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+ALI+ P+REL  Q  N+       +    L+  L  GG     QL V++ G+DI++GT
Sbjct  83   PRALILAPTRELVVQIANDANFL---VQATGLKTGLAYGGEGYDKQLKVIDRGIDILIGT  139

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
             GR+ D V  G + L  ++ +VLDEAD +   G+   I  +  + P      +RL ++  
Sbjct  140  TGRVIDYVKQGIIRLDYIQVVVLDEADRMFDLGFIRDIRYLLRKCP---VPQQRLTMLF-  195

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SATL S+ V++L+ + M+ P +V+++              P+     R+ E L       
Sbjct  196  SATL-SYKVRELAFEHMNDPQYVEIE--------------PLQKTGHRIREELFYP----  236

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                        +N  +M +  + +L+ E+  R I         IF  TK  C+ +  Y 
Sbjct  237  ------------SNQDKM-ALLMTLLEEEWPERCI---------IFSNTKHRCEEIWGYL  274

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                      GH+     L GD    +R   L++F  G +  L+ TDVAARG+ I  V +
Sbjct  275  -------SADGHRVGL--LTGDVMQKKRLSLLKQFTDGTLDVLVATDVAARGLHIPDVTH  325

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V N  LPD+ ++YVHRIGR GRA   G++IS    E
Sbjct  326  VFNYDLPDDCEDYVHRIGRTGRAGESGISISFACEE  361


 Score = 43.9 bits (102),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 22/53 (42%), Positives = 34/53 (64%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS++ +   + QA++E  +   T IQA S+P+ L G D+   A+TG+GKT AF
Sbjct  11  FSDLALHRIVQQAIKEKGFEFCTPIQALSLPITLKGQDIAGQAQTGTGKTIAF  63


>sp|Q4JG17|VASAL_PENVA Probable ATP-dependent RNA helicase vasa-like 
OS=Penaeus vannamei OX=6689 GN=vasa PE=2 SV=2
Length=703

 Score = 127 bits (319),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 153/343 (45%), Gaps = 55/343 (16%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P  P  L++ P+RELA Q +   ++ +K+  +   +  +  GG A   QL  + +G  I+
Sbjct  336  PAQPTGLVICPTRELAIQIM---REARKFSHSSVAKCCVAYGGAAGFHQLKTIHSGCHIL  392

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            V TPGRL D +  GK+  S +++LVLDEAD +L  G+   I  + N    +T   +R+ +
Sbjct  393  VATPGRLLDFLEKGKIVFSSLKYLVLDEADRMLDMGFLSSIKTVINH-KTMTPTAERITL  451

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV--VPVNPKTDRLWERLGK  461
            +  +   H  ++++L+   ++   +V +    +    V   V  VP   K  +L E   +
Sbjct  452  MFSATFPH--EIQELASAFLNNYLFVVVGTVGAANTDVKQEVLCVPKFEKKAKLVEMCEE  509

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
              I  DD                                      ++ ++F   K   D 
Sbjct  510  ILISADD--------------------------------------EKILVFVEQKRVADF  531

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            +  Y  ++         +F    +HGDR   +R+Q L  F+ G    L+ T V ARG+DI
Sbjct  532  VGTYLCEK---------KFRATTMHGDRYQAQREQALSEFRTGVHNILVATAVTARGLDI  582

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
             G+  V+N  LP +   YVHRIGR GR    GL+IS    E +
Sbjct  583  KGIGVVVNYDLPKDIDEYVHRIGRTGRLGNRGLSISFYDDETD  625


 Score = 50.4 bits (119),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 20/65 (31%), Positives = 39/65 (60%), Gaps = 0/65 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F  M + P + + + +  +  PT +Q  +IP ++ G D++  A+TGSGKT AF +P++ 
Sbjct  262  SFQSMNLRPLLLENIVKAGYGCPTPVQKYTIPNVMNGRDIMACAQTGSGKTAAFLLPMLH  321

Query  63   IVYET  67
             + + 
Sbjct  322  YILDN  326


>sp|A7TS37|RRP3_VANPO ATP-dependent rRNA helicase RRP3 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 
21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=RRP3 PE=3 SV=1
Length=506

 Score = 125 bits (314),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 102/364 (28%), Positives = 159/364 (44%), Gaps = 59/364 (16%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            A I+ P+RELA+Q           +    +R   I+GG+   DQ   L     I++ TPG
Sbjct  157  ACILAPTRELAQQIKETFDSLGSLMG---VRSACIVGGMNMMDQARDLMRKPHIIIATPG  213

Query  349  RL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            RL D L +T   +L +++FLV+DEAD LL   +   ++R+   IP   + G+     + S
Sbjct  214  RLMDHLENTRGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIP---TQGR--TTYLFS  268

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+ S  + KL    +  P    +  +    DT+   ++ V                   
Sbjct  269  ATMTS-KIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLIVV-------------------  308

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                     PG             LK  Y +  + E      I+F RTK + + +     
Sbjct  309  ---------PGG------------LKNTYLIYLMNEFIGKTIIVFTRTKANAERITTL--  345

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
                       +FS   LHGD   ++R  +L+ FK G    L+ TDVAARG+DI  V  V
Sbjct  346  -------ANLLEFSATALHGDLNQNQRTGSLDLFKAGRRSILVATDVAARGLDIPSVDIV  398

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDG  647
            IN  +P + ++Y+HR+GR  RA R G +ISLV+    ++   +    GK      + +D 
Sbjct  399  INYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGKKLPKENVNKDA  458

Query  648  GCTI  651
              T+
Sbjct  459  ILTL  462


 Score = 63.9 bits (154),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 30/70 (43%), Positives = 49/70 (70%), Gaps = 3/70 (4%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +FS++ ++PE+ +A + +++  PT IQA SIP  L G D++  A+TGSGKT AF+IP++ 
Sbjct  87   SFSDLDLVPELIEACKNLNFAKPTPIQARSIPPALQGHDIIGLAQTGSGKTAAFAIPILN  146

Query  63   IVYETLKDQQ  72
             ++    DQQ
Sbjct  147  RLWH---DQQ  153


>sp|Q6GWX0|DDX4_PIG Probable ATP-dependent RNA helicase DDX4 OS=Sus 
scrofa OX=9823 GN=DDX4 PE=2 SV=1
Length=722

 Score = 127 bits (319),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 100/349 (29%), Positives = 166/349 (48%), Gaps = 55/349 (16%)

Query  277  VTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
            +T ++F     P+ +IV P+REL  Q      + +K+     +R ++I GG      +  
Sbjct  353  ITASRFKELQEPECIIVAPTRELVNQIY---LEARKFSFGTCVRAVVIYGGTQLGHSIRQ  409

Query  336  LENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
            +  G +I+  TPGRL D++   K+ L Q+++LVLDEAD +L  G+   + ++ +  P + 
Sbjct  410  IVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLIS-CPGMP  468

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL  455
            S  +R Q ++ SAT    ++++L+ + +                           K++ L
Sbjct  469  SKEQR-QTLMFSATFPE-EIQRLAAEFL---------------------------KSNYL  499

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRT  515
            +  +G+      DV   D  + G      +S+  K+L+    +R I + +    ++F  T
Sbjct  500  FVAVGQVGGACRDVQQAD-LQVG-----QYSKREKLLE---ILRNIGDER---TMVFVET  547

Query  516  KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA  575
            K   D +  +  Q+         + S   +HGDR+  ER+Q L  F+ G    L+ T VA
Sbjct  548  KKKADFIATFLCQE---------KISTTSIHGDREQREREQALGDFRFGKCPVLVATSVA  598

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            ARG+DI  V +VIN  LP     YVHRIGR GR    G AIS    E +
Sbjct  599  ARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESD  647


 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 34/58 (59%), Gaps = 0/58 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            F E  +   +   + +  +   T +Q  SIP+IL G D++  A+TGSGKT AF +P++
Sbjct  288  FEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL  345


>sp|A2QIL2|PRP28_ASPNC Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 
513.88 / FGSC A1513) OX=425011 GN=prp28 PE=3 SV=1
Length=810

 Score = 127 bits (320),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 165/366 (45%), Gaps = 71/366 (19%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P A+++ P+RELA+Q     K+F   +       + I+GG +  +Q   L +G +I++
Sbjct  449  DGPYAIVLAPTRELAQQIEIEAKKFTGPLG---FNVVSIVGGHSLEEQAYSLRDGAEIII  505

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP------------  392
             TPGRL D +    L LSQ  ++++DEAD ++  G+ + +N++ + +P            
Sbjct  506  ATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEKPDSEDAE  565

Query  393  -------QVTSDGKRL-QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
                    +  D  R  Q ++ +AT+ +  V++++ K +  P  V +       DTV   
Sbjct  566  NPLAMSRHINHDQHRYRQTMMYTATMPTA-VERIARKYLRRPAIVTIGSAGEAVDTVEQR  624

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
            V  +  + D+  +RLG       D+                     +  GE+        
Sbjct  625  VEMIAGE-DKRKKRLG-------DI---------------------LSSGEFRA------  649

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
                 I+F   K +CD + +   Q G         FS V LHG +   +R+  L   + G
Sbjct  650  ---PIIVFVNIKRNCDAIAREIKQWG---------FSSVTLHGSKTQDQREAALASVRNG  697

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
                L+ TD+A RGID+  V  V+N  +    ++Y HRIGR GRA + G+AI+ +  E  
Sbjct  698  TTDVLVATDLAGRGIDVPDVSLVVNFNMATSIESYTHRIGRTGRAGKSGVAITFLGNEDA  757

Query  625  KVWYHV  630
             V Y +
Sbjct  758  DVMYDL  763


 Score = 42.0 bits (97),  Expect = 0.021, Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 0/66 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M ++ E  +   + + +  + +  PT IQ  +IP+ +   D++  A TGSGKT AF +P+
Sbjct  371  MRSWDESNLPKRLMELINRVGYKEPTPIQRAAIPIAMQNRDLIGVAVTGSGKTAAFLLPL  430

Query  61   IQIVYE  66
            +  + E
Sbjct  431  LCYIAE  436


>sp|Q9M2E0|RH12_ARATH DEAD-box ATP-dependent RNA helicase 12 OS=Arabidopsis 
thaliana OX=3702 GN=RH12 PE=2 SV=1
Length=498

 Score = 125 bits (314),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 153/346 (44%), Gaps = 60/346 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N  +A+I+ P+RELA QT    K+  KY++   ++ ++  GG + RD +  L   V ++V
Sbjct  191  NVIQAMILVPTRELALQTSQVCKELSKYLN---IQVMVTTGGTSLRDDIMRLHQPVHLLV  247

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GTPGR+ DL   G   L     LV+DEAD LLS  +   +  +   +PQ        Q +
Sbjct  248  GTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQ------NRQFL  301

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT     VK   ++ +  P  ++L  + ++     +           + ER      
Sbjct  302  MFSATF-PVTVKAFKDRHLRKPYVINLMDQLTLMGVTQYYAF--------VEER------  346

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                VH  +          ++S+                 +++Q+IIFC +    + L +
Sbjct  347  --QKVHCLNT---------LFSKL----------------QINQSIIFCNSVNRVELLAK  379

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
               + G         +SC  +H       R +    F+ G  R L+CTD+  RGIDI  V
Sbjct  380  KITELG---------YSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAV  430

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
              VIN   P   ++Y+HR+GR GR   +GLA++LV  E     Y  
Sbjct  431  NVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQT  476


 Score = 52.4 bits (124),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 24/59 (41%), Positives = 38/59 (64%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +  +  ++ + + E  +  P+ IQ ESIP+ L G D+L  A+ G+GKTGAF IPV++
Sbjct  126  FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLE  184


>sp|P54823|DDX6_MOUSE Probable ATP-dependent RNA helicase DDX6 
OS=Mus musculus OX=10090 GN=Ddx6 PE=1 SV=1
Length=483

 Score = 125 bits (313),  Expect = 5e-29, Method: Compositional matrix adjust.
 Identities = 96/333 (29%), Positives = 151/333 (45%), Gaps = 59/333 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +A+++ P+RELA Q      Q  K++   K+  +   GG   RD +  L++ V +V+ TP
Sbjct  166  QAMVIVPTRELALQVSQICIQVSKHMGGAKV--MATTGGTNLRDDIMRLDDTVHVVIATP  223

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ DL+  G   +  V+ +VLDEAD LLSQ   DF+  M + I  +    K  Q+++ S
Sbjct  224  GRILDLIKKGVAKVDHVQMIVLDEADKLLSQ---DFVQIMEDIILTLP---KNRQILLYS  277

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT     V+K     +  P  ++L  E ++     +           + ER         
Sbjct  278  ATF-PLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAY--------VTER--------Q  320

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
             VH  +          ++S                  +++Q+IIFC +    + L +   
Sbjct  321  KVHCLNT---------LFSRL----------------QINQSIIFCNSSQRVELLAKKIS  355

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
            Q G         +SC  +H   +   R +    F+ G  R L+CTD+  RGIDI  V  V
Sbjct  356  QLG---------YSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVV  406

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            IN   P   + Y+HRIGR GR   +GLAI+L+ 
Sbjct  407  INFDFPKLAETYLHRIGRSGRFGHLGLAINLIT  439


 Score = 54.3 bits (129),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 24/59 (41%), Positives = 38/59 (64%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +  +  E+   + EM W  P+ IQ ESIP+ L G D+L  A+ G+GK+GA+ IP+++
Sbjct  98   FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE  156


>sp|Q4HW67|DHH1_GIBZE ATP-dependent RNA helicase DHH1 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=DHH1 PE=3 SV=1
Length=486

 Score = 125 bits (313),  Expect = 5e-29, Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 154/343 (45%), Gaps = 60/343 (17%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + LI+ P+RELA QT    K   K++    +  ++  GG   RD +  L++ V IVVGTP
Sbjct  112  QCLILVPTRELAMQTSQVCKTLGKHLG---INVMVTTGGTGLRDDIIRLQDPVHIVVGTP  168

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ DL      +LS+    ++DEAD LLS  ++  I ++    P      K  QV++ S
Sbjct  169  GRILDLAGKNVADLSECPMFIMDEADKLLSIEFTPVIEQLLQFHP------KDRQVMLFS  222

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT     VK  S+K M  P  ++L  E ++     +             E   K H    
Sbjct  223  ATF-PLSVKDFSDKNMVSPYEINLMDELTLRGITQYYA---------FVEEKQKVHCL--  270

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                  NT        ++S+                 +++Q+IIFC +    + L +   
Sbjct  271  ------NT--------LFSKL----------------QINQSIIFCNSTNRVELLAKKIT  300

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
            + G         +SC   H   + H R +    F+ G  R L+C+D+  RGIDI  V  V
Sbjct  301  ELG---------YSCFYSHAKMQQHARNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVV  351

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
            IN   P   + Y+HRIGR GR   +GLAI+L+  +     Y++
Sbjct  352  INFDFPKNAETYLHRIGRSGRYGHLGLAINLINWDDRFNLYNI  394


 Score = 47.4 bits (111),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (58%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F    +  ++   + E  +  P+ IQ ESIP+ L G D+L  A+ G+GKT AF IP ++
Sbjct  44   FENFALKRDLLMGIFEAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVIPTLE  102


>sp|A5DF03|PRP28_PICGU Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Meyerozyma guilliermondii (strain ATCC 6260 / 
CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 
GN=PRP28 PE=3 SV=2
Length=575

 Score = 126 bits (316),  Expect = 5e-29, Method: Compositional matrix adjust.
 Identities = 99/359 (28%), Positives = 167/359 (47%), Gaps = 49/359 (14%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR  349
            L++ P+RELA Q     K+F   +       + IIGG    + +  +++G  IVV TPGR
Sbjct  236  LVLAPTRELALQISKEAKKFASVLG---YNVVTIIGGHQYEETVKSVQDGAHIVVATPGR  292

Query  350  LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG----------K  399
            L D    G ++LSQ   L +DEAD ++  G+   +  + + +P  +S G          K
Sbjct  293  LIDSAEKGLIDLSQCYHLTMDEADRMIDMGFEKALQSILSFLPSTSSSGFGLDSTIFKVK  352

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
                ++ +AT+ S  ++K+++  +  P ++ +     + D ++             +E L
Sbjct  353  SRITLMFTATI-SPPIEKITKDYLQTPAYLYIGDAGEIVDNINQK-----------FEYL  400

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
            G      D+V +++      N+P   ++ I  L+     + I+E +    IIF   K  C
Sbjct  401  G------DNVDSQEEL----NAPRT-NKMISALR-----QHIRETEQPLIIIFANFKRTC  444

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            + L      Q  G        S + +HG +    R+  +  F++  V  LI TDVAARGI
Sbjct  445  ELLSVELSNQNVG--------SNIVIHGSKSQEARESAIASFREHKVNVLIATDVAARGI  496

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGC  638
            DI  V  V+N  +P     Y+HRIGR GRA + G ++S V     ++  ++ S   KG 
Sbjct  497  DIPNVSLVVNYHMPKRFDEYIHRIGRTGRAGKSGASLSFVDDGDSEILVNLKSFLSKGT  555


 Score = 51.2 bits (121),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 27/73 (37%), Positives = 42/73 (58%), Gaps = 0/73 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + ++ E G+   +   ++++ +  PT IQ  +IP  LG  DV+  AETGSGKT AF IP+
Sbjct  149  LRSWKESGIPTTLLNTIDQLGYKEPTPIQRAAIPTALGHRDVVGIAETGSGKTLAFLIPL  208

Query  61   IQIVYETLKDQQE  73
            +  +    KD  E
Sbjct  209  LSYLSAIDKDYME  221


>sp|Q38F76|IF4A_TRYB2 Probable eukaryotic initiation factor 4A 
OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) OX=185431 
GN=Tb09.160.3270 PE=3 SV=1
Length=404

 Score = 123 bits (309),  Expect = 5e-29, Method: Compositional matrix adjust.
 Identities = 109/377 (29%), Positives = 170/377 (45%), Gaps = 86/377 (23%)

Query  282  FLPNAPKALIVEPSRELAEQTLNNIKQFKKYI-DNPKLRELLIIGGVAARDQLSVLENGV  340
            F  N  + L++ P+RELA QT   I +  +++ +         +GG   +D    L++G 
Sbjct  90   FRHNVLQGLVLSPTRELAMQTAEVITRIGEFLAEGSSSFCATFVGGTRVQDDYRKLQSGT  149

Query  341  DIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR  400
             + VGTPGR+ D+   G +    +R LVLDEAD +LSQG+++ I  +   +P      K 
Sbjct  150  IVAVGTPGRVVDVTKRGAMRTESLRVLVLDEADEMLSQGFAEQIYDIFRFLP------KE  203

Query  401  LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLG  460
            +QV + SAT+   DV +L++K M                                     
Sbjct  204  IQVALFSATMPD-DVLELTKKFM-------------------------------------  225

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD------------Q  508
                       +D TR       +  E IK    ++ +   +EHK+D            Q
Sbjct  226  -----------RDPTRILVKRESLTLEGIK----QFFIAVEEEHKLDTLMDLYETVSIAQ  270

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
            ++IF  T+   D L           +   H  SC  +H +    ER++ +  F+ G  R 
Sbjct  271  SVIFANTRRKVDWLASQL-------NSSNHTVSC--MHSEMSKQEREKVMGTFRNGSSRV  321

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            L+ TD+ ARGID+H V  VIN  LP  K+NY+HRIGR GR  R G+AI+ V  +  +V  
Sbjct  322  LVTTDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFVTQKDVEVLR  381

Query  629  HVCSSRGKGCYNTRLKE  645
             + S      Y+T+++E
Sbjct  382  EIESH-----YHTQIEE  393


 Score = 42.4 bits (98),  Expect = 0.014, Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 37/62 (60%), Gaps = 0/62 (0%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           + +F +M +   + + +    +  P+ IQ  +I     GGD++  A++G+GKTGAFSI +
Sbjct  25  IPSFDDMPLHQNLLRGIYSHGFEKPSSIQQRAIVPFTRGGDIIAQAQSGTGKTGAFSIGL  84

Query  61  IQ  62
           +Q
Sbjct  85  LQ  86


>sp|A7TGW7|DBP10_VANPO ATP-dependent RNA helicase DBP10 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 
21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=DBP10 PE=3 SV=1
Length=977

 Score = 127 bits (320),  Expect = 5e-29, Method: Compositional matrix adjust.
 Identities = 103/356 (29%), Positives = 162/356 (46%), Gaps = 48/356 (13%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +A+I+ PSRELA QT    K+F K      LR +L+ GG +  DQ S++ +  D++V TP
Sbjct  193  RAVILSPSRELALQTHRVFKEFSK---GTHLRSVLLTGGDSLEDQFSMMMSNPDVIVATP  249

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR   L     L+L  V ++V DEAD L   G+ + +N +   +P         Q ++ S
Sbjct  250  GRFLHLKVEMSLDLKTVEYVVFDEADRLFEMGFQEQLNELLAALPM------NRQTLLFS  303

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV-------------------VVPV  448
            ATL S  V   ++  +  P  V L  E  + + +  +                   V+ +
Sbjct  304  ATLPSSLVD-FAKAGLTNPVLVRLDAETKISENLEILFLSTKNEERENNLLYLLQDVIKI  362

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEY---AVRAIKEHK  505
               TD   ++L   +    D  ++D    G  +        K  KG++    V A  E  
Sbjct  363  PLGTDDQIKKLSDFNKSLSDSDSEDEDNKGKQNSR------KSKKGKFQKLKVSASNELP  416

Query  506  MDQA-IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
             +++ I+F  T+   + + Q     G         F    L+G    H RK+ L  F+ G
Sbjct  417  TEKSTIVFAPTRHHVEYITQLLKDSG---------FLVSYLYGTLDQHARKRQLLNFRAG  467

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
                L+ TDVAARG+DI  +  VIN +LP   + ++HR+GR  RA   G A S+V+
Sbjct  468  LTSILVVTDVAARGVDIPMLANVINYSLPASSKIFIHRVGRTARAGNRGWAYSIVS  523


 Score = 49.7 bits (117),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 25/60 (42%), Positives = 35/60 (58%), Gaps = 0/60 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F   G    I   V +  +  PT IQ ++IPLIL   D++  A TGSGKT AF +P+I+
Sbjct  122  SFPSFGFSKLILSNVHKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE  181


>sp|Q4R5S7|DDX4_MACFA Probable ATP-dependent RNA helicase DDX4 
OS=Macaca fascicularis OX=9541 GN=DDX4 PE=2 SV=1
Length=725

 Score = 127 bits (318),  Expect = 5e-29, Method: Compositional matrix adjust.
 Identities = 94/338 (28%), Positives = 156/338 (46%), Gaps = 54/338 (16%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+ +IV P+REL  Q      + +K+     +R ++I GG      +  +  G +I+  T
Sbjct  367  PECIIVAPTRELVNQIY---LEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCAT  423

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL D++   K+ L Q+++LVLDEAD +L  G+   + ++ +  P + S  +R Q ++ 
Sbjct  424  PGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLIS-CPGMPSKEQR-QTLMF  481

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT    ++++L+ + +                           K++ L+  +G+     
Sbjct  482  SATFPE-EIQRLAAEFL---------------------------KSNYLFVAVGQVGGAC  513

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
             DV             +   +  +  K E  V  ++    ++ ++F  TK   D +  + 
Sbjct  514  RDVQ------------QTVLQVGQFSKREKLVEILRNIGDERTMVFVETKKKADFIATFL  561

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
             Q+         + S   +HGDR+  ER+Q L  F+ G    L+ T VAARG+DI  V +
Sbjct  562  CQE---------KISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQH  612

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            VIN  LP     YVHRIGR GR    G AIS    E +
Sbjct  613  VINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESD  650


 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 34/58 (59%), Gaps = 0/58 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            F E  +   +   + +  +   T +Q  SIP+IL G D++  A+TGSGKT AF +P++
Sbjct  291  FEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL  348


>sp|A4QYM6|DRS1_PYRO7 ATP-dependent RNA helicase DRS1 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=DRS1 PE=3 SV=1
Length=790

 Score = 127 bits (319),  Expect = 5e-29, Method: Compositional matrix adjust.
 Identities = 109/388 (28%), Positives = 173/388 (45%), Gaps = 62/388 (16%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + +I+ P+RELA Q      +   + D   ++  L +GG++ + Q S L    D+++ TP
Sbjct  328  RVVILAPTRELAIQCHAVATKLASHTD---IKFCLAVGGLSLKVQESELRLRPDVIIATP  384

Query  348  GR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            GR +D + ++    +  V  LVLDEAD +L  G++D +N +   +P      K  Q ++ 
Sbjct  385  GRFIDHMRNSASFAVDTVEILVLDEADRMLEDGFADELNEILTTLP------KSRQTMLF  438

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT+ S  V  L    ++ P  +       + D+    VV +  +  RL           
Sbjct  439  SATMTS-SVDNLIRVGLNKPVRL-------MVDSQKKTVVTLTQEFVRL-----------  479

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                     RPG     M           Y V   K    ++ IIF R K    +    F
Sbjct  480  ---------RPGREEKRMG----------YLVYLCKNLYTERVIIFFRQKKIAHHARIIF  520

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
               G          SC  LHG     +R Q++E F+ G V FL+ TD+A+RG+DI GV  
Sbjct  521  GLLG---------LSCAELHGSMSQIQRIQSVEAFRDGKVSFLLATDLASRGLDIKGVDT  571

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW-YHVCSSRGKGC-YNTRLK  644
            VIN   P   + YVHR+GR  RA R G AI+L A    KV    V + + +G   ++R+ 
Sbjct  572  VINYEAPQSLEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAAVKAGKAQGAKISSRII  631

Query  645  EDGGCTIWYNEMQLLSEIEEHLNCTISQ  672
            +      W  +   + E+E+ +   + +
Sbjct  632  DAADADSWQAK---IDELEDEVEAVMRE  656


 Score = 51.2 bits (121),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 39/61 (64%), Gaps = 0/61 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            A+F  M +   I + +  + +  PT IQ+++IP+ L G DV+  A TGSGKT AF +P++
Sbjct  255  ASFQSMSLSRPILRGLTSVGFAKPTPIQSKTIPIALMGKDVVGGAVTGSGKTAAFVVPIL  314

Query  62   Q  62
            +
Sbjct  315  E  315


>sp|Q5ZKB9|DDX6_CHICK Probable ATP-dependent RNA helicase DDX6 
OS=Gallus gallus OX=9031 GN=DDX6 PE=2 SV=1
Length=483

 Score = 125 bits (313),  Expect = 5e-29, Method: Compositional matrix adjust.
 Identities = 96/333 (29%), Positives = 151/333 (45%), Gaps = 59/333 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +A+++ P+RELA Q      Q  K++   K+  +   GG   RD +  L++ V +V+ TP
Sbjct  166  QAMVIVPTRELALQVSQICIQVSKHMGGAKV--MATTGGTNLRDDIMRLDDTVHVVIATP  223

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ DL+  G   +  V+ +VLDEAD LLSQ   DF+  M + I  +    K  Q+++ S
Sbjct  224  GRILDLIKKGVAKVEHVQMIVLDEADKLLSQ---DFVQIMEDIILTLP---KNRQILLYS  277

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT     V+K     +  P  ++L  E ++     +           + ER         
Sbjct  278  ATF-PLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAY--------VTER--------Q  320

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
             VH  +          ++S                  +++Q+IIFC +    + L +   
Sbjct  321  KVHCLNT---------LFSRL----------------QINQSIIFCNSSQRVELLAKKIS  355

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
            Q G         +SC  +H   +   R +    F+ G  R L+CTD+  RGIDI  V  V
Sbjct  356  QLG---------YSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVV  406

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            IN   P   + Y+HRIGR GR   +GLAI+L+ 
Sbjct  407  INFDFPKLAETYLHRIGRSGRFGHLGLAINLIT  439


 Score = 54.7 bits (130),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 24/59 (41%), Positives = 38/59 (64%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +  +  E+   + EM W  P+ IQ ESIP+ L G D+L  A+ G+GK+GA+ IP+++
Sbjct  98   FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE  156


>sp|Q2UQI6|DRS1_ASPOR ATP-dependent RNA helicase drs1 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=drs1 
PE=3 SV=2
Length=820

 Score = 127 bits (319),  Expect = 5e-29, Method: Compositional matrix adjust.
 Identities = 106/388 (27%), Positives = 176/388 (45%), Gaps = 62/388 (16%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +  I+ P+RELA Q  N   +   Y D   +    ++GG + R+Q ++L+   D+++ TP
Sbjct  375  RVAILMPTRELAVQCYNVATKLATYTD---ITFCQLVGGFSLREQENILKKRPDVIIATP  431

Query  348  GR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            GR +D + ++    +  +  LVLDEAD +L  G++D +N +   IP      K  Q ++ 
Sbjct  432  GRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIP------KSRQTMLF  485

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT+    V KL    ++ P  + +   DS  +T  +++        + + RL       
Sbjct  486  SATMTD-SVDKLIRVGLNRPVRLMV---DSKKNTSMNLI--------QEFVRL-------  526

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                     RPG     +           Y +   KE    + I+F R K +   +   F
Sbjct  527  ---------RPGREDKRLG----------YLLHLCKEVYTGRVIVFFRQKKEAHRVRIAF  567

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
               G              LHG     +R +++E F++G V FL+ TD+AARG+DI GV  
Sbjct  568  GLLG---------LKAAELHGSMSQEQRIRSVENFREGKVSFLLATDLAARGLDIKGVET  618

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW-YHVCSSRGKGC-YNTRLK  644
            VIN   P   + Y+HR+GR  RA R G A ++ A    KV    V +S+ +G    +R+ 
Sbjct  619  VINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKASKAQGAKVASRVV  678

Query  645  EDGGCTIWYNEMQLLSEIEEHLNCTISQ  672
            +      W    Q   ++EE +N  + +
Sbjct  679  DPAVADRW---AQKAKDLEEEINAVLEE  703


 Score = 48.9 bits (115),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 22/60 (37%), Positives = 39/60 (65%), Gaps = 0/60 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F E  +   I + +  +++  PT IQ ++IP+ L G D++ +A TGSGKT AF +P+++
Sbjct  303  SFQEFNLSRPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILE  362


>sp|Q7S5D9|DHH1_NEUCR ATP-dependent RNA helicase dhh1 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=drh-10 PE=3 SV=3
Length=569

 Score = 125 bits (315),  Expect = 5e-29, Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 153/343 (45%), Gaps = 60/343 (17%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + LI+ P+RELA QT    K   K++    +  ++  GG   RD +  L++ V IVVGTP
Sbjct  115  QCLILVPTRELAMQTSQVCKTLGKHLG---INVMVTTGGTGLRDDIVRLQDPVHIVVGTP  171

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ DL      +LS+    ++DEAD LLSQ ++  I ++    P      K  QV++ S
Sbjct  172  GRILDLAGKQVADLSECPMFIMDEADKLLSQEFTPVIEQLLQFHP------KDRQVMLFS  225

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT     VK  S+K M  P  ++L  E ++     +             E   K H    
Sbjct  226  ATF-PLSVKDFSDKNMTSPYEINLMDELTLRGITQYYA---------FVEEKQKVHCL--  273

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                  NT        ++S+                 +++Q+IIFC +    + L +   
Sbjct  274  ------NT--------LFSKL----------------QINQSIIFCNSTNRVELLAKKIT  303

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
            + G         +SC   H       R +    F+ G  R L+C+D+  RGIDI  V  V
Sbjct  304  ELG---------YSCFYSHAKMAQQARNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVV  354

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
            IN   P   + Y+HRIGR GR   +GLAI+L+  +     Y++
Sbjct  355  INFDFPKNAETYLHRIGRSGRYGHLGLAINLINWDDRFNLYNI  397


 Score = 43.9 bits (102),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 0/37 (0%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            P+ IQ E+IP+ L G D+L  A+ G+GKT AF IP +
Sbjct  68   PSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPAL  104


>sp|Q9NQI0|DDX4_HUMAN Probable ATP-dependent RNA helicase DDX4 
OS=Homo sapiens OX=9606 GN=DDX4 PE=1 SV=2
Length=724

 Score = 127 bits (318),  Expect = 5e-29, Method: Compositional matrix adjust.
 Identities = 96/349 (28%), Positives = 161/349 (46%), Gaps = 55/349 (16%)

Query  277  VTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
            +T ++F     P+ +IV P+REL  Q      + +K+     +R ++I GG      +  
Sbjct  355  ITASRFKELQEPECIIVAPTRELVNQIY---LEARKFSFGTCVRAVVIYGGTQLGHSIRQ  411

Query  336  LENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
            +  G +I+  TPGRL D++   K+ L Q+++LVLDEAD +L  G+   + ++ +  P + 
Sbjct  412  IVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLIS-CPGMP  470

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL  455
            S  +R Q ++ SAT    ++++L+ + +                           K++ L
Sbjct  471  SKEQR-QTLMFSATFPE-EIQRLAAEFL---------------------------KSNYL  501

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRT  515
            +  +G+      DV             +   +  +  K E  V  ++    ++ ++F  T
Sbjct  502  FVAVGQVGGACRDVQ------------QTVLQVGQFSKREKLVEILRNIGDERTMVFVET  549

Query  516  KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA  575
            K   D +  +  Q+         + S   +HGDR+  ER+Q L  F+ G    L+ T VA
Sbjct  550  KKKADFIATFLCQE---------KISTTSIHGDREQREREQALGDFRFGKCPVLVATSVA  600

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            ARG+DI  V +VIN  LP     YVHRIGR GR    G AIS    E +
Sbjct  601  ARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESD  649


 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 21/59 (36%), Positives = 34/59 (58%), Gaps = 0/59 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             F E  +   +   + +  +   T +Q  SIP+IL G D++  A+TGSGKT AF +P++
Sbjct  289  TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL  347


>sp|P26196|DDX6_HUMAN Probable ATP-dependent RNA helicase DDX6 
OS=Homo sapiens OX=9606 GN=DDX6 PE=1 SV=2
Length=483

 Score = 124 bits (312),  Expect = 6e-29, Method: Compositional matrix adjust.
 Identities = 96/333 (29%), Positives = 151/333 (45%), Gaps = 59/333 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +A+++ P+RELA Q      Q  K++   K+  +   GG   RD +  L++ V +V+ TP
Sbjct  166  QAMVIVPTRELALQVSQICIQVSKHMGGAKV--MATTGGTNLRDDIMRLDDTVHVVIATP  223

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ DL+  G   +  V+ +VLDEAD LLSQ   DF+  M + I  +    K  Q+++ S
Sbjct  224  GRILDLIKKGVAKVDHVQMIVLDEADKLLSQ---DFVQIMEDIILTLP---KNRQILLYS  277

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT     V+K     +  P  ++L  E ++     +           + ER         
Sbjct  278  ATF-PLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAY--------VTER--------Q  320

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
             VH  +          ++S                  +++Q+IIFC +    + L +   
Sbjct  321  KVHCLNT---------LFSRL----------------QINQSIIFCNSSQRVELLAKKIS  355

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
            Q G         +SC  +H   +   R +    F+ G  R L+CTD+  RGIDI  V  V
Sbjct  356  QLG---------YSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVV  406

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            IN   P   + Y+HRIGR GR   +GLAI+L+ 
Sbjct  407  INFDFPKLAETYLHRIGRSGRFGHLGLAINLIT  439


 Score = 54.7 bits (130),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 24/59 (41%), Positives = 38/59 (64%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +  +  E+   + EM W  P+ IQ ESIP+ L G D+L  A+ G+GK+GA+ IP+++
Sbjct  98   FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE  156


>sp|Q0UWC8|PRP28_PHANO Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 
/ FGSC 10173) OX=321614 GN=PRP28 PE=3 SV=1
Length=746

 Score = 127 bits (318),  Expect = 6e-29, Method: Compositional matrix adjust.
 Identities = 96/362 (27%), Positives = 166/362 (46%), Gaps = 69/362 (19%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P A+++ P+RELA+Q     ++F   +        +I+GG +  +Q   + +G +IV+
Sbjct  402  DGPYAIVLAPTRELAQQIEVETRKFAAPLG---FNTAVIVGGHSIEEQAFQMRDGAEIVI  458

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD-------  397
             TPGRL D +    L LSQ  ++++DEAD ++  G+ + +N++ + +P VT++       
Sbjct  459  ATPGRLVDCIERRMLVLSQCTYVIMDEADRMIDMGFEEPVNKILDALP-VTNEKPDSDAA  517

Query  398  --------GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN  449
                    G   Q ++ +AT+ +  V++++ K +  P  V +       +TV   V    
Sbjct  518  EDPNAMKRGMYRQTMMYTATMPTA-VERIARKYLRRPAIVTIGNVGEAVETVEQRV----  572

Query  450  PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK-GEYAVRAIKEHKMDQ  508
                         HI+ ++   K                 +IL  GE+            
Sbjct  573  ------------EHIQGEEKRKK--------------RLQEILNSGEFT---------PP  597

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
             I+F   K +CD + +         D K   FS V LHG +   +R+  L + ++  V  
Sbjct  598  IIVFVNIKRNCDAIAR---------DIKNMGFSSVTLHGSKTQEQREAALAQLREHRVDV  648

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            L+ TD+A RGIDI  V  V+N  +    ++Y HRIGR GRA + G+AI+    E   V Y
Sbjct  649  LVATDLAGRGIDITDVSLVVNFNMATSIESYTHRIGRTGRAGKSGVAITFWGNEDADVLY  708

Query  629  HV  630
             +
Sbjct  709  DL  710


 Score = 41.6 bits (96),  Expect = 0.030, Method: Compositional matrix adjust.
 Identities = 20/61 (33%), Positives = 37/61 (61%), Gaps = 0/61 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M  + E G+  ++ + VE + +  P+ +Q  +IP+ L   D++  A TGSGKT +F +P+
Sbjct  326  MRNWQESGLPDKVLRLVEHVGYAEPSAVQRAAIPIALQCRDLIGVAVTGSGKTASFVLPL  385

Query  61   I  61
            +
Sbjct  386  L  386


>sp|Q94BV4|RH6_ARATH DEAD-box ATP-dependent RNA helicase 6 OS=Arabidopsis 
thaliana OX=3702 GN=RH6 PE=2 SV=2
Length=528

 Score = 125 bits (314),  Expect = 6e-29, Method: Compositional matrix adjust.
 Identities = 96/345 (28%), Positives = 153/345 (44%), Gaps = 60/345 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N  +A+I+ P+RELA QT    K+  KY+   K+  ++  GG + RD +  L   V ++V
Sbjct  221  NVIQAVILVPTRELALQTSQVCKELSKYL---KIEVMVTTGGTSLRDDIMRLYQPVHLLV  277

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GTPGR+ DL   G   L     LV+DEAD LLS  +   I  +   +P+        Q++
Sbjct  278  GTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPESR------QIL  331

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT     VK   ++ +  P  ++L  + ++     +           + ER      
Sbjct  332  MFSATF-PVTVKSFKDRYLKKPYIINLMDQLTLMGVTQYYAF--------VEER------  376

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                VH  +          ++S+                 +++Q+IIFC +    + L +
Sbjct  377  --QKVHCLNT---------LFSKL----------------QINQSIIFCNSVNRVELLAK  409

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
               + G         +SC  +H       R +    F+ G  R L+CTD+  RGIDI  V
Sbjct  410  KITELG---------YSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAV  460

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
              VIN   P   ++Y+HR+GR GR   +GLA++LV  E     Y 
Sbjct  461  NVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQ  505


 Score = 50.4 bits (119),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 23/59 (39%), Positives = 37/59 (63%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +  +  ++ + + E  +  P+ IQ ESIP+ L G D+L  A+ G+GKTGAF IP ++
Sbjct  156  FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLE  214


>sp|P38712|RRP3_YEAST ATP-dependent rRNA helicase RRP3 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 
GN=RRP3 PE=1 SV=2
Length=501

 Score = 125 bits (313),  Expect = 6e-29, Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 147/333 (44%), Gaps = 59/333 (18%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            A I+ P+RELA+Q           +    +R   I+GG+   DQ   L     I++ TPG
Sbjct  152  ACILAPTRELAQQIKETFDSLGSLMG---VRSTCIVGGMNMMDQARDLMRKPHIIIATPG  208

Query  349  RL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            RL D L +T   +L +++FLV+DEAD LL   +   ++R+   IP      +     + S
Sbjct  209  RLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPT-----QERTTYLFS  263

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+ S  + KL    +  P    +  +    DT+   ++ V                   
Sbjct  264  ATMTS-KIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVV-------------------  303

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                     PG             LK  Y +  + E      IIF RTK + + L     
Sbjct  304  ---------PGG------------LKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLC-  341

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
                       +FS   LHGD   ++R  +L+ FK G    L+ TDVAARG+DI  V  V
Sbjct  342  --------NLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILVATDVAARGLDIPSVDIV  393

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            +N  +P + ++Y+HR+GR  RA R G +ISLV+
Sbjct  394  VNYDIPVDSKSYIHRVGRTARAGRSGKSISLVS  426


 Score = 63.9 bits (154),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 27/59 (46%), Positives = 45/59 (76%), Gaps = 0/59 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            +FSE+ ++PE+ QA + +++  PT IQ+++IP  L G D++  A+TGSGKT AF+IP++
Sbjct  82   SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPIL  140


>sp|P47943|IF4A_SCHPO ATP-dependent RNA helicase eIF4A OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=tif1 
PE=1 SV=2
Length=392

 Score = 123 bits (308),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 104/358 (29%), Positives = 164/358 (46%), Gaps = 63/358 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+RELA+Q    +      ++   +     IGG   RD ++ L+ GV +VVGTP
Sbjct  89   QALILAPTRELAQQIQKVVVALGDLMN---VECHACIGGTLVRDDMAALQAGVHVVVGTP  145

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    V+  VLDEAD +LS+G+ D I  +   +P         QV++ S
Sbjct  146  GRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTA------QVVLLS  199

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+   DV +++ K M  P  + +K ++   + +    V V                   
Sbjct  200  ATMPQ-DVLEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVEK-----------------  241

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W   +  L   Y    +      QA+IFC T+   D L +   
Sbjct  242  ---------------EEWK--LDTLCDLYETVTVT-----QAVIFCNTRRKVDWLTEQLT  279

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
            ++          F+   +HGD    +R   +  F+ G  R LI TD+ ARGID+  V  V
Sbjct  280  ERD---------FTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLV  330

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            IN  LP  ++NY+HRIGR GR  R G++I+ V  +  ++   +     +  YNT ++E
Sbjct  331  INYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREI-----EQFYNTHIEE  383


 Score = 49.7 bits (117),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 27/70 (39%), Positives = 41/70 (59%), Gaps = 0/70 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +M + PE+ + +    +  P+ IQ  +I  ILG  DVL  A++G+GKT  FSI V+Q
Sbjct  20  TFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQ  79

Query  63  IVYETLKDQQ  72
            +  +LK  Q
Sbjct  80  KIDTSLKQCQ  89


>sp|Q9DF35|DD21A_XENLA Nucleolar RNA helicase 2-A OS=Xenopus laevis 
OX=8355 GN=ddx21-a PE=2 SV=2
Length=759

 Score = 127 bits (318),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 161/337 (48%), Gaps = 59/337 (18%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            AP+ +I+ P+RELA Q  N I+   K     KL+     GG   + Q+  +++G+D +VG
Sbjct  253  APRVIILTPTRELAIQITNEIRSITK-----KLKVSCFYGGTPYQQQVFAIKDGIDFLVG  307

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGR+ DLV   +L+L+ ++ +VLDE D +   G+S+ +  + + +       +  Q ++
Sbjct  308  TPGRVRDLVQNYRLDLTTLKHVVLDEVDMMFDMGFSEQVEEILS-VRYKADPEENPQTLL  366

Query  406  CSATLHSFDVKKLSEKIM--HFPTWVDLKGEDS--VPDTVHHVVVPVNPKTDRLWERLGK  461
             SAT   + +  +++K M   F   +DL G  S     TV H+ +           R  K
Sbjct  367  FSATCPDW-MYNMAKKYMRKQFEK-IDLIGHRSQKAATTVEHLAIECT--------RSQK  416

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
            + +  D                     +++  G +           + IIFC +K     
Sbjct  417  AAVLGD--------------------LVQVYSGSHG----------KTIIFCDSK-----  441

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            LE + +    G  K+    S   LHGD +  ER+  L+ F++G    LI T+VAARG+DI
Sbjct  442  LEAHTLATSCGSLKQ----SAKSLHGDLQQKEREVVLKGFRQGTFEVLIATNVAARGLDI  497

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
              V  V+  + P E   YVHR GR GRA R G+ ISL
Sbjct  498  PEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGVCISL  534


 Score = 39.3 bits (90),  Expect = 0.15, Method: Compositional matrix adjust.
 Identities = 21/59 (36%), Positives = 37/59 (63%), Gaps = 5/59 (8%)

Query  20   MDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGK  78
            + +L P  IQ+++      G DV++ A TG+GKT +F+IP+++ + E   DQQ   +G+
Sbjct  199  VSYLFP--IQSKTFHTAYSGKDVVVQARTGTGKTFSFAIPLVEKLNE---DQQPLARGR  252


>sp|Q5B3H7|DBP8_EMENI ATP-dependent RNA helicase dbp8 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=dbp8 PE=3 SV=1
Length=525

 Score = 125 bits (313),  Expect = 8e-29, Method: Compositional matrix adjust.
 Identities = 107/342 (31%), Positives = 152/342 (44%), Gaps = 64/342 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPK-LRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            A+I+ P+RELA Q    IK     I  P+ ++ +LI GG   R Q   L     +VV TP
Sbjct  166  AVILTPTRELALQIFEQIK----AISAPQSMKPVLITGGTDMRSQAIELAGRPHVVVATP  221

Query  348  GRLDDLVSTGKLN----LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            GRL D ++T   +    L +VR +VLDEAD LLS G    +  +   +  +    +R Q 
Sbjct  222  GRLADHINTSGTDTVAGLKRVRMVVLDEADRLLSPGPGSMLPDVETCLSFLPGPSQR-QT  280

Query  404  IVCSATLHSFDVKKLSE------KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWE  457
            ++ +ATL + +V+ L        K   F T +  + +D+VP T+    V V      L  
Sbjct  281  LLFTATL-TPEVRALKSMPQTPGKPPIFVTEISTEAKDTVPPTLRTTYVQVP-----LTH  334

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
            R    H+                   + S    I K               AI+F  T  
Sbjct  335  REAFLHV-------------------LLSTESNITKS--------------AIVFTNTTK  361

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
              D LE+            GH+ +   LH      ER  NL RF+    R L+ TDVA+R
Sbjct  362  SADLLERLL-------RSLGHRVTS--LHSLLPQSERNSNLARFRASAARVLVATDVASR  412

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            G+DI  V  V+N  +P    +YVHR+GR  RA R G A++LV
Sbjct  413  GLDIPSVSLVVNFEVPRNPDDYVHRVGRTARAGRTGEAVTLV  454


 Score = 48.1 bits (113),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 25/60 (42%), Positives = 35/60 (58%), Gaps = 0/60 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F  + V P +  ++  M    PT IQ   IP IL G D +  + TGSGKT AFS+P++Q
Sbjct  96   SFKALNVAPWLVGSLTTMAVRKPTAIQRACIPEILKGRDCIGGSRTGSGKTIAFSVPILQ  155


>sp|Q9BUQ8|DDX23_HUMAN Probable ATP-dependent RNA helicase DDX23 
OS=Homo sapiens OX=9606 GN=DDX23 PE=1 SV=3
Length=820

 Score = 127 bits (318),  Expect = 8e-29, Method: Compositional matrix adjust.
 Identities = 105/357 (29%), Positives = 158/357 (44%), Gaps = 59/357 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P A+I+ P+RELA+Q      +F K +    +R + +IGG++  DQ   L  G +IV+ T
Sbjct  469  PYAIILAPTRELAQQIEEETIKFGKPLG---IRTVAVIGGISREDQGFRLRMGCEIVIAT  525

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL D++    L LS+  ++VLDEAD ++  G+   + ++   +P         +    
Sbjct  526  PGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDP  585

Query  407  SATLHSFDV--KKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
               L +F+    K  + +M   T         +P  V               ERL +S++
Sbjct  586  EKMLANFESGKHKYRQTVMFTAT---------MPPAV---------------ERLARSYL  621

Query  465  RTDDVHAKDNTRPG------ANSPEMWSEAIKILKGEYAVR----AIKEHKMDQAII-FC  513
            R          RP       A  P    E    L  E   R    AI E   D  II F 
Sbjct  622  R----------RPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFV  671

Query  514  RTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTD  573
              K  CD L +   + G         ++   LHG +   +R+  L   K G    L+ TD
Sbjct  672  NQKKGCDVLAKSLEKMG---------YNACTLHGGKGQEQREFALSNLKAGAKDILVATD  722

Query  574  VAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
            VA RGIDI  V  V+N  +    ++Y+HRIGR GRA + G+AI+ +  E   V+Y +
Sbjct  723  VAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYEL  779


 Score = 49.7 bits (117),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 39/61 (64%), Gaps = 0/61 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + ++ +  + P I + +++  +  PT IQ ++IP+ L   D++  AETGSGKT AF IP+
Sbjct  390  IRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPL  449

Query  61   I  61
            +
Sbjct  450  L  450


>sp|Q10MH8|RH24_ORYSJ DEAD-box ATP-dependent RNA helicase 24 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os03g0308500 PE=2 
SV=1
Length=770

 Score = 126 bits (317),  Expect = 9e-29, Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 152/339 (45%), Gaps = 59/339 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P  ++  P+RELA Q     K+F K  +   LR   + GGV+  DQ   L+ G +IV+ T
Sbjct  293  PIGVVCAPTRELAHQIYLEAKKFAKPYN---LRVAAVYGGVSKFDQFKELKAGCEIVIAT  349

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL DL+    L + +  +LVLDEAD +   G+   I  +  QI          Q ++ 
Sbjct  350  PGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQI------RPDRQTLLF  403

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT+  + V++L+ +I+  P  V +    S  + +  VV  +    +++   L K     
Sbjct  404  SATM-PYKVERLAREILTDPIRVTVGQVGSANEDIKQVVNVLPSDAEKMPWLLEKLPGMI  462

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
            DD                                         ++F   K   D +E   
Sbjct  463  DD--------------------------------------GDVLVFAAKKARVDEIESQL  484

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
             Q+G         F    LHGD+    R + L++FK G    L+ TDVAARG+DI  +  
Sbjct  485  NQRG---------FRIAALHGDKDQASRMETLQKFKSGVYHVLVATDVAARGLDIKSIKT  535

Query  587  VINVTLPDEKQNYVHRIGRVGRA-ERMGLAISLVATEKE  624
            V+N  +  E   ++HRIGR GRA ++ G A +L+ T+KE
Sbjct  536  VVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLI-TQKE  573


 Score = 52.0 bits (123),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 25/76 (33%), Positives = 49/76 (64%), Gaps = 1/76 (1%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP-VI  61
            +F++ G   ++  A+ +  +  PT IQ +++P++L G D++  A+TGSGKT AF +P ++
Sbjct  220  SFADCGFPVQLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIV  279

Query  62   QIVYETLKDQQEGKKG  77
             I+ +   +++EG  G
Sbjct  280  HIMDQPELEKEEGPIG  295


>sp|Q6C7X8|DBP10_YARLI ATP-dependent RNA helicase DBP10 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP10 
PE=3 SV=1
Length=926

 Score = 127 bits (318),  Expect = 9e-29, Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 160/357 (45%), Gaps = 59/357 (17%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +A+I+ PSRELA QTL  +K F    D   LR  +++GG +  +Q  ++ +  DI++ TP
Sbjct  174  RAVILSPSRELALQTLKVVKDFSAGTD---LRLAMLVGGDSLEEQFKMMMSNPDIIIATP  230

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR   L    +L+L+ V ++  DEAD L   G+ + +N +   +P         Q ++ S
Sbjct  231  GRFLHLKVEMELSLASVEYICFDEADRLFELGFGEQMNELLASLPS------NRQTLLFS  284

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV-------------------  448
            ATL    V + ++  +H P  V L  E  +P+ +      V                   
Sbjct  285  ATLPKTLV-EFAKAGLHDPILVRLDAETKLPEHLEMTFFAVKENQRDACLAFILKEVIQM  343

Query  449  ---NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
                P+  +  ERL +  I   D   +D  R     P+   E           R    H+
Sbjct  344  PFATPEQLKELERLDERAI---DDGERDEDR-KQKRPKFKKE-----------RLPPAHQ  388

Query  506  M---DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
            +      I+FC TK   + +    +Q  G        ++   ++G    H RK  L RF+
Sbjct  389  LPSEKSTIVFCPTKHHVEYV-IVLLQTLG--------YAVSYIYGTLDQHARKNQLYRFR  439

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
             G    L+ TDVAARGID+  +  VIN +LP   + ++HR+GR  RA   G A S++
Sbjct  440  TGKTSILVVTDVAARGIDVPVLANVINYSLPPSPKVFIHRVGRTARAGNRGWAYSII  496


 Score = 49.7 bits (117),  Expect = 9e-05, Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 0/60 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F+ +G+   + + +    +  PT IQ ++IPL+L G DV+  A TGSGKT AF +P+++
Sbjct  103  SFAGLGLSQLVLKNIARKGFKQPTPIQRKTIPLVLEGKDVVGMARTGSGKTAAFVLPMLE  162


>sp|Q4I7F9|PRP28_GIBZE Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 
/ FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=PRP28 PE=3 
SV=1
Length=721

 Score = 126 bits (316),  Expect = 9e-29, Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 163/352 (46%), Gaps = 44/352 (13%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P ALI+ P+REL +Q     ++F   +     R + I+GG    +Q   L +G +IVV
Sbjct  363  DGPYALIMAPTRELVQQIETEARKFAGPLG---FRVVSIVGGHQIEEQAYNLRDGAEIVV  419

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D +    L LSQ  ++++DEAD ++  G+ + +N++ + +P VT++       
Sbjct  420  ATPGRLLDCIERRLLVLSQCCYVIMDEADRMIDLGFEESVNKILDALP-VTNEKPDTDEA  478

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
              +  +  +                 L G D    T+ +    + P    L ER+ K ++
Sbjct  479  ENAQIMQRY-----------------LGGRDRYRQTMMYTAT-MPP----LVERIAKKYL  516

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA------IIFCRTKID  518
            R   +    N     ++ E   + ++ + GE   +   +  +         I+F   K +
Sbjct  517  RRPAIVTIGNAGEAVDTVE---QRVEFVSGEDRRKKRLQEILSSGNFGPPIIVFVNIKRN  573

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
            CD + +   Q G         +S V LHG +   +R+  L   + G  + L+ TD+A RG
Sbjct  574  CDAVARDIKQMG---------WSAVTLHGSKTQEQREAALGSVRAGHTQVLVATDLAGRG  624

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
            ID+  V  V+N  +    ++Y HRIGR GRA + G+AI+ +  E  +  Y +
Sbjct  625  IDVPDVSLVVNFNMATNIESYTHRIGRTGRAGKSGVAITFLGPEDHETMYDL  676


 Score = 41.6 bits (96),  Expect = 0.029, Method: Compositional matrix adjust.
 Identities = 20/61 (33%), Positives = 36/61 (59%), Gaps = 0/61 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M ++ E  +   +   V+++ +  P+ IQ  +IP+ L   D++  A TGSGKT AF +P+
Sbjct  287  MRSWQESNLPQRLLNIVDDVGYKDPSPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPL  346

Query  61   I  61
            +
Sbjct  347  L  347


>sp|Q9NR30|DDX21_HUMAN Nucleolar RNA helicase 2 OS=Homo sapiens 
OX=9606 GN=DDX21 PE=1 SV=5
Length=783

 Score = 126 bits (317),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 98/340 (29%), Positives = 157/340 (46%), Gaps = 54/340 (16%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            AP+ L++ P+RELA Q   +     K     KL      GG     Q   + NG+DI+VG
Sbjct  260  APQVLVLAPTRELANQVSKDFSDITK-----KLSVACFYGGTPYGGQFERMRNGIDILVG  314

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGR+ D +  GKL+L++++ +VLDE D +L  G++D +  + +   +  S+    Q ++
Sbjct  315  TPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSE-DNPQTLL  373

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT                P WV    +  +  T   V        D + ++  K+ I 
Sbjct  374  FSATC---------------PHWVFNVAKKYMKSTYEQV--------DLIGKKTQKTAIT  410

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ-  524
             + +  K +          W++   ++     +R    H+  + IIFC TK +   L Q 
Sbjct  411  VEHLAIKCH----------WTQRAAVIGD--VIRVYSGHQ-GRTIIFCETKKEAQELSQN  457

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
              I+Q               LHGD    +R+  L+ F+ G    L+ T+VAARG+DI  V
Sbjct  458  SAIKQ-----------DAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEV  506

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
              VI  + P + ++Y+HR GR GRA R G+ I     ++E
Sbjct  507  DLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEE  546


 Score = 43.1 bits (100),  Expect = 0.011, Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 46/75 (61%), Gaps = 4/75 (5%)

Query  3    AFSEMGVMPEIAQAVEE--MDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            AFS   +  E  + ++   + +L P  IQA++   +  G D++  A TG+GKT +F+IP+
Sbjct  187  AFSNFPISEETIKLLKGRGVTFLFP--IQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPL  244

Query  61   IQIVYETLKDQQEGK  75
            I+ ++  L+D++ G+
Sbjct  245  IEKLHGELQDRKRGR  259


>sp|Q4E162|IF4A_TRYCC Probable eukaryotic initiation factor 4A 
OS=Trypanosoma cruzi (strain CL Brener) OX=353153 GN=Tc00.1047053511585.190 
PE=3 SV=1
Length=404

 Score = 122 bits (307),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 110/378 (29%), Positives = 170/378 (45%), Gaps = 88/378 (23%)

Query  282  FLPNAPKALIVEPSRELAEQTLNNIKQFKKYID--NPKLRELLIIGGVAARDQLSVLENG  339
            F  N  + L++ P+RELA QT   I +  +++   N       + GG   +D    L+ G
Sbjct  90   FRHNVLQGLVLSPTRELALQTAEVITRIGEFLAEGNSSFCATFV-GGTRVQDDYRKLQAG  148

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
              + VGTPGR+ D+   G +    +R LVLDEAD +LSQG+++ I  +   +P      K
Sbjct  149  SIVAVGTPGRVVDVTKRGAMRTEHLRVLVLDEADEMLSQGFAEQIYEIFRYLP------K  202

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
             +QV + SAT+   DV +L++K M                                    
Sbjct  203  EIQVALFSATMPD-DVLELTKKFM------------------------------------  225

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD------------  507
                        +D TR       +  E IK    +Y +   +EHK+D            
Sbjct  226  ------------RDPTRILVKRESLTLEGIK----QYFIAVEEEHKLDTLMDLYETVSIA  269

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
            Q++IF  T+   D L Q         ++  H  SC  +H +    +R++ +  F+ G  R
Sbjct  270  QSVIFANTRRKVDWLAQQL-------NQSNHTVSC--MHSEMPKQDREKVMSTFRNGSSR  320

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             L+ TD+ ARGID+H V  VIN  LP  K++Y+HRIGR GR  R G+AI+ V  +  +V 
Sbjct  321  VLVTTDLVARGIDVHHVNIVINFDLPTNKESYLHRIGRGGRYGRKGVAINFVTQKDVEVL  380

Query  628  YHVCSSRGKGCYNTRLKE  645
              + S      Y+T++ E
Sbjct  381  REIESH-----YHTQIDE  393


 Score = 42.4 bits (98),  Expect = 0.013, Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 37/62 (60%), Gaps = 0/62 (0%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           + +F +M +   + + +    +  P+ IQ  +I     GGD++  A++G+GKTGAFSI +
Sbjct  25  IPSFDDMPLHQNLLRGIYSHGFEKPSSIQQRAIVPFTRGGDIIAQAQSGTGKTGAFSIGL  84

Query  61  IQ  62
           +Q
Sbjct  85  LQ  86


>sp|A5AA68|DBP8_ASPNC ATP-dependent RNA helicase dbp8 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=dbp8 PE=3 SV=1
Length=522

 Score = 124 bits (312),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 104/341 (30%), Positives = 153/341 (45%), Gaps = 64/341 (19%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPK-LRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            L++ P+RELA Q    IK     I  P+ ++ LLI GG   R Q   L     +V+ TPG
Sbjct  164  LVLTPTRELALQIYEQIK----AISAPQSMKPLLITGGTDMRPQAVALAQRPHVVIATPG  219

Query  349  RLDDLVSTGKLN----LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            RL D ++T   +    L +VR +VLDEAD LL+ G+   +  +   +  +    +R Q +
Sbjct  220  RLADHINTSGSDTIRGLKRVRMVVLDEADRLLAPGHGSMLPDVETCLSALPPSSER-QTL  278

Query  405  VCSATLHSFDVKKL------SEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER  458
            + +ATL + +V+ L      S K   F T +  +   S+P T+    + V P T R    
Sbjct  279  LFTATL-TPEVRALKSMPRPSTKPPIFVTEISTENNASIPPTLKQTYLKV-PMTHR----  332

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
                      +H   +T   A+ P                          AIIFC     
Sbjct  333  -------EAFLHVLLSTEANASKP--------------------------AIIFCNHTKT  359

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
             D LE+          +  H+ +   LH      ER  NL RF+    R L+ TDVA+RG
Sbjct  360  ADLLERML-------RRLSHRVTS--LHSLLPQSERNANLARFRASAARLLVATDVASRG  410

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +DI  V  V+N  +P    +YVHR+GR  RA R G +++LV
Sbjct  411  LDIPSVELVVNFDVPRNPDDYVHRVGRTARAGRKGESVTLV  451


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 25/60 (42%), Positives = 36/60 (60%), Gaps = 0/60 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F+ + V P +  ++  M    PT IQ   IP IL G D +  + TGSGKT AFS+P++Q
Sbjct  93   SFASLNVAPWLIGSLTTMAVRKPTAIQKACIPEILNGRDCIGGSRTGSGKTIAFSVPMLQ  152


>sp|Q8RXK6|RH8_ARATH DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis 
thaliana OX=3702 GN=RH8 PE=2 SV=1
Length=505

 Score = 124 bits (311),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 156/346 (45%), Gaps = 60/346 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N  +A+I+ P+RELA QT    K+  K++   K++ ++  GG + +D +  L   V ++V
Sbjct  198  NVIQAVIIVPTRELALQTSQVCKELGKHL---KIQVMVTTGGTSLKDDIMRLYQPVHLLV  254

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GTPGR+ DL   G   L     LV+DEAD LLSQ +   +  + + +P+        Q++
Sbjct  255  GTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESR------QIL  308

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT     VK   ++ +  P  ++L                                 
Sbjct  309  MFSATF-PVTVKDFKDRFLTNPYVINL---------------------------------  334

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
              D++  K  T+  A   E   + I  L   ++     + +++Q+IIFC +    + L +
Sbjct  335  -MDELTLKGITQFYAFVEE--RQKIHCLNTLFS-----KLQINQSIIFCNSVNRVELLAK  386

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
               + G         +SC  +H       R +    F+ G  R L+CTD+  RGIDI  V
Sbjct  387  KITELG---------YSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAV  437

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
              VIN   P   + Y+HR+GR GR   +GLA++L+  E     Y +
Sbjct  438  NVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRI  483


 Score = 50.8 bits (120),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 24/59 (41%), Positives = 36/59 (61%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +  +  E+   + E  +  P+ IQ ESIP+ L G D+L  A+ G+GKT AF IPV++
Sbjct  133  FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLE  191


>sp|Q553B1|DDX46_DICDI ATP-dependent RNA helicase ddx46 OS=Dictyostelium 
discoideum OX=44689 GN=helB1 PE=2 SV=1
Length=1151

 Score = 127 bits (318),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 102/342 (30%), Positives = 152/342 (44%), Gaps = 65/342 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            ALI+ P+RELA Q     K+F K +    LR   + GG +  +Q++ L+ G DIVV TPG
Sbjct  585  ALIMSPTRELALQIHVECKKFSKVLG---LRTACVYGGASISEQIAELKRGADIVVCTPG  641

Query  349  RLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            R+ D++        NL +V FLVLDEAD +   G+   IN +      V S     Q I+
Sbjct  642  RMIDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQINCI------VDSIRPDRQTIM  695

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV--VVPVNPKTDRLWERLGKSH  463
             SAT     V+ +++KI++ P  +   G   V   +     V P   +  RL E L    
Sbjct  696  FSATFPP-KVENVAKKILNKPLEIIAGGRSIVSSDIEQFVEVRPTETRFRRLIELLS---  751

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                +W                  HK  Q +IF   +   DNL 
Sbjct  752  --------------------IWY-----------------HK-GQILIFTNRQETTDNLY  773

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
            +              Q+ C+ LHG +   +R + +  FK      LI T +A+RG+DI  
Sbjct  774  RQL---------SNSQYQCLSLHGSKDQTDRDETISDFKNKVKTILIATPLASRGLDIKD  824

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  V+N   PD  ++YVHR+GR GRA   G A + +  ++E+
Sbjct  825  LNLVVNFDCPDHLEDYVHRVGRTGRAGNRGTAYTFITPDEER  866


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 21/62 (34%), Positives = 41/62 (66%), Gaps = 0/62 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + ++++ G+  ++   +++  +  PT IQA++IP I+ G D++  A TGSGKT AF +P+
Sbjct  508  IQSWAQAGLTEKVHLLLKKFQYEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPM  567

Query  61   IQ  62
             +
Sbjct  568  FR  569


>sp|Q0U7S9|DHH1_PHANO ATP-dependent RNA helicase DHH1 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=DHH1 PE=3 SV=1
Length=522

 Score = 124 bits (312),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 105/380 (28%), Positives = 165/380 (43%), Gaps = 75/380 (20%)

Query  258  LSKAPDG------YIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKK  311
            L++A +G      +++ +    N ++++T+       ALI+ P+RELA QT    K   K
Sbjct  90   LARAKNGTGKTAAFVIPTLERVNPKISKTQ-------ALILVPTRELALQTSQVCKTLGK  142

Query  312  YIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDE  371
            ++    +  ++  GG   +D +  L + V I+VGTPGR+ DL   G  +LS  +  V+DE
Sbjct  143  HLG---INVMVSTGGTGLKDDIIRLSDPVHIIVGTPGRILDLAGKGVADLSTCQTFVMDE  199

Query  372  ADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL  431
            AD LLS  ++  + ++    P      K  QV++ SAT     VK   +K M+ P  ++L
Sbjct  200  ADKLLSPEFTPVVEQLLGFHP------KDRQVMLFSATF-PIVVKTFKDKHMNSPYEINL  252

Query  432  KGEDSVPD-TVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIK  490
              E ++   T ++  V    K   L     K  I                          
Sbjct  253  MDELTLRGITQYYAFVEEKQKVHCLNTLFNKLQI--------------------------  286

Query  491  ILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRK  550
                            +Q+IIFC +    + L +   + G         +SC   H    
Sbjct  287  ----------------NQSIIFCNSTNRVELLAKKITELG---------YSCFYSHARML  321

Query  551  PHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAE  610
             H R +    F+ G  R L+C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR  
Sbjct  322  QHNRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFG  381

Query  611  RMGLAISLVATEKEKVWYHV  630
             +GLAI+L+  E     Y +
Sbjct  382  HLGLAINLINWEDRFNLYRI  401


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 24/69 (35%), Positives = 38/69 (55%), Gaps = 0/69 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +  +  E+   + E  +  P+ IQ E+IP+ L G D+L  A+ G+GKT AF IP ++ 
Sbjct  51   FEDFFIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER  110

Query  64   VYETLKDQQ  72
            V   +   Q
Sbjct  111  VNPKISKTQ  119


>sp|Q2H0R2|DBP10_CHAGB ATP-dependent RNA helicase DBP10 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / 
NBRC 6347 / NRRL 1970) OX=306901 GN=DBP10 PE=3 SV=1
Length=762

 Score = 126 bits (316),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 157/334 (47%), Gaps = 27/334 (8%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +A+I+ PSRELA QTL  +K+  K  D   L+ +L++GG +  +Q  ++    DI++ TP
Sbjct  158  RAIIMSPSRELALQTLKVVKELGKGTD---LKTVLLVGGDSLEEQFGLMAANPDIIIATP  214

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR   L     LNLS VR++V DEAD L   G++  +  + + +P         Q ++ S
Sbjct  215  GRFLHLKVEMSLNLSSVRYVVFDEADRLFEMGFAAQLTEILHALPPSR------QTLLFS  268

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS-HIRT  466
            ATL S  V+  +   +  P+ + L  E  V   +      V     +  E+ G   HI  
Sbjct  269  ATLPSSLVE-FARAGLQEPSLIRLDAETKVSPDLESAFFSV-----KGGEKEGALLHILH  322

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA-IIFCRTKIDCDNLEQY  525
            D +       P     E   +  +  K +   R  KE   + + IIF  TK   + +   
Sbjct  323  DVIKMPLGV-PEGIEEETDEQQARKRKRDSERRNRKEKPTEHSTIIFTATKHHVEYIAHL  381

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
                G         FS   ++G      RK  ++ F++G    L+ TDVAARGIDI  + 
Sbjct  382  LRHAG---------FSVSYIYGSLDQTARKIQVDNFRRGRTNILVVTDVAARGIDIPVLA  432

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
             VIN   P + + +VHR+GR  RA + G A +L+
Sbjct  433  NVINYDFPPQPKIFVHRVGRTARAGQRGWAYALL  466


 Score = 55.5 bits (132),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  MG+   + +A+    + +PT IQ ++IPL+L   DV+  A TGSGKT AF IP+I+
Sbjct  88   FQAMGLNSNLLRAISRKGFSVPTPIQRKTIPLVLERRDVVGMARTGSGKTAAFVIPMIE  146


>sp|Q6BLU9|PRP28_DEBHA Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 
767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 
GN=PRP28 PE=3 SV=2
Length=580

 Score = 125 bits (313),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 99/345 (29%), Positives = 158/345 (46%), Gaps = 49/345 (14%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P  LI+ P+RELA Q     K+ K + D   L  + IIGG    + +  + NGV IVV
Sbjct  236  NKPLGLILAPTRELALQI---TKEAKLFGDKLNLNVVTIIGGHQYEETVHSVRNGVHIVV  292

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP-----QVTSDGK  399
             TPGRL D +  G +NLS   F  +DEAD ++  G+   +  + N +P     + T DGK
Sbjct  293  ATPGRLIDSLERGIINLSNCYFFTMDEADKMIDMGFEKSLQSILNYLPASEKLETTIDGK  352

Query  400  RLQV-----IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDR  454
               +     ++ +AT+ S  ++K+++  +  P ++ +         V   V  +N + + 
Sbjct  353  IFNIKKRITLMFTATI-SPPIEKITKNYLMKPGYLFIGN-------VGEAVDNINQQFEY  404

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
               R     I                 P+   +   IL+         E++    IIF  
Sbjct  405  FGARQSSDEIL---------------DPKKLDKLFSILRFHK-----DENRNYSIIIFAN  444

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
             K  C+ L  Y + + G  D          +HG +    R++ ++ F++G  + LI TDV
Sbjct  445  FKKACEEL-AYELSRKGFSDN-------TVIHGSKSQEARERAIDSFREGKDKILIATDV  496

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            AARGIDI  V  V+N  +  +   Y+HRIGR GRA   G + + +
Sbjct  497  AARGIDIPNVSLVVNYQMTKKFDEYIHRIGRTGRAGNKGTSCTFI  541


 Score = 47.0 bits (110),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIV------YETLKDQQEGKKGK  78
            PT IQ  SIPL L G D++  AETGSGKT AF +P+   +      Y   + QQE    K
Sbjct  178  PTPIQRASIPLALNGRDIVGIAETGSGKTLAFLLPLFSYILSVDSNYLLYEHQQESNFNK  237


>sp|Q8NJM2|DBP10_ASPFU ATP-dependent RNA helicase dbp10 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC 
A1100 / Af293) OX=330879 GN=dbp10 PE=3 SV=1
Length=869

 Score = 126 bits (317),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 160/353 (45%), Gaps = 57/353 (16%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + L++ PSRELA QTL  +K+  +  D   L+ +L++GG +  +Q +++    DI++ TP
Sbjct  142  RGLVLSPSRELALQTLKVVKELGRGTD---LKSVLLVGGDSLEEQFAMIAGNPDIIIATP  198

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR   L     L+LS +R++V DEAD L   G++  +  + + +P         Q ++ S
Sbjct  199  GRFLHLKVEMNLDLSSIRYVVFDEADRLFEMGFAAQLTEILHGLPA------NRQTLLFS  252

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSV-PD-------------------TVHHVV-V  446
            ATL    V+  +   +  PT V L  E  + PD                    +H V+ +
Sbjct  253  ATLPKSLVE-FARAGLQEPTLVRLDTESKISPDLQNAFFSVKSSEKEGALLYILHEVIKM  311

Query  447  PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM  506
            P  P T+   +R      + +D  AK+         EM          E AV   +    
Sbjct  312  PTGP-TEVSQQR------KEEDASAKNLKNKKRKRAEM----------EKAVNTRESPTK  354

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
               I+F  TK   D L     + G         F+   ++G      RK  ++ F+ G  
Sbjct  355  HSTIVFAATKHHVDYLYSLLCEAG---------FAVSYVYGSLDQTARKIQVQNFRTGMT  405

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
              L+ TDVAARGIDI  +  VIN   P + + +VHR+GR  RA R G + SLV
Sbjct  406  NILVVTDVAARGIDIPILANVINYDFPSQPKIFVHRVGRTARAGRKGWSYSLV  458


 Score = 54.3 bits (129),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  MG+   + +A+    + +PT IQ ++IP+I+   DV+  A TGSGKT AF IP+I+
Sbjct  72   FQAMGLSANLLKAIARKGFSVPTPIQRKTIPVIMDDQDVVGMARTGSGKTAAFVIPMIE  130


>sp|Q39189|RH7_ARATH DEAD-box ATP-dependent RNA helicase 7 OS=Arabidopsis 
thaliana OX=3702 GN=RH7 PE=1 SV=2
Length=671

 Score = 125 bits (314),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 102/364 (28%), Positives = 164/364 (45%), Gaps = 63/364 (17%)

Query  266  IVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
            I++S  +G A+  +      +P  L++ P+RELA+Q   +   F  Y  +  L    + G
Sbjct  154  ILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAAD---FDAYGGSLGLSSCCLYG  210

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            G +   Q   L+ GVDIVVGTPGR+ D +    L+ S ++F VLDEAD +L  G+ + + 
Sbjct  211  GDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVEDVE  270

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF-PTWVDLKGEDSV--PDTVH  442
             +  ++     D  ++Q ++ SATL S+ VK +S + +      +DL G D +   ++V 
Sbjct  271  LILGKV----EDSTKVQTLLFSATLPSW-VKNISNRFLKRDQKTIDLVGNDKMKASNSVR  325

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
            H+ +P N        +   + +  D +    +                            
Sbjct  326  HIAIPCN--------KAAMARLIPDIISCYSSG---------------------------  350

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
                 Q IIF  TK+    L              G       LHG+    +R+  L  F+
Sbjct  351  ----GQTIIFAETKVQVSEL-------------SGLLDGSRALHGEIPQSQREVTLAGFR  393

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             G    L+ T+VAARG+DI+ V  +I    P E + Y+HR GR GRA   G+A++L  + 
Sbjct  394  NGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAVTLYDSR  453

Query  623  KEKV  626
            K  V
Sbjct  454  KSSV  457


 Score = 36.6 bits (83),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 17/43 (40%), Positives = 28/43 (65%), Gaps = 2/43 (5%)

Query  20   MDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            ++ L P  IQA +  ++L G D++  A TG GKT AF +P+++
Sbjct  116  IEALFP--IQASTFDMVLDGADLVGRARTGQGKTLAFVLPILE  156


>sp|Q5U526|I4A3A_XENLA Eukaryotic initiation factor 4A-III-A OS=Xenopus 
laevis OX=8355 GN=eif4a3-a PE=2 SV=1
Length=415

 Score = 122 bits (306),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 101/358 (28%), Positives = 164/358 (46%), Gaps = 63/358 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+RELA Q    +     Y++   ++    IGG    + +  L+ G  +V GTP
Sbjct  112  QALILAPTRELAGQIQKVLLALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHVVAGTP  168

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++ LVLDEAD +L++G+ + I  ++  +P  T      QV + S
Sbjct  169  GRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT------QVCLIS  222

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL   ++ +++ K M  P  + +K ++   + +    V V        ER         
Sbjct  223  ATL-PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV--------ER---------  264

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W      L   Y    I      QA+IFC TK   D L +   
Sbjct  265  ---------------EEWK--FDTLCDLYDTLTIT-----QAVIFCNTKRKVDWLTEKM-  301

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
                    +   F+   +HGD    ER+  ++ F+ G  R LI TDV ARG+D+  V  +
Sbjct  302  --------REANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLI  353

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            IN  LP+ ++ Y+HRIGR GR    G+AI+ V  +  ++   +     +  Y+T++ E
Sbjct  354  INYDLPNNRELYIHRIGRSGRYGGKGVAINFVKNDDIRILRDI-----EQYYSTQIDE  406


 Score = 40.8 bits (94),  Expect = 0.040, Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 39/70 (56%), Gaps = 0/70 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F  MG+  ++ + +    +  P+ IQ  +I  I+ G DV+  +++G+GKT  F + V+Q
Sbjct  43   TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQ  102

Query  63   IVYETLKDQQ  72
             +   +++ Q
Sbjct  103  CLDIQVRETQ  112


>sp|Q0IHV9|DDX6_XENTR Probable ATP-dependent RNA helicase ddx6 
OS=Xenopus tropicalis OX=8364 GN=ddx6 PE=2 SV=1
Length=481

 Score = 123 bits (309),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 95/333 (29%), Positives = 151/333 (45%), Gaps = 59/333 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +A+++ P+RELA Q      Q  K++   K+  +   GG   RD +  L++ V +V+ TP
Sbjct  165  QAMVIVPTRELALQVSQICIQVSKHMGGVKV--MATTGGTNLRDDIMRLDDTVHVVIATP  222

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ DL+  G   +  ++ +VLDEAD LLSQ   DF+  M + I  +    K  Q+++ S
Sbjct  223  GRILDLIKKGVAKVDHIQMIVLDEADKLLSQ---DFVQIMEDIIITLP---KNRQILLYS  276

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT     V+K     +  P  ++L  E ++     +           + ER         
Sbjct  277  ATF-PLSVQKFMTSHLQKPYEINLMEELTLKGVTQYYAY--------VTER--------Q  319

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
             VH  +          ++S                  +++Q+IIFC +    + L +   
Sbjct  320  KVHCLNT---------LFSRL----------------QINQSIIFCNSSQRVELLAKKIS  354

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
            Q G         +SC  +H   +   R +    F+ G  R L+CTD+  RGIDI  V  V
Sbjct  355  QLG---------YSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVV  405

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            IN   P   + Y+HRIGR GR   +GLAI+L+ 
Sbjct  406  INFDFPKLAETYLHRIGRSGRFGHLGLAINLIT  438


 Score = 54.3 bits (129),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 24/59 (41%), Positives = 38/59 (64%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +  +  E+   + EM W  P+ IQ ESIP+ L G D+L  A+ G+GK+GA+ IP+++
Sbjct  97   FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE  155


>sp|Q2UHC1|DBP10_ASPOR ATP-dependent RNA helicase dbp10 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp10 
PE=3 SV=1
Length=929

 Score = 126 bits (316),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 99/335 (30%), Positives = 154/335 (46%), Gaps = 22/335 (7%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + LI+ PSRELA QTL  +K+  K  D   L+ +L++GG +  +Q S++    DIV+ TP
Sbjct  161  RGLILSPSRELALQTLKVVKELGKGTD---LKSVLLVGGDSLEEQFSLMAGNPDIVIATP  217

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR   L     L+LS +R++V DEAD L   G++D +  +   +P         Q ++ S
Sbjct  218  GRFLHLKVEMNLDLSSIRYVVFDEADRLFEMGFADQLTEILYGLP------ANRQTLLFS  271

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV--NPKTDRLWERLGKS-HI  464
            ATL    V + +   +  PT + L  E  +   + +V   V  + K   L   L +   +
Sbjct  272  ATLPKSLV-EFARAGLQEPTLIRLDTESKISPDLENVFFSVKSSEKEGALLHILHEVIKM  330

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
             T    A    +   +     +   +    + A+   +       I+F  TK   D L  
Sbjct  331  PTGPTEAAQRQKEQGDGKNFKNFKKRKRGDDKAINFQESPTKYSTIVFAATKHHVDYLYS  390

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
               + G         F+    +G      RK  ++ F+ G    L+ TDVAARGIDI  +
Sbjct  391  LLREAG---------FAVSYAYGSLDQTARKIQVQNFRAGLSNILVVTDVAARGIDIPIL  441

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
              VIN   P + + +VHR+GR  RA R G + SLV
Sbjct  442  ANVINYDFPSQPKIFVHRVGRTARAGRKGWSYSLV  476


 Score = 56.2 bits (134),  Expect = 9e-07, Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  MG+   + +A+    + +PT IQ ++IP+I+ G DV+  A TGSGKT AF IP+I+
Sbjct  91   FQAMGLNAHLLKAITRKGFSVPTPIQRKTIPVIMDGQDVVGMARTGSGKTAAFVIPMIE  149


>sp|A6ZSX1|RRP3_YEAS7 ATP-dependent rRNA helicase RRP3 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=RRP3 PE=3 
SV=1
Length=501

 Score = 124 bits (310),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 146/333 (44%), Gaps = 59/333 (18%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            A I+ P+RELA+Q           +    +R   I+GG+   DQ   L     I++ TPG
Sbjct  152  ACILAPTRELAQQIKETFDSLGSLMG---VRSTCIVGGMNMMDQARDLMRKPHIIIATPG  208

Query  349  RL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            RL D L +T   +L +++FLV+DEAD LL   +   ++R+   IP      +     + S
Sbjct  209  RLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPT-----QERTTYLFS  263

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+ S  + KL    +  P    +  +    DT+   ++ V                   
Sbjct  264  ATMTS-KIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVV-------------------  303

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                     PG             LK  Y +  + E      IIF RTK + + L     
Sbjct  304  ---------PGG------------LKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLC-  341

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
                       +FS   LHGD   ++R   L+ FK G    L+ TDVAARG+DI  V  V
Sbjct  342  --------NLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDVAARGLDIPSVDIV  393

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            +N  +P + ++Y+HR+GR  RA R G +ISLV+
Sbjct  394  VNYDIPVDSKSYIHRVGRTARAGRSGKSISLVS  426


 Score = 63.9 bits (154),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 27/59 (46%), Positives = 45/59 (76%), Gaps = 0/59 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            +FSE+ ++PE+ QA + +++  PT IQ+++IP  L G D++  A+TGSGKT AF+IP++
Sbjct  82   SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPIL  140


>sp|Q5BFU7|DBP10_EMENI ATP-dependent RNA helicase dbp10 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / 
NRRL 194 / M139) OX=227321 GN=dbp10 PE=3 SV=1
Length=936

 Score = 126 bits (316),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 104/348 (30%), Positives = 161/348 (46%), Gaps = 36/348 (10%)

Query  280  TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
            TKF     + LI+ PSRELA QTL  +K+  K  D   L+ +L++GG +  +Q  ++   
Sbjct  158  TKF---GARGLILSPSRELALQTLKVVKELGKGTD---LKSVLLVGGDSLEEQFGMMAGN  211

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
             DIV+ TPGR   L     L+LS ++++V DEAD L   G++  +  + + +P       
Sbjct  212  PDIVIATPGRFLHLKVEMNLDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPSTR----  267

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              Q ++ SATL    V+  +   +  PT V L  E  +   + +    V     +  E+ 
Sbjct  268  --QTLLFSATLPKSLVE-FARAGLQDPTLVRLDTESKISPDLQNAFFSV-----KSAEKE  319

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD--------QAII  511
            G      ++V  K  T P   S  +  +  +  K +   RA  E  ++          I+
Sbjct  320  GALLYILNEV-IKMPTGPTEASLRLKEKGPEDSKNKKRKRAEMERAVNMKESPTKHSTIV  378

Query  512  FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLIC  571
            F  TK   D L     + G         F+   ++G      RK  ++ F+ G    L+ 
Sbjct  379  FAATKHHVDYLYSLLREAG---------FAVSYVYGSLDQTARKIQVQNFRTGISNILVV  429

Query  572  TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            TDVAARGIDI  +  VIN   P + + +VHR+GR  RA R G + SLV
Sbjct  430  TDVAARGIDIPILANVINYDFPSQPKIFVHRVGRTARAGRKGWSYSLV  477


 Score = 53.1 bits (126),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  MG+   + +A+    + +PT IQ ++IP+I+   DV+  A TGSGKT AF IP+I+
Sbjct  93   FQAMGLNANLLKAIARKGFSVPTPIQRKTIPVIMEDQDVVGMARTGSGKTAAFVIPMIE  151


>sp|P44922|RHLB_HAEIN ATP-dependent RNA helicase RhlB OS=Haemophilus 
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) 
OX=71421 GN=rhlB PE=3 SV=2
Length=415

 Score = 122 bits (306),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 104/336 (31%), Positives = 164/336 (49%), Gaps = 57/336 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+ALI+ P+RELA Q  N+ +   K      L+  L  GG     QL  +E GVDI++GT
Sbjct  84   PRALILAPTRELAVQISNDAEFLAK---ASGLKTALAYGGDGYDKQLQAIERGVDILIGT  140

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
             GR+ D V  G + L +++ +VLDEAD +   G   FI  +   + +  +   RL ++  
Sbjct  141  TGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLG---FIRDIRYLLRKCPAPQARLTMLF-  196

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SATL S+ V++L+ + M+ P +++++ E     T H +                      
Sbjct  197  SATL-SYKVRELAFEDMNEPEYIEIEPEQK---TGHRI----------------------  230

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                 K+     +N  +M +  + +++ E+  R I         +F  TK  C+ +  Y 
Sbjct  231  -----KEELFYPSNQDKM-ALLLTLMEDEWPERCI---------VFANTKHRCEEIWGYL  275

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                      GH+     L GD    +R   L++F  GD+  L+ TDVAARG+ I  V +
Sbjct  276  A-------ADGHRVG--LLTGDVAQKKRLSLLKQFTDGDLDILVATDVAARGLHISDVTH  326

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V N  LPD++++YVHRIGR GRA   G++IS    E
Sbjct  327  VFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEE  362


 Score = 39.7 bits (91),  Expect = 0.094, Method: Compositional matrix adjust.
 Identities = 22/53 (42%), Positives = 32/53 (60%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           FS + + P +  A+ +  +   T IQA S+P+ L G DV   A+TG+GKT AF
Sbjct  11  FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAF  63


>sp|P21507|SRMB_ECOLI ATP-dependent RNA helicase SrmB OS=Escherichia 
coli (strain K12) OX=83333 GN=srmB PE=1 SV=1
Length=444

 Score = 122 bits (307),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 96/333 (29%), Positives = 147/333 (44%), Gaps = 57/333 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+ LI+ P+RELA Q  ++ ++  K+     L    I GGVA  +   V     DIVV T
Sbjct  77   PRILILTPTRELAMQVSDHARELAKHT---HLDIATITGGVAYMNHAEVFSENQDIVVAT  133

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
             GRL   +     +   V  L+LDEAD +L  G++  I  +  +         R Q ++ 
Sbjct  134  TGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW------RKQTLLF  187

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SATL    ++  +E+++  P                 V V  NP T R  +++ + + R 
Sbjct  188  SATLEGDAIQDFAERLLEDP-----------------VEVSANPST-RERKKIHQWYYRA  229

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
            DD+  K                         V  +K+ +  ++I+F R +     L  + 
Sbjct  230  DDLEHKT---------------------ALLVHLLKQPEATRSIVFVRKRERVHELANWL  268

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
             + G          +   L G+    +R + ++R  +G V  L+ TDVAARGIDI  V +
Sbjct  269  REAG---------INNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSH  319

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            V N  +P     Y+HRIGR  RA R G AISLV
Sbjct  320  VFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV  352


 Score = 34.7 bits (78),  Expect = 3.7, Method: Compositional matrix adjust.
 Identities = 22/47 (47%), Positives = 32/47 (68%), Gaps = 0/47 (0%)

Query  16  AVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           A+++  +  PT IQA +IP  L G DVL +A TG+GKT A+ +P +Q
Sbjct  18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ  64


>sp|Q61496|DDX4_MOUSE ATP-dependent RNA helicase DDX4 OS=Mus musculus 
OX=10090 GN=Ddx4 PE=1 SV=2
Length=702

 Score = 125 bits (314),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 97/349 (28%), Positives = 160/349 (46%), Gaps = 55/349 (16%)

Query  277  VTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
            +T ++F     P+ +IV P+REL  Q      + +K+     +R ++I GG      +  
Sbjct  328  ITASRFKELQEPECIIVAPTRELINQIY---LEARKFSFGTCVRAVVIYGGTQFGHSVRQ  384

Query  336  LENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
            +  G +I+  TPGRL D++   K+ L QV++LVLDEAD +L  G+   + ++ +  P + 
Sbjct  385  IVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLIS-CPGMP  443

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL  455
            S  +R Q ++ SAT    ++++L+   +                           K+  L
Sbjct  444  SKEQR-QTLLFSATFPE-EIQRLAGDFL---------------------------KSSYL  474

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRT  515
            +  +G+      DV             +   +  +  K E  V  ++    ++ ++F  T
Sbjct  475  FVAVGQVGGACRDVQ------------QTILQVGQYSKREKLVEILRNIGDERTMVFVET  522

Query  516  KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA  575
            K   D +  +  Q+         + S   +HGDR+  ER+Q L  F+ G    L+ T VA
Sbjct  523  KKKADFIATFLCQE---------KISTTSIHGDREQREREQALGDFRCGKCPVLVATSVA  573

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            ARG+DI  V +VIN  LP     YVHRIGR GR    G AIS   T+ +
Sbjct  574  ARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDTDSD  622


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 20/61 (33%), Positives = 35/61 (57%), Gaps = 0/61 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E  +   +   + +  +   T +Q  SIP++L G D++  A+TGSGKT AF +P+
Sbjct  260  ILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPI  319

Query  61   I  61
            +
Sbjct  320  L  320


>sp|Q4P331|IF4A_USTMA ATP-dependent RNA helicase eIF4A OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=TIF1 PE=3 
SV=1
Length=411

 Score = 122 bits (306),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 103/360 (29%), Positives = 167/360 (46%), Gaps = 63/360 (18%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            A +ALI+ P+RELA+Q    +     Y+   K+     IGG   R+ ++ L  G  +VVG
Sbjct  106  AVQALILAPTRELAQQIQKVVIALGDYM---KIDCHACIGGTNVREDMAKLNEGAQVVVG  162

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGR+ D+++       Q++   LDEAD +LS+G+ D +  +   +PQ T      Q ++
Sbjct  163  TPGRVYDMINRRAFKTDQLKMFCLDEADEMLSRGFKDQMYEVFQLLPQDT------QCVL  216

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT+   +V ++++K M  P  + +K ++   + +    V V                 
Sbjct  217  LSATMPQ-EVLEVTKKFMRDPIRILVKRDELTLEGIKQFYVAV-----------------  258

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                             E W   +  L   Y    I      QA+IFC T+   D L   
Sbjct  259  ---------------EKEDWK--LDTLCDLYETVTIT-----QAVIFCNTRRKVDWLTDK  296

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
                         +F+   +HGD +  +R+  +  F+ G  R LI TD+ ARGID+  V 
Sbjct  297  L---------TSREFTVSAMHGDMEQAQREVIMREFRSGSSRVLITTDLLARGIDVQQVS  347

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
             VIN  LP  ++NY+HRIGR GR  R G+AI+ V ++  ++   +     +  Y+T++ E
Sbjct  348  LVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTSDDVRMLRDI-----EQFYSTQIDE  402


 Score = 43.9 bits (102),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 40/69 (58%), Gaps = 0/69 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F  M +  E+ + V    +  P+ IQA +I  ++ G DV+  A++G+GKT  FSI ++Q 
Sbjct  40   FDNMELKEELLRGVYAYGFERPSAIQARAIVPVIKGHDVIAQAQSGTGKTATFSIAILQR  99

Query  64   VYETLKDQQ  72
            +  ++K  Q
Sbjct  100  IDPSIKAVQ  108


>sp|Q5W5U4|DDX4_BOVIN Probable ATP-dependent RNA helicase DDX4 
OS=Bos taurus OX=9913 GN=DDX4 PE=2 SV=1
Length=729

 Score = 125 bits (314),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 97/349 (28%), Positives = 161/349 (46%), Gaps = 55/349 (16%)

Query  277  VTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
            +T ++F     P+ +IV P+REL  Q      + +K+     +R ++I GG      +  
Sbjct  357  ITASRFKELQEPECIIVAPTRELINQIY---LEARKFSFGTCVRAVVIYGGTQLGHSIRQ  413

Query  336  LENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
            +  G +I+  TPGRL D++   K+ L QV++LVLDEAD +L  G+   + ++ +  P + 
Sbjct  414  IVQGCNILCATPGRLMDVIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLIS-CPGMP  472

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL  455
            S  +R Q ++ SAT    ++++L+ + +                           K++ L
Sbjct  473  SKEQR-QTLMFSATFPE-EIQRLAGEFL---------------------------KSNYL  503

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRT  515
            +  +G+      DV             +   +  +  K E  V  ++    ++ ++F  T
Sbjct  504  FVAVGQVGGACRDVQ------------QTILQVGQYSKREKLVEILRNIGDERTMVFVET  551

Query  516  KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA  575
            K   D +  +  Q+         + S   +HGDR+  ER+Q L  F+ G    L+ T VA
Sbjct  552  KKKADFIATFLCQE---------KISTTSIHGDREQREREQALGDFRCGKCPVLVATSVA  602

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            ARG+DI  V +VIN  LP     YVHRIGR GR    G AIS    E +
Sbjct  603  ARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESD  651


 Score = 45.8 bits (107),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 0/61 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E  +   +   + +  +   T +Q  SIP+I GG D++  A+TGSGKT AF +P+
Sbjct  289  ILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTGSGKTAAFLLPI  348

Query  61   I  61
            +
Sbjct  349  L  349


>sp|A3LWX3|DHH1_PICST ATP-dependent RNA helicase DHH1 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DHH1 PE=3 SV=1
Length=509

 Score = 123 bits (309),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 158/351 (45%), Gaps = 60/351 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N  +ALI+ P+RELA QT   ++   K++    ++ ++  GG + +D +  L + V ++V
Sbjct  97   NKIQALILVPTRELALQTSQVVRTLGKHLG---IQCMVTTGGTSLKDDILRLNDPVHVLV  153

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GTPGR+ DL +    +LS+    V+DEAD +LS+ +   I ++    P      K  Q +
Sbjct  154  GTPGRVLDLAARSVADLSECPLFVMDEADKMLSREFKGIIEQILEFFP------KNRQSL  207

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT     VK   +K ++ P  ++L  E ++     +             E   K H 
Sbjct  208  LFSATF-PLAVKSFMDKHLNKPYEINLMDELTLRGITQYYA---------FVEEKQKLHC  257

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                     NT        ++S+                 +++Q+IIFC +    + L +
Sbjct  258  L--------NT--------LFSKL----------------QINQSIIFCNSTNRVELLAK  285

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
               + G         +SC   H       R +    F++G VR L+C+D+  RGIDI  V
Sbjct  286  KITELG---------YSCYYSHAKMPQQARNKVFHEFRQGKVRNLVCSDLLTRGIDIQAV  336

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRG  635
              VIN   P   + Y+HRIGR GR   +GLAI+L++       Y +    G
Sbjct  337  NVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYSLYKIEQELG  387


 Score = 51.2 bits (121),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 39/70 (56%), Gaps = 0/70 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +F +  +  E+   + E  +  P+ IQ ESIP+ L G DVL  A+ G+GKT +F IP +Q
Sbjct  31  SFEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDVLARAKNGTGKTASFIIPSLQ  90

Query  63  IVYETLKDQQ  72
            +   L   Q
Sbjct  91  QIKPKLNKIQ  100


>sp|A2QY39|DHH1_ASPNC ATP-dependent RNA helicase dhh1 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=dhh1 PE=3 SV=1
Length=505

 Score = 123 bits (309),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 107/380 (28%), Positives = 164/380 (43%), Gaps = 75/380 (20%)

Query  258  LSKAPDG------YIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKK  311
            L++A +G      +++ +    N + T+T+       ALI+ P+RELA QT +  K   K
Sbjct  88   LARAKNGTGKTAAFVIPTLERINPKSTKTQ-------ALILVPTRELALQTSHVCKTLGK  140

Query  312  YIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDE  371
            ++    +  ++  GG    D +  L + V I+VGTPGR+ DL S G  +LS+    V+DE
Sbjct  141  HLG---INVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDE  197

Query  372  ADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL  431
            AD LLS  ++  I ++ +  P      K  QV++ SAT     VK   +K M  P  ++L
Sbjct  198  ADKLLSPEFTPVIEQLLSFHP------KDRQVMLFSATF-PLIVKSFKDKHMRNPYEINL  250

Query  432  KGEDSVPD-TVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIK  490
              E ++   T ++  V    K   L     K  I                          
Sbjct  251  MDELTLRGITQYYAFVEEKQKVHCLNTLFSKLQI--------------------------  284

Query  491  ILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRK  550
                            +Q+IIFC +    + L +   + G         +SC   H    
Sbjct  285  ----------------NQSIIFCNSTNRVELLAKKITELG---------YSCFYSHARML  319

Query  551  PHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAE  610
               R +    F+ G  R L+C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR  
Sbjct  320  QQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFG  379

Query  611  RMGLAISLVATEKEKVWYHV  630
             +GLAI+L+  E     Y +
Sbjct  380  HLGLAINLINWEDRFNLYKI  399


 Score = 48.1 bits (113),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +  +  E+   + E  +  P+ IQ E+IP+ L G D+L  A+ G+GKT AF IP ++
Sbjct  49   FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLE  107


>sp|Q7XMK8|RH6_ORYSJ DEAD-box ATP-dependent RNA helicase 6 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os04g0533000 PE=2 SV=1
Length=498

 Score = 123 bits (309),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 153/346 (44%), Gaps = 60/346 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            NA + +I+ P+RELA QT    K+  K++   K++ ++  GG + +D +  L   V ++V
Sbjct  191  NAIQVVILVPTRELALQTSQVCKELGKHL---KIQVMVTTGGTSLKDDIVRLYQPVHLLV  247

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GTPGR+ DL   G   L     LV+DEAD LLS  +   I  +   +P         Q++
Sbjct  248  GTPGRILDLTKKGVCVLKNCSMLVMDEADKLLSPEFQPSIQELIRYLP------SNRQIL  301

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT     VK+  +K +  P  ++L  E ++                 + ER      
Sbjct  302  MFSATF-PVTVKEFKDKYLPKPYVINLMDELTLKGITQFYAF--------VEER------  346

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                VH  +          ++S+                 +++Q+IIFC +    + L +
Sbjct  347  --QKVHCLNT---------LFSKL----------------QINQSIIFCNSVNRVELLAK  379

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
               + G         +SC  +H       R +    F+ G  R L+CTD+  RGIDI  V
Sbjct  380  KITELG---------YSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAV  430

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
              VIN   P   + Y+HR+GR GR   +GLA++L+  E     Y +
Sbjct  431  NVVINFDFPKSAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRI  476


 Score = 49.7 bits (117),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 23/59 (39%), Positives = 35/59 (59%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +  +  E+   + E  +  P+ IQ ESIP+ L G D+L  A+ G+GKT AF IP ++
Sbjct  126  FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE  184


>sp|Q9JIK5|DDX21_MOUSE Nucleolar RNA helicase 2 OS=Mus musculus 
OX=10090 GN=Ddx21 PE=1 SV=3
Length=851

 Score = 125 bits (314),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 98/340 (29%), Positives = 157/340 (46%), Gaps = 54/340 (16%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            AP+ L++ P+RELA Q   +     K     KL      GG     Q+  + +G+DI+VG
Sbjct  332  APQVLVLAPTRELANQVSKDFSDITK-----KLSVACFYGGTPYGGQIERMRSGIDILVG  386

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGR+ D +  GKL+L++++ +VLDE D +L  G++D +  +     +  S+    Q ++
Sbjct  387  TPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSE-DNPQTLL  445

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT                P WV    +  +  T   V        D + ++  K+ I 
Sbjct  446  FSATC---------------PHWVFNVAKKYMKSTYEQV--------DLIGKKTQKAAIT  482

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
             + +  K +          W+E   ++     +R    H+  + IIFC TK D   L Q 
Sbjct  483  VEHLAIKCH----------WTERAAVIGD--VIRVYSGHQ-GRTIIFCETKKDAQELSQN  529

Query  526  F-IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
              I+Q               LHGD    +R+  L+ F+ G+   L+ T+VAARG+DI  V
Sbjct  530  TCIKQ-----------DAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEV  578

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
              V+    P + ++Y+HR GR GRA R G+ I     ++E
Sbjct  579  DLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNKEE  618


 Score = 40.8 bits (94),  Expect = 0.058, Method: Compositional matrix adjust.
 Identities = 23/75 (31%), Positives = 46/75 (61%), Gaps = 4/75 (5%)

Query  3    AFSEMGVMPEIAQAVEE--MDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            AFS   +  E  + ++   +++L P  IQA++   +  G D++  A TG+GKT +F+IP+
Sbjct  259  AFSNFPISEETVKLLKARGVNFLFP--IQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPL  316

Query  61   IQIVYETLKDQQEGK  75
            I+ +   L++++ G+
Sbjct  317  IEKLQGGLQERKRGR  331


>sp|P54824|DDX6_XENLA ATP-dependent RNA helicase ddx6 OS=Xenopus 
laevis OX=8355 GN=ddx6 PE=1 SV=2
Length=481

 Score = 122 bits (307),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 92/333 (28%), Positives = 149/333 (45%), Gaps = 59/333 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +A+++ P+RELA Q      Q  K++   K+  +   GG   RD +  L++ V +V+ TP
Sbjct  165  QAMVIVPTRELALQVSQICIQVSKHMGGAKV--MATTGGTNLRDDIMRLDDTVHVVIATP  222

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ DL+  G   +  ++ +VLDEAD LLSQ +   +  +   +P      K  Q+++ S
Sbjct  223  GRILDLIKKGVAKVDHIQMIVLDEADKLLSQDFMQIMEDIIMTLP------KNRQILLYS  276

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT     V+K     +  P  ++L  E ++     +           + ER         
Sbjct  277  ATF-PLSVQKFMTLHLQKPYEINLMEELTLKGVTQYYAY--------VTER--------Q  319

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
             VH  +          ++S                  +++Q+IIFC +    + L +   
Sbjct  320  KVHCLNT---------LFSRL----------------QINQSIIFCNSSQRVELLAKKIS  354

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
            Q G         +SC  +H   +   R +    F+ G  R L+CTD+  RGIDI  V  V
Sbjct  355  QLG---------YSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVV  405

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            IN   P   + Y+HRIGR GR   +GLAI+L+ 
Sbjct  406  INFDFPKLAETYLHRIGRSGRFGHLGLAINLIT  438


 Score = 54.3 bits (129),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 24/59 (41%), Positives = 38/59 (64%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +  +  E+   + EM W  P+ IQ ESIP+ L G D+L  A+ G+GK+GA+ IP+++
Sbjct  97   FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE  155


>sp|Q5ADL0|PRP5_CANAL Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) 
OX=237561 GN=PRP5 PE=3 SV=1
Length=884

 Score = 125 bits (314),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 97/352 (28%), Positives = 168/352 (48%), Gaps = 50/352 (14%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P  LI+ P+RELA Q    I  F K  +N  LR     GG +  +Q++ L+ GV+I+VGT
Sbjct  368  PIGLILSPTRELALQIEKEILNFTKRNNN--LRVCCCYGGSSIENQINELKKGVEIIVGT  425

Query  347  PGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            PGR+ DL++      LNL +  F+VLDEAD +   G+   +N++   + Q+  D    Q 
Sbjct  426  PGRVIDLLAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNKI---LTQIRPDR---QT  479

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            ++ SAT     ++ L+++I+  P  + + G   V   +   VV            L ++ 
Sbjct  480  VLFSATFPR-KMETLAKQILTDPVVIIVGGISVVAPEIKQEVV------------LFETS  526

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                D + +              E +  +   Y +    EH   + ++F   + D D L 
Sbjct  527  AEEQDKYKQQRV-----------EKLHDILTNYQI----EHPDSKILVFTEKQNDADELV  571

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD--VRFLICTDVAARGIDI  581
               +          +++  + +HG +   +RK  ++ F   D  +  LI T +AARG+D+
Sbjct  572  ANLL---------SNKYPAIAIHGGKDQMDRKYAIKEFASMDSGINILIATSIAARGLDV  622

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
              +  VIN   P+  ++YVHR+GR GRA   G AI+ V++ + K  +++  +
Sbjct  623  RNLGLVINFDPPNHMEDYVHRVGRTGRAGAKGNAITFVSSSQPKEVFNLVKA  674


 Score = 43.5 bits (101),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 22/57 (39%), Positives = 38/57 (67%), Gaps = 4/57 (7%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTI  81
            P+ IQ++++P IL G DV+  A+TGSGKT ++ +P+++     ++DQQ  K  +  I
Sbjct  317  PSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLR----HIQDQQFSKDNQGPI  369


>sp|A6ZXU0|DBP10_YEAS7 ATP-dependent RNA helicase DBP10 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DBP10 PE=3 
SV=1
Length=995

 Score = 125 bits (314),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 159/349 (46%), Gaps = 36/349 (10%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +A+I+ PSRELA QT N  K F +     +LR +L+ GG +  +Q  ++    D+++ TP
Sbjct  209  RAVILSPSRELAMQTFNVFKDFAR---GTELRSVLLTGGDSLEEQFGMMMTNPDVIIATP  265

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR   L     L+L  V ++V DEAD L   G+ + +N +   +P         Q ++ S
Sbjct  266  GRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLASLPTTR------QTLLFS  319

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDR-------LWERLG  460
            ATL +  V  +   +++ P  V L  E  V + +  + +  +   DR       L E + 
Sbjct  320  ATLPNSLVDFVKAGLVN-PVLVRLDAETKVSENLEMLFLS-SKNADREANLLYILQEIIK  377

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA---------II  511
                 ++ +    N+   A+S        +  +  +     ++ KM  A         I+
Sbjct  378  IPLATSEQLQKLQNSNNEADSDSDDENDRQKKRRNFKKEKFRKQKMPAANELPSEKATIL  437

Query  512  FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLIC  571
            F  T+   + + Q     G         +    ++G    H RK+ L  F+ G    L+ 
Sbjct  438  FVPTRHHVEYISQLLRDCG---------YLISYIYGTLDQHARKRQLYNFRAGLTSILVV  488

Query  572  TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            TDVAARG+DI  +  VIN TLP   + +VHR+GR  RA   G A S+VA
Sbjct  489  TDVAARGVDIPMLANVINYTLPGSSKIFVHRVGRTARAGNKGWAYSIVA  537


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 22/60 (37%), Positives = 36/60 (60%), Gaps = 0/60 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F   G+   +   ++   +  PT IQ ++IPLIL   D++  A TGSGKT AF +P+++
Sbjct  138  SFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVE  197


>sp|Q6FNK8|RRP3_CANGA ATP-dependent rRNA helicase RRP3 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=RRP3 PE=3 SV=1
Length=493

 Score = 122 bits (307),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 147/333 (44%), Gaps = 59/333 (18%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            A ++ P+RELA+Q           +    +R   I+GG+   DQ   L     I++ TPG
Sbjct  144  ACVLAPTRELAQQIKETFDSLGSLMG---VRTTCIVGGMNMMDQARDLMRKPHIIIATPG  200

Query  349  RL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            RL D L +T   +L  ++FLV+DEAD LL   +   ++R+   IP   + G+     + S
Sbjct  201  RLMDHLENTKGFSLKNLKFLVMDEADRLLDMEFGPVLDRILKIIP---TKGR--TTYLFS  255

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+ S  + KL    +  P    +  +    DT+   ++ V                   
Sbjct  256  ATMTS-KIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVV-------------------  295

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                     PG             LK  + +  + E      IIF RTK + + L     
Sbjct  296  ---------PGG------------LKNTFLIYLLNEFIGKTVIIFTRTKANAERLSGLC-  333

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
                       +FS   LHGD   ++R   L+ FK G    L+ TDVAARG+DI  V  V
Sbjct  334  --------NLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIV  385

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            IN  +P + ++Y+HR+GR  RA R G +ISLV+
Sbjct  386  INYDIPVDSKSYIHRVGRTARAGRSGKSISLVS  418


 Score = 68.9 bits (167),  Expect = 8e-11, Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 50/70 (71%), Gaps = 3/70 (4%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F+++ ++PE+ QA + +++  PT IQA +IP  L G DV+  A+TGSGKT AF+IP++ 
Sbjct  74   SFAQLNLVPELIQACQNLNFTKPTPIQARAIPPALAGSDVIGLAQTGSGKTAAFAIPILN  133

Query  63   IVYETLKDQQ  72
             ++E   DQQ
Sbjct  134  KLWE---DQQ  140


>sp|Q54E49|DDX6_DICDI Probable ATP-dependent RNA helicase ddx6 
OS=Dictyostelium discoideum OX=44689 GN=ddx6 PE=3 SV=1
Length=423

 Score = 121 bits (304),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 97/348 (28%), Positives = 153/348 (44%), Gaps = 60/348 (17%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + LI+ P+RELA QT    K+  KY++   ++ +   GG + +D +  L N V I+V TP
Sbjct  119  QVLILVPTRELALQTSQVCKELGKYMN---VQVMASTGGTSLKDDIMRLYNPVHILVATP  175

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ DL      NLS    +++DEAD LLSQ +   + ++ N +PQ      + Q+++ S
Sbjct  176  GRVLDLAQKNVANLSNCHTMIMDEADKLLSQEFQPLVEQLINFLPQ------QRQILLFS  229

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT     VK   E  +     ++L  E ++     +             E   K H    
Sbjct  230  ATF-PVTVKSFKEHYLQQAFEINLMEELTLKGVTQYYA---------FVEERQKIHCL--  277

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                  NT        ++S+                 +++Q+IIFC +    + L +   
Sbjct  278  ------NT--------LFSKL----------------QINQSIIFCNSVNRVELLAKKIT  307

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
            + G         +SC  +H       R +    F+ G  R L+ +D+  RGIDI  V  V
Sbjct  308  ELG---------YSCFFIHAKMVQAHRNRVFHDFRNGACRNLVSSDLFTRGIDIQDVNVV  358

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRG  635
            IN   P   + Y+HRIGR GR   +GLAI+L+  E     Y +    G
Sbjct  359  INFDFPKHSETYLHRIGRSGRFGHLGLAINLITYEDRFSLYKIEQELG  406


 Score = 46.2 bits (108),  Expect = 7e-04, Method: Compositional matrix adjust.
 Identities = 18/59 (31%), Positives = 38/59 (64%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F ++ +  ++ + + E  ++ P+ IQ ++IP+ L G D++  A+ G+GKT +F IP ++
Sbjct  51   FDDLHLKRDLLRGIFEKGYVKPSPIQEKAIPIALAGRDIMARAKNGTGKTASFLIPALE  109


>sp|Q3B8Q1|DDX21_RAT Nucleolar RNA helicase 2 OS=Rattus norvegicus 
OX=10116 GN=Ddx21 PE=2 SV=1
Length=782

 Score = 125 bits (313),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 98/340 (29%), Positives = 157/340 (46%), Gaps = 54/340 (16%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            AP+ L++ P+RELA Q   +     K     KL      GG     Q+  + +G+DI+VG
Sbjct  256  APQVLVLAPTRELANQVSKDFSDITK-----KLSVACFYGGTPYGGQIERMRSGIDILVG  310

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGR+ D +  GKL+L++++ +VLDE D +L  G++D +  +     +  S+    Q ++
Sbjct  311  TPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSE-DNPQTLL  369

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT                P WV    +  +  T   V        D + ++  K+ I 
Sbjct  370  FSATC---------------PHWVFNVAKKYMKSTYEQV--------DLIGKKTQKAAIT  406

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
             + +  K +          W+E   ++     +R    H+  + IIFC TK D   L Q 
Sbjct  407  VEHLAIKCH----------WTERAAVIGD--VIRVYSGHQ-GRTIIFCETKKDAQELSQN  453

Query  526  F-IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
              I+Q               LHGD    +R+  L+ F+ G+   L+ T+VAARG+DI  V
Sbjct  454  TCIKQ-----------DAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEV  502

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
              V+    P + ++Y+HR GR GRA R G+ I     ++E
Sbjct  503  DLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEE  542


 Score = 41.2 bits (95),  Expect = 0.040, Method: Compositional matrix adjust.
 Identities = 23/75 (31%), Positives = 46/75 (61%), Gaps = 4/75 (5%)

Query  3    AFSEMGVMPEIAQAVEE--MDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            AFS   +  E  + ++   +++L P  IQA++   +  G D++  A TG+GKT +F+IP+
Sbjct  183  AFSNFPISEETVKLLKARGVNFLFP--IQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPL  240

Query  61   IQIVYETLKDQQEGK  75
            I+ +   L++++ G+
Sbjct  241  IEKLQGGLQERKRGR  255


>sp|Q12389|DBP10_YEAST ATP-dependent RNA helicase DBP10 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 
GN=DBP10 PE=1 SV=2
Length=995

 Score = 125 bits (314),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 159/349 (46%), Gaps = 36/349 (10%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +A+I+ PSRELA QT N  K F +     +LR +L+ GG +  +Q  ++    D+++ TP
Sbjct  209  RAVILSPSRELAMQTFNVFKDFAR---GTELRSVLLTGGDSLEEQFGMMMTNPDVIIATP  265

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR   L     L+L  V ++V DEAD L   G+ + +N +   +P         Q ++ S
Sbjct  266  GRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLASLPTTR------QTLLFS  319

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDR-------LWERLG  460
            ATL +  V  +   +++ P  V L  E  V + +  + +  +   DR       L E + 
Sbjct  320  ATLPNSLVDFVKAGLVN-PVLVRLDAETKVSENLEMLFLS-SKNADREANLLYILQEIIK  377

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA---------II  511
                 ++ +    N+   A+S        +  +  +     ++ KM  A         I+
Sbjct  378  IPLATSEQLQKLQNSNNEADSDSDDENDRQKKRRNFKKEKFRKQKMPAANELPSEKATIL  437

Query  512  FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLIC  571
            F  T+   + + Q     G         +    ++G    H RK+ L  F+ G    L+ 
Sbjct  438  FVPTRHHVEYISQLLRDCG---------YLISYIYGTLDQHARKRQLYNFRAGLTSILVV  488

Query  572  TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            TDVAARG+DI  +  VIN TLP   + +VHR+GR  RA   G A S+VA
Sbjct  489  TDVAARGVDIPMLANVINYTLPGSSKIFVHRVGRTARAGNKGWAYSIVA  537


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 22/60 (37%), Positives = 36/60 (60%), Gaps = 0/60 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F   G+   +   ++   +  PT IQ ++IPLIL   D++  A TGSGKT AF +P+++
Sbjct  138  SFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVE  197


>sp|Q9DF36|DD21B_XENLA Nucleolar RNA helicase 2-B OS=Xenopus laevis 
OX=8355 GN=ddx21-b PE=2 SV=2
Length=800

 Score = 125 bits (313),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 155/337 (46%), Gaps = 59/337 (18%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            AP+ +I+ P+RELA Q  N ++   K     KL+     GG   + Q+  +++G+D +VG
Sbjct  295  APRVIILTPTRELAIQITNELRSMTK-----KLKVACFYGGTPYQQQVFAIKDGIDFLVG  349

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGR+ DLV   +L+L+ ++ +VLDE D +   G+S+ +  + + +       +  Q ++
Sbjct  350  TPGRIRDLVQNYRLDLTALKHVVLDEVDMMFDVGFSEQVEEILS-VRYKPDPEENPQTLL  408

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDS--VPDTVHHVVVPVNPKTDRLWERLGKSH  463
             SAT   +      + +      VDL G  S     TV H+ +  N        R  K+ 
Sbjct  409  FSATCPDWMYNVAKKYMRKQYEKVDLVGHRSQKAAITVEHLAIECN--------RSQKAA  460

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
            +  D                     +++  G +           + IIFC +K+    L 
Sbjct  461  VLGD--------------------IVQVYSGSHG----------KTIIFCDSKLQAHELS  490

Query  524  QY--FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
                 ++Q   P           LHGD +  ER+  L+ F++G    LI T+VAARG+DI
Sbjct  491  TNCGSLKQSAKP-----------LHGDLQQKEREVVLKGFRQGTFEVLIATNVAARGLDI  539

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
              V  V+  + P E   YVHR GR GRA R G+ ISL
Sbjct  540  PEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGVCISL  576


 Score = 39.7 bits (91),  Expect = 0.11, Method: Compositional matrix adjust.
 Identities = 21/57 (37%), Positives = 36/57 (63%), Gaps = 5/57 (9%)

Query  22   WLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGK  78
            +L P  IQ+++   +  G DV++ A TG+GKT +F IP+++ + E   DQQ   +G+
Sbjct  243  YLFP--IQSKTFHTVYSGKDVVVQARTGTGKTFSFGIPLVERLSE---DQQPLARGR  294


>sp|Q4HZ42|DBP10_GIBZE ATP-dependent RNA helicase DBP10 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 
/ NRRL 31084 / PH-1) OX=229533 GN=DBP10 PE=3 SV=1
Length=897

 Score = 125 bits (313),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 100/333 (30%), Positives = 154/333 (46%), Gaps = 28/333 (8%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ PSRELA QTL  +K+F +  D   L+ +L++GG +  +Q   +    DIV+ TP
Sbjct  154  RALIMSPSRELAIQTLKVVKEFSRGTD---LKCVLLVGGDSLEEQFGYMAANPDIVIATP  210

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR   L     L+LS ++++V DEAD L   G++  +  + + +P         Q ++ S
Sbjct  211  GRFLHLKVEMSLDLSSIKYVVFDEADRLFEMGFAAQLTEILHALPPSR------QSLLFS  264

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS-HIRT  466
            ATL +  V+  +   +  P+ V L  E  V   +      V     +  E+ G   HI  
Sbjct  265  ATLPASLVE-FARAGLQDPSLVRLDAEQKVSPDLESAFFAV-----KGAEKEGSLLHILH  318

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
            D +     +  G N+        +    +       EH     IIF  TK   + L    
Sbjct  319  DVIKMPVGSPEGVNNDSEKGSKKRKRGADGGSGKPTEH---STIIFTATKHHVEYLANLL  375

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
            I  G         F+   ++G      R+  +E F+ G    L+ TDVAARGIDI  +  
Sbjct  376  IYAG---------FAVSYVYGSLDQTARRIQVEDFRMGKTNILVVTDVAARGIDIPVLAN  426

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            VIN   P + + +VHR+GR  RA + G + SLV
Sbjct  427  VINFDFPPQPKVFVHRVGRTARAGQRGWSYSLV  459


 Score = 53.1 bits (126),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  MG+   + +A+    + +PT IQ ++IPLIL   D++  A TGSGKT AF IP+I+
Sbjct  84   FQAMGLNNNLLKAITRKGFSVPTPIQRKAIPLILDRKDLVGMARTGSGKTAAFVIPMIE  142


>sp|Q75EW9|RRP3_EREGS ATP-dependent rRNA helicase RRP3 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=RRP3 PE=3 SV=2
Length=486

 Score = 122 bits (306),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 96/333 (29%), Positives = 145/333 (44%), Gaps = 59/333 (18%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            A I+ P+RELA+Q           +    +R   I+GG+   DQ   L     I++ TPG
Sbjct  137  ACILAPTRELAQQIKETFDSLGSLMG---VRTTCIVGGMNMMDQARDLMRKPHIIIATPG  193

Query  349  RL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            RL D L +T    L +++FLV+DEAD LL   +   ++R+   IP      K     + S
Sbjct  194  RLMDHLENTKGFALRKLQFLVMDEADRLLDMEFGPVLDRILKNIPT-----KGRTTYLFS  248

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+ S  + KL    +  P    +  +    DT+   ++ V                   
Sbjct  249  ATMTS-KIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLIVV-------------------  288

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                     PG             LK  + +  + E      I+F RTK + + +     
Sbjct  289  ---------PGG------------LKNTFLIYLLNEFIGKTTIVFTRTKANAERISGLC-  326

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
                       +FS   LHGD   ++R   L+ FK G    L+ TDVAARG+DI  V  V
Sbjct  327  --------NLLEFSATALHGDLNQNQRTGALDLFKAGKKSILVATDVAARGLDIPSVDLV  378

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            IN  +P + ++Y+HR+GR  RA R G ++SLV+
Sbjct  379  INYDIPVDSKSYIHRVGRTARAGRSGKSVSLVS  411


 Score = 62.4 bits (150),  Expect = 8e-09, Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 50/71 (70%), Gaps = 3/71 (4%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            ++F E+ ++PE+ +A + +++  PT IQ+++IP  L G D++  A+TGSGKT AF+IP++
Sbjct  66   SSFRELDLVPELIEACDNLNFTKPTPIQSKAIPPALQGKDIIGLAQTGSGKTAAFAIPIL  125

Query  62   QIVYETLKDQQ  72
              ++    DQQ
Sbjct  126  NRLWH---DQQ  133


>sp|A1CJ18|DHH1_ASPCL ATP-dependent RNA helicase dhh1 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dhh1 PE=3 SV=1
Length=503

 Score = 122 bits (307),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 107/380 (28%), Positives = 163/380 (43%), Gaps = 75/380 (20%)

Query  258  LSKAPDG------YIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKK  311
            L++A +G      +++ +    N + T+T+       ALI+ P+RELA QT    K   K
Sbjct  88   LARAKNGTGKTAAFVIPTLERINPKSTKTQ-------ALILVPTRELALQTSQVCKTLGK  140

Query  312  YIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDE  371
            ++    +  ++  GG    D +  L + V I+VGTPGR+ DL S G  +LS+    V+DE
Sbjct  141  HLG---INVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDE  197

Query  372  ADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL  431
            AD LLS  ++  I ++ +  P      K  QV++ SAT     VK   +K M  P  ++L
Sbjct  198  ADKLLSPEFTPVIEQLLSFHP------KDRQVMLFSATF-PLIVKSFKDKHMRNPYEINL  250

Query  432  KGEDSVPD-TVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIK  490
              E ++   T ++  V    K   L     K  I                          
Sbjct  251  MDELTLRGITQYYAFVEEKQKVHCLNTLFSKLQI--------------------------  284

Query  491  ILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRK  550
                            +Q+IIFC +    + L +   + G         +SC   H    
Sbjct  285  ----------------NQSIIFCNSTNRVELLAKKITELG---------YSCFYSHARML  319

Query  551  PHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAE  610
               R +    F+ G  R L+C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR  
Sbjct  320  QQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFG  379

Query  611  RMGLAISLVATEKEKVWYHV  630
             +GLAI+L+  E     Y +
Sbjct  380  HLGLAINLINWEDRFNLYKI  399


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +  +  E+   + E  +  P+ IQ E+IP+ L G D+L  A+ G+GKT AF IP ++
Sbjct  49   FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLE  107


>sp|A1DNG2|DBP10_NEOFI ATP-dependent RNA helicase dbp10 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 
/ FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp10 
PE=3 SV=1
Length=934

 Score = 125 bits (313),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 100/346 (29%), Positives = 156/346 (45%), Gaps = 43/346 (12%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + LI+ PSRELA QTL  +K+  +  D   L+ +L++GG +  +Q +++    DIV+ TP
Sbjct  162  RGLILSPSRELALQTLKVVKELGRGTD---LKSVLLVGGDSLEEQFAMMAGNPDIVIATP  218

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR   L     L+LS +R++V DEAD L   G++  +  + + +P         Q ++ S
Sbjct  219  GRFLHLKVEMNLDLSSIRYVVFDEADRLFEMGFAAQLTEILHGLPA------NRQTLLFS  272

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDR------LWERL--  459
            ATL    V+  +   +  PT V L  E  +   + +    V            L E +  
Sbjct  273  ATLPKSLVE-FARAGLQEPTLVRLDTESKISPDLQNAFFSVKSSEKEGALLYILQEVIKM  331

Query  460  --GKSHI----RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFC  513
              G + +    + +D  AK+         EM          E AV   +       I+F 
Sbjct  332  PTGPTEVSQQRKEEDASAKNWKNKKRKRAEM----------EKAVNMRESPTKHSTIVFA  381

Query  514  RTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTD  573
             TK   D L     + G         F+   ++G      RK  ++ F+ G    L+ TD
Sbjct  382  ATKHHVDYLYSLLSEAG---------FAVSYVYGSLDQTARKIQVQNFRTGMTNILVVTD  432

Query  574  VAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            VAARGIDI  +  VIN   P + + ++HR+GR  RA R G + SLV
Sbjct  433  VAARGIDIPILANVINYDFPSQPKIFIHRVGRTARAGRKGWSYSLV  478


 Score = 53.9 bits (128),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  MG+   + +A+    + +PT IQ ++IP+I+   DV+  A TGSGKT AF IP+I+
Sbjct  92   FQAMGLSANLLKAIARKGFSVPTPIQRKTIPVIMDDQDVVGMARTGSGKTAAFVIPMIE  150


>sp|Q0CMM8|DBP10_ASPTN ATP-dependent RNA helicase dbp10 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dbp10 
PE=3 SV=1
Length=928

 Score = 125 bits (313),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 158/353 (45%), Gaps = 56/353 (16%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + LI+ PSRELA QTL  +K+  K  D   L+ +L++GG +  +Q  ++    DIV+ TP
Sbjct  161  RGLILSPSRELALQTLKVVKELGKGTD---LKSVLLVGGDSLEEQFGMMAGNPDIVIATP  217

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR   L     L+LS +R++V DEAD L   G++  +  + + +P         Q ++ S
Sbjct  218  GRFLHLKVEMNLDLSSIRYVVFDEADRLFEMGFAAQLTEILHGLPTTR------QTLLFS  271

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSV-PD-------------------TVHHVV-V  446
            ATL    V+  +   +  PT + L  E  + PD                    +H V+ +
Sbjct  272  ATLPKSLVE-FARAGLQEPTLIRLDTESKISPDLQNAFFSVKSADKEGALLYILHEVIKM  330

Query  447  PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM  506
            P  P    + +RL +          K N++   NS +     +     + AV   +    
Sbjct  331  PTGPT--EVAQRLQEE---------KANSKDSKNSKKRKRSEM-----DKAVNMKESPTK  374

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
               I+F  TK   D L     + G         F+    +G      RK  +  F+ G  
Sbjct  375  HSTIVFAATKHHVDYLYSLLREAG---------FAVSYAYGSLDQTARKIQVNNFRTGLS  425

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
              L+ TDVAARGIDI  +  VIN   P + + +VHR+GR  RA R G + SLV
Sbjct  426  NILVVTDVAARGIDIPILANVINYDFPSQPKIFVHRVGRTARAGRKGWSYSLV  478


 Score = 53.9 bits (128),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  MG+   + +A+    + +PT IQ ++IP+I+   DV+  A TGSGKT AF IP+I+
Sbjct  91   FQAMGLNANLLKAITRKGFSVPTPIQRKTIPVIMDDRDVVGMARTGSGKTAAFVIPMIE  149


>sp|Q109G2|RH12_ORYSJ DEAD-box ATP-dependent RNA helicase 12 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os10g0503700 PE=2 
SV=2
Length=521

 Score = 122 bits (307),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 155/346 (45%), Gaps = 60/346 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            NA + +I+ P+RELA QT    K+  KY++   ++ ++  GG + +D +  L   V ++V
Sbjct  214  NAIQVVILVPTRELALQTSQVCKELGKYLN---IQVMVSTGGTSLKDDIMRLYQPVHLLV  270

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GTPGR+ DL   G   L     LV+DEAD LL+  +   I ++ + +P         Q++
Sbjct  271  GTPGRILDLTRKGICVLKDCSMLVMDEADKLLAPEFQPSIEQLIHFLP------ANRQLL  324

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT     VK   EK +  P  ++L  E ++     +           + ER      
Sbjct  325  MFSATF-PVTVKDFKEKYLPRPYVINLMDELTLKGITQYYAF--------VEER------  369

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                VH  +          ++S+                 +++Q+IIFC +    + L +
Sbjct  370  --QKVHCLNT---------LFSKL----------------QINQSIIFCNSVNRVELLAK  402

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
               + G         +SC  +H       R +    F+ G  R L+CTD+  RGIDI  V
Sbjct  403  KITELG---------YSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAV  453

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
              VIN   P   + Y+HR+GR GR   +GLA++L+  E     Y +
Sbjct  454  NVVINFDFPKTSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRI  499


 Score = 49.7 bits (117),  Expect = 8e-05, Method: Compositional matrix adjust.
 Identities = 23/59 (39%), Positives = 35/59 (59%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +  +  E+   + E  +  P+ IQ ESIP+ L G D+L  A+ G+GKT AF IP ++
Sbjct  149  FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE  207


>sp|D0PV95|DDX3_CAEEL ATP-dependent RNA helicase laf-1 OS=Caenorhabditis 
elegans OX=6239 GN=laf-1 PE=1 SV=1
Length=708

 Score = 124 bits (311),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 153/342 (45%), Gaps = 56/342 (16%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P AL++ P+REL+ Q  N  ++F      P    LL  G    +DQ+  L  G  I++ T
Sbjct  316  PSALVLSPTRELSLQIFNESRKFA--YRTPITSALLYGGRENYKDQIHKLRLGCHILIAT  373

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL D++  G + +   R+LVLDEAD +L  G+           PQ+       Q++ C
Sbjct  374  PGRLIDVMDQGLIGMEGCRYLVLDEADRMLDMGFE----------PQIR------QIVEC  417

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDT-VHHVVVPVNPKTDRLWERLGKSHIR  465
            +  + S + +  +     FP  + L  +D + +  V   V  V   ++ + +++      
Sbjct  418  N-RMPSKEERITAMFSATFPKEIQLLAQDFLKENYVFLAVGRVGSTSENIMQKI------  470

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH-KMDQAIIFCRTKIDCDNLEQ  524
                              +W E  +  K  Y +  +         ++F  TK    +L  
Sbjct  471  ------------------VWVEEDE--KRSYLMDLLDATGDSSLTLVFVETKRGASDLAY  510

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
            Y  +Q          +  V +HGD K  ER+++L+ F+ G    L+ T VAARG+DI  V
Sbjct  511  YLNRQ---------NYEVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARGLDIPNV  561

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
             +VIN  LP +   YVHRIGR GR   +GLA S    +   +
Sbjct  562  KHVINYDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDKNRNI  603


 Score = 51.2 bits (121),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 41/66 (62%), Gaps = 0/66 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++ FS++ +   I + ++   +  PT +Q  SIP + GG D++  A+TGSGKT AF +P+
Sbjct  230  ISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTGSGKTAAFLVPL  289

Query  61   IQIVYE  66
            +  + +
Sbjct  290  VNAILQ  295


>sp|Q2U5A2|DHH1_ASPOR ATP-dependent RNA helicase dhh1 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dhh1 
PE=3 SV=1
Length=511

 Score = 122 bits (306),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 161/369 (44%), Gaps = 75/369 (20%)

Query  258  LSKAPDG------YIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKK  311
            L++A +G      +++ +    N + T+T+       ALI+ P+RELA QT +  K   K
Sbjct  88   LARAKNGTGKTAAFVIPTLERINPKSTKTQ-------ALILVPTRELALQTSHVCKTLGK  140

Query  312  YIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDE  371
            ++    +  ++  GG    D +  L + V I+VGTPGR+ DL S G  +LS+    V+DE
Sbjct  141  HLG---INVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDE  197

Query  372  ADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL  431
            AD LLS  ++  I ++ +  P      K  QV++ SAT     VK   +K M  P  ++L
Sbjct  198  ADKLLSPEFTPVIEQLLSFHP------KDRQVMLFSATF-PLIVKSFKDKHMRNPYEINL  250

Query  432  KGEDSVPD-TVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIK  490
              E ++   T ++  V    K   L     K  I                          
Sbjct  251  MDELTLRGITQYYAFVEEKQKVHCLNTLFSKLQI--------------------------  284

Query  491  ILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRK  550
                            +Q+IIFC +    + L +   + G         +SC   H    
Sbjct  285  ----------------NQSIIFCNSTNRVELLAKKITELG---------YSCFYSHARML  319

Query  551  PHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAE  610
               R +    F+ G  R L+C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR  
Sbjct  320  QQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFG  379

Query  611  RMGLAISLV  619
             +GLAI+L+
Sbjct  380  HLGLAINLI  388


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 0/61 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +  +  E+   + E  +  P+ IQ E+IP+ L G D+L  A+ G+GKT AF IP ++ 
Sbjct  49   FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER  108

Query  64   V  64
            +
Sbjct  109  I  109


>sp|Q5RC67|DDX23_PONAB Probable ATP-dependent RNA helicase DDX23 
OS=Pongo abelii OX=9601 GN=DDX23 PE=2 SV=1
Length=820

 Score = 124 bits (311),  Expect = 5e-28, Method: Compositional matrix adjust.
 Identities = 104/357 (29%), Positives = 157/357 (44%), Gaps = 59/357 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P A+I+ P+RELA+Q      +F K +    +R + +IGG++  DQ   L  G +IV+ T
Sbjct  469  PYAIILAPTRELAQQIEEETIKFGKPLG---IRTVAVIGGISREDQGFRLRMGCEIVIAT  525

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL D++    L  S+  ++VLDEAD ++  G+   + ++   +P         +    
Sbjct  526  PGRLIDVLENRYLVPSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDP  585

Query  407  SATLHSFDV--KKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
               L +F+    K  + +M   T         +P  V               ERL +S++
Sbjct  586  EKMLANFESGKHKYRQTVMFTAT---------MPPAV---------------ERLARSYL  621

Query  465  RTDDVHAKDNTRPG------ANSPEMWSEAIKILKGEYAVR----AIKEHKMDQAII-FC  513
            R          RP       A  P    E    L  E   R    AI E   D  II F 
Sbjct  622  R----------RPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFV  671

Query  514  RTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTD  573
              K  CD L +   + G         ++   LHG +   +R+  L   K G    L+ TD
Sbjct  672  NQKKGCDVLAKSLEKMG---------YNACTLHGGKGQEQREFALSNLKAGAKDILVATD  722

Query  574  VAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
            VA RGIDI  V  V+N  +    ++Y+HRIGR GRA + G+AI+ +  E   V+Y +
Sbjct  723  VAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYEL  779


 Score = 49.7 bits (117),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 39/61 (64%), Gaps = 0/61 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + ++ +  + P I + +++  +  PT IQ ++IP+ L   D++  AETGSGKT AF IP+
Sbjct  390  IRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPL  449

Query  61   I  61
            +
Sbjct  450  L  450


>sp|Q2UKX3|DBP8_ASPOR ATP-dependent RNA helicase dbp8 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp8 
PE=3 SV=1
Length=443

 Score = 121 bits (303),  Expect = 5e-28, Method: Compositional matrix adjust.
 Identities = 104/342 (30%), Positives = 154/342 (45%), Gaps = 64/342 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPK-LRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            A+++ P+RELA Q    IK     I  P+ ++ LLI GG   R Q   L     +V+ TP
Sbjct  84   AVVLTPTRELALQIYEQIKA----ISAPQSMKPLLITGGTDMRSQALALSQRPHVVIATP  139

Query  348  GRLDDLVSTGK----LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            GRL D ++T        L +VR +VLDEAD LL+ G    +  +   +  +    +R Q 
Sbjct  140  GRLADHINTSGEDTVCGLKRVRMVVLDEADRLLAPGPGSMLPDVETCLSALPPSSER-QT  198

Query  404  IVCSATLHSFDVKKLSE------KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWE  457
            ++ +ATL + +V+ L        K   F T +  +   ++P T+    + V P T R  E
Sbjct  199  LLFTATL-TPEVRALKSMPRAENKPPVFVTEISTENNGAIPPTLKQTYLKV-PMTHR--E  254

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
                  + T+    +++T+P                               AIIFC    
Sbjct  255  AFLHVLLSTE----RNSTKP-------------------------------AIIFCNHTK  279

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
              D LE+          +  H+ +   LH      ER  NL RF+    R L+ TDVA+R
Sbjct  280  TADLLERML-------RRLSHRVTS--LHSLLPQSERNSNLARFRASAARILVATDVASR  330

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            G+DI  V  VIN  +P    +YVHR+GR  RA R G A++LV
Sbjct  331  GLDIPSVSLVINFDVPRNPDDYVHRVGRTARAGRHGEAVTLV  372


 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 23/58 (40%), Positives = 34/58 (59%), Gaps = 0/58 (0%)

Query  5   SEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           + + V P +  ++  M    PT IQ   IP IL G D +  + TGSGKT AF++P++Q
Sbjct  16  TTLNVSPWLVGSLTTMAVRKPTAIQKACIPEILKGRDCIGGSRTGSGKTIAFAVPILQ  73


>sp|Q9P6N8|RRP3_SCHPO ATP-dependent rRNA helicase rrp3 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp3 
PE=3 SV=1
Length=465

 Score = 121 bits (304),  Expect = 5e-28, Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 161/367 (44%), Gaps = 64/367 (17%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P+   A+++ P+RELA Q     +QF+    +  +R ++I+GG+    Q   L     ++
Sbjct  112  PSPFFAVVLAPTRELAYQI---SEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVL  168

Query  344  VGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            V TPGRL D L +T   +L  +++L++DEAD LL   +   I+++   IP         +
Sbjct  169  VCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPH------ERR  222

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV--HHVVVPVNPKTDRLWERLG  460
             ++ SAT+ S  V+KL    +H P  V +  + S  DT+   ++  P             
Sbjct  223  TLLFSATMTS-KVEKLQRASLHQPVRVAVSSKFSTVDTLIQRYLFFPFK-----------  270

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
                     H                      K  Y V  + E   +  IIF RT  D  
Sbjct  271  ---------H----------------------KDTYLVYLVNELAGNSIIIFARTVNDTQ  299

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             L       G         FS + LHG      R   L +FK G    L+ TDVAARG+D
Sbjct  300  RLAILLRTLG---------FSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARGLD  350

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYN  640
            I  V  VIN  +P + + Y+HR+GR  RA R G +I+LV     + +  + ++ GK    
Sbjct  351  IPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQYDLEPFLRIEATIGKKMQE  410

Query  641  TRLKEDG  647
              + ++G
Sbjct  411  YEIDKEG  417


 Score = 66.6 bits (161),  Expect = 4e-10, Method: Compositional matrix adjust.
 Identities = 30/59 (51%), Positives = 44/59 (75%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F E+GV+ E+ +A E++ +  PT IQ E+IP++L   DV+  A+TGSGKT AF++PVIQ
Sbjct  48   FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQ  106


>sp|A5DDF4|PRP5_PICGU Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Meyerozyma guilliermondii (strain ATCC 6260 / 
CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 
GN=PRP5 PE=3 SV=2
Length=862

 Score = 124 bits (311),  Expect = 5e-28, Method: Compositional matrix adjust.
 Identities = 96/345 (28%), Positives = 165/345 (48%), Gaps = 54/345 (16%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  +I+ P+RELA Q    +  F + ++   L      GG     Q++ L+ G +I+V
Sbjct  339  DGPIGVILTPTRELALQIQKELVNFTQAVE---LSVCCCYGGSPIESQIADLKRGTEIIV  395

Query  345  GTPGRLDDLVST--GKL-NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL  401
            GTPGR+ DL++   G++ NL +  FLVLDEAD +   G+   +N++ +QI          
Sbjct  396  GTPGRVIDLLAANGGRVTNLRRTTFLVLDEADRMFDMGFEPQVNKVLSQI------RPDK  449

Query  402  QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK  461
            Q+++ SAT     ++ L+   +  P  +   G   V   +   VV ++   D   ++L  
Sbjct  450  QMVLFSATFPK-KLESLARSFLVDPIEIVAGGISVVAPEITQRVVLIDDSGDISQKKL--  506

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
                                     +A+  +  E++V    E    + +IF   +   D+
Sbjct  507  -------------------------QALLKIVDEFSV----EDPEGKILIFVDKQEAADD  537

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK-KGDVRFLICTDVAARGID  580
            L    +          +Q SC+ +HG +   +RK  +++F  K  +R LI T +AARG+D
Sbjct  538  LMVRLL---------NNQISCIVIHGGKDQVDRKHAIKQFSDKNGLRVLIATSIAARGLD  588

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            + G+  VIN   P   ++YVHR+GR GRA   G A++LV + +E+
Sbjct  589  VRGLNLVINYDAPSHMEDYVHRVGRTGRAGATGTAVTLVLSSQER  633


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 41/60 (68%), Gaps = 1/60 (2%)

Query  4    FSEMGVMPEIAQAVEE-MDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            ++++G+   I   +EE + +  P+ IQ++++P I+ G D++  A TGSGKT AF IP+I+
Sbjct  268  WAQLGLPSSIMTVLEEKLGYDTPSPIQSQALPAIMSGRDIIGVANTGSGKTLAFVIPLIR  327


>sp|Q0CBE1|DHH1_ASPTN ATP-dependent RNA helicase dhh1 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dhh1 
PE=3 SV=1
Length=509

 Score = 122 bits (305),  Expect = 6e-28, Method: Compositional matrix adjust.
 Identities = 102/357 (29%), Positives = 155/357 (43%), Gaps = 69/357 (19%)

Query  264  GYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLI  323
             +++ +    N + T+T+       ALI+ P+RELA QT +  K   K++    +  ++ 
Sbjct  100  AFVIPTLERINPKSTKTQ-------ALILVPTRELALQTSHVCKTLGKHLG---INVMVT  149

Query  324  IGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDF  383
             GG    D +  L + V I+VGTPGR+ DL S G  +LS+    V+DEAD LLS  ++  
Sbjct  150  TGGTGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPV  209

Query  384  INRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPD-TVH  442
            I ++ +  P      K  QV++ SAT     VK   +K M  P  ++L  E ++   T +
Sbjct  210  IEQLLSFHP------KDRQVMLFSATF-PLIVKSFKDKHMRNPYEINLMDELTLRGITQY  262

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
            +  V    K   L     K  I                                      
Sbjct  263  YAFVEEKQKVHCLNTLFSKLQI--------------------------------------  284

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
                +Q+IIFC +    + L +   + G         +SC   H       R +    F+
Sbjct  285  ----NQSIIFCNSTNRVELLAKKITELG---------YSCFYSHARMLQQHRNRVFHDFR  331

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
             G  R L+C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR   +GLAI+L+
Sbjct  332  NGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLI  388


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 0/61 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +  +  E+   + E  +  P+ IQ E+IP+ L G D+L  A+ G+GKT AF IP ++ 
Sbjct  49   FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER  108

Query  64   V  64
            +
Sbjct  109  I  109


>sp|Q4PFD9|PRP5_USTMA Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 
GN=PRP5 PE=3 SV=1
Length=1156

 Score = 124 bits (312),  Expect = 6e-28, Method: Compositional matrix adjust.
 Identities = 95/353 (27%), Positives = 165/353 (47%), Gaps = 63/353 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P  +I+ P+RELA Q    ++ F K +    LR   + GG    +Q++ ++   DIVV T
Sbjct  550  PVGIIMTPTRELAVQIYREMRPFIKALG---LRAACVYGGAPISEQIAEMKKTADIVVAT  606

Query  347  PGRLDDLVS--TGKL-NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            PGRL DL++  +G++ NL +V +LVLDEAD +   G+   + ++ N I          Q 
Sbjct  607  PGRLIDLLTANSGRVTNLYRVTYLVLDEADRMFDMGFEPQVMKILNNI------RPDRQT  660

Query  404  IVCSATLHSFDVKKLSEKIM-HFPTWVDLKGEDSVPDTVHHVVVPVNPKTD--RLWERLG  460
            ++ SAT     ++ L+ K++ + P  + + G   V   +  +V   +  T   RL E LG
Sbjct  661  VLFSATFPK-QMESLARKVLKNKPLEITVGGRSVVAAEIEQIVEVRSEDTKFHRLLEILG  719

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
            + + R  D                                       + +IF   +   D
Sbjct  720  ELYNREKDA--------------------------------------RTLIFVDRQEAAD  741

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
            +L +  I++G         +  + LHG +   +R + +  FK G+V  +  T VAARG+D
Sbjct  742  DLLKDLIRKG---------YVTMSLHGGKDQVDRDETISDFKAGNVPIVTATSVAARGLD  792

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
            +  +  VIN  +P+  ++YVHR GR GRA + G  I+ +  E+++    + ++
Sbjct  793  VKQLKLVINYDVPNHMEDYVHRAGRTGRAGQKGTCITFITPEQDRYARDIIAA  845


 Score = 46.6 bits (109),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 23/72 (32%), Positives = 43/72 (60%), Gaps = 4/72 (6%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  +S  G+       ++ + +  PT IQ++++P I+ G D++  A+TGSGKT AF +P 
Sbjct  475  LTKWSHCGLPASCLDVIKRLGYSAPTPIQSQAMPAIMSGRDIIGVAKTGSGKTMAFLLP-  533

Query  61   IQIVYETLKDQQ  72
               ++  +KDQ+
Sbjct  534  ---MFRHIKDQR  542


>sp|Q4WWD3|DHH1_ASPFU ATP-dependent RNA helicase dhh1 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=dhh1 PE=3 SV=1
Length=507

 Score = 122 bits (305),  Expect = 7e-28, Method: Compositional matrix adjust.
 Identities = 105/368 (29%), Positives = 164/368 (45%), Gaps = 73/368 (20%)

Query  258  LSKAPDG------YIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKK  311
            L++A +G      +++ +    N + T+T+       ALI+ P+RELA QT    K   K
Sbjct  88   LARAKNGTGKTAAFVIPTLERINPKSTKTQ-------ALILVPTRELALQTSQVCKTLGK  140

Query  312  YIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDE  371
            ++    +  ++  GG    D +  L + V I+VGTPGR+ DL S G  +LS+    V+DE
Sbjct  141  HLG---INVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDE  197

Query  372  ADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL  431
            AD LLS  ++  I ++ +  P      K  QV++ SAT     VK   +K M  P  ++L
Sbjct  198  ADKLLSPEFTPVIEQLLSFHP------KDRQVMLFSATF-PLIVKSFKDKHMRNPYEINL  250

Query  432  KGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
              E ++     +             E   K H          NT        ++S+    
Sbjct  251  MDELTLRGITQYYA---------FVEEKQKVHCL--------NT--------LFSKL---  282

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
                         +++Q+IIFC +    + L +   + G         +SC   H     
Sbjct  283  -------------QINQSIIFCNSTNRVELLAKKITELG---------YSCFYSHARMLQ  320

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
              R +    F+ G  R L+C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR   
Sbjct  321  QHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGH  380

Query  612  MGLAISLV  619
            +GLAI+L+
Sbjct  381  LGLAINLI  388


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +  +  E+   + E  +  P+ IQ E+IP+ L G D+L  A+ G+GKT AF IP ++
Sbjct  49   FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLE  107


>sp|Q09181|DHH1_SCHPO Putative ATP-dependent RNA helicase ste13 
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 
GN=ste13 PE=3 SV=1
Length=485

 Score = 121 bits (303),  Expect = 8e-28, Method: Compositional matrix adjust.
 Identities = 93/333 (28%), Positives = 148/333 (44%), Gaps = 60/333 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + LI+ P+RELA QT    K   K+++   ++ ++  GG   RD +  L + V IVVGTP
Sbjct  114  QTLILVPTRELALQTSQVCKTLGKHMN---VKVMVTTGGTTLRDDIIRLNDTVHIVVGTP  170

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ DL   G  + S+    V+DEAD LLS  ++  I ++ +  P      K  Q+ + S
Sbjct  171  GRVLDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFP------KNRQISLYS  224

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT     VK   +K ++ P  ++L  E ++     +                       D
Sbjct  225  ATF-PLIVKNFMDKHLNKPYEINLMDELTLRGVTQYYAF-------------------VD  264

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
            +                 S+ +  L   ++     + +++Q+IIFC +    + L +   
Sbjct  265  E-----------------SQKVHCLNTLFS-----KLQINQSIIFCNSTNRVELLAKKIT  302

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
            + G         +SC   H       R +    F+ G  R L+C+D+  RGIDI  V  V
Sbjct  303  ELG---------YSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVV  353

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            IN   P   + Y+HRIGR GR    GLAIS ++
Sbjct  354  INFDFPKNAETYLHRIGRSGRFGHRGLAISFIS  386


 Score = 49.3 bits (116),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 0/61 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +  +  E+   + E  +  P+ IQ ESIP+ L G D+L  A+ G+GKT AF IP ++ 
Sbjct  46   FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK  105

Query  64   V  64
            V
Sbjct  106  V  106


>sp|A4RIF1|DBP5_PYRO7 ATP-dependent RNA helicase DBP5 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=DBP5 PE=3 SV=2
Length=477

 Score = 121 bits (303),  Expect = 8e-28, Method: Compositional matrix adjust.
 Identities = 111/386 (29%), Positives = 176/386 (46%), Gaps = 84/386 (22%)

Query  258  LSKAPDGYIVKSQHSGNAQ--------VTQTKF-LPNAPKALIVEPSRELAEQTLNNIKQ  308
            LS  P   I +SQ SG  +        +++  F  PN P+AL + PSRELA Q  + I+ 
Sbjct  104  LSNPPRNMIAQSQ-SGTGKTGAFVVTILSRVDFNQPNQPQALALAPSRELARQIQSVIQS  162

Query  309  FKKYIDNPKLRELLIIGGVAARDQLSVLENGV--DIVVGTPGRLDDLVSTGKLNLSQVRF  366
              ++     L     I G  +R      E GV  ++VVGTPG + DL+   + ++SQ++ 
Sbjct  163  IGQFCTG--LVVDAAIPGAISR------ETGVKANVVVGTPGTVMDLIRRRQFDVSQLKL  214

Query  367  LVLDEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF  425
            LV+DEAD +L  QG  +   R+ N +P      K +Q ++ SAT                
Sbjct  215  LVVDEADNMLDQQGLGEQCVRVKNMLP------KTIQTLLFSATF---------------  253

Query  426  PTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW  485
                        PD V        P+ +++        +R  ++  K  ++   + P + 
Sbjct  254  ------------PDHVKSYAEKFAPQANQM-------KLRQQELTVKGISQMYMDCPSL-  293

Query  486  SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL  545
             E  ++L   Y +  I       ++IF +T+   D +++         +  GH+ S   L
Sbjct  294  KEKYEVLCKLYGLMTIGS-----SVIFVKTRESADEIQRRM-------EADGHKVSA--L  339

Query  546  HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP--------DEKQ  597
            HG  +  ER Q L+ F+ G  + LI T+V ARGID+  V  VIN  +P         + +
Sbjct  340  HGAFQGQERDQLLDDFRSGKSKVLITTNVLARGIDVSSVSMVINYDIPMKGPGDQSPDAE  399

Query  598  NYVHRIGRVGRAERMGLAISLVATEK  623
             Y+HRIGR GR  R+G++IS V   K
Sbjct  400  TYLHRIGRTGRFGRVGVSISFVHDRK  425


 Score = 38.1 bits (87),  Expect = 0.34, Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 38/61 (62%), Gaps = 2/61 (3%)

Query  6    EMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGG--DVLMAAETGSGKTGAFSIPVIQI  63
            E+G+   I   +  M++  P+ IQA ++PL+L     +++  +++G+GKTGAF + ++  
Sbjct  73   ELGLPQGIIDGLLAMNFKKPSKIQARALPLMLSNPPRNMIAQSQSGTGKTGAFVVTILSR  132

Query  64   V  64
            V
Sbjct  133  V  133


>sp|P0C2N8|DRS1_NEUCR ATP-dependent RNA helicase drs1 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=drh-11 PE=3 SV=1
Length=829

 Score = 123 bits (309),  Expect = 8e-28, Method: Compositional matrix adjust.
 Identities = 97/340 (29%), Positives = 152/340 (45%), Gaps = 57/340 (17%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + +I+ P+RELA Q      +   + D   ++  L +GG++ + Q + L    D+V+ TP
Sbjct  366  RVVILTPTRELAIQCHAVAVKLASHTD---IKFCLAVGGLSLKVQEAELRLRPDVVIATP  422

Query  348  GR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            GR +D + ++    +  +  LVLDEAD +L  G++D +N +   +P      K  Q ++ 
Sbjct  423  GRFIDHMRNSASFAVDTIEILVLDEADRMLEDGFADELNEILTTLP------KSRQTMLF  476

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT+ S  V +L    ++ P  +    +     T+    V + P                
Sbjct  477  SATMTS-SVDRLIRAGLNKPVRIMADSQKKTAGTLVQEFVRLRP----------------  519

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                 +++ R G                 Y +   K    ++ IIF R K     +   F
Sbjct  520  ----GRESKREG-----------------YLLHICKTIYTERVIIFFRQKKIAHKMRIIF  558

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
               G          SC  LHG     +R Q++E F+ G V FL+ TD+A+RG+DI GV  
Sbjct  559  GLFG---------LSCAELHGSMNQAQRIQSVEDFRDGKVNFLLATDLASRGLDIKGVDT  609

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
            VIN   P   + YVHR+GR  RA R G AI+L A    KV
Sbjct  610  VINYEAPQTPEIYVHRVGRTARAGRSGTAITLAAEPDRKV  649


 Score = 55.1 bits (131),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 26/62 (42%), Positives = 41/62 (66%), Gaps = 0/62 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M++F EM +   I + +  + +  PT IQA++IP+ L G DV+  A TGSGKT AF +P+
Sbjct  292  MSSFQEMSLSRPILRGLTSVGFTKPTPIQAKTIPISLMGKDVVGGAVTGSGKTAAFVVPI  351

Query  61   IQ  62
            ++
Sbjct  352  LE  353


>sp|Q6BL34|DBP10_DEBHA ATP-dependent RNA helicase DBP10 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 
/ JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP10 PE=3 
SV=2
Length=932

 Score = 124 bits (310),  Expect = 9e-28, Method: Compositional matrix adjust.
 Identities = 104/350 (30%), Positives = 156/350 (45%), Gaps = 33/350 (9%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +A+I+ PSRELA QT   +K+F K  D   LR +++IGG +  +Q S +    D++V TP
Sbjct  169  RAIILSPSRELASQTFKQVKEFSKGTD---LRSIVLIGGDSLEEQFSSMMTNPDVIVATP  225

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR   L    +L L  V ++V DEAD L   G+++ +N +   +P         Q ++ S
Sbjct  226  GRFLHLKVEMELELKTVEYIVFDEADRLFEMGFAEQLNELIAALPSSR------QSLLFS  279

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV--NPKTDRLWERLG-----  460
            ATL    +   ++  +  P  V L  E  + D +      +  N +   L   L      
Sbjct  280  ATLPR-SLIDFAKAGLTNPVLVRLDAETKISDQLQMAFFSIKNNEREASLLYVLQEVIKL  338

Query  461  -----KSHIRTDDVHAKDN-TRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
                 +   R  D+  +DN +   A       +     K E    A         IIF  
Sbjct  339  PLASPEEVKRYSDMEKRDNGSEDEAEDENNNKKKRFKFKKERLPPANMLPSKHSTIIFVP  398

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
            TK   + +       G         +    ++G    H RKQ L +F+ G    L+ TDV
Sbjct  399  TKHHVEYVTTLLKDAG---------YLVSYIYGTLDQHARKQQLYQFRIGMTSLLVVTDV  449

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            AARGIDI  +  V+N TLP   + ++HR+GR  RA   G A S+V  EKE
Sbjct  450  AARGIDIPILANVVNYTLPGSSKIFIHRVGRTARAGNSGWAYSIV-NEKE  498


 Score = 48.1 bits (113),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 20/38 (53%), Positives = 29/38 (76%), Gaps = 0/38 (0%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            PT IQ ++IPLI+   DV+  A TGSGKT AF++P+++
Sbjct  120  PTPIQRKTIPLIMENRDVVGMARTGSGKTAAFTLPLVE  157


>sp|Q2H1Q8|RRP3_CHAGB ATP-dependent rRNA helicase RRP3 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / 
NBRC 6347 / NRRL 1970) OX=306901 GN=RRP3 PE=3 SV=1
Length=493

 Score = 121 bits (303),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 152/359 (42%), Gaps = 59/359 (16%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            AL++ P+RELA Q   + +     I    LR  LI+GG+    Q   L     +VV TPG
Sbjct  136  ALVLAPTRELAAQIAQSFEALGSLIS---LRCALILGGLDMVQQAIALGKKPHVVVATPG  192

Query  349  RL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            RL D L  T   +L  +R+LV+DEAD LL   +   ++++   +P      +  +  + S
Sbjct  193  RLLDHLEKTKGFSLRNLRYLVMDEADRLLDMDFGPILDKILKFLP------RERRTFLFS  246

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+ S  V+ L    +  P  V      S+  + +  V             L ++++   
Sbjct  247  ATMSS-KVESLQRACLRDPLKV------SISSSKYQTV-----------STLVQNYVFIP  288

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
              H                      K  Y +    E      IIF RT I+   +     
Sbjct  289  HTH----------------------KDTYLIYLCNEFAGQTIIIFTRTVIETQRIAILLR  326

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
              G G          + LHG      R   L +F+ G    L+ TDVAARG+DI  V  V
Sbjct  327  TLGMG---------AIPLHGGLSQSARLGALNKFRAGSRDILVATDVAARGLDIPNVDCV  377

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKED  646
            +N+ LP + + YVHR+GR  RA R G AIS V     ++W  + ++ G       L++D
Sbjct  378  LNLDLPGDSKTYVHRVGRTARAGRSGHAISFVTQYDLELWLRIEAALGTKLTEYSLEKD  436


 Score = 65.5 bits (158),  Expect = 9e-10, Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 44/63 (70%), Gaps = 0/63 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F ++G++  +  A +E+ W  PT IQ ESIPL L   D++  AETGSGKTGAF++P++Q 
Sbjct  67   FQDLGIVDSLCDACKELGWKKPTPIQQESIPLALQDRDIIGLAETGSGKTGAFALPILQA  126

Query  64   VYE  66
            + +
Sbjct  127  LLD  129


>sp|Q6H7S2|RH8_ORYSJ DEAD-box ATP-dependent RNA helicase 8 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os02g0641800 PE=2 SV=2
Length=508

 Score = 121 bits (303),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 93/346 (27%), Positives = 154/346 (45%), Gaps = 60/346 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            NA + +I+ P+RELA QT    K+  K++   K++ ++  GG + +D +  L   V ++V
Sbjct  201  NAIQVVILVPTRELALQTSQVCKELGKHL---KIQVMVTTGGTSLKDDIIRLYQPVHLLV  257

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GTPGR+ DL   G   L     L++DEAD LLS  +   + ++   +P         Q++
Sbjct  258  GTPGRILDLTKKGICILKDCSMLIMDEADKLLSPEFQPSVEQLIRYLPASR------QIL  311

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT     VK+  +K +  P  ++L  E ++                 + ER      
Sbjct  312  MFSATF-PVTVKEFKDKYLPKPYVINLMDELTLKGITQFYAF--------VEER------  356

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                VH  +          ++S+                 +++Q+IIFC +    + L +
Sbjct  357  --QKVHCLNT---------LFSKL----------------QINQSIIFCNSVNRVELLAK  389

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
               + G         +SC  +H       R +    F+ G  R L+CTD+  RGIDI  V
Sbjct  390  KITELG---------YSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAV  440

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
              VIN   P   + Y+HR+GR GR   +GLA++L+  E     Y +
Sbjct  441  NVVINFDFPKTAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRI  486


 Score = 49.7 bits (117),  Expect = 9e-05, Method: Compositional matrix adjust.
 Identities = 23/59 (39%), Positives = 35/59 (59%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +  +  E+   + E  +  P+ IQ ESIP+ L G D+L  A+ G+GKT AF IP ++
Sbjct  136  FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE  194


>sp|A6QUM7|DBP10_AJECN ATP-dependent RNA helicase DBP10 OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=DBP10 
PE=3 SV=1
Length=900

 Score = 123 bits (309),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 98/336 (29%), Positives = 155/336 (46%), Gaps = 29/336 (9%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ PSRELA QTL  +K+  +  D   L+ +L++GG +  +Q   + +  DI++ TP
Sbjct  158  RALILSPSRELALQTLKVVKELGRGTD---LKSVLLVGGDSLEEQFEYMASNPDIIIATP  214

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR   L     L+LS +R++V DEAD L   G++  +  + + +P         Q ++ S
Sbjct  215  GRFLHLKVEMSLDLSSIRYVVFDEADRLFEMGFATQLTEILHGLPSSR------QTLLFS  268

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV--VVPVNPKTDRLWERLGKS-HI  464
            ATL    V+  +   +  P  + L  E  +   + +    V  + K   L   L +   I
Sbjct  269  ATLPKSLVE-FARAGLQEPILIRLDAESKISPDLQNAFFTVKSSEKEGALLHVLHEVIKI  327

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA-IIFCRTKIDCDNLE  523
             T +  A    +      E    + K  + E    + KE   + + IIF  TK   D L 
Sbjct  328  PTGETEALKRAK------EEVKHSKKRKRSEVTSNSHKESPTEHSTIIFTATKHHVDYLT  381

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
                  G         F+    +G      RK  ++ F+ G    L+ TDVAARGIDI  
Sbjct  382  SILRTSG---------FAVSYAYGSLDQTARKIEVQNFRDGITHILVVTDVAARGIDIPI  432

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +  VIN   P + + +VHR+GR  RA + G + SL+
Sbjct  433  LSNVINYDFPSQPKIFVHRVGRTARAGKTGWSYSLI  468


 Score = 53.9 bits (128),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  +G+   + +A+    + +PT IQ ++IPL+L   DV+  A TGSGKT AF IP+I+
Sbjct  88   FQSLGLNAALLKAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIPMIE  146


>sp|Q8GY84|RH10_ARATH DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis 
thaliana OX=3702 GN=RH10 PE=1 SV=2
Length=456

 Score = 120 bits (301),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 150/341 (44%), Gaps = 61/341 (18%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            A ++ P+RELA Q     +QF+    +  LR  +++GG+    Q   L     ++V TPG
Sbjct  92   ACVLSPTRELAIQI---AEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVATPG  148

Query  349  RL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            RL D +  T   +L  +++LVLDEAD LL++ +   +N++  +IP         +  + S
Sbjct  149  RLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPL------ERKTFLFS  202

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+    V+KL    +  P  ++   + S  DT+                   K   R  
Sbjct  203  ATMTK-KVRKLQRACLRNPVKIEAASKYSTVDTL-------------------KQQYRFV  242

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                KD                      Y V  + E     ++IF RT   CD      +
Sbjct  243  AAKYKDC---------------------YLVYILSEMPESTSMIFTRT---CDGTRFLAL  278

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
                    +   F  + + G     +R   L +FK G+   L+CTDVA+RG+DI  V  V
Sbjct  279  VL------RSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVASRGLDIPSVDVV  332

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            IN  +P   ++Y+HR+GR  RA R G+ ISLV  + E  WY
Sbjct  333  INYDIPTNSKDYIHRVGRTARAGRSGVGISLV-NQYELEWY  372


 Score = 76.3 bits (186),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 53/75 (71%), Gaps = 1/75 (1%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F+E+GV  E+ +A E + W  P+ IQAE++P  L G DV+  A+TGSGKTGAF+IP++Q 
Sbjct  11  FAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQA  70

Query  64  VYETLKDQQEGKKGK  78
           + E + D  E KKG+
Sbjct  71  LLEYVYD-SEPKKGR  84


>sp|Q4R4Y9|IF4A2_MACFA Eukaryotic initiation factor 4A-II OS=Macaca 
fascicularis OX=9541 GN=EIF4A2 PE=2 SV=1
Length=408

 Score = 119 bits (299),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 108/359 (30%), Positives = 167/359 (47%), Gaps = 64/359 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGT  346
            +AL++ P+RELA+Q    I     Y+          IGG   R+++  L+     IVVGT
Sbjct  104  QALVLAPTRELAQQIQKVILALGDYMGATCHA---CIGGTNVRNEMQKLQAEAPHIVVGT  160

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGR+ D+++   L+   ++  VLDEADG+LS+G+ D I  +  ++         +QV++ 
Sbjct  161  PGRVFDMLNRRYLSPKWIKMFVLDEADGMLSRGFKDQIYEIFQKL------NTSIQVVLL  214

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT+ + DV ++++K M  P  + +K E+   + +    + V        ER        
Sbjct  215  SATMPT-DVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINV--------ER--------  257

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                            E W   +  L   Y    I      QA+IF  T+   D L +  
Sbjct  258  ----------------EEWK--LDTLCDLYETLTIT-----QAVIFLNTRRKVDWLTEKM  294

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                         F+   LHGD    ER   +  F+ G  R LI TD+ ARGID+  V  
Sbjct  295  ---------HARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSL  345

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            VIN  LP  ++NY+HRIGR GR  R G+AI+ V  E +++   +     +  YNT ++E
Sbjct  346  VINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDI-----ETFYNTTVEE  399


 Score = 37.0 bits (84),  Expect = 0.66, Method: Compositional matrix adjust.
 Identities = 19/69 (28%), Positives = 37/69 (54%), Gaps = 0/69 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +M +   + + +    +  P+ IQ  +I   + G DV+  A++G+GKT  F+I ++Q 
Sbjct  36   FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ  95

Query  64   VYETLKDQQ  72
            +    K+ Q
Sbjct  96   LEIEFKETQ  104


>sp|A1CTZ6|DBP10_ASPCL ATP-dependent RNA helicase dbp10 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / 
NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp10 PE=3 
SV=1
Length=935

 Score = 123 bits (309),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 159/353 (45%), Gaps = 57/353 (16%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + LI+ PSRELA QTL  +K+  K  D   L+ +L++GG +  +Q +++    DIV+ TP
Sbjct  161  RGLILSPSRELALQTLKVVKELGKGTD---LKCVLLVGGDSLEEQFTMMAGNPDIVIATP  217

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR   L     L+L  +R++V DEAD L   G++  +  + + +P         Q ++ S
Sbjct  218  GRFLHLKVEMNLDLYSIRYVVFDEADRLFEMGFAAQLTEILHGLP------PNRQTLLFS  271

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSV-PD-------------------TVHHVV-V  446
            ATL    V+  +   +  PT + L  E  + PD                    +H V+ +
Sbjct  272  ATLPKSLVE-FARAGLQEPTLIRLDTESKISPDLQNAFFSIKSSEKEGALLYILHEVIKM  330

Query  447  PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM  506
            P  P T+   +R G      +D  A+ +        EM          E AV   +    
Sbjct  331  PTGP-TEMAQQRQG------EDASARFSKANKRKRAEM----------EKAVNTKESPTQ  373

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
               I+F  TK   D L     + G         F+   ++G      RK  ++ F+ G  
Sbjct  374  HSTIVFAATKHHVDYLYSLLHEAG---------FAVSYVYGALDQTARKIQVQNFRSGLS  424

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
              L+ TDVAARGIDI  +  VIN   P + + ++HR+GR  RA R G + SLV
Sbjct  425  NILVVTDVAARGIDIPILANVINYDFPSQPKIFIHRVGRTARAGRKGWSYSLV  477


 Score = 54.3 bits (129),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  MG+   + +A+    + +PT IQ ++IP+I+   DV+  A TGSGKT AF IP+I+
Sbjct  91   FQAMGLSANLLKAIARKGFSVPTPIQRKTIPVIMDDQDVVGMARTGSGKTAAFVIPMIE  149


>sp|Q4HY71|DBP5_GIBZE ATP-dependent RNA helicase DBP5 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=DBP5 PE=3 SV=1
Length=488

 Score = 120 bits (302),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 110/383 (29%), Positives = 167/383 (44%), Gaps = 78/383 (20%)

Query  258  LSKAPDGYIVKSQH-SGNAQVTQTKFL-------PNAPKALIVEPSRELAEQTLNNIKQF  309
            LS  P   + +SQ  +G      T  L       P+ P+AL + PSRELA Q    I   
Sbjct  110  LSDPPRNMLAQSQSGTGKTAAFVTAILSRVDFSKPDQPQALALAPSRELARQIEGVINAI  169

Query  310  KKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVL  369
             ++++N K+     I GV  R +         ++VGTPG + D++   +L++SQ+R LVL
Sbjct  170  GRFVENKKVAA--AIPGVLPRGE----PVRASVIVGTPGTVMDIIRRRQLDISQLRVLVL  223

Query  370  DEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTW  428
            DEAD +L  QG  D   ++ N +P      K +QV++ SAT                   
Sbjct  224  DEADNMLDQQGLGDQCLKVKNMLP------KEIQVLLFSATF------------------  259

Query  429  VDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEA  488
                     P+ V        P    L  +L +S +    +       P  N        
Sbjct  260  ---------PENVMKYAGKFAPNAHSL--KLQRSELTVKGISQMFIDCPDDNM------K  302

Query  489  IKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGD  548
              IL   Y +  I      Q++IF +T+     +E+  +         GH+ S   LH  
Sbjct  303  YDILCKLYGLMTI-----GQSVIFVKTRDSASEIERRMVAD-------GHKVS--ALHAA  348

Query  549  RKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP--------DEKQNYV  600
                ER   L +F++G+ + LI T+V ARGID+  V  VIN  +P         + + Y+
Sbjct  349  FDGAERDNLLTKFRQGENKVLITTNVLARGIDVSSVSMVINYDIPMKGRGDTEPDAETYL  408

Query  601  HRIGRVGRAERMGLAISLVATEK  623
            HRIGR GR  R+G++IS V  +K
Sbjct  409  HRIGRTGRFGRVGVSISFVYDKK  431


>sp|Q5T1V6|DDX59_HUMAN Probable ATP-dependent RNA helicase DDX59 
OS=Homo sapiens OX=9606 GN=DDX59 PE=1 SV=1
Length=619

 Score = 122 bits (305),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 89/357 (25%), Positives = 165/357 (46%), Gaps = 61/357 (17%)

Query  277  VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL  336
            + +  F    P ALI+ P+RELA Q     K+    +  P+++ +L++GG+    QL  L
Sbjct  262  IMRALFESKTPSALILTPTRELAIQIERQAKELMSGL--PRMKTVLLVGGLPLPPQLYRL  319

Query  337  ENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTS  396
            +  V +++ TPGRL D++    + L  V+ +V+DEAD +L  G+   +  +   IP    
Sbjct  320  QQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPN---  376

Query  397  DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVP-DTVHHVVVPVN--PKTD  453
                 Q I+ SAT+ +  +++L+ +++H P  + + GE ++P   V  +++ V    K  
Sbjct  377  ---DCQTILVSATIPT-SIEQLASQLLHNPVRI-ITGEKNLPCANVRQIILWVEDPAKKK  431

Query  454  RLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFC  513
            +L+E L    +    V    + + GA+   + SEA++ + G                   
Sbjct  432  KLFEILNDKKLFKPPVLVFVDCKLGAD---LLSEAVQKITG-------------------  469

Query  514  RTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTD  573
                                         + +H ++   ERK  L+   +GD   ++ T 
Sbjct  470  --------------------------LKSISIHSEKSQIERKNILKGLLEGDYEVVVSTG  503

Query  574  VAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
            V  RG+D+  V  V+N  +P     YVH+IGRVGR  + G AI+ +    +++++ +
Sbjct  504  VLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFWDI  560


 Score = 47.8 bits (112),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 37/53 (70%), Gaps = 1/53 (2%)

Query  10   MPEIA-QAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            +PE+    +++  + +PT IQ + IP+ L G D+L +A+TGSGKT AF +PVI
Sbjct  210  LPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVI  262


>sp|Q4I830|DRS1_GIBZE ATP-dependent RNA helicase DRS1 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=DRS1 PE=3 SV=1
Length=796

 Score = 122 bits (307),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 94/340 (28%), Positives = 153/340 (45%), Gaps = 57/340 (17%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + +++ P+RELA Q      +   + D   ++  L +GG++ + Q   L+   D+++ TP
Sbjct  329  RVVVLLPTRELAIQCHAVATKLAAFTD---IKFTLAVGGLSLKAQELELKLRPDVIIATP  385

Query  348  GR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            GR +D + ++   ++  V  LVLDEAD +L  G++D +N +   +P      K  Q ++ 
Sbjct  386  GRFIDHMRNSASFSVDTVEILVLDEADRMLEDGFADELNEILTTLP------KSRQTMLF  439

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT+ S  V +L +  ++ P  V +  +     T+    V + P                
Sbjct  440  SATMTS-SVDRLIQIGLNRPARVMVNSQKKTVTTLVQEFVRLRP----------------  482

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                 +++ R G                 Y     K    ++ IIF R K D       F
Sbjct  483  ----GREDKRMG-----------------YLAHVCKNLYKERVIIFFRQKKDAHRARIIF  521

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
               G          SC  LHG     +R  ++E F+ G V +L+ TD+A+RG+DI GV  
Sbjct  522  GLLG---------LSCAELHGSMNQTQRISSVEDFRDGKVAYLLATDLASRGLDIKGVDT  572

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
            VIN   P     YVHR+GR  RA R G+A+++ A    KV
Sbjct  573  VINYEAPQSLDIYVHRVGRTARAGRKGVALTIAAESDRKV  612


 Score = 57.0 bits (136),  Expect = 5e-07, Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 41/61 (67%), Gaps = 0/61 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            ++F  M +   I + +  + +  PT IQA+SIP+ L G DV+  AETGSGKTGAF +P++
Sbjct  256  SSFQTMSLSRPIMRGLASVGFTKPTPIQAKSIPIALMGKDVVGGAETGSGKTGAFILPIL  315

Query  62   Q  62
            +
Sbjct  316  E  316


>sp|Q75BL8|IF4A_EREGS ATP-dependent RNA helicase eIF4A OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=TIF1 PE=3 SV=1
Length=396

 Score = 119 bits (297),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 97/335 (29%), Positives = 153/335 (46%), Gaps = 58/335 (17%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            AP+ALI+ P+RELA Q    +     ++D   ++    IGG   R+    L  G  IVVG
Sbjct  90   APQALILAPTRELALQIQKVVMALALHMD---VKVHACIGGTDPREDAEALRAGAQIVVG  146

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGR+ D++         ++  +LDEAD +LS G+ + I ++   +P  T      QV++
Sbjct  147  TPGRVFDMIERRNFKTDHIKMFILDEADEMLSSGFKEQIYKIFTMLPPTT------QVVL  200

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT+   +V  +++K M+ P  + +K +    + +    + V                 
Sbjct  201  LSATMPK-EVLDVTDKFMNKPVRILVKKDALTLEGIQQYYINVE----------------  243

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                           S E   + +  L    +V         QA+IFC T+   + L + 
Sbjct  244  ---------------SEEYKYDCLSDLYDSISVT--------QAVIFCNTRRKVEELTKR  280

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
                          F+   ++ D    +R   ++ F+ G  R LI TD+ ARGID+  V 
Sbjct  281  LTDDS---------FTVSAIYSDLPQAQRDTIMKEFRTGSSRILISTDLLARGIDVQQVS  331

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
             VIN  LP+ K+NY+HRIGR GR  R G+AI+LV 
Sbjct  332  LVINYDLPNNKENYIHRIGRGGRFGRKGVAINLVT  366


 Score = 44.3 bits (103),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 24/69 (35%), Positives = 41/69 (59%), Gaps = 0/69 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F E+ +   + + +    ++ P+ IQ  +I  I+ G DVL  A++G+GKTG FSI  +Q 
Sbjct  24  FDELKLKEVLLRGIYGYGFVDPSAIQQRAILPIIEGHDVLAQAQSGTGKTGTFSIAALQR  83

Query  64  VYETLKDQQ  72
           + E++K  Q
Sbjct  84  IDESIKAPQ  92


>sp|Q0CZN5|DRS1_ASPTN ATP-dependent RNA helicase drs1 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=drs1 
PE=3 SV=1
Length=821

 Score = 122 bits (307),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 98/353 (28%), Positives = 158/353 (45%), Gaps = 58/353 (16%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +  I+ P+RELA Q  N   +   Y D   +    ++GG + R+Q ++L+   D+++ TP
Sbjct  377  RVAILMPTRELAVQCYNVATKLATYTD---ITFCQLVGGFSLREQENILKKRPDVIIATP  433

Query  348  GR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            GR +D + ++    +  +  LVLDEAD +L  G++D +N +   IP      K  Q ++ 
Sbjct  434  GRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIP------KSRQTMLF  487

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT+    V KL    ++ P  + +  + +   T+    V + P   R  +RLG      
Sbjct  488  SATMTDT-VDKLIRVGLNRPVRLMVDSKKNTSLTLVQEFVRLRPG--REDKRLG------  538

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                                         Y +   KE    + I+F R K +   +   F
Sbjct  539  -----------------------------YLLYLCKEIYTGRVIVFFRQKREAHRVRIVF  569

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
               G              LHG     +R +++E F+ G V FL+ TD+A+RG+DI GV  
Sbjct  570  GLLG---------LKAAELHGSMSQEQRIKSVENFRDGKVAFLLATDLASRGLDIKGVET  620

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW-YHVCSSRGKGC  638
            VIN   P   + Y+HR+GR  RA R G A ++ A    KV    V +S+ +G 
Sbjct  621  VINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKASKAQGA  673


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 22/60 (37%), Positives = 39/60 (65%), Gaps = 0/60 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F E  +   I + +  +++  PT IQ ++IP+ L G D++ +A TGSGKT AF +P+++
Sbjct  305  SFQEFNLSRPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILE  364


>sp|Q2GQ93|DHH1_CHAGB ATP-dependent RNA helicase DHH1 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=DHH1 PE=3 SV=1
Length=512

 Score = 120 bits (302),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 99/367 (27%), Positives = 162/367 (44%), Gaps = 67/367 (18%)

Query  264  GYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLI  323
             +++ +    N +V++ +        LI+ P+RELA QT    K   K++    +  ++ 
Sbjct  64   AFVIPALEKINPKVSKIQ-------CLILVPTRELAMQTSQVCKTLGKHLG---INVMVT  113

Query  324  IGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDF  383
             GG   RD +  L++ V IVVGTPGR+ DL      +LS+    ++DEAD LLS  ++  
Sbjct  114  TGGTGLRDDIVRLQDPVHIVVGTPGRILDLAGKQVADLSECPMFIMDEADKLLSIEFTPV  173

Query  384  INRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHH  443
            I ++    P      K  QV++ SAT     VK  S+K M  P  ++L            
Sbjct  174  IEQLLRFHP------KDRQVMLFSATF-PISVKDFSDKNMTSPYEINL------------  214

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
                                   D++  +  T+  A   E   + +  L   ++     +
Sbjct  215  ----------------------MDELTLRGITQYYAYVEE--KQKVHCLNTLFS-----K  245

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
             +++Q+IIFC +    + L +   + G         +SC   H       R +    F+ 
Sbjct  246  LQINQSIIFCNSTNRVELLAKKITELG---------YSCFYSHAKMAQQARNRVFHDFRN  296

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
            G  R L+C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR   +GLAI+L+  + 
Sbjct  297  GVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLINWDD  356

Query  624  EKVWYHV  630
                Y++
Sbjct  357  RFNLYNI  363


 Score = 48.1 bits (113),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 23/59 (39%), Positives = 36/59 (61%), Gaps = 0/59 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           F + G+  ++   + E  +  P+ IQ ESIP+ L G D+L  A+ G+GKT AF IP ++
Sbjct  13  FEDFGLKRDLLMGIFEAGFEKPSPIQEESIPVALVGRDILARAKNGTGKTAAFVIPALE  71


>sp|Q1E2B2|DRS1_COCIM ATP-dependent RNA helicase DRS1 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DRS1 PE=3 SV=1
Length=840

 Score = 122 bits (307),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 107/383 (28%), Positives = 171/383 (45%), Gaps = 60/383 (16%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +  I+ P+RELA Q  N   +   Y D   +    ++GG + R+Q +VL+   D+++ TP
Sbjct  392  RVAILMPTRELAVQCYNVATKLATYTD---ITFCQLVGGFSLREQENVLKQRPDVIIATP  448

Query  348  GR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            GR +D + ++    +  +  LVLDEAD +L  G++D +N + N IP      K  Q ++ 
Sbjct  449  GRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILNTIP------KSRQTMLF  502

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT+ +  V KL    ++ P  +       + D+  H V  +  +  RL           
Sbjct  503  SATM-TDSVDKLIRVGLNRPVRL-------MVDSKKHTVGTLVQEFVRL-----------  543

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                     RPG     M           Y V        ++ I+F R K +       F
Sbjct  544  ---------RPGREGKRMG----------YLVLLCNTIYTNRVIVFFRQKKEAHRARIIF  584

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
               G              LHG     +R   +E F+ G V FL+ TD+A+RG+DI GV  
Sbjct  585  GLLG---------LKAAELHGSMSQEQRINAVEAFRDGKVPFLLATDLASRGLDIKGVES  635

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW-YHVCSSRGKGC-YNTRLK  644
            VIN   P   + Y+HR+GR  RA R G A ++ A    KV    V + R +G    +R+ 
Sbjct  636  VINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKAGRAQGAKIVSRVV  695

Query  645  EDGGCTIWYNEM-QLLSEIEEHL  666
            +      W +++ ++ +EIE+ L
Sbjct  696  DPAVADEWASKVEEMQAEIEDIL  718


 Score = 43.5 bits (101),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 24/69 (35%), Positives = 40/69 (58%), Gaps = 1/69 (1%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F    +   I + +  + +  PT IQ ++IP+ L G D++  A TGSGKT AF IP++
Sbjct  319  STFQNFNLSRPILRGLAAVGFSAPTPIQRKAIPVGLLGKDLVGGAVTGSGKTAAFIIPIL  378

Query  62   Q-IVYETLK  69
            + ++Y   K
Sbjct  379  ERLLYRPRK  387


>sp|Q59W52|PRP28_CANAL Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) 
OX=237561 GN=PRP28 PE=3 SV=2
Length=581

 Score = 121 bits (304),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 99/356 (28%), Positives = 174/356 (49%), Gaps = 56/356 (16%)

Query  283  LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL-ENGVD  341
            + N P  LI+ P+RELA Q     ++F K +     + L IIGG   +D ++ + + GV 
Sbjct  243  ISNEPVGLILAPTRELALQITKEAEKFCKKLG---YQVLPIIGGHHYQDTINKIDQTGVH  299

Query  342  IVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP---QVTS--  396
            ++V TPGRL D +    ++LS+   LV+DEAD ++  G+   +N++ +++P   Q++S  
Sbjct  300  LIVATPGRLVDSIERKIVDLSKCYCLVMDEADRMIDMGFEKDLNKVLDKLPTEKQLSSTI  359

Query  397  DGK-----RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPK  451
            DG+     +   ++ +AT+ S  V+KL++K +  P ++ + G     D +          
Sbjct  360  DGRIFHLEKRSTMMFTATI-SPTVEKLTKKYLIDPGYLYIGGAGEALDNISQS-------  411

Query  452  TDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAII  511
                +E L  +                      +++ IKI++  + V    E+ +   II
Sbjct  412  ----FEFLSSA----------------TTEATKFNKLIKIIRSHWRV---TENPL--III  446

Query  512  FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLIC  571
            F   K  CD+L Q             +  + V +HG +    R+Q +  F+  +   LI 
Sbjct  447  FANFKHVCDSLSQEL---------SSNDINNVVIHGSKSQDMREQAITNFRNHESEVLIA  497

Query  572  TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
            TDVAARGIDI  V  VIN  +  +   Y+HRIGR GRA  +G + + ++ +  +++
Sbjct  498  TDVAARGIDIPNVTLVINYQMVKKFDEYIHRIGRTGRAGNLGESFTFISDQDTEIF  553


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (61%), Gaps = 0/61 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            ++E  +  ++   + ++ +  PT +Q  SIPL L   DV+  AETGSGKT AF IPV+  
Sbjct  170  WNEGSINDKLVSIISQLGYEEPTSVQRASIPLALKKRDVVGVAETGSGKTLAFLIPVLNY  229

Query  64   V  64
            +
Sbjct  230  I  230


>sp|A6RC50|DBP5_AJECN ATP-dependent RNA helicase DBP5 OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=DBP5 PE=3 
SV=1
Length=497

 Score = 120 bits (301),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 162/351 (46%), Gaps = 73/351 (21%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            AP+AL++ PSRELA Q +  I+    Y+D  KL+    +   + R+Q    +    +VVG
Sbjct  162  APQALVLAPSRELARQIVGVIQVMGSYVD--KLKVATAVPMESNRNQ----KVEAPVVVG  215

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            TPG + DL+     N   ++ +VLDEAD +L  QG  D   R+   +P      K +QV+
Sbjct  216  TPGTVMDLIRKRLFNPQHLKVIVLDEADNMLDQQGLGDQCIRVKGLLP------KNIQVV  269

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT     V + + K       + LK E+   + +  + +  +               
Sbjct  270  LFSATFPDH-VVRYANKFAPNANQITLKHEELTVEGIKQLYLDCD---------------  313

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
               D H  D                 IL   Y +  I       +IIF +T+     +E+
Sbjct  314  --SDEHKFD-----------------ILVKFYGLLTI-----GSSIIFVKTRASAVEIER  349

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
              + +G          + V L G  +  +R + +++F++GD + LI T+V ARGID+  V
Sbjct  350  RMVAEG---------HTVVSLTGGVEGQKRDEIIDKFRQGDAKVLITTNVLARGIDVQTV  400

Query  585  PYVINVTLPD-----------EKQNYVHRIGRVGRAERMGLAISLVATEKE  624
              VIN  +P+           + Q Y+HRIGR GR  R+G+A+S VA+++E
Sbjct  401  SMVINYDIPELHAPKATKRIADAQTYLHRIGRTGRFGRVGVAVSFVASKEE  451


 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 40/63 (63%), Gaps = 2/63 (3%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            + +F E+G+ P I Q +  M +  P+ IQ +++PL+L     +++  +++G+GKT AF +
Sbjct  88   IKSFEELGLHPSILQGLHSMSFRRPSKIQEKALPLLLNNPPANMIGQSQSGTGKTAAFVL  147

Query  59   PVI  61
             ++
Sbjct  148  NIL  150


>sp|P23128|DDX6_DROME ATP-dependent RNA helicase me31b OS=Drosophila 
melanogaster OX=7227 GN=me31B PE=1 SV=3
Length=459

 Score = 120 bits (300),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 90/335 (27%), Positives = 153/335 (46%), Gaps = 60/335 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+RELA QT     +  K++D   +R ++  GG   +D +  +   V +++ TP
Sbjct  128  QALVMVPTRELALQTSQICIELAKHLD---IRVMVTTGGTILKDDILRIYQKVQLIIATP  184

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ DL+     ++S  R LVLDEAD LLS  +   ++ +  ++P      K  Q+++ S
Sbjct  185  GRILDLMDKKVADMSHCRILVLDEADKLLSLDFQGMLDHVILKLP------KDPQILLFS  238

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT     VK   EK +  P  ++L  E ++     +           + ER         
Sbjct  239  ATF-PLTVKNFMEKHLREPYEINLMEELTLKGVTQYYAF--------VQER--------Q  281

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
             VH  +          ++S+                 +++Q+IIFC +    + L +   
Sbjct  282  KVHCLNT---------LFSKL----------------QINQSIIFCNSTQRVELLAKKIT  316

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
            + G         + C  +H       R +    F++G  R L+C+D+  RGID+  V  V
Sbjct  317  ELG---------YCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLFTRGIDVQAVNVV  367

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            IN   P   + Y+HRIGR GR   +G+AI+L+  E
Sbjct  368  INFDFPRMAETYLHRIGRSGRFGHLGIAINLITYE  402


 Score = 54.3 bits (129),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F E  +  E+   + E  W  P+ IQ  +IP+ L G DVL  A+ G+GKTGA+ IPV++
Sbjct  60   FEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLE  118


>sp|Q6CT49|PRP28_KLULA Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 
GN=PRP28 PE=3 SV=1
Length=539

 Score = 121 bits (303),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 158/340 (46%), Gaps = 55/340 (16%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P AL++ P+RELA+Q  +  +   K    P    + I+GG +  +  + L +G DI+V
Sbjct  213  DGPLALVLAPTRELAQQIQHEGQSITKLWKRP-CNIVSIVGGHSLEEISANLRDGCDILV  271

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D + +  L L QV  LVLDEAD ++  G+ D +  +  +   +++     Q +
Sbjct  272  ATPGRLLDCLDSHLLFLKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNR----QTM  327

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + +AT  S  ++K++   +  P++V + GE+S P  +  +V  V  + ++L         
Sbjct  328  MFTATF-SPTIEKVANGYLKKPSYVTVGGEESKP-KIKQIVRYVPDEEEKL---------  376

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                +  KD   P   +P                           IIF   K   D L  
Sbjct  377  ---KILVKDFL-PNYKAP--------------------------IIIFINYKRTADWLFD  406

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
                       +  +F    LHG +   +R+ +L   + G V  LI TDVA RGIDI  V
Sbjct  407  KL---------REARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNV  457

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
              V+N+  P    ++VHR+GR GRA + G A++ +  E++
Sbjct  458  SLVVNLQFPKSFDSFVHRVGRTGRAGKTGTALTFLTEEED  497


 Score = 41.2 bits (95),  Expect = 0.037, Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (59%), Gaps = 2/58 (3%)

Query  6    EMGVMPE--IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            E+ ++PE  +     ++ +  PT IQ  +IP ++   D +  A TGSGKT AF +P++
Sbjct  140  ELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPIL  197


>sp|P44701|SRMB_HAEIN ATP-dependent RNA helicase SrmB OS=Haemophilus 
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) 
OX=71421 GN=srmB PE=3 SV=1
Length=439

 Score = 119 bits (299),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 94/337 (28%), Positives = 145/337 (43%), Gaps = 59/337 (18%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P  P+ L++ P+RELA Q     ++  ++     L    I GGVA ++   V     D+V
Sbjct  74   PGPPRILVLTPTRELAMQVAEQAEELAQFT---HLNIATITGGVAYQNHGDVFNTNQDLV  130

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK-RLQ  402
            V TPGRL   +     +   V  L+ DEAD +L  G+            ++ ++ + R Q
Sbjct  131  VATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFG-------QDAEKIAAETRWRKQ  183

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
             ++ SATL    +   +E++++ P  VD   E S                     R  + 
Sbjct  184  TLLFSATLEGELLVDFAERLLNDPVKVD--AEPS---------------------RRERK  220

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
             I     HA  N              IK+L      R I+  ++ + I+F R + D   L
Sbjct  221  KINQWYYHADSN-----------EHKIKLL-----ARFIETEEVTRGIVFIRRREDAREL  264

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
             +   ++G              L G+    +R   +++ K G V  L+ TDVAARGIDI 
Sbjct  265  SETLRKRG---------IRSAYLEGEMAQTQRNNAIDKLKSGIVTVLVATDVAARGIDID  315

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
             V +V+N  LP     Y+HRIGR  RA + G A+S V
Sbjct  316  DVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFV  352


 Score = 55.5 bits (132),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 40/62 (65%), Gaps = 0/62 (0%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           ++ F +  + PE+ +A+E+  +  PT IQ E+IP  +   DVL +A TG+GKT AF +P 
Sbjct  3   LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEESDVLGSAPTGTGKTAAFLLPA  62

Query  61  IQ  62
           +Q
Sbjct  63  LQ  64


>sp|Q818H2|CSHB_BACCR DEAD-box ATP-dependent RNA helicase CshB 
OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 
/ JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) 
OX=226900 GN=cshB PE=2 SV=1
Length=436

 Score = 119 bits (298),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 85/330 (26%), Positives = 153/330 (46%), Gaps = 57/330 (17%)

Query  290  LIVEPSRELAEQTLNNIKQFKKY-IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            +I  P+RELA+Q    I +  K+  ++  +    +IGG   +  +  L+    IVVGTPG
Sbjct  76   VITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLKKQPHIVVGTPG  135

Query  349  RLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSA  408
            R+ DLV    L + +   +++DEAD +L  G+   ++++  ++P      K LQ++V SA
Sbjct  136  RIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMP------KNLQMLVFSA  189

Query  409  TLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDD  468
            T+    +K   +K M  P  + +  +      + H +VP             K   + D 
Sbjct  190  TIPQ-KLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVP------------SKHRNKIDL  236

Query  469  VHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQ  528
            VH                            + + + K   A++F  TK   D +    ++
Sbjct  237  VH----------------------------KMLLQFKPYLAVVFTNTKKMADQVADGLME  268

Query  529  QGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVI  588
            +G              +HGD  P +RK+ +++ +  + ++++ TD+AARGIDI G+ +VI
Sbjct  269  RG---------LKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARGIDIQGISHVI  319

Query  589  NVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            N   P +   +VHR+ R  RA   G+A+++
Sbjct  320  NYQPPSDLDFFVHRVARTARAGHSGIAVTI  349


 Score = 43.1 bits (100),  Expect = 0.008, Method: Compositional matrix adjust.
 Identities = 20/59 (34%), Positives = 34/59 (58%), Gaps = 0/59 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            F++    P +  AV E+ +  PT IQ +  P++  G  V+  ++TGSGKT A+ +P +
Sbjct  5   TFTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTL  63


>sp|Q0CIQ3|RRP3_ASPTN ATP-dependent rRNA helicase rrp3 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=rrp3 
PE=3 SV=2
Length=445

 Score = 119 bits (298),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 150/354 (42%), Gaps = 61/354 (17%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P    +LI+ P+RELA+Q  + ++     I    +R  L+IGG+    Q   L     ++
Sbjct  94   PQQFHSLILAPTRELAQQIAHTVEALGARI---SVRCTLLIGGMDMISQAIALGKKPHVI  150

Query  344  VGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            V TPGRL D L +T   +L  +++LVLDEAD LL   +   ++++   +P      KR +
Sbjct  151  VATPGRLLDHLENTKGFSLRTLKYLVLDEADRLLDLDFGPILDKLLRLLP------KR-K  203

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
              + SAT+ S  V+ L    +  P  V +  ++     +    + +  K           
Sbjct  204  TYLFSATMSS-KVESLQRASLSDPVRVSVSTKNQTASKLLQSYLFIPHK-----------  251

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
                                          K  Y V  + E      IIF RT  +   L
Sbjct  252  -----------------------------FKDFYLVYLLNERAGQMGIIFTRTVHETQRL  282

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
                   G         F  + +HG      R  +L +F+      LI TDVAARG+DI 
Sbjct  283  SIMLRNLG---------FPAIPIHGQLSQSARLASLNKFRARSRNLLIATDVAARGLDIP  333

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGK  636
             V YV+N  LP + + Y+HR+GR  RA + G+A S V   + ++W  +  + GK
Sbjct  334  AVDYVLNYDLPQDSKTYIHRVGRTARAGKSGIAFSFVTQYEVELWLRIEDALGK  387


 Score = 62.0 bits (149),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 31/69 (45%), Positives = 45/69 (65%), Gaps = 2/69 (3%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F E+GV+  + +A EE+ +  PT IQ   IP+ L G D++  AETGSGKT AF +P++Q 
Sbjct  30  FRELGVIDSLCEACEELGYTAPTPIQERCIPIALEGRDLIGLAETGSGKTAAFVLPMLQA  89

Query  64  VYETLKDQQ  72
           + +  K QQ
Sbjct  90  LMD--KPQQ  96


>sp|A3LZT3|DBP10_PICST ATP-dependent RNA helicase DBP10 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DBP10 PE=3 SV=2
Length=931

 Score = 122 bits (306),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 104/351 (30%), Positives = 155/351 (44%), Gaps = 34/351 (10%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +A+I+ PSRELA QT   +K+F K  D   LR +++ GG +  DQ S + +  DIV+ TP
Sbjct  171  RAIILSPSRELALQTYKQVKEFSKGSD---LRAIVLTGGDSLEDQFSSMVSNPDIVIATP  227

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR   L    +L+L  V ++V DEAD L  QG+++ +N +   +P       + Q ++ S
Sbjct  228  GRFLHLQVEMQLDLKTVEYIVFDEADHLFEQGFAEQLNELLAVLP------PQRQSLLFS  281

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV--NPKTDRLWERLGK----  461
            ATL    V   ++  +  P  V L  +  + D +         N +   L   L +    
Sbjct  282  ATLPRSLV-DFAKAGLSNPVLVRLDADSKISDQLQMAFFTTKKNEREANLLYVLQEVIKM  340

Query  462  --------SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFC  513
                      +R  D    D         E  S+     K E    A         I+F 
Sbjct  341  PLGTAEQIKKLRLMDKRVNDEAEEEELENESGSKRKYKFKKERLPSANVLPSPHSTIVFV  400

Query  514  RTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTD  573
             TK   + +       G         +    ++G    H RK  L +F+ G    L+ TD
Sbjct  401  PTKHHVEYITTLLRDAG---------YLVSYIYGTLDQHARKNQLYQFRLGMTTVLVVTD  451

Query  574  VAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            VAARGIDI  +  V+N TLP   + ++HR+GR  RA   G A S+V  EKE
Sbjct  452  VAARGIDIPVLANVVNYTLPGSSKIFIHRVGRTARAGNKGWAYSIV-NEKE  501


 Score = 53.1 bits (126),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 37/60 (62%), Gaps = 0/60 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F   G+   +   + +  +  PT IQ ++IPLI+   DV+  A TGSGKT AF++PVI+
Sbjct  100  SFQSFGLSKLVLTNIAKKGYRQPTPIQRKTIPLIMANRDVVGMARTGSGKTAAFTLPVIE  159


>sp|A6RJA2|PRP28_BOTFB Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Botryotinia fuckeliana (strain B05.10) OX=332648 
GN=prp28 PE=3 SV=1
Length=783

 Score = 122 bits (305),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 94/365 (26%), Positives = 160/365 (44%), Gaps = 70/365 (19%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P A+I+ P+RELA+Q     K+F   +       + I+GG +  +Q   L NG +I++
Sbjct  455  DGPYAIILAPTRELAQQIEVEAKKFATPLG---FTCVSIVGGHSLEEQSYNLRNGAEIII  511

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV-----TSDG-  398
             TPGRL D +    L L Q  ++++DEAD ++  G+ + +N++ + +P       T D  
Sbjct  512  ATPGRLVDCIERRVLVLGQCCYIIMDEADRMIDLGFEESVNKILDALPVSNEKPDTDDAE  571

Query  399  -------------KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
                         +  Q ++ +AT+    V+K+++K +  P  V +       +TV    
Sbjct  572  DAQAMSRHLGGKDRYRQTMMYTATMPPA-VEKIAKKYLRRPAIVTIGNIGEAVETVEQ--  628

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
                               R + V  +D  +   N          +  GE+A        
Sbjct  629  -------------------RVEFVAGEDKRKKRLNE--------ILASGEFA--------  653

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
                I+F   K +CD + +         D K   F+ V LHG +   +R+  L   + G 
Sbjct  654  -PPIIVFVNIKRNCDAVAR---------DIKHMGFTSVTLHGSKTQEQREAALASVRSGA  703

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
               L+ TD+A RGID+  V  V+N  +    ++Y HRIGR GRA + G+AI+ +  E   
Sbjct  704  TNVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRTGRAGKSGVAITFLGNEDSD  763

Query  626  VWYHV  630
              Y +
Sbjct  764  TMYDL  768


 Score = 40.8 bits (94),  Expect = 0.054, Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 0/66 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M  +SE  +   +   + ++ +  P+ +Q  +IP+ L   D++  A TGSGKT AF +P+
Sbjct  379  MRNWSESKLPKRLLDVIHQVGYDEPSAVQRAAIPIALQARDLIGVAVTGSGKTAAFLLPL  438

Query  61   IQIVYE  66
            +  + E
Sbjct  439  LVYISE  444


>sp|Q8TDD1|DDX54_HUMAN ATP-dependent RNA helicase DDX54 OS=Homo 
sapiens OX=9606 GN=DDX54 PE=1 SV=2
Length=881

 Score = 122 bits (306),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 97/336 (29%), Positives = 150/336 (45%), Gaps = 57/336 (17%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+RELA QTL   K+  K+     L+  LI+GG    DQ + L    DI++ TP
Sbjct  168  RALILSPTRELALQTLKFTKELGKFTG---LKTALILGGDRMEDQFAALHENPDIIIATP  224

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GRL  +     L L  V ++V DEAD L   G+++ +  +  ++P         Q ++ S
Sbjct  225  GRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGH------QTVLFS  278

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL    V+  +   +  P  + L  +  + + +      V   T        K+ +   
Sbjct  279  ATLPKLLVE-FARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDT--------KAAVLLH  329

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
             +H  +  RP                             DQ ++F  TK   + L +   
Sbjct  330  LLH--NVVRP----------------------------QDQTVVFVATKHHAEYLTELLT  359

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
             Q         + SC  ++    P  RK NL +F  G    LI TD+AARG+DI  +  V
Sbjct  360  TQ---------RVSCAHIYSALDPTARKINLAKFTLGKCSTLIVTDLAARGLDIPLLDNV  410

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
            IN + P + + ++HR+GRV RA R G A SLVA ++
Sbjct  411  INYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDE  446


 Score = 50.8 bits (120),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 23/59 (39%), Positives = 37/59 (63%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  MG+   + + + +  + +PT IQ ++IP+IL G DV+  A TGSGKT  F +P+ +
Sbjct  98   FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFE  156


>sp|O22907|RH24_ARATH DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis 
thaliana OX=3702 GN=RH24 PE=1 SV=2
Length=760

 Score = 121 bits (304),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 103/352 (29%), Positives = 154/352 (44%), Gaps = 66/352 (19%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P  +I  P+RELA Q     K+F K      LR   + GG++  +Q   L+ G +IVV T
Sbjct  302  PIGVICAPTRELAHQIFLEAKKFSKAY---GLRVSAVYGGMSKHEQFKELKAGCEIVVAT  358

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL D++    L + +  +LVLDEAD +   G+   +  +  QI          Q ++ 
Sbjct  359  PGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQI------RPDRQTLLF  412

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNP----KTDRLWERLGKS  462
            SAT+  + V+KL+ +I+  P  V + GE  + +     VV V P    K   L E+L   
Sbjct  413  SATM-PWKVEKLAREILSDPIRVTV-GEVGMANEDITQVVNVIPSDAEKLPWLLEKL---  467

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
                               P M  E                      ++F   K   D +
Sbjct  468  -------------------PGMIDEG-------------------DVLVFASKKATVDEI  489

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
            E              + F    LHGD+    R + L++FK G    LI TDVAARG+DI 
Sbjct  490  EAQLTL---------NSFKVAALHGDKDQASRMETLQKFKSGVHHVLIATDVAARGLDIK  540

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRA-ERMGLAISLVATEKEKVWYHVCSS  633
             +  V+N  +  +   +VHRIGR GRA +R G+A +LV   + +    + +S
Sbjct  541  SLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREARFAGELVNS  592


 Score = 53.1 bits (126),  Expect = 9e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 0/58 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            F + G   +I  A+++  +  PT IQ +++P++L G DV+  A+TGSGKT AF +P+I
Sbjct  230  FEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMI  287


>sp|A2QRY2|DBP10_ASPNC ATP-dependent RNA helicase dbp10 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=dbp10 PE=3 SV=1
Length=932

 Score = 122 bits (305),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 101/342 (30%), Positives = 153/342 (45%), Gaps = 35/342 (10%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + LI+ PSRELA QTL  +K+  K  D   L+ +L++GG +  +Q S++    DIV+ TP
Sbjct  162  RGLILSPSRELALQTLKVVKELGKGTD---LKAVLLVGGDSLEEQFSMMAGNPDIVIATP  218

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR   L     L+LS +R++V DEAD L   G++  +  + + +P         Q ++ S
Sbjct  219  GRFLHLKVEMNLDLSSIRYVVFDEADRLFEMGFAAQLTEILHGLPSTR------QTLLFS  272

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL    V + +   +  PT V L  E  +   + +    V     +  ++ G       
Sbjct  273  ATLPKSLV-EFARAGLQEPTLVRLDTESKISPDLQNAFFSV-----KSGDKEGALMYILH  326

Query  468  DVHAKDNTRPGANSPEMWSE----------AIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
            +V  K  T P   +  M  E            +    + A+   +       IIF  TK 
Sbjct  327  NV-IKMPTGPTEAAQRMKEENASGKSSKFSKKRKRSDDKAINFKESPTKHSTIIFAATKH  385

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
              D L     + G         F+    +G      RK  +  F+ G    L+ TDVAAR
Sbjct  386  HVDYLYSLLNEAG---------FATSYAYGSLDQTARKIQVHNFRTGISNILVVTDVAAR  436

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            GIDI  +  VIN   P + + +VHR+GR  RA R G + SLV
Sbjct  437  GIDIPILANVINYDFPSQAKIFVHRVGRTARAGRTGWSYSLV  478


 Score = 55.1 bits (131),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  MG+   + +A+    + +PT IQ ++IP+I+   DV+  A TGSGKT AF IP+IQ
Sbjct  92   FQAMGLNANLLKAITRKGFSVPTPIQRKTIPVIMEDQDVVGMARTGSGKTAAFVIPMIQ  150


>sp|A6RY31|DHH1_BOTFB ATP-dependent RNA helicase dhh1 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=dhh1 PE=3 SV=1
Length=538

 Score = 120 bits (300),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 153/343 (45%), Gaps = 60/343 (17%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + LI+ P+RELA QT    K   +++    +  ++  GG   RD +  L+  V I+VGTP
Sbjct  117  QCLILVPTRELALQTSQVCKTLGQHLG---INVMVTTGGTTLRDDILRLQEPVHIIVGTP  173

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ DL      +LS+    V+DEAD LLS  ++  I ++    P      K  Q+++ S
Sbjct  174  GRILDLAGKNVADLSECNMFVMDEADKLLSPEFTIVIEQLLQFHP------KDRQIMLFS  227

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT     VK  S+K M  P  ++L                                   D
Sbjct  228  ATF-PMTVKDFSDKNMADPYEINL----------------------------------MD  252

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
            ++  +  T+  A   E   E +  L   ++     + +++Q+IIFC +    + L +   
Sbjct  253  ELTLRGITQFYAFVEE--KEKVHCLNTLFS-----KLQINQSIIFCNSTNRVELLAKKIT  305

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
            + G         +SC   H       R +    F+ G  R L+C+D+  RGIDI  V  V
Sbjct  306  ELG---------YSCFYSHARMIQANRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVV  356

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
            IN   P   + Y+HRIGR GR   +GLAI+L++ E     Y++
Sbjct  357  INFDFPKNAETYLHRIGRSGRFGHLGLAINLISWEDRFNLYNI  399


 Score = 52.0 bits (123),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 23/61 (38%), Positives = 37/61 (61%), Gaps = 0/61 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +  +  E+   + EM +  P+ IQ E+IP+ L G D+L  A+ G+GKT AF IP ++ 
Sbjct  49   FEDFSIKRELLMGIFEMGYEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALER  108

Query  64   V  64
            +
Sbjct  109  I  109


>sp|Q6CH58|RRP3_YARLI ATP-dependent rRNA helicase RRP3 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=RRP3 
PE=3 SV=1
Length=480

 Score = 119 bits (298),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 151/354 (43%), Gaps = 60/354 (17%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P     +++ P+RELA Q     +     +    LR  +++GG+    Q   L     ++
Sbjct  130  PQPLYCVVLAPTRELAYQISETFEALGSAMG---LRTAVVVGGMNMMTQAVALSKKPHVI  186

Query  344  VGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            V TPGRL D L +T   +L  ++FLV+DEAD LL   +   ++++   IP      ++  
Sbjct  187  VATPGRLVDHLENTKGFSLRTLKFLVMDEADRLLDMEFGPSLDKILKVIP------RQRN  240

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
              + SAT+ S  V+KL                 S+ D V   V       D L + +   
Sbjct  241  TYLFSATMTS-KVEKLQRA--------------SLVDPVRVAVSTKYQTADNLLQYMVFC  285

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
              +  D H                           V  + E+  +  IIF RTK D   +
Sbjct  286  PFKHKDTHL--------------------------VYLVSENAGNSMIIFARTKSDTQRI  319

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
                   G G          + LHGD     R   L +FK G    LI TDVA+RG+DI 
Sbjct  320  SLLLRNLGYG---------AIPLHGDLSQTARLGALNKFKSGSRNILIATDVASRGLDIP  370

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGK  636
             V  VIN  +P + ++Y+HR+GR  RA R G +++LV+    +++  +  + GK
Sbjct  371  AVDLVINYDIPSDSKSYIHRVGRTARAGRAGKSVALVSQYDLELYLRIEGALGK  424


 Score = 70.1 bits (170),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 32/63 (51%), Positives = 45/63 (71%), Gaps = 0/63 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F ++GV+  I +  EE+ +  PT IQA+SIP  L G D++  A+TGSGKT AF+IPV+Q 
Sbjct  66   FKDLGVIDSICETCEELKFTKPTPIQAQSIPYALEGRDIIGLAQTGSGKTAAFAIPVLQS  125

Query  64   VYE  66
            +YE
Sbjct  126  LYE  128


>sp|Q4P9P3|DRS1_USTMA ATP-dependent RNA helicase DRS1 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=DRS1 PE=3 SV=1
Length=932

 Score = 121 bits (304),  Expect = 4e-27, Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 157/340 (46%), Gaps = 42/340 (12%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + LI+ P+RELA Q  +  K   K+ D   +R  L +GG++ + Q + L+   ++V+ TP
Sbjct  410  RVLILAPTRELAIQCYSVGKSIAKFTD---IRFCLCVGGLSVKSQEAELKLRPEVVIATP  466

Query  348  GRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            GRL D V ++    L  +  LV+DEAD +L  G++D +N +    P+    G R Q ++ 
Sbjct  467  GRLIDHVRNSASFTLDDIEILVMDEADRMLEDGFADELNEIVKSCPK----GAR-QTMLF  521

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT+ + DV++L    +  P              V   V P      +L +   +     
Sbjct  522  SATM-TDDVEQLVRLSLKRP--------------VRLFVDPKRTTAKKLIQEFVRVRGTG  566

Query  467  DDVHAKDNTRPG-ANSPEMWSEAIKILKGEYAVRAI------KEHKMDQAIIFCRTKIDC  519
                A  +   G  + P  W    +  K E A R              Q +IF R+K   
Sbjct  567  TGGVAGADGLSGIQDQPATWISGGR--KSEDAQRPALLLSLCTRTFTSQTMIFVRSKKLA  624

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
              L+  F   G          S   LHGD    +R   L  F+ G   FL+ TD+A+RG+
Sbjct  625  HQLKIVFGLLG---------LSAGELHGDLSQEQRIDALTDFRDGKTDFLLATDLASRGL  675

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            DI GV  VIN  +P + + Y+HR+GR  RA R G A++LV
Sbjct  676  DIKGVQTVINYDMPGQFEAYLHRVGRTARAGRNGRAVTLV  715


 Score = 51.6 bits (122),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 23/61 (38%), Positives = 37/61 (61%), Gaps = 0/61 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            ++F    +   + +A+  + +  PT IQ+ +IP+ L G D++  A TGSGKT AF IP I
Sbjct  333  SSFGAFDLSRPVLRALSSLSFHKPTPIQSRTIPIALAGKDIVAGAVTGSGKTAAFMIPTI  392

Query  62   Q  62
            +
Sbjct  393  E  393


>sp|Q65RG7|RHLB_MANSM ATP-dependent RNA helicase RhlB OS=Mannheimia 
succiniciproducens (strain MBEL55E) OX=221988 GN=rhlB 
PE=3 SV=1
Length=417

 Score = 118 bits (295),  Expect = 4e-27, Method: Compositional matrix adjust.
 Identities = 111/358 (31%), Positives = 170/358 (47%), Gaps = 65/358 (18%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q  ++ ++  K      L+  L  GG     QL  +E G DI++
Sbjct  79   NHPRALIMAPTRELAVQIAHDAERMVK---TTGLKTALAYGGDGYDKQLKAIEAGADIII  135

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GR+ D V    + LS ++ +VLDEAD +   G+   I  +  + P   S  +RL  +
Sbjct  136  GTTGRIIDYVKQNIIALSHIQVVVLDEADRMFDLGFIKDIRYLMRKCP---SPKQRL-TL  191

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SATL S+ V++L+ + M+ P +V+              V P+     R+ E L     
Sbjct  192  LFSATL-SYKVRELAFEDMNDPEYVE--------------VEPLQKTGHRIKEELFYP--  234

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                          +N  +M    I +L+ E+  R I         IF  TK  C+ +  
Sbjct  235  --------------SNEDKM-PLLITLLEEEWPERCI---------IFANTKHQCEKIWG  270

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
            Y    G       H+     L GD    +R   L++F  G +  L+ TDVAARG+ I  V
Sbjct  271  YLAADG-------HRVGL--LTGDVAQKKRLSLLKQFTDGALDILVATDVAARGLHIPDV  321

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE--------KEKVWYHVCSSR  634
             +V N  LPD++++YVHRIGR GRA   G++IS    E        +E + +H+  S+
Sbjct  322  THVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPAIEEYIGHHIAVSQ  379


 Score = 41.2 bits (95),  Expect = 0.034, Method: Compositional matrix adjust.
 Identities = 21/53 (40%), Positives = 34/53 (64%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           F+++ +  ++ +A+E   +   T IQA S+P+ L G DV   A+TG+GKT AF
Sbjct  11  FADLPLNAKVLEALESNGFEYCTPIQALSLPISLAGKDVAGQAQTGTGKTMAF  63


>sp|A2RB17|RRP3_ASPNC ATP-dependent rRNA helicase rrp3 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=rrp3 PE=3 SV=1
Length=467

 Score = 119 bits (297),  Expect = 5e-27, Method: Compositional matrix adjust.
 Identities = 102/348 (29%), Positives = 152/348 (44%), Gaps = 59/348 (17%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR  349
            L++ P+RELA Q     K F+    +  +R  +I+GG+    Q   L     I+V TPGR
Sbjct  120  LVLAPTRELAYQI---SKSFESLGASMGVRSCVIVGGMDMVSQSISLGKKPHIIVATPGR  176

Query  350  L-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSA  408
            L D L +T   +L  +++LV+DEAD LL   +   ++++   +P      +  +  + SA
Sbjct  177  LLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPLLDKILKVLP------RERRTFLFSA  230

Query  409  TLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDD  468
            T+ S  V+ L    +  P  V      SV  + +  V             L +S++    
Sbjct  231  TMSS-KVESLQRASLSNPLRV------SVSTSKYQTV-----------STLLQSYLFIPQ  272

Query  469  VHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQ  528
             H                      K  Y V  + E      IIF RT  +   L   F+ 
Sbjct  273  KH----------------------KDLYLVYLLNEFAGQSTIIFTRTVNETQRLA--FLL  308

Query  529  QGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVI  588
            +  G       F  + LHG      R   L +F+      L+ TDVAARG+DI  V  V+
Sbjct  309  RALG-------FGAIPLHGQLSQSARLGALGKFRARSRNILVATDVAARGLDIPSVDVVL  361

Query  589  NVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGK  636
            N  LP +  +YVHR+GR  RA + GLAIS VA    +VW  +  + GK
Sbjct  362  NFDLPGDSPSYVHRVGRTARAGKSGLAISFVAQYDVEVWLRIEGALGK  409


 Score = 68.9 bits (167),  Expect = 7e-11, Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 45/63 (71%), Gaps = 0/63 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F E+G++ ++ +A E M +  PT IQ ESIPL L G D++  AETGSGKT AF++P++Q 
Sbjct  50   FKELGIIEQLCEACETMGYKAPTPIQRESIPLALKGRDLIGLAETGSGKTAAFALPILQA  109

Query  64   VYE  66
            + E
Sbjct  110  LME  112


>sp|Q6FM43|PRP28_CANGA Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 
/ JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=PRP28 
PE=3 SV=1
Length=582

 Score = 120 bits (300),  Expect = 5e-27, Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 160/343 (47%), Gaps = 57/343 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPK-LRELLIIGGVAARDQLSVLENGVDIV  343
            + P AL++ P+RELA+Q    I +     +N K L  + I+GG +  D    L NG DI+
Sbjct  252  DGPLALVLVPTRELAQQISQEINRLLSAWENKKNLNAVSIVGGHSMSDISHTLRNGCDIL  311

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG-KRLQ  402
            + TPGRL D++    + L++++ LVLDEAD ++  G+ D   +M + +  + +D     Q
Sbjct  312  IATPGRLLDVLDNHLVVLNKIQSLVLDEADRMIDLGFED---QMKSILSHLMADELAARQ  368

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE-DSVPDTVHHVVVPVNPKTDRLWERLGK  461
             ++ +ATL S  V+ +++  +  P  V +    DS    +  VV                
Sbjct  369  TMLFTATLSS-SVESIAKGYLKNPLHVSVGSRWDSDKPLITQVV----------------  411

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
             H   DD                  + +  LK +     +       AIIF   K   D 
Sbjct  412  RHTGDDD------------------KKLSFLKDDLIKNGLP------AIIFINYKETADW  447

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            L                +F+ V LHG +   +R+  +++ K G    LI T+VAARG+DI
Sbjct  448  LTLRL----------SDRFNIVTLHGSKSQSQRESAIQKLKSGTANVLIATNVAARGLDI  497

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
              V  V+N  +  +  +Y+HRIGR GRA + G+A++ +  E++
Sbjct  498  PDVALVVNFQMSKKFDDYIHRIGRTGRAGKTGIAVTYLTGEED  540


 Score = 40.4 bits (93),  Expect = 0.059, Method: Compositional matrix adjust.
 Identities = 27/65 (42%), Positives = 39/65 (60%), Gaps = 7/65 (11%)

Query  4    FSEMGVMP-EIAQAVEE-MDWLLPTDIQAESIPLILGGG-----DVLMAAETGSGKTGAF  56
            +SE  V+P ++ +A+ E M +  PT IQ  +IP  +        D+L  A TGSGKT AF
Sbjct  171  WSETNVIPTDLVRALTEGMGFDEPTAIQRITIPNAISSNKSVPRDILGIASTGSGKTLAF  230

Query  57   SIPVI  61
            SIP++
Sbjct  231  SIPIL  235


>sp|Q1EB38|DBP10_COCIM ATP-dependent RNA helicase DBP10 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DBP10 PE=3 SV=1
Length=927

 Score = 121 bits (303),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 102/341 (30%), Positives = 157/341 (46%), Gaps = 36/341 (11%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + LI+ PSRELA QTL  +K+  +  D   L+ +L++GG +  +Q   +    DI++ TP
Sbjct  153  RGLILSPSRELALQTLKVVKELGRGTD---LKCVLLVGGDSLEEQFGYMAGNPDIIIATP  209

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR   L     L+LS ++++V DEAD L   G++  +  + + +PQ        Q ++ S
Sbjct  210  GRFLHLKVEMNLDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPQSR------QTLLFS  263

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS-HIRT  466
            ATL    V+  +   +  PT V L  E  +   +  V   V     +  E+ G   HI  
Sbjct  264  ATLPKSLVE-FARAGLQEPTLVRLDTESKISPDLQSVFFTV-----KSAEKEGALLHILH  317

Query  467  DDVHAKD-NTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ-------AIIFCRTKID  518
            D +      T  G ++ E   +AI     +   R+ + +   Q        IIF  TK  
Sbjct  318  DVIKVPTGETEAGKHARE---QAISGKSSKKRKRSEQNNPNPQESPTEHSTIIFVATKHH  374

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
             D +     + G         F+    +G      RK  +  F+ G    L+ TDVAARG
Sbjct  375  VDYIASLLRESG---------FAVSYAYGSLDQTARKIQVSNFRTGISNILVVTDVAARG  425

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            IDI  +  VIN   P + + +VHR+GR  RA R G + SLV
Sbjct  426  IDIPILENVINYDFPSQAKIFVHRVGRTARAGRKGWSYSLV  466


 Score = 55.1 bits (131),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  MG+   + +A+    + +PT IQ ++IPL+L   DV+  A TGSGKT AF IP+I+
Sbjct  83   FQAMGLNANLLKAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIPMIE  141


>sp|Q6BRE4|DBP5_DEBHA ATP-dependent RNA helicase DBP5 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP5 PE=3 SV=1
Length=493

 Score = 119 bits (297),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 108/347 (31%), Positives = 167/347 (48%), Gaps = 70/347 (20%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            PN  + + + P+RELA QTL  I    K+    K+   LI+     R Q +       ++
Sbjct  172  PNT-QCICLAPARELARQTLEVITTMSKFT---KITSQLIVPDAMQRGQSTC----AHVL  223

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQ  402
            VGTPG L DL+    +N S+V+  VLDEAD +L SQG  D   R+   +P+ T      Q
Sbjct  224  VGTPGTLLDLIRRKLINTSKVKVFVLDEADNMLESQGLGDQCVRVKRTLPKAT------Q  277

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
            +++ SAT    +V+K +EK +     ++LK E+            +N       E + + 
Sbjct  278  LVLFSATFPD-EVRKYAEKFVPNANSLELKQEE------------LN------VEGIKQL  318

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
            ++  D  + K                 ++L   Y +  I       +IIF +TK D  N+
Sbjct  319  YMDCDSANHK----------------FEVLSELYGLLTI-----GSSIIFVKTK-DTANI  356

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
                ++      K+GH+  C  LH   +  ER + ++ F++G  + LI T+V ARGIDI 
Sbjct  357  LYAKMK------KEGHK--CSILHAGLETSERDRLIDDFREGRSKVLITTNVLARGIDIA  408

Query  583  GVPYVINVTLP-DEK-----QNYVHRIGRVGRAERMGLAISLVATEK  623
             V  V+N  LP D+K       Y+HRIGR GR  R+G++IS V  +K
Sbjct  409  SVSMVVNYDLPVDQKGAPDPSTYLHRIGRTGRFGRVGVSISFVHDQK  455


 Score = 41.6 bits (96),  Expect = 0.028, Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 43/67 (64%), Gaps = 2/67 (3%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSIPV  60
            +F E+G+  E+ + +  M +  P+ IQ +++PL++     +++  +++G+GKT AFS+ +
Sbjct  104  SFEELGLSSELLKGLYAMKFNKPSKIQEKALPLLISNPPKNMIGQSQSGTGKTAAFSLTM  163

Query  61   IQIVYET  67
            +  V E+
Sbjct  164  LSRVDES  170


>sp|A3LQ55|PRP5_PICST Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Scheffersomyces stipitis (strain ATCC 58785 / 
CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=PRP5 PE=3 
SV=2
Length=875

 Score = 120 bits (302),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 167/345 (48%), Gaps = 55/345 (16%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P  LI+ P+RELA Q    I  F K +    +      GG     Q++ L+ G  I+VGT
Sbjct  347  PIGLILSPTRELAVQIHKEITNFTKRLG---MTACCCYGGSPIESQIAELKKGAQILVGT  403

Query  347  PGRLDDLVS--TGKL-NLSQVRFLVLDEADGLLSQGYSDFINRMHNQI-PQVTSDGKRLQ  402
            PGR+ +L++  +G++ NL +V ++VLDEAD +   G+   + ++ +QI P+        Q
Sbjct  404  PGRIIELLAANSGRITNLRRVTYVVLDEADRMFDLGFEPQVTKISSQIRPES-------Q  456

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
             ++ SAT     ++ L++++++ P  + + G   V   +   V         L+E+   S
Sbjct  457  TVLFSATFPR-KIELLAKRLLYNPLEIIVGGISVVASEITQKV--------ELFEKGESS  507

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
             +                  E +   + IL     V +I E K  + +IF   +   D+L
Sbjct  508  QLED----------------EKFDRLLNILN----VFSI-ESKHSKVLIFVEKQSAADDL  546

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD--VRFLICTDVAARGID  580
                +         G    C+ +HG +   +RK  ++ F   D  V  LI T +AARG+D
Sbjct  547  LVKLL---------GSNHPCLTIHGGKDQIDRKYAIKEFSSKDSGVDILIATSIAARGLD  597

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            + G+  VIN   P+  ++YVHR+GR GRA   G AI+ V++++E+
Sbjct  598  VKGLDLVINYDPPNHMEDYVHRVGRTGRAGMKGTAITFVSSDQER  642


 Score = 48.1 bits (113),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 7/111 (6%)

Query  4    FSEMGVMPEIAQAVEE-MDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +S +G+       +E+ +++  PT IQ++++P I+ G D++  A+TGSGKT +F +P+++
Sbjct  274  WSHLGLPASYMNIIEDKLEYKAPTSIQSQALPAIMSGRDIIGVAKTGSGKTLSFVLPMLR  333

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA--IGSDGLCC  111
                 ++DQ + K G+  I    S   +  +  +   + F   +G    CC
Sbjct  334  ----HIQDQPDLKDGEGPIGLILSPTRELAVQIHKEITNFTKRLGMTACCC  380


>sp|Q5RFQ5|DDX6_PONAB Probable ATP-dependent RNA helicase DDX6 
OS=Pongo abelii OX=9601 GN=DDX6 PE=2 SV=1
Length=483

 Score = 118 bits (296),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 149/333 (45%), Gaps = 59/333 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +A+++ P+RELA Q      Q  K++   K+  +   GG   R  +  L++ V +V+ TP
Sbjct  166  QAMVIVPTRELALQVSQICIQVSKHMGGAKV--MATTGGTNLRGDIMRLDDTVHVVIATP  223

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ DL+  G   +  V+ +VLDEAD LLSQ   DF+  M + I  +    K  Q+++ S
Sbjct  224  GRILDLIKKGVAKVDHVQMIVLDEADKLLSQ---DFVQIMEDIILTLP---KNRQILLYS  277

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT     V+K     +  P  ++L  E ++     +           + ER         
Sbjct  278  ATF-PLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAY--------VTER--------Q  320

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
             VH  +          ++S                  +++Q+IIFC +    + L +   
Sbjct  321  KVHCLNT---------LFSRL----------------QINQSIIFCNSSQRVELLAKKIS  355

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
            Q G         +SC  +H   +   R +    F+ G  R L+CTD+  RGIDI  V  V
Sbjct  356  QLG---------YSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVV  406

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            IN   P   + Y+HRIG  GR   +GLAI+L+ 
Sbjct  407  INFDFPKLAETYLHRIGGSGRFGHLGLAINLIT  439


 Score = 54.3 bits (129),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 24/59 (41%), Positives = 38/59 (64%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +  +  E+   + EM W  P+ IQ ESIP+ L G D+L  A+ G+GK+GA+ IP+++
Sbjct  98   FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE  156


>sp|Q56X76|RH39_ARATH DEAD-box ATP-dependent RNA helicase 39 OS=Arabidopsis 
thaliana OX=3702 GN=RH39 PE=2 SV=2
Length=621

 Score = 119 bits (299),  Expect = 7e-27, Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 160/350 (46%), Gaps = 67/350 (19%)

Query  281  KFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGV  340
            K  P  P+ +++ P+REL+EQ     K    +    + R +L+ GG   R Q   L N +
Sbjct  184  KTKPRRPRTVVLCPTRELSEQVYRVAKSISHHA---RFRSILVSGGSRIRPQEDSLNNAI  240

Query  341  DIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ--VTSDG  398
            D+VVGTPGR+   +  G +    + +LVLDEAD +  +G+   I +    + Q  + ++ 
Sbjct  241  DMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAPLNQRALKTND  300

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER  458
            +  Q ++ +AT+ +  V+KL ++                                   E 
Sbjct  301  QGFQTVLVTATM-TMAVQKLVDE-----------------------------------EF  324

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE------HKMDQAIIF  512
             G  H+RT  +H K      AN+     + IK+  GE  + A+ +       K  + ++F
Sbjct  325  QGIEHLRTSTLHKKI-----ANA---RHDFIKLSGGEDKLEALLQVLEPSLAKGSKVMVF  376

Query  513  CRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK--KGDVRFLI  570
            C T      ++ Y  +         +Q S V  HG+    +R +NL++FK  +GD   L+
Sbjct  377  CNTLNSSRAVDHYLSE---------NQISTVNYHGEVPAEQRVENLKKFKDEEGDCPTLV  427

Query  571  CTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            CTD+AARG+D+  V +V+    P    +Y+HR GR  R    G   SLV+
Sbjct  428  CTDLAARGLDL-DVDHVVMFDFPKNSIDYLHRTGRTARMGAKGKVTSLVS  476


 Score = 55.5 bits (132),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 2/75 (3%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F E+G+  E+  A++E++  +PT+IQ   IP ++    V++ + TGSGKT A+ +P++Q+
Sbjct  114  FQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQL  173

Query  64   VYETLKDQQEGKKGK  78
            + E   +   GKK K
Sbjct  174  MRE--DEANLGKKTK  186


>sp|Q6CXT4|IF4A_KLULA ATP-dependent RNA helicase eIF4A OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / 
NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=TIF1 PE=3 SV=1
Length=396

 Score = 117 bits (292),  Expect = 7e-27, Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 156/335 (47%), Gaps = 58/335 (17%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            AP+ LI+ P+RELA Q    +     ++D   ++    IGG + ++    L  G  I+VG
Sbjct  90   APQGLILAPTRELALQIQKVVMALAIHMD---VKVHACIGGTSLQEDSEALRGGAQIIVG  146

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGR+ D++         ++  +LDEAD +LS G+ + I  +   +P  +      QV++
Sbjct  147  TPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTS------QVVL  200

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT+   DV +++ K M  P  + +K                  K +   E +G+ ++ 
Sbjct  201  LSATMPG-DVLEVTSKFMKDPVRILVK------------------KDELTLEGIGQYYVN  241

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
             ++   K              + +  L    +V         QA+IFC T+   + L + 
Sbjct  242  VEEEQYK-------------YDCLTDLYDSISVT--------QAVIFCNTRRKVEELTER  280

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
                      + + F+   ++ D +  ER   ++ F+ G  R LI TD+ ARGID+  V 
Sbjct  281  L---------RENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVS  331

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
             VIN  LP  K+NY+HRIGR GR  R G+AI+ V 
Sbjct  332  LVINYDLPSNKENYIHRIGRGGRFGRKGIAINFVT  366


 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 0/70 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +F ++ +  E+ + +    ++ P+ IQ  +I  I+ G DVL  A++G+GKTG FSI  +Q
Sbjct  23  SFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQ  82

Query  63  IVYETLKDQQ  72
            + E +K  Q
Sbjct  83  NIDEKIKAPQ  92


>sp|Q15N18|RHLB_PSEA6 ATP-dependent RNA helicase RhlB OS=Pseudoalteromonas 
atlantica (strain T6c / ATCC BAA-1087) OX=3042615 
GN=rhlB PE=3 SV=1
Length=421

 Score = 117 bits (293),  Expect = 8e-27, Method: Compositional matrix adjust.
 Identities = 104/333 (31%), Positives = 163/333 (49%), Gaps = 57/333 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+A+I+ P+RELA Q  N+ +   ++     L   LI GG   + Q   LE GVDI++GT
Sbjct  82   PRAIIMAPTRELAVQIFNDAELLSQHTG---LSLGLIYGGEGYQSQREKLEEGVDIIIGT  138

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
             GR+ D       +L+ ++  VLDEAD +   G+   I  + N++P+ T   +RL ++  
Sbjct  139  TGRIIDYYKQNIFSLAGIQVAVLDEADRMFDLGFIKDIRYLFNRMPKPT---ERLSMLF-  194

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SATL S+ V++L+ + M  PT V                  V P      ER   + I+ 
Sbjct  195  SATL-SYRVQELAYEHMDNPTHVQ-----------------VEP------ERKTGTRIKE  230

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
            +  +  D  +         +  + +++ E+          D+AI+F  TK  C+ +  + 
Sbjct  231  ELFYPSDEDK--------MALLLSLMEEEWP---------DKAIVFANTKHSCEKVADWL  273

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                      GH+     L GD   ++R + LE F  G +  L+ TDVAARG+ I  V +
Sbjct  274  -------QADGHRVGL--LSGDVPQNKRLKILEDFTSGKLDILVATDVAARGLHIPMVSH  324

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            V N  LPD+ ++YVHRIGR GRA + G +IS  
Sbjct  325  VFNYDLPDDAEDYVHRIGRTGRAGQSGSSISFA  357


 Score = 40.8 bits (94),  Expect = 0.042, Method: Compositional matrix adjust.
 Identities = 24/78 (31%), Positives = 43/78 (55%), Gaps = 3/78 (4%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F+++ +  ++ +A+   ++   T IQA S+P +L G D+   A+TG+GKT AF   ++  
Sbjct  11  FADLPINEQVVKALSAANFSHCTPIQALSLPPLLEGNDIAGQAQTGTGKTIAF---LVAT  67

Query  64  VYETLKDQQEGKKGKTTI  81
            +  L + Q  KK    I
Sbjct  68  FHYLLSNPQPTKKQPRAI  85


>sp|A1D6X9|DBP8_NEOFI ATP-dependent RNA helicase dbp8 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp8 
PE=3 SV=1
Length=526

 Score = 119 bits (297),  Expect = 8e-27, Method: Compositional matrix adjust.
 Identities = 105/341 (31%), Positives = 156/341 (46%), Gaps = 64/341 (19%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPK-LRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            +++ P+RELA Q    IK     I  P+ ++ +LI GG   R Q   L     +V+ TPG
Sbjct  168  VVLTPTRELALQIFEQIK----AISAPQSMKPVLITGGTDMRPQAIALAGRPHVVIATPG  223

Query  349  RLDDLV-STGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            RL D + S+G+     L +VR +VLDEAD LL+ G    +  +   +  +    +R Q +
Sbjct  224  RLADHIKSSGEDTVCGLKRVRMVVLDEADRLLASGPGSMLPDVETCLSALPPSSER-QTL  282

Query  405  VCSATLHSFDVKKL------SEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER  458
            + +AT+ + +V+ L      + K   F T +  + + S+P T+    + V P T R  E 
Sbjct  283  LFTATV-TPEVRALKNMPRSANKPPVFVTEISTENQGSIPPTLKQTYLKV-PLTHR--EA  338

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
                 + T+D    + +RP                               AIIFC     
Sbjct  339  FLHVLLSTED----NASRP-------------------------------AIIFCNHTKT  363

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
             D LE+          +  H+ +   LH      ER  NL RF+    R L+ TDVA+RG
Sbjct  364  ADLLERML-------RRLTHRVTS--LHSLLPQSERNANLARFRASAARILVATDVASRG  414

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +DI  V  VIN  +P    +YVHR+GR  RA R G AI+LV
Sbjct  415  LDIPTVSLVINYDVPRNPDDYVHRVGRTARAGRSGEAITLV  455


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 25/61 (41%), Positives = 37/61 (61%), Gaps = 0/61 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            ++F+ + V P +  ++  M    PT IQ   IP IL G D +  + TGSGKT AFS+P++
Sbjct  96   SSFAALNVAPWLVGSLTTMAVRKPTAIQKACIPEILKGRDCIGGSRTGSGKTIAFSVPML  155

Query  62   Q  62
            Q
Sbjct  156  Q  156


>sp|Q4PDT1|DBP3_USTMA ATP-dependent RNA helicase DBP3 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP3 PE=3 SV=1
Length=585

 Score = 119 bits (298),  Expect = 9e-27, Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 154/316 (49%), Gaps = 52/316 (16%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG--VDIVVGTP  347
            L++ P+RELA QT  N+ +  K +    +  + + GGV+ ++Q+ +L     V IVVGTP
Sbjct  243  LVIAPTRELAIQTEENMAKLGKSMG---IGMICLYGGVSKQEQVRLLNQSPPVRIVVGTP  299

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D+   G L+LS V +LVLDEAD +L +G+   I  +   I    S  +     + S
Sbjct  300  GRVLDMARDGSLDLSGVTYLVLDEADRMLDKGFEPDIRAI---IGMCKSREEGRHTSMFS  356

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT     V+ L+E  M+ P  V +  ++          +  N + ++  E L        
Sbjct  357  ATWPPA-VRGLAESFMNGPVRVTVGSDE----------LSANRRVEQTVEVLA-------  398

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
            D +AK+                  L+   A R+      D+ +IF   K +   +EQ  +
Sbjct  399  DGYAKER------------RLNDFLRSVNAQRS-----KDKILIFALYKKEAQRIEQT-L  440

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
            ++GG        F    +HGD   +ER  +LERFK  +   L+ TDVAARG+DI  V +V
Sbjct  441  RRGG--------FKVSGIHGDLGQNERIASLERFKSAETPLLVATDVAARGLDIPNVEHV  492

Query  588  INVTLPDEKQNYVHRI  603
            +N T P   ++YVHRI
Sbjct  493  VNYTFPLTIEDYVHRI  508


 Score = 43.9 bits (102),  Expect = 0.006, Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 41/78 (53%), Gaps = 2/78 (3%)

Query  1    MAAFSEMG--VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSI  58
            M  F E+   V   + + ++   +  PT IQA   P++L   DV+  AETGSGKT AF +
Sbjct  156  MVDFRELDGKVDAAVKKTLDSQGFSTPTPIQACCWPVLLQNKDVVGIAETGSGKTFAFGL  215

Query  59   PVIQIVYETLKDQQEGKK  76
            P +Q +    K    GKK
Sbjct  216  PALQHLVTKHKVLDSGKK  233


>sp|P23394|PRP28_YEAST Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Saccharomyces cerevisiae (strain ATCC 204508 
/ S288c) OX=559292 GN=PRP28 PE=1 SV=2
Length=588

 Score = 119 bits (298),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 150/344 (44%), Gaps = 52/344 (15%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYID---NPKLRELLIIGGVAARDQLSVLENGVD  341
            + PKALI+ P+REL +Q     ++  K      N   + + I+GG +  +    L  G D
Sbjct  253  DGPKALILAPTRELVQQIQKETQKVTKIWSKESNYDCKVISIVGGHSLEEISFSLSEGCD  312

Query  342  IVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL  401
            I+V TPGRL D +    L + QV  LVLDEAD ++  G+ D +  +  ++          
Sbjct  313  ILVATPGRLIDSLENHLLVMKQVETLVLDEADKMIDLGFEDQVTNILTKVDINADSAVNR  372

Query  402  QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK  461
            Q ++ +AT+    ++K++   M  P +  +  E      +  VV   +   D+       
Sbjct  373  QTLMFTATMTPV-IEKIAAGYMQKPVYATIGVETGSEPLIQQVVEYADNDEDKF------  425

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
                                     + +K +  +Y             IIF   K   D 
Sbjct  426  -------------------------KKLKPIVAKYD---------PPIIIFINYKQTADW  451

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            L + F        +K        LHG +   +R+ +L+ F+   V+ +I T+VAARG+DI
Sbjct  452  LAEKF--------QKETNMKVTILHGSKSQEQREHSLQLFRTNKVQIMIATNVAARGLDI  503

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
              V  V+N  +  +  +Y+HRIGR GRA   G A+S V+  +++
Sbjct  504  PNVSLVVNFQISKKMDDYIHRIGRTGRAANEGTAVSFVSAAEDE  547


 Score = 37.0 bits (84),  Expect = 0.72, Method: Compositional matrix adjust.
 Identities = 22/63 (35%), Positives = 35/63 (56%), Gaps = 5/63 (8%)

Query  4    FSEMGVMPE--IAQAVEEMDWLLPTDIQAESIPLILGGG---DVLMAAETGSGKTGAFSI  58
            + E+ ++P   +   ++E+ +  PT IQ  +IP +       D L  A TGSGKT AF I
Sbjct  174  WEELNIIPRDLLRVIIQELRFPSPTPIQRITIPNVCNMKQYRDFLGVASTGSGKTLAFVI  233

Query  59   PVI  61
            P++
Sbjct  234  PIL  236


>sp|A3LNL1|PRP28_PICST Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Scheffersomyces stipitis (strain ATCC 58785 / 
CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=PRP28 PE=3 
SV=2
Length=482

 Score = 118 bits (295),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 167/357 (47%), Gaps = 57/357 (16%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P  LI+ P+RELA+Q     K+ +K+ D   L  + IIGG    + +  +  GV +VV
Sbjct  138  NKPLGLILAPTRELAQQI---TKEAQKFGDRLGLNVVSIIGGHQYEETVHSIRTGVHVVV  194

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI----------NRMHNQIPQV  394
             TPGRL D +    + L +  +L++DEAD ++  G+   +          +R+++ I  +
Sbjct  195  ATPGRLVDSLERNIIGLDKCYYLIMDEADRMIDMGFEKALQSILSYVPSTDRLNSTIDSM  254

Query  395  TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDR  454
                K+   ++ +AT+ S  ++K+++  +  P ++ + G     D   H+V        +
Sbjct  255  IFHIKKRITLMFTATI-SPPIEKITKNFLIKPGYLYIGGAGEALD---HIV--------Q  302

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ----AI  510
             +E LG +   ++D  +K                    + +  VR I++H  +      I
Sbjct  303  NFEYLGSATGGSEDFDSK--------------------RFDKLVRIIQQHSRESRQFSII  342

Query  511  IFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLI  570
            IF   K  CD L    +++ G  D        V +HG +    R++ +  F+  + R LI
Sbjct  343  IFANYKRVCD-LLSLELEKNGFRDN-------VVIHGSKTQELREKAISSFRSHESRILI  394

Query  571  CTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             TDVAARGID+  V  V+N  +  +   YVHRIGR GRA   G + + +      V+
Sbjct  395  ATDVAARGIDVPNVSLVVNFQMSRKFDEYVHRIGRTGRAGNRGESYTFIDDSDSDVF  451


 Score = 52.4 bits (124),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 38/57 (67%), Gaps = 0/57 (0%)

Query  17   VEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQE  73
            V+++++L PT IQ  +IPL L   DV+  AETGSGKT AF IP++  +  T K+  E
Sbjct  72   VDKLEYLEPTPIQRAAIPLALNQRDVVGIAETGSGKTLAFLIPLLSYILNTDKNYLE  128


>sp|Q4FZF3|DDX49_MOUSE Probable ATP-dependent RNA helicase DDX49 
OS=Mus musculus OX=10090 GN=Ddx49 PE=2 SV=1
Length=480

 Score = 118 bits (295),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 114/404 (28%), Positives = 180/404 (45%), Gaps = 76/404 (19%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR  349
            L++ P+RELA Q     +   K +    L++ +I+GG+    Q   L     +V+ TPGR
Sbjct  74   LVLTPTRELAYQIAEQFRVLGKPLG---LKDCIIVGGMDMVAQALELSRKPHVVIATPGR  130

Query  350  L-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSA  408
            L D L S+   N+ +++FLV+DEAD LL QG +DF   +   +  V +   R Q ++ SA
Sbjct  131  LADHLRSSNTFNMKKIQFLVMDEADRLLEQGCTDFTTDLETILAAVPA---RRQTLLFSA  187

Query  409  TLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDD  468
            TL    +K+L     + P + + +                   T R  E+L + ++    
Sbjct  188  TLTD-TLKELQGLATNEPFFWEAQA------------------TVRTVEQLDQRYLLV--  226

Query  469  VHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF----CRT-KIDCDNLE  523
                         PE   +A  +    + V+  ++   D +II     C+T +I C  L 
Sbjct  227  -------------PEKVKDAYLV----HLVQTFQDQLEDCSIIIFTNTCKTCQILCMMLR  269

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
            ++              F  V LH   K  ER   L +FK    R LI TDVA+RG+DI  
Sbjct  270  KF-------------NFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPT  316

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRL  643
            V  VIN   P   + Y+HR+GR  RA R G AI+LV T+ +    H    + K      +
Sbjct  317  VQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLV-TQYDIHLLHAIEEQIKQQLAELV  375

Query  644  KEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGK  687
             E+         +Q+L+++       + + E +IK+    FD K
Sbjct  376  VEEAEV------LQILTQV------NVVRRECEIKLEASHFDEK  407


 Score = 54.3 bits (129),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 27/66 (41%), Positives = 40/66 (61%), Gaps = 0/66 (0%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           MA F+E+G+   + +   ++    PT +Q   IP IL G D L  A+TGSGKT AF +P+
Sbjct  1   MAGFAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPI  60

Query  61  IQIVYE  66
           +Q + E
Sbjct  61  LQKLSE  66


>sp|A1CKJ0|DBP8_ASPCL ATP-dependent RNA helicase dbp8 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp8 PE=3 SV=1
Length=523

 Score = 118 bits (296),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 154/340 (45%), Gaps = 62/340 (18%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPK-LRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            LI+ P+RELA Q    IK     I  P+ ++ +LI GG   R Q   L     +VV TPG
Sbjct  165  LILTPTRELALQIFEQIK----AISAPQSMKPVLITGGTDMRSQALALAGRPHVVVATPG  220

Query  349  RLDDLV-STGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            RL D + S+G+     L +VR +VLDEAD LLS G    +  +   +  +    +R Q +
Sbjct  221  RLADHIKSSGEDTVCGLKRVRMVVLDEADRLLSSGPGSMLPDVETCLSALPPSSER-QTL  279

Query  405  VCSATLHS-----FDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
            + +AT+        ++ + + K   F T +  + + +VP T+    + V P T R  E  
Sbjct  280  LFTATVTPEVRALKNMPRAANKPPVFVTEISSESQGTVPPTLKQTYLKV-PLTHR--EAF  336

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
                + T+     ++T+P                               AIIFC      
Sbjct  337  LHVLLSTEG----NSTKP-------------------------------AIIFCNHTKTA  361

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            D LE+          +  H+ +   LH      ER  NL RF+    R L+ TDVA+RG+
Sbjct  362  DLLERML-------RRLSHRVTS--LHSLLPQSERNANLARFRASAARILVATDVASRGL  412

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            DI  V  V+N  +P    +YVHR+GR  RA R G +++LV
Sbjct  413  DIPSVSLVVNYDVPRNPDDYVHRVGRTARAGRSGESVTLV  452


 Score = 48.9 bits (115),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 25/61 (41%), Positives = 37/61 (61%), Gaps = 0/61 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            ++FS + V P +  ++  +    PT IQ   IP IL G D +  + TGSGKT AFS+P++
Sbjct  93   SSFSALNVAPWLVGSLTTLAVRKPTAIQKACIPEILNGKDCIGGSRTGSGKTIAFSVPML  152

Query  62   Q  62
            Q
Sbjct  153  Q  153


>sp|Q8K4L0|DDX54_MOUSE ATP-dependent RNA helicase DDX54 OS=Mus 
musculus OX=10090 GN=Ddx54 PE=1 SV=1
Length=874

 Score = 120 bits (301),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 96/336 (29%), Positives = 154/336 (46%), Gaps = 57/336 (17%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+RELA QT+   K+  K+     L+  LI+GG    DQ + L    DI++ TP
Sbjct  167  RALILSPTRELALQTMKFTKELGKFTG---LKTALILGGDKMEDQFAALHENPDIIIATP  223

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GRL  +     L L  V ++V DEAD L   G+++ +  +  ++P         Q ++ S
Sbjct  224  GRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGH------QTVLFS  277

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL    V + +   +  P  + L                V+ K +          ++T 
Sbjct  278  ATLPKLLV-EFARAGLTEPVLIRLD---------------VDSKLN--------EQLKTS  313

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
             +  +++T+           A+ +   +  VR       DQ ++F  TK   + L +  +
Sbjct  314  FLLVREDTK----------AAVLLYLLQNVVRP-----QDQTVVFVATKHHAEYLTELLM  358

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
             QG          SC  ++       RK NL +F       LI TD+AARG+DI  +  V
Sbjct  359  GQG---------VSCAHIYSALDQTARKINLAKFTHNKCSTLIVTDLAARGLDIPLLDNV  409

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
            IN + P + + ++HR+GRV RA R G A SLVA ++
Sbjct  410  INYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDE  445


 Score = 50.8 bits (120),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 12/85 (14%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F  MG+   + + + +  + +PT IQ ++IP+IL G DV+  A TGSGKT  F +P    
Sbjct  97   FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLP----  152

Query  64   VYETLKDQQEGKKGKTTIKTGASVL  88
            ++E LK +        + +TGA  L
Sbjct  153  MFERLKAR--------SAQTGARAL  169


>sp|Q7S9J4|DBP10_NEUCR ATP-dependent RNA helicase dbp-10 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 
/ DSM 1257 / FGSC 987) OX=367110 GN=dbp-10 PE=3 SV=1
Length=934

 Score = 120 bits (301),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 99/353 (28%), Positives = 159/353 (45%), Gaps = 66/353 (19%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ PSRELA QTL  +K+  +  D   L+ +L++GG +  +Q  ++ +  DI++ TP
Sbjct  171  RALIMSPSRELALQTLKVVKELGRGTD---LKTVLLVGGDSLEEQFGMMASNPDIIIATP  227

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR   L     L+L+ ++++V DEAD L   G++  +  + + +P         Q ++ S
Sbjct  228  GRFLHLKVEMNLSLASIKYVVFDEADRLFEMGFATELTEILHALPPSR------QTLLFS  281

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSV-PDT-------------------VHHVV-V  446
            ATL S  V+  +   +  P+ V L  E  V PD                    +H V+ V
Sbjct  282  ATLPSSLVE-FARAGLQEPSLVRLDAETKVSPDLESAFFAVKGGEKEGALLHLLHDVIKV  340

Query  447  PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM  506
            P+ P      E        +D++ A+   R    +P       K    EY+         
Sbjct  341  PLGPPEGTKEE--------SDELQARKRKREYRPNP-------KEKPTEYST--------  377

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
               IIF  TK   + +       G         F+   ++G      R   ++ F++G  
Sbjct  378  ---IIFTATKHHVEYIANLLKLAG---------FAVSYVYGSLDQTARLIQVDNFRRGRT  425

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
              L+ TDVAARGID+  +  VIN   P + + +VHR+GR  RA + G A  LV
Sbjct  426  HILVVTDVAARGIDMPALANVINYDFPSQPKIFVHRVGRTARAGQRGWAYGLV  478


 Score = 55.1 bits (131),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 27/59 (46%), Positives = 38/59 (64%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  MG+   + +A+    + +PT IQ ++IPLIL   DV+  A TGSGKT AF IP+I+
Sbjct  101  FQAMGLNAHLLRAITRKGFSVPTPIQRKAIPLILERKDVVGMARTGSGKTAAFVIPMIE  159


>sp|Q4WCW2|SUB2_ASPFU ATP-dependent RNA helicase sub2 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=sub2 PE=3 SV=1
Length=448

 Score = 117 bits (293),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 100/358 (28%), Positives = 163/358 (46%), Gaps = 57/358 (16%)

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            Q + +P     L++  +RELA Q  N   +F KY+  P ++  +  GG   +  + VL N
Sbjct  119  QLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYL--PDVKTAVFYGGTPIQKDIEVLSN  176

Query  339  G---VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQ-GYSDFINRMHNQIPQV  394
                 +IVVGTPGRL+ LV   KL+L  V+  VLDE D +L Q G    I  M   + ++
Sbjct  177  KESYPNIVVGTPGRLNALVREKKLSLRNVKAFVLDECDKMLDQIGKQAQIAHMRRDVQEI  236

Query  395  -TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTD  453
              +     QV++ SATL S +++ + +K M  P  V +  +D    T+H +         
Sbjct  237  FRATPADKQVMMFSATL-SQEIRPICKKFMRNPLEVYV--DDDTKLTLHGL--------Q  285

Query  454  RLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFC  513
            + + +L +S                              K       +   + +Q IIF 
Sbjct  286  QYYIKLSESE-----------------------------KNRKLNELLDSLEFNQVIIFV  316

Query  514  RTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTD  573
            ++ +  + L++           +   F  + +H      ER +  + FK+ + R  + TD
Sbjct  317  KSTLRANELDKLL---------RECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATD  367

Query  574  VAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK-EKVWYHV  630
            V  RGIDI  +   IN  LP +  +Y+HR+GR GR    GL+IS V++E+ EKV   +
Sbjct  368  VFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSSEEDEKVLKEI  425


>sp|A3LS22|RRP3_PICST ATP-dependent rRNA helicase RRP3 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=RRP3 PE=3 SV=3
Length=484

 Score = 117 bits (294),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 150/346 (43%), Gaps = 62/346 (18%)

Query  290  LIVEPSRELAEQTLNNIKQ-FKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            L++ P+RELA Q    IK+ F        +R + ++GG+   DQ   L     I++ TPG
Sbjct  143  LVLAPARELAYQ----IKETFDALGSTMGVRTVCLVGGMDMMDQARDLMRKPHIIIATPG  198

Query  349  R-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            R +D L  T   +L  +++ V+DEAD LL   +   ++++  QIP      KR    + S
Sbjct  199  RIMDHLEHTKGFSLKMLKYFVMDEADKLLDLEFGPVLDKILKQIP-----SKR-TTYLFS  252

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+ +  ++KL    +H P  V +  +    D                   L +S +   
Sbjct  253  ATMTN-KIEKLQRASLHNPVRVAVSSKYQTADN------------------LIQSMMLVS  293

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
            D +                      K  Y +  + E      IIF RT+           
Sbjct  294  DGY----------------------KNTYLIHLLNEFVGKSIIIFARTRAHTQRTSILCR  331

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
              G         FS V LHGD    +R  +L +FK G    LI TDVAARG+DI  V  V
Sbjct  332  ILG---------FSAVPLHGDLTQAQRLGSLNKFKSGTANILIATDVAARGLDIPSVDVV  382

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
            IN  +P + + YVHR+GR  RA R G +ISLV     +++  +  S
Sbjct  383  INYDIPTDSKAYVHRVGRTARAGRSGKSISLVTQYDLEMYLRIEQS  428


 Score = 71.2 bits (173),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 50/65 (77%), Gaps = 0/65 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + FSE+ ++PE+ +A+++M +  PT IQ+E+IP  L G D++  A+TGSGKT AF+IP++
Sbjct  71   STFSELKLVPELLEAIQQMKFSKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPIL  130

Query  62   QIVYE  66
            Q ++E
Sbjct  131  QSLWE  135


>sp|A2QAX7|DRS1_ASPNC ATP-dependent RNA helicase drs1 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=drs1 PE=3 SV=1
Length=824

 Score = 120 bits (300),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 171/384 (45%), Gaps = 63/384 (16%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +  I+ P+RELA Q  N   +   Y D   +    ++GG + R+Q ++L+   D+++ TP
Sbjct  382  RVAILMPTRELAVQCYNVATKLATYTD---ITFCQLVGGFSLREQENILKKRPDVIIATP  438

Query  348  GR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            GR +D + ++    +  +  LVLDEAD +L  G++D +N +   IP      K  Q ++ 
Sbjct  439  GRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIP------KSRQTMLF  492

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT+    V KL    ++ P  + +  + +   T+    V + P   R  +RLG      
Sbjct  493  SATMTDT-VDKLIRVGLNRPVRLMVDAKKNTAVTLVQEFVRLRP--GREDKRLG------  543

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                                         Y +   KE    + I+F R K +   +   F
Sbjct  544  -----------------------------YLLYLCKEIYTGRVIVFFRQKKEAHRVRIIF  574

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
               G              LHG      ++Q++E F++G   FL+ TD+A+RG+DI GV  
Sbjct  575  GLLG---------LKAAELHG---SMSQEQSVENFREGKAAFLLATDLASRGLDIKGVET  622

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW-YHVCSSRGKGC-YNTRLK  644
            VIN   P   + Y+HR+GR  RA R G A ++ A    KV    V + + +G    +R+ 
Sbjct  623  VINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKAGKSQGAKIASRVI  682

Query  645  EDGGCTIWYNEM-QLLSEIEEHLN  667
            E      W  +  +L  E+EE L+
Sbjct  683  EPAVADSWAAKAEELADEVEEVLS  706


 Score = 47.0 bits (110),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 22/60 (37%), Positives = 39/60 (65%), Gaps = 0/60 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F E  +   I + +  +++  PT IQ ++IP+ L G D++ +A TGSGKT AF +P+++
Sbjct  310  SFQEFNLSRPILRGLAGVNFSNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILE  369


>sp|Q5RKI1|IF4A2_RAT Eukaryotic initiation factor 4A-II OS=Rattus 
norvegicus OX=10116 GN=Eif4a2 PE=1 SV=1
Length=407

 Score = 116 bits (291),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 107/359 (30%), Positives = 166/359 (46%), Gaps = 64/359 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGT  346
            +AL++ P+RELA+Q    I     Y+          IGG   R+++  L+     IVVGT
Sbjct  103  QALVLAPTRELAQQIQKVILALGDYMGATCHA---CIGGTNVRNEMQKLQAEAPHIVVGT  159

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGR+ D+++   L+   ++  VLDEAD +LS+G+ D I  +  ++         +QV++ 
Sbjct  160  PGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKL------NTSIQVVLL  213

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT+ + DV ++++K M  P  + +K E+   + +    + V        ER        
Sbjct  214  SATMPT-DVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINV--------ER--------  256

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                            E W   +  L   Y    I      QA+IF  T+   D L +  
Sbjct  257  ----------------EEWK--LDTLCDLYETLTIT-----QAVIFLNTRRKVDWLTEKM  293

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                         F+   LHGD    ER   +  F+ G  R LI TD+ ARGID+  V  
Sbjct  294  ---------HARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSL  344

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            VIN  LP  ++NY+HRIGR GR  R G+AI+ V  E +++   +     +  YNT ++E
Sbjct  345  VINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDI-----ETFYNTTVEE  398


 Score = 37.0 bits (84),  Expect = 0.70, Method: Compositional matrix adjust.
 Identities = 19/69 (28%), Positives = 37/69 (54%), Gaps = 0/69 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +M +   + + +    +  P+ IQ  +I   + G DV+  A++G+GKT  F+I ++Q 
Sbjct  35   FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ  94

Query  64   VYETLKDQQ  72
            +    K+ Q
Sbjct  95   LEIEFKETQ  103


>sp|Q5R4X1|IF4A2_PONAB Eukaryotic initiation factor 4A-II OS=Pongo 
abelii OX=9601 GN=EIF4A2 PE=2 SV=1
Length=407

 Score = 116 bits (291),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 107/359 (30%), Positives = 166/359 (46%), Gaps = 64/359 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGT  346
            +AL++ P+RELA+Q    I     Y+          IGG   R+++  L+     IVVGT
Sbjct  103  QALVLAPTRELAQQIQKVILALGDYMGATCHA---CIGGTNVRNEMQKLQAEAPHIVVGT  159

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGR+ D+++   L+   ++  VLDEAD +LS+G+ D I  +  ++         +QV++ 
Sbjct  160  PGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKL------NTSIQVVLL  213

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT+ + DV ++++K M  P  + +K E+   + +    + V        ER        
Sbjct  214  SATMPT-DVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINV--------ER--------  256

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                            E W   +  L   Y    I      QA+IF  T+   D L +  
Sbjct  257  ----------------EEWK--LDTLCDLYETLTIT-----QAVIFLNTRRKVDWLTEKM  293

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                         F+   LHGD    ER   +  F+ G  R LI TD+ ARGID+  V  
Sbjct  294  ---------HARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSL  344

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            VIN  LP  ++NY+HRIGR GR  R G+AI+ V  E +++   +     +  YNT ++E
Sbjct  345  VINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDI-----ETFYNTTVEE  398


 Score = 37.0 bits (84),  Expect = 0.70, Method: Compositional matrix adjust.
 Identities = 19/69 (28%), Positives = 37/69 (54%), Gaps = 0/69 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +M +   + + +    +  P+ IQ  +I   + G DV+  A++G+GKT  F+I ++Q 
Sbjct  35   FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ  94

Query  64   VYETLKDQQ  72
            +    K+ Q
Sbjct  95   LEIEFKETQ  103


>sp|P10630|IF4A2_MOUSE Eukaryotic initiation factor 4A-II OS=Mus 
musculus OX=10090 GN=Eif4a2 PE=1 SV=2
Length=407

 Score = 116 bits (291),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 107/359 (30%), Positives = 166/359 (46%), Gaps = 64/359 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGT  346
            +AL++ P+RELA+Q    I     Y+          IGG   R+++  L+     IVVGT
Sbjct  103  QALVLAPTRELAQQIQKVILALGDYMGATCHA---CIGGTNVRNEMQKLQAEAPHIVVGT  159

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGR+ D+++   L+   ++  VLDEAD +LS+G+ D I  +  ++         +QV++ 
Sbjct  160  PGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKL------NTSIQVVLL  213

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT+ + DV ++++K M  P  + +K E+   + +    + V        ER        
Sbjct  214  SATMPT-DVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINV--------ER--------  256

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                            E W   +  L   Y    I      QA+IF  T+   D L +  
Sbjct  257  ----------------EEWK--LDTLCDLYETLTIT-----QAVIFLNTRRKVDWLTEKM  293

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                         F+   LHGD    ER   +  F+ G  R LI TD+ ARGID+  V  
Sbjct  294  ---------HARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSL  344

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            VIN  LP  ++NY+HRIGR GR  R G+AI+ V  E +++   +     +  YNT ++E
Sbjct  345  VINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDI-----ETFYNTTVEE  398


 Score = 37.0 bits (84),  Expect = 0.70, Method: Compositional matrix adjust.
 Identities = 19/69 (28%), Positives = 37/69 (54%), Gaps = 0/69 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +M +   + + +    +  P+ IQ  +I   + G DV+  A++G+GKT  F+I ++Q 
Sbjct  35   FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ  94

Query  64   VYETLKDQQ  72
            +    K+ Q
Sbjct  95   LEIEFKETQ  103


>sp|Q14240|IF4A2_HUMAN Eukaryotic initiation factor 4A-II OS=Homo 
sapiens OX=9606 GN=EIF4A2 PE=1 SV=2
Length=407

 Score = 116 bits (291),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 107/359 (30%), Positives = 166/359 (46%), Gaps = 64/359 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGT  346
            +AL++ P+RELA+Q    I     Y+          IGG   R+++  L+     IVVGT
Sbjct  103  QALVLAPTRELAQQIQKVILALGDYMGATCHA---CIGGTNVRNEMQKLQAEAPHIVVGT  159

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGR+ D+++   L+   ++  VLDEAD +LS+G+ D I  +  ++         +QV++ 
Sbjct  160  PGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKL------NTSIQVVLL  213

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT+ + DV ++++K M  P  + +K E+   + +    + V        ER        
Sbjct  214  SATMPT-DVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINV--------ER--------  256

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                            E W   +  L   Y    I      QA+IF  T+   D L +  
Sbjct  257  ----------------EEWK--LDTLCDLYETLTIT-----QAVIFLNTRRKVDWLTEKM  293

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                         F+   LHGD    ER   +  F+ G  R LI TD+ ARGID+  V  
Sbjct  294  ---------HARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSL  344

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            VIN  LP  ++NY+HRIGR GR  R G+AI+ V  E +++   +     +  YNT ++E
Sbjct  345  VINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDI-----ETFYNTTVEE  398


 Score = 37.0 bits (84),  Expect = 0.70, Method: Compositional matrix adjust.
 Identities = 19/69 (28%), Positives = 37/69 (54%), Gaps = 0/69 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +M +   + + +    +  P+ IQ  +I   + G DV+  A++G+GKT  F+I ++Q 
Sbjct  35   FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ  94

Query  64   VYETLKDQQ  72
            +    K+ Q
Sbjct  95   LEIEFKETQ  103


>sp|Q3SZ65|IF4A2_BOVIN Eukaryotic initiation factor 4A-II OS=Bos 
taurus OX=9913 GN=EIF4A2 PE=2 SV=1
Length=407

 Score = 116 bits (291),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 107/359 (30%), Positives = 166/359 (46%), Gaps = 64/359 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGT  346
            +AL++ P+RELA+Q    I     Y+          IGG   R+++  L+     IVVGT
Sbjct  103  QALVLAPTRELAQQIQKVILALGDYMGATCHA---CIGGTNVRNEMQKLQAEAPHIVVGT  159

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGR+ D+++   L+   ++  VLDEAD +LS+G+ D I  +  ++         +QV++ 
Sbjct  160  PGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKL------NTSIQVVLL  213

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT+ + DV ++++K M  P  + +K E+   + +    + V        ER        
Sbjct  214  SATMPT-DVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINV--------ER--------  256

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                            E W   +  L   Y    I      QA+IF  T+   D L +  
Sbjct  257  ----------------EEWK--LDTLCDLYETLTIT-----QAVIFLNTRRKVDWLTEKM  293

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                         F+   LHGD    ER   +  F+ G  R LI TD+ ARGID+  V  
Sbjct  294  ---------HARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSL  344

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            VIN  LP  ++NY+HRIGR GR  R G+AI+ V  E +++   +     +  YNT ++E
Sbjct  345  VINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDI-----ETFYNTTVEE  398


 Score = 37.0 bits (84),  Expect = 0.70, Method: Compositional matrix adjust.
 Identities = 19/69 (28%), Positives = 37/69 (54%), Gaps = 0/69 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +M +   + + +    +  P+ IQ  +I   + G DV+  A++G+GKT  F+I ++Q 
Sbjct  35   FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ  94

Query  64   VYETLKDQQ  72
            +    K+ Q
Sbjct  95   LEIEFKETQ  103


>sp|Q8JFP1|IF4A2_CHICK Eukaryotic initiation factor 4A-II OS=Gallus 
gallus OX=9031 GN=EIF4A2 PE=2 SV=1
Length=407

 Score = 116 bits (291),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 107/359 (30%), Positives = 165/359 (46%), Gaps = 64/359 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGT  346
            +AL++ P+RELA+Q    I     Y+          IGG   R+++  L+     IVVGT
Sbjct  103  QALVLAPTRELAQQIQKVILALGDYMGATCHA---CIGGTNVRNEMQKLQAEAPHIVVGT  159

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGR+ D+++   L+   ++  VLDEAD +LS+G+ D I  +  ++         +QV++ 
Sbjct  160  PGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKL------STNIQVVLL  213

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT+   DV ++++K M  P  + +K E+   + +    + V        ER        
Sbjct  214  SATM-PMDVLEVTKKFMREPIRILVKKEELTLEGIKQFYINV--------ER--------  256

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                            E W   +  L   Y    I      QA+IF  T+   D L +  
Sbjct  257  ----------------EEWK--LDTLCDLYETLTIT-----QAVIFLNTRRKVDWLTEKM  293

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                         F+   LHGD    ER   +  F+ G  R LI TD+ ARGID+  V  
Sbjct  294  ---------HARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSL  344

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            VIN  LP  ++NY+HRIGR GR  R G+AI+ V  E +++   +     +  YNT ++E
Sbjct  345  VINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDI-----ETFYNTTVEE  398


 Score = 38.1 bits (87),  Expect = 0.28, Method: Compositional matrix adjust.
 Identities = 20/69 (29%), Positives = 38/69 (55%), Gaps = 0/69 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +M +   + + +    +  P+ IQ  +I   + G DV+  A++G+GKT  F+I ++Q 
Sbjct  35   FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ  94

Query  64   VYETLKDQQ  72
            +   LK+ Q
Sbjct  95   LEIDLKETQ  103


>sp|A5E058|PRP5_LODEL Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Lodderomyces elongisporus (strain ATCC 11503 
/ CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 
GN=PRP5 PE=3 SV=1
Length=994

 Score = 120 bits (300),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 160/344 (47%), Gaps = 54/344 (16%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P  L++ P+RELA Q    I +F   +D   L+     GG    +Q+S L+ GV+++V T
Sbjct  462  PIGLVLSPTRELALQIEKEILKFSSTMD---LKVCCCYGGSNIENQISELKRGVNVIVAT  518

Query  347  PGRLDDLVST--GKL-NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            PGRL DL++   G++  L +  F+VLDEAD +   G+   I ++  QI          Q 
Sbjct  519  PGRLIDLLAANGGRITTLRRTTFVVLDEADRMFDMGFEPQIQKIFTQIRPDK------QT  572

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            ++ SAT     +++L++K++H P  + + G   V   +   ++        L+E      
Sbjct  573  VLFSATFPR-KLEQLAKKVLHNPIEIIVGGVSVVASEISQEII--------LFE------  617

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                            ++ ++ +  I+ L+   +          + ++F   + D D L 
Sbjct  618  ----------------DTDQLMNHKIQKLEDILSRFFDLGKNTGKVLVFVEKQTDADKLV  661

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK--KGDVRFLICTDVAARGIDI  581
               +++            C+ +HG +   +RK  +  F   +  +  LI T +AARG+D+
Sbjct  662  SVLLKKA---------IPCIAIHGGKDQIDRKHAIREFSDDQSGINVLIATSIAARGLDV  712

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
              +  V+N   P   ++YVHR+GR GRA + G AI+ V   +EK
Sbjct  713  RNLDLVVNFEPPSHLEDYVHRVGRTGRAGKHGEAITFVDNTQEK  756


 Score = 47.8 bits (112),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 42/62 (68%), Gaps = 2/62 (3%)

Query  9    VMPEIAQAVEEMD--WLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYE  66
            +MPE   +V + D  +  P+ IQ ++IP++L G D++  A+TGSGKT ++ +P+++ + +
Sbjct  393  LMPESVMSVIQNDLGFAKPSPIQCQAIPIVLSGRDMIGVAKTGSGKTLSYVLPMVRHIQD  452

Query  67   TL  68
             L
Sbjct  453  QL  454


>sp|P0CQ74|DED1_CRYNJ ATP-dependent RNA helicase ded1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=DED1 PE=3 SV=1
Length=637

 Score = 119 bits (298),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 147/334 (44%), Gaps = 58/334 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P AL++ P+REL  Q     ++ +K+     +R  ++ GG     Q+  L+ G D++  T
Sbjct  248  PTALVLAPTRELVSQIH---EEARKFAYRSWVRPAVVYGGADIGSQMRALDRGCDLLSAT  304

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ--IPQVTSDGKRLQVI  404
            PGRL DL+  GK++L+ V++LVLDEAD +L  G+   I R+ ++  +P V       Q +
Sbjct  305  PGRLVDLIERGKISLANVKYLVLDEADRMLDMGFEPQIRRIVDEEDMPGVLER----QTL  360

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT               FP  +       + + +   V  V   ++ + +R+   ++
Sbjct  361  MFSAT---------------FPREIQNLARSFLKEYIFLTVGRVGSTSENITQRV--EYV  403

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
               D  +       A                       E      ++F  TK   D L  
Sbjct  404  DDQDKRSLLLDLLLA-----------------------EQSGGLILVFVETKRMADTLCD  440

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
            +   +         + +   +HGDR   ER+  L  FK G    L+ T VAARG+DI  V
Sbjct  441  FLCSR---------RHNATSIHGDRTQREREAALYAFKSGRAPILVATAVAARGLDIPNV  491

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
             +VI   LP++   Y HRIGR GRA  +G + + 
Sbjct  492  THVILYDLPNDVAEYTHRIGRTGRAGNVGTSTAF  525


 Score = 49.3 bits (116),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 21/62 (34%), Positives = 37/62 (60%), Gaps = 0/62 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+   + P + + V+   +  PT +Q  SIP++  G D++  A+TGSGKTG F  P++  
Sbjct  162  FTNPPINPVLLENVKYARYATPTPVQKYSIPIVADGRDLMACAQTGSGKTGGFLFPILSA  221

Query  64   VY  65
            ++
Sbjct  222  LF  223


>sp|P0CQ75|DED1_CRYNB ATP-dependent RNA helicase ded1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=DED1 PE=3 SV=1
Length=637

 Score = 119 bits (298),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 147/334 (44%), Gaps = 58/334 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P AL++ P+REL  Q     ++ +K+     +R  ++ GG     Q+  L+ G D++  T
Sbjct  248  PTALVLAPTRELVSQIH---EEARKFAYRSWVRPAVVYGGADIGSQMRALDRGCDLLSAT  304

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ--IPQVTSDGKRLQVI  404
            PGRL DL+  GK++L+ V++LVLDEAD +L  G+   I R+ ++  +P V       Q +
Sbjct  305  PGRLVDLIERGKISLANVKYLVLDEADRMLDMGFEPQIRRIVDEEDMPGVLER----QTL  360

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT               FP  +       + + +   V  V   ++ + +R+   ++
Sbjct  361  MFSAT---------------FPREIQNLARSFLKEYIFLTVGRVGSTSENITQRV--EYV  403

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
               D  +       A                       E      ++F  TK   D L  
Sbjct  404  DDQDKRSLLLDLLLA-----------------------EQSGGLILVFVETKRMADTLCD  440

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
            +   +         + +   +HGDR   ER+  L  FK G    L+ T VAARG+DI  V
Sbjct  441  FLCSR---------RHNATSIHGDRTQREREAALYAFKSGRAPILVATAVAARGLDIPNV  491

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
             +VI   LP++   Y HRIGR GRA  +G + + 
Sbjct  492  THVILYDLPNDVAEYTHRIGRTGRAGNVGTSTAF  525


 Score = 49.3 bits (116),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 21/62 (34%), Positives = 37/62 (60%), Gaps = 0/62 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+   + P + + V+   +  PT +Q  SIP++  G D++  A+TGSGKTG F  P++  
Sbjct  162  FTNPPINPVLLENVKYARYATPTPVQKYSIPIVADGRDLMACAQTGSGKTGGFLFPILSA  221

Query  64   VY  65
            ++
Sbjct  222  LF  223


>sp|Q9Y7T7|PRP28_SCHPO Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Schizosaccharomyces pombe (strain 972 / ATCC 
24843) OX=284812 GN=prp28 PE=3 SV=1
Length=662

 Score = 119 bits (297),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 98/368 (27%), Positives = 159/368 (43%), Gaps = 66/368 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P A+++ P+RELA+Q      +F + +     R + ++GG A  +Q   +  G  IVV T
Sbjct  326  PYAVVLAPTRELAQQIQVEGNKFAEPLG---FRCVSVVGGHAFEEQSFQMSQGAHIVVAT  382

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ-------------  393
            PGRL D +      LSQ  ++V+DEAD +L  G+ D +N++ + +P              
Sbjct  383  PGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSILAT  442

Query  394  VTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTD  453
              S   R Q I+ SATL               P  V    +  + + V   +  +    D
Sbjct  443  ANSSSSRRQTIMFSATL---------------PPRVANLAKSYLIEPVMLTIGNIGQAVD  487

Query  454  RLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFC  513
            R+ +R+    + +DD              + W    +IL+       I        IIF 
Sbjct  488  RVEQRV---EMISDD-------------SKKWRRVEEILESNRFSPPI--------IIFV  523

Query  514  RTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTD  573
              K + + + +     G         +  V LHG +   +R++ +E+ +      L+ TD
Sbjct  524  NLKRNIEAIAKQLNAIG---------WHAVTLHGSKSQEQRERAIEQLRNKTADILVATD  574

Query  574  VAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY--HVC  631
            +A RGIDI  V  V+N  +    ++Y HRIGR GRA + G AI+ +  E   V+Y   V 
Sbjct  575  IAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGPEDTDVYYDLRVL  634

Query  632  SSRGKGCY  639
             SR    +
Sbjct  635  LSRSAKAH  642


 Score = 50.1 bits (118),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 23/58 (40%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + E G+  E+ + ++++++  P+ IQ  +IP++L   D++  AETGSGKT AF IP+I
Sbjct  251  WEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLI  308


>sp|Q0V1Z7|DRS1_PHANO ATP-dependent RNA helicase DRS1 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=DRS1 PE=3 SV=1
Length=808

 Score = 119 bits (299),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 153/353 (43%), Gaps = 58/353 (16%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +  I  P+RELA Q  N   +   + D   +   L+ GG ++R+Q  +L+   D+V+ TP
Sbjct  358  RVAIFMPTRELAVQCFNVATKLASFTD---ITFALLAGGFSSREQEVMLKTRPDVVIATP  414

Query  348  GR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            GR +D + +T    +  +  LVLDEAD +L +G+   +N +   IP      K  Q ++ 
Sbjct  415  GRFIDHMHNTAAFQVEHLEILVLDEADRMLEEGFETQLNEILTTIP------KSRQTMLF  468

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT+ S  V KL    M  P  +       + D   H V  +  +  RL  R GK   R 
Sbjct  469  SATMTST-VDKLIRIGMDKPVRL-------MVDAKKHTVKGLTQEFIRL--RQGKEDKRL  518

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                                         Y +   ++   ++ IIF R K +   +   F
Sbjct  519  ----------------------------AYLMYICEKIYTERVIIFFRQKKEAHRVRVVF  550

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
               G              LHG+    +R Q +E F+ G   +L+ TDVA+RG+DI  V  
Sbjct  551  ALCG---------LKASELHGNMSQEQRIQAVEAFRSGKSSYLLATDVASRGLDIKNVST  601

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH-VCSSRGKGC  638
            VIN   P   + Y+HR+GR  RA R G A +L A    KV    V  SR +G 
Sbjct  602  VINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKQAVKQSRDQGS  654


 Score = 53.1 bits (126),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 40/62 (65%), Gaps = 0/62 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F  M +   I + +  + +  PT IQA++IP+ + G DV+  AETGSGKT AF IP+
Sbjct  284  IGSFHAMSLSRPIQKGLAAIGFTEPTPIQAKAIPIAMQGKDVVGGAETGSGKTAAFLIPI  343

Query  61   IQ  62
            ++
Sbjct  344  LE  345


>sp|Q4TVV3|DDX46_DANRE Probable ATP-dependent RNA helicase DDX46 
OS=Danio rerio OX=7955 GN=ddx46 PE=2 SV=1
Length=1018

 Score = 119 bits (299),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 157/338 (46%), Gaps = 65/338 (19%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P A+I+ P+RELA Q     K+F K +    LR + + GG    +Q++ L+ G +I+V T
Sbjct  414  PLAVIMTPTRELALQITKECKKFSKSL---ALRVVCVYGGTGISEQIAELKRGAEIIVCT  470

Query  347  PGRLDDLV--STGKL-NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            PGR+ D++  + G++ NL +V ++V+DEAD +   G+   + R+   +  V  D    Q 
Sbjct  471  PGRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQVMRI---VDNVRPD---RQT  524

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV--HHVVVPVNPKTDRLWERLGK  461
            ++ SAT     ++ L+ +I+  P  V + G   V   V  H +V+    K  +L E LG 
Sbjct  525  VMFSATFPR-TMEALARRILSKPVEVQVGGRSVVCSDVEQHVIVIEEEKKFLKLLEILG-  582

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
                    H ++                   KG               IIF   +   D 
Sbjct  583  --------HYQE-------------------KG-------------SVIIFVDKQEHADG  602

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            L +  ++           + C+ LHG    ++R   +  FK G  R L+ T VAARG+D+
Sbjct  603  LLKDLMKAS---------YPCMSLHGGIDQYDRDSIINDFKNGACRLLVATSVAARGLDV  653

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
              +  V+N + P+  ++YVHR GR GRA   G A + +
Sbjct  654  KQLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFI  691


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 39/55 (71%), Gaps = 0/55 (0%)

Query  8    GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            G+  ++  A+++ ++  PT IQA++IP I+ G D++  A+TGSGKT AF +P+ +
Sbjct  346  GISMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFR  400


>sp|A1D8G1|DHH1_NEOFI ATP-dependent RNA helicase dhh1 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dhh1 
PE=3 SV=1
Length=507

 Score = 117 bits (293),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 102/368 (28%), Positives = 161/368 (44%), Gaps = 73/368 (20%)

Query  258  LSKAPDG------YIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKK  311
            L++A +G      +++ +    N + T+T+       ALI+ P+RELA QT    K   K
Sbjct  88   LARAKNGTGKTAAFVIPTLERINPKSTKTQ-------ALILVPTRELALQTSQVCKTLGK  140

Query  312  YIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDE  371
            ++    +  ++  GG    D +  L + V I+VGTPGR+ DL S G  +LS+    V+DE
Sbjct  141  HLG---INVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDE  197

Query  372  ADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL  431
            AD LLS  ++  I ++ +  P      K  QV++ SAT     VK   +K M        
Sbjct  198  ADKLLSPEFTPVIEQLLSFHP------KDRQVMLFSATF-PLIVKSFKDKHMR-------  243

Query  432  KGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
                             NP    L + L    I       ++             + +  
Sbjct  244  -----------------NPYEINLMDELTLRGITQYYAFVEE------------KQKVHC  274

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
            L   ++     + +++Q+IIFC +    + L +   + G         +SC   H     
Sbjct  275  LNTLFS-----KLQINQSIIFCNSTNRVELLAKKITELG---------YSCFYSHARMLQ  320

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
              R +    F+ G  R L+C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR   
Sbjct  321  QHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGH  380

Query  612  MGLAISLV  619
            +GLAI+L+
Sbjct  381  LGLAINLI  388


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 0/61 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +  +  E+   + E  +  P+ IQ E+IP+ L G D+L  A+ G+GKT AF IP ++ 
Sbjct  49   FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER  108

Query  64   V  64
            +
Sbjct  109  I  109


>sp|A7EGG4|PRP28_SCLS1 Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 
1980 / Ss-1) OX=665079 GN=prp28 PE=3 SV=1
Length=816

 Score = 119 bits (298),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 162/356 (46%), Gaps = 52/356 (15%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P A+I+ P+RELA+Q     K+F   +       + I+GG +  +Q   L NG +I++
Sbjct  454  DGPYAIILAPTRELAQQIEVEAKKFATPLG---FTCVSIVGGHSLEEQSYNLRNGAEIII  510

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D +    L L Q  ++++DEAD ++  G+ + +N++ + +P            
Sbjct  511  ATPGRLVDCIERRVLVLGQCCYIIMDEADRMIDLGFEESVNKILDALP------------  558

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            V +    + D +       H      L G+D    T+ +    + P      E++ K ++
Sbjct  559  VSNEKPDTDDAEDAQAMSRH------LGGKDRYRQTMMYTAT-MPPAV----EKIAKKYL  607

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA----------IIFCR  514
            R   +    N      + E   + ++ + GE      ++ ++++           I+F  
Sbjct  608  RRPAIVTIGNI---GEAVETVEQRVEFVAGEDK----RKKRLNEILASGEFQPPIIVFVN  660

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
             K +CD + +         D K   F+ V LHG +   +R+  L   + G    L+ TD+
Sbjct  661  IKRNCDAVAR---------DIKHMGFTSVTLHGSKTQEQREAALASVRSGATNVLVATDL  711

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
            A RGID+  V  V+N  +    ++Y HRIGR GRA + G+AI+ +  E     Y +
Sbjct  712  AGRGIDVPDVSLVVNFNMATNIESYTHRIGRTGRAGKSGVAITFLGNEDADTMYDL  767


 Score = 42.0 bits (97),  Expect = 0.021, Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 38/66 (58%), Gaps = 0/66 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M ++SE  +   +   + ++ +  P+ +Q  +IP+ L   D++  A TGSGKT AF +P+
Sbjct  378  MRSWSESKLPKRLLDVINQVGYDEPSAVQRAAIPIALQARDLIGVAVTGSGKTAAFLLPL  437

Query  61   IQIVYE  66
            +  + E
Sbjct  438  LVYISE  443


>sp|A1CYG5|DBP5_NEOFI ATP-dependent RNA helicase dbp5 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp5 
PE=3 SV=1
Length=489

 Score = 117 bits (292),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 122/485 (25%), Positives = 200/485 (41%), Gaps = 118/485 (24%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            KN +DLGL   I   + N        ++   L           PPK+  V  S++  G  
Sbjct  77   KNFEDLGLDPRILKGLSNMNFRKPSKIQERALPLLLNN-----PPKN-LVGQSQSGTGKT  130

Query  267  VKSQHSGNAQV-TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
                 +  ++V   T+ +   P+ALI+ P+RELA Q L  ++   +++D       LIIG
Sbjct  131  AAFVLNALSRVDLSTEQMQKTPQALILAPTRELARQILGVVQVMGQFVDG------LIIG  184

Query  326  GVAARDQLSVLEN-GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDF  383
                 D+ S  +     IVVGTPG + D++       ++++ LVLDEAD +L  QG  D 
Sbjct  185  AAVPTDRDSRPKRLECSIVVGTPGTVGDMIKRRTFIPNKLKVLVLDEADNMLDQQGLGDQ  244

Query  384  INRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHH  443
              R+   +P      + +QV++ SAT                            P+ VH 
Sbjct  245  CIRVKALLP------RDIQVVLFSATF---------------------------PEHVHQ  271

Query  444  VVVPVNPKTDRLW---ERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRA  500
                  P  + +    E L    I+   +   D             +  K L   Y +  
Sbjct  272  YASKFAPNANEITLQHEELTVEGIKQLYLDCADG-----------EDKYKTLVQLYGLLT  320

Query  501  IKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLER  560
            +       +IIF +T+     +E+    +G          + V L G+R P  R   +++
Sbjct  321  VGS-----SIIFVQTRAAAQEIEKRMTAEG---------HTVVSLTGERDPSVRDAIIDQ  366

Query  561  FKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD-----------EKQNYVHRIGRVGRA  609
            F++G+ + LI T+V ARGID+  V  VIN  +P+           + Q Y+HRIGR GR 
Sbjct  367  FRRGEAKVLIATNVLARGIDVSTVSMVINYDIPELHQPSVPGRQADFQTYLHRIGRTGRF  426

Query  610  ERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCT  669
             R+G++IS V+  +E  W                             ++L++I+ + NC 
Sbjct  427  GRVGVSISFVSNREE--W-----------------------------EMLNQIQTYFNCE  455

Query  670  ISQVE  674
            I +V+
Sbjct  456  IQRVD  460


 Score = 38.9 bits (89),  Expect = 0.17, Method: Compositional matrix adjust.
 Identities = 17/57 (30%), Positives = 36/57 (63%), Gaps = 2/57 (4%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            F ++G+ P I + +  M++  P+ IQ  ++PL+L     +++  +++G+GKT AF +
Sbjct  79   FEDLGLDPRILKGLSNMNFRKPSKIQERALPLLLNNPPKNLVGQSQSGTGKTAAFVL  135


>sp|A1D405|RRP3_NEOFI ATP-dependent rRNA helicase rrp3 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=rrp3 
PE=3 SV=1
Length=472

 Score = 117 bits (292),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 102/364 (28%), Positives = 157/364 (43%), Gaps = 59/364 (16%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P +   LI+ P+RELA Q   + +     I+   +R  +I+GG+    Q   L     I+
Sbjct  118  PQSFFGLILAPTRELAFQISKSFESLGSTIN---VRCAVIVGGMDMVSQSIALGKKPHII  174

Query  344  VGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            V TPGRL D L +T   +L  +++LV+DEAD LL   +   ++++   +P      +  +
Sbjct  175  VATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLP------RERR  228

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
              + SAT+ S  V+ L    +  P  V      SV    +  V             L +S
Sbjct  229  TFLFSATMSS-KVESLQRASLSNPLRV------SVSSNKYQTV-----------STLLQS  270

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
            ++     H                      K  Y V  + E     AIIF RT  +   +
Sbjct  271  YLFLPHKH----------------------KDIYLVYLLNEFVGQSAIIFTRTVHETQRI  308

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
               F+ +  G       F  + LHG      R   L +F+      L+ TDVAARG+DI 
Sbjct  309  S--FLLRSLG-------FGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIP  359

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTR  642
             V  V+N  LP + + YVHR+GR  RA + G+AIS V     ++W  +  + GK      
Sbjct  360  SVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWLRIEGALGKKLKEYE  419

Query  643  LKED  646
            L++D
Sbjct  420  LEKD  423


 Score = 70.1 bits (170),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 47/64 (73%), Gaps = 0/64 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F ++G++ ++ +A E M +  PT IQAESIPL L G D++  AETGSGKT AF++P++Q
Sbjct  53   SFKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQ  112

Query  63   IVYE  66
             + E
Sbjct  113  ALME  116


>sp|Q4R8K5|IF4A1_MACFA Eukaryotic initiation factor 4A-I OS=Macaca 
fascicularis OX=9541 GN=EIF4A1 PE=2 SV=1
Length=406

 Score = 115 bits (289),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 113/398 (28%), Positives = 180/398 (45%), Gaps = 65/398 (16%)

Query  249  FPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQ  308
             P   G+  +++A  G   K+     + + Q +    A +AL++ P+RELA+Q    +  
Sbjct  64   LPCIKGYDVIAQAQSG-TGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMA  122

Query  309  FKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGTPGRLDDLVSTGKLNLSQVRFL  367
               Y+          IGG   R ++  L+     I+VGTPGR+ D+++   L+   ++  
Sbjct  123  LGDYMGASCHA---CIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMF  179

Query  368  VLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPT  427
            VLDEAD +LS+G+ D I  +  ++   T      QV++ SAT+ S DV ++++K M  P 
Sbjct  180  VLDEADEMLSRGFKDQIYDIFQKLNSNT------QVVLLSATMPS-DVLEVTKKFMRDPI  232

Query  428  WVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSE  487
             + +K E+   + +    + V        ER                        E W  
Sbjct  233  RILVKKEELTLEGIRQFYINV--------ER------------------------EEWK-  259

Query  488  AIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHG  547
             +  L   Y    I      QA+IF  T+   D L +               F+   +HG
Sbjct  260  -LDTLCDLYETLTIT-----QAVIFINTRRKVDWLTEKM---------HARDFTASAMHG  304

Query  548  DRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVG  607
            D    ER   +  F+ G  R LI TD+ ARGID+  V  VIN  LP  ++NY+HRIGR G
Sbjct  305  DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG  364

Query  608  RAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            R  R G+AI++V  E ++    +     +  YNT ++E
Sbjct  365  RFGRKGVAINMVTEEDKRTLRDI-----ETFYNTSIEE  397


 Score = 38.1 bits (87),  Expect = 0.24, Method: Compositional matrix adjust.
 Identities = 20/70 (29%), Positives = 38/70 (54%), Gaps = 0/70 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F +M +   + + +    +  P+ IQ  +I   + G DV+  A++G+GKT  F+I ++Q
Sbjct  33   SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ  92

Query  63   IVYETLKDQQ  72
             +   LK  Q
Sbjct  93   QIELDLKATQ  102


>sp|P60843|IF4A1_MOUSE Eukaryotic initiation factor 4A-I OS=Mus 
musculus OX=10090 GN=Eif4a1 PE=1 SV=1
Length=406

 Score = 115 bits (289),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 113/398 (28%), Positives = 180/398 (45%), Gaps = 65/398 (16%)

Query  249  FPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQ  308
             P   G+  +++A  G   K+     + + Q +    A +AL++ P+RELA+Q    +  
Sbjct  64   LPCIKGYDVIAQAQSG-TGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMA  122

Query  309  FKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGTPGRLDDLVSTGKLNLSQVRFL  367
               Y+          IGG   R ++  L+     I+VGTPGR+ D+++   L+   ++  
Sbjct  123  LGDYMGASCHA---CIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMF  179

Query  368  VLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPT  427
            VLDEAD +LS+G+ D I  +  ++   T      QV++ SAT+ S DV ++++K M  P 
Sbjct  180  VLDEADEMLSRGFKDQIYDIFQKLNSNT------QVVLLSATMPS-DVLEVTKKFMRDPI  232

Query  428  WVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSE  487
             + +K E+   + +    + V        ER                        E W  
Sbjct  233  RILVKKEELTLEGIRQFYINV--------ER------------------------EEWK-  259

Query  488  AIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHG  547
             +  L   Y    I      QA+IF  T+   D L +               F+   +HG
Sbjct  260  -LDTLCDLYETLTIT-----QAVIFINTRRKVDWLTEKM---------HARDFTVSAMHG  304

Query  548  DRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVG  607
            D    ER   +  F+ G  R LI TD+ ARGID+  V  VIN  LP  ++NY+HRIGR G
Sbjct  305  DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG  364

Query  608  RAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            R  R G+AI++V  E ++    +     +  YNT ++E
Sbjct  365  RFGRKGVAINMVTEEDKRTLRDI-----ETFYNTSIEE  397


 Score = 38.5 bits (88),  Expect = 0.24, Method: Compositional matrix adjust.
 Identities = 20/70 (29%), Positives = 38/70 (54%), Gaps = 0/70 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F +M +   + + +    +  P+ IQ  +I   + G DV+  A++G+GKT  F+I ++Q
Sbjct  33   SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ  92

Query  63   IVYETLKDQQ  72
             +   LK  Q
Sbjct  93   QIELDLKATQ  102


>sp|P60842|IF4A1_HUMAN Eukaryotic initiation factor 4A-I OS=Homo 
sapiens OX=9606 GN=EIF4A1 PE=1 SV=1
Length=406

 Score = 115 bits (289),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 113/398 (28%), Positives = 180/398 (45%), Gaps = 65/398 (16%)

Query  249  FPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQ  308
             P   G+  +++A  G   K+     + + Q +    A +AL++ P+RELA+Q    +  
Sbjct  64   LPCIKGYDVIAQAQSG-TGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMA  122

Query  309  FKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGTPGRLDDLVSTGKLNLSQVRFL  367
               Y+          IGG   R ++  L+     I+VGTPGR+ D+++   L+   ++  
Sbjct  123  LGDYMGASCHA---CIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMF  179

Query  368  VLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPT  427
            VLDEAD +LS+G+ D I  +  ++   T      QV++ SAT+ S DV ++++K M  P 
Sbjct  180  VLDEADEMLSRGFKDQIYDIFQKLNSNT------QVVLLSATMPS-DVLEVTKKFMRDPI  232

Query  428  WVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSE  487
             + +K E+   + +    + V        ER                        E W  
Sbjct  233  RILVKKEELTLEGIRQFYINV--------ER------------------------EEWK-  259

Query  488  AIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHG  547
             +  L   Y    I      QA+IF  T+   D L +               F+   +HG
Sbjct  260  -LDTLCDLYETLTIT-----QAVIFINTRRKVDWLTEKM---------HARDFTVSAMHG  304

Query  548  DRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVG  607
            D    ER   +  F+ G  R LI TD+ ARGID+  V  VIN  LP  ++NY+HRIGR G
Sbjct  305  DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG  364

Query  608  RAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            R  R G+AI++V  E ++    +     +  YNT ++E
Sbjct  365  RFGRKGVAINMVTEEDKRTLRDI-----ETFYNTSIEE  397


 Score = 38.5 bits (88),  Expect = 0.24, Method: Compositional matrix adjust.
 Identities = 20/70 (29%), Positives = 38/70 (54%), Gaps = 0/70 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F +M +   + + +    +  P+ IQ  +I   + G DV+  A++G+GKT  F+I ++Q
Sbjct  33   SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ  92

Query  63   IVYETLKDQQ  72
             +   LK  Q
Sbjct  93   QIELDLKATQ  102


>sp|Q3SZ54|IF4A1_BOVIN Eukaryotic initiation factor 4A-I OS=Bos 
taurus OX=9913 GN=EIF4A1 PE=2 SV=1
Length=406

 Score = 115 bits (289),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 113/398 (28%), Positives = 180/398 (45%), Gaps = 65/398 (16%)

Query  249  FPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQ  308
             P   G+  +++A  G   K+     + + Q +    A +AL++ P+RELA+Q    +  
Sbjct  64   LPCIKGYDVIAQAQSG-TGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMA  122

Query  309  FKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGTPGRLDDLVSTGKLNLSQVRFL  367
               Y+          IGG   R ++  L+     I+VGTPGR+ D+++   L+   ++  
Sbjct  123  LGDYMGASCHA---CIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMF  179

Query  368  VLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPT  427
            VLDEAD +LS+G+ D I  +  ++   T      QV++ SAT+ S DV ++++K M  P 
Sbjct  180  VLDEADEMLSRGFKDQIYDIFQKLNSNT------QVVLLSATMPS-DVLEVTKKFMRDPI  232

Query  428  WVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSE  487
             + +K E+   + +    + V        ER                        E W  
Sbjct  233  RILVKKEELTLEGIRQFYINV--------ER------------------------EEWK-  259

Query  488  AIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHG  547
             +  L   Y    I      QA+IF  T+   D L +               F+   +HG
Sbjct  260  -LDTLCDLYETLTIT-----QAVIFINTRRKVDWLTEKM---------HARDFTVSAMHG  304

Query  548  DRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVG  607
            D    ER   +  F+ G  R LI TD+ ARGID+  V  VIN  LP  ++NY+HRIGR G
Sbjct  305  DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG  364

Query  608  RAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            R  R G+AI++V  E ++    +     +  YNT ++E
Sbjct  365  RFGRKGVAINMVTEEDKRTLRDI-----ETFYNTSIEE  397


 Score = 38.5 bits (88),  Expect = 0.24, Method: Compositional matrix adjust.
 Identities = 20/70 (29%), Positives = 38/70 (54%), Gaps = 0/70 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F +M +   + + +    +  P+ IQ  +I   + G DV+  A++G+GKT  F+I ++Q
Sbjct  33   SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ  92

Query  63   IVYETLKDQQ  72
             +   LK  Q
Sbjct  93   QIELDLKATQ  102


>sp|O34750|YFML_BACSU Probable ATP-dependent RNA helicase YfmL 
OS=Bacillus subtilis (strain 168) OX=224308 GN=yfmL PE=1 SV=1
Length=376

 Score = 115 bits (287),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 157/338 (46%), Gaps = 61/338 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+A+I+ PSREL  Q    I+ +K      +LR   +IGG   + Q+  L+    I+VGT
Sbjct  73   PQAVILAPSRELVMQIFQVIQDWKA---GSELRAASLIGGANVKKQVEKLKKHPHIIVGT  129

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGR+ +L+   KL + +V+ +VLDE D L+   + + + ++      + +  +  Q++  
Sbjct  130  PGRVFELIKAKKLKMHEVKTIVLDETDQLVLPEHRETMKQI------IKTTLRDRQLLCF  183

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SATL     KK +E ++      +L  E   P+ +         K  R     GK   + 
Sbjct  184  SATL-----KKETEDVLR-----ELAQE---PEVL---------KVQRSKAEAGKVKHQY  221

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                 +D               +K+L+    +  +      QA++F R   D  NL  Y 
Sbjct  222  LICDQRDK--------------VKLLQKLSRLEGM------QALVFVR---DIGNLSVY-  257

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                       H      LH + K  ER + +  F+ G+   L+ TD+AARG+DI  +PY
Sbjct  258  -----AEKLAYHHVELGVLHSEAKKMERAKIIATFEDGEFPLLLATDIAARGLDIENLPY  312

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            VI+  +PDE   YVHR GR GRA + G  +SLV   +E
Sbjct  313  VIHADIPDE-DGYVHRSGRTGRAGKEGNVLSLVTKLEE  349


 Score = 40.4 bits (93),  Expect = 0.048, Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 28/38 (74%), Gaps = 0/38 (0%)

Query  25  PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           PT +Q ++  LI+ G DV+  + TG+GKT A+++PV++
Sbjct  27  PTPVQEQAAQLIMDGKDVIAESPTGTGKTLAYALPVLE  64


>sp|Q2HGF7|DBP5_CHAGB ATP-dependent RNA helicase DBP5 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=DBP5 PE=3 SV=1
Length=479

 Score = 116 bits (291),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 117/408 (29%), Positives = 182/408 (45%), Gaps = 89/408 (22%)

Query  238  LKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN-----------AQVTQTKFLPNA  286
            L  NF ++  K   K   + LS  P   I +SQ SG            ++V  TK  P  
Sbjct  88   LAMNF-KKPSKIQEKALPLMLSNPPRNMIAQSQ-SGTGKTAAFVLTVLSRVDLTK--PTQ  143

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGV--DIVV  344
            P+AL++ PSRELA Q  + I+   ++ +N  + E  I G ++        E GV  ++VV
Sbjct  144  PQALLLAPSRELARQIQSVIQTIGQFCENLNV-EAAIPGSISR-------ETGVRANVVV  195

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQV  403
            GTPG + DL+   + ++SQ++ +V+DEAD +L  QG  D   R+   +P      K +Q 
Sbjct  196  GTPGTVMDLIRRRQFDVSQLKIMVIDEADNMLDQQGMGDQCVRVKGMLP------KDIQT  249

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            ++ SAT          EK+M F                H +                   
Sbjct  250  LLFSAT--------FPEKVMIFAR--------KYATNAHEI------------------K  275

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
            +R  D+  K  ++   + P+  S+   IL   Y +  I       ++IF RT+     ++
Sbjct  276  LRHTDLTVKGISQMYMDCPD-ESKKYDILCKLYGLMTIG-----SSVIFVRTRESASEIQ  329

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
            +         +  GH+ S   LHG  +   R   L+ F+ G  + LI T+V ARGID+  
Sbjct  330  RRM-------EADGHKVS--ALHGAHEGQNRDALLDDFRSGRSKVLITTNVLARGIDVSS  380

Query  584  VPYVINVTLP--------DEKQNYVHRIGRVGRAERMGLAISLVATEK  623
            V  VIN  +P         + + Y+HRIGR GR  R+G++IS V   K
Sbjct  381  VSMVINYDIPMKGPGDKEPDMETYLHRIGRTGRFGRVGVSISFVYDRK  428


 Score = 40.8 bits (94),  Expect = 0.047, Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGG--DVLMAAETGSGKTGAFSI  58
            +A+F E+G+   I   +  M++  P+ IQ +++PL+L     +++  +++G+GKT AF +
Sbjct  71   VASFEELGLAKSINDGLLAMNFKKPSKIQEKALPLMLSNPPRNMIAQSQSGTGKTAAFVL  130

Query  59   PVIQIV  64
             V+  V
Sbjct  131  TVLSRV  136


>sp|A7ESL7|DBP10_SCLS1 ATP-dependent RNA helicase dbp10 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=dbp10 PE=3 SV=2
Length=920

 Score = 119 bits (298),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 105/337 (31%), Positives = 158/337 (47%), Gaps = 34/337 (10%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ PSRELA QTL  +K+F +  D   L+ +L++GG +  +Q   +    DIV+ TP
Sbjct  160  RALIMSPSRELALQTLKVVKEFGRGTD---LKCVLLVGGDSLEEQFGFMAANPDIVIATP  216

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR   L     L+LS ++++V DEAD L   G++  +  + + +P         Q ++ S
Sbjct  217  GRFLHLKVEMSLDLSSMKYVVFDEADRLFEMGFAAQLGEILHALPISR------QTLLFS  270

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS-HIRT  466
            ATL    V+  +   +  P+ V L  E  V   +      V     +  E+ G   HI  
Sbjct  271  ATLPKSLVE-FARAGLQEPSLVRLDAESKVSPDLQSAFFSV-----KGAEKEGALLHILQ  324

Query  467  DDVHAKDNTRPGA-NSPEMWSEAIKILKG-EYAVRAIK--EHKMDQAIIFCRTKIDCDNL  522
            D V         A N+ + +S+  K  +G +   + +K  EH     IIF  TK   D L
Sbjct  325  DLVKMPTGLPENALNATDNFSKKRK--RGPDGPTKKLKPTEH---STIIFAATKHHVDYL  379

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
                   G         F+    +G      R   +E F+ G    L+ TDVAARGIDI 
Sbjct  380  ASLLRMSG---------FAVSHAYGSLDQTARNIQVEDFRTGKSNILVVTDVAARGIDIP  430

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
             +  VIN   P + + +VHR+GR  RA + G + SLV
Sbjct  431  VLANVINYDFPPQPKVFVHRVGRTARAGQRGWSYSLV  467


 Score = 55.5 bits (132),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  MG+   + +A+    + +PT IQ ++IPL+L   DV+  A TGSGKT AF IP+I+
Sbjct  90   FQAMGLNSHLLKAISRKGFNVPTPIQRKTIPLVLDNQDVVGMARTGSGKTAAFVIPMIE  148


>sp|Q53RK8|RH21_ORYSJ DEAD-box ATP-dependent RNA helicase 21 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os03g0708600 PE=2 
SV=1
Length=736

 Score = 118 bits (296),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 159/348 (46%), Gaps = 50/348 (14%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P A+++ P+RELA+Q      +F  Y+    ++ + I+GG +  +Q   +  G ++V+ T
Sbjct  392  PYAVVMAPTRELAQQIEEETVKFATYLG---IKVVSIVGGQSIEEQGFKIRQGCEVVIAT  448

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL D +      L+Q  ++VLDEAD ++  G+           PQV      L  +  
Sbjct  449  PGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFE----------PQVVG---VLDAMPS  495

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            S      + ++L  K ++  T++      ++P  V               ERL + ++R 
Sbjct  496  SNLKPENEDEELDAKTIYRTTYM---FSATMPPAV---------------ERLARKYLRN  537

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD----QAIIFCRTKIDCDNL  522
              V           + ++ ++ + + K    +  +++   D     AI+FC TK   D  
Sbjct  538  PVVVTIGT---AGKATDLITQNVIMTKESEKMSRLQKILTDLGDKPAIVFCNTKKSAD--  592

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
                  +    DK G  F    LHG +   +R+ +L+ F+      L+ TDVA RGIDI 
Sbjct  593  -----ARAKDLDKAG--FRVTTLHGGKSQEQRETSLDGFRNRRFTVLVATDVAGRGIDIP  645

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
             V +VIN  +P     Y HRIGR GRA + GLA S +  E   +++ +
Sbjct  646  DVAHVINYEMPSSIDTYTHRIGRTGRAGKKGLATSFLTLENTDIFFDL  693


 Score = 52.4 bits (124),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 28/64 (44%), Positives = 40/64 (63%), Gaps = 0/64 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M  +SE  +  E+ +AVE+  +  P+ IQ  SIPL L   DV+  AETGSGKT AF +P+
Sbjct  314  MRKWSESKLGTELLRAVEKAGYKEPSPIQMASIPLGLQQRDVIGIAETGSGKTAAFVLPM  373

Query  61   IQIV  64
            +  +
Sbjct  374  LSYI  377


>sp|Q6BML1|PRP5_DEBHA Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 
767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 
GN=PRP5 PE=3 SV=2
Length=913

 Score = 119 bits (297),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 100/350 (29%), Positives = 161/350 (46%), Gaps = 65/350 (19%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  LI+ P+RELA Q    +  F K ++   +      GG +   Q++ L+ G  I+V
Sbjct  389  DGPIGLIMTPTRELALQIHKELNHFTKKLN---ISSCCCFGGSSIESQIAELKKGAQIIV  445

Query  345  GTPGRLDDLVS--TGKL-NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL  401
            GTPGR+ DL++  +G++ NL +V +LVLDEAD +   G+           PQVT    R+
Sbjct  446  GTPGRIIDLLAANSGRVTNLQRVTYLVLDEADRMFDMGFE----------PQVTKVFTRV  495

Query  402  ----QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWE  457
                Q ++ SAT     ++ L++KI+  P  + + G   V   +   V     + D+  E
Sbjct  496  RPDRQTVLFSATFPR-KMELLAKKILDNPMEIVVGGISVVASEITQKVELFENEDDKSLE  554

Query  458  RLGKSHIRT--DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRT  515
                S + +  +D   KD                KIL                  IF   
Sbjct  555  EAKFSKLLSTLNDYGDKD-------------AECKIL------------------IFVEK  583

Query  516  KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD--VRFLICTD  573
            +I  D L    + +         ++ C+ +HG +   +RK  +  F   +  V  LI T 
Sbjct  584  QIAADELLVKLLTE---------KYPCLAIHGGKDQIDRKHAIREFSSSNSGVNILIATS  634

Query  574  VAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
            +AARG+D+ G+  VIN       ++YVHR+GR GRA R G AI+ V++++
Sbjct  635  IAARGLDVKGLNLVINYEAASHMEDYVHRVGRTGRAGRKGTAITFVSSKQ  684


 Score = 51.2 bits (121),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 49/75 (65%), Gaps = 5/75 (7%)

Query  4    FSEMGVMPEIAQAVE-EMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +S++G+   I   +E  +++  P+ IQA++IP I+ G D++  A+TGSGKT +F +P+++
Sbjct  318  WSQLGLPSTIMSIIEGRLNYSSPSSIQAQAIPAIMSGRDIIGVAKTGSGKTLSFVLPLLR  377

Query  63   IVYETLKDQQEGKKG  77
                 ++DQ   KKG
Sbjct  378  ----HIQDQPPLKKG  388


>sp|A1DL85|SUB2_NEOFI ATP-dependent RNA helicase sub2 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=sub2 
PE=3 SV=1
Length=441

 Score = 116 bits (290),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 101/356 (28%), Positives = 163/356 (46%), Gaps = 60/356 (17%)

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            Q + +P     L++  +RELA Q  N   +F KY+  P ++  +  GG   +  + VL N
Sbjct  119  QLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYL--PDVKTAVFYGGTPIQKDIEVLSN  176

Query  339  G---VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
                 +IVVGTPGRL+ LV   KL+L  V+  VLDE D +L Q     + R   +I + T
Sbjct  177  KESYPNIVVGTPGRLNALVREKKLSLRNVKAFVLDECDKMLDQID---MRRDVQEIFRAT  233

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL  455
               K  QV++ SATL S +++ + +K M  P  V +  +D    T+H +         + 
Sbjct  234  PADK--QVMMFSATL-SQEIRPICKKFMRNPLEVYV--DDDTKLTLHGL--------QQY  280

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRT  515
            + +L +S                              K       +   + +Q IIF ++
Sbjct  281  YIKLSESE-----------------------------KNRKLNELLDSLEFNQVIIFVKS  311

Query  516  KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA  575
             +  + L++           +   F  + +H      ER +  + FK+ + R  + TDV 
Sbjct  312  TLRANELDKLL---------RECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVF  362

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK-EKVWYHV  630
             RGIDI  +   IN  LP +  +Y+HR+GR GR    GL+IS V++E+ EKV   +
Sbjct  363  GRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSSEEDEKVLKEI  418


>sp|Q879Y6|RHLB_XYLFT ATP-dependent RNA helicase RhlB OS=Xylella 
fastidiosa (strain Temecula1 / ATCC 700964) OX=183190 GN=rhlB 
PE=3 SV=1
Length=543

 Score = 117 bits (293),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 103/336 (31%), Positives = 158/336 (47%), Gaps = 58/336 (17%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P  P+ALI+ P+RELA Q  N+  +F     N  LR  LI GGV    Q  +L  G D+V
Sbjct  82   PEDPRALILAPTRELAIQIYNDAVKFG---GNLGLRFALIYGGVDYDRQREMLRKGADVV  138

Query  344  VGTPGRLDDLVSTGKL-NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            + TPGRL D +   ++ +L      VLDEAD +   G+   I  +  ++P+  S     Q
Sbjct  139  IATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLPERCSR----Q  194

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
             ++ SATL S  V +L+ + M+ P  +  + E                 T R+ +R+   
Sbjct  195  TLLFSATL-SHRVLELAYEYMNEPEKLVAETESVT--------------TTRVRQRI---  236

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
            +   ++                  E I +L G      +  ++  + ++F  TK+  + +
Sbjct  237  YFPAEE------------------EKIPLLLG-----LLSRNEGMRTMVFVNTKVFVEGV  273

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
             +         D+ G++     L GD    +R+  L RF+KG +  L+ TDVAARG+ I 
Sbjct  274  ARAL-------DEAGYRVGV--LSGDVPQRKRETLLNRFQKGQLEILVATDVAARGLHID  324

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            GV YV N  LP + ++YVHRIGR  R    G AIS 
Sbjct  325  GVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISF  360


 Score = 41.6 bits (96),  Expect = 0.027, Method: Compositional matrix adjust.
 Identities = 21/59 (36%), Positives = 33/59 (56%), Gaps = 0/59 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           FS   + P +   +    + L T IQA ++P+ L G D+   A+TG+GKT AF + V+ 
Sbjct  11  FSSFDLHPALLTGLTRAGFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVVN  69


>sp|P0CR00|RRP3_CRYNJ ATP-dependent rRNA helicase RRP3 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=RRP3 PE=3 SV=1
Length=484

 Score = 116 bits (291),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 97/349 (28%), Positives = 146/349 (42%), Gaps = 60/349 (17%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            AL++ P+RELA Q    +      I    +R  +++GG+    Q   L     I+V TPG
Sbjct  109  ALVLAPTRELAYQISQQVTSLGSGIG---VRTAVLVGGMDMMSQSIALSKRPHIIVATPG  165

Query  349  RL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            RL D L +T   +L  +++LV+DEAD LL   +   I+++   IP      K     + S
Sbjct  166  RLMDHLENTKGFSLKSLKYLVMDEADRLLDLDFGPIIDKILKVIP------KERNTYLFS  219

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+ +  V KL    ++ P  V++  + S   T+    + +  K                
Sbjct  220  ATMTT-KVAKLQRASLNKPVRVEVSSKYSTVSTLLQHYLLLPLKN---------------  263

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                                     K  Y +    E      +IF RT  D   L     
Sbjct  264  -------------------------KDAYLLYLANELSSSSMMIFTRTVADSQRLSIILR  298

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
            + G         F  + LHG      R  +L +FK G    L+ TDVA+RG+DI  V  V
Sbjct  299  RLG---------FPAIPLHGQMTQSLRLASLNKFKSGGRSILVATDVASRGLDIPLVDLV  349

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGK  636
            IN  +P   ++YVHR+GR  RA R G +I+LV     ++   + S  GK
Sbjct  350  INYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQYDVEILQRIESHIGK  398


 Score = 70.1 bits (170),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 30/63 (48%), Positives = 47/63 (75%), Gaps = 0/63 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+++G+ PE+ +A   M +  P+DIQAE+IP  L G D++  A+TGSGKT AFS+P++Q 
Sbjct  40   FADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQT  99

Query  64   VYE  66
            ++E
Sbjct  100  LWE  102


>sp|P0CR01|RRP3_CRYNB ATP-dependent rRNA helicase RRP3 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=RRP3 PE=3 SV=1
Length=484

 Score = 116 bits (291),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 97/349 (28%), Positives = 146/349 (42%), Gaps = 60/349 (17%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            AL++ P+RELA Q    +      I    +R  +++GG+    Q   L     I+V TPG
Sbjct  109  ALVLAPTRELAYQISQQVTSLGSGIG---VRTAVLVGGMDMMSQSIALSKRPHIIVATPG  165

Query  349  RL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            RL D L +T   +L  +++LV+DEAD LL   +   I+++   IP      K     + S
Sbjct  166  RLMDHLENTKGFSLKSLKYLVMDEADRLLDLDFGPIIDKILKVIP------KERNTYLFS  219

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+ +  V KL    ++ P  V++  + S   T+    + +  K                
Sbjct  220  ATMTT-KVAKLQRASLNKPVRVEVSSKYSTVSTLLQHYLLLPLKN---------------  263

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                                     K  Y +    E      +IF RT  D   L     
Sbjct  264  -------------------------KDAYLLYLANELSSSSMMIFTRTVADSQRLSIILR  298

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
            + G         F  + LHG      R  +L +FK G    L+ TDVA+RG+DI  V  V
Sbjct  299  RLG---------FPAIPLHGQMTQSLRLASLNKFKSGGRSILVATDVASRGLDIPLVDLV  349

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGK  636
            IN  +P   ++YVHR+GR  RA R G +I+LV     ++   + S  GK
Sbjct  350  INYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQYDVEILQRIESHIGK  398


 Score = 70.1 bits (170),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 30/63 (48%), Positives = 47/63 (75%), Gaps = 0/63 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+++G+ PE+ +A   M +  P+DIQAE+IP  L G D++  A+TGSGKT AFS+P++Q 
Sbjct  40   FADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQT  99

Query  64   VYE  66
            ++E
Sbjct  100  LWE  102


>sp|P29562|IF4A1_RABIT Eukaryotic initiation factor 4A-I (Fragment) 
OS=Oryctolagus cuniculus OX=9986 GN=EIF4A1 PE=1 SV=2
Length=398

 Score = 115 bits (287),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 113/398 (28%), Positives = 180/398 (45%), Gaps = 65/398 (16%)

Query  249  FPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQ  308
             P   G+  +++A  G   K+     + + Q +    A +AL++ P+RELA+Q    +  
Sbjct  56   LPCIKGYDVIAQAQSG-TGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMA  114

Query  309  FKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGTPGRLDDLVSTGKLNLSQVRFL  367
               Y+          IGG   R ++  L+     I+VGTPGR+ D+++   L+   ++  
Sbjct  115  LGDYMGASCHA---CIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMF  171

Query  368  VLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPT  427
            VLDEAD +LS+G+ D I  +  ++   T      QV++ SAT+ S DV ++++K M  P 
Sbjct  172  VLDEADEMLSRGFKDQIYDIFQKLNSNT------QVVLLSATMPS-DVLEVTKKFMRDPI  224

Query  428  WVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSE  487
             + +K E+   + +    + V        ER                        E W  
Sbjct  225  RILVKKEELTLEGIRQFYINV--------ER------------------------EEWK-  251

Query  488  AIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHG  547
             +  L   Y    I      QA+IF  T+   D L +               F+   +HG
Sbjct  252  -LDTLCDLYETLTIT-----QAVIFINTRRKVDWLTEKM---------HARDFTVSAMHG  296

Query  548  DRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVG  607
            D    ER   +  F+ G  R LI TD+ ARGID+  V  VIN  LP  ++NY+HRIGR G
Sbjct  297  DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG  356

Query  608  RAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            R  R G+AI++V  E ++    +     +  YNT ++E
Sbjct  357  RFGRKGVAINMVTEEDKRTLRDI-----ETFYNTSIEE  389


 Score = 38.1 bits (87),  Expect = 0.25, Method: Compositional matrix adjust.
 Identities = 20/70 (29%), Positives = 38/70 (54%), Gaps = 0/70 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +F +M +   + + +    +  P+ IQ  +I   + G DV+  A++G+GKT  F+I ++Q
Sbjct  25  SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ  84

Query  63  IVYETLKDQQ  72
            +   LK  Q
Sbjct  85  QIELDLKATQ  94


>sp|Q5R5F5|IF4A1_PONAB Eukaryotic initiation factor 4A-I OS=Pongo 
abelii OX=9601 GN=EIF4A1 PE=2 SV=1
Length=406

 Score = 115 bits (288),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 107/361 (30%), Positives = 166/361 (46%), Gaps = 64/361 (18%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVV  344
            A +AL++ P+RELA+Q    +     Y+          IGG   R ++  L+     I+V
Sbjct  100  ATQALVLAPTRELAQQIQKVVMALGDYMGASCHA---CIGGTNVRAEVQKLQMEAPHIIV  156

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GTPGR+ D+++   L+   ++  VLDEAD +LS+G+ D I  +  ++   T      QV+
Sbjct  157  GTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT------QVV  210

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT+ S DV ++++K M  P  + +K E+   + +    + V        ER      
Sbjct  211  LLSATMPS-DVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINV--------ER------  255

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                              E W   +  L   Y    I      QA+IF  T+   D L +
Sbjct  256  ------------------EEWK--LDTLCDLYETLTIT-----QAVIFINTRRKVDWLTE  290

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
                           F+   +HGD    ER   +  F+ G  R LI TD+ ARGID+  V
Sbjct  291  KM---------HARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQV  341

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLK  644
              VIN  LP  ++NY+HRIGR GR  R G+AI++V  E ++    +     +  YNT ++
Sbjct  342  SLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI-----ETFYNTSIE  396

Query  645  E  645
            E
Sbjct  397  E  397


 Score = 37.0 bits (84),  Expect = 0.58, Method: Compositional matrix adjust.
 Identities = 18/48 (38%), Positives = 29/48 (60%), Gaps = 0/48 (0%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQ  72
            P+ IQ  +I   + G DV+  A++G+GKT  F+I ++Q +   LK  Q
Sbjct  55   PSAIQQRAILSCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQ  102


>sp|Q6CJU1|DBP5_KLULA ATP-dependent RNA helicase DBP5 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP5 PE=3 SV=1
Length=469

 Score = 116 bits (290),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 109/348 (31%), Positives = 162/348 (47%), Gaps = 73/348 (21%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N+ +A+ + P+RELA QTL  I++  K+    K    L++     R++        +IVV
Sbjct  148  NSTQAICLSPARELARQTLEVIQEMGKFT---KTSSQLVVPDSFERNK----PITANIVV  200

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQV  403
            GTPG + DL+    LNL  ++  VLDEAD +L  QG  D   R+   +P      K  Q+
Sbjct  201  GTPGTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLP------KTCQL  254

Query  404  IVCSATLHSFD--VKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK  461
            ++ SAT   FD  V++ ++KI+  PT V L+                          L K
Sbjct  255  VLFSAT---FDDGVRQYAKKII--PTAVSLE--------------------------LQK  283

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
            + +    +  K       N    ++    IL   Y +  I       +IIF +TK   + 
Sbjct  284  NEVNVSAI--KQLFMDCDNEEHKYT----ILSELYGLLTI-----GSSIIFVKTKQTANL  332

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            L            K+GHQ S   LHGD +  +R + ++ F++G  + LI T+V ARGIDI
Sbjct  333  LYAKL-------KKEGHQVSI--LHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDI  383

Query  582  HGVPYVINVTLPD------EKQNYVHRIGRVGRAERMGLAISLVATEK  623
              V  V+N  LP       +   YVHRIGR GR  R G+AIS +  +K
Sbjct  384  PSVSMVVNYDLPTLPNGQADPSTYVHRIGRTGRFGRTGVAISFIHDKK  431


>sp|Q9DBN9|DDX59_MOUSE Probable ATP-dependent RNA helicase DDX59 
OS=Mus musculus OX=10090 GN=Ddx59 PE=1 SV=1
Length=619

 Score = 117 bits (294),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 163/349 (47%), Gaps = 61/349 (17%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
             P ALI+ P+RELA Q     K+    +  P+++ +L++GG+    QL  L   V +++ 
Sbjct  271  TPSALILTPTRELAIQIERQAKELMSGL--PRMKTVLLVGGLPLPPQLYRLRQHVKVIIA  328

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGRL D++    ++LS ++ +V+DEAD +L  G+   +  +    P         Q I+
Sbjct  329  TPGRLLDIIKQSSVSLSGIKIVVVDEADTMLKMGFQQQVLDVLEHTP------GDCQTIL  382

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVP-DTVHHVVVPVN--PKTDRLWERLGKS  462
             SAT+    +++L+++++H P  + + G+ ++P  +V  +++ V    K  +L+E L   
Sbjct  383  VSATIPD-SIEQLTDQLLHNPVRI-ITGDKNLPCASVRQIILWVEDPAKKKKLFEILNDQ  440

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
             +    V    + + GA+   + SEA++ + G                            
Sbjct  441  KLFKPPVLVFVDCKLGAD---LLSEAVQKITG----------------------------  469

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
                              +   +H ++   ER+  L+   +GD   ++ T V  RG+D+ 
Sbjct  470  -----------------LNSTSIHSEKSQVERRDILKGLLEGDYEVVVSTGVLGRGLDLV  512

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVC  631
             V  V+N  +P     YVH++GRVGR  + G AI+ +    +++++ V 
Sbjct  513  NVKLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDVA  561


 Score = 49.3 bits (116),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 37/58 (64%), Gaps = 0/58 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            F   G    + Q +++  + +PT IQ + IP+ L G D+L +A+TGSGKT AF +PVI
Sbjct  205  FEHCGFPETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVI  262


>sp|Q4IFI0|RRP3_GIBZE ATP-dependent rRNA helicase RRP3 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=RRP3 PE=3 SV=1
Length=486

 Score = 116 bits (290),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 101/379 (27%), Positives = 158/379 (42%), Gaps = 65/379 (17%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR  349
            L++ P+RELA Q     +     I    LR  +I+GG+    Q   L     IVV TPGR
Sbjct  132  LVLAPTRELATQIGQAFEALGSLIS---LRCAVIVGGLDMVPQAIALGKKPHIVVATPGR  188

Query  350  L-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSA  408
            L D L  T   +L  +++L++DEAD LL   +   I+++   +P      +  +  + SA
Sbjct  189  LVDHLEKTKGFSLRTLKYLIMDEADRLLDMDFGPSIDKILKFVP------RERRTYLFSA  242

Query  409  TLHSFDVKKLSEKIMHFPTWVDLKGE--DSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            T+ S  ++ L    +  P  V +      +V   + + +   +P+               
Sbjct  243  TISS-KIESLQRASLRDPVKVSISSNKYQTVSTLLQNYLFIPHPQ---------------  286

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
             DVH                           +  I EH     I+F RT  +   +    
Sbjct  287  KDVHL--------------------------IYLINEHAGQSTIVFTRTVWETQRVSILL  320

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
               G         F  + LHG      R   L +F+ G    L+ TDVAARG+DI  V  
Sbjct  321  RTLG---------FGAIPLHGQLSQSSRLGALNKFRSGTRDILVATDVAARGLDIPSVDV  371

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGC--YNTRLK  644
            V+N  LP + + Y+HR+GR  RA + G+AISLV     +++  + ++ GK    Y T  +
Sbjct  372  VLNYDLPQDSKTYIHRVGRTARAGKSGVAISLVTQYDLEIYLRIEAALGKKLAEYPTEKE  431

Query  645  EDGGCTIWYNEMQLLSEIE  663
            E         E Q ++ IE
Sbjct  432  EVMAFQSRVEEAQRIARIE  450


 Score = 62.4 bits (150),  Expect = 9e-09, Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 45/63 (71%), Gaps = 0/63 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F ++GV   + +A E++++  PT IQ +SIP+ L G D++  AETGSGKT AF++PV+Q 
Sbjct  62   FKDLGVNDALCEACEKLNYKYPTPIQEKSIPVALQGRDIIGLAETGSGKTAAFALPVLQA  121

Query  64   VYE  66
            + +
Sbjct  122  LLD  124


>sp|Q9Y6V7|DDX49_HUMAN Probable ATP-dependent RNA helicase DDX49 
OS=Homo sapiens OX=9606 GN=DDX49 PE=1 SV=1
Length=483

 Score = 116 bits (290),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 147/335 (44%), Gaps = 61/335 (18%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR  349
            L++ P+RELA Q     +   K +    L++ +I+GG+    Q   L     +V+ TPGR
Sbjct  74   LVLTPTRELAYQIAEQFRVLGKPLG---LKDCIIVGGMDMVAQALELSRKPHVVIATPGR  130

Query  350  L-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSA  408
            L D L S+   ++ ++RFLV+DEAD LL QG +DF   +   +  V +   R Q ++ SA
Sbjct  131  LADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPA---RRQTLLFSA  187

Query  409  TLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDD  468
            TL                T  +L+G  +          PV+       E+L + ++    
Sbjct  188  TLTD--------------TLRELQGLATNQPFFWEAQAPVST-----VEQLDQRYLLV--  226

Query  469  VHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK----EHKMDQAIIFCRTKIDCDNLEQ  524
                         PE   +A       Y V  I+    EH+    IIF  T   C  L  
Sbjct  227  -------------PEKVKDA-------YLVHLIQRFQDEHEDWSIIIFTNTCKTCQILCM  266

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
                       +   F  V LH   K  ER   L +FK    R LI TDVA+RG+DI  V
Sbjct  267  ML---------RKFSFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTV  317

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
              VIN   P   + Y+HR+GR  RA R G AI+LV
Sbjct  318  QVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLV  352


 Score = 54.7 bits (130),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 27/66 (41%), Positives = 40/66 (61%), Gaps = 0/66 (0%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           MA F+E+G+   + +   ++    PT +Q   IP IL G D L  A+TGSGKT AF +P+
Sbjct  1   MAGFAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPI  60

Query  61  IQIVYE  66
           +Q + E
Sbjct  61  LQKLSE  66


>sp|Q757U8|DBP10_EREGS ATP-dependent RNA helicase DBP10 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DBP10 PE=3 SV=1
Length=960

 Score = 118 bits (296),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 96/345 (28%), Positives = 160/345 (46%), Gaps = 33/345 (10%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +A+I+ PSRELA QT    K FK++     LR +L+ GG    DQ S++ +  D+++ TP
Sbjct  192  RAMILSPSRELAMQTH---KVFKEFAKGSNLRSVLLTGGDGLEDQFSMMMSNPDVIIATP  248

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR   L     L+L  + ++V DEAD L   G+ + +N +   +P         Q ++ S
Sbjct  249  GRFLHLKVEMNLDLHSIEYVVFDEADRLFEMGFQEQLNELLGSLPTAR------QTLLFS  302

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDR-------LWERLG  460
            ATL S  V   ++  +  P  V L  E  V + +  + + V  K D        L + + 
Sbjct  303  ATLPSSLV-DFAKAGLTNPVLVRLDTETKVSENLEMLFLSV--KNDEREANLLYLLQEVI  359

Query  461  KSHIRTDD----VHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM-DQAIIFCRT  515
            K  + T++       + N     +  E   +     K +  + + K+    +  IIF  T
Sbjct  360  KIPVATEEQLQRFRKQSNDDADDSDDETDKKKKHSKKSKQPLPSAKDMPSPNSTIIFVST  419

Query  516  KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA  575
            +   + +       G         +    L+G    H R+Q L  F+ G    L+ TDVA
Sbjct  420  RHHVEYVSNLLKDCG---------YLVSYLYGTLDQHARRQQLHNFRCGLTNILVVTDVA  470

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            ARG+DI  +  V+N++LP   + +VHR+GR  RA   G A ++++
Sbjct  471  ARGVDIPLLANVVNMSLPASSKIFVHRVGRTARAGNKGWAYTILS  515


 Score = 48.9 bits (115),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 0/60 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F+  G+   I   +    +  PT IQ ++IPLIL   D++  A TGSGKT AF +P+I+
Sbjct  121  SFASFGLSKFILGNISRKGFRQPTPIQRKTIPLILQQRDIVGMARTGSGKTAAFVLPLIE  180


>sp|A6R9U4|MAK5_AJECN ATP-dependent RNA helicase MAK5 OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=MAK5 PE=3 
SV=1
Length=772

 Score = 118 bits (295),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 110/380 (29%), Positives = 168/380 (44%), Gaps = 47/380 (12%)

Query  265  YIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
            Y +K++     Q    +     P ALI+ P+RELA Q   +I        N   R  L+ 
Sbjct  248  YYLKNRREEPVQHNDAELSSKYPIALILSPTRELAHQLSKHITALCTNAPNINARIALLT  307

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYS  381
            GG++ + Q  VL N  DIV+GTPGRL D++STG         ++FLV+DEAD LLS+G+ 
Sbjct  308  GGLSVQKQQRVLANA-DIVIGTPGRLWDVISTGHGLLRKFQNIKFLVIDEADRLLSEGHF  366

Query  382  DFINRMHNQIPQ------VTSDGKR---------LQVIVCSATLHSFDVKKLSEKIMHFP  426
              +  +   + +      VT+D +           Q +V SAT H    +KL+ K  +F 
Sbjct  367  KEVEEILTALDRKEIHHKVTADSESEDDASRESPRQTLVFSATFHKGLQQKLAGKGRYFD  426

Query  427  TWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWS  486
               DL  +     ++ +++  +N + DR         I  + V      +   N  E   
Sbjct  427  G--DLLDDKQ---SMEYLLKKLNFREDR------PKFIDVNPV-----AQMAENLKEGLV  470

Query  487  EAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLH  546
            E   + K  Y    +  H   + ++F  + I        F+Q    P         + LH
Sbjct  471  ECPAMEKDLYLYTLMLYHPQHRTLVFTNS-ISAVRRLTAFLQNLNLP--------ALALH  521

Query  547  GDRKPHERKQNLERFKKGDV---RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI  603
                   R +++ERF          L+ TDVAARG+DI G+  +I+  +P     YVHR 
Sbjct  522  SSMAQKARLRSVERFSSPTADPSSILVATDVAARGLDIKGIDLIIHYHVPRTADTYVHRS  581

Query  604  GRVGRAERMGLAISLVATEK  623
            GR  RA   G +I L A E+
Sbjct  582  GRTARASASGKSILLCAPEE  601


 Score = 53.1 bits (126),  Expect = 9e-06, Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 43/71 (61%), Gaps = 0/71 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++ +  +G+  EI  ++ ++ +  PT IQ   IPLI  G DV+  A TGSGKT AF IP+
Sbjct  186  VSGWDPLGISAEIQTSLSKLRFAKPTPIQTACIPLIASGHDVVGKASTGSGKTLAFGIPI  245

Query  61   IQIVYETLKDQ  71
            ++   +  +++
Sbjct  246  LEYYLKNRREE  256


>sp|Q4WIN6|DBP5_ASPFU ATP-dependent RNA helicase dbp5 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=dbp5 PE=3 SV=2
Length=489

 Score = 116 bits (290),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 107/417 (26%), Positives = 174/417 (42%), Gaps = 123/417 (29%)

Query  280  TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN-  338
            T+ +   P+ALI+ P+RELA Q L  ++   +++D       LIIG     D+ S  +  
Sbjct  145  TEQMQKTPQALILAPTRELARQILGVVQVMGQFVDG------LIIGAAVPTDRDSRPKRL  198

Query  339  GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVTSD  397
               IVVGTPG + D++       ++++ LVLDEAD +L  QG  D   R+   +P     
Sbjct  199  ECSIVVGTPGTVGDMIKRRTFIPNKLKVLVLDEADNMLDQQGLGDQCIRVKALLP-----  253

Query  398  GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWE  457
             + +QV++ SAT                            P+ VH       P  + +  
Sbjct  254  -RDIQVVLFSATF---------------------------PEHVHQYASKFAPNANEIT-  284

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKIL-----KGEYAVRAIKEH----KMDQ  508
                                     E+  E IK L      GE   R + +      +  
Sbjct  285  ---------------------LQHEELTVEGIKQLYLDCADGEDKYRTLVQLYGLLTVGS  323

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
            +IIF +T+     +E+    +G          + V L G+R P  R   +++F++G+ + 
Sbjct  324  SIIFVQTRAAAQEIERRMTAEG---------HTVVSLTGERDPSVRDAIIDQFRRGEAKV  374

Query  569  LICTDVAARGIDIHGVPYVINVTLPD-----------EKQNYVHRIGRVGRAERMGLAIS  617
            LI T+V ARGID+  V  VIN  +P+           + Q Y+HRIGR GR  R+G++IS
Sbjct  375  LIATNVLARGIDVSTVSMVINYDIPELHQPNVPGRQADFQTYLHRIGRTGRFGRVGVSIS  434

Query  618  LVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVE  674
             V+  +E  W                             ++L++I+ + NC I +V+
Sbjct  435  FVSNREE--W-----------------------------EMLNQIQTYFNCEIQRVD  460


 Score = 38.9 bits (89),  Expect = 0.16, Method: Compositional matrix adjust.
 Identities = 17/57 (30%), Positives = 36/57 (63%), Gaps = 2/57 (4%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            F ++G+ P I + +  M++  P+ IQ  ++PL+L     +++  +++G+GKT AF +
Sbjct  79   FEDLGLDPRILKGLSSMNFRKPSKIQERALPLLLNNPPKNLVGQSQSGTGKTAAFVL  135


>sp|Q4WXW1|DBP8_ASPFU ATP-dependent RNA helicase dbp8 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=dbp8 PE=3 SV=1
Length=526

 Score = 116 bits (291),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 101/341 (30%), Positives = 154/341 (45%), Gaps = 64/341 (19%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPK-LRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            +++ P+RELA Q    IK     I  P+ ++ +LI GG   R Q   L     +V+ TPG
Sbjct  168  VVLTPTRELALQIFEQIK----AISAPQSMKPVLITGGTDMRPQAIALAGRPHVVIATPG  223

Query  349  RLDDLV-STGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            RL D + S+G+     L +VR +VLDEAD LL+ G    +  +   +  +    +R Q +
Sbjct  224  RLADHIKSSGEDTVCGLKRVRMVVLDEADRLLASGPGSMLPDVETCLSALPPSSER-QTL  282

Query  405  VCSATLHSFDVKKL------SEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER  458
            + +AT+ + +V+ L      + K   F T +  + + ++P T+    + V P T R    
Sbjct  283  LFTATV-TPEVRALKNMPRSANKPPVFVTEISTENQGTIPPTLKQTYLKV-PLTHR----  336

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
                      +H   +T   A+ P                          AI+FC     
Sbjct  337  -------EAFLHVLLSTEGNASKP--------------------------AIVFCNHTKT  363

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
             D LE+          +  H+ +   LH      ER  NL RF+    R L+ TDVA+RG
Sbjct  364  ADLLERML-------RRLSHRVTS--LHSLLPQSERNANLARFRASAARILVATDVASRG  414

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +DI  V  VIN  +P    +YVHR+GR  RA R G A++LV
Sbjct  415  LDIPTVSLVINYDVPRNPDDYVHRVGRTARAGRRGEAVTLV  455


 Score = 48.9 bits (115),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 25/61 (41%), Positives = 37/61 (61%), Gaps = 0/61 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            ++F+ + V P +  ++  M    PT IQ   IP IL G D +  + TGSGKT AFS+P++
Sbjct  96   SSFAALNVAPWLVGSLTTMAVRKPTAIQKACIPEILKGRDCIGGSRTGSGKTIAFSVPML  155

Query  62   Q  62
            Q
Sbjct  156  Q  156


>sp|Q59PR3|DBP8_CANAL ATP-dependent RNA helicase DBP8 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP8 
PE=3 SV=1
Length=440

 Score = 115 bits (288),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 159/345 (46%), Gaps = 75/345 (22%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR  349
            LI+ P+RELA Q     +QF     N  ++  +++GG     Q   L+     V+ TPGR
Sbjct  73   LILTPTRELALQI---AEQFAALGANMNIKVAVVVGGEDFVQQTLALQRKPHFVIATPGR  129

Query  350  L-DDLVSTGKLNLS---QVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            L D ++++G+  +S   +V++LVLDEAD LLS  +   + R  + +P  TSD +  Q ++
Sbjct  130  LADHILNSGEETISGLRRVKYLVLDEADRLLSNSFGSDLQRCFDVLP--TSDKR--QTLL  185

Query  406  CSATLHSFDVKKLSEK---------IMHFPTWVDLKGEDSVPDT--VHHVVVPVNPKTDR  454
             +AT+    V+ L EK          MH    VD   + ++P T  + +V VP       
Sbjct  186  FTATITD-AVRALKEKPPTPGKPPVFMHEVETVD---KVAIPSTLQISYVFVP-------  234

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
                   S+++                 E +  +I  L+         + K   A+IF  
Sbjct  235  -------SYVK-----------------EAYLNSILHLE---------QFKDSTAVIFVN  261

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
                 + L +           +   F    LH +    ER  +L RFK G  R LI TDV
Sbjct  262  RTTTAEVLRRML---------RKLDFRVASLHSEMPQSERTNSLHRFKAGAARILIATDV  312

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            A+RG+DI  V  VIN  +P +  +++HR+GR  RA R G A+S++
Sbjct  313  ASRGLDIPTVELVINFDIPADPDDFIHRVGRTARAGRKGDAVSII  357


 Score = 50.8 bits (120),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 24/59 (41%), Positives = 40/59 (68%), Gaps = 0/59 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
           +F+++GV   ++++++ M    PT IQ+  IP IL G D +  A+TGSGKT AF+ P++
Sbjct  2   SFNDLGVAKWLSESLDAMKIYTPTAIQSACIPAILKGHDCIGGAKTGSGKTIAFAAPML  60


>sp|Q6FQQ6|IF4A_CANGA ATP-dependent RNA helicase eIF4A OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=TIF1 PE=3 SV=1
Length=396

 Score = 114 bits (285),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 164/360 (46%), Gaps = 64/360 (18%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            AP+AL++ P+RELA Q    +     ++D   ++    IGG +  +    L +   IVVG
Sbjct  91   APQALMLAPTRELALQIQKVVMALGFHMD---IKVHACIGGTSFVEDAEGLRDA-QIVVG  146

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGR+ D +   K  +  ++  +LDEAD +LS G+ + I ++   +P  T      QV++
Sbjct  147  TPGRVFDNIQRRKFKVDNIKMFILDEADEMLSTGFKEQIYQIFTMLPPTT------QVVL  200

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT+   DV +++ K M  P  + +K ++   + +    V V        E   K    
Sbjct  201  LSATMPR-DVLEVTAKFMQNPVRILVKKDELTLEGIKQFYVNVE-------EEQFKYDCL  252

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
            TD                   ++I +                QA+IFC T+   + L Q 
Sbjct  253  TD-----------------LYDSISV---------------TQAVIFCNTRRKVEELTQR  280

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
                          F+   ++ D    ER   ++ F+ G  R LI TD+ ARGID+  V 
Sbjct  281  L---------TADNFTVSSIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVS  331

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
             VIN  LP  K+NY+HRIGR GR  R G+AI+ +  E  +    +     +  Y+T+++E
Sbjct  332  LVINYDLPTNKENYIHRIGRGGRFGRKGVAINFIVNEDVQALREL-----EQFYSTQIEE  386


 Score = 41.6 bits (96),  Expect = 0.022, Method: Compositional matrix adjust.
 Identities = 24/69 (35%), Positives = 39/69 (57%), Gaps = 0/69 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F +M +  ++ + V    +  P+ IQ  +I  I+ G DVL  A++G+GKTG FSI  +Q 
Sbjct  25  FDDMNLNEKLLRGVFGYGFNKPSAIQQRAIMPIIEGNDVLAQAQSGTGKTGTFSIAALQR  84

Query  64  VYETLKDQQ  72
           +   +K  Q
Sbjct  85  IDPAIKAPQ  93


>sp|Q61655|DD19A_MOUSE ATP-dependent RNA helicase DDX19A OS=Mus 
musculus OX=10090 GN=Ddx19a PE=1 SV=2
Length=478

 Score = 115 bits (289),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 115/437 (26%), Positives = 191/437 (44%), Gaps = 108/437 (25%)

Query  256  VALSKAPDGYIVKSQHSGN--------AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIK  307
            + L++ P   I +SQ SG         A +++ +     P+ L + P+ ELA QT   I+
Sbjct  124  MMLAEPPQNLIAQSQ-SGTGKTAAFVLAMLSRVEPADRYPQCLCLSPTYELALQTGKVIE  182

Query  308  QFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGK-LNLSQVRF  366
            Q  K+  +P+L+    + G        V E    IV+GTPG + D  S  K ++  +++ 
Sbjct  183  QMGKF--HPELKLAYAVRGNKLERGQKVSEQ---IVIGTPGTVLDWCSKLKFIDPKKIKV  237

Query  367  LVLDEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF  425
             VLDEAD ++ +QG+ D   R+   +P      +  Q+++ SAT     V K ++K++  
Sbjct  238  FVLDEADVMIATQGHQDQSIRIQRMLP------RNCQMLLFSATFED-SVWKFAQKVVPD  290

Query  426  PTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW  485
            P  + LK E+   DT+    V  N + ++                               
Sbjct  291  PNIIKLKREEETLDTIKQYYVLCNNREEKF------------------------------  320

Query  486  SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL  545
             +A+  L G   +         QA+IFC T+     L            K+GHQ +   L
Sbjct  321  -QALCNLYGAITIA--------QAMIFCHTRKTASWL-------AAELSKEGHQVAL--L  362

Query  546  HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEK------QNY  599
             G+    +R   +ERF++G  + L+ T+V ARGID+  V  VIN  LP +K      + Y
Sbjct  363  SGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETY  422

Query  600  VHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLL  659
            +HRIGR GR  + GLA+++V ++                               + M +L
Sbjct  423  LHRIGRTGRFGKRGLAVNMVDSK-------------------------------HSMNIL  451

Query  660  SEIEEHLNCTISQVEPD  676
            + I+EH N  I +++ D
Sbjct  452  NRIQEHFNKKIERLDTD  468


 Score = 39.7 bits (91),  Expect = 0.089, Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 39/64 (61%), Gaps = 2/64 (3%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSIPV  60
            +F E+ + P++ Q V  M +  P+ IQ  ++P++L     +++  +++G+GKT AF + +
Sbjct  92   SFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM  151

Query  61   IQIV  64
            +  V
Sbjct  152  LSRV  155


>sp|Q2U6P7|SUB2_ASPOR ATP-dependent RNA helicase sub2 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=sub2 
PE=3 SV=1
Length=441

 Score = 115 bits (287),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 105/353 (30%), Positives = 165/353 (47%), Gaps = 60/353 (17%)

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            Q + +P     L++  +RELA Q  N   +F KY+  P ++  +  GG   +  + VL N
Sbjct  119  QLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYL--PDVKTAVFYGGTPIQKDVEVLSN  176

Query  339  G---VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
                 +IVVGTPGRL+ LV   KL+L  V+  VLDE D +L Q     + R   +I + T
Sbjct  177  KESYPNIVVGTPGRLNALVRDKKLSLRNVKAFVLDECDKMLDQID---MRRDVQEIFRAT  233

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL  455
               K  QV++ SATL S +++ + +K M  P  V +  +D    T+H             
Sbjct  234  PADK--QVMMFSATL-SQEIRPVCKKFMRNPLEVYV--DDDTKLTLHG------------  276

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRT  515
               L + +I+                    SEA K  K    + +++    +Q IIF ++
Sbjct  277  ---LQQYYIK-------------------LSEAEKNRKLNELLDSLE---FNQVIIFVKS  311

Query  516  KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA  575
             +  + L++           +   F  + +H      ER +  + FK+ + R  + TDV 
Sbjct  312  TLRANELDKLL---------RECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVF  362

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK-EKVW  627
             RGIDI  +   IN  LP +  +Y+HR+GR GR    GL+IS V+ E+ EKV 
Sbjct  363  GRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSNEEDEKVL  415


 Score = 33.1 bits (74),  Expect = 9.9, Method: Compositional matrix adjust.
 Identities = 16/58 (28%), Positives = 31/58 (53%), Gaps = 0/58 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            F +  +  E+ +A+ +  +  P+++Q   IP  +   DVL  A++G GKT  F +  +
Sbjct  60   FRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTL  117


>sp|Q1E0Z3|DBP8_COCIM ATP-dependent RNA helicase DBP8 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DBP8 PE=3 SV=1
Length=536

 Score = 116 bits (290),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 104/342 (30%), Positives = 153/342 (45%), Gaps = 64/342 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            A+++ P+RELA Q     +QFK       L+ +LI GG   R Q   L     +V+ TPG
Sbjct  177  AVVLTPTRELALQIF---EQFKAISAPQSLKPVLITGGSEMRPQAIALSTRPHVVIATPG  233

Query  349  RLDDLVSTGKLN----LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            RL D + T   +    L++VR +VLDEAD LL+ G    +  +   +  +     R Q +
Sbjct  234  RLADHIKTSGQDTIYGLNRVRMVVLDEADRLLASGPGSMLPDVETCLSALPPSTSR-QTL  292

Query  405  VCSATLHSFDVKKLS------EKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER  458
            + +AT+ + +V+ L       +++  F T +  +   ++P T+    + V P T R  E 
Sbjct  293  LFTATV-TQEVRALKSMPRPKDRLPIFVTEISTENNTTIPPTLKQCYLQV-PMTHR--EA  348

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFC-RTKI  517
                 + TD           ANS +                         AIIFC RTK 
Sbjct  349  FLHVLLSTD-----------ANSSK------------------------PAIIFCNRTKT  373

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
                             + GH+ +   LH      ER  NL RF+    R L+ TDVAAR
Sbjct  374  ADLLDRLLR--------RLGHRVTS--LHSLLPQSERTSNLARFRASAARLLVATDVAAR  423

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            G+DI  V  V+N  +P    +Y+HR+GR  RA R G AI+LV
Sbjct  424  GLDIPSVGLVVNFDVPRNPDDYIHRVGRTARAGREGEAITLV  465


 Score = 48.1 bits (113),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 0/60 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            ++FS +G+ P +  ++  M    PT IQ   IP IL G D +  + TGSGKT AF+ P++
Sbjct  106  SSFSSLGLAPWLVGSLSAMAIRRPTAIQRACIPEILKGRDCIGGSRTGSGKTVAFAAPIL  165


>sp|A2R0B5|SUB2_ASPNC ATP-dependent RNA helicase sub2 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=sub2 PE=3 SV=1
Length=440

 Score = 115 bits (287),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 105/353 (30%), Positives = 165/353 (47%), Gaps = 60/353 (17%)

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            Q + +P     L++  +RELA Q  N   +F KY+  P ++  +  GG   +  + +L N
Sbjct  118  QLEPVPGECSILVMCHTRELAYQIKNEYARFSKYL--PDVKTAVFYGGTPIQKDVELLSN  175

Query  339  G---VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
                 +IVVGTPGRL+ LV   KL+L  V+  VLDE D +L Q     + R   +I + T
Sbjct  176  KESYPNIVVGTPGRLNALVRDKKLSLRNVKAFVLDECDKMLDQID---MRRDVQEIFRAT  232

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL  455
               K  QV++ SATL S +++ + +K M  P  V +  +D    T+H             
Sbjct  233  PADK--QVMMFSATL-SQEIRPVCKKFMRNPLEVYV--DDDTKLTLHG------------  275

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRT  515
               L + +I+                    SEA K  K    + +++    +Q IIF ++
Sbjct  276  ---LQQYYIK-------------------LSEAEKNRKLNELLDSLE---FNQVIIFVKS  310

Query  516  KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA  575
             +  + L++           +   F  + +H      ER +  + FK+ + R  + TDV 
Sbjct  311  TLRANELDKLL---------RECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVF  361

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE-KEKVW  627
             RGIDI  +   IN  LP +  +Y+HR+GR GR    GL+IS V+TE  EKV 
Sbjct  362  GRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSTEDDEKVL  414


 Score = 33.9 bits (76),  Expect = 6.7, Method: Compositional matrix adjust.
 Identities = 16/58 (28%), Positives = 31/58 (53%), Gaps = 0/58 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            F +  +  E+ +A+ +  +  P+++Q   IP  +   DVL  A++G GKT  F +  +
Sbjct  59   FRDFLLKEELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTL  116


>sp|Q8GUG7|RH50_ARATH DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis 
thaliana OX=3702 GN=RH50 PE=2 SV=2
Length=781

 Score = 117 bits (293),  Expect = 7e-26, Method: Compositional matrix adjust.
 Identities = 96/336 (29%), Positives = 146/336 (43%), Gaps = 44/336 (13%)

Query  280  TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
            +K  P  P+ +++ P+ ELA Q L N +   K       R +++ GG   R QL  LE G
Sbjct  445  SKSSPGCPRVIVLVPTAELASQVLANCRSISK--SGVPFRSMVVTGGFRQRTQLENLEQG  502

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
            VD+++ TPGR   L++ G L LS +R  +LDE D L   G  +F   + N I    S   
Sbjct  503  VDVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILF--GDDEFEAALQNLI---NSSPV  557

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              Q +  +ATL               P  +  K  +  PD      V + P+  R+   L
Sbjct  558  TAQYLFVTATL---------------PLEIYNKLVEVFPD----CEVVMGPRVHRVSNAL  598

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
             +  +   D    DN      +PE   +  K       ++ ++E+ + + IIFC     C
Sbjct  599  EEFLV---DCSGDDN---AEKTPETAFQNKKTA----LLQIMEENPVSKTIIFCNKIETC  648

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG----DVRFLICTDVA  575
              +E  F +     D+K  Q   +  H       R  N++ F       +  FL+CTD A
Sbjct  649  RKVENIFKRV----DRKERQLHVLPFHAALSQESRLTNMQEFTSSQPEENSLFLVCTDRA  704

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
            +RGID  GV +V+    P +   YV R+GR  R  R
Sbjct  705  SRGIDFSGVDHVVLFDFPRDPSEYVRRVGRTARGAR  740


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 22/63 (35%), Positives = 41/63 (65%), Gaps = 0/63 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+E+G   ++ +A++E ++  P  IQA +   ++ G   ++A ++GSGKT A+ +PVIQ 
Sbjct  376  FAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQR  435

Query  64   VYE  66
            + E
Sbjct  436  LRE  438


>sp|A1D1R8|DRS1_NEOFI ATP-dependent RNA helicase drs1 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=drs1 
PE=3 SV=1
Length=819

 Score = 117 bits (293),  Expect = 7e-26, Method: Compositional matrix adjust.
 Identities = 107/385 (28%), Positives = 169/385 (44%), Gaps = 64/385 (17%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +  I+ P+RELA Q  N   +   + D   +    ++GG + R+Q ++L+   D+++ TP
Sbjct  372  RVAILMPTRELAVQCYNVATKLATHTD---ITFCQLVGGFSLREQENILKKRPDVIIATP  428

Query  348  GR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            GR +D + ++    +  +  LVLDEAD +L  G++D +N +   IPQ        Q ++ 
Sbjct  429  GRFIDHMRNSPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPQSR------QTMLF  482

Query  407  SATLHSFDVKKLSEKIMHFPT--WVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            SAT+    V KL    ++ P    VD K   S+  T   V             RL     
Sbjct  483  SATMTD-SVDKLIRVGLNRPVRLMVDSKKNTSMNLTQEFV-------------RL-----  523

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                       RPG     +           Y +    E    + I+F R K +   +  
Sbjct  524  -----------RPGREDKRLG----------YLLYLCNEIYTGRVIVFFRQKREAHRVRI  562

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
             F   G              LHG     +R +++E F++G V FL+ TD+A+RG+DI GV
Sbjct  563  VFGLLG---------LKAAELHGSMSQEQRIKSVENFREGKVAFLLATDLASRGLDIKGV  613

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK-VWYHVCSSRGKGC-YNTR  642
              VIN   P   + Y+HR+GR  RA R G A ++ A    K V   V + + +G    +R
Sbjct  614  ETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKIVKSAVKAGKAQGAKIVSR  673

Query  643  LKEDGGCTIWYNEMQ-LLSEIEEHL  666
            + +      W  + + L  EIEE L
Sbjct  674  VVDPAVADEWAAKAKGLEDEIEEVL  698


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 39/60 (65%), Gaps = 0/60 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F +  +   I + +  +++  PT IQ ++IP+ L G D++ +A TGSGKT AF +P+++
Sbjct  300  SFQDFNLSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILE  359


>sp|Q6CIR0|DBP10_KLULA ATP-dependent RNA helicase DBP10 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / 
NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP10 PE=3 SV=1
Length=973

 Score = 117 bits (294),  Expect = 8e-26, Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 158/346 (46%), Gaps = 33/346 (10%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +A+I+ PSRELA QT    K+F K  D   LR +L+ GG +  DQ  ++    D+V+ TP
Sbjct  198  RAVILSPSRELAIQTHRVFKEFSKGSD---LRSILLTGGDSLEDQFGMMMGNPDVVIATP  254

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR   L     L+L  V ++V DEAD L   G+ + +N +    P         Q ++ S
Sbjct  255  GRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPT------NRQTLLFS  308

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDR------LWERLGK  461
            ATL S  V   ++  +  P  V L  E  + + +  + + +  K +R      L +   K
Sbjct  309  ATLPSSLVD-FAKAGLSNPVLVRLDAETKISENLEMLFISIK-KDEREANLLYLLQEAIK  366

Query  462  SHIRTDD----VHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM---DQAIIFCR  514
              + T+     +  +++    ++  E   +       +   R    ++M      I+F  
Sbjct  367  MPVATESQIKKLKQQNDADSDSDDSEDEKKKKAKKAKKSKRRLPNANEMPSEKATIVFVP  426

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
            T+   + + Q     G         +    ++G    H RKQ L  F+ G    L+ TDV
Sbjct  427  TRHHVEYVTQLLKNCG---------YLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDV  477

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            AARG+DI  +  VIN +LP   + ++HR+GR  RA   G A S+V+
Sbjct  478  AARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS  523


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 37/60 (62%), Gaps = 0/60 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F+  G+   +   + +  +  PT IQ ++IPLIL   D++  A TGSGKT AF +P+I+
Sbjct  127  SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE  186


>sp|Q1EB85|DBP5_COCIM ATP-dependent RNA helicase DBP5 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DBP5 PE=3 SV=1
Length=495

 Score = 115 bits (288),  Expect = 8e-26, Method: Compositional matrix adjust.
 Identities = 94/351 (27%), Positives = 153/351 (44%), Gaps = 73/351 (21%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            +P+AL++ PSRELA Q +  I+    +++       L +      +          IVVG
Sbjct  165  SPQALVLAPSRELARQIVGVIQAMGTFVEG------LFVATAVPMEMNRNQRVEASIVVG  218

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            TPG + DL+     N   +R LVLDEAD +L  QG  D   R+ + +P      + +QV+
Sbjct  219  TPGTVQDLIKKRLFNTQHLRVLVLDEADNMLDQQGLGDQCIRVKSLLP------RTIQVV  272

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT   F V + + K       + LK E+   + +  + +                  
Sbjct  273  LFSATFPDF-VVRYAHKFAPNSNQLTLKHEELTVEGIKQLYLDCE---------------  316

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
               D H                      K E  V+      +  +IIF +T+     +E+
Sbjct  317  --SDEH----------------------KYEILVKFYGLLTIGSSIIFVKTRASAAEIER  352

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
              + +G          + V L G  +  +R + ++RF+ G  + LI T+V ARGID+  V
Sbjct  353  RMVAEG---------HTVVSLTGGIEGQKRDEIIDRFRNGTAKVLITTNVLARGIDVSTV  403

Query  585  PYVINVTLPD-----------EKQNYVHRIGRVGRAERMGLAISLVATEKE  624
              VIN  +P+           + Q Y+HRIGR GR  R+G+A+S V+ ++E
Sbjct  404  SMVINYDIPELHLPGAARRMADAQTYLHRIGRTGRFGRVGVAVSFVSNQEE  454


 Score = 39.3 bits (90),  Expect = 0.15, Method: Compositional matrix adjust.
 Identities = 18/63 (29%), Positives = 37/63 (59%), Gaps = 2/63 (3%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAA--ETGSGKTGAFSI  58
            + +F E+G+   I   + +M++  P+ IQ  ++PL++      M A  ++G+GKT AF +
Sbjct  91   IKSFEELGLAEPIQMGLSKMNFRRPSKIQERALPLLMANPPTNMIAQSQSGTGKTAAFVL  150

Query  59   PVI  61
             ++
Sbjct  151  NIL  153


>sp|A7TK55|IF4A_VANPO ATP-dependent RNA helicase eIF4A OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 
21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=TIF1 PE=3 SV=1
Length=396

 Score = 114 bits (284),  Expect = 8e-26, Method: Compositional matrix adjust.
 Identities = 100/337 (30%), Positives = 155/337 (46%), Gaps = 59/337 (18%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            AP+ALI+ P+RELA Q    +     ++D   ++    IGG +  +    L++   IVVG
Sbjct  91   APQALILAPTRELALQIQKVVIALAFHMD---VKVHACIGGTSFVEDTEGLKDA-QIVVG  146

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGR+ D +   +     ++  +LDEAD +LS G+ + I ++   +P  T      QV++
Sbjct  147  TPGRVSDNIQRHRFKTDNIKMFILDEADEMLSSGFREQIYQIFTMLPPTT------QVVL  200

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SATL   DV +++ K M  P  + +K                  K +   E + + +I 
Sbjct  201  LSATLPG-DVLEVTTKFMRNPIRILVK------------------KDELTLEGIKQFYIN  241

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
             ++   K                   L   Y   ++      QA+IFC T+   + L Q 
Sbjct  242  VEEEQYK----------------FDCLSDLYDSISVT-----QAVIFCNTRRKVEELTQK  280

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
              +           F+   ++ D    ER   ++ F+ G  R LI TD+ ARGID+  V 
Sbjct  281  LTESN---------FTVSSIYSDLPQQERDVIMKEFRSGSSRILISTDLLARGIDVQQVS  331

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             VIN  LP  K+NY+HRIGR GR  R G+AI+ V  E
Sbjct  332  LVINYDLPTNKENYIHRIGRGGRFGRKGVAINFVTNE  368


 Score = 40.8 bits (94),  Expect = 0.042, Method: Compositional matrix adjust.
 Identities = 24/69 (35%), Positives = 39/69 (57%), Gaps = 0/69 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F +M +  E+ + V    +  P+ IQ  +I  I+   DVL  A++G+GKTG FSI  +Q 
Sbjct  25  FDDMNLKDELLKGVYGYGFEEPSAIQQRAILPIVEEHDVLAQAQSGTGKTGTFSIAALQR  84

Query  64  VYETLKDQQ  72
           +  ++K  Q
Sbjct  85  IDSSIKAPQ  93


>sp|Q6BQ61|RRP3_DEBHA ATP-dependent rRNA helicase RRP3 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 
/ JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=RRP3 PE=3 SV=2
Length=477

 Score = 115 bits (287),  Expect = 8e-26, Method: Compositional matrix adjust.
 Identities = 101/349 (29%), Positives = 152/349 (44%), Gaps = 62/349 (18%)

Query  290  LIVEPSRELAEQTLNNIKQ-FKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            L++ P+RELA Q    IK+ F     +  LR + I+GG+   DQ   L     I+V TPG
Sbjct  137  LVLAPTRELAYQ----IKETFDALGSSMGLRSVCIVGGMDMMDQARDLMRKPHILVATPG  192

Query  349  R-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            R +D L  T   +L  +++LV+DEAD LL   +   ++++   IP   +        + S
Sbjct  193  RIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKIIPTQRT------TYLFS  246

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+ +  + KL    +H P  V +  +    D                   L +S +   
Sbjct  247  ATMTN-KIAKLQRASLHNPVRVAVSNKYQTADN------------------LVQSMMLVS  287

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
            D +                      K  Y +  + E      IIF RT   C +      
Sbjct  288  DGY----------------------KNTYLIHLLNEFLGKSIIIFTRT---CAH------  316

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
             Q      +   FS V LHG     +R  +L +FK G    LI TDVAARG+DI  V  V
Sbjct  317  SQRTALLARILGFSAVPLHGQLTQAQRLGSLNKFKAGKANILIATDVAARGLDIPSVDIV  376

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGK  636
            IN  +P + + Y+HR+GR  RA + G +ISL+     +++  + S  GK
Sbjct  377  INYDIPTDSKAYIHRVGRTARAGKSGKSISLITQYDLEMYLRIESVLGK  425


 Score = 71.2 bits (173),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 50/64 (78%), Gaps = 0/64 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F+E+ ++PE+ +A+++M +  PT IQ+E+IP  L G D++  A+TGSGKT AF+IP++Q
Sbjct  66   SFNELKLIPELLEAIQQMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQ  125

Query  63   IVYE  66
             ++E
Sbjct  126  ALWE  129


>sp|A5E6W6|RRP3_LODEL ATP-dependent rRNA helicase RRP3 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=RRP3 PE=3 SV=1
Length=504

 Score = 115 bits (288),  Expect = 8e-26, Method: Compositional matrix adjust.
 Identities = 109/385 (28%), Positives = 175/385 (45%), Gaps = 75/385 (19%)

Query  277  VTQTKFLPNAPK-ALIVEPSRELAEQTLNNIKQ-FKKYIDNPKLRELLIIGGVAARDQLS  334
            + QT +    P  AL++ P+RELA Q    IK+ F     +  LR + IIGG++  +Q  
Sbjct  156  ILQTLYTAAQPYYALVLAPTRELAFQ----IKETFDALGSSMGLRSVCIIGGMSMMEQAR  211

Query  335  VLENGVDIVVGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ  393
             L     +++ TPGRL D L  T   +L ++++LV+DE D ++   Y+  I+++  QIP 
Sbjct  212  DLMRKPHVIIATPGRLIDHLEHTKGFSLKKLQYLVMDEVDRMIDLDYAKAIDQILKQIP-  270

Query  394  VTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTD  453
                 +R+  +  +AT+ S +++K  ++ ++ P  V++   + VPD +   +   +P T 
Sbjct  271  ---SHQRITYLY-TATM-SREIEKF-KRSLNSPVQVEIVKLEKVPDKLKQTMCLTSPNT-  323

Query  454  RLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFC  513
                                                   K    ++ +    M + IIF 
Sbjct  324  ---------------------------------------KDTRLIQIVNLDSMKRVIIFT  344

Query  514  RTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTD  573
            RT +         +  G         F CV LHG      R   + +FK G    L+ TD
Sbjct  345  RTVVHTRRCCLMLLNLG---------FKCVELHGQMPQSRRLGAINKFKAG-TPILVATD  394

Query  574  VAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
            VAARG+DI  V  VIN  +PD    Y+HR+GR  RA + G AISLV     + +  + ++
Sbjct  395  VAARGLDIPAVDLVINYDIPDPTL-YIHRVGRTARAGKAGKAISLVTQYDLESYLRIENT  453

Query  634  RGKGCYNTRL-KEDGGCTIWYNEMQ  657
             G     T+L KED    +  +EMQ
Sbjct  454  LG-----TKLPKED----LPLDEMQ  469


 Score = 68.2 bits (165),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 46/63 (73%), Gaps = 0/63 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F+E  ++PE+ ++++ + +  PT IQA +IP  L G D++  AETGSGKT AF+IP++Q
Sbjct  99   SFTEFDLVPELLESIQSLKYTQPTPIQAAAIPHALQGKDIVGIAETGSGKTAAFAIPILQ  158

Query  63   IVY  65
             +Y
Sbjct  159  TLY  161


>sp|Q8X0X2|DBP5_NEUCR ATP-dependent RNA helicase dbp-5 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=dbp-5 PE=3 SV=1
Length=483

 Score = 115 bits (287),  Expect = 8e-26, Method: Compositional matrix adjust.
 Identities = 97/347 (28%), Positives = 160/347 (46%), Gaps = 74/347 (21%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGV--D  341
            P+ P+AL++ PSRELA Q    ++   ++ +N  + E  I G ++        E GV   
Sbjct  143  PHQPQALLLAPSRELARQIQTVVQTIGQFCEN-LIVEAAIPGAISR-------ETGVRGS  194

Query  342  IVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVTSDGKR  400
            +VVGTPG + DLV   + ++SQ++ LV+DEAD +L  QG  D   R+ N +P      K 
Sbjct  195  VVVGTPGTVMDLVKRRQFDISQLKVLVIDEADNMLDQQGLGDQCVRVKNMLP------KT  248

Query  401  LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLG  460
            +Q+++ SAT          +K++ F                           +R      
Sbjct  249  IQILLFSAT--------FPDKVLRF--------------------------AERFAPNAN  274

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
            +  ++  ++  K  ++   + P    +   IL   Y +  I       ++IF RT+   +
Sbjct  275  QMKLKHKELTVKGISQMFMDCP-TEKDKYDILCKLYGLMTI-----GSSVIFVRTRETAN  328

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             +++         +  GH+ S   LHG  +   R   L+ F+ G  + LI T+V ARGID
Sbjct  329  EIQKRM-------EADGHKVS--ALHGAYEGQSRDVLLDEFRSGRSKVLITTNVLARGID  379

Query  581  IHGVPYVINVTLP--------DEKQNYVHRIGRVGRAERMGLAISLV  619
            +  V  VIN  +P         + + Y+HRIGR GR  R+G++IS V
Sbjct  380  VSSVSMVINYDIPMKGPGEREPDAETYLHRIGRTGRFGRVGVSISFV  426


 Score = 35.0 bits (79),  Expect = 2.7, Method: Compositional matrix adjust.
 Identities = 15/63 (24%), Positives = 40/63 (63%), Gaps = 2/63 (3%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGG--DVLMAAETGSGKTGAFSI  58
            +++F E+G+   + + +  +++  P+ +Q + +PL+L     +++  +++G+GKT AF +
Sbjct  73   VSSFDELGLPEAVNRGLLAINFKKPSKVQEKCLPLMLSDPPRNMIAQSQSGTGKTAAFVL  132

Query  59   PVI  61
             V+
Sbjct  133  TVL  135


>sp|Q4WJE9|RRP3_ASPFU ATP-dependent rRNA helicase rrp3 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC 
A1100 / Af293) OX=330879 GN=rrp3 PE=3 SV=1
Length=472

 Score = 115 bits (287),  Expect = 8e-26, Method: Compositional matrix adjust.
 Identities = 101/364 (28%), Positives = 156/364 (43%), Gaps = 59/364 (16%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P +   LI+ P+RELA Q   + +     I+   +R  +I+GG+    Q   L     I+
Sbjct  118  PQSFFGLILAPTRELAFQISKSFESLGSTIN---VRCAVIVGGMDMVSQSIALGKKPHII  174

Query  344  VGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            V TPGRL D L +T   +L  +++LV+DEAD LL   +   ++++   +P      +  +
Sbjct  175  VATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLP------RERR  228

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
              + SAT+ S  V+ L    +  P  V      SV    +  V             L +S
Sbjct  229  TFLFSATMSS-KVESLQRASLSNPLRV------SVSSNKYQTV-----------STLLQS  270

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
            ++     H                      K  Y V  + E      IIF RT  +   +
Sbjct  271  YLFLPHKH----------------------KDIYLVYLLNEFVGQSTIIFTRTVHETQRI  308

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
               F+ +  G       F  + LHG      R   L +F+      L+ TDVAARG+DI 
Sbjct  309  S--FLLRSLG-------FGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIP  359

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTR  642
             V  V+N  LP + + YVHR+GR  RA + G+AIS V     ++W  +  + GK      
Sbjct  360  SVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWLRIEGALGKKLKEYE  419

Query  643  LKED  646
            L++D
Sbjct  420  LEKD  423


 Score = 70.1 bits (170),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 47/64 (73%), Gaps = 0/64 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F ++G++ ++ +A E M +  PT IQAESIPL L G D++  AETGSGKT AF++P++Q
Sbjct  53   SFKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQ  112

Query  63   IVYE  66
             + E
Sbjct  113  ALME  116


>sp|Q6FKN8|DBP5_CANGA ATP-dependent RNA helicase DBP5 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP5 PE=3 SV=1
Length=504

 Score = 115 bits (288),  Expect = 8e-26, Method: Compositional matrix adjust.
 Identities = 113/381 (30%), Positives = 174/381 (46%), Gaps = 73/381 (19%)

Query  250  PPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQF  309
            PP++  +A S++  G       +  ++V +T+   N P+A+ + PSRELA QTL  I++ 
Sbjct  152  PPRN-MIAQSQSGTGKTAAFSLTMLSRVDETQ---NVPQAICLAPSRELARQTLEVIQEM  207

Query  310  KKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVL  369
             KY    K+   LI+     ++     +   ++VVGTPG L DL+    + L  V+  VL
Sbjct  208  GKYT---KITTQLIVPDSFEKNT----KINANVVVGTPGTLLDLIRRKLIQLQNVKIFVL  260

Query  370  DEADGLLS-QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTW  428
            DEAD +L  QG  D   R+   +P+ T      Q+++ SAT     VK  ++K++     
Sbjct  261  DEADNMLDKQGLGDQCIRVKKFLPKDT------QLVLFSATFADA-VKAYAQKVIPNANT  313

Query  429  VDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEA  488
            ++L+  +     +  + +  N                 D+ H            E+  E 
Sbjct  314  LELQRNEVNVKAIKQLYMDCN-----------------DEAHKY----------EVLCEL  346

Query  489  IKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGD  548
              +L             +  +IIF   K D  NL        G    +GHQ S   LH D
Sbjct  347  YGLLT------------IGSSIIFVAKK-DTANL------LYGKLKHEGHQVSI--LHSD  385

Query  549  RKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD------EKQNYVHR  602
             +  ER + ++ F++G  + LI T+V ARGIDI  V  V+N  LP       +   YVHR
Sbjct  386  LRTDERDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGMPDYATYVHR  445

Query  603  IGRVGRAERMGLAISLVATEK  623
            IGR GR  R G+AIS V  +K
Sbjct  446  IGRTGRFGRTGVAISFVHDKK  466


 Score = 49.3 bits (116),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 22/69 (32%), Positives = 44/69 (64%), Gaps = 2/69 (3%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGG--DVLMAAETGSGKTGAFSI  58
            + +F E+G+ PE+ + +  M +  P+ IQ  ++PL+L     +++  +++G+GKT AFS+
Sbjct  113  VKSFDELGLSPELLKGIYAMKFQKPSKIQERALPLLLSNPPRNMIAQSQSGTGKTAAFSL  172

Query  59   PVIQIVYET  67
             ++  V ET
Sbjct  173  TMLSRVDET  181


>sp|P93008|RH21_ARATH DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis 
thaliana OX=3702 GN=RH21 PE=2 SV=1
Length=733

 Score = 117 bits (292),  Expect = 9e-26, Method: Compositional matrix adjust.
 Identities = 95/355 (27%), Positives = 158/355 (45%), Gaps = 64/355 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P A+++ P+RELA+Q      +F  Y+     R   I+GG +  +Q   +  G +IV+ T
Sbjct  390  PYAVVMAPTRELAQQIEEETVKFAHYLG---FRVTSIVGGQSIEEQGLKITQGCEIVIAT  446

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ---------VTSD  397
            PGRL D +      L+Q  ++VLDEAD ++  G+   +  + + +P             D
Sbjct  447  PGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEELD  506

Query  398  GKRL--QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL  455
             K++     + SAT+    V++L+ K +  P  V +       D +   V+         
Sbjct  507  EKKIYRTTYMFSATMPP-GVERLARKYLRNPVVVTIGTAGKTTDLISQHVI---------  556

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRT  515
                                        M  E+ K  + +  +  + E     AI+F  T
Sbjct  557  ----------------------------MMKESEKFFRLQKLLDELGEK---TAIVFVNT  585

Query  516  KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA  575
            K +CD++ +         DK G++ +   LHG +   +R+ +LE F+      L+ TDV 
Sbjct  586  KKNCDSIAKNL-------DKAGYRVTT--LHGGKSQEQREISLEGFRAKRYNVLVATDVV  636

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
             RGIDI  V +VIN  +P   + Y HRIGR GRA + G+A S +     +V+Y +
Sbjct  637  GRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLTLHDTEVFYDL  691


 Score = 51.2 bits (121),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 26/64 (41%), Positives = 39/64 (61%), Gaps = 0/64 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M ++ E  +  E+ +AVE   +  P+ IQ  +IPL L   DV+  AETGSGKT AF +P+
Sbjct  312  MRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM  371

Query  61   IQIV  64
            +  +
Sbjct  372  LAYI  375


>sp|A5A6N4|IF4A1_PANTR Eukaryotic initiation factor 4A-I OS=Pan 
troglodytes OX=9598 GN=EIF4A1 PE=2 SV=1
Length=406

 Score = 114 bits (284),  Expect = 9e-26, Method: Compositional matrix adjust.
 Identities = 112/398 (28%), Positives = 179/398 (45%), Gaps = 65/398 (16%)

Query  249  FPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQ  308
             P   G+  +++A  G   K+     + + Q +    A +AL++ P+RELA+Q    +  
Sbjct  64   LPCIKGYDVIAQAQSG-TGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMA  122

Query  309  FKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGTPGRLDDLVSTGKLNLSQVRFL  367
               Y+          IGG   R ++  L+     I+VGTPGR+ D+++   L+   ++  
Sbjct  123  LGDYMGASCHA---CIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMF  179

Query  368  VLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPT  427
            VLDEAD +LS+G+ D I  +  ++   T      QV++ SAT+ S DV ++++K M  P 
Sbjct  180  VLDEADEMLSRGFKDQIYDIFQKLNSNT------QVVLLSATMPS-DVLEVTKKFMRDPI  232

Query  428  WVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSE  487
             + +K E+   + +    + V        ER                        E W  
Sbjct  233  RILVKKEELTLEGIRQFYINV--------ER------------------------EEWK-  259

Query  488  AIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHG  547
             +  L   Y    I      QA+IF  T+   D L +               F+   +HG
Sbjct  260  -LDTLCDLYETLTIT-----QAVIFINTRRKVDWLTEKM---------HARDFTVSAMHG  304

Query  548  DRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVG  607
            D    ER   +  F+ G  R LI TD+ ARGID+  V  VIN  LP  ++NY+HRIGR G
Sbjct  305  DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG  364

Query  608  RAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            R  R G+ I++V  E ++    +     +  YNT ++E
Sbjct  365  RFGRKGVTINMVTEEDKRTLRDI-----ETFYNTSIEE  397


 Score = 38.1 bits (87),  Expect = 0.25, Method: Compositional matrix adjust.
 Identities = 20/70 (29%), Positives = 38/70 (54%), Gaps = 0/70 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F +M +   + + +    +  P+ IQ  +I   + G DV+  A++G+GKT  F+I ++Q
Sbjct  33   SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ  92

Query  63   IVYETLKDQQ  72
             +   LK  Q
Sbjct  93   QIELDLKATQ  102


>sp|Q2FY15|CSHB_STAA8 DEAD-box ATP-dependent RNA helicase CshB 
OS=Staphylococcus aureus (strain NCTC 8325 / PS 47) OX=93061 
GN=cshB PE=3 SV=1
Length=448

 Score = 114 bits (286),  Expect = 9e-26, Method: Compositional matrix adjust.
 Identities = 99/402 (25%), Positives = 178/402 (44%), Gaps = 71/402 (18%)

Query  287  PKALIVEPSRELAEQ---TLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P+A++V P+RELA+Q     N++ QFK  +        + IGG               ++
Sbjct  73   PQAIVVAPTRELAQQLYDAANHLSQFKAGVSVK-----VFIGGTDIEKDRQRCNAQPQLI  127

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            +GTP R++DL  TG L++    +LV+DEAD ++  G  + ++ +  ++    +      +
Sbjct  128  IGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNAN------I  181

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
             V SAT+    ++    K +  P +V +  +      +   ++P                
Sbjct  182  AVFSATIPQ-QLQPFLNKYLSHPEYVAVDSKKQNKKNIEFYLIPTK--------------  226

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                          GA   E     I IL                 IIFC ++ + ++L 
Sbjct  227  --------------GAAKVEKTLNLIDILNPYLC------------IIFCNSRDNANDLA  260

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
            +   + G              +HG   P ERKQ ++R +  + +++I +D+A+RGIDI G
Sbjct  261  RSLNEAG---------IKVGMIHGGLTPRERKQQMKRIRNLEFQYVIASDLASRGIDIEG  311

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG-CYNTR  642
            V +VIN  +P++   + HR+GR GR    G+AI+L + ++E   +++     +G  +NT 
Sbjct  312  VSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEE---HNISLIEDRGFVFNTV  368

Query  643  LKEDGGC--TIWYNEMQLLSEIEEHL-NCTISQVEPDIKVPV  681
              +DG       +N+ Q     ++HL N   ++V   IK  V
Sbjct  369  DIKDGELKEVKAHNQRQARMRKDDHLTNQVKNKVRSKIKNKV  410


 Score = 49.3 bits (116),  Expect = 9e-05, Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 44/69 (64%), Gaps = 0/69 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F +  +   +  AV+++++  PT+IQ   IP IL   +++  ++TG+GK+ AF +P++Q+
Sbjct  6   FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLLPLMQL  65

Query  64  VYETLKDQQ  72
           +   +K+ Q
Sbjct  66  IDSEIKEPQ  74


>sp|Q5GUR8|RHLB_XANOR ATP-dependent RNA helicase RhlB OS=Xanthomonas 
oryzae pv. oryzae (strain KACC10331 / KXO85) OX=291331 
GN=rhlB PE=3 SV=2
Length=574

 Score = 116 bits (290),  Expect = 9e-26, Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 155/336 (46%), Gaps = 58/336 (17%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P  P+ALI+ P+RELA Q   +  +F   +    LR  L+ GGV    Q  +L+ GVD++
Sbjct  82   PEDPRALILAPTRELAIQIHKDAVKFGADLG---LRFALVYGGVDYDKQRELLQQGVDVI  138

Query  344  VGTPGRLDDLVSTGKL-NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            + TPGRL D V   K+ +L      VLDEAD +   G+   I  +  ++P+    G R Q
Sbjct  139  IATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPE---RGTR-Q  194

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
             ++ SATL S  V +L+ + M+ P  + ++ E                   R+ +R+   
Sbjct  195  TLLFSATL-SHRVLELAYEHMNEPEKLVVETETIT--------------AARVRQRI---  236

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
            +  +DD              E  +  + +L      R +         +F  TK   + +
Sbjct  237  YFPSDD--------------EKQTLLLGLLSRSEGARTM---------VFVNTKAFVERV  273

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
             +           + H +    L GD    +R+  L RF+KG +  L+ TDVAARG+ I 
Sbjct  274  ARTL---------ERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHID  324

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            GV YV N  LP + ++YVHRIGR  R    G AIS 
Sbjct  325  GVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF  360


 Score = 43.5 bits (101),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 23/58 (40%), Positives = 34/58 (59%), Gaps = 0/58 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
           FS   + P +   +E   +   T IQA ++P+ L GGDV   A+TG+GKT AF + V+
Sbjct  11  FSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVM  68


>sp|A6SBT4|DBP5_BOTFB ATP-dependent RNA helicase dbp5 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=dbp5 PE=3 SV=1
Length=470

 Score = 114 bits (286),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 96/349 (28%), Positives = 158/349 (45%), Gaps = 71/349 (20%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P  P+AL + PSRELA Q    I+   +++D   + +  I G V    +++ +     +V
Sbjct  138  PTTPQALCLAPSRELARQIEGVIRSIGQFVDGLTV-QAAIPGAVERNAKVNAM-----VV  191

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQ  402
            VGTPG + DL+    ++ SQ++ L LDEAD +L  QG  D   R+ + I       +  Q
Sbjct  192  VGTPGTVMDLIKRRSIDASQMKILCLDEADNMLDQQGLGDQCMRVKSMI-------RVEQ  244

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
            +++ SAT                            PD V+      +P+ + +       
Sbjct  245  ILLFSATF---------------------------PDEVYGFAQDFSPRANEI-------  270

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
             ++ D++      +   + P       ++ K E  V+      +  +IIF + +    N+
Sbjct  271  KLKRDELTVSGIKQMFMDCPN------EVGKYEILVKLYGLMTIGSSIIFVKRRDTASNI  324

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
             +          K+GH+ + V  HG  +  ER Q LE F++G  + LI T+V ARGID+ 
Sbjct  325  AERLT-------KEGHKVAAV--HGAFEGSERDQVLEDFRQGKAKVLITTNVLARGIDVQ  375

Query  583  GVPYVINVTLPDE--------KQNYVHRIGRVGRAERMGLAISLVATEK  623
             V  VIN  +P +         + Y+HRIGR GR  R+G++IS V   K
Sbjct  376  SVSMVINYDVPMKGRSDSDPPPETYLHRIGRTGRFGRVGVSISFVFDRK  424


 Score = 37.7 bits (86),  Expect = 0.35, Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 38/60 (63%), Gaps = 2/60 (3%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSIPVI  61
            F ++G+   I + +  M++  P+ IQ +++PL+L     +++  +++G+GKT AF I ++
Sbjct  71   FEQLGIDASILKGLYAMNFKKPSKIQEKALPLLLRNPPTNMIAQSQSGTGKTAAFVITIL  130


>sp|A1CMQ7|SUB2_ASPCL ATP-dependent RNA helicase sub2 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=sub2 PE=3 SV=1
Length=441

 Score = 114 bits (285),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 101/356 (28%), Positives = 161/356 (45%), Gaps = 60/356 (17%)

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            Q + +P     L++  +RELA Q  N   +F KY+  P ++  +  GG   +  + VL N
Sbjct  119  QLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYL--PDVKTAVFYGGTPIQKDVEVLSN  176

Query  339  G---VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
                 +IVVGTPGRL+ LV   KL+L  V+  VLDE D +L Q     + R   +I + T
Sbjct  177  KESYPNIVVGTPGRLNALVRDKKLSLRNVKAFVLDECDKMLDQID---MRRDVQEIFRAT  233

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL  455
               K  QV++ SATL S +++ + +K M  P  V +  +D    T+H +         + 
Sbjct  234  PADK--QVMMFSATL-SQEIRPICKKFMRNPLEVYV--DDDTKLTLHGL--------QQY  280

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRT  515
            + +L +S                              K       +   + +Q IIF ++
Sbjct  281  YIKLSESE-----------------------------KNRKLNELLDSLEFNQVIIFVKS  311

Query  516  KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA  575
             +  + L++           +   F  + +H      ER +  + FK+ + R  + TDV 
Sbjct  312  TLRANELDKLL---------RECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVF  362

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE-KEKVWYHV  630
             RGIDI  +   IN  LP +  +Y+HR+GR GR    GL+IS V+ E  EKV   +
Sbjct  363  GRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSNEDDEKVLKEI  418


>sp|A5DY34|DRS1_LODEL ATP-dependent RNA helicase DRS1 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DRS1 PE=3 SV=1
Length=686

 Score = 116 bits (291),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 90/335 (27%), Positives = 159/335 (47%), Gaps = 58/335 (17%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            + KA+I+ P+RELA Q  +  ++  +++ N  L   + +GG++ + Q   L+   DIV+ 
Sbjct  266  STKAIILTPTRELAIQVHDVGRKLGQFVSN--LNFGMAVGGLSLKQQEQQLKTRPDIVIA  323

Query  346  TPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            TPGRL D + ++   ++  V+ L++DEAD +L +G+ + +  + + IP+     ++ Q +
Sbjct  324  TPGRLIDHIRNSPSFSVEDVQVLIIDEADRMLEEGFQEELTEILSLIPK-----QKRQTL  378

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT+++  ++ L +  ++ P  V +    +V   +    V +     R  E L     
Sbjct  379  LFSATMNNTKIQDLVQLSLNKPIKVSIDPPRTVASKLEQQFVRI-----RKREEL-----  428

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                             P +    +K L+G             + ++F RTK++      
Sbjct  429  ----------------KPAVLYLLLKKLEG-------------RTVVFTRTKVEA-----  454

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
                            +   LHG     +R  N++ F K +V  LICTD+AARG+DI  +
Sbjct  455  ----HKLRIILGLLGLTVAELHGALTQEQRLANVKAF-KNNVNVLICTDLAARGLDIR-I  508

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
             YVIN  +P   + Y HR+GR  RA R G +IS V
Sbjct  509  EYVINYDMPKTYEIYTHRVGRTARAGRKGTSISFV  543


 Score = 57.8 bits (138),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 43/60 (72%), Gaps = 0/60 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F E+ +   I ++++++ + +PT +QA +IP+ L G D++ +A+TGSGKT A+ IP+I+
Sbjct  197  TFQELQLSRPILKSLQQLGFTVPTPVQASTIPIALLGKDIVASAQTGSGKTAAYLIPIIE  256


>sp|Q40469|IF4A6_TOBAC Eukaryotic initiation factor 4A-6 (Fragment) 
OS=Nicotiana tabacum OX=4097 PE=2 SV=1
Length=253

 Score = 110 bits (274),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 84/304 (28%), Positives = 137/304 (45%), Gaps = 60/304 (20%)

Query  342  IVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL  401
            +VVGTPGR+ D++    L    ++  VLDEAD +LS+G+ D I  +   +P       ++
Sbjct  2    VVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLP------PKI  55

Query  402  QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK  461
            QV + SAT+   +  +++ K M+ P  + +K ++   + +    V V+            
Sbjct  56   QVGIFSATMPP-EALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDK-----------  103

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
                                 E W   ++ L   Y   AI      Q++IF  T+   D 
Sbjct  104  ---------------------EEWK--LETLCDLYETLAIT-----QSVIFVNTRRKVDW  135

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            L             +G   +    HGD   + R   +  F+ G  R LI TD+ ARGID+
Sbjct  136  LTDKM---------RGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDV  186

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
              V  VIN  LP + +NY+HRIGR GR  R G++I+ V  + E++ + +     +  YN 
Sbjct  187  QQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTKDDERMLFDI-----QKFYNV  241

Query  642  RLKE  645
             ++E
Sbjct  242  VIEE  245


>sp|A1CNV8|DRS1_ASPCL ATP-dependent RNA helicase drs1 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=drs1 PE=3 SV=1
Length=826

 Score = 117 bits (292),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 151/340 (44%), Gaps = 57/340 (17%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +  I+ P+RELA Q  N   +   + D   +    ++GG + R+Q ++L+   D+++ TP
Sbjct  379  RVAILMPTRELAVQCYNVATKLATHTD---VTFCQLVGGFSLREQENILKKRPDVIIATP  435

Query  348  GR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            GR +D + ++    +  +  LVLDEAD +L  G++D +N +   IP      K  Q ++ 
Sbjct  436  GRFIDHMRNSPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIP------KSRQTMLF  489

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT+    V KL    ++ P  + +  + +    +    V + P   R  +RLG      
Sbjct  490  SATMTD-SVDKLIRVGLNRPVRLMVDSKKNTSMNLTQEFVRLRPG--REGKRLG------  540

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                                         Y +    E    + I+F R K +   +   F
Sbjct  541  -----------------------------YLLYLCSEIFTGRVIVFFRQKKEAHRVRIVF  571

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
               G              LHG     +R +++E F++G V FL+ TD+A+RG+DI GV  
Sbjct  572  GLLG---------LKAAELHGSMSQEQRIKSVESFREGKVAFLLATDLASRGLDIKGVET  622

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
            VIN   P   + Y+HR+GR  RA R G A ++ A    KV
Sbjct  623  VINYEAPQSHEIYLHRVGRTARAGRSGRACTIAADPDRKV  662


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 39/60 (65%), Gaps = 0/60 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F +  +   I + +  +++  PT IQ ++IP+ L G D++ +A TGSGKT AF +P+++
Sbjct  307  SFQDFNLSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILE  366


>sp|A5DZX2|DBP5_LODEL ATP-dependent RNA helicase DBP5 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP5 PE=3 SV=1
Length=511

 Score = 115 bits (287),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 103/360 (29%), Positives = 161/360 (45%), Gaps = 97/360 (27%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            AP+ + + P+RELA QTL  ++   KY     +   L++     R Q         ++VG
Sbjct  186  APQCICLAPTRELARQTLEVVETMGKY---SNITYQLVVPDSVPRGQAI----SAQVLVG  238

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            TPG + DL++   +N+++V+  VLDEAD +L +QG +D   R+  ++P      +  Q++
Sbjct  239  TPGIVHDLINRKAINVAKVKVFVLDEADNMLDAQGLADTCLRVKKRLP------RDCQLV  292

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT               FPT V    E  VP+                         
Sbjct  293  LFSAT---------------FPTEVRKYAEKFVPN-------------------------  312

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKI--LKGEYAVRAIKEHKMD------------QAI  510
                          ANS  +  E + +  +K  Y     +EHK +             +I
Sbjct  313  --------------ANSLALKQEELNVKGIKQLYMDCKNQEHKFEVLCELYGLLTIGSSI  358

Query  511  IFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLI  570
            IF   K   D+L  Y   +     ++GH  S   LHG  +  +R + ++ F++G  + LI
Sbjct  359  IFVEQKATADSL--YLRMK-----EEGHTVSI--LHGGLEVADRDRLIDDFREGRSKVLI  409

Query  571  CTDVAARGIDIHGVPYVINVTLPDEKQ------NYVHRIGRVGRAERMGLAISLVATEKE  624
             T+V ARGIDI  V  V+N  LP  K+       Y+HRIGR GR  R+G+++S VA EK+
Sbjct  410  TTNVLARGIDIATVSMVVNYDLPRTKEGRPDPSTYLHRIGRTGRFGRVGVSVSFVANEKD  469


 Score = 47.8 bits (112),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 22/74 (30%), Positives = 47/74 (64%), Gaps = 2/74 (3%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            + +F E+G+ PE+ + +  M +  P+ IQ  ++PL++     +++  +++G+GKT AFS+
Sbjct  115  VKSFEELGLKPELLKGLYAMKFNKPSKIQERALPLLISNPPKNMIGQSQSGTGKTAAFSL  174

Query  59   PVIQIVYETLKDQQ  72
             ++  V E++K  Q
Sbjct  175  TMLSRVDESIKAPQ  188


>sp|Q810A7|DDX42_MOUSE ATP-dependent RNA helicase DDX42 OS=Mus 
musculus OX=10090 GN=Ddx42 PE=1 SV=3
Length=929

 Score = 117 bits (292),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 96/335 (29%), Positives = 147/335 (44%), Gaps = 57/335 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P A+IV P+REL +Q     K+F K  +   LR + + GG +  +Q   L+ G +IVV
Sbjct  325  DGPIAVIVCPTRELCQQIHAECKRFGKAYN---LRSVAVYGGGSMWEQAKALQEGAEIVV  381

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D V     NL +V +LV DEAD +   G+   +  + +    V  D    Q +
Sbjct  382  CTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASH---VRPD---RQTL  435

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT     ++KL+  I+  P  V           V   +   N    ++ E L     
Sbjct  436  LFSATFRK-KIEKLARDILIDPIRV-----------VQGDIGEANEDVTQIVEIL-----  478

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                           + P  W+   +        R ++       ++F   K + + L  
Sbjct  479  --------------HSGPSKWNWLTR--------RLVEFTSSGSVLLFVTKKANAEELAS  516

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
               Q+G          +   LHGD    ER + +  FKK D+  L+ TDVAARG+DI  +
Sbjct  517  NLKQEG---------HNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSI  567

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
              VIN  +  +   + HRIGR GRA   G+A +L+
Sbjct  568  KTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL  602


 Score = 47.0 bits (110),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 37/60 (62%), Gaps = 0/60 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            ++F+  G   ++   + + ++  PT IQ + +P+ L G D++  A+TGSGKT AF  P++
Sbjct  253  SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML  312


>sp|Q9LFN6|RH56_ARATH DEAD-box ATP-dependent RNA helicase 56 OS=Arabidopsis 
thaliana OX=3702 GN=RH56 PE=1 SV=2
Length=427

 Score = 113 bits (283),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 154/341 (45%), Gaps = 61/341 (18%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGV-DI  342
            P    AL++  +RELA Q  N   +F  Y+ + K+   +  GGV  +    +L+N    I
Sbjct  112  PGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVS--VFYGGVNIKIHKDLLKNECPHI  169

Query  343  VVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            VVGTPGR+  L     L+L  VR  +LDE D +L    S  + R   +I ++T   K  Q
Sbjct  170  VVGTPGRVLALAREKDLSLKNVRHFILDECDKMLE---SLDMRRDVQEIFKMTPHDK--Q  224

Query  403  VIVCSATLHSFDVKKLSEKIMHFP--TWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLG  460
            V++ SATL S +++ + +K M  P   +VD + + ++   V H +        +L E + 
Sbjct  225  VMMFSATL-SKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYI--------KLSE-ME  274

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
            K+    D + A D                                 +Q +IF ++     
Sbjct  275  KNRKLNDLLDALD--------------------------------FNQVVIFVKSVSRAA  302

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             L +  ++           F  +C+H      ER    + FK+G  R L+ TD+  RGID
Sbjct  303  ELNKLLVECN---------FPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGID  353

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT  621
            I  V  VIN  +PD    Y+HR+GR GR    GLAI+ VA+
Sbjct  354  IERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVAS  394


 Score = 42.7 bits (99),  Expect = 0.011, Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 0/61 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F +  + PE+ +A+ +  +  P+++Q E IP  + G DV+  A++G GKT  F +  +
Sbjct  46   SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTL  105

Query  62   Q  62
            Q
Sbjct  106  Q  106


>sp|Q56XG6|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15 OS=Arabidopsis 
thaliana OX=3702 GN=RH15 PE=1 SV=3
Length=427

 Score = 113 bits (283),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 154/341 (45%), Gaps = 61/341 (18%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGV-DI  342
            P    AL++  +RELA Q  N   +F  Y+ + K+   +  GGV  +    +L+N    I
Sbjct  112  PGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVS--VFYGGVNIKIHKDLLKNECPHI  169

Query  343  VVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            VVGTPGR+  L     L+L  VR  +LDE D +L    S  + R   +I ++T   K  Q
Sbjct  170  VVGTPGRVLALAREKDLSLKNVRHFILDECDKMLE---SLDMRRDVQEIFKMTPHDK--Q  224

Query  403  VIVCSATLHSFDVKKLSEKIMHFP--TWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLG  460
            V++ SATL S +++ + +K M  P   +VD + + ++   V H +        +L E + 
Sbjct  225  VMMFSATL-SKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYI--------KLSE-ME  274

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
            K+    D + A D                                 +Q +IF ++     
Sbjct  275  KNRKLNDLLDALD--------------------------------FNQVVIFVKSVSRAA  302

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             L +  ++           F  +C+H      ER    + FK+G  R L+ TD+  RGID
Sbjct  303  ELNKLLVECN---------FPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGID  353

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT  621
            I  V  VIN  +PD    Y+HR+GR GR    GLAI+ VA+
Sbjct  354  IERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVAS  394


 Score = 42.7 bits (99),  Expect = 0.011, Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 0/61 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F +  + PE+ +A+ +  +  P+++Q E IP  + G DV+  A++G GKT  F +  +
Sbjct  46   SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTL  105

Query  62   Q  62
            Q
Sbjct  106  Q  106


>sp|Q9UMR2|DD19B_HUMAN ATP-dependent RNA helicase DDX19B OS=Homo 
sapiens OX=9606 GN=DDX19B PE=1 SV=1
Length=479

 Score = 114 bits (285),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 114/437 (26%), Positives = 190/437 (43%), Gaps = 108/437 (25%)

Query  256  VALSKAPDGYIVKSQHSGN--------AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIK  307
            + L++ P   I +SQ SG         A ++Q +     P+ L + P+ ELA QT   I+
Sbjct  125  LMLAEPPQNLIAQSQ-SGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIE  183

Query  308  QFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGK-LNLSQVRF  366
            Q  K+   P+L+    + G        + E    IV+GTPG + D  S  K ++  +++ 
Sbjct  184  QMGKFY--PELKLAYAVRGNKLERGQKISEQ---IVIGTPGTVLDWCSKLKFIDPKKIKV  238

Query  367  LVLDEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF  425
             VLDEAD ++ +QG+ D   R+   +P      +  Q+++ SAT     V K ++K++  
Sbjct  239  FVLDEADVMIATQGHQDQSIRIQRMLP------RNCQMLLFSATFED-SVWKFAQKVVPD  291

Query  426  PTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW  485
            P  + LK E+   DT+    V  + + ++                               
Sbjct  292  PNVIKLKREEETLDTIKQYYVLCSSRDEKF------------------------------  321

Query  486  SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL  545
             +A+  L G   +         QA+IFC T+     L            K+GHQ +   L
Sbjct  322  -QALCNLYGAITIA--------QAMIFCHTRKTASWL-------AAELSKEGHQVAL--L  363

Query  546  HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEK------QNY  599
             G+    +R   +ERF++G  + L+ T+V ARGID+  V  VIN  LP +K      + Y
Sbjct  364  SGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETY  423

Query  600  VHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLL  659
            +HRIGR GR  + GLA+++V ++                               + M +L
Sbjct  424  LHRIGRTGRFGKRGLAVNMVDSK-------------------------------HSMNIL  452

Query  660  SEIEEHLNCTISQVEPD  676
            + I+EH N  I +++ D
Sbjct  453  NRIQEHFNKKIERLDTD  469


 Score = 40.8 bits (94),  Expect = 0.049, Method: Compositional matrix adjust.
 Identities = 19/64 (30%), Positives = 39/64 (61%), Gaps = 2/64 (3%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILG--GGDVLMAAETGSGKTGAFSIPV  60
            +F E+ + P++ Q V  M +  P+ IQ  ++PL+L     +++  +++G+GKT AF + +
Sbjct  93   SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM  152

Query  61   IQIV  64
            +  V
Sbjct  153  LSQV  156


>sp|Q86XP3|DDX42_HUMAN ATP-dependent RNA helicase DDX42 OS=Homo 
sapiens OX=9606 GN=DDX42 PE=1 SV=1
Length=938

 Score = 116 bits (291),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 96/335 (29%), Positives = 147/335 (44%), Gaps = 57/335 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P A+IV P+REL +Q     K+F K  +   LR + + GG +  +Q   L+ G +IVV
Sbjct  325  DGPIAVIVCPTRELCQQIHAECKRFGKAYN---LRSVAVYGGGSMWEQAKALQEGAEIVV  381

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D V     NL +V +LV DEAD +   G+   +  + +    V  D    Q +
Sbjct  382  CTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASH---VRPD---RQTL  435

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT     ++KL+  I+  P  V           V   +   N    ++ E L     
Sbjct  436  LFSATFRK-KIEKLARDILIDPIRV-----------VQGDIGEANEDVTQIVEIL-----  478

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                           + P  W+   +        R ++       ++F   K + + L  
Sbjct  479  --------------HSGPSKWNWLTR--------RLVEFTSSGSVLLFVTKKANAEELAN  516

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
               Q+G          +   LHGD    ER + +  FKK D+  L+ TDVAARG+DI  +
Sbjct  517  NLKQEG---------HNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSI  567

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
              VIN  +  +   + HRIGR GRA   G+A +L+
Sbjct  568  KTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL  602


 Score = 47.0 bits (110),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 37/60 (62%), Gaps = 0/60 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            ++F+  G   ++   + + ++  PT IQ + +P+ L G D++  A+TGSGKT AF  P++
Sbjct  253  SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML  312


>sp|Q7ZY47|DDX42_XENLA ATP-dependent RNA helicase DDX42 OS=Xenopus 
laevis OX=8355 GN=ddx42 PE=2 SV=1
Length=947

 Score = 116 bits (291),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 94/340 (28%), Positives = 150/340 (44%), Gaps = 59/340 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P A+IV P+REL +Q  +  K+F K  +   LR + + GG +  +Q   L+ G +IVV
Sbjct  322  DGPIAVIVCPTRELCQQIHSECKRFGKAYN---LRSVAVYGGGSMWEQAKALQEGAEIVV  378

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQI-PQVTSDGKRLQV  403
             TPGRL D V     NL +V +LV DEAD +   G+   +  + N + P         Q 
Sbjct  379  CTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIANHVRPD-------RQT  431

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            ++ SAT     ++KL+  I+  P  V ++G+    +     VV + P             
Sbjct  432  LLFSATFRK-KIEKLARDILVDPIRV-VQGDIGEANEDITQVVEILP-------------  476

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                            + PE W+   +        R ++       ++F   K + + L 
Sbjct  477  ----------------SGPEKWTWLTR--------RLVEFTSTGSVLVFVTKKANAEELA  512

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
                Q                LHGD    ER + +  FKK  +  L+ TDVAARG+DI  
Sbjct  513  ANLRQD---------DHPLGLLHGDMDQSERNKVISDFKKKSIPVLVATDVAARGLDIPS  563

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
            +  V+N  +  +   + HRIGR GRA   G+A +L+ +++
Sbjct  564  IKTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTSKE  603


 Score = 47.8 bits (112),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 37/60 (62%), Gaps = 0/60 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            ++F+  G   ++   + + ++  PT IQ + IP+ L G D++  A+TGSGKT AF  P++
Sbjct  250  SSFAHFGFDEQLLHQIRKSEYTQPTPIQCQGIPVALSGRDMIGIAKTGSGKTAAFIWPIL  309


>sp|Q2UNB7|RRP3_ASPOR ATP-dependent rRNA helicase rrp3 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=rrp3 
PE=3 SV=1
Length=472

 Score = 114 bits (285),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 151/354 (43%), Gaps = 59/354 (17%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P++   L++ P+RELA Q     +     I    +R  +++GG+    Q   L     I+
Sbjct  118  PSSFFGLVLAPTRELAYQISQAFEGLGSTIS---VRSTVLVGGMDMVSQSIALGKKPHII  174

Query  344  VGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            V TPGRL D L +T   +L  +++LV+DEAD LL   +   ++++   +P      +  +
Sbjct  175  VATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPILDKILKVLP------RERR  228

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
              + SAT+ S  V+ L    +  P                 + V V+    +    L +S
Sbjct  229  TYLFSATMSS-KVESLQRASLQNP-----------------LRVAVSSSKFQTVSTLQQS  270

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
            +I     H                      K  Y V  + E      IIFCRT  +   L
Sbjct  271  YIFIPHKH----------------------KDLYLVYLLNEFVGQSCIIFCRTVHETQRL  308

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
              +F++  G        F  + LHG      R   L +F+      L+ TDVAARG+DI 
Sbjct  309  S-FFLRLLG--------FGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIP  359

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGK  636
             V  V+N  LP + + ++HRIGR  RA + G+AIS       + W  +  + GK
Sbjct  360  SVDVVLNFDLPGDSKTFIHRIGRTARAGKSGVAISFATQYDVEAWLRIEGALGK  413


 Score = 67.0 bits (162),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 47/64 (73%), Gaps = 0/64 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F E+G++ ++ +A + M +  PT IQAE+IPL L G D++  AETGSGKT AF++P++Q
Sbjct  53   SFKELGLIEQLCEACDSMGYKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALPILQ  112

Query  63   IVYE  66
             + +
Sbjct  113  ALMD  116


>sp|Q4P3U9|RRP3_USTMA ATP-dependent rRNA helicase RRP3 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=RRP3 PE=3 
SV=2
Length=561

 Score = 115 bits (287),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 142/334 (43%), Gaps = 64/334 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            A ++ P+RELA Q    ++     I    +R   I+GG+    Q   L     ++V TPG
Sbjct  185  ACVLAPTRELAYQISQQVEALGSTIG---VRSATIVGGMDMMSQSIALSKRPHVIVATPG  241

Query  349  RLDD-LVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            RL D L +T   +L  +++LV+DEAD LL   +   I+++   IP      +  + ++ S
Sbjct  242  RLQDHLENTKGFSLRGLQYLVMDEADRLLDMDFGPIIDKLLQSIP------RERRTMLFS  295

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV--HHVVVPVNPKTDRLWERLGKSHIR  465
            AT+ +  V KL    +  P  V++  + +   T+  H++ +P              +H  
Sbjct  296  ATM-TTKVAKLQRASLKNPVRVEVDTKYTTVSTLKQHYMFMPF-------------AH--  339

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                                       K  Y V    E      I+F RT  D   L   
Sbjct  340  ---------------------------KDTYLVHLANEQAGHSIIVFTRTVHDSQRLSIL  372

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
                G         F  + LHG      R   L +FK G    L+ TDVA+RG+DI  V 
Sbjct  373  LRLLG---------FPAIPLHGQLSQQARLGALNKFKTGGRSILVATDVASRGLDIPAVD  423

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
             V+N  +P   ++Y+HR+GR  RA R G +++LV
Sbjct  424  LVVNYDIPTNSKDYIHRVGRTARAGRSGRSVTLV  457


 Score = 65.1 bits (157),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 46/66 (70%), Gaps = 0/66 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS++GV+P+I +A   M +  PT IQ ++IP  L   DV+  A+TGSGKT AF+IP++Q 
Sbjct  116  FSDLGVIPQIVEACTNMGFKHPTPIQVKAIPEALQARDVIGLAQTGSGKTAAFTIPILQA  175

Query  64   VYETLK  69
            +++  K
Sbjct  176  LWDNPK  181


>sp|Q750Q4|MS116_EREGS ATP-dependent RNA helicase MSS116, mitochondrial 
OS=Eremothecium gossypii (strain ATCC 10895 / CBS 
109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=MSS116 PE=3 SV=1
Length=658

 Score = 115 bits (289),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 157/341 (46%), Gaps = 51/341 (15%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRE---LLIIGGVAARDQLSVLENGV-DIV  343
            KA+++ P+R+LA Q  N I + +    N KLR    ++++GG +  +    LE    +IV
Sbjct  199  KAVVIAPTRDLAAQIFNEINEMRNA--NRKLRRFNAVVMMGGSSRTETFRSLERRRPNIV  256

Query  344  VGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK-RL  401
            V TPGRL D++ + G    ++V F VLDEAD LL  G+   + ++++ + Q+   G   +
Sbjct  257  VATPGRLIDMLEACGPKYFTEVDFKVLDEADTLLEIGFKQALEQINDILNQLNQKGTTHI  316

Query  402  QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK  461
            + ++ SATL    V+ L+  IM+    +               +  V+P      E + +
Sbjct  317  RTLLVSATLDD-KVQSLANSIMNHAKCL--------------FIDTVDPNEQATNENIAQ  361

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVR--AIKEHKMDQAIIFCRTKIDC  519
              + + D                   A  I    Y +R  A    K+ +AI+F  T +  
Sbjct  362  KVVISKDF------------------ADNITASLYKIREEASANPKL-KAIVFMPTIVAV  402

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            +   +    Q  G          +  HG      R   ++RF+  D   L+CTDVAARG+
Sbjct  403  EYWGELLQSQCRGT-------PVLLFHGGLSQGRRNSTMKRFRAMDSGILVCTDVAARGM  455

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            D+  V +V  V +P    NY+HRIGR GRA R G +   +A
Sbjct  456  DVSDVQHVYQVGVPTSPDNYIHRIGRTGRAGRKGSSTIFLA  496


>sp|Q3ZBV2|DD19A_BOVIN ATP-dependent RNA helicase DDX19A OS=Bos 
taurus OX=9913 GN=DDX19A PE=2 SV=1
Length=478

 Score = 114 bits (285),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 113/437 (26%), Positives = 192/437 (44%), Gaps = 108/437 (25%)

Query  256  VALSKAPDGYIVKSQHSGN--------AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIK  307
            + L++ P   I +SQ SG         A +++ +     P+ L + P+ ELA QT   I+
Sbjct  124  MMLAEPPQNLIAQSQ-SGTGKTAAFVLAMLSRVEPAERYPQCLCLSPTYELALQTGKVIE  182

Query  308  QFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGK-LNLSQVRF  366
            Q  K+  +P+L+    + G        + E+   IV+GTPG + D  S  K ++  +++ 
Sbjct  183  QMGKF--HPELKLAYAVRGNKLERGQKISEH---IVIGTPGTVLDWCSKLKFIDPKKIKV  237

Query  367  LVLDEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF  425
             VLDEAD ++ +QG+ D   R+   +P      +  Q+++ SAT     V K ++K++  
Sbjct  238  FVLDEADVMIATQGHQDQSIRIQRMLP------RNCQMLLFSATFED-SVWKFAQKVVPD  290

Query  426  PTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW  485
            P  + LK E+   DT+    V  N + ++                               
Sbjct  291  PNIIKLKREEETLDTIKQYYVLCNSRDEKF------------------------------  320

Query  486  SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL  545
             +A+  + G   +         QA+IFC T+     L            K+GHQ +   L
Sbjct  321  -QALCNIYGAITIA--------QAMIFCHTRKTASWL-------AAELSKEGHQVAL--L  362

Query  546  HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEK------QNY  599
             G+    +R   +ERF++G  + L+ T+V ARGID+  V  VIN  LP +K      + Y
Sbjct  363  SGEMVVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETY  422

Query  600  VHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLL  659
            +HRIGR GR  + GLA+++V ++                               + M +L
Sbjct  423  LHRIGRTGRFGKRGLAVNMVDSK-------------------------------HSMNIL  451

Query  660  SEIEEHLNCTISQVEPD  676
            + I+EH N  I +++ D
Sbjct  452  NRIQEHFNKKIERLDTD  468


 Score = 39.7 bits (91),  Expect = 0.090, Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 39/64 (61%), Gaps = 2/64 (3%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILG--GGDVLMAAETGSGKTGAFSIPV  60
            +F E+ + P++ Q V  M +  P+ IQ  ++P++L     +++  +++G+GKT AF + +
Sbjct  92   SFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM  151

Query  61   IQIV  64
            +  V
Sbjct  152  LSRV  155


>sp|Q5VRY0|RH39_ORYSJ DEAD-box ATP-dependent RNA helicase 39 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os01g0184500 PE=2 
SV=1
Length=625

 Score = 115 bits (288),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 96/343 (28%), Positives = 158/343 (46%), Gaps = 59/343 (17%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P  P+A+++ P+REL EQ     K    +    + R  ++ GG   R Q   L   VD+V
Sbjct  185  PRRPRAVVLCPTRELTEQVFRVAKSISHHA---RFRSTMVSGGSRIRPQEDSLNMPVDMV  241

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGY----SDFINRMHNQIPQVTSDGK  399
            VGTPGR+ D +  G +    +++LVLDEAD +  QG+      F+  + N+  +    G 
Sbjct  242  VGTPGRILDHIKDGNMVYGDIKYLVLDEADTMFDQGFGPDIRKFLAPLKNRAAKPGDQG-  300

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              Q ++ +AT+ +  V+KL ++   F   V L                   +T    +R+
Sbjct  301  -FQTVLVTATM-TKAVQKLIDE--EFEGIVHL-------------------RTTTFQKRV  337

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
              +  R D +         + S       +++L+   A       K ++ ++FC T ++ 
Sbjct  338  ATA--RHDFIKL-------SGSENKLEALLQVLEPSLA-------KGNKVMVFCNT-LNS  380

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK--KGDVRFLICTDVAAR  577
                 +F+ +        +Q S V  HG+    ER +NL +F+  +GD   L+CTD+AAR
Sbjct  381  SRAVDHFLTE--------NQISTVNYHGEVPAEERVENLNKFRNEEGDCPTLVCTDLAAR  432

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            G+D+  V +VI    P    +Y+HR GR  R    G   SLVA
Sbjct  433  GLDLD-VDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVTSLVA  474


 Score = 55.1 bits (131),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 24/62 (39%), Positives = 41/62 (66%), Gaps = 0/62 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F E+G+  E+  A+ EM    PT+IQ   +P +L G  V++ + TGSGKT A+ +P++Q
Sbjct  111  SFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLVQ  170

Query  63   IV  64
            ++
Sbjct  171  LL  172


>sp|Q4WRV2|DRS1_ASPFU ATP-dependent RNA helicase drs1 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=drs1 PE=3 SV=1
Length=830

 Score = 116 bits (290),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 107/385 (28%), Positives = 169/385 (44%), Gaps = 64/385 (17%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +  I+ P+RELA Q  N   +   + D   +    ++GG + R+Q ++L+   D+++ TP
Sbjct  383  RVAILMPTRELAVQCYNVATKLATHTD---ITFCQLVGGFSLREQENILKKRPDVIIATP  439

Query  348  GR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            GR +D + ++    +  +  LVLDEAD +L  G++D +N +   IP      K  Q ++ 
Sbjct  440  GRFIDHMRNSPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIP------KSRQTMLF  493

Query  407  SATLHSFDVKKLSEKIMHFPT--WVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            SAT+    V KL    ++ P    VD K   S+  T   V             RL     
Sbjct  494  SATMTD-SVDKLIRVGLNRPVRLMVDSKKNTSMNLTQEFV-------------RL-----  534

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                       RPG     +           Y +    E    + I+F R K +   +  
Sbjct  535  -----------RPGREDKRLG----------YLLYLCNEIYTGRVIVFFRQKREAHRVRI  573

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
             F   G              LHG     +R +++E F++G V FL+ TD+A+RG+DI GV
Sbjct  574  VFGLLG---------LKAAELHGSMSQEQRIKSVENFREGKVAFLLATDLASRGLDIKGV  624

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK-VWYHVCSSRGKGC-YNTR  642
              VIN   P   + Y+HR+GR  RA R G A ++ A    K V   V + + +G    +R
Sbjct  625  ETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKIVKSAVKAGKAQGAKIVSR  684

Query  643  LKEDGGCTIWYNEMQ-LLSEIEEHL  666
            + +      W  + + L  EIEE L
Sbjct  685  VVDPAVADEWAAKAKGLEDEIEEVL  709


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 39/60 (65%), Gaps = 0/60 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F +  +   I + +  +++  PT IQ ++IP+ L G D++ +A TGSGKT AF +P+++
Sbjct  311  SFQDFNLSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILE  370


>sp|P10081|IF4A_YEAST ATP-dependent RNA helicase eIF4A OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 
GN=TIF1 PE=1 SV=3
Length=395

 Score = 112 bits (281),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 97/337 (29%), Positives = 155/337 (46%), Gaps = 59/337 (18%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            AP+AL++ P+RELA Q    +     ++D   ++    IGG +  +    L +   IVVG
Sbjct  90   APQALMLAPTRELALQIQKVVMALAFHMD---IKVHACIGGTSFVEDAEGLRDA-QIVVG  145

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGR+ D +   +    +++  +LDEAD +LS G+ + I ++   +P  T      QV++
Sbjct  146  TPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT------QVVL  199

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT+ + DV +++ K M  P  + +K ++   + +    V V  +              
Sbjct  200  LSATMPN-DVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEE--------------  244

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                             E   E +  L    +V         QA+IFC T+   + L   
Sbjct  245  -----------------EYKYECLTDLYDSISVT--------QAVIFCNTRRKVEELTTK  279

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
                      +  +F+   ++ D    ER   ++ F+ G  R LI TD+ ARGID+  V 
Sbjct  280  L---------RNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVS  330

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             VIN  LP  K+NY+HRIGR GR  R G+AI+ V  E
Sbjct  331  LVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNE  367


 Score = 41.2 bits (95),  Expect = 0.027, Method: Compositional matrix adjust.
 Identities = 21/48 (44%), Positives = 31/48 (65%), Gaps = 0/48 (0%)

Query  25  PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQ  72
           P+ IQ  +I  I+ G DVL  A++G+GKTG FSI  +Q +  ++K  Q
Sbjct  45  PSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQ  92


>sp|A6ZQJ1|IF4A_YEAS7 ATP-dependent RNA helicase eIF4A OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=TIF1 PE=3 
SV=1
Length=395

 Score = 112 bits (281),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 97/337 (29%), Positives = 155/337 (46%), Gaps = 59/337 (18%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            AP+AL++ P+RELA Q    +     ++D   ++    IGG +  +    L +   IVVG
Sbjct  90   APQALMLAPTRELALQIQKVVMALAFHMD---IKVHACIGGTSFVEDAEGLRDA-QIVVG  145

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGR+ D +   +    +++  +LDEAD +LS G+ + I ++   +P  T      QV++
Sbjct  146  TPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT------QVVL  199

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT+ + DV +++ K M  P  + +K ++   + +    V V  +              
Sbjct  200  LSATMPN-DVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEE--------------  244

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                             E   E +  L    +V         QA+IFC T+   + L   
Sbjct  245  -----------------EYKYECLTDLYDSISVT--------QAVIFCNTRRKVEELTTK  279

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
                      +  +F+   ++ D    ER   ++ F+ G  R LI TD+ ARGID+  V 
Sbjct  280  L---------RNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVS  330

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             VIN  LP  K+NY+HRIGR GR  R G+AI+ V  E
Sbjct  331  LVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNE  367


 Score = 41.2 bits (95),  Expect = 0.027, Method: Compositional matrix adjust.
 Identities = 21/48 (44%), Positives = 31/48 (65%), Gaps = 0/48 (0%)

Query  25  PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQ  72
           P+ IQ  +I  I+ G DVL  A++G+GKTG FSI  +Q +  ++K  Q
Sbjct  45  PSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQ  92


>sp|A7EML8|RRP3_SCLS1 ATP-dependent rRNA helicase rrp3 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=rrp3 PE=3 SV=1
Length=482

 Score = 114 bits (284),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 93/348 (27%), Positives = 150/348 (43%), Gaps = 59/348 (17%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR  349
            L++ P+RELA Q   + +     I   +++  +I+GG+    Q   L     I+V TPGR
Sbjct  128  LVLAPTRELAYQISQSFEALGSII---RVKCAVIVGGMDMVPQAIALGKKPHIIVATPGR  184

Query  350  L-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSA  408
            L D L +T   +L  +++LV+DEAD LL   +   ++++   +P      +  +  + SA
Sbjct  185  LLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLP------RERRTYLFSA  238

Query  409  TLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDD  468
            T+ S  V+ L    +  P  V +        TV  ++               +++I    
Sbjct  239  TISS-KVESLQRASLKDPLRVSISSNKY--QTVSTLI---------------QNYIFIPL  280

Query  469  VHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQ  528
            VH                      K  Y +  + E     AIIF RT  +   +      
Sbjct  281  VH----------------------KDTYLIYLLNEFAGQSAIIFTRTVNETQRIAILLRT  318

Query  529  QGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVI  588
             G         F  + LHG      R   L +F+ G    L+ TDVAARG+DI  V  V+
Sbjct  319  LG---------FGAIPLHGQLSQSSRLGALNKFRAGSREILVATDVAARGLDIPSVDVVL  369

Query  589  NVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGK  636
            N  +P + + Y+HR+GR  RA + G AIS V     ++W  + ++ GK
Sbjct  370  NYDMPQDSKTYIHRVGRTARAGKSGHAISFVTQYDVEIWMRIEAALGK  417


 Score = 62.4 bits (150),  Expect = 8e-09, Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 43/60 (72%), Gaps = 0/60 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F ++G++  + +A + + +  PT IQ ESIPL L G D++  AETGSGKT AF++P++Q
Sbjct  57   SFKDLGIVDSLCEACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQ  116


>sp|Q5ACK7|DRS1_CANAL ATP-dependent RNA helicase DRS1 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DRS1 
PE=3 SV=1
Length=613

 Score = 115 bits (287),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 96/359 (27%), Positives = 163/359 (45%), Gaps = 58/359 (16%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
             + K +I+ P+RELA Q     K+   +++N  L   L +GG+  R Q   L+   DIV+
Sbjct  198  TSTKVIILTPTRELALQVYEFGKKLSHHVNN--LNIGLAVGGLNLRQQEEQLKTRPDIVI  255

Query  345  GTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
             TPGRL D + ++   ++  ++ LV+DEAD +L +G+ D +  + + IP+      + Q 
Sbjct  256  ATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIPK-----HKRQT  310

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            ++ SAT+++  ++ L +  +  P  + +    SV                    +L +  
Sbjct  311  LLFSATMNT-RIQDLIQLSLQKPVRIMIDPPKSVAS------------------KLLQQF  351

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
            +R   +  +D  +P            ++LKG  +          + ++F   K     L 
Sbjct  352  VR---IRKRDQLKPAL--------LYQLLKGVSS----------RVVVFVARKETAHRLR  390

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
                  G              LHG     +R QN++ FK  +V  LICTD+AARG+DI  
Sbjct  391  IVLGLLG---------LKVSELHGALTQEQRLQNVKNFKSLEVPVLICTDLAARGLDIPK  441

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA-TEKEKVWYHVCSSRGKGCYNT  641
            +  VIN  +P   + Y+HR+GR  RA R G +I+ V  + +E+         GKG   T
Sbjct  442  IELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFVGESSQERAIVKSAIVNGKGVAKT  500


 Score = 55.8 bits (133),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 40/61 (66%), Gaps = 0/61 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +F  + +   + + + E+ +  PT IQ+ SIP+ L G D++  A+TGSGKTGA+ IP+I
Sbjct  130  TSFQTLQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPII  189

Query  62   Q  62
            +
Sbjct  190  E  190


>sp|Q5R7D1|DDX42_PONAB ATP-dependent RNA helicase DDX42 OS=Pongo 
abelii OX=9601 GN=DDX42 PE=2 SV=1
Length=942

 Score = 115 bits (289),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 96/335 (29%), Positives = 147/335 (44%), Gaps = 57/335 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P A+IV P+REL +Q     K+F K  +   LR + + GG +  +Q   L+ G +IVV
Sbjct  325  DGPIAVIVCPTRELCQQIHAEGKRFGKAYN---LRSVAVYGGGSMWEQAKALQEGAEIVV  381

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D V     NL +V +LV DEAD +   G+   +  + +    V  D    Q +
Sbjct  382  CTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASH---VRPD---RQTL  435

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT     ++KL+  I+  P  V           V   +   N    ++ E L     
Sbjct  436  LFSATFRK-KIEKLARDILIDPIRV-----------VQGDIGEANEDVTQIVEIL-----  478

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                           + P  W+   +        R ++       ++F   K + + L  
Sbjct  479  --------------HSGPSKWNWLTR--------RLVEFTSSGSVLLFVTKKANAEELAN  516

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
               Q+G          +   LHGD    ER + +  FKK D+  L+ TDVAARG+DI  +
Sbjct  517  NLKQEG---------HNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSI  567

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
              VIN  +  +   + HRIGR GRA   G+A +L+
Sbjct  568  KTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL  602


 Score = 47.0 bits (110),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 37/60 (62%), Gaps = 0/60 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            ++F+  G   ++   + + ++  PT IQ + +P+ L G D++  A+TGSGKT AF  P++
Sbjct  253  SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML  312


>sp|Q3BNH8|RHLB_XANC5 ATP-dependent RNA helicase RhlB OS=Xanthomonas 
campestris pv. vesicatoria (strain 85-10) OX=316273 GN=rhlB 
PE=3 SV=1
Length=573

 Score = 114 bits (286),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 155/336 (46%), Gaps = 58/336 (17%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P  P+ALI+ P+RELA Q   +  +F   +    LR  L+ GGV    Q  +L+ GVD++
Sbjct  82   PEDPRALILAPTRELAIQIHKDAVKFGADLG---LRFALVYGGVDYDKQRELLQQGVDVI  138

Query  344  VGTPGRLDDLVSTGKL-NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            + TPGRL D V   K+ +L      VLDEAD +   G+   I  +  ++P+    G R Q
Sbjct  139  IATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPE---RGTR-Q  194

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
             ++ SATL S  V +L+ + M+ P  + ++ E                   R+ +R+   
Sbjct  195  TLLFSATL-SHRVLELAYEHMNEPEKLVVETESIT--------------AARVRQRI---  236

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
            +  +D+              E  +  + +L      R +         +F  TK   + +
Sbjct  237  YFPSDE--------------EKQTLLLGLLSRSEGARTM---------VFVNTKAFVERV  273

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
             +           + H +    L GD    +R+  L RF+KG +  L+ TDVAARG+ I 
Sbjct  274  ARTL---------ERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHID  324

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            GV YV N  LP + ++YVHRIGR  R    G AIS 
Sbjct  325  GVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF  360


 Score = 43.5 bits (101),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (3%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ-  62
           FS   + P +   +E   +   T IQA ++P+ L GGDV   A+TG+GKT AF + V+  
Sbjct  11  FSSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNR  70

Query  63  -IVYETLKDQQ  72
            ++   L D++
Sbjct  71  LLIRPALADRK  81


>sp|Q86TM3|DDX53_HUMAN Probable ATP-dependent RNA helicase DDX53 
OS=Homo sapiens OX=9606 GN=DDX53 PE=1 SV=3
Length=631

 Score = 115 bits (287),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 153/348 (44%), Gaps = 70/348 (20%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P  L++ P+RELA   L+   +  KY     L+ + I GG     Q+  +  GVDI++
Sbjct  295  NGPGMLVLTPTRELA---LHVEAECSKY-SYKGLKSICIYGGRNRNGQIEDISKGVDIII  350

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL+DL     +NL  + +LV+DEAD +L   +   I ++                 
Sbjct  351  ATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKIL----------------  394

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
                     DV+   + +M   TW         PDTV  + +      D +   +G  ++
Sbjct  395  --------LDVRPDRQTVMTSATW---------PDTVRQLALSY--LKDPMIVYVGNLNL  435

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM------DQAIIFCRTKID  518
               +   K N                I+  E   RA+ +  +      D+ I+F   K  
Sbjct  436  VAVNT-VKQNI---------------IVTTEKEKRALTQEFVENMSPNDKVIMFVSQKHI  479

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
             D+L   F  QG          S   LHG+ +  ++++ +E FK G+++ LI TD+ +RG
Sbjct  480  ADDLSSDFNIQG---------ISAESLHGNSEQSDQERAVEDFKSGNIKILITTDIVSRG  530

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
            +D++ V +V N   P     YVHR+G +GR  + G +++L+     K+
Sbjct  531  LDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDSKM  578


 Score = 42.7 bits (99),  Expect = 0.012, Method: Compositional matrix adjust.
 Identities = 17/49 (35%), Positives = 36/49 (73%), Gaps = 0/49 (0%)

Query  11   PEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
            P++ +++  +  + PT IQ+++ P+IL G D+++ A+TG+GKT ++ +P
Sbjct  231  PDLLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMP  279


>sp|Q8PFZ3|RHLB_XANAC ATP-dependent RNA helicase RhlB OS=Xanthomonas 
axonopodis pv. citri (strain 306) OX=190486 GN=rhlB PE=3 
SV=1
Length=571

 Score = 114 bits (286),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 155/336 (46%), Gaps = 58/336 (17%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P  P+ALI+ P+RELA Q   +  +F   +    LR  L+ GGV    Q  +L+ GVD++
Sbjct  82   PEDPRALILAPTRELAIQIHKDAVKFGADLG---LRFALVYGGVDYDKQRELLQQGVDVI  138

Query  344  VGTPGRLDDLVSTGKL-NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            + TPGRL D V   K+ +L      VLDEAD +   G+   I  +  ++P+    G R Q
Sbjct  139  IATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPE---RGTR-Q  194

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
             ++ SATL S  V +L+ + M+ P  + ++ E                   R+ +R+   
Sbjct  195  TLLFSATL-SHRVLELAYEHMNEPEKLVVETESIT--------------AARVRQRI---  236

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
            +  +D+              E  +  + +L      R +         +F  TK   + +
Sbjct  237  YFPSDE--------------EKQTLLLGLLSRSEGARTM---------VFVNTKAFVERV  273

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
             +           + H +    L GD    +R+  L RF+KG +  L+ TDVAARG+ I 
Sbjct  274  ARTL---------ERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHID  324

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            GV YV N  LP + ++YVHRIGR  R    G AIS 
Sbjct  325  GVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF  360


 Score = 43.5 bits (101),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (3%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ-  62
           FS   + P +   +E   +   T IQA ++P+ L GGDV   A+TG+GKT AF + V+  
Sbjct  11  FSSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNR  70

Query  63  -IVYETLKDQQ  72
            ++   L D++
Sbjct  71  LLIRPALADRK  81


>sp|A6R603|SUB2_AJECN ATP-dependent RNA helicase SUB2 OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=SUB2 PE=3 
SV=2
Length=442

 Score = 113 bits (282),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 98/350 (28%), Positives = 160/350 (46%), Gaps = 59/350 (17%)

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            Q + +P     L++  +RELA Q  N   +F KY+  P ++  +  GG   +  + +L +
Sbjct  120  QLEPVPGECSILVMCHTRELAYQIKNEYARFSKYL--PDVKTAVFYGGTPMQKDIELLSS  177

Query  339  G---VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
                  IVVGTPGRL+ LV   KL+L  ++  VLDE D +L Q     + R   +I + T
Sbjct  178  KDTYPSIVVGTPGRLNALVRDKKLSLRNIKAFVLDECDKMLDQID---MRRDVQEIFRAT  234

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL  455
               K  QV++ SATL S +V+ + +K M  P  V +  +D    T+H ++        + 
Sbjct  235  PADK--QVMMFSATL-SQEVRPICKKFMRNPLEVYV--DDDTKLTLHGLL--------QY  281

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRT  515
            + +LG+S                              K       +   + +Q IIF ++
Sbjct  282  YIKLGESE-----------------------------KNRKLNELLDSLEFNQVIIFVKS  312

Query  516  KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA  575
                  L++           +   F  + +H      ER +  + FK+ + R  + TDV 
Sbjct  313  TQRASELDKLL---------RECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVF  363

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
             RGIDI  +   IN  LP +  +Y+HR+GR GR    GLAIS V++E+++
Sbjct  364  GRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLAISFVSSEQDQ  413


>sp|A1CR32|RRP3_ASPCL ATP-dependent rRNA helicase rrp3 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / 
NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=rrp3 PE=3 SV=1
Length=473

 Score = 113 bits (283),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 101/364 (28%), Positives = 156/364 (43%), Gaps = 59/364 (16%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P +   L++ P+RELA Q   + +     I+   +R  +I+GG+    Q   L     I+
Sbjct  119  PQSFFGLVLAPTRELAFQISQSFEALGSTIN---VRCAVIVGGMDMVSQSIALGKKPHII  175

Query  344  VGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            V TPGRL D L +T   +L  +++LV+DEAD LL   +   ++++   +P      +  +
Sbjct  176  VATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKILP------RERR  229

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
              + SAT+ S  V+ L    +  P  V      SV    +  V             L +S
Sbjct  230  TFLFSATMSS-KVESLQRASLSNPLRV------SVSSNKYQTV-----------STLLQS  271

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
            +      H                      K  Y V  + E     AIIF RT  +   +
Sbjct  272  YRFIPHKH----------------------KDIYLVYLLNEFVGQSAIIFTRTVHETQRI  309

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
               F+ +  G       F  + LHG      R   L +F+      L+ TDVAARG+DI 
Sbjct  310  S--FLLRALG-------FGAIPLHGQLSQSSRLGALGKFRSRSRDILVATDVAARGLDIP  360

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTR  642
             V  V+N  LP + + YVHR+GR  RA + G+AIS V     ++W  +  + GK      
Sbjct  361  SVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWLRIEGALGKKLDEYD  420

Query  643  LKED  646
            L++D
Sbjct  421  LEKD  424


 Score = 63.5 bits (153),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 28/64 (44%), Positives = 45/64 (70%), Gaps = 0/64 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F ++G++ ++ +A   M +  PT IQAESIPL L   D++  AETGSGKT AF++P++Q
Sbjct  54   SFKDLGIIDQLCEACATMGYKAPTPIQAESIPLALQDRDLIGLAETGSGKTAAFALPILQ  113

Query  63   IVYE  66
             + +
Sbjct  114  ALMD  117


>sp|A5DQF1|RRP3_PICGU ATP-dependent rRNA helicase RRP3 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=RRP3 PE=3 
SV=2
Length=475

 Score = 113 bits (283),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 154/349 (44%), Gaps = 62/349 (18%)

Query  289  ALIVEPSRELAEQTLNNIKQ-FKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            AL++ P+RELA Q    IK+ F        +R + I+GG+   DQ   L     I+V TP
Sbjct  135  ALVLAPTRELAYQ----IKETFDALGSGMGVRSVCIVGGMDMMDQARDLMRKPHILVATP  190

Query  348  GR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            GR +D L +T   +L  +++LV+DEAD LL   +   ++++   IP       +    + 
Sbjct  191  GRIMDHLENTKGFSLKSLQYLVMDEADRLLDMDFGPALDKILKVIPT------KRTTYLF  244

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT+ +  + KL    +H P  V +  +    D                   L +S +  
Sbjct  245  SATMTN-KIAKLQRASLHEPVKVAVSNKYQTADN------------------LVQSMMLV  285

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
             D +                      K  + +  + E      I+F RT   C + ++  
Sbjct  286  SDGY----------------------KNTFLIHLLNEFMGKSIIVFTRT---CAHTQRST  320

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
            +        +   FS V LHG     +R  +L +FK G    LI TDVAARG+DI  V  
Sbjct  321  LLA------RILGFSAVPLHGQLTQSQRLGSLNKFKSGKANILIATDVAARGLDIPSVDV  374

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRG  635
            VIN  +P + + Y+HR+GR  RA + G +ISLV     +++  + S  G
Sbjct  375  VINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYDLEMYLRIESVLG  423


 Score = 69.3 bits (168),  Expect = 6e-11, Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 48/63 (76%), Gaps = 0/63 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FSE+ ++PE+ +A+E++ +  PT IQ+ +IP  L G D++  A+TGSGKT AF+IP++Q 
Sbjct  66   FSELNLVPELMEAIEKLKYTKPTPIQSGAIPHALEGKDIIGLAQTGSGKTAAFAIPILQS  125

Query  64   VYE  66
            ++E
Sbjct  126  LWE  128


>sp|Q8P4D4|RHLB_XANCP ATP-dependent RNA helicase RhlB OS=Xanthomonas 
campestris pv. campestris (strain ATCC 33913 / DSM 3586 
/ NCPPB 528 / LMG 568 / P 25) OX=190485 GN=rhlB PE=3 SV=1
Length=573

 Score = 114 bits (285),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 103/336 (31%), Positives = 152/336 (45%), Gaps = 58/336 (17%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P  P+ALI+ P+RELA Q   +  +F   +    LR  L+ GGV    Q  +L+ GVD++
Sbjct  82   PEDPRALILAPTRELAIQIHKDAVKFGADLG---LRFALVYGGVDYDKQRELLQQGVDVI  138

Query  344  VGTPGRLDDLVSTGKL-NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            + TPGRL D V   K+ +L      VLDEAD +   G+   I  +  ++P+    G R Q
Sbjct  139  IATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPE---RGTR-Q  194

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
             ++ SATL S  V +L+ + M+ P       E  V +T                E +  +
Sbjct  195  TLLFSATL-SHRVLELAYEHMNEP-------EKLVVET----------------ETITAA  230

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
             +R       D         E  +  + +L      R +         +F  TK   + +
Sbjct  231  RVRQRIYFPSDE--------EKQTLLLGLLSRSEGARTM---------VFVNTKAFVERV  273

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
             +           + H +    L GD    +R+  L RF+KG +  L+ TDVAARG+ I 
Sbjct  274  ARTL---------ERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHID  324

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            GV YV N  LP + ++YVHRIGR  R    G AIS 
Sbjct  325  GVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF  360


 Score = 43.5 bits (101),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (3%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ-  62
           FS   + P +   +E   +   T IQA ++P+ L GGDV   A+TG+GKT AF + V+  
Sbjct  11  FSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNR  70

Query  63  -IVYETLKDQQ  72
            ++   L D++
Sbjct  71  LLIRPALADRK  81


>sp|B0RWT6|RHLB_XANCB ATP-dependent RNA helicase RhlB OS=Xanthomonas 
campestris pv. campestris (strain B100) OX=509169 GN=rhlB 
PE=3 SV=1
Length=573

 Score = 114 bits (285),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 103/336 (31%), Positives = 152/336 (45%), Gaps = 58/336 (17%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P  P+ALI+ P+RELA Q   +  +F   +    LR  L+ GGV    Q  +L+ GVD++
Sbjct  82   PEDPRALILAPTRELAIQIHKDAVKFGADLG---LRFALVYGGVDYDKQRELLQQGVDVI  138

Query  344  VGTPGRLDDLVSTGKL-NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            + TPGRL D V   K+ +L      VLDEAD +   G+   I  +  ++P+    G R Q
Sbjct  139  IATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPE---RGTR-Q  194

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
             ++ SATL S  V +L+ + M+ P       E  V +T                E +  +
Sbjct  195  TLLFSATL-SHRVLELAYEHMNEP-------EKLVVET----------------ETITAA  230

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
             +R       D         E  +  + +L      R +         +F  TK   + +
Sbjct  231  RVRQRIYFPSDE--------EKQTLLLGLLSRSEGARTM---------VFVNTKAFVERV  273

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
             +           + H +    L GD    +R+  L RF+KG +  L+ TDVAARG+ I 
Sbjct  274  ARTL---------ERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHID  324

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            GV YV N  LP + ++YVHRIGR  R    G AIS 
Sbjct  325  GVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF  360


 Score = 43.5 bits (101),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (3%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ-  62
           FS   + P +   +E   +   T IQA ++P+ L GGDV   A+TG+GKT AF + V+  
Sbjct  11  FSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNR  70

Query  63  -IVYETLKDQQ  72
            ++   L D++
Sbjct  71  LLIRPALADRK  81


>sp|Q4UPY5|RHLB_XANC8 ATP-dependent RNA helicase RhlB OS=Xanthomonas 
campestris pv. campestris (strain 8004) OX=314565 GN=rhlB 
PE=3 SV=1
Length=573

 Score = 114 bits (285),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 103/336 (31%), Positives = 152/336 (45%), Gaps = 58/336 (17%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P  P+ALI+ P+RELA Q   +  +F   +    LR  L+ GGV    Q  +L+ GVD++
Sbjct  82   PEDPRALILAPTRELAIQIHKDAVKFGADLG---LRFALVYGGVDYDKQRELLQQGVDVI  138

Query  344  VGTPGRLDDLVSTGKL-NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            + TPGRL D V   K+ +L      VLDEAD +   G+   I  +  ++P+    G R Q
Sbjct  139  IATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPE---RGTR-Q  194

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
             ++ SATL S  V +L+ + M+ P       E  V +T                E +  +
Sbjct  195  TLLFSATL-SHRVLELAYEHMNEP-------EKLVVET----------------ETITAA  230

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
             +R       D         E  +  + +L      R +         +F  TK   + +
Sbjct  231  RVRQRIYFPSDE--------EKQTLLLGLLSRSEGARTM---------VFVNTKAFVERV  273

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
             +           + H +    L GD    +R+  L RF+KG +  L+ TDVAARG+ I 
Sbjct  274  ARTL---------ERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHID  324

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            GV YV N  LP + ++YVHRIGR  R    G AIS 
Sbjct  325  GVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF  360


 Score = 43.5 bits (101),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (3%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ-  62
           FS   + P +   +E   +   T IQA ++P+ L GGDV   A+TG+GKT AF + V+  
Sbjct  11  FSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNR  70

Query  63  -IVYETLKDQQ  72
            ++   L D++
Sbjct  71  LLIRPALADRK  81


>sp|Q7RY59|RRP3_NEUCR ATP-dependent rRNA helicase rrp-3 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 
/ DSM 1257 / FGSC 987) OX=367110 GN=rrp-3 PE=3 SV=1
Length=515

 Score = 114 bits (284),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 102/359 (28%), Positives = 151/359 (42%), Gaps = 59/359 (16%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            AL++ P+RELA Q     +     I    LR  LI+GG+    Q   L     ++V TPG
Sbjct  161  ALVLAPTRELAAQIAQAFEALGSLIS---LRCALILGGMDMVTQAIALGKKPHVIVATPG  217

Query  349  RL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            RL D L  T   +L  +++LV+DEAD LL   +   + ++   +P      +  +  + S
Sbjct  218  RLLDHLEKTKGFSLRSMQYLVMDEADRLLDMDFGPILEKILKFLP------RERRTFLFS  271

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+ S  V+ L    +  P  V      SV    +  V                S ++++
Sbjct  272  ATMSS-KVESLQRASLRDPLKV------SVSSNKYATV----------------STLKSN  308

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
             V            P M        K  Y V    E      IIF RT ++   +     
Sbjct  309  YVFI----------PHMH-------KDTYLVYLCNEFAGQTIIIFTRTVLETQRIAILLR  351

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
              G G          + LHG      R   L +F+ G    L+ TDVAARG+DI  V  V
Sbjct  352  TLGMG---------AIPLHGGLSQSARLGALNKFRAGSREILVATDVAARGLDIPNVDCV  402

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKED  646
            IN  LP + + YVHR+GR  RA + G AIS+V     ++W  + ++ G       L++D
Sbjct  403  INHDLPQDSKTYVHRVGRTARAGKSGHAISIVTQYDLEIWLRIEAALGHKLDEYPLEKD  461


 Score = 59.7 bits (143),  Expect = 6e-08, Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 43/63 (68%), Gaps = 0/63 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F ++G++  + +A E + +  PT IQ +SIPL L   D++  AETGSGKT AF++P++Q 
Sbjct  92   FKDLGIVDALCEACERLGYKNPTPIQEQSIPLALQNRDIIGIAETGSGKTAAFALPILQA  151

Query  64   VYE  66
            + +
Sbjct  152  LLD  154


>sp|Q921N6|DDX27_MOUSE Probable ATP-dependent RNA helicase DDX27 
OS=Mus musculus OX=10090 GN=Ddx27 PE=1 SV=3
Length=760

 Score = 115 bits (287),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 155/347 (45%), Gaps = 57/347 (16%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + L++ P+REL  Q  +  KQ  ++     +   L +GG+  + Q + L    DI++ TP
Sbjct  257  RVLVLVPTRELGIQVHSVTKQLAQFCS---ITTCLAVGGLDVKSQEAALRAAPDILIATP  313

Query  348  GRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            GRL D L +    +LS +  L+LDEAD +L +    +      +I ++ S  +  Q ++ 
Sbjct  314  GRLIDHLHNCPSFHLSSIEVLILDEADRMLDE----YFEEQMKEIIRMCSHHR--QTMLF  367

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT+   +VK L+   +  P  + +     V   +    + + P              R 
Sbjct  368  SATMTD-EVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPN-------------RE  413

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
             D  A                    +     +R   +H M    +F +TK     +    
Sbjct  414  GDREA--------------------IVAALLMRTFTDHVM----LFTQTKKQAHRM---H  446

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
            I  G    + G       LHG+    +R + L RFK   +  L+ TDVAARG+DI GV  
Sbjct  447  ILLGLLGLQVGE------LHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKT  500

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
            VIN T+P+  ++YVHR+GR  RA R G ++SLV  E+ K+   +  +
Sbjct  501  VINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKA  547


 Score = 49.7 bits (117),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 24/64 (38%), Positives = 40/64 (63%), Gaps = 1/64 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F +M +   + +A+  M +  PT IQ   IP+ L G D+   A TG+GKT AF++PV++
Sbjct  185  SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE  244

Query  63   -IVY  65
             ++Y
Sbjct  245  RLIY  248


>sp|Q0CGJ9|SUB2_ASPTN ATP-dependent RNA helicase sub2 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=sub2 
PE=3 SV=1
Length=438

 Score = 112 bits (281),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 102/353 (29%), Positives = 160/353 (45%), Gaps = 60/353 (17%)

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            Q + +P     L++  +RELA Q  N   +F KY+  P ++  +  GG   +  + VL N
Sbjct  116  QLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYL--PDVKTAVFYGGTPIQKDIEVLSN  173

Query  339  G---VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
                 +IVVGTPGRL+ LV   KL+L  V+  VLDE D +L Q     + R   +I + T
Sbjct  174  KESYPNIVVGTPGRLNALVREKKLSLRNVKAFVLDECDKMLDQID---MRRDVQEIFRAT  230

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL  455
               K  QV++ SATL S +++ + +K M  P  V +  +D    T+H +         + 
Sbjct  231  PADK--QVMMFSATL-SQEIRPICKKFMRNPLEVYV--DDDTKLTLHGL--------QQY  277

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRT  515
            + +L +S          DN                              + +Q IIF ++
Sbjct  278  YIKLSESEKNRKLNDLLDNL-----------------------------EFNQVIIFVKS  308

Query  516  KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA  575
                + L++           +   F  + +H      ER +  + FK+ + R  + TDV 
Sbjct  309  TQRANELDKLL---------RECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVF  359

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE-KEKVW  627
             RGIDI  +   IN  LP +  +Y+HR+GR GR    GL+IS V++E  EKV 
Sbjct  360  GRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSSEDDEKVL  412


>sp|A1A4H6|DDX27_BOVIN Probable ATP-dependent RNA helicase DDX27 
OS=Bos taurus OX=9913 GN=DDX27 PE=2 SV=1
Length=765

 Score = 115 bits (287),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 93/347 (27%), Positives = 154/347 (44%), Gaps = 57/347 (16%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + L++ P+REL  Q  +  KQ  ++     +   L +GG+  + Q + L    DI++ TP
Sbjct  260  RVLVLVPTRELGIQVHSVTKQLAQFCS---ITTCLAVGGLDVKSQEAALRAAPDILIATP  316

Query  348  GRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            GRL D L +    +LS +  L+LDEAD +L + + + +     +I ++ S  +  Q ++ 
Sbjct  317  GRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMK----EIIRMCSHHR--QTMLF  370

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT+   +VK L+   +  P  + +     V   +    + + P              R 
Sbjct  371  SATMTD-EVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPN-------------RE  416

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
             D  A                    +     +R   +H M    +F +TK     +    
Sbjct  417  GDREA--------------------IVAALLMRTFTDHVM----LFTQTKKQAHRMHILL  452

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
               G              LHG+    +R + L RFK   +  L+ TDVAARG+DI GV  
Sbjct  453  GLMG---------LQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKT  503

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
            VIN T+P+  ++YVHR+GR  RA R G ++SLV  E+ K+   +  +
Sbjct  504  VINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKA  550


 Score = 49.7 bits (117),  Expect = 9e-05, Method: Compositional matrix adjust.
 Identities = 24/65 (37%), Positives = 41/65 (63%), Gaps = 1/65 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F +M +   + +A+  M +  PT IQ   IP+ L G D+   A TG+GKT AF++PV++
Sbjct  188  SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE  247

Query  63   -IVYE  66
             ++Y+
Sbjct  248  RLIYK  252


>sp|P0CQ86|DBP5_CRYNJ ATP-dependent RNA helicase DBP5 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=DBP5 PE=3 SV=1
Length=546

 Score = 114 bits (284),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 157/341 (46%), Gaps = 73/341 (21%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+A+ + PSRELA Q    I Q  ++    ++   L I G  +R+  S ++    I++GT
Sbjct  219  PQAICIAPSRELARQIQEVIDQIGQFT---QVGTFLAIPGSWSRN--SRIDK--QILIGT  271

Query  347  PGRLDDLVSTGK--LNLSQVRFLVLDEADGLLSQ-GYSDFINRMHNQIPQVTSDGKRLQV  403
            PG L D++  G   L+   +R LVLDEAD L++Q G  +   R+   +P        +Q 
Sbjct  272  PGTLVDMLMRGSRILDPRMIRVLVLDEADELIAQQGLGEQTFRIKQLLP------PNVQN  325

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            ++ SAT +  DV++ +++       + L+ ED   D +  + +                 
Sbjct  326  VLFSATFND-DVQEFADRFAPEANKIFLRKEDITVDAIRQLYLE----------------  368

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                            +S +   EA+  L   Y    I      Q+I+FC+ K+  D++ 
Sbjct  369  ---------------CDSEDQKYEALSAL---YDCLVIG-----QSIVFCKRKVTADHIA  405

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
            +  I +G          +   LHGD+   ER   L+ F+ G+ + LI T+V ARGIDI  
Sbjct  406  ERLISEG---------HAVASLHGDKLSQERDAILDGFRNGETKVLITTNVIARGIDIPA  456

Query  584  VPYVINVTLPD--------EKQNYVHRIGRVGRAERMGLAI  616
            V  V+N  +PD        + + Y+HRIGR GR  R G ++
Sbjct  457  VNMVVNYDVPDLGPGGNGPDIETYIHRIGRTGRFGRKGCSV  497


 Score = 33.5 bits (75),  Expect = 8.8, Method: Compositional matrix adjust.
 Identities = 17/72 (24%), Positives = 42/72 (58%), Gaps = 2/72 (3%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGG--DVLMAAETGSGKTGAFSIPV  60
            +F E+ +  ++ + +    +  P+ IQ +++PL+L     +++  +++G+GKT AF++ +
Sbjct  149  SFKELNLHEDLMKGIIAAGFQKPSKIQEKALPLLLSNPPRNLIGQSQSGTGKTAAFTLNM  208

Query  61   IQIVYETLKDQQ  72
            +  V  T+   Q
Sbjct  209  LSRVDPTIPTPQ  220


>sp|Q5ASK8|SUB2_EMENI ATP-dependent RNA helicase sub2 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=sub2 PE=3 SV=2
Length=434

 Score = 112 bits (280),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 106/353 (30%), Positives = 163/353 (46%), Gaps = 68/353 (19%)

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            Q + +P     L++  +RELA Q  N   +F KY+  P ++  +  GG   +  + VL N
Sbjct  120  QLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYL--PDVKTAVFYGGTPIQKDIEVLSN  177

Query  339  G---VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
                 +I+VGTPGRL+ LV   KL+L  V+  VLDE D +L Q     + R   +I + T
Sbjct  178  KDTFPNIIVGTPGRLNALVRDKKLSLRNVKAFVLDECDKMLDQID---MRRDVQEIFRAT  234

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL  455
               K  QV++ SATL S DV+ + +K M  P  V +  +D    T+H             
Sbjct  235  PTDK--QVMMFSATL-SQDVRPICKKFMRNPLEVYV--DDDTKLTLHG------------  277

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRT  515
               L + +I+                    SEA K  K    + ++   + +Q IIF ++
Sbjct  278  ---LQQYYIK-------------------LSEAEKNRKLNELLDSL---EFNQVIIFVKS  312

Query  516  KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA  575
             I  + L++           +   F  + +H  R         + FK+ + R  + TDV 
Sbjct  313  TIRANELDKLL---------RECNFPSIAVHSGR--------YKEFKEFNKRICVATDVF  355

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT-EKEKVW  627
             RGIDI  +   IN  LP +  +Y+HR+GR GR    GL+IS V+T E E+V 
Sbjct  356  GRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSTPEDEQVL  408


>sp|P0CQ82|DBP4_CRYNJ ATP-dependent RNA helicase DBP4 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=DBP4 PE=3 SV=1
Length=859

 Score = 115 bits (287),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 163/346 (47%), Gaps = 60/346 (17%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            A+++ P+RELA QT   ++   KY +       L+IGG   +++   L   ++I++ TPG
Sbjct  135  AVVISPTRELAVQTFMQLRDIGKYHN---FSAGLVIGGKPLKEEQERL-GRMNILIATPG  190

Query  349  RL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQI-PQVTSDGKR--LQVI  404
            RL   L ST   + S V+ LVLDEAD LL  G+   +  + +   P  T+ G R   Q +
Sbjct  191  RLLQHLDSTVGFDSSAVKVLVLDEADRLLDLGFLPALKAIVSHFSPVQTAPGSRPSRQTL  250

Query  405  VCSATLHSFDVKKLSEKIMHFPTWV--DLKGEDSV-PDTV--HHVVVPVNPKTDRLWERL  459
            + SAT  S D+  L++  ++ P ++  +  GE+ V P  +  ++ VVP+  K D LW  +
Sbjct  251  LFSAT-QSKDLAALAKLSLYEPLYISCNKPGEEGVMPANLEQYYAVVPLERKLDALWGFV  309

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
             KSH++   +                   + +  G+ A R           IF       
Sbjct  310  -KSHLKMKGI-------------------VFVTSGKQARRV--------RFIF-------  334

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
               E +     G P         + LHG +K   R    +RF       LICTDVAARG+
Sbjct  335  ---ETFRRLHPGLP--------LMHLHGKQKQPTRLDIFQRFSSSKSALLICTDVAARGL  383

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            D   V +VI +  PD+   Y+HR+GR  R +  G A++++   +E+
Sbjct  384  DFPAVDWVIQLDCPDDVDTYIHRVGRTARYQSAGTALTILCPSEEE  429


 Score = 50.1 bits (118),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 0/62 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FSE+ +  +  + ++   +L PT IQ+ +IP  L   D+L +A+TGSGKT AF IP+++ 
Sbjct  62   FSELPMSSKTQKGLKSSHFLNPTPIQSLAIPPALQARDILGSAKTGSGKTLAFLIPLLER  121

Query  64   VY  65
            +Y
Sbjct  122  LY  123


>sp|P0CQ83|DBP4_CRYNB ATP-dependent RNA helicase DBP4 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=DBP4 PE=3 SV=1
Length=859

 Score = 115 bits (287),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 163/346 (47%), Gaps = 60/346 (17%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            A+++ P+RELA QT   ++   KY +       L+IGG   +++   L   ++I++ TPG
Sbjct  135  AVVISPTRELAVQTFMQLRDIGKYHN---FSAGLVIGGKPLKEEQERL-GRMNILIATPG  190

Query  349  RL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQI-PQVTSDGKR--LQVI  404
            RL   L ST   + S V+ LVLDEAD LL  G+   +  + +   P  T+ G R   Q +
Sbjct  191  RLLQHLDSTVGFDSSAVKVLVLDEADRLLDLGFLPALKAIVSHFSPVQTAPGSRPSRQTL  250

Query  405  VCSATLHSFDVKKLSEKIMHFPTWV--DLKGEDSV-PDTV--HHVVVPVNPKTDRLWERL  459
            + SAT  S D+  L++  ++ P ++  +  GE+ V P  +  ++ VVP+  K D LW  +
Sbjct  251  LFSAT-QSKDLAALAKLSLYEPLYISCNKPGEEGVMPANLEQYYAVVPLERKLDALWGFV  309

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
             KSH++   +                   + +  G+ A R           IF       
Sbjct  310  -KSHLKMKGI-------------------VFVTSGKQARRV--------RFIF-------  334

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
               E +     G P         + LHG +K   R    +RF       LICTDVAARG+
Sbjct  335  ---ETFRRLHPGLP--------LMHLHGKQKQPTRLDIFQRFSSSKSALLICTDVAARGL  383

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            D   V +VI +  PD+   Y+HR+GR  R +  G A++++   +E+
Sbjct  384  DFPAVDWVIQLDCPDDVDTYIHRVGRTARYQSAGTALTILCPSEEE  429


 Score = 50.1 bits (118),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 0/62 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FSE+ +  +  + ++   +L PT IQ+ +IP  L   D+L +A+TGSGKT AF IP+++ 
Sbjct  62   FSELPMSSKTQKGLKSSHFLNPTPIQSLAIPPALQARDILGSAKTGSGKTLAFLIPLLER  121

Query  64   VY  65
            +Y
Sbjct  122  LY  123


>sp|Q9FLB0|RH18_ARATH DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis 
thaliana OX=3702 GN=RH18 PE=2 SV=1
Length=593

 Score = 114 bits (284),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 165/370 (45%), Gaps = 46/370 (12%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN-GVDI  342
            P+    +I+ P+REL+ Q  N  + F   + N  +  +L++GG   +  + ++E  G ++
Sbjct  88   PHQVMGVIISPTRELSTQIYNVAQPFVSTLAN--VNSVLLVGGREVKADMKIIEEEGCNV  145

Query  343  VVGTPGRLDDLVSTGK-LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL  401
            ++GTPGRL D++   + L+   +  L+LDEAD LL  G+   +N + +++P+    G   
Sbjct  146  LIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRRTG---  202

Query  402  QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK  461
               + SAT  +  V++L++  +  P  V+++                            K
Sbjct  203  ---LFSAT-QTEGVEELAKAGLRNPVRVEVRA---------------------------K  231

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
            S   +        T  G +   M  EA K  K    V  + ++   + I+F  T   C +
Sbjct  232  SKSESSQQLTNSKTPSGLHLEYMECEADK--KSSQLVDLLIKNSDKKLIVFFMT---CAS  286

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            ++ + +     P  K    S + +HGD K + R + L  F K     L+CTDVAARG+DI
Sbjct  287  VDYWGLVLSKIPALKS--ISLIPIHGDMKQNARDKALASFTKASSGALLCTDVAARGLDI  344

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
             G+ YV+    P +   + HR GR  R  R G AI  +   KE+ +      R       
Sbjct  345  PGIDYVVQYDPPQDPNMFNHRAGRTARLGRQGRAIVFLLP-KEEAYVEFMRIRRVPLEER  403

Query  642  RLKEDGGCTI  651
            +  ED    I
Sbjct  404  KCSEDASDVI  413


 Score = 47.4 bits (111),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 22/53 (42%), Positives = 36/53 (68%), Gaps = 0/53 (0%)

Query  12  EIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIV  64
           +I +A+ + D+   T +QA +IPL+    DV + A TGSGKT AF +P+++I+
Sbjct  26  DIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEIL  78


>sp|Q9NUU7|DD19A_HUMAN ATP-dependent RNA helicase DDX19A OS=Homo 
sapiens OX=9606 GN=DDX19A PE=1 SV=1
Length=478

 Score = 112 bits (281),  Expect = 6e-25, Method: Compositional matrix adjust.
 Identities = 113/437 (26%), Positives = 190/437 (43%), Gaps = 108/437 (25%)

Query  256  VALSKAPDGYIVKSQHSGN--------AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIK  307
            + L++ P   I +SQ SG         A +++ +     P+ L + P+ ELA QT   I+
Sbjct  124  MMLAEPPQNLIAQSQ-SGTGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELALQTGKVIE  182

Query  308  QFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGK-LNLSQVRF  366
            Q  K+   P+L+    + G        + E    IV+GTPG + D  S  K ++  +++ 
Sbjct  183  QMGKFY--PELKLAYAVRGNKLERGQKISEQ---IVIGTPGTVLDWCSKLKFIDPKKIKV  237

Query  367  LVLDEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF  425
             VLDEAD ++ +QG+ D   R+   +P      +  Q+++ SAT     V K ++K++  
Sbjct  238  FVLDEADVMIATQGHQDQSIRIQRMLP------RNCQMLLFSATFED-SVWKFAQKVVPD  290

Query  426  PTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW  485
            P  + LK E+   DT+    V  + + ++                               
Sbjct  291  PNVIKLKREEETLDTIKQYYVLCSSRDEKF------------------------------  320

Query  486  SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL  545
             +A+  L G   +         QA+IFC T+     L            K+GHQ +   L
Sbjct  321  -QALCNLYGAITIA--------QAMIFCHTRKTASWL-------AAELSKEGHQVAL--L  362

Query  546  HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEK------QNY  599
             G+    +R   +ERF++G  + L+ T+V ARGID+  V  VIN  LP +K      + Y
Sbjct  363  SGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETY  422

Query  600  VHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLL  659
            +HRIGR GR  + GLA+++V ++                               + M +L
Sbjct  423  LHRIGRTGRFGKRGLAVNMVDSK-------------------------------HSMNIL  451

Query  660  SEIEEHLNCTISQVEPD  676
            + I+EH N  I +++ D
Sbjct  452  NRIQEHFNKKIERLDTD  468


 Score = 39.7 bits (91),  Expect = 0.087, Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 39/64 (61%), Gaps = 2/64 (3%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSIPV  60
            +F E+ + P++ Q V  M +  P+ IQ  ++P++L     +++  +++G+GKT AF + +
Sbjct  92   SFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM  151

Query  61   IQIV  64
            +  V
Sbjct  152  LSRV  155


>sp|P0CQ87|DBP5_CRYNB ATP-dependent RNA helicase DBP5 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=DBP5 PE=3 SV=1
Length=546

 Score = 113 bits (282),  Expect = 6e-25, Method: Compositional matrix adjust.
 Identities = 95/341 (28%), Positives = 157/341 (46%), Gaps = 73/341 (21%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+A+ + PSRELA Q    + Q  ++    ++   L I G  +R+  S ++    I++GT
Sbjct  219  PQAICIAPSRELARQIQEVVDQIGQFT---QVGTFLAIPGSWSRN--SRIDK--QILIGT  271

Query  347  PGRLDDLVSTGK--LNLSQVRFLVLDEADGLLSQ-GYSDFINRMHNQIPQVTSDGKRLQV  403
            PG L D++  G   L+   +R LVLDEAD L++Q G  +   R+   +P        +Q 
Sbjct  272  PGTLVDMLMRGSRILDPRMIRVLVLDEADELIAQQGLGEQTFRIKQLLP------PNVQN  325

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            ++ SAT +  DV++ +++       + L+ ED   D +  + +                 
Sbjct  326  VLFSATFND-DVQEFADRFAPEANKIFLRKEDITVDAIRQLYLE----------------  368

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                            +S +   EA+  L   Y    I      Q+I+FC+ K+  D++ 
Sbjct  369  ---------------CDSEDQKYEALSAL---YDCLVIG-----QSIVFCKRKVTADHIA  405

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
            +  I +G          +   LHGD+   ER   L+ F+ G+ + LI T+V ARGIDI  
Sbjct  406  ERLISEG---------HAVASLHGDKLSQERDAILDGFRNGETKVLITTNVIARGIDIPA  456

Query  584  VPYVINVTLPD--------EKQNYVHRIGRVGRAERMGLAI  616
            V  V+N  +PD        + + Y+HRIGR GR  R G ++
Sbjct  457  VNMVVNYDVPDLGPGGNGPDIETYIHRIGRTGRFGRKGCSV  497


 Score = 33.5 bits (75),  Expect = 8.8, Method: Compositional matrix adjust.
 Identities = 17/72 (24%), Positives = 42/72 (58%), Gaps = 2/72 (3%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGG--DVLMAAETGSGKTGAFSIPV  60
            +F E+ +  ++ + +    +  P+ IQ +++PL+L     +++  +++G+GKT AF++ +
Sbjct  149  SFKELNLHEDLMKGIIAAGFQKPSKIQEKALPLLLSNPPRNLIGQSQSGTGKTAAFTLNM  208

Query  61   IQIVYETLKDQQ  72
            +  V  T+   Q
Sbjct  209  LSRVDPTIPTPQ  220


>sp|P20449|DBP5_YEAST ATP-dependent RNA helicase DBP5 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP5 
PE=1 SV=2
Length=482

 Score = 112 bits (280),  Expect = 7e-25, Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 157/341 (46%), Gaps = 69/341 (20%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            +P+A+ + PSRELA QTL  +++  K+    K+   LI+     +++    +    ++VG
Sbjct  162  SPQAICLAPSRELARQTLEVVQEMGKFT---KITSQLIVPDSFEKNK----QINAQVIVG  214

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            TPG + DL+    + L +++  VLDEAD +L  QG  D   R+   +P+ T      Q++
Sbjct  215  TPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDT------QLV  268

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT     V++ ++KI+     ++L+  +   D +  + +    + D+          
Sbjct  269  LFSATFADA-VRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKF---------  318

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                                      +L   Y +  I       +IIF  TK   + L  
Sbjct  319  -------------------------DVLTELYGLMTI-----GSSIIFVATKKTANVL--  346

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
                  G    +GH+ S   LHGD +  ER + ++ F++G  + LI T+V ARGIDI  V
Sbjct  347  -----YGKLKSEGHEVSI--LHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTV  399

Query  585  PYVINVTLPD------EKQNYVHRIGRVGRAERMGLAISLV  619
              V+N  LP       +   Y+HRIGR GR  R G+AIS V
Sbjct  400  SMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFV  440


 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 40/61 (66%), Gaps = 2/61 (3%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGG--DVLMAAETGSGKTGAFSIPV  60
            +F E+G+ PE+ + +  M +  P+ IQ  ++PL+L     +++  +++G+GKT AFS+ +
Sbjct  93   SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM  152

Query  61   I  61
            +
Sbjct  153  L  153


>sp|A6ZNQ1|DBP5_YEAS7 ATP-dependent RNA helicase DBP5 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DBP5 PE=3 SV=1
Length=482

 Score = 112 bits (280),  Expect = 7e-25, Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 157/341 (46%), Gaps = 69/341 (20%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            +P+A+ + PSRELA QTL  +++  K+    K+   LI+     +++    +    ++VG
Sbjct  162  SPQAICLAPSRELARQTLEVVQEMGKFT---KITSQLIVPDSFEKNK----QINAQVIVG  214

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            TPG + DL+    + L +++  VLDEAD +L  QG  D   R+   +P+ T      Q++
Sbjct  215  TPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDT------QLV  268

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT     V++ ++KI+     ++L+  +   D +  + +    + D+          
Sbjct  269  LFSATFADA-VRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKF---------  318

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                                      +L   Y +  I       +IIF  TK   + L  
Sbjct  319  -------------------------DVLTELYGLMTI-----GSSIIFVATKKTANVL--  346

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
                  G    +GH+ S   LHGD +  ER + ++ F++G  + LI T+V ARGIDI  V
Sbjct  347  -----YGKLKSEGHEVSI--LHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTV  399

Query  585  PYVINVTLPD------EKQNYVHRIGRVGRAERMGLAISLV  619
              V+N  LP       +   Y+HRIGR GR  R G+AIS V
Sbjct  400  SMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFV  440


 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 40/61 (66%), Gaps = 2/61 (3%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGG--DVLMAAETGSGKTGAFSIPV  60
            +F E+G+ PE+ + +  M +  P+ IQ  ++PL+L     +++  +++G+GKT AFS+ +
Sbjct  93   SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM  152

Query  61   I  61
            +
Sbjct  153  L  153


>sp|Q9HGM5|DBP8_SCHPO ATP-dependent RNA helicase dbp8 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp8 
PE=3 SV=1
Length=453

 Score = 112 bits (279),  Expect = 7e-25, Method: Compositional matrix adjust.
 Identities = 102/357 (29%), Positives = 156/357 (44%), Gaps = 59/357 (17%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P+   ALI+ P+RELA Q     +QF     N  L+  LI+GG+    Q   L     +V
Sbjct  73   PSGIFALILTPTRELAIQI---DEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVV  129

Query  344  VGTPGRLDDLV-STGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
            V TPGRL DL+ S G+     L +++FLV+DEAD LLS  ++D ++   + +P   S+ +
Sbjct  130  VATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLP--ASEDR  187

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED--SVPDTVHHVVVPVNPKTDRLWE  457
            +  +   + T     +K   +K    P W+     D  SVP T+    + V+ +    + 
Sbjct  188  QTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNISVPSTLQQSYIFVSSQVREAY-  246

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
                 H+ T                                  I E+    AIIF     
Sbjct  247  ---LVHLLT----------------------------------IPENAKKSAIIFVNRTR  269

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
              + +             +  +     LH +    ER  +L RF+    + L+ TDVA+R
Sbjct  270  TAELIYSIL---------RLLELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASR  320

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            G+DI  V  VIN  LP +  +Y+HR+GR  RA R G +IS+V TE++    H    R
Sbjct  321  GLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIV-TERDVDLVHAIEDR  376


 Score = 50.8 bits (120),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 0/60 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +FS++G+ P +   ++ +    PTDIQ   I  IL G + +  A+TGSGKT AF++P+I+
Sbjct  8   SFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIE  67


>sp|Q2H4D0|SUB2_CHAGB ATP-dependent RNA helicase SUB2 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=SUB2 PE=3 SV=1
Length=434

 Score = 111 bits (278),  Expect = 8e-25, Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 153/342 (45%), Gaps = 63/342 (18%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVD---IVVG  345
             L++  +RELA Q  N   +F KY+  P ++  +  GG   +    VL+N      I+VG
Sbjct  121  VLVMCHTRELAFQIRNEYNRFSKYM--PDIKTGVFYGGTPIQKDAEVLKNKETHPHIIVG  178

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGRL+ LV    L L  VR  VLDE D +L Q     + R   +I + T   K  QV++
Sbjct  179  TPGRLNALVRDKHLRLGNVRMFVLDECDKMLDQID---MRRDVQEIFRATPQQK--QVMM  233

Query  406  CSATLHSFDVKKLSEKIMHFPT--WVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
             SATL   ++K +  K M  PT  +VD   ED+   T+H +     P  +R   R     
Sbjct  234  FSATLAD-EIKPICRKFMQNPTEHYVD---EDT-KLTLHGLQQYYIPLEEREKNR-----  283

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                    K N                          + E + +Q IIF ++ I    L+
Sbjct  284  --------KLN------------------------ELLDELQFNQVIIFVKSTIRATELD  311

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
            +           +   F  + +H      ER +  + FK+ + R  + TDV  RGIDI  
Sbjct  312  KLL---------RECNFPSIAVHSGVSQEERIRRYKEFKEFNKRICVATDVFGRGIDIER  362

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +   IN  LP +  +Y+HR+GR GR    GLAIS V ++++K
Sbjct  363  INLAINYDLPADADSYLHRVGRAGRFGTKGLAISFVNSDQDK  404


 Score = 43.9 bits (102),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 0/61 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +  + PE+ +A+ +  +  P+++Q   IP  + GGD++  A++G GKT  F +  +Q 
Sbjct  52   FRDFLLKPELLRAIADCGFEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQ  111

Query  64   V  64
            V
Sbjct  112  V  112


>sp|Q5F485|DDX42_CHICK ATP-dependent RNA helicase DDX42 OS=Gallus 
gallus OX=9031 GN=DDX42 PE=2 SV=1
Length=944

 Score = 114 bits (285),  Expect = 9e-25, Method: Compositional matrix adjust.
 Identities = 93/335 (28%), Positives = 146/335 (44%), Gaps = 57/335 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P A+IV P+REL +Q  +  K+F K  +   LR + + GG +  +Q   L+ G +IVV
Sbjct  325  DGPIAVIVCPTRELCQQIHSECKRFGKAYN---LRSVAVYGGGSMWEQAKALQEGAEIVV  381

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D V     NL +V +LV DEAD +   G+   +  + +    V  D    Q +
Sbjct  382  CTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIAS---HVRPD---RQTL  435

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT     ++KL+  I+  P  V ++G+    +     +V + P     W  L +   
Sbjct  436  LFSATFRK-KIEKLARDILIDPIRV-VQGDIGEANEDVTQIVEIFPSGPSKWNWLTR---  490

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                                              R ++       ++F   K + + L  
Sbjct  491  ----------------------------------RLVEFTSSGSVLLFVTKKANAEELAN  516

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
               Q+           +   LHGD    ER + +  FKK  +  L+ TDVAARG+DI  +
Sbjct  517  NLKQE---------DHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIPSI  567

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
              VIN  +  +   + HRIGR GRA   G+A +L+
Sbjct  568  KTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL  602


 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 19/60 (32%), Positives = 37/60 (62%), Gaps = 0/60 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            ++F+  G   ++   + + ++  PT IQ + +P+ + G D++  A+TGSGKT AF  P++
Sbjct  253  SSFARFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPML  312


>sp|Q6FNA2|DBP10_CANGA ATP-dependent RNA helicase DBP10 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP10 PE=3 SV=1
Length=969

 Score = 114 bits (285),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 92/347 (27%), Positives = 152/347 (44%), Gaps = 35/347 (10%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +A+I+ PSRELA QT +  K+F +      LR +L+ GG +  DQ  ++    D+++ TP
Sbjct  187  RAIILSPSRELAMQTHSVFKEFSR---GTHLRSVLLTGGDSLEDQFGMMMTNPDVIIATP  243

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR   L     L+L  V + V DEAD L   G+ + +N +   +P         Q ++ S
Sbjct  244  GRFLHLKVEMNLDLKSVEYAVFDEADRLFEMGFQEQLNELLAALPSSR------QTLLFS  297

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDR-------LWERLG  460
            ATL +  V      +++ P  V L  E  + D +  + +    K D        + + + 
Sbjct  298  ATLPTSLVDFAKAGLVN-PVLVRLDAESKISDNLEMLFLST--KNDEREANLLYILQEVI  354

Query  461  KSHIRT-------DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFC  513
            K  + T       +D  A D+        +      K    +   +A +       ++F 
Sbjct  355  KLPLATPEQIKQLNDNKADDSDESAEEDEDKKRRKRKSFNRKAMPKANELPSEKATVVFV  414

Query  514  RTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTD  573
             T+   + L       G         +    ++G    H RK  L  F+ G    L+ TD
Sbjct  415  PTRHHVEYLSNLLKDCG---------YLVSYIYGALDQHARKSQLYNFRIGLTSILVVTD  465

Query  574  VAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            VAARG+DI  +  V+N +LP   + ++HR+GR  RA   G A S+V+
Sbjct  466  VAARGVDIPMLANVVNYSLPASSKIFIHRVGRTARAGNRGWAYSIVS  512


 Score = 50.1 bits (118),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 37/60 (62%), Gaps = 0/60 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F+  G+   I   + +  +  PT IQ ++IPLIL   D++  A TGSGKT AF +P+I+
Sbjct  116  SFASFGLSKLILVNISKRGFRQPTPIQRKTIPLILQNRDIVGMARTGSGKTAAFVLPMIE  175


>sp|Q6CH90|SUB2_YARLI ATP-dependent RNA helicase SUB2 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=SUB2 PE=3 
SV=2
Length=441

 Score = 111 bits (277),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 98/354 (28%), Positives = 156/354 (44%), Gaps = 59/354 (17%)

Query  275  AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLS  334
            + + Q + +P     +++  +RELA Q +N   +F KY+  P ++  +  GG   +  + 
Sbjct  114  STLQQLEPVPGECSVVVLCHTRELAYQIMNEYARFSKYL--PDVKTAVFYGGSPIQKDIE  171

Query  335  VLEN---GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQI  391
            +++N      ++V TPGRL  LV    L L  V+  V+DE D +L Q     + R   +I
Sbjct  172  LIQNKETSPHVIVATPGRLHALVRDKHLRLGNVKTFVIDECDKVLDQID---MRRDVQEI  228

Query  392  PQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPK  451
             +VT   K  QV++ SATL S +++ + +K M  P  + +  E  +  T+H         
Sbjct  229  FRVTPRQK--QVMMFSATL-SQEIRPICKKFMSSPLEILVDDEGKL--TLHG--------  275

Query  452  TDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAII  511
                   L + ++   DV  K   R   +                    +   + +Q II
Sbjct  276  -------LQQYYV---DVEEKSKNRKLGD-------------------LLDNLEFNQVII  306

Query  512  FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLIC  571
            F ++    + L Q     G         F C  +H      ER    + FK+   R  + 
Sbjct  307  FVKSTSRANGLSQVLNANG---------FPCTAVHSGIPQEERIARYKEFKEFKKRICVS  357

Query  572  TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            TDV  RGIDI  +   IN  LP E   Y+HR+GR GR    GLAIS V+T ++K
Sbjct  358  TDVFGRGIDIERINLAINYDLPAEADQYLHRVGRAGRFGTKGLAISFVSTPEDK  411


 Score = 39.7 bits (91),  Expect = 0.097, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 33/59 (56%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +  + PE+ +A+ +  +  P+++Q   IP  + G DVL  A+ G GKT  F +  +Q
Sbjct  59   FRDFLLKPELLRAIVDCGFEHPSEVQQVCIPQSILGTDVLCQAKAGVGKTAVFVLSTLQ  117


>sp|Q4P3W3|DBP10_USTMA ATP-dependent RNA helicase DBP10 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP10 PE=3 
SV=1
Length=1154

 Score = 114 bits (284),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 98/368 (27%), Positives = 154/368 (42%), Gaps = 52/368 (14%)

Query  288  KALIVEPSRELAEQTLNNIKQFKK----------YIDNPKLRELLIIGGVAARDQLSVLE  337
            K+LI+ PSRELA Q L   K+  +                +R  +I+GG +  +Q  ++ 
Sbjct  219  KSLILCPSRELAVQILRVGKEIARGWKADAGEGQDSRGEAIRWAIIVGGESLDEQFGIMS  278

Query  338  NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD  397
            N  D+V+ TPGR+  L     L+L  V ++V DEAD L   G+++ +  M  ++P     
Sbjct  279  NNPDVVIATPGRMLHLTVEMNLDLKSVEYVVFDEADRLFEMGFAEQLEEMLLRLPPTR--  336

Query  398  GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPK------  451
                Q ++ SATL    V+     +   P  V L  +  +   +      V P       
Sbjct  337  ----QTLLFSATLPKKLVEFTKAGLQANPKLVRLDADSKISADLRMAFFSVKPSEKEAAL  392

Query  452  ----TDRLWERLGKSHIRTDDVHAKDNTRPGANSPE-MWSEAIKILKGEYAVRAIKEHKM  506
                 D +   LG+   R  D  A+ N     N  +   S      + E+  +   +H  
Sbjct  393  LVLLRDVIGVPLGEQAARDLDEEAQFNEDASDNQADGQRSRGYGNRRAEFKGKTKDKHLG  452

Query  507  D----------------QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRK  550
            +                Q IIFC TK   + L       G         ++C  ++    
Sbjct  453  NKRKRGGPGGALELLPHQTIIFCATKHHVEYLLLLLTTTG---------YACSHIYSSLD  503

Query  551  PHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAE  610
               R   + RF++G    LI TDVAARGID+  + +V+N   P + + +VHR+GR  RA 
Sbjct  504  QATRGIQMSRFRRGQNSLLIVTDVAARGIDLPVLEHVVNFDFPPQPRTFVHRVGRTARAG  563

Query  611  RMGLAISL  618
            R G A S+
Sbjct  564  RNGWAWSM  571


 Score = 43.9 bits (102),  Expect = 0.006, Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSIPVI  61
            F  MG+ P + +++    +  PT IQ ++IP I+     DV+  A TGSGKT A+ IP+I
Sbjct  146  FQSMGLHPSLLRSLLIRGFTTPTPIQRQAIPAIMSQPPRDVVGMARTGSGKTLAYLIPLI  205


>sp|Q96GQ7|DDX27_HUMAN Probable ATP-dependent RNA helicase DDX27 
OS=Homo sapiens OX=9606 GN=DDX27 PE=1 SV=2
Length=796

 Score = 113 bits (283),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 152/347 (44%), Gaps = 57/347 (16%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + L++ P+REL  Q  +  +Q  ++ +   +   L +GG+  + Q + L    DI++ TP
Sbjct  291  RVLVLVPTRELGIQVHSVTRQLAQFCN---ITTCLAVGGLDVKSQEAALRAAPDILIATP  347

Query  348  GRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            GRL D L +    +LS +  L+LDEAD +L     ++      +I ++ S  +  Q ++ 
Sbjct  348  GRLIDHLHNCPSFHLSSIEVLILDEADRMLD----EYFEEQMKEIIRMCSHHR--QTMLF  401

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT+   +VK L+   +  P  + +     V   +    + + P              R 
Sbjct  402  SATMTD-EVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPN-------------RE  447

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
             D  A                    +      R   +H M    +F +TK     +    
Sbjct  448  GDREA--------------------IVAALLTRTFTDHVM----LFTQTKKQAHRMHILL  483

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
               G              LHG+    +R + L RFK   +  L+ TDVAARG+DI GV  
Sbjct  484  GLMG---------LQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKT  534

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
            VIN T+P+  ++YVHR+GR  RA R G ++SLV  ++ K+   +  +
Sbjct  535  VINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKA  581


 Score = 49.7 bits (117),  Expect = 9e-05, Method: Compositional matrix adjust.
 Identities = 24/65 (37%), Positives = 41/65 (63%), Gaps = 1/65 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F +M +   + +A+  M +  PT IQ   IP+ L G D+   A TG+GKT AF++PV++
Sbjct  219  SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE  278

Query  63   -IVYE  66
             ++Y+
Sbjct  279  RLIYK  283


>sp|A4RBS3|SUB2_PYRO7 ATP-dependent RNA helicase SUB2 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=SUB2 PE=3 SV=1
Length=436

 Score = 110 bits (276),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 152/342 (44%), Gaps = 63/342 (18%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVD---IVVG  345
             L++  +RELA Q  N   +F KY+  P ++  +  GG   +    +L+N      I+VG
Sbjct  123  VLVMCHTRELAFQIRNEYNRFSKYM--PDIKTGVFFGGTPIQKDAELLKNKETHPHIIVG  180

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGRL+ LV    L LS VR  VLDE D +L Q     + R   +I + T   K  QV++
Sbjct  181  TPGRLNALVRDKFLRLSSVRIFVLDECDKMLDQID---MRRDVQEIFRATPQQK--QVMM  235

Query  406  CSATLHSFDVKKLSEKIMHFPT--WVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
             SATL S ++K + +K M  PT  +VD   + ++     + V     + +R    L    
Sbjct  236  FSATL-SDEIKPICKKFMQNPTEHYVDEDTKLTLHGLQQYFVALEEKEKNRKLNEL----  290

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
               DD+                                   + +Q IIF ++ +    L+
Sbjct  291  --LDDL-----------------------------------QFNQVIIFVKSTLRATELD  313

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
            +           +   F  + +H      ER +  + FK+ + R  + TDV  RGIDI  
Sbjct  314  KLL---------RECNFPSIAVHSGVSQEERIRRYKEFKEFNKRICVATDVFGRGIDIER  364

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +   IN  +P +  +Y+HR+GR GR    GLA+S V  +++K
Sbjct  365  INLAINYDMPADADSYLHRVGRAGRFGTKGLAVSFVTNDQDK  406


 Score = 42.7 bits (99),  Expect = 0.009, Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 0/61 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +  + PE+ +A+ +  +  P+++Q   IP  + GGD++  A++G GKT  F +  +Q 
Sbjct  54   FRDFLLKPELLRAIGDCGFEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQ  113

Query  64   V  64
            V
Sbjct  114  V  114


>sp|Q6FW42|DRS1_CANGA ATP-dependent RNA helicase DRS1 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DRS1 PE=3 SV=1
Length=725

 Score = 113 bits (282),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 96/389 (25%), Positives = 181/389 (47%), Gaps = 54/389 (14%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            + + +++ P+RELA Q  +  K+  +++ N  L   L +GG+  R Q  +L+   DIV+ 
Sbjct  277  STRVIVLTPTRELAIQVADVGKKIGQFVSN--LTFGLAVGGLNLRQQEQMLKTRPDIVIA  334

Query  346  TPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            TPGR +D + ++   N+  V  LV+DEAD +L  G+ D +N + + +P       + Q +
Sbjct  335  TPGRFIDHIRNSASFNVDSVEVLVIDEADRMLEDGFQDELNEIMSLLPS------KRQTL  388

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT++S  +K+L    +  P              V  ++ P  PK  +   +L +  +
Sbjct  389  LFSATMNS-RIKQLISLSLKRP--------------VRIMIDP--PK--QAATKLTQEFV  429

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
            R   +  +D+ +P      +++           +R +  +   + ++F   K     L  
Sbjct  430  R---IRKRDHLKPSL----LFN----------LIRKLDPNGQKRIVVFVARKDMAHKLRI  472

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
                 G          +   LHG     +R  ++ +FK   V  LICTD+A+RG+DI  +
Sbjct  473  ILGLLG---------MAVAELHGSLTQEQRLDSVNKFKSLQVPVLICTDLASRGLDIPKI  523

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLK  644
              VIN  +P   + Y+HR+GR  RA R G +I+ V     +      + RG         
Sbjct  524  EVVINYDMPKSYEIYLHRVGRTARAGREGRSITFVGEASAERSIVKDAIRGVNDSEIPGS  583

Query  645  EDGGCTIWYNEMQLLSEIEEHLNCTISQV  673
            +  G  + +N+++  ++I E+++ T+  +
Sbjct  584  KAVGRNVDWNQVEETNKIVENMDQTVQDI  612


 Score = 52.0 bits (123),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 23/68 (34%), Positives = 44/68 (65%), Gaps = 1/68 (1%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F+++ +   + + +  + ++ P+ IQ+ +IP+ L G D++  A TGSGKT AF IP+I+
Sbjct  207  TFNDLALSRPVMKGLSNLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIE  266

Query  63   -IVYETLK  69
             ++Y+  K
Sbjct  267  RLLYKPAK  274


>sp|Q6BGU8|DBP8_DEBHA ATP-dependent RNA helicase DBP8 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP8 PE=3 SV=2
Length=441

 Score = 110 bits (276),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 101/349 (29%), Positives = 164/349 (47%), Gaps = 69/349 (20%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P+    L++ P+RELA Q     +QF     +  ++  +I+GG     Q   L+     V
Sbjct  67   PSGIYGLVLTPTRELALQIA---EQFAALGSSMNIKVSVIVGGEDIVKQALELQRRPHFV  123

Query  344  VGTPGRL-DDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
            V TPGRL D ++++G+     L +V++L+LDEAD LLS  +   + R  N +P   S  K
Sbjct  124  VATPGRLADHILNSGEDTVCGLRRVKYLILDEADRLLSNSFGGDLERCFNILP---STDK  180

Query  400  RLQVIVCSATLHSFDVKKLSE------KIMHFPTWVDLKGEDSVPDT--VHHVVVPVNPK  451
            R Q ++ +AT+    V+ L +      K+  F   V+   + ++P T  V +V VP    
Sbjct  181  R-QTLLFTATVTDA-VRALKDRPVPKGKLPVFIHEVETVDKVAIPSTLSVKYVFVP----  234

Query  452  TDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAII  511
                      S+++   +H+        N P+ +S+++                   +II
Sbjct  235  ----------SYVKEAYLHSI------LNLPQ-YSDSL-------------------SII  258

Query  512  FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLIC  571
            F       + L +           +  +F    LH +    ER  +L RFK G  + LI 
Sbjct  259  FTNRTATAELLRRTL---------RKLEFRVASLHSEMPQTERTNSLHRFKAGAAKILIA  309

Query  572  TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            TDVA+RG+DI  V  V+N  +P +  +++HR+GR  RA R G AIS+VA
Sbjct  310  TDVASRGLDIPTVELVVNYDIPADADDFIHRVGRTARAGRKGDAISIVA  358


 Score = 51.6 bits (122),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 0/59 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
           +F E+GV   +++A+  M    PT IQ+  IP IL G D +  A+TGSGKT AF+ P++
Sbjct  2   SFEELGVSKWLSEALNSMKIHTPTTIQSACIPKILKGHDCIGGAKTGSGKTIAFAAPML  60


>sp|P0CQ92|DRS1_CRYNJ ATP-dependent RNA helicase DRS1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=DRS1 PE=3 SV=1
Length=808

 Score = 113 bits (282),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 103/347 (30%), Positives = 154/347 (44%), Gaps = 65/347 (19%)

Query  286  APKALIVEPSRELAEQ--TLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            A + L++ P+RELA Q   +      K  +D   +R  L++GG++   Q   L    DI+
Sbjct  295  ACRVLVLCPTRELAVQCEAVGKALAEKGGLD---VRFALLVGGLSLNAQAHTLRTLPDIL  351

Query  344  VGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            + TPGRL D L +T    LS +  LV+DEAD +L  G++D +  +    P+        Q
Sbjct  352  IATPGRLIDHLTNTPSFTLSALDVLVIDEADRMLEAGFTDELEEIIKACPRSR------Q  405

Query  403  VIVCSATLHSFDVKKLSEKIMHFP--TWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLG  460
             ++ SAT+    V +L +  +  P   +VD K   +   T   V                
Sbjct  406  TMLFSATMTD-SVDELVKLSLDKPIRVFVDPKRNTARGLTQEFV----------------  448

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
               IR+DD          + SP + +            R I+E    + IIF R+K    
Sbjct  449  --RIRSDD----------SRSPSLLA---------LCKRTIRE----KCIIFFRSKALAH  483

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             +   F   G              LHG+    +R Q L  FK G V +L+ TD+A+RG+D
Sbjct  484  QMRIVFGLFG---------LKAAELHGNLTQEQRLQALNDFKAGTVDYLLATDLASRGLD  534

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
            I GV  VIN  +P +   Y HR+GR  RA R G ++SLV     K+ 
Sbjct  535  IKGVETVINYDMPGQLAQYTHRVGRTARAGRKGRSVSLVGEADRKML  581


 Score = 56.2 bits (134),  Expect = 9e-07, Method: Compositional matrix adjust.
 Identities = 25/61 (41%), Positives = 41/61 (67%), Gaps = 0/61 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            ++F+ M +   + +A+  + +  PT IQA +IPL L G D+L +A TGSGKT AF +P++
Sbjct  222  SSFTAMNLSRPLLRALTSLQFTAPTPIQARAIPLALLGRDILGSAVTGSGKTAAFMVPIL  281

Query  62   Q  62
            +
Sbjct  282  E  282


>sp|P0CQ93|DRS1_CRYNB ATP-dependent RNA helicase DRS1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=DRS1 PE=3 SV=1
Length=808

 Score = 113 bits (282),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 103/347 (30%), Positives = 154/347 (44%), Gaps = 65/347 (19%)

Query  286  APKALIVEPSRELAEQ--TLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            A + L++ P+RELA Q   +      K  +D   +R  L++GG++   Q   L    DI+
Sbjct  295  ACRVLVLCPTRELAVQCEAVGKALAEKGGLD---VRFALLVGGLSLNAQAHTLRTLPDIL  351

Query  344  VGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            + TPGRL D L +T    LS +  LV+DEAD +L  G++D +  +    P+        Q
Sbjct  352  IATPGRLIDHLTNTPSFTLSALDVLVIDEADRMLEAGFTDELEEIIKACPRSR------Q  405

Query  403  VIVCSATLHSFDVKKLSEKIMHFP--TWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLG  460
             ++ SAT+    V +L +  +  P   +VD K   +   T   V                
Sbjct  406  TMLFSATMTD-SVDELVKLSLDKPIRVFVDPKRNTARGLTQEFV----------------  448

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
               IR+DD          + SP + +            R I+E    + IIF R+K    
Sbjct  449  --RIRSDD----------SRSPSLLA---------LCKRTIRE----KCIIFFRSKALAH  483

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             +   F   G              LHG+    +R Q L  FK G V +L+ TD+A+RG+D
Sbjct  484  QMRIVFGLFG---------LKAAELHGNLTQEQRLQALNDFKAGTVDYLLATDLASRGLD  534

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
            I GV  VIN  +P +   Y HR+GR  RA R G ++SLV     K+ 
Sbjct  535  IKGVETVINYDMPGQLAQYTHRVGRTARAGRKGRSVSLVGEADRKML  581


 Score = 56.2 bits (134),  Expect = 9e-07, Method: Compositional matrix adjust.
 Identities = 25/61 (41%), Positives = 41/61 (67%), Gaps = 0/61 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            ++F+ M +   + +A+  + +  PT IQA +IPL L G D+L +A TGSGKT AF +P++
Sbjct  222  SSFTAMNLSRPLLRALTSLQFTAPTPIQARAIPLALLGRDILGSAVTGSGKTAAFMVPIL  281

Query  62   Q  62
            +
Sbjct  282  E  282


>sp|Q759L6|SUB2_EREGS ATP-dependent RNA helicase SUB2 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=SUB2 PE=3 SV=1
Length=438

 Score = 110 bits (275),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 92/346 (27%), Positives = 156/346 (45%), Gaps = 59/346 (17%)

Query  283  LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN---G  339
            +P     +++  +RELA Q  N   +F KY+  P ++  +  GG   R  + +L+N    
Sbjct  119  VPGEVSVVVLCNARELAYQIRNEYLRFSKYM--PDVKTAVFYGGTDTRKDIELLKNKDTA  176

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
              IVV TPGRL  LV    ++LS V+  V+DE D +L +     + R    I + T   K
Sbjct  177  PHIVVATPGRLKALVRDNNIDLSHVKNFVIDECDKVLEELD---MRRDVQDIFRATPRDK  233

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              QV++ SATL S +++ +  + +  P  +++  +D    T+H                L
Sbjct  234  --QVMMFSATL-SQEIRPICRRFLQNP--LEIFVDDEAKLTLHG---------------L  273

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
             + +IR ++                        K     + + + + +Q IIF ++ +  
Sbjct  274  QQYYIRLEERE----------------------KNRKLAQLLDDLEFNQVIIFVKSTLRA  311

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            + L +               F  + +HG  +  ER    + FK+ + R  + TDV  RGI
Sbjct  312  NELTKLL---------NASNFPAITVHGHMRQEERIARYKAFKEFEKRICVSTDVFGRGI  362

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            DI  +   IN  +P E   Y+HR+GR GR    GLAISLV+++ ++
Sbjct  363  DIERINLAINYDMPSEADQYLHRVGRAGRFGTKGLAISLVSSKDDE  408


 Score = 43.1 bits (100),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +  + PE+++A+ +  +  P+++Q  +IP  + G DVL  A++G GKT  F +  +Q
Sbjct  56   FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQ  114


>sp|Q1DI07|SUB2_COCIM ATP-dependent RNA helicase SUB2 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=SUB2 PE=3 SV=1
Length=443

 Score = 110 bits (275),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 99/351 (28%), Positives = 162/351 (46%), Gaps = 59/351 (17%)

Query  277  VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL  336
            + Q + +P     L++  +RELA Q  N   +F KY+  P ++  +  GG   +  + VL
Sbjct  119  LNQLEPVPGECSILVMCHTRELAYQIKNEYARFSKYL--PDVKTAVFYGGTPMQKDIEVL  176

Query  337  ENG---VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ  393
             +     +IVVGTPGRL+ LV   KL+L  ++  VLDE D +L Q     + R   +I +
Sbjct  177  SSKDTYPNIVVGTPGRLNALVREKKLSLRNIKAFVLDECDKMLDQID---MRRDVQEIFR  233

Query  394  VTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTD  453
             T   K  QV++ SATL S +++ + +K M  P  V +  +D    T+H           
Sbjct  234  STPADK--QVMMFSATL-SQEIRPICKKFMRNPLEVYV--DDDTKLTLHG----------  278

Query  454  RLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFC  513
                 L + +I+                    SEA K  K       +   + +Q IIF 
Sbjct  279  -----LQQYYIK-------------------LSEAEKNRKLN---ELLDNLEFNQVIIFV  311

Query  514  RTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTD  573
            ++ +  + L++           +   F  + +H      ER +  + FK+ + R  + TD
Sbjct  312  KSTLRANELDKLL---------RECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATD  362

Query  574  VAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            V  RGIDI  +   IN  +P +  +Y+HR+GR GR    GL+IS V++E +
Sbjct  363  VFGRGIDIERINLAINYDMPADADSYLHRVGRAGRFGTKGLSISFVSSEDD  413


 Score = 36.6 bits (83),  Expect = 0.84, Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 0/58 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            F +  + PE+ +A+ +  +  P+++Q   IP  +   DVL  A++G GKT  F +  +
Sbjct  62   FRDFLLKPELLRAITDCGFEHPSEVQQVCIPTAILKVDVLCQAKSGLGKTAVFVLTTL  119


>sp|A7F4L5|DRS1_SCLS1 ATP-dependent RNA helicase drs1 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=drs1 PE=3 SV=1
Length=801

 Score = 112 bits (281),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 99/383 (26%), Positives = 166/383 (43%), Gaps = 60/383 (16%)

Query  281  KFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGV  340
            K +P +  A+++ P+RELA Q      +   + D   ++  L +GG++ + Q + L    
Sbjct  335  KKVPTSRVAILM-PTRELAIQCHAVATKLASHTD---IKFCLAVGGLSLKVQEAELRLRP  390

Query  341  DIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
            D+++ TPGR +D + ++    +  +  LVLDEAD +L  G++D +N +   IP      K
Sbjct  391  DVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEAGFADELNEILTTIP------K  444

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              Q ++ SAT+ S  V  L    ++ P  + +  + S   T+    + + P   R  +R+
Sbjct  445  SRQTMLFSATMSS-SVDNLIRVGLNRPVRLLVDSQKSTAGTLTQEFIRLRP--GREGKRM  501

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
            G                                   Y +        D+ I+F R K + 
Sbjct  502  G-----------------------------------YLLYLCANVYTDRVIVFFRQKKEA  526

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
                  F   G              LHG     +R +++E F+ G   FL+ TD+A+RG+
Sbjct  527  HRARIIFGLSG---------LKATELHGSMSQEQRIKSVEAFRDGKASFLLATDLASRGL  577

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW-YHVCSSRGKGC  638
            DI GV  VIN   P     Y+HR+GR  RA R G A ++ A    KV    V +SR +G 
Sbjct  578  DIKGVDTVINYEAPQSHDIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKASRTQGA  637

Query  639  -YNTRLKEDGGCTIWYNEMQLLS  660
               +R+ E      W  ++  ++
Sbjct  638  KVVSRVIEASEADSWSEKVDEMA  660


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 0/61 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F  M +   I + +  + +  PT IQ+++IP+ L G DV+  A TGSGKT AF +PV+
Sbjct  268  STFQSMSLSRPILRGLATVGFTQPTPIQSKTIPVALLGKDVVGGAVTGSGKTAAFIVPVL  327

Query  62   Q  62
            +
Sbjct  328  E  328


>sp|Q0U8V9|DBP8_PHANO ATP-dependent RNA helicase DBP8 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=DBP8 PE=3 SV=1
Length=508

 Score = 111 bits (277),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 94/336 (28%), Positives = 154/336 (46%), Gaps = 55/336 (16%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPK-LRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            LI+ P+RELA Q    +K     I  P+ ++ +L+ GG   R+Q   L +   +V+ TPG
Sbjct  149  LIITPTRELAIQIYEQVK----AISAPQSMKPILVTGGSDQREQAIALASRPHVVIATPG  204

Query  349  RLDDLVSTGKLN----LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            RL + + T   +    L +VRF+V DEAD LL+ G    I  +   +  +    +R Q +
Sbjct  205  RLAEHIKTSGEDTICGLRRVRFVVFDEADRLLAPGRGSMIPDIETCLSVLPPKEQR-QTL  263

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + +AT+               P  + LK +   P  +   V  V+ +T      L + ++
Sbjct  264  LFTATVT--------------PEVLALKSQPRAPGRLPIFVCEVDTETLATPASLSQLYL  309

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFC-RTKIDCDNLE  523
            +T   H +        +P   ++++                    IIFC RTK     L 
Sbjct  310  QTPVTHKECYLHVLLLTPLNLTKSV--------------------IIFCNRTK--TATLL  347

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
            +Y ++         H+ +   LH   K  +R  NL RF+    R L+ TDVAARG+DI  
Sbjct  348  EYMLRM------LDHRVTA--LHSGLKQQDRISNLARFRAQAARILVATDVAARGLDIPE  399

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            V  V+N  +P +  +Y+HR+GR  RA R G +++ +
Sbjct  400  VGLVVNFDVPRDPDDYIHRVGRTARAGRPGNSVTFI  435


 Score = 50.4 bits (119),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 37/60 (62%), Gaps = 0/60 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F+ + V P +  ++  M+   PT IQ   IP IL G D +  + TG+GKT AFS+P++Q
Sbjct  78   SFASIDVAPWLVASLASMEIKRPTGIQKACIPEILKGRDCIGGSRTGTGKTVAFSVPILQ  137


>sp|Q0CNX1|DBP8_ASPTN ATP-dependent RNA helicase dbp8 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dbp8 
PE=3 SV=1
Length=527

 Score = 111 bits (277),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 151/341 (44%), Gaps = 51/341 (15%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            A+++ P+RELA   L   +QFK       ++ +LI GG   R Q   L     +V+ TPG
Sbjct  157  AVVLTPTRELA---LQIYEQFKAISAPQSMKPVLITGGTDMRPQALALSQRPHVVIATPG  213

Query  349  RLDDLVSTGKLN----LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            RL D + T   +    L +VR +VLDEAD LL+ G    +  +   +  +    +R Q +
Sbjct  214  RLADHIQTSGEDTVRGLKRVRMVVLDEADRLLAPGPGSMLPDVETCLSALPPSSER-QTL  272

Query  405  VCSATLHSFDVKKL------SEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER  458
            + +AT+ + +V+ L      S K   F T ++  G  S           + P   + + +
Sbjct  273  LFTATV-TPEVRALKSMPRASTKPPVFVTEIEAGGTTSAGADGAAPKSTLPPTLKQTYLK  331

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
            +  +H R   +H   +T   A  P                          AIIFC     
Sbjct  332  VPMTH-REAFLHVLLSTDGNAGKP--------------------------AIIFCNHTKT  364

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
             D LE+   +         H+ +   LH      ER  NL RF+    R L+ TDVA+RG
Sbjct  365  ADLLERLLRRLA-------HRVTS--LHSLLPQSERSSNLARFRASAARILVATDVASRG  415

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +DI  V  V+N  +P    +YVHR+GR  RA R G A++LV
Sbjct  416  LDIPSVALVVNYDVPRNPDDYVHRVGRTARAGRRGEAVTLV  456


 Score = 47.0 bits (110),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 0/61 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            ++F  + V P +  ++  M    PT IQ   IP IL G D +  + TGSGKT AF++P++
Sbjct  86   SSFKALNVAPWLIGSLTTMAVRKPTAIQRACIPEILKGRDCIGGSRTGSGKTIAFAVPIL  145

Query  62   Q  62
            Q
Sbjct  146  Q  146


>sp|Q0JM17|RH56_ORYSJ DEAD-box ATP-dependent RNA helicase 56 OS=Oryza 
sativa subsp. japonica OX=39947 GN=AIP1 PE=1 SV=2
Length=432

 Score = 110 bits (274),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 157/334 (47%), Gaps = 57/334 (17%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGV-DIVVGTP  347
            AL++  +RELA Q  +  ++F KY+  P+++  +  GGV  +    +L+N    IVVGTP
Sbjct  122  ALVLCHTRELAYQICHEFERFSKYL--PEVKVAVFYGGVHIKKHKDLLKNDCPHIVVGTP  179

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+  L     L+L  VR  +LDE D +L    S  + R   +I ++T   K  QV++ S
Sbjct  180  GRILALAREKDLSLKNVRHFILDECDKMLD---SLDMRRDVQEIFKMTPHDK--QVMMFS  234

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL S +++ + +K M  P  +++  +D    T+H +V               + +I+  
Sbjct  235  ATL-SKEIRPVCKKFMQDP--MEIYVDDEAKLTLHGLV---------------QHYIK--  274

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                              SEA K  K    + A+     +Q +IF ++      L +   
Sbjct  275  -----------------LSEAEKNRKLNDLLDALD---FNQVVIFVKSVSRAAELNKLLC  314

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
            +           F  + +H      ER    + FK+G  R L+ TD+  RGIDI  V  V
Sbjct  315  ECN---------FPAISIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNIV  365

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT  621
            IN  +PD   +Y+HR+GR GR    GLAI+ V++
Sbjct  366  INYDMPDSADSYLHRVGRAGRFGTKGLAITFVSS  399


 Score = 43.9 bits (102),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 37/61 (61%), Gaps = 0/61 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F +  + PE+ +A+++  +  P+++Q E IP  + G DV+  A++G GKT  F +  +
Sbjct  51   SGFRDFLLKPELLRAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSL  110

Query  62   Q  62
            Q
Sbjct  111  Q  111


>sp|A6RUH2|DRS1_BOTFB ATP-dependent RNA helicase drs1 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=drs1 PE=3 SV=1
Length=801

 Score = 112 bits (280),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 99/383 (26%), Positives = 166/383 (43%), Gaps = 60/383 (16%)

Query  281  KFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGV  340
            K +P +  A+++ P+RELA Q      +   + D   ++  L +GG++ + Q + L    
Sbjct  335  KKVPTSRVAILM-PTRELAIQCHAVATKLASHTD---IKFCLAVGGLSLKVQEAELRLRP  390

Query  341  DIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
            D+++ TPGR +D + ++    +  +  LVLDEAD +L  G++D +N +   IP      K
Sbjct  391  DVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEAGFADELNEILTTIP------K  444

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              Q ++ SAT+ S  V  L    ++ P  + +  + S   T+    + + P   R  +R+
Sbjct  445  SRQTMLFSATMSS-SVDNLIRVGLNRPVRLLVDSQKSTAGTLVQEFIRLRP--GREGKRM  501

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
            G                                   Y +        D+ I+F R K + 
Sbjct  502  G-----------------------------------YLLYLCANVYTDRVIVFFRQKKEA  526

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
                  F   G              LHG     +R +++E F+ G   FL+ TD+A+RG+
Sbjct  527  HRARIIFGLSG---------LKATELHGSMSQEQRIKSVEAFRDGKASFLLATDLASRGL  577

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW-YHVCSSRGKGC  638
            DI GV  VIN   P     Y+HR+GR  RA R G A ++ A    KV    V +SR +G 
Sbjct  578  DIKGVDTVINYEAPQSHDIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKASRTQGA  637

Query  639  -YNTRLKEDGGCTIWYNEMQLLS  660
               +R+ E      W  ++  ++
Sbjct  638  KVVSRVIEASEADSWSEKVDEMA  660


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 24/59 (41%), Positives = 37/59 (63%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  M +   I + +  + +  PT IQ+++IP+ L G DV+  A TGSGKT AF +PV++
Sbjct  270  FQSMSLSRPILRGLATVGFTQPTPIQSKTIPVALLGKDVVGGAVTGSGKTAAFVVPVLE  328


>sp|Q5ACU6|RRP3_CANAL ATP-dependent rRNA helicase RRP3 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=RRP3 
PE=3 SV=3
Length=534

 Score = 110 bits (276),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 98/350 (28%), Positives = 153/350 (44%), Gaps = 62/350 (18%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            AL++ P+RELA Q  +    F     +  LR   I+GG+   DQ   L     ++V TPG
Sbjct  189  ALVLAPTRELAFQIKDT---FDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHVIVATPG  245

Query  349  R-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            R +D L  T   +L  +++LV+DEAD LL   +   ++++   IP      KR    + S
Sbjct  246  RIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPI-----KR-TTYLFS  299

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+ +  ++KL    +H P  V +  +    D +   ++ VN                  
Sbjct  300  ATMTN-KIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVN------------------  340

Query  468  DVHAKDNTRPGANSPEMWSEAIKI-LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                           + +   I I L  E+  ++I        I+F RT           
Sbjct  341  ---------------DGYKNTILIHLLNEFMGKSI--------IVFTRTVAHA-------  370

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
              Q      +   F+ V LHG     +R  +L +FK      L+ TDVAARG+DI  V  
Sbjct  371  --QRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILVATDVAARGLDIPSVDV  428

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGK  636
            VIN  +P + + Y+HR+GR  RA R G +ISL+     +++  + S  GK
Sbjct  429  VINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRIESVLGK  478


 Score = 65.9 bits (159),  Expect = 7e-10, Method: Compositional matrix adjust.
 Identities = 27/59 (46%), Positives = 44/59 (75%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F E+ ++P++ +++E M +  PT IQ+E+IP  L G D++  A+TGSGKT AF+IP++Q
Sbjct  120  FKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQ  178


>sp|Q5JK84|RH15_ORYSJ DEAD-box ATP-dependent RNA helicase 15 OS=Oryza 
sativa subsp. japonica OX=39947 GN=AIP2 PE=1 SV=1
Length=432

 Score = 109 bits (273),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 157/334 (47%), Gaps = 57/334 (17%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGV-DIVVGTP  347
            AL++  +RELA Q  +  ++F KY+  P+++  +  GGV  +    +L+N    IVVGTP
Sbjct  122  ALVLCHTRELAYQICHEFERFSKYL--PEVKVAVFYGGVHIKKHKDLLKNDCPHIVVGTP  179

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+  L     L+L  VR  +LDE D +L    S  + R   +I ++T   K  QV++ S
Sbjct  180  GRILALAREKDLSLKNVRHFILDECDKMLD---SLDMRRDVQEIFKMTPHDK--QVMMFS  234

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL S +++ + +K M  P  +++  +D    T+H +V               + +I+  
Sbjct  235  ATL-SKEIRPVCKKFMQDP--MEIYVDDEAKLTLHGLV---------------QHYIK--  274

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                              SEA K  K    + A+     +Q +IF ++      L +   
Sbjct  275  -----------------LSEAEKNRKLNDLLDALD---FNQVVIFVKSVSRAAELNKLLC  314

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
            +           F  + +H      ER    + FK+G  R L+ TD+  RGIDI  V  V
Sbjct  315  ECN---------FPAISIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNIV  365

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT  621
            IN  +PD   +Y+HR+GR GR    GLAI+ V++
Sbjct  366  INYDMPDSADSYLHRVGRAGRFGTKGLAITFVSS  399


 Score = 43.9 bits (102),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 37/61 (61%), Gaps = 0/61 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F +  + PE+ +A+++  +  P+++Q E IP  + G DV+  A++G GKT  F +  +
Sbjct  51   SGFRDFLLKPELLRAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSL  110

Query  62   Q  62
            Q
Sbjct  111  Q  111


>sp|Q8VDM6|HNRL1_MOUSE Heterogeneous nuclear ribonucleoprotein 
U-like protein 1 OS=Mus musculus OX=10090 GN=Hnrnpul1 PE=1 
SV=1
Length=859

 Score = 112 bits (280),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 59/165 (36%), Positives = 93/165 (56%), Gaps = 23/165 (14%)

Query  97   DRGSAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCH-------------DQG  143
            DR S + +  +G          W G RA+ G+ +G+  +E+  +             D  
Sbjct  228  DRSSGYPLTIEGFAYL------WSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPH  281

Query  144  LCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGH-  202
            + R+GWS    S  LG + F +G+GGTGKKS N +F+NYG++F  +D IGC+ D + G+ 
Sbjct  282  VVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECGND  341

Query  203  --VKFSKNGKDLGLAFEIPPH-MKNQALFPACVLKNAELKFNFGE  244
              + F+KNGK +G+AF I    +  QAL+P  ++KN  ++FNFG+
Sbjct  342  VELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQ  386


>sp|Q9CWX9|DDX47_MOUSE Probable ATP-dependent RNA helicase DDX47 
OS=Mus musculus OX=10090 GN=Ddx47 PE=2 SV=2
Length=455

 Score = 109 bits (273),  Expect = 4e-24, Method: Compositional matrix adjust.
 Identities = 101/387 (26%), Positives = 169/387 (44%), Gaps = 64/387 (17%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P    AL++ P+RELA Q     +QF+    +  ++  +I+GG+ +  Q   L     IV
Sbjct  90   PQRLFALVLTPTRELAFQI---SEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIV  146

Query  344  VGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            + TPGRL D L +T   NL  +++LV+DEAD +L+  +   ++++   IP+   D K   
Sbjct  147  IATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR---DRK---  200

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
              + SAT+    V+KL    +  P    +  +    + +    + +  K           
Sbjct  201  TFLFSATMTK-KVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSK-----------  248

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
                                          K  Y V  + E   +  +IFC T   C+N 
Sbjct  249  -----------------------------FKDTYLVYILNELAGNSFMIFCST---CNNT  276

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
            ++  +        +   F+ + LHG     +R  +L +FK      L+ TDVA+RG+DI 
Sbjct  277  QRTALLL------RNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIP  330

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG--CYN  640
             V  V+N  +P   ++Y+HR+GR  RA R G AI+ V     +++  +    GK    + 
Sbjct  331  HVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPVFP  390

Query  641  TRLKEDGGCTIWYNEMQLLS--EIEEH  665
            T+ +E    T   NE Q  +  E+ EH
Sbjct  391  TQDEEVMMLTERVNEAQRFARMELREH  417


 Score = 68.9 bits (167),  Expect = 6e-11, Method: Compositional matrix adjust.
 Identities = 30/64 (47%), Positives = 45/64 (70%), Gaps = 0/64 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F ++GV   + +A +++ W  PT IQ E+IPL L G D++  AETGSGKTGAF++P++  
Sbjct  26  FKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA  85

Query  64  VYET  67
           + ET
Sbjct  86  LLET  89


>sp|A5E0U9|DBP8_LODEL ATP-dependent RNA helicase DBP8 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP8 PE=3 SV=1
Length=444

 Score = 109 bits (273),  Expect = 4e-24, Method: Compositional matrix adjust.
 Identities = 94/340 (28%), Positives = 153/340 (45%), Gaps = 64/340 (19%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR  349
            LI+ P+RELA   L   +QF        ++  +++GG     Q   L+     V+ TPGR
Sbjct  75   LILTPTRELA---LQIAEQFAALGALMNIKVCVVVGGEDFVKQTLELQKKPHFVIATPGR  131

Query  350  LDD-LVSTGKLNLS---QVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            L D ++++G+  +S   ++++LVLDEAD LLS  +   + R    +P      ++ Q ++
Sbjct  132  LADHILNSGEETVSGLRRIKYLVLDEADRLLSNSFGSDLQRCFTILPP----SEKRQTLL  187

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN----PKTDRLWERLGK  461
             +AT+    VK L +K          + E  +P  +H V   V+    PKT         
Sbjct  188  FTATVTD-AVKALKDKP---------RAEGKLPVFLHQVDAGVDQIAIPKT---------  228

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ--AIIFCRTKIDC  519
                                  M+      +K  Y    +K  K ++  A++F    +  
Sbjct  229  -------------------LSTMYVFVPSYVKEAYLTSILKLPKYEESTAVVFVNRTMTA  269

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            + L +           +  +F    LH +    ER  +L RFK G  R LI TDVA+RG+
Sbjct  270  EVLRRML---------RKLEFKVASLHSEMPQTERTNSLHRFKAGAARILIATDVASRGL  320

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            DI  V  V+N  +P +  +++HR+GR  RA R G AIS++
Sbjct  321  DIPTVELVVNFDIPADPDDFIHRVGRTARAGRKGDAISII  360


 Score = 48.1 bits (113),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 0/55 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFS  57
           +F E+GV   +++++E M    PT IQ+  IP IL G D +  A+TGSGKT AF+
Sbjct  4   SFKELGVAKWLSESLEAMKIHSPTSIQSACIPEILKGRDCIGGAKTGSGKTIAFA  58


>sp|Q9H0S4|DDX47_HUMAN Probable ATP-dependent RNA helicase DDX47 
OS=Homo sapiens OX=9606 GN=DDX47 PE=1 SV=1
Length=455

 Score = 109 bits (273),  Expect = 4e-24, Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 149/337 (44%), Gaps = 60/337 (18%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P    AL++ P+RELA Q     +QF+    +  ++  +I+GG+ +  Q   L     I+
Sbjct  90   PQRLFALVLTPTRELAFQI---SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHII  146

Query  344  VGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            + TPGRL D L +T   NL  +++LV+DEAD +L+  +   ++++   IP+   D K   
Sbjct  147  IATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR---DRK---  200

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
              + SAT+    V+KL    +  P    +  +    + +    + +  K           
Sbjct  201  TFLFSATMTK-KVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSK-----------  248

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
                                          K  Y V  + E   +  +IFC T   C+N 
Sbjct  249  -----------------------------FKDTYLVYILNELAGNSFMIFCST---CNNT  276

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
            ++  +        +   F+ + LHG     +R  +L +FK      L+ TDVA+RG+DI 
Sbjct  277  QRTALLL------RNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIP  330

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
             V  V+N  +P   ++Y+HR+GR  RA R G AI+ V
Sbjct  331  HVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFV  367


 Score = 68.9 bits (167),  Expect = 7e-11, Method: Compositional matrix adjust.
 Identities = 30/64 (47%), Positives = 45/64 (70%), Gaps = 0/64 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F ++GV   + +A +++ W  PT IQ E+IPL L G D++  AETGSGKTGAF++P++  
Sbjct  26  FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA  85

Query  64  VYET  67
           + ET
Sbjct  86  LLET  89


>sp|A3GH91|DBP5_PICST ATP-dependent RNA helicase DBP5 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DBP5 PE=3 SV=2
Length=500

 Score = 110 bits (274),  Expect = 4e-24, Method: Compositional matrix adjust.
 Identities = 105/377 (28%), Positives = 170/377 (45%), Gaps = 78/377 (21%)

Query  258  LSKAPDGYIVKSQHSGNAQVTQ------TKFLPNAP--KALIVEPSRELAEQTLNNIKQF  309
            +S  P   I +SQ SG  +         ++  P  P  + L + P+RELA QTL  I   
Sbjct  145  ISNPPRNMIGQSQ-SGTGKTAAFSLTMLSRVDPKVPSTQCLCLAPTRELARQTLEVISTM  203

Query  310  KKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVL  369
             K+ +   +   LI+     R           I+VGTPG + DL+   ++N++ V+  VL
Sbjct  204  GKFTN---ITTQLIVPDALPRGS----STNAHIIVGTPGIVMDLIRRKQINVNGVKVFVL  256

Query  370  DEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTW  428
            DEAD +L +QG  D   R+   +P+ T      Q+++ SAT  +  V++ +EK +     
Sbjct  257  DEADNMLDAQGLGDQCVRVKRTLPKTT------QLVLFSATFPT-KVRQYAEKFVPNANS  309

Query  429  VDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEA  488
            ++LK E+   D +  + +  + +  +                            E+  E 
Sbjct  310  LELKQEELNVDGIKQLYMDCDSEKHKF---------------------------EVLCEL  342

Query  489  IKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGD  548
              +L             +  +IIF   K D  NL    ++       +GH  +C  LHG 
Sbjct  343  YGLLT------------IGSSIIFVERK-DTANLLYAKMKA------EGH--ACSILHGG  381

Query  549  RKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEK------QNYVHR  602
             +  ER + ++ F++G  + LI T+V ARGIDI  V  V+N  LP +K        Y+HR
Sbjct  382  LETSERDRLIDDFREGRSKVLITTNVLARGIDIASVSMVVNYDLPTDKDGNADPSTYLHR  441

Query  603  IGRVGRAERMGLAISLV  619
            IGR GR  R+G++IS +
Sbjct  442  IGRTGRFGRVGVSISFI  458


 Score = 43.5 bits (101),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 19/64 (30%), Positives = 42/64 (66%), Gaps = 2/64 (3%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGG--DVLMAAETGSGKTGAFSIPV  60
            +F E+G+ PE+ + +  M +  P+ IQ +++PL++     +++  +++G+GKT AFS+ +
Sbjct  111  SFEELGLTPELLKGLYAMKFNKPSKIQEKALPLLISNPPRNMIGQSQSGTGKTAAFSLTM  170

Query  61   IQIV  64
            +  V
Sbjct  171  LSRV  174


>sp|Q9BUJ2|HNRL1_HUMAN Heterogeneous nuclear ribonucleoprotein 
U-like protein 1 OS=Homo sapiens OX=9606 GN=HNRNPUL1 PE=1 SV=2
Length=856

 Score = 112 bits (279),  Expect = 5e-24, Method: Compositional matrix adjust.
 Identities = 59/165 (36%), Positives = 93/165 (56%), Gaps = 23/165 (14%)

Query  97   DRGSAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCH-------------DQG  143
            DR S + +  +G          W G RA+ G+ +G+  +E+  +             D  
Sbjct  227  DRSSGYPLTIEGFAYL------WSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPH  280

Query  144  LCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGH-  202
            + R+GWS    S  LG + F +G+GGTGKKS N +F+NYG++F  +D IGC+ D + G+ 
Sbjct  281  VVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECGND  340

Query  203  --VKFSKNGKDLGLAFEIPPH-MKNQALFPACVLKNAELKFNFGE  244
              + F+KNGK +G+AF I    +  QAL+P  ++KN  ++FNFG+
Sbjct  341  VELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQ  385


>sp|Q6P9R1|DDX51_MOUSE ATP-dependent RNA helicase DDX51 OS=Mus 
musculus OX=10090 GN=Ddx51 PE=1 SV=1
Length=639

 Score = 111 bits (277),  Expect = 5e-24, Method: Compositional matrix adjust.
 Identities = 111/426 (26%), Positives = 187/426 (44%), Gaps = 84/426 (20%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA-ARDQLSVLENGVD-----  341
            +AL+V P++ELA+Q     K F  Y D   LR  L+ G  + A++Q S+++   D     
Sbjct  255  RALVVLPTKELAQQV---SKVFNIYTDTTPLRVALVTGQKSLAKEQESLVQKTADGFRCL  311

Query  342  --IVVGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR------------  386
              IVV TPGRL D +  T   +L Q+RFL++DEAD ++   +  ++ R            
Sbjct  312  ADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVVAAAFYSEGPT  371

Query  387  -----MHNQIPQVTSDGKR------LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK-GE  434
                 +    PQ  +          LQ ++ SATL + D +KL    ++ P     + G+
Sbjct  372  GSCALLQRTQPQALTAASTCVPQMPLQKLLFSATL-TQDPEKLQRLGLYQPRLFSTRLGQ  430

Query  435  DSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG  494
             S  DT       V+  + +    +G +H     V  + +++P                 
Sbjct  431  QSPKDTAE-----VDENSGKYTFPVGLTH---HYVPCRLSSKP-----------------  465

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
               +  +      +A+ F  ++ +   L  Y + Q  G        S         P +R
Sbjct  466  LIVLHLVLRMSCSRALCFTNSRENSHRL--YLLAQAFG------GVSVAEFSSRYGPGQR  517

Query  555  KQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGL  614
            K+ L++F++G ++ LI TD  ARGID+ GV  VIN   P   + YVHR+GR  RA + G 
Sbjct  518  KKILKQFEQGKIQLLISTDATARGIDVQGVELVINYDAPQYLRTYVHRVGRTARAGKTGQ  577

Query  615  AISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEM--QLLSEIEEHLNCTISQ  672
            A +L+   +E+ +  + S            E G   + ++E+  +LL  +       +SQ
Sbjct  578  AFTLLLKVQERKFLQMVS------------EAGVPELTHHEIPRKLLQPLVARYETALSQ  625

Query  673  VEPDIK  678
            +E  +K
Sbjct  626  LEKTVK  631


>sp|Q8SQM5|IF4A_ENCCU ATP-dependent RNA helicase eIF4A OS=Encephalitozoon 
cuniculi (strain GB-M1) OX=284813 GN=TIF1 PE=1 SV=1
Length=425

 Score = 108 bits (271),  Expect = 5e-24, Method: Compositional matrix adjust.
 Identities = 90/363 (25%), Positives = 166/363 (46%), Gaps = 52/363 (14%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            +  + L++  +RE+A Q   N  +F+        R  L+ GG         LE    IVV
Sbjct  105  DVTQILVLASTREIAAQ---NAARFEDLGCFMGARVALLSGGSPIAADKVALEKKPHIVV  161

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GTPGR++ +++  +L++  ++  V+DEAD +L  G+ + +  +  +I    ++   +Q+ 
Sbjct  162  GTPGRVEHMININELSMDNIKLFVIDEADEMLKAGFQEQVKSIFRRI----TNKDEVQIA  217

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT    +++ +SE+I+  P  +DL+  D     +    +                  
Sbjct  218  MFSATYDEEELR-VSEEILINPVIIDLRYNDQTLKGIRQYFI------------------  258

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
               D+  +   R G        E   + K        ++ ++ Q+I+F  +K D   +  
Sbjct  259  ---DLRKEPPFRKG-------REDYLLPKLVTLYDIFRKQRLGQSIVFINSKEDARIVYD  308

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
            + I+         H++ C  +  +    ER++ L RF+ G  R LI + + +RGIDI  +
Sbjct  309  WLIR---------HEWECELISAELTQAERERTLNRFRGGTGRCLISSGLLSRGIDIQNL  359

Query  585  PYVINVTLP--DEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTR  642
              V  + +P  + K  Y+HRIGR GR  R G+AI++V   + K    +     +  YNT 
Sbjct  360  SVVFCLDVPSFERKSTYIHRIGRSGRYGRKGIAINIVYEHELKNLKAI-----ERFYNTT  414

Query  643  LKE  645
            +KE
Sbjct  415  IKE  417


 Score = 40.8 bits (94),  Expect = 0.042, Method: Compositional matrix adjust.
 Identities = 18/61 (30%), Positives = 37/61 (61%), Gaps = 0/61 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            + + G+  ++ + +  + +  P+ IQ  +I  I+ G D+   A++G+GKTGAF++  +Q
Sbjct  39  TWEDYGLKEDLLKGIYSIGFETPSFIQKAAIQPIIDGRDIRAQAQSGTGKTGAFAVAALQ  98

Query  63  I  63
           I
Sbjct  99  I  99


>sp|Q18212|DX39B_CAEEL Spliceosome RNA helicase DDX39B homolog 
OS=Caenorhabditis elegans OX=6239 GN=hel-1 PE=1 SV=1
Length=425

 Score = 108 bits (270),  Expect = 6e-24, Method: Compositional matrix adjust.
 Identities = 92/331 (28%), Positives = 153/331 (46%), Gaps = 57/331 (17%)

Query  295  SRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGV-DIVVGTPGRLDDL  353
            +RELA Q     ++F KY+  P ++  +  GG+A +     L N    IVVGTPGR+  L
Sbjct  118  TRELAFQISKEYERFSKYL--PGVKVAVFFGGMAIKKDEERLANDCPHIVVGTPGRMLAL  175

Query  354  VSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSF  413
              +GKL L +V++ VLDE D ++  G +D + R   +I ++T   K  QV++ SATL   
Sbjct  176  ARSGKLKLDKVKYFVLDECDKMI--GDAD-MRRDVQEIVKMTPQQK--QVMMFSATLPK-  229

Query  414  DVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKD  473
            +++ + ++ M  P  V +  +D    T+H                L + +++  +  A+ 
Sbjct  230  ELRTVCKRFMQDPMEVYV--DDEAKLTLHG---------------LQQHYVKLKE--AEK  270

Query  474  NTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGP  533
            N R                     +  +   + +Q +IF +    C+ L Q   +Q    
Sbjct  271  NRR--------------------LLNLLDALEFNQVVIFVKAVKRCEALHQLLTEQN---  307

Query  534  DKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP  593
                  F  + +H      ER    + FK    R L+ TD+  RG+DI  V  V N  +P
Sbjct  308  ------FPSIAIHRQMAQEERLSRYQAFKDFQKRILVATDLFGRGMDIERVNIVFNYDMP  361

Query  594  DEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            ++  +Y+HR+ R GR    GLAI+ V+ E +
Sbjct  362  EDSDSYLHRVARAGRFGTKGLAITFVSDEND  392


 Score = 43.9 bits (102),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 0/61 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F +  + PEI +A+ +  +  P+++Q E IP  + G DV+  A++G GKT  F I  +
Sbjct  41   SGFRDFLLKPEILRAIGDCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTL  100

Query  62   Q  62
            Q
Sbjct  101  Q  101


>sp|A7TJM9|DRS1_VANPO ATP-dependent RNA helicase DRS1 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=DRS1 PE=3 SV=1
Length=752

 Score = 111 bits (277),  Expect = 6e-24, Method: Compositional matrix adjust.
 Identities = 90/335 (27%), Positives = 154/335 (46%), Gaps = 54/335 (16%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            + + +++ P+RELA Q  +  K+  KY+    L   L +GG+  R Q   L+   DIV+ 
Sbjct  302  STRVIVLTPTRELAIQIADVGKKIGKYVSG--LTFGLAVGGLNLRQQEQELKTRPDIVIA  359

Query  346  TPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            TPGR +D + ++   N+  V  LV+DEAD +L +G+ + +N +   +P       + Q +
Sbjct  360  TPGRFIDHVRNSSSFNVDSVEVLVMDEADRMLEEGFQEELNEILTLLPS------KRQTL  413

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT++S  +K L    +  P                 V + +NP   +   RL +  +
Sbjct  414  LFSATMNS-RIKSLISLSLRKP-----------------VRIMINP-PKQAAARLTQEFV  454

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
            R   +  +D+ +P      ++          Y +R +      + ++F   K     L  
Sbjct  455  R---IRKRDHLKPAL----LF----------YLIRKLDGTGQKRIVVFVARKEMAHKLRI  497

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
                 G              LHG     +R Q++  FK  +V  LICTD+A+RG+DI  +
Sbjct  498  ILGLLG---------MKVGELHGSLTQEQRLQSVNNFKSLEVPVLICTDLASRGLDIPKI  548

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
              VIN  +P   + Y+HR+GR  RA R G +++ V
Sbjct  549  EVVINFDMPKSYEIYLHRVGRTARAGREGRSVTFV  583


 Score = 51.2 bits (121),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 44/69 (64%), Gaps = 1/69 (1%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F+ + +   + + + ++ +  P+ IQ+ +IP+ L G D++  A TGSGKT AF IP+I
Sbjct  231  STFNSLTLSRPVLKGLSDLGYTKPSPIQSATIPIGLSGKDIIAGAVTGSGKTAAFMIPII  290

Query  62   Q-IVYETLK  69
            + ++Y+  K
Sbjct  291  ERLLYKPAK  299


>sp|Q8L4E9|RH36_ORYSJ DEAD-box ATP-dependent RNA helicase 36 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os07g0633500 PE=3 
SV=1
Length=501

 Score = 109 bits (273),  Expect = 7e-24, Method: Compositional matrix adjust.
 Identities = 99/369 (27%), Positives = 164/369 (44%), Gaps = 64/369 (17%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P    AL + P+RELA Q     +QF+       LR L  IGG  +  Q   L     +V
Sbjct  143  PYGVAALALAPTRELAAQL---AEQFRALGAPLGLRCLAAIGGFDSLGQAKGLARRPHVV  199

Query  344  VGTPGRLDDLVSTGKLNLSQV----RFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
            V TPGR+  L++    +L++V    +FLVLDEAD +L   + + +  +   +P      K
Sbjct  200  VATPGRIATLINDDP-DLAKVFARTKFLVLDEADRVLDINFEEDLRVIFGSLP------K  252

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
            + Q  + SAT+ S +++ L E   +   + +        DT+  + + V P    L+   
Sbjct  253  KRQTFLFSATI-SDNLRSLLELSGNNSYFFEAYEGFKTVDTLKQLYIHVPPDAKELY---  308

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
                                    ++          Y +  + E  +   I+F  T   C
Sbjct  309  ------------------------LF----------YLLSKMNEDNIRSVIVFVSTCRTC  334

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
              L+ + +++ G P         V LH  +    R   L  FK   V  L+ TDVA+RG+
Sbjct  335  QYLD-FLLEELGHP--------AVSLHSHKPQSRRLAALHNFKSSKVPVLLATDVASRGL  385

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE-KVWYHVCSSRGK--  636
            DI  V  VIN  +P   ++Y+HR+GR  RA R GL+IS + T+++ ++ + +    GK  
Sbjct  386  DIQTVDLVINYDVPRYPRDYIHRVGRTARATRGGLSISFITTQRDIRLLHEIEDVVGKQL  445

Query  637  GCYNTRLKE  645
            G Y+  +++
Sbjct  446  GAYDGEMRD  454


 Score = 52.4 bits (124),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (61%), Gaps = 0/61 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F+E+G+   +    + +   +PT +Q   IP  L G DVL  AETGSGKT AF++P++
Sbjct  77   STFAELGLSQWLVDVCDSLGMRVPTAVQRRCIPRALEGRDVLGIAETGSGKTAAFALPIL  136

Query  62   Q  62
             
Sbjct  137  H  137


>sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 OS=Caenorhabditis 
elegans OX=6239 GN=glh-1 PE=1 SV=3
Length=763

 Score = 111 bits (277),  Expect = 7e-24, Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 140/342 (41%), Gaps = 57/342 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+ +I+ P+RELA+Q  N   + +K+     +    + GG+A       +E G  I+VGT
Sbjct  419  PRCIILTPTRELADQIYN---EGRKFAYQTMMEIKPVYGGLAVGYNKGQIEKGATIIVGT  475

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
             GR+      G + L + RF VLDEAD ++ + G+                 G  ++ IV
Sbjct  476  VGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGF-----------------GTDIETIV  518

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
                  S   K+  + +M   T+         PD+V            R + R     I 
Sbjct  519  ---NYDSMPRKENRQTLMFSATF---------PDSVQEAA--------RAFLRENYVMIA  558

Query  466  TDDVHAKDNTR-------PGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
             D + A +            +   +   E + I    Y      E    + ++F   +  
Sbjct  559  IDKIGAANKCVLQEFERCERSEKKDKLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQRAM  618

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
             D L                Q   + +HG R+  ER + L +F+ G    LI T VA RG
Sbjct  619  ADTLASIL---------SSAQVPAITIHGAREQRERSEALRQFRNGSKPVLIATAVAERG  669

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            +DI GV +VIN  +PD   +Y+HRIGR GR    G A S ++
Sbjct  670  LDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNSGRATSFIS  711


 Score = 43.5 bits (101),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (59%), Gaps = 0/58 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            F+E  +   + + V    +   T IQ  ++PL+  G D++  A+TGSGKT AF +P++
Sbjct  343  FAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIM  400


>sp|Q5AJD0|DBP5_CANAL ATP-dependent RNA helicase DBP5 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP5 
PE=3 SV=2
Length=540

 Score = 109 bits (273),  Expect = 8e-24, Method: Compositional matrix adjust.
 Identities = 104/354 (29%), Positives = 153/354 (43%), Gaps = 97/354 (27%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+ L + P+RELA QTL  I    K+ +   +   L++     R   SV      ++VGT
Sbjct  221  PQCLCLSPTRELARQTLEVITTMGKFTN---ITTQLVVPNAIPRGS-SV---NAQVLVGT  273

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            PG   DL+   +LNLS+++  VLDEAD +L +QG  D   R+   +P      + +Q+++
Sbjct  274  PGIAIDLIRRRQLNLSKMKVFVLDEADNMLEAQGLGDQAIRVKKALP------RGVQLVL  327

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT               FPT V    E  VPD                          
Sbjct  328  FSAT---------------FPTEVREYAERLVPD--------------------------  346

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKI--LKGEYAVRAIKEHKMD------------QAII  511
                         ANS E+  E + +  +K  Y     ++HK +             +II
Sbjct  347  -------------ANSLELKQEELNVDGIKQLYMDCRSEQHKFEVLCELYGLLTIGSSII  393

Query  512  FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLIC  571
            F   K   D L        G   K+GH  S   LHG     +R + ++ F++G  + LI 
Sbjct  394  FVEKKETADVLY-------GKMKKEGHTVSV--LHGGLDNTDRDRLIDDFREGRSKVLIT  444

Query  572  TDVAARGIDIHGVPYVINVTLPDEK------QNYVHRIGRVGRAERMGLAISLV  619
            T+V ARGIDI  V  V+N  +P +K        Y+HRIGR GR  R+G++IS +
Sbjct  445  TNVLARGIDIASVSMVVNYDMPTDKYGKPDPSTYLHRIGRTGRFGRVGVSISFI  498


 Score = 46.6 bits (109),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 23/72 (32%), Positives = 46/72 (64%), Gaps = 2/72 (3%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGG--DVLMAAETGSGKTGAFSIPV  60
            +F E+G+ PE+ + +  M +  P+ IQ +++PL+L     +++  +++G+GKT AFS+ +
Sbjct  151  SFEELGLSPELLKGLYAMKFNKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFSLTM  210

Query  61   IQIVYETLKDQQ  72
            +  V  T+K  Q
Sbjct  211  LSRVDPTIKMPQ  222


>sp|O13792|SUB2_SCHPO ATP-dependent RNA helicase uap56 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=uap56 
PE=1 SV=3
Length=434

 Score = 108 bits (270),  Expect = 8e-24, Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 154/339 (45%), Gaps = 59/339 (17%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN---GVDIVVG  345
             L++  +RELA Q  N   +F KY+  P +R  +  GG+  +  +   ++      IVV 
Sbjct  122  VLVLCHTRELAFQIKNEYARFSKYL--PDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVA  179

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGRL+ LV    L ++ V+  VLDE D LL    S  + R   ++ + T   K  QV++
Sbjct  180  TPGRLNALVREKILKVNSVKHFVLDECDKLLE---SVDMRRDIQEVFRATPPQK--QVMM  234

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SATL S +++ + +K M  P  +++  +D    T+H                L + +++
Sbjct  235  FSATL-SNEIRPICKKFMQNP--LEIYVDDETKLTLHG---------------LQQHYVK  276

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
             ++           +S E                       +Q +IF ++    + L++ 
Sbjct  277  LEEKAKNRKINDLLDSLEF----------------------NQVVIFVKSVSRANELDRL  314

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
                      +   F  +C+HG     ER +  + FK  D R  + TDV  RGIDI  V 
Sbjct  315  L---------RECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVN  365

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
             VIN  +PD   +Y+HR+GR GR    GLAI+  ++E++
Sbjct  366  IVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEED  404


 Score = 40.8 bits (94),  Expect = 0.037, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 34/59 (58%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +  + PE+ +A+ +  +  P+++Q   IP  + G DVL  A++G GKT  F +  +Q
Sbjct  53   FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQ  111


>sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 OS=Caenorhabditis 
elegans OX=6239 GN=glh-2 PE=1 SV=1
Length=974

 Score = 111 bits (277),  Expect = 8e-24, Method: Compositional matrix adjust.
 Identities = 91/339 (27%), Positives = 149/339 (44%), Gaps = 47/339 (14%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+ +I+ P+REL +Q  N  ++F  Y    ++R   + GG+A       +E G  I+VGT
Sbjct  630  PRCIILTPTRELTDQIYNEGRKFA-YQTMMEIRP--VYGGLAVGYNKGQIEKGATIIVGT  686

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHN--QIPQVTSDGKRLQV  403
             GR+      G + L + RF VLDEAD ++ + G+   I+ + N   +P+     +  Q 
Sbjct  687  VGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIDTIVNYESMPKK----ENRQT  742

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            ++ SAT               FP  V     + + +   ++++ ++ K     + + +  
Sbjct  743  LMFSAT---------------FPDSVQEAARNHLKEG--YIMLAID-KIGAANKCVLQEF  784

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
             + D    KD             E + I    Y      E    + I+F   +   D L 
Sbjct  785  EKCDRSEKKD----------KLLEILGIDIDSYTTEKNSEVYTKKTIVFVSQRAMADTLA  834

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
                           Q   + +HG R+  ER + L +F+ G    LI T VA RG+DI G
Sbjct  835  SILSSA---------QVPAITIHGAREQRERSEALRQFRNGSKPVLIATAVAERGLDIKG  885

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            V +VIN  +PD   +Y+HRIGR GR    G A S ++ +
Sbjct  886  VDHVINYDMPDNIDDYIHRIGRTGRVGNAGRATSFISED  924


 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 22/58 (38%), Positives = 34/58 (59%), Gaps = 0/58 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            FSE  +   + + V    +   T IQ  ++PLI  G D++  A+TGSGKT AF +P++
Sbjct  554  FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIM  611


>sp|A6QRQ7|RRP3_AJECN ATP-dependent rRNA helicase RRP3 OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=RRP3 PE=3 
SV=1
Length=485

 Score = 108 bits (271),  Expect = 9e-24, Method: Compositional matrix adjust.
 Identities = 99/358 (28%), Positives = 152/358 (42%), Gaps = 62/358 (17%)

Query  283  LPNAPKAL---IVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
            L N P++L   I+ P+RELA Q     +     I    +R  +I+GG+    Q   L   
Sbjct  121  LMNKPQSLFGLILAPTRELACQISEAFEALGSLIS---VRCAVIVGGMDMVSQAISLGKK  177

Query  340  VDIVVGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
              I+V TPGRL D L +T   +L  +++LV+DEAD LL   +   ++++   +P      
Sbjct  178  PHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLP------  231

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER  458
            +  +  + SAT+ S  V+ L    +  P  V      S+    +  V  +      L   
Sbjct  232  RERRTYLFSATMSS-KVESLQRASLSNPLRV------SISSNKYQTVATL------LQSY  278

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
            L   H +  D+                          Y V  + E+    AI+F RT  +
Sbjct  279  LFIPH-KYKDI--------------------------YLVYLLNEYAGQSAIVFTRTVNE  311

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
               L       G         F  + LHG      R   L +F+      L+ TDVAARG
Sbjct  312  TQRLAILLRALG---------FGSIPLHGQLSQSSRLGALSKFRSRSRDILVATDVAARG  362

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGK  636
            +DI  V  V+N  LP + + Y+HR+GR  RA + G A S+V     +VW  + ++ GK
Sbjct  363  LDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYDIEVWLRIENALGK  420


 Score = 65.9 bits (159),  Expect = 7e-10, Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 44/60 (73%), Gaps = 0/60 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F ++G++  + +A E + +  PT IQAESIPL L G D++  AETGSGKT AF++P++Q
Sbjct  60   SFKDLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQ  119


>sp|Q0UN57|PRP5_PHANO Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 
/ FGSC 10173) OX=321614 GN=PRP5 PE=3 SV=2
Length=1184

 Score = 111 bits (277),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 97/360 (27%), Positives = 162/360 (45%), Gaps = 69/360 (19%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG-VDIV  343
            + P  LI+ P+REL+ Q +N +K F   ++   +      GG    DQ+++++ G + I+
Sbjct  616  DGPIGLILAPTRELSLQIVNELKPF---LNASGITIKCAYGGQPISDQIAMIKRGGIHIL  672

Query  344  VGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR  400
              T GRL DL+ +     L+  ++ ++VLDEAD +   G+   + ++      + S    
Sbjct  673  CATAGRLIDLLQSNSGRVLSFRRITYVVLDEADRMFDMGFEPQVMKI------LASIRPD  726

Query  401  LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSV-PDTVHHVVVPVNP----KTDRL  455
             Q I+ SAT     +  L+ K +  P  V + G   V P+   H+ + V P    K  +L
Sbjct  727  RQTILFSATFPKT-MAALARKALDKPAEVIIGGRSKVAPEITQHITI-VPPSYEKKIAKL  784

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFC-R  514
               LG++   +DD +A                                    Q +IF  R
Sbjct  785  LHHLGQTF--SDDENA------------------------------------QVLIFTER  806

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
             +   D L + F         K   F+   +HG +   +R + +  FK+G +  LI T V
Sbjct  807  QETAEDLLSKLF---------KAKYFAVNTIHGAKDQTDRNEAINEFKQGLLNILIATSV  857

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE-KEKVWYHVCSS  633
            AARG+D+ G+  V N   P   ++YVHR GR GRA   GLA++L+    +E+   H+  +
Sbjct  858  AARGLDVPGLALVYNFDCPTHLEDYVHRCGRTGRAGNKGLAVTLIENPGQERFAVHIVKA  917


 Score = 50.4 bits (119),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 0/63 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            +++MG++ +       + +  PT IQA++IP+   G D++  A+TGSGKT AF IP+I+ 
Sbjct  546  WAQMGLLQQTMDVFTRVGYARPTAIQAQAIPIAESGRDLIGVAKTGSGKTLAFGIPMIRH  605

Query  64   VYE  66
            V +
Sbjct  606  VLD  608


>sp|Q1E1N5|RRP3_COCIM ATP-dependent rRNA helicase RRP3 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=RRP3 PE=3 SV=1
Length=474

 Score = 108 bits (271),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 145/354 (41%), Gaps = 59/354 (17%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P +   L++ P+RELA Q     +     I    +R  +I+GG+    Q   L     I+
Sbjct  114  PQSMFGLVLAPTRELAYQISQQFEALGSLIS---VRCAVIVGGMDMVSQAIALGKKPHII  170

Query  344  VGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            V TPGRL D L +T   +L  +++LV+DEAD LL   +   ++++   +P      K  +
Sbjct  171  VATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLP------KERR  224

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
              + SAT+ S  V+ L    +  P  V      SV    +  V  +      L   L   
Sbjct  225  TYLFSATMSS-KVESLQRASLSNPLRV------SVSSNKYQTVSTL------LQNCLIIP  271

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
            H   D                            Y +  + E      IIF RT  +   L
Sbjct  272  HKHKDI---------------------------YLIYLLNEFPGQSVIIFTRTVNETQRL  304

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
                   G         F  + LHG      R   L +F+      L+ TDVAARG+DI 
Sbjct  305  AILLRALG---------FGAIPLHGQLSQSARLGALGKFRSRSRNILVATDVAARGLDIP  355

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGK  636
             V  V+N  LP + + Y+HR+GR  RA + G A SLV     ++W  + ++ GK
Sbjct  356  SVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLVTQYDVEIWQRIEAALGK  409


 Score = 65.9 bits (159),  Expect = 7e-10, Method: Compositional matrix adjust.
 Identities = 28/64 (44%), Positives = 46/64 (72%), Gaps = 0/64 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F ++G++  + +A + + +  PT IQAESIPL L G D++  AETGSGKT AF++P++Q
Sbjct  49   SFKDLGIIDSLCEACDSLGYKAPTQIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQ  108

Query  63   IVYE  66
             + +
Sbjct  109  ALMD  112


>sp|Q7L014|DDX46_HUMAN Probable ATP-dependent RNA helicase DDX46 
OS=Homo sapiens OX=9606 GN=DDX46 PE=1 SV=2
Length=1031

 Score = 110 bits (276),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 92/342 (27%), Positives = 155/342 (45%), Gaps = 61/342 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P A+I+ P+RELA Q     K+F K +    LR + + GG    +Q++ L+ G +I+V T
Sbjct  446  PIAVIMTPTRELALQITKECKKFSKTLG---LRVVCVYGGTGISEQIAELKRGAEIIVCT  502

Query  347  PGRLDDLVS--TGKL-NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            PGR+ D+++  +G++ NL +V ++VLDEAD +   G+   + R+   +  V  D    Q 
Sbjct  503  PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRI---VDNVRPD---RQT  556

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            ++ SAT     ++ L+ +I+  P  V + G   V   V   V+ +  +   L       H
Sbjct  557  VMFSATFPRA-MEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGH  615

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
             +                 E  S  I + K E+A   +K+          R    C    
Sbjct  616  YQ-----------------ESGSVIIFVDKQEHADGLLKD--------LMRASYPC----  646

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
                               + LHG    ++R   +  FK G  + L+ T VAARG+D+  
Sbjct  647  -------------------MSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKH  687

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  V+N + P+  ++YVHR GR GRA   G A + +  ++ +
Sbjct  688  LILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQAR  729


 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 21/62 (34%), Positives = 41/62 (66%), Gaps = 0/62 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + ++ + G+  +I  ++++  +  PT IQ ++IP I+ G D++  A+TGSGKT AF +P+
Sbjct  371  IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM  430

Query  61   IQ  62
             +
Sbjct  431  FR  432


>sp|A7TJK8|PRP5_VANPO Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Vanderwaltozyma polyspora (strain ATCC 22028 
/ DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 
/ UCD 57-17) OX=436907 GN=PRP5 PE=3 SV=1
Length=872

 Score = 110 bits (275),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 108/377 (29%), Positives = 169/377 (45%), Gaps = 55/377 (15%)

Query  255  FVALSKAPDG----YIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFK  310
             + +SK   G    YI+       AQ T +K     P  LI+ P+RELA Q    +++F 
Sbjct  317  LIGISKTGSGKTISYILPMLRQIKAQRTLSKN-ETGPLGLILAPTRELALQINEEVEKFT  375

Query  311  KYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVS--TGKL-NLSQVRFL  367
            K   +  +R +   GG   + Q++ L+ GV+IVV TPGRL D+++  +GKL +  ++ F+
Sbjct  376  K--QDRSIRTICCTGGSEMKKQINDLKRGVEIVVATPGRLIDILTLNSGKLISTKRITFV  433

Query  368  VLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL----QVIVCSATLHSFDVKKLSEKIM  423
            V+DEAD L   G+           PQ+T   K +    Q ++ SAT  +  ++  + +I+
Sbjct  434  VMDEADRLFDMGFE----------PQITQIMKTVRPDKQCVLFSATFPN-KLRSFAARIL  482

Query  424  HFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPE  483
              P  V +   + V + V+      + + D+ + RL    +   D   K N    +NS E
Sbjct  483  TDPLTVTINSNNLVNENVNQSFYIEDNENDK-FNRL----VNILDGFYKVNKNITSNSEE  537

Query  484  MWSEAIKILKGEYAVRAIKEHKMDQAII-FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSC  542
                           R I E   D+ II F  ++  CD L       G  P         
Sbjct  538  ---------------REIDEEVSDKKIIIFVSSQQFCDLLYSKLENFGYFP---------  573

Query  543  VCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHR  602
              +H  +   ER  NLE+FK      L+CT+V +RG+++  V  VI          YVH 
Sbjct  574  YTIHAGKPYQERVMNLEKFKTTTNSILLCTEVLSRGLNVPEVSLVIIYNAAKTFAQYVHT  633

Query  603  IGRVGRAERMGLAISLV  619
             GR  R    G AI+L+
Sbjct  634  TGRTARGTHKGDAITLL  650


 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 20/65 (31%), Positives = 45/65 (69%), Gaps = 1/65 (2%)

Query  1    MAAFSEMGVMPEIAQAV-EEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
            +  +S++G+  +I   + +E+ +  PT IQ+++IP I+ G D++  ++TGSGKT ++ +P
Sbjct  275  ITRWSQLGLPTDIMNLITKELKYDEPTAIQSQAIPAIMSGRDLIGISKTGSGKTISYILP  334

Query  60   VIQIV  64
            +++ +
Sbjct  335  MLRQI  339


>sp|Q62780|DDX46_RAT Probable ATP-dependent RNA helicase DDX46 
OS=Rattus norvegicus OX=10116 GN=Ddx46 PE=1 SV=1
Length=1032

 Score = 110 bits (276),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 92/342 (27%), Positives = 155/342 (45%), Gaps = 61/342 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P A+I+ P+RELA Q     K+F K +    LR + + GG    +Q++ L+ G +I+V T
Sbjct  446  PIAVIMTPTRELALQITKECKKFSKTLG---LRVVCVYGGTGISEQIAELKRGAEIIVCT  502

Query  347  PGRLDDLVS--TGKL-NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            PGR+ D+++  +G++ NL +V ++VLDEAD +   G+   + R+   +  V  D    Q 
Sbjct  503  PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRI---VDNVRPD---RQT  556

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            ++ SAT     ++ L+ +I+  P  V + G   V   V   V+ +  +   L       H
Sbjct  557  VMFSATFPRA-MEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGH  615

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
             +                 E  S  I + K E+A   +K+          R    C    
Sbjct  616  YQ-----------------ESGSVIIFVDKQEHADGLLKD--------LMRASYPC----  646

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
                               + LHG    ++R   +  FK G  + L+ T VAARG+D+  
Sbjct  647  -------------------MSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKH  687

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  V+N + P+  ++YVHR GR GRA   G A + +  ++ +
Sbjct  688  LILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQAR  729


 Score = 45.1 bits (105),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 37/55 (67%), Gaps = 0/55 (0%)

Query  8    GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            G+  +I  ++++  +  PT IQ ++IP I+ G D++  A+TGSGKT AF +P+ +
Sbjct  378  GISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFR  432


>sp|A6SFV4|DBP8_BOTFB ATP-dependent RNA helicase dbp8 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=dbp8 PE=3 SV=1
Length=545

 Score = 109 bits (272),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 97/337 (29%), Positives = 142/337 (42%), Gaps = 54/337 (16%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            AL++ P+RELA Q     +QFK       L+ +LI GG   R Q + L     IV+ TPG
Sbjct  187  ALVLTPTRELALQIY---EQFKAISSPQSLKAVLITGGSDMRPQATALAQRPHIVIATPG  243

Query  349  RLDDLVSTGKLN----LSQVRFLVLDEADGLLSQG-YSDFINRMHNQIPQVTSDGKRLQV  403
            RL D + T   +    L +VR +VLDEAD LL+ G     +  +   +  +    KR Q 
Sbjct  244  RLADHIRTSGEDTIGALRRVRMVVLDEADRLLASGSVGSMLPDVEECLSILPPPAKR-QT  302

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            ++ +AT+               P    LK     P  +   V  V+ +   +   L + H
Sbjct  303  LLFTATV--------------TPEVRALKDMPRTPGKLPVFVCEVDTQALAIPPSLNQMH  348

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAI-IFCRTKIDCDNL  522
            ++    H +           M+               + E  + ++I IFC      D L
Sbjct  349  LQVPVTHREHYL-------HMF--------------LLTEKNLPKSIVIFCNRTATADYL  387

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
                         +        LH      +R  NL RF+    R L+ TDVAARG+DI 
Sbjct  388  THLL---------RLLDHRVTALHSKLPQRQRIDNLGRFRASAARILVATDVAARGLDIP  438

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
             V  VIN  +P +  +Y+HR+GR  RA R G A+S V
Sbjct  439  EVGLVINYDIPRDPDDYIHRVGRTARAGRKGEAVSFV  475


 Score = 47.0 bits (110),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 24/59 (41%), Positives = 35/59 (59%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F+ + V P +  ++  M    PT IQ   IP IL G D +  + TGSGKT AF++P++Q
Sbjct  118  FAALNVKPWLVGSLGSMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPILQ  176


>sp|Q0UK12|RRP3_PHANO ATP-dependent rRNA helicase RRP3 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=RRP3 PE=3 SV=2
Length=546

 Score = 109 bits (272),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 98/364 (27%), Positives = 155/364 (43%), Gaps = 58/364 (16%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P A   LI+ P+RELA Q    +      I+   ++   ++GG+    Q   L     I+
Sbjct  181  PQAYFGLIMAPTRELAYQISQQVDALGSIIN---VKCATLVGGMDMVPQAIALSKRPHII  237

Query  344  VGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            V +PGRL D L +T   +L  +++LVLDEAD LL   + D ++++   +P+   D +   
Sbjct  238  VASPGRLLDHLENTKGFSLKHLKYLVLDEADRLLDLDFGDSLDKIFKVLPR---DDR--H  292

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
              + SAT+ S  V+ L    +  P  V      S+  + H VV             L +S
Sbjct  293  TYLFSATMSS-KVESLQRAALKNPVRV------SISSSSHQVV-----------STLLQS  334

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
            ++                 P  +       K  Y +  + ++     I+F RT  +   L
Sbjct  335  YMLI---------------PHKY-------KDLYLIHLLNDNIGHATILFTRTVNETQRL  372

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
                   G         F  + LHG      R   L +FK      L+ TDVAARG+DI 
Sbjct  373  AVLLRTLG---------FQALPLHGQLSQSNRLGALNKFKAKARDILVATDVAARGLDIP  423

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTR  642
             V  V+N  LP + + YVHR+GR  RA + G A+S V     +++  +  + GK     +
Sbjct  424  SVDLVVNFDLPHDSETYVHRVGRTARAGKSGKAVSFVTQYDLEIFQRIEHALGKQVPEEK  483

Query  643  LKED  646
            +  D
Sbjct  484  VSRD  487


 Score = 63.9 bits (154),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 42/63 (67%), Gaps = 0/63 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+++GV  E+  A E + +   T IQ ESIPL L G D++  AETGSGKT AF +P++Q 
Sbjct  117  FADLGVREELCDACENLGYKTATPIQTESIPLALAGKDIIGLAETGSGKTAAFVLPILQA  176

Query  64   VYE  66
            + +
Sbjct  177  LLD  179


>sp|A3AVH5|RH13_ORYSJ DEAD-box ATP-dependent RNA helicase 13 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os04g0510400 PE=2 
SV=2
Length=832

 Score = 110 bits (275),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 95/358 (27%), Positives = 161/358 (45%), Gaps = 24/358 (7%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+RELA+Q  +++K+  K++   +++ + I+GG++   Q  +L+   +IVVGTP
Sbjct  289  RALILTPTRELAKQVCDHLKEAAKFL---RIQVVPIVGGLSMEKQERLLKRKPEIVVGTP  345

Query  348  GRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT-SDGKRLQV  403
            GRL +L+STG    + L  + F VLDEAD ++ +G+   +  +   +P    SD + +  
Sbjct  346  GRLWELMSTGNQHLIKLHSLSFFVLDEADRMIERGHFHELQSIIEMLPVTNGSDEQTVGT  405

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTD-RLWERLGKS  462
                 T+    +KK   +   F   + L            V    +  TD    E L K 
Sbjct  406  TPSCETVPILQIKK--RQTFVFSATLALSANFRKKLKRGLVTAKASASTDLSSIEALSKQ  463

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKIL----KGEYAVRAIKEHKMDQAIIFCRTKID  518
                 +    D T+  +  PE   E+        K  Y    +  H   + IIFC +   
Sbjct  464  ARMKPNAEIVDLTK-ASILPEKLEESFIECSDDDKDAYLYYILSVHGQGRTIIFCTSIAA  522

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
              +L       G          + +  H   +   R + ++RF++ +   L+ TD  ARG
Sbjct  523  LRHLSSILRVLG---------INVLTNHAQMQQRARMKAVDRFRESENSILVATDGFARG  573

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGK  636
            +D   V  VI+  LP     Y+HR GR  R    G +I+L++   +  +Y +C S  K
Sbjct  574  MDFDDVRTVIHYQLPHSTDVYIHRSGRTARKSMAGCSIALISPADKAKFYSLCKSLSK  631


 Score = 47.8 bits (112),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 27/65 (42%), Positives = 38/65 (58%), Gaps = 1/65 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLIL-GGGDVLMAAETGSGKTGAFSIPVI  61
            A+ E+ + P +  AV  + +  PT IQ    P     G DV+ AAETGSGKT AF +P++
Sbjct  199  AWRELRLHPLLITAVRRLGFKEPTPIQKACFPAAAHQGKDVIGAAETGSGKTLAFGLPIL  258

Query  62   QIVYE  66
            Q + E
Sbjct  259  QRLLE  263


>sp|A2XVF7|RH13_ORYSI DEAD-box ATP-dependent RNA helicase 13 OS=Oryza 
sativa subsp. indica OX=39946 GN=OsI_016050 PE=3 SV=2
Length=832

 Score = 110 bits (275),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 95/358 (27%), Positives = 161/358 (45%), Gaps = 24/358 (7%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+RELA+Q  +++K+  K++   +++ + I+GG++   Q  +L+   +IVVGTP
Sbjct  289  RALILTPTRELAKQVCDHLKEAAKFL---RIQVVPIVGGLSMEKQERLLKRKPEIVVGTP  345

Query  348  GRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT-SDGKRLQV  403
            GRL +L+STG    + L  + F VLDEAD ++ +G+   +  +   +P    SD + +  
Sbjct  346  GRLWELMSTGNQHLIKLHSLSFFVLDEADRMIERGHFHELQSIIEMLPVTNGSDEQTVGT  405

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTD-RLWERLGKS  462
                 T+    +KK   +   F   + L            V    +  TD    E L K 
Sbjct  406  TPSCETVPILQIKK--RQTFVFSATLALSANFRKKLKRGLVTAKASASTDLSSIEALSKQ  463

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKIL----KGEYAVRAIKEHKMDQAIIFCRTKID  518
                 +    D T+  +  PE   E+        K  Y    +  H   + IIFC +   
Sbjct  464  ARMKPNAEIVDLTK-ASILPEKLEESFIECSDDDKDAYLYYILSVHGQGRTIIFCTSIAA  522

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
              +L       G          + +  H   +   R + ++RF++ +   L+ TD  ARG
Sbjct  523  LRHLSSILRVLG---------INVLTNHAQMQQRARMKAVDRFRESENSILVATDGFARG  573

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGK  636
            +D   V  VI+  LP     Y+HR GR  R    G +I+L++   +  +Y +C S  K
Sbjct  574  MDFDDVRTVIHYQLPHSTDVYIHRSGRTARKSMAGCSIALISPADKAKFYSLCKSLSK  631


 Score = 47.8 bits (112),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 27/65 (42%), Positives = 38/65 (58%), Gaps = 1/65 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLIL-GGGDVLMAAETGSGKTGAFSIPVI  61
            A+ E+ + P +  AV  + +  PT IQ    P     G DV+ AAETGSGKT AF +P++
Sbjct  199  AWRELRLHPLLITAVRRLGFKEPTPIQKACFPAAAHQGKDVIGAAETGSGKTLAFGLPIL  258

Query  62   QIVYE  66
            Q + E
Sbjct  259  QRLLE  263


>sp|Q569Z5|DDX46_MOUSE Probable ATP-dependent RNA helicase DDX46 
OS=Mus musculus OX=10090 GN=Ddx46 PE=1 SV=2
Length=1032

 Score = 110 bits (275),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 92/342 (27%), Positives = 155/342 (45%), Gaps = 61/342 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P A+I+ P+RELA Q     K+F K +    LR + + GG    +Q++ L+ G +I+V T
Sbjct  446  PIAVIMTPTRELALQITKECKKFSKTLG---LRVVCVYGGTGISEQIAELKRGAEIIVCT  502

Query  347  PGRLDDLVS--TGKL-NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            PGR+ D+++  +G++ NL +V ++VLDEAD +   G+   + R+   +  V  D    Q 
Sbjct  503  PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRI---VDNVRPD---RQT  556

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            ++ SAT     ++ L+ +I+  P  V + G   V   V   V+ +  +   L       H
Sbjct  557  VMFSATFPRA-MEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGH  615

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
             +                 E  S  I + K E+A   +K+          R    C    
Sbjct  616  YQ-----------------ESGSVIIFVDKQEHADGLLKD--------LMRASYPC----  646

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
                               + LHG    ++R   +  FK G  + L+ T VAARG+D+  
Sbjct  647  -------------------MSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKH  687

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  V+N + P+  ++YVHR GR GRA   G A + +  ++ +
Sbjct  688  LILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQAR  729


 Score = 45.1 bits (105),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 37/55 (67%), Gaps = 0/55 (0%)

Query  8    GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            G+  +I  ++++  +  PT IQ ++IP I+ G D++  A+TGSGKT AF +P+ +
Sbjct  378  GISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFR  432


>sp|A5DBI5|DBP5_PICGU ATP-dependent RNA helicase DBP5 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP5 PE=3 
SV=1
Length=482

 Score = 108 bits (270),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 97/347 (28%), Positives = 157/347 (45%), Gaps = 70/347 (20%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            PN  + + + P+RELA QTL  I    K+    K+   L++     ++Q +       IV
Sbjct  161  PNT-QCICLSPTRELARQTLEVITTMGKFT---KVTTQLVVPQAMEKNQGT----QAHIV  212

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLS-QGYSDFINRMHNQIPQVTSDGKRLQ  402
            VGTPG L D++    L   +V+  VLDEAD +L  QG +    R+   +P         Q
Sbjct  213  VGTPGTLLDMIKRKLLRTGKVKVFVLDEADNMLDGQGLAAQCIRVKKVLPT------SCQ  266

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
            +++ SAT  + +V+K +EK +     ++LK E+   D +  + +                
Sbjct  267  LVLFSATFPT-EVRKYAEKFVPNANSLELKQEELNVDAIKQLYM----------------  309

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
                             +S +  +E +  L G   + +        +IIF +TK   + L
Sbjct  310  ---------------DCDSEKHKAEVLSELYGLLTIGS--------SIIFVKTKATANYL  346

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
                  +G          +C  LH D    ER + ++ F++G  + LI T+V ARGIDI 
Sbjct  347  YAKMKSEG---------HACSILHSDLDNSERDKLIDDFREGRSKVLITTNVLARGIDIA  397

Query  583  GVPYVINVTLPDEKQN------YVHRIGRVGRAERMGLAISLVATEK  623
             V  V+N  +P +K +      Y+HRIGR GR  R+G+A+S V  +K
Sbjct  398  SVSMVVNYDIPVDKDDKPDPSTYLHRIGRTGRFGRVGVAVSFVHDKK  444


 Score = 43.5 bits (101),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 19/64 (30%), Positives = 42/64 (66%), Gaps = 2/64 (3%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSIPV  60
            +F E+G+ PE+ + +  M +  P+ IQ +++PL++     +++  +++G+GKT AFS+ +
Sbjct  93   SFEELGLSPELLKGLYAMKFNKPSKIQEKALPLLISNPPKNMIGQSQSGTGKTAAFSLTM  152

Query  61   IQIV  64
            +  V
Sbjct  153  LSRV  156


>sp|Q75C39|DBP5_EREGS ATP-dependent RNA helicase DBP5 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DBP5 PE=3 SV=2
Length=466

 Score = 108 bits (269),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 109/366 (30%), Positives = 155/366 (42%), Gaps = 111/366 (30%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            A +A+ + PSRELA QTL  I++  K+    K+   LI+     +++         I+VG
Sbjct  147  ATQAICLAPSRELARQTLEVIQEMGKFT---KIASQLIVPDSYEKNKAI----NAHIIVG  199

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLS-QGYSDFINRMHNQIPQVTSDGKRLQVI  404
            TPG + DL+    + L +V+  VLDEAD +L  QG  D   R+   +P+ T      Q++
Sbjct  200  TPGTVLDLMRRKMIQLGKVKTFVLDEADNMLDKQGLGDQCIRVKKFLPKDT------QLV  253

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT   FD                    DSV +    VV                   
Sbjct  254  LFSAT---FD--------------------DSVREYARRVV-------------------  271

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD-----------------  507
                        P ANS E+        + E  V AIK+  MD                 
Sbjct  272  ------------PNANSLELQ-------RNEVNVSAIKQLFMDCNDERHKFTVLCDLYGL  312

Query  508  ----QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
                 +IIF +TK   + L            ++GHQ S   LHGD +  +R + +  F++
Sbjct  313  LTIGSSIIFVQTKQTANMLYTEL-------KREGHQVSI--LHGDLQSADRDRLIGDFRE  363

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLP------DEKQNYVHRIGRVGRAERMGLAIS  617
            G  + LI T+V ARGIDI  V  V+N  LP       +   YVHRIGR GR  R G+AIS
Sbjct  364  GRSKVLITTNVLARGIDIPTVSMVVNYDLPMTANGQPDPSTYVHRIGRTGRFGRTGVAIS  423

Query  618  LVATEK  623
             +  +K
Sbjct  424  FIHDKK  429


 Score = 44.7 bits (104),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 41/64 (64%), Gaps = 2/64 (3%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGG--DVLMAAETGSGKTGAFSIPV  60
            +F E+G+ PE+ + +  M +  P+ IQ  ++PL+L     +++  +++G+GKT AFS+ +
Sbjct  78   SFEELGLAPELLKGLYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM  137

Query  61   IQIV  64
            +  V
Sbjct  138  LSRV  141


>sp|Q9QY16|DDX25_RAT ATP-dependent RNA helicase DDX25 OS=Rattus 
norvegicus OX=10116 GN=Ddx25 PE=1 SV=2
Length=483

 Score = 108 bits (270),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 116/441 (26%), Positives = 188/441 (43%), Gaps = 117/441 (27%)

Query  256  VALSKAPDGYIVKSQHSGN--------AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIK  307
            + L+  P   I +SQ SG         A + +   L   P+ L + P+ ELA QT   ++
Sbjct  130  MMLAHPPQNLIAQSQ-SGTGKTAAFVLAMLNRVNALELFPQCLCLAPTYELALQTGRVVE  188

Query  308  QFKKYIDNPKLRELLIIGGVAARDQLSVLENGVD----IVVGTPGRLDDLVSTGKL-NLS  362
            +  K+  + ++  +  I G       + +  G D    IV+GTPG + D     KL +L+
Sbjct  189  RMGKFCVDVEV--MYAIRG-------NRIPRGTDVTKQIVIGTPGTVLDWCFKRKLIDLT  239

Query  363  QVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEK  421
            ++R  VLDEAD ++ +QG+SD   R+   +P         Q+++ SAT     V + +E+
Sbjct  240  KIRVFVLDEADVMIDTQGFSDQSIRIQRALP------SECQMLLFSATFED-SVWQFAER  292

Query  422  IMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANS  481
            I+  P  + L+ E+   + +    V        L E       R D   A  N   G   
Sbjct  293  IIPDPNVIKLRKEELTLNNIRQYYV--------LCEN------RKDKYQALCNIYGGIT-  337

Query  482  PEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFS  541
                                    + QAIIFC+T+ +   L    +Q G       HQ S
Sbjct  338  ------------------------IGQAIIFCQTRRNAKWLTVEMMQDG-------HQVS  366

Query  542  CVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP------DE  595
               L G+    +R   ++RF+ G  + LI T+V ARGID+  V  V+N  LP       +
Sbjct  367  L--LSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVNQSEEPD  424

Query  596  KQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNE  655
             + Y+HRIGR GR  + GLA +++  +K                                
Sbjct  425  YETYLHRIGRTGRFGKKGLAFNMIEVDK--------------------------------  452

Query  656  MQLLSEIEEHLNCTISQVEPD  676
            + LL +I++H N +I Q++P+
Sbjct  453  LPLLMKIQDHFNSSIKQLDPE  473


>sp|A7TTT5|DBP2_VANPO ATP-dependent RNA helicase DBP2 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=DBP2 PE=3 SV=1
Length=441

 Score = 107 bits (268),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 86/301 (29%), Positives = 138/301 (46%), Gaps = 61/301 (20%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  L++ P+RELA Q     K+  K+  + ++R   + GGV    Q+  L  G +IV+
Sbjct  185  DGPIVLVLAPTRELAVQIQ---KECSKFGSSSRIRNSCVYGGVPRGQQIRELSRGAEIVI  241

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D++  GK NL +V +LVLDEAD +L  G+   I ++ +QI          Q +
Sbjct  242  ATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQI------RPDRQTL  295

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKG-EDSVPDTVHHVVVPVN--PKTDRLWERLGK  461
            + SAT    +VK+L+   ++ P  V +   E S    +  +V  V+   K DRL +    
Sbjct  296  MWSATWPK-EVKQLAHDYLNDPIQVQIGSLELSASHNITQLVEVVSDFEKRDRLLK----  350

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
             H+ T                                    E K  + ++F  TK  CD 
Sbjct  351  -HLET----------------------------------ASEDKDSKILVFASTKRTCDE  375

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            + +Y  + G         +  + +HGD+   ER   L+ F++G    ++ TDVAARGI +
Sbjct  376  VTKYLREDG---------WPALAIHGDKDQRERDWVLQEFREGRSPIMVATDVAARGIGM  426

Query  582  H  582
            +
Sbjct  427  Y  427


 Score = 40.4 bits (93),  Expect = 0.049, Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (56%), Gaps = 0/61 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F E G    + + V+   +  PT IQ +  P+ L G D++  A TGSGKT ++ +P 
Sbjct  112  ITSFDEAGFPDYVLEEVKAEGFEKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPG  171

Query  61   I  61
            I
Sbjct  172  I  172


>sp|Q6C3X7|DBP5_YARLI ATP-dependent RNA helicase DBP5 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP5 PE=3 
SV=1
Length=488

 Score = 108 bits (270),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 107/378 (28%), Positives = 163/378 (43%), Gaps = 75/378 (20%)

Query  258  LSKAPDGYIVKSQH----SGNAQVTQ-TKFLPN--APKALIVEPSRELAEQTLNNIKQFK  310
            LS  P   I +SQ     +G   +T  ++  PN  A + + + PSRELA QTL+ + + K
Sbjct  134  LSDPPHNMIGQSQSGTGKTGAFSLTMLSRVDPNLKAVQCICLAPSRELARQTLDVVDEMK  193

Query  311  KYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLD  370
            K+ D   +   LI+     R Q    +    I+VGTPG +  L+   +++   V+  VLD
Sbjct  194  KFTD---ITTHLIVPESTERGQKVTSQ----ILVGTPGSVAGLLQKKQIDAKHVKVFVLD  246

Query  371  EADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVD  430
            EAD ++         R+   +P  T      QV++ SAT     V  L+ K+   P  + 
Sbjct  247  EADNMVDSSMGSTCARIKKYLPSST------QVVLFSATFPE-SVLDLAGKMCPNPNEIR  299

Query  431  LKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIK  490
            LK  +   D +  + +                                    E   E  K
Sbjct  300  LKANELNVDAITQLYMDC----------------------------------EDGEEKFK  325

Query  491  ILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRK  550
            +L+  Y++  I       ++IF   +   + L Q          K GH+ S   LH D  
Sbjct  326  MLEELYSMLTIA-----SSVIFVAQRSTANALYQRM-------SKNGHKVSL--LHSDLS  371

Query  551  PHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEK------QNYVHRIG  604
              ER + ++ F+ G  + LI T+V ARGIDI  V  V+N  LP +K      + Y+HRIG
Sbjct  372  VDERDRLMDDFRFGRSKVLISTNVIARGIDIATVSMVVNYDLPTDKNGKPDPETYLHRIG  431

Query  605  RVGRAERMGLAISLVATE  622
            R GR  R G++IS V  E
Sbjct  432  RTGRFGRSGVSISFVHDE  449


 Score = 38.9 bits (89),  Expect = 0.16, Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 42/68 (62%), Gaps = 2/68 (3%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGG--DVLMAAETGSGKTGAFSIPVI  61
            F ++G+   + + +  M +  P+ IQ +++PL+L     +++  +++G+GKTGAFS+ ++
Sbjct  101  FEDLGLDENLLKGLYAMKFNKPSKIQEKALPLLLSDPPHNMIGQSQSGTGKTGAFSLTML  160

Query  62   QIVYETLK  69
              V   LK
Sbjct  161  SRVDPNLK  168


>sp|P32892|DRS1_YEAST ATP-dependent RNA helicase DRS1 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DRS1 
PE=1 SV=2
Length=752

 Score = 110 bits (274),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 97/391 (25%), Positives = 179/391 (46%), Gaps = 57/391 (15%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            + + +++ P+RELA Q  +  KQ  +++        L +GG+  R Q  +L++  DIV+ 
Sbjct  302  STRVIVLLPTRELAIQVADVGKQIARFVSGITFG--LAVGGLNLRQQEQMLKSRPDIVIA  359

Query  346  TPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            TPGR +D + ++   N+  V  LV+DEAD +L +G+ D +N +   +P         Q +
Sbjct  360  TPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPS------NRQNL  413

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT++S              + V L    S+   V  ++ P  PK  +   +L +  +
Sbjct  414  LFSATMNS-----------KIKSLVSL----SLKKPVRIMIDP--PK--KAATKLTQEFV  454

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
            R   +  +D+ +P      +++           +R +      + ++F   K     L  
Sbjct  455  R---IRKRDHLKPAL----LFN----------LIRKLDPTGQKRIVVFVARKETAHRLRI  497

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
                 G          S   LHG     +R  ++ +FK  +V  LICTD+A+RG+DI  +
Sbjct  498  IMGLLG---------MSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKI  548

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV--ATEKEKVWYHVCSSRGKGCYNTR  642
              VIN  +P   + Y+HR+GR  RA R G +++ V  +++   +      S  +    T+
Sbjct  549  EVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVRAAIKSVEENKSLTQ  608

Query  643  LKEDGGCTIWYNEMQLLSEIEEHLNCTISQV  673
             K  G    W  +++  +++ E +N TI  +
Sbjct  609  GKALGRNVDWV-QIEETNKLVESMNDTIEDI  638


 Score = 50.8 bits (120),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 43/67 (64%), Gaps = 1/67 (1%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ-  62
            F+ + +   + + +  + ++ P+ IQ+ +IP+ L G D++  A TGSGKT AF IP+I+ 
Sbjct  233  FNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIER  292

Query  63   IVYETLK  69
            ++Y+  K
Sbjct  293  LLYKPAK  299


>sp|A7A0P8|DRS1_YEAS7 ATP-dependent RNA helicase DRS1 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DRS1 PE=3 SV=1
Length=754

 Score = 110 bits (274),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 97/391 (25%), Positives = 179/391 (46%), Gaps = 57/391 (15%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            + + +++ P+RELA Q  +  KQ  +++        L +GG+  R Q  +L++  DIV+ 
Sbjct  304  STRVIVLLPTRELAIQVADVGKQIARFVSGITFG--LAVGGLNLRQQEQMLKSRPDIVIA  361

Query  346  TPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            TPGR +D + ++   N+  V  LV+DEAD +L +G+ D +N +   +P         Q +
Sbjct  362  TPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPS------NRQNL  415

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT++S              + V L    S+   V  ++ P  PK  +   +L +  +
Sbjct  416  LFSATMNS-----------KIKSLVSL----SLKKPVRIMIDP--PK--KAATKLTQEFV  456

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
            R   +  +D+ +P      +++           +R +      + ++F   K     L  
Sbjct  457  R---IRKRDHLKPAL----LFN----------LIRKLDPTGQKRIVVFVARKETAHRLRI  499

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
                 G          S   LHG     +R  ++ +FK  +V  LICTD+A+RG+DI  +
Sbjct  500  IMGLLG---------MSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKI  550

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV--ATEKEKVWYHVCSSRGKGCYNTR  642
              VIN  +P   + Y+HR+GR  RA R G +++ V  +++   +      S  +    T+
Sbjct  551  EVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVRAAIKSVEENKSLTQ  610

Query  643  LKEDGGCTIWYNEMQLLSEIEEHLNCTISQV  673
             K  G    W  +++  +++ E +N TI  +
Sbjct  611  GKALGRNVDWV-QIEETNKLVESMNDTIEDI  640


 Score = 50.8 bits (120),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 43/67 (64%), Gaps = 1/67 (1%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ-  62
            F+ + +   + + +  + ++ P+ IQ+ +IP+ L G D++  A TGSGKT AF IP+I+ 
Sbjct  235  FNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIER  294

Query  63   IVYETLK  69
            ++Y+  K
Sbjct  295  LLYKPAK  301


>sp|A6RW56|RRP3_BOTFB ATP-dependent rRNA helicase rrp3 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=rrp3 PE=3 SV=1
Length=486

 Score = 108 bits (269),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 152/348 (44%), Gaps = 59/348 (17%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR  349
            L++ P+RELA Q     +QF+      +++  +I+GG+    Q   L     I+V TPGR
Sbjct  132  LVLAPTRELAYQI---SQQFEALGSVIRVKCAVIVGGMDMVPQSIALGKKPHIIVATPGR  188

Query  350  L-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSA  408
            L D L +T   +L  +++LV+DEAD LL   +   ++++   +P      +  +  + SA
Sbjct  189  LLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLP------RERRTYLFSA  242

Query  409  TLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDD  468
            T+ S  V+ L    +  P  V +        TV  ++               +++I    
Sbjct  243  TISS-KVESLQRASLKDPLRVSISSNKY--QTVSTLI---------------QNYIFIPL  284

Query  469  VHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQ  528
            +H                      K  Y +  + E     AIIF RT  +   +      
Sbjct  285  IH----------------------KDTYLIYLLNEFAGQSAIIFTRTVNETQRIAILLRT  322

Query  529  QGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVI  588
             G         F  + LHG      R   L +F+ G    L+ TDVAARG+DI  V  V+
Sbjct  323  LG---------FGAIPLHGQLSQSSRLGALNKFRAGSREILVATDVAARGLDIPSVDVVL  373

Query  589  NVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGK  636
            N  +P + + Y+HR+GR  RA + G AIS+V     +++  + ++ GK
Sbjct  374  NYDVPQDSKTYIHRVGRTARAGKSGHAISVVTQYDLEIFMRIEAALGK  421


 Score = 62.4 bits (150),  Expect = 7e-09, Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 45/64 (70%), Gaps = 0/64 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F ++G++  + +A + + +  PT IQ ESIPL L G D++  AETGSGKT AF++P++Q
Sbjct  61   SFKDLGIVDSLCEACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQ  120

Query  63   IVYE  66
             + +
Sbjct  121  ALLD  124


>sp|Q29S22|DDX47_BOVIN Probable ATP-dependent RNA helicase DDX47 
OS=Bos taurus OX=9913 GN=DDX47 PE=2 SV=1
Length=457

 Score = 107 bits (268),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 90/337 (27%), Positives = 149/337 (44%), Gaps = 60/337 (18%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P    AL++ P+RELA Q     +QF+    +  ++  +I+GG+ +  Q   L     IV
Sbjct  92   PQRLFALVLTPTRELAFQI---SEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIV  148

Query  344  VGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            + TPGRL D L +T   NL  +++LV+DEAD +L+  +   ++++   IP+   D K   
Sbjct  149  IATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR---DRK---  202

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
              + SAT+    V+KL    +  P    +  +    + +    + +  K           
Sbjct  203  TFLFSATMTK-KVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSK-----------  250

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
                                          K  Y V  + E   +  +IFC T   C+N 
Sbjct  251  -----------------------------FKDTYLVYILNELAGNSFMIFCST---CNNT  278

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
            ++  +        +   F+ + LHG     +R  +L +FK      L+ TDVA+RG+DI 
Sbjct  279  QRTALLL------RNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIP  332

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
             V  V+N  +P   ++Y+HR+GR  RA R G AI+ V
Sbjct  333  HVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFV  369


 Score = 68.9 bits (167),  Expect = 6e-11, Method: Compositional matrix adjust.
 Identities = 30/64 (47%), Positives = 45/64 (70%), Gaps = 0/64 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F ++GV   + +A +++ W  PT IQ E+IPL L G D++  AETGSGKTGAF++P++  
Sbjct  28  FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA  87

Query  64  VYET  67
           + ET
Sbjct  88  LLET  91


>sp|Q8SQK9|DHH1_ENCCU ATP-dependent RNA helicase DHH1 OS=Encephalitozoon 
cuniculi (strain GB-M1) OX=284813 GN=DHH1 PE=3 SV=2
Length=487

 Score = 108 bits (269),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 95/352 (27%), Positives = 150/352 (43%), Gaps = 66/352 (19%)

Query  288  KALIVEPSRELAEQTLNNIKQFKK---YIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + +I+ P RELA Q   N+K+  +    I  P      ++GG + +D +  + NGV ++V
Sbjct  176  QGIILVPIRELALQISRNVKRMSEGTGVISAP------VVGGTSMQDDIIRVSNGVHVMV  229

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GTPGR+ DLV      LS+   LV DEAD LL   + + + ++ + +P      +  Q++
Sbjct  230  GTPGRIVDLVEKRVGTLSKRVILVFDEADKLLDVTFGETVTKLLDLLP------REKQML  283

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT   F V     + M  P  ++L  E + P  V      V P              
Sbjct  284  LYSATFPYF-VTGFIRRYMKNPLCINLMKELA-PVGVKQFYTYVKP--------------  327

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                                 SE +  LK      +I     +Q +IFC +    + L  
Sbjct  328  ---------------------SEKLLCLKSLLLRLSI-----NQCVIFCNSIKTVELLAM  361

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
               + G              +H      +R      F KG  + L+ TD+  RG+D    
Sbjct  362  KITEMG---------LPSYFIHSKMAQEDRNIVFHNFLKGKCKILVATDLITRGVDAPNT  412

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGK  636
             YVIN  +    ++Y+HRIGR GR    G+AISLV TE++++   + +  GK
Sbjct  413  NYVINFDISKSPESYLHRIGRAGRFGAPGVAISLVTTEEKEMLMDIEAKLGK  464


 Score = 47.0 bits (110),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 16/62 (26%), Positives = 41/62 (66%), Gaps = 0/62 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             +  +G+ P + + + ++ +  P+ +Q  SIP +LGG ++L+ ++ G+GKT ++ +P++ 
Sbjct  107  GWESLGLGPVLLKRIRDIGYDFPSPVQVASIPHVLGGKNLLVRSKNGTGKTASYIVPMLN  166

Query  63   IV  64
            ++
Sbjct  167  MI  168


>sp|Q8W4E1|RH47_ARATH DEAD-box ATP-dependent RNA helicase 47, 
mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RH47 PE=1 SV=2
Length=551

 Score = 108 bits (270),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 165/363 (45%), Gaps = 44/363 (12%)

Query  268  KSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
            +S HS N + T+ +       A+IV PSREL  Q +  +++    +   ++ + L+ G  
Sbjct  180  RSSHSENDKRTEIQ-------AMIVAPSRELGMQIVREVEKLLGPVHR-RMVQQLVGGAN  231

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM  387
              R + ++ +N   IVVGTPGR+ ++   GKL+    RFLVLDE D LLS  + + I+R+
Sbjct  232  RMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFREDIHRI  291

Query  388  HNQIPQVTSDGKR--------LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPD  439
               + + +  G +         Q I+ SAT+  F V + ++   H P  V  +     P 
Sbjct  292  LEHVGKRSGAGPKGEVDERANRQTILVSATV-PFSVIRAAKSWSHEPVLV--QANKVTPL  348

Query  440  TVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVR  499
                   PV   T    E  G+       +     + P A            LK  Y + 
Sbjct  349  DTVQPSAPVMSLTPTTSEADGQ-------IQTTIQSLPPA------------LKHYYCI-  388

Query  500  AIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDK----KGHQFSCVCLHGDRKPHERK  555
            +  +HK+D  +  C   +D  ++  +        D     +    +   +HGD     R 
Sbjct  389  SKHQHKVD-TLRRCVHALDAQSVIAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRS  447

Query  556  QNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLA  615
              L++FK G+++ L+  +++ARG+D+     V+N+ LP +  +Y HR GR GR  R G  
Sbjct  448  TVLKKFKNGEIKVLVTNELSARGLDVAECDLVVNLELPTDAVHYAHRAGRTGRLGRKGTV  507

Query  616  ISL  618
            +++
Sbjct  508  VTV  510


 Score = 50.1 bits (118),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 20/59 (34%), Positives = 40/59 (68%), Gaps = 0/59 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            +F E+G+   +  ++E   + +PTD+Q+ ++P I+ G D ++ + TGSGKT A+ +P++
Sbjct  111  SFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPIL  169


>sp|Q5R6D8|DDX46_PONAB Probable ATP-dependent RNA helicase DDX46 
OS=Pongo abelii OX=9601 GN=DDX46 PE=2 SV=1
Length=1032

 Score = 109 bits (273),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 92/342 (27%), Positives = 154/342 (45%), Gaps = 61/342 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P A+I+ P+RELA Q     K+F K +    LR + + GG    +Q++ L+ G +I+V T
Sbjct  446  PIAVIMTPTRELALQITKECKKFSKTLG---LRVVCVYGGTGISEQIAELKRGAEIIVCT  502

Query  347  PGRLDDLVS--TGKL-NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            PGR+ D+++  +G++ NL +V ++VLDEAD +   G+   + R+   +  V  D    Q 
Sbjct  503  PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRI---VDNVRPD---RQT  556

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            ++ SAT     ++ L  +I+  P  V + G   V   V   V+ +  +   L       H
Sbjct  557  VMFSATFPRA-MEALVRRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGH  615

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
             +                 E  S  I + K E+A   +K+          R    C    
Sbjct  616  YQ-----------------ESGSVIIFVDKQEHADGLLKD--------LMRASYPC----  646

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
                               + LHG    ++R   +  FK G  + L+ T VAARG+D+  
Sbjct  647  -------------------MSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKH  687

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  V+N + P+  ++YVHR GR GRA   G A + +  ++ +
Sbjct  688  LILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQAR  729


 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 21/62 (34%), Positives = 41/62 (66%), Gaps = 0/62 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + ++ + G+  +I  ++++  +  PT IQ ++IP I+ G D++  A+TGSGKT AF +P+
Sbjct  371  IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM  430

Query  61   IQ  62
             +
Sbjct  431  FR  432


>sp|Q6CM95|SUB2_KLULA ATP-dependent RNA helicase SUB2 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=SUB2 PE=3 SV=1
Length=437

 Score = 107 bits (266),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 90/334 (27%), Positives = 155/334 (46%), Gaps = 59/334 (18%)

Query  295  SRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL---ENGVDIVVGTPGRLD  351
            +RELA Q  N   +F KY+  P ++  +  GG   ++ + +L   E    I+V TPGRL 
Sbjct  130  ARELAYQIRNEYLRFSKYM--PDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLK  187

Query  352  DLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLH  411
             LV    ++LS V+  V+DE D +L +     + R    I + T   K  QV++ SATL 
Sbjct  188  ALVRDKHIDLSHVKNFVIDECDKVLEELD---MRRDVQDIFRATPRDK--QVMMFSATL-  241

Query  412  SFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHA  471
            S +++ +  + +  P  +++  +D    T+H                L + +I+ ++   
Sbjct  242  SQEIRPICRRFLQNP--LEIFVDDEAKLTLHG---------------LQQYYIKLNE---  281

Query  472  KDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGG  531
            K+  R  A                   + + + + +Q IIF ++ +  + L +       
Sbjct  282  KEKNRKLA-------------------QLLDDLEFNQVIIFVKSTVRANELTKLL-----  317

Query  532  GPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT  591
                    F  + +HG  K  ER    + FK+ + R  + TDV  RGIDI  +   IN  
Sbjct  318  ----NASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYD  373

Query  592  LPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +P+E   Y+HR+GR GR    GLAIS++++E ++
Sbjct  374  MPNEADQYLHRVGRAGRFGTKGLAISMISSEDDE  407


 Score = 43.5 bits (101),  Expect = 0.006, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +  + PE+++A+ +  +  P+++Q  +IP  + G DVL  A++G GKT  F +  +Q
Sbjct  55   FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQ  113


>sp|Q10PV9|RH47B_ORYSJ DEAD-box ATP-dependent RNA helicase 47B 
OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0219700 PE=2 
SV=1
Length=573

 Score = 108 bits (270),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 96/349 (28%), Positives = 155/349 (44%), Gaps = 44/349 (13%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +A+IV PSREL  Q +  +++     D  +L + L+ G   +R + ++ +N   IVVGTP
Sbjct  212  EAVIVAPSRELGMQIVREVEKILGPNDK-RLVQQLVGGANRSRQEEALKKNKPLIVVGTP  270

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR-------  400
            GR+ ++ + GKL+    RFLVLDE D LLS  Y + ++R+   + + +    R       
Sbjct  271  GRISEISAGGKLHTHGCRFLVLDEVDQLLSFNYREDMHRILEHVGRKSGTSSRDILGPLA  330

Query  401  ----LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLW  456
                 Q I+ SAT+  F V + +    H P  V  +    VP     V  PV  +TD   
Sbjct  331  RRSERQTILVSATI-PFSVIRAARSWGHDPVLV--RAMSVVPLDSITVPRPVLSQTD---  384

Query  457  ERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGE---YAVRAIKEHKMDQAIIFC  513
                                P + S  +   A+  L      Y   +  +HK+D  +  C
Sbjct  385  ------------------ANPNSPSNSVNQAAVNSLPPSLEHYYCISKAQHKVD-TLRRC  425

Query  514  RTKIDCDNLEQYFIQQGGGPDK----KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL  569
               ++   +  +        D     +        LHGD     R   L++FK G+ R L
Sbjct  426  IHALEAQTVIAFMNNTKPLKDVVFKLEARGMKATELHGDLGKLARSTVLKKFKDGEFRVL  485

Query  570  ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            +  +++ARG+D+     VIN+ LP +  +Y HR GR GR  R G  +++
Sbjct  486  VTNELSARGLDVPECDLVINLDLPTDSTHYAHRAGRTGRLGRKGTVVTI  534


 Score = 43.9 bits (102),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 37/59 (63%), Gaps = 0/59 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            +F E+G+ P +   + +     PT++Q+ +IP+I    D ++ + TGSGKT A+ +P++
Sbjct  132  SFEELGLPPLLIDRLNKEGLSTPTEVQSAAIPIISQKHDAVIQSYTGSGKTLAYLLPIL  190


>sp|Q93Y39|RH13_ARATH DEAD-box ATP-dependent RNA helicase 13 OS=Arabidopsis 
thaliana OX=3702 GN=RH13 PE=2 SV=3
Length=826

 Score = 109 bits (272),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 102/361 (28%), Positives = 168/361 (47%), Gaps = 36/361 (10%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+RELA Q   +++   K   N  ++ + I+GG+ +  Q   L+   +IVV TP
Sbjct  281  RALIITPTRELALQVTEHLENAAK---NLSVKVVPIVGGMFSEKQERRLKEKPEIVVATP  337

Query  348  GRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT---SDGKRL  401
            GRL +L+S G+   + L  + F VLDEAD ++ +G+   +  + + +P VT   ++GK  
Sbjct  338  GRLWELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSILDLLP-VTDKPNEGK-T  395

Query  402  QVIVCSATLHSFDVKKLSEKIMHFPTWVDL------KGEDSVPDTVHHVVVPVNPKTDRL  455
            Q +  + T+   +V K   +   F   + L      K +     +       VN   + L
Sbjct  396  QTVKSNDTV--LNVPKKKRQTFVFSATIALSSDFRKKLKRGSSKSKQSSSGEVNS-IEVL  452

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGE---YAVRAIKEHKMDQAIIF  512
             ER G      D+V   D T     +P++    IK  + E   Y    +  H   + I+F
Sbjct  453  SERAGMR----DNVAIIDLTTTSILAPKIEESFIKCEEKEKDAYLYYILSVHGQGRTIVF  508

Query  513  CRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICT  572
            C +  D  ++       G              L  + K   R ++++RF+  +   LI T
Sbjct  509  CTSVTDLRHISGLLKILG---------LDVCTLFSEMKQRARLKSIDRFRASENGILIAT  559

Query  573  DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
            D+ ARGIDI  V  +I+  LP   + YVHR GR  RA   G +I+L+   +   +Y +C 
Sbjct  560  DLVARGIDIKNVRTIIHYKLPHSAEVYVHRCGRTARAFADGCSIALIEPNETSKFYTLCK  619

Query  633  S  633
            S
Sbjct  620  S  620


 Score = 48.1 bits (113),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 25/63 (40%), Positives = 39/63 (62%), Gaps = 1/63 (2%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLI-LGGGDVLMAAETGSGKTGAFSIP  59
             +A+S M + P + +++  +D+  PT IQ     +    G DV+ AAETGSGKT AF +P
Sbjct  189  FSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLP  248

Query  60   VIQ  62
            ++Q
Sbjct  249  ILQ  251


>sp|Q6C799|DBP8_YARLI ATP-dependent RNA helicase DBP8 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP8 PE=3 
SV=1
Length=442

 Score = 107 bits (266),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 152/340 (45%), Gaps = 60/340 (18%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR  349
            L++ P+RELA Q     +QF     N  +R  LI GGV    Q   L+     V+ TPGR
Sbjct  73   LVLTPTRELAIQI---AEQFTALGANMNIRVALIYGGVDMVKQSLELQKMPHFVIATPGR  129

Query  350  LDDLV-STGKLNLS---QVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            L D + S+G+  +    +VR++V+DEAD LL+ G+   +    + +P    D  + Q ++
Sbjct  130  LADHIRSSGEDTIRGFRRVRYVVMDEADRLLTPGFVPDLKTCMDLLP----DPSKRQTLL  185

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             +AT+    V+ L ++          KG   + +    + VP           L +S++ 
Sbjct  186  FTATVTDA-VRALKDRTGE-------KGPPFIHEIASDIAVPST---------LTQSYLF  228

Query  466  TDDVHAKDNTRPG-ANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                       PG      +W           A+    +++   AIIF       + L +
Sbjct  229  L----------PGYVREAYLW-----------AILTHPDNEKKSAIIFVNRTQTAETLRR  267

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
              +                 LH + +  ER   L RF+    R L+ TDVA+RG+DI  V
Sbjct  268  MLM---------ALDVKTASLHSEMRQQERVNALGRFRAQAARVLVATDVASRGLDIPTV  318

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
              VIN  LP +  +Y+HR+GR  RA R G ++SLV TE++
Sbjct  319  EMVINFDLPADADDYIHRVGRTARAGRKGQSVSLV-TERD  357


 Score = 43.5 bits (101),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 21/59 (36%), Positives = 36/59 (61%), Gaps = 0/59 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
           +F+++G+   + +++  M    P+ IQ   IP I+ G D +  A TGSGKT AF+ P++
Sbjct  2   SFTDLGLPEWLNESLSNMAITKPSAIQKACIPQIMKGKDCIGGARTGSGKTIAFAAPML  60


>sp|Q2U8K6|DBP5_ASPOR ATP-dependent RNA helicase dbp5 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp5 
PE=3 SV=1
Length=487

 Score = 107 bits (267),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 106/405 (26%), Positives = 173/405 (43%), Gaps = 113/405 (28%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAA--RDQLSVLENGVDIVV  344
            P+ALI+ P+RELA Q +  I+   +++D      L +   V A    + S +E+ V  VV
Sbjct  153  PQALILAPTRELARQIVGVIQCMGQFLDG-----LNVSTAVPADTNSRHSKIESSV--VV  205

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQV  403
            GTPG + D++    +  ++++ LVLDEAD +L  QG  D   R+   +P      K +QV
Sbjct  206  GTPGTVMDMIRKRVMVANKLKVLVLDEADNMLDQQGLGDQCIRVKALLP------KDIQV  259

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLW---ERLG  460
            ++ SAT               FPT V            H       P+ + L    E L 
Sbjct  260  VLFSAT---------------FPTHV------------HQYASKFAPQANELTLQHEELT  292

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
               I+   +   D             +  K L   Y +  +       +IIF +T+    
Sbjct  293  VEGIKQLYLDCSDE-----------EDKYKTLVQLYGLLTVAS-----SIIFVKTRASAA  336

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             +E+  + +G          +   L G  +  +R   +++F+ G  + LI T+V ARGID
Sbjct  337  EIEKRMVAEG---------HTVASLTGGIEGSQRDAVIDQFRAGQAKVLITTNVLARGID  387

Query  581  IHGVPYVINVTLPD-----------EKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            +  V  VIN  +P+           + Q Y+HRIGR GR  R+G++IS V+  +E  W  
Sbjct  388  VSTVSMVINYDIPELHQPGAPERQADFQTYLHRIGRTGRFGRVGVSISFVSNREE--W--  443

Query  630  VCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVE  674
                                        +L++I+++ NCTI +V+
Sbjct  444  ---------------------------NMLNQIQQYFNCTIQRVD  461


 Score = 40.8 bits (94),  Expect = 0.047, Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 37/58 (64%), Gaps = 2/58 (3%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            +F ++G+ P I Q +  M++  P+ IQ  ++PL+L     +++  +++G+GKT AF +
Sbjct  79   SFEDLGLDPRILQGLSAMNFRKPSKIQERALPLLLNNPPKNLVGQSQSGTGKTAAFVL  136


>sp|Q0CI35|MAK5_ASPTN ATP-dependent RNA helicase mak5 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=mak5 
PE=3 SV=2
Length=774

 Score = 108 bits (271),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 101/365 (28%), Positives = 162/365 (44%), Gaps = 57/365 (16%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
             +P ALI+ P+RELA Q + +I +   +      R  L+ GG++ + Q  +L NG DIV+
Sbjct  281  TSPIALILSPTRELAHQLVKHIGEVITHAPGVNARIALLTGGLSVQKQQRLL-NGADIVI  339

Query  345  GTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGY----------------SDFIN  385
            GTPGR+ +++S G+     + ++++LV+DEAD LLS+G+                +DF  
Sbjct  340  GTPGRVWEVLSGGQGLISKMKEIKYLVVDEADRLLSEGHFKEAHEILAALDREEINDFPG  399

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
               ++     S  +R Q +V SAT H    + L +K+     W    G D          
Sbjct  400  AEEDESDDEDSKTQR-QTLVFSATFH----RDLQQKLAGKGKWT---GSD----------  441

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAI----KILKGEYAVRAI  501
              +  K + +   L K + R +     D   P +   E   E I     + K  Y    +
Sbjct  442  --LMNKQESMEYLLKKLNFREEKPKFID-VNPVSQMAEGLKEGIVECAAMEKDLYLYTLL  498

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
              H   + ++F  +      L Q+          +  Q   + LH       R +++ERF
Sbjct  499  LYHPKHRTLVFTNSISAVRRLTQFL---------QALQLPALALHSSMAQKARLRSVERF  549

Query  562  KKGDV---RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
                      L+ TDVAARG+DI G+ +VI+   P     YVHR GR  RA   G ++ +
Sbjct  550  SSPTADPSTILVATDVAARGLDIKGIDFVIHYHAPRTADTYVHRSGRTARAGASGKSVII  609

Query  619  VATEK  623
             A E+
Sbjct  610  CAPEE  614


 Score = 58.5 bits (140),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 31/89 (35%), Positives = 51/89 (57%), Gaps = 0/89 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++A+  +G+ PEI  ++ ++ +  PT +Q   IP IL G DV+  A TGSGKT AF IP+
Sbjct  201  ISAWESLGLSPEILNSLSKLKFSSPTAVQKSCIPPILDGHDVVGKASTGSGKTLAFGIPI  260

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLN  89
            ++   E  + + + K  K      A +L+
Sbjct  261  LEYYLEKKRRETKNKDDKKETSPIALILS  289


>sp|Q09903|DRS1_SCHPO ATP-dependent RNA helicase drs1 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=drs1 
PE=3 SV=1
Length=754

 Score = 108 bits (271),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 166/397 (42%), Gaps = 69/397 (17%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + LI+ P+RELA Q  +   +   + D   +   L IGG++ + Q   L    DIV+ TP
Sbjct  332  RVLILCPTRELAMQCHSVATKIASFTD---IMVCLCIGGLSLKLQEQELRKRPDIVIATP  388

Query  348  GR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            GR +D + ++    +  +  +V+DEAD +L  G++D +N +    P      K  Q ++ 
Sbjct  389  GRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACP------KSRQTMLF  442

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT+    V  L    ++ P  V +  + +    +    V V P+ +             
Sbjct  443  SATMTD-KVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRE-------------  488

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                                    +L+    +   KE    + IIF R+K     +   F
Sbjct  489  ------------------------LLRPAMLIYLCKELFHRRTIIFFRSKAFAHKMRVIF  524

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                          +   +HG     +R + LE F+ G   +L+ TDVA+RGIDI G+  
Sbjct  525  ---------GLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEV  575

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKED  646
            VIN   P   + Y+HR+GR  RA R G AI+L      KV   V   +     NT+L   
Sbjct  576  VINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDRKVLKGVF--KNSSAQNTKL---  630

Query  647  GGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDE  683
                + +N++       E     I ++EP ++  +DE
Sbjct  631  VNRNLDFNKV-------EKFGKEIEELEPVVQKVLDE  660


 Score = 53.5 bits (127),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 40/61 (66%), Gaps = 0/61 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            ++F  M +   I + +  + + +PT IQ ++IPL L G D++ AA TGSGKT AF +P++
Sbjct  259  SSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPIL  318

Query  62   Q  62
            +
Sbjct  319  E  319


>sp|A7EY76|DBP5_SCLS1 ATP-dependent RNA helicase dbp5 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=dbp5 PE=3 SV=1
Length=470

 Score = 107 bits (266),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 90/349 (26%), Positives = 156/349 (45%), Gaps = 71/349 (20%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P  P+AL + PSRELA Q    ++   ++++   + +  I G V    +++ +     ++
Sbjct  138  PTTPQALCLAPSRELARQIEGVVRSIGQFVEGLSV-QAAIPGAVERNARVNAM-----VI  191

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQ  402
            VGTPG + DL+    ++ SQ++ L LDEAD +L  QG  D   R+ + I       K  Q
Sbjct  192  VGTPGTVMDLIKRKSIDASQMKVLCLDEADNMLDQQGLGDQCLRVKSMI-------KVEQ  244

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
            +++ SAT                            PD V+      +P+ + +       
Sbjct  245  ILLFSATF---------------------------PDEVYGFAQQFSPRANEI-------  270

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
             ++ D++      +   + P       ++ K E  V+      +  +IIF + +    ++
Sbjct  271  KLKRDELTVSGIKQMFMDCPN------EVGKYEILVKLYGLMTIGSSIIFVKRRDTASHI  324

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
             +    +G       H+ + +  HG  +  ER   LE F++G  + LI T+V ARGID+ 
Sbjct  325  AERLTAEG-------HKVAAI--HGAFEGAERDTVLEDFRQGKAKVLITTNVLARGIDVQ  375

Query  583  GVPYVINVTLP--------DEKQNYVHRIGRVGRAERMGLAISLVATEK  623
             V  VIN  +P         + + Y+HRIGR GR  R+G++IS V   K
Sbjct  376  SVSMVINYDIPMKGRSDFEPDPETYLHRIGRTGRFGRVGVSISFVFDRK  424


 Score = 41.2 bits (95),  Expect = 0.035, Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 39/60 (65%), Gaps = 2/60 (3%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSIPVI  61
            F ++G+   I + +  M++  P+ IQ +++PL+LG    +++  +++G+GKT AF I ++
Sbjct  71   FEQLGIDASILKGLYAMNFKKPSKIQEKALPLLLGNPPTNMIAQSQSGTGKTAAFVITIL  130


>sp|Q6CJV1|DRS1_KLULA ATP-dependent RNA helicase DRS1 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DRS1 PE=3 SV=1
Length=748

 Score = 108 bits (270),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 90/335 (27%), Positives = 153/335 (46%), Gaps = 54/335 (16%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            + + +++ P+RELA Q  +  K   K+++   L   L +GG+  R Q   L+   DIV+ 
Sbjct  304  STRVVVLTPTRELAIQVADVGKNIGKFVNG--LTFGLAVGGLNLRQQEQALKTRPDIVIA  361

Query  346  TPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            TPGR +D L ++   ++  V  LV+DEAD +L +G+ + +  + + IP      KR Q +
Sbjct  362  TPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIP-----SKR-QTL  415

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT++S  +K+L    +  P              V  ++ P     D+L +      I
Sbjct  416  LFSATMNS-KIKQLISLSLKKP--------------VRIMIDPPKQAADKLTQEF----I  456

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
            R   +  +D+ +P      ++            +R +      + ++F   K     L  
Sbjct  457  R---IRKRDHLKPAL----LYQ----------LIRKLDNTSQKRIVVFVARKETAHKLRI  499

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
                 G              LHG     +R Q++  FK   V  LICTD+A+RG+DI  +
Sbjct  500  VLGLLG---------MQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKI  550

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
              VIN  +P   + Y+HR+GR  RA R G +++ V
Sbjct  551  EVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFV  585


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 21/59 (36%), Positives = 37/59 (63%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F+ + +   + + +  + +  P+ IQ+ +IP+ L G D++  A TGSGKT AF IP+I+
Sbjct  235  FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE  293


>sp|Q756G5|DBP8_EREGS ATP-dependent RNA helicase DBP8 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DBP8 PE=3 SV=1
Length=435

 Score = 106 bits (265),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 91/339 (27%), Positives = 148/339 (44%), Gaps = 61/339 (18%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR  349
            +++ P+RELA Q     +QF        +R  L++GG     Q   L+     ++ TPGR
Sbjct  78   IVLTPTRELAMQI---AEQFTALGSVMNIRVALVVGGEDIVSQALELQRKPHFIIATPGR  134

Query  350  LDD-LVSTGKLN---LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            L   ++ +G+     L +VR+LVLDEAD LL+  +SD +        Q+    ++ Q ++
Sbjct  135  LAHHIMHSGEDTIGGLKRVRYLVLDEADILLTDTFSDALA----TCVQILPPKEKRQNLL  190

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSV----PDTVHHVVVPVNPKTDRLWERLGK  461
             +AT+        +++++         G+  +     + +  + VP + +T  L      
Sbjct  191  FTATM--------TDQVLALKDAPPTSGKPPLFSFHVENLDDLAVPASLQTTYLL-----  237

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
                                PE   EA       Y V + +E+K   AI+F    I  + 
Sbjct  238  -------------------VPEHVKEAYL-----YQVLSSEEYKSKSAIVFVNRTISAEI  273

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            L +  +Q          +     LH      ER  +L+RF+    R LI TDVA+RG+DI
Sbjct  274  LRRMLMQL---------EIRVTSLHSQMPQRERTNSLQRFRANAARVLIATDVASRGLDI  324

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
              V  V+N  +P     Y+HR GR  RA R G A+S +A
Sbjct  325  PAVQLVVNYDIPANPDTYIHRAGRTARAGRGGEALSFIA  363


 Score = 51.2 bits (121),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (62%), Gaps = 0/60 (0%)

Query  2   AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
           + F ++GV   +A+A+  M    PT IQ   IP IL G D +  A+TGSGKT AF+ P++
Sbjct  6   STFKDLGVAKWLAEALNSMKITQPTTIQKACIPEILAGRDCIGGAKTGSGKTIAFAAPML  65


>sp|Q8SR63|RRP3_ENCCU ATP-dependent rRNA helicase RRP3 OS=Encephalitozoon 
cuniculi (strain GB-M1) OX=284813 GN=RRP3 PE=3 SV=1
Length=400

 Score = 105 bits (263),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 143/332 (43%), Gaps = 61/332 (18%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR  349
            L+V P+REL+ Q       F+       LR  L++GG     Q + L     +VVGTPGR
Sbjct  73   LVVAPTRELSSQIAECFNMFQA----TGLRVCLLVGGANFNVQANQLSKRPHVVVGTPGR  128

Query  350  L-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSA  408
            + + ++ T      +VR  VLDEAD    Q   DF+  +   IP   S  ++ Q ++ +A
Sbjct  129  IAEHVLKTKSFRTERVRKFVLDEADRFFEQ---DFVEDLETIIP---SLREKRQTLLFTA  182

Query  409  TLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDD  468
            T+ S ++ KLS  I+                          PKT R  E           
Sbjct  183  TM-SDEISKLSSSILK------------------------RPKTIRTAE-----------  206

Query  469  VHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQ  528
               K  T P      ++  A+K  K    V  ++  +    I+F    +    +     +
Sbjct  207  ---KYETVPALKEYYLFV-AMK-WKNSALVELLEMSQGMSVIVFVSMCVTARVMSLALAR  261

Query  529  QGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVI  588
             G         F    LHG+    +R++ +  FK+     L+CTD+ +RG+DI  V  VI
Sbjct  262  LG---------FCSEALHGELSQEKREEAMRSFKESRFNVLVCTDLGSRGLDISHVDLVI  312

Query  589  NVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            N  +P   ++Y+HR+GR  RA R G AI+LV 
Sbjct  313  NFDVPKSGKDYIHRVGRTARAGRSGTAITLVT  344


 Score = 53.5 bits (127),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 22/58 (38%), Positives = 38/58 (66%), Gaps = 0/58 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
           F ++ +   + +  +E     PT++Q + IP +LGGGDV+  ++TGSGKT AF +P++
Sbjct  3   FGDLRIDESLIKTCQEKGITRPTEVQRQVIPAVLGGGDVIAVSQTGSGKTLAFVLPIV  60


>sp|A4REU9|MAK5_PYRO7 ATP-dependent RNA helicase MAK5 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=MAK5 PE=3 SV=2
Length=760

 Score = 108 bits (270),  Expect = 5e-23, Method: Compositional matrix adjust.
 Identities = 114/387 (29%), Positives = 175/387 (45%), Gaps = 72/387 (19%)

Query  266  IVKSQHSGNAQVTQTKFLPN----APKALIVEPSRELAEQTLNNIKQF-KKYIDNPKLRE  320
            IV+   S NA  TQ+K +       P AL++ P+RELA Q  ++IK        +P +  
Sbjct  245  IVEKWLSINAS-TQSKRVAEGETKTPIALVLSPTRELAHQLTDHIKNLCAGLATSPYV--  301

Query  321  LLIIGGVAARDQLSVLENGVDIVVGTPGRL-DDLVSTGKL--NLSQVRFLVLDEADGLLS  377
              + GG++   Q   LE   DIVVGTPGRL + L S+ KL      ++FLV+DEAD LLS
Sbjct  302  CSVTGGLSVHKQQRQLEKA-DIVVGTPGRLWEVLSSSTKLIQAFRGIKFLVVDEADRLLS  360

Query  378  QGYSDFINRMHNQIPQVTSD-------GKRLQVIVCSATLHS-----------FDVKKLS  419
            +G+      +   + +V +D       GK  Q +V SAT +            FD+   S
Sbjct  361  EGHFKDAKDIFEGLDKVETDDDGIIRGGKARQTLVFSATFNKGLQQKLAGKGRFDLATDS  420

Query  420  EKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGA  479
            + + +      LK  + +P       + VNP   ++ E L +  +             GA
Sbjct  421  QSMEYL--LKKLKFREEIPK-----FIDVNP-VSQMAEGLKEGIVEC-----------GA  461

Query  480  NSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQ  539
               +++  ++ ++           H   + ++F  +      L    +QQ   P      
Sbjct  462  MEKDLYLYSLLLM-----------HPTQRTLVFTNSISSVRRLTP-MLQQLTLP------  503

Query  540  FSCVCLHGDRKPHERKQNLERF---KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEK  596
               + LH       R +++ERF   K G    LI TDVAARG+DI G+  VI+  +P   
Sbjct  504  --VIALHSQMIQKARLRSVERFTSSKPGSASILIATDVAARGLDIRGIDVVIHYHVPRTA  561

Query  597  QNYVHRIGRVGRAERMGLAISLVATEK  623
              YVHR GR  RA+  GL+I + A E+
Sbjct  562  DAYVHRSGRTARADSSGLSILICAPEE  588


 Score = 55.1 bits (131),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 38/56 (68%), Gaps = 0/56 (0%)

Query  7    MGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +G+  EI  ++ ++ +  PT IQA +IP IL G DV+  A TGSGKT AF IP+++
Sbjct  192  LGLSEEIMSSIAKLKFAKPTAIQAATIPEILAGHDVVGKASTGSGKTLAFGIPIVE  247


>sp|Q9UHL0|DDX25_HUMAN ATP-dependent RNA helicase DDX25 OS=Homo 
sapiens OX=9606 GN=DDX25 PE=1 SV=2
Length=483

 Score = 107 bits (266),  Expect = 5e-23, Method: Compositional matrix adjust.
 Identities = 108/388 (28%), Positives = 175/388 (45%), Gaps = 85/388 (22%)

Query  256  VALSKAPDGYIVKSQHSGN--------AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIK  307
            + L+  P   I +SQ SG         A +++   L   P+ L + P+ ELA QT   ++
Sbjct  130  MMLAHPPQNLIAQSQ-SGTGKTAAFVLAMLSRVNALELFPQCLCLAPTYELALQTGRVVE  188

Query  308  QFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDI----VVGTPGRLDDLVSTGKL-NLS  362
            Q  K+  + ++  +  I G       + +  G DI    ++GTPG + D     KL +L+
Sbjct  189  QMGKFCVDVQV--MYAIRG-------NRIPRGTDITKQIIIGTPGTVLDWCFKLKLIDLT  239

Query  363  QVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEK  421
            ++R  VLDEAD ++ +QG+SD   R+   +P         Q+++ SAT     V   +E+
Sbjct  240  KIRVFVLDEADVMIDTQGFSDHSIRIQRALP------SECQMLLFSATFED-SVWHFAER  292

Query  422  IMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANS  481
            I+  P  + L+ E+   + +    V        L E            H KD  +   N 
Sbjct  293  IIPDPNVIKLRKEELTLNNIRQYYV--------LCE------------HRKDKYQALCN-  331

Query  482  PEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFS  541
                      + G   +         QAIIFC+T+ +   L    IQ G       HQ S
Sbjct  332  ----------IYGSITI--------GQAIIFCQTRRNAKWLTVEMIQDG-------HQVS  366

Query  542  CVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEK-----  596
               L G+    +R   ++RF+ G  + LI T+V ARGID+  V  V+N  LP ++     
Sbjct  367  L--LSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPD  424

Query  597  -QNYVHRIGRVGRAERMGLAISLVATEK  623
             + Y+HRIGR GR  + GLA +++  ++
Sbjct  425  YETYLHRIGRTGRFGKKGLAFNMIEVDE  452


>sp|Q6BME5|SUB2_DEBHA ATP-dependent RNA helicase SUB2 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=SUB2 PE=3 SV=2
Length=435

 Score = 106 bits (264),  Expect = 5e-23, Method: Compositional matrix adjust.
 Identities = 99/355 (28%), Positives = 159/355 (45%), Gaps = 59/355 (17%)

Query  283  LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG---  339
            +P     L++  +RELA Q  N   +F KY+  P ++  +  GG      L  L+N    
Sbjct  116  VPGEISTLVICHTRELAYQIRNEYARFSKYM--PDVKTEVFYGGTPITRDLEKLKNKDTC  173

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
              IVV TPGRL  LV+   + L+ ++  V+DE D +L    +  + R    I + T   K
Sbjct  174  PHIVVATPGRLHALVTEKSIRLNNIKSFVIDECDKVLE---AVDMRRDVQDIFRNTPHQK  230

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              QV++ SATL S +++ + +K M  P  +++  +D    T+H                L
Sbjct  231  --QVMMFSATL-SQEIRPVCKKFMQNP--LEIYVDDEAKLTLHG---------------L  270

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
             + +I+ D+   K+  R         S+ +  L+             +Q IIF R+    
Sbjct  271  QQYYIKLDE---KEKNRK-------LSDLLDSLE------------FNQVIIFVRSTQRA  308

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            + L +               F  + +H      ER +  + FK+ + R  + TDV  RGI
Sbjct  309  NELNKLLCSSN---------FPSIAVHSGLPQEERIERYKSFKEFNKRICVSTDVFGRGI  359

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            DI  +   IN  LP+E   Y+HR+GR GR    GLA+SLV+T+ ++       SR
Sbjct  360  DIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLAVSLVSTKDDEEVLEKIQSR  414


 Score = 40.0 bits (92),  Expect = 0.064, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 34/59 (58%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +  + PE+ +A+ +  +  P+++Q   IP  + G DVL  A++G GKT  F +  +Q
Sbjct  53   FRDFLLKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQ  111


>sp|Q86IZ9|DDX52_DICDI Probable ATP-dependent RNA helicase ddx52 
OS=Dictyostelium discoideum OX=44689 GN=ddx52 PE=3 SV=1
Length=668

 Score = 108 bits (269),  Expect = 5e-23, Method: Compositional matrix adjust.
 Identities = 86/332 (26%), Positives = 149/332 (45%), Gaps = 59/332 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +++I+ P+RELA+Q   N +   K       R  ++   +  +     L    DI++ TP
Sbjct  270  RSVIIAPTRELAQQIYRNFRLLSK---GKPFRICVLSKNLHNQSTNENLIKNYDILITTP  326

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
             RL  L+    L+L++V +LV DEAD L  + + + ++     I        +L++ + S
Sbjct  327  LRLVYLIKENLLSLNKVEYLVFDEADKLFDKNFQEQVD-----IVVTACQNPKLKICLFS  381

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT++   V++L   IM  P  + +  +++   TV   ++ V  +  +L            
Sbjct  382  ATMNQ-QVEELGHSIMKNPIKIIIGEQNAAAITVDQKLIYVGKEEGKLL-----------  429

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAI-IFCRTKIDCDNLEQYF  526
                                         AVR + +  ++  I IF ++K    +L Q  
Sbjct  430  -----------------------------AVRQLIQKGLEPPILIFTQSKERAHDLFQEL  460

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
            I  G   D          +H +R   +R   +++F+ G +  LICT++ ARG+D  GV +
Sbjct  461  IFDGINVD---------VIHSERTQFQRDTIVKKFRMGKIWVLICTELMARGMDFKGVNF  511

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            VIN   P    +Y+HRIGR GRA R G+A +L
Sbjct  512  VINFDFPHTLASYIHRIGRTGRAGRPGVAYTL  543


 Score = 54.3 bits (129),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 4/74 (5%)

Query  1    MAAFSEM----GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
            M  FS++     V   +   + E+ +  P+ IQ + IP++L   +V+  A TGSGKT +F
Sbjct  194  MTEFSQLENRFKVRKYLLNNINEIGYKEPSPIQMQVIPILLKEREVVAIAPTGSGKTASF  253

Query  57   SIPVIQIVYETLKD  70
            SIP++Q +YE  K+
Sbjct  254  SIPILQALYEPKKE  267


>sp|A4RGU2|DBP4_PYRO7 ATP-dependent RNA helicase DBP4 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=DBP4 PE=3 SV=1
Length=798

 Score = 108 bits (270),  Expect = 5e-23, Method: Compositional matrix adjust.
 Identities = 92/341 (27%), Positives = 149/341 (44%), Gaps = 65/341 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            AL++ P+RELA QT   +++  ++         L+IGG + R++   L   ++I++GTPG
Sbjct  124  ALVLSPTRELAVQTFQVLRKIGRH---HLFSAGLVIGGKSVREEAEALSR-MNILIGTPG  179

Query  349  R-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            R L  L  T   ++  ++ LVLDEAD ++  G+   ++ +   +P         Q ++ S
Sbjct  180  RILQHLDQTHGFDVDNLQLLVLDEADRIMDLGFQRDVDALVQHLPTTR------QTLLFS  233

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGE--DSVPDTV--HHVVVPVNPKTDRLWERLGKSH  463
            AT  S  V  L+   +  P +V +  E   + P T+  H++V P+  K D LW       
Sbjct  234  AT-QSKKVSDLARLSLKDPEYVSVHAEATTATPSTLQQHYIVTPLPEKLDTLW-------  285

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                          G     + S+ +  L     VR +                     E
Sbjct  286  --------------GFIKANLKSKMVVFLSSGKQVRFV--------------------YE  311

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +   Q G P         + +HG +K   R    +RF       L  TDV ARGID  G
Sbjct  312  SFRQMQPGIP--------LLHMHGRQKQLARLDVTKRFDSSKHACLFATDVIARGIDFTG  363

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            V +V+ V  P++  +Y+HR+GR  R ER G A+  +   +E
Sbjct  364  VDWVVQVDAPEDTDDYIHRVGRTARYEREGKAVIFLDPSEE  404


 Score = 58.9 bits (141),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 0/63 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            AF+E+ +    A+ V +  +   TDIQA +IPL L G D+L AA+TGSGKT AF +P+++
Sbjct  50   AFAELPLSEPTAKGVRDSHFETLTDIQARAIPLALKGRDILGAAKTGSGKTLAFLVPLLE  109

Query  63   IVY  65
             +Y
Sbjct  110  KLY  112


>sp|Q9SA27|RH36_ARATH DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis 
thaliana OX=3702 GN=RH36 PE=2 SV=1
Length=491

 Score = 106 bits (265),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 103/368 (28%), Positives = 161/368 (44%), Gaps = 69/368 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            AL+V P+RELA Q     +QFK       LR  +I+GG+    Q   L +   IV+ TPG
Sbjct  129  ALVVTPTRELAFQL---AEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPG  185

Query  349  RLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            R+  L+          S+ +FLVLDEAD +L  G+ D +  +   +P      K  Q ++
Sbjct  186  RIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLP------KSRQTLL  239

Query  406  CSATLHSFDVKKL----SEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK  461
             SAT+ S +++ L    S K   +  +  LK  D+                      L +
Sbjct  240  FSATMTS-NLQALLEHSSNKAYFYEAYEGLKTVDT----------------------LTQ  276

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
              I  D            ++ E++   + IL        +++  +  A+IF  T   C  
Sbjct  277  QFIFEDK-----------DAKELY--LVHILS------QMEDKGIRSAMIFVSTCRTCQR  317

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            L     +          +   + +H       R   L +FK G V  L+ TDVA+RG+DI
Sbjct  318  LSLMLDEL---------EVENIAMHSLNSQSMRLSALSKFKSGKVPILLATDVASRGLDI  368

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGC--Y  639
              V  VIN  +P + ++YVHR+GR  RA R GLA+S++     K+ + +    GK    Y
Sbjct  369  PTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLIHKIEEEVGKKMEPY  428

Query  640  NTRLKEDG  647
            N ++  D 
Sbjct  429  NKKVITDS  436


 Score = 50.4 bits (119),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (59%), Gaps = 0/63 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F  +G+     +  +E+    PT +Q   +P IL G DVL  A+TGSGKT AF++P++  
Sbjct  60   FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHR  119

Query  64   VYE  66
            + E
Sbjct  120  LAE  122


>sp|A7EIX7|SUB2_SCLS1 ATP-dependent RNA helicase sub2 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=sub2 PE=3 SV=1
Length=444

 Score = 105 bits (263),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 155/352 (44%), Gaps = 59/352 (17%)

Query  277  VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL  336
            + Q + +      L++  +RELA Q  N  ++F  ++  P ++  +  GGV     + VL
Sbjct  118  LQQVEVVAGETSVLVMCHTRELAYQIRNEYQRFCHFM--PDVKIGVFYGGVPISKDVEVL  175

Query  337  ENGVD---IVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ  393
            +N      I+VGTPGRL+ LV    L L+ V+  VLDE D +L Q     + R   +I +
Sbjct  176  KNPETHPHIIVGTPGRLNALVRDKYLRLNSVKVFVLDECDKMLDQID---MRRDVQEIFR  232

Query  394  VTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTD  453
             T   K  QV++ SATL S +V+ + +K M  P  + +  E                 T 
Sbjct  233  ATPPQK--QVMMFSATL-SQEVRPICKKFMQNPLEIYIDNE-----------------TK  272

Query  454  RLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFC  513
                 L + +I+ ++   + N R                        + E   +Q IIF 
Sbjct  273  LTLYGLQQYYIKLEE--REKNRRLN--------------------ELLDELSFNQVIIFV  310

Query  514  RTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTD  573
            ++ +    L++           +   F  V +H      ER +    FK  + R  + TD
Sbjct  311  KSTVRATELDKLL---------RECNFPSVAIHSGVSQEERIKRFNDFKDFNKRICVATD  361

Query  574  VAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            V  RGID++ +   IN  LP +  +Y+HR+GR GR    GLAIS V+ E ++
Sbjct  362  VFGRGIDVNKINLAINYDLPPDADSYLHRVGRAGRFGTKGLAISFVSNEADQ  413


 Score = 41.2 bits (95),  Expect = 0.032, Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (56%), Gaps = 0/61 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F E  + PE+ +A+    +  P+++Q   IP  + G DVL  A++G GKT  F +  +Q 
Sbjct  61   FREFLLKPELLRAISWCGFEHPSEVQQVCIPQAILGTDVLCQAKSGLGKTAVFVLTTLQQ  120

Query  64   V  64
            V
Sbjct  121  V  121


>sp|Q4WMS3|MAK5_ASPFU ATP-dependent RNA helicase mak5 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=mak5 PE=3 SV=2
Length=777

 Score = 108 bits (269),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 164/374 (44%), Gaps = 48/374 (13%)

Query  265  YIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
            Y+ K +   +AQ  Q     + P ALI+ P+RELA Q   +I +          R  L+ 
Sbjct  263  YLEKKRDDISAQKEQMSEKDSTPIALILSPTRELAHQLSKHIGELIAQAPGVNARIALLT  322

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYS  381
            GG++ + Q  +L +G DIV+GTPGR+ +++STG+     + Q++FLV+DEAD LLS+G+ 
Sbjct  323  GGLSVQKQQRLL-SGADIVIGTPGRVWEILSTGQGLIRKMQQIKFLVVDEADRLLSEGHF  381

Query  382  DFINRMHNQIPQV----TSDGK------------RLQVIVCSATLHSFDVKKLSEKIMHF  425
              +  + N + +V      DG+              Q +V SAT H    + L +K+   
Sbjct  382  KEVEEILNSLDRVEDGEVPDGEDQASEEESDPSSERQTLVFSATFH----RDLQQKLAGK  437

Query  426  PTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW  485
              W   +G+          ++      D L ++L     +   +     ++   N  E  
Sbjct  438  RKWT--RGD----------IMDKKESMDYLLQKLNFREEKPKFIDMNPISQMADNLKEGI  485

Query  486  SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL  545
             E   + K  +    +  H   + ++F  + I         +Q    P         + L
Sbjct  486  VECGAMEKDLFLYTLLLYHPKHRTLVFTNS-ISAVRRLTKLLQTLQLP--------ALAL  536

Query  546  HGDRKPHERKQNLERFKKGD---VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHR  602
            H       R +++ERF          LI TDVAARG+DI G+  VI+   P     YVHR
Sbjct  537  HSSMAQKARLRSVERFSSPSSDPSTILIATDVAARGLDIKGIDLVIHYHAPRTADTYVHR  596

Query  603  IGRVGRAERMGLAI  616
             GR  RA   G ++
Sbjct  597  SGRTARAGASGKSV  610


 Score = 58.2 bits (139),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 31/82 (38%), Positives = 48/82 (59%), Gaps = 0/82 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++A+  +G+ PEI   + +M +  PT +Q   IP IL G DV+  A TGSGKT AF IP+
Sbjct  200  VSAWDSLGLSPEILTGLSKMKFGSPTSVQEACIPQILEGHDVIGKASTGSGKTLAFGIPI  259

Query  61   IQIVYETLKDQQEGKKGKTTIK  82
            ++   E  +D    +K + + K
Sbjct  260  LEHYLEKKRDDISAQKEQMSEK  281


>sp|Q0CDT1|DBP5_ASPTN ATP-dependent RNA helicase dbp5 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dbp5 
PE=3 SV=1
Length=487

 Score = 106 bits (264),  Expect = 7e-23, Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 157/361 (43%), Gaps = 80/361 (22%)

Query  280  TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG-GVAARDQLSVLEN  338
            T+ +   P+ALI+ P+RELA Q +  I+   +++DN      LIIG  V A         
Sbjct  146  TEQMQKTPQALILAPTRELARQIVGVIQVMGQFLDN------LIIGTAVPADTNNRPARM  199

Query  339  GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVTSD  397
               +VVGTPG + D++    +  ++++ LVLDEAD +L  QG  D   R+   +P     
Sbjct  200  EASVVVGTPGTVMDMIKKRIMVPAKLQVLVLDEADNMLDQQGLGDQCIRVKALLP-----  254

Query  398  GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLW-  456
             + +QV++ SAT               FPT V            H       P+ + L  
Sbjct  255  -RTIQVVLFSAT---------------FPTHV------------HQYASKFAPQANELTL  286

Query  457  --ERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
              E L    I+   +   D             +  + L   Y +  +       +IIF +
Sbjct  287  QHEELTVEGIKQLYLDCSDE-----------EDKYRTLVSLYGLLTVGS-----SIIFVK  330

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
            T+     +E+  + +G          +   L G  +  +R   +++F+ G  + LI T+V
Sbjct  331  TRQSAMEIEKRMVAEG---------HTVASLTGGIEGSQRDAVIDQFRAGAAKVLITTNV  381

Query  575  AARGIDIHGVPYVINVTLPD-----------EKQNYVHRIGRVGRAERMGLAISLVATEK  623
             ARGID+  V  VIN  +P+           + Q Y+HRIGR GR  R+G++IS V+   
Sbjct  382  LARGIDVSTVSMVINYDIPELHLPPNQPRQADFQTYLHRIGRTGRFGRVGVSISFVSNRD  441

Query  624  E  624
            E
Sbjct  442  E  442


 Score = 40.8 bits (94),  Expect = 0.040, Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 38/60 (63%), Gaps = 2/60 (3%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSIPVI  61
            F ++G+ P I Q +  M++  P+ IQ  ++PL+L     +++  +++G+GKT AF + ++
Sbjct  80   FEDLGLDPRILQGLSAMNFRKPSKIQERALPLLLSNPPKNLVGQSQSGTGKTAAFVLNIL  139


>sp|P21372|PRP5_YEAST Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Saccharomyces cerevisiae (strain ATCC 204508 
/ S288c) OX=559292 GN=PRP5 PE=1 SV=1
Length=849

 Score = 108 bits (269),  Expect = 7e-23, Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 157/347 (45%), Gaps = 62/347 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P  LI+ P+RELA Q    + +F +   +  +R +   GG   + Q++ L+ G +IVV T
Sbjct  331  PMGLILAPTRELALQIHEEVTKFTEA--DTSIRSVCCTGGSEMKKQITDLKRGTEIVVAT  388

Query  347  PGRLDDLVST--GKL-NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL--  401
            PGR  D+++   GKL +  ++ F+V+DEAD L   G+           PQ+T   K +  
Sbjct  389  PGRFIDILTLNDGKLLSTKRITFVVMDEADRLFDLGFE----------PQITQIMKTVRP  438

Query  402  --QVIVCSAT----LHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHH---VVVPVNPKT  452
              Q ++ SAT    L SF V+     ++H P  + +  +  V + V     +    + K 
Sbjct  439  DKQCVLFSATFPNKLRSFAVR-----VLHSPISITINSKGMVNENVKQKFRICHSEDEKF  493

Query  453  DRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF  512
            D L + + +     D+V ++++   G +S     +A                   +AIIF
Sbjct  494  DNLVQLIHERSEFFDEVQSEND---GQSSDVEEVDA-------------------KAIIF  531

Query  513  CRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICT  572
              ++  CD + +  +  G              +H  +   ER  NLE+FK+     L+CT
Sbjct  532  VSSQNICDFISKKLLNAG---------IVTCAIHAGKPYQERLMNLEKFKREKNSILLCT  582

Query  573  DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +V +RG+++  V  VI          YVH  GR  R  R G AI+L+
Sbjct  583  EVLSRGLNVPEVSLVIIYNAVKTFAQYVHTTGRTARGSRSGTAITLL  629


 Score = 39.3 bits (90),  Expect = 0.15, Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 30/39 (77%), Gaps = 0/39 (0%)

Query  26   TDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIV  64
            T IQ++++P I+ G DV+  ++TGSGKT ++ +P+++ V
Sbjct  280  TPIQSQALPAIMSGRDVIGISKTGSGKTISYLLPLLRQV  318


>sp|Q2TBP1|DDX25_BOVIN ATP-dependent RNA helicase DDX25 OS=Bos 
taurus OX=9913 GN=DDX25 PE=2 SV=1
Length=483

 Score = 106 bits (264),  Expect = 8e-23, Method: Compositional matrix adjust.
 Identities = 113/441 (26%), Positives = 186/441 (42%), Gaps = 117/441 (27%)

Query  256  VALSKAPDGYIVKSQHSGN--------AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIK  307
            + L+  P   I +SQ SG         A +++   L   P+ L + P+ ELA QT   ++
Sbjct  130  MMLAHPPQNLIAQSQ-SGTGKTAAFVLAMLSRVNALKLFPQCLCLAPTYELALQTGRVVE  188

Query  308  QFKKYIDNPKLRELLIIGGVAARDQLSVLENGVD----IVVGTPGRLDDLVSTGKL-NLS  362
            +  K+  + ++  +  I G       + +  G D    IV+GTPG + D     KL +L+
Sbjct  189  RMGKFCVDVQV--MYAIRG-------NRIPRGTDVTKQIVIGTPGTVLDWCFKRKLIDLT  239

Query  363  QVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEK  421
            ++R  VLDEAD ++ +QG+ D   R+   +P         Q+++ SAT     V + +E+
Sbjct  240  KIRVFVLDEADVMIDTQGFEDQSIRIQRALP------SECQMLLFSATFED-SVWQFAER  292

Query  422  IMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANS  481
            I+  P  + L+ E+   + +    V                  R D   A  N   G   
Sbjct  293  IIPDPNVIKLRKEELTLNNIRQYYVLCGN--------------RKDKYQALCNIYGGIT-  337

Query  482  PEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFS  541
                                    + QAIIFC+T+ +   L    +Q G       HQ S
Sbjct  338  ------------------------IGQAIIFCQTRRNAKWLTVEMMQDG-------HQVS  366

Query  542  CVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP------DE  595
               L G+    +R   ++RF+ G  + LI T+V ARGID+  V  V+N  LP       +
Sbjct  367  L--LSGELTVDQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVNQAEEPD  424

Query  596  KQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNE  655
             + Y+HRIGR GR  + GLA +++  +K                                
Sbjct  425  YETYLHRIGRTGRFGKKGLAFNMIEVDK--------------------------------  452

Query  656  MQLLSEIEEHLNCTISQVEPD  676
            + LL +I++H N +I Q++P+
Sbjct  453  LPLLMKIQDHFNSSIKQLDPE  473


>sp|Q0DVX2|RH50_ORYSJ DEAD-box ATP-dependent RNA helicase 50 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os03g0108600 PE=2 
SV=2
Length=641

 Score = 107 bits (267),  Expect = 8e-23, Method: Compositional matrix adjust.
 Identities = 87/328 (27%), Positives = 135/328 (41%), Gaps = 43/328 (13%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P  P+ +++ P+ ELA Q LNN +   K       R ++  GG   + QL  L+  +D++
Sbjct  315  PRNPRVVVLTPTAELASQVLNNCRSISK--SGVPFRSMVATGGFRQKTQLESLDQELDVL  372

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            + TPGR   L+  G + L+ +R +VLDE D L   G   F   +H  I            
Sbjct  373  IATPGRFLYLLQEGFVQLNNLRCVVLDEVDILY--GEESFEQVLHQLI------------  418

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
                       V  L+ + +     + L   + V +T     + + P   R   RL +  
Sbjct  419  ----------TVAPLTTQYLFVTATLPLDIYNKVVETFPDCELIMGPGVHRTSSRLEEIL  468

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
            +   D    DN        E   E     K    V+ I+E  + + IIFC     C  +E
Sbjct  469  V---DCSGDDNE-------EKNPETAFSNKKSALVKIIEESPVRKTIIFCNKIETCRKVE  518

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF---KKGDVRFLICTDVAARGID  580
                +     D+K  Q   +  H      +R  N++ F   +  D  FL+CTD A+RGID
Sbjct  519  NALRRV----DRKASQIKVLPFHAALDQQQRIANIKEFLNKQTADSMFLVCTDRASRGID  574

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGR  608
               V +V+    P +   YV R+GR  R
Sbjct  575  FANVNHVVLFDYPRDPSEYVRRVGRTAR  602


 Score = 41.2 bits (95),  Expect = 0.035, Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 34/60 (57%), Gaps = 0/60 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F E+G   EI  A+    +  P+ IQA +   +L G   ++  ++GSGKT A+  PV+Q
Sbjct  241  SFKEIGCSDEILGALRSFGFPRPSHIQAMAYRPVLEGKSCIIGDQSGSGKTLAYLCPVVQ  300


>sp|A6ZLH6|PRP5_YEAS7 Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 
GN=PRP5 PE=3 SV=1
Length=849

 Score = 107 bits (268),  Expect = 8e-23, Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 157/347 (45%), Gaps = 62/347 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P  LI+ P+RELA Q    + +F +   +  +R +   GG   + Q++ L+ G +IVV T
Sbjct  331  PMGLILAPTRELALQIHEEVTKFTEA--DTSIRSVCCTGGSEMKKQITDLKRGTEIVVAT  388

Query  347  PGRLDDLVST--GKL-NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL--  401
            PGR  D+++   GKL +  ++ F+V+DEAD L   G+           PQ+T   K +  
Sbjct  389  PGRFIDILTLNDGKLLSTKRITFVVMDEADRLFDLGFE----------PQITQIMKTVRP  438

Query  402  --QVIVCSAT----LHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHH---VVVPVNPKT  452
              Q ++ SAT    L SF V+     ++H P  + +  +  V + V     +    + K 
Sbjct  439  DKQCVLFSATFPNKLRSFAVR-----VLHSPISITINSKGMVNENVKQKFRICHSEDEKF  493

Query  453  DRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF  512
            D L + + +     D+V ++++   G +S     +A                   +AIIF
Sbjct  494  DNLVQLIHERSEFFDEVQSEND---GQSSDVEEVDA-------------------KAIIF  531

Query  513  CRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICT  572
              ++  CD + +  +  G              +H  +   ER  NLE+FK+     L+CT
Sbjct  532  VSSQNICDFISKKLLNAG---------IVTCAIHAGKPYQERLMNLEKFKREKNSILLCT  582

Query  573  DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +V +RG+++  V  VI          YVH  GR  R  R G AI+L+
Sbjct  583  EVLSRGLNVPEVSLVIIYNAVKTFAQYVHTTGRTARGSRSGTAITLL  629


 Score = 39.3 bits (90),  Expect = 0.15, Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 30/39 (77%), Gaps = 0/39 (0%)

Query  26   TDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIV  64
            T IQ++++P I+ G DV+  ++TGSGKT ++ +P+++ V
Sbjct  280  TPIQSQALPAIMSGRDVIGISKTGSGKTISYLLPLLRQV  318


>sp|A3LP87|DBP8_PICST ATP-dependent RNA helicase DBP8 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DBP8 PE=3 SV=2
Length=445

 Score = 105 bits (263),  Expect = 8e-23, Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 161/346 (47%), Gaps = 75/346 (22%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR  349
            L++ P+RELA   L   +QF     +  ++  +++GG     Q   L+     V+ TPGR
Sbjct  73   LVLTPTRELA---LQIAEQFAALGASMNIKISVVVGGEDFVKQTLELQKKPHFVIATPGR  129

Query  350  LDD-LVSTGKLNLS---QVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            L D ++++G+  +S   ++++LVLDEAD LLS  +   + R  + +P      ++ Q  +
Sbjct  130  LADHILNSGEETISGLRRIKYLVLDEADRLLSNSFGGDLERCFSVLPP----SEKRQTCL  185

Query  406  CSATLHSFDVKKLSEK---------IMHFPTWVDLKGEDSVPDT--VHHVVVPVNPKTDR  454
             +AT+    V+ L EK          +H    VD   + ++P T  + +V VP       
Sbjct  186  FTATVTD-AVRALKEKPPAQGKPPVFLHEVETVD---QVAIPSTLSIKYVFVP-------  234

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
                   S+++   +++                   IL+       + +++   A+IF  
Sbjct  235  -------SYVKEAYLNS-------------------ILR-------LPQYEKSTAVIFVN  261

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
                 + L +           +  +F    LH +    ER  +++RFK G  R LI TDV
Sbjct  262  RTTTAEVLRRTL---------RKLEFRVASLHSEMPQSERTNSVQRFKAGAARILIATDV  312

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            A+RG+DI  V  V+N  +P +  +++HR+GR  RA R G A++++A
Sbjct  313  ASRGLDIPSVELVVNFDIPADPDDFIHRVGRTARAGRSGDAVTIIA  358


 Score = 48.1 bits (113),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 0/59 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
           +F ++GV   +++A+  M    PT IQ+  IP IL G D +  A+TGSGKT AF+ P++
Sbjct  2   SFEDLGVSRWLSEALAAMKIHTPTAIQSGCIPKILSGHDCIGGAKTGSGKTIAFAAPML  60


>sp|A4RGD1|RRP3_PYRO7 ATP-dependent rRNA helicase RRP3 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=RRP3 PE=3 SV=1
Length=538

 Score = 106 bits (264),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 110/419 (26%), Positives = 172/419 (41%), Gaps = 68/419 (16%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR  349
            L++ P+RELA Q     +     I    LR  +++GG+    Q + L     IVV TPGR
Sbjct  182  LVLAPTRELAAQIGQTFEALGASIS---LRCAVVVGGLDMVSQSTALGKKPHIVVATPGR  238

Query  350  L-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSA  408
            L D L  T   +L  ++FLV+DEAD LL   +   ++++   +P      +  +  + SA
Sbjct  239  LLDHLEKTKGFSLRSLKFLVMDEADRLLDLDFGPILDKILKFLP------RERRTFLFSA  292

Query  409  TLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDD  468
            T+ S  V+ L    +  P  V +    S   TV  ++   NP        L   H +  D
Sbjct  293  TMSS-KVESLQRASLRDPLKVSVSS--SQEKTVSTLIQ--NP--------LFIPH-KHKD  338

Query  469  VHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQ  528
            V+                  +  L  E+A +          I+F RT  +   +      
Sbjct  339  VY------------------LIYLANEFAGKT--------TIVFTRTVNEAQRVSILL--  370

Query  529  QGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVI  588
                   +   F  + LHG      R   L +FK      L+ TDVAARG+DI  V  VI
Sbjct  371  -------RTLSFGAIPLHGQLSQSMRLGALNKFKARSRDILVATDVAARGLDIPEVDLVI  423

Query  589  NVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGG  648
            N  +P +   Y+HR+GR  RA R G AIS++     ++W  +  +   G      + D  
Sbjct  424  NFDMPQDSMTYIHRVGRTARAGRSGRAISIITQYDLELWLRIEKAALNGRKLPLFQPDKE  483

Query  649  CTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDI  707
              + + E   + E + H    +  +  D         G V  G+KR  G  + + H D+
Sbjct  484  EVMVFKER--VEEAQRHAREEMKALHED-----RGKKGAVLKGRKR--GSATKRRHDDM  533


 Score = 63.2 bits (152),  Expect = 5e-09, Method: Compositional matrix adjust.
 Identities = 28/64 (44%), Positives = 45/64 (70%), Gaps = 0/64 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F ++G++  + +A E + +  PT IQ ++IPL L G DV+  AETGSGKT AF++P++Q
Sbjct  111  SFRDLGIVEPLCEACEALKFKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPILQ  170

Query  63   IVYE  66
             + E
Sbjct  171  SLLE  174


>sp|A5DZT7|DBP10_LODEL ATP-dependent RNA helicase DBP10 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP10 PE=3 SV=1
Length=948

 Score = 107 bits (268),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 99/361 (27%), Positives = 164/361 (45%), Gaps = 49/361 (14%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P+  +A+I+ PSRELA QT   +K+F    +   L+ +++IGG +  +    +    DI+
Sbjct  188  PSGVRAVILSPSRELALQTYKQVKEFSHGTN---LQSIVLIGGDSLEEDFGKMMTKPDII  244

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            V TPGR   L    + +L  V+++V DEAD L   G+++ +N +   +P         Q 
Sbjct  245  VCTPGRFLHLKVEMQYDLMSVQYIVFDEADRLFEMGFAEQLNELLLALPS------NRQS  298

Query  404  IVCSATLHSFDVK------------------KLSEKI-MHFPTWVDLKGEDSVPDTVHHV  444
            ++ SATL    V+                  KLSE + M + T    + E ++   +  V
Sbjct  299  LLFSATLPRSLVEFAKAGLTNPVLVRLDADSKLSENLQMAYFTTKRNEREANLLYILQEV  358

Query  445  V-VPV-NPKTDRLWERLGKSHIRTDDVH--AKDNTRPGANSPEMWSEAIKILKGEYAVRA  500
            + +P+  P+  +    + K  I +D+ +  AK+         +   E +       + + 
Sbjct  359  IKMPLGTPEEVKKLAAMDKRSIESDEENEEAKEQNNGKKRKYKFKKERMP------SAKE  412

Query  501  IKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLER  560
            +   K    IIF  TK   + +       G         +    ++G    H RK  L  
Sbjct  413  LPSEK--STIIFVPTKHHVEYVTSLLKDAG---------YLVSYIYGTLDQHARKNQLYL  461

Query  561  FKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            F+ G  + L+ TDVAARGIDI  +  VIN TLP   + ++HR+GR  RA   G A S+V 
Sbjct  462  FRIGLTKILVVTDVAARGIDIPVLANVINFTLPGSSKIFIHRVGRTARAGNKGWAYSIVN  521

Query  621  T  621
            +
Sbjct  522  S  522


 Score = 49.3 bits (116),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 0/60 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F+  G    +   + +  +  PT IQ  SIPLI+   DV+  A TGSGKT AF +P+I+
Sbjct  122  SFASFGFSKFLLANIAKKGYKQPTPIQRRSIPLIIDNRDVVGMARTGSGKTAAFVLPLIE  181


>sp|Q9VIF6|DDX47_DROME ATP-dependent RNA helicase DDX47 OS=Drosophila 
melanogaster OX=7227 GN=pths PE=1 SV=1
Length=507

 Score = 106 bits (264),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 95/367 (26%), Positives = 165/367 (45%), Gaps = 66/367 (18%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P    AL++ P+RELA Q     +QF+       ++  +++GG+    Q   L     I+
Sbjct  127  PQRYFALVLTPTRELAFQI---GEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHII  183

Query  344  VGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            + TPGRL D L +    NL  +++LV+DEAD +L+  +   ++++   +P      +  +
Sbjct  184  IATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLP------RERR  237

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH--HVVVPVNPKTDRLWERLG  460
              + SAT+ +  VKKL    +  P  V++  +    + +   ++ +PV  K         
Sbjct  238  TFLFSATM-TKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYK---------  287

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
                   DV                          Y V  + E   +  +IFC T   C+
Sbjct  288  -------DV--------------------------YLVHILNELAGNSFMIFCST---CN  311

Query  521  N-LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            N ++   + +  G        + + LHG    ++R   L +FK  +   LI TDVA+RG+
Sbjct  312  NTVKTALMLRALG-------LAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGL  364

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCY  639
            DI  V  V+N  +P   ++Y+HR+GR  RA R G AI+LV+    +++  +    GK   
Sbjct  365  DIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEHLLGKQLT  424

Query  640  NTRLKED  646
              + +ED
Sbjct  425  LYKCEED  431


 Score = 65.5 bits (158),  Expect = 9e-10, Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 44/63 (70%), Gaps = 0/63 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            + ++G+   + QA +E+ W  P+ IQ E+IP+ L G DV+  AETGSGKTGAF++P++  
Sbjct  63   WKDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHA  122

Query  64   VYE  66
            + E
Sbjct  123  LLE  125


>sp|Q4I662|DBP8_GIBZE ATP-dependent RNA helicase DBP8 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=DBP8 PE=3 SV=1
Length=547

 Score = 106 bits (264),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 104/397 (26%), Positives = 167/397 (42%), Gaps = 65/397 (16%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P A  A+++ P+RELA Q     +QFK       L+ +L+ GG   R Q   +     ++
Sbjct  182  PTAIFAVVLTPTRELALQIF---EQFKAISSPQSLKAILVTGGSDMRTQAIEIGKRPHVI  238

Query  344  VGTPGRLDDLVSTGKLN----LSQVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVTSDG  398
            + TPGRL D + T   +    L +VR++VLDEAD LL + G    +  +   +  +    
Sbjct  239  IATPGRLADHIRTSGEDTICGLRRVRYVVLDEADRLLNATGPGSMLPDVEECLSVLPPAT  298

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER  458
            +R Q ++ +AT+ + +V+ L +                         +P+ P        
Sbjct  299  ER-QTLLFTATI-TPEVRALKD-------------------------MPIKP--------  323

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYA-VRAIKEHKMDQAII-FCRTK  516
             GK  +   +V  +    P A   +M+ +     K  Y     + E  +D+ +I FC   
Sbjct  324  -GKQPVFVCEVDTQTLAIP-ATLKQMYIKVPVTHKEHYLHTFLLTEANVDKTVILFCNRT  381

Query  517  IDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAA  576
               D L             +  +     LH      +R  NL RF+    R L+ TDVAA
Sbjct  382  STADYLHHLL---------RMLEHRVTSLHSKLPQRQRIDNLARFRASAARILVATDVAA  432

Query  577  RGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGK  636
            RG+DI  V  VIN  LP +  +Y+HR+GR  RA R G A+S V     ++   +    G+
Sbjct  433  RGLDIPEVSLVINYDLPRDPDDYIHRVGRTARAGRKGEAVSFVGQRDVELALTIEKRVGR  492

Query  637  GC---------YNTRLKEDGGCTIWYNEMQLLSEIEE  664
                         TR+  D    +   + + L E+EE
Sbjct  493  DMEAWEEEGVNLETRVVRDALKLVSEKKREALLEVEE  529


 Score = 53.9 bits (128),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 27/59 (46%), Positives = 37/59 (63%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            FS + V P + Q++E M    PT IQ   IP IL G D +  + TGSGKT AF++P++Q
Sbjct  118  FSALDVRPWLVQSLENMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTMAFAVPILQ  176


>sp|Q0TXZ2|SUB2_PHANO ATP-dependent RNA helicase SUB2 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=SUB2 PE=3 SV=1
Length=438

 Score = 105 bits (261),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 88/355 (25%), Positives = 154/355 (43%), Gaps = 61/355 (17%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG---V  340
            P     L++  +RELA Q  N   +F K++  P ++  +  GG      + +L N     
Sbjct  120  PGVASILVMCHTRELAYQIRNEYNRFAKFL--PDVKVGVFYGGTPVAKDIELLSNKDTHP  177

Query  341  DIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV-TSDGK  399
             I+VGTPGR++ LV    L L+ ++  VLDE D +L Q        M N +  +  +   
Sbjct  178  HIIVGTPGRINALVRDRHLRLANLKHFVLDECDKMLDQP------DMRNDVQAIFRATPA  231

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              QV++ SATL S +++ + +K M  P  + +  E  +  T+H                L
Sbjct  232  HKQVMMFSATL-SKEIRAVCKKFMQNPLEIYVDDEKKL--TLHG---------------L  273

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
             + +++ D+   ++  R   +                    +   + +Q IIF R+ + C
Sbjct  274  QQFYVKLDE---REKNRKLND-------------------LLDNLEFNQVIIFVRSTLRC  311

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
              L++           +   F    +H      ER +  + FK+   R  + TD+  RGI
Sbjct  312  TELDKLL---------RECNFPSTAVHSGIGQEERIKRYKEFKEFQTRICVSTDIFGRGI  362

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            D+  +   IN  +PD+   Y+HR+GR GR    GL+IS V+++ ++        R
Sbjct  363  DVERINVAINYDMPDKADAYLHRVGRAGRFGTKGLSISFVSSQDDEAVLKAIEER  417


 Score = 39.7 bits (91),  Expect = 0.096, Method: Compositional matrix adjust.
 Identities = 18/59 (31%), Positives = 34/59 (58%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +  +  E+ +A+ +  +  P+++Q  +IP  + G DVL  A++G GKT  F +  +Q
Sbjct  54   FRDFLLKDELVRAITDCGFEHPSEVQQVTIPQAILGNDVLCQAKSGLGKTAVFVLATLQ  112


>sp|Q81E85|CSHC_BACCR DEAD-box ATP-dependent RNA helicase CshC 
OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 
/ JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) 
OX=226900 GN=cshC PE=2 SV=1
Length=389

 Score = 104 bits (259),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 155/373 (42%), Gaps = 70/373 (19%)

Query  264  GYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLI  323
             Y++   H  N +V Q       P+ +++ P+REL  Q    ++   K+    ++    +
Sbjct  51   AYLLPLLHKINPEVKQ-------PQVVVLAPTRELVMQIHEEVQ---KFTAGTEISGASL  100

Query  324  IGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDF  383
            IGG   + Q+  L+    ++VG+PGR+ +L+   KL + +V+ +V DE D ++ Q     
Sbjct  101  IGGADIKRQVEKLKKHPRVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQ-----  155

Query  384  INRMHNQIPQVTSDGKR-LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH  442
              +M   +  V     R  Q++  SAT+                       ED+  D   
Sbjct  156  --KMMGAVQDVIKSTMRDRQLVFFSATMTK-------------------AAEDAARD---  191

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
               + V P+  R+     KS +        ++T       E         K +Y VR I 
Sbjct  192  ---LAVEPQLVRVTRAESKSLV--------EHTYIICERRE---------KNDY-VRRIM  230

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
                 +A+ F       D + +           K  +     LH +    ER+  +  F+
Sbjct  231  HMGDVKAVAFLNDPFRLDEITEKL---------KFRKMKAAALHAEASKQEREATMRAFR  281

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             G +  L+ TD+AARGIDI  + +VI++ LPD    Y+HR GR GR  + G  +SLV  +
Sbjct  282  GGKLEILLATDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTPQ  341

Query  623  KEKVWYHVCSSRG  635
            +E+         G
Sbjct  342  EERKLLQFAKKLG  354


 Score = 43.1 bits (100),  Expect = 0.008, Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 0/62 (0%)

Query  11  PEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKD  70
           P + QA E+  +   T+IQ ++IP IL G DV+  + TG+GKT A+ +P++  +   +K 
Sbjct  7   PFLQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKINPEVKQ  66

Query  71  QQ  72
            Q
Sbjct  67  PQ  68


>sp|Q6CDS6|ROK1_YARLI ATP-dependent RNA helicase ROK1 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=ROK1 PE=3 
SV=1
Length=547

 Score = 105 bits (263),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 95/341 (28%), Positives = 151/341 (44%), Gaps = 62/341 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPK--LRELLIIGGVAARDQL---SVLENGVDI  342
            KAL+V P++ELA Q  N +      +   K  L+  L+    A  D+L    V     DI
Sbjct  187  KALVVAPTKELASQIFNAVFSLCVGVGKKKDELKPCLLDKSTA--DKLRNGKVSSQKYDI  244

Query  343  VVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
             + TP RL   ++ G L+L  +  ++ DEAD L  +G++  ++ +    P        +Q
Sbjct  245  CITTPLRLVSALNDGSLDLGSLDLVIFDEADKLFEKGFATQVDDILAACPS------GIQ  298

Query  403  VIVCSATLHSFDVKKLSEKIMHF-PTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK  461
              + SAT+ +  V++L+  IM   P  + +  + +   TV   +V    +  +L      
Sbjct  299  KTLFSATIPA-SVEQLANSIMSTDPLRIIIGNKQAAAQTVEQKLVYAGNEEGKL------  351

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
                   V  +   R G    ++ +  I  L+     +A+          F     D  N
Sbjct  352  -------VAIRQMAREG----QLVAPVIIFLQSIDRAKAL----------FKELVFDGIN  390

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            ++Q                    +HGD    +R   ++RF+ G+V  LICTDV ARGID 
Sbjct  391  VDQ--------------------IHGDMTAAKRASVIDRFRNGEVWVLICTDVLARGIDF  430

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             G+  VIN  +P   Q+YVHRIGR GRA R+G A++    E
Sbjct  431  RGINLVINYDVPQSAQSYVHRIGRTGRAGRLGKAVTFFTKE  471


 Score = 51.2 bits (121),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 23/61 (38%), Positives = 39/61 (64%), Gaps = 0/61 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
             +   + P +   +++  +  PT IQ ESIP +L G D++  A TGSGKT A+SIP++++
Sbjct  113  ITRFNLHPYLLANLKKNKYTDPTPIQCESIPTMLNGRDLIACAPTGSGKTMAYSIPMVEM  172

Query  64   V  64
            +
Sbjct  173  L  173


>sp|Q9QY15|DDX25_MOUSE ATP-dependent RNA helicase DDX25 OS=Mus 
musculus OX=10090 GN=Ddx25 PE=1 SV=2
Length=484

 Score = 105 bits (262),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 114/437 (26%), Positives = 184/437 (42%), Gaps = 109/437 (25%)

Query  256  VALSKAPDGYIVKSQHSGN--------AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIK  307
            + L+  P   I +SQ SG         A +++   L   P+ L + P+ ELA QT   ++
Sbjct  131  MMLAHPPQNLIAQSQ-SGTGKTAAFVLAMLSRVNALELFPQCLCLAPTYELALQTGRVVE  189

Query  308  QFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKL-NLSQVRF  366
            +  K+  + ++    I G    R      E    I++GTPG + D     KL +L+++R 
Sbjct  190  RMGKFCVDVEVM-YAIRGNRIPRGT----EVTKQIIIGTPGTVLDWCFKRKLIDLTKIRV  244

Query  367  LVLDEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF  425
             VLDEAD ++ +QG+SD   R+   +P         Q+++ SAT     V + +E+I+  
Sbjct  245  FVLDEADVMIDTQGFSDQSIRIQRALP------SECQMLLFSATFED-SVWQFAERIIPD  297

Query  426  PTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW  485
            P  + L+ E+   + +    V        L E       R     A  N   G       
Sbjct  298  PNVIKLRKEELTLNNIRQYYV--------LCEN------RKGKYQALCNIYGGIT-----  338

Query  486  SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL  545
                                + QAIIFC+T+ +   L    +Q G       HQ S   L
Sbjct  339  --------------------IGQAIIFCQTRRNAKWLTVEMMQDG-------HQVSL--L  369

Query  546  HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP------DEKQNY  599
             G+    +R   ++RF+ G  + LI T+V ARGID+  V  V+N  LP       + + Y
Sbjct  370  SGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVNQSEEPDYETY  429

Query  600  VHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLL  659
            +HRIGR GR  + GLA +++  +K                                + LL
Sbjct  430  LHRIGRTGRFGKKGLAFNMIEVDK--------------------------------LPLL  457

Query  660  SEIEEHLNCTISQVEPD  676
             +I++H N  I Q++P+
Sbjct  458  MKIQDHFNSNIKQLDPE  474


>sp|Q6H874|RH47A_ORYSJ DEAD-box ATP-dependent RNA helicase 47A 
OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0636300 PE=2 
SV=1
Length=573

 Score = 106 bits (264),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 153/346 (44%), Gaps = 38/346 (11%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +A+IV PSREL  Q +  +++     D  +L + L+ G   +R + ++ +N   IVVGTP
Sbjct  212  EAVIVAPSRELGMQIVREVEKILGPNDK-RLVQQLVGGANRSRQEEALKKNKPIIVVGTP  270

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR-------  400
            GR+ ++ + GKL+    RFLVLDE D LLS  Y + ++R+   + + +    R       
Sbjct  271  GRISEISAAGKLHTHSCRFLVLDEVDQLLSFNYREDMHRILEHVGRKSGTSSRDILGPLA  330

Query  401  ----LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLW  456
                 Q I+ SAT+  F V + +    H P  V  +    VP     V  PV  + D   
Sbjct  331  RRSERQTILVSATI-PFSVIRAARSWGHDPVLV--RAMSVVPLESITVPRPVLSQPDANS  387

Query  457  ERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTK  516
                 S  +     A D+  P                  Y   +  +HK+D  +  C   
Sbjct  388  NSPSNSVNQA----AVDSLPPSLE--------------HYYCTSKAQHKVD-TLRRCIHA  428

Query  517  IDCDNLEQYFIQQGGGPDK----KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICT  572
            ++   +  +        D     +        LHGD     R   L++FK G+ R L+  
Sbjct  429  LEAQTVIAFMNNTKPLKDVVFKLEARGMKATELHGDLGKLARSTVLKKFKDGEFRVLVTN  488

Query  573  DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            +++ARG+D+     VIN+ LP +  +Y HR GR GR  R G  +++
Sbjct  489  ELSARGLDVPECDLVINLDLPTDSTHYAHRAGRTGRLGRKGTVVTI  534


 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 37/59 (63%), Gaps = 0/59 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            +F E+G+ P +   + +     PT++Q+ +IP+I    D ++ + TGSGKT A+ +P++
Sbjct  132  SFEELGLPPLLIDRLNKEGLTAPTEVQSAAIPIISQKHDAVIQSYTGSGKTLAYLLPIL  190


>sp|A1CFV3|DBP5_ASPCL ATP-dependent RNA helicase dbp5 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp5 PE=3 SV=1
Length=487

 Score = 105 bits (262),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 113/437 (26%), Positives = 182/437 (42%), Gaps = 91/437 (21%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            KN +DLGL   I   +          ++   L    G      PPK+  V  S++  G  
Sbjct  77   KNFEDLGLDPRILKGLSAMNFRKPSKIQERALPLLLGN-----PPKN-LVGQSQSGTGKT  130

Query  267  VKSQHSGNAQV-TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
                 +  ++V   T+ +   P+ALI+ P+RELA Q +  +    +++D       LIIG
Sbjct  131  AAFVLNALSRVDLSTEQMQKTPQALILAPTRELARQIVGVVSVMGQFLDG------LIIG  184

Query  326  GVAARD---QLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYS  381
                 D   +   LE    I VGTPG + D++    +  ++++ LVLDEAD +L  QG  
Sbjct  185  TAVPADINNRPKRLE--CSIAVGTPGTVMDMIKRRIMVPNKLKVLVLDEADNMLDQQGLG  242

Query  382  DFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV  441
            D   R+   +P      + +QV++ SAT                            PD V
Sbjct  243  DQCIRVKALLP------RDIQVVLFSATF---------------------------PDHV  269

Query  442  HHVVVPVNPKTDRLW---ERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAV  498
            H       P  + L    E L    I+   +   D             +  K L   Y +
Sbjct  270  HAYAAKFAPNANELTLQHEELTVEGIKQLYLDCSDE-----------EDKYKTLVQLYGL  318

Query  499  RAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNL  558
              +       +IIF +T+     +E+  + +G          +   L G     +R + +
Sbjct  319  LTVGS-----SIIFVQTRTSASEIEKRMVAEG---------HTVASLTGGIDVTKRDEII  364

Query  559  ERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD-----------EKQNYVHRIGRVG  607
            ++F+ G+ + LI T+V ARGID+  V  VIN  +P+           + Q Y+HRIGR G
Sbjct  365  DKFRSGEAKVLITTNVLARGIDVSTVSMVINYDIPELHRPGVPERQADFQTYLHRIGRTG  424

Query  608  RAERMGLAISLVATEKE  624
            R  R+G++IS V+  +E
Sbjct  425  RFGRVGVSISFVSNREE  441


 Score = 40.8 bits (94),  Expect = 0.041, Method: Compositional matrix adjust.
 Identities = 18/57 (32%), Positives = 37/57 (65%), Gaps = 2/57 (4%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            F ++G+ P I + +  M++  P+ IQ  ++PL+LG    +++  +++G+GKT AF +
Sbjct  79   FEDLGLDPRILKGLSAMNFRKPSKIQERALPLLLGNPPKNLVGQSQSGTGKTAAFVL  135


>sp|Q5ZHZ0|DX39B_CHICK Spliceosome RNA helicase DDX39B OS=Gallus 
gallus OX=9031 GN=DDX39B PE=2 SV=1
Length=428

 Score = 104 bits (260),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 152/342 (44%), Gaps = 67/342 (20%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGTP  347
             L++  +RELA Q     ++F KY+  P ++  +  GG+A +    VL+ N   IVVGTP
Sbjct  116  VLVMCHTRELAFQISKEYERFSKYM--PSVKVAVFFGGLAVKKDEEVLKKNCPHIVVGTP  173

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+  L     LNL  ++  +LDE D +L Q     + R   +I ++T   K  QV++ S
Sbjct  174  GRILALARNKSLNLKHIKHFILDECDKMLEQLD---MRRDVQEIFRMTPHEK--QVMMFS  228

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-----HVVVPVNPKTDRLWERLGKS  462
            ATL S +++ +  K M  P  + +  E  +  T+H     +V +  N K  +L++ L   
Sbjct  229  ATL-SKEIRPVCRKFMQDPMEIFVDDETKL--TLHGLQQYYVKLKDNEKNRKLFDLL---  282

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
                 DV                                   + +Q +IF ++   C  L
Sbjct  283  -----DVL----------------------------------EFNQVVIFVKSVQRCIAL  303

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
             Q  ++Q          F  + +H      ER    ++FK    R L+ T++  RG+DI 
Sbjct  304  AQLLVEQN---------FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIE  354

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
             V    N  +P++   Y+HR+ R GR    GLAI+ V+ E +
Sbjct  355  RVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEND  396


 Score = 43.5 bits (101),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 20/61 (33%), Positives = 36/61 (59%), Gaps = 0/61 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F +  + PE+ +A+ +  +  P+++Q E IP  + G DVL  A++G GKT  F +  +
Sbjct  45   SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL  104

Query  62   Q  62
            Q
Sbjct  105  Q  105


>sp|A2QWW0|MAK5_ASPNC ATP-dependent RNA helicase mak5 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=mak5 PE=3 SV=1
Length=766

 Score = 106 bits (265),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 97/360 (27%), Positives = 157/360 (44%), Gaps = 47/360 (13%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
             AP ALI+ P+RELA Q   +I +   +      R  L+ GG++ + Q  VL  G DIV+
Sbjct  273  TAPIALIMSPTRELAHQLAKHIGELALHAPGSNARIALLTGGLSVQKQQRVL-AGADIVI  331

Query  345  GTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG---  398
            GTPGR+ +++S+G+     +S+++FLV+DEAD LLS+G+      +   + +V       
Sbjct  332  GTPGRVWEVLSSGQGLIRKMSEIKFLVIDEADRLLSEGHFKEAEEILGALDRVEEGNFGG  391

Query  399  ------------KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVV  446
                           Q +V SAT H    + L +K+     W    G D         ++
Sbjct  392  EESEDEEKEDARSERQTLVFSATFH----RDLQQKLAGKARWT---GGD---------IM  435

Query  447  PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM  506
                  + L ++L     +   +     ++      E   E   + K  Y    +  +  
Sbjct  436  SNKESMEYLLQKLKFREEKPKFIDVNPVSQMAEGLKEGIVECGAMEKDLYLYTLLLYNPK  495

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK---K  563
             + ++F  +      L Q  +Q  G P         + LH       R +++ERF     
Sbjct  496  HRTLVFTNSISAVRRLTQ-LLQNLGLP--------ALALHSSMAQKARLRSVERFSSPTS  546

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
                 L+ TDVAARG+DI G+ +VI+   P     YVHR GR  RA   G ++ + A E+
Sbjct  547  DPSSILVATDVAARGLDIKGIDFVIHYHAPRAADTYVHRSGRTARAGASGKSVIICAPEE  606


 Score = 58.2 bits (139),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 32/77 (42%), Positives = 48/77 (62%), Gaps = 2/77 (3%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            +A+  +G+ PEI  ++ +M +  PT +Q   IP IL G DV+  A TGSGKT AF IP++
Sbjct  192  SAWESLGLSPEILTSLSKMKFTTPTLVQKSCIPQILDGHDVIGKASTGSGKTLAFGIPIL  251

Query  62   QIVYETLKDQQEGKKGK  78
            +   E  K +Q+ + GK
Sbjct  252  EHYLE--KRRQDLRAGK  266


>sp|Q4PEX7|DBP8_USTMA ATP-dependent RNA helicase DBP8 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP8 PE=3 SV=2
Length=531

 Score = 105 bits (262),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 108/398 (27%), Positives = 178/398 (45%), Gaps = 76/398 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPK--LRELLIIGGVAARDQLSVLEN-GVDIVVG  345
            A+++ P+REL  Q     +QF    +  +  LR  L++GG+    Q S L N    ++V 
Sbjct  109  AVVLTPTRELGVQLH---EQFVAVGEGARMGLRCALVLGGMDMMKQASELANLRPHVIVA  165

Query  346  TPGRLDDLVSTG---KLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            TPGRL D + +G   +  L + +FLVLDEAD LL+  +   +  +++ +P      K LQ
Sbjct  166  TPGRLVDHLRSGGGEEWGLRRCKFLVLDEADRLLTDTFKPELEYLYSVLP----SAKTLQ  221

Query  403  VIVCSATLHSFDVKKLSEKIMHF-----------PTWVDLKGEDSVPDTV----------  441
             ++ +ATL        +E+++ F           P    ++ +   P+T+          
Sbjct  222  TLLFTATL--------TEQVVEFANAKRPEGKPAPMVCKIEMDTKTPETLEQRYVFVPSH  273

Query  442  ------HHVV--VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK  493
                  +H++   P+ P ++R+  +L   H + D    ++N R           +   L 
Sbjct  274  VREPYLYHILRHPPIKPSSERV-RKLNAKH-QADRERKEENQRKSGKRRRTHHASDSDLD  331

Query  494  GEYAVRAIKEHKMDQAIIF---CRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRK  550
             +          +   IIF   C+T      +    + + G P+        V LH   +
Sbjct  332  QDDDAALF----LPATIIFTARCKTAATLSGM----LAELGIPN--------VSLHSHLR  375

Query  551  PHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAE  610
              ER +NL+ F+   V  LI TDV +RG+DI  V  VIN  LP   Q+YVHR+GR  R  
Sbjct  376  QSERSENLQTFRAQRVPVLIATDVGSRGLDIPDVELVINWDLPSAWQDYVHRVGRTARNG  435

Query  611  RMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGG  648
            + G AIS + TE++    H    +     NT+L +  G
Sbjct  436  KRGFAISFI-TERDIDVIHSIEDK----INTKLTQLEG  468


 Score = 52.8 bits (125),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 41/59 (69%), Gaps = 0/59 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
           +FS +G+ P + +++  +   +PT IQ+ +IP +L G D++  A+TGSGKT  F++P++
Sbjct  39  SFSSIGISPMLIRSLASLQIKVPTPIQSLTIPSVLEGRDLVGGAQTGSGKTLCFALPIL  97


>sp|Q54VT4|DDX47_DICDI Probable ATP-dependent RNA helicase ddx47 
OS=Dictyostelium discoideum OX=44689 GN=ddx47 PE=3 SV=1
Length=546

 Score = 105 bits (263),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 140/343 (41%), Gaps = 67/343 (20%)

Query  283  LPNAPKALI---VEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
            L  AP+ L    + P+RELA Q  +   QF        ++  +++GG+ +  Q   L   
Sbjct  181  LLEAPQGLFCLALAPTRELAYQIAD---QFNAIGSTIGVKTCVLVGGIDSMSQSLALAKK  237

Query  340  VDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
              +VVG+PGR L  L  T   NL  +++ ++DEAD L S  + + +N +   IP      
Sbjct  238  PHVVVGSPGRVLHHLEHTKGFNLRSIKYFIMDEADRLFSADFEEEVNNILKVIP------  291

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV--HHVVVPVNPKTDRLW  456
            K     + SAT+ S  V KL    +  P  V +  +    DT+   ++ VP         
Sbjct  292  KERNTYLFSATMTS-KVAKLQRASLVNPVKVQVASKYQTVDTLLQQYLFVPFK-------  343

Query  457  ERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTK  516
                                                K  Y    + E   +  IIF  T 
Sbjct  344  -----------------------------------YKDCYLAYILNELAGNLTIIFTSTC  368

Query  517  IDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAA  576
                 +       G         F  + ++GD    +R  +L +FK+G    L+ TDVAA
Sbjct  369  ASSTKIAMMLRNLG---------FGAIPINGDMDQGKRLASLNKFKQGTKSILVATDVAA  419

Query  577  RGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            RG+DI  V  VIN  +P   + YVHR+GR  RA   G AI++V
Sbjct  420  RGLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGNSGRAITIV  462


 Score = 61.2 bits (147),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 30/63 (48%), Positives = 41/63 (65%), Gaps = 0/63 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F  +GV P+I  A  ++ +  P +IQ ESIP  L G D++  A+TGSGKT AF IPV+Q 
Sbjct  121  FESLGVHPQIIDACNKLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIPVLQK  180

Query  64   VYE  66
            + E
Sbjct  181  LLE  183


>sp|A5DDN0|SUB2_PICGU ATP-dependent RNA helicase SUB2 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=SUB2 PE=3 
SV=3
Length=432

 Score = 103 bits (258),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 95/355 (27%), Positives = 157/355 (44%), Gaps = 59/355 (17%)

Query  283  LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG---  339
            +P     L++  +RELA Q  N   +F KY+  P ++  +  GG+     +  L+N    
Sbjct  113  VPGEITTLVICHTRELAYQIRNEYARFSKYM--PDVKTEVFYGGIPIAKDIEKLKNKDTC  170

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
              IVV TPGRL  LV    + L+ V+  V+DE D +L    +  + R    I + T   K
Sbjct  171  PHIVVATPGRLHALVEEKAIRLNNVKSFVIDECDKVLE---AIDMRRDVQDIFRNTPHQK  227

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              QV++ SATL S +++ + +K M  P  +++  +D    T+H                L
Sbjct  228  --QVMMFSATL-SQEIRPVCKKFMQNP--LEIYVDDEAKLTLHG---------------L  267

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
             + +++ D+   K+  R  A+                    +   + +Q IIF ++    
Sbjct  268  QQYYLKLDE---KEKNRKLAD-------------------LLDSLEFNQVIIFVKSTSRA  305

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            + L +  +            F  + +H      ER    + FK+ + R  + TDV  RGI
Sbjct  306  NELNKLLV---------ASNFPSIAVHSAMPQEERIARYKSFKEFNKRICVSTDVFGRGI  356

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            DI  +   IN  LP+E   Y+HR+GR GR    GLAIS V +++++       SR
Sbjct  357  DIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLAISFVGSKEDEEVLEKIQSR  411


 Score = 39.7 bits (91),  Expect = 0.085, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 34/59 (58%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +  + PE+ +A+ +  +  P+++Q   IP  + G DVL  A++G GKT  F +  +Q
Sbjct  50   FRDFLLKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQ  108


>sp|Q4P7Z8|DBP5_USTMA ATP-dependent RNA helicase DBP5 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP5 PE=3 SV=1
Length=456

 Score = 104 bits (259),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 164/388 (42%), Gaps = 80/388 (21%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN-GVDIVVG  345
            P+A+ + PSRELA Q ++  +   K+ +        +   +   D++   E     +++G
Sbjct  135  PQAIALAPSRELARQIMDVARTMSKFTN--------VTTCLCLPDEVKRGEKITAQLIIG  186

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            TPG+  D++ +  ++ + ++  VLDEAD +L  Q   +   R+ N +P      K  Q++
Sbjct  187  TPGKTFDMIKSKGIDTAAIKVFVLDEADNMLDQQSLGEQSIRVKNTMP------KSCQLV  240

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL---WERLGK  461
            + SAT               FPT             V+   V + P  + +    E L  
Sbjct  241  LFSAT---------------FPT------------NVYDFAVRIAPGANEIRLKQEELSV  273

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
              I+   +  KD                   K E  V       + Q+IIFC  +   D 
Sbjct  274  EGIKQFYMDCKDEDH----------------KYEVLVELYNLLTIGQSIIFCAKRETADR  317

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            + Q   Q+G   D          LHG  +  +R + ++ F+ G  + LI T+V ARGIDI
Sbjct  318  IAQKMTQEGHKVD---------SLHGRLETADRDRTIDAFRDGKSKVLISTNVIARGIDI  368

Query  582  HGVPYVINVTLP------DEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS-SR  634
              V  VIN  +P       + + Y+HRIGR GR  R G++I+ V    ++ W ++    +
Sbjct  369  QQVTLVINYDMPLTQTGEADAETYLHRIGRTGRFGRKGVSINFV--HDQQSWSYMDQIEK  426

Query  635  GKGCYNTRLKEDGGCTIWYNEMQLLSEI  662
               C  TR+  +    + Y   + L +I
Sbjct  427  ALKCQITRVATNDLEEMEYTIKEALKQI  454


>sp|P0CQ96|SUB2_CRYNJ ATP-dependent RNA helicase SUB2 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=SUB2 PE=3 SV=1
Length=442

 Score = 103 bits (258),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 97/339 (29%), Positives = 154/339 (45%), Gaps = 59/339 (17%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV---AARDQLSVLENGVDIVVGT  346
            +I+  +RELA Q  N   +F K++ N  +R  +  GG    A ++ L+  E    IVVGT
Sbjct  131  IILCHTRELAYQIKNEFTRFSKFMTN--VRTGVFYGGTPISADQEILANKEKCPHIVVGT  188

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGR   LV   KLN S+V+  VLDE D +L Q     + R   +I + T   K  QV++ 
Sbjct  189  PGRTMALVRDKKLNASKVKHFVLDECDKMLEQLD---MRRDVQEIFRATPHHK--QVMMF  243

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SATL S D++   +K M  P  +++  +D    T+H +         + + +L +     
Sbjct  244  SATL-SKDIRATCKKFMQSP--LEIYVDDETKLTLHGL--------QQFYLKLEEREKNR  292

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                  DN                              + +Q  IF ++      L+   
Sbjct  293  KLNDLLDNL-----------------------------EFNQVCIFVKSVQRATQLDA-L  322

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
            +Q+   P         +C+H   +  ER    ++FK  + R L+ TD+  RGID+  V  
Sbjct  323  LQECNFPS--------ICIHSGLQQAERISRFQQFKAFEKRILVATDIFGRGIDVERVNV  374

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            VIN   P +  +Y+HR+GR GR    GLAIS V+++ ++
Sbjct  375  VINYDAPSDADSYLHRVGRAGRFGTKGLAISFVSSDADQ  413


 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 20/59 (34%), Positives = 36/59 (61%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +  + PE+ +A+ ++ +  P+++Q E IP  + G DVL  A++G GKT  F +  +Q
Sbjct  61   FRDFLLKPELLRAISDLGFEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQ  119


>sp|P0CQ97|SUB2_CRYNB ATP-dependent RNA helicase SUB2 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=SUB2 PE=3 SV=1
Length=442

 Score = 103 bits (258),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 97/339 (29%), Positives = 154/339 (45%), Gaps = 59/339 (17%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV---AARDQLSVLENGVDIVVGT  346
            +I+  +RELA Q  N   +F K++ N  +R  +  GG    A ++ L+  E    IVVGT
Sbjct  131  IILCHTRELAYQIKNEFTRFSKFMTN--VRTGVFYGGTPISADQEILANKEKCPHIVVGT  188

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGR   LV   KLN S+V+  VLDE D +L Q     + R   +I + T   K  QV++ 
Sbjct  189  PGRTMALVRDKKLNASKVKHFVLDECDKMLEQLD---MRRDVQEIFRATPHHK--QVMMF  243

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SATL S D++   +K M  P  +++  +D    T+H +         + + +L +     
Sbjct  244  SATL-SKDIRATCKKFMQSP--LEIYVDDETKLTLHGL--------QQFYLKLEEREKNR  292

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                  DN                              + +Q  IF ++      L+   
Sbjct  293  KLNDLLDNL-----------------------------EFNQVCIFVKSVQRATQLDA-L  322

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
            +Q+   P         +C+H   +  ER    ++FK  + R L+ TD+  RGID+  V  
Sbjct  323  LQECNFPS--------ICIHSGLQQAERISRFQQFKAFEKRILVATDIFGRGIDVERVNV  374

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            VIN   P +  +Y+HR+GR GR    GLAIS V+++ ++
Sbjct  375  VINYDAPSDADSYLHRVGRAGRFGTKGLAISFVSSDADQ  413


 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 20/59 (34%), Positives = 36/59 (61%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +  + PE+ +A+ ++ +  P+++Q E IP  + G DVL  A++G GKT  F +  +Q
Sbjct  61   FRDFLLKPELLRAISDLGFEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQ  119


>sp|Q754U8|PRP5_EREGS Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 
109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=PRP5 PE=3 SV=2
Length=855

 Score = 106 bits (264),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 93/350 (27%), Positives = 151/350 (43%), Gaps = 56/350 (16%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P  LI+ P+RELA Q    + +F     +P +R L   GG   + Q++ ++ GV+IV+ T
Sbjct  351  PLGLILSPTRELALQIHEEVTKFTS--GDPSIRSLCCTGGSELKRQINDIKRGVEIVIAT  408

Query  347  PGRLDDLVSTGKLNL---SQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            PGR  DL+S    NL    ++ F+V+DEAD L   G+   +    NQI +     K  Q 
Sbjct  409  PGRFIDLLSLNSGNLINPKRIVFVVMDEADRLFDLGFEPQV----NQIMKCIRPDK--QC  462

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            ++ SAT  +  +K  + KI+H P ++ +  +  + + +   V   + + D+      KS 
Sbjct  463  VLFSATFPN-KLKSFASKILHDPVYITVNSKSLINENIEQKVEIFSNEEDKF-----KSL  516

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
            I     H    T+   N                          ++ I+F  ++  CD L 
Sbjct  517  I-----HWLALTQQNLND-------------------------EKTIVFVSSQQICDILY  546

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
                  G         F+   +H  +   ER  NL+ FK+     LICT+V +RG+++  
Sbjct  547  NRLEANG---------FTTFAIHAGKIYTERAWNLKCFKETANGILICTEVLSRGLNVPE  597

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
            V  VI          YVH  GR  R    G A++L+   +    Y +  S
Sbjct  598  VSLVIIYNAAKTFAQYVHTTGRTARGSNKGTALTLLMNTELAASYILMKS  647


 Score = 49.3 bits (116),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 44/62 (71%), Gaps = 1/62 (2%)

Query  4    FSEMGVMPEIAQAV-EEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +S++G+   I   +  E+++ +PT IQA++IP I+ G DV+  ++TGSGKT +F +P+++
Sbjct  277  WSQLGLNSGIMNLLTRELEFTVPTPIQAQAIPAIMSGRDVIGISKTGSGKTVSFILPLLR  336

Query  63   IV  64
             +
Sbjct  337  QI  338


>sp|Q9FZ92|RH44_ARATH Putative DEAD-box ATP-dependent RNA helicase 
44 OS=Arabidopsis thaliana OX=3702 GN=RH44 PE=5 SV=2
Length=622

 Score = 105 bits (262),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 95/343 (28%), Positives = 156/343 (45%), Gaps = 45/343 (13%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P AL++ P+RELA Q      +F +Y+     + + I G  +   Q   L  G +IV+ T
Sbjct  287  PYALVMVPTRELAHQIEEETVKFSRYLG---FKAVSITGWESIEKQALKLSQGCEIVIAT  343

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL D +    + L+Q  +LVLDEAD ++   +           PQV+   + L V+ C
Sbjct  344  PGRLLDCLERRYVVLNQCNYLVLDEADRMIDMDFE----------PQVS---EVLDVMPC  390

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            S      + ++L EK ++  T++              +++ V        ERL +  +R 
Sbjct  391  SNLKPEKEDEELEEKKIYRTTYM----------FSATMLLSV--------ERLARKFLRN  432

Query  467  DDV-HAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
              V    + T+       M  E+ K  + +  +  + + K   AI+F  T+   D + + 
Sbjct  433  PVVVTIGETTKFITQQVIMTKESDKFSRLKKLIDDLGDDKT--AIVFVNTRNKVDYIVKN  490

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
              + G        +     LH  +   +R  +LE FKK     L+ TDV  RG+DI  + 
Sbjct  491  LEKVG--------RCRVTTLHAGKSQEQRDYSLEEFKKKRFNVLVTTDVLGRGLDILDLA  542

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
             VIN  +P+    Y HRIGR GRA + G+A + +  E + V+Y
Sbjct  543  QVINYDMPNTMDLYTHRIGRTGRAGKTGVATTFLTLEDKDVFY  585


 Score = 35.8 bits (81),  Expect = 1.6, Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (68%), Gaps = 0/34 (0%)

Query  31   ESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIV  64
            E+IPL L   DV+  + TGSGKT AF +P++  +
Sbjct  239  ETIPLGLEQRDVIGISATGSGKTAAFVLPMLAYI  272


>sp|Q5B5E7|RRP3_EMENI ATP-dependent rRNA helicase rrp3 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / 
NRRL 194 / M139) OX=227321 GN=rrp3 PE=3 SV=1
Length=465

 Score = 104 bits (259),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 141/348 (41%), Gaps = 60/348 (17%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P     L++ P+RELA Q     +     I    +R  +I+GG+    Q   L     I+
Sbjct  112  PQTLFGLVLAPTRELAYQISQAFETLGSTIG---VRCAVIVGGMDMVAQSIALGKKPHII  168

Query  344  VGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            V TPGRL D L +T   +L  +++L +DEAD LL   + + ++++   +P+         
Sbjct  169  VATPGRLLDHLENTKGFSLRNLKYLAIDEADRLLDMDFGESLDKIIRILPRTR------H  222

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
              + SAT+ S  V+ L    +  P  V +  +     T+    + +  K   L       
Sbjct  223  TYLFSATM-STKVESLQRASLSNPVRVSVSSKYQTVSTLQSSYICIPHKHKNL-------  274

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
                                             Y V  + E     AIIF  T  +   +
Sbjct  275  ---------------------------------YLVYLLNEFAGQSAIIFTTTVHETQRV  301

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
               F+ +  G       F  + LHG      R   L +F+      L+ TDVAARG+DI 
Sbjct  302  A--FMLRALG-------FGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIP  352

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
             V  V N  LP + + Y+HR+GR  RA + G+AIS V     +VW  +
Sbjct  353  SVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVTQYDVEVWLRI  400


 Score = 68.2 bits (165),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 30/64 (47%), Positives = 47/64 (73%), Gaps = 0/64 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F E+G++ ++ +A E M +  PT IQ+++IPL L G DV+  AETGSGKT AF++P++Q
Sbjct  47   SFKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPMLQ  106

Query  63   IVYE  66
             + E
Sbjct  107  ALME  110


>sp|Q6FML5|PRP5_CANGA Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 
/ JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=PRP5 
PE=3 SV=1
Length=816

 Score = 105 bits (263),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 147/340 (43%), Gaps = 65/340 (19%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P A+I  P+RELA Q +N  ++ +K I +  +  +   GG   + Q+  L+ GV+I + T
Sbjct  327  PIAVIFAPTRELAVQ-IN--EEVQKLISDLDISSICCTGGSDLKKQIDKLKTGVEIAIAT  383

Query  347  PGRLDDLVSTGKLNLS---QVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL--  401
            PGR  DL+S    NL    ++ F+V+DEAD L   G+           PQ+ S  + +  
Sbjct  384  PGRFIDLLSLNGGNLVSTLRISFVVMDEADRLFDFGFE----------PQIASVLRTVRP  433

Query  402  --QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              Q ++ SAT  S  V   + + +  P  + +  E  V + ++      + ++D+  E L
Sbjct  434  DRQCVLFSATFPS-KVSNFASRFLDSPLQITVNAEGMVNERINQKFTICSDESDKFKELL  492

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
                                         +K+   E           ++ IIF  ++  C
Sbjct  493  S---------------------------LLKVFNSETV--------DEKTIIFVSSQQIC  517

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            D +E+             +      +H  R  +ER+QNLE FKK     L+CT+V +RG+
Sbjct  518  DIIEKRLT---------DYSEKLYSIHAGRPYNERRQNLELFKKTSNSILLCTEVMSRGL  568

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            ++  V  VI          YVH  GR  R  R G +ISL+
Sbjct  569  NVPEVSRVILYNSAKTFAQYVHSTGRTARGTREGTSISLL  608


 Score = 43.5 bits (101),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 52/80 (65%), Gaps = 5/80 (6%)

Query  1    MAAFSEMGVMPEIAQAVEEM-DWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
            +  +S++G+  +I + ++++  +   T IQ ++IP I+ G DV+  ++TGSGKT ++ +P
Sbjct  250  VTKWSQLGIPYDIIRFIKDVFSYKSLTPIQTQTIPAIMSGRDVIGISKTGSGKTISYLLP  309

Query  60   VIQIVYETLKDQQEGKKGKT  79
            +I+ V    K Q++ + G+T
Sbjct  310  MIRHV----KAQKKLRNGET  325


>sp|A5DKW3|DRS1_PICGU ATP-dependent RNA helicase DRS1 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DRS1 PE=3 
SV=2
Length=705

 Score = 105 bits (263),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 89/344 (26%), Positives = 155/344 (45%), Gaps = 69/344 (20%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            +A + +++ P+RELA Q  +  K+  +++ N  L   L +GG+  R Q   L++  DIVV
Sbjct  268  SATRVIVLTPTRELAIQVCDVGKKLGQFVAN--LNFGLAVGGLNLRQQEQQLKSRPDIVV  325

Query  345  GTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
             TPGRL D + ++   ++  +  LV+DEAD +L +G+   +  +   IP+      + Q 
Sbjct  326  ATPGRLIDHIRNSPSFSIENLEVLVMDEADRMLEEGFQVELTEILELIPK-----HKRQT  380

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            ++ SAT+++  ++ L +  +  P                 V + VNP             
Sbjct  381  MLFSATMNT-KIQDLIQLSLDKP-----------------VRIMVNP-------------  409

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYA--------VRAIKEHKMDQAIIFCRT  515
                         P   + ++  E ++I K E+         +R +   + ++ ++F   
Sbjct  410  -------------PKQAASKLVQEFVRIRKREHLKPALLYHLLRLVDPQQQNRIVVFVSR  456

Query  516  KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA  575
            K     L       G              LHG     +R Q+++ F+   V  LICTD+A
Sbjct  457  KEMAHRLRIVLGLLG---------MKVSELHGSLTQEQRLQSVKDFRSLAVPVLICTDLA  507

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            ARG+DI  +  VIN  +P   + Y+HR+GR  RA R G +I+ V
Sbjct  508  ARGLDIPKIEIVINFDMPKTHEIYLHRVGRTARAGREGRSITFV  551


 Score = 50.4 bits (119),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 43/67 (64%), Gaps = 1/67 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F  + +   + + V  + + +P+ IQA SIP+ + G D++  A TGSGKT A+ IP+
Sbjct  197  ITSFQALQLSRPLLKGVGNLGYTVPSAIQAASIPIAMMGKDIVAGAVTGSGKTAAYLIPI  256

Query  61   IQ-IVYE  66
            I+ ++Y+
Sbjct  257  IERLIYK  263


>sp|O60173|DBP7_SCHPO ATP-dependent RNA helicase dbp7 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp7 
PE=3 SV=1
Length=709

 Score = 105 bits (262),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 101/363 (28%), Positives = 162/363 (45%), Gaps = 69/363 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL---IIGGVAARDQLSVLENGVDIVVG  345
            A+I+ P+REL +Q  N   +     +NP    ++   +IGG   + + + +  GV+I++G
Sbjct  219  AVIMAPTRELCQQIYNVANKLN---NNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIG  275

Query  346  TPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK-----  399
            TPGRL D L +T  L++SQVR++VLDE D L+  G+ + + ++ + +   +S  K     
Sbjct  276  TPGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSI  335

Query  400  --RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK-------GEDSVPDTV--HHVVVPV  448
              R   ++CSAT+    VK+LS+  +    ++          G    P+ +   +VVVP 
Sbjct  336  PSRKVTMLCSATMKD-TVKRLSDSALKDALYLKSSIVEETNDGYSQAPEQLLQRYVVVPP  394

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
              +   L   L +SH+R+                  + + I  L    +V        D 
Sbjct  395  KLRLVSLVALL-RSHVRS------------------YKKIIIFLSCSDSV--------DF  427

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFS------------CVCLHGDRKPHERKQ  556
                 R  I+ D +E+   ++   PD +G   S               LHG      R  
Sbjct  428  HFEAFRCAINADEMEEAVKEK---PDSEGDIISNAPALRIDGKSNVYRLHGSLSQQIRTS  484

Query  557  NLERFKKGD---VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
             L  F   +      L+CTDVAARG+D+  V  V+    P    +Y+HRIGR  RA   G
Sbjct  485  TLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLHRIGRTARAGHNG  544

Query  614  LAI  616
             AI
Sbjct  545  AAI  547


 Score = 37.0 bits (84),  Expect = 0.67, Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query  19   EMDWLLPTDIQAESIPLILGGGD--VLMAAETGSGKTGAFSIPVIQ  62
            +M+   PT IQ+  +P +L   D    + A+TGSGKT A+ +P++Q
Sbjct  156  KMNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQ  201


>sp|Q8VDW0|DX39A_MOUSE ATP-dependent RNA helicase DDX39A OS=Mus 
musculus OX=10090 GN=Ddx39a PE=1 SV=1
Length=427

 Score = 103 bits (256),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 156/337 (46%), Gaps = 57/337 (17%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGTP  347
             L++  +RELA Q     ++F KY+  P ++  +  GG++ +    VL+ N   +VVGTP
Sbjct  115  VLVMCHTRELAFQISKEYERFSKYM--PSVKVSVFFGGLSIKKDEDVLKKNCPHVVVGTP  172

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+  LV +  LNL  V+  VLDE D +L Q     + R   +I ++T   K  Q ++ S
Sbjct  173  GRILALVRSRSLNLRNVKHFVLDECDKMLEQLD---MRRDVQEIFRLTPHEK--QCMMFS  227

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL S +++ +  K M  P  V +  E  +  T+H                L + +++  
Sbjct  228  ATL-SKEIRPVCRKFMQDPMEVFVDDETKL--TLHG---------------LQQYYVKLK  269

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
            D  ++ N +          + + +L+             +Q +IF ++   C  L Q  +
Sbjct  270  D--SEKNRK--------LFDLLDVLE------------FNQVVIFVKSVQRCMALAQLLV  307

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
            +Q          F  + +H      ER    ++FK    R L+ T++  RG+DI  V  V
Sbjct  308  EQN---------FPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIV  358

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
             N  +P++   Y+HR+ R GR    GLA++ V+ E +
Sbjct  359  FNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDEND  395


 Score = 43.9 bits (102),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 20/61 (33%), Positives = 36/61 (59%), Gaps = 0/61 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F +  + PE+ +A+ +  +  P+++Q E IP  + G DVL  A++G GKT  F +  +
Sbjct  44   SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL  103

Query  62   Q  62
            Q
Sbjct  104  Q  104


>sp|A7TK63|DBP8_VANPO ATP-dependent RNA helicase DBP8 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=DBP8 PE=3 SV=1
Length=431

 Score = 103 bits (256),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 152/347 (44%), Gaps = 67/347 (19%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P+    +++ P+RELA Q     +QF     +  +R  L++GG +   Q   L+     +
Sbjct  68   PSGMFGVVLTPTRELAIQI---AEQFTALGSSMNIRVCLVVGGESIVKQALELQKKPHFI  124

Query  344  VGTPGRL-DDLVSTGKL---NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
            + TPGRL   ++S+G+     LS+V++LVLDEAD +L+Q ++  ++    ++P      +
Sbjct  125  IATPGRLAHHILSSGEEVVGGLSRVKYLVLDEADLILTQTFAADLSTCIAKLP----PKQ  180

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVP-------DTVHHVVVPVNPKT  452
            + Q ++ +AT+    V+ L           +   +DS P       + V +V VP   K 
Sbjct  181  KRQTLLFTATITD-QVRALQ----------NAPAQDSKPPLFAYEVENVDNVAVPSTLKL  229

Query  453  DRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF  512
            + L                          PE   EA       Y +   +++K    I+F
Sbjct  230  EYLL------------------------VPEHVKEAYL-----YQLLTCEDYKDSSVIVF  260

Query  513  CRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICT  572
                   + L +           +  +     LH      ER  +L+RF+    R LI T
Sbjct  261  VNRTTAAEVLRRTL---------RSLEVRVASLHSQMPQSERINSLQRFRANAARVLIAT  311

Query  573  DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            DVAARG+DI  V  VIN  +P +   ++HR GR  RA R G AIS V
Sbjct  312  DVAARGLDIPTVELVINYDIPQDPDTFIHRSGRTARAGRSGDAISFV  358


 Score = 43.9 bits (102),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 0/61 (0%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           M  F  +G+   + +++  M    PT IQ   IP IL G D +  A+TGSGKT AF+ P+
Sbjct  1   MQDFKSLGLSRWLVESLNAMRITHPTAIQKHCIPEILKGRDCIGGAKTGSGKTIAFAGPM  60

Query  61  I  61
           +
Sbjct  61  L  61


>sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 OS=Caenorhabditis 
elegans OX=6239 GN=glh-4 PE=1 SV=2
Length=1156

 Score = 105 bits (263),  Expect = 5e-22, Method: Compositional matrix adjust.
 Identities = 87/350 (25%), Positives = 164/350 (47%), Gaps = 61/350 (17%)

Query  286   APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN--GVDIV  343
             +P+ LIV P+REL  QT    +Q         L+  L  GG +    +  L +   ++I+
Sbjct  814   SPRLLIVAPTRELVNQTFTTARQLTYET---GLKCGLAFGGYSRNANVQHLRSFSQLNIL  870

Query  344   VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQ  402
             V T GRL D V+ G+++LS+++++VLDEAD ++ S  + + ++++      + S G+R Q
Sbjct  871   VATMGRLQDFVNAGEVSLSKMKYIVLDEADRMVDSNDFGEEVSKI------IGSPGERTQ  924

Query  403   VIVCSATLHSFDVKK--LSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLG  460
               V  +   S D++   L + +    T + +    +  + +   ++PV P+T++      
Sbjct  925   QTVLFSASFSEDLQSDDLPKFVKEGYTMLQVDKFGTANEKIDQKILPV-PRTEKR-----  978

Query  461   KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG--EYAVRAIKEHKMDQ--AIIFCRTK  516
                                       +AI  L G  E  V  + +  +++   +IF  + 
Sbjct  979   --------------------------DAIYKLLGIDENTVTLLPDAPIEKQKTLIFVNSV  1012

Query  517   IDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAA  576
               CD L       G          S + +H  +   +R + L+ F++G  + ++ ++V A
Sbjct  1013  KFCDTLAALISSAG---------VSTISMHSYQNQEQRDRTLDDFRRGKYQCMVASNVCA  1063

Query  577   RGIDIHGVPYVINVTLPDEK--QNYVHRIGRVGRAERMGLAISLVATEKE  624
             RG++I G+ +V+N  +PD+     YV+RIGR GRA   G + + V  E +
Sbjct  1064  RGLNIAGLDHVVNYDMPDKNGFDEYVNRIGRTGRAGFTGTSTAFVDVEND  1113


 Score = 45.8 bits (107),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 43/73 (59%), Gaps = 2/73 (3%)

Query  1    MAAFSEMGVMPE-IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
            MA+F    ++P+ +   ++ M    PT IQ  S   I+ G DV+  A TGSGKT AF IP
Sbjct  734  MASFDGFKILPQDLHDNLKRMKMNRPTPIQRASFFPIMHGNDVVACAHTGSGKTLAFLIP  793

Query  60   -VIQIVYETLKDQ  71
             VI+++ E  KD+
Sbjct  794  FVIKLMEEFEKDR  806


>sp|Q3T147|DX39B_BOVIN Spliceosome RNA helicase DDX39B OS=Bos 
taurus OX=9913 GN=DDX39B PE=2 SV=1
Length=428

 Score = 103 bits (256),  Expect = 5e-22, Method: Compositional matrix adjust.
 Identities = 92/342 (27%), Positives = 152/342 (44%), Gaps = 67/342 (20%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGTP  347
             L++  +RELA Q     ++F KY+  P ++  +  GG++ +    VL+ N   IVVGTP
Sbjct  116  VLVMCHTRELAFQISKEYERFSKYM--PSVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTP  173

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+  L     LNL  ++  +LDE D +L Q     + R   +I ++T   K  QV++ S
Sbjct  174  GRILALARNKSLNLKHIKHFILDECDKMLEQLD---MRRDVQEIFRMTPHEK--QVMMFS  228

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-----HVVVPVNPKTDRLWERLGKS  462
            ATL S +++ +  K M  P  + +  E  +  T+H     +V +  N K  +L++ L   
Sbjct  229  ATL-SKEIRPVCRKFMQDPMEIFVDDETKL--TLHGLQQYYVKLKDNEKNRKLFDLL---  282

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
                 DV                                   + +Q +IF ++   C  L
Sbjct  283  -----DVL----------------------------------EFNQVVIFVKSVQRCIAL  303

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
             Q  ++Q          F  + +H      ER    ++FK    R L+ T++  RG+DI 
Sbjct  304  AQLLVEQN---------FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIE  354

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
             V    N  +P++   Y+HR+ R GR    GLAI+ V+ E +
Sbjct  355  RVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEND  396


 Score = 43.5 bits (101),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 20/61 (33%), Positives = 36/61 (59%), Gaps = 0/61 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F +  + PE+ +A+ +  +  P+++Q E IP  + G DVL  A++G GKT  F +  +
Sbjct  45   SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL  104

Query  62   Q  62
            Q
Sbjct  105  Q  105


>sp|Q0J7Y8|RH45_ORYSJ DEAD-box ATP-dependent RNA helicase 45 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os08g0154200 PE=3 
SV=2
Length=947

 Score = 105 bits (262),  Expect = 5e-22, Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 151/345 (44%), Gaps = 82/345 (24%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  LI+ P+REL  Q  ++IK+F K +    +  + I GG     Q+S L+ G +IVV
Sbjct  357  DGPIGLIMAPTRELVVQIHSDIKKFAKSLG---INCVAIYGGSGVAQQISELKRGAEIVV  413

Query  345  GTPGRLDDLV--STGKL-NLSQVRFLVLDEADGLLSQGYSDFINRM-HNQIPQVTSDGKR  400
             TPGR+ D++  S+GK+ NL +V FLV+DEAD +   G+   I R+  N  P        
Sbjct  414  CTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIVQNTRPD-------  466

Query  401  LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLG  460
             Q ++ SA +    V+ L+ K++  P  + + G   V   +  +V               
Sbjct  467  RQTVLFSA-IFPRQVEILARKVLTKPVEIQVGGRSVVNKDITQLV---------------  510

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
               +R ++                W +  KIL                  +F  ++  CD
Sbjct  511  --EVRPENERFLRLLELLGE----WFDRGKIL------------------VFVHSQDKCD  546

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
            +L +   Q+G         + C+ LHG +   +R+  L  FK                  
Sbjct  547  SLLKDLFQRG---------YPCLSLHGGKDQTDRESTLADFK------------------  579

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
               +  V+N  +P+  ++YVHR+GR G A R G A++ ++ E+E+
Sbjct  580  -SNLELVVNYDVPNHYEDYVHRVGRTGHAGRKGFAVTFISDEEER  623


 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 23/64 (36%), Positives = 42/64 (66%), Gaps = 4/64 (6%)

Query  8    GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYET  67
            G+  ++   ++++ +  P  IQA+++P+I+ G D +  A+TGSGKT AF +P+++ V   
Sbjct  291  GLTSKLLDTIKKLGFEKPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHV---  347

Query  68   LKDQ  71
             KDQ
Sbjct  348  -KDQ  350


>sp|A5E3W5|SUB2_LODEL ATP-dependent RNA helicase SUB2 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=SUB2 PE=3 SV=1
Length=433

 Score = 103 bits (256),  Expect = 5e-22, Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 155/349 (44%), Gaps = 59/349 (17%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG---VDIVVG  345
             L++  +RELA Q  N   +F KY+  P ++  +  GG   +  +  L+N      IVV 
Sbjct  120  TLVICHTRELAYQIRNEYARFSKYM--PDVKTEVFYGGTPVKRDIEKLKNKDTCPHIVVA  177

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGRL  LV    + L+ V+  V+DE D +L    S  + R    I + T   K  QV++
Sbjct  178  TPGRLHALVQEKAIRLNNVKSFVIDECDKVLE---SLDMRRDVQDIFRATPHQK--QVMM  232

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SATL S D++ + +K M  P  +++  +D    T+H                L + +I+
Sbjct  233  FSATL-SQDIRPVCKKFMQNP--LEIYVDDEAKLTLHG---------------LQQYYIK  274

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
             ++   K+  R  ++                    +   + +Q IIF ++    + L + 
Sbjct  275  LEE---KEKNRKLSD-------------------LLDSLEFNQVIIFVKSTQRANELNKL  312

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
                          F  + +H      ER +  + FK+ + R  + TDV  RGIDI  + 
Sbjct  313  LC---------ACNFPSIAVHSGLPQEERIERYKSFKEFNKRICVSTDVFGRGIDIERIN  363

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
              IN  LP+E   Y+HR+GR GR    GL IS V+T++++       SR
Sbjct  364  LAINYDLPNEADQYLHRVGRAGRFGTKGLGISFVSTKEDEEVLEKIQSR  412


 Score = 40.4 bits (93),  Expect = 0.057, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 34/59 (58%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +  + PE+ +A+ +  +  P+++Q   IP  + G DVL  A++G GKT  F +  +Q
Sbjct  51   FRDFLLKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQ  109


>sp|Q63413|DX39B_RAT Spliceosome RNA helicase Ddx39b OS=Rattus 
norvegicus OX=10116 GN=Ddx39b PE=2 SV=3
Length=428

 Score = 103 bits (256),  Expect = 5e-22, Method: Compositional matrix adjust.
 Identities = 92/342 (27%), Positives = 152/342 (44%), Gaps = 67/342 (20%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGTP  347
             L++  +RELA Q     ++F KY+  P ++  +  GG++ +    VL+ N   IVVGTP
Sbjct  116  VLVMCHTRELAFQISKEYERFSKYM--PNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTP  173

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+  L     LNL  ++  +LDE D +L Q     + R   +I ++T   K  QV++ S
Sbjct  174  GRILALARNKSLNLKHIKHFILDECDKMLEQLD---MRRDVQEIFRMTPHEK--QVMMFS  228

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-----HVVVPVNPKTDRLWERLGKS  462
            ATL S +++ +  K M  P  + +  E  +  T+H     +V +  N K  +L++ L   
Sbjct  229  ATL-SKEIRPVCRKFMQDPMEIFVDDETKL--TLHGLQQYYVKLKDNEKNRKLFDLL---  282

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
                 DV                                   + +Q +IF ++   C  L
Sbjct  283  -----DVL----------------------------------EFNQVVIFVKSVQRCIAL  303

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
             Q  ++Q          F  + +H      ER    ++FK    R L+ T++  RG+DI 
Sbjct  304  AQLLVEQN---------FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIE  354

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
             V    N  +P++   Y+HR+ R GR    GLAI+ V+ E +
Sbjct  355  RVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEND  396


 Score = 43.9 bits (102),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 20/61 (33%), Positives = 36/61 (59%), Gaps = 0/61 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F +  + PE+ +A+ +  +  P+++Q E IP  + G DVL  A++G GKT  F +  +
Sbjct  45   SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL  104

Query  62   Q  62
            Q
Sbjct  105  Q  105


>sp|Q9Z1N5|DX39B_MOUSE Spliceosome RNA helicase Ddx39b OS=Mus 
musculus OX=10090 GN=Ddx39b PE=1 SV=1
Length=428

 Score = 103 bits (256),  Expect = 5e-22, Method: Compositional matrix adjust.
 Identities = 92/342 (27%), Positives = 152/342 (44%), Gaps = 67/342 (20%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGTP  347
             L++  +RELA Q     ++F KY+  P ++  +  GG++ +    VL+ N   IVVGTP
Sbjct  116  VLVMCHTRELAFQISKEYERFSKYM--PNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTP  173

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+  L     LNL  ++  +LDE D +L Q     + R   +I ++T   K  QV++ S
Sbjct  174  GRILALARNKSLNLKHIKHFILDECDKMLEQLD---MRRDVQEIFRMTPHEK--QVMMFS  228

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-----HVVVPVNPKTDRLWERLGKS  462
            ATL S +++ +  K M  P  + +  E  +  T+H     +V +  N K  +L++ L   
Sbjct  229  ATL-SKEIRPVCRKFMQDPMEIFVDDETKL--TLHGLQQYYVKLKDNEKNRKLFDLL---  282

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
                 DV                                   + +Q +IF ++   C  L
Sbjct  283  -----DVL----------------------------------EFNQVVIFVKSVQRCIAL  303

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
             Q  ++Q          F  + +H      ER    ++FK    R L+ T++  RG+DI 
Sbjct  304  AQLLVEQN---------FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIE  354

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
             V    N  +P++   Y+HR+ R GR    GLAI+ V+ E +
Sbjct  355  RVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEND  396


 Score = 43.9 bits (102),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 20/61 (33%), Positives = 36/61 (59%), Gaps = 0/61 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F +  + PE+ +A+ +  +  P+++Q E IP  + G DVL  A++G GKT  F +  +
Sbjct  45   SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL  104

Query  62   Q  62
            Q
Sbjct  105  Q  105


>sp|A3LSN3|DRS1_PICST ATP-dependent RNA helicase DRS1 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DRS1 PE=3 SV=3
Length=741

 Score = 105 bits (261),  Expect = 5e-22, Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 159/335 (47%), Gaps = 53/335 (16%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            + + +++ P+RELA Q  +  K+  ++++N  L   L +GG+  R Q   L++  D+V+ 
Sbjct  293  STRVIVLTPTRELAIQVGDVGKKIGQFVNN--LNFGLAVGGLNLRQQEQQLKSRPDVVIA  350

Query  346  TPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            TPGRL D + ++   ++  +  LV+DEAD +L +G+   +  + + IP+     KR Q +
Sbjct  351  TPGRLIDHIRNSPSFSIDSLEVLVIDEADRMLDEGFQVELTEILSLIPK----NKR-QTL  405

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT+++  ++ L +  +  P              V  ++ P  PKT     +L +  +
Sbjct  406  LFSATMNT-KIQDLIQLSLQRP--------------VRIMIDP--PKT--AATKLTQEFV  446

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
            R   +  +D+ +P            ++LK       +   +  + ++F   K     L  
Sbjct  447  R---IRKRDHLKPAL--------LFQLLK------KLDPAQQSRIVVFVSRKESAHKLRI  489

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
                 G              LHG     +R  N+  FKK  V  LICTD+AARG+DI  +
Sbjct  490  VLGLLG---------MKVSELHGSLTQEQRLNNVNDFKKLIVPVLICTDLAARGLDIPKI  540

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
              VIN  +P   + Y+HR+GR  RA R G +IS V
Sbjct  541  EIVINYDMPKSHEVYLHRVGRTARAGRDGTSISFV  575


 Score = 48.1 bits (113),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 37/61 (61%), Gaps = 0/61 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F  + +   + + + ++ +  P+ IQ+ SIP+ L G D++  A TGSGKT A+ IP+I
Sbjct  222  TTFQTLQLSRPVLKGLSQLGYTKPSPIQSASIPIALLGRDIVAGAVTGSGKTAAYMIPII  281

Query  62   Q  62
            +
Sbjct  282  E  282


>sp|Q9GZR7|DDX24_HUMAN ATP-dependent RNA helicase DDX24 OS=Homo 
sapiens OX=9606 GN=DDX24 PE=1 SV=1
Length=859

 Score = 105 bits (262),  Expect = 5e-22, Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 156/351 (44%), Gaps = 65/351 (19%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR  349
            L++ P+RELA Q   +I    ++     ++  +++GG++ + Q  +L    +IVV TPGR
Sbjct  391  LVLTPTRELAVQVKQHIDAVARFTG---IKTAILVGGMSTQKQQRMLNRRPEIVVATPGR  447

Query  350  LDDLVSTGKL---NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            L +L+        NL Q+R LV+DEAD ++ +G+   ++++   +     + KR Q +V 
Sbjct  448  LWELIKEKHYHLRNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLNDSQYNPKR-QTLVF  506

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SATL    V +   +I+H                 H   +    K D L +++G      
Sbjct  507  SATLTL--VHQAPARILH---------------KKHTKKMDKTAKLDLLMQKIGM-----  544

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                     +P         + I + + E  V  + E K     I C T      L  + 
Sbjct  545  -------RGKP---------KVIDLTRNEATVETLTETK-----IHCETDEKDFYLYYFL  583

Query  527  IQQGGGPDKKGHQFSCV---------------CLHGDRKPHERKQNLERFKKGDVRFLIC  571
            +Q  G      +  SC+                LH      +R +NLE+F + +   L+ 
Sbjct  584  MQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLA  643

Query  572  TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            TDVAARG+DI  V +VI+  +P   + YVHR GR  RA   GL++ L+  E
Sbjct  644  TDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLIGPE  694


 Score = 46.6 bits (109),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 51/93 (55%), Gaps = 8/93 (9%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESI-PLILGGGDVLMAAETGSGKTGAFSIP  59
            ++A+ ++ V   + +A+  + +  PT IQA ++ P I    D+L AAETGSGKT AF+IP
Sbjct  191  VSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIP  250

Query  60   VIQIVYETLK-------DQQEGKKGKTTIKTGA  85
            +I  V +  K          E   G+T  + GA
Sbjct  251  MIHAVLQWQKRNAAPPPSNTEAPPGETRTEAGA  283


>sp|A2QUY7|DBP5_ASPNC ATP-dependent RNA helicase dbp5 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=dbp5 PE=3 SV=1
Length=482

 Score = 103 bits (257),  Expect = 6e-22, Method: Compositional matrix adjust.
 Identities = 91/355 (26%), Positives = 157/355 (44%), Gaps = 74/355 (21%)

Query  283  LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG-GVAARDQLSVLENGVD  341
            L   P+ALI+ P+RELA Q +  I+   +++D       L+IG  V A       +    
Sbjct  145  LQKTPQALILAPTRELARQIVGVIQVMGQFLDG------LVIGTAVPADTGARPAKMECS  198

Query  342  IVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVTSDGKR  400
            +VVGTPG + D++    +  +++R LVLDEAD +L  QG  D   R+   +P      + 
Sbjct  199  VVVGTPGTVMDMIKRRIMIANKLRVLVLDEADNMLDQQGLGDQCIRVKALLP------RD  252

Query  401  LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLG  460
            +QV++ SAT  +  V + + K       + L+ E+   + +  + +  +   D+      
Sbjct  253  IQVVLFSATFPAH-VHEYASKFAPQANEITLQHEELTVEGIKQLYLDCSNDEDKY-----  306

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
                                         + L   Y +  +       +IIF +T+    
Sbjct  307  -----------------------------QTLVNLYGLLTVGS-----SIIFVKTRASAQ  332

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             +E+  + +G          +   L G  +  +R   +++F+ G  + LI T+V ARGID
Sbjct  333  EIEKRMVAEG---------HTVASLTGGIEGSQRDAVIDQFRAGHAKVLITTNVLARGID  383

Query  581  IHGVPYVINVTLPD-----------EKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            +  V  VIN  +P+           + Q Y+HRIGR GR  R+G++IS V+  +E
Sbjct  384  VSTVSMVINYDIPEIHQPGARQRQADFQTYLHRIGRTGRFGRVGVSISFVSNREE  438


 Score = 43.9 bits (102),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 19/60 (32%), Positives = 39/60 (65%), Gaps = 2/60 (3%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILG--GGDVLMAAETGSGKTGAFSIPVI  61
            F ++G+ P I Q +  M++  P+ IQ  ++PL+LG    +++  +++G+GKT AF + ++
Sbjct  76   FEDLGLDPRILQGLSAMNFRKPSKIQERALPLLLGNPAKNLVGQSQSGTGKTAAFVLNIL  135


>sp|Q5U216|DX39A_RAT ATP-dependent RNA helicase DDX39A OS=Rattus 
norvegicus OX=10116 GN=Ddx39a PE=2 SV=1
Length=427

 Score = 102 bits (255),  Expect = 6e-22, Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 156/337 (46%), Gaps = 57/337 (17%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGTP  347
             L++  +RELA Q     ++F KY+  P ++  +  GG++ +    VL+ N   +VVGTP
Sbjct  115  VLVMCHTRELAFQISKEYERFSKYM--PSVKVSVFFGGLSIKKDEDVLKKNCPHVVVGTP  172

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+  LV +  LNL  V+  VLDE D +L Q     + R   +I ++T   K  Q ++ S
Sbjct  173  GRILALVRSRSLNLRNVKHFVLDECDKMLEQLD---MRRDVQEIFRLTPHEK--QCMMFS  227

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL S +++ +  K M  P  V +  E  +  T+H                L + +++  
Sbjct  228  ATL-SKEIRPVCRKFMQDPMEVFVDDETKL--TLHG---------------LQQYYVKLK  269

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
            D  ++ N +          + + +L+             +Q +IF ++   C  L Q  +
Sbjct  270  D--SEKNRK--------LFDLLDVLE------------FNQVVIFVKSVQRCMALAQLLV  307

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
            +Q          F  + +H      ER    ++FK    R L+ T++  RG+DI  V  V
Sbjct  308  EQN---------FPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIV  358

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
             N  +P++   Y+HR+ R GR    GLA++ V+ E +
Sbjct  359  FNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDEND  395


 Score = 43.9 bits (102),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 20/61 (33%), Positives = 36/61 (59%), Gaps = 0/61 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F +  + PE+ +A+ +  +  P+++Q E IP  + G DVL  A++G GKT  F +  +
Sbjct  44   SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL  103

Query  62   Q  62
            Q
Sbjct  104  Q  104


>sp|Q5RE47|DX39B_PONAB Spliceosome RNA helicase DDX39B OS=Pongo 
abelii OX=9601 GN=DDX39B PE=2 SV=1
Length=428

 Score = 102 bits (255),  Expect = 6e-22, Method: Compositional matrix adjust.
 Identities = 92/342 (27%), Positives = 152/342 (44%), Gaps = 67/342 (20%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGTP  347
             L++  +RELA Q     ++F KY+  P ++  +  GG++ +    VL+ N   IVVGTP
Sbjct  116  VLVMCHTRELAFQISKEYERFSKYM--PNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTP  173

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+  L     LNL  ++  +LDE D +L Q     + R   +I ++T   K  QV++ S
Sbjct  174  GRILALARNKSLNLKHIKHFILDECDKMLEQLD---MRRDVQEIFRMTPHEK--QVMMFS  228

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-----HVVVPVNPKTDRLWERLGKS  462
            ATL S +++ +  K M  P  + +  E  +  T+H     +V +  N K  +L++ L   
Sbjct  229  ATL-SKEIRPVCRKFMQDPMEIFVDDETKL--TLHGLQQYYVKLKDNEKNRKLFDLL---  282

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
                 DV                                   + +Q +IF ++   C  L
Sbjct  283  -----DVL----------------------------------EFNQVVIFVKSVQRCIAL  303

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
             Q  ++Q          F  + +H      ER    ++FK    R L+ T++  RG+DI 
Sbjct  304  AQLLVEQN---------FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIE  354

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
             V    N  +P++   Y+HR+ R GR    GLAI+ V+ E +
Sbjct  355  RVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEND  396


 Score = 43.5 bits (101),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 20/61 (33%), Positives = 36/61 (59%), Gaps = 0/61 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F +  + PE+ +A+ +  +  P+++Q E IP  + G DVL  A++G GKT  F +  +
Sbjct  45   SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL  104

Query  62   Q  62
            Q
Sbjct  105  Q  105


>sp|Q29024|DX39B_PIG Spliceosome RNA helicase DDX39B OS=Sus scrofa 
OX=9823 GN=DDX39B PE=3 SV=2
Length=428

 Score = 102 bits (255),  Expect = 6e-22, Method: Compositional matrix adjust.
 Identities = 92/342 (27%), Positives = 152/342 (44%), Gaps = 67/342 (20%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGTP  347
             L++  +RELA Q     ++F KY+  P ++  +  GG++ +    VL+ N   IVVGTP
Sbjct  116  VLVMCHTRELAFQISKEYERFSKYM--PNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTP  173

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+  L     LNL  ++  +LDE D +L Q     + R   +I ++T   K  QV++ S
Sbjct  174  GRILALARNKSLNLKHIKHFILDECDKMLEQLD---MRRDVQEIFRMTPHEK--QVMMFS  228

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-----HVVVPVNPKTDRLWERLGKS  462
            ATL S +++ +  K M  P  + +  E  +  T+H     +V +  N K  +L++ L   
Sbjct  229  ATL-SKEIRPVCRKFMQDPMEIFVDDETKL--TLHGLQQYYVKLKDNEKNRKLFDLL---  282

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
                 DV                                   + +Q +IF ++   C  L
Sbjct  283  -----DVL----------------------------------EFNQVVIFVKSVQRCIAL  303

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
             Q  ++Q          F  + +H      ER    ++FK    R L+ T++  RG+DI 
Sbjct  304  AQLLVEQN---------FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIE  354

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
             V    N  +P++   Y+HR+ R GR    GLAI+ V+ E +
Sbjct  355  RVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEND  396


 Score = 43.5 bits (101),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 20/61 (33%), Positives = 36/61 (59%), Gaps = 0/61 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F +  + PE+ +A+ +  +  P+++Q E IP  + G DVL  A++G GKT  F +  +
Sbjct  45   SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL  104

Query  62   Q  62
            Q
Sbjct  105  Q  105


>sp|P60024|DX39B_PANTR Spliceosome RNA helicase DDX39B OS=Pan 
troglodytes OX=9598 GN=DDX39B PE=3 SV=1
Length=428

 Score = 102 bits (255),  Expect = 6e-22, Method: Compositional matrix adjust.
 Identities = 92/342 (27%), Positives = 152/342 (44%), Gaps = 67/342 (20%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGTP  347
             L++  +RELA Q     ++F KY+  P ++  +  GG++ +    VL+ N   IVVGTP
Sbjct  116  VLVMCHTRELAFQISKEYERFSKYM--PNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTP  173

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+  L     LNL  ++  +LDE D +L Q     + R   +I ++T   K  QV++ S
Sbjct  174  GRILALARNKSLNLKHIKHFILDECDKMLEQLD---MRRDVQEIFRMTPHEK--QVMMFS  228

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-----HVVVPVNPKTDRLWERLGKS  462
            ATL S +++ +  K M  P  + +  E  +  T+H     +V +  N K  +L++ L   
Sbjct  229  ATL-SKEIRPVCRKFMQDPMEIFVDDETKL--TLHGLQQYYVKLKDNEKNRKLFDLL---  282

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
                 DV                                   + +Q +IF ++   C  L
Sbjct  283  -----DVL----------------------------------EFNQVVIFVKSVQRCIAL  303

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
             Q  ++Q          F  + +H      ER    ++FK    R L+ T++  RG+DI 
Sbjct  304  AQLLVEQN---------FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIE  354

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
             V    N  +P++   Y+HR+ R GR    GLAI+ V+ E +
Sbjct  355  RVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEND  396


 Score = 43.5 bits (101),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 20/61 (33%), Positives = 36/61 (59%), Gaps = 0/61 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F +  + PE+ +A+ +  +  P+++Q E IP  + G DVL  A++G GKT  F +  +
Sbjct  45   SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL  104

Query  62   Q  62
            Q
Sbjct  105  Q  105


>sp|Q5TM17|DX39B_MACMU Spliceosome RNA helicase DDX39B OS=Macaca 
mulatta OX=9544 GN=DDX39B PE=3 SV=1
Length=428

 Score = 102 bits (255),  Expect = 6e-22, Method: Compositional matrix adjust.
 Identities = 92/342 (27%), Positives = 152/342 (44%), Gaps = 67/342 (20%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGTP  347
             L++  +RELA Q     ++F KY+  P ++  +  GG++ +    VL+ N   IVVGTP
Sbjct  116  VLVMCHTRELAFQISKEYERFSKYM--PNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTP  173

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+  L     LNL  ++  +LDE D +L Q     + R   +I ++T   K  QV++ S
Sbjct  174  GRILALARNKSLNLKHIKHFILDECDKMLEQLD---MRRDVQEIFRMTPHEK--QVMMFS  228

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-----HVVVPVNPKTDRLWERLGKS  462
            ATL S +++ +  K M  P  + +  E  +  T+H     +V +  N K  +L++ L   
Sbjct  229  ATL-SKEIRPVCRKFMQDPMEIFVDDETKL--TLHGLQQYYVKLKDNEKNRKLFDLL---  282

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
                 DV                                   + +Q +IF ++   C  L
Sbjct  283  -----DVL----------------------------------EFNQVVIFVKSVQRCIAL  303

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
             Q  ++Q          F  + +H      ER    ++FK    R L+ T++  RG+DI 
Sbjct  304  AQLLVEQN---------FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIE  354

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
             V    N  +P++   Y+HR+ R GR    GLAI+ V+ E +
Sbjct  355  RVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEND  396


 Score = 43.5 bits (101),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 20/61 (33%), Positives = 36/61 (59%), Gaps = 0/61 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F +  + PE+ +A+ +  +  P+++Q E IP  + G DVL  A++G GKT  F +  +
Sbjct  45   SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL  104

Query  62   Q  62
            Q
Sbjct  105  Q  105


>sp|Q13838|DX39B_HUMAN Spliceosome RNA helicase DDX39B OS=Homo 
sapiens OX=9606 GN=DDX39B PE=1 SV=1
Length=428

 Score = 102 bits (255),  Expect = 6e-22, Method: Compositional matrix adjust.
 Identities = 92/342 (27%), Positives = 152/342 (44%), Gaps = 67/342 (20%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGTP  347
             L++  +RELA Q     ++F KY+  P ++  +  GG++ +    VL+ N   IVVGTP
Sbjct  116  VLVMCHTRELAFQISKEYERFSKYM--PNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTP  173

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+  L     LNL  ++  +LDE D +L Q     + R   +I ++T   K  QV++ S
Sbjct  174  GRILALARNKSLNLKHIKHFILDECDKMLEQLD---MRRDVQEIFRMTPHEK--QVMMFS  228

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-----HVVVPVNPKTDRLWERLGKS  462
            ATL S +++ +  K M  P  + +  E  +  T+H     +V +  N K  +L++ L   
Sbjct  229  ATL-SKEIRPVCRKFMQDPMEIFVDDETKL--TLHGLQQYYVKLKDNEKNRKLFDLL---  282

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
                 DV                                   + +Q +IF ++   C  L
Sbjct  283  -----DVL----------------------------------EFNQVVIFVKSVQRCIAL  303

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
             Q  ++Q          F  + +H      ER    ++FK    R L+ T++  RG+DI 
Sbjct  304  AQLLVEQN---------FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIE  354

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
             V    N  +P++   Y+HR+ R GR    GLAI+ V+ E +
Sbjct  355  RVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEND  396


 Score = 43.5 bits (101),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 20/61 (33%), Positives = 36/61 (59%), Gaps = 0/61 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F +  + PE+ +A+ +  +  P+++Q E IP  + G DVL  A++G GKT  F +  +
Sbjct  45   SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL  104

Query  62   Q  62
            Q
Sbjct  105  Q  105


>sp|Q5WR10|DX39B_CANLF Spliceosome RNA helicase DDX39B OS=Canis 
lupus familiaris OX=9615 GN=DDX39B PE=3 SV=1
Length=428

 Score = 102 bits (255),  Expect = 6e-22, Method: Compositional matrix adjust.
 Identities = 92/342 (27%), Positives = 152/342 (44%), Gaps = 67/342 (20%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGTP  347
             L++  +RELA Q     ++F KY+  P ++  +  GG++ +    VL+ N   IVVGTP
Sbjct  116  VLVMCHTRELAFQISKEYERFSKYM--PNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTP  173

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+  L     LNL  ++  +LDE D +L Q     + R   +I ++T   K  QV++ S
Sbjct  174  GRILALARNKSLNLKHIKHFILDECDKMLEQLD---MRRDVQEIFRMTPHEK--QVMMFS  228

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-----HVVVPVNPKTDRLWERLGKS  462
            ATL S +++ +  K M  P  + +  E  +  T+H     +V +  N K  +L++ L   
Sbjct  229  ATL-SKEIRPVCRKFMQDPMEIFVDDETKL--TLHGLQQYYVKLKDNEKNRKLFDLL---  282

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
                 DV                                   + +Q +IF ++   C  L
Sbjct  283  -----DVL----------------------------------EFNQVVIFVKSVQRCIAL  303

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
             Q  ++Q          F  + +H      ER    ++FK    R L+ T++  RG+DI 
Sbjct  304  AQLLVEQN---------FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIE  354

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
             V    N  +P++   Y+HR+ R GR    GLAI+ V+ E +
Sbjct  355  RVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEND  396


 Score = 43.5 bits (101),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 20/61 (33%), Positives = 36/61 (59%), Gaps = 0/61 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F +  + PE+ +A+ +  +  P+++Q E IP  + G DVL  A++G GKT  F +  +
Sbjct  45   SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL  104

Query  62   Q  62
            Q
Sbjct  105  Q  105


>sp|A3LST5|SUB2_PICST ATP-dependent RNA helicase SUB2 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=SUB2 PE=3 SV=1
Length=433

 Score = 102 bits (255),  Expect = 6e-22, Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 158/355 (45%), Gaps = 59/355 (17%)

Query  283  LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR---DQLSVLENG  339
            +P     L++  +RELA Q  N   +F KY+  P ++  +  GG   +   ++L   +  
Sbjct  114  VPGEISTLVICHTRELAYQIRNEYARFSKYM--PDVKTEVFYGGTPIKRDIEKLKSKDTC  171

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
              IVV TPGRL  LV+   + LS V+  V+DE D +L    S  + R    I + T   K
Sbjct  172  PHIVVATPGRLHALVNEKAIRLSNVKSFVIDECDKVLE---SIDMRRDVQDIFRATPHQK  228

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              QV++ SATL S +++ + +K M  P  +++  +D    T+H                L
Sbjct  229  --QVMMFSATL-SQEIRPVCKKFMQNP--LEIYVDDEAKLTLHG---------------L  268

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
             + +I+ ++   K+  R  ++                    +   + +Q IIF ++    
Sbjct  269  QQYYIKLEE---KEKNRKLSD-------------------LLDSLEFNQVIIFVKSTQRA  306

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            + L +               F  + +H      ER +    FK+ + R  + TDV  RGI
Sbjct  307  NELNKLLC---------SCNFPSIAVHSGLPQEERIERYRSFKEFNKRICVSTDVFGRGI  357

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            DI  +   IN  LP+E   Y+HR+GR GR    GLAISLV +++++       SR
Sbjct  358  DIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLAISLVGSKEDEEVLEKIQSR  412


 Score = 40.0 bits (92),  Expect = 0.064, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 34/59 (58%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +  + PE+ +A+ +  +  P+++Q   IP  + G DVL  A++G GKT  F +  +Q
Sbjct  51   FRDFLLKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQ  109


>sp|Q5AVM1|DBP5_EMENI ATP-dependent RNA helicase dbp5 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=dbp5 PE=3 SV=1
Length=477

 Score = 103 bits (257),  Expect = 6e-22, Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 149/359 (42%), Gaps = 90/359 (25%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+ALI+ P+RELA Q +  I+   K++D      L I   V A            +VVGT
Sbjct  144  PQALILAPTRELARQIVGVIQVMGKFLDG-----LHIGTAVPADTNARPTRMEASVVVGT  198

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            PG + D++    +  ++++ +VLDEAD +L  QG  D   R+   +P      + +QV++
Sbjct  199  PGTVMDMIKKRIMVAAKLKVIVLDEADNMLDQQGLGDQCIRVKALLP------RDIQVVL  252

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT                            P  VH       P  + L          
Sbjct  253  FSATF---------------------------PAHVHQYASKFAPAANELT---------  276

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ---------AIIFCRTK  516
                             E+  E IK L  + A    K   + Q         +IIF +T+
Sbjct  277  -------------LQHEELTVEGIKQLYLDCASEEDKYRTLVQLYGLLTVGSSIIFVKTR  323

Query  517  IDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAA  576
                 +E+  + +G          +   L G  +  +R Q +++F+ G  + LI T+V A
Sbjct  324  ASAVEIERRMVAEG---------HTVASLTGGIEGSQRDQIIDQFRAGHAKVLITTNVLA  374

Query  577  RGIDIHGVPYVINVTLPD-----------EKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            RGID+  V  VIN  +P+           + Q Y+HRIGR GR  R+G++IS V+  +E
Sbjct  375  RGIDVSTVSMVINYDIPELHQPPNRPRQADFQTYLHRIGRTGRFGRVGVSISFVSNREE  433


 Score = 42.4 bits (98),  Expect = 0.013, Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 39/60 (65%), Gaps = 2/60 (3%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSIPVI  61
            F ++G+ P I Q +  M++  P+ IQ  ++PL++G    +++  +++G+GKT AF + ++
Sbjct  71   FEDLGLDPRILQGLSAMNFRKPSKIQERALPLLMGNPPKNLVGQSQSGTGKTAAFVLNIL  130


>sp|Q5RDL2|DDX24_PONAB ATP-dependent RNA helicase DDX24 OS=Pongo 
abelii OX=9601 GN=DDX24 PE=2 SV=1
Length=859

 Score = 105 bits (261),  Expect = 6e-22, Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 156/351 (44%), Gaps = 65/351 (19%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR  349
            L++ P+RELA Q   +I    ++     ++  +++GG++ + Q  +L    +IVV TPGR
Sbjct  391  LVLTPTRELAVQVKQHIDAVARFTG---IKTAILVGGMSTQKQQRMLNRRPEIVVATPGR  447

Query  350  LDDLVSTGKL---NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            L +L+        NL Q+R LV+DEAD ++ +G+   ++++   +     + KR Q +V 
Sbjct  448  LWELIKEKHYHLRNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLNDSQYNPKR-QTLVF  506

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SATL    V +   +I+H                 H   +    K D L +++G      
Sbjct  507  SATLTL--VHQAPARILH---------------KKHTKKMDKTAKLDLLMQKIGM-----  544

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                     +P         + I + + E  V  + E K     I C T      L  + 
Sbjct  545  -------RGKP---------KVIDLTRNEATVETLTETK-----IHCETDEKDFYLYYFL  583

Query  527  IQQGGGPDKKGHQFSCV---------------CLHGDRKPHERKQNLERFKKGDVRFLIC  571
            +Q  G      +  SC+                LH      +R +NLE+F + +   L+ 
Sbjct  584  MQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLA  643

Query  572  TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            TDVAARG+DI  V +VI+  +P   + YVHR GR  RA   GL++ L+  E
Sbjct  644  TDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLIGPE  694


 Score = 44.3 bits (103),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 26/67 (39%), Positives = 42/67 (63%), Gaps = 1/67 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESI-PLILGGGDVLMAAETGSGKTGAFSIP  59
            ++A+ ++ V   + +A+  + +  PT IQ  ++ P I    D+L AAETGSGKT AF+IP
Sbjct  191  VSAWKDLFVPRPVLRALSFLGFSAPTPIQVLTLAPAIRDKLDILGAAETGSGKTLAFAIP  250

Query  60   VIQIVYE  66
            +I  V +
Sbjct  251  MIHAVLQ  257


>sp|Q27268|DX39B_DROME ATP-dependent RNA helicase WM6 OS=Drosophila 
melanogaster OX=7227 GN=Hel25E PE=1 SV=1
Length=424

 Score = 102 bits (254),  Expect = 8e-22, Method: Compositional matrix adjust.
 Identities = 99/344 (29%), Positives = 154/344 (45%), Gaps = 63/344 (18%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGV-DIV  343
            N    L++  +RELA Q     ++F KY+  P ++  +  GG+A +     L++G   IV
Sbjct  109  NTCHVLVMCHTRELAFQISKEYERFSKYM--PTVKVAVFFGGMAIQKDEETLKSGTPHIV  166

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            VGTPGR+  L+   KLNL  ++  VLDE D +L Q     + R   +I + T  GK  QV
Sbjct  167  VGTPGRILALIRNKKLNLKLLKHFVLDECDKMLEQLD---MRRDVQEIFRSTPHGK--QV  221

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVP---DTVHHVVVPVNPKTDRLWERLG  460
            ++ SATL S D++ + +K M  P  V +  E  +       H+V +  N K  +L+E L 
Sbjct  222  MMFSATL-SKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVNLKENEKNKKLFELL-  279

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
                   DV                                   + +Q +IF ++   C 
Sbjct  280  -------DV----------------------------------LEFNQVVIFVKSVQRCV  298

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             L Q   +Q          F  + +H      ER    ++FK    R L+ T++  RG+D
Sbjct  299  ALSQLLTEQN---------FPAIGIHRGMTQEERLNRYQQFKDFQKRILVATNLFGRGMD  349

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            I  V  V N  +P++   Y+HR+ R GR    GLAI+ V+ E +
Sbjct  350  IERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEND  393


 Score = 43.9 bits (102),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 20/61 (33%), Positives = 36/61 (59%), Gaps = 0/61 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F +  + PEI +A+ +  +  P+++Q E IP  + G D+L  A++G GKT  F +  +
Sbjct  41   SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL  100

Query  62   Q  62
            Q
Sbjct  101  Q  101


>sp|A1DMT9|MAK5_NEOFI ATP-dependent RNA helicase mak5 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=mak5 
PE=3 SV=1
Length=777

 Score = 104 bits (259),  Expect = 9e-22, Method: Compositional matrix adjust.
 Identities = 101/375 (27%), Positives = 163/375 (43%), Gaps = 50/375 (13%)

Query  265  YIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
            Y+ K +   +A+  +     + P ALI+ P+RELA Q   +I +          R  L+ 
Sbjct  263  YLEKKRDDISAEKEKKSEKDSTPIALILSPTRELAHQLSKHIGELIAQAPGVNARIALLT  322

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYS  381
            GG++ + Q  +L +G DIV+GTPGR+ +++STG+     + Q++FLV+DEAD LLS+G+ 
Sbjct  323  GGLSVQKQQRLL-SGADIVIGTPGRVWEILSTGQGLIRKMQQIKFLVVDEADRLLSEGHF  381

Query  382  DFINRMHNQIPQVTSDGK-----------------RLQVIVCSATLHSFDVKKLSEKIMH  424
              +  + N + +V  DG+                   Q +V SAT H    + L +K+  
Sbjct  382  KEVEEILNALDRV-EDGEVPGGENQASEEESDPSSERQTLVFSATFH----RDLQQKLAG  436

Query  425  FPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEM  484
               W    G D         V+      D L ++L     +   +     ++   N  E 
Sbjct  437  KGKWT---GGD---------VMDKKESMDYLLQKLNFREEKPKFIDMNPISQMADNLKEG  484

Query  485  WSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC  544
              E   + K  +    +  H   + ++F  + I         +Q    P         + 
Sbjct  485  IVECGAMEKDLFLYTLLLYHPKHRTLVFTNS-ISAVRRLTKLLQTLQLP--------ALA  535

Query  545  LHGDRKPHERKQNLERFKKGD---VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH  601
            LH       R +++ERF          L+ TDVAARG+DI G+  VI+   P     YVH
Sbjct  536  LHSSMAQKARLRSVERFSSPSSDPSTILVATDVAARGLDIKGINLVIHYHAPRTADTYVH  595

Query  602  RIGRVGRAERMGLAI  616
            R GR  RA   G ++
Sbjct  596  RSGRTARAGASGKSV  610


 Score = 60.5 bits (145),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 32/87 (37%), Positives = 49/87 (56%), Gaps = 0/87 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++A+  +G+ PEI   + +M +  PT +Q   IP IL G DV+  A TGSGKT AF IP+
Sbjct  200  VSAWDSLGLSPEILTGLSKMKFASPTSVQEACIPQILEGHDVIGKASTGSGKTLAFGIPI  259

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASV  87
            ++   E  +D    +K K + K    +
Sbjct  260  LEHYLEKKRDDISAEKEKKSEKDSTPI  286


>sp|Q40466|IF413_TOBAC Eukaryotic initiation factor 4A-13 (Fragment) 
OS=Nicotiana tabacum OX=4097 PE=2 SV=1
Length=355

 Score = 100 bits (250),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 136/303 (45%), Gaps = 60/303 (20%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+RELA+Q    ++    Y+    ++    +GG + R+   +L++GV +VVGTP
Sbjct  110  QALVLAPTRELAQQIEKVMRALGDYL---GVKVHACVGGTSVREDQRILQSGVHVVVGTP  166

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ D++    L    ++  VLDEAD +LS+G+ D I  +   +P       ++QV V S
Sbjct  167  GRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLP------PKIQVGVFS  220

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+   +  +++ K M+ P  + +K +D   + +    V V+                  
Sbjct  221  ATMPP-EALEITRKFMNQPVRILVKRDDVTLEGIKQFYVNVD------------------  261

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                           E W   ++ L   Y   AI      Q++IF  T+   D L     
Sbjct  262  --------------KEEWK--LETLCDLYETLAIT-----QSVIFVNTRRKVDWL-----  295

Query  528  QQGGGPDK-KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                  DK +    +    HGD   + R   +  F+ G  R LI TD+ ARGID+  V  
Sbjct  296  -----TDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL  350

Query  587  VIN  589
            VIN
Sbjct  351  VIN  353


 Score = 33.9 bits (76),  Expect = 6.2, Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 0/60 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +F  MG+   + + +    +  P+ IQ   I     G DV+  A++G+GKT  F   V+Q
Sbjct  41  SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQ  100


>sp|A6ZXP4|SUB2_YEAS7 ATP-dependent RNA helicase SUB2 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=SUB2 PE=3 SV=1
Length=446

 Score = 102 bits (254),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 156/346 (45%), Gaps = 59/346 (17%)

Query  283  LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN---G  339
            +P     +++  +RELA Q  N   +F KY+  P ++  +  GG        +L+N    
Sbjct  127  VPGEVAVVVICNARELAYQIRNEYLRFSKYM--PDVKTAVFYGGTPISKDAELLKNKDTA  184

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
              IVV TPGRL  LV    ++LS V+  V+DE D +L +     + R   +I + T   K
Sbjct  185  PHIVVATPGRLKALVREKYIDLSHVKNFVIDECDKVLEELD---MRRDVQEIFRATPRDK  241

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              QV++ SATL S +++ +  + +  P  +++  +D    T+H                L
Sbjct  242  --QVMMFSATL-SQEIRPICRRFLQNP--LEIFVDDEAKLTLHG---------------L  281

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
             + +I+ ++   ++  R  A                   + + + + +Q IIF ++    
Sbjct  282  QQYYIKLEE---REKNRKLA-------------------QLLDDLEFNQVIIFVKSTTRA  319

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            + L +               F  + +HG  K  ER    + FK  + R  + TDV  RGI
Sbjct  320  NELTKLL---------NASNFPAITVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGI  370

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            DI  +   IN  L +E   Y+HR+GR GR    GLAIS V++++++
Sbjct  371  DIERINLAINYDLTNEADQYLHRVGRAGRFGTKGLAISFVSSKEDE  416


 Score = 43.5 bits (101),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +  + PE+++A+ +  +  P+++Q  +IP  + G DVL  A++G GKT  F +  +Q
Sbjct  64   FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQ  122


>sp|Q9H8H2|DDX31_HUMAN Probable ATP-dependent RNA helicase DDX31 
OS=Homo sapiens OX=9606 GN=DDX31 PE=1 SV=2
Length=851

 Score = 104 bits (259),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 94/364 (26%), Positives = 169/364 (46%), Gaps = 49/364 (13%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P AL++ P+RELA Q+ + +++  K      +   +++GG   + + + L  G++I++
Sbjct  304  DGPYALVLVPTRELALQSFDTVQKLLKPFT--WIVPGVLMGGEKRKSEKARLRKGINILI  361

Query  345  GTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
             TPGRL D + ST  ++ S++R+LV DEAD +L  G+   I  + N    V ++ ++ Q 
Sbjct  362  STPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILN---AVNAECQKRQN  418

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            ++ SATL +  V +L++  +H P  +      SV D  H     +NPK   + E      
Sbjct  419  VLLSATL-TEGVTRLADISLHDPVSI------SVLDKSHDQ---LNPKDKAVQEVCPPPA  468

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGE--------YAVRAIKEHKMDQAIIFCRT  515
                D  A          PE   + + ++  +        + ++  K  +  + ++F  +
Sbjct  469  GDKLDSFA---------IPESLKQHVTVVPSKLRLVCLAAFILQKCKFEEDQKMVVFFSS  519

Query  516  KIDCDNLE-------QYFIQQGGGP-----DKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
               C+ +E       Q  +   G P          +   + LHG  +  ER    + F  
Sbjct  520  ---CELVEFHYSLFLQTLLSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSH  576

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA-TE  622
                 L+CTDVAARG+D+  V +++    P     Y+HRIGR  R    G ++ ++A +E
Sbjct  577  SRRGVLLCTDVAARGLDLPQVTWIVQYNAPSSPAEYIHRIGRTARIGCHGSSLLILAPSE  636

Query  623  KEKV  626
             E V
Sbjct  637  AEYV  640


 Score = 53.5 bits (127),  Expect = 6e-06, Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 42/64 (66%), Gaps = 5/64 (8%)

Query  2    AAFSEMGVMPEIAQAVE---EMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSI  58
            AAF E+G+ P +   +    +M  +  T +Q +SIP++L G D L+ ++TGSGKT A+ I
Sbjct  230  AAFHELGLHPHLISTINTVLKMSSM--TSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCI  287

Query  59   PVIQ  62
            PV+Q
Sbjct  288  PVVQ  291


>sp|Q07478|SUB2_YEAST ATP-dependent RNA helicase SUB2 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SUB2 
PE=1 SV=1
Length=446

 Score = 102 bits (254),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 156/346 (45%), Gaps = 59/346 (17%)

Query  283  LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN---G  339
            +P     +++  +RELA Q  N   +F KY+  P ++  +  GG        +L+N    
Sbjct  127  VPGEVAVVVICNARELAYQIRNEYLRFSKYM--PDVKTAVFYGGTPISKDAELLKNKDTA  184

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
              IVV TPGRL  LV    ++LS V+  V+DE D +L +     + R   +I + T   K
Sbjct  185  PHIVVATPGRLKALVREKYIDLSHVKNFVIDECDKVLEELD---MRRDVQEIFRATPRDK  241

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              QV++ SATL S +++ +  + +  P  +++  +D    T+H                L
Sbjct  242  --QVMMFSATL-SQEIRPICRRFLQNP--LEIFVDDEAKLTLHG---------------L  281

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
             + +I+ ++   ++  R  A                   + + + + +Q IIF ++    
Sbjct  282  QQYYIKLEE---REKNRKLA-------------------QLLDDLEFNQVIIFVKSTTRA  319

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            + L +               F  + +HG  K  ER    + FK  + R  + TDV  RGI
Sbjct  320  NELTKLL---------NASNFPAITVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGI  370

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            DI  +   IN  L +E   Y+HR+GR GR    GLAIS V++++++
Sbjct  371  DIERINLAINYDLTNEADQYLHRVGRAGRFGTKGLAISFVSSKEDE  416


 Score = 43.5 bits (101),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +  + PE+++A+ +  +  P+++Q  +IP  + G DVL  A++G GKT  F +  +Q
Sbjct  64   FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQ  122


>sp|O00148|DX39A_HUMAN ATP-dependent RNA helicase DDX39A OS=Homo 
sapiens OX=9606 GN=DDX39A PE=1 SV=2
Length=427

 Score = 102 bits (253),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 154/337 (46%), Gaps = 57/337 (17%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGTP  347
             L++  +RELA Q     ++F KY+  P ++  +  GG++ +    VL+ N   +VVGTP
Sbjct  115  VLVMCHTRELAFQISKEYERFSKYM--PSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTP  172

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+  LV     +L  V+  VLDE D +L Q     + R   +I ++T   K  Q ++ S
Sbjct  173  GRILALVRNRSFSLKNVKHFVLDECDKMLEQLD---MRRDVQEIFRLTPHEK--QCMMFS  227

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL S D++ +  K M  P  V +  E  +  T+H                L + +++  
Sbjct  228  ATL-SKDIRPVCRKFMQDPMEVFVDDETKL--TLHG---------------LQQYYVKLK  269

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
            D  ++ N +          + + +L+             +Q IIF ++   C  L Q  +
Sbjct  270  D--SEKNRK--------LFDLLDVLE------------FNQVIIFVKSVQRCMALAQLLV  307

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
            +Q          F  + +H      ER    ++FK    R L+ T++  RG+DI  V  V
Sbjct  308  EQN---------FPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIV  358

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
             N  +P++   Y+HR+ R GR    GLAI+ V+ E +
Sbjct  359  FNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEND  395


 Score = 43.9 bits (102),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 20/61 (33%), Positives = 36/61 (59%), Gaps = 0/61 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F +  + PE+ +A+ +  +  P+++Q E IP  + G DVL  A++G GKT  F +  +
Sbjct  44   SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL  103

Query  62   Q  62
            Q
Sbjct  104  Q  104


>sp|Q5A9Z6|FAL1_CANAL ATP-dependent RNA helicase FAL1 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=FAL1 
PE=3 SV=1
Length=399

 Score = 101 bits (251),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 58/138 (42%), Positives = 78/138 (57%), Gaps = 14/138 (10%)

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
            QA+IFC TK+  + L             K   F+ V +HGD K  ER   +  F++G+ R
Sbjct  267  QAVIFCNTKLKVNWL---------ADQMKKQNFTVVAMHGDMKQDERDSIMNDFRRGNSR  317

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             LI TDV ARGID+  V  VIN  LP +K+NY+HRIGR GR  R G AI+L+   K+ V 
Sbjct  318  VLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGTAINLIT--KDDV-  374

Query  628  YHVCSSRGKGCYNTRLKE  645
              V     +  Y+T++KE
Sbjct  375  --VTLKEFEKYYSTKIKE  390


 Score = 66.6 bits (161),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 59/105 (56%), Gaps = 3/105 (3%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+RELA Q  N +K    Y++   +     IGG    + +  L+ G  IV GTP
Sbjct  96   QALILSPTRELAIQIQNVVKHLGDYMN---IHTHACIGGKNVGEDVKKLQQGQQIVSGTP  152

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP  392
            GR+ D++    L    ++ L+LDEAD L ++G+ + I  ++  +P
Sbjct  153  GRVIDVIKRRNLQTRNIKVLILDEADELFTKGFKEQIYEIYKHLP  197


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 37/62 (60%), Gaps = 0/62 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  M + P++ + +    +  P+ IQ+ +I  I+ G D +  A++G+GKT  FSI +++
Sbjct  27  TFESMNLKPDLLKGIYAYGFETPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLE  86

Query  63  IV  64
           ++
Sbjct  87  VI  88


>sp|Q6FL17|SUB2_CANGA ATP-dependent RNA helicase SUB2 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=SUB2 PE=3 SV=1
Length=439

 Score = 102 bits (253),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 92/346 (27%), Positives = 155/346 (45%), Gaps = 59/346 (17%)

Query  283  LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN---G  339
            +P     +++  +RELA Q  N   +F KY+  P +R  +  GG        +L+N    
Sbjct  120  VPGEVSVVVICNARELAYQIRNEYLRFSKYM--PDVRTAVFYGGTPIAKDAELLKNKDTA  177

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
              IVV TPGRL  LV    ++LS V+  V+DE D +L +     + R   +I + T   K
Sbjct  178  PHIVVATPGRLKALVRDKMIDLSHVKNFVIDECDKVLEELD---MRRDVQEIFRATPRDK  234

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              QV++ SATL S +++ +  + +  P  +++  +D    T+H                L
Sbjct  235  --QVMMFSATL-SQEIRPICRRFLQNP--LEIFVDDEAKLTLHG---------------L  274

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
             + +I+ ++   ++  R  A                   + + + + +Q IIF ++    
Sbjct  275  QQYYIKLEE---REKNRKLA-------------------QLLDDLEFNQVIIFVKSTSRA  312

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            + L +               F  + +HG  K  ER    + FK  + R  + TDV  RGI
Sbjct  313  NELTKLL---------NASNFPAITVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGI  363

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            DI  +   IN  L +E   Y+HR+GR GR    GLAIS V+ ++++
Sbjct  364  DIERINLAINYDLLNEADQYLHRVGRAGRFGTKGLAISFVSNKEDE  409


 Score = 43.5 bits (101),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +  + PE+++A+ +  +  P+++Q  +IP  + G DVL  A++G GKT  F +  +Q
Sbjct  57   FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQ  115


>sp|Q84T03|RH27_ORYSJ DEAD-box ATP-dependent RNA helicase 27 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os03g0802700 PE=3 
SV=1
Length=590

 Score = 103 bits (256),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 93/337 (28%), Positives = 156/337 (46%), Gaps = 62/337 (18%)

Query  282  FLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGV  340
            F+P N    ++V P+RELA QT N  K+  KY          IIGG   R +   L  GV
Sbjct  163  FMPRNGTGVVVVCPTRELAIQTHNVAKELMKYHSQTLG---YIIGGNGRRGEADQLAKGV  219

Query  341  DIVVGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
            +++V TPGRL D L +T      +++ L++DEAD LL Q + + + ++  ++P       
Sbjct  220  NLLVATPGRLLDHLQNTKGFIYRRLKCLIIDEADRLLEQNFEEDMKQIFKRLPL------  273

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              Q ++ SAT         +E++  F      K E+S    V+  V   + +T+   E L
Sbjct  274  NRQTVLFSATQ--------TEQVKEFAKLSFEKNEESTSKPVY--VGVDDAETNATVEGL  323

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
             + +   D                  +    +L   YA    K++K  + ++F  +   C
Sbjct  324  QQGYCVIDS-----------------ARRFLVL---YAFLKKKQNK--KVMVFFSS---C  358

Query  520  DNLEQY-----FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
            ++++ +     F+Q             C  +HG +K  +R      F K +   L+CT+V
Sbjct  359  NSVKFHAELLNFLQ-----------IECSDIHGKQKQQKRTTTFFNFCKAEKGILLCTNV  407

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
            AARG+DI  V +++    PDE ++Y+HR+GR  R E+
Sbjct  408  AARGLDIPDVDFIVQYDPPDEPKDYIHRVGRTARGEK  444


 Score = 68.9 bits (167),  Expect = 8e-11, Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 45/62 (73%), Gaps = 0/62 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FSE+GV    A+A+ EM++   T IQA SIP +L G DV+ AA+TGSGKT AF IP I++
Sbjct  98   FSELGVSEPTARAIREMNYTYLTQIQARSIPHLLNGKDVMGAAKTGSGKTLAFLIPAIEM  157

Query  64   VY  65
            ++
Sbjct  158  LH  159


>sp|Q6CKI1|PRP5_KLULA Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 
GN=PRP5 PE=3 SV=1
Length=812

 Score = 103 bits (257),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 86/345 (25%), Positives = 154/345 (45%), Gaps = 55/345 (16%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P  LI+ P+RELA Q      +F K      +  +  +GG   + Q++ L+ GVDI+V T
Sbjct  321  PIGLILTPTRELAVQIQEEALKFCK---GSGISSICCVGGSELKQQINELKRGVDIIVAT  377

Query  347  PGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            PGR  DL++      L+ +++ F+V+DEAD L   G+   +N++   I          Q 
Sbjct  378  PGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDK------QC  431

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            ++ SAT  S  +K  + + +  P  + +  +  + + +   V           +   + H
Sbjct  432  VLFSATFPS-KLKHFASRTLKNPIQITINSKSLINENIQQRV-----------QIFDEEH  479

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
            ++ + +  +             S+ + + +GE           ++ IIF  ++  CD L 
Sbjct  480  VKFEFLLKR------------LSDRLALHRGED----------EKTIIFVGSQQLCDLLY  517

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
               +  G          +   +H  +   ER +NL++FK+ D   LICT+V +RG+++  
Sbjct  518  DELLLNG---------ITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPE  568

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            V  VI          YVH +GR GR    G+A+S V  ++    Y
Sbjct  569  VSLVIIYNAAKTIAQYVHTVGRTGRGTNNGVALSFVMVDELASAY  613


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 23/63 (37%), Positives = 42/63 (67%), Gaps = 1/63 (2%)

Query  1    MAAFSEMGVMPEIAQAVE-EMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
            +  +S++G+  EI   +  E+ ++  T IQ ++IP I+ G DV+  ++TGSGKT AF +P
Sbjct  244  VTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLP  303

Query  60   VIQ  62
            +++
Sbjct  304  LVR  306


>sp|O01836|GLH3_CAEEL ATP-dependent RNA helicase glh-3 OS=Caenorhabditis 
elegans OX=6239 GN=glh-3 PE=1 SV=1
Length=720

 Score = 103 bits (256),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 91/338 (27%), Positives = 149/338 (44%), Gaps = 49/338 (14%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+ +I+ P+RELA+Q  N  ++F  Y    +++   + GG+      S +  G  I+VGT
Sbjct  376  PRCIILTPTRELADQIYNEGRKFS-YQSVMEIKP--VYGGINVGYNKSQIMKGCTIIVGT  432

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
             GR+      G + L + R+LVLDEAD ++ S G+   I ++ N      +D +  Q ++
Sbjct  433  IGRVKHFCEDGAIKLDKCRYLVLDEADRMIDSMGFGPEIEQIINYKNMPKNDKR--QTMM  490

Query  406  CSATLHSFDVKKLSEKIM---HFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
             SAT  S  V++ + K++   +    +D  G  +        +     K D+L + LG  
Sbjct  491  FSATFPS-SVQEAARKLLREDYTMITIDKIGAANKCVIQEFELCDRTSKVDKLLKLLG--  547

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
             I  D    + N+                           +  + + I+F   +   D L
Sbjct  548  -IDIDTYTTEKNS---------------------------DVFVKKTIVFVAQQKMADTL  579

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
                            Q   + +HG R+  ER   L+ F+ G    LI T V  RG+DI 
Sbjct  580  ASIM---------SAAQVPAITIHGAREQKERSAALKLFRSGAKPVLIATAVVERGLDIK  630

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            GV +VIN  +P+   +Y+HRIGR GR    G A S ++
Sbjct  631  GVDHVINYDMPNNIDDYIHRIGRTGRVGNSGRATSFIS  668


 Score = 50.1 bits (118),  Expect = 8e-05, Method: Compositional matrix adjust.
 Identities = 27/76 (36%), Positives = 45/76 (59%), Gaps = 3/76 (4%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI-  61
            +FS+  +   + + VE   +   T IQ  ++PL+  G D+L  A+TGSGKT AF +P++ 
Sbjct  299  SFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLPIMS  358

Query  62   QIVYETLKDQQEGKKG  77
            +++ E  KD   G +G
Sbjct  359  RLILE--KDLNYGAEG  372


>sp|A7TEG8|MAK5_VANPO ATP-dependent RNA helicase MAK5 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=MAK5 PE=3 SV=1
Length=763

 Score = 103 bits (257),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 102/403 (25%), Positives = 175/403 (43%), Gaps = 49/403 (12%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL-IIGGVAARDQLSVL--ENGVDI  342
            AP  LI  P+RELA+Q  +++++    I +     +L + GG++ + Q  +L  E    I
Sbjct  262  APIGLIFTPTRELAKQVTDHLRKIASLIVDKSPHAILSLTGGLSIQKQERLLKYEGSGRI  321

Query  343  VVGTPGRLDDLVSTGKL---NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
            VV TPGR  +L+   K      SQ+  LVLDEAD LL  G+ D    +   + + + + K
Sbjct  322  VVATPGRFLELIEKDKTLVERFSQISTLVLDEADRLLQDGHFDEFENILKYLGRESKNRK  381

Query  400  -RLQVIVCSATLHSFDVKKLSE---KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL  455
               Q ++ SAT  +    KLS    K M  P+    K E+ +   + H++  ++ K+  +
Sbjct  382  HNWQTMIFSATFATDLFDKLSHASWKNMKTPS----KNENEMEIVLKHLMTKIHFKSKPI  437

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRT  515
                         + A    +  +   E   E     +  +    +  +   + +IFC  
Sbjct  438  L------------IDANPEDKVSSQIKESLIECAATERDLFCYYFVSMYP-GKTLIFCNA  484

Query  516  KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK--------GDVR  567
                  L  Y               SC  +H       R +NLER+++        G   
Sbjct  485  IDSVKKLTAYL---------NNLNISCFQIHSSMTQKNRLRNLERYQQQSEKNKILGKPT  535

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK----  623
             L+ +DVAARG+DI G+ +VI+  LP     Y+HR GR  RA   G+++ + + E+    
Sbjct  536  VLVGSDVAARGLDIPGIQHVIHYHLPRTADVYIHRSGRTARANNEGVSVMICSPEEAMGP  595

Query  624  -EKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEH  665
              K+   + +  GK     + K     T+   +  +LS+++E 
Sbjct  596  LRKLRKTLANKSGKDIIMGKKKWQKTVTMLPIDDTILSQLKER  638


 Score = 47.4 bits (111),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 28/38 (74%), Gaps = 0/38 (0%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            PT IQ E+IP+ L G D++  A TGSGKT A+ IP+I+
Sbjct  215  PTLIQEEAIPMALKGEDIMGKASTGSGKTLAYGIPIIE  252


>sp|Q6DRI7|DDX51_DANRE ATP-dependent RNA helicase DDX51 OS=Danio 
rerio OX=7955 GN=ddx51 PE=2 SV=1
Length=652

 Score = 103 bits (256),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 97/361 (27%), Positives = 161/361 (45%), Gaps = 36/361 (10%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG---VAARDQLSVLENGV----  340
            +AL V P++ELA+Q  N    F  Y +   L+ ++I G     A +  LS +  GV    
Sbjct  274  RALAVLPTKELAQQVSNV---FSAYTEGSSLKVVMITGQKSFAAEQTALSEIRGGVSHSM  330

Query  341  -DIVVGTPGRLDDLVS-TGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQI---PQVT  395
             DIVV TPGRL D ++     +L  +RFL++DEAD ++   +  +++++   +   P  T
Sbjct  331  ADIVVATPGRLVDHINKNSSFSLQHLRFLIIDEADRMIDSMHQSWLSQVTKAVYSTPGET  390

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL  455
                  + +    T  S    ++  + + F   +    E      +H           RL
Sbjct  391  HTSVFRRTVPGPITAASLSPPQIPLQKLLFSATLTQNPEKLQLLDLHQ---------PRL  441

Query  456  WERLGKSHIRTDD-VHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
            +     +H  TD+   ++D         E +       K    +  +   K   A+ F  
Sbjct  442  F---SSTHSLTDNPAQSQDTFHFPQGLSEYYVPCTFSKKPLIILHFLLRLKFSPALCFTN  498

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
            ++     L    ++  GG +    +FS     G+R     ++ L+ F+KG +  LI TD 
Sbjct  499  SREGAHRL-YLLVKLFGGVEVA--EFSSKLSPGER-----QKTLKDFEKGKIPLLISTDA  550

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            AARGIDI+GV  VIN   P   + Y+HR+GR  RA + GLA + +   +EK +  + S  
Sbjct  551  AARGIDINGVKCVINYDAPQYIRTYIHRVGRTARAGKAGLAFTFLLKVQEKRFLKMVSDA  610

Query  635  G  635
            G
Sbjct  611  G  611


 Score = 38.9 bits (89),  Expect = 0.18, Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 48/112 (43%), Gaps = 20/112 (18%)

Query  28   IQAESIPLIL---GGG-----------DVLMAAETGSGKTGAFSIPVIQIVYETLKDQQE  73
            +QAE IP IL   G G           DV ++A TGSGKT AF IPV+Q + + +  Q  
Sbjct  215  VQAEVIPAILESVGSGLLVGPGGYRPRDVCVSAPTGSGKTLAFVIPVVQALSKRVVRQVR  274

Query  74   GKKGKTTIKTGASVLNKWQMNPYDRGSAFAI----GSDGLCCQSREVKEWHG  121
                  T +    V N +  + Y  GS+  +    G      +   + E  G
Sbjct  275  ALAVLPTKELAQQVSNVF--SAYTEGSSLKVVMITGQKSFAAEQTALSEIRG  324


>sp|Q6FQZ0|DBP8_CANGA ATP-dependent RNA helicase DBP8 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP8 PE=3 SV=1
Length=437

 Score = 101 bits (251),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 144/348 (41%), Gaps = 69/348 (20%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P     +++ P+RELA Q          Y++   +R  L++GG +  DQ   L+     +
Sbjct  75   PTGMFGIVLTPTRELAMQIAEQFTALGSYMN---IRVALVVGGESIVDQALQLQRKPHFI  131

Query  344  VGTPGRL--------DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
            + TPGRL        DD V      L +V++LVLDEAD LL++ +S+ +      +P   
Sbjct  132  IATPGRLAHHILNSGDDTVG----GLKRVKYLVLDEADILLTETFSNDLKTCVGALP---  184

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSV----PDTVHHVVVPVNPK  451
               ++ Q ++ +AT+    V+ L +  +        KG+  +     + V +V +P    
Sbjct  185  -PKEKRQTLLFTATITD-QVRALQDAPVQ-------KGKQPLFCYEVENVDNVAIPSTLN  235

Query  452  TDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAII  511
            T+ +                          PE   EA       Y +   + +    AII
Sbjct  236  TEYVL------------------------VPEHVKEAYL-----YQLLTCESYANSTAII  266

Query  512  FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLIC  571
            F       + L +           K        LH      ER  ++ RF+    R LI 
Sbjct  267  FVNRTTAAEVLRRTL---------KALDVRVASLHSQMPQQERTNSMHRFRANAARVLIA  317

Query  572  TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            TDVA+RG+DI  V  VIN  +P +   ++HR GR  RA R G AIS +
Sbjct  318  TDVASRGLDIPTVELVINYDIPSDPDTFIHRSGRTARAGRKGDAISFI  365


 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 23/58 (40%), Positives = 37/58 (64%), Gaps = 0/58 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
           F ++G+   + ++++ M    PT IQ+  IP IL G D +  A+TGSGKT AF+ P++
Sbjct  11  FRQLGLSKWLVESLDAMRIRTPTAIQSGCIPEILKGRDCIGGAKTGSGKTIAFAGPML  68


>sp|Q6BTL5|DRS1_DEBHA ATP-dependent RNA helicase DRS1 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DRS1 PE=3 SV=1
Length=771

 Score = 103 bits (256),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 96/393 (24%), Positives = 183/393 (47%), Gaps = 56/393 (14%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            ++ + +++ P+RELA Q  +  K+  ++++N  L   L +GG+  R Q   L+   DIV+
Sbjct  328  SSTRVIVLAPTRELAIQVCDVGKKIGQFVNN--LNFGLAVGGLNLRQQEQQLKTRPDIVI  385

Query  345  GTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
             TPGRL D + ++   ++  +  LV+DEAD +L +G+   +  + + IP+      + Q 
Sbjct  386  ATPGRLIDHIRNSPSFSIDSLEVLVIDEADRMLDEGFQAELTEILSLIPR-----HKRQT  440

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            ++ SAT+++  ++ L +  +  P  V              ++ P  PK+  +  +L +  
Sbjct  441  LLYSATMNT-KIQDLIQLSLQKPVRV--------------MIDP--PKSAAI--KLVQEF  481

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
            +R   +  +D+ +P      +  + IK         ++   + ++ ++F   K     L 
Sbjct  482  VR---IRKRDHLKPA-----LLFQLIK---------SVDPSQQNRIVVFVARKESAHKLR  524

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
                  G              LHG     +R  ++  FK   V  LICTD+AARG+DI  
Sbjct  525  IILGLLG---------MRVSELHGSLTQEQRLASVNDFKNLTVPVLICTDLAARGLDIPK  575

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV---ATEKEKVWYHVCSSRGKGCYN  640
            +  VIN  +P   + Y+HR+GR  RA R G +I+ V     ++  V   + S   +   N
Sbjct  576  IEIVINYDMPKTHEIYLHRVGRTARAGREGKSITFVGESTQDRAIVKDAIKSISEEQARN  635

Query  641  TRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQV  673
            ++  +     + + E++ L++I E     I +V
Sbjct  636  SKQGKAVSRNVDWKEVEELNKIVESKATVIEEV  668


 Score = 46.6 bits (109),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 22/69 (32%), Positives = 41/69 (59%), Gaps = 1/69 (1%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F  + +   + + + ++ +  P+ IQ+  IP+ L G D++  A TGSGKT A+ IP+I
Sbjct  258  TTFQSLQLSRPVLKGLSQLGYTKPSPIQSACIPIALLGKDIVAGAVTGSGKTAAYMIPII  317

Query  62   Q-IVYETLK  69
            + ++Y+  K
Sbjct  318  ERLLYKPAK  326


>sp|Q4P5U4|DBP4_USTMA ATP-dependent RNA helicase DBP4 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP4 PE=3 SV=2
Length=916

 Score = 103 bits (256),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 163/378 (43%), Gaps = 67/378 (18%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            AL++ P+RELA Q    +++   Y         L+IGG   + +   L   ++I++ TPG
Sbjct  133  ALVISPTRELAIQIFEVLRKIGSY---HTFSAGLVIGGKDVKQEKDRLSR-INILIATPG  188

Query  349  RL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            RL   +  T   + S V+ LVLDEAD +L  G+S  +N +   +P      +  Q ++ S
Sbjct  189  RLLQHMDQTLGFDTSNVQVLVLDEADRILDMGFSRTLNAIVENLP------RNRQTMLFS  242

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLK---GEDSVPDTV--HHVVVPVNPKTDRLWERLGKS  462
            AT  +  VK L+   +  P +V ++    E   P  +  H+++V +  K D L+     S
Sbjct  243  AT-QTKRVKDLARLSLQDPEYVAVREPENEGCTPRGLEQHYMLVELEKKLDLLF-----S  296

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
             IRT                                     H   +A++F  +      +
Sbjct  297  FIRT-------------------------------------HTKCKALVFMSSCRQVQFV  319

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
             + F +   G        S + LHG +K  +R Q   +F K     L  TD+AARG+D  
Sbjct  320  HETFCKLRPG-------VSLMALHGKQKQAKRLQIFTQFTKTQHALLFATDIAARGLDFP  372

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTR  642
             V +VI + +P++   Y+HR+GR  R    G ++  V   +EK      +++       +
Sbjct  373  AVDWVIQLDVPEDVDTYIHRVGRTARYTAKGNSLLFVLPSEEKGILEALATKNIAIGRIK  432

Query  643  LKEDGGCTIWYNEMQLLS  660
             KE    +I  N++Q  +
Sbjct  433  PKESKTQSIQ-NQLQAFA  449


 Score = 55.5 bits (132),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 41/62 (66%), Gaps = 0/62 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+++ +     + ++   +   TDIQA+S+ L L G DVL AA TGSGKT AF IPV++I
Sbjct  60   FTQLPLSDRTCRGLKRAGYTDMTDIQAKSLSLSLKGKDVLGAARTGSGKTLAFLIPVLEI  119

Query  64   VY  65
            +Y
Sbjct  120  LY  121


>sp|Q54ZI9|DDX20_DICDI Probable ATP-dependent RNA helicase ddx20 
OS=Dictyostelium discoideum OX=44689 GN=ddx20 PE=3 SV=2
Length=849

 Score = 102 bits (255),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 153/351 (44%), Gaps = 58/351 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE---------  337
            P  LI+ P+RE+A Q  + IK   KY    K    + IGG+ + +               
Sbjct  162  PLVLIIAPTREIAVQIKDVIKSISKYCKRIKCE--VFIGGLNSNNNKDENNNNILNNEDV  219

Query  338  ---NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV  394
               NG  I+VGTPG++  L+    L    ++ +++DEAD LL   +S  IN +++ I   
Sbjct  220  NRLNGTQIIVGTPGKIKSLIENLHLRTDTLKMVIMDEADKLLDASFSKTINWIYSAIGNG  279

Query  395  TSDGKR------LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
             S+         +Q++  SAT  S+ +  L +  M+    V+++     P          
Sbjct  280  NSNKNNSSSGSGIQMLAFSATYPSYLIN-LLKLYMNNENLVEIRLCSDTPS---------  329

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
                    E + + +    +   ++N +   N            K +  V  +++    Q
Sbjct  330  -------LEGIKQYYQIFRNDFTENNYKTFQN------------KCKSLVLVLEQVSFYQ  370

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
            AIIFC  KI  + L +   ++G         +    + G +   +R   +   K  ++R 
Sbjct  371  AIIFCNHKIRGEELTRQLNREG---------WPTAFIAGGQNQKDRLSTMSALKSFNIRI  421

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            L+ TD+ +RGID+  V  VIN+ LP + + Y HRIGR GR    G++I+ +
Sbjct  422  LVSTDLISRGIDVERVNLVINLDLPKDHETYFHRIGRTGRFGTYGVSITFI  472


 Score = 50.1 bits (118),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 52/89 (58%), Gaps = 3/89 (3%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             FSE+ +  E+ + +E+  +  P+ IQ ++IPL + G D++  A++G+GKT  F +  ++
Sbjct  56   TFSELLLQKEVLKGLEDGGYQRPSPIQLKAIPLGISGVDLIAQAKSGTGKTIVFGVIALE  115

Query  63   IVY---ETLKDQQEGKKGKTTIKTGASVL  88
             V    + L+ +QE  K + T +T   +L
Sbjct  116  CVLRESKLLRQKQELNKTQLTNQTNKQLL  144


>sp|Q6BPT8|DBP6_DEBHA ATP-dependent RNA helicase DBP6 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP6 PE=3 SV=2
Length=576

 Score = 101 bits (252),  Expect = 4e-21, Method: Compositional matrix adjust.
 Identities = 88/359 (25%), Positives = 161/359 (45%), Gaps = 60/359 (17%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGV-------  340
            +A+I+ P++ L  Q    + Q  K  +         +  V+ ++ LS+ E G+       
Sbjct  212  RAIILVPTKPLINQVKTTLNQLSKGTN---------LSIVSLKNDLSIKEEGIKLQTNEP  262

Query  341  DIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR  400
            DI+V TPGRL D ++ G ++L  +++LV+DEAD LL+Q + ++   + ++I + T+  +R
Sbjct  263  DIIVSTPGRLVDHLTNGYISLKNLQYLVIDEADRLLNQSFQNWCQILISKIDEFTNIKER  322

Query  401  ---------LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPK  451
                     +Q ++ SATL + D  KLS    H P  + +  ++ + + +  +   +N  
Sbjct  323  NISNSWKLNVQKMIFSATLTT-DAGKLSLLKFHKPRLIIVNNKEQLVNEMFSLPATLN--  379

Query  452  TDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAII  511
                         +     AK + +P   S  + S                ++K+   +I
Sbjct  380  -----------EFKLQFGSAKSSLKPLILSKFLLS----------------KNKLANVLI  412

Query  512  FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL--HGDRKPHERKQNLERFKKGDVRFL  569
            F ++    D   +         +K G +   +      +     R + L+ F K  +  L
Sbjct  413  FTKSN---DASLRLSRLLSLIMNKLGSETINIAYINSTNNTTSVRSKILKDFSKQTINIL  469

Query  570  ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            + TD+ ARGIDI  +  VIN  LP+  + YVHR+GR  RA + G A +    + E  W+
Sbjct  470  VATDLIARGIDILSITDVINYDLPNSSREYVHRVGRTARANQEGFAYNFCFGKGEAKWF  528


 Score = 36.6 bits (83),  Expect = 0.93, Method: Compositional matrix adjust.
 Identities = 15/23 (65%), Positives = 20/23 (87%), Gaps = 0/23 (0%)

Query  40   GDVLMAAETGSGKTGAFSIPVIQ  62
            GD+L+ A TGSGKT A+SIP+I+
Sbjct  179  GDLLVNASTGSGKTLAYSIPIIE  201


>sp|Q0UCB9|DBP5_PHANO ATP-dependent RNA helicase DBP5 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=DBP5 PE=3 SV=1
Length=471

 Score = 100 bits (250),  Expect = 4e-21, Method: Compositional matrix adjust.
 Identities = 89/345 (26%), Positives = 151/345 (44%), Gaps = 73/345 (21%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+A+ + PSRELA Q L  I    ++++   L+ +  I     R+Q         ++V
Sbjct  133  NEPQAIALAPSRELARQILGVITHMGQFMEG--LKTMAAIPDPTKRNQ----RLDAHVLV  186

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQV  403
            GTPG + + +    +    ++ LVLDEAD +L  QG  D   R+ + +P      K +Q 
Sbjct  187  GTPGTVQEQLKRRLIKSDSIKILVLDEADNMLDQQGMGDQCTRVKSLLP------KNIQT  240

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            ++ SAT     V   + K       + L  E+   + +  + + ++   D+         
Sbjct  241  VLFSATFPPA-VINYANKFAPNSNVLTLAHEELTIEGIKQLYIDIDKDQDK---------  290

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA--IIFCRTKIDCDN  521
                                 +S  +K     Y +       M QA  IIF RT+   + 
Sbjct  291  ---------------------YSTLLKF----YGL-------MTQASSIIFVRTRRTAEE  318

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            LE+  + +G              L G  +  +R + +++F+ G+ + LI T+V ARGID+
Sbjct  319  LERRMVAEG---------HKVAQLSGALEGQDRDRVIDQFRSGEAKVLITTNVLARGIDV  369

Query  582  HGVPYVINVTLPD-------EKQNYVHRIGRVGRAERMGLAISLV  619
              V  VIN  +P        + + Y+HRIGR GR  R+G+A++ V
Sbjct  370  ESVTMVINYDVPTMADGREADPETYLHRIGRTGRFGRVGVALTFV  414


 Score = 35.0 bits (79),  Expect = 2.9, Method: Compositional matrix adjust.
 Identities = 15/49 (31%), Positives = 33/49 (67%), Gaps = 2/49 (4%)

Query  15   QAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSIPVI  61
            + V  M++  P+ IQ +++PL+L     +++  +++G+GKT AFS+ ++
Sbjct  77   KGVRNMNFRKPSKIQEKALPLLLMNPPTNMIAQSQSGTGKTAAFSLNIL  125


>sp|Q5ZLN8|DDX55_CHICK ATP-dependent RNA helicase DDX55 OS=Gallus 
gallus OX=9031 GN=DDX55 PE=2 SV=1
Length=591

 Score = 101 bits (252),  Expect = 4e-21, Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 154/343 (45%), Gaps = 57/343 (17%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL-ENGVDIVVGTP  347
            A+I+ P+RELA Q    +  F K+   PK  ++L+IGG    + +    E+G +I+V TP
Sbjct  85   AIIITPTRELAIQIDEVLTHFTKHF--PKFSQILLIGGRNPMEDVEKFKEHGGNIIVATP  142

Query  348  GRLDDLVSTGK--LNLSQ----VRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL  401
            GRL+DL       L+L+     +  LVLDEAD LL  G+   +N +   +P+    G   
Sbjct  143  GRLEDLFRRKADGLDLASCVKSLDVLVLDEADRLLDMGFESSLNAILAFLPKQRRTG---  199

Query  402  QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK  461
               + SAT  + +V+ L    +  P  + +K E  V  T           T +   RL  
Sbjct  200  ---LFSAT-QTQEVENLVRAGLRNPVRISVK-EKGVAAT----------NTQKTPTRL--  242

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
                       +N      + E +++ +  L+         +HK ++ ++F  T   C  
Sbjct  243  -----------ENYYMICKADEKFNQLVHFLR---------QHKQEKHLVFFST---CAC  279

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            +E Y    G   +    Q   +C+HG  K H+R +    F++     L+CTDV ARGIDI
Sbjct  280  VEYY----GKALESLIKQVKIMCIHGKMK-HKRNKIFTEFRRLAGGILVCTDVMARGIDI  334

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
              V +V+    P     +VHR GR  R    G A+  +   +E
Sbjct  335  PEVHWVLQYDPPSSASAFVHRCGRTARIGNAGSALVFLLPMEE  377


 Score = 49.7 bits (117),  Expect = 9e-05, Method: Compositional matrix adjust.
 Identities = 26/71 (37%), Positives = 43/71 (61%), Gaps = 3/71 (4%)

Query  7   MGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVY-  65
           + + P + +A++++ +   T +Q+ +IPL +   DV   A TGSGKT AF IP+++I+  
Sbjct  14  VALSPGVLRALQDLGFDRMTPVQSATIPLFMSNKDVAAEAVTGSGKTLAFVIPILEILLR  73

Query  66  --ETLKDQQEG  74
             E LK  Q G
Sbjct  74  REEKLKKMQVG  84


>sp|P38719|DBP8_YEAST ATP-dependent RNA helicase DBP8 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP8 
PE=1 SV=1
Length=431

 Score = 100 bits (249),  Expect = 4e-21, Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 150/348 (43%), Gaps = 69/348 (20%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P+    +++ P+RELA Q     +QF     +  +R  +I+GG +   Q   L+     +
Sbjct  68   PSGMFGVVLTPTRELAMQI---AEQFTALGSSMNIRVSVIVGGESIVQQALDLQRKPHFI  124

Query  344  VGTPGRL-DDLVSTGKLN---LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
            + TPGRL   ++S+G      L + ++LVLDEAD LL+  ++D +    + +P      K
Sbjct  125  IATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALP---PKDK  181

Query  400  RLQVIVCSATLHSFDVKKLSEKIMH------FPTWVDLKGEDSVPDT--VHHVVVPVNPK  451
            R Q ++ +AT+    VK L    +       F   V+     ++P T  + +++VP + K
Sbjct  182  R-QTLLFTATITD-QVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLKIEYILVPEHVK  239

Query  452  TDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAII  511
               L++ L                                          +E++   AII
Sbjct  240  EAYLYQLL----------------------------------------TCEEYENKTAII  259

Query  512  FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLIC  571
            F    +  + L +           K  +     LH      ER  +L RF+    R LI 
Sbjct  260  FVNRTMTAEILRRTL---------KQLEVRVASLHSQMPQQERTNSLHRFRANAARILIA  310

Query  572  TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            TDVA+RG+DI  V  V+N  +P +   ++HR GR  RA R+G AIS V
Sbjct  311  TDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFV  358


 Score = 47.0 bits (110),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 25/61 (41%), Positives = 36/61 (59%), Gaps = 0/61 (0%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           MA F  +G+   + +++  M    PT IQ   IP IL G D +  A+TGSGKT AF+ P+
Sbjct  1   MADFKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPM  60

Query  61  I  61
           +
Sbjct  61  L  61


>sp|A6ZT77|DBP8_YEAS7 ATP-dependent RNA helicase DBP8 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DBP8 PE=3 SV=1
Length=431

 Score = 100 bits (249),  Expect = 4e-21, Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 150/348 (43%), Gaps = 69/348 (20%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P+    +++ P+RELA Q     +QF     +  +R  +I+GG +   Q   L+     +
Sbjct  68   PSGMFGVVLTPTRELAMQI---AEQFTALGSSMNIRVSVIVGGESIVQQALDLQRKPHFI  124

Query  344  VGTPGRL-DDLVSTGKLN---LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
            + TPGRL   ++S+G      L + ++LVLDEAD LL+  ++D +    + +P      K
Sbjct  125  IATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALP---PKDK  181

Query  400  RLQVIVCSATLHSFDVKKLSEKIMH------FPTWVDLKGEDSVPDT--VHHVVVPVNPK  451
            R Q ++ +AT+    VK L    +       F   V+     ++P T  + +++VP + K
Sbjct  182  R-QTLLFTATITD-QVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLKIEYILVPEHVK  239

Query  452  TDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAII  511
               L++ L                                          +E++   AII
Sbjct  240  EAYLYQLL----------------------------------------TCEEYENKTAII  259

Query  512  FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLIC  571
            F    +  + L +           K  +     LH      ER  +L RF+    R LI 
Sbjct  260  FVNRTMTAEILRRTL---------KQLEVRVASLHSQMPQQERTNSLHRFRANAARILIA  310

Query  572  TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            TDVA+RG+DI  V  V+N  +P +   ++HR GR  RA R+G AIS V
Sbjct  311  TDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFV  358


 Score = 47.0 bits (110),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 25/61 (41%), Positives = 36/61 (59%), Gaps = 0/61 (0%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           MA F  +G+   + +++  M    PT IQ   IP IL G D +  A+TGSGKT AF+ P+
Sbjct  1   MADFKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPM  60

Query  61  I  61
           +
Sbjct  61  L  61


>sp|Q5BCI0|MAK5_EMENI ATP-dependent RNA helicase mak5 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=mak5 PE=3 SV=1
Length=770

 Score = 102 bits (253),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 97/363 (27%), Positives = 154/363 (42%), Gaps = 56/363 (15%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P ALI+ P+RELA Q   +I            R  L+ GG++ + Q  +LE   DIV+GT
Sbjct  278  PIALILSPTRELAHQLQKHIYGLISNAPGVNARTALLTGGLSVQKQQRLLETA-DIVIGT  336

Query  347  PGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK----  399
            PGR+ +++ TG+     +  ++FLV+DEAD LLS+G+   +  + + + +V   G     
Sbjct  337  PGRVWEVLRTGQGLIRRMQGIKFLVIDEADRLLSEGHFKEVEDILSSLDRVEDGGPPDEE  396

Query  400  ------------RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
                          Q +V SAT H    + L +K+     W    G D            
Sbjct  397  DDSSEENVVPGVERQTLVFSATFH----RDLQQKLAGKGKWT---GGD------------  437

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAI----KILKGEYAVRAIKE  503
            +  K + +   L K + R +     D   P +   E   E I     + K  Y    +  
Sbjct  438  IMNKKESMEYLLQKLNFREEKPKFID-VNPVSQMAEGLKEGIVECPAMEKDLYLYTLLLY  496

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
            H   + ++F  +      + Q           +  Q   + LH       R +++ERF  
Sbjct  497  HPKHRTLVFTNSISAVRRITQLL---------QTLQLPALALHSSMAQKARLRSVERFSS  547

Query  564  GDVR---FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
                    L+ TDVAARG+DI G+ +VI+   P     YVHR GR  RA   G ++ + +
Sbjct  548  STANPGTILVATDVAARGLDIKGIDFVIHYHAPRTADTYVHRSGRTARAGASGKSVIICS  607

Query  621  TEK  623
             E+
Sbjct  608  PEE  610


 Score = 53.5 bits (127),  Expect = 6e-06, Method: Compositional matrix adjust.
 Identities = 24/62 (39%), Positives = 40/62 (65%), Gaps = 0/62 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++A+  +G+ PE   ++ ++ +  PT +Q   IP IL G DV+  A TGSGKT AF +P+
Sbjct  196  ISAWEPLGLSPETLTSLSKLKFSTPTSVQKSCIPPILDGHDVIGKASTGSGKTLAFGLPI  255

Query  61   IQ  62
            ++
Sbjct  256  LE  257


>sp|A5DLE0|DBP8_PICGU ATP-dependent RNA helicase DBP8 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP8 PE=3 
SV=2
Length=433

 Score = 100 bits (248),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 87/337 (26%), Positives = 148/337 (44%), Gaps = 57/337 (17%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR  349
            L++ P+RELA Q     +QF     +  ++  +++GG     Q   ++     ++ TPGR
Sbjct  73   LVLTPTRELALQIA---EQFLALGASMNIKVAVVVGGEDMVKQALEIQKSPHFIIATPGR  129

Query  350  LDD-LVSTGKLN---LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            L D ++++G      L +++FLVLDEAD LLS  +   + R    +P    D  + Q ++
Sbjct  130  LADHILNSGDDTVGGLKRIKFLVLDEADRLLSNSFGSDLERCFKILP----DASKRQTLL  185

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             +AT+    V+ L +K               VP+                    GK  + 
Sbjct  186  FTATVTDA-VRALKDK--------------PVPE--------------------GKKPVF  210

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA--IIFCRTKIDCDNLE  523
              ++ +KD     A     +      +K  Y    +   K ++A  I+F       + L 
Sbjct  211  IHEIVSKDQVAIPATLTISYVFVPSYVKEAYLHNILVSPKYEKASAIVFVNRTYTAEILR  270

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
            +           +        LH +    ER  +L RF+ G  R LI TDVA+RG+DI  
Sbjct  271  RTL---------RKLDIRVASLHSEMPQSERTNSLHRFRAGAARVLIATDVASRGLDIPN  321

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            V  V+N  +P +  +Y+HR+GR  RA + G ++S+V+
Sbjct  322  VELVVNQDIPADPDDYIHRVGRTARAGKKGGSVSIVS  358


 Score = 53.1 bits (126),  Expect = 6e-06, Method: Compositional matrix adjust.
 Identities = 27/59 (46%), Positives = 38/59 (64%), Gaps = 0/59 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
           +F ++GV   + +A+  M    PT IQAE IP IL G D +  A+TGSGKT AF+ P++
Sbjct  2   SFKDLGVSKWLLEALAAMKIRSPTSIQAECIPQILAGRDCIGGAKTGSGKTIAFAAPMM  60


>sp|A7TJT7|SUB22_VANPO ATP-dependent RNA helicase SUB2-2 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 
21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=SUB2-2 PE=3 SV=1
Length=442

 Score = 100 bits (248),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 155/354 (44%), Gaps = 70/354 (20%)

Query  283  LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN---G  339
            +P     +++  +RELA Q  N   +F KY+  P ++  +  GG        +L+N    
Sbjct  123  VPGEVSVVVICNARELAYQIRNEYLRFSKYM--PDVKTAVFYGGTPITKDAELLKNKETA  180

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
              IVV TPGRL  LV    ++LS V+  V+DE D +L +     + R    I + T   K
Sbjct  181  PHIVVATPGRLKALVRDKLIDLSHVKNFVIDECDKVLEELD---MRRDVQDIFRATPRDK  237

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-----HVVVPVNPKTDR  454
              QV++ SATL S +++ +  + +  P  +++  +D    T+H     ++ +  N K  +
Sbjct  238  --QVMMFSATL-SEEIRPICRRFLQNP--LEIFVDDEAKLTLHGLQQYYIKLQENEKNRK  292

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
            L + L       DD+                                   + +Q IIF +
Sbjct  293  LAQLL-------DDL-----------------------------------EFNQVIIFVK  310

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
            +    + L +   +           F  + +HG+ K  ER    + FK+ + R  + TDV
Sbjct  311  STKRANELTKLLNESN---------FPAITVHGNMKQAERIARYKAFKEFEKRICVSTDV  361

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT-EKEKVW  627
              RGIDI  +   IN  L  E   Y+HR+GR GR    GLAIS V++ E E+V 
Sbjct  362  FGRGIDIERINLAINYDLTTEADQYLHRVGRAGRFGTKGLAISFVSSPEDEEVL  415


 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 20/59 (34%), Positives = 36/59 (61%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +  + PE+A+A+ +  +  P+++Q  +IP  + G DVL  A++G GKT  F +  +Q
Sbjct  60   FKDFLLKPELARAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQ  118


>sp|Q84TG1|RH57_ARATH DEAD-box ATP-dependent RNA helicase 57 OS=Arabidopsis 
thaliana OX=3702 GN=RH57 PE=2 SV=1
Length=541

 Score = 101 bits (251),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 145/334 (43%), Gaps = 65/334 (19%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +A+I+ P+RELA QT    ++ KK I        L+   +      S L    D+++ TP
Sbjct  212  RAVILSPARELAAQT---AREGKKLIKGSNFHIRLMTKPLVKTADFSKL--WCDVLISTP  266

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI--V  405
             RL   +   K++LS+V +LVLDE+D L  Q        +  QI  V        +I  +
Sbjct  267  MRLKRAIKAKKIDLSKVEYLVLDESDKLFEQS-------LLKQIDCVVKACSNPSIIRSL  319

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SATL    V++L+  IMH              D V  ++   N  ++ + ++L      
Sbjct  320  FSATLPD-SVEELARSIMH--------------DAVRVIIGRKNTASETVKQKL------  358

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVR-AIKEHKMDQAIIFCRTKIDCDNLEQ  524
               V A              SE  K+L    A+R +  E      +IF ++K     L  
Sbjct  359  ---VFA-------------GSEEGKLL----ALRQSFAESLNPPVLIFVQSKERAKELYD  398

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
                       K        +H D  P ER+  +++F+ G+   LI TDV ARG+D  G+
Sbjct  399  EL---------KCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIATDVIARGMDFKGI  449

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
              VIN   PD    Y+HRIGR GRA R G AI+ 
Sbjct  450  NCVINYDFPDSASAYIHRIGRSGRAGRSGEAITF  483


 Score = 43.5 bits (101),  Expect = 0.008, Method: Compositional matrix adjust.
 Identities = 22/57 (39%), Positives = 33/57 (58%), Gaps = 0/57 (0%)

Query  5    SEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            S  G    I + + E+ +  PT IQ ++IP++L G +    A TGSGKT AF  P++
Sbjct  144  SRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPML  200


>sp|Q54TF8|DDX19_DICDI ATP-dependent RNA helicase ddx19 OS=Dictyostelium 
discoideum OX=44689 GN=helC PE=2 SV=1
Length=465

 Score = 100 bits (249),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 99/347 (29%), Positives = 163/347 (47%), Gaps = 78/347 (22%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            NAP+A+ + P++ELA QT   I +  ++ +   ++ LL I  +     ++       +++
Sbjct  138  NAPQAICISPTKELALQTFEVISKIGQFSN---IKPLLYISEIEVPKNVTN-----QVII  189

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL--Q  402
            GTPG++ + V   +L++  ++ +VLDEAD         FI +M N   Q+    + L   
Sbjct  190  GTPGKILENVIKKQLSVKFLKMVVLDEAD---------FIVKMKNVPNQIAMINRLLPSN  240

Query  403  VIVC--SATLHSFDVKKLSEKIMHFP-TWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
            V VC  SAT  S  V++L +KI+  P T + LK ++   + +H   +             
Sbjct  241  VKVCLFSATF-SMGVEELIKKIVQDPYTSIRLKRQELSVEKIHQYFI-------------  286

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
                    D  ++DN            +A+ IL   Y   ++      Q+I+F  T    
Sbjct  287  --------DCGSEDN------------KAL-ILSDIYGFISV-----GQSIVFVHTIATA  320

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHG-DRKPHERKQNLERFKKGDVRFLICTDVAARG  578
             ++ Q  + +G          S   L+G D    ER + ++ FK G  + LI T+V ARG
Sbjct  321  KSVHQKMVDEG---------HSVSLLYGKDLTTEERFKQIKDFKDGKSKVLITTNVLARG  371

Query  579  IDIHGVPYVINVTLPDEKQ------NYVHRIGRVGRAERMGLAISLV  619
            IDI  V  VIN  +P ++       +Y+HRIGRVGR  R G+A+S V
Sbjct  372  IDIPQVSLVINYDVPLDEMGKPDPVHYLHRIGRVGRFGRSGVALSFV  418


 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 42/65 (65%), Gaps = 1/65 (2%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMA-AETGSGKTGAFSIP  59
            +  F E+G+ PE+ + V  M +  P+ IQ  ++P+I+   + L+A +++G+GKT AF++ 
Sbjct  69   VKTFEELGLKPELLKGVYAMGYNKPSKIQEAALPIIIQSPNNLIAQSQSGTGKTAAFTLG  128

Query  60   VIQIV  64
            ++  V
Sbjct  129  MLNCV  133


>sp|Q6CSZ7|DHH1_KLULA ATP-dependent RNA helicase DHH1 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DHH1 PE=3 SV=1
Length=514

 Score = 100 bits (249),  Expect = 6e-21, Method: Compositional matrix adjust.
 Identities = 94/339 (28%), Positives = 142/339 (42%), Gaps = 68/339 (20%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N  +ALI+ P+RELA QT   ++   K+     +  ++  GG   RD +  L   V I+V
Sbjct  103  NKIQALIMVPTRELALQTSQVVRTLGKHCG---ISCMVTTGGTNLRDDIMRLNEPVHILV  159

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GTPGR+        L+L+  R   L E    +       ++R                  
Sbjct  160  GTPGRV--------LDLASRRVTDLSECHLFIMDEADKMLSR------------------  193

Query  405  VCSATLHSFDVKKLSEKIMHF-PTWVDLK-GEDSVPDTVHHVVVP--VNPKTDRLWERLG  460
                     D K L+E+I+ F P    L     + P TV   +V    NP    L + L 
Sbjct  194  ---------DFKVLAEQILGFLPERRQLLLFSATFPVTVKEFMVKHLKNPHEINLMDELT  244

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
               I       ++  +            +  L   ++     + +++QAIIFC +    +
Sbjct  245  LKGISQFYAFVEEKQK------------LHCLNTLFS-----KLQINQAIIFCNSTNRVE  287

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             L +   + G         FSC   H   K  ER +    F++G VR L+C+D+  RGID
Sbjct  288  LLAKKITELG---------FSCYYSHARMKQSERNKVFHEFRQGKVRTLVCSDLLTRGID  338

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            I  V  VIN   P   + Y+HRIGR GR   +GLAI+L+
Sbjct  339  IQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLI  377


 Score = 47.8 bits (112),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 39/70 (56%), Gaps = 0/70 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F +  +  E+   + E  +  P+ IQ E+IP+ + G D+L  A+ G+GKT AF IP ++
Sbjct  37   SFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAIAGKDILARAKNGTGKTAAFVIPTLE  96

Query  63   IVYETLKDQQ  72
             V   L   Q
Sbjct  97   KVKPKLNKIQ  106


>sp|A2QS00|DBP4_ASPNC ATP-dependent RNA helicase dbp4 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=dbp4 PE=3 SV=1
Length=802

 Score = 101 bits (252),  Expect = 7e-21, Method: Compositional matrix adjust.
 Identities = 95/342 (28%), Positives = 147/342 (43%), Gaps = 65/342 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            AL++ P+RELA Q    +++  +Y         L+IGG + R++   L   ++I+V TPG
Sbjct  122  ALVLSPTRELAIQIFEVLRKVGRY---HTFSAGLVIGGKSLREEQERL-GRMNILVCTPG  177

Query  349  R-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            R L  L  T       ++ LVLDEAD +L  G+   ++ +   +P      K  Q ++ S
Sbjct  178  RMLQHLDQTSFFETHNLQMLVLDEADRILDMGFQKTVDAIIGHLP------KERQTLLFS  231

Query  408  ATLHSFDVKKLSEKIMHFPTWVDL--KGEDSVPDTV--HHVVVPVNPKTDRLWERLGKSH  463
            AT  +  V  L+   +  P +V +      + P  +  H+VV P+  K D LW     S 
Sbjct  232  AT-QTKKVSDLARLSLQDPEYVAVHEAASSATPSKLQQHYVVTPLPQKLDVLW-----SF  285

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
            IR++                + S+ I  L     VR +                     E
Sbjct  286  IRSN----------------LKSKTIVFLSSGKQVRFV--------------------YE  309

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +   Q G P         + LHG +K   R     +F       L  TDVAARG+D   
Sbjct  310  SFRHMQPGVP--------LMHLHGRQKQGGRLDITTKFSSAQHAVLFATDVAARGLDFPA  361

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            V +VI +  P++   Y+HR+GR  R ER G A+  +   +EK
Sbjct  362  VDWVIQLDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEEK  403


 Score = 47.4 bits (111),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 24/62 (39%), Positives = 38/62 (61%), Gaps = 0/62 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+++ +    A  +    +   TDIQ+ +I   L G D+L AA+TGSGKT AF IP+++ 
Sbjct  49   FTDLPLSEPTASGLASSHYKTLTDIQSRAISHALKGRDILGAAKTGSGKTLAFLIPILEN  108

Query  64   VY  65
            +Y
Sbjct  109  LY  110


>sp|Q1EB31|DBP4_COCIM ATP-dependent RNA helicase DBP4 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DBP4 PE=3 SV=1
Length=806

 Score = 101 bits (252),  Expect = 8e-21, Method: Compositional matrix adjust.
 Identities = 91/342 (27%), Positives = 150/342 (44%), Gaps = 65/342 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            ALI+ P+RELA Q    +++  +Y         L+IGG + +++   L   ++I+V TPG
Sbjct  123  ALILSPTRELAIQIFEVLRKIGRY---HTFSAGLVIGGKSLQEEQERL-GRMNILVCTPG  178

Query  349  R-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            R L  +  T   + + ++ LVLDEAD ++  G+   ++ +   +P      K  Q ++ S
Sbjct  179  RMLQHMDQTAAFDTAHIQMLVLDEADRIMDMGFQSTVDAIVEHLP------KERQTMLFS  232

Query  408  ATLHSFDVKKLSEKIMHFPTWVDL--KGEDSVPDTV--HHVVVPVNPKTDRLWERLGKSH  463
            AT  +  V  L+   +  P ++ +      + P ++  H+VV P+  K D LW     S 
Sbjct  233  AT-QTKKVSDLARLSLRDPEYISVHEAASSATPASLQQHYVVTPLPEKLDTLW-----SF  286

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
            IR        NT        + S+ +        VR +                     E
Sbjct  287  IR--------NT--------LKSKILVFFSSSKQVRFV--------------------YE  310

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +   Q G P         + LHG +K   R     +F +     L  TDVAARG+D   
Sbjct  311  AFRHMQPGIP--------LLHLHGRQKQSARIDITSKFSRAKYSCLFSTDVAARGLDFPA  362

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            V +VI +  P++   Y+HR+GR  R ER G A+  +   +E+
Sbjct  363  VDWVIQLDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEEE  404


 Score = 51.6 bits (122),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 25/63 (40%), Positives = 40/63 (63%), Gaps = 0/63 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +FSE+ +     Q +    +   TDIQ+ ++P  + G D+L AA+TGSGKT AF +PV++
Sbjct  49   SFSELPLSDATLQGLSASHFKTLTDIQSRAVPHAIKGRDILGAAKTGSGKTLAFLVPVLE  108

Query  63   IVY  65
             +Y
Sbjct  109  NLY  111


>sp|Q00PI9|HNRL2_MOUSE Heterogeneous nuclear ribonucleoprotein 
U-like protein 2 OS=Mus musculus OX=10090 GN=Hnrnpul2 PE=1 
SV=2
Length=745

 Score = 101 bits (251),  Expect = 8e-21, Method: Compositional matrix adjust.
 Identities = 54/139 (39%), Positives = 79/139 (57%), Gaps = 13/139 (9%)

Query  119  WHGCRATKGLMKGKHYYEVS----------CHDQGLCRVGWSTMQASLDLGTDKFGFGFG  168
            W G R+T G+ KGK  +E            C +  L RVGWS   +   LG D+F +GF 
Sbjct  276  WSGARSTYGVTKGKVCFEAKVTQNLPMKEGCTEVSLLRVGWSVDFSCSQLGEDEFSYGFD  335

Query  169  GTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVK--FSKNGKDLGLAFEIPPH-MKNQ  225
            G G K+ N QF+ +G+ F  +D IGC+ + +   V+  FSKNG+DLG+AF I    + ++
Sbjct  336  GRGLKAENGQFEEFGQTFGENDVIGCFANFETEEVELSFSKNGEDLGVAFRISKESLADR  395

Query  226  ALFPACVLKNAELKFNFGE  244
            AL P  + KN  ++ NFG+
Sbjct  396  ALLPHVLCKNCVVELNFGQ  414


>sp|Q0UMB9|DBP4_PHANO ATP-dependent RNA helicase DBP4 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=DBP4 PE=3 SV=1
Length=803

 Score = 101 bits (251),  Expect = 9e-21, Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 147/342 (43%), Gaps = 64/342 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            ALI+ P+RELA Q  + + +  K+         L+IGG +   +   L   ++I+V TPG
Sbjct  125  ALILSPTRELAIQIFDVLCKIGKH--GHMFAAGLLIGGKSLESERQALPR-MNILVATPG  181

Query  349  R-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            R L  L  T    +  ++ LVLDEAD +L  G+   ++ + + +P      K  Q ++ S
Sbjct  182  RMLQHLSQTAAFLVDDLKMLVLDEADRILDMGFQRDVDAIIDYLP------KERQTLLFS  235

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGED--SVPDTV--HHVVVPVNPKTDRLWERLGKSH  463
            AT  S  V  L+   +  P +V +  ED  + P ++  ++++ P+  K D LW     S 
Sbjct  236  AT-QSKKVSDLARLSLQDPEYVSVHAEDKSATPKSLQQNYIICPLEEKLDTLW-----SF  289

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
            I+                    S+  KIL                 + F   K      E
Sbjct  290  IQA-------------------SKKSKIL-----------------VFFSSAKAVRFVYE  313

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +   Q G P         + +HG +K   R     +F       L  TDVAARG+D   
Sbjct  314  SFRHMQPGIP--------LLHIHGRQKQGARLDTTAKFSSAKNSCLFATDVAARGLDFPA  365

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            V +VI V  PD+   Y+HR+GR  R  R G  +  +A  +E+
Sbjct  366  VDFVIQVDCPDDVDTYIHRVGRTARYNREGRGVLFLAPSEEE  407


 Score = 53.5 bits (127),  Expect = 7e-06, Method: Compositional matrix adjust.
 Identities = 26/62 (42%), Positives = 42/62 (68%), Gaps = 0/62 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS++ +     Q ++   + + TDIQ +++PL L G D+L AA+TGSGKT +F IPV++ 
Sbjct  51   FSDLPLSDPTKQGLKACHFAVMTDIQRKAVPLALKGHDILGAAKTGSGKTLSFIIPVLEN  110

Query  64   VY  65
            +Y
Sbjct  111  LY  112


>sp|Q2UHB7|DBP4_ASPOR ATP-dependent RNA helicase dbp4 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp4 
PE=3 SV=1
Length=796

 Score = 101 bits (251),  Expect = 9e-21, Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 150/341 (44%), Gaps = 65/341 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            ALI+ P+RELA Q    +++  +Y         LIIGG + +++   L   ++I+V TPG
Sbjct  120  ALILSPTRELAIQIFEVLRKIGRY---HTFSAGLIIGGKSLKEEQERL-GRMNILVCTPG  175

Query  349  R-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            R L  L  T   ++  ++ LVLDEAD +L  G+   ++ +   +P      K  Q ++ S
Sbjct  176  RMLQHLDQTAMFDVFNLQMLVLDEADRILDMGFQKTVDAIVGHLP------KERQTLLFS  229

Query  408  ATLHSFDVKKLSEKIMHFPTWVDL--KGEDSVPDTV--HHVVVPVNPKTDRLWERLGKSH  463
            AT  +  V  L+   +  P +V +      + P T+  H+VV P++ K D LW     S 
Sbjct  230  AT-QTKKVSDLARLSLQDPEYVAVHETASSATPSTLQQHYVVTPLSQKLDVLW-----SF  283

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
            IR++                + ++ I  L     VR +                     E
Sbjct  284  IRSN----------------LKAKTIVFLSSGKQVRFV--------------------YE  307

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +   Q G P         + LHG +K   R     +F +     L  TD+ ARG+D   
Sbjct  308  SFRHLQPGIP--------LMHLHGRQKQGGRLDITAKFSQAKHAVLFSTDITARGLDFPA  359

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            V +VI +  P++   Y+HR+GR  R ER G A+  +   +E
Sbjct  360  VDWVIQMDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEE  400


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 39/63 (62%), Gaps = 0/63 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +FS++ +    A  +    +   TDIQ+ +I   L G D+L AA+TGSGKT AF IPV++
Sbjct  46   SFSDLPLSEPTASGLASSHFKTLTDIQSRAIGHALKGRDILGAAKTGSGKTLAFLIPVLE  105

Query  63   IVY  65
             +Y
Sbjct  106  NLY  108


>sp|Q09747|DBP5_SCHPO ATP-dependent RNA helicase dbp5 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp5 
PE=1 SV=1
Length=503

 Score = 100 bits (248),  Expect = 9e-21, Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 154/359 (43%), Gaps = 99/359 (28%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV-LENGVDIVVG  345
            P+A+ + PSRELA Q ++ + +  KY +        +      +D +    +    IV+G
Sbjct  185  PQAICLAPSRELARQIMDVVTEMGKYTE--------VKTAFGIKDSVPKGAKIDAQIVIG  236

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            TPG + DL+   +L+   ++  VLDEAD +L  QG  D   R+ + +P+ T      Q++
Sbjct  237  TPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNT------QIV  290

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT         SE++                              ++  ER      
Sbjct  291  LFSATF--------SERV------------------------------EKYAERFA----  308

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKI--LKGEYAVRAIKEHKMD------------QAI  510
                        P AN   + +E + +  +K  Y     +EHK +            Q+I
Sbjct  309  ------------PNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSI  356

Query  511  IFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLI  570
            IFC+ K   + + +     G          +  CL G+ +  +R   ++ F+ G  + L+
Sbjct  357  IFCKKKDTAEEIARRMTADG---------HTVACLTGNLEGAQRDAIMDSFRVGTSKVLV  407

Query  571  CTDVAARGIDIHGVPYVINVTLPDEK------QNYVHRIGRVGRAERMGLAISLVATEK  623
             T+V ARGID+  V  V+N  +P ++      Q Y+HRIGR GR  R+G++I+ V  +K
Sbjct  408  TTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKK  466


>sp|Q0DBS1|RH51_ORYSJ Putative DEAD-box ATP-dependent RNA helicase 
51 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0535100 
PE=3 SV=2
Length=590

 Score = 100 bits (249),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 90/366 (25%), Positives = 162/366 (44%), Gaps = 68/366 (19%)

Query  277  VTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
            + + +F P N    +++ P+RELA QT N  K+  +Y          +IGG+  R +   
Sbjct  148  LCRLRFSPRNGTGVIVLCPTRELAIQTHNVAKELMRYHSQTLG---YVIGGIDLRGEAEQ  204

Query  336  LENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV  394
            L  G++++V TPGR LD +  T       ++ L++DEAD +L Q + + + ++   +P+ 
Sbjct  205  LAKGINVLVATPGRLLDHMQKTKSFKYECLKCLIIDEADRILEQNFEEQMKQIFKLLPR-  263

Query  395  TSDGKRLQVIVCSATLHSFDVKKLS----EKIMHFPTWVDLKGEDSVPDTVH-----HVV  445
               G++  +   + T    D  KL+    E+      +V +   +S   TV      + V
Sbjct  264  --QGRQTVLFSATQTEKVEDFAKLTFGSKEERQRTLVYVGVDDHES-KATVEGLKQGYCV  320

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
            +P   +   L+  L K+                       SE  K++    +  ++K H 
Sbjct  321  IPSERRFLVLYAFLKKA----------------------LSEKTKVMVFFSSCNSVKFH-  357

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
               A +    +I+C +                       +HG  K H+R     +F K +
Sbjct  358  ---AQLLNFIQIECYD-----------------------IHGQLKQHQRTSTFFKFHKAE  391

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER-MGLAISLVATEKE  624
               L+CT+VAARG+DI  V Y++    PDE ++Y+HR+GR  R +   G AI  +  ++ 
Sbjct  392  HGILLCTNVAARGLDIPDVDYIVQYDPPDETKDYIHRVGRTARGDNGKGSAILFLLPKEL  451

Query  625  KVWYHV  630
            ++  H+
Sbjct  452  QLLIHL  457


 Score = 59.7 bits (143),  Expect = 7e-08, Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 43/61 (70%), Gaps = 0/61 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS++ +    A A+ +M++   T+IQA SIP ++ G DV+ +A+TGSGKT AF IP I++
Sbjct  88   FSDLPISDLTANAIRDMNYTHLTEIQARSIPPLMLGSDVMASAKTGSGKTLAFLIPAIEL  147

Query  64   V  64
            +
Sbjct  148  L  148


>sp|Q55BR9|DDX49_DICDI Probable ATP-dependent RNA helicase ddx49 
OS=Dictyostelium discoideum OX=44689 GN=ddx49 PE=3 SV=1
Length=508

 Score = 99.8 bits (247),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 149/333 (45%), Gaps = 58/333 (17%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            A+I+ P+RELA Q     +QF        +   ++IGG+    Q  +L+    I+V TPG
Sbjct  75   AVILTPTRELAVQIG---EQFNAIGAPMNVNCSVVIGGIDNVTQALILDKRPHIIVATPG  131

Query  349  RLDDLVSTG-KLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            RL   ++ G K+ L   +FLVLDEAD LL + +   I  +   +P      ++ Q ++ S
Sbjct  132  RLASHLNNGLKIALKFCKFLVLDEADRLLGEDFELEIASILEHLPP----PEKRQTLLFS  187

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+   ++ KL    ++ P   +   ++S  DTV               + L + +I   
Sbjct  188  ATMTK-NLTKLDSIALNKPFIFE---DNSKYDTV---------------DTLKQEYIYM-  227

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                     P               K  Y V  +K+H+   AI+F     +C     Y +
Sbjct  228  ---------PAPT------------KDCYLVYILKKHEGSSAIVFVN---NC-----YAV  258

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
            +   G   K      V LH       R   L+ FK G V+ L+ TDVA+RG+DI  V  V
Sbjct  259  EAVKGMLNK-LDIPSVSLHSFLDQKSRLAALKTFKSGKVKVLVATDVASRGLDIPDVQIV  317

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            IN  L +  ++Y+HR+GR  R  R G AIS + 
Sbjct  318  INYKLSNSSKDYIHRVGRTARFGRSGRAISFIT  350


 Score = 56.2 bits (134),  Expect = 7e-07, Method: Compositional matrix adjust.
 Identities = 24/64 (38%), Positives = 43/64 (67%), Gaps = 0/64 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F E+G+   +    +++ +  P++IQA +IP IL G D++ +A+TGSGKT +F+IP++ 
Sbjct  5   TFEELGLTTWLVANCKQLGFKAPSNIQANTIPEILKGRDIIASAKTGSGKTASFAIPILN  64

Query  63  IVYE  66
            + E
Sbjct  65  QLSE  68


>sp|Q7RYZ7|DBP8_NEUCR ATP-dependent RNA helicase dbp-8 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=dbp-8 PE=3 SV=1
Length=626

 Score = 100 bits (249),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 103/397 (26%), Positives = 164/397 (41%), Gaps = 63/397 (16%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPK-LRELLIIGGVAARDQLSVLENGVDI  342
            P+A   +I+ P+RELA Q +  +    +    P  L+ +LI GG   R Q   L     +
Sbjct  261  PSAIFGVILTPTRELALQIMEQVIALSQ----PHVLKAVLITGGADMRKQAIDLAKRPHL  316

Query  343  VVGTPGRLDDLVSTGKLN----LSQVRFLVLDEADGLLSQ-GYSDFINRMHNQIPQVTSD  397
            V+ TPGRL D + T   +    L +V+F+VLDEAD LL+  G+   +  +      +   
Sbjct  317  VIATPGRLADHIRTSGEDTICGLRRVKFIVLDEADRLLANSGHGSMLPDVEECFSVLPPP  376

Query  398  GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWE  457
             +R Q ++ +AT+ + +VK LSE+               +P      V  V+ +   +  
Sbjct  377  SER-QTLLFTATM-TPEVKALSER-------------PPIPGRAPVFVCEVDTQRLAIPA  421

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
             L + H++    H +        +P+   +++                    IIFC    
Sbjct  422  TLRQMHLQVPVTHREHYLHMFLLTPQNVDKSV--------------------IIFCNRTS  461

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
              D L             +        LH      +R  NL RF+    R L+ TDVAAR
Sbjct  462  TADFLHHL---------LRLLDHRVTSLHSKLPQSQRIDNLGRFRASAARILVATDVAAR  512

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
            G+DI  V  VIN  +P +  +Y+HR+GR  RA R G A++ V      +   +    G+ 
Sbjct  513  GLDIPEVKIVINYDIPRDPDDYIHRVGRTARAGRKGDAVTFVGQRDVDLVLAIEQRVGRQ  572

Query  638  C---------YNTRLKEDGGCTIWYNEMQLLSEIEEH  665
                        TR+  D    +   + + L EIEE 
Sbjct  573  MEAWTEEGVNLETRVIRDALKVVGEKKREALLEIEEQ  609


 Score = 49.3 bits (116),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  + V P + Q++  M    PT IQ   IP IL G D +  + TGSGKT AF++P++Q
Sbjct  197  FDALNVRPWLVQSLANMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPILQ  255


>sp|Q07886|DDX49_DROME Probable ATP-dependent RNA helicase Dbp45A 
OS=Drosophila melanogaster OX=7227 GN=Dbp45A PE=2 SV=2
Length=521

 Score = 99.8 bits (247),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 146/333 (44%), Gaps = 59/333 (18%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            AL++ P+ ELA Q     +QF        +R  ++ GG     +   L     IVV  PG
Sbjct  78   ALVLTPTHELAYQI---SEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHIVVAMPG  134

Query  349  RL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            RL D L      +   +++LV+DEAD +L+  + + ++ +   +P      K  Q +  S
Sbjct  135  RLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLSIIERCLP------KTRQNLFFS  188

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLK--GEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
            AT+  F +K+ S     FP   D     +DS   TV               E L + ++ 
Sbjct  189  ATMKDF-IKESS----IFPIASDCFEWSQDSDVATV---------------ETLDQRYLL  228

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
              D           +   +  EA++  +        +E++    +IF  TK  C  L   
Sbjct  229  CADY----------DRDMVLIEALRKYR--------EENENANVMIFTNTKKYCQLLSMT  270

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
                      K  +   VCLHG  +  ER   L RFK   +R LI TDVAARG+DI  V 
Sbjct  271  L---------KNMEIDNVCLHGFMRQKERVAALSRFKSNQIRTLIATDVAARGLDIPSVE  321

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
             V+N  LP   + Y+HR+GR  RA R G++IS+
Sbjct  322  LVMNHMLPRTPKEYIHRVGRTARAGRKGMSISI  354


 Score = 49.3 bits (116),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 0/63 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F  +G+ P + + + ++     T IQ + IP IL G D + AA+TGSGKT AF++P+++ 
Sbjct  9   FQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILER  68

Query  64  VYE  66
           + E
Sbjct  69  LSE  71


>sp|Q9ESV0|DDX24_MOUSE ATP-dependent RNA helicase DDX24 OS=Mus 
musculus OX=10090 GN=Ddx24 PE=1 SV=2
Length=857

 Score = 100 bits (250),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 98/366 (27%), Positives = 158/366 (43%), Gaps = 66/366 (18%)

Query  276  QVTQTKFLPNAPK-ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLS  334
            Q+   K  P  P   L++ P+RELA Q   +I    K+     +   +++GG++ + Q  
Sbjct  376  QIAIYKVHPRRPLLGLVLTPTRELAIQVRQHIDAVAKFTG---INTAILVGGMSTQKQQR  432

Query  335  VLENGVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQI  391
            +L    +IV+ TPGRL +LV        NL Q+R LV+DEAD ++ +G+   ++++   +
Sbjct  433  MLNRHPEIVIATPGRLWELVKEKHPHLSNLRQLRCLVIDEADRMVEKGHFAELSQLLEML  492

Query  392  PQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPK  451
                 +  R Q +V SATL    V +   +I+H      +   D               K
Sbjct  493  NDSQYNPSR-QTLVFSATLTL--VHQAPARILHKKHVKKMDKTD---------------K  534

Query  452  TDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAII  511
             D L +++G               +P         + I + + E  V  + E K     I
Sbjct  535  LDLLMQKVGM------------RGKP---------KVIDLTRNEGTVETLTETK-----I  568

Query  512  FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCV---------------CLHGDRKPHERKQ  556
             C T      L  + +Q  G      +  SC+                LH      +R +
Sbjct  569  HCETDEKDLYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDVMPLTLHACMHQKQRLR  628

Query  557  NLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAI  616
            NLE+F +     L+ TDVAARG+DI  V +VI+  +P   + Y+HR GR  RA   GL++
Sbjct  629  NLEQFARLQDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYIHRSGRTARAASEGLSL  688

Query  617  SLVATE  622
             L+  E
Sbjct  689  MLIGPE  694


 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 43/67 (64%), Gaps = 1/67 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESI-PLILGGGDVLMAAETGSGKTGAFSIP  59
            ++A+ ++ V   + +A+  + +  PT IQA ++ P I    D+L AAETGSGKT AF+IP
Sbjct  192  VSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIP  251

Query  60   VIQIVYE  66
            +I  V +
Sbjct  252  MIHSVLQ  258


>sp|Q6AZV7|DDX55_XENLA ATP-dependent RNA helicase DDX55 OS=Xenopus 
laevis OX=8355 GN=ddx55 PE=2 SV=1
Length=594

 Score = 100 bits (248),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 97/348 (28%), Positives = 152/348 (44%), Gaps = 57/348 (16%)

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL-E  337
            + K   N   ALI+ P+RELA Q    +  F K+   P+  ++L+IGG    D +    E
Sbjct  75   EEKLKKNQVGALIITPTRELAVQIDEVLSCFTKHF--PQFSQILLIGGSNPVDDVRKFKE  132

Query  338  NGVDIVVGTPGRLDDLVSTGKLNLSQV------RFLVLDEADGLLSQGYSDFINRMHNQI  391
            +G +I+V TPGRL+D+       L  V        L+LDEAD LL  G+   IN +   +
Sbjct  133  HGGNIIVATPGRLEDMFRRQADGLDLVICVKTLDVLILDEADRLLDMGFEASINTILGFL  192

Query  392  PQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPK  451
            P+    G      + SAT  + +++ L    +  P  + +K E  V  T           
Sbjct  193  PKQRRTG------LFSAT-QTQELENLVRAGLRNPVRIAVK-EKGVAATSTQ--------  236

Query  452  TDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAII  511
                     K+ IR  + +          + E +++ I  L+         + K ++ ++
Sbjct  237  ---------KTPIRLQNYYM------ICKADEKFNKLIAFLQ---------KRKQEKHLV  272

Query  512  FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLIC  571
            F  T   C  +E Y    G   +        +C+HG  K H+R +    F+K +   L+C
Sbjct  273  FFST---CACVEYY----GKALEMLLKPVKVMCIHGKMK-HKRNRIFTEFRKINSGILVC  324

Query  572  TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            TDV ARGIDIH V +V+    P     +VHR GR  R    G A+  +
Sbjct  325  TDVMARGIDIHEVNWVVQYDPPSSASAFVHRCGRTARIGHHGSALVFL  372


 Score = 48.9 bits (115),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 3/65 (5%)

Query  13  IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVY---ETLK  69
           I + +EE+ +   T +Q+ +IPL +   D+   A TGSGKT AF IP+++I+    E LK
Sbjct  20  IRRTLEELKFTHMTPVQSATIPLFMNNKDIAAEAITGSGKTLAFVIPLLEILLKREEKLK  79

Query  70  DQQEG  74
             Q G
Sbjct  80  KNQVG  84


>sp|A7TLA0|SUB21_VANPO ATP-dependent RNA helicase SUB2-1 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 
21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=SUB2-1 PE=3 SV=1
Length=441

 Score = 98.6 bits (244),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 153/349 (44%), Gaps = 60/349 (17%)

Query  283  LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN---G  339
            +P     +++  +RELA Q  N   +F KY+  P ++  +  GG        +L+N    
Sbjct  122  VPGEVSVVVICNARELAYQIRNEYLRFSKYM--PDVKTAVFYGGTPINKDAELLKNKETA  179

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
              IVV TPGRL  LV    ++LS V+  V+DE D +L +     + R    I + T   K
Sbjct  180  PHIVVATPGRLKALVRDKLIDLSHVKNFVIDECDKVLEELD---MRRDVQDIFRATPRDK  236

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              QV++ SATL S +++ +  + +  P  +++  +D    T+H +         + + +L
Sbjct  237  --QVMMFSATL-SEEIRPICRRFLQNP--LEIFVDDEAKLTLHGL--------QQYYTKL  283

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
             ++                              K     + + + + +Q IIF ++    
Sbjct  284  QENE-----------------------------KNRKLAQLLDDLEFNQVIIFVKSTKRA  314

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            + L +   +           F  + +HG  K  ER    + FK+ + R  + TDV  RGI
Sbjct  315  NELTKLLNESN---------FPAITVHGHMKQAERIARYKAFKEFEKRICVSTDVFGRGI  365

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT-EKEKVW  627
            DI  +   IN  L  E   Y+HR+GR GR    GLAIS V++ E E+V 
Sbjct  366  DIERINLAINYDLTTEADQYLHRVGRAGRFGTKGLAISFVSSPEDEEVL  414


 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 20/59 (34%), Positives = 36/59 (61%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +  + PE+A+A+ +  +  P+++Q  +IP  + G DVL  A++G GKT  F +  +Q
Sbjct  59   FKDFLLKPELARAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQ  117


>sp|Q6CQA1|MS116_KLULA ATP-dependent RNA helicase MSS116, mitochondrial 
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 
/ DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=MSS116 
PE=3 SV=1
Length=685

 Score = 100 bits (248),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 160/353 (45%), Gaps = 56/353 (16%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKL---RELLIIGGVAARDQLSVLEN-G  339
            P A KA+IV P+R+LA Q  + +K+ ++   NP L   R L +IGG      L  L    
Sbjct  209  PLAVKAVIVTPTRDLAIQIASEVKKLQQC--NPSLKSYRSLTLIGGTNLDKSLKDLHTLN  266

Query  340  VDIVVGTPGRLDDLVS-TGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
             +I+VGTPGR++D++   G      V F VLDEAD LL  G+   ++ +  ++ +  + G
Sbjct  267  PNIIVGTPGRINDILDRVGAKYFKDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQG  326

Query  399  KR-LQVIVCSATLHSFDVKKLSEKIMH-----FPTWVDLKGEDSVPDTVHHVVVPVNPKT  452
            +  ++ ++ SAT+   +V++L+  IM+     F   VD K +    D++   +V      
Sbjct  327  EEHIRTLLFSATM-DHNVQELAATIMNKKDCLFIDTVD-KNDSEAHDSIDQKLV------  378

Query  453  DRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF  512
                  + KS                    E     I+ ++ E     + + K  +AI+F
Sbjct  379  ------ITKSF------------------AESMVALIQSIESE-----LLQKKNFKAILF  409

Query  513  CRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICT  572
              T    D   +         +    +   +  HG     +R + ++RFKK +    +CT
Sbjct  410  LPTVKFVDFFSETL------SESLTKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCT  463

Query  573  DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            DV ARG+    V +V  + +P    NY+HRIGR  RA   G A   +  E+ K
Sbjct  464  DVGARGMHFPSVEHVYQLCVPTSLPNYIHRIGRTARAGESGAATIFLFREELK  516


 Score = 36.6 bits (83),  Expect = 0.91, Method: Compositional matrix adjust.
 Identities = 19/56 (34%), Positives = 32/56 (57%), Gaps = 1/56 (2%)

Query  13   IAQAVEEMDWLLPTDIQAESI-PLILGGGDVLMAAETGSGKTGAFSIPVIQIVYET  67
            + +A+  M +   T +Q  +I P++    DV+  A+TG+GKT AF  P+ Q +  T
Sbjct  149  VHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQHLIST  204


>sp|Q7RZ35|DBP4_NEUCR ATP-dependent RNA helicase dbp-4 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=dbp-4 PE=3 SV=1
Length=823

 Score = 100 bits (248),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 147/342 (43%), Gaps = 65/342 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            ALI+ P+RELA Q    +++  +   N      L+IGG + +++   L   ++I+V TPG
Sbjct  132  ALIISPTRELAVQIFEVLRKIGR---NHSFSAGLVIGGKSLKEEAERL-GRMNILVCTPG  187

Query  349  R-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            R L  L  T   ++  ++ LVLDEAD ++  G+   ++ +   +P      K  Q ++ S
Sbjct  188  RMLQHLDQTAGFDVDNLQMLVLDEADRIMDMGFQQAVDALVEHLP------KSRQTLLFS  241

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV----HHVVVPVNPKTDRLWERLGKSH  463
            AT  S  V  L+   +  P +V +    +    V    H++V P+  K D LW       
Sbjct  242  AT-QSKRVSDLARLSLKDPEYVSVHEAAASATPVGLQQHYIVTPLPEKLDTLW-----GF  295

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
            +RT+                + S+ I  +     VR + E        F R         
Sbjct  296  LRTN----------------LKSKIIVFMSSGKQVRFVYES-------FKRM--------  324

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
                 Q G P         + LHG +K   R +   RF       L  TDV ARG+D   
Sbjct  325  -----QPGIP--------LLHLHGRQKQIARLEITNRFTSAKYSCLFATDVVARGVDFPA  371

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            V +VI V  P++   Y+HR+GR  R E  G A+  +   +E+
Sbjct  372  VDWVIQVDCPEDADTYIHRVGRTARYESKGRAVLFLDPSEEE  413


 Score = 52.8 bits (125),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 26/62 (42%), Positives = 39/62 (63%), Gaps = 0/62 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS++ +    A  +    + + TD+Q  +IPL L G D+L AA TGSGKT AF +PV++ 
Sbjct  59   FSDLPLCEPTASGLRASHFEVLTDVQRAAIPLALKGQDILGAARTGSGKTLAFLVPVLEK  118

Query  64   VY  65
            +Y
Sbjct  119  LY  120


>sp|P90897|RDE12_CAEEL DEAD-box ATP-dependent RNA helicase rde-12 
OS=Caenorhabditis elegans OX=6239 GN=rde-12 PE=1 SV=4
Length=959

 Score = 100 bits (249),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 146/350 (42%), Gaps = 53/350 (15%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P ALI+ P+RELA Q     +  + Y  N  +  LL  G       L+ + NG DI++
Sbjct  457  DGPLALILAPTRELAAQIH---EALRTYCQNTDIIVLLSYGQSDRARSLNEIRNGCDILI  513

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV--TSDGKRLQ  402
            GT GR+ D      ++L  +RFLV DEAD LL     D +  +   I            Q
Sbjct  514  GTCGRIMDFTVKSHISLLHLRFLVFDEADRLLQDMKKDPLGHLGAIIKDAGFMESAATRQ  573

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
             I+ SAT ++  +   +E +   P      G+D         ++ +     RL +R+   
Sbjct  574  TIMTSATFNASVMTVANELMKRLP------GQDE--------MIKIVLANGRLSKRVNLE  619

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
                  +  K+            ++  +ILK     + +K       IIF + K  CD  
Sbjct  620  FFECKGLAEKN------------AKLREILKQNVNGKTLK------TIIFVQKKDQCDAC  661

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
                   G              LHGDR    R++ +  FK   V  L+ TD+ +RGID+ 
Sbjct  662  AAKLTSGG---------MLAQTLHGDRSQDMREKLINDFKSNRVNLLVTTDLLSRGIDVS  712

Query  583  GVPYVINVTLPDEKQN-----YVHRIGRVGRAERM--GLAISLVATEKEK  625
             +  VIN  LPD   +     ++HR GR GR  R   GL +S V  + ++
Sbjct  713  DLDRVINFDLPDGDPDQGADTFIHRAGRTGRTGRKENGLCVSFVDPQSDR  762


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (58%), Gaps = 0/64 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +++  G+ P I + ++ + +     IQ   IP +L G DVL  AET +GKT AF +P+
Sbjct  379  LTSWTNSGLHPTILETLKRIKYNNVRTIQGAMIPQVLDGHDVLGQAETSAGKTAAFGLPI  438

Query  61   IQIV  64
            I  +
Sbjct  439  IDKI  442


>sp|Q3EBD3|RH41_ARATH DEAD-box ATP-dependent RNA helicase 41 OS=Arabidopsis 
thaliana OX=3702 GN=RH41 PE=2 SV=1
Length=505

 Score = 99.0 bits (245),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 81/341 (24%), Positives = 145/341 (43%), Gaps = 57/341 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P A+++ P+REL  Q  +  K   K +     +  L++GG     QL  ++ GV++++GT
Sbjct  187  PLAMVLAPTRELCVQVEDQAKMLGKGL---PFKTALVVGGDPMSGQLYRIQQGVELIIGT  243

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGR+ DL+S   + L  +   VLDE D +L +G+ D       Q+ Q+     + QV++ 
Sbjct  244  PGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRD-------QVMQIFQALSQPQVLLF  296

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT+ S +V+K+   +      V + G  + P+                           
Sbjct  297  SATI-SREVEKVGGSLAKEIILVSI-GNPNKPNK--------------------------  328

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                         N   +W +A +  +  + +   + H    A+++  +++  D L    
Sbjct  329  -----------AVNQLAIWVDAKQKKQKLFDILRSQNHFKPPAVVYVSSRVGADLLANAI  377

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                G           + +HG++   ER+  +  F  G+V  L+ T V  RG+D+  V  
Sbjct  378  TVVTG--------VKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQ  429

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
            VI   +P   + Y+H IGR  R    G AI  V  +   ++
Sbjct  430  VIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDDRNLF  470


 Score = 51.2 bits (121),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 23/58 (40%), Positives = 37/58 (64%), Gaps = 0/58 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            F+  G+ P++   +E   +  PT IQ ++IP  L G  +L +A+TGSGKT +F +P+I
Sbjct  112  FTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPII  169


>sp|Q5BFU1|DBP4_EMENI ATP-dependent RNA helicase dbp4 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=dbp4 PE=3 SV=1
Length=812

 Score = 100 bits (248),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 147/342 (43%), Gaps = 65/342 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            ALI+ P+RELA Q    +++  +Y         L+IGG + +++   L   ++I+V TPG
Sbjct  123  ALIISPTRELAIQIFEVLRKIGRY---HTFSAGLVIGGKSLKEEQERL-GRMNILVCTPG  178

Query  349  R-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            R L  L  T       ++ LVLDEAD ++  G+   ++ +   +P         Q ++ S
Sbjct  179  RMLQHLDQTAFFETYNLQMLVLDEADRIMDMGFQKTVDAIIGHLP------PERQTLLFS  232

Query  408  ATLHSFDVKKLSEKIMHFPTWVDL--KGEDSVPDTV--HHVVVPVNPKTDRLWERLGKSH  463
            AT  +  V  L+   +  P +V +      + P  +  H+VV P+  K D LW     S 
Sbjct  233  AT-QTKKVSDLARLSLQDPEYVAVHEAASSATPSKLQQHYVVTPLPQKLDTLW-----SF  286

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
            IR++                + S+ I  +     VR +                     E
Sbjct  287  IRSN----------------LKSKTIVFMSSGKQVRFV--------------------YE  310

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +   Q G P         + LHG +K   R     RF +     L  TDVAARG+D   
Sbjct  311  SFRHMQPGIP--------LLHLHGRQKQGGRLDITTRFSQAQHAVLFSTDVAARGLDFPA  362

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            V +VI +  P++   Y+HR+GR  R ER G A+  +   +EK
Sbjct  363  VDWVIQLDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEEK  404


 Score = 47.4 bits (111),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 0/63 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +FS++ +       +    +   TDIQ+ +I   L G DVL AA+TGSGKT AF +P+++
Sbjct  49   SFSDLPISEPTLSGLTSSHFKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPILE  108

Query  63   IVY  65
             +Y
Sbjct  109  NLY  111


>sp|Q9UHI6|DDX20_HUMAN Probable ATP-dependent RNA helicase DDX20 
OS=Homo sapiens OX=9606 GN=DDX20 PE=1 SV=2
Length=824

 Score = 100 bits (248),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 86/333 (26%), Positives = 141/333 (42%), Gaps = 60/333 (18%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR  349
            LI+ P+RE+A Q  + I      ++   L   + IGG       + L+    I VG+PGR
Sbjct  134  LILAPTREIAVQIHSVITAIGIKMEG--LECHVFIGGTPLSQDKTRLKK-CHIAVGSPGR  190

Query  350  LDDLVSTGKLNLSQVRFLVLDEADGLLSQG-YSDFINRMHNQIPQVTSDGKRLQVIVCSA  408
            +  L+    LN   +R  +LDEAD LL +G + + IN +++ +P         Q++  SA
Sbjct  191  IKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASK------QMLAVSA  244

Query  409  TLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV----HHVVVPVNPKTDRLWERLGKSHI  464
            T   F    L+ K M  PT+V L   D  P  +    ++ VV   P   +++E       
Sbjct  245  TYPEFLANALT-KYMRDPTFVRLNSSD--PSLIGLKQYYKVVNSYPLAHKVFEE------  295

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                                        K ++          +QA++F        +L  
Sbjct  296  ----------------------------KTQHLQELFSRIPFNQALVFSNLHSRAQHLAD  327

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
                +G         F   C+ G+   ++R   + + K    R LI TD+ +RGID   V
Sbjct  328  ILSSKG---------FPAECISGNMNQNQRLDAMAKLKHFHCRVLISTDLTSRGIDAEKV  378

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAIS  617
              V+N+ +P + + Y+HRIGR GR   +GL ++
Sbjct  379  NLVVNLDVPLDWETYMHRIGRAGRFGTLGLTVT  411


 Score = 35.4 bits (80),  Expect = 2.5, Method: Compositional matrix adjust.
 Identities = 19/48 (40%), Positives = 31/48 (65%), Gaps = 1/48 (2%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFS-IPVIQIVYETLKDQ  71
            P+ +Q ++IPL   G D+++ A++G+GKT  FS I +  +V E L  Q
Sbjct  85   PSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQ  132


>sp|Q1KMD3|HNRL2_HUMAN Heterogeneous nuclear ribonucleoprotein 
U-like protein 2 OS=Homo sapiens OX=9606 GN=HNRNPUL2 PE=1 SV=1
Length=747

 Score = 99.8 bits (247),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 54/139 (39%), Positives = 79/139 (57%), Gaps = 13/139 (9%)

Query  119  WHGCRATKGLMKGKHYYEVS----------CHDQGLCRVGWSTMQASLDLGTDKFGFGFG  168
            W G R+T G+ KGK  +E            C +  L RVGWS   +   LG D+F +GF 
Sbjct  278  WSGARSTYGVTKGKVCFEAKVTQNLPMKEGCTEVSLLRVGWSVDFSRPQLGEDEFSYGFD  337

Query  169  GTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVK--FSKNGKDLGLAFEIPP-HMKNQ  225
            G G K+ N QF+ +G+ F  +D IGC+ + +   V+  FSKNG+DLG+AF I    + ++
Sbjct  338  GRGLKAENGQFEEFGQTFGENDVIGCFANFETEEVELSFSKNGEDLGVAFWISKDSLADR  397

Query  226  ALFPACVLKNAELKFNFGE  244
            AL P  + KN  ++ NFG+
Sbjct  398  ALLPHVLCKNCVVELNFGQ  416


>sp|Q59MW2|DBP6_CANAL ATP-dependent RNA helicase DBP6 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP6 
PE=3 SV=2
Length=606

 Score = 99.4 bits (246),  Expect = 3e-20, Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 163/363 (45%), Gaps = 45/363 (12%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGV-DIVVGTPG  348
            +I+ P++ L  Q  + + Q         L+   +   V+  D+   L   V DI+V TPG
Sbjct  253  IILVPTKPLINQVKSTLLQLSS---GTNLQIAALKNDVSINDEKDSLTKSVPDIIVSTPG  309

Query  349  RLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK----RLQVI  404
            RL + +    +NLS +++L++DEAD LL+Q + ++ N + ++I    +  +     +Q +
Sbjct  310  RLVEHLLNDSINLSSLQYLIIDEADRLLNQSFQNWSNVLLDKIDSQINIAEVWKLSVQKL  369

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            V SATL + D  KLS    + P  + +     + + +  V V ++           K H+
Sbjct  370  VFSATLTT-DAGKLSSLKFYNPRLIIVNDSKQLVNEIFTVPVTLSE---------FKIHL  419

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                  AK++ +P             ++  ++    I  +K+   +IF ++      L +
Sbjct  420  GV----AKNSLKP-------------LILTKFL---ISTNKLSNVLIFTKSNESSIRLTE  459

Query  525  YFIQQGGGPDKKGHQFSCVCLHG-DRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
                      K         ++  + +   R + L++F   +V  LI TD+ ARGID+  
Sbjct  460  LLTSLF---QKLSINLKIAFINSTNNRTSIRSKILKQFSNQEVNILITTDLIARGIDVAS  516

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS---SRGKGCYN  640
            +  VIN  LP+  + YVHR+GR  RA ++G A S    + E  W+   +   SR K   N
Sbjct  517  ITDVINYDLPNSSREYVHRVGRTARANQVGYAYSFCFGKGENSWFKKLAHEVSRSKEVEN  576

Query  641  TRL  643
              L
Sbjct  577  VDL  579


 Score = 40.4 bits (93),  Expect = 0.060, Method: Compositional matrix adjust.
 Identities = 23/63 (37%), Positives = 40/63 (63%), Gaps = 4/63 (6%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESI-PLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
              +MG     +  +  ++ +LP +I+A+ + P  +G  D+L+ A TGSGKT A+SIP+I+
Sbjct  184  LEKMGFTEAFSVQISVLNMMLP-EIEAQKLKPDRVG--DILVNASTGSGKTLAYSIPIIE  240

Query  63   IVY  65
             +Y
Sbjct  241  SLY  243


>sp|Q9SB89|RH27_ARATH DEAD-box ATP-dependent RNA helicase 27 OS=Arabidopsis 
thaliana OX=3702 GN=RH27 PE=2 SV=2
Length=633

 Score = 99.0 bits (245),  Expect = 3e-20, Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 152/349 (44%), Gaps = 60/349 (17%)

Query  279  QTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE  337
            + KF P N    L++ P+RELA Q+    K+  KY      +   +IGG   + +  +L 
Sbjct  218  RVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGK---VIGGEKRKTEAEILA  274

Query  338  NGVDIVVGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTS  396
             GV+++V TPGRL D L +T       ++FLV+DEAD +L Q + + + ++ N +P    
Sbjct  275  KGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLP----  330

Query  397  DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL-KGEDSVPDTVHHVVVPVNPKTDRL  455
              K  Q  + SAT  S  V+ L+   +  P ++D+ +G   V +        V P   RL
Sbjct  331  --KTRQTSLFSAT-QSAKVEDLARVSLTSPVYIDVDEGRKEVTNEGLEQGYCVVPSAMRL  387

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRT  515
               L                       + +    KI+      ++ K H    A +F   
Sbjct  388  LFLL--------------------TFLKRFQGKKKIMVFFSTCKSTKFH----AELFRYI  423

Query  516  KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA  575
            K DC       ++  GG D+                ++R     +F K +   L+CT+VA
Sbjct  424  KFDC-------LEIRGGIDQ----------------NKRTPTFLQFIKAETGILLCTNVA  460

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            ARG+D   V +++    PD   +Y+HR+GR  R E       LV T +E
Sbjct  461  ARGLDFPHVDWIVQYDPPDNPTDYIHRVGRTARGEGAKGKALLVLTPQE  509


 Score = 55.5 bits (132),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 0/63 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F  + +     ++++EM +   T IQA++IP ++ G DVL AA TGSGKT AF IP ++
Sbjct  155  TFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVE  214

Query  63   IVY  65
            ++Y
Sbjct  215  LLY  217


>sp|Q09775|ROK1_SCHPO ATP-dependent RNA helicase rok1 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=rok1 
PE=3 SV=1
Length=481

 Score = 98.2 bits (243),  Expect = 3e-20, Method: Compositional matrix adjust.
 Identities = 94/362 (26%), Positives = 151/362 (42%), Gaps = 67/362 (19%)

Query  283  LPNAPKALIVEPSRELAEQTLNNIKQFK-----KYIDNPKLRELLIIGGVAARDQLSVLE  337
            +P   +A+IV P+REL EQ     ++       K I+  K  E +       +++   L 
Sbjct  112  VPGGYRAIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKI-------QEKAPKLR  164

Query  338  NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD  397
               D+ +GTP RL   + TG L+  +V F V+DEAD L   G   FI +  + +   TS 
Sbjct  165  EKYDMCIGTPMRLVQAIQTG-LSFEKVEFFVMDEADRLFEPG---FIEQTDHILSACTSS  220

Query  398  GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWE  457
                   +C +   +             P+ V+   +    D +  +V   +  TD + +
Sbjct  221  N------ICKSLFSA-----------TIPSRVEELAKVVTVDPIRIIVGLKDAATDSIDQ  263

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
            RL                  G+++ ++      I  GE   R +         IF +   
Sbjct  264  RL---------------LFVGSDTSKIVILRQMISNGELKPRVV---------IFVQ---  296

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
            D +  +  + +        G       +HG+    +R++ L +F+KG++  LI TD+ AR
Sbjct  297  DIERAKALYTELLFDEIHVG------VIHGELPQAKREEALAKFRKGEIWVLIATDLLAR  350

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK-EKVWYHVCSSRGK  636
            GID HGV  VIN   P    +Y+HRIGR GRA   G A++    E  E +       R  
Sbjct  351  GIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDGEYIKLIAGVMRSS  410

Query  637  GC  638
            GC
Sbjct  411  GC  412


 Score = 35.8 bits (81),  Expect = 1.7, Method: Compositional matrix adjust.
 Identities = 18/37 (49%), Positives = 23/37 (62%), Gaps = 0/37 (0%)

Query  26   TDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            T IQ  +IP I    D+L  A TGSGKT A+  P++Q
Sbjct  70   TTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQ  106


>sp|A1DNF9|DBP4_NEOFI ATP-dependent RNA helicase dbp4 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp4 
PE=3 SV=1
Length=810

 Score = 99.0 bits (245),  Expect = 5e-20, Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 150/342 (44%), Gaps = 65/342 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            ALI+ P+RELA Q    +++  +Y         L+IGG + +++   L   ++I+V TPG
Sbjct  122  ALILSPTRELAIQIFEVLRKIGRY---HTFSAGLVIGGKSLKEEQERL-GRMNILVCTPG  177

Query  349  R-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            R L  L  T   +   ++ LVLDEAD +L  G+   ++ +   +P      K  Q ++ S
Sbjct  178  RMLQHLDQTALFDTYNLQMLVLDEADRILDLGFQQTVDAIIGHLP------KERQTLLFS  231

Query  408  ATLHSFDVKKLSEKIMHFPTWVDL--KGEDSVPDTV--HHVVVPVNPKTDRLWERLGKSH  463
            AT  +  V  L+   +  P +V +      + P  +  H+V+ P+  K D LW     S 
Sbjct  232  AT-QTKKVSDLARLSLQDPEYVAVHETASSATPSKLQQHYVITPLPQKLDILW-----SF  285

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
            IR++                + S+ +  L     VR +                     E
Sbjct  286  IRSN----------------LKSKTMVFLSSGKQVRFV--------------------YE  309

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +   Q G P         + LHG +K   R   + RF +     L  TDVAARG+D   
Sbjct  310  SFRHLQPGIP--------LMHLHGRQKQGGRLDIVTRFSQSKHCVLFSTDVAARGLDFPA  361

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            V +VI +  P++   Y+HR+GR  R ER G A+  +   +E+
Sbjct  362  VDWVIQLDCPEDADTYIHRVGRTARYEREGRAVLFLDPSEEE  403


 Score = 49.3 bits (116),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 39/63 (62%), Gaps = 0/63 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +FS++ +    A  +    +   TDIQ+ +I   L G DVL AA+TGSGKT AF +PV++
Sbjct  48   SFSDLPLSEPTASGLASSHYKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPVLE  107

Query  63   IVY  65
             +Y
Sbjct  108  NLY  110


>sp|Q13206|DDX10_HUMAN Probable ATP-dependent RNA helicase DDX10 
OS=Homo sapiens OX=9606 GN=DDX10 PE=1 SV=2
Length=875

 Score = 99.0 bits (245),  Expect = 5e-20, Method: Compositional matrix adjust.
 Identities = 92/343 (27%), Positives = 153/343 (45%), Gaps = 66/343 (19%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR  349
            LI+ P+RELA QT   +++  K   N      LIIGG   + +   + N ++I+V TPGR
Sbjct  145  LIISPTRELAYQTFEVLRKVGK---NHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGR  200

Query  350  L-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSA  408
            L   +  T   + + ++ LVLDEAD +L  G++D +N +   +P      K+ Q ++ SA
Sbjct  201  LLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLP------KKRQTLLFSA  254

Query  409  TLHSFDVKKLSEKIMHFP--TWVDLKGEDSVPDTV--HHVVVPVNPKTDRLWERLGKSHI  464
            T  +  VK L+   +  P   WV  K + S P T+  +++V  +  K   L+  L +SH+
Sbjct  255  T-QTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFL-RSHL  312

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
            +                                          ++I+F  +  +   L +
Sbjct  313  KK-----------------------------------------KSIVFFSSCKEVQYLYR  331

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
             F +   G        S + LHG ++   R +    F +     L  TD+AARG+D   V
Sbjct  332  VFCRLRPG-------VSILALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAV  384

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLA-ISLVATEKEKV  626
             +V+    P++   Y+HR GR  R +  G A + L+ +EK  V
Sbjct  385  NWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEKAMV  427


 Score = 55.5 bits (132),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 27/65 (42%), Positives = 43/65 (66%), Gaps = 0/65 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  FS+  +  +  + ++E  + L T+IQ ++I L L G DVL AA+TGSGKT AF +PV
Sbjct  68   ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPV  127

Query  61   IQIVY  65
            ++ +Y
Sbjct  128  LEALY  132


>sp|Q4WM60|DBP4_ASPFU ATP-dependent RNA helicase dbp4 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=dbp4 PE=3 SV=1
Length=787

 Score = 98.6 bits (244),  Expect = 6e-20, Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 150/342 (44%), Gaps = 65/342 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            ALI+ P+RELA Q    +++  +Y         L+IGG + +++   L   ++I+V TPG
Sbjct  122  ALILSPTRELAIQIFEVLRKIGRY---HTFSAGLVIGGKSLKEEQERL-GRMNILVCTPG  177

Query  349  R-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            R L  L  T   +   ++ LVLDEAD +L  G+   ++ +   +P      K  Q ++ S
Sbjct  178  RMLQHLDQTALFDTYNLQMLVLDEADRILDLGFQQTVDAIIGHLP------KERQTLLFS  231

Query  408  ATLHSFDVKKLSEKIMHFPTWVDL--KGEDSVPDTV--HHVVVPVNPKTDRLWERLGKSH  463
            AT  +  V  L+   +  P +V +      + P  +  H+V+ P+  K D LW     S 
Sbjct  232  AT-QTKKVSDLARLSLQDPEYVAVHETASSATPSKLQQHYVITPLPQKLDILW-----SF  285

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
            IR++                + S+ +  L     VR +                     E
Sbjct  286  IRSN----------------LKSKTMVFLSSGKQVRFV--------------------YE  309

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +   Q G P         + LHG +K   R   + RF +     L  TDVAARG+D   
Sbjct  310  SFRHLQPGIP--------LMHLHGRQKQGGRLDIVTRFSQSKHCVLFSTDVAARGLDFPA  361

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            V +VI +  P++   Y+HR+GR  R ER G A+  +   +E+
Sbjct  362  VDWVIQLDCPEDADTYIHRVGRTARYEREGRAVLFLDPSEEE  403


 Score = 48.9 bits (115),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 25/63 (40%), Positives = 39/63 (62%), Gaps = 0/63 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +FS++ +    A  +    +   TDIQ+ +I   L G D+L AA+TGSGKT AF +PV++
Sbjct  48   SFSDLPLSEPTASGLASSHYKTLTDIQSRAISHALKGRDILGAAKTGSGKTLAFLVPVLE  107

Query  63   IVY  65
             +Y
Sbjct  108  NLY  110


>sp|Q86B47|Y8611_DROME Probable ATP-dependent RNA helicase CG8611 
OS=Drosophila melanogaster OX=7227 GN=CG8611 PE=1 SV=1
Length=975

 Score = 98.6 bits (244),  Expect = 7e-20, Method: Compositional matrix adjust.
 Identities = 107/393 (27%), Positives = 174/393 (44%), Gaps = 71/393 (18%)

Query  289  ALIVEPSRELAEQTLNNIKQFKK---YIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            AL++ P+REL  QT   I++  K   +I    L     +GG + + + + L  G++I++G
Sbjct  405  ALVIVPTRELVMQTYELIQKLVKPYTWIVPGSL-----LGGESRKSEKARLRKGINILIG  459

Query  346  TPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK-----  399
            TPGRL D L+ T    L++++FL+LDEAD LL  GY   + ++   I +  ++ +     
Sbjct  460  TPGRLVDHLLHTASFKLTKLQFLILDEADRLLELGYERDVKQLVEAIDKQRAECEDKELP  519

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVD---------LKGED---------------  435
            +LQ ++ SATL S  V++L+   +  P ++D         LK +D               
Sbjct  520  QLQRMLLSATLTS-QVQQLAGLTLKNPLYIDNSDEAASAALKSKDGYQKETIEALLEVDD  578

Query  436  -------------SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSP  482
                         S+P+ +    V V PK  RL   +  S +   +V A         SP
Sbjct  579  GLGEYQEDVTGVLSIPENLQLSYVVVPPKL-RL---VALSSLLAKEVDA---------SP  625

Query  483  EMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGG-PDKKGHQFS  541
            + + +AI  +     V     H M    +  R   + D  E+      G  P  +G +F 
Sbjct  626  KQF-KAIVFMSTTEMVNF--HHDMLNEALTRRVLDEEDEQEKGDSDDDGDIPLLQGLRF-  681

Query  542  CVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH  601
               LHG     ER+     F+      L+ TDV  RGID+  +  V+  T P    ++VH
Sbjct  682  -FKLHGSMTQTERQGVFRGFRDCASCVLLATDVVGRGIDVPDIKLVVQYTPPQTTADFVH  740

Query  602  RIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            R+GR  RA R G A+  +   + +   H+   R
Sbjct  741  RVGRTARAGRKGRAVLFLTPSEAQFVRHLEKKR  773


 Score = 47.4 bits (111),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 24/67 (36%), Positives = 45/67 (67%), Gaps = 7/67 (10%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLP----TDIQAESIPLILGGGDVLMAAETGSGKTGAFS  57
            +  S +G+ P    AV+ ++ LL     T +Q ++IP +L G DVL+ ++TGSGKT A++
Sbjct  327  SKISTLGLHP---HAVKNLEDLLSIRELTSVQQKTIPEVLQGKDVLVRSQTGSGKTLAYA  383

Query  58   IPVIQIV  64
            +P+++++
Sbjct  384  LPLVELL  390


>sp|Q76PD3|DBP6_SCHPO ATP-dependent RNA helicase dbp6 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp6 
PE=2 SV=1
Length=604

 Score = 97.8 bits (242),  Expect = 8e-20, Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 161/385 (42%), Gaps = 99/385 (26%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL-----ENGVDI  342
            + +++ P+REL  Q     K F+ Y+    L+     G  + R +   L     E  +D+
Sbjct  207  RCVVIVPTRELTVQV---AKTFEYYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDV  263

Query  343  VVGTPGRLDDLVSTGK-LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQI----------  391
            +V TPGRL D +   +  +L  +R++V+DEAD LL Q + D+++ +  +I          
Sbjct  264  LVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEISHPKCLQNKS  323

Query  392  ----------PQVTSD---------GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
                      P    D            LQ +V SATL + D  K++   +H P  V ++
Sbjct  324  NILDLDQNISPTFLPDIDTLLPYRLPSPLQKLVFSATL-TRDPSKIASLKLHNPRLVLVQ  382

Query  433  GED----------------SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTR  476
             +D                SVP T+    V V+ +   L   L         +H+K+ T 
Sbjct  383  NKDMEVDDGGEIEDDAIVFSVPPTLQEYHVSVSSEKPILLYHL---------IHSKNLT-  432

Query  477  PGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKK  536
                        +  +K   A  A + H++ + I         ++L Q            
Sbjct  433  ----------NILCFVKSNEA--AARLHRLLELI--------HESLNQ------------  460

Query  537  GHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEK  596
               FSC          ERK+ + RF  GD+  L+C+D+ ARGID+     VIN   P   
Sbjct  461  --SFSCGLFTSSLSRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSV  518

Query  597  QNYVHRIGRVGRAERMGLAISLVAT  621
            ++YVHRIGR  RA R G A +LV +
Sbjct  519  RSYVHRIGRTARAGREGFAWTLVQS  543


 Score = 41.6 bits (96),  Expect = 0.031, Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 39/69 (57%), Gaps = 10/69 (14%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILG----------GGDVLMAAETGSGKT  53
            FS + +  ++ + +++ +      +QA  +PL+L           GGDV ++A TGSGKT
Sbjct  128  FSSLNISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKT  187

Query  54   GAFSIPVIQ  62
             ++ IP++Q
Sbjct  188  LSYVIPIVQ  196


>sp|Q1E9T9|DBP7_COCIM ATP-dependent RNA helicase DBP7 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DBP7 PE=3 SV=1
Length=769

 Score = 98.2 bits (243),  Expect = 8e-20, Method: Compositional matrix adjust.
 Identities = 114/424 (27%), Positives = 175/424 (41%), Gaps = 110/424 (26%)

Query  289  ALIVEPSRELAEQ---TLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            A+++ P+REL +Q    L+ + +   +I         +IGG   + + + L  G++I+V 
Sbjct  245  AIVLAPTRELCKQISVVLDGLLRCAHWI-----VAGTVIGGEKKKSEKARLRKGLNILVA  299

Query  346  TPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN---------RMHNQIPQVT  395
            TPGRL D L +T  L++S VR+LVLDE D L+  G+ + I          R  ++IP + 
Sbjct  300  TPGRLADHLENTKVLDVSNVRWLVLDEGDRLMDLGFEEEIQGIIKKLDERRRPSKIPDLP  359

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL  455
            +   +   I+CSATL   +V++L              GE S+ + +              
Sbjct  360  A---KRTTILCSATL-KMNVQRL--------------GEISLKEAI--------------  387

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK-------------  502
                   HI+ D     D  + G+  PE  + A   LK  YAV A K             
Sbjct  388  -------HIKADPADEDDEQKDGSKQPEFSAPA--QLKQSYAVVAAKLRLVTLTALLKRT  438

Query  503  ---EHKMDQAIIFCRTKIDCDNLEQYFIQQGGG---PD----------------KKGHQF  540
               +  + +AIIF       D   + F ++      PD                     F
Sbjct  439  FARKGSVMKAIIFVSCADSVDFHFEVFTRRESSEELPDADDENAPSSSNVHGSIATASAF  498

Query  541  SCVC-------LHGDRKPHERKQNLERF-KKGDVRFLICTDVAARGIDIHGVPYVINVTL  592
            S          LHG    H R   L  F K+ D   LICTDVAARG+D+  V +VI    
Sbjct  499  SNPSNNVILHKLHGSLPQHVRTATLSAFAKQKDASVLICTDVAARGLDLPNVDFVIEYDP  558

Query  593  PDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIW  652
                 +++HRIGR  R  R G A+  +    E+ +  +     KG Y    +E    ++ 
Sbjct  559  AFCSDDHLHRIGRTARLGRDGRALIFLLPGNEEGYVDIL----KGSY----REGSSNSVT  610

Query  653  YNEM  656
             NE+
Sbjct  611  RNEV  614


 Score = 40.4 bits (93),  Expect = 0.076, Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 3/75 (4%)

Query  4    FSEMGVMPEIA-QAVEEMDWLLPTDIQAESIPLILGGG-DVLMAAETGSGKTGAFSIPVI  61
            F+ +G+ P +A   + +++   PT IQ  SI  +L    D  + A+TGSGKT A+ +P++
Sbjct  157  FTSLGLSPSLATHLLTKLNLKTPTAIQKSSITQLLKEECDAFVQAQTGSGKTLAYLLPIV  216

Query  62   QIVYETLKDQQEGKK  76
            + +   +    +GKK
Sbjct  217  ERLMR-ISSHNKGKK  230


>sp|P0CR06|DBP10_CRYNJ ATP-dependent RNA helicase DBP10 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=DBP10 PE=3 SV=1
Length=802

 Score = 98.2 bits (243),  Expect = 9e-20, Method: Compositional matrix adjust.
 Identities = 95/356 (27%), Positives = 144/356 (40%), Gaps = 63/356 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPK--------------------LRELLIIGG  326
            P+ALI+ PSRELA Q     K   + ++  K                    LR  LIIGG
Sbjct  100  PRALILCPSRELAVQIYTVGKDLARGMNKGKGKGKNKNEDEEDEEGKGKEGLRWALIIGG  159

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 Q   + +  DIV+ TPGR   L+    ++L  ++ ++ DEAD L   G+   +  
Sbjct  160  EGMDAQFEKMSSNPDIVIATPGRFLHLIVEMHMDLRHLQTVIYDEADRLFEMGFDVQLQE  219

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVV  446
            + +++P         Q ++ SATL S  V + ++  +  P  V L  E  +   +     
Sbjct  220  ILHRLPSTR------QNLLFSATLPS-SVAEFAKAGLVNPLLVRLDAEQKISPDLALKFF  272

Query  447  PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM  506
             V P      E+     +   +V  K N +P    P                        
Sbjct  273  SVKP-----GEKEASLLVLLREVIGKPN-QPEPADPS---------------------SA  305

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
             QAI+F  TK   D + +     G         +    ++       R+Q L  F+    
Sbjct  306  PQAIVFVATKHHVDYVAELLRTTG---------YRTSLIYSSLDQVARQQQLAGFRSHQS  356

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
              L+ TDVAARG+DI  + +VIN   P   + +VHR+GR  RA R G A SL+  E
Sbjct  357  DVLVVTDVAARGLDIPIMDHVINYDFPAGPRIFVHRVGRTARAGRKGTAYSLIVKE  412


 Score = 38.1 bits (87),  Expect = 0.40, Method: Compositional matrix adjust.
 Identities = 22/58 (38%), Positives = 34/58 (59%), Gaps = 2/58 (3%)

Query  7   MGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGG--DVLMAAETGSGKTGAFSIPVIQ  62
           + V P++ +++    +  PT IQ  +IP  L     D+L  A TGSGKT A+ IP++Q
Sbjct  32  LNVGPDLIRSLLIRKFKTPTPIQRAAIPPALSTPPRDILGMARTGSGKTLAYLIPLLQ  89


>sp|P0CR07|DBP10_CRYNB ATP-dependent RNA helicase DBP10 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=DBP10 PE=3 SV=1
Length=802

 Score = 98.2 bits (243),  Expect = 9e-20, Method: Compositional matrix adjust.
 Identities = 95/356 (27%), Positives = 144/356 (40%), Gaps = 63/356 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPK--------------------LRELLIIGG  326
            P+ALI+ PSRELA Q     K   + ++  K                    LR  LIIGG
Sbjct  100  PRALILCPSRELAVQIYTVGKDLARGMNKGKGKGKNKNEDEEDEEGKGKEGLRWALIIGG  159

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 Q   + +  DIV+ TPGR   L+    ++L  ++ ++ DEAD L   G+   +  
Sbjct  160  EGMDAQFEKMSSNPDIVIATPGRFLHLIVEMHMDLRHLQTVIYDEADRLFEMGFDVQLQE  219

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVV  446
            + +++P         Q ++ SATL S  V + ++  +  P  V L  E  +   +     
Sbjct  220  ILHRLPSTR------QNLLFSATLPS-SVAEFAKAGLVNPLLVRLDAEQKISPDLALKFF  272

Query  447  PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM  506
             V P      E+     +   +V  K N +P    P                        
Sbjct  273  SVKP-----GEKEASLLVLLREVIGKPN-QPEPADPS---------------------SA  305

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
             QAI+F  TK   D + +     G         +    ++       R+Q L  F+    
Sbjct  306  PQAIVFVATKHHVDYVAELLRTTG---------YRTSLIYSSLDQVARQQQLAGFRSHQS  356

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
              L+ TDVAARG+DI  + +VIN   P   + +VHR+GR  RA R G A SL+  E
Sbjct  357  DVLVVTDVAARGLDIPIMDHVINYDFPAGPRIFVHRVGRTARAGRKGTAYSLIVKE  412


 Score = 38.1 bits (87),  Expect = 0.40, Method: Compositional matrix adjust.
 Identities = 22/58 (38%), Positives = 34/58 (59%), Gaps = 2/58 (3%)

Query  7   MGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGG--DVLMAAETGSGKTGAFSIPVIQ  62
           + V P++ +++    +  PT IQ  +IP  L     D+L  A TGSGKT A+ IP++Q
Sbjct  32  LNVGPDLIRSLLIRKFKTPTPIQRAAIPPALSTPPRDILGMARTGSGKTLAYLIPLLQ  89


>sp|Q0CMM5|DBP4_ASPTN ATP-dependent RNA helicase dbp4 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dbp4 
PE=3 SV=2
Length=804

 Score = 98.2 bits (243),  Expect = 9e-20, Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 150/342 (44%), Gaps = 65/342 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            ALI+ P+RELA Q    +++  +Y         L+IGG + +++   L   ++I+V TPG
Sbjct  121  ALILSPTRELAIQIFEVLRKVGRY---HHFSAGLVIGGKSLKEEQERL-GKMNILVCTPG  176

Query  349  R-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            R L  L  T   +   ++ LVLDEAD ++  G+   ++ +   +P      K  Q ++ S
Sbjct  177  RMLQHLDQTALFDTYNLQMLVLDEADRIMDMGFQKTVDAIIGHLP------KERQTMLFS  230

Query  408  ATLHSFDVKKLSEKIMHFPTWVDL--KGEDSVPDTV--HHVVVPVNPKTDRLWERLGKSH  463
            AT  +  V  L+   +  P +V +      + P T+  H+VV P+  K D LW     S 
Sbjct  231  AT-QTKKVSDLARLSLQDPEYVAVHEAAASATPSTLQQHYVVTPLPQKLDILW-----SF  284

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
            IR++                + S+ I  L     VR +                     E
Sbjct  285  IRSN----------------LKSKTIVFLSSGKQVRFV--------------------YE  308

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +   Q G P         + LHG +K   R     ++ +     L  TDVAARG+D   
Sbjct  309  AFRHLQPGIP--------LMHLHGRQKQGGRLDITTKYSQAKHAVLFSTDVAARGLDFPA  360

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            V +VI +  P++   Y+HR+GR  R ER G A+  +   +E+
Sbjct  361  VDWVIQLDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEEQ  402


 Score = 46.6 bits (109),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 0/63 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            AF+++ +       +    +   TDIQ+ ++   L G D+L AA+TGSGKT AF IPV++
Sbjct  47   AFTDLPLSEPTLSGLSASHYKTLTDIQSRAVSHALKGRDILGAAKTGSGKTLAFLIPVLE  106

Query  63   IVY  65
             +Y
Sbjct  107  NLY  109


>sp|Q5ZJF6|DDX10_CHICK Probable ATP-dependent RNA helicase DDX10 
OS=Gallus gallus OX=9031 GN=DDX10 PE=2 SV=1
Length=875

 Score = 98.2 bits (243),  Expect = 9e-20, Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 158/341 (46%), Gaps = 65/341 (19%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR  349
            LI+ P+RELA QT   +++  K   N      LIIGG   +++   + + +++++ TPGR
Sbjct  149  LIISPTRELAFQTFKVLRKVGK---NHDFSAGLIIGGKDLKEESERIHH-INMLICTPGR  204

Query  350  L-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSA  408
            L   +  T     S ++ L+LDEAD +L  G++D +N +   +P      K+ Q ++ SA
Sbjct  205  LLQHMDETSYFYASDLQMLILDEADRILDMGFADTMNAIIENLP------KKRQTLLFSA  258

Query  409  TLHSFDVKKLSEKIMHFP--TWVDLKGEDSVPDTV--HHVVVPVNPKTDRLWERLGKSHI  464
            T  +  VK L+   +  P   WV  K + S P T+  +++V  +  K + L+  L +SH+
Sbjct  259  T-QTKSVKDLARLSLKDPEYVWVHEKAKFSTPATLDQNYIVCELQHKINVLYSFL-RSHL  316

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
            +   +              ++  + K +  +Y  R           +FC+          
Sbjct  317  KKKSI--------------VFFASCKEV--QYLFR-----------VFCKL---------  340

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
                Q G P         + LHG ++  +R +    F +     L  TD+AARG+D   V
Sbjct  341  ----QPGLP--------VLALHGKQQQMKRMEVYTCFVRKKAAVLFATDIAARGLDFPAV  388

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
             +VI    P++   Y+HR+GR  R +  G A+ ++   +EK
Sbjct  389  NWVIQFDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEEK  429


 Score = 53.5 bits (127),  Expect = 6e-06, Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 42/62 (68%), Gaps = 0/62 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  +  +  + ++E  + + T+IQ ++I L L G DVL AA+TGSGKT AF +P +++
Sbjct  75   FSDFPLSKKTLKGLQEAQYRMVTEIQRQTIGLALQGKDVLGAAKTGSGKTLAFIVPALEL  134

Query  64   VY  65
            +Y
Sbjct  135  LY  136


>sp|Q9JJY4|DDX20_MOUSE Probable ATP-dependent RNA helicase DDX20 
OS=Mus musculus OX=10090 GN=Ddx20 PE=1 SV=2
Length=825

 Score = 98.2 bits (243),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 86/333 (26%), Positives = 147/333 (44%), Gaps = 60/333 (18%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR  349
            LI+ P+RE+A Q  + I      ++   L   + IGG       + L+    I VG+PGR
Sbjct  135  LILAPTREIAVQIHSVITAIGIKMEG--LECHVFIGGTPLSQDKTRLKK-CHIAVGSPGR  191

Query  350  LDDLVSTGKLNLSQVRFLVLDEADGLLSQG-YSDFINRMHNQIPQVTSDGKRLQVIVCSA  408
            +  L+    LN   +R  +LDEAD LL +G + + IN +++ +P         Q++  SA
Sbjct  192  IKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASK------QMLAVSA  245

Query  409  TLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV----HHVVVPVNPKTDRLWERLGKSHI  464
            T        L+ + M  PT+V L   D  P  +    ++ VV   P   +++E   + H+
Sbjct  246  TYPEVLANALT-RYMRDPTFVRLNPSD--PSLIGLKQYYQVVNSYPLAHKIFEEKTQ-HL  301

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
            +                 E++S+                   +QA++F        +L  
Sbjct  302  Q-----------------ELFSKV----------------PFNQALVFSNLHSRAQHLAD  328

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
                +G         F   C+ G+   ++R   + + K+   R LI TD+ +RGID   V
Sbjct  329  ILSSKG---------FPTECISGNMNQNQRLDAMAKLKQFHCRVLISTDLTSRGIDAEKV  379

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAIS  617
              V+N+ +P + + Y+HRIGR GR   +GL ++
Sbjct  380  NLVVNLDVPLDWETYMHRIGRAGRFGTLGLTVT  412


>sp|Q6BSM3|SPB4_DEBHA ATP-dependent rRNA helicase SPB4 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 
/ JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=SPB4 PE=3 SV=1
Length=614

 Score = 97.4 bits (241),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 87/340 (26%), Positives = 152/340 (45%), Gaps = 56/340 (16%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYI--DNPKLRELLIIGGVAA-RDQLS-VLENGVDIVV  344
            ++I+ P+RELA+Q      +  +YI  D   ++  L++G +++ R+ +   L N   I++
Sbjct  96   SIILSPTRELAKQIQTVFDKVLEYIPEDKATIKTQLLVGSLSSVREDIDYFLTNKTHILI  155

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D +S+  +  + V   VLDEAD LL   +   + ++  Q+P+    G      
Sbjct  156  ATPGRLLDFLSSNYVKTNSVEIAVLDEADKLLDISFERDVIKILKQLPKQRRTG------  209

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT+ S                 D      + + V  VV   N K          + +
Sbjct  210  LFSATISSAG---------------DTIFRTGMANPVKIVVKSKNSKN------AAPTSL  248

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                +H +  T+  A                  +  IK+++  + I++  T   C +++ 
Sbjct  249  NVSYMHVEPETKISA-----------------LIALIKDYRFQKCIVYFPT---CTSVKH  288

Query  525  YF-IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF----LICTDVAARGI  579
            ++ + Q     ++  ++    LHG      R + L+ F +GD       L+ TDVAARGI
Sbjct  289  FYSVFQTLVNVEEEDRYKFFSLHGQLSTKPRLKTLQNFSEGDSMLHKHVLLTTDVAARGI  348

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            DI  V  VI +  P +   + HR GR GRA ++G AI ++
Sbjct  349  DIPDVDLVIQLDPPTDPDVFFHRSGRTGRANKVGQAIVML  388


 Score = 53.1 bits (126),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 0/74 (0%)

Query  11  PEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKD  70
           P I +A++ + +   T +QA +IPL  G  DV++ A TGSGKT AF IPV+Q +   L +
Sbjct  19  PWIKEAIKSLGYPTMTPVQASTIPLFSGNKDVVVEAVTGSGKTLAFVIPVLQKLSNRLYN  78

Query  71  QQEGKKGKTTIKTG  84
             E  +    +K G
Sbjct  79  IDEEGENPEPVKKG  92


>sp|A3LWH3|DBP7_PICST ATP-dependent RNA helicase DBP7 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DPB7 PE=3 SV=2
Length=733

 Score = 97.8 bits (242),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 96/348 (28%), Positives = 157/348 (45%), Gaps = 36/348 (10%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            A+I+ P+RELA Q    ++   +   +  +   ++IGG   + + + +  GV+I+VGTPG
Sbjct  224  AVILTPTRELATQIYGVLETLTRCYHH--IVPGIVIGGEKKKSEKARIRKGVNILVGTPG  281

Query  349  RL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQI---PQVTSDGKRLQ--  402
            RL D + +T  L++SQ+R+L+LDE D L+  G+ + I ++ N I    Q+     + Q  
Sbjct  282  RLADHMENTESLDISQLRWLILDEGDKLVELGFEETITKITNLITRNSQIMESMHKWQGL  341

Query  403  -----VIVCSATLHSFDVKKLSEKIMHFPTWVD-------LKGEDSVPDTVHHVVVPVNP  450
                  ++CSAT+ + +V+KL   I++ P  +           E + PD +   VV V P
Sbjct  342  PVRRINLLCSATMQN-NVEKLGSIILNNPEMISDGSSSGKHSEEVTAPDQLIQNVVVVPP  400

Query  451  KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAI  510
            K   +        I +D     ++TR         S               K+ K D++ 
Sbjct  401  KLRLVTLSAILKKISSDMSGTNNSTRTIVFFSCSDSVNFHFDVFTRGGNTFKKVKNDESG  460

Query  511  IFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF---KKGDVR  567
                 +++ D      I QG    K         LHG      R   L+ F    K +  
Sbjct  461  KLETVEVENDT---PLIGQGTAVYK---------LHGSLSQQTRTSTLQAFIKDSKSNHS  508

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLA  615
             L CTDVA+RG+D+  +  VI    P    +++HRIGR  R  + G A
Sbjct  509  ILFCTDVASRGLDLPNIASVIEYDPPFTIDDHLHRIGRSARVGKEGTA  556


 Score = 37.0 bits (84),  Expect = 0.76, Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query  2    AAFSEMGVMPEIAQAVEE-MDWLLPTDIQAESIPLILGG-GDVLMAAETGSGKTGAFSIP  59
            + F  +G+   +++ + E + +  PT +Q   IP +L    D+ + A+TGSGKT +F +P
Sbjct  144  STFEGLGINERLSKHLTETLRFKNPTKVQKSVIPTMLSTERDLFIKAQTGSGKTLSFLLP  203

Query  60   VIQ  62
            +  
Sbjct  204  IFH  206


>sp|A5E3K3|DBP4_LODEL ATP-dependent RNA helicase DBP4 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP4 PE=3 SV=1
Length=775

 Score = 97.8 bits (242),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 153/343 (45%), Gaps = 67/343 (20%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            ALIV P+RELA Q    + +  KY         L+ GG   + +   +   ++I+VGTPG
Sbjct  123  ALIVSPTRELAVQIFEVLAKIGKY---NSFSAGLVTGGKDVQYEKERISR-MNILVGTPG  178

Query  349  RLDD-LVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            R+   L  +  +  S ++ LVLDEAD  L  G+   I+ + N +P+        Q ++ S
Sbjct  179  RISQHLNESVGMETSNLQVLVLDEADRCLDMGFRKQIDNILNHLPRTR------QTLLFS  232

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGE---DSVPDTV--HHVVVPVNPKTDRLWERLGKS  462
            AT H+  V+ L+   +  P  +    +    ++P+++  ++V VP+N K D LW  + KS
Sbjct  233  AT-HTDSVQDLARLSLTNPKRIGTSSDQDISAIPESLDQYYVKVPLNEKLDVLWSFI-KS  290

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
            H+++                       KIL                 + F  +K      
Sbjct  291  HLKS-----------------------KIL-----------------VFFSSSKQVQYAY  310

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
            E +   Q G P         + L+G  K   R +   +F +     L  TD+ ARG+D  
Sbjct  311  ETFRTLQPGIP--------LMKLYGRHKQTSRLETTVKFSQAQHACLFATDIVARGLDFP  362

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLA-ISLVATEKE  624
             + +VI V  P++   YVHR+GR  R  R G + + L+ TE++
Sbjct  363  AIDWVIQVDCPEDVATYVHRVGRSARFGRQGKSLLMLLPTEED  405


 Score = 55.1 bits (131),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 41/61 (67%), Gaps = 0/61 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS++ +     + ++E  ++  TDIQ +SIP+ L G D++  A TGSGKT AF IPVI+I
Sbjct  50   FSDLPITQNTLRGLKECSFVSLTDIQKKSIPVALKGEDLMGTARTGSGKTLAFLIPVIEI  109

Query  64   V  64
            +
Sbjct  110  L  110


>sp|P0C218|DDX20_DANRE Probable ATP-dependent RNA helicase DDX20 
OS=Danio rerio OX=7955 GN=ddx20 PE=3 SV=1
Length=761

 Score = 97.4 bits (241),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 149/338 (44%), Gaps = 63/338 (19%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + L++ P+RE+A Q    +      ++   L   + IGG         L+    I +G+P
Sbjct  96   QVLVLAPTREIAVQIHAVVMAIGSAMEG--LECHVFIGGRPISQDKQHLKK-CHIAIGSP  152

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLL----SQGYSDFINRMHNQIPQVTSDGKRLQV  403
            GR+  L+  G L +S +R  VLDEAD LL    S  + + IN +++ +P         Q+
Sbjct  153  GRIKQLIEMGALMVSSIRLFVLDEADKLLEDDSSSSFQEQINWIYSSLP------ANKQM  206

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV----HHVVVPVNPKTDRLWERL  459
            +  SAT      ++LS + M  PT+V L   D  P  +    ++ +VP +    +++E  
Sbjct  207  LALSATYPESLAQQLS-RYMREPTFVRLNPTD--PGLLGLKQYYKIVPSHSLPHKVFEEK  263

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
             +S +                  E++S+                   +QA++F       
Sbjct  264  VQSLL------------------ELFSKI----------------PFNQALVFSNLHTRA  289

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
             +L      +G            VC+ G     +R + + + K+   R LI TD+ +RGI
Sbjct  290  QHLADILSSKG---------LPAVCISGGLSQDQRLEAMWKLKQYQCRVLISTDLTSRGI  340

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAIS  617
            D   V  VIN+ +P + + Y+HRIGR GR   +G+A++
Sbjct  341  DAEKVNLVINLDVPQDWETYMHRIGRAGRFGTLGVAVT  378


>sp|Q5APM7|MS116_CANAL ATP-dependent RNA helicase MSS116, mitochondrial 
OS=Candida albicans (strain SC5314 / ATCC MYA-2876) 
OX=237561 GN=MSS116 PE=3 SV=2
Length=668

 Score = 97.4 bits (241),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 172/395 (44%), Gaps = 64/395 (16%)

Query  289  ALIVEPSRELA---EQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
             +++ P+R+LA   E+    +    KY + P L   LIIGG   R   +      +IV+ 
Sbjct  160  TVVLVPTRDLAFQIEEEYRKLISHLKYNERPNLE--LIIGG--QRTSFNP-RRPAEIVIA  214

Query  346  TPGRLD-DLVSTGKLN--LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            TPGRL+ +L +  KL    S V + + DEAD LL  G+   +N +   + +V +  K ++
Sbjct  215  TPGRLEKELQTDRKLAKCFSNVTYRIYDEADRLLDVGFESVLNEIDGLLYKVRTTPKPIK  274

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDL----KGEDSVPDTVHHVVVPVNPKTDRLWER  458
             ++ SAT+    + + S+K +H P +  L    K +  +P+ +H  ++      D++   
Sbjct  275  SLLFSATVDE-AISEFSKKHIH-PEYEFLNTVTKDDLEIPENIHQQLIECTDGIDKVNVS  332

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
            L + H                                     +K+H   + I+F  TK  
Sbjct  333  LSELH-----------------------------------GIMKQHNDYKVIVFLPTKTA  357

Query  519  CDNLEQYFIQQGGGPDKKGHQFS----CVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
             D   +Y        D+    FS       LHG R   +R   L+ FK      LI TDV
Sbjct  358  VDWFYEYIT--NALDDELFELFSKPPRVFMLHGGRSVRQRSAALKGFKVAKKGILISTDV  415

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            AARGID+  V  V+ +    E  +Y+H++GR GRA + G A SL AT  E  +  +   +
Sbjct  416  AARGIDVKDVTNVMQMFPSVEIADYIHKVGRTGRAGKKGKA-SLFATPAELPYVSLLKRK  474

Query  635  GKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCT  669
             K  +   ++ +       N   ++ +IE  L+ T
Sbjct  475  RKVKFQEVIQSEK-----LNSSNIIDQIESPLDST  504


 Score = 34.3 bits (77),  Expect = 4.6, Method: Compositional matrix adjust.
 Identities = 18/55 (33%), Positives = 33/55 (60%), Gaps = 1/55 (2%)

Query  13   IAQAVEEMDWLLPTDIQAES-IPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYE  66
            I  ++ + D+   T IQ +S +P+      ++  A+TG+GKT AF++P +Q  Y+
Sbjct  98   IINSLHKNDFKELTPIQQKSLVPIFNTEKGLVCRAKTGTGKTLAFAVPTLQYAYK  152


>sp|Q54S03|DDX18_DICDI Probable ATP-dependent RNA helicase ddx18 
OS=Dictyostelium discoideum OX=44689 GN=ddx18 PE=3 SV=1
Length=602

 Score = 97.1 bits (240),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 88/339 (26%), Positives = 147/339 (43%), Gaps = 68/339 (20%)

Query  277  VTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
            + ++ F P N    +I+ P+RELA Q     ++  KY         ++IGG + + +   
Sbjct  181  LVKSNFKPRNGTGVIIISPTRELALQIYGVARELMKYHTQ---THGIVIGGASKKPEEER  237

Query  336  LENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV  394
            LE GV+++V TPGR LD L +T       ++ L++DEAD +L  G+ + ++++  ++P+ 
Sbjct  238  LEKGVNLLVATPGRLLDHLQNTKGFITKNLKCLIIDEADRILEVGFEEEMHQIIKKVPKT  297

Query  395  TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-----HVVVPVN  449
                ++  +   + T    D+ K+S  + + P +V +  E  +  TV      +VV P  
Sbjct  298  ----RQTMLFSATQTRKVDDIAKVS--LNNSPVYVGVDDEREI-STVEGLEQGYVVCPSE  350

Query  450  PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA  509
             +   L+  L K+                     +  + I  L    AV+   E      
Sbjct  351  RRFLLLYTFLKKN---------------------LSKKIIVFLSSCNAVKYTAE------  383

Query  510  IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL  569
                   ID   LE                     LHG +K  +R      F   +   L
Sbjct  384  ---LLNYIDIPVLE---------------------LHGRQKQQKRTNTFYEFVNAEKGIL  419

Query  570  ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
            ICTDVAARG+DI  V ++I    PD+ + Y+HR+GR  R
Sbjct  420  ICTDVAARGLDIPSVDWIIQYDPPDDPKEYIHRVGRTAR  458


 Score = 53.1 bits (126),  Expect = 6e-06, Method: Compositional matrix adjust.
 Identities = 28/64 (44%), Positives = 42/64 (66%), Gaps = 0/64 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS + +     +++EEM +   T IQA+SI  +L G D+L AA TGSGKT AF IP I++
Sbjct  121  FSNLPIEENTKKSIEEMGFKKMTPIQAKSILPLLEGKDLLGAARTGSGKTLAFLIPAIEV  180

Query  64   VYET  67
            + ++
Sbjct  181  LVKS  184


>sp|A7TFZ9|DBP6_VANPO ATP-dependent RNA helicase DBP6 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=DBP6 PE=3 SV=1
Length=637

 Score = 96.7 bits (239),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 95/357 (27%), Positives = 165/357 (46%), Gaps = 60/357 (17%)

Query  285  NAPKALIVEPSRELAEQ---TLNNIKQFKKYIDN-PKLRELLIIGGVAARDQLSVLENGV  340
            N  +AL++ P++ L  Q   T NN+ Q    I +  KL   L        +   +L+N  
Sbjct  259  NKLRALVIVPTKLLINQVYETFNNLAQGTSLIVSISKLENSL------KEENKKLLQNEP  312

Query  341  DIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR  400
            DI++ TPGRL D + +G +NL  ++FLVLDEAD LL+Q + ++ N + N++     D   
Sbjct  313  DILITTPGRLVDHLQSGAVNLRNLKFLVLDEADRLLNQSFQNWCNELLNKLKTDKQDHMP  372

Query  401  LQVI--VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER  458
              ++  V SATL + + +KL     + P          V D+V    +P      R+ + 
Sbjct  373  GNIVKMVFSATLTT-NTEKLHGLQFYNPKLF-------VMDSVKLYHLP------RMLQE  418

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTK--  516
                HI T    AK + +P                  + +R + E    + ++F ++   
Sbjct  419  YN-LHIPT----AKTSYKPL-----------------FLLRLLSEINGSKMLVFVKSNES  456

Query  517  -IDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD----VRFLIC  571
             +   +L    I+      K G QF    ++ +    E ++ +  F   +    V+ LI 
Sbjct  457  SLRLASLLSIMIEH-----KLGSQFDINSVNSNNTKAENRRIVNEFASNNNTSKVQVLIT  511

Query  572  TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            TDV +RG+DI+ +  V+N  +P   Q Y+HR GR  RA+  G A +++  + E+ ++
Sbjct  512  TDVMSRGVDINDITDVLNYDVPISSQQYIHRCGRTARAQSKGTAYNMLIGKGERTFW  568


 Score = 40.4 bits (93),  Expect = 0.062, Method: Compositional matrix adjust.
 Identities = 17/25 (68%), Positives = 22/25 (88%), Gaps = 0/25 (0%)

Query  40   GDVLMAAETGSGKTGAFSIPVIQIV  64
            GDVL+ A TGSGKT A+SIP++QI+
Sbjct  229  GDVLVNASTGSGKTLAYSIPILQIL  253


>sp|A5DGM4|SPB4_PICGU ATP-dependent rRNA helicase SPB4 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=SPB4 PE=3 
SV=2
Length=601

 Score = 96.7 bits (239),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 152/344 (44%), Gaps = 70/344 (20%)

Query  290  LIVEPSRELAEQ---TLNNIKQFKKYIDNPKLRELLIIGGVAA-RDQLSVL-ENGVDIVV  344
            +++ P+RELA Q     + + QF    D P ++  LI+G +A  R+ L+   EN   I++
Sbjct  92   IVISPTRELANQINTVFHTLLQFYPE-DQPPIKTQLIVGSLATVREDLNAFAENKPQIII  150

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D  S+  +  S V  +VLDEAD LL   + + +  +  ++P+    G      
Sbjct  151  ATPGRLLDFFSSNAVKRSTVEMVVLDEADRLLDISFQNDVVSILKKLPKQRRTG------  204

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGE--DSVPDTVHHVVVPVNPKTDRLWERLGKS  462
            + SATL S     +    M  P  + +     +S P ++    + VNP+T          
Sbjct  205  LFSATLSSAG-DSIFRTGMSNPVKISVNSNKAESKPQSLTVNYMMVNPET----------  253

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
                                      I +L     +  +   +  + I++  T   C ++
Sbjct  254  -------------------------KIAVL-----INMLSTLQYKKCIVYFPT---CASV  280

Query  523  EQYFIQQGGGPDKKGHQFSCVCL---HGDRKPHERKQNLERFKKGDVR----FLICTDVA  575
            + ++        +K H    V L   HG      R + + +F +GDVR     L+ TDVA
Sbjct  281  KYFY-----SVFQKLHPLEDVNLTSIHGQLLAKARLKAMNKFTEGDVRTSKHVLLTTDVA  335

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            ARGIDI  V  VI +  P +   ++HR GR GRA ++G AI ++
Sbjct  336  ARGIDIPEVDLVIQLDPPTDPDMFLHRCGRTGRANKVGRAIVML  379


 Score = 57.0 bits (136),  Expect = 5e-07, Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 46/70 (66%), Gaps = 0/70 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           A+S+  + P I  A++ + +   T +QA +IPL  G  DV++ A TGSGKT AF+IPV++
Sbjct  15  AWSQASLQPWIHDAIDSLGFRSMTPVQASTIPLFCGNKDVVVEAVTGSGKTLAFAIPVLE  74

Query  63  IVYETLKDQQ  72
            V + +K+ +
Sbjct  75  RVTKCMKENR  84


>sp|Q2UUN6|HAS1_ASPOR ATP-dependent RNA helicase has1 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=has1 
PE=3 SV=2
Length=596

 Score = 96.3 bits (238),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 98/365 (27%), Positives = 163/365 (45%), Gaps = 66/365 (18%)

Query  277  VTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
            ++  +F P N   A+IV P+RELA Q    +++    + +      ++IGG   R +   
Sbjct  181  LSALRFKPRNGTGAIIVSPTRELALQIFGQVREL---LAHHSQTYGIVIGGANRRAEAEK  237

Query  336  LENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV  394
            L  GV+++V TPGR LD L +T       +R L++DEAD +L  G+ D + ++   +P  
Sbjct  238  LMKGVNLLVATPGRLLDHLQNTQGFVFKNLRTLIIDEADRILEVGFEDEMRQIAKILP--  295

Query  395  TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDR  454
                +  Q ++ SAT  +  V+ L+                                  R
Sbjct  296  ---SENRQTMLFSAT-QTTKVEDLA----------------------------------R  317

Query  455  LWERLGKSHIRTDDVHAKD-NTRPGANSPEMWSEAIK--ILKGEYAVRAIKEHKMDQAII  511
            +  R G  +I  D  H K+ +T  G     +  EA K  +L   +  R +K+    + I+
Sbjct  318  ISLRPGPLYINVD--HRKEHSTVEGLEQGYVICEADKRFLLLFSFLKRNLKK----KIIV  371

Query  512  FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLIC  571
            F  +   C++++ Y      G          + LHG +K  +R      F       LIC
Sbjct  372  FLSS---CNSVKYY------GELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGTLIC  422

Query  572  TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY--H  629
            TDVAARG+DI  V ++I    PD+ ++Y+HR+GR  R    G   SL+  +  +V +  H
Sbjct  423  TDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGSN-GKGRSLMFLQPSEVGFLKH  481

Query  630  VCSSR  634
            +  +R
Sbjct  482  LKEAR  486


 Score = 55.5 bits (132),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 26/61 (43%), Positives = 42/61 (69%), Gaps = 0/61 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+E+G+  +  + +E M +   T++Q  +IP +L G DVL AA+TGSGKT +F IP I++
Sbjct  121  FTELGLSEKTMKGIEGMGFETMTEVQRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAIEM  180

Query  64   V  64
            +
Sbjct  181  L  181


>sp|Q761Z9|RH18_ORYSJ DEAD-box ATP-dependent RNA helicase 18 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os01g0164500 PE=1 
SV=2
Length=647

 Score = 96.7 bits (239),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 99/360 (28%), Positives = 159/360 (44%), Gaps = 49/360 (14%)

Query  284  PNAPK-----ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            P+ PK      +I+ P+REL+ Q  N  + F   +    +  +L++GG   + +L  LE 
Sbjct  89   PSPPKPHEVLGIIISPTRELSSQIYNVAQPFFATLKG--VSSMLLVGGFDIKAELKKLEE  146

Query  339  -GVDIVVGTPGRLDDLVST-GKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTS  396
             G +I+VGTPG+L D++     LN   +  L+LDEAD LL  G+   I  + +++P++  
Sbjct  147  EGANILVGTPGKLFDVMERLDTLNYKNLEILILDEADRLLDLGFQKQITSIISKLPKLRR  206

Query  397  DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPK-TDRL  455
             G      + SAT  +  VK+L++  +  P  V++K E             V P   D  
Sbjct  207  TG------LFSAT-QTEAVKELAKAGLRNPVRVEVKTE-------------VKPTGKDGA  246

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRT  515
             + LG S            T  G     M  EA    K    V  + ++   + +++  T
Sbjct  247  QQELGPS-----------KTPLGLRLEYMICEASN--KSSQLVDFLVQNNGKKIMVYFAT  293

Query  516  KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA  575
               C  ++ + I        KG     +  HG  K   R++ L  F       L+CTDVA
Sbjct  294  ---CACVDYWAIVLPLLDSLKGS--PIIPYHGKMKQGPREKALASFSALSSGILVCTDVA  348

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRG  635
            ARG+DI  V  ++    P +   ++HR GR  R ++ G AI  +   KE  +      RG
Sbjct  349  ARGLDIPHVDLIVQYDPPQDPNVFIHRAGRTARYDQEGDAIVFLLP-KEDTYVEFLKRRG  407


 Score = 51.2 bits (121),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 27/63 (43%), Positives = 42/63 (67%), Gaps = 2/63 (3%)

Query  4   FSEM--GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
           FSE+   + PE+ +A++   +   T +QA +IPL+L   DV + A TGSGKT AF +PV+
Sbjct  23  FSELSPALSPEVVKALKGGGFRRCTPVQAAAIPLLLSHKDVAVDAATGSGKTLAFVVPVV  82

Query  62  QIV  64
           +I+
Sbjct  83  EIL  85


>sp|Q6FY67|MAK5_CANGA ATP-dependent RNA helicase MAK5 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=MAK5 PE=3 SV=1
Length=733

 Score = 96.7 bits (239),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 87/355 (25%), Positives = 154/355 (43%), Gaps = 49/355 (14%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYI--DNPKLRELLIIGGVAARDQLSVL--ENGVDIVVG  345
            +I  P+RELA+Q   +++     +   NP +  L + GG++ + Q  +L  +    IVV 
Sbjct  229  IIFTPTRELAQQVTKHLQNVCSMLLKKNPYMI-LSLTGGLSIQKQERLLKYDGSARIVVA  287

Query  346  TPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL-  401
            TPGR  +L+   +      +++  LVLDEAD LL  G+ D   ++   + ++    K + 
Sbjct  288  TPGRFLELIEKNEELMKRFAKIDVLVLDEADRLLQDGHFDEFEKILKHLGRIRKSLKNME  347

Query  402  --QVIVCSATLHSFDVKKLSEKIMHFPTWV---DLKGEDSVPDTVHHVVVPVNPKTDRLW  456
              Q ++ SAT  +    KL+       +W    + K E  +   + H++  +N K+  + 
Sbjct  348  YWQTLIYSATFSTDLFDKLAN-----SSWKKKNNSKDESEMESVLKHLMTKINFKSKPMM  402

Query  457  ERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTK  516
                        + A    +  A   E   E   + +  Y    +  +     +IFC + 
Sbjct  403  ------------IDANPEDKISAQIKESLIECAPLERDLYCYYFVTLYP-GTTLIFCNSI  449

Query  517  IDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK--------GDVRF  568
                 L  Y I  G          +   +H       R +NLE+F+         G    
Sbjct  450  ESVKKLNAYLINLG---------INSFQIHSSMTQKNRLKNLEKFEAMASKNNHLGKPTV  500

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
            LI +DVAARG+DI G+ +V++  LP     Y+HR GR  R +  G+A+ + + ++
Sbjct  501  LIASDVAARGLDIKGIKHVVHYHLPHSADTYIHRSGRTARGDNEGVAVMICSPQE  555


 Score = 41.6 bits (96),  Expect = 0.032, Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 25/37 (68%), Gaps = 0/37 (0%)

Query  26   TDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            T IQ  SIP  L G D++  A TGSGKT A+ IP+I+
Sbjct  179  TPIQKLSIPAALEGKDIMGKASTGSGKTLAYGIPIIE  215


>sp|A7F8V8|DBP7_SCLS1 ATP-dependent RNA helicase dbp7 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=dbp7 PE=3 SV=1
Length=877

 Score = 97.1 bits (240),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 100/375 (27%), Positives = 173/375 (46%), Gaps = 40/375 (11%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            A+I+ P+REL +Q    +++  +    P +    + GG + + + + L  GV+I+V TPG
Sbjct  337  AIILSPTRELCKQIAAVLEKVLRCA--PWIVGTTVNGGESKQSEKARLRKGVNILVATPG  394

Query  349  RL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQI---------PQVTSDG  398
            RL D L +T  LN++ VR+LVLDE D L+  G+ + I  +  +I          ++ S  
Sbjct  395  RLADHLDNTEVLNVATVRWLVLDEGDRLMELGFEEEIKGIVEKIGRRSVASGSSEMMSLP  454

Query  399  KRLQVIVCSATLHSFDVKKLSE-------KIMHFPTWVD-------LKGED---SVPDTV  441
            KR   I+CSAT+   +V++L E        I   P+  +       ++ +D   S P  +
Sbjct  455  KRRVTILCSATM-KMNVQRLGEISLKDAVHIQADPSEQEKQDKANGIEADDKAFSAPTQL  513

Query  442  --HHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVR  499
               + +VP   +   L   L ++  R   V         A+S + +  ++     E +  
Sbjct  514  KQSYAIVPAKLRLVTLTALLKRAFARKGSVMKAIVFMSCADSVD-FHFSLFSRSAEKSAE  572

Query  500  AIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLE  559
            A +E K+D         +    L +  I  G       +      LHG    + R   L+
Sbjct  573  ASEEGKVDPPT------LPKSELIKETITHGATISNNSNPVILHKLHGSLAQNIRTATLK  626

Query  560  RF-KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
             + +  D   LICTDVA+RG+D+  V +VI    P   ++++HR+GR  RA R G A+  
Sbjct  627  AYSESADPCVLICTDVASRGLDLPNVDFVIEYDPPFSAEDHLHRVGRTARAGREGRALIF  686

Query  619  VATEKEKVWYHVCSS  633
            +    E+ +  + +S
Sbjct  687  LMPGTEEEYVSILAS  701


 Score = 43.1 bits (100),  Expect = 0.011, Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 2/66 (3%)

Query  1    MAAFSEMGVMPEIAQAVE-EMDWLLPTDIQAESIP-LILGGGDVLMAAETGSGKTGAFSI  58
            MA F+ +G+   +A  +  ++D   PT IQ  S+  LI    D  + AETGSGKT A+ +
Sbjct  254  MATFTNLGLSRRLAAHLSTKLDMKAPTAIQKASVTQLISDDSDAFIQAETGSGKTLAYLL  313

Query  59   PVIQIV  64
            P+++ +
Sbjct  314  PIVERI  319


>sp|Q80Y44|DDX10_MOUSE Probable ATP-dependent RNA helicase DDX10 
OS=Mus musculus OX=10090 GN=Ddx10 PE=1 SV=2
Length=875

 Score = 96.7 bits (239),  Expect = 3e-19, Method: Compositional matrix adjust.
 Identities = 88/341 (26%), Positives = 153/341 (45%), Gaps = 65/341 (19%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR  349
            LI+ P+RELA QT   +++  K   N      LIIGG   + +   + N ++I+V TPGR
Sbjct  145  LIISPTRELAYQTFEVLRKVGK---NHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGR  200

Query  350  L-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSA  408
            L   +  T   + + ++ LVLDEAD +L  G++D +N +   +P      K+ Q ++ SA
Sbjct  201  LLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLP------KKRQTLLFSA  254

Query  409  TLHSFDVKKLSEKIMHFP--TWVDLKGEDSVPDTV--HHVVVPVNPKTDRLWERLGKSHI  464
            T  +  VK L+   +  P   WV  K + S P T+  ++++  ++ K   L+  L +SH+
Sbjct  255  T-QTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYIICELHQKISVLFSFL-RSHL  312

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
            +                                          ++I+F  +  +   L +
Sbjct  313  KK-----------------------------------------KSIVFFSSCKEVQYLYR  331

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
             F +   G        S + LHG ++   R +    F +     L  TD+AARG+D   V
Sbjct  332  VFCRLRPG-------ISILALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAV  384

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
             +V+    P++   Y+HR GR  R +  G A+ ++   +E+
Sbjct  385  NWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEQ  425


 Score = 55.8 bits (133),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 27/65 (42%), Positives = 43/65 (66%), Gaps = 0/65 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  FS+  +  +  + ++E  + L T+IQ ++I L L G DVL AA+TGSGKT AF +PV
Sbjct  68   ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPV  127

Query  61   IQIVY  65
            ++ +Y
Sbjct  128  LEALY  132


>sp|Q6CXW0|DBP8_KLULA ATP-dependent RNA helicase DBP8 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP8 PE=3 SV=1
Length=435

 Score = 94.7 bits (234),  Expect = 3e-19, Method: Compositional matrix adjust.
 Identities = 92/347 (27%), Positives = 152/347 (44%), Gaps = 58/347 (17%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P     +++ P+RELA Q     +QF  +     +R  +++GG +   Q   L+     +
Sbjct  70   PQGMFGIVLTPTRELAMQIA---EQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFI  126

Query  344  VGTPGRLDD-LVSTGKLN---LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
            + TPGRL   ++++G+     L +V+FLVLDEAD LL++ +S  +    + +P      K
Sbjct  127  IATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILP---PKNK  183

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
            R Q ++ +AT+    VK LS+                             P+T+      
Sbjct  184  R-QNLLFTATMTD-QVKALSDA----------------------------PQTE------  207

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA--IIFCRTKI  517
            GK  + T +V + DN          +    + +K  Y  + +   K  ++  IIF    +
Sbjct  208  GKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTV  267

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
              + L +           K        LH      ER  +++RF+    R LI TDVA+R
Sbjct  268  TAEILRRTL---------KSLDVRVTSLHSQMPQQERTNSVQRFRAQAARVLIATDVASR  318

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            G+DI  V  V+N  +P     ++HR GR  RA R G ++  V TEK+
Sbjct  319  GLDIPIVELVVNYDIPGNPDTFIHRAGRTARAGRHGESLCFV-TEKD  364


 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (57%), Gaps = 0/58 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
           F  +G    + +A+  M  + PT IQ   IP IL G D +  A TGSGKT AF+ P++
Sbjct  6   FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPML  63


>sp|Q9VVK8|DDX52_DROME Probable ATP-dependent RNA helicase DDX52 
OS=Drosophila melanogaster OX=7227 GN=ais PE=1 SV=1
Length=594

 Score = 95.9 bits (237),  Expect = 3e-19, Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 146/338 (43%), Gaps = 57/338 (17%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV-LENGVDIVVGT  346
            +AL++ P+RELA+Q      +  +      LR   I     A+ +     +   DI+V T
Sbjct  190  RALVLAPTRELAQQIYRECAELTRETG---LRTHFISKVSEAKQKHGAECKQRYDILVST  246

Query  347  PGRLDDLVSTGK--LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            P R+  L+      L+LS V + VLDEAD L+ +G ++F  ++ +     ++  K   V 
Sbjct  247  PNRVRFLLQQEPPLLDLSHVEWFVLDEADRLMEEGQNNFKEQLDDIYAACSNPTK--CVA  304

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
              SAT ++  V K + + +     + +  ++S  +TV   ++ V  +  +L         
Sbjct  305  FFSAT-YTVPVAKWALRHLKNLVRITIGVQNSATETVQQELLFVGSEGGKL---------  354

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                V  +D  R G   P                           ++F ++K     L +
Sbjct  355  ----VAIRDLVRQGLQPP--------------------------VLVFVQSKERAKQLFE  384

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
              +  G   D          +H +R  H+R   ++ F++G +  LICT++  RGID  GV
Sbjct  385  ELLYDGINVD---------VIHAERSQHQRDNCVKAFREGSIWVLICTELMGRGIDFKGV  435

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
              VIN   P    +Y+HRIGR GRA R G AI+    E
Sbjct  436  NLVINYDFPPTTISYIHRIGRTGRAGRPGRAITFFTQE  473


 Score = 42.0 bits (97),  Expect = 0.020, Method: Compositional matrix adjust.
 Identities = 19/53 (36%), Positives = 33/53 (62%), Gaps = 0/53 (0%)

Query  9    VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            ++P + Q +   ++  PT IQ +++P++L    ++  A TGSGKT AF  P+I
Sbjct  126  MLPRLQQNLLSRNFDHPTPIQMQALPVLLQRRALMACAPTGSGKTLAFLTPII  178


>sp|Q0D622|RH32_ORYSJ DEAD-box ATP-dependent RNA helicase 32 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os07g0517000 PE=2 
SV=2
Length=773

 Score = 96.3 bits (238),  Expect = 3e-19, Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 156/353 (44%), Gaps = 66/353 (19%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR  349
            +++ P+++LA Q  N    F+K           I+G     D+   + N ++I+V TPGR
Sbjct  156  IVLSPNKDLAGQIFN---VFQKVGKLHGFSAACIVGNRKGLDEEKAVINNMNILVCTPGR  212

Query  350  L-DDLVSTGKLNLSQVR-FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            L   +  T   + SQ++  LV+DEAD +L + + + ++ + +Q+P+V       Q ++ S
Sbjct  213  LLQHMGETTNFDCSQIQQILVIDEADQVLDKNFQEQVDNVVSQLPKVR------QTLLFS  266

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGE--DSVPDTV--HHVVVPVNPKTDRLWERLGKSH  463
            AT  +  VK L+   +  P ++ +  E   + PDT+  + ++VP+  K + LW       
Sbjct  267  AT-QTKSVKDLARVSLKDPEYISVHEEATTATPDTLEQYAMIVPLEQKLNMLWS------  319

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 IK H   + ++F  +      + 
Sbjct  320  ------------------------------------FIKRHLKSRILVFLSSVKQVKFVY  343

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
            + F +   G        S  C+HG  K   ++  +  FK+G    L  TD+ ARG+DI  
Sbjct  344  EVFKKLRPG-------ISLRCMHGRMKYEVQQAIVAEFKEGH-SVLFSTDIFARGLDIED  395

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGK  636
            V +V+ V  P+    Y+HR+GR  R  + G A+  +  E+EK+   + ++  K
Sbjct  396  VDWVVQVDCPENIALYIHRVGRTARYNKRGKALIFLCPEEEKMLEKLKAAESK  448


 Score = 47.0 bits (110),  Expect = 7e-04, Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 39/64 (61%), Gaps = 0/64 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            A F E+ +  +    + +  +   ++IQ  ++P  L G DVL AA+TGSGKT AF IPV+
Sbjct  80   ARFDELPLSNKTKDGLRKAGYTEMSEIQRAALPHALCGRDVLGAAKTGSGKTLAFVIPVL  139

Query  62   QIVY  65
            + +Y
Sbjct  140  EKLY  143


>sp|A3LSJ2|DBP6_PICST ATP-dependent RNA helicase DBP6 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DBP6 PE=3 SV=2
Length=591

 Score = 95.5 bits (236),  Expect = 4e-19, Method: Compositional matrix adjust.
 Identities = 91/366 (25%), Positives = 160/366 (44%), Gaps = 61/366 (17%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGV-------  340
            +A+++ P++ L  Q      Q  +  +         +  V+ R+ +S+ E G+       
Sbjct  235  RAIVLVPTKPLINQVKATFVQLSRGTN---------LSVVSLRNDVSIKEEGIKIVNSPP  285

Query  341  DIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD----FINRMHNQIPQVTS  396
            DI+V TPGRL + +S   +NL+ ++FLV+DEAD LL+Q + +     I+ +   +     
Sbjct  286  DIIVSTPGRLVEHISNKSINLNSLQFLVIDEADRLLNQSFQNWCQVLISSLEGDVNIAEE  345

Query  397  DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLW  456
                 Q ++ SATL + D  KLS      P  V +     + + + +V   ++  T +  
Sbjct  346  WKITPQKLIFSATLTT-DSGKLSALKFQKPRLVIVNDRKQLVNEIFNVPSSLSEYTIQFG  404

Query  457  ERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTK  516
                          AK + +P             ++  +Y    ++ +K+   +IF ++ 
Sbjct  405  T-------------AKASIKP-------------LILAKYL---LENNKLSNVLIFTKSN  435

Query  517  ID----CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICT  572
                  C  LE  F     G        + +    + K   R + L+ F    +  L+ T
Sbjct  436  EASIRLCKLLELMF-----GKLHPSMNIAYIN-STNNKSAIRTKILKDFSTQKINILVAT  489

Query  573  DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY-HVC  631
            D+ ARGIDI  +  VIN  LP+  + YVHR+GR  RA + G A +L   + E  W+  + 
Sbjct  490  DLIARGIDILSITDVINYDLPNSSREYVHRVGRTARANQTGHAYTLCFGKGEAKWFKKII  549

Query  632  SSRGKG  637
            S  G+G
Sbjct  550  SDVGRG  555


 Score = 38.9 bits (89),  Expect = 0.17, Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 11/73 (15%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG-----------GDVLMAAETGSGK  52
            FSE  + P + + +E  ++     +Q   + ++L             GD+L+ A TGSGK
Sbjct  155  FSEFEISPFLLKNLERDNFTTAFSVQIAIMDILLHDIKRNRLEPDVKGDILVNAATGSGK  214

Query  53   TGAFSIPVIQIVY  65
            T A+SIP+I+ ++
Sbjct  215  TLAYSIPIIEALH  227


>sp|Q93ZG7|RH38_ARATH DEAD-box ATP-dependent RNA helicase 38 OS=Arabidopsis 
thaliana OX=3702 GN=RH38 PE=1 SV=2
Length=496

 Score = 94.7 bits (234),  Expect = 5e-19, Method: Compositional matrix adjust.
 Identities = 101/408 (25%), Positives = 171/408 (42%), Gaps = 93/408 (23%)

Query  242  FGEEEFKFPPKDGFVALS---KAPDGYIVKSQHSGNAQVT------QTKFLPN--APKAL  290
            + E +F+ P K   ++L      P  +++   H+G+ + T       ++  P    P+AL
Sbjct  107  YVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQAL  166

Query  291  IVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII----GGVAARDQLSVLENGVDIVVGT  346
             + P+RELA Q +  +++  K+       EL +     G  AA     V      +V+GT
Sbjct  167  CICPTRELANQNMEVLQKMGKFTG--ITAELAVPDSTRGAPAATRGAPV---SAHVVIGT  221

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            PG L   ++  +L L+ ++ LV DEAD +L + G+ D   ++   I +V  +    QV++
Sbjct  222  PGTLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPN---FQVLL  278

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV--HHVVVPVNPKTDRLWERLGKSH  463
             SAT +   VK    + +  P  + +K ED   D+V  + VV P                
Sbjct  279  FSATFNE-TVKDFVARTVKDPNQLFVKREDLALDSVKQYKVVCP----------------  321

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD-----QAIIFCRTKID  518
                                         K +  +  IK+  M+     Q IIF +TK  
Sbjct  322  -----------------------------KEQNKIEVIKDQIMELGDIGQTIIFVKTKAS  352

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
               + +   + G         +    +HG+    +R + ++ FK+   + LI TDV ARG
Sbjct  353  AQKVHKALAEMG---------YDVTSVHGNLTESDRDKIVKEFKECLTQVLIATDVIARG  403

Query  579  IDIHGVPYVINVTLPDEKQN-------YVHRIGRVGRAERMGLAISLV  619
             D   V  V+N  LP + +        Y+HR+GR GR  R G   +L+
Sbjct  404  FDQQRVNLVVNYNLPTKYETGEPDYEVYLHRVGRAGRFGRKGAVFNLL  451


 Score = 37.4 bits (85),  Expect = 0.51, Method: Compositional matrix adjust.
 Identities = 23/72 (32%), Positives = 41/72 (57%), Gaps = 3/72 (4%)

Query  4    FSEMGVMPEIAQAVE-EMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSIPV  60
            F ++ + PE+ + +  EM +  P+ IQA S+P+I+      ++  A  GSGKT  F + +
Sbjct  93   FEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGM  152

Query  61   IQIVYETLKDQQ  72
            +  V  TL++ Q
Sbjct  153  LSRVDPTLREPQ  164


>sp|A3LX02|SPB4_PICST ATP-dependent rRNA helicase SPB4 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=SPB4 PE=3 SV=2
Length=617

 Score = 95.1 bits (235),  Expect = 6e-19, Method: Compositional matrix adjust.
 Identities = 91/367 (25%), Positives = 157/367 (43%), Gaps = 71/367 (19%)

Query  269  SQHSGNA--QVTQTKFLPNAPKALIVEPSRELAEQ---TLNNIKQFKKYIDNPKLRELLI  323
            SQ  G A  +V Q   L     A+++ P+RELA Q     NN+ ++      P   +LL+
Sbjct  79   SQEEGEAPEKVKQGHML-----AIVLSPTRELASQIQSVFNNVIEYLPEDKIPIKTQLLV  133

Query  324  IGGVAARDQLS-VLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD  382
                  RD L   L++   I++ TPGR+ D +S+  + ++ V   +LDEAD LL   +  
Sbjct  134  GSLSTVRDDLDRFLKDKPHILIATPGRMLDFMSSQYVKMNSVEIAILDEADKLLDFSFEK  193

Query  383  FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE----DSVP  438
             +  +  ++P+    G      + SAT+ +     +    M+ P  V +K +    +S P
Sbjct  194  DVVNILKRLPKQRRTG------LFSATISAAG-NTIFRAGMNNPVKVAVKSKSTTANSAP  246

Query  439  DTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAV  498
              +H   + + P+                                         K    +
Sbjct  247  SALHISYLMIEPEK----------------------------------------KITTLI  266

Query  499  RAIKEHKMDQAIIFCRTKIDCDNLEQYF--IQQGGGPDKKGHQFSCVCLHGDRKPHERKQ  556
            + + +++  + I++  T   C +++ ++   Q+    +     F    LHG      R +
Sbjct  267  KLLHDYRYKKCIVYFPT---CTSVKHFYSIFQKIVNGNDNTESFKFYSLHGQLATKPRLR  323

Query  557  NLERFKKGDV----RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM  612
             L+ F  GDV      L+ TDVAARGIDI  V  VI +  P +   ++HR GR GRA ++
Sbjct  324  TLQSFTDGDVALNKHILMTTDVAARGIDIPDVDLVIQLDPPTDPDVFLHRCGRTGRANKV  383

Query  613  GLAISLV  619
            G AI ++
Sbjct  384  GRAIVML  390


 Score = 60.1 bits (144),  Expect = 5e-08, Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 46/76 (61%), Gaps = 0/76 (0%)

Query  9   VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETL  68
           + P I +A+  + +   T +QA +IPL+ G  DV++ A TGSGKT AF+IPV+Q V   L
Sbjct  17  LQPWIKEAIASLGFPTMTPVQAATIPLLSGNKDVVVEAVTGSGKTLAFAIPVLQKVSNRL  76

Query  69  KDQQEGKKGKTTIKTG  84
            D QE  +    +K G
Sbjct  77  YDSQEEGEAPEKVKQG  92


>sp|A5D7C1|DDX52_BOVIN Probable ATP-dependent RNA helicase DDX52 
OS=Bos taurus OX=9913 GN=DDX52 PE=2 SV=1
Length=596

 Score = 94.7 bits (234),  Expect = 6e-19, Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 150/355 (42%), Gaps = 58/355 (16%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLI-IGGVAARDQLSVLENGVDIVVGT  346
            +ALI+ P+RELA Q     ++  K  +    R  +I    VAA+          DI+V T
Sbjct  234  RALIISPTRELASQIH---RELVKLSEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTT  290

Query  347  PGRLDDLVSTGK--LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            P RL  L+      ++L+ V +LV+DE+D L   G + F +++ +     TS   +++  
Sbjct  291  PNRLIYLLKQDPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLASIFLACTS--HKVKRA  348

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT  ++DV++     +     V +   +S  +TV   ++ V  +T +L         
Sbjct  349  MFSATF-AYDVEQWCRLNLDSVITVSVGARNSAVETVEQELLFVGSETGKL---------  398

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                +  ++  + G N P                           ++F ++      L  
Sbjct  399  ----LAMRELVKKGFNPP--------------------------VLVFVQSIERAKELFH  428

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
              I +G   D          +H DR   +R   +  F+ G +  LICT + ARGID  GV
Sbjct  429  ELIYEGINVD---------VIHADRTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGV  479

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS-RGKGC  638
              VIN   P     Y+HRIGR GRA   G A++    + + +   V +  +  GC
Sbjct  480  NLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFTEDDKPLLRSVANVIQQAGC  534


 Score = 49.7 bits (117),  Expect = 9e-05, Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 0/56 (0%)

Query  6    EMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            E  +   + Q + +  +  PT IQ ++IP++L G ++L +A TGSGKT AFSIP++
Sbjct  167  EYKINSRLLQNILDAGFQTPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPIL  222


>sp|Q6FU81|MS116_CANGA ATP-dependent RNA helicase MSS116, mitochondrial 
OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 
/ JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=MSS116 
PE=3 SV=1
Length=666

 Score = 95.1 bits (235),  Expect = 7e-19, Method: Compositional matrix adjust.
 Identities = 97/366 (27%), Positives = 161/366 (44%), Gaps = 64/366 (17%)

Query  270  QHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRE---LLIIGG  326
            QH  N ++       N  K++IV P+R+LA Q  + ++  K +  N KL+    + ++GG
Sbjct  221  QHLLNTKIDSQ----NKVKSVIVAPTRDLALQIEDEVR--KIHSKNRKLKAFECVSLVGG  274

Query  327  VAARDQLSVLEN-GVDIVVGTPGRLDDLVST-GKLNLSQVRFLVLDEADGLLSQGYSD--  382
                  +  +E     IV+GTPGRL D++   G      V F VLDEAD LL  G+ +  
Sbjct  275  TNFDRSIRYIEKVSPSIVIGTPGRLIDVMEKFGNKFFKDVDFKVLDEADRLLEIGFKEDL  334

Query  383  -FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFP--TWVDL--KGEDSV  437
             +IN+M N +   T+  + ++ ++ SATL    V+ LS  IM+     ++D   + E   
Sbjct  335  SYINKMLNTLN--TNSTEHIRTLLFSATL-DHKVQSLSNDIMNKEECLYIDTIDENEPQA  391

Query  438  PDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYA  497
             + +   +V      D L+  +   HIR            G  +P               
Sbjct  392  HEKIDQTLVVGETFADNLYAAI--EHIR----------EFGTKTPNY-------------  426

Query  498  VRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQN  557
                      ++I+F  T          F +      K+  +      HG     +R + 
Sbjct  427  ----------KSILFLPT--------VKFTKFMATILKRQVKLPIYEFHGQIDQKKRTRI  468

Query  558  LERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAIS  617
            +  FK      L+CTDV ARG+D   +  V+ + LP E  NY+HRIGR  R+ + G +++
Sbjct  469  VNEFKTMKKGLLVCTDVGARGMDFPNITEVLQIGLPSEIPNYIHRIGRTARSGKEGSSVT  528

Query  618  LVATEK  623
             ++ E+
Sbjct  529  FISKEE  534


 Score = 36.6 bits (83),  Expect = 0.90, Method: Compositional matrix adjust.
 Identities = 21/68 (31%), Positives = 37/68 (54%), Gaps = 2/68 (3%)

Query  12   EIAQAVEEMDWLLPTDIQAESI-PLILGG-GDVLMAAETGSGKTGAFSIPVIQIVYETLK  69
            ++  ++  M +   T +Q ++I P+I     D++  A+TG+GKT AF +P+ Q +  T  
Sbjct  169  DLYDSISRMGFEQLTPVQQKTIEPIITNSDSDIIARAKTGTGKTFAFLLPIFQHLLNTKI  228

Query  70   DQQEGKKG  77
            D Q   K 
Sbjct  229  DSQNKVKS  236


>sp|Q8JHJ2|DDX55_DANRE ATP-dependent RNA helicase DDX55 OS=Danio 
rerio OX=7955 GN=ddx55 PE=2 SV=2
Length=593

 Score = 94.7 bits (234),  Expect = 7e-19, Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 151/343 (44%), Gaps = 57/343 (17%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN-GVDIVVGTP  347
            ALI+ P+RELA Q    + +F +    P+  ++L+IGG    + +  L+  G +I++ TP
Sbjct  85   ALIITPTRELAMQISEVMGRFLQGF--PQFTQILLIGGSNPIEDVEKLKTQGANIIIATP  142

Query  348  GRLDDLVSTGK--LNLS----QVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL  401
            GRL+D+       L+L+     +  LVLDEAD LL  G+   +N +   +P+    G   
Sbjct  143  GRLEDMFRRKADGLDLATAVKSLDVLVLDEADRLLDMGFEASLNTILGYLPKQRRTG---  199

Query  402  QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK  461
               + SAT  + +++KL    +  P  + +K +     +V      ++            
Sbjct  200  ---LFSAT-QTQELEKLVRAGLRNPVRITVKEKGVAASSVQKTPAKLS------------  243

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
                        N      + E ++  +  L+         +HK ++ ++F  T   C  
Sbjct  244  ------------NYYTMCRAEEKFNTLVAFLR---------QHKHEKQLVFFST---CAC  279

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            +E YF   G   +      S  C+HG  K H+R +    F+      L+CTDV ARGIDI
Sbjct  280  VE-YF---GKALEVLVKNVSIHCIHGKMK-HKRNKIFADFRALKSGILVCTDVMARGIDI  334

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
              V +V+    P    ++VHR GR  R    G A+  +   +E
Sbjct  335  PEVNWVLQYDPPSSASSFVHRCGRTARIGNQGNALVFLLPMEE  377


 Score = 48.1 bits (113),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 27/65 (42%), Positives = 37/65 (57%), Gaps = 3/65 (5%)

Query  13  IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVY---ETLK  69
           I Q ++E+ +   T +Q+  IPL +   DV   A TGSGKT AF IP ++I+    E LK
Sbjct  20  ILQTLKELGFTYMTPVQSACIPLFMSNKDVAAEAVTGSGKTLAFVIPALEILLKREEKLK  79

Query  70  DQQEG  74
             Q G
Sbjct  80  KMQVG  84


>sp|O61305|DDX19_DROME DEAD-box helicase Dbp80 OS=Drosophila melanogaster 
OX=7227 GN=Dbp80 PE=1 SV=1
Length=460

 Score = 93.6 bits (231),  Expect = 8e-19, Method: Compositional matrix adjust.
 Identities = 106/391 (27%), Positives = 167/391 (43%), Gaps = 80/391 (20%)

Query  258  LSKAPDGYIVKSQHSGN--------AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQF  309
            L+  P   I +SQ SG         A +++     N P+ L + P+ ELA QT     + 
Sbjct  108  LADPPQNMIAQSQ-SGTGKTAAFVLAMLSRVNVCLNHPQVLCLSPTYELAIQTGEVAARM  166

Query  310  KKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKL-NLSQVRFLV  368
             ++    KLR    + G        + E+   I++GTPG+L D     +L ++ ++   V
Sbjct  167  GQFCREIKLR--FAVRGEEVDRSKKIEEH---ILIGTPGKLLDWGIKFRLFDMKKISVFV  221

Query  369  LDEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPT  427
            LDEAD ++ +QG+ D   R+H  +          Q++  SAT +  +V   +  I+  PT
Sbjct  222  LDEADVMIATQGHHDQCIRIHKML------NPHCQMLFFSAT-YGKEVMDFARLIVADPT  274

Query  428  WVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSE  487
             + L  E+                     E + + +++  +   K N             
Sbjct  275  IIRLMREEES------------------LENIKQYYVKCKNEEGKYN-------------  303

Query  488  AIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHG  547
            AI+ + G  +V         QAIIFC TK     L       G          S   L G
Sbjct  304  AIQNIYGCISV--------GQAIIFCHTKRTAAWLAAKMTSDG---------HSVAVLTG  346

Query  548  DRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP------DEKQNYVH  601
            D    +R   L+RF+ G  + LI T++ +RGIDI  +  V+N  LP       + + Y+H
Sbjct  347  DLTVVQRLDVLDRFRSGLEKVLITTNILSRGIDIEQLQVVVNFDLPVDLDGMADCETYLH  406

Query  602  RIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
            RIGR GR  + G+AI+L+  EK      VCS
Sbjct  407  RIGRTGRFGKSGIAINLITDEKT---MKVCS  434


>sp|A5DTK7|MS116_LODEL ATP-dependent RNA helicase MSS116, mitochondrial 
OS=Lodderomyces elongisporus (strain ATCC 11503 / 
CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=MSS116 
PE=3 SV=1
Length=692

 Score = 94.7 bits (234),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 102/402 (25%), Positives = 176/402 (44%), Gaps = 63/402 (16%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLREL-LIIGGVAARDQLSVLENGVDIVVGTP  347
             +I+ P+R+LA Q  +  ++  + I   +   +  +IGG+  ++  +   N  +IV+ TP
Sbjct  209  TVIIVPTRDLALQIYDEYQKVLRGISGSRKPHISYVIGGM--KNSFNP-RNPSEIVIATP  265

Query  348  GRLD-DLVSTGKLN-LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD-GKRLQVI  404
            GRL+ DL S    +  + +++ V DEAD LL  G+   ++ +   I  + SD  + L+ +
Sbjct  266  GRLEADLRSPLFASAFTDIKYRVYDEADRLLDVGFEPTLDSIDRSIKMIRSDDAEPLKSL  325

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDS--VPDTVHHVVVPVNPKTDRLWERLGKS  462
            + SAT+ +   +   + I     +++   ED   V + +H V+       D+        
Sbjct  326  LFSATVDARLDQFAKQHINKKYDYINTVPEDDPEVHENIHQVMYKCKDAIDKFGSFFNYV  385

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
            +    D            SP+M                       + ++F  T+   + L
Sbjct  386  NQLVKD------------SPDM-----------------------KMMVFLPTQTAVEFL  410

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
              Y  +      K         LHG R   +R++ L  FK+ D   LI TDVAARGID+ 
Sbjct  411  YSYMSE---ACHKHDVDIDIFHLHGKRSASQRQRALSNFKRDDSGILITTDVAARGIDVK  467

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTR  642
            GV +V+ +    E  +YVH++GR GRA + G A+ L  T+ E              Y  R
Sbjct  468  GVTHVVQLFPSSEIADYVHKVGRTGRAGKEGKAV-LFITQPEM------------AYVRR  514

Query  643  LKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEF  684
            L  + G T  + ++   SEI+  ++     + PD +V  D F
Sbjct  515  LNSERGVT--FEQVHESSEIDNSIDF-FEGMRPDEQVANDFF  553


>sp|Q9Y2R4|DDX52_HUMAN Probable ATP-dependent RNA helicase DDX52 
OS=Homo sapiens OX=9606 GN=DDX52 PE=1 SV=4
Length=599

 Score = 94.4 bits (233),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 148/348 (43%), Gaps = 57/348 (16%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLI-IGGVAARDQLSVLENGVDIVVGT  346
            +ALI+ P+RELA Q     ++  K  +    R  +I    VAA+          DI+V T
Sbjct  236  RALIISPTRELASQIH---RELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTT  292

Query  347  PGRLDDLVSTGK--LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            P RL  L+      ++L+ V +LV+DE+D L   G + F +++ +     TS   +++  
Sbjct  293  PNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSH--KVRRA  350

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT  ++DV++  +  +     V +   +S  +TV   ++ V  +T +L         
Sbjct  351  MFSATF-AYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLFVGSETGKL---------  400

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                +  ++  + G N P                           ++F ++      L  
Sbjct  401  ----LAVRELVKKGFNPP--------------------------VLVFVQSIERAKELFH  430

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
              I +G   D          +H +R   +R   +  F+ G +  LICT + ARGID  GV
Sbjct  431  ELIYEGINVD---------VIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGV  481

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
              VIN   P     Y+HRIGR GRA   G AI+    + + +   V +
Sbjct  482  NLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTEDDKPLLRSVAN  529


 Score = 51.2 bits (121),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 38/56 (68%), Gaps = 0/56 (0%)

Query  6    EMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            E  +   + Q + +  + +PT IQ ++IP++L G ++L +A TGSGKT AFSIP++
Sbjct  169  EYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPIL  224


>sp|A7TJ71|DBP4_VANPO ATP-dependent RNA helicase DBP4 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=DBP4 PE=3 SV=1
Length=768

 Score = 94.7 bits (234),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 156/347 (45%), Gaps = 49/347 (14%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            ALI+ P+RELA Q    +    K   +      L+IGG   + ++  + + ++I++GTPG
Sbjct  116  ALIISPTRELAMQIYEVLL---KIGTSTSFSAGLVIGGKDVKFEMERI-SKINILIGTPG  171

Query  349  R-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            R L  +     LN S ++ LVLDEAD  L  G+   ++ + + +P         Q ++ S
Sbjct  172  RILQHMDQAIGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSNLPPTR------QTLLFS  225

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT  S  ++ L+   +    +  +   D +  +   V+ P  P+T      L +S+I   
Sbjct  226  AT-QSQSLEDLAR--LSLTDYKTIGNPDILNPSNGKVLGPSTPET------LQQSYI---  273

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
            +V   D                   K +     IK H   + I+F  +      + + F 
Sbjct  274  NVELPD-------------------KLDMLYSFIKSHLKSKMIVFLSSSKQVHFVYETFR  314

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
            +   G        S + LHG +K   R + L++F +     L  TDV ARGID   + +V
Sbjct  315  KMQPG-------ISLMHLHGRQKQKARTETLDKFNRAQHVCLFATDVVARGIDFPAIDWV  367

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            + V  P++   Y+HR+GR  R  + G ++ ++  ++E+ +    +SR
Sbjct  368  VQVDCPEDVDTYIHRVGRCARYGKQGKSMIMLTPQEEEGFLKRLASR  414


 Score = 54.3 bits (129),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 27/62 (44%), Positives = 41/62 (66%), Gaps = 0/62 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F ++ +     + + +  +L  TDIQ +SIP+ L G D+L AA+TGSGKT AF IPV++ 
Sbjct  43   FKDLPISNSTLKGLNDSAFLKLTDIQRDSIPMSLKGYDILGAAKTGSGKTLAFLIPVLEK  102

Query  64   VY  65
            +Y
Sbjct  103  LY  104


>sp|Q9VHU1|DDX55_DROME Probable ATP-dependent RNA helicase DDX55 
homolog OS=Drosophila melanogaster OX=7227 GN=CG9630 PE=2 
SV=1
Length=613

 Score = 94.0 bits (232),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 150/348 (43%), Gaps = 64/348 (18%)

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            +T + P    AL++ P+RELA Q    + QF ++ D   L + LI+GG +  + ++ L  
Sbjct  75   ETPWGPKEIGALVISPTRELARQISEVLAQFLEHEDLEHLNQQLIVGGNSIEEDIATLRR  134

Query  339  GVD-IVVGTPGRLDDLVST--GKLNL-SQVR---FLVLDEADGLLSQGYSDFINRMHNQI  391
                I+V TPGRL+DL       LNL +QV+   FLVLDEAD LL  G+   +N +   +
Sbjct  135  ETPCILVCTPGRLEDLFQRKGDDLNLAAQVKSLEFLVLDEADRLLDLGFKTSVNNILGYL  194

Query  392  PQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPK  451
            P+    G      + SAT  + +V  L    +  P  V +K + SV              
Sbjct  195  PRQRRTG------LFSAT-QTTEVTDLIRAGLRNPVLVSVKEKASV--------------  233

Query  452  TDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAII  511
                                        N+P       +I++ E    A+ E     A +
Sbjct  234  ----------------------------NTPARLQNFYRIVEPELKFVALLEFLSSPATV  265

Query  512  FCRTKI---DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
              +  +    C  +E +         K+    + + +HG  K ++R   +E+F+      
Sbjct  266  IGKVMVFFPTCACVEYWAEALPPLLPKR----TVLGIHGKMK-NKRANVVEKFRNTPQAV  320

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAI  616
            L+CTDV ARG+D+  + +V+    P    ++VHR+GR  R    G A+
Sbjct  321  LLCTDVLARGLDVPEIEWVVQWDPPSTASSFVHRVGRTARQGNEGNAL  368


 Score = 43.9 bits (102),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 24/64 (38%), Positives = 36/64 (56%), Gaps = 0/64 (0%)

Query  13  IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQ  72
           + Q V+   +   T +Q  +IPL+L   DV   A TGSGKT AF +P+++I+    K+  
Sbjct  18  VLQVVQSFGFQQMTPVQTAAIPLLLARKDVSAEAVTGSGKTLAFLVPMLEILQRRHKETP  77

Query  73  EGKK  76
            G K
Sbjct  78  WGPK  81


>sp|A5DLF4|DBP4_PICGU ATP-dependent RNA helicase DBP4 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP4 PE=3 
SV=2
Length=754

 Score = 94.4 bits (233),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 92/343 (27%), Positives = 153/343 (45%), Gaps = 66/343 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            ALIV P+RELA QT   + +  KY         L+ GG   + +   + + ++I++GTPG
Sbjct  121  ALIVSPTRELAVQTFEVLTKIGKY---NSFSAGLVTGGKDVKYEKERI-SRMNILIGTPG  176

Query  349  RLDD-LVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            R+   L     +  S ++ LVLDEAD  L  G+   I+ +   +P VT      Q ++ S
Sbjct  177  RISQHLNEAVGMETSNLQVLVLDEADRCLDMGFRKQIDNILGHLP-VTR-----QTLLFS  230

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGE---DSVPDTV--HHVVVPVNPKTDRLWERLGKS  462
            AT  S +VK L+   +  P  V +  +    S+P+++  +++ + +  K D LW  L KS
Sbjct  231  AT-QSDNVKDLARLSLVNPKRVGVSSDQEVSSIPESLEQYYIKISLASKMDVLWSFL-KS  288

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
            H+++                       KIL                 + F  +K      
Sbjct  289  HLKS-----------------------KIL-----------------VFFSSSKQVQFAY  308

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
            E +   Q G         S + L+G  K   R +   +F +     L  TD+ ARG+D  
Sbjct  309  EAFRRLQPG--------ISLLKLYGRHKQTSRLETTMKFSRAQHACLFATDIVARGLDFP  360

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
             + +V+ V  P++   YVHR+GR  R  R G ++ ++A  +E+
Sbjct  361  AIDWVVQVDCPEDAATYVHRVGRAARFGRQGKSLLMLAPSEEE  403


 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 0/44 (0%)

Query  19   EMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            E +++  TDIQ ++IP+ L   DV+  A TGSGKT AF +PVI+
Sbjct  63   ENNFVSLTDIQKKAIPVALKSEDVMGTARTGSGKTLAFLVPVIE  106


>sp|Q9CWT6|DDX28_MOUSE Probable ATP-dependent RNA helicase DDX28 
OS=Mus musculus OX=10090 GN=Ddx28 PE=2 SV=2
Length=540

 Score = 93.6 bits (231),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 157/354 (44%), Gaps = 71/354 (20%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA-ARDQLSVLEN-GVDI  342
             AP+ L++ PSRELAEQ     +    Y+    L+ + + GG+  +R +L +      D+
Sbjct  202  TAPRGLVLVPSRELAEQVQAVAQSLGGYLG---LQVIELGGGLGMSRLKLQLYRRPAADV  258

Query  343  VVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK---  399
            +V TPG L   + +  ++L  + F+VLDE D LL + + + ++ +  + P   S  +   
Sbjct  259  LVATPGALWKALKSQLISLQHLNFIVLDEVDTLLDESFLELVDYILEKSPIAESPAELED  318

Query  400  ----RLQVIVCSATLHSFDVKKLSEKIMHFPTWVD-LKGEDSVPDTVH-------HVVVP  447
                + Q+++  AT               FP  ++ L  + + PD++        H ++P
Sbjct  319  PFNPKAQLVLVGAT---------------FPEGLNQLLSKVTSPDSLTTITSSKLHCLMP  363

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
                           H+R   +  K     GA+     +E ++ILK +   +A K     
Sbjct  364  ---------------HVRQTFMRLK-----GADK---VTELVQILKQQD--KASKTEPSG  398

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
              ++FC +    + L  Y +          H+   + L G      R    + F+KG   
Sbjct  399  TVLVFCNSASTVNWLG-YILDD--------HKIQHLRLQGQMPASMRAGIFQSFQKGSQN  449

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR--AERMGLAISLV  619
             L+CTD+A+RG+D   V  VIN   P   Q+Y+HR GRVGR  +E  G  IS V
Sbjct  450  ILVCTDIASRGLDSVHVEVVINYDFPPTLQDYIHRAGRVGRVGSEVPGSVISFV  503


 Score = 49.7 bits (117),  Expect = 9e-05, Method: Compositional matrix adjust.
 Identities = 24/62 (39%), Positives = 43/62 (69%), Gaps = 2/62 (3%)

Query  3    AFSEMGVMPEIAQAVEEM--DWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +F ++G+ P +  A++E   + + PT +Q+++IP +L G  +L AAETGSGKT ++ +P+
Sbjct  127  SFVDLGLEPRVLLALQEAVPEVVQPTSVQSKTIPPLLRGRHLLCAAETGSGKTLSYLLPL  186

Query  61   IQ  62
             Q
Sbjct  187  FQ  188


>sp|Q6CDN5|DBP6_YARLI ATP-dependent RNA helicase DBP6 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP6 PE=3 
SV=1
Length=607

 Score = 93.6 bits (231),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 99/396 (25%), Positives = 166/396 (42%), Gaps = 73/396 (18%)

Query  255  FVALSKAPDGYIVKSQHSGNA--------QVTQTKFLPNAPKALIVEPSRELAEQTLNNI  306
             +A  + PD  +  S  SG          +  + + +P   +A++V P++ L  Q  + +
Sbjct  228  LLAPDRKPDLLVSASTGSGKTATYGIPIIEKLRDRIVPRI-RAVVVLPTKPLVMQVRDVL  286

Query  307  KQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRF  366
            +   K      L  + +    + + + +VLE   DIVV  PGRL + V       S + F
Sbjct  287  ENLSK---GSSLSVVALRNDRSTKRERAVLETA-DIVVAAPGRLVEQVKENPELFSYIEF  342

Query  367  LVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK---------RLQVIVCSATLHSFDVKK  417
            LV+DEAD LL Q Y D+ + + N   Q    GK          +Q ++ SATL + + + 
Sbjct  343  LVVDEADRLLGQDYYDWASVLQNN-QQRAQAGKTNLTEHYVRNMQTLIFSATLTA-NPEH  400

Query  418  LSEKIMHFPTWVDLKGEDS--VPDTVHHVVVPVNP--KTDRLWERLGKSHIRTDDVHAKD  473
            ++   +H P    +   DS  +P ++  +V  V+   K   L E L +  I    V  K 
Sbjct  401  IASMDIHNPGVFVIGSSDSYSIPKSLTEIVTHVSAAEKPLMLCELLVQRDINRGVVFTKS  460

Query  474  NTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGP  533
            +                    E A R  +  ++  A IF +                   
Sbjct  461  S--------------------ETAARVARMMEIMDADIFHK-------------------  481

Query  534  DKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP  593
                  +    +  +     R++++++F  G + FL+CTD+ +RGID   V  VIN  +P
Sbjct  482  -----DWKIAAVSAETSSVHRRRSMKQFIDGKIDFLVCTDLVSRGIDF-VVDNVINYDIP  535

Query  594  DEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
              K+ YVHR+GR  RA R G A + +    E  W+ 
Sbjct  536  SGKREYVHRVGRTARAGREGNAYTFLTGSGEAKWFR  571


 Score = 34.3 bits (77),  Expect = 5.3, Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 39/80 (49%), Gaps = 13/80 (16%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGG---------DVLMAAETGSG  51
            + +F E  +   + + ++ + +     +Q   IP +L            D+L++A TGSG
Sbjct  187  VGSFDEFDLSKNMMKNLDTLGYTKAFSVQKAVIPWLLAQQKLLAPDRKPDLLVSASTGSG  246

Query  52   KTGAFSIPVIQIVYETLKDQ  71
            KT  + IP+I    E L+D+
Sbjct  247  KTATYGIPII----EKLRDR  262


>sp|P75172|Y623_MYCPN Probable ATP-dependent RNA helicase MG425 
homolog OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129 
/ Subtype 1) OX=272634 GN=MPN_623 PE=3 SV=1
Length=450

 Score = 92.4 bits (228),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 143/343 (42%), Gaps = 59/343 (17%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + L+V P+RELAEQ       F K+     L+ + +IGG+    QL  LEN  +IVVGT 
Sbjct  75   QTLVVAPTRELAEQIKTTFINFAKHTH---LKVVSLIGGIPIWQQLKQLENQPEIVVGTM  131

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR+ DL+  G +    +  L++DE D +L +G+   +  + ++I +        Q+ V S
Sbjct  132  GRVMDLLERGVIKFEHLEHLIIDEVDLMLDRGFKRKLFDLLSRIEKFE------QIAVYS  185

Query  408  ATLH--SFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
            A+ +  + +  K   K   F    +LK     PD         N   D+    L  +   
Sbjct  186  ASYNEETIETAKQITKNGIFLAAPELKQNAPEPD---------NKLIDQFVCYLFSNR--  234

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                                       K +     + + +    I+FC TK   D L  +
Sbjct  235  ---------------------------KKQALYSLVSQTRAKSIIVFCDTKKLVDELCIF  267

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF-LICTDVAARGIDIHGV  584
                      + +      LHGD+    R++NL+ F        L+ TD+  RGI + GV
Sbjct  268  L---------RKNDVKTYPLHGDKAQFIRERNLKLFANTTAPIVLVTTDLIGRGIHVEGV  318

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
              V+N +     + Y+HR+GR GR    G  I+   + +++ +
Sbjct  319  DMVVNYSACVNFETYLHRMGRTGRNNHKGSCITFCTSHEKQAF  361


 Score = 48.9 bits (115),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 22/65 (34%), Positives = 40/65 (62%), Gaps = 0/65 (0%)

Query  2   AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
           + F+E+GV P +   +++ +   PT IQ  +IP  L   ++++ + TG+GKT  F IPVI
Sbjct  3   STFNELGVSPALIATLKDNNINQPTTIQQLAIPQFLQHQNLIVHSPTGTGKTAVFGIPVI  62

Query  62  QIVYE  66
           + + +
Sbjct  63  ETLLK  67


>sp|A5DID7|HAS1_PICGU ATP-dependent RNA helicase HAS1 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=HAS1 PE=3 
SV=2
Length=569

 Score = 93.2 bits (230),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 88/330 (27%), Positives = 146/330 (44%), Gaps = 57/330 (17%)

Query  281  KFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
            KF P N    ++V P+RELA Q     +    +         ++IGG   R +   L  G
Sbjct  171  KFKPRNGTGVIVVSPTRELALQIFGVARDLMAHHSQTLG---IVIGGANRRQEADKLMKG  227

Query  340  VDIVVGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
            V++++ TPGRL D L +T       ++ LV+DEAD +L  G+ D + ++   +P   SD 
Sbjct  228  VNLLIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMKQIIKVLP---SDE  284

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER  458
            ++  +   + T    D+ ++S  +   P ++++     VP+T                  
Sbjct  285  RQSMLFSATQTTKVEDLARIS--LRAGPLYINV-----VPET------------------  319

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
                     +V   D    G  + +  S+   +L   +  R IK+    + I+F  +   
Sbjct  320  ---------EVSTADGLEQGYVTCD--SDMRFLLLFSFLRRNIKK----KIIVFLSS---  361

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
            C N  +YF +     D        + LHG +K  +R      F       LICTDVAARG
Sbjct  362  C-NCVKYFGELLNYID-----LPVLDLHGKQKQQKRTNTFFEFCNAKQGILICTDVAARG  415

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
            +DI  V ++I    PD+ ++Y+HR+GR  R
Sbjct  416  LDIPAVDWIIQFDPPDDPRDYIHRVGRTAR  445


 Score = 57.0 bits (136),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 27/62 (44%), Positives = 43/62 (69%), Gaps = 0/62 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F ++G+     +A+++M +   T +Q ++IP +L G DVL AA+TGSGKT AF IP I++
Sbjct  107  FEDLGLSEPTMRAIKDMGFEKMTKVQEKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEM  166

Query  64   VY  65
            +Y
Sbjct  167  LY  168


>sp|Q6BZR4|DBP9_YARLI ATP-dependent RNA helicase DBP9 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP9 PE=3 
SV=1
Length=544

 Score = 93.2 bits (230),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 96/357 (27%), Positives = 146/357 (41%), Gaps = 84/357 (24%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            ALIV P+REL EQ    I +  ++   P L+ L +   +      S+LE    I+VGTP 
Sbjct  85   ALIVVPTRELCEQVSKVITKLTQFC--PHLKSLNVTQQLGDDVISSLLEEKPSIIVGTPS  142

Query  349  RLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSA  408
            RL  L    +++ S+V +LV+DEAD LLS GY + +  +   +P+           + SA
Sbjct  143  RL--LKYAKEMDCSKVGYLVIDEADLLLSYGYKEDLIELSEMLPKTK------HTFIMSA  194

Query  409  TLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDD  468
            TL                                      N ++D + ++  +S + +  
Sbjct  195  TL--------------------------------------NKESDLMKQQFCRSTVASVA  216

Query  469  VHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQ  528
            V A +  R         SE  K L   Y +  ++  K  + I+F      C  L + F++
Sbjct  217  VTAAEEERKLLQYYVKCSERDKFLLA-YVMFKLQLVK-GKTIVFVNEIDRCYRL-RLFLE  273

Query  529  QGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA-------------  575
            Q G         +CV L+ +     R   +E+F KG    LICTD A             
Sbjct  274  QFGIK-------ACV-LNSELPIASRLHIVEQFNKGVFNLLICTDEANKLAEASKSASKQ  325

Query  576  ------------ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
                         RG+D   V +V+N  LP   + YVHR+GR  RA + G A+S V 
Sbjct  326  TKEVSRAHEYSSTRGLDFMNVAFVLNFDLPLSSRAYVHRVGRTARANKAGTALSFVV  382


 Score = 42.7 bits (99),  Expect = 0.011, Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGG-DVLMAAETGSGKTGAFSIPVI  61
           +F   G+   +   +   D   PT IQ  +IPL L  G D+   A TGSGKT A+ +P+ 
Sbjct  10  SFDSFGLDDRLLSGLAACDMKQPTLIQNTTIPLALDKGVDITAKAVTGSGKTVAYLLPIF  69

Query  62  QIVYETLKDQQEGKKGKTTIKT  83
           +++    K++++ +     + T
Sbjct  70  ELMLRAEKEKRDIQTALIVVPT  91


>sp|A4R8B5|HAS1_PYRO7 ATP-dependent RNA helicase HAS1 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=HAS1 PE=3 SV=2
Length=587

 Score = 93.2 bits (230),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 85/331 (26%), Positives = 137/331 (41%), Gaps = 61/331 (18%)

Query  281  KFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
            KF P N    ++V P+RELA Q     +   K+         ++IGG   R +   L  G
Sbjct  178  KFKPRNGTGVIVVSPTRELALQIFGVARDLMKHHSQTYG---IVIGGANRRAEAEKLSKG  234

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
            V++++ TPGRL D +         +R LV+DEAD +L  G+ D +     QI ++    +
Sbjct  235  VNLLIATPGRLLDHLQNTPFVFKNLRSLVIDEADRILEIGFEDEMR----QIIKILPKER  290

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH--HVVVPVNPKTDRLWE  457
            +  +   + T    D+ ++S +       VD + E S  + +   +VV   + +   L+ 
Sbjct  291  QSMLFSATQTTKVEDLARVSLRPGPLYLNVDEEKEYSTVEGLEQGYVVCEADKRFILLFS  350

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
             L K   +   V          NS + ++E +                           I
Sbjct  351  FLQKMKKKKIIVFFS-----SCNSVKYYAELLNY-------------------------I  380

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
            DC  L+                     LHG +K  +R      F   D   LICTDVAAR
Sbjct  381  DCQVLD---------------------LHGKQKQQKRTNTFFEFCNADRGTLICTDVAAR  419

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
            G+DI  V +++    PD+ ++Y+HR+GR  R
Sbjct  420  GLDIPAVDWIVQFDPPDDPRDYIHRVGRTAR  450


 Score = 60.8 bits (146),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 42/62 (68%), Gaps = 0/62 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            AFSE+ +     +A+EEM +   T+IQ   IP +L G DVL AA+TGSGKT AF IP ++
Sbjct  113  AFSELNLSENTMKAIEEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAVE  172

Query  63   IV  64
            ++
Sbjct  173  ML  174


>sp|Q0C9E8|MRH4_ASPTN ATP-dependent RNA helicase mrh4, mitochondrial 
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) 
OX=341663 GN=mrh4 PE=3 SV=2
Length=631

 Score = 93.6 bits (231),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 100/372 (27%), Positives = 154/372 (41%), Gaps = 63/372 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN--GVDIVV  344
            P+ +I+ P+ EL  Q    +K     I   K R  +I   +  R   + L N  G+DI+V
Sbjct  273  PRVIILVPTAELVAQVGAKVKTLSHTI---KYRSGMISSNLTPRRIKNTLFNPDGIDILV  329

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TP  L  +  T    LS+V  LVLDEAD LL + +      +  +     + G   ++I
Sbjct  330  TTPHLLASIAKTEPYVLSRVSHLVLDEADSLLDRSFQPITTEIIEK-----TSGSLQKLI  384

Query  405  VCSAT----LHSF------DVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDR  454
            +CSAT    L +F      D+++L+   +H           ++P  V   VV +     R
Sbjct  385  LCSATIPRSLDNFLRKKYPDIQRLTTPNLH-----------AIPRRVQLGVVDIQKDPYR  433

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
                L  + +      A D+   G  +        KIL     V   +  + D+   F R
Sbjct  434  GNRNLACADVIWSIGKAGDSEPAGPFASYQGPSVKKIL-----VFVNEREEADEVAQFLR  488

Query  515  TK-IDCDNLEQ------------YFIQQGGGPD--------KKGHQFSCVCLHGDRKPHE  553
            +K ID  +L +             F + G  P         KKG Q   +      KPHE
Sbjct  489  SKGIDAHSLSRDSSARRQEEILAEFTEAGAPPSSEEIMLAQKKGRQDDAIPFEAPSKPHE  548

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
                    K  + + L+ TD+A+RGID   V  VI   +P    +++HR+GR+GR  + G
Sbjct  549  P------HKLPNTKVLVTTDIASRGIDTLAVKTVILYHVPHTTIDFIHRLGRLGRMNKRG  602

Query  614  LAISLVATEKEK  625
              I LV  +  K
Sbjct  603  RGIVLVGKKDRK  614


 Score = 37.4 bits (85),  Expect = 0.65, Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 43/88 (49%), Gaps = 22/88 (25%)

Query  1    MAAFSEMGVMPEI-----AQAVEEMDWLLPTDIQAESIPLILGGGD--------------  41
            + +F +  ++P +     +QA+  +  + PT IQ  +IP +L   +              
Sbjct  142  ITSFDQFPLLPVVRHSIFSQALPGLHDVTPTPIQRVAIPRLLDDTNKDKKPKKRAEGEPE  201

Query  42   ---VLMAAETGSGKTGAFSIPVIQIVYE  66
                L+AAETGSGKT A+ IP++  V +
Sbjct  202  YDQYLLAAETGSGKTLAYLIPLVNTVKQ  229


>sp|Q54Q94|DDX10_DICDI Probable ATP-dependent RNA helicase ddx10 
OS=Dictyostelium discoideum OX=44689 GN=ddx10 PE=3 SV=1
Length=878

 Score = 94.0 bits (232),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 88/342 (26%), Positives = 147/342 (43%), Gaps = 66/342 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            A+++ P+RELA Q  + +K   KY         LIIGG   + +   + N ++I++ TPG
Sbjct  216  AIVLSPTRELAIQIFDVLKAVGKY---HTFSAGLIIGGRNVQQEKDKI-NAMNILIATPG  271

Query  349  RL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            RL   +  T   + S ++ LVLDEAD +L  G+S  +N +   +P      +  Q ++ S
Sbjct  272  RLLQHMDETYGFDCSNLKILVLDEADRILDLGFSKCLNSIVENLP------RERQTLLFS  325

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGED--SVPDTVHHV--VVPVNPKTDRLWERLGKSH  463
            AT  +  ++ L+   +  P ++ +  +D  + P  +     V+P+  K + L+       
Sbjct  326  AT-QTKSIRDLARLSLQEPEYISVYEKDITTTPQNLTQTLCVIPLEMKLNMLFS------  378

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 IK H   + I+F  +        
Sbjct  379  ------------------------------------FIKTHLTSKIIVFFASCKQVRFAH  402

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
            + F     G        +   LHG  K   R +  E F K     L  TD+AARG+D   
Sbjct  403  ETFKLLNPGT-------TLFPLHGKMKQWTRLEVFEDFCKKKAGTLFATDIAARGLDFPA  455

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAIS-LVATEKE  624
            V +VI V  PD+ + Y+HR+GR  R +  G +I+ L+ +EK+
Sbjct  456  VEWVIQVDCPDDIETYIHRVGRTARNDAPGQSITILLPSEKD  497


 Score = 50.4 bits (119),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 24/62 (39%), Positives = 40/62 (65%), Gaps = 0/62 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F ++ +     +A+ E  +L  TDIQ  S+P  L G D+L AA+TGSGKT +F +P+++ 
Sbjct  143  FKDLPISQLTLKALTESKFLKLTDIQRASLPHTLCGRDILGAAKTGSGKTLSFILPILET  202

Query  64   VY  65
            ++
Sbjct  203  LW  204


>sp|Q2H2J1|DBP4_CHAGB ATP-dependent RNA helicase DBP4 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=DBP4 PE=3 SV=1
Length=825

 Score = 93.6 bits (231),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 153/370 (41%), Gaps = 58/370 (16%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            ALI+ P+RELA Q    +++  +   N      L+IGG + +++   L   ++I+V TPG
Sbjct  128  ALIISPTRELAVQIFEVLRKIGR---NHFFSAGLVIGGKSLKEEAERL-GRMNILVCTPG  183

Query  349  R-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            R L  L  T   +++ ++ LVLDEAD ++  G+   ++ +   +P         Q ++ S
Sbjct  184  RMLQHLDQTANFDVNNLQILVLDEADRIMDMGFQSAVDALVEHLPTTR------QTLLFS  237

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT  S  V  L+   +  P +V          + H   V   P        L +S+I T 
Sbjct  238  AT-QSKRVSDLARLSLKEPEYV----------SAHEAAVSATPTN------LQQSYIVTP  280

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
             +  K +T  G     + S+ I        VR +                     E +  
Sbjct  281  -LAEKLDTLFGFLRTNLKSKIIVFFSSGKQVRFV--------------------FESFKR  319

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
             Q G P         + LHG +K   R +   RF       L  TDV ARG+D   V +V
Sbjct  320  MQPGIP--------LLHLHGRQKQVARMEITSRFSSAKYGCLFATDVVARGVDFPAVDWV  371

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDG  647
            +    P++   Y+HR+GR  R E  G A+  +   +E  +      +        ++E+ 
Sbjct  372  VQADCPEDADTYIHRVGRTARYESKGRAVLFLEPSEEAGFLKRLEQKKVPLQKVNVRENK  431

Query  648  GCTIWYNEMQ  657
              +I  NE+Q
Sbjct  432  KKSI-KNELQ  440


 Score = 52.0 bits (123),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 40/62 (65%), Gaps = 0/62 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+++ +    A  +    + + TD+Q  +IPL L G D+L AA+TGSGKT AF +PV++ 
Sbjct  55   FTDLPLCEATASGLRASHFEVLTDVQRAAIPLALKGRDILGAAKTGSGKTLAFLVPVLEK  114

Query  64   VY  65
            +Y
Sbjct  115  LY  116


>sp|Q2NL08|DDX55_BOVIN ATP-dependent RNA helicase DDX55 OS=Bos 
taurus OX=9913 GN=DDX55 PE=2 SV=1
Length=601

 Score = 92.8 bits (229),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 95/353 (27%), Positives = 151/353 (43%), Gaps = 57/353 (16%)

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV-AARDQLSVLE  337
            + KF  +   A+I+ P+RELA Q    +  F K    P+  ++L IGG     D     E
Sbjct  75   EEKFKKSQVGAIIITPTRELAVQIEEVLSHFTKPF--PQFSQILWIGGRNPGEDVARFKE  132

Query  338  NGVDIVVGTPGRLDDLVSTGK--LNLSQ----VRFLVLDEADGLLSQGYSDFINRMHNQI  391
             G +I+V TPGRL+D+       L+L+     +  LVLDEAD LL  G+   IN +   +
Sbjct  133  LGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLEVLVLDEADRLLDMGFETSINTILEFL  192

Query  392  PQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPK  451
            P+    G      + SAT  + +V+ L    +  P  + +K +     +           
Sbjct  193  PKQRRTG------LFSAT-QTQEVENLVRAGLRNPVRISVKEKGVAASS-----------  234

Query  452  TDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAII  511
            T +   RL             +N      + E +++ +  L+          HK ++ ++
Sbjct  235  TQKTPSRL-------------ENHYMVCKADEKFNQLVHFLRN---------HKQEKHLV  272

Query  512  FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLIC  571
            F  T   C  +E Y    G   +        +C+HG  K ++R +    F+K     L+C
Sbjct  273  FFST---CACVEYY----GKALETLVKGVKIMCIHGKMK-YKRNKIFMEFRKLQSGILVC  324

Query  572  TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            TDV ARGIDI  V +V+    P     +VHR GR  R    G A+  +   +E
Sbjct  325  TDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLPMEE  377


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 24/69 (35%), Positives = 41/69 (59%), Gaps = 3/69 (4%)

Query  11  PEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKD  70
           P++   + E+ +   T +Q+ +IPL +   DV   A TGSGKT AF IP+ +I+   L+ 
Sbjct  18  PKVLSVLRELGFPYMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPIEEIL---LRR  74

Query  71  QQEGKKGKT  79
           +++ KK + 
Sbjct  75  EEKFKKSQV  83


>sp|A7EAY2|MAK5_SCLS1 ATP-dependent RNA helicase mak5 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=mak5 PE=3 SV=1
Length=780

 Score = 93.6 bits (231),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 103/351 (29%), Positives = 151/351 (43%), Gaps = 45/351 (13%)

Query  287  PKALIVEPSRELAEQTLNNIKQF-KKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            P ALI+ P+RELA Q   +I    K    +P +    + GG++ + Q   L    DI++G
Sbjct  294  PTALILSPTRELAHQLTEHITTLCKGMPTSPYV--AAVTGGLSVQKQQRQLSKA-DIIIG  350

Query  346  TPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGY-------SDFINRMHNQIPQVT  395
            TPGRL +++S+       L QVRFLV+DEAD LL+ G+        + ++R H       
Sbjct  351  TPGRLWEVISSSNELSAGLKQVRFLVIDEADRLLTDGHFKEAEEILNALDRTHGNEDDDE  410

Query  396  SDG-KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDR  454
             D     Q +V SAT H    K L +K+         KG+ S  D    +        + 
Sbjct  411  EDTLPPRQTLVFSATFH----KGLQQKLAG-------KGKQSFKDDSQSM--------EY  451

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
            L ++L     +   V     ++  AN  E   E     K  Y    +  H   + +IF  
Sbjct  452  LLKKLNFREEKPKFVDVNPISQMAANLKEGMVECGGEEKDLYLYSLLLHHPNQRTLIFTN  511

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV--RFLICT  572
            +      L          P  +        LH       R +++E+F + +     L+ T
Sbjct  512  SIHSVRRLT---------PMLQTLNIPAHSLHSQMIQKARMRSIEKFSRTNNTGSVLVAT  562

Query  573  DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
            DVAARG+DI GV  VI+  LP     YVHR GR  RA   G +I L   E+
Sbjct  563  DVAARGLDIGGVQLVIHYHLPRTADMYVHRSGRTARAAASGSSILLCGPEE  613


 Score = 53.9 bits (128),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 31/89 (35%), Positives = 51/89 (57%), Gaps = 0/89 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++ + E+ +      A+ +M +  PT IQ+E+IP +L G DV+  A TGSGKT AF IP+
Sbjct  212  VSGWVELDLSSNTLMALSKMGFSKPTPIQSEAIPEVLAGHDVVGKASTGSGKTLAFGIPI  271

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLN  89
            ++   E   +  E +  K+T    A +L+
Sbjct  272  VEKWLEVYGELDEDELKKSTRPPTALILS  300


>sp|Q4WRP2|MS116_ASPFU ATP-dependent RNA helicase mss116, mitochondrial 
OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 
101355 / FGSC A1100 / Af293) OX=330879 GN=mss116 PE=3 SV=1
Length=655

 Score = 93.2 bits (230),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 152/334 (46%), Gaps = 45/334 (13%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN-GVDIVVGT  346
            +A+I+ P+RELAEQ     ++   +     +     +GG   R+ L  ++  G  +++GT
Sbjct  169  RAIIISPTRELAEQIAVEARRLAAH---SGVIVQTAVGGTQKREGLRRIQREGCHVLIGT  225

Query  347  PGRLDDLVSTGK--LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            PGRL D++S     +    +  LVLDEAD LL  G+SD I  +   +P      +  Q +
Sbjct  226  PGRLKDVLSDSYNGVTAPNLSTLVLDEADRLLDDGFSDAIIDIQRLLPDPMKVDR--QTL  283

Query  405  VCSATLHSFDVKKLSEKIM--HFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
            + SAT+   +V ++  K M  +F  +V    +D VP    H+ VP      R +E     
Sbjct  284  MFSATVPR-EVMQMVRKTMKPNF-KFVKTVRDDEVPT---HLTVPQKYVILRGYENA---  335

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
                               P +     K ++GE   +     +  +AI++  + +  + +
Sbjct  336  ------------------MPALLEFVTKYVEGE---KENPNQRPFKAIVYFNSTVQTNLV  374

Query  523  EQYF---IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
             + F   ++Q   P ++   +    +H       R ++ + F+      L  +DV ARG+
Sbjct  375  YETFRNIVEQRHHPLRRVRVYE---IHSQLTQARRTRSSDFFRAAKSAILFSSDVTARGM  431

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
            D   V +VI V++P ++  Y+HR+GR  RA + G
Sbjct  432  DFPDVTHVIQVSIPRDRATYIHRLGRTARANKTG  465


 Score = 47.4 bits (111),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (69%), Gaps = 2/61 (3%)

Query  4    FSEMGVM-PEIAQA-VEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +E G++ P+I +A V++M+    TD+Q++++  IL G DVL  A+TG+GKT AF  PV 
Sbjct  85   LAERGLVDPKIIRAIVKDMNIKTMTDVQSQTLREILQGDDVLAQAKTGTGKTLAFLTPVF  144

Query  62   Q  62
            Q
Sbjct  145  Q  145


>sp|Q59S50|DBP7_CANAL ATP-dependent RNA helicase DBP7 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP7 
PE=3 SV=1
Length=727

 Score = 93.2 bits (230),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 103/368 (28%), Positives = 158/368 (43%), Gaps = 77/368 (21%)

Query  289  ALIVEPSRELAEQ---TLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            A+I+ P+RELA Q    L  + +   +I        ++IGG   + + + L  G +I+V 
Sbjct  215  AIILTPTRELATQIYGVLETLTRCHHWI-----VPGIVIGGEKKKSEKARLRKGCNILVA  269

Query  346  TPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQI---PQVTSDGKRL  401
            TPGRL D L +T  L++SQ+R+LVLDE D L+  G+ D I ++  +I    ++    ++ 
Sbjct  270  TPGRLADHLENTKTLDISQLRWLVLDEGDKLMELGFEDTIAQITAKIDSNSKIADTAEKW  329

Query  402  Q-------VIVCSATLHSFDVKKLSEKIMHFPTWVDLK----------------GEDSVP  438
            Q        ++CSATLHS +VKKL   ++  P  + ++                   + P
Sbjct  330  QGLPSRRINMLCSATLHS-NVKKLGSIVLKDPEMISVETASVAGTVSFDETIATTTSTAP  388

Query  439  DTVHHVVVPVNPK-----TDRLWERLGK-SHIRTD---------DVHAKDNTRPGANSPE  483
            D +   VV V PK      D L  ++ K S  RT          D H    TR G    +
Sbjct  389  DQLIQNVVVVPPKLRLVTLDALLLKISKHSAERTIVFFSCSDSVDFHFDVFTRDGKKFKK  448

Query  484  MWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCV  543
            +  E      GE     +     +   +    ++  DN   Y                  
Sbjct  449  VTDEET----GEVKTVLVSPEDDENDGLLTAPQL-SDNTIIY------------------  485

Query  544  CLHGDRKPHERKQNLERFKKGDVRF---LICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600
             LHG      R   L+ F K +  +   L CTDVA+RG+D+  V  VI    P    +++
Sbjct  486  KLHGSLSQQTRASTLQSFVKDNNSYNKILFCTDVASRGLDLPNVANVIEYDPPFTIDDHL  545

Query  601  HRIGRVGR  608
            HRIGR  R
Sbjct  546  HRIGRSAR  553


 Score = 38.9 bits (89),  Expect = 0.18, Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query  4    FSEMGVMPEIA-QAVEEMDWLLPTDIQAESIP-LILGGGDVLMAAETGSGKTGAFSIPVI  61
            FS +G+  +++    + + ++ PT IQ   IP LI    D+ + A+TGSGKT AF +P+ 
Sbjct  137  FSGLGLNEKLSIHLTDHLRFMHPTKIQQLVIPSLISTENDLFVKAQTGSGKTLAFVLPIF  196

Query  62   Q  62
             
Sbjct  197  H  197


>sp|A1CTZ2|DBP4_ASPCL ATP-dependent RNA helicase dbp4 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp4 PE=3 SV=1
Length=823

 Score = 93.2 bits (230),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 91/342 (27%), Positives = 147/342 (43%), Gaps = 65/342 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            ALI+ P+RELA Q    +++  +Y         L+IGG + R++   L   ++I+V TPG
Sbjct  124  ALILSPTRELAIQIFEVLRKIGRY---HTFSAGLVIGGKSLREEQERL-GRMNILVCTPG  179

Query  349  R-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            R L  L  T   +   ++ LVLDEAD +L  G+   ++ +   +P      K  Q ++ S
Sbjct  180  RMLQHLDQTALFDTYNLQMLVLDEADRILDLGFQQTVDAIVGHLP------KERQTLLFS  233

Query  408  ATLHSFDVKKLSEKIMHFPTWVDL--KGEDSVPDTV--HHVVVPVNPKTDRLWERLGKSH  463
            AT  +  V  L+   +  P +V +      + P  +  H+V+ P+  K D LW     S 
Sbjct  234  AT-QTKKVSDLARLSLRDPEYVAVHETASTATPAKLQQHYVIAPLPQKLDILW-----SF  287

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
            IR++                + S+ +        VR +                     E
Sbjct  288  IRSN----------------LKSKTMVFFSSGKQVRFV--------------------YE  311

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +   Q G P         + LHG +K   R   +  F +     L  TDVAARG+D   
Sbjct  312  SFRHMQPGIP--------LMHLHGRQKQGGRLDIMTNFSQAKHCVLFSTDVAARGLDFPA  363

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            V +VI +  P++   Y+HR+GR  R  R G A+  +   +E+
Sbjct  364  VDWVIQMDCPEDADTYIHRVGRTARYGRDGRAVLFLDPSEEE  405


 Score = 46.6 bits (109),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 23/40 (58%), Positives = 30/40 (75%), Gaps = 0/40 (0%)

Query  26   TDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVY  65
            TDIQ+ +I   L G DVL AA+TGSGKT AF +PV++ +Y
Sbjct  73   TDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPVLENLY  112


>sp|Q59N29|SPB4_CANAL ATP-dependent rRNA helicase SPB4 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=SPB4 
PE=3 SV=1
Length=631

 Score = 92.8 bits (229),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 154/349 (44%), Gaps = 68/349 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPK---LRELLIIGGVA-ARDQLS-VLENGVDIV  343
            ++++ P+RELA Q  +   Q  +Y+   K   +   L++G +   R+ L+  L N   I+
Sbjct  96   SIVLSPTRELANQIQSVFNQVLQYLPEDKGTRINTQLLVGSIGNVREDLNQFLTNQPQIL  155

Query  344  VGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            +GTPGR L+ L S+  +  S +  ++LDEAD LL   +   +  +  ++P+    G    
Sbjct  156  IGTPGRILEFLGSSQSIKTSSLEIVILDEADKLLDFSFEKDVINILKKLPKQRRTG----  211

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLK-----GEDS-VPDTVHHVVVPVNPKTDRLW  456
              + SAT+ S     +    M+ P  V +K     GE S  P ++    + +NP+     
Sbjct  212  --LFSATISSAG-NTIFRTGMNNPVKVQVKSKNYFGEQSNSPKSLQLSYMMINPE-----  263

Query  457  ERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTK  516
                                               LK    +  + +++  +AI++  T 
Sbjct  264  -----------------------------------LKITTLLTILSKYQYKKAIVYFPTC  288

Query  517  IDCDNLEQYF--IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF----LI  570
                +  Q F  + Q    D+    FS   LHG      R + L+ F +GD+      L+
Sbjct  289  TSVKHFYQIFNKVYQQESSDEPLKFFS---LHGQLNTKSRLKTLDNFTQGDINLYKHILM  345

Query  571  CTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
             TDVAARGIDI  V  VI +  P +   ++HR GR GRA ++G AI ++
Sbjct  346  TTDVAARGIDIPDVDLVIQIDPPTDPNVFLHRCGRTGRANKVGRAIVML  394


 Score = 51.6 bits (122),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 25/56 (45%), Positives = 37/56 (66%), Gaps = 0/56 (0%)

Query  13  IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETL  68
           I +A+  M +   T +QA +IPL+ G  DV++ A TGSGKT +F IPV+Q + + L
Sbjct  21  IKEAISSMGYPTMTPVQASTIPLLSGNKDVVVEAVTGSGKTLSFVIPVLQKISDRL  76


>sp|Q99PT0|DDX52_RAT Probable ATP-dependent RNA helicase DDX52 
OS=Rattus norvegicus OX=10116 GN=Ddx52 PE=2 SV=1
Length=598

 Score = 92.8 bits (229),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 148/348 (43%), Gaps = 57/348 (16%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLI-IGGVAARDQLSVLENGVDIVVGT  346
            +AL++ P+RELA Q     ++  K  +    R  +I    +AA+          DI+V T
Sbjct  237  RALVISPTRELASQIH---RELIKISEGTGFRIHMIHKAAIAAKKFGPKSSKKFDILVTT  293

Query  347  PGRLDDLVSTGK--LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            P RL  L+      ++L+ V +LV+DE+D L   G + F +++ +     TS   +++  
Sbjct  294  PNRLIYLLKQEPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSP--KVRRA  351

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT  ++DV++  +  +     V +   +S  +TV   ++ V  +T +L         
Sbjct  352  MFSATF-AYDVEQWCKLNLDNIVSVSIGARNSAVETVEQELLFVGSETGKL---------  401

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                +  ++  + G N P                           ++F ++      L  
Sbjct  402  ----LAMRELVKKGFNPP--------------------------VLVFVQSIERAKELFH  431

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
              I +G   D          +H +R   +R   +  F+ G +  LICT + ARGID  GV
Sbjct  432  ELIYEGINVD---------VIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGV  482

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
              VIN   P     Y+HRIGR GRA   G A++    + + +   V +
Sbjct  483  NLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTEDDKPLLRSVAN  530


 Score = 53.9 bits (128),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/56 (43%), Positives = 39/56 (70%), Gaps = 0/56 (0%)

Query  6    EMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            E  + P + Q + +  + +PT IQ ++IP++L G ++L +A TGSGKT AFSIP++
Sbjct  170  EYKISPRLLQNILDAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPIL  225


>sp|A3GGE9|DBP4_PICST ATP-dependent RNA helicase DBP4 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DBP4 PE=3 SV=2
Length=765

 Score = 93.2 bits (230),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 89/343 (26%), Positives = 151/343 (44%), Gaps = 66/343 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            ALIV P+RELA QT   + +  KY         L+ GG   + +   + + ++I+VGTPG
Sbjct  122  ALIVSPTRELAVQTFEVLTKIGKY---NTFSAGLVTGGKDVQYEKERV-SRMNILVGTPG  177

Query  349  RLDD-LVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            R+   L     +  S ++ LVLDEAD  L  G+   I+ +   +P         Q ++ S
Sbjct  178  RISQHLNEAVGMETSNLQVLVLDEADRCLDMGFKKQIDNIVGHLPPTR------QTLLFS  231

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSV---PDTV--HHVVVPVNPKTDRLWERLGKS  462
            AT+ S  VK L+   +  P  + +  +  V   P+++  +++ +P++ K D LW  + KS
Sbjct  232  ATV-SDSVKDLARLSLTNPKRIGVSSDQDVSATPESLDQYYIRIPLDEKLDVLWSFI-KS  289

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
            H+++                       KIL                 + F  +K      
Sbjct  290  HLKS-----------------------KIL-----------------VFFSSSKQVQYAY  309

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
            E +   Q G         S + L+G  K   R +   +F +     L  TD+ ARG+D  
Sbjct  310  ETFRTLQPG--------ISLLKLYGRHKQTSRLETTVKFTQAQYACLFATDIVARGLDFP  361

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
             + +V+ V  P++   YVHR+GR  R  R G ++ ++   +E+
Sbjct  362  AIDWVVQVDCPEDAVTYVHRVGRAARFGRQGKSLLMLLPSEEE  404


 Score = 55.1 bits (131),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 0/62 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++ FS++ +  E  + + E  ++  TDIQ ++IP+ L G D++  A TGSGKT AF IPV
Sbjct  46   ISQFSDLPITQETLRGLNESSFMSLTDIQKKTIPIALKGEDLMGTARTGSGKTLAFLIPV  105

Query  61   IQ  62
            ++
Sbjct  106  VE  107


>sp|Q4HZ68|DBP7_GIBZE ATP-dependent RNA helicase DBP7 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=DBP7 PE=3 SV=1
Length=744

 Score = 92.8 bits (229),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 99/355 (28%), Positives = 156/355 (44%), Gaps = 45/355 (13%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            A+IV P+RELA+Q    +++  +    P L    I GG + + + + +  GV+ +V TPG
Sbjct  232  AIIVAPTRELAKQVHTVLEKLIRPF--PWLVSTAITGGESKKAEKARIRKGVNFLVATPG  289

Query  349  RLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV-----TSDGKRLQ  402
            RL D + +T  LNLS VR+L+LDE D L+  G+ D + ++   +  V       DG  L+
Sbjct  290  RLADHIDNTKALNLSIVRWLILDEGDRLMDLGFEDDLKKVITALKAVDVSDTLPDGTPLK  349

Query  403  -------VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED----------SVPDTVH--H  443
                    ++CSAT+   +V+KL E  +   T++  K ED            P  +H  +
Sbjct  350  ALPERRVTVLCSATM-KMNVQKLGEMSLADATFLAAKKEDMELDVQKSEMKAPAQLHQYY  408

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK-GEYAVRAIK  502
             VVP   +   L   L  +  R             A+S +   E ++     E  V A K
Sbjct  409  SVVPAKLRLVTLISYLKSTFSRRGKTMKAIIFISCADSVDFHYELLRDPNTTEAPVAASK  468

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
            E +           I     +  +I     P+   H+     +HG      R   L+ F 
Sbjct  469  EAE----------SISKTVSKAAYITSPASPEVVLHR-----MHGSLSQPIRTATLKSFS  513

Query  563  K-GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAI  616
                   LI TDV++RG+DI  V  VI         +++HR+GR  RA + G A+
Sbjct  514  ACKSPSLLITTDVSSRGLDIPSVDLVIEYDPAFSFADHIHRVGRTARAGKPGDAL  568


 Score = 39.3 bits (90),  Expect = 0.14, Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 35/65 (54%), Gaps = 1/65 (2%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIP-LILGGGDVLMAAETGSGKTGAFSIP  59
            +A F  + +   +   + +M    PT IQ + IP ++    D  + AETGSGKT A+ +P
Sbjct  149  VANFGTLTISARLVDELGKMGLERPTGIQNKVIPHMLTSSSDAFVQAETGSGKTLAYLLP  208

Query  60   VIQIV  64
            ++  V
Sbjct  209  ILHRV  213


>sp|Q6C835|DBP7_YARLI ATP-dependent RNA helicase DBP7 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP7 PE=3 
SV=1
Length=799

 Score = 92.8 bits (229),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 153/359 (43%), Gaps = 57/359 (16%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            A+I+ P+REL  Q  + ++   +    P +   ++IGG   + + + +  GV+I+V TPG
Sbjct  310  AVILTPTRELTTQIYSVLETLCRKA-CPWIVPGIVIGGEKKKSEKARIRKGVNILVATPG  368

Query  349  RL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM------------HNQIPQVT  395
            RL D   +T  L+LSQVR++VLDE D L+  G+ + I ++             N +  + 
Sbjct  369  RLADHFDNTEALDLSQVRWVVLDEGDRLMELGFEETITKILRTIEWKSVLRGENYLKDIP  428

Query  396  SDGK----RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP----  447
             + K    R   ++CSAT+    V +L +  +    WV     DSV D +    V     
Sbjct  429  KNLKPLPSRRVTVLCSATMKG-GVTELGKSTLKDADWV---SNDSVEDALAETSVETFSA  484

Query  448  ---------VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAV  498
                     V P   RL   LG   +R D + + + T          S+++       + 
Sbjct  485  PSQLVQEWVVVPAKLRLVTLLG--ALRGDILQSSEKTNTKVIVFLSCSDSVDFHFDVLSR  542

Query  499  RAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNL  558
               + +KMD A        D                      S   LHG      R   L
Sbjct  543  DGSQINKMDTAKTAPLLLDDVST-------------------SVYKLHGSLSQQARTATL  583

Query  559  ERFKKGDV-RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAI  616
              F K      L+CTDVA+RG+D+  + +VI    P   ++++HR+GR  RA + G A+
Sbjct  584  ASFAKNSTPSILLCTDVASRGLDLPKITHVIEYDPPFSIEDHLHRVGRTARAGQDGRAL  642


 Score = 43.9 bits (102),  Expect = 0.006, Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 1/62 (2%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIP-LILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            FS +G    +  A+  M    PT IQ  +IP LI    D+ + A+TGSGKT AF +PV++
Sbjct  235  FSGLGCSQRLVDALVGMQLAKPTKIQRATIPRLIQRERDLFVQAQTGSGKTLAFVLPVLE  294

Query  63   IV  64
             +
Sbjct  295  RI  296


>sp|Q5ZBH5|RH25_ORYSJ DEAD-box ATP-dependent RNA helicase 25 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os01g0618400 PE=2 
SV=1
Length=594

 Score = 92.4 bits (228),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 146/340 (43%), Gaps = 65/340 (19%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV-AARDQLSVLENGVDIVVGTPG  348
            L++ P+RELA Q     K+  KY  +  L   ++IGG    ++Q S+  N   I+V TPG
Sbjct  206  LVMCPTRELAIQVAVEAKKLLKY--HRSLGVQVVIGGTRLTQEQRSMQANPCQILVATPG  263

Query  349  RLDDLVSTG---KLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            RL D V         L  V+ LVLDEAD LL  G+   I R+   +P      K  Q ++
Sbjct  264  RLKDHVENTPGFSTRLKGVKVLVLDEADRLLDMGFRRDIERIIASVP------KERQTLL  317

Query  406  CSATLHSFDVKKLSEKIMH-----FPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLG  460
             SAT+   +V+++S   M        T  D   E     +   ++ P++     L++ L 
Sbjct  318  FSATVPE-EVRQISHIAMKKNYKFINTVKDGDEETHAQVSQMFMIAPLDLHFSILYDVL-  375

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
            K H+  D                           +Y V           IIFC T +   
Sbjct  376  KKHVAED--------------------------ADYKV-----------IIFCTTAMVTK  398

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             + +   Q          + +   +H  +    R +  + F+K     L+ +DV+ARG+D
Sbjct  399  LVAEILSQ---------LRLNIREIHSRKSQSARTKVSDEFRKSRGLILVSSDVSARGVD  449

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
               V  VI V +P ++Q Y+HR+GR GR  + G  + L+A
Sbjct  450  YPDVTLVIQVGVPADRQQYIHRLGRTGRKGKEGQGLLLLA  489


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 23/61 (38%), Positives = 39/61 (64%), Gaps = 0/61 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +  + P   +AV++  +   T +Q  ++P+IL G DVL  A+TG+GKT AF +P I++
Sbjct  128  FDQCTISPLSLKAVKDAGYERMTQVQEATLPVILQGKDVLAKAKTGTGKTVAFLLPAIEV  187

Query  64   V  64
            +
Sbjct  188  L  188


>sp|Q6FPT7|DBP4_CANGA ATP-dependent RNA helicase DBP4 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP4 PE=3 SV=1
Length=765

 Score = 92.8 bits (229),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 90/347 (26%), Positives = 152/347 (44%), Gaps = 55/347 (16%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            ALI+ P+RELA Q    + +   +    +    L+IGG     +L  +   ++I++GTPG
Sbjct  116  ALIISPTRELAMQIYEVLVKIGSHT---QFSAGLVIGGKDVNFELERIAK-INILIGTPG  171

Query  349  R-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            R L  +     LN S ++ LVLDEAD  L  G+   ++ +   +P         Q ++ S
Sbjct  172  RILQHMDQAVGLNTSNLQMLVLDEADRCLDMGFQKTLDAIVGNLP------PDRQTLLFS  225

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT  S  +  L+   +    +  +   DS  D       P  PKT      L +S+I  D
Sbjct  226  AT-QSQSISDLAR--LSLTDYKKIGTIDSSEDG------PATPKT------LQQSYIIAD  270

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                              ++ + +L   Y+   IK H   + I+F  +      + + F 
Sbjct  271  -----------------LADKLDVL---YSF--IKSHLKTKMIVFFSSSKQVHFVYETFR  308

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
            +   G        S + LHG +K   R + L++F +     L  TDV ARGID   V +V
Sbjct  309  KMQPG-------ISLLHLHGRQKQRARTETLDKFFRAQQVCLFATDVVARGIDFPAVDWV  361

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            I V  P++   Y+HR+GR  R  + G ++ ++  ++E     + + +
Sbjct  362  IQVDCPEDVDTYIHRVGRAARYGKKGRSLIILTPQEEAFLTRMAAKK  408


 Score = 47.8 bits (112),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 24/62 (39%), Positives = 37/62 (60%), Gaps = 0/62 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F ++ +     + + E  ++  TDIQ +SI   L G DV   A+TGSGKT AF +PV++ 
Sbjct  43   FKDLPISKSTLKGLNEASFIKMTDIQRDSIVTSLQGHDVFGTAKTGSGKTLAFLVPVLEK  102

Query  64   VY  65
            +Y
Sbjct  103  LY  104


>sp|Q7S2N9|HAS1_NEUCR ATP-dependent RNA helicase has-1 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=has-1 PE=3 SV=1
Length=578

 Score = 92.0 bits (227),  Expect = 5e-18, Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 142/338 (42%), Gaps = 66/338 (20%)

Query  277  VTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
            ++  +F P N   A++V P+RELA Q     ++  K   N      ++IGG   R +   
Sbjct  169  LSSLRFKPRNGTGAIVVTPTRELALQIFGVARELMK---NHSQTYGVVIGGANRRAEAEK  225

Query  336  LENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
            L  GV++++ TPGRL D +         +R L++DEAD +L  G+ D + ++   +P+  
Sbjct  226  LGKGVNLLIATPGRLLDHLQNTPFVFKNMRSLIIDEADRILEIGFEDEMRQIIKILPK--  283

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-----HVVVPVNP  450
             + ++  +   + T    D+ ++S  +   P +V++  E     TV      +VVV  + 
Sbjct  284  -EDRQTMLFSATQTTKVEDLARIS--LRPGPLYVNVDEEKQF-STVEGLDQGYVVVDADK  339

Query  451  KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAI  510
            +   L+  L K   +   V          NS + +SE                       
Sbjct  340  RFLLLFSFLKKMQKKKVIVFFS-----SCNSVKYYSE-----------------------  371

Query  511  IFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLI  570
                       L QY                 + LHG +K  +R      F       LI
Sbjct  372  -----------LLQYI------------DLQVLDLHGKQKQQKRTNTFFEFCNAKQGTLI  408

Query  571  CTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
            CTDVAARG+DI  V +++    PD+ ++Y+HR+GR  R
Sbjct  409  CTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTAR  446


 Score = 58.2 bits (139),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 29/61 (48%), Positives = 41/61 (67%), Gaps = 0/61 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FSE+ +  +  +A+ EM +   T+IQ   IP +L G DVL AA+TGSGKT AF IP I++
Sbjct  109  FSELNLSDKTMKAIAEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEM  168

Query  64   V  64
            +
Sbjct  169  L  169


>sp|Q6FIL3|HAS1_CANGA ATP-dependent RNA helicase HAS1 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=HAS1 PE=3 SV=1
Length=494

 Score = 91.3 bits (225),  Expect = 5e-18, Method: Compositional matrix adjust.
 Identities = 89/330 (27%), Positives = 147/330 (45%), Gaps = 57/330 (17%)

Query  281  KFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
            KF P N    +I+ P+RELA Q    +++  ++         ++IGG   R +   L  G
Sbjct  95   KFKPRNGTGVIIITPTRELALQIFGVVRELMEFHSQT---FGIVIGGANRRQEAEKLMKG  151

Query  340  VDIVVGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
            V+++V TPGRL D L +T       ++ LV+DEAD +L  G+ D +     QI ++  + 
Sbjct  152  VNLLVATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMR----QIIKILPNE  207

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER  458
             R Q ++ SAT  +  V+ LS                                  R+  R
Sbjct  208  DR-QSMLFSAT-QTTKVEDLS----------------------------------RISLR  231

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
             G   I     H   +T  G     +  E+ K     ++   +K ++  + I+F  +   
Sbjct  232  PGPLFINVVSEH-DSSTADGLEQGYVVCESDKRFLLLFSF--LKRNQKKKIIVFLSS---  285

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
            C+++ +Y+ +     D        + LHG +K  +R      F   +   LICTDVAARG
Sbjct  286  CNSV-KYYAELLNYID-----LPVLELHGKQKQQKRTNTFFEFCNAERGILICTDVAARG  339

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
            +DI  V ++I    PD+ ++Y+HR+GR  R
Sbjct  340  LDIPAVDWIIQFDPPDDPRDYIHRVGRTAR  369


 Score = 54.3 bits (129),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 25/63 (40%), Positives = 42/63 (67%), Gaps = 0/63 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +F  + +     +A+E+M +   T +QA +IP ++ G DVL AA+TGSGKT AF +P I+
Sbjct  30  SFKSLNLSQPTMRAIEKMGFSKMTPVQARTIPPLMAGRDVLGAAKTGSGKTLAFLLPTIE  89

Query  63  IVY  65
           +++
Sbjct  90  LLH  92


>sp|Q6CXB7|HAS1_KLULA ATP-dependent RNA helicase HAS1 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=HAS1 PE=3 SV=1
Length=497

 Score = 91.3 bits (225),  Expect = 6e-18, Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 150/333 (45%), Gaps = 57/333 (17%)

Query  281  KFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
            KF P N    +++ P+RELA Q     ++  ++         ++IGG   R +   L  G
Sbjct  100  KFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQT---FGIVIGGANRRQEADKLMKG  156

Query  340  VDIVVGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
            V+I++ TPGRL D L +T       ++ LV+DEAD +L  G+ D + ++   +P   ++ 
Sbjct  157  VNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILP---NED  213

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER  458
            ++  +   + T    D+ ++S  +   P ++++   DS  DT                  
Sbjct  214  RQSMLFSATQTTKVEDLARIS--LRPGPLFINV---DSEKDT------------------  250

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
                           +T  G     +  E+ K     ++   +K ++  + I+F  +   
Sbjct  251  ---------------STADGLEQGYVVCESDKRFLLLFSF--LKRNQKKKVIVFLSS---  290

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
            C+++ +Y+ +     D        + LHG +K  +R      F   +   L+CTDVAARG
Sbjct  291  CNSV-KYYAELLNYID-----LPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARG  344

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
            +DI  V ++I    PD+ ++Y+HR+GR  R  +
Sbjct  345  LDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTK  377


 Score = 52.8 bits (125),  Expect = 9e-06, Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 42/63 (67%), Gaps = 0/63 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +FS++ +     +A+ +M +   T +Q  +IP +L G DVL AA+TGSGKT AF IP I+
Sbjct  35  SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE  94

Query  63  IVY  65
           +++
Sbjct  95  MLH  97


>sp|A6ZPU3|DBP4_YEAS7 ATP-dependent RNA helicase DBP4 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DBP4 PE=3 SV=1
Length=770

 Score = 92.4 bits (228),  Expect = 6e-18, Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 156/356 (44%), Gaps = 69/356 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            ALI+ P+RELA Q    + +   +         L+IGG   + +L  +   ++I++GTPG
Sbjct  116  ALIISPTRELAMQIYEVLTKIGSHTS---FSAGLVIGGKDVKFELERISR-INILIGTPG  171

Query  349  R-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            R L  L     LN S ++ LVLDEAD  L  G+   ++ +      V++     Q ++ S
Sbjct  172  RILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAI------VSTLSPSRQTLLFS  225

Query  408  ATLHS--FDVKKLS---EKIMHFPTWVD--LKGEDSVPDTVH--HVVVPVNPKTDRLWER  458
            AT      D+ +LS    K +     +D  +  E S P+T+   ++ VP+  K D L+  
Sbjct  226  ATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLADKLDILFSF  285

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
            + KSH++                                          + I+F  +   
Sbjct  286  I-KSHLKC-----------------------------------------KMIVFLSSSKQ  303

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
               + + F +   G        S + LHG +K   R + L++F +     L  TDV ARG
Sbjct  304  VHFVYETFRKMQPG-------ISLMHLHGRQKQRARTETLDKFNRAQQVCLFATDVVARG  356

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            ID   V +V+ V  P++   Y+HR+GR  R  + G ++ ++  ++++ +    ++R
Sbjct  357  IDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLTPQEQEAFLKRLNAR  412


 Score = 57.4 bits (137),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 42/62 (68%), Gaps = 0/62 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F ++ +     + + E  ++  T+IQA+SIP+ L G DVL AA+TGSGKT AF +PVI+ 
Sbjct  43   FKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEK  102

Query  64   VY  65
            +Y
Sbjct  103  LY  104


>sp|Q74Z73|HAS1_EREGS ATP-dependent RNA helicase HAS1 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=HAS1 PE=3 SV=2
Length=504

 Score = 91.3 bits (225),  Expect = 6e-18, Method: Compositional matrix adjust.
 Identities = 83/335 (25%), Positives = 142/335 (42%), Gaps = 61/335 (18%)

Query  281  KFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
            KF P N    +++ P+RELA Q     ++  ++         ++IGG   R +   L  G
Sbjct  105  KFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQT---FGIVIGGANRRQEAEKLAKG  161

Query  340  VDIVVGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
            V++++ TPGRL D L +T       ++ LV+DEAD +L  G+ D + ++   +P   ++ 
Sbjct  162  VNLLIATPGRLLDHLQNTKGFVFKNLKALVIDEADRILEIGFEDEMKQIIKILP---NED  218

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH--HVVVPVNPKTDRLW  456
            ++  +   + T    D+ ++S +       VD + E S  D +   +VV   + +   L+
Sbjct  219  RQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKETSTADGLEQGYVVCDSDKRFLLLF  278

Query  457  ERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTK  516
              L K   +   V          NS + ++E +                           
Sbjct  279  TFLKKFQNKKIIVFLS-----SCNSVKYYAELLNY-------------------------  308

Query  517  IDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAA  576
            ID   LE                     LHG +K  +R      F   +   L+CTDVAA
Sbjct  309  IDLPVLE---------------------LHGKQKQQKRTNTFFEFCNAERGILVCTDVAA  347

Query  577  RGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
            RG+DI  V ++I    PD+ ++Y+HR+GR  R  +
Sbjct  348  RGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTK  382


 Score = 54.7 bits (130),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 42/62 (68%), Gaps = 0/62 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F E+ +  +  +A+ +M +   T +QA +IP ++ G DVL AA+TGSGKT AF +P I++
Sbjct  41   FDELNLSSQTLKAIGKMGFTKMTQVQARTIPPLMAGRDVLGAAKTGSGKTLAFLLPAIEM  100

Query  64   VY  65
            ++
Sbjct  101  LH  102


>sp|A5E2I8|SPB4_LODEL ATP-dependent rRNA helicase SPB4 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=SPB4 PE=3 SV=1
Length=637

 Score = 91.7 bits (226),  Expect = 6e-18, Method: Compositional matrix adjust.
 Identities = 93/391 (24%), Positives = 173/391 (44%), Gaps = 71/391 (18%)

Query  289  ALIVEPSRELAEQ---TLNNIKQFKKYIDN--PKLRELLIIG--GVAARDQLSVLENGVD  341
            A+++ P+RELA+Q     + + +     D+  P+++  L++G  G    D  S  EN   
Sbjct  96   AIVMAPTRELAKQIQMVFDKVLELLPEEDSYEPRIKTQLLVGFLGNVREDLDSYQENRPQ  155

Query  342  IVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL  401
            I++ TPGRL D +S   +  S +  ++LDEAD LL   +   + ++   +P+    G   
Sbjct  156  ILIATPGRLLDFMSLQIVKTSSLEIVILDEADKLLDMSFETDVIKILKMLPKQRRTG---  212

Query  402  QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK  461
               + SAT+ +                          DT+    +  NP          K
Sbjct  213  ---LFSATISA------------------------AGDTIFRTGMN-NP---------VK  235

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEY----AVRAIKEHKMDQAIIFCRTKI  517
              ++T +   + N     N+P     +  +++ E+     ++ +++++  +AI++  T  
Sbjct  236  LQVKTKNFLGEQN-----NAPTSLQLSYMMIEPEHKLTTMLQMLRDNQFKKAIVYFPT--  288

Query  518  DCDNLEQYF-----IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR----F  568
             C +++ ++     + +    D          LHG      R   LE+F +G+       
Sbjct  289  -CTSVKHFYQMLSKLCKSSANDIDISALLFFSLHGQLTTKSRLNTLEKFTEGNDESKKYI  347

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            L+ TDVAARGIDI  V  VI +  P +   ++HR GR GRA ++G AI ++  + ++  Y
Sbjct  348  LMATDVAARGIDIPDVDLVIQIDPPTDPSVFLHRCGRTGRANKVGRAIVMLNNDTQEEDY  407

Query  629  HVCSSRGKGCYNTRLK--EDGGCTIWYNEMQ  657
             V     K  + T++   ED     ++N+ Q
Sbjct  408  -VGFMEVKSVFMTKIDPPEDKDNHSFHNKFQ  437


 Score = 58.5 bits (140),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 30/74 (41%), Positives = 46/74 (62%), Gaps = 0/74 (0%)

Query  11  PEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKD  70
           P +  A+  +++   T +QA +IPL+ G  DV++ A TGSGKT AF+IPV+Q V + L  
Sbjct  19  PWLKDAIRSLNYPTMTPVQASTIPLLSGNKDVIVEAVTGSGKTLAFAIPVLQKVSKRLYQ  78

Query  71  QQEGKKGKTTIKTG  84
             EG++    +K G
Sbjct  79  VPEGEEKPEPVKRG  92


>sp|P20448|DBP4_YEAST ATP-dependent RNA helicase HCA4 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=HCA4 
PE=1 SV=2
Length=770

 Score = 92.0 bits (227),  Expect = 6e-18, Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 156/356 (44%), Gaps = 69/356 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            ALI+ P+RELA Q    + +   +         L+IGG   + +L  +   ++I++GTPG
Sbjct  116  ALIISPTRELAMQIYEVLTKIGSHTS---FSAGLVIGGKDVKFELERISR-INILIGTPG  171

Query  349  R-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            R L  L     LN S ++ LVLDEAD  L  G+   ++ +      V++     Q ++ S
Sbjct  172  RILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAI------VSTLSPSRQTLLFS  225

Query  408  ATLHS--FDVKKLS---EKIMHFPTWVD--LKGEDSVPDTVH--HVVVPVNPKTDRLWER  458
            AT      D+ +LS    K +     +D  +  E S P+T+   ++ VP+  K D L+  
Sbjct  226  ATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLADKLDILFSF  285

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
            + KSH++                                          + I+F  +   
Sbjct  286  I-KSHLKC-----------------------------------------KMIVFLSSSKQ  303

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
               + + F +   G        S + LHG +K   R + L++F +     L  TDV ARG
Sbjct  304  VHFVYETFRKMQPG-------ISLMHLHGRQKQRARTETLDKFNRAQQVCLFATDVVARG  356

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            ID   V +V+ V  P++   Y+HR+GR  R  + G ++ ++  ++++ +    ++R
Sbjct  357  IDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLTPQEQEAFLKRLNAR  412


 Score = 57.0 bits (136),  Expect = 5e-07, Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 42/62 (68%), Gaps = 0/62 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F ++ +     + + E  ++  T+IQA+SIP+ L G DVL AA+TGSGKT AF +PVI+ 
Sbjct  43   FKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEK  102

Query  64   VY  65
            +Y
Sbjct  103  LY  104


>sp|Q6CKZ4|DBP6_KLULA ATP-dependent RNA helicase DBP6 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP6 PE=3 SV=1
Length=630

 Score = 91.7 bits (226),  Expect = 7e-18, Method: Compositional matrix adjust.
 Identities = 83/301 (28%), Positives = 135/301 (45%), Gaps = 43/301 (14%)

Query  336  LENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
            L N  DI++ TPGRL D +     +L  ++FLVLDEAD LL+Q + ++   + + +    
Sbjct  308  LYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLNQSFQNWNQVLFHHLTNDK  367

Query  396  SDGKRLQVI--VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTD  453
             D +   VI  V SATL + + +KL    +H P          + D+V    +P      
Sbjct  368  QDKRPGNVIKMVFSATLTT-NAEKLYNLYLHNPKIF-------LTDSVKLYSIP------  413

Query  454  RLWERLGKSHIRTDDVHAKDNTRPGANS---PEMWSEAIKILKGEYAVRAIKEHKMDQAI  510
               ++L + ++            P A S   P +    I  +K   +  A       + +
Sbjct  414  ---KKLQELNVNI----------PTAKSLFKPLLLLRIIHDIKSSASRNA-------KIL  453

Query  511  IFCRTKIDCDNLEQYF-IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR--  567
            +F ++      LE       G G  +  +      +H +      ++ ++ F   + +  
Sbjct  454  VFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLSSIHSNISKGSSRKLIQEFASSEQKKS  513

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAIS-LVATEKEKV  626
             LI TD+ ARGIDI+ + +VIN  LP   Q YVHR GR  RA   G+AI+ LV   ++K 
Sbjct  514  VLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKF  573

Query  627  W  627
            W
Sbjct  574  W  574


 Score = 38.9 bits (89),  Expect = 0.20, Method: Compositional matrix adjust.
 Identities = 15/25 (60%), Positives = 22/25 (88%), Gaps = 0/25 (0%)

Query  40   GDVLMAAETGSGKTGAFSIPVIQIV  64
            GD+L+ A TGSGKT A+S+P++QI+
Sbjct  229  GDILVNASTGSGKTLAYSVPLVQIL  253


>sp|Q9UTP9|DBP4_SCHPO ATP-dependent RNA helicase dbp4 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp4 
PE=1 SV=1
Length=735

 Score = 91.7 bits (226),  Expect = 8e-18, Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 160/379 (42%), Gaps = 73/379 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLREL---LIIGGVAARDQLSVLENGVDIVVG  345
            AL++ P+RELA QT      F+  +   +L      LIIGG   +++   L   ++I+V 
Sbjct  114  ALVISPTRELAIQT------FETLVKIGRLHSFSAGLIIGGNNYKEEKERLSR-MNILVC  166

Query  346  TPGRLDDLVSTG-KLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            TPGRL   +      + S ++ L+LDEAD +L  G+   ++ + + +P         Q +
Sbjct  167  TPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPV------HRQTM  220

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGED--SVPDTVH--HVVVPVNPKTDRLWERLG  460
            + SAT  +  VK L+   +  P ++ +   D  S P  ++  ++ VP+  K D L+    
Sbjct  221  LFSAT-QTKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLTVPLTEKLDILF----  275

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
               IRT                                     H   + I+F  +     
Sbjct  276  -GFIRT-------------------------------------HLKFKTIVFLSSCKQVR  297

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             + + F +   G        S + LHG +K   R +   +F       L CTD+ ARG+D
Sbjct  298  FVYETFRRMRPG-------ISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLD  350

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYN  640
               V +VI +  P++   Y+HR+GR  R  R G A+ L+    E+ +     S+      
Sbjct  351  FPAVDWVIQLDAPEDVDTYIHRVGRTARYNRSGNAL-LLLLPSEEAFLKRLESKKIAVER  409

Query  641  TRLKEDGGCTIWYNEMQLL  659
              +K DG  T   N++Q L
Sbjct  410  INVK-DGKKTSIRNQLQNL  427


 Score = 52.0 bits (123),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 40/62 (65%), Gaps = 0/62 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+E+ +      A++   ++  T+IQ + IP  L G D+L AA+TGSGKT AF +P+I+ 
Sbjct  41   FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIEN  100

Query  64   VY  65
            +Y
Sbjct  101  LY  102


>sp|Q2GV49|SPB4_CHAGB ATP-dependent rRNA helicase SPB4 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / 
NBRC 6347 / NRRL 1970) OX=306901 GN=SPB4 PE=3 SV=1
Length=646

 Score = 91.3 bits (225),  Expect = 9e-18, Method: Compositional matrix adjust.
 Identities = 107/373 (29%), Positives = 171/373 (46%), Gaps = 69/373 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKY-------------------IDNPKLRELLIIGGV-  327
            +A+I+ P+RELA Q  N +  F K+                      P +   L++GG  
Sbjct  90   QAIIISPTRELASQIYNVLVSFLKFHAPSAHLLPHAKGDEKRPATTEPVVVPQLLVGGTT  149

Query  328  -AARDQLSVLENGVDIVVGTPGRLDDLVSTG--KLNLSQVRFLVLDEADGLLSQGYSDFI  384
             AA D  + L    +I++GTPGRL +L+ST   K   S    LV+DEAD LL  G+S  +
Sbjct  150  KAAEDLSTFLRLSPNILIGTPGRLAELLSTPYVKAPSSSFEVLVMDEADRLLDLGFSQEL  209

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPD--TVH  442
             R+   +P+    G      + SA+L S  V++L    + +P  + ++ + S+ D   V 
Sbjct  210  TRILGYLPKQRRTG------LFSASL-SEAVERLITVGLLYPHKITVRVK-SLRDGGIVQ  261

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
                P++         L  S+I T          P +       + ++ L          
Sbjct  262  ERKTPMS---------LQMSYIVT----------PASQKIPALCQLLERL----------  292

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF-  561
            E +  ++I+F  T   C  + +YF +   G    G  FS V LHG  +P  R++N ERF 
Sbjct  293  EPRPSRSIVFFST---CFAV-KYFARVLHGILPPG--FSIVSLHGKLEPQVREKNFERFV  346

Query  562  KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT  621
                   L+ TD+AARG+DI  V  V+    P + + ++HR GR GRA R GLA+ ++  
Sbjct  347  NAASPTVLLTTDIAARGLDIPQVDLVVQHDPPTDTKVFIHRCGRAGRAGRRGLAVVMLQP  406

Query  622  EKEKVWYHVCSSR  634
             +E+ +  +   R
Sbjct  407  GREEGYVQLLDVR  419


 Score = 38.9 bits (89),  Expect = 0.18, Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (55%), Gaps = 0/55 (0%)

Query  8   GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            + P I   +  M +  PT +Q     +  G  DV++ A TGSGKT AF IPV++
Sbjct  21  SLAPWILDYLSSMGFEQPTPVQKSCFDIFRGNKDVVVEAVTGSGKTLAFLIPVVE  75


>sp|Q9DGP9|DDX25_XENLA ATP-dependent RNA helicase DDX25 OS=Xenopus 
laevis OX=8355 GN=deadsouth PE=2 SV=1
Length=483

 Score = 90.5 bits (223),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 98/380 (26%), Positives = 160/380 (42%), Gaps = 77/380 (20%)

Query  256  VALSKAPDGYIVKSQHSGN--------AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIK  307
            + L+  P   I +SQ SG         A +++       P+ + + P+ ELA QT   ++
Sbjct  130  MMLADPPQNLIAQSQ-SGTGKTAAFVLAMLSRVDANKKYPQCICLSPTFELALQTGKVVE  188

Query  308  QFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKL-NLSQVRF  366
            +  K+    ++   L         +L        IV+GTPG + D     +L  +  +  
Sbjct  189  EMGKFCAGIEVIYALRGNRPGKGSRLEA-----QIVIGTPGTVLDWCFKLRLITVENISV  243

Query  367  LVLDEADGLLS-QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF  425
             VLDEAD +++ QG+SD   R+   +P      K  Q+++ SAT     V   +E+I+  
Sbjct  244  FVLDEADVMINVQGHSDHSVRVKRSMP------KSCQMLLFSATFED-SVWAFAERIVPD  296

Query  426  PTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW  485
            P  + LK E+     +                         D    K+            
Sbjct  297  PNIIKLKKEELTLKNIQQFY---------------------DQCENKE------------  323

Query  486  SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL  545
             +    L   Y V  I      QAI+FC+T+     L Q            GHQ +   L
Sbjct  324  -QKYSALCNLYGVITIA-----QAIVFCQTRKIASWLSQKL-------SDDGHQVAL--L  368

Query  546  HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP------DEKQNY  599
             G+   ++R   ++RF++G  + L+ T+V ARGID+  V  V+N  LP       + + Y
Sbjct  369  SGELPVYDRADMIQRFREGREKVLVTTNVCARGIDVEQVSIVVNFDLPVNVDGSVDFETY  428

Query  600  VHRIGRVGRAERMGLAISLV  619
            +HRIGR GR  + G+A+SL+
Sbjct  429  LHRIGRTGRFGKKGIAVSLI  448


 Score = 35.4 bits (80),  Expect = 1.9, Method: Compositional matrix adjust.
 Identities = 16/64 (25%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSIPV  60
            +F E+ +  E+ + +  M +  P+ IQ  ++P++L     +++  +++G+GKT AF + +
Sbjct  98   SFEELHLKNELLRGIYAMGFNRPSKIQENALPMMLADPPQNLIAQSQSGTGKTAAFVLAM  157

Query  61   IQIV  64
            +  V
Sbjct  158  LSRV  161


>sp|Q4IAS1|DBP4_GIBZE ATP-dependent RNA helicase DBP4 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=DBP4 PE=3 SV=1
Length=793

 Score = 91.3 bits (225),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 88/341 (26%), Positives = 140/341 (41%), Gaps = 65/341 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            ALI+ P+RELA Q    ++   K          L+IGG + +++   L+  ++I+V TPG
Sbjct  126  ALIISPTRELAAQIFEVLR---KVGTKHSFSAGLVIGGKSLKEEAERLDR-MNILVCTPG  181

Query  349  R-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            R L     T   + + ++ LVLDEAD ++  G+   ++ +   +P      +  Q ++ S
Sbjct  182  RMLQHFDQTAGFDANNLQILVLDEADRIMDMGFQSAVDALIEHLP------RERQTLMFS  235

Query  408  ATLHSFDVKKLSEKIMHFPTWVDL--KGEDSVPDTV--HHVVVPVNPKTDRLWERLGKSH  463
            AT  S  V  L+   +  P +V +      + P  +  H++V P+  K D L+       
Sbjct  236  AT-QSKKVSDLARLSLKDPEYVSVHEAAVSATPTNLQQHYIVTPLTEKLDTLY-------  287

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                          G     + S+ I  L     VR +                     E
Sbjct  288  --------------GFIKANLKSKIIVFLSSGKQVRFV--------------------YE  313

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +   Q G P         + LHG +K   R +   RF       L  TDV ARGID   
Sbjct  314  SFRHLQPGIP--------LLHLHGRQKQGARMEITSRFTAAKQTCLFATDVVARGIDFPA  365

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            V +VI    P++   Y+HR+GR  R E  G A+  +   +E
Sbjct  366  VDWVIQADCPEDVDTYIHRVGRTARYESNGRAVLFLDPSEE  406


 Score = 57.8 bits (138),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 29/62 (47%), Positives = 42/62 (68%), Gaps = 0/62 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FSE+ +    A+ +E   +   TD+QA ++PL L G D+L AA+TGSGKT AF IPV++ 
Sbjct  53   FSELPLSVPTAEGLEIAHFQTLTDVQARAVPLALKGKDILGAAKTGSGKTLAFLIPVLEK  112

Query  64   VY  65
            +Y
Sbjct  113  LY  114


>sp|Q75C76|DBP4_EREGS ATP-dependent RNA helicase DBP4 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DBP4 PE=3 SV=2
Length=763

 Score = 91.3 bits (225),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 150/342 (44%), Gaps = 57/342 (17%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            AL++ P+RELA Q    + +  KY+        L+IGG   + ++  + + ++I++GTPG
Sbjct  116  ALVISPTRELAMQIYEVLVKIGKYMS---FSAGLVIGGKDVKFEMERV-SKINILIGTPG  171

Query  349  RL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            RL   +  +  LN S ++ LVLDEAD  L  G+   ++ + + +P         Q ++ S
Sbjct  172  RLLQHMDQSVGLNTSNLQILVLDEADRCLDMGFKKALDAIVSNLPPSR------QTLLFS  225

Query  408  ATLHS--FDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
            AT      D+ +LS  +  + T   + G    P + +    P         E L + +I+
Sbjct  226  ATQSQSLADLARLS--LADYKTVGTMDG----PSSKNKPATP---------ENLEQFYIQ  270

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                                 + + IL        IK H   + I+F  +      + + 
Sbjct  271  V-----------------ALPDKLDIL-----FSFIKSHLKSKMIVFLSSSKQVHFVYET  308

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
            F +   G        S + LHG +K   R + L++F +     L  TDV ARGID   V 
Sbjct  309  FRKMQPG-------ISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVD  361

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
            +VI    P++   Y+HR GR  R  + G ++ ++  ++E  +
Sbjct  362  WVIQTDCPEDVDTYIHRAGRSARYGKTGKSLLMLTPQEEDAF  403


 Score = 53.5 bits (127),  Expect = 6e-06, Method: Compositional matrix adjust.
 Identities = 26/62 (42%), Positives = 41/62 (66%), Gaps = 0/62 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F ++ +     + ++E  ++  TDIQ  +IP+ L G DVL AA+TGSGKT AF +PV++ 
Sbjct  43   FQDLPISSGTVKGLKEAAYIKMTDIQRAAIPVALKGHDVLGAAKTGSGKTLAFLVPVLEK  102

Query  64   VY  65
            +Y
Sbjct  103  LY  104


>sp|Q0JL73|RH26_ORYSJ DEAD-box ATP-dependent RNA helicase 26 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os01g0618500 PE=2 
SV=1
Length=536

 Score = 90.5 bits (223),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 94/338 (28%), Positives = 150/338 (44%), Gaps = 69/338 (20%)

Query  283  LPNAPKA--LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA-ARDQLSVLENG  339
            LP +P    L++ P+RELA Q     ++  KY  +  L   ++IGG    ++Q S+  N 
Sbjct  139  LPRSPSINLLVICPTRELANQVAAEARKLLKY--HRSLGVQVVIGGTKLPQEQRSMQSNP  196

Query  340  VDIVVGTPGRLDD-LVSTGKLN--LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTS  396
              I+V TPGRL D L +T   +  +  V+ LVLDEAD LL  G+   I ++   IP    
Sbjct  197  CQILVATPGRLKDHLENTPGFSNRIKGVKVLVLDEADRLLDMGFRRDIEKIIAFIP----  252

Query  397  DGKRLQVIVCSATLHSFDVKKLSEKIMH----FPTWVDLKGEDSVPDTVH--HVVVPVNP  450
              K  Q ++ SAT+   +V+++S   M     F   V  +G++     V   ++V P++ 
Sbjct  253  --KERQTLLFSATVPE-EVRQISHIAMKRGYKFINTVK-EGDEETHSQVSQMYMVAPLDL  308

Query  451  KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAI  510
                L+  L K HI  D                           +Y V           I
Sbjct  309  HFSILYNVL-KKHIAED--------------------------ADYKV-----------I  330

Query  511  IFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLI  570
            +FC T +    + +   Q          + +   +H  +    R +  + F+K     L+
Sbjct  331  VFCTTAMVTKLVAEVLSQL---------KLNIREIHSRKSQSARTKVSDEFRKSKGLILV  381

Query  571  CTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
             +DV+ARG+D   V  VI V LP +++ Y+HR+GR GR
Sbjct  382  SSDVSARGVDYPDVTLVIQVGLPADREQYIHRLGRTGR  419


 Score = 47.0 bits (110),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 23/61 (38%), Positives = 39/61 (64%), Gaps = 0/61 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +  V P   +A+++  +   T +Q  ++P+IL G DVL  A+TG+GKT AF +P I++
Sbjct  76   FDQCPVSPLSLKAIKDAGYEKMTQVQEATLPIILQGEDVLAKAKTGTGKTVAFLLPAIEL  135

Query  64   V  64
            +
Sbjct  136  L  136


>sp|A7TJS7|SPB4_VANPO ATP-dependent rRNA helicase SPB4 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 
21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=SPB4 PE=3 SV=1
Length=607

 Score = 90.9 bits (224),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 152/346 (44%), Gaps = 60/346 (17%)

Query  289  ALIVEPSRELAEQTLNNIKQF-KKYIDN--PKLRELLIIGGV-AARDQLS-VLENGVDIV  343
            +LIV P++ELA+Q  +  + F + Y +N  P   +LL+   V   RD +S  +EN   I+
Sbjct  86   SLIVSPTKELAKQIHSVFESFLEHYPENLYPIRSQLLVGTNVKTVRDDVSDFMENKPQIL  145

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            +GTPGR+ D +    +  S    ++LDEAD LL   +   +  + N +P+    G     
Sbjct  146  IGTPGRILDFLKIPSVKTSMCSMVILDEADRLLDVSFLKDMENIMNILPKQRRTG-----  200

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
             + SAT+ S     + +  +  P  V +  +   P ++                ++  + 
Sbjct  201  -LFSATITSAG-DNIFKTGLRNPVKVTVNSKSQAPSSL----------------KIDCAV  242

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF---CRTKIDCD  520
            + TD                         K E  +  I  +K  + I +   C +     
Sbjct  243  VETDK------------------------KLEQVISIINNYKFKKCIAYFPTCHSVTYFY  278

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG-DVRFLICTDVAARGI  579
            +  QY +++G   +    +     LHG  +   R + LE F +      L+ TDVAARGI
Sbjct  279  SFMQYLLKKGIIKE----EIQIYSLHGKLQTSARIKTLETFTETISNAVLLTTDVAARGI  334

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            DI  V  V+ +  P + + ++HR GR GRA ++G AI+ +   +E+
Sbjct  335  DIPDVDLVLQLDPPTDPEVFLHRCGRTGRANKLGKAITFLTPGREE  380


 Score = 47.8 bits (112),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 41/72 (57%), Gaps = 0/72 (0%)

Query  6   EMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVY  65
           E  + P I  AV+ M +   T +QA +IPL     DV++ + TGSGKT +F IP+ + + 
Sbjct  11  EYPIQPWIRSAVDVMGFENMTPVQAATIPLFARNKDVVVDSVTGSGKTVSFVIPIFEKIV  70

Query  66  ETLKDQQEGKKG  77
           +   +  + KKG
Sbjct  71  QEEANTTKMKKG  82


>sp|Q8NHQ9|DDX55_HUMAN ATP-dependent RNA helicase DDX55 OS=Homo 
sapiens OX=9606 GN=DDX55 PE=1 SV=3
Length=600

 Score = 90.5 bits (223),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 147/343 (43%), Gaps = 57/343 (17%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV-AARDQLSVLENGVDIVVGTP  347
            A+I+ P+RELA Q    +  F K+   P+  ++L IGG     D     + G +I+V TP
Sbjct  85   AIIITPTRELAIQIDEVLSHFTKHF--PEFSQILWIGGRNPGEDVERFKQQGGNIIVATP  142

Query  348  GRLDDLVSTGKLNL---SQVR---FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL  401
            GRL+D+       L   S VR    LVLDEAD LL  G+   IN +   +P+    G   
Sbjct  143  GRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFLPKQRRTG---  199

Query  402  QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK  461
               + SAT  + +V+ L    +  P  V +K +     +                    K
Sbjct  200  ---LFSAT-QTQEVENLVRAGLRNPVRVSVKEKGVAASSAQ------------------K  237

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
            +  R ++ +          + E +++ +  L+          HK ++ ++F  T   C  
Sbjct  238  TPSRLENYYMV------CKADEKFNQLVHFLRN---------HKQEKHLVFFST---CAC  279

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            +E Y    G   +        +C+HG  K ++R +    F+K     L+CTDV ARGIDI
Sbjct  280  VEYY----GKALEVLVKGVKIMCIHGKMK-YKRNKIFMEFRKLQSGILVCTDVMARGIDI  334

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
              V +V+    P     +VHR GR  R    G A+  +   +E
Sbjct  335  PEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLPMEE  377


 Score = 50.1 bits (118),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 40/67 (60%), Gaps = 3/67 (4%)

Query  11  PEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVY---ET  67
           P++  A+ E+ +   T +Q+ +IPL +   DV   A TGSGKT AF IP+++I+    E 
Sbjct  18  PQVLGALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREEK  77

Query  68  LKDQQEG  74
           LK  Q G
Sbjct  78  LKKSQVG  84


>sp|Q4WV71|DBP7_ASPFU ATP-dependent RNA helicase dbp7 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=dbp7 PE=3 SV=1
Length=758

 Score = 90.9 bits (224),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 100/371 (27%), Positives = 162/371 (44%), Gaps = 72/371 (19%)

Query  289  ALIVEPSRELAEQ---TLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            A+++ P+REL +Q    L N+ +   +I         +IGG   + + + L  G++I+V 
Sbjct  228  AIVLAPTRELCKQISVVLENLLRCAHWI-----VAGTVIGGEKKKSEKARLRKGLNILVA  282

Query  346  TPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN---------RMHNQIPQVT  395
            TPGRL D L +T  L++S VR+LVLDE D L+  G+ + I          +  ++IP + 
Sbjct  283  TPGRLADHLDNTQALDVSNVRWLVLDEGDRLMELGFEEEIQGIVKKLDARQRPSRIPGIP  342

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL  455
            +   R   I+CSATL    V+KL              GE S+ D VH   +  +P+ +  
Sbjct  343  A---RRTTILCSATL-KMSVQKL--------------GEISLKDAVH---IKADPEDEDE  381

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRT  515
              R  K+      V A+        + ++    +  L   +    +++  + +AIIF   
Sbjct  382  KARRSKAEESAYRVPAQLKQSYAVVAAKLR---LVTLTAFFKRTFMRKGSVMKAIIFVSC  438

Query  516  KIDCDNLEQYFIQQ-----GGGP---DKK---------------------GHQFSCVCLH  546
                D   + F ++     GG P   DK                       +  +   LH
Sbjct  439  ADSVDFHFEVFTRKQVKEDGGEPSDTDKSEEKPPSSPHGTIAPATAFSNPSNPVTLFRLH  498

Query  547  GDRKPHERKQNLERFKKG-DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR  605
            G    + R   L  F K  +   LICTDVA+RG+D+  V  V+        ++++HRIGR
Sbjct  499  GSLPQNVRTSTLGAFAKNKEASVLICTDVASRGLDLPNVDLVVEYDPAFSAEDHLHRIGR  558

Query  606  VGRAERMGLAI  616
              R  R G A+
Sbjct  559  TARVGRDGRAL  569


 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 29/89 (33%), Positives = 48/89 (54%), Gaps = 8/89 (9%)

Query  4    FSEMGVMPEIA-QAVEEMDWLLPTDIQAESIPLILGG-GDVLMAAETGSGKTGAFSIPVI  61
            F+ +G+ P +A   + +++   PT IQ  SI  +L   GD  + AETGSGKT A+ +P++
Sbjct  140  FTNLGLSPNLAAHLLTKLELKAPTAIQKASISQLLKEEGDAFIQAETGSGKTLAYLLPLV  199

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNK  90
            Q +          K G  T  TG  ++++
Sbjct  200  QRIMAL------SKPGAQTDATGQPIVHR  222


>sp|Q757I6|MAK5_EREGS ATP-dependent RNA helicase MAK5 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=MAK5 PE=3 SV=1
Length=752

 Score = 90.9 bits (224),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 121/512 (24%), Positives = 206/512 (40%), Gaps = 104/512 (20%)

Query  210  KDLGL-AFEIP--PHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            KD+GL   E P  P   N     A VL+            F  P +    ++ KA DG+ 
Sbjct  166  KDIGLDEAEAPELPSWTNTMKLSATVLQG------LSRLGFSNPTEIQLQSIPKALDGHD  219

Query  267  VKSQHSGNAQVTQTKFLP-----------NAPKALIVEPSRELAEQTLNNIKQFKKYI--  313
            +  + S  +  T    +P           + P  LI  P+RELA Q  +++++    +  
Sbjct  220  IMGKASTGSGKTLAYGIPILEGIIRDDTDSRPIGLIFTPTRELAHQVTDHLREVGALLVK  279

Query  314  DNPKLRELLIIGGVAARDQLSVLE--NGVDIVVGTPGRLDDLVSTGKL---NLSQVRFLV  368
             NP    + + GG++ + Q  +L+      +VV TPGR  +L+   +      ++V  LV
Sbjct  280  RNP-YSIMCLTGGLSIQKQERLLKYKGSARVVVATPGRFLELLEKDQTLIDRFAKVDTLV  338

Query  369  LDEADGLLSQGYSDFINRMHNQIPQVT--SDGKR--LQVIVCSATLHSFDVKKLSEKIMH  424
            LDEAD LL  G+ +   R+   + +    ++GK+   + ++ SAT       KLS     
Sbjct  339  LDEADRLLQDGHFEEFERILKHLSRARKFTNGKKHGWKTMIYSATFSLDYFNKLSN----  394

Query  425  FPTWVDLK---GEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANS  481
              +W  +K    E+ + + + H++  +  +        GK  I    +      +  +  
Sbjct  395  -TSWKKMKKAPSENEMEEVLKHLMTKIPFR--------GKPLI----IDTNPEQKVASQI  441

Query  482  PEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFS  541
             E   E +   +  Y    +  +     ++FC        L  Y             + S
Sbjct  442  KESLIECLPTERDLYVYYFVTLYP-GTTLVFCNAIDSVKKLNAYL---------HNLKIS  491

Query  542  CVCLHGDRKPHERKQNLERFKKGDVR--------FLICTDVAARGIDIHGVPYVINVTLP  593
               +H       R ++LE+F++   +         LI +DVAARG+DI G+ +VI+  LP
Sbjct  492  AFQIHSSMLQKNRLKSLEKFQEQAKKNQALNKPTVLIASDVAARGLDIPGIQHVIHYHLP  551

Query  594  DEKQNYVHRIGRVGRAERMGLAISLVATEK--------EKVWYHVCSSRGKGCYNTRLKE  645
                 Y+HR GR  RAE  G+A+++ + ++         +V      S+GK         
Sbjct  552  RSADVYIHRSGRTARAENEGVAVTICSPQEAMGPLRKLRRVLAGKAGSKGKR--------  603

Query  646  DGGCTIWYNEMQLLSEIEEHLNCTISQVEPDI  677
                  W NE+ LL             VEPDI
Sbjct  604  ------WQNEIALLP------------VEPDI  617


 Score = 48.1 bits (113),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 35/56 (63%), Gaps = 0/56 (0%)

Query  7    MGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            M +   + Q +  + +  PT+IQ +SIP  L G D++  A TGSGKT A+ IP+++
Sbjct  185  MKLSATVLQGLSRLGFSNPTEIQLQSIPKALDGHDIMGKASTGSGKTLAYGIPILE  240


>sp|P25808|SPB4_YEAST ATP-dependent rRNA helicase SPB4 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 
GN=SPB4 PE=1 SV=1
Length=606

 Score = 90.5 bits (223),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 93/379 (25%), Positives = 159/379 (42%), Gaps = 62/379 (16%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYI--DNPKLRELLIIGGVAA--RDQLS-VLENGVDIV  343
            +LI+ P+REL+ Q  + +  F ++   D   ++  L++G   A  RD +S  L N   I+
Sbjct  86   SLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQLLVGTNEATVRDDVSNFLRNRPQIL  145

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            +GTPGR+ D +    +  S    +V+DEAD LL   +     ++   +P+    G     
Sbjct  146  IGTPGRVLDFLQMPAVKTSACSMVVMDEADRLLDMSFIKDTEKILRLLPKQRRTG-----  200

Query  404  IVCSATLHSF--DVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK  461
             + SAT+ S   D+ K     +  P  + +  ++  P ++      VNP           
Sbjct  201  -LFSATMRSAGSDIFKTG---LRNPVRITVNSKNQAPSSLKLNYCVVNP-----------  245

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
                                    +E +++L     V  +  +K  + I++  T   C +
Sbjct  246  ------------------------AEKLQLL-----VSILNNYKFKKCIVYFPT---CVS  273

Query  522  LEQY--FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG-DVRFLICTDVAARG  578
            +  +  FIQ  G  +   ++     LHG  +   R + L  F        L  TDVAARG
Sbjct  274  VSYFYSFIQYLGKRNILVNEVEIFSLHGKLQTSARTKTLTAFTDSLSNSVLFTTDVAARG  333

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGC  638
            IDI  V  VI +  P     ++HR GR GRA R+G AI+ +   +E+ +      +    
Sbjct  334  IDIPDVDLVIQLDPPTNTDMFMHRCGRTGRANRVGKAITFLNEGREEDFIPFMQVKNVEL  393

Query  639  YNTRLKEDGGCTIWYNEMQ  657
                L+  G  T +Y + +
Sbjct  394  EELDLEVKGITTNFYEDFR  412


 Score = 50.4 bits (119),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 0/71 (0%)

Query  7   MGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYE  66
             ++P I   ++ M +   T +QA +IP++ G  DV++ + TGSGKT AF IPV++ V +
Sbjct  12  FSLLPWIRTGLDVMGFETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAAFVIPVLEKVVK  71

Query  67  TLKDQQEGKKG  77
              +  + KK 
Sbjct  72  EEANTSKFKKA  82


>sp|A7A237|SPB4_YEAS7 ATP-dependent rRNA helicase SPB4 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=SPB4 PE=3 
SV=1
Length=606

 Score = 90.5 bits (223),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 93/379 (25%), Positives = 159/379 (42%), Gaps = 62/379 (16%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYI--DNPKLRELLIIGGVAA--RDQLS-VLENGVDIV  343
            +LI+ P+REL+ Q  + +  F ++   D   ++  L++G   A  RD +S  L N   I+
Sbjct  86   SLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQLLVGTNEATVRDDVSNFLRNRPQIL  145

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            +GTPGR+ D +    +  S    +V+DEAD LL   +     ++   +P+    G     
Sbjct  146  IGTPGRVLDFLQMPAVKTSACSMVVMDEADRLLDMSFIKDTEKILRLLPKQRRTG-----  200

Query  404  IVCSATLHSF--DVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK  461
             + SAT+ S   D+ K     +  P  + +  ++  P ++      VNP           
Sbjct  201  -LFSATMRSAGSDIFKTG---LRNPVRITVNSKNQAPSSLKLNYCVVNP-----------  245

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
                                    +E +++L     V  +  +K  + I++  T   C +
Sbjct  246  ------------------------AEKLQLL-----VSILNNYKFKKCIVYFPT---CVS  273

Query  522  LEQY--FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG-DVRFLICTDVAARG  578
            +  +  FIQ  G  +   ++     LHG  +   R + L  F        L  TDVAARG
Sbjct  274  VSYFYSFIQYLGKRNILVNEVEIFSLHGKLQTSARTKTLTAFTDSLSNSVLFTTDVAARG  333

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGC  638
            IDI  V  VI +  P     ++HR GR GRA R+G AI+ +   +E+ +      +    
Sbjct  334  IDIPDVDLVIQLDPPTNTDMFMHRCGRTGRANRVGKAITFLNEGREEDFIPFMQVKNVEL  393

Query  639  YNTRLKEDGGCTIWYNEMQ  657
                L+  G  T +Y + +
Sbjct  394  EELDLEVKGITTNFYEDFR  412


 Score = 50.4 bits (119),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 0/71 (0%)

Query  7   MGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYE  66
             ++P I   ++ M +   T +QA +IP++ G  DV++ + TGSGKT AF IPV++ V +
Sbjct  12  FSLLPWIRTGLDVMGFETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAAFVIPVLEKVVK  71

Query  67  TLKDQQEGKKG  77
              +  + KK 
Sbjct  72  EEANTSKFKKA  82


>sp|P15424|MS116_YEAST ATP-dependent RNA helicase MSS116, mitochondrial 
OS=Saccharomyces cerevisiae (strain ATCC 204508 / 
S288c) OX=559292 GN=MSS116 PE=1 SV=1
Length=664

 Score = 90.5 bits (223),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 100/347 (29%), Positives = 159/347 (46%), Gaps = 63/347 (18%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRE---LLIIGGV---AARDQLSVLENGVD  341
            KA+IV P+R+LA Q    +K+      N  L++   + ++GG    AA ++++ L    +
Sbjct  182  KAVIVAPTRDLALQIEAEVKKIHDM--NYGLKKYACVSLVGGTDFRAAMNKMNKLR--PN  237

Query  342  IVVGTPGRLDDLVSTGKLNLSQVRFL---VLDEADGLLSQGYSDFINRMHNQIPQVTS-D  397
            IV+ TPGRL D++   K +    RF+   VLDEAD LL  G+ D +  +   + +  S  
Sbjct  238  IVIATPGRLIDVLE--KYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKS  295

Query  398  GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWE  457
               ++ ++ SATL    V+KL+  IM+    + L   D      H              E
Sbjct  296  ADNIKTLLFSATLDD-KVQKLANNIMNKKECLFLDTVDKNEPEAH--------------E  340

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD-QAIIFCRT-  515
            R+ +S + ++           ANS     E IK        + IKE   + +AIIF  T 
Sbjct  341  RIDQSVVISEKF---------ANSIFAAVEHIK--------KQIKERDSNYKAIIFAPTV  383

Query  516  ---KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICT  572
                  C  L+  F                +  HG    ++R   ++RFKK +   L+CT
Sbjct  384  KFTSFLCSILKNEF----------KKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT  433

Query  573  DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            DV ARG+D   V  V+ + +P E  NY+HRIGR  R+ + G ++  +
Sbjct  434  DVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFI  480


 Score = 43.5 bits (101),  Expect = 0.008, Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 3/75 (4%)

Query  1    MAAFSEMGVM-PEIAQAVEEMDWLLPTDIQAESIPLILGGGD--VLMAAETGSGKTGAFS  57
            + +  E GV+  EI +A+  M++   T +Q ++I  IL   D  V+  A+TG+GKT AF 
Sbjct  104  LDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFL  163

Query  58   IPVIQIVYETLKDQQ  72
            IP+ Q +  T  D Q
Sbjct  164  IPIFQHLINTKFDSQ  178


>sp|Q6FKS8|SPB4_CANGA ATP-dependent rRNA helicase SPB4 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=SPB4 PE=3 SV=1
Length=617

 Score = 90.1 bits (222),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 156/361 (43%), Gaps = 64/361 (18%)

Query  277  VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI--DNPKLRELLIIGG--VAARDQ  332
            +  +KF      +LI+ P+REL+ Q  N +  F ++   D   +R  L++G    + RD 
Sbjct  74   INNSKFKKGHFYSLILAPTRELSMQIQNVVSSFLEHYPEDQYPIRSQLVVGTNEKSVRDD  133

Query  333  L-SVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQI  391
            + ++L+    I++GTPGR+ D + +  +  S    +VLDEAD LL   +   + ++ N +
Sbjct  134  VNTLLDERPQILIGTPGRVLDFLQSPSVKTSSCGMVVLDEADRLLDVSFFKDVEKILNVL  193

Query  392  PQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPK  451
            P+    G      + SAT+        S   + F T +            + V + VN +
Sbjct  194  PKQRRTG------LFSATIS-------SAGTLIFKTGLR-----------NPVKITVNSQ  229

Query  452  TDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYA----VRAIKEHKMD  507
                                      G N+P   +    ++K E      +  +   +  
Sbjct  230  --------------------------GKNAPTTLNLFYSVMKPEEKLQNLIHIMNNIRFK  263

Query  508  QAIIFCRTKIDCDNLEQY--FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
            + I++  T +      QY  ++QQ     ++  Q   + +HG      R++ L  F +  
Sbjct  264  KCIVYFSTCVSVTFFYQYLKYLQQTDKTLREDLQ--VISIHGKLTTQSRRKALSTFTESL  321

Query  566  VR-FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
                L+ TDVAARGIDI  V  V+ +  P +   ++HR GR GRA ++G AI  +   +E
Sbjct  322  SDCILLTTDVAARGIDIPDVDLVLQIDPPTDADIFLHRCGRTGRANKIGRAIVFLNEGRE  381

Query  625  K  625
            +
Sbjct  382  E  382


 Score = 42.4 bits (98),  Expect = 0.017, Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 39/69 (57%), Gaps = 0/69 (0%)

Query  9   VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETL  68
           + P I +A+    +   T +QA +IP+     DV++ + TGSGKT AF IP+++ +    
Sbjct  14  LQPWIKKAINVSGFDSMTPVQASTIPMFAKNKDVVVESVTGSGKTIAFVIPILEKIISEG  73

Query  69  KDQQEGKKG  77
            +  + KKG
Sbjct  74  INNSKFKKG  82


>sp|Q5AF95|DBP4_CANAL ATP-dependent RNA helicase DBP4 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP4 
PE=3 SV=1
Length=765

 Score = 90.5 bits (223),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 89/343 (26%), Positives = 147/343 (43%), Gaps = 66/343 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            ALIV P+RELA Q    + +  KY         L+ GG   + +   +   ++I+VGTPG
Sbjct  123  ALIVSPTRELAVQIFEVLTKIGKY---NTFSAGLVTGGKDVQFEKERVSR-MNILVGTPG  178

Query  349  RLDD-LVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            R+   L     +  S ++ LVLDEAD  L  G+   I+ +   +P         Q ++ S
Sbjct  179  RISQHLNEAVGMETSNLQVLVLDEADRCLDMGFKKQIDNILGHLPTTR------QTLLFS  232

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSV---PDTV--HHVVVPVNPKTDRLWERLGKS  462
            AT  S  V  L+   +  P  + +  +  V   P+++  ++V VP++ K D LW  + KS
Sbjct  233  AT-QSESVNDLARLSLTNPNKIGVSSDQEVSATPESLEQYYVKVPLDEKLDVLWSFI-KS  290

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
            H+++                       KIL                 + F  +K      
Sbjct  291  HLKS-----------------------KIL-----------------VFFSSSKQVQYTY  310

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
            E +   Q G         S + L+G  K   R +   +F +     L  TD+ ARG+D  
Sbjct  311  ETFRTLQPG--------ISLMKLYGRHKQTSRLETTMKFSQAQHACLFATDIVARGLDFP  362

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
             + +V+ V  P++   YVHR+GR  R  R G ++ ++   +E+
Sbjct  363  AIDWVVQVDCPEDAATYVHRVGRSARFGRKGKSLLMLLPSEEE  405


 Score = 53.5 bits (127),  Expect = 7e-06, Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 0/62 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++ FS++ +     + ++E  ++  TDIQ ++IP+ L G D++  A TGSGKT AF IPV
Sbjct  47   VSQFSDLPITENTLKGLKEATFVSLTDIQKKTIPIALKGEDLMGTARTGSGKTLAFLIPV  106

Query  61   IQ  62
            I+
Sbjct  107  IE  108


>sp|Q750F8|SPB4_EREGS ATP-dependent rRNA helicase SPB4 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=SPB4 PE=3 SV=2
Length=599

 Score = 90.1 bits (222),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 142/345 (41%), Gaps = 58/345 (17%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPK--LRELLIIGG--VAARDQLSV-LENGVDIV  343
             +I+ P+RELA Q    I+ F  Y  + +  ++  L+IG    + RD ++  LE+   I+
Sbjct  86   TIIISPTRELASQIQGVIEAFLTYYPDGEYPIKSQLLIGSNTSSVRDDVAAFLEHRPQIL  145

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            VGTPGRL D +    +  S     +LDEAD LL   +   +  +   +P+    G     
Sbjct  146  VGTPGRLLDFLKMPNIKTSSCGAAILDEADKLLDMNFEKDVETILKMLPKQRRTG-LFSA  204

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
             V SA    F         M  P  V +K  +  P ++    + + P+            
Sbjct  205  TVSSAGTQVFKTG------MRNPVKVSVKTSNKAPSSLDINYIVIEPR------------  246

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                        +K +  +  +  ++  + I++  T   C  + 
Sbjct  247  ----------------------------MKLQLLLTLLNNYRYKKCIVYLPT---CIAVT  275

Query  524  QYF--IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR-FLICTDVAARGID  580
             ++  +Q     +K         LHG    + R + L+RF +   +  L+ TDVAARGID
Sbjct  276  YFYSILQHLAKLNKMDENLKLYSLHGKLLTNSRMKTLDRFTQELGKAVLLTTDVAARGID  335

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            I  +  V+ +  P +   ++HR GR GRA R G AI  +   +E+
Sbjct  336  IPDIDLVLQMDPPIDADIFLHRCGRAGRANRAGRAIVFLNQGREE  380


 Score = 50.4 bits (119),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 28/69 (41%), Positives = 41/69 (59%), Gaps = 0/69 (0%)

Query  9   VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETL  68
           + P I  AV+ M +   T +QA +IPL     DV++ + TGSGKT AF IPV++ V +  
Sbjct  14  LQPWIRTAVDAMGYETMTPVQASTIPLFARNKDVVVESVTGSGKTVAFVIPVLERVIQDD  73

Query  69  KDQQEGKKG  77
            +  + KKG
Sbjct  74  ANSSKLKKG  82


>sp|Q8K301|DDX52_MOUSE Probable ATP-dependent RNA helicase DDX52 
OS=Mus musculus OX=10090 GN=Ddx52 PE=2 SV=2
Length=598

 Score = 89.7 bits (221),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 146/348 (42%), Gaps = 57/348 (16%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLI-IGGVAARDQLSVLENGVDIVVGT  346
            +AL++ P+RELA Q     ++  K  +    R  +I    +AA+          DI+V T
Sbjct  237  RALVISPTRELASQIH---RELIKISEGTGFRIHMIHKAAIAAKKFGPKSSKKFDILVTT  293

Query  347  PGRLDDLVSTGK--LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            P RL  L+      ++L+ V +LV+DE+D L   G + F  ++ +     TS   +++  
Sbjct  294  PNRLIYLLKQDPPGIDLTNVEWLVVDESDKLFEDGKTGFREQLASIFLACTSP--KVRRA  351

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT  ++DV++  +  +     V +   +S  +TV   ++ V  +T +L         
Sbjct  352  MFSATF-AYDVEQWCKLNLDNVVSVSIGARNSAVETVEQELLFVGSETGKL---------  401

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                +  ++  + G   P                           ++F ++      L  
Sbjct  402  ----LAMRELVKKGFKPP--------------------------VLVFVQSIERAKELFH  431

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
              I +G   D          +H +R   +R   +  F+ G +  LICT + ARGID  GV
Sbjct  432  ELIYEGINVD---------VIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGV  482

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
              VIN   P     Y+HRIGR GRA   G A++    + + +   V +
Sbjct  483  NLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTEDDKPLLRSVAN  530


 Score = 50.4 bits (119),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 38/56 (68%), Gaps = 0/56 (0%)

Query  6    EMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            E  +   + Q + +  + +PT IQ ++IP++L G ++L +A TGSGKT AFSIP++
Sbjct  170  EYKINSRLLQNILDAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPIL  225


>sp|Q0UG00|MS116_PHANO ATP-dependent RNA helicase MSS116, mitochondrial 
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 
/ FGSC 10173) OX=321614 GN=MSS116 PE=3 SV=1
Length=550

 Score = 89.4 bits (220),  Expect = 3e-17, Method: Compositional matrix adjust.
 Identities = 98/352 (28%), Positives = 149/352 (42%), Gaps = 63/352 (18%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG-VDIVVGTPG  348
            L+V P+RELA Q           +   K+      GG +    L    NG   I+V TPG
Sbjct  148  LVVCPTRELALQIAKECNGVTACLPR-KMECHTAFGGTSRASNLKAFLNGNPTILVATPG  206

Query  349  RLDDLVSTGKLN--LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            RLDD++    +    + ++ +VLDEAD +L  G++  + ++  +IP   SDG   Q +  
Sbjct  207  RLDDILGEEHVRERFTHLKTVVLDEADQMLDAGFAPAVKKILRRIPP-KSDG--WQGMCF  263

Query  407  SATL--HSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            SATL     D+ K    I+ FP +  L   D  P+ V        P  +R+         
Sbjct  264  SATLPKEVLDIAK----IVLFPGFTHLTTVD--PNEV--------PTHERV---------  300

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI--KEHKMD----QAIIFCRTKID  518
                             P+ +     + +   A+ A+  +EHK D    +AI+F  T   
Sbjct  301  -----------------PQYFLSVPNVGQTFAALSALIQEEHKQDPTDFKAIVFGTTANG  343

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
               L  Y + +   P     QF    LH       R +   +FK+     L  +DV  RG
Sbjct  344  VGLL--YDLYKHALP-----QFRVFELHSRMSQPMRTRTTAQFKEATSGILFASDVVGRG  396

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
            +D   V  V+ + LP   + YVHR+GR  RA + G A+ LV  EKE  +  +
Sbjct  397  MDFPNVGLVVQLGLPSSTEQYVHRVGRTARAGKDGRAV-LVLFEKEAFFPRI  447


>sp|Q2GZU7|DBP7_CHAGB ATP-dependent RNA helicase DBP7 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=DBP7 PE=3 SV=1
Length=806

 Score = 90.1 bits (222),  Expect = 3e-17, Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 154/370 (42%), Gaps = 71/370 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            A+I+ P+REL +Q    +++  +    P L    +IGG + + + + +  GV+I++ TPG
Sbjct  229  AIIMAPTRELCKQISVVLEKVLRCA--PWLVCTTVIGGESKKSEKARIRKGVNILIATPG  286

Query  349  RL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM-----HNQIPQVTSDG----  398
            RL D L +T  LN+  VR+LVLDE D ++  G+ D I  +      +++ +V ++G    
Sbjct  287  RLADHLDNTKVLNVGTVRWLVLDEGDRMMEMGFEDDIKTIVGKIRADKLEKVNAEGVVLD  346

Query  399  ----KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDR  454
                 R   ++CSAT+   +V+KL              GE S+ D +H +        D 
Sbjct  347  GVLPSRRVTVLCSATM-KMNVQKL--------------GEISLEDAIHIMAAKSESDGDA  391

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF--  512
                   S ++   +      R            I +LK  +A R      + +AIIF  
Sbjct  392  DAVFAAPSQLKQSCIVTPAKLR--------LVTLIALLKSTFARRG----SVMKAIIFIS  439

Query  513  CRTKI--------DCDNLEQYFIQQGGGPDKKGHQFSCVC-----------------LHG  547
            C   +        D   +E          D+  H  + V                  LHG
Sbjct  440  CADSVDFHYQLLKDTKAVEPPTPDSSSTKDRNPHTDTTVARAAYITSPANPKVMLHKLHG  499

Query  548  DRKPHERKQNLERFKK-GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRV  606
                  R   L  F    D   LI TD+++RG+D+  V  VI         ++VHRIGR 
Sbjct  500  SLAQPVRSATLNAFSACKDPAVLITTDISSRGLDVPAVDLVIEYDPAFAVPDHVHRIGRT  559

Query  607  GRAERMGLAI  616
             RA R G A+
Sbjct  560  ARAGRAGKAV  569


 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 27/80 (34%), Positives = 45/80 (56%), Gaps = 3/80 (4%)

Query  4    FSEMGVMPEIAQAVE-EMDWLLPTDIQAESIP-LILGGGDVLMAAETGSGKTGAFSIPVI  61
            F  +GV   +AQ +  +++   PT IQ  ++P LI G  D  + AETGSGKT A+ +P++
Sbjct  143  FHSLGVSRRVAQHLATKLEMKAPTAIQKNTVPQLINGDSDAFLQAETGSGKTLAYLLPIV  202

Query  62   QIVYETLKDQQEGKKGKTTI  81
              +  +L   ++G    T +
Sbjct  203  HRIM-SLSLNEDGTPKDTKV  221


>sp|Q8SR01|DBP4_ENCCU ATP-dependent RNA helicase DBP4 OS=Encephalitozoon 
cuniculi (strain GB-M1) OX=284813 GN=DBP4 PE=3 SV=2
Length=449

 Score = 88.6 bits (218),  Expect = 3e-17, Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 141/338 (42%), Gaps = 61/338 (18%)

Query  291  IVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRL  350
            ++ P+RELA Q  + + +  KY     L   LI+GG+ A D+L  + N ++I+V TPGRL
Sbjct  78   VITPTRELALQIFDVLSRIAKY---TVLSTGLIMGGLEAEDELLKV-NQMNILVCTPGRL  133

Query  351  -DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSAT  409
               L     L+ + V+ L+LDEAD ++  G+ + +  +   IPQ      + Q ++ SAT
Sbjct  134  LQHLQENPYLSTANVQILILDEADKMIEMGFKEVLEDILEYIPQ------KKQTLLFSAT  187

Query  410  LHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDV  469
              +   + L    +  P  + +  E+  P  +                      +RT D 
Sbjct  188  PKASTARILK---LEDPRIISIYKEEGFPSQLRQYFY----------------MMRTGDK  228

Query  470  HAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQ  529
                +T  G+N PE        +KG       KE K    ++F R K+            
Sbjct  229  INYLHTFIGSN-PE--------VKGIVFFSTCKEVKF-HCLLFERLKL------------  266

Query  530  GGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVIN  589
                     +    CL G     +R    +RF K     L CTD+ +RG+D   V  VI 
Sbjct  267  ---------RNRIFCLSGGMSQKQRIDVFKRFVKEKNGILFCTDLGSRGLDFPKVDVVIQ  317

Query  590  VTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
               P   + YVHR+GR  R    G +   +   +EK+ 
Sbjct  318  YDCPCNVETYVHRVGRTARNSERGESYVYLVHGEEKLL  355


 Score = 42.7 bits (99),  Expect = 0.010, Method: Compositional matrix adjust.
 Identities = 18/59 (31%), Positives = 37/59 (63%), Gaps = 0/59 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           F ++ +   I + + E  ++   ++Q + IP+ L G D++ +++TG+GKT AF +P +Q
Sbjct  3   FEDLKIDQRIEKGLRENGFVSMKEVQQKVIPMALEGHDIIGSSQTGTGKTLAFLVPTLQ  61


>sp|Q03532|HAS1_YEAST ATP-dependent RNA helicase HAS1 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=HAS1 
PE=1 SV=1
Length=505

 Score = 89.0 bits (219),  Expect = 3e-17, Method: Compositional matrix adjust.
 Identities = 79/333 (24%), Positives = 151/333 (45%), Gaps = 57/333 (17%)

Query  281  KFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
            KF P N    +++ P+RELA Q     ++  ++         ++IGG   R +   L  G
Sbjct  108  KFKPRNGTGIIVITPTRELALQIFGVARELMEFHSQ---TFGIVIGGANRRQEAEKLMKG  164

Query  340  VDIVVGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
            V++++ TPGRL D L +T       ++ L++DEAD +L  G+ D + ++   +P   ++ 
Sbjct  165  VNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILP---NED  221

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER  458
            ++  +   + T    D+ ++S  +   P +++                 V P+TD     
Sbjct  222  RQSMLFSATQTTKVEDLARIS--LRPGPLFIN-----------------VVPETD-----  257

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
                          ++T  G     +  ++ K     ++   +K ++  + I+F  +   
Sbjct  258  --------------NSTADGLEQGYVVCDSDKRFLLLFSF--LKRNQKKKIIVFLSS---  298

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
            C+++ +Y+ +     D        + LHG +K  +R      F   +   LICTDVAARG
Sbjct  299  CNSV-KYYAELLNYID-----LPVLELHGKQKQQKRTNTFFEFCNAERGILICTDVAARG  352

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
            +DI  V ++I    PD+ ++Y+HR+GR  R  +
Sbjct  353  LDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTK  385


 Score = 58.5 bits (140),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 42/62 (68%), Gaps = 0/62 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F E+ +     +A+E+M +   T +QA +IP +L G DVL AA+TGSGKT AF IP I++
Sbjct  44   FEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEL  103

Query  64   VY  65
            ++
Sbjct  104  LH  105


>sp|Q6BP45|ROK1_DEBHA ATP-dependent RNA helicase ROK1 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=ROK1 PE=3 SV=2
Length=550

 Score = 89.4 bits (220),  Expect = 3e-17, Method: Compositional matrix adjust.
 Identities = 46/122 (38%), Positives = 67/122 (55%), Gaps = 8/122 (7%)

Query  544  CLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI  603
             +H +R P +R + ++RFK GD+  LI TDV ARG+D  GV  VIN  +P   Q YVHRI
Sbjct  390  VIHAERTPKQRDEVIKRFKSGDIWVLITTDVIARGVDFKGVNLVINYDVPQSAQAYVHRI  449

Query  604  GRVGRAERMGLAISLVATEKEKVWYHVCS-SRGKGCYNTRLKEDGGCTIWYNEMQLLSEI  662
            GR GR  + G A++    E +K    + +  +  GC       + G + W  +M  LS+ 
Sbjct  450  GRTGRGGKAGKAVTFFTKEDDKAVKPIINVMKQSGC-------ESGYSGWLEDMHKLSKN  502

Query  663  EE  664
            E+
Sbjct  503  EK  504


 Score = 52.0 bits (123),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 43/162 (27%), Positives = 83/162 (51%), Gaps = 14/162 (9%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG-VDIVVGT  346
            + LI+ P+ ELA Q    +    K     K++  ++   +A +    ++ +   DI+V T
Sbjct  189  RGLIISPTNELAVQIFQELNTMTK---GKKMKIGILSKQLANKINNKIINSSKYDILVST  245

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD--GKRLQVI  404
            P RL D +    ++LS+V  LV+DE D L  QG+ +       Q  ++ S+    +L+  
Sbjct  246  PLRLIDSIKNETISLSKVEQLVIDETDKLFDQGFVE-------QTDEILSNCTNTKLRKS  298

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVV  446
            + SAT+ S  V+++++ IM  P  V +  +++  +T+   +V
Sbjct  299  MFSATIPS-GVEEMAQSIMKDPIRVIIGHKEAASNTIEQKLV  339


 Score = 49.3 bits (116),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 2/83 (2%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKD-QQEGKKGKTTIKT  83
            PT IQ E+IP+ L G D++  A TGSGKT AF IP++Q + ++  + +  G +G     T
Sbjct  137  PTPIQDEAIPISLEGRDLIACAPTGSGKTLAFLIPLVQTILQSNPNVKNYGIRGLIISPT  196

Query  84   GASVLNKWQ-MNPYDRGSAFAIG  105
                +  +Q +N   +G    IG
Sbjct  197  NELAVQIFQELNTMTKGKKMKIG  219


>sp|Q6CK32|DBP7_KLULA ATP-dependent RNA helicase DBP7 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP7 PE=3 SV=1
Length=740

 Score = 89.7 bits (221),  Expect = 3e-17, Method: Compositional matrix adjust.
 Identities = 94/349 (27%), Positives = 150/349 (43%), Gaps = 45/349 (13%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            AL+V P+RELA Q      +  +      L   L+IGG   + + + L  G + ++GTPG
Sbjct  228  ALVVTPTRELANQIYQVTSELAQCCHF--LVPCLLIGGERKKSEKARLRKGANFIIGTPG  285

Query  349  RLDDLVSTGKLNLSQ----VRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG------  398
            R+ D +   K+   Q    +R++VLDE D L+  G+ + +  + N I  +  D       
Sbjct  286  RVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKL  345

Query  399  -KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED----SVPDTVHHVVVPVNPKTD  453
             KR+  ++CSAT+   +V KL    +     +    +     +VPD +   +V V PK  
Sbjct  346  PKRILHVLCSATVKG-NVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKL-  403

Query  454  RLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE--HK---MDQ  508
            RL   L  S       H K+ ++       ++      +   Y V +  +  H+    D 
Sbjct  404  RLVT-LAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDT  462

Query  509  AIIFCR--TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF-----  561
            A +  +  + + C N            D       C  LHG      R   L+ F     
Sbjct  463  ARLLTKGNSILPCFN------------DTDDPNVICYKLHGSLSQQTRTATLKHFATNND  510

Query  562  -KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA  609
              KG    L CTDVA+RG+D+  V  VI +  P   ++++HRIGR  RA
Sbjct  511  ATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARA  559


 Score = 37.0 bits (84),  Expect = 0.73, Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 25/41 (61%), Gaps = 1/41 (2%)

Query  25   PTDIQAESIPLILGG-GDVLMAAETGSGKTGAFSIPVIQIV  64
            PT IQ   IP  L    D+ + A+TGSGKT AF +P+ Q +
Sbjct  173  PTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSI  213


>sp|Q3SZ40|DDX56_BOVIN Probable ATP-dependent RNA helicase DDX56 
OS=Bos taurus OX=9913 GN=DDX56 PE=2 SV=1
Length=546

 Score = 89.0 bits (219),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 97/360 (27%), Positives = 155/360 (43%), Gaps = 61/360 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARD---QLSVLENGVD  341
             A +AL++ P++ELA Q  + I+Q   Y      R++ +    AA D   Q +VL    D
Sbjct  81   QAVRALVLVPTKELARQAQSMIQQLAAYCA----RDIRVANVSAAEDSASQRAVLMEKPD  136

Query  342  IVVGTPGRLDDLVSTGKLNL-SQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR  400
            +VVGTP R+ + +    L L   +  LV+DEAD L S G+ + +  +   +P++      
Sbjct  137  VVVGTPSRILNHLQQDNLKLRDSMELLVVDEADLLFSFGFEEELKSLLCHLPRI------  190

Query  401  LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK-GEDSVPDTVHHVVVPVNPKTDRLWERL  459
             Q  + SAT +  DV+ L E ++H P  + L+  +   PD +    V    + D+     
Sbjct  191  YQAFLMSATFNE-DVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLY  249

Query  460  ---------GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH---KMD  507
                     GKS +  + +      R      E +S    +L GE  +R+ + H   + +
Sbjct  250  ALLKLSLIRGKSLLFVNTLERSYRLRLFL---EQFSIPACVLNGELPLRS-RCHIISQFN  305

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
            Q    C    D + L         GP  KG                R +  +R K  D  
Sbjct  306  QGFYDCVIATDAEVL---------GPPVKGKH--------------RGKGPKRDKASDPE  342

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV-ATEKEKV  626
              +     ARGID H V  V+N  LP   + Y+HR GR  RA   G+ ++ V  TE+ ++
Sbjct  343  AGV-----ARGIDFHHVCAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSQL  397


 Score = 63.2 bits (152),  Expect = 6e-09, Method: Compositional matrix adjust.
 Identities = 29/61 (48%), Positives = 42/61 (69%), Gaps = 0/61 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F  MG+   + QAV ++ W  PT IQ ++IPL L G D+L  A TGSGKT A++IP++Q+
Sbjct  9   FEHMGLDHRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL  68

Query  64  V  64
           +
Sbjct  69  L  69


>sp|A5E2Z9|HAS1_LODEL ATP-dependent RNA helicase HAS1 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=HAS1 PE=3 SV=1
Length=559

 Score = 89.0 bits (219),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 143/330 (43%), Gaps = 66/330 (20%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N    +I+ P+RELA Q     +Q  +Y         ++IGG   R + + L  GV+++V
Sbjct  164  NGTAVIIITPTRELALQIFGVARQLMEYHSQTCG---IVIGGADRRQEATKLAKGVNLLV  220

Query  345  GTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
             TPGRL D L +T       ++ LV+DEAD +L  G+ + + ++   +P   ++ ++  +
Sbjct  221  ATPGRLLDHLKNTQGFVFLNLKALVIDEADRILEIGFEEEMKQIIKILP---NEDRQTML  277

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
               + T    D+ ++S +                P  ++  VVP                
Sbjct  278  FSATQTTKVEDLARISLR----------------PGPLYINVVP----------------  305

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                DV   D    G    +  S+   +L   +  R IK+    + I+F  +   C++++
Sbjct  306  --EKDVSTADGLEQGYVVCD--SDKRFLLLFSFLKRNIKK----KIIVFLSS---CNSVK  354

Query  524  QY-----FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
             Y     +I               + LHG +K  +R      F       L+CTDVAARG
Sbjct  355  FYSELLNYID-----------LPVLDLHGKQKQQKRTNTFFEFCNAKQGILVCTDVAARG  403

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
            +DI  V ++I    PD+ ++Y+HR+GR  R
Sbjct  404  LDIPAVDWIIQFDPPDDPRDYIHRVGRTAR  433


 Score = 55.1 bits (131),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 39/51 (76%), Gaps = 0/51 (0%)

Query  15   QAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVY  65
            +A++EM +   T +QA++IP +L G DVL AA+TGSGKT AF +P ++++Y
Sbjct  106  KAIKEMGFQKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLLPAVELLY  156


>sp|Q8SR49|SPB4_ENCCU ATP-dependent rRNA helicase SPB4 OS=Encephalitozoon 
cuniculi (strain GB-M1) OX=284813 GN=SPB4 PE=3 SV=1
Length=463

 Score = 88.2 bits (217),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 90/348 (26%), Positives = 144/348 (41%), Gaps = 72/348 (21%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            A+++ P+RELA Q    I++     D   ++    IGG++  +    ++    I VGTPG
Sbjct  79   AVVITPTRELALQ----IREVAGLFD---VKCECFIGGMSIEEDYKRMKEEFSIAVGTPG  131

Query  349  RLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSA  408
            RL ++V       S +  LVLDEAD LL  G+ + + ++  ++P+    G      + SA
Sbjct  132  RLLEIVGKETKKFSSLSHLVLDEADKLLGFGFEEKLMQLLAKLPRNRVTG------LFSA  185

Query  409  TLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDD  468
            T +   V KLS   +  P  +++ G + +P  + ++VV    K   L +           
Sbjct  186  TRND-SVDKLSRVFLRNPVSINV-GNNEMPVALEYIVVSPMEKLLVLMD-----------  232

Query  469  VHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQ  528
                                  I+ G             + I+F  T  + D       +
Sbjct  233  ----------------------IVTGR------------RCIVFFATCSEVDFFSGLVSR  258

Query  529  QGGGPDKKGHQFSCVC-LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
             G         F  +C +HG     ER +  E F + D   L CTDVAARGID  GV  V
Sbjct  259  AG---------FGNICKIHGKISQDERNRVYEEFFQRD-GLLFCTDVAARGIDFRGVDLV  308

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRG  635
            ++  +P E  + VHR GR  R    G ++ L     E+ +      +G
Sbjct  309  VHFDVPKEYSSIVHRSGRTARNGSKGESV-LFVMPNERAYVEFLKLKG  355


 Score = 43.5 bits (101),  Expect = 0.006, Method: Compositional matrix adjust.
 Identities = 22/69 (32%), Positives = 41/69 (59%), Gaps = 3/69 (4%)

Query  13  IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQ  72
           + + +EE  +   T++Q + IP +L G DV++ + TG+GKT AF  P++  +Y+    + 
Sbjct  15  LKKEIEENGFGKMTEVQLKCIPEVLKGKDVVVQSPTGTGKTMAFLAPILSCIYD---GKG  71

Query  73  EGKKGKTTI  81
            G+ G T +
Sbjct  72  RGRPGVTAV  80


>sp|A3LT90|MRH4_PICST ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 
6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=MRH4 PE=3 SV=2
Length=593

 Score = 89.0 bits (219),  Expect = 5e-17, Method: Compositional matrix adjust.
 Identities = 102/403 (25%), Positives = 173/403 (43%), Gaps = 93/403 (23%)

Query  268  KSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTL------NNIK-QFKKYIDNPKLRE  320
            K + S NAQ+          K++++ P+ +L EQ        N+IK   +K   N +L+E
Sbjct  226  KYRASRNAQMV---------KSVVLVPTHDLVEQVYSTLERANSIKFDVEKIGANSRLKE  276

Query  321  LLIIGGVAARDQLSVLENG----------------VDIVVGTPGRLDDLVSTGKLN----  360
             L +        LS+L+ G                VD++V TPG+L  L     +N    
Sbjct  277  FLQLPEQNGSLNLSILKWGSGEAHKKLFDRCLKGRVDVLVTTPGKLASLSKLQNVNRPYR  336

Query  361  -LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLS  419
             L+ V + VLDEAD L+ + +      +   +P +    K   +I+CSAT+     K+  
Sbjct  337  FLNHVEYCVLDEADTLMDESW------IETTMPVIEKFKKLRDLIICSATIP----KRFQ  386

Query  420  EKIMH-FPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPG  478
              +   FPT      +DS+ + V        P   +L +++  S I ++           
Sbjct  387  TTLNRIFPT------DDSIINIV-------TPSLHKLPKQIKVSVIDSEL----------  423

Query  479  ANSPEMWSEAIKILKGEYAVR--AIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKK  536
              SP   S+   + +  YA+     +   + + I+F   K   ++L    +      +K 
Sbjct  424  --SPYHGSKTRALAQALYAITRDGTEPGLVKRVIVFVNKKESVNSLVDTLV------NKF  475

Query  537  GHQFSCVC-LHGDRKPHERKQNLERFKK-----------GDVRFLICTDVAARGIDIHGV  584
             H+   V  + G+ KP ER + LE F K             ++ L+ +D+ ARG++  G+
Sbjct  476  SHRPEDVIGITGEDKPEERSEKLEPFIKPAESIEEDPLNSKIKVLVTSDLMARGVNFVGI  535

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
              VI + +P    + VHRIGR GR  + G  I +V  +K K W
Sbjct  536  KNVIIMDIPHNSVDLVHRIGRTGRMNQSGRVILIVDKKKNKAW  578


>sp|A2Q9T6|HAS1_ASPNC ATP-dependent RNA helicase has1 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=has1 PE=3 SV=1
Length=606

 Score = 88.6 bits (218),  Expect = 6e-17, Method: Compositional matrix adjust.
 Identities = 90/337 (27%), Positives = 143/337 (42%), Gaps = 63/337 (19%)

Query  277  VTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
            ++  +F P N    L+V P+RELA Q     ++   +         ++IGG   R +   
Sbjct  187  LSALRFKPRNGTGVLVVSPTRELALQIFGVARELMAHHSQTYG---IVIGGANRRAEAEK  243

Query  336  LENGVDIVVGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV  394
            L  GV++++ TPGRL D L +T       ++ LV+DEAD +L  G+ D + ++   +P  
Sbjct  244  LTKGVNLLIATPGRLLDHLQNTPGFVFKNLKTLVIDEADRILEVGFEDEMRQIVKILP--  301

Query  395  TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDR  454
                +  Q ++ SAT  +  V+ L+                                  R
Sbjct  302  ---SEERQTMLFSAT-QTTKVEDLA----------------------------------R  323

Query  455  LWERLGKSHIRTDDVHAKD-NTRPGANSPEMWSEAIK--ILKGEYAVRAIKEHKMDQAII  511
            +  R G  +I  D  H K+ +T  G     +  EA K  +L   +  R +K     + II
Sbjct  324  ISLRPGPLYINVD--HRKEHSTVEGLEQGYVICEADKRFLLLFSFLKRNLK-----KKII  376

Query  512  FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLIC  571
               +  +C       +     P         + LHG +K  +R      F       LIC
Sbjct  377  VFFSSCNCVKYHAELLNYIDLP--------VLELHGKQKQQKRTNTFFEFCNAKQGTLIC  428

Query  572  TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
            TDVAARG+DI  V ++I    PD+ ++YVHR+GR  R
Sbjct  429  TDVAARGLDIPAVDWIIQFDPPDDTRDYVHRVGRTAR  465


 Score = 53.9 bits (128),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 42/61 (69%), Gaps = 0/61 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+E+ +  +  + +++M +   T+IQ  +IP +L G DVL AA+TGSGKT +F IP +++
Sbjct  127  FTELNLSEKTMKGIQDMGFETMTEIQQRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVEM  186

Query  64   V  64
            +
Sbjct  187  L  187


>sp|Q7S873|DBP7_NEUCR ATP-dependent RNA helicase dbp-7 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=dbp-7 PE=3 SV=1
Length=814

 Score = 89.0 bits (219),  Expect = 6e-17, Method: Compositional matrix adjust.
 Identities = 103/390 (26%), Positives = 159/390 (41%), Gaps = 76/390 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            A+I+ P+REL +Q    +++  +    P L    +IGG + + + + +  GV+I++ TPG
Sbjct  233  AIILAPTRELCKQIAVVLEKVLRCA--PWLVCTTVIGGESKKSEKARIRKGVNILIATPG  290

Query  349  RLDD-LVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            RL D L +T  L++  VR+LVLDE D ++  G+ D I  +  +I   T   K  + +V  
Sbjct  291  RLTDHLDNTKVLDVGTVRWLVLDEGDRMMEMGFEDDIKTIVGKIRAGTLQKKNAEGVVLD  350

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
              L S  V  L    M     V   GE S+ D VH                  KS +  D
Sbjct  351  GVLPSRRVTVLCSATMKM--NVQKLGEISLEDAVHITA--------------SKSDMEKD  394

Query  468  DVHAKDNTRPGANSPEMWSEA-------------IKILKGEYAVRAIKEHKMDQAIIFCR  514
                   T    ++P    +A             I +LK  +A    ++  + +AIIF  
Sbjct  395  AETGAVET--AFSAPAQLKQAAIVTPAKLRLVTLIALLKSTFA----RKGSVMKAIIF--  446

Query  515  TKIDCDNLEQYFIQ---------------QGGGPDKKG-HQFSCVC--------------  544
              I C +   Y  +               +G  P K   H  S V               
Sbjct  447  --ISCADSVDYHFELLKSTTPRAEPEPKPEGEAPTKPNIHIESTVAPATYITSPANPTVM  504

Query  545  ---LHGDRKPHERKQNLERFKK-GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600
               LHG      R   L+ F +  D   LI TD+++RG+D+  V  VI         ++V
Sbjct  505  LHKLHGSLAQPVRSATLKAFSECKDPAVLITTDISSRGLDVPAVELVIEYDPAFAVPDHV  564

Query  601  HRIGRVGRAERMGLAISLVATEKEKVWYHV  630
            HRIGR  RA R G A+  +    E+ +  +
Sbjct  565  HRIGRTARAGRAGKAVLFLLPGSEEGYISI  594


 Score = 38.9 bits (89),  Expect = 0.20, Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 43/80 (54%), Gaps = 3/80 (4%)

Query  4    FSEMGVMPEIAQAVE-EMDWLLPTDIQAESIP-LILGGGDVLMAAETGSGKTGAFSIPVI  61
            F  +G+   ++Q +  +++   PT IQ  +IP L+    D  + AETGSGKT A+ +P++
Sbjct  147  FLSLGLSRRVSQHLATKLEMKAPTAIQKNTIPQLVKEDSDAFLQAETGSGKTLAYLLPIV  206

Query  62   QIVYETLKDQQEGKKGKTTI  81
              +   L   ++G    T +
Sbjct  207  HRIL-ALSHNEDGTPKTTKV  225


>sp|Q9NUL7|DDX28_HUMAN Probable ATP-dependent RNA helicase DDX28 
OS=Homo sapiens OX=9606 GN=DDX28 PE=1 SV=2
Length=540

 Score = 88.2 bits (217),  Expect = 6e-17, Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 155/359 (43%), Gaps = 83/359 (23%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII--------GGVAARDQLSVLE  337
            AP+ L++ PSRELA+Q         + +  P  R L ++        G    R QLS  +
Sbjct  203  APRGLVLVPSRELAQQV--------RAVAQPLGRSLGLLVRDLEGGHGMRRIRLQLS-RQ  253

Query  338  NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM--HNQIPQVT  395
               D++V TPG L   + +  ++L Q+ FLVLDEAD LL + + + ++ +   + I +  
Sbjct  254  PSADVLVATPGALWKALKSRLISLEQLSFLVLDEADTLLDESFLELVDYILEKSHIAEGP  313

Query  396  SD-----GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWV-DLKGEDSVPDTVH-------  442
            +D       + Q+++  AT               FP  V  L  + + PD V        
Sbjct  314  ADLEDPFNPKAQLVLVGAT---------------FPEGVGQLLNKVASPDAVTTITSSKL  358

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
            H ++P               H++   +  K     GA+     +E + ILK  +  RA +
Sbjct  359  HCIMP---------------HVKQTFLRLK-----GADK---VAELVHILK--HRDRAER  393

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
                   ++FC +    + L  Y +          H+   + L G      R    + F+
Sbjct  394  TGPSGTVLVFCNSSSTVNWLG-YILDD--------HKIQHLRLQGQMPALMRVGIFQSFQ  444

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR--AERMGLAISLV  619
            K     L+CTD+A+RG+D  GV  V+N   P   Q+Y+HR GRVGR  +E  G  IS V
Sbjct  445  KSSRDILLCTDIASRGLDSTGVELVVNYDFPPTLQDYIHRAGRVGRVGSEVPGTVISFV  503


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 39/56 (70%), Gaps = 2/56 (4%)

Query  3    AFSEMGVMPEIAQAVEEM--DWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
            +F+++G+ P +  A++E   + + PT +Q+ +IP +L G  V+ AAETGSGKT ++
Sbjct  127  SFADLGLEPRVLHALQEAAPEVVQPTTVQSSTIPSLLRGRHVVCAAETGSGKTLSY  182


>sp|Q9Y7C4|ROK1_CANAL ATP-dependent RNA helicase CHR1 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=CHR1 
PE=3 SV=2
Length=578

 Score = 88.2 bits (217),  Expect = 7e-17, Method: Compositional matrix adjust.
 Identities = 46/122 (38%), Positives = 68/122 (56%), Gaps = 8/122 (7%)

Query  544  CLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI  603
             +H +R P +R++ ++RFK GD+  LI TDV ARG+D  GV  VIN  +P   Q YVHRI
Sbjct  407  VIHAERTPKQREEVIKRFKNGDIWVLITTDVLARGVDFKGVNLVINYDVPQSAQAYVHRI  466

Query  604  GRVGRAERMGLAISLVATEKEKVWYHVCS-SRGKGCYNTRLKEDGGCTIWYNEMQLLSEI  662
            GR GR  + G A++    E +K    + +  +  GC       + G + W  +M  LS+ 
Sbjct  467  GRTGRGGKAGKAVTFFTKEDDKAIKPILNVMKQSGC-------NDGYSQWMEDMGKLSKK  519

Query  663  EE  664
            E+
Sbjct  520  EK  521


 Score = 53.9 bits (128),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 81/167 (49%), Gaps = 23/167 (14%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGV------D  341
            + LI+ P+ ELA Q    ++   +           I   + ++   S L N +      D
Sbjct  205  RGLIISPTNELAVQIFQELEIITRGCKQ-------INVAILSKQLASKLNNNIIKSSKYD  257

Query  342  IVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM--HNQIPQVTSDGK  399
            I+V TP RL D+V  G ++LS++  L++DEAD L   G+++  + +  H   P++     
Sbjct  258  IIVSTPLRLIDVVKQGNMDLSKIEQLIIDEADKLFDHGFAEQTDEILTHCTNPKIRKS--  315

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVV  446
                 + SAT+ S  V++++  IM  P  + +  +++  +T+   +V
Sbjct  316  -----IFSATIPS-SVEEMAHSIMKDPLRIIIGHKEAASNTIDQKLV  356


 Score = 49.3 bits (116),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 0/57 (0%)

Query  21   DWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKG  77
            +++ PT IQ ESIP+ L   D++  A TGSGKT AF IP++Q +      +  G +G
Sbjct  150  EFVEPTPIQCESIPITLNNRDLIACAPTGSGKTLAFLIPLVQQILSKNVSKNHGIRG  206


>sp|Q6K7R9|RH48_ORYSJ DEAD-box ATP-dependent RNA helicase 48 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os02g0826100 PE=2 
SV=1
Length=811

 Score = 89.0 bits (219),  Expect = 7e-17, Method: Compositional matrix adjust.
 Identities = 93/360 (26%), Positives = 162/360 (45%), Gaps = 65/360 (18%)

Query  274  NAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR-DQ  332
            NA  + T    +   +LI+ P+RELA Q         KY     ++ L  IGG   + DQ
Sbjct  406  NAMKSHTNHRVSPIFSLILCPTRELAIQLTAEANVLLKYHQGIGVQSL--IGGTRFKLDQ  463

Query  333  LSVLENGVDIVVGTPGRLDDLV---STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHN  389
              +  +   I+V TPGRL D +   S+  + L  ++ LVLDEAD LL  G+   I ++ +
Sbjct  464  RRLESDPCQILVATPGRLLDHIENKSSFSVRLMGLKLLVLDEADHLLDLGFRTDIEKIVD  523

Query  390  QIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN  449
             +P      ++ Q ++ SAT+   +V+++S+ +        LK +    DTV    V   
Sbjct  524  SLP------RQRQTLLFSATIPK-EVRRVSQLV--------LKRDHVFVDTVGLGAVETP  568

Query  450  PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ-  508
             K ++L+       +   ++H                            R ++EH +DQ 
Sbjct  569  TKVEQLY------LVMPHELHF-----------------------HMVYRLLREH-IDQE  598

Query  509  ----AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
                 I+FC T +  + +  Y +        +  + +   +H  +    R +  E F+  
Sbjct  599  VDYKVIVFCTTAMVTEFM--YIML-------RDLKLNVREIHSRKPQLYRTRISEEFRDS  649

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
                L+ +DV+ RG++  GV  VI V +P ++++Y+HR+GR GR  + G  I L+A  +E
Sbjct  650  SRLILVTSDVSTRGVNYPGVTLVIQVGVPSDREHYIHRLGRTGREGKSGKGILLLAPWEE  709


 Score = 53.5 bits (127),  Expect = 6e-06, Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 0/66 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F E G+ P   +A+ +  ++  T +Q  ++P+ L G DVL+ A+TG+GK+ AF +P I+ 
Sbjct  344  FEECGISPLTVKALTDAGYVQTTVVQETALPMCLEGKDVLVKAKTGTGKSAAFLLPAIES  403

Query  64   VYETLK  69
            V   +K
Sbjct  404  VLNAMK  409


>sp|Q6BXG0|DBP4_DEBHA ATP-dependent RNA helicase DBP4 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP4 PE=3 SV=2
Length=766

 Score = 88.6 bits (218),  Expect = 8e-17, Method: Compositional matrix adjust.
 Identities = 85/342 (25%), Positives = 150/342 (44%), Gaps = 66/342 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            ALI+ P+RELA Q    + +  K+ +       L+ GG   + +   + + ++I+VGTPG
Sbjct  121  ALIISPTRELAVQIFEVLVKIGKHNN---FSAGLVTGGKDVKYEKERV-SKMNILVGTPG  176

Query  349  RLDD-LVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            R+   L  +  +  S ++ LVLDEAD  L  G+   I+ +   +P         Q ++ S
Sbjct  177  RISQHLNESVGMETSNLQVLVLDEADRCLDMGFKKQIDNILGHLPPTR------QTLLFS  230

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGE---DSVPDTV--HHVVVPVNPKTDRLWERLGKS  462
            AT  S  VK L+   +  P  V +  +    + P+++  +++ +P++ K D LW  + KS
Sbjct  231  AT-QSDSVKDLARLSLANPKRVGISSDQELSATPESLEQYYIKIPLDEKLDVLWSFI-KS  288

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
            H+++                       KIL                 + F  +K      
Sbjct  289  HLKS-----------------------KIL-----------------VFFSSSKQVQYAY  308

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
            E +   Q G         S + L+G  K   R +   +F +     L  TD+ ARG+D  
Sbjct  309  ETFRTLQPG--------ISLLKLYGRHKQTSRMETTMKFSQAQHACLFATDIVARGLDFP  360

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
             + +V+ +  P++   YVHR+GR  R  R G ++ ++   +E
Sbjct  361  AIDWVVQIDCPEDAATYVHRVGRAARFGRAGKSLMMLLPSEE  402


 Score = 56.6 bits (135),  Expect = 8e-07, Method: Compositional matrix adjust.
 Identities = 27/62 (44%), Positives = 42/62 (68%), Gaps = 0/62 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++ FS++ +  E A+ ++E  +   TDIQ ++IP+ L G DV+  A+TGSGKT AF IP 
Sbjct  45   ISQFSDLPISEETARGLKEASFASLTDIQKKTIPISLKGEDVMGTAKTGSGKTLAFLIPT  104

Query  61   IQ  62
            I+
Sbjct  105  IE  106


>sp|Q9FNM7|RH26_ARATH DEAD-box ATP-dependent RNA helicase 26 OS=Arabidopsis 
thaliana OX=3702 GN=RH26 PE=1 SV=2
Length=850

 Score = 88.6 bits (218),  Expect = 8e-17, Method: Compositional matrix adjust.
 Identities = 99/356 (28%), Positives = 151/356 (42%), Gaps = 77/356 (22%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA-ARDQLSVLENGVDIVVGTPG  348
            L+V P+RELA Q         KY  +P +   ++IGG     +Q  +  N   I+V TPG
Sbjct  462  LVVCPTRELASQAAAEANTLLKY--HPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPG  519

Query  349  RLDDLV---STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            RL D +   S     L  V+ LVLDEAD LL  G+   I R+   +P      K+ Q  +
Sbjct  520  RLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVP------KQRQTFL  573

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT     V +   +I H    V LK +    + V               E  G++H +
Sbjct  574  FSAT-----VPEEVRQICH----VALKRDHEFINCVQ--------------EGSGETHQK  610

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI--KEHKMD----QAIIFCRT----  515
               ++                  I  L   +++  +  KEH  D    + IIFC T    
Sbjct  611  VTQMYM-----------------IASLDRHFSLLHVLLKEHIADNVDYKVIIFCTTAMVT  653

Query  516  KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE-RKQNLERFKKGDVRFLICTDV  574
            ++  D L Q                +   +H  RKP   R +  + F+K     L+ +DV
Sbjct  654  RLVADLLSQL-------------SLNVREIHS-RKPQSYRTRVSDEFRKSKAIILVTSDV  699

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
            +ARG+D   V  V+ + LP +++ Y+HR+GR GR  + G  + L+A  +E     V
Sbjct  700  SARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLAPWEEYFMSSV  755


 Score = 47.8 bits (112),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 23/64 (36%), Positives = 40/64 (63%), Gaps = 0/64 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +  + P   +A+++  +   T +Q  ++P+IL G DVL  A+TG+GKT AF +P I+ 
Sbjct  384  FDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEA  443

Query  64   VYET  67
            V ++
Sbjct  444  VIKS  447


>sp|Q6ZPL9|DDX55_MOUSE ATP-dependent RNA helicase DDX55 OS=Mus 
musculus OX=10090 GN=Ddx55 PE=1 SV=2
Length=600

 Score = 88.2 bits (217),  Expect = 9e-17, Method: Compositional matrix adjust.
 Identities = 91/353 (26%), Positives = 152/353 (43%), Gaps = 57/353 (16%)

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV-AARDQLSVLE  337
            + K   N   A+++ P+RELA Q    +  F K+   P+  ++L IGG     D     +
Sbjct  75   EEKLKKNQVGAIVITPTRELAIQIDEVLSHFTKHF--PQFSQILWIGGRNPGEDVERFKQ  132

Query  338  NGVDIVVGTPGRLDDLVSTGK--LNLSQ----VRFLVLDEADGLLSQGYSDFINRMHNQI  391
            +G +I+V TPGRL+D+       L+L+     +  LVLDEAD LL  G+   IN +   +
Sbjct  133  HGGNIIVATPGRLEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINTILEFL  192

Query  392  PQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPK  451
            P+    G      + SAT  + +V+ L    +  P  + +K +     +           
Sbjct  193  PKQRRTG------LFSAT-QTQEVENLVRAGLRNPVRISVKEKGVAASS-----------  234

Query  452  TDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAII  511
            T +   RL             +N      + E +++ +  L+           + ++ ++
Sbjct  235  TQKTPSRL-------------ENHYMICKADEKFNQLVHFLRS---------RQQEKHLV  272

Query  512  FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLIC  571
            F  T   C  +E Y    G   +    +   +C+HG  K ++R +    F+K     L+C
Sbjct  273  FFST---CACVEYY----GKALEALLKKVKILCIHGKMK-YKRNKIFMEFRKLQSGILVC  324

Query  572  TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            TDV ARGIDI  V +V+    P     +VHR GR  R    G A+  +   +E
Sbjct  325  TDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLPMEE  377


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 3/67 (4%)

Query  11  PEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVY---ET  67
           P +  A+ E+ +   T +Q+ +IPL +   DV   A TGSGKT AF IP+++I+    E 
Sbjct  18  PRVLGALRELGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRREEK  77

Query  68  LKDQQEG  74
           LK  Q G
Sbjct  78  LKKNQVG  84


>sp|Q9FFQ1|RH31_ARATH DEAD-box ATP-dependent RNA helicase 31 OS=Arabidopsis 
thaliana OX=3702 GN=RH31 PE=2 SV=2
Length=716

 Score = 88.2 bits (217),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 94/349 (27%), Positives = 150/349 (43%), Gaps = 73/349 (21%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA-ARDQLSVLENGVDIVVGTP  347
            AL++ P+RELA Q         KY  +P +   ++IGG     +Q  +  N   I+V TP
Sbjct  327  ALVICPTRELANQAATEANTLLKY--HPSIGVQVVIGGTRLGLEQKRMQTNPCQILVATP  384

Query  348  GRLDDLVSTG---KLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GRL D +         L  V+ LVLDEAD LL  G+   I R+ + +P      K  Q  
Sbjct  385  GRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIISAVP------KERQTF  438

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT+   +V+++          V L+ +    + VH   +              ++H 
Sbjct  439  LFSATVPE-EVRQI--------CLVALRRDHEFVNCVHEGTI--------------ETHQ  475

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD----QAIIFCR----TK  516
            +   +H             M +   +     Y +  ++EH M     + I+FC     TK
Sbjct  476  QVRQMH-------------MIASLDRHFSLLYTL--LREHIMGNVDYKVIVFCTTAMVTK  520

Query  517  IDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE-RKQNLERFKKGDVRFLICTDVA  575
            +  D L +                +   +H  RKP   R +    F+K     L+ +DV+
Sbjct  521  LVADLLGEL-------------NLNVREIHS-RKPQSYRTRVSNEFRKSKGLILVTSDVS  566

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            ARG+D   V  V+ V LP +++ Y+HR+GR GR  + G  I L+A  +E
Sbjct  567  ARGVDYPDVTLVLQVGLPKDREQYIHRLGRTGRKGKEGEGILLLAPWEE  615


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 24/73 (33%), Positives = 43/73 (59%), Gaps = 0/73 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F    + P   +A+++  +   T +Q  ++P+IL G DVL  A+TG+GKT AF +P I++
Sbjct  250  FDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEV  309

Query  64   VYETLKDQQEGKK  76
            V ++     + K+
Sbjct  310  VVKSPPTSPDNKR  322


>sp|A1DE84|DBP7_NEOFI ATP-dependent RNA helicase dbp7 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp7 
PE=3 SV=1
Length=758

 Score = 88.2 bits (217),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 157/371 (42%), Gaps = 72/371 (19%)

Query  289  ALIVEPSRELAEQ---TLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            A+++ P+REL +Q    L N+ +   +I         +IGG   + + + L  G++I+V 
Sbjct  228  AIVLAPTRELCKQISVVLENLLRCAHWI-----VAGTVIGGEKKKSEKARLRKGLNILVA  282

Query  346  TPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN---------RMHNQIPQVT  395
            TPGRL D L +T  L++S VR+LVLDE D L+  G+ + I          +  ++IP V 
Sbjct  283  TPGRLADHLDNTQALDVSNVRWLVLDEGDRLMELGFEEEIQGIVKKLDARQRPSRIPGVP  342

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL  455
            +   R   I+CSATL    V+KL              GE S+ D VH   +  +P+ +  
Sbjct  343  T---RRTTILCSATL-KMSVQKL--------------GEISLKDAVH---IKADPEDEDE  381

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRT  515
              R  K       V A+        + ++    +  L   +    +++  + +AIIF   
Sbjct  382  KARRSKEEESAYRVPAQLKQSYAVVAAKLR---LVTLTAFFKRTFMRKGSVMKAIIFVSC  438

Query  516  KIDCDNLEQYFIQQGGGPD-----------------------------KKGHQFSCVCLH  546
                D   + F ++    D                                +  +   LH
Sbjct  439  ADSVDFHFEVFTRKQAKEDGDESSDTDKSEDKPPSSPHGTIAPATAFSNPSNPVTLFRLH  498

Query  547  GDRKPHERKQNLERFKKG-DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR  605
            G    + R   L  F K  +   LICTDVA+RG+D+  V  V+        ++++HRIGR
Sbjct  499  GSLPQNVRTSTLGAFAKNKEASVLICTDVASRGLDLPNVDLVVEYDPAFSAEDHLHRIGR  558

Query  606  VGRAERMGLAI  616
              R  R G A+
Sbjct  559  TARVGRDGRAL  569


 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 39/63 (62%), Gaps = 2/63 (3%)

Query  4    FSEMGVMPEIA-QAVEEMDWLLPTDIQAESIPLILGG-GDVLMAAETGSGKTGAFSIPVI  61
            F+ +G+ P +A   + +++   PT IQ  SI  +L   GD  + AETGSGKT A+ +P++
Sbjct  140  FTNLGLSPSLAAHLLTKLELKAPTAIQKASISQLLKEEGDAFIQAETGSGKTLAYLLPLV  199

Query  62   QIV  64
            Q +
Sbjct  200  QRI  202


>sp|Q6CRF4|DBP4_KLULA ATP-dependent RNA helicase DBP4 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP4 PE=3 SV=1
Length=770

 Score = 88.2 bits (217),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 152/348 (44%), Gaps = 73/348 (21%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG---VAARDQLSVLENGVDIVVG  345
            ALI+ P+RELA Q    + +  K+         L+IGG      ++++S     ++I++G
Sbjct  116  ALIISPTRELAMQIYEVLSKIGKHT---TFSAGLVIGGKDVTFEKERIS----RINILIG  168

Query  346  TPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            TPGR L  +      N S ++ LVLDEAD  L  G+   ++ + N +P         Q +
Sbjct  169  TPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASR------QTL  222

Query  405  VCSATLHSF--DVKKLS---EKIMHFPTWVDLKGEDSVPDTVH--HVVVPVNPKTDRLWE  457
            + SAT      D+ +LS    K +     ++     + P+++   ++ VP+  K D L+ 
Sbjct  223  LFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFS  282

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
             + KSH+++                                         + I+F  +  
Sbjct  283  FI-KSHLKS-----------------------------------------KLIVFLSSSK  300

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
                + + F +   G        S + LHG +K   R + L++F +     L  TDV AR
Sbjct  301  QVHFVYETFRKLQPG-------ISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVAR  353

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            GID   V +VI V  P++   Y+HR+GR  R  + G ++ ++  E+E+
Sbjct  354  GIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEE  401


 Score = 58.9 bits (141),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 43/62 (69%), Gaps = 0/62 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F ++ +  +  + ++E  ++  T+IQ ESIPL L G DVL AA+TGSGKT AF IPVI+ 
Sbjct  43   FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK  102

Query  64   VY  65
            +Y
Sbjct  103  LY  104


>sp|Q2GMX1|HAS1_CHAGB ATP-dependent RNA helicase HAS1 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=HAS1 PE=3 SV=1
Length=586

 Score = 87.8 bits (216),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 140/331 (42%), Gaps = 60/331 (18%)

Query  281  KFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
            +F P N    ++V P+RELA Q     ++  K   N      ++IGG   R +   L  G
Sbjct  178  RFKPRNGTGVIVVTPTRELALQIFGVARELMK---NHSQTYGVVIGGANIRAEEDKLGKG  234

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
            V++++ TPGRL D +  G      ++ L++DEAD +L  G+ D +  +   +P       
Sbjct  235  VNLLIATPGRLLDHLRRGSFVFKNLKSLIIDEADRILEVGFEDEMRHIVKILP-------  287

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
                             K + + M F      K ED                  R+  R 
Sbjct  288  -----------------KENRQTMLFSATQTTKVEDLA----------------RISLRP  314

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
            G  +I  D+   + +T  G +   +  +A K     ++   +K+    + I+F  +   C
Sbjct  315  GPLYINVDE-EKQFSTVEGLDQGYVIVDADKRFLLLFSF--LKKMAKKKIIVFLSS---C  368

Query  520  DNLEQY--FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
            ++++ Y   +Q              + LHG +K  +R      F       LICTDVAAR
Sbjct  369  NSVKYYSELLQY--------IDLQVLDLHGKQKQQKRTNTFFEFCNAKQGTLICTDVAAR  420

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
            G+DI  V +++    PD+ ++Y+HR+GR  R
Sbjct  421  GLDIPQVDWIVQFDPPDDPRDYIHRVGRTAR  451


 Score = 57.8 bits (138),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 29/62 (47%), Positives = 41/62 (66%), Gaps = 0/62 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            AFSE+ +  +   ++ EM +   T+IQ   IP +L G DVL AA+TGSGKT AF IP I+
Sbjct  113  AFSELNLSDKTMMSINEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE  172

Query  63   IV  64
            ++
Sbjct  173  ML  174


>sp|Q0UR48|HAS1_PHANO ATP-dependent RNA helicase HAS1 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=HAS1 PE=3 SV=1
Length=610

 Score = 87.4 bits (215),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 147/334 (44%), Gaps = 58/334 (17%)

Query  277  VTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
            ++  +F P N    ++V P+RELA Q     ++    ++       ++IGG   R +   
Sbjct  193  LSSMRFKPRNGTGVIVVSPTRELALQIFGVAREL---MEKHSQTFGIVIGGANRRAEAEK  249

Query  336  LENGVDIVVGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV  394
            L  GV++++ TPGRL D L +T       ++ L++DEAD +L  G+ D    M + I  +
Sbjct  250  LAKGVNLLIATPGRLLDHLHNTQGFVFKNLKSLIIDEADRILEVGFED---EMRSIIKIL  306

Query  395  TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDR  454
             +D ++  +   + T    D+ ++S K       VD + E S                  
Sbjct  307  PTD-RQTMLFSATQTTKVEDLARISLKAGPLYINVDYRKEHST-----------------  348

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
              E L + ++  D      +TR             ++L        +K+H+  + I+F  
Sbjct  349  -VEGLEQGYVICDS-----DTR------------FRLL-----FSFLKKHQKKKVIVFFS  385

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
            +   C+++ +++ +     D        + LHG  K   R      F       LICTDV
Sbjct  386  S---CNSV-KFYAELLNYID-----LPVLELHGKLKQQARTNRFFEFCNAQSGTLICTDV  436

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
            AARG+DI  V +VI    PD+ ++Y+HR+GR  R
Sbjct  437  AARGLDIPEVDWVIQFDPPDDPRDYIHRVGRTAR  470


 Score = 53.9 bits (128),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 41/61 (67%), Gaps = 0/61 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F E+ +     +A++ M +   T+IQ ++IP +L G DVL AA+TGSGKT AF IP I++
Sbjct  133  FDELNLSERTMEAIKTMGFESMTEIQRKAIPPLLSGKDVLGAAKTGSGKTLAFLIPAIEM  192

Query  64   V  64
            +
Sbjct  193  L  193


>sp|Q9FFT9|RH32_ARATH DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis 
thaliana OX=3702 GN=RH32 PE=2 SV=1
Length=739

 Score = 87.8 bits (216),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 143/346 (41%), Gaps = 72/346 (21%)

Query  290  LIVEPSRELAEQT---LNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            +I+ P+RELA QT   LN + +F K+         L+IGG    D      + ++I+V  
Sbjct  147  IIISPTRELAAQTFGVLNKVGKFHKFSAG------LLIGGREGVDVEKERVHEMNILVCA  200

Query  347  PGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            PGRL   +  T      Q++ L+LDEAD +L   +   ++ + +Q+P      K  Q ++
Sbjct  201  PGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQLP------KHRQTLL  254

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGE--DSVPDTVHHVV--VPVNPKTDRLWERLGK  461
             SAT  +  VK L+   +  P ++ +  E   + P ++   V  VPV  K D LW     
Sbjct  255  FSAT-QTKKVKDLARLSLRDPEYISVHAEAVTATPTSLMQTVMIVPVEKKLDMLWS----  309

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
                                                   IK H   + ++F  TK     
Sbjct  310  --------------------------------------FIKTHLNSRILVFLSTKKQVKF  331

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            + + F +   G            LHG     +R     +F +     L CTDV ARG+D 
Sbjct  332  VHEAFNKLRPG-------IPLKSLHGKMSQEKRMGVYSQFIERQ-SVLFCTDVLARGLDF  383

Query  582  -HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
               V +V+ V  P++  +Y+HR+GR  R    G ++  +   +EK+
Sbjct  384  DKAVDWVVQVDCPEDVASYIHRVGRTARFYTQGKSLLFLTPSEEKM  429


 Score = 49.3 bits (116),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 42/62 (68%), Gaps = 0/62 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+++ +  +  + +++  ++  TD+Q+ +IP  L G D+L AA TGSGKT AF IP+++ 
Sbjct  73   FAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEK  132

Query  64   VY  65
            ++
Sbjct  133  LH  134


>sp|A5DIP0|DHH1_PICGU ATP-dependent RNA helicase DHH1 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DHH1 PE=3 
SV=1
Length=547

 Score = 87.0 bits (214),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 62/222 (28%), Positives = 96/222 (43%), Gaps = 33/222 (15%)

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
            K++QAIIFC +    + L +   + G         +SC   H       R +    F++G
Sbjct  265  KINQAIIFCNSTNRVELLAKKITELG---------YSCYYSHAKMPQQARNKVFHEFRQG  315

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
             VR L+C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR   +GLAI+ +  +  
Sbjct  316  SVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINFIHWDDR  375

Query  625  KVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEF  684
            K  +++ +  G     T +K             + S+I+  L  T  +        +DE 
Sbjct  376  KSLFNIETELG-----TEIKP------------IPSDIDRSLYVTEDEASIPRPFKIDEL  418

Query  685  DGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKEAQTSF  726
                 + +KR   G  Y+G      PT Q       +A T +
Sbjct  419  PKGNEHSRKR--NGYEYRGQ-----PTSQGFPQQPPQANTGY  453


 Score = 73.2 bits (178),  Expect = 4e-12, Method: Compositional matrix adjust.
 Identities = 52/158 (33%), Positives = 82/158 (52%), Gaps = 10/158 (6%)

Query  277  VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL  336
            + Q K   N  + LI+ P+RELA QT   +K   K++   KL+ ++  GG   RD +  L
Sbjct  88   LQQVKTKLNKIQVLILVPTRELALQTSQVVKTLGKHL---KLQCMVTTGGTLLRDDVMRL  144

Query  337  ENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTS  396
            +  V I+VGTPGR+ DL +    + S+    V+DEAD +LS+ +   I ++    P    
Sbjct  145  DEPVHILVGTPGRVLDLAARSIADFSECPMFVMDEADKMLSREFKGIIEQILEFFP----  200

Query  397  DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE  434
              K  Q ++ SAT     VK   +K ++ P  ++L  E
Sbjct  201  --KNRQSLLFSATF-PLAVKSFMDKHLNKPYEINLMDE  235


 Score = 54.7 bits (130),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 0/70 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +F E G+  E+   + E  +  P+ IQ ESIP+ L G D+L  A+ G+GKT +F IP +Q
Sbjct  30  SFEEFGLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPALQ  89

Query  63  IVYETLKDQQ  72
            V   L   Q
Sbjct  90  QVKTKLNKIQ  99


>sp|Q0DBU5|RH31_ORYSJ DEAD-box ATP-dependent RNA helicase 31 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os06g0526600 PE=3 
SV=2
Length=547

 Score = 87.0 bits (214),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 93/350 (27%), Positives = 151/350 (43%), Gaps = 75/350 (21%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV-AARDQLSVLENGVDIVVGTP  347
             ++V P+RELA+Q      +  K+  +P +   L+IGG   A +Q  +  N   I+V TP
Sbjct  158  VVVVCPTRELADQAAAEANKLLKF--HPSIGVQLVIGGTRMALEQKRMHTNPCQILVATP  215

Query  348  GRLDDLVSTG---KLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GRL D +         L  V+ L+LDEAD LL  G+   I R+   +P      K+ Q +
Sbjct  216  GRLKDHMENTPGFATRLMGVKVLILDEADRLLDMGFRTDIERIVAALP------KQRQTL  269

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSV---PDTVH------HVVVPVNPKTDRL  455
            + SAT     V     ++ H     DL+  ++V    +  H      HVV P++ +   L
Sbjct  270  LFSAT-----VPDEVRQVCHIAMKRDLEFVNTVEEGSEETHSQVKQMHVVAPLDKQFSIL  324

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRT  515
            +  L      TD  H  +N                    +Y V           I+FC T
Sbjct  325  YGLL------TD--HISENV-------------------DYKV-----------IVFCTT  346

Query  516  KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLER-FKKGDVRFLICTDV  574
                  + +   +          + +   +H  RKP   +  + + FK+     L+ +DV
Sbjct  347  AKVTSLVAELLSEL---------KLNVREIHS-RKPQSYRTRISKEFKESKGLILVSSDV  396

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            +ARG+D   V  V+ + +P +++ Y+HR+GR GR    G  I L+A  +E
Sbjct  397  SARGVDYPNVTLVVQMGVPTDREQYIHRLGRTGRRGNEGSGILLLAPWEE  446


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (61%), Gaps = 0/61 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F E  + P   + V+   +   T +Q  ++P+IL G DVL  A+TG+GKT AF +P I++
Sbjct  81   FDECSLSPLTLKGVKAAGYERMTAVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPAIEV  140

Query  64   V  64
            V
Sbjct  141  V  141


>sp|Q6FN65|ROK1_CANGA ATP-dependent RNA helicase ROK1 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=ROK1 PE=3 SV=1
Length=565

 Score = 87.0 bits (214),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 142/321 (44%), Gaps = 63/321 (20%)

Query  288  KALIVEPSRELAEQTLNNIKQFKK--YIDNPKLRELLIIG---GVAARDQLSVLENGVDI  342
            K LI+ P++ELA Q  N   +  K  Y+D  +  ++ I+    G   R+++ + +   D+
Sbjct  196  KGLIISPTKELATQIFNECVKLSKRIYLDKKRPLQVAILSKSLGAKLRNKV-ISDKKYDL  254

Query  343  VVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            ++ TP RL D+V    L+LS V+ L+ DEAD L  +    FI +  + +   T    R  
Sbjct  255  IISTPLRLIDVVKNEALDLSNVKHLIFDEADKLFDKT---FIEQTDDILNSCTDPSMRKS  311

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
            +   SAT+ S  V++ +  IM+ P  V +  +++    +   ++    +  +L       
Sbjct  312  MF--SATIPS-SVEETANSIMNDPVRVIIGHKEAANTNIEQKLIFCGNEEGKL-------  361

Query  463  HIRTDDVHAKDNTRPGANSPE--MWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
                  +  +   + G   P   ++ E+I   K  Y             +++ R  +D  
Sbjct  362  ------IAIRQLVQQGEFKPPIIIFLESIARAKALY-----------HELMYDRINVDVI  404

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
            + E+  IQ                         R++ +ERFK G++  LICTDV ARGID
Sbjct  405  HAERTAIQ-------------------------REKIIERFKTGELWCLICTDVLARGID  439

Query  581  IHGVPYVINVTLPDEKQNYVH  601
              GV  VIN  +P   Q YVH
Sbjct  440  FKGVNLVINYDVPTTAQAYVH  460


 Score = 52.4 bits (124),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 25/42 (60%), Positives = 30/42 (71%), Gaps = 0/42 (0%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYE  66
            PT IQ E+IPL L G D+L  A TGSGKT AF IP++Q + E
Sbjct  147  PTPIQCEAIPLCLNGRDLLACAPTGSGKTLAFLIPLLQQIIE  188


>sp|Q1K8F7|CYT19_NEUCR ATP-dependent RNA helicase cyt-19, mitochondrial 
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A 
/ CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=cyt-19 PE=1 
SV=1
Length=626

 Score = 87.0 bits (214),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 152/362 (42%), Gaps = 57/362 (16%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQL-SVLENGVDIVVGT  346
            +A+I+ P+RELAEQ     ++ +K +    +     +GG      L    + G  I+VGT
Sbjct  159  RAIIISPTRELAEQIG---EEARKLVKGTGIIVQTAVGGTQKNAMLYKTRQQGCHILVGT  215

Query  347  PGRLDDLVSTGKLNLSQVRF--LVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL--Q  402
            PGRL+DL+S     +   R   LVLDEAD +L  G+++ + ++ N +P    D K L  Q
Sbjct  216  PGRLNDLLSDSHSGIDAPRLSTLVLDEADRMLEVGFNEELRQIINYLP----DRKVLPRQ  271

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
             ++ SAT+   DV  L+       +++D    + V                         
Sbjct  272  TLLYSATIPK-DVVGLAR------SYIDKNNFEFV------------------------Q  300

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD------QAIIFCRTK  516
             ++ D+V   D   P    P    E I     E   +A+ E + +      +AI+F  T 
Sbjct  301  TVKADEVLTHDRI-PQYIVPCKGFENIYPAMLELIEKALNESRTNPEALPFKAIVFLPTT  359

Query  517  IDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAA  576
             +       F +      K  H      +H     + R +  + FK      L  +DV A
Sbjct  360  AEVIMANAIFKRLQW---KFKHIPKTWDIHSKLTQNARTRAADEFKNARTGILFSSDVTA  416

Query  577  RGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGK  636
            RG+D   V +VI   +P  ++ Y+HR+GR GRA + G    +V      +  H   SR  
Sbjct  417  RGMDFPNVSHVIQTHIPPNREQYIHRLGRTGRANKPGQGWLIV----PDIELHAARSRLP  472

Query  637  GC  638
            G 
Sbjct  473  GL  474


 Score = 40.4 bits (93),  Expect = 0.062, Method: Compositional matrix adjust.
 Identities = 22/65 (34%), Positives = 38/65 (58%), Gaps = 1/65 (2%)

Query  1    MAAFSEMGVMPEIAQAVEE-MDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
             A  + +GV   + +A+   M +   T++Q+ +I   L G D++  A+TG+GKT  F +P
Sbjct  73   FADLAALGVHENVVRAITHGMGYENMTEVQSMTISPALKGKDIVAQAKTGTGKTLGFLVP  132

Query  60   VIQIV  64
            VIQ +
Sbjct  133  VIQKI  137


>sp|Q2UST1|MS116_ASPOR ATP-dependent RNA helicase mss116, mitochondrial 
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) 
OX=510516 GN=mss116 PE=3 SV=1
Length=633

 Score = 87.0 bits (214),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 138/344 (40%), Gaps = 50/344 (15%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGV-DIVVGTPG  348
            LI+ P+RELA+Q   +  Q    +  P L   + +GG A    L+    G   I+V TPG
Sbjct  170  LIITPTRELAQQIAKSCDQLTSQLARP-LECHIAVGGTARASALARFMKGAPSILVATPG  228

Query  349  RLDDLVS--TGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            RL D +S  +    LS ++ L+LDEAD +L  G+   + R+   IP  ++     Q +  
Sbjct  229  RLKDYLSEPSTAEKLSNIQTLILDEADTMLESGFLADVKRILQLIPPKSTG---WQGMCF  285

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT        +  K+    + V   G  S+  T+     P +       ER+ + H+  
Sbjct  286  SAT--------VPPKVKDVVSVVLKPGYTSI-STIEKNETPTH-------ERVPQYHVLI  329

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
              V             + ++    +L  E         K    II      +   L    
Sbjct  330  PSVA------------DTFTTLASLLNLEI--------KNSSKIIVFGVTANMVALFAAA  369

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
              QG  P K         +H       R +    FK+     +  +DV  RG+D   V  
Sbjct  370  FSQGLTPLK------VFEIHSRLSQSARTKTTALFKEAATGIMFASDVIGRGMDFPNVDL  423

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
            VI V LP   + YVHR+GR  RA   G AI L+ TE E  +  V
Sbjct  424  VIQVGLPSNGEQYVHRVGRTARAGNDGRAIILL-TEAESFFMKV  466


>sp|Q6BJX6|DHH1_DEBHA ATP-dependent RNA helicase DHH1 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DHH1 PE=3 SV=2
Length=516

 Score = 86.7 bits (213),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 9/116 (8%)

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
            +++QAIIFC +    + L +   + G         +SC   H     H R +    F++G
Sbjct  266  QINQAIIFCNSTNRVELLAKKITELG---------YSCYYSHAKMPQHARNKVFHEFRQG  316

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
             VR L+C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR   +GLAI+L++
Sbjct  317  KVRVLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMS  372


 Score = 69.7 bits (169),  Expect = 5e-11, Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 79/150 (53%), Gaps = 10/150 (7%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N  +ALI+ P+RELA QT   ++   K++    L+ ++  GG + RD +  L + V ++V
Sbjct  97   NKIQALILVPTRELALQTSQVVRTLGKHLG---LQCMVTTGGTSLRDDILRLNDPVHVLV  153

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GTPGR+ DL S    +LS+    V+DEAD +LS+ +   I ++    P         Q +
Sbjct  154  GTPGRVLDLASRKVADLSECPLFVMDEADKMLSREFKGIIEQILAFFPTTR------QSL  207

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGE  434
            + SAT     VK   ++ +  P  ++L  E
Sbjct  208  LFSATF-PLAVKSFMDQHLTKPYEINLMDE  236


 Score = 48.9 bits (115),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 22/60 (37%), Positives = 35/60 (58%), Gaps = 0/60 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +  +  E+   + E  +  P+ +Q ESIP+ L G D+L  A+ G+GKT +F IP +Q
Sbjct  31  TFEDFPLKRELLMGIFEAGFEKPSPVQEESIPMALAGRDILARAKNGTGKTASFVIPCLQ  90


>sp|P34668|YO12_CAEEL Putative ATP-dependent RNA helicase ZK686.2 
OS=Caenorhabditis elegans OX=6239 GN=ZK686.2 PE=3 SV=2
Length=593

 Score = 86.7 bits (213),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 98/398 (25%), Positives = 184/398 (46%), Gaps = 48/398 (12%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA--ARDQLSVLENGVDIVVG  345
            +A+I+ P + L  Q ++   +FK++ D   + +++ + G     ++   +  +  +++V 
Sbjct  190  QAVILVPVQTLVAQIVD---EFKRWNDESGVAKVVSLSGANDFEKEARQLASDPPNVIVA  246

Query  346  TPGRLDDLVSTG---KLNLSQVRFLVLDEAD---GLLSQGYSDFINRMHNQIPQVT----  395
            TP RL   +++     ++LS++RFL++DEAD    L+ + + D +  +   + +V     
Sbjct  247  TPARLVQHLTSKIPPPIDLSKLRFLIVDEADRMGKLMREEWLDLVEFLCGGMERVACLKD  306

Query  396  --SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTD  453
                 +  Q IV SATL S DV++L    +  P         SV D    +     P+ D
Sbjct  307  IIRQRRAPQKIVLSATL-SKDVEELHLWNLFKPRLFSATAV-SVKDITSGI-----PQVD  359

Query  454  RLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFC  513
             +  RL         + +  + R     P+    A+         + I  +K ++ +IF 
Sbjct  360  HVSGRLA--------LPSSISHRLVVTDPKFHPLAV--------YQQITRNKFNRTLIFV  403

Query  514  RTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTD  573
              ++   N   + +++    D+    +    L G R    R + LE+F K + R LIC+D
Sbjct  404  -NEVSSSNRLAHVLKELCK-DQFEVDYFTAQLFGKR----RYKMLEKFNKNENRVLICSD  457

Query  574  VAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
            V ARG D++ V  VIN  LP + + +VHR GR GRA + G  IS+   E ++++  +   
Sbjct  458  VLARGTDLNKVDCVINYNLPADDKLFVHRAGRTGRAGQDGYVISVGDKESKRLFVKML--  515

Query  634  RGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTIS  671
            +    +   ++E     I+  +M   S+  E L  T+S
Sbjct  516  KVTNLWGDTVEEQMEEYIFEKDMDRYSKALESLKATVS  553


>sp|Q0UMB6|DBP10_PHANO ATP-dependent RNA helicase DBP10 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=DBP10 PE=3 SV=1
Length=878

 Score = 87.0 bits (214),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 149/354 (42%), Gaps = 39/354 (11%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + +I+ PSRELA QTL  +K+F +  D   LR +L++GG +  +Q + +    DI++ TP
Sbjct  150  RGVIMSPSRELALQTLKVVKEFGRGTD---LRTILLVGGDSLEEQFNSMTTNPDIIIATP  206

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GR   L     L+LS V+++V DEAD L   G++  +  +   +P         Q ++ S
Sbjct  207  GRFLHLKVEMGLDLSSVQYIVFDEADRLFEMGFAAQLAEILYALPTSR------QTLLFS  260

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            ATL    V + +   +  P  + L  E  +   +      +     +  +R G       
Sbjct  261  ATLPKSLV-EFARAGLQEPKLIRLDAESKISPDLKSAYFTI-----KSGDRDGAL-----  309

Query  468  DVHAKDNT-RPGANSPEMW----SEAIKILKGEYAVRAIKEHK----MDQAIIFCRTKID  518
             +H  +N  +      E+W     EA  + KG+   R     K     +  IIF  TK  
Sbjct  310  -IHLLENVIKMPVGQTEVWKQAKEEADNLSKGKKRKRGSGNPKDAPVEESTIIFAATKHR  368

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
             + L       G         +    ++G+     R++ ++ F+ G  R L+ TDVAARG
Sbjct  369  VEYLSTLLKAAG---------YPVSYVYGNLDQTARQEQVKDFRAGLTRILVVTDVAARG  419

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
                       + LP   +N     G  G     GL I  V T +  + + + +
Sbjct  420  YRHATHKPRHQLRLPFSTKNLCSSSGEDGPRWAEGLGIQPVQTCRSAISHRLTN  473


 Score = 57.8 bits (138),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 27/59 (46%), Positives = 40/59 (68%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  MG+   + +A+ +  + +PT IQ +++PLIL G DV+  A TGSGKT AF IP+I+
Sbjct  80   FQAMGLNVALLKAIAQKGFKIPTPIQRKAVPLILQGDDVVGMARTGSGKTAAFVIPMIE  138


>sp|A5E726|DBP6_LODEL ATP-dependent RNA helicase DBP6 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP6 PE=3 SV=1
Length=663

 Score = 86.7 bits (213),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 155/335 (46%), Gaps = 49/335 (15%)

Query  341  DIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD----FINRMH-NQIPQVT  395
            D+V+ TPGRL + ++   ++LS +R+LV+DEAD LL+Q + +     I+++H  Q+  V 
Sbjct  355  DVVISTPGRLVEHLAMDSISLSSLRYLVVDEADRLLNQSFQNWSQILISKIHLQQVYDVA  414

Query  396  SD-GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDR  454
            +    ++Q  + SATL + D  KL+    H P  + +     + + +  V  P      +
Sbjct  415  NVWSLKVQKFIFSATLTT-DAGKLASLDFHNPRLLIVNDSQRLVNELFSV--PAMLSEYK  471

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
            L   + KS ++                P + ++ +           I + K+   ++F +
Sbjct  472  LNFGVAKSSLK----------------PLILAKFL-----------IAQEKLSDVLVFTK  504

Query  515  TK---IDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLIC  571
            +    I    L Q    +    +K    F  +    + +   R + L+ F    +  L+ 
Sbjct  505  SNESSIRLCTLLQAIFDRICLQEKVKVGFMNLT---NNRTSLRSKILKDFTSQKINILVA  561

Query  572  TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVC  631
            TD+ ARG+D+  +  V+N  L +  + YVHR+GR  RA + G A +LV  + E+ W+   
Sbjct  562  TDLIARGLDVTSIKDVVNYDLLNSSREYVHRVGRTARANQAGNAYNLVFGKGEEKWFKTI  621

Query  632  SSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHL  666
            SS  +   N  +K+     +  N  QL+S+ +E L
Sbjct  622  SS--EVSRNNDVKD-----VEVNLKQLISDEDEKL  649


 Score = 39.7 bits (91),  Expect = 0.10, Method: Compositional matrix adjust.
 Identities = 20/32 (63%), Positives = 25/32 (78%), Gaps = 4/32 (13%)

Query  40   GDVLMAAETGSGKTGAFSIPVIQIVYETLKDQ  71
            GDVL+ A TGSGKT A+SIP+I    E+LKD+
Sbjct  271  GDVLVNASTGSGKTLAYSIPII----ESLKDR  298


>sp|Q7FGZ2|RH1_ARATH DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis 
thaliana OX=3702 GN=RH1 PE=2 SV=3
Length=522

 Score = 86.3 bits (212),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 97/394 (25%), Positives = 154/394 (39%), Gaps = 117/394 (30%)

Query  288  KALIVEPSRELAEQTLNNIK---------------------QFKKYIDNPKLRELLIIGG  326
            +AL+V P+R+LA Q  +                        +  + I  PKL      G 
Sbjct  106  RALVVLPTRDLALQVKDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDA----GI  161

Query  327  VAARDQLSV-LENGVDIVVGTPGRLDDLVSTGK-LNLSQVRFLVLDEADGLLSQGYSDFI  384
                D LS  LE+ VDI+V TPGRL D ++  K   L  +R+LV+DE D LL + Y  ++
Sbjct  162  CYDPDDLSQNLESAVDILVATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWL  221

Query  385  NRMHNQIPQVTSDG---------------------------------KRLQVIVCSATLH  411
              +  Q+ Q + D                                   RL  +V SATL 
Sbjct  222  PTVL-QLTQTSDDSLFPSFTPFVPSAFGSLQTVRRQSVERGFKGKPYPRLVKMVLSATLT  280

Query  412  SFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHA  471
              D  KL +  +H P ++   G                    RL E+L            
Sbjct  281  Q-DPSKLIQLDLHHPLFMTTGGSRY-----------------RLPEKL------------  310

Query  472  KDNTRPGANSPEMWSEAIKI-----LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                           E +++     +K  Y V  +K  + ++ IIF  + ++        
Sbjct  311  ---------------ECLRLICETGMKPVYLVALLKSWEGEKCIIFT-SSVETTRRLCKL  354

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
            +   G P  K  ++S     G      R + L+ F+KGD++ L+ +D   RG+D+ GV  
Sbjct  355  LNFFGDPKIKAKEYS-----GGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTN  409

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            VIN  +P   + ++HR GR  RA + G   +L++
Sbjct  410  VINYDMPPFAKTFIHRAGRTARAGQAGRCFTLLS  443


>sp|A3LNR6|HAS1_PICST ATP-dependent RNA helicase HAS1 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=HAS1 PE=3 SV=2
Length=567

 Score = 86.3 bits (212),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 149/330 (45%), Gaps = 57/330 (17%)

Query  281  KFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
            KF P N    ++V P+RELA Q     ++   +         ++IGG   R +   L  G
Sbjct  169  KFKPRNGTGVIVVSPTRELALQIFGVARELMAHHTQ---TFGIVIGGANRRQEAEKLAKG  225

Query  340  VDIVVGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
            V++++ TPGRL D L +T       ++ LV+DEAD +L  G+ + + ++   +P+   + 
Sbjct  226  VNLLIATPGRLLDHLQNTQGFVFKNLKALVIDEADRILEIGFEEEMKQIIKILPK---EE  282

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER  458
            ++  +   + T    D+ ++S  +   P ++++     VP+T                + 
Sbjct  283  RQSMLFSATQTTKVEDLARIS--LRPGPLYINV-----VPETAASTA-----------DG  324

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
            L + ++  D                  S+   +L   +    +K++   + I+F  +   
Sbjct  325  LEQGYVVCD------------------SDKRFLLLFSF----LKKYSKKKIIVFLSS---  359

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
            C+++ +YF +     D        + LHG +K  +R      F       L+CTDVAARG
Sbjct  360  CNSV-KYFGELLNYID-----LPVLDLHGKQKQQKRTNTFFEFCNAKQGTLVCTDVAARG  413

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
            +DI  V ++I    PD+ ++Y+HR+GR  R
Sbjct  414  LDIPAVDWIIQFDPPDDPRDYIHRVGRTAR  443


 Score = 58.9 bits (141),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 42/62 (68%), Gaps = 0/62 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F + G+     +A+ +M +   T +QA++IP +L G DVL AA+TGSGKT AF IP I++
Sbjct  105  FEDAGLSEPTMRAISDMGFKTMTKVQAKTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEL  164

Query  64   VY  65
            +Y
Sbjct  165  LY  166


>sp|Q4R4T6|DDX28_MACFA Probable ATP-dependent RNA helicase DDX28 
OS=Macaca fascicularis OX=9541 GN=DDX28 PE=2 SV=1
Length=546

 Score = 85.9 bits (211),  Expect = 4e-16, Method: Compositional matrix adjust.
 Identities = 94/351 (27%), Positives = 156/351 (44%), Gaps = 67/351 (19%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII--------GGVAARDQLSVLE  337
            AP+ L++ PSRELA+Q         + +  P  R L ++        G    R QL+  +
Sbjct  203  APRGLVLVPSRELAQQV--------QAVAQPLGRSLGLLVRDLEGGHGMCRIRMQLA-RQ  253

Query  338  NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM--HNQIPQVT  395
               D++V TPG L   + +  ++L Q+ FLVLDEAD LL + + + ++ +   + I    
Sbjct  254  PSADVLVATPGALWKALKSRLISLEQLSFLVLDEADTLLDESFLELVDCILEKSHIADGP  313

Query  396  SD-----GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNP  450
            +D       + Q+++  AT     V +L +K+   P  V      ++  +  H ++P   
Sbjct  314  ADLEDRFNPKAQLVLVGATFPE-GVGQLLDKVAS-PDAVT-----TITSSNLHCIMP---  363

Query  451  KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAI  510
                        H++   +  K     GA+     +E + ILK  +  RA +       +
Sbjct  364  ------------HVKQTFLRLK-----GADK---VAELVHILK--HHNRAERTGPSGTVL  401

Query  511  IFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLI  570
            +FC +    + L  Y +          H+   + L G      R    + F+K     L+
Sbjct  402  VFCNSSSTVNWLG-YILDD--------HKIQHLRLQGQMPALMRAGIFQSFQKSSRDILL  452

Query  571  CTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR--AERMGLAISLV  619
            CTD+A+RG+D  GV  V+N   P   Q+Y+HR GRVGR  +E  G  IS V
Sbjct  453  CTDIASRGLDSTGVELVVNYDFPPTLQDYIHRAGRVGRVGSEVPGTVISFV  503


 Score = 52.4 bits (124),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 25/61 (41%), Positives = 43/61 (70%), Gaps = 2/61 (3%)

Query  4    FSEMGVMPEIAQAVEEM--DWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            F+++G+ P +  A++E+  + + PT +Q+ +IP +L G  VL AAETGSGKT ++ +P+ 
Sbjct  128  FADLGLEPRVLHALQEVAPEVVQPTTVQSNTIPQLLRGRHVLCAAETGSGKTLSYLLPLF  187

Query  62   Q  62
            Q
Sbjct  188  Q  188


>sp|Q9NY93|DDX56_HUMAN Probable ATP-dependent RNA helicase DDX56 
OS=Homo sapiens OX=9606 GN=DDX56 PE=1 SV=1
Length=547

 Score = 85.9 bits (211),  Expect = 4e-16, Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 149/355 (42%), Gaps = 66/355 (19%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLS---VLENGVD  341
             A + L++ P++ELA Q  + I+Q   Y      R++ +    AA D +S   VL    D
Sbjct  81   QAVRGLVLVPTKELARQAQSMIQQLATYCA----RDVRVANVSAAEDSVSQRAVLMEKPD  136

Query  342  IVVGTPGRLDDLVSTGKLNLS-QVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR  400
            +VVGTP R+   +    L L   +  LV+DEAD L S G+ + +  +   +P++      
Sbjct  137  VVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLPRI------  190

Query  401  LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK-GEDSVPDTVHHVVVPVNPKTDRLWERL  459
             Q  + SAT +  DV+ L E I+H P  + L+  +   PD +    V    + D+     
Sbjct  191  YQAFLMSATFNE-DVQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLY  249

Query  460  ---------GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH---KMD  507
                     GKS +  + +      R      E +S    +L GE  +R+ + H   + +
Sbjct  250  ALLKLSLIRGKSLLFVNTLERSYRLRLFL---EQFSIPTCVLNGELPLRS-RCHIISQFN  305

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
            Q    C    D + L        G P K           G R+         R  KGD  
Sbjct  306  QGFYDCVIATDAEVL--------GAPVK-----------GKRR--------GRGPKGDK-  337

Query  568  FLICTDV---AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
                +D     ARGID H V  V+N  LP   + Y+HR GR  RA   G+ ++ V
Sbjct  338  ---ASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFV  389


 Score = 67.4 bits (163),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 43/61 (70%), Gaps = 0/61 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F  MG+ P + QAV ++ W  PT IQ ++IPL L G D+L  A TGSGKT A++IP++Q+
Sbjct  9   FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL  68

Query  64  V  64
           +
Sbjct  69  L  69


>sp|Q6CGD1|DBP4_YARLI ATP-dependent RNA helicase DBP4 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP4 PE=3 
SV=1
Length=740

 Score = 86.3 bits (212),  Expect = 5e-16, Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 144/344 (42%), Gaps = 71/344 (21%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG---VAARDQLSVLENGVDIVVG  345
            AL++ P+RELA Q    +++  +          L+IGG       D+L+ L    +I++ 
Sbjct  114  ALVISPTRELAVQIFQVLRKIGRC---HSFSAGLVIGGKDVAMEADRLAKL----NILIC  166

Query  346  TPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            TPGRL   +  T   +LS V+ LVLDEAD +L  G+   ++ +   +P         Q +
Sbjct  167  TPGRLLQHMDQTSGFDLSNVKMLVLDEADRILDMGFKKTMDAILENLPV------DRQTL  220

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGE--DSVPDTV--HHVVVPVNPKTDRLWERLG  460
            + SAT  +  V  L+   +  P ++    +   S P  +  ++V V +  K D LW    
Sbjct  221  LFSAT-QTKSVSDLARLSLADPKYISANPDTTSSTPKNLEQNYVCVELQDKLDTLW----  275

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
               +RT   H K                 KI+                 + F  +K    
Sbjct  276  -GFLRT---HTK----------------FKII-----------------VFFSSSKQVRY  298

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
              E +   Q G P         + LHG +K   R   + +F K     L  TD+ ARGID
Sbjct  299  VYETFRTLQPGIP--------LLHLHGKQKQGARMDVVSKFSKASSSCLFATDIVARGID  350

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
               V +V+ V  P++   Y+HR+GR  R  + G A+  +   +E
Sbjct  351  FPAVHWVVQVDCPEDAATYIHRVGRSARFGKSGKALLFLTPTEE  394


 Score = 48.9 bits (115),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 40/65 (62%), Gaps = 0/65 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++ F E+ +     + ++   ++  TD+Q  +IP  L G D+L AA TGSGKT AF +PV
Sbjct  38   VSKFEELPLSEATIEGLKNSHYVTCTDVQKRAIPPALQGHDLLGAARTGSGKTLAFLVPV  97

Query  61   IQIVY  65
            ++ ++
Sbjct  98   LECLF  102


>sp|A3GHW9|ROK1_PICST ATP-dependent RNA helicase ROK1 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=ROK1 PE=3 SV=1
Length=558

 Score = 85.5 bits (210),  Expect = 5e-16, Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 64/118 (54%), Gaps = 8/118 (7%)

Query  544  CLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI  603
             +H +R P +R++ ++RFK GD+  LI TDV ARG+D  GV  VIN  +P   Q YVHRI
Sbjct  397  VIHAERTPKQREEVIKRFKNGDIWVLITTDVLARGVDFKGVNMVINYDVPQTAQAYVHRI  456

Query  604  GRVGRAERMGLAISLVATEKEKVWYHVCS-SRGKGCYNTRLKEDGGCTIWYNEMQLLS  660
            GR GR  + G A++    E ++    + +  +  GC       + G + W   M  +S
Sbjct  457  GRTGRGGKAGRAVTFFTKEDDQAVKPIINVMKQSGC-------EAGFSGWMENMTKMS  507


 Score = 53.5 bits (127),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 44/158 (28%), Positives = 84/158 (53%), Gaps = 10/158 (6%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGTPG  348
            L++ P+ ELA Q    ++   +     KL   ++   +A +    +++ +  DI+V TP 
Sbjct  198  LVISPTNELAIQIFQELQILTR---GKKLNVAILSKQLANKLNNDIVKASKYDIIVSTPL  254

Query  349  RLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSA  408
            RL D+V   K++LS+V  LV+DEAD L  QG   F+ +  + +   T    +++  + SA
Sbjct  255  RLIDIVKNEKVDLSKVEQLVIDEADKLFDQG---FVEQTDDILSHCTY--TKIRKSMFSA  309

Query  409  TLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVV  446
            T+ S  V++++  IM  P  V +  +++  +T+   +V
Sbjct  310  TIPS-GVEEMAHSIMRDPIRVIIGRKEAASNTIDQKLV  346


 Score = 51.2 bits (121),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 24/44 (55%), Positives = 32/44 (73%), Gaps = 0/44 (0%)

Query  19   EMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            E +++ PT IQ ES+P+ L G D++  A TGSGKT AF IP+IQ
Sbjct  137  EAEFVEPTAIQCESLPISLSGRDLIACAPTGSGKTLAFLIPLIQ  180


>sp|Q6IMY8|HNRPU_RAT Heterogeneous nuclear ribonucleoprotein U 
OS=Rattus norvegicus OX=10116 GN=Hnrnpu PE=1 SV=1
Length=798

 Score = 85.5 bits (210),  Expect = 7e-16, Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 92/173 (53%), Gaps = 26/173 (15%)

Query  102  FAIGSDGLCCQSREVKE----WHGCRATKGLMKGK--------------HYY--EVSCHD  141
            F I  D L   S  ++     W G RA+ G+ KGK              H Y  ++  H+
Sbjct  273  FKISRDRLSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVRHLYTKDIDIHE  332

Query  142  QGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCY--LDID  199
                R+GWS   + + LG ++F +G+   G K+ N + ++YGE+F  +D I C+   + D
Sbjct  333  ---VRIGWSLTTSGMLLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVITCFANFETD  389

Query  200  KGHVKFSKNGKDLGLAFEIPPH-MKNQALFPACVLKNAELKFNFGEEEFKFPP  251
            +  + ++KNG+DLG+AF+I    + ++ LFP  +  N  ++FNFG++E  + P
Sbjct  390  EVELSYAKNGQDLGVAFKISKEVLADRPLFPHVLCHNCAVEFNFGQKEKPYFP  442


>sp|Q5XPI3|RN123_MOUSE E3 ubiquitin-protein ligase RNF123 OS=Mus 
musculus OX=10090 GN=Rnf123 PE=1 SV=1
Length=1314

 Score = 85.9 bits (211),  Expect = 7e-16, Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 98/226 (43%), Gaps = 10/226 (4%)

Query  123  RATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLD----LGTDKFGFGFGGTGKKSHNKQ  178
            R+T  + KGK  YEV    QGL ++GW T+    +    +G     + + G   +  N  
Sbjct  125  RSTTCVYKGKWVYEVLISSQGLMQIGWCTINCRFNQEEGVGDTHNSYAYDGNRVRKWNVT  184

Query  179  FDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAE-  237
              NYG+ +   D + C +D+D G + F  NG  LG AFE        A FPA  L   E 
Sbjct  185  TTNYGKAWAAGDIVSCLIDLDDGTLSFCLNGVSLGTAFENLSRGLGMAYFPAISLSFKES  244

Query  238  LKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQH-SGNAQVTQTKFLPNAPKALIVEPSR  296
            + FNFG    ++P   GF  L   P   +V++Q   G  Q   +  L      L+   S 
Sbjct  245  VAFNFGSRPLRYPVA-GFRPLQDPPFADLVRAQRLLGCFQAVLSVELDPVEGRLVETESS  303

Query  297  ELAEQTLNNIKQFKKYIDN---PKLRELLIIGGVAARDQLSVLENG  339
            E   Q    +     +I +   P LR++ ++  V     L V+E G
Sbjct  304  EWQLQGQPTVLLTLAHIFHHFAPLLRKVYLVEAVLMSFLLGVVEKG  349


>sp|Q5XPI4|RN123_HUMAN E3 ubiquitin-protein ligase RNF123 OS=Homo 
sapiens OX=9606 GN=RNF123 PE=1 SV=1
Length=1314

 Score = 85.9 bits (211),  Expect = 7e-16, Method: Compositional matrix adjust.
 Identities = 49/154 (32%), Positives = 72/154 (47%), Gaps = 6/154 (4%)

Query  123  RATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLD----LGTDKFGFGFGGTGKKSHNKQ  178
            R+T  + KGK  YEV    QGL ++GW T+    +    +G     + + G   +  N  
Sbjct  125  RSTTCVYKGKWLYEVLISSQGLMQIGWCTISCRFNQEEGVGDTHNSYAYDGNRVRKWNVT  184

Query  179  FDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAE-  237
              NYG+ +   D + C +D+D G + F  NG  LG AFE        A FPA  L   E 
Sbjct  185  TTNYGKAWAAGDIVSCLIDLDDGTLSFCLNGVSLGTAFENLSRGLGMAYFPAISLSFKES  244

Query  238  LKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQH  271
            + FNFG    ++P   G+  L   P   +V++Q 
Sbjct  245  VAFNFGSRPLRYPVA-GYRPLQDPPSADLVRAQR  277


>sp|Q9D0R4|DDX56_MOUSE Probable ATP-dependent RNA helicase DDX56 
OS=Mus musculus OX=10090 GN=Ddx56 PE=1 SV=1
Length=546

 Score = 84.7 bits (208),  Expect = 8e-16, Method: Compositional matrix adjust.
 Identities = 95/352 (27%), Positives = 147/352 (42%), Gaps = 60/352 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARD---QLSVLENGVD  341
             A + L++ P++ELA Q    I+Q   Y      R++ +    AA D   Q +VL    D
Sbjct  81   QAVRGLVLVPTKELARQAQAMIQQLAAYCA----RDVRVANVSAAEDSASQRAVLMEKPD  136

Query  342  IVVGTPGRLDDLVSTGKLNLS-QVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR  400
            +VVGTP R+   +    L L   +  LV+DEAD L S G+ D +  +   +P++      
Sbjct  137  VVVGTPSRVLSHLQQNTLKLRDSLELLVVDEADLLFSFGFEDELKSLLCHLPRI------  190

Query  401  LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK-GEDSVPDTVHHVVVPVNPKTDRLWERL  459
             Q  + SAT +  DV+ L E ++H P  + L+  +   PD +    V    + D+     
Sbjct  191  YQAFLMSATFNE-DVQTLKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLY  249

Query  460  ---------GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH---KMD  507
                     GK+ +  + +      R      E +S    +L GE  +R+ + H   + +
Sbjct  250  ALLKLSLIRGKALLFVNTLERGYRLRLFL---EQFSIPSCVLNGELPLRS-RCHIISQFN  305

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
            Q +  C    D + L         GP  K          G R+    K N     +  V 
Sbjct  306  QGLYDCVIATDAEIL---------GPQVK----------GKRRGRGSKGNKASDPESGV-  345

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
                    ARGID H V  V+N  LP   + YVHR GR  RA   G+ ++ V
Sbjct  346  --------ARGIDFHHVSAVLNFDLPPTAEAYVHRAGRTARANNPGIVLTFV  389


 Score = 66.2 bits (160),  Expect = 6e-10, Method: Compositional matrix adjust.
 Identities = 30/59 (51%), Positives = 41/59 (69%), Gaps = 0/59 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           F  MG+ P + QAV ++ W  PT IQ ++IPL L G D+L  A TGSGKT A++IP++Q
Sbjct  9   FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQ  67


>sp|Q8VEK3|HNRPU_MOUSE Heterogeneous nuclear ribonucleoprotein 
U OS=Mus musculus OX=10090 GN=Hnrnpu PE=1 SV=1
Length=800

 Score = 85.5 bits (210),  Expect = 8e-16, Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 92/173 (53%), Gaps = 26/173 (15%)

Query  102  FAIGSDGLCCQSREVKE----WHGCRATKGLMKGK--------------HYY--EVSCHD  141
            F I  D L   S  ++     W G RA+ G+ KGK              H Y  ++  H+
Sbjct  275  FKISRDRLSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVRHLYTKDIDIHE  334

Query  142  QGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCY--LDID  199
                R+GWS   + + LG ++F +G+   G K+ N + ++YGE+F  +D I C+   + D
Sbjct  335  ---VRIGWSLTTSGMLLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVITCFANFETD  391

Query  200  KGHVKFSKNGKDLGLAFEIPPH-MKNQALFPACVLKNAELKFNFGEEEFKFPP  251
            +  + ++KNG+DLG+AF+I    + ++ LFP  +  N  ++FNFG++E  + P
Sbjct  392  EVELSYAKNGQDLGVAFKISKEVLADRPLFPHVLCHNCAVEFNFGQKEKPYFP  444


>sp|Q0DLB9|RH17_ORYSJ DEAD-box ATP-dependent RNA helicase 17 OS=Oryza 
sativa subsp. japonica OX=39947 GN=RH17 PE=2 SV=2
Length=591

 Score = 84.7 bits (208),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 147/354 (42%), Gaps = 39/354 (11%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            AL++ P+REL  Q     +Q         L    I+GG     + + L  G+ I++ TPG
Sbjct  101  ALVLVPTRELCLQVYGIAQQLVHRFH--WLVPGYIMGGENRAKEKARLRKGISILIATPG  158

Query  349  RL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI----------NRMHNQIPQVTSD  397
            RL D L  T       +R++V DEAD +L  G+   +          N   NQ       
Sbjct  159  RLLDHLQHTSSFVYPNMRWIVFDEADSILELGFGKALEDILEHLGSRNDTSNQNKNKMEP  218

Query  398  GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWE  457
             KR Q ++ SATL+   V +L++  +  P  + L  ++S     +H  +  + +     E
Sbjct  219  MKR-QNLLLSATLNE-KVNRLAKISLKNPVMIGLDEQNSSAHGKNHTSLLSDDE-----E  271

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEY------AVRAIKEHKMDQAII  511
             + + H  T +    D   P     ++    +K+  G         ++++ E ++   ++
Sbjct  272  EILEKHNVTVEQAVDDFKLPA----QLVQRYVKVSCGSRLAILLTILKSLFERQLSHKVV  327

Query  512  FCRTKIDCDNLEQYFIQQ-------GGGPDKKGHQFSCVC--LHGDRKPHERKQNLERFK  562
               +  D  +     + Q           DKK    SC    LHG+    +RK++   F 
Sbjct  328  VFLSTCDSVDFHHTVLSQLEWSPGLQLDTDKKQKFISCKVFRLHGNMDQDDRKKSFLGFS  387

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAI  616
                  L+ TDVAARG+D   V  +I    P E   YVHR+GR  R    G A+
Sbjct  388  SEKSAILVSTDVAARGLDFPKVKCIIQYDSPGEASEYVHRVGRTARIGEKGEAL  441


 Score = 50.4 bits (119),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 22/63 (35%), Positives = 43/63 (68%), Gaps = 1/63 (2%)

Query  3   AFSEMGVMPEI-AQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
           +F+++G+ P + A   ++M +  PT IQA++IP+ + G  +L+ A TG+GKT A+  P++
Sbjct  24  SFTDLGLHPTLCAHLQDKMGFQAPTRIQAQAIPVAMSGQHMLVKAATGTGKTLAYLAPIV  83

Query  62  QIV  64
            ++
Sbjct  84  HLL  86


>sp|A7ESL8|DBP4_SCLS1 ATP-dependent RNA helicase dbp4 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=dbp4 PE=3 SV=1
Length=808

 Score = 85.1 bits (209),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 88/342 (26%), Positives = 148/342 (43%), Gaps = 65/342 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            ALI+ P+RELA Q    +++  +Y         LIIGG + +++   L   ++I+V TPG
Sbjct  124  ALIISPTRELAIQIFEVLRKIGRY---HTFSAGLIIGGRSLQEERERL-GRMNILVCTPG  179

Query  349  R-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            R L  +  T   ++  ++ LVLDEAD ++  G+   ++ +   +P      K+ Q ++ S
Sbjct  180  RMLQHMDQTAAFDVDNLQMLVLDEADRIMDMGFQTSVDAILEHLP------KQRQTMLFS  233

Query  408  ATLHSFDVKKLSEKIMHFPTWVDL--KGEDSVPDTV--HHVVVPVNPKTDRLWERLGKSH  463
            AT  +  V  L+   +  P +V +      + P T+  H+ VVP       L E+L    
Sbjct  234  AT-QTKKVSDLARLSLKEPEYVAVHEAASSATPTTLQQHYCVVP-------LPEKL----  281

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                      NT  G     + ++ I  +     VR + E                 +L 
Sbjct  282  ----------NTLFGFIRANLKAKIIVFMSSGKQVRFVYE-----------------SLR  314

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
                 Q G P         + LHG +K   R     +F       +  TDV ARG+D   
Sbjct  315  HL---QPGIP--------LLHLHGRQKQTARLDITSKFSSSKNSCIFATDVVARGLDFPA  363

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            V +VI +  P++   Y+HR+GR  R  ++G A+  +   +E+
Sbjct  364  VDWVIQLDCPEDADTYIHRVGRTARYGKVGRAVLFLDPSEEE  405


 Score = 54.7 bits (130),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 26/62 (42%), Positives = 42/62 (68%), Gaps = 0/62 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FSE+ +    +  +E   +   TD+Q++++PL L G D+L AA+TGSGKT AF +PV++ 
Sbjct  51   FSELPLSGPTSSGLEASHFKTLTDVQSKAVPLALKGKDILGAAKTGSGKTLAFLVPVLEN  110

Query  64   VY  65
            +Y
Sbjct  111  LY  112


>sp|A5DIX5|ROK1_PICGU ATP-dependent RNA helicase ROK1 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=ROK1 PE=3 
SV=2
Length=537

 Score = 84.3 bits (207),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 67/128 (52%), Gaps = 8/128 (6%)

Query  539  QFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQN  598
            + +   +H +R P +R++ + RFK GD   LI TDV ARG+D  GV  VIN  +P   Q 
Sbjct  376  KLNVEVIHAERTPKQREEAIRRFKNGDAWVLITTDVLARGVDFKGVNLVINYDVPQTSQA  435

Query  599  YVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS-SRGKGCYNTRLKEDGGCTIWYNEMQ  657
            YVHRIGR GR  + G A++    E +     V +  +  GC+        G + W   M+
Sbjct  436  YVHRIGRTGRGGKEGKAVTFFTKEDKLAIKPVLNVMKQSGCHE-------GYSEWMESME  488

Query  658  LLSEIEEH  665
             L++ E+ 
Sbjct  489  KLTKKEKQ  496


 Score = 48.5 bits (114),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 29/81 (36%), Positives = 42/81 (52%), Gaps = 1/81 (1%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTG  84
            PT IQ E+IP    G D++  A TGSGKT A+ IP+ Q +  + K +  G +G     T 
Sbjct  129  PTAIQCEAIPASAEGRDLIACAPTGSGKTLAYLIPMAQALISSPKTKNYGIRGVVIAPTN  188

Query  85   ASVLNKWQ-MNPYDRGSAFAI  104
               +  +Q + P  RGS   +
Sbjct  189  ELAIQIYQTLAPMCRGSNLNV  209


 Score = 43.9 bits (102),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 30/86 (35%), Positives = 48/86 (56%), Gaps = 6/86 (7%)

Query  338  NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD  397
            N  D+++ TP RL DLV   +++LS+V  LV+DEAD L   G   F+ +    +   T  
Sbjct  228  NKFDVLICTPLRLIDLVKKEQVDLSKVEHLVIDEADKLFDHG---FVEQTDEILSHCTLP  284

Query  398  GKRLQVIVCSATLHSFDVKKLSEKIM  423
             +R  +   SAT+ S  V++++  IM
Sbjct  285  TRRTSMF--SATIPS-GVEEMANSIM  307


>sp|A5DAR2|DBP7_PICGU ATP-dependent RNA helicase DBP7 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP7 PE=3 
SV=3
Length=747

 Score = 85.1 bits (209),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 159/360 (44%), Gaps = 46/360 (13%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            A+++ P+RELA Q    ++   +   + ++   ++IGG   + + + +  GV+I+V TPG
Sbjct  215  AIVLVPTRELANQIYGVLETLTRC--HHQIVPGIVIGGEKKKSEKARIRKGVNILVATPG  272

Query  349  RLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH------NQIPQVTSD----  397
            RL D + +T  L+LSQ+R+L+LDE D L+  G+ + I ++       ++I + T      
Sbjct  273  RLADHIENTTSLDLSQLRYLILDEGDRLIDLGFEETITKITDTITRCSRISESTQKWQGL  332

Query  398  -GKRLQVIVCSATLHSFDVKKLSEKIMHFPTW-------------VDLKGEDSVPDTVHH  443
              KR+ V+ CSAT+ + +V+KL   I++ P               +D K       T   
Sbjct  333  PTKRVNVL-CSATMEN-NVEKLGSIILNNPEQISIDTSKSREGDEIDSKSMAPAQLTQRV  390

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTR-----PGANSPEMWSEAIKILKGEYAV  498
            VVVP   +   L   L K   +T    + +  R       ++S     EA K    E+  
Sbjct  391  VVVPAKLRLVTLSAVL-KEVAKTAPTSSTEIVRTIVFFSCSDSVNFHYEAFKRNGSEFRK  449

Query  499  RAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNL  558
                E    + +     + + +  +    +    P    +      LHG      R   L
Sbjct  450  ARNAETNRFEMVTVGEDEANAEGSDTEIPKISSAPTISANSV-VYKLHGSLTQQVRTSTL  508

Query  559  ERFKKG----------DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
            + F +           +   L+CTDVA+RG+D+  +  V+    P   Q+++HRIGR  R
Sbjct  509  QSFVQAVPFDNSENNYNHLILLCTDVASRGLDLPNISSVVEYDPPFSVQDHLHRIGRTAR  568


 Score = 37.7 bits (86),  Expect = 0.42, Method: Compositional matrix adjust.
 Identities = 19/55 (35%), Positives = 32/55 (58%), Gaps = 1/55 (2%)

Query  17   VEEMDWLLPTDIQAESIPLILGGG-DVLMAAETGSGKTGAFSIPVIQIVYETLKD  70
             E + +  PT IQ   IP +L    D+ + A+TGSGKT +F +P++  + +  K+
Sbjct  151  TESLRFKNPTQIQKSVIPSLLSTSRDLFVKAQTGSGKTLSFLLPILHKLMQEKKN  205


>sp|Q00839|HNRPU_HUMAN Heterogeneous nuclear ribonucleoprotein 
U OS=Homo sapiens OX=9606 GN=HNRNPU PE=1 SV=6
Length=825

 Score = 84.7 bits (208),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 91/173 (53%), Gaps = 26/173 (15%)

Query  102  FAIGSDGLCCQSREVKE----WHGCRATKGLMKGK--------------HYY--EVSCHD  141
            F I  D L   S  ++     W G RA+ G+ KGK              H Y  ++  H+
Sbjct  299  FKISRDRLSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVRHLYTKDIDIHE  358

Query  142  QGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKG  201
                R+GWS   + + LG ++F +G+   G K+ N + ++YGE+F  +D I C+ + +  
Sbjct  359  ---VRIGWSLTTSGMLLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVITCFANFESD  415

Query  202  HVK--FSKNGKDLGLAFEIPPH-MKNQALFPACVLKNAELKFNFGEEEFKFPP  251
             V+  ++KNG+DLG+AF+I    +  + LFP  +  N  ++FNFG++E  + P
Sbjct  416  EVELSYAKNGQDLGVAFKISKEVLAGRPLFPHVLCHNCAVEFNFGQKEKPYFP  468


>sp|Q6C193|SPB4_YARLI ATP-dependent rRNA helicase SPB4 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=SPB4 
PE=3 SV=1
Length=626

 Score = 84.3 bits (207),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 96/376 (26%), Positives = 153/376 (41%), Gaps = 80/376 (21%)

Query  289  ALIVEPSRELAEQT----------------------LNNIKQFKKYIDNPK-LRELLIIG  325
            +++V P+RELA QT                      L   K+ K     PK +R  LI+G
Sbjct  81   SVVVSPTRELARQTYEVLQSILEMGCPEADASDKITLEKKKKGKAAPTMPKKIRGQLIMG  140

Query  326  G--VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDF  383
            G   +  D  + L +   I+V TPGRL +L+   ++  S    LVLDEAD LL  G+   
Sbjct  141  GDLPSHMDLKNFLRDKPQIIVATPGRLLELLRAPQIKTSAFDSLVLDEADRLLDLGFGRD  200

Query  384  INRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK----GEDSVPD  439
            I  + N +P+    G      + SAT+    ++ L +  +  P  + +K     E   P 
Sbjct  201  ITSIINILPKQRRTG------LFSATITDA-IQNLVKIGLRNPVKIVVKVGGKKEQKTPL  253

Query  440  TVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVR  499
            ++    V + P+     E+L                                    YA+ 
Sbjct  254  SLGLSYVVLEPR-----EKLA-----------------------------------YALN  273

Query  500  AIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLE  559
             +  +   +AI++  T       +Q F     G   +   +    LHG      R + L 
Sbjct  274  LLSIYPYRKAIVYLPTCAAVTYYQQMFSHLNEG---REEPYEIYGLHGKLPSSTRIKILN  330

Query  560  RFKK-GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            +++K G    L+ TD+AARG+DI  V  V+ +  P +   + HR GR GRA R G AI L
Sbjct  331  KYQKTGAQAILMTTDIAARGLDIPEVDLVVQLDPPSDADTFQHRCGRAGRAGRQGQAIVL  390

Query  619  VATEKEKVWYHVCSSR  634
            +   +E+ +  +   R
Sbjct  391  LHKGREEEYVDLMRVR  406


 Score = 49.3 bits (116),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 40/67 (60%), Gaps = 0/67 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           + ++ V P +   +E+  +   T +QA  IP+  G  DV++ A TGSGKT AF +P+IQ 
Sbjct  5   WKDLPVAPWLIDTMEQFGFTDMTPVQASVIPMFAGNKDVIVEAVTGSGKTIAFLVPLIQR  64

Query  64  VYETLKD  70
           +   LK+
Sbjct  65  MLNLLKE  71


>sp|A0KEG9|RHLB_AERHH ATP-dependent RNA helicase RhlB OS=Aeromonas 
hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 
/ BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 
9240 / NCTC 8049) OX=380703 GN=rhlB PE=3 SV=1
Length=429

 Score = 83.2 bits (204),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 47/112 (42%), Positives = 66/112 (59%), Gaps = 9/112 (8%)

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
            ++AI+F  TK  C+++  +        +  GH+     L GD    +R + LE F KG V
Sbjct  257  EKAIVFANTKHVCEDVHAWL-------ENDGHRVGL--LTGDVPQKKRMKILEDFTKGTV  307

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
              L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA + G +ISL
Sbjct  308  DILVATDVAARGLHIPDVTHVFNYDLPDDAEDYVHRIGRTGRAGKSGHSISL  359


 Score = 82.0 bits (201),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 88/152 (58%), Gaps = 8/152 (5%)

Query  283  LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDI  342
            L N P+A+I+ P+RELA Q  N+ +       +  L+  L  GG     QL+VLE GVDI
Sbjct  81   LINQPRAIIMAPTRELAVQIYNDAESMSA---STGLKLGLAYGGEGYDKQLAVLEQGVDI  137

Query  343  VVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            ++GT GR+ D   +  ++LS ++ +VLDEAD +   G+   I  +  ++P  T   +RL 
Sbjct  138  LIGTTGRIIDYFKSKVIDLSNIQVVVLDEADRMFDLGFIKDIRFLFRRMPPAT---ERLS  194

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE  434
            ++  SATL S  V++L+ + M+ P  V ++ E
Sbjct  195  MLF-SATL-SLRVQELAYEHMNHPEHVQIEPE  224


 Score = 46.6 bits (109),  Expect = 7e-04, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           F++MG+ PE+   +E   +   T IQA S+PL++ G D+   A+TG+GKT AF
Sbjct  11  FAQMGLEPEVLAGLESKGFHYCTPIQALSLPLLVEGHDLAGQAQTGTGKTLAF  63


>sp|Q54EC2|DDX55_DICDI Probable ATP-dependent RNA helicase ddx55 
OS=Dictyostelium discoideum OX=44689 GN=ddx55 PE=3 SV=1
Length=663

 Score = 84.0 bits (206),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 89/320 (28%), Positives = 145/320 (45%), Gaps = 70/320 (22%)

Query  321  LLIIGGVAARDQLSVLEN-GVDIVVGTPGRLDDLVSTGKLNLSQVRF-----LVLDEADG  374
            LL+IGG      L   +N G +I++GTPGR D+ ++    N  Q +F     L+LDEAD 
Sbjct  159  LLLIGGTDIYQDLVNYKNYGGNILIGTPGRTDEFLTRVVRNDQQFKFKEFEMLILDEADR  218

Query  375  LLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK--  432
            LL  G+   IN +  ++P+    G      + SAT  S +VK+L+   M  P  V +   
Sbjct  219  LLDMGFHLPINSILLKLPKQRRTG------LFSATQTS-EVKELARTGMRNPFKVSVSVK  271

Query  433  -----GEDSVPDTV--HHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW  485
                  + S+P T+   +++VPV  + ++L             VH               
Sbjct  272  HIETHEDQSIPTTLDNRYMIVPVEERLNQL-------------VH---------------  303

Query  486  SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL  545
                      + +  I ++K+   II+  T   C  ++ +F          G  F    L
Sbjct  304  ----------FLLNHIDKNKI---IIYFLT---CSTVDYFFKILQSVKVLSGKPF--FSL  345

Query  546  HGDRKPH-ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            HG + PH +R +  + F +     L+ TD+AARG+DI  V +V+    P + + +VHRIG
Sbjct  346  HG-KAPHSQRIKVFDSFSQATNGCLLSTDLAARGLDIPNVDWVLQYDSPQDPKAFVHRIG  404

Query  605  RVGRAERMGLAISLVATEKE  624
            R  R  R G A+  ++ E++
Sbjct  405  RTARMGRDGNALIFLSPEED  424


 Score = 42.4 bits (98),  Expect = 0.015, Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 25/35 (71%), Gaps = 0/35 (0%)

Query  28  IQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +Q+  IPL +   DVL+ A TGSGKT AF IP+I+
Sbjct  36  VQSAVIPLFMSNKDVLVEACTGSGKTLAFVIPIIE  70


>sp|D3ZXK7|RN123_RAT E3 ubiquitin-protein ligase RNF123 OS=Rattus 
norvegicus OX=10116 GN=Rnf123 PE=1 SV=1
Length=1318

 Score = 84.3 bits (207),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 72/153 (47%), Gaps = 6/153 (4%)

Query  123  RATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLD----LGTDKFGFGFGGTGKKSHNKQ  178
            R++  + KGK  YEV    QGL ++GW T+    +    +G     + + G   +  N  
Sbjct  123  RSSTCVYKGKWVYEVLISSQGLMQIGWCTINCRFNQEEGVGDTHNSYAYDGNRVRKWNVT  182

Query  179  FDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAE-  237
              NYG+ +   D + C +D+D G + F  NG  LG AFE        A FPA  L   E 
Sbjct  183  TTNYGKAWAAGDIVSCLIDLDDGTLSFCLNGVSLGTAFENLSRGLGMAYFPAISLSFKES  242

Query  238  LKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            + FNFG    ++P   GF  L   P   +V++Q
Sbjct  243  VAFNFGSRPLRYPVA-GFRPLQDPPFADLVRAQ  274


>sp|Q873H9|SPB4_NEUCR ATP-dependent rRNA helicase spb-4 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 
/ DSM 1257 / FGSC 987) OX=367110 GN=spb-4 PE=3 SV=1
Length=654

 Score = 83.6 bits (205),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 163/374 (44%), Gaps = 65/374 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKY-------------------IDNPKLRELLIIG  325
            N  + +I+ P+RELA Q  N +    K+                      P +   L++G
Sbjct  89   NHVQGIIISPTRELATQIYNVLVSLVKFHEPSAEAISHAKSDEKRPTATQPVVVPQLLVG  148

Query  326  GV--AARDQLSVLENGVDIVVGTPGRLDDLVSTG--KLNLSQVRFLVLDEADGLLSQGYS  381
            G   AA D  + L    ++++GTPGRL +L+S+   K   S    L++DEAD LL  G++
Sbjct  149  GTTKAAEDLGTFLRLSPNLLIGTPGRLAELLSSAYVKAPASTFEVLIMDEADRLLDMGFA  208

Query  382  DFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV  441
            + +NR+   +P+    G      + SA+L S  V++L    + +P               
Sbjct  209  NELNRILGYLPKQRRTG------LFSASL-SDAVERLITVGLLYP---------------  246

Query  442  HHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI  501
            H + V V               ++   +  +  T        + + A + +     +   
Sbjct  247  HKITVRVK-------------SLKDGGIIQERKTPMSLQMSYLVTPASQKMPAIVQLLEK  293

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
             E +  ++IIF  + +      +YF +  G     G  FS   LHG  +P  R++N ERF
Sbjct  294  LEPRPQRSIIFFSSCMAV----KYFSRILGAVLPAG--FSVTSLHGKLEPKVREKNYERF  347

Query  562  -KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
                    L+ TD+AARG+DI  V  VI    P + + ++HR GR GRA R GLA+ L+ 
Sbjct  348  VNTTSPMVLLTTDLAARGLDIPQVDLVIQHDPPTDTKVFIHRCGRAGRAGRRGLAVVLLQ  407

Query  621  TEKEKVWYHVCSSR  634
              +E+ +  +   R
Sbjct  408  PGREEGYVQLLEVR  421


 Score = 41.6 bits (96),  Expect = 0.031, Method: Compositional matrix adjust.
 Identities = 23/59 (39%), Positives = 33/59 (56%), Gaps = 4/59 (7%)

Query  8   GVMPEIAQAV----EEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            + P +AQ +      M +  PT +Q   + L  G  DV++ A TGSGKT AF IPV++
Sbjct  19  ALTPPLAQWILDYLSSMGFTQPTPVQKSCLELFRGNKDVVVEAVTGSGKTLAFLIPVVE  77


>sp|A4STJ7|RHLB_AERS4 ATP-dependent RNA helicase RhlB OS=Aeromonas 
salmonicida (strain A449) OX=382245 GN=rhlB PE=3 SV=1
Length=429

 Score = 82.0 bits (201),  Expect = 3e-15, Method: Compositional matrix adjust.
 Identities = 46/112 (41%), Positives = 66/112 (59%), Gaps = 9/112 (8%)

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
            ++AI+F  TK  C+++  +        +  GH+     L GD    +R + LE F KG +
Sbjct  257  EKAIVFANTKHVCEDVHAWL-------ENDGHRVGL--LTGDVPQKKRMKILEDFTKGTL  307

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
              L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA + G +ISL
Sbjct  308  DILVATDVAARGLHIPDVTHVFNYDLPDDAEDYVHRIGRTGRAGKSGHSISL  359


 Score = 80.5 bits (197),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 87/152 (57%), Gaps = 8/152 (5%)

Query  283  LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDI  342
            L N P+A+I+ P+RELA Q  N+         +  L+  L  GG     QL+VLE GVDI
Sbjct  81   LVNQPRAIIMAPTRELAVQIYNDADTISA---STGLKLGLAYGGEGYDKQLAVLEQGVDI  137

Query  343  VVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            ++GT GR+ D   +  ++LS ++ +VLDEAD +   G+   I  +  ++P  T   +RL 
Sbjct  138  LIGTTGRIIDYFKSKVIDLSNIQVVVLDEADRMFDLGFIKDIRFLFRRMPAPT---ERLS  194

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE  434
            ++  SATL S  V++L+ + M+ P  V ++ E
Sbjct  195  MLF-SATL-SLRVQELAYEHMNHPEHVQIEPE  224


 Score = 46.2 bits (108),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 0/53 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
           F++MG+ PE+   +E   +   T IQA S+PL++ G D+   A+TG+GKT AF
Sbjct  11  FAQMGLEPEVLAGLESKGFHYCTPIQALSLPLLVEGHDLAGQAQTGTGKTIAF  63


>sp|A1CIQ5|HAS1_ASPCL ATP-dependent RNA helicase has1 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=has1 PE=3 SV=1
Length=625

 Score = 82.8 bits (203),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 140/337 (42%), Gaps = 63/337 (19%)

Query  277  VTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
            ++  +F P N    L+V P+RELA Q     ++  ++         ++IGG   R +   
Sbjct  205  LSALRFKPRNGTGVLVVSPTRELALQIFGVARELCQHHSQTYG---IVIGGANRRAEAEK  261

Query  336  LENGVDIVVGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV  394
            L  GV++++ TPGRL D L +T       ++ LV+DEAD +L  G   F + M  QI ++
Sbjct  262  LMKGVNLLIATPGRLLDHLQNTQGFVFKNLKTLVIDEADRILEVG---FEDEMR-QIVKI  317

Query  395  TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDR  454
                +R                    + M F      K ED                  R
Sbjct  318  LPSEER--------------------QTMLFSATQTTKVEDLA----------------R  341

Query  455  LWERLGKSHIRTDDVHAKD-NTRPGANSPEMWSEAIK--ILKGEYAVRAIKEHKMDQAII  511
            +  R G  +I  D  H K+ +T  G     +  EA K  +L   +  R +K     + II
Sbjct  342  ISLRPGPLYINVD--HRKEHSTVEGLEQGYVICEADKRFLLLFSFLKRNLK-----KKII  394

Query  512  FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLIC  571
               +  +C       +     P         + LHG +K  +R      F       LIC
Sbjct  395  VFFSSCNCVKYHAELLNYIDLP--------VLELHGKQKQQKRTNTFFEFCNAKQGTLIC  446

Query  572  TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
            TDVAARG+DI  V ++I    PD+ ++Y+HR+GR  R
Sbjct  447  TDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTAR  483


 Score = 58.2 bits (139),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 43/61 (70%), Gaps = 0/61 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+E+G+  +  +A+ EM +   T+IQ  +IP +L G DVL AA+TGSGKT +F IP +++
Sbjct  145  FTELGLSEKTLKAINEMGFETMTEIQRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVEM  204

Query  64   V  64
            +
Sbjct  205  L  205


>sp|Q5AZY1|MRH4_EMENI ATP-dependent RNA helicase mrh4, mitochondrial 
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / 
CBS 112.46 / NRRL 194 / M139) OX=227321 GN=mrh4 PE=3 SV=1
Length=630

 Score = 82.8 bits (203),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 107/392 (27%), Positives = 165/392 (42%), Gaps = 79/392 (20%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN--GVDIVV  344
            P+A+I+ P+ EL  Q    +K F   +   K R  +I   +  R   S L N  G+DI+V
Sbjct  272  PRAIILVPTAELVAQVGAKLKAFAHTV---KFRSGIISSNLTPRRIKSTLFNPAGIDILV  328

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ-V  403
             TP  L  +  T    LS+V  LVLDEAD L+ + +      +      ++     LQ +
Sbjct  329  STPHLLASIAKTDPYVLSRVSHLVLDEADSLMDRSFLPISTEV------ISKAAPSLQKL  382

Query  404  IVCSATL-HSFD--VKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPK---------  451
            I CSAT+  S D  ++KL   I    T        ++P  V   VV +            
Sbjct  383  IFCSATIPRSLDSQLRKLYPDIWRLTT----PNLHAIPRRVQLGVVDIQKDPYRGNRNLA  438

Query  452  -TDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSE--AIKILKGEYAVRAIKEHKMDQ  508
              D +W  +GKS   +D+          A SP  WSE    KIL     V   +  + D+
Sbjct  439  CADVIWS-IGKSGAGSDE----------AGSP--WSEPKTKKIL-----VFVNEREEADE  480

Query  509  AIIFCRTK-IDCDNLEQ------------YFIQQGGGPD-------KKGHQFSCVCLHGD  548
               F ++K ID  +  +             F +    P        +K  Q   + +   
Sbjct  481  VAQFLKSKGIDAHSFNRDSGTRKQEEILAEFTEPAAVPTAEEILLARKQQQRENINIPFV  540

Query  549  RKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
              P    ++ ER   G V+ L+ TD+A+RGID   +  VI   +P    +++HR+GR+GR
Sbjct  541  -LPERTNRDTERRLDG-VKVLVTTDIASRGIDTLALKTVILYHVPHTTIDFIHRLGRLGR  598

Query  609  AERMGLAISLVATEKEK--------VWYHVCS  632
              + G A+ LV  +  K        VW+ + S
Sbjct  599  MGKRGRAVVLVGKKDRKDVVKEVREVWFGLDS  630


 Score = 35.8 bits (81),  Expect = 1.5, Method: Compositional matrix adjust.
 Identities = 27/72 (38%), Positives = 33/72 (46%), Gaps = 24/72 (33%)

Query  10   MPEIAQAVEEMDWLLPTDIQAESIPLILGGGDV-----------------LMAAETGSGK  52
            +P IA AV       PT IQ  +IP +L                      L+AAETGSGK
Sbjct  162  LPGIADAV-------PTPIQRVAIPRLLEDAPAKKQAKKVDDDEPQYEQYLLAAETGSGK  214

Query  53   TGAFSIPVIQIV  64
            T A+ IPVI  +
Sbjct  215  TLAYLIPVIDAI  226


>sp|Q0CF43|DBP7_ASPTN ATP-dependent RNA helicase dbp7 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dbp7 
PE=3 SV=2
Length=769

 Score = 83.2 bits (204),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 157/381 (41%), Gaps = 91/381 (24%)

Query  289  ALIVEPSRELAEQ---TLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            A+++ P+REL +Q    L  + +   +I         +IGG   + + + L  G++I+V 
Sbjct  238  AIVLAPTRELCKQISVVLEGLLRCAHWI-----VAGTVIGGEKKKSEKARLRKGLNILVA  292

Query  346  TPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD----FINRMH-----NQIPQVT  395
            TPGRL D L +T  L++S VR+LVLDE D L+  G+       I ++      ++IP V 
Sbjct  293  TPGRLADHLENTQALDVSNVRWLVLDEGDRLMELGFEQELQGIIKKLDARQRPSRIPGVP  352

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL  455
            +   +   I+CSATL   +V+KL              GE S+ D +H    P +      
Sbjct  353  T---KRTTILCSATL-KMNVQKL--------------GEMSLKDAIHIKADPAD------  388

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI---------KEHKM  506
                        D   K++       P    ++  I+  +  +  +         ++  +
Sbjct  389  ---------EDGDAKPKNDDESAFTVPAQLKQSYAIVAAKLRLVTLTAFLKRTFMRKGSV  439

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDK-----------------------KGHQFSC-  542
             +AI+F       D   + F ++    D+                       +   FS  
Sbjct  440  MKAIVFVSCADSVDFHFEVFTRKLQDSDENAEDSDASDTKEKPAAFTHNTIARATAFSNP  499

Query  543  ---VCLH---GDRKPHERKQNLERFKKG-DVRFLICTDVAARGIDIHGVPYVINVTLPDE  595
               V LH   G    H R   L  F +  D   L+CTDVA+RG+D+  V  VI       
Sbjct  500  SNPVTLHRLHGSLPQHVRTSTLASFARNKDASVLVCTDVASRGLDLPNVDLVIEYDPAFS  559

Query  596  KQNYVHRIGRVGRAERMGLAI  616
             ++++HRIGR  R  R G A+
Sbjct  560  AEDHLHRIGRTARLGRDGRAL  580


 Score = 42.4 bits (98),  Expect = 0.015, Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 45/89 (51%), Gaps = 2/89 (2%)

Query  4    FSEMGVMPEIA-QAVEEMDWLLPTDIQAESIPLILGG-GDVLMAAETGSGKTGAFSIPVI  61
            F+ +G+ P +A   + +++   PT IQ  SI  +L    D  + AETGSGKT A+ +P++
Sbjct  144  FTNLGLSPTLAAHLLTKLELKAPTAIQKASISQLLKEESDAFIQAETGSGKTLAYLLPLV  203

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNK  90
            Q +              TT   G  V+++
Sbjct  204  QRIMALSHPTNRTDATSTTDAEGQPVVHR  232


>sp|O74764|SPB4_SCHPO ATP-dependent rRNA helicase spb4 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=spb4 
PE=3 SV=1
Length=606

 Score = 82.4 bits (202),  Expect = 5e-15, Method: Compositional matrix adjust.
 Identities = 83/322 (26%), Positives = 138/322 (43%), Gaps = 60/322 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNP-----KLRELLIIGG--VAARDQLSVLENGVD  341
            ALIV P+RELA Q  N  K+   Y  +      KL   + IGG      D  S  E    
Sbjct  75   ALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTNDLASFREKNPS  134

Query  342  IVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL  401
            +V+GTPGRL++++S   ++   +  L+LDEAD L+  G+   +  + +Q+P+    G   
Sbjct  135  VVIGTPGRLNEMLS--HISSKHLEILILDEADTLIDMGFQRTLQSIISQLPKQRRTG---  189

Query  402  QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK  461
               + SAT++        + +  F     L+    V  TV                    
Sbjct  190  ---LFSATMN--------DTVSSFLKIAGLRNSVRVSVTV--------------------  218

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIK-ILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
                      K +TR   +S  + S  I  I K +  +  +   + ++AI+F  +    +
Sbjct  219  -------TSKKIDTR-TPSSLAIQSLVIPPIYKVQCMIHLLCTIEYEKAIVFFSSCASVE  270

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR-FLICTDVAARGI  579
                 F+            F  V LHG +    R +N E+FKK + +  L  TD+A+RG+
Sbjct  271  YFNSLFLTYKLP-------FEIVALHGQQVQSNRSRNFEKFKKSNKKTVLFTTDIASRGL  323

Query  580  DIHGVPYVINVTLPDEKQNYVH  601
            DI  V +V+ +  P + +++ H
Sbjct  324  DIPNVDFVLQLDPPLDPKSFSH  345


 Score = 39.3 bits (90),  Expect = 0.14, Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 0/57 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
           +F  + +   +  AV    +   T +QA +IPL L   D+++ A TGSGKT A+ +P
Sbjct  2   SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLP  58


>sp|Q94C75|RH25_ARATH DEAD-box ATP-dependent RNA helicase 25 OS=Arabidopsis 
thaliana OX=3702 GN=RH25 PE=2 SV=2
Length=563

 Score = 82.4 bits (202),  Expect = 5e-15, Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 150/344 (44%), Gaps = 65/344 (19%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA-ARDQLSVLENGVDIVVGTPG  348
            L+V P+RELA Q         KY  +P +   ++IGG     +Q  + ++   I+V TPG
Sbjct  160  LVVCPTRELACQAAAEANILLKY--HPSIGVQVVIGGTKLPTEQRRLQKSPCQILVATPG  217

Query  349  RLDDLV---STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            RL D +   S     L  V+ LVLDEAD LL  G+   I R+   +P      K+ Q  +
Sbjct  218  RLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIAAVP------KQRQTFL  271

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT+ S +V+++          V LK +    + V               E  G++H +
Sbjct  272  FSATV-SDEVRQICH--------VALKRDHEFVNCVQ--------------EGAGETHQK  308

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD----QAIIFCRTKIDCDN  521
               ++             M +   +     Y +  +K+H  D    + IIFC T +    
Sbjct  309  VSQMY-------------MIASLDRHFSLLYGL--LKKHITDNVGYKVIIFCTTAMVTRL  353

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE-RKQNLERFKKGDVRFLICTDVAARGID  580
            +           D  G     V     RKP   R +  + F+K     L+ +DV+ARG+D
Sbjct  354  VA----------DLLGKLSLNVREIHSRKPQSYRTRVSDEFRKSKSIILVTSDVSARGVD  403

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
               V  V+ + LP +++ Y+HR+GR GR  + G  + L+A  +E
Sbjct  404  YPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLAPWEE  447


 Score = 47.8 bits (112),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 23/63 (37%), Positives = 38/63 (60%), Gaps = 0/63 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +  + P   + +E+  +   T +Q  ++PLIL G D+L  A+TG+GKT AF +P I+ 
Sbjct  82   FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA  141

Query  64   VYE  66
            V +
Sbjct  142  VIK  144


>sp|A0A5F9C6I2|RN123_RABIT E3 ubiquitin-protein ligase RNF123 
OS=Oryctolagus cuniculus OX=9986 GN=RNF123 PE=1 SV=2
Length=1314

 Score = 83.2 bits (204),  Expect = 6e-15, Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 71/153 (46%), Gaps = 6/153 (4%)

Query  123  RATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLD----LGTDKFGFGFGGTGKKSHNKQ  178
            R+T  + KGK  YEV    QGL ++GW T+    +    +G     + + G   +  N  
Sbjct  125  RSTTCVYKGKWVYEVLISSQGLMQIGWCTINCRFNQEEGVGDTHNSYAYDGNRVRKWNVT  184

Query  179  FDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAE-  237
              NYG+ +   D + C +D+D G + F  NG  LG AFE        A FPA  L   E 
Sbjct  185  TTNYGKAWAAGDIVSCLIDLDDGTLSFCLNGVSLGTAFENLSRGLGMAYFPAISLSFKES  244

Query  238  LKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            + FNFG    ++P   G+  L   P   + ++Q
Sbjct  245  VAFNFGSRPLRYPVA-GYRPLQDPPCADLTRAQ  276


>sp|A1CB55|DBP7_ASPCL ATP-dependent RNA helicase dbp7 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp7 PE=3 SV=1
Length=755

 Score = 82.4 bits (202),  Expect = 6e-15, Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 158/361 (44%), Gaps = 52/361 (14%)

Query  289  ALIVEPSRELAEQ---TLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            A+++ P+REL +Q    L ++ +   +I         +IGG   + + + L  G++I+V 
Sbjct  224  AIVLAPTRELCKQISVVLESLLRCAHWIVAG-----TVIGGEKKKSEKARLRKGLNILVA  278

Query  346  TPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN---------RMHNQIPQVT  395
            TPGRL D L +T  L++S VR+LVLDE D L+  G+ + I          +  ++IP + 
Sbjct  279  TPGRLADHLENTKVLDVSNVRWLVLDEGDRLMELGFEEEIQGIVKKLDARQRPSRIPGIP  338

Query  396  SDGKRLQVIVCSATLHSFDVKKLSE-------KIMHFPTWVDLKG------EDS---VPD  439
            +   +   ++CSAT+   +V+KL E        I   P   D K       EDS   VP 
Sbjct  339  T---KRTTVLCSATM-KMNVQKLGEISLKDAVHIKADPEDEDEKARLANKEEDSAYRVPA  394

Query  440  TV--HHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYA  497
             +   + VV    +   L   L ++ +R   V         A+S +            + 
Sbjct  395  QLKQSYAVVAAKLRLVTLTAYLKRTFMRKGSVMKTIVFVSCADSVDF----------HFE  444

Query  498  VRAIKEHKMDQAIIFCRTKIDCDNLEQY-FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQ  556
            V   K+ + D A      K +   L  +  I          +  +   LHG    + R  
Sbjct  445  VFTRKKQQTDDADASDEEKTEEKPLSPHGTIAPATAFSNPSNPVTLYRLHGSLPQNVRTS  504

Query  557  NLERFKKG-DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLA  615
             L  F K  +   LICTDVA+RG+D+  V  V+        ++++HRIGR  R  R G A
Sbjct  505  TLASFAKNREPSVLICTDVASRGLDLPNVDLVVEYDPAFSAEDHLHRIGRTARVGRDGRA  564

Query  616  I  616
            +
Sbjct  565  L  565


 Score = 44.7 bits (104),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 39/63 (62%), Gaps = 2/63 (3%)

Query  4    FSEMGVMPEIA-QAVEEMDWLLPTDIQAESIPLILG-GGDVLMAAETGSGKTGAFSIPVI  61
            F+ +G+ P +A   + +++   PT IQ  SI  +L   GD  + AETGSGKT A+ +P++
Sbjct  138  FTNLGLSPSLAAHLLTKLELKAPTAIQKASISQLLKEDGDAFIQAETGSGKTLAYLLPLV  197

Query  62   QIV  64
            Q +
Sbjct  198  QRI  200


>sp|Q5BBY1|HAS1_EMENI ATP-dependent RNA helicase has1 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=has1 PE=3 SV=1
Length=609

 Score = 82.4 bits (202),  Expect = 6e-15, Method: Compositional matrix adjust.
 Identities = 90/337 (27%), Positives = 139/337 (41%), Gaps = 63/337 (19%)

Query  277  VTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
            ++  +F P N    ++V P+RELA Q     ++    +        ++IGG   R +   
Sbjct  190  LSALRFKPRNGTGVIVVSPTRELALQIFGVAREL---LTAHSQTYGIVIGGANRRAEAEK  246

Query  336  LENGVDIVVGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV  394
            L  GV++++ TPGRL D L +T       ++ LV+DEAD +L  G   F + M  QI ++
Sbjct  247  LTKGVNLLIATPGRLLDHLQNTPGFVFKNLKTLVIDEADRILEVG---FEDEMR-QIIKI  302

Query  395  TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDR  454
              +  R                    + M F      K ED                  R
Sbjct  303  LPNEDR--------------------QTMLFSATQTTKVEDLA----------------R  326

Query  455  LWERLGKSHIRTDDVHAKD-NTRPGANSPEMWSEAIK--ILKGEYAVRAIKEHKMDQAII  511
            +  R G  +I  D  H K+ +T  G     +  EA K  +L   +  R +K     + II
Sbjct  327  ISLRPGPLYINVD--HRKEHSTVEGLEQGYVICEADKRFLLLFSFLKRNLK-----KKII  379

Query  512  FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLIC  571
               +  +C       +     P         + LHG +K  +R      F       LIC
Sbjct  380  VFFSSCNCVKYHAELLNYIDLP--------VLDLHGKQKQQKRTNTFFEFCNAKQGVLIC  431

Query  572  TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
            TDVAARG+DI  V ++I    PD+ ++Y+HR+GR  R
Sbjct  432  TDVAARGLDIPAVDWIIQFDPPDDTRDYIHRVGRTAR  468


 Score = 60.5 bits (145),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 29/61 (48%), Positives = 43/61 (70%), Gaps = 0/61 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+E+G+  +  Q ++EM +   T+IQ  +IP +L G DVL AA+TGSGKT AF IP I++
Sbjct  130  FTELGLSEKTLQGIKEMGFETMTEIQQRTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEM  189

Query  64   V  64
            +
Sbjct  190  L  190


>sp|Q5AAW3|DHH1_CANAL ATP-dependent RNA helicase DHH1 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DHH1 
PE=3 SV=1
Length=549

 Score = 82.0 bits (201),  Expect = 6e-15, Method: Compositional matrix adjust.
 Identities = 43/131 (33%), Positives = 65/131 (50%), Gaps = 9/131 (7%)

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
            +++Q+IIFC +    + L +   + G         +SC   H       R +    F++G
Sbjct  266  QINQSIIFCNSTNRVELLAKKITELG---------YSCYYSHAKMPQQARNKVFHEFRQG  316

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
             VR L+C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR   +GLAI+L++    
Sbjct  317  KVRNLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDR  376

Query  625  KVWYHVCSSRG  635
               Y +    G
Sbjct  377  YSLYKIEQELG  387


 Score = 71.2 bits (173),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 79/150 (53%), Gaps = 10/150 (7%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N  +ALI+ P+RELA QT   ++   K++     + ++  GG + RD +  L + V I+V
Sbjct  97   NKVQALILVPTRELALQTSQVVRTLGKHVGT---QCMVTTGGTSLRDDIVRLHDPVHILV  153

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GTPGR+ DL +   ++LS+    V+DEAD +LS+ +   I ++    P         Q +
Sbjct  154  GTPGRVLDLAARKVVDLSECPLFVMDEADKMLSREFKGIIEQILEFFP------PNRQAL  207

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGE  434
            + SAT     VK   +K +  P  ++L  E
Sbjct  208  LFSATF-PLAVKSFMDKHLTKPYEINLMDE  236


 Score = 53.5 bits (127),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 0/70 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +F +  +  E+   + E  +  P+ IQ ESIP+ L G D+L  A+ G+GKT +F IP +Q
Sbjct  31  SFEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQ  90

Query  63  IVYETLKDQQ  72
           +V   L   Q
Sbjct  91  LVKPKLNKVQ  100


>sp|A7TNT1|DBP7_VANPO ATP-dependent RNA helicase DBP7 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=DBP7 PE=3 SV=1
Length=732

 Score = 82.4 bits (202),  Expect = 7e-15, Method: Compositional matrix adjust.
 Identities = 97/367 (26%), Positives = 153/367 (42%), Gaps = 63/367 (17%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            A+ + P+RELA Q  + + +         L   L+IGG + + + + L  G + ++GTPG
Sbjct  224  AIFITPTRELATQIYHVLSELTNCCH--YLVPCLLIGGESKKSEKARLRKGCNFIIGTPG  281

Query  349  R-LDDLVSTGKLN---LSQVRFLVLDEADGLLSQGY----SDFINRMHN------QIPQV  394
            R LD   +T  +       +R++VLDEAD L+  G+    +D +  +H+        PQ+
Sbjct  282  RILDHFQNTQSVKEQLAVSLRYVVLDEADKLMELGFEETLTDILKLIHDISLNTSVYPQL  341

Query  395  TSDGKRLQVIVCSATLHSFDVKKLSE------KIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
             S   R+  I+CSAT     V KL        K++      +     +VPD +   +  V
Sbjct  342  PS---RIMHILCSATSKG-SVTKLGNVALQNYKMISNSHVTNELENATVPDQLLQKIAIV  397

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
             PK      RL       D +H K +        +  S  +  L    +V    E     
Sbjct  398  PPKL-----RLVTLAATLDSIHRK-HIEQKKKKLDYVSRTVVFLSCSDSVNFHFE-----  446

Query  509  AIIFCRTKIDCDNL---EQYFIQQGGG----------PDKKGHQFSCVCLHGDRKPHERK  555
               F  +  +  NL       + +G            PD     F C  LHG      R 
Sbjct  447  --AFSSSDANHRNLVGESARLLTKGNDILPSFDPENDPD-----FICYKLHGSLSQQIRS  499

Query  556  QNLERFKK------GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA  609
              L+ F K      G    L CTDVA+RG+D+  +  VI +  P   ++++HRIGR  RA
Sbjct  500  STLQHFSKTNENVKGKHLVLFCTDVASRGLDLPEIGTVIELDPPFAVEDHLHRIGRTARA  559

Query  610  ERMGLAI  616
             + G ++
Sbjct  560  GKHGESL  566


 Score = 40.0 bits (92),  Expect = 0.087, Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (60%), Gaps = 3/62 (5%)

Query  18   EEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGK  75
            E+M    PT IQ   +P +L     D+ + A+TGSGKT AF++P++  +  ++K + + K
Sbjct  161  EKMRIQKPTSIQKLVLPQLLSSKNNDLFIHAQTGSGKTLAFALPILSKIL-SMKTRVDRK  219

Query  76   KG  77
             G
Sbjct  220  SG  221


>sp|Q9SW44|RH16_ARATH DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis 
thaliana OX=3702 GN=RH16 PE=2 SV=1
Length=626

 Score = 81.3 bits (199),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 137/363 (38%), Gaps = 91/363 (25%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            AP A I+ PSREL +Q    +    +     +L+ + +   ++A D  + L    +I+V 
Sbjct  120  APSAFILVPSRELCQQVYTEVSSLIELC-RVQLKAVQLTSSMSASDMRNALAGLPEILVS  178

Query  346  TPGRLDDLVSTGKLNLSQVR----FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL  401
            TP  +    + G L  + V      LVLDEAD LLS GY D +  + + IP      +R 
Sbjct  179  TPACIPKCFAAGVLEPTAVSESLSILVLDEADLLLSYGYEDNLRSVTSIIP------RRC  232

Query  402  QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK  461
            Q ++ SAT  S DV+KL + I+H P  + L       D      VP N    + W     
Sbjct  233  QCLLMSATTSS-DVEKLKKLILHNPIVLTL-----TEDNDKEEAVPSN--VQQFW-----  279

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
                   +      +       +  E ++                 + +IF  T ID   
Sbjct  280  -------ISCSAQDKLLHILALLKLEVVQ----------------KKILIFINT-IDMGF  315

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV-------  574
              + F+++ G             L+G+   + R   LE+F  G   +LI TD        
Sbjct  316  RLKLFLEKFG--------IKSAILNGELPQNSRLHILEQFNAGLFDYLIATDDNSQTKKQ  367

Query  575  ----------------------------AARGIDIHGVPYVINVTLPDEKQNYVHRIGRV  606
                                          RGID   V  VIN  +P     Y+HRIGR 
Sbjct  368  KEEAKGEANKENKKNNKRSKPKLDAEFGVVRGIDFKKVHTVINFDMPQSVTGYIHRIGRT  427

Query  607  GRA  609
            GRA
Sbjct  428  GRA  430


 Score = 50.4 bits (119),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 25/63 (40%), Positives = 41/63 (65%), Gaps = 0/63 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F E+G+   + +A+ +     PT IQ  +IP IL G DV+  A+TGSGKT A+ +P++Q
Sbjct  47   SFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQ  106

Query  63   IVY  65
             ++
Sbjct  107  KLF  109


>sp|Q6C3J3|MRH4_YARLI ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 
GN=MRH4 PE=3 SV=1
Length=514

 Score = 80.5 bits (197),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 80/339 (24%), Positives = 153/339 (45%), Gaps = 65/339 (19%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +++I+ P+ EL++Q    +KQF++ +    ++      G + ++      N +D++V TP
Sbjct  200  RSVILVPTLELSQQVGQVLKQFEEPLG---IKTFASAFGQSHQEIAKAFNNRLDVLVTTP  256

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
             +L     T + NL     LV+DEAD L    + D    + +Q+P++           C+
Sbjct  257  QKLQ---QTREKNLGGATHLVVDEADTLFDTNFIDSTTDVISQMPKLK----------CA  303

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            A + +   K    K+  F                 HVVV   P+   + +     HIR  
Sbjct  304  AFVAATVSKSFLRKLRSF---------------YPHVVVIAAPRLHAIPD-----HIRFS  343

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK--MDQAIIFCRTKIDCDNLEQY  525
             V           +P   ++ + +L+  YA+   ++ K  + + ++F   K     L++ 
Sbjct  344  VVDVN-------KAPYYNNKKVALLQALYAISHSQKQKNYVRRVVVFRNRKEHIPELKK-  395

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK-----------GDVRFLICTDV  574
            F+++ G P           LHG +  HER + +E++              +VR L+ TD+
Sbjct  396  FLEENGYP--------VDTLHGKQDLHERNEVVEKYTNMPDAADQTENARNVRVLLTTDI  447

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
            A+RG+D+  + +V+   +P +K +++HR+GR GR  R G
Sbjct  448  ASRGMDMKNLRFVVLYDVPFDKTDFIHRVGRTGRFGREG  486


>sp|Q2TZH2|MRH4_ASPOR ATP-dependent RNA helicase mrh4, mitochondrial 
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 
GN=mrh4 PE=3 SV=1
Length=628

 Score = 80.9 bits (198),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 153/372 (41%), Gaps = 60/372 (16%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN--GVDIVV  344
            P+ +I+ P+ EL  Q    +K     +   K R  +I   +  R   S L N  G+DI+V
Sbjct  267  PRVIILVPTSELVAQVGVKVKALAHTV---KYRSGMISSNLTPRRIKSTLFNPDGIDILV  323

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TP  L  +  T    LS+V  LVLDEAD L+ +    F+      I +V    ++L  I
Sbjct  324  STPHLLASIAKTEPYVLSRVSHLVLDEADSLMDRS---FLPTTTEIISKVAPSLRKL--I  378

Query  405  VCSATLHSF----------DVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDR  454
            +CSAT+             D+K+L+   +H           ++P  V   VV +  +  R
Sbjct  379  LCSATIPRSLDNLLRKRYPDIKRLTTPNLH-----------AIPRRVQLGVVDIQKEPYR  427

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
                 G  ++   DV         +   E ++  +     +  V   +  + D+   F R
Sbjct  428  -----GNRNLACADVIWSIGKAGDSEPSEPFASYVGPNIKKILVFVNEREEADEVAQFLR  482

Query  515  TK-IDCDNLEQ------------YFIQQGGGPD--------KKGHQFSCVCLHGDRKPHE  553
            +K ID  +L +             F +    P         KK  Q   +        H 
Sbjct  483  SKGIDAQSLSRDSSARKQEEILAEFTESAPPPSPEEIMLAQKKRRQEDAIPFELPEN-HN  541

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
            + +N+ R    + + L+ TD+A+RGID   V  VI   +P    +++HR+GR+GR  + G
Sbjct  542  KPENVRRL--ANTKVLVTTDLASRGIDTLPVKTVILYHVPHTTIDFIHRLGRLGRMNKRG  599

Query  614  LAISLVATEKEK  625
              I LV  +  K
Sbjct  600  RGIVLVGKKDRK  611


 Score = 33.5 bits (75),  Expect = 9.9, Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 42/86 (49%), Gaps = 22/86 (26%)

Query  1    MAAFSEMGVMPEI-----AQAVEEMDWLLPTDIQAESIPLI------------LGGGD--  41
            + +F    ++P +     +QA+  +  + PT IQ  +IP +            L  GD  
Sbjct  136  ITSFDHFPLLPVVRHSIFSQALPGLVDVTPTPIQRLAIPKLMEDSPDGKRGTKLEDGDPQ  195

Query  42   ---VLMAAETGSGKTGAFSIPVIQIV  64
                L+AAETGSGKT A+ +P++  V
Sbjct  196  YDQYLLAAETGSGKTLAYLLPLVDAV  221


>sp|Q5UQD1|YR458_MIMIV Putative ATP-dependent RNA helicase R458 
OS=Acanthamoeba polyphaga mimivirus OX=212035 GN=MIMI_R458 
PE=3 SV=1
Length=524

 Score = 80.1 bits (196),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 70/133 (53%), Gaps = 7/133 (5%)

Query  493  KGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPH  552
            K E  +  +K+ ++ QAIIF   +I+  N  +  + +   P       S    HGD    
Sbjct  370  KKEIILDLLKQCRIAQAIIFA-NRIETANEIKKLLDEQEVP------ISSAVFHGDLPAV  422

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM  612
             RK   + F +  +R LI TD+ +RG+D+ G+  V N  +PD  + Y+HR+GR GR  R 
Sbjct  423  TRKNIHKDFVENKIRLLISTDLTSRGLDVQGINVVFNFDMPDTLETYIHRVGRSGRYGRK  482

Query  613  GLAISLVATEKEK  625
            G++ISL+   + K
Sbjct  483  GVSISLILVNQNK  495


>sp|Q9SF41|RH45_ARATH DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis 
thaliana OX=3702 GN=RH45 PE=3 SV=1
Length=989

 Score = 80.5 bits (197),  Expect = 3e-14, Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 100/182 (55%), Gaps = 15/182 (8%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P  L++ P+REL +Q  ++I++F K +    +  + + GG     Q+S L+ G +IVV
Sbjct  468  DGPIGLVMAPTRELVQQIYSDIRKFSKALG---IICVPVYGGSGVAQQISELKRGTEIVV  524

Query  345  GTPGRLDDLV--STGKL-NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL  401
             TPGR+ D++  S+GK+ NL +V +LV+DEAD +   G+   I R+   +  +  D    
Sbjct  525  CTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRI---VQNIRPD---R  578

Query  402  QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV--VPVNPKTDRLWERL  459
            Q ++ SAT     V+ L+ K+++ P  + + G   V   +  +V   P + +  RL E L
Sbjct  579  QTVLFSATFPR-QVETLARKVLNKPVEIQVGGRSVVNKDITQLVEIRPESERFSRLLELL  637

Query  460  GK  461
            G+
Sbjct  638  GE  639


 Score = 61.2 bits (147),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 27/72 (38%), Positives = 45/72 (63%), Gaps = 0/72 (0%)

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
            +++++  FK      LI T VAARG+D+  +  V+N   P+  ++YVHR+GR GRA R G
Sbjct  653  QEKSISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKG  712

Query  614  LAISLVATEKEK  625
             A++ ++ +  K
Sbjct  713  CAVTFISEDDAK  724


 Score = 46.6 bits (109),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 39/57 (68%), Gaps = 0/57 (0%)

Query  6    EMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            + G+  +I   ++++++  P  IQA+++P+I+ G D +  A+TGSGKT  F +P+++
Sbjct  400  QTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLR  456


>sp|P38112|MAK5_YEAST ATP-dependent RNA helicase MAK5 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MAK5 
PE=1 SV=1
Length=773

 Score = 80.1 bits (196),  Expect = 3e-14, Method: Compositional matrix adjust.
 Identities = 97/366 (27%), Positives = 147/366 (40%), Gaps = 67/366 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQF-KKYIDNPKLRELLIIGGVAARDQLSVL--ENGVDIV  343
            P +LI  P+RELA Q  +++K+  +  +   +   L + GG++ + Q  +L  +N   IV
Sbjct  244  PISLIFTPTRELAHQVTDHLKKICEPVLAKSQYSILSLTGGLSIQKQQRLLKYDNSGQIV  303

Query  344  VGTPGRLDDLV---STGKLNLSQVRFLVLDEADGLLSQGYSD---------FINRMHNQI  391
            + TPGR  +L+   +T     S+V  L+LDEAD LL  G+ D          + R  N+ 
Sbjct  304  IATPGRFLELLEKDNTLIKRFSKVNTLILDEADRLLQDGHFDEFEKIIKHLLVERRKNR-  362

Query  392  PQVTSDGKRLQVIVCSATLHSFDVKKLSE----KIMHFPTWVDLKGEDSVPDTVHHVVVP  447
                   K  Q ++ SAT       KLS     K   F        ED +   + H+   
Sbjct  363  ENSEGSSKIWQTLIFSATFSIDLFDKLSSSRQVKDRRFKN-----NEDELNAVIQHL---  414

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANS--PEMWSEAIKILKGEYAVRAIKEHK  505
                       + K H  +  V    N     +S   E   E   + +  Y    +    
Sbjct  415  -----------MSKIHFNSKPVIIDTNPESKVSSQIKESLIECPPLERDLYCYYFLTMFP  463

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
                +IFC   ID       ++   G P           +H       R ++LERFK+  
Sbjct  464  -GTTLIFCNA-IDSVKKLTVYLNNLGIP--------AFQIHSSMTQKNRLKSLERFKQQS  513

Query  566  VR----------------FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA  609
             +                 LI +DVAARG+DI GV +VI+  LP     Y+HR GR  RA
Sbjct  514  AKQKTINHSNPDSVQLSTVLIASDVAARGLDIPGVQHVIHYHLPRSTDIYIHRSGRTARA  573

Query  610  ERMGLA  615
               G++
Sbjct  574  GSEGVS  579


 Score = 57.4 bits (137),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 39/50 (78%), Gaps = 0/50 (0%)

Query  13   IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            I Q+++ +++L PT+IQ +SIP+I+ G DV+  A TGSGKT A+ IP+++
Sbjct  182  ILQSLQNLNFLRPTEIQKKSIPVIMQGVDVMGKASTGSGKTLAYGIPIVE  231


>sp|Q6C0X2|DHH1_YARLI ATP-dependent RNA helicase DHH1 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DHH1 PE=3 
SV=1
Length=522

 Score = 79.3 bits (194),  Expect = 4e-14, Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 59/114 (52%), Gaps = 9/114 (8%)

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
            ++Q+IIFC + +  + L +   + G         +SC   H       R +    F+ G 
Sbjct  265  INQSIIFCNSTVRVELLARKITELG---------YSCYYSHAKMIQSHRNRVFHEFRNGT  315

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
             R L+C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR   +G+AI+L+
Sbjct  316  CRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGIAINLI  369


 Score = 78.2 bits (191),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 82/150 (55%), Gaps = 10/150 (7%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N  +ALI+ P+RELA QT    K   K++    ++ ++  GG   RD +  LE+ V ++V
Sbjct  95   NKIQALIMVPTRELALQTSQVCKTLGKHLG---IKVMVTTGGTNLRDDIMRLEDTVHVLV  151

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GTPGR+ DL   G  +LS+    ++DEAD LLS  ++  I ++ +  P+        Q++
Sbjct  152  GTPGRVLDLAGKGVADLSESPMFIMDEADKLLSPDFTPIIEQVLHFFPE------DRQIL  205

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGE  434
            + SAT     VK   ++ +H P  ++L  E
Sbjct  206  LFSATF-PLTVKAFMDRNLHKPYEINLMDE  234


 Score = 48.9 bits (115),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 0/63 (0%)

Query  2   AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             F +  +  E+   + E  +  P+ IQ E+IP+ L G D+L  A+ G+GKT AF IP +
Sbjct  28  TGFEDFFLKRELLMGIFEAGFENPSPIQEEAIPIALAGRDILARAKNGTGKTAAFVIPAL  87

Query  62  QIV  64
           Q V
Sbjct  88  QQV  90


>sp|Q6ATJ8|RH16_ORYSJ DEAD-box ATP-dependent RNA helicase 16 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os03g0728800 PE=2 
SV=1
Length=670

 Score = 79.7 bits (195),  Expect = 4e-14, Method: Compositional matrix adjust.
 Identities = 94/379 (25%), Positives = 159/379 (42%), Gaps = 38/379 (10%)

Query  264  GYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLI  323
             Y++   H       + +   +AP   I+ P+REL +Q  N      ++  + KL+ + +
Sbjct  145  AYLLPMLHELLKLSAEGRIRKSAPNVFILVPTRELCQQVHNEASSLLEFCTS-KLKVVQV  203

Query  324  IGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVR----FLVLDEADGLLSQG  379
               ++ +D    L    +I+V TP  +   +S G +  S ++     ++LDEAD LLS  
Sbjct  204  NASMSDKDIKVALSGPPNILVTTPACVASCISKGIIRGSSIKESLSMMILDEADLLLSYR  263

Query  380  YSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFP-----TWVDLKGE  434
              D I  +   IP      +  Q I+ SAT  S D++KL++ ++H P     T V    +
Sbjct  264  CEDDIKALVPHIP------RSCQSILMSAT-SSADIEKLTKLLLHNPFILTLTEVGHAKD  316

Query  435  DSVPDTVHHVVVPVNPKTDRLWER-LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK  493
            D +P  V    +  + K   L+   L K  +    V    N+   A    ++ E   I  
Sbjct  317  DLIPKNVQQFWISCDAKDKMLYILVLLKLELIQKKVLIFVNSIDSAFKLRLFLEKFGIRS  376

Query  494  GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
                    +  ++     F     D      Y I       K+  Q +     G++K   
Sbjct  377  SVLNAELPQNSRLHIIQAFNARLFD------YLIATDDNKSKEERQAN----KGNKKDSR  426

Query  554  --RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
              RKQ  +     D  F +      RGID   V  V+N  +P +   YVHR+GR GRA +
Sbjct  427  VSRKQLQQTL---DAEFGVV-----RGIDFKNVFTVVNYDMPPDPAGYVHRVGRTGRANK  478

Query  612  MGLAISLVATEKEKVWYHV  630
             G +ISLV+ ++  ++  +
Sbjct  479  TGASISLVSPKENGIFEDI  497


 Score = 55.1 bits (131),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 31/78 (40%), Positives = 49/78 (63%), Gaps = 3/78 (4%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F E+G+  ++ +A+ +      T IQ E+IPLIL G DV+  A+TGSGKT A+ +P++ 
Sbjct  93   SFDELGLDEQLKRALRKKGLDKATPIQREAIPLILEGKDVVAKAKTGSGKTFAYLLPML-  151

Query  63   IVYETLKDQQEGKKGKTT  80
              +E LK   EG+  K+ 
Sbjct  152  --HELLKLSAEGRIRKSA  167


>sp|Q7XJN0|RH17_ARATH DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis 
thaliana OX=3702 GN=RH17 PE=2 SV=1
Length=609

 Score = 79.3 bits (194),  Expect = 5e-14, Method: Compositional matrix adjust.
 Identities = 88/359 (25%), Positives = 146/359 (41%), Gaps = 46/359 (13%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            AL++ P+REL  Q    +++         +    ++GG     + + L  G+ I++ TPG
Sbjct  107  ALVIVPTRELCLQVYETLEKLLHRFH--WIVPGYVMGGEKKAKEKARLRKGISILIATPG  164

Query  349  RL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM----------HNQIPQVTSD  397
            RL D L +T       +R+++ DEAD +L  GY   I ++            +   +   
Sbjct  165  RLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQIIKLLGSGQNEQGEEDDIVPK  224

Query  398  GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG----------EDSVPDT-VHHVVV  446
            G + Q ++ SATL+   V  L++  +  P  + L              + PD+    +V+
Sbjct  225  GIQKQNLLLSATLND-KVNDLAKLSLDDPVMIGLDNTKLQQNLSIESPAAPDSDAEDMVI  283

Query  447  PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM  506
             VN   + L E  G   I +  V        GA    + S    +LK  +   A +    
Sbjct  284  HVNKSANPLSEDYG---IPSQLVQRYLRVPCGARLVALLS----VLKNLFEREASQ----  332

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQ-------FSCVC--LHGDRKPHERKQN  557
             + ++F  T+   D       +    P+ +  +         C    LHG  +  +R+  
Sbjct  333  -KVVVFFSTRDAVDFHYSLLSEFQWPPNSETEEEGTKELFLKCKTFRLHGSMEQEDRRSA  391

Query  558  LERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAI  616
               FK      L+ TDVAARG+D   V  +I    P E   YVHR+GR  R    G A+
Sbjct  392  FGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARIGEKGEAL  450


 Score = 52.4 bits (124),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 1/60 (2%)

Query  3   AFSEMGVMPEIA-QAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
           +FS +G+  +++ Q  E M +  PT +QA++IP+IL G DVL+ A TG+GKT A+  P+I
Sbjct  30  SFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLI  89


>sp|A7TT88|ROK1_VANPO ATP-dependent RNA helicase ROK1 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=ROK1 PE=3 SV=1
Length=570

 Score = 79.0 bits (193),  Expect = 6e-14, Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 147/320 (46%), Gaps = 61/320 (19%)

Query  288  KALIVEPSRELAEQT-LNNIKQFKK-YIDNPK-LRELLIIGGVAARDQLSVL-ENGVDIV  343
            K LI+ P++ELA Q  L  IK   + ++D  + L+  L+   ++A+ +  V+ +   DI+
Sbjct  203  KGLIISPTKELANQIFLECIKLSNRIFLDKKRPLQVALLSKSLSAKLRNKVISDKKYDII  262

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            V TP RL D+V    L+LSQV+ L+ DEAD L  +    F+ +  + +   +    R  +
Sbjct  263  VSTPLRLIDVVKNEALDLSQVKHLIFDEADKLFDKT---FVEQSDDILSSCSHSSLRKSM  319

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
               SAT+ S +V+++++ IM  P  V +  +++   ++   +V    +  +L        
Sbjct  320  F--SATIPS-NVEEIAKSIMMDPVRVIIGHKEAANTSIEQKLVFCGNEEGKL--------  368

Query  464  IRTDDVHAKDNTRPGANSPE--MWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
                 +  K   + G   P   ++ E+I   K  Y       H+M    ++    +D  +
Sbjct  369  -----IAIKQLVQEGEFKPPVIIFLESITRAKALY-------HEM----MYDSLNVDVIH  412

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
             E+  +Q                         R + +ERFK GD+  LI TDV ARG+D 
Sbjct  413  AERTQVQ-------------------------RNKIIERFKSGDLWCLITTDVLARGVDF  447

Query  582  HGVPYVINVTLPDEKQNYVH  601
             GV  VIN  +P   Q YVH
Sbjct  448  KGVNLVINYDVPRTAQAYVH  467


 Score = 58.2 bits (139),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 31/61 (51%), Positives = 39/61 (64%), Gaps = 0/61 (0%)

Query  544  CLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI  603
             +H +R   +R + +ERFK GD+  LI TDV ARG+D  GV  VIN  +P   Q YVHRI
Sbjct  410  VIHAERTQVQRNKIIERFKSGDLWCLITTDVLARGVDFKGVNLVINYDVPRTAQAYVHRI  469

Query  604  G  604
            G
Sbjct  470  G  470


 Score = 50.8 bits (120),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 34/53 (64%), Gaps = 2/53 (4%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKG  77
            PT IQ E+IPL L   D+L  A TGSGKT AF IP+IQ V    KD Q G KG
Sbjct  154  PTPIQCEAIPLALNNRDMLACAPTGSGKTLAFLIPLIQQVIND-KDTQ-GLKG  204


>sp|A6ZU15|ROK1_YEAS7 ATP-dependent RNA helicase ROK1 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=ROK1 PE=3 SV=1
Length=564

 Score = 78.6 bits (192),  Expect = 7e-14, Method: Compositional matrix adjust.
 Identities = 83/322 (26%), Positives = 141/322 (44%), Gaps = 65/322 (20%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLREL---LIIGGVAARDQLSVL-ENGVDIV  343
            K LI+ P++ELA Q      +    I   K R L   L+   + A+ +  V+ +   DI+
Sbjct  194  KGLIISPTKELANQIFIECFKLSHKIFLEKKRPLQVALLSKSLGAKLKNKVVSDKKYDII  253

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR--L  401
            + TP RL D+V    L+LS+V+ L+ DEAD L  + + +       Q   + S  +   L
Sbjct  254  ISTPLRLIDVVKNEALDLSKVKHLIFDEADKLFDKTFVE-------QSDDILSACREPSL  306

Query  402  QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK  461
            +  + SAT+ S +V+++++ IM  P  V +  +++    +   ++    +  +L      
Sbjct  307  RKAMFSATIPS-NVEEIAQSIMMDPVRVIIGHKEAANTNIEQKLIFCGNEEGKL------  359

Query  462  SHIRTDDVHAKDNTRPGANSPE--MWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
                   +  +   + G   P   ++ E+I   K  Y             +++ R  +D 
Sbjct  360  -------IAIRQLVQEGEFKPPIIIFLESITRAKALY-----------HELMYDRINVDV  401

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
             + E+  +Q                         R + +ERFK G++  LICTDV ARGI
Sbjct  402  IHAERTALQ-------------------------RDRIIERFKTGELWCLICTDVLARGI  436

Query  580  DIHGVPYVINVTLPDEKQNYVH  601
            D  GV  VIN  +P   Q YVH
Sbjct  437  DFKGVNLVINYDVPGSSQAYVH  458


 Score = 46.6 bits (109),  Expect = 7e-04, Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 31/53 (58%), Gaps = 2/53 (4%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKG  77
            PT IQ E IP+ L   DVL    TGSGKT AF IP++Q + +    Q  G KG
Sbjct  145  PTPIQCECIPVALNNRDVLACGPTGSGKTLAFLIPLVQQIIDD--KQTAGLKG  195


>sp|P45818|ROK1_YEAST ATP-dependent RNA helicase ROK1 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ROK1 
PE=1 SV=1
Length=564

 Score = 78.6 bits (192),  Expect = 9e-14, Method: Compositional matrix adjust.
 Identities = 83/322 (26%), Positives = 141/322 (44%), Gaps = 65/322 (20%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLREL---LIIGGVAARDQLSVL-ENGVDIV  343
            K LI+ P++ELA Q      +    I   K R L   L+   + A+ +  V+ +   DI+
Sbjct  194  KGLIISPTKELANQIFIECFKLSYKIFLEKKRPLQVALLSKSLGAKLKNKVVSDKKYDII  253

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR--L  401
            + TP RL D+V    L+LS+V+ L+ DEAD L  + + +       Q   + S  +   L
Sbjct  254  ISTPLRLIDVVKNEALDLSKVKHLIFDEADKLFDKTFVE-------QSDDILSACREPSL  306

Query  402  QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK  461
            +  + SAT+ S +V+++++ IM  P  V +  +++    +   ++    +  +L      
Sbjct  307  RKAMFSATIPS-NVEEIAQSIMMDPVRVIIGHKEAANTNIEQKLIFCGNEEGKL------  359

Query  462  SHIRTDDVHAKDNTRPGANSPE--MWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
                   +  +   + G   P   ++ E+I   K  Y             +++ R  +D 
Sbjct  360  -------IAIRQLVQEGEFKPPIIIFLESITRAKALY-----------HELMYDRINVDV  401

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
             + E+  +Q                         R + +ERFK G++  LICTDV ARGI
Sbjct  402  IHAERTALQ-------------------------RDRIIERFKTGELWCLICTDVLARGI  436

Query  580  DIHGVPYVINVTLPDEKQNYVH  601
            D  GV  VIN  +P   Q YVH
Sbjct  437  DFKGVNLVINYDVPGSSQAYVH  458


 Score = 46.6 bits (109),  Expect = 7e-04, Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 31/53 (58%), Gaps = 2/53 (4%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKG  77
            PT IQ E IP+ L   DVL    TGSGKT AF IP++Q + +    Q  G KG
Sbjct  145  PTPIQCECIPVALNNRDVLACGPTGSGKTLAFLIPLVQQIIDD--KQTAGLKG  195


>sp|A6ZL85|MAK5_YEAS7 ATP-dependent RNA helicase MAK5 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=MAK5 PE=3 SV=1
Length=769

 Score = 79.0 bits (193),  Expect = 9e-14, Method: Compositional matrix adjust.
 Identities = 96/360 (27%), Positives = 144/360 (40%), Gaps = 67/360 (19%)

Query  287  PKALIVEPSRELAEQTLNNIKQF-KKYIDNPKLRELLIIGGVAARDQLSVL--ENGVDIV  343
            P +LI  P+RELA Q  +++K+  +  +   +   L + GG++ + Q  +L  +N   IV
Sbjct  240  PISLIFTPTRELAHQVTDHLKKICEPVLAKSQYSILSLTGGLSIQKQQRLLKYDNSGQIV  299

Query  344  VGTPGRLDDLV---STGKLNLSQVRFLVLDEADGLLSQGYSD---------FINRMHNQI  391
            + TPGR  +L+   +T     S+V  L+LDEAD LL  G+ D          + R  N+ 
Sbjct  300  IATPGRFLELLEKDNTLIKRFSKVDTLILDEADRLLQDGHFDEFEKIIKHLLVERRKNR-  358

Query  392  PQVTSDGKRLQVIVCSATLHSFDVKKLSE----KIMHFPTWVDLKGEDSVPDTVHHVVVP  447
                   K  Q ++ SAT       KLS     K   F        ED +   + H+   
Sbjct  359  ENSEGSSKIWQTLIFSATFSIDLFDKLSSSRQVKDRRFKN-----NEDELNAVIQHL---  410

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANS--PEMWSEAIKILKGEYAVRAIKEHK  505
                       + K H  +  V    N     +S   E   E   + +  Y    +    
Sbjct  411  -----------MSKIHFNSKPVIIDTNPESKVSSQIKESLIECPPLERDLYCYYFLTMFP  459

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
                +IFC   ID       ++   G P           +H       R ++LERFK+  
Sbjct  460  -GTTLIFCNA-IDSVKKLTVYLNNLGIP--------AFQIHSSMTQKNRLKSLERFKQQS  509

Query  566  VR----------------FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA  609
             +                 LI +DVAARG+DI GV +VI+  LP     Y+HR GR  RA
Sbjct  510  AKQKTINHSNPDSVQLSTVLIASDVAARGLDIPGVQHVIHYHLPRSTDIYIHRSGRTARA  569


 Score = 57.4 bits (137),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 39/50 (78%), Gaps = 0/50 (0%)

Query  13   IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            I Q+++ +++L PT+IQ +SIP+I+ G DV+  A TGSGKT A+ IP+++
Sbjct  178  ILQSLQNLNFLRPTEIQKKSIPVIMQGVDVMGKASTGSGKTLAYGIPIVE  227


>sp|Q6CTN7|MAK5_KLULA ATP-dependent RNA helicase MAK5 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=MAK5 PE=3 SV=1
Length=796

 Score = 79.0 bits (193),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 100/415 (24%), Positives = 177/415 (43%), Gaps = 70/415 (17%)

Query  290  LIVEPSRELAEQTLNNIKQ-FKKYIDNPKLRELLIIGGVAARDQLSVL--ENGVDIVVGT  346
            LI  P+RELA Q  +++++ + K     K   L + GG++ + Q  +L  +    I+V T
Sbjct  293  LIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVAT  352

Query  347  PGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQI-----PQVTSDG  398
            PGR  +L+          +++  LVLDEAD LL  G+ D   ++   +      + + DG
Sbjct  353  PGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDG  412

Query  399  KRL----QVIVCSATLHSFDVKKLSEKIMHFPTWVDLK---GEDS-VPDTVHHVVVPVNP  450
            K      Q ++ SAT  S D+    +K     +W  LK   GE++ +   ++H++  +  
Sbjct  413  KPTGSGWQTMIFSATF-SLDLFTKLDKT----SWKILKTAGGENNEMEQVLNHLMKKIQF  467

Query  451  KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAI  510
            K+  +       H  T  V             E   E + + +  Y    I  +     +
Sbjct  468  KSKPVIIDTNPEHKVTSQVK------------ESLIECLPMERDLYVYYFIMMYP-GTTL  514

Query  511  IFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK-------  563
            +FC        L  +             + S   +H       R +NLE+FK+       
Sbjct  515  VFCNAIDSVKKLNAFL---------NNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSK  565

Query  564  -GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             G    LI +DVAARG+DI G+ +V++  LP     Y+HR GR  R +  G+++ ++ + 
Sbjct  566  VGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSV-MICSP  624

Query  623  KEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDI  677
            +E +       + +   +T+   +   T W N++ +L             +EPDI
Sbjct  625  QESMG---PLRKLRKVLSTKKSSNPRKTKWQNDVPMLP------------LEPDI  664


 Score = 51.6 bits (122),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 54/97 (56%), Gaps = 7/97 (7%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI-QIVYETLKDQQEGKKGKTTIKT  83
            PT+IQ +SIPL L G +++  A TGSGKT A+ IP+I Q++ +T  D+  G     T + 
Sbjct  242  PTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFTPTREL  301

Query  84   GASVLNKWQ-----MNPYDRGSAFAIGSDGLCCQSRE  115
               V +  Q     MN  ++ +  ++ + GL  Q +E
Sbjct  302  AHQVTDHLQKVWTKMNKLNKYTILSL-TGGLSIQKQE  337


>sp|Q10RI7|RH38_ORYSJ DEAD-box ATP-dependent RNA helicase 38 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os03g0158200 PE=3 
SV=1
Length=505

 Score = 77.4 bits (189),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 96/384 (25%), Positives = 164/384 (43%), Gaps = 84/384 (22%)

Query  266  IVKSQHSGNAQVT------QTKFLPN--APKALIVEPSRELAEQTLNNIKQFKKYID---  314
            ++   H+G+ + T       ++  PN    +A+ + P+RELA+Q  + + +  K+     
Sbjct  143  LIAQAHNGSGKTTCFVLGMLSRVDPNRKVTQAICICPTRELAQQNKSVLMRMGKFTGITC  202

Query  315  ----NPKLRELLIIGGVAA-RDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVL  369
                 P  ++ + I  +    DQ         +V+GT G L   ++  K+  + ++ LV 
Sbjct  203  ACAIPPAQKDYVPIAKMPKITDQ---------VVIGTSGTLMKWINHKKILTNDIKILVF  253

Query  370  DEADGLLSQ-GYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTW  428
            DEAD +L++ G+     R+   I Q ++ G   QV++ SAT +        E++  F T 
Sbjct  254  DEADHMLAEDGFRSDSERIMRDI-QRSAGG--CQVLLFSATFN--------ERVKDFVTR  302

Query  429  VDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEA  488
            V   G        + + V    K +   E++ +  ++  D  AK                
Sbjct  303  VIKDG--------NQIFVK---KEELTLEKVKQYKVQVPDERAK----------------  335

Query  489  IKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGD  548
            I ++K +         K+ Q IIF RTK    ++      +          + C  + G 
Sbjct  336  IAVIKDKIFEFG---QKVGQVIIFVRTKQSTKDVHNALTLE---------DYVCSSIQGS  383

Query  549  RKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP------DEK--QNYV  600
                ER++ ++ FK G  + LI TDV ARG D   V  VIN  +P      DE   + Y+
Sbjct  384  LDQSEREKIIQEFKNGYTKVLISTDVLARGFDQAQVNLVINYDMPIKFGTRDEPDYEVYL  443

Query  601  HRIGRVGRAERMGLAISLVATEKE  624
            HRIGR GR  R G   +L+  E +
Sbjct  444  HRIGRAGRFGRKGAVFNLLCGETD  467


 Score = 40.4 bits (93),  Expect = 0.060, Method: Compositional matrix adjust.
 Identities = 23/66 (35%), Positives = 40/66 (61%), Gaps = 3/66 (5%)

Query  2    AAFSEMGVMPEIAQAV-EEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            AAF ++ + PE+ + + +EM +  P+ IQA ++P+IL     D++  A  GSGKT  F +
Sbjct  100  AAFEDLKLTPELLKGLHDEMGFSRPSKIQAVTLPMILTPPYKDLIAQAHNGSGKTTCFVL  159

Query  59   PVIQIV  64
             ++  V
Sbjct  160  GMLSRV  165


>sp|Q0E2Q3|IF4A2_ORYSJ Putative eukaryotic initiation factor 4A-2 
OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0221300 
PE=3 SV=2
Length=416

 Score = 77.0 bits (188),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 85/359 (24%), Positives = 152/359 (42%), Gaps = 68/359 (19%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL++ P+ +LA +T N I    +++     +     GG +A +   +L  GV + VGTP
Sbjct  116  QALVLVPTHDLAHETQNVIGVLGQFLSA---KAHAFCGGTSAHEDQQILSTGVQVAVGTP  172

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
              +  ++    L    +R  VLDEAD +L +G+ D I+ +   +P  T  G        S
Sbjct  173  CHVLGMLQGRALCPDHIRMFVLDEADEVL-RGFKDQIHGIIQFLPTKTQFG------FFS  225

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            A++ S +  ++  K M+ P                 ++VP                    
Sbjct  226  ASM-SHEALEMCRKYMNKPV---------------EIIVP--------------------  249

Query  468  DVHAKDNTRPGANSPEMWSEAIK-ILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                +D    G N  + +    K   K +         ++ ++IIF  T+    +L +  
Sbjct  250  ----RDEELEGINVKQFYVNVEKEDCKLDKLCGLFDTMEITRSIIFVNTRHHAKSLTEKI  305

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                     +G  ++   +HG      R + ++ F+ G  R LI TD+  RGID+   P 
Sbjct  306  ---------RGKGYTVSAIHGGIHQRARDKAVQEFQSGSSRILITTDL--RGIDVLRAPA  354

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
             I   LP +   Y+  + + G+  R G+AIS + +  E+V+    S+  K C NT+++E
Sbjct  355  AIFYDLPTQPVCYLRHV-QSGQHGRKGVAISFITSTDERVF----STIQKFC-NTQIEE  407


>sp|Q7SBR1|MRH4_NEUCR ATP-dependent RNA helicase mrh4, mitochondrial 
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A 
/ CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=drh-15 PE=3 
SV=1
Length=625

 Score = 77.8 bits (190),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 161/402 (40%), Gaps = 87/402 (22%)

Query  270  QHSGNAQVTQ--TKFLPNA----PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLI  323
            +  G A V++   KF P+     P+ +++ P+ EL +Q  +  K+   Y    K +   +
Sbjct  248  ERRGGAPVSEWIEKFEPHPNTARPRVVVLVPTAELVDQVTSVAKKLAHYT---KFKVRPL  304

Query  324  IGGVAA-RDQLSVLEN-GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYS  381
               ++  R+Q ++    GVD++V TP  L  +  +    LS+V  LV+DEAD LL + +S
Sbjct  305  SASISPLRNQRNLYSPIGVDMIVSTPHLLATIAKSDPNVLSRVSHLVIDEADSLLDRSFS  364

Query  382  -DFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDT  440
             D  + +   +P +       Q+I+CSAT+               P  +D   E+  P  
Sbjct  365  GDTTSIVDRAMPSLK------QLILCSATI---------------PRRLDTYMEEQFP-Y  402

Query  441  VHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRA  500
            ++ +  P      R  + LG   +  D      N +  A +  +WS   +  K E     
Sbjct  403  INRITTPNLHAIPRRVQ-LGVIDVSKDPYR---NNKMLACADAIWSIGKEAAKHEGPKSE  458

Query  501  IKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLER  560
            I   ++   ++F   +     +  Y + +G            + LH D + H + + L  
Sbjct  459  IDVKRI---MVFVNERETTQQVADYLVSKG---------IDAIALHRDTEEHRKSEMLAS  506

Query  561  FKKGD-------------------------------------VRFLICTDVAARGIDIHG  583
            F   +                                      + ++ TD+A+RGID   
Sbjct  507  FTSNEPMKISRPADDDVAAAAAEGGKAGGAVSSSPTRRHLPNTKVIVATDLASRGIDTLA  566

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            V YV+   +P    +++HR+GR GR  R G  I LV  +  +
Sbjct  567  VRYVVLYDVPHTTIDFIHRLGRAGRMNRRGRGIVLVGKDDRR  608


 Score = 40.8 bits (94),  Expect = 0.049, Method: Compositional matrix adjust.
 Identities = 24/84 (29%), Positives = 42/84 (50%), Gaps = 20/84 (24%)

Query  1    MAAFSEMGVMPEIAQAVEE-----MDWLLPTDIQAESIPLILGGG---------------  40
            + AF +  ++P + +A+ +     M  + PT +Q  +IP +LG                 
Sbjct  143  IQAFDQFDLLPVVKEAIAQEALKGMTEIKPTPVQRLAIPALLGQPMGRKPRRPKSDNGRE  202

Query  41   DVLMAAETGSGKTGAFSIPVIQIV  64
            + L+AAETGSGKT A+ +P +  +
Sbjct  203  EFLLAAETGSGKTLAYLVPAVNAI  226


>sp|Q66HG7|DDX59_RAT Probable ATP-dependent RNA helicase DDX59 
OS=Rattus norvegicus OX=10116 GN=Ddx59 PE=2 SV=1
Length=589

 Score = 77.4 bits (189),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 75/348 (22%), Positives = 146/348 (42%), Gaps = 91/348 (26%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
             P ALI+ P+RELA Q     K+  + +  P+++ +L++GG+    QL  L+  V     
Sbjct  271  TPSALILTPTRELAIQIERQAKELMRGL--PRMKTVLLVGGLPLPPQLYRLQQHV-----  323

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
                                     +AD +L  G+   +  +    P   SD    Q ++
Sbjct  324  -------------------------KADTMLKMGFQQQVLDVLEHTP---SD---CQTVL  352

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVP-DTVHHVVVPVN--PKTDRLWERLGKS  462
             SAT+    + +L+++++H P  + + G+ ++P  +V  +++ V    K  +L+E L   
Sbjct  353  VSATIPD-SIDQLADQLLHNPVRI-VTGDKNLPCSSVRQIILWVEDPAKKKKLFEILNDQ  410

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
             +    V    + + GA+   + SEA++ + G                            
Sbjct  411  KLFKPPVLVFVDCKLGAD---LLSEAVQKITG----------------------------  439

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
                              S   +H ++   ER++ L+   +GD   ++ T +  RG+D+ 
Sbjct  440  -----------------LSSTSIHSEKSQVERREILKGLLEGDYEVVVSTGILGRGLDLV  482

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
             V  V+N  +P     YVH++GRVGR  + G AI+ +    +++++ V
Sbjct  483  NVKLVVNFDMPSSLDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDV  530


 Score = 49.7 bits (117),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 37/58 (64%), Gaps = 0/58 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            F   G    + Q +++  + +PT IQ + IP+ L G D+L +A+TGSGKT AF +PVI
Sbjct  205  FEHCGFPETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVI  262


>sp|Q9SIZ8|RKP_ARATH E3 ubiquitin-protein ligase RKP OS=Arabidopsis 
thaliana OX=3702 GN=RKP PE=2 SV=2
Length=1280

 Score = 78.2 bits (191),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 57/193 (30%), Positives = 88/193 (46%), Gaps = 20/193 (10%)

Query  123  RATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLD----LGTDKFGFGFGGTGKKSHNKQ  178
            RA   + KGK  YEV+    G+ ++GW+T+         +G     + F G      NK+
Sbjct  139  RANACIWKGKWMYEVALETSGIQQLGWATLACPFTDQKGVGDADDSYAFDGRRVSKWNKE  198

Query  179  FDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFE-IPPHMKNQALFPACVLKNAE  237
             + YG+ +   D IGC +D++   + F +NG  LG AF  I         +PA  L   E
Sbjct  199  AEPYGQSWVAGDVIGCCIDLNCDEIYFYRNGVSLGAAFTGIRKLGPGFGYYPAISLSQGE  258

Query  238  -LKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSR  296
              + NFG   FK+ P DGF  L +AP  +   ++            L      L+  P R
Sbjct  259  RCELNFGAYPFKY-PVDGFQPLQEAPTRFSFATE------------LLRCFSRLLDRPDR  305

Query  297  ELAEQTLNNIKQF  309
             LA+ TL+ +++F
Sbjct  306  SLAD-TLSRLRRF  317


>sp|Q9C8S9|RH48_ARATH Probable DEAD-box ATP-dependent RNA helicase 
48 OS=Arabidopsis thaliana OX=3702 GN=RH48 PE=3 SV=1
Length=798

 Score = 77.4 bits (189),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 153/340 (45%), Gaps = 63/340 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR-DQLSVLENGVDIVVGTP  347
            ALI+ P+RELA Q     K   K+ D   ++ L  IGG   + DQ  +      I++ TP
Sbjct  408  ALILCPTRELASQIAAEGKALLKFHDGIGVQTL--IGGTRFKLDQQRLESEPCQILIATP  465

Query  348  GRLDDLV---STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GRL D +   S     L  ++  ++DEAD LL  G+   + ++ + +P      ++ Q +
Sbjct  466  GRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEKIIDCLP------RQRQSL  519

Query  405  VCSATLHSFDVKKLSEKIMHFP-TWVDLKGEDSVP--DTVHH-VVVPVNPKTDRLWERLG  460
            + SAT+   +V+++S+ ++    +++D  G   V   D V    +V  +     L   L 
Sbjct  520  LFSATIPK-EVRRVSQLVLKRDHSYIDTIGLGCVETHDKVRQSCIVAPHESHFHLVPHLL  578

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
            K HI               N+P+            Y +           I+FC T +   
Sbjct  579  KEHIN--------------NTPD------------YKI-----------IVFCSTGM-VT  600

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
            +L    +++         + +   +H  +    R +  + FK+ +   L+ +DV+ARG++
Sbjct  601  SLMYTLLRE--------MKLNVREIHARKPQLHRTRVSDEFKESNRLILVTSDVSARGMN  652

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
               V  VI V +P +++ Y+HR+GR GR  + G  + L+A
Sbjct  653  YPDVTLVIQVGIPSDREQYIHRLGRTGREGKGGEGLLLIA  692


 Score = 40.0 bits (92),  Expect = 0.079, Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 35/65 (54%), Gaps = 0/65 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F E  + P   +A+     L  T +Q  ++   L G D L+ A+TG+GK+ AF +P I+ 
Sbjct  330  FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET  389

Query  64   VYETL  68
            V + +
Sbjct  390  VLKAM  394


>sp|A1DGF2|MRH4_NEOFI ATP-dependent RNA helicase mrh4, mitochondrial 
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 
/ CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 
GN=mrh4 PE=3 SV=1
Length=631

 Score = 76.6 bits (187),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 94/368 (26%), Positives = 155/368 (42%), Gaps = 53/368 (14%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL--ENGVDIVV  344
            P+A+I+ P+ EL  Q    +K     +   K R  +I   +  R   + L   +G+DI+V
Sbjct  271  PRAIILVPTSELVAQVGVKVKALSHTV---KYRSGMISSNLTPRRIKNTLFHPDGIDILV  327

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TP  L  +  T    LS+V  LVLDEAD LL + ++     +   I +     ++L  I
Sbjct  328  ATPHLLASIAKTEPYVLSRVSHLVLDEADSLLDRSFAPTTTEI---ISKAAPSLRKL--I  382

Query  405  VCSATLHSF----------DVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDR  454
            +CSAT+             D+K+L+   +H           ++P  V   VV +     R
Sbjct  383  LCSATIPRSLDNLLRKRYPDIKRLTTPNLH-----------AIPRRVQLGVVDIEKDPYR  431

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
                L  + +      A D    G  +  +  +  KIL     V   +  + D+   F R
Sbjct  432  GNRSLACADVIWSIGKAGDAESEGPYASYVAPKTKKIL-----VFVNEREEADEVAQFLR  486

Query  515  TK-IDCDNL---------EQYFIQQGGGPDKKGHQFSCVC----LHGDRKPHE--RKQNL  558
            +K ID  +L         E+   +    P         +      H D  P E  +K N 
Sbjct  487  SKGIDAQSLSRDSDARKQEEILAEFTEAPPPPTPDEILLAQKQRRHEDAIPFEMPQKTNQ  546

Query  559  ERFKK-GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAIS  617
            +  ++  + + L+ TD+A+RGID   V  VI   +P    +++HR+GR+GR  + G  + 
Sbjct  547  DSSRRLANTKVLVTTDLASRGIDTLAVKTVILYHVPHTTIDFIHRLGRLGRMGKRGRGVV  606

Query  618  LVATEKEK  625
            LV  +  K
Sbjct  607  LVGKKDRK  614


 Score = 35.0 bits (79),  Expect = 3.2, Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 41/86 (48%), Gaps = 22/86 (26%)

Query  1    MAAFSEMGVMPEI-----AQAVEEMDWLLPTDIQAESIPLILGGGDV-------------  42
            + +F +  ++P +     +QA+  +  + PT IQ  +IP +L                  
Sbjct  140  ITSFDQFQLLPVVRNSISSQALPGLVDVTPTPIQRLAIPRLLEEPKTEKKPTKADDDEPQ  199

Query  43   ----LMAAETGSGKTGAFSIPVIQIV  64
                L+AAETGSGKT A+ +PV+  V
Sbjct  200  YDQYLLAAETGSGKTLAYLLPVVDAV  225


>sp|Q6FST5|DBP6_CANGA ATP-dependent RNA helicase DBP6 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP6 PE=3 SV=1
Length=651

 Score = 75.9 bits (185),  Expect = 6e-13, Method: Compositional matrix adjust.
 Identities = 86/362 (24%), Positives = 140/362 (39%), Gaps = 85/362 (23%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGV----  340
            N  + LI+ P++ L  Q    + Q  +              G +    +S LEN      
Sbjct  277  NKLRVLIILPTKLLINQVFQTMSQLAE--------------GTSLVITVSKLENSFNEEH  322

Query  341  --------DIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP  392
                    DI + TPGRL D ++   ++L  ++FLVLDEAD LL+Q +        N IP
Sbjct  323  KRLLKTEPDIFITTPGRLVDHLTNSSISLRNLKFLVLDEADRLLNQSF-------QNWIP  375

Query  393  QVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKT  452
            +V S  K                   S+K             D +P ++  +V      T
Sbjct  376  EVMSKFK-------------------SDKF------------DQMPGSIIKMVFSATLTT  404

Query  453  DRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD-----  507
            +   E+L    +    + A D+ +     P +    ++I   +   + +   K+      
Sbjct  405  N--TEKLNDLQLYNPTLFATDSVKLYNLPPTLQEYQLQIPSAKSVYKPLYLLKLLEQLSG  462

Query  508  -QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGH----QFSCVCLHGDRKPHERKQNLERFK  562
             + ++F R+      LE            KGH    Q     ++ +    E ++ +  F 
Sbjct  463  GKTLVFVRSNESSLKLEVLLKSLI-----KGHMTTLQIVVHSINSNNSKAENRRLVTDFT  517

Query  563  K----GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            K         LI TD+ +RGIDI  +  VIN  +P   Q YVHR GR  RA + G A ++
Sbjct  518  KESLPNQTNVLITTDLMSRGIDIENIANVINYDVPISSQQYVHRCGRTARANKDGKAYNM  577

Query  619  VA  620
            + 
Sbjct  578  LV  579


 Score = 38.9 bits (89),  Expect = 0.22, Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 21/25 (84%), Gaps = 0/25 (0%)

Query  40   GDVLMAAETGSGKTGAFSIPVIQIV  64
            GD+L+ A TGSGKT A+SIP+IQ +
Sbjct  247  GDILVNASTGSGKTLAYSIPIIQTL  271


>sp|A6R918|SPB4_AJECN ATP-dependent rRNA helicase SPB4 OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=SPB4 PE=3 
SV=2
Length=676

 Score = 75.9 bits (185),  Expect = 8e-13, Method: Compositional matrix adjust.
 Identities = 86/348 (25%), Positives = 142/348 (41%), Gaps = 80/348 (23%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKY-----------------ID--NP---------KLRE  320
            A+++ P+RELA Q  N +     +                 +D  NP         K+  
Sbjct  97   AILISPTRELATQIYNVLLSLLAFHGPSAARLQRTENNSGEVDESNPASSYPPSTLKIVP  156

Query  321  LLIIGGVAA--RDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRF--LVLDEADGLL  376
             L++GG     +D  + L+   +++V TPGRL +L+S+   + SQ  F  LVLDEAD LL
Sbjct  157  QLLLGGTTTPTQDLSAFLKQSPNVLVSTPGRLLELLSSPHAHCSQSSFEVLVLDEADRLL  216

Query  377  SQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDS  436
              G+ + + ++  ++P+    G           L S  V +  ++I+     V L+    
Sbjct  217  DLGFKEDLQKILQRLPKQRRTG-----------LFSASVSEAVDQIIR----VGLRN---  258

Query  437  VPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEY  496
             P  +   V     +  R    L  +++ T   H                   K+   +Y
Sbjct  259  -PVKIAVKVKGAGLEDKRTPASLQMTYLLTPPTH-------------------KLPAVKY  298

Query  497  AVRAIKEHKMDQAIIFCRTKIDCDNLEQY-FIQQGGGPDKKGHQFSCVCLHGDRKPHERK  555
             V  +        + F      C  ++ Y  I     PD+    F+ + LHG   P  R+
Sbjct  299  IVSTLSPTPQRSILYFS----TCAAVDYYQHILPCILPDR----FTTIPLHGKHPPQVRQ  350

Query  556  QNLERFKKG-DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHR  602
            +N  RF        L+ TDVAARG+DI  V  VI +  P + + ++HR
Sbjct  351  KNFTRFVNSVTSSILLTTDVAARGLDIPAVDLVIQIDPPTDPKAFLHR  398


 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 0/50 (0%)

Query  13  IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           I  A+  M +   T +QA +IPL +   DV++ A TGSGKT AF IPV++
Sbjct  32  ILDAISAMGFSRMTPVQASTIPLFMAHKDVVVEAVTGSGKTLAFLIPVVE  81


>sp|A5DC85|DBP9_PICGU ATP-dependent RNA helicase DBP9 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP9 PE=3 
SV=2
Length=586

 Score = 75.1 bits (183),  Expect = 1e-12, Method: Compositional matrix adjust.
 Identities = 84/373 (23%), Positives = 149/373 (40%), Gaps = 91/373 (24%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            K++I+ P++ELA Q    I++   Y ++  + ++ +   V+ +  +S+L    +I++ TP
Sbjct  109  KSVILVPTKELANQVTKFIEKLLVYCNS--ITQINLATNVSDQVVVSLLSAKPEIIISTP  166

Query  348  GRLDDLVS--TGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
             RL  ++      ++L+ V  L +DE D +LS GY + + ++ + +P      + LQ  +
Sbjct  167  SRLTTVLEKHASIVDLTTVTSLAIDEVDLMLSYGYMEDLQKLDDFLPI----KRNLQTYL  222

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT++  DV  L  +    P  + L   +   +                  RL + + R
Sbjct  223  MSATVND-DVNDLKARFCTKPAIIKLNDNEENQN------------------RLVQFYAR  263

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
            T                   SE  K L   +A    K H +    +     ID     + 
Sbjct  264  T-------------------SEFDKFL---FAYVIFKLHLIKGKTLAFVNNIDRGYRLKL  301

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA----------  575
            F++Q G          C  L+ +   + R   ++ F K     LI +D +          
Sbjct  302  FLEQFG--------VRCCILNSELPVNSRLHIVDEFNKNVYNLLIASDESTEVTEQEGED  353

Query  576  ------------------------ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
                                    +RG+D   V  V+N  LP   ++YVHR+GR  RA +
Sbjct  354  DQEDSKPEKSKKKKGKKVDGEYGVSRGVDFRNVACVLNFDLPTTSRSYVHRVGRTARAGK  413

Query  612  MGLAISLVATEKE  624
             G+A+S V   KE
Sbjct  414  AGMALSFVVPVKE  426


 Score = 54.3 bits (129),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 27/53 (51%), Positives = 37/53 (70%), Gaps = 1/53 (2%)

Query  11  PEIAQAVEEMDWLLPTDIQAESIPLIL-GGGDVLMAAETGSGKTGAFSIPVIQ  62
           P + QAV ++ +  PT IQ+ +IPL L    D++  A TGSGKTGA+SIP+IQ
Sbjct  44  PRLLQAVYQLGFEKPTLIQSNAIPLSLEDKRDIIAKASTGSGKTGAYSIPIIQ  96


>sp|Q4IJ56|DBP9_GIBZE ATP-dependent RNA helicase DBP9 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=DBP9 PE=3 SV=1
Length=615

 Score = 75.1 bits (183),  Expect = 1e-12, Method: Compositional matrix adjust.
 Identities = 53/152 (35%), Positives = 85/152 (56%), Gaps = 16/152 (11%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKY----IDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            ALI+ P+RELA+Q    I+QF  +    I   KL +      V+++ Q ++L N  DIV+
Sbjct  116  ALILVPTRELADQVSKAIEQFASFCAKDISTAKLTD-----KVSSKVQRALLSNSPDIVI  170

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TP      V++  L++ ++  L+LDEAD +LS GYS+ +  +   +P      K +QV+
Sbjct  171  STPSTAWQNVNSSALSIDKLTHLILDEADLVLSYGYSEDLENLSRSVP------KGVQVM  224

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDS  436
            + SATL S +V  L       PT +DLK +++
Sbjct  225  MMSATL-SDEVDTLKGIFRRDPTLLDLKEKEA  255


 Score = 57.0 bits (136),  Expect = 5e-07, Method: Compositional matrix adjust.
 Identities = 24/62 (39%), Positives = 41/62 (66%), Gaps = 0/62 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F ++G+ P + QA+ +  +  PT +Q ++IPL L G DVL  A+ GSGKT A+ +P++ 
Sbjct  41   SFVDLGLDPRLLQAIAQQKFAKPTLVQRKAIPLALNGQDVLAKADCGSGKTAAYVLPLLS  100

Query  63   IV  64
             +
Sbjct  101  SI  102


 Score = 47.8 bits (112),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 21/44 (48%), Positives = 26/44 (59%), Gaps = 0/44 (0%)

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +RG+D   V  VIN  LP     Y HRIGR  RA + G+A+S V
Sbjct  399  SRGVDFKKVSAVINFDLPTTASAYTHRIGRTARAGQTGMALSFV  442


>sp|Q06218|DBP9_YEAST ATP-dependent RNA helicase DBP9 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP9 
PE=1 SV=1
Length=594

 Score = 74.7 bits (182),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 87/153 (57%), Gaps = 8/153 (5%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N    +I+ P+RELA+Q  N +++   Y  +  +R L I   ++     ++L +  +I+V
Sbjct  93   NGTLGIILVPTRELAQQVYNVLEKLVLYC-SKDIRTLNISSDMSDSVLSTLLMDQPEIIV  151

Query  345  GTPGRLDDLVST--GKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            GTPG+L DL+ T    ++L++++FLV+DE D +L+ GY D +N++   +P      K LQ
Sbjct  152  GTPGKLLDLLQTKINSISLNELKFLVVDEVDLVLTFGYQDDLNKIGEYLPL----KKNLQ  207

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED  435
              + SATL+  D++ L +K    P  +    E+
Sbjct  208  TFLMSATLND-DIQALKQKFCRSPAILKFNDEE  239


 Score = 48.9 bits (115),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query  2   AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGG-DVLMAAETGSGKTGAFSIPV  60
             F    +   + QA++ + +  PT IQ+ +IPL L    D++  A TGSGKT A+ IPV
Sbjct  17  TTFEAFHLDSRLLQAIKNIGFQYPTLIQSHAIPLALQQKRDIIAKAATGSGKTLAYLIPV  76

Query  61  IQIVYETLKDQQEGKKGKT  79
           I+ + E  K    G++  T
Sbjct  77  IETILEYKKTIDNGEENGT  95


 Score = 48.9 bits (115),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 0/50 (0%)

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
             +RG+D   V  V+N  LP   ++YVHR+GR  R  + G AIS V   KE
Sbjct  383  VSRGVDFKNVACVLNFDLPTTAKSYVHRVGRTARGGKTGTAISFVVPLKE  432


>sp|A7A1G0|DBP9_YEAS7 ATP-dependent RNA helicase DBP9 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DBP9 PE=3 SV=1
Length=594

 Score = 74.7 bits (182),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 87/153 (57%), Gaps = 8/153 (5%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N    +I+ P+RELA+Q  N +++   Y  +  +R L I   ++     ++L +  +I+V
Sbjct  93   NGTLGIILVPTRELAQQVYNVLEKLVLYC-SKDIRTLNISSDMSDSVLSTLLMDQPEIIV  151

Query  345  GTPGRLDDLVST--GKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            GTPG+L DL+ T    ++L++++FLV+DE D +L+ GY D +N++   +P      K LQ
Sbjct  152  GTPGKLLDLLQTKINSISLNELKFLVVDEVDLVLTFGYQDDLNKIGEYLPL----KKNLQ  207

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED  435
              + SATL+  D++ L +K    P  +    E+
Sbjct  208  TFLMSATLND-DIQALKQKFCRSPAILKFNDEE  239


 Score = 48.9 bits (115),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query  2   AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGG-DVLMAAETGSGKTGAFSIPV  60
             F    +   + QA++ + +  PT IQ+ +IPL L    D++  A TGSGKT A+ IPV
Sbjct  17  TTFEAFHLDSRLLQAIKNIGFQYPTLIQSHAIPLALQQKRDIIAKAATGSGKTLAYLIPV  76

Query  61  IQIVYETLKDQQEGKKGKT  79
           I+ + E  K    G++  T
Sbjct  77  IETILEYKKTIDNGEENGT  95


 Score = 48.9 bits (115),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 0/50 (0%)

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
             +RG+D   V  V+N  LP   ++YVHR+GR  R  + G AIS V   KE
Sbjct  383  VSRGVDFKNVACVLNFDLPTTAKSYVHRVGRTARGGKTGTAISFVVPLKE  432


>sp|A2YV85|RH29_ORYSI DEAD-box ATP-dependent RNA helicase 29 OS=Oryza 
sativa subsp. indica OX=39946 GN=OsI_028228 PE=2 SV=2
Length=851

 Score = 74.3 bits (181),  Expect = 3e-12, Method: Compositional matrix adjust.
 Identities = 49/124 (40%), Positives = 71/124 (57%), Gaps = 10/124 (8%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+R+LA QTL   +Q  K+ D   L+  LI+GG +   Q   L    DI++ TP
Sbjct  121  RALILSPTRDLATQTLKFAQQLGKFTD---LKISLIVGGDSMESQFEELAENPDIIIATP  177

Query  348  GRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            GRL   L     LNL  V ++V DEAD L S G    I ++H+ + ++ SD +  Q ++ 
Sbjct  178  GRLVHHLAEVEDLNLRTVEYVVFDEADSLFSLG---LIQQLHDILHKL-SDTR--QTLLF  231

Query  407  SATL  410
            SATL
Sbjct  232  SATL  235


 Score = 63.9 bits (154),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 39/116 (34%), Positives = 57/116 (49%), Gaps = 9/116 (8%)

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
            +Q IIF  TK   + L   F ++G  P            +G      R  ++ +F+    
Sbjct  293  EQTIIFVSTKHHVEFLNILFREEGLEPS---------LSYGAMDQEARNIHISKFRARKT  343

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
              LI TDVAARG+DI  +  V+N   P + + +VHR+GRV R  R G A + V +E
Sbjct  344  MILIVTDVAARGLDIPLLDNVVNWDFPAKPKLFVHRVGRVARQGRSGTAYTFVTSE  399


 Score = 60.5 bits (145),  Expect = 5e-08, Method: Compositional matrix adjust.
 Identities = 27/59 (46%), Positives = 38/59 (64%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  MG+  E+ + V    + +PT IQ +++PLIL G D+   A TGSGKT AF +P+IQ
Sbjct  51   FESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQ  109


>sp|Q4X1X0|MRH4_ASPFU ATP-dependent RNA helicase mrh4, mitochondrial 
OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 
101355 / FGSC A1100 / Af293) OX=330879 GN=mrh4 PE=3 SV=1
Length=631

 Score = 73.9 bits (180),  Expect = 3e-12, Method: Compositional matrix adjust.
 Identities = 92/369 (25%), Positives = 150/369 (41%), Gaps = 55/369 (15%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL--ENGVDIVV  344
            P+A+I+ P+ EL  Q    +K     +   K R  +I      R   + L   +G+DI+V
Sbjct  271  PRAIILVPTSELVAQVGVKVKALSHTV---KYRSGMISSNFTPRRIKNTLFHPDGIDILV  327

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TP  L  +  T    LS+V  LVLDEAD LL + ++     +   I +     ++L  I
Sbjct  328  ATPHLLASIAKTEPYVLSRVSHLVLDEADSLLDRSFAPTTTEI---ISKAAPSLRKL--I  382

Query  405  VCSATLHSF----------DVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDR  454
            +CSAT+             D+K+L+   +H           ++P  V   VV +     R
Sbjct  383  LCSATIPRSLDNLLRKRYPDIKRLTTPNLH-----------AIPRRVQLGVVDIEKDPYR  431

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
                L  + +      A D    G  +  +  +  KIL     V   +  + D+   F R
Sbjct  432  GNRSLACADVIWSIGKAGDAESEGPYASYVAPKTKKIL-----VFVNEREEADEVAQFLR  486

Query  515  TK-IDCDNL---------EQYFIQQGGGPDKKGHQFSCVCLHGDR--------KPHERKQ  556
            +K ID  +L         E+   +    P         +     R         P +  Q
Sbjct  487  SKGIDAQSLSRDSDARKQEEILAEFTEAPPPPSPDEILLAQKKRRYEDAIPFEMPEKANQ  546

Query  557  NLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAI  616
               R +  + + L+ TD+A+RGID   V  VI   +P    +++HR+GR+GR  + G  +
Sbjct  547  GSSR-RLANTKVLVTTDLASRGIDTLAVKTVILYHVPHTTIDFIHRLGRLGRMGKRGRGV  605

Query  617  SLVATEKEK  625
             LV  +  K
Sbjct  606  VLVGKKDRK  614


 Score = 35.0 bits (79),  Expect = 3.3, Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 41/86 (48%), Gaps = 22/86 (26%)

Query  1    MAAFSEMGVMPEI-----AQAVEEMDWLLPTDIQAESIPLILGGGDV-------------  42
            + +F +  ++P +     +QA+  +  + PT IQ  +IP +L                  
Sbjct  140  ITSFDQFQLLPVVRNSISSQALPGLVDVTPTPIQRLAIPRLLEEPKTEKKPTKADDDEPR  199

Query  43   ----LMAAETGSGKTGAFSIPVIQIV  64
                L+AAETGSGKT A+ +PV+  V
Sbjct  200  YDQYLLAAETGSGKTLAYLLPVVDAV  225


>sp|A7E436|DBP8_SCLS1 ATP-dependent RNA helicase dbp8 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=dbp8 PE=3 SV=1
Length=540

 Score = 73.6 bits (179),  Expect = 3e-12, Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 9/110 (8%)

Query  510  IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL  569
            +IFC      D L             +  +     LH      +R  NL RF+    R L
Sbjct  370  VIFCNRTATADYLTHLL---------RLLEHRVTALHSKLPQRQRIDNLGRFRASAARIL  420

Query  570  ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            + TDVAARG+DI  V  VIN  +P +  +Y+HR+GR  RA R G A++ V
Sbjct  421  VATDVAARGLDIPEVGLVINYDVPRDPDDYIHRVGRTARAGRKGEAVTFV  470


 Score = 62.0 bits (149),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 53/95 (56%), Gaps = 7/95 (7%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            AL++ P+RELA Q     +QFK       L+ +LI GG   R Q + L     +V+ TPG
Sbjct  182  ALVLTPTRELALQIY---EQFKAISSPQSLKAVLITGGSDMRPQATALAQRPHVVIATPG  238

Query  349  RLDDLVSTGKLN----LSQVRFLVLDEADGLLSQG  379
            RL D + T   +    L +VR +VLDEAD LL+ G
Sbjct  239  RLADHIRTSGEDTVCALRRVRMVVLDEADRLLASG  273


 Score = 46.6 bits (109),  Expect = 7e-04, Method: Compositional matrix adjust.
 Identities = 24/59 (41%), Positives = 35/59 (59%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F+ + V P +  ++  M    PT IQ   IP IL G D +  + TGSGKT AF++P++Q
Sbjct  113  FAALDVKPWLVASLGAMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPILQ  171


>sp|A5DR68|MRH4_PICGU ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 
566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 
GN=MRH4 PE=3 SV=2
Length=573

 Score = 73.6 bits (179),  Expect = 3e-12, Method: Compositional matrix adjust.
 Identities = 93/389 (24%), Positives = 161/389 (41%), Gaps = 92/389 (24%)

Query  288  KALIVEPSRELAEQTLNNIK---------------------QFKKYIDNP-KLREL-LII  324
            +AL+V P+ EL +Q  N ++                     ++ +++  P +L  L L I
Sbjct  213  RALVVLPTHELVDQVYNTLRSANDQKFATDEVVDPKLLSDAKYARFLKAPDQLNGLHLNI  272

Query  325  GGVAARDQLSVLENG----VDIVVGTPGRLDDLVSTGKLN-----LSQVRFLVLDEADGL  375
                A D   VL +G    VD++V TPG++  L     ++      + V++ V+DEAD L
Sbjct  273  KKFGAGDSHRVLFDGIKQRVDVLVTTPGKIQGLAKLQNVDRPFRFFNHVQYCVVDEADTL  332

Query  376  LSQGYSDFINRMHNQIPQVTSDGKRLQ----VIVCSATLHSFDVKKLSEKIMHFPTWVDL  431
            +   + D            T+  +RL     ++ CSAT+     + LS+    FP   D 
Sbjct  333  MDNSWVD----------DTTAVLRRLTKCKDLVFCSATIPKQFNRTLSK---MFP---DE  376

Query  432  KGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
            K       ++ H+  P   K  R      +  ++  D            SP   S+   +
Sbjct  377  K-------SIIHINTPALHKIPR------QIVVKIIDAQV---------SPYNGSKTRCL  414

Query  492  LKGEYAVR--AIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDR  549
             +  YA+     +   + + ++F   K D   L    +++ G   +       V + GD 
Sbjct  415  AQALYAIHNDGTEAGYVKRILVFVNEKKDVAPLVDVLVKKYGNRAE-----DIVGITGDT  469

Query  550  KPHERKQNLERFKK-----------GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQN  598
            KP ERK  LE F K             ++ L+ TD+ ARG++  G+  VI + LP+   +
Sbjct  470  KPEERKGLLEPFLKPAELVEDDIDQSKIKVLVTTDLMARGMNFVGIKNVILMDLPNTSVD  529

Query  599  YVHRIGRVGRAERMGLAISLVATEKEKVW  627
             +HR+GR GR  + G    ++  +  K W
Sbjct  530  LMHRVGRTGRMRQSGRVFVIIDKKTGKSW  558


>sp|A3BT52|RH29_ORYSJ DEAD-box ATP-dependent RNA helicase 29 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os08g0416100 PE=2 
SV=2
Length=851

 Score = 73.9 bits (180),  Expect = 3e-12, Method: Compositional matrix adjust.
 Identities = 49/124 (40%), Positives = 71/124 (57%), Gaps = 10/124 (8%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+R+LA QTL   +Q  K+ D   L+  LI+GG +   Q   L    DI++ TP
Sbjct  121  RALILSPTRDLATQTLKFAQQLGKFTD---LKISLIVGGDSMESQFEELAENPDIIIATP  177

Query  348  GRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            GRL   L     LNL  V ++V DEAD L S G    I ++H+ + ++ SD +  Q ++ 
Sbjct  178  GRLVHHLAEVEDLNLRTVEYVVFDEADSLFSLG---LIQQLHDILHKL-SDTR--QTLLF  231

Query  407  SATL  410
            SATL
Sbjct  232  SATL  235


 Score = 63.9 bits (154),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 39/116 (34%), Positives = 57/116 (49%), Gaps = 9/116 (8%)

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
            +Q IIF  TK   + L   F ++G  P            +G      R  ++ +F+    
Sbjct  293  EQTIIFVSTKHHVEFLNILFREEGLEPS---------LSYGAMDQEARNIHISKFRARKT  343

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
              LI TDVAARG+DI  +  V+N   P + + +VHR+GRV R  R G A + V +E
Sbjct  344  MILIVTDVAARGLDIPLLDNVVNWDFPAKPKLFVHRVGRVARQGRSGTAYTFVTSE  399


 Score = 60.1 bits (144),  Expect = 5e-08, Method: Compositional matrix adjust.
 Identities = 27/59 (46%), Positives = 38/59 (64%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  MG+  E+ + V    + +PT IQ +++PLIL G D+   A TGSGKT AF +P+IQ
Sbjct  51   FESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQ  109


>sp|Q9PA24|RHLB_XYLFA ATP-dependent RNA helicase RhlB OS=Xylella 
fastidiosa (strain 9a5c) OX=160492 GN=rhlB PE=3 SV=2
Length=543

 Score = 73.2 bits (178),  Expect = 3e-12, Method: Compositional matrix adjust.
 Identities = 42/111 (38%), Positives = 61/111 (55%), Gaps = 9/111 (8%)

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
            + ++F  TK+  + + +         D+ G++     L GD    +R+  L RF+KG + 
Sbjct  259  RTMVFVNTKVFVEGVARAL-------DEAGYRVGV--LSGDVPQRKRETLLNRFQKGQLE  309

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
             L+ TDVAARG+ I GV YV N  LP + ++YVHRIGR  R    G AIS 
Sbjct  310  ILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISF  360


 Score = 70.5 bits (171),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 53/144 (37%), Positives = 77/144 (53%), Gaps = 9/144 (6%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P  P+ALI+ P+RELA Q  N+  +F     N  LR  LI GGV    Q  +L  G D+V
Sbjct  82   PEDPRALILAPTRELAIQIYNDAVKFG---GNLGLRFALIYGGVDYDKQREMLRKGADVV  138

Query  344  VGTPGRLDDLVSTGK-LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            + TPGRL D +   + ++L      VLDEAD +   G+   I  +  ++P+  S     Q
Sbjct  139  IATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLPERCSR----Q  194

Query  403  VIVCSATLHSFDVKKLSEKIMHFP  426
             ++ SATL S  V +L+ + M+ P
Sbjct  195  TLLFSATL-SHRVLELAYEYMNEP  217


 Score = 42.4 bits (98),  Expect = 0.017, Method: Compositional matrix adjust.
 Identities = 21/59 (36%), Positives = 34/59 (58%), Gaps = 0/59 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           FS + + P +   +    + L T IQA ++P+ L G D+   A+TG+GKT AF + V+ 
Sbjct  11  FSSLDLHPALLTGLTRAGFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVVN  69


>sp|Q8N8A6|DDX51_HUMAN ATP-dependent RNA helicase DDX51 OS=Homo 
sapiens OX=9606 GN=DDX51 PE=1 SV=3
Length=666

 Score = 73.6 bits (179),  Expect = 4e-12, Method: Compositional matrix adjust.
 Identities = 41/130 (32%), Positives = 68/130 (52%), Gaps = 14/130 (11%)

Query  551  PHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAE  610
            P +R+  L++F++G ++ LI TD  ARGID+ GV  V+N   P   + YVHR+GR  RA 
Sbjct  541  PGQRRMILKQFEQGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAG  600

Query  611  RMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEM--QLLSEIEEHLNC  668
            + G A +L+   +E+ +  +            L E G   +  +E+  +LL  +      
Sbjct  601  KTGQAFTLLLKVQERRFLRM------------LTEAGAPELQRHELSSKLLQPLVPRYEE  648

Query  669  TISQVEPDIK  678
             +SQ+E  +K
Sbjct  649  ALSQLEESVK  658


 Score = 60.8 bits (146),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 40/109 (37%), Positives = 63/109 (58%), Gaps = 12/109 (11%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA-ARDQLSVLENGVD-----  341
            +AL+V P++ELA+Q     K F  Y D   LR  L+ G  + A++Q S+++   D     
Sbjct  283  RALVVLPTKELAQQV---SKVFNIYTDATPLRVSLVTGQKSLAKEQESLVQKTADGYRCL  339

Query  342  --IVVGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM  387
              IVV TPGRL D +  T   +L Q+RFL++DEAD ++   +  ++ R+
Sbjct  340  ADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRV  388


>sp|A5DEZ5|MS116_PICGU ATP-dependent RNA helicase MSS116, mitochondrial 
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 
566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 
GN=MSS116 PE=3 SV=2
Length=714

 Score = 73.6 bits (179),  Expect = 4e-12, Method: Compositional matrix adjust.
 Identities = 87/364 (24%), Positives = 147/364 (40%), Gaps = 54/364 (15%)

Query  288  KALIVEPSRELA---EQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            +AL+V P+R+LA   E     + Q +    + K    ++IGG   ++ L        IV+
Sbjct  150  QALVVAPTRDLALQIEAEFKKVLQHQTRNVHRKTDTFVLIGG--RKNDLHPKAKAA-IVI  206

Query  345  GTPGRLDDLVSTGKL--NLSQVRFLVLDEADGLLSQGYSDFIN----RMHNQIPQVTSDG  398
             TPGRL+ ++   ++    S +++ V DEAD LL QG++  +     R+ +   +     
Sbjct  207  ATPGRLEAILRDPRMLPMFSDLKYRVYDEADRLLDQGFAPTLEVIEERLRDAKAEALEPD  266

Query  399  KRLQVIVCSATLHSFDVKKLSEKI---MHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL  455
               +  + SAT+         E I     +   VD   E+S  + +H  +V      D  
Sbjct  267  NHFKTALFSATVDDAVTNFAHETIGKEYEYINCVDKDAEES-HENIHQGIVRTQSIKDSF  325

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAI----KILKGEYAVRAIKEHKMDQAII  511
                  S+I     H  D           + +AI     I   EY  R ++  K ++   
Sbjct  326  EASF--SYILN---HINDK----------YFKAIVFLPTITGTEYYYRVLQRAKREE---  367

Query  512  FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLIC  571
                                   K G +   + LHG      R + ++ F++     L+C
Sbjct  368  --------------LYDSETATKKYGSR--ILRLHGKMSQSARDRTVKEFRRTSHGVLVC  411

Query  572  TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVC  631
            TDVAARG+D + V +VI +       +Y+H+IGR  RA   G A   ++  + K    + 
Sbjct  412  TDVAARGLDFNDVSHVIQMCPSSSVADYIHKIGRTARAGARGKARIFISEPEMKFIETLQ  471

Query  632  SSRG  635
              RG
Sbjct  472  RERG  475


 Score = 36.2 bits (82),  Expect = 1.2, Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 32/51 (63%), Gaps = 1/51 (2%)

Query  26   TDIQAESI-PLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGK  75
            T +Q  +I P++     V++ A+TG+GKT AF++P IQ   E  +  Q+G+
Sbjct  98   TVVQQRAIMPMMDTKTGVVVRAKTGTGKTLAFALPCIQAALENPQQTQKGR  148


>sp|A1CSR1|MRH4_ASPCL ATP-dependent RNA helicase mrh4, mitochondrial 
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 
/ DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 
GN=mrh4 PE=3 SV=2
Length=632

 Score = 73.2 bits (178),  Expect = 5e-12, Method: Compositional matrix adjust.
 Identities = 92/372 (25%), Positives = 154/372 (41%), Gaps = 60/372 (16%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL--ENGVDIVV  344
            P+A+I+ P+ EL  Q    +K     +   K R  +I   +  R   + L   +G+DI+V
Sbjct  271  PRAIILVPTSELVAQVGVKVKALSHTV---KYRSGMISSNLTPRRIKNTLFHPDGIDILV  327

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ-V  403
             TP  L  +  T    LS+V  LVLDEAD LL + ++     + +++         LQ +
Sbjct  328  ATPHLLASIAKTEPYLLSRVSHLVLDEADSLLDRSFAPTTTEIISKV------APSLQKL  381

Query  404  IVCSATLHSF----------DVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTD  453
            I+CSAT+             D+K+L+   +H           ++P  V   VV +     
Sbjct  382  ILCSATIPRSLDNLLRKRYPDIKRLTTPNLH-----------AIPRRVQLGVVDIEKDPY  430

Query  454  RLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFC  513
            R    L  + +      A D+   G  S  +  +  KIL     V   +  + D+   F 
Sbjct  431  RGNRSLACADVIWSIGKAGDSEVSGPYSSFLEPKTKKIL-----VFVNEREEADEVAQFL  485

Query  514  RTK-IDCDNL---------EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
            ++K ID  +L         E+   +    P         + L   ++ HE     E  K+
Sbjct  486  QSKGIDAHSLSRDSSARKQEEILAEFTEAPPPPSPD--EIMLAQKQRRHEDPIPFEMPKR  543

Query  564  G----------DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
                       + + L+ TD+ +RGID   V  VI   +P    +++HR+GR+GR  + G
Sbjct  544  TNSGGSTRRLPNTKVLVTTDLTSRGIDTLAVKTVILYHVPHTTIDFIHRLGRLGRMGKRG  603

Query  614  LAISLVATEKEK  625
              + LV  +  K
Sbjct  604  RGVVLVGKKDRK  615


 Score = 35.4 bits (80),  Expect = 2.0, Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 41/86 (48%), Gaps = 22/86 (26%)

Query  1    MAAFSEMGVMPEI-----AQAVEEMDWLLPTDIQAESIPLILGGG---------------  40
            + +F +  ++P +     +QA+  +  + PT IQ  +IP +L                  
Sbjct  140  ITSFDQFPLLPVVRNSIVSQALPGLMEVTPTPIQRLAIPKLLEESKPDKKPVKTDDDEPH  199

Query  41   --DVLMAAETGSGKTGAFSIPVIQIV  64
                L+AAETGSGKT A+ +PV+  V
Sbjct  200  YDQFLLAAETGSGKTLAYLLPVVDAV  225


>sp|Q2UBZ5|SPB4_ASPOR ATP-dependent rRNA helicase spb4 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=spb4 
PE=3 SV=1
Length=638

 Score = 72.8 bits (177),  Expect = 6e-12, Method: Compositional matrix adjust.
 Identities = 97/379 (26%), Positives = 157/379 (41%), Gaps = 83/379 (22%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKY------IDNP----------------KLRELLIIGG  326
            A+I+ P+RELA Q  + +     +      + NP                K+   L++GG
Sbjct  90   AIIISPTRELASQIYHVLLSLLAFHPPSASVINPSEDDDVPRQKFPSSTLKVVPQLLLGG  149

Query  327  --VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRF--LVLDEADGLLSQGYSD  382
                A D    L+   +++V TPGRL +L+S+  ++  Q  F  LVLDEAD LL  G+ +
Sbjct  150  STTPAEDLSKFLKQSPNLLVSTPGRLLELLSSPHVHCPQSSFEMLVLDEADRLLDLGFKE  209

Query  383  FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPT--WVDLKGEDSVPDT  440
             +  +  ++P+    G      + SA++ S  V ++    +  P    V +KG     D 
Sbjct  210  TLQNIIRRLPKQRRTG------LFSASI-SEAVDQIVRVGLRNPVKVMVKVKGTSGAQD-  261

Query  441  VHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRA  500
                         R    L  +++ T  +H  D                       A++ 
Sbjct  262  ------------KRTPASLQMTYLTTPTIHKFD-----------------------ALKH  286

Query  501  IKEHKMD----QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQ  556
            I  H +D    + I F  T    D L          P   G  F  + LHG    + R++
Sbjct  287  IL-HSVDPTPQKTIFFASTCSGVDYLSAIL------PLILGDDFQLISLHGKHPANVREK  339

Query  557  NLERFKKG-DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLA  615
            N  RF        L+ TDVA+RG+DI  V  V+ +  P + + ++HR GR GRA R GL+
Sbjct  340  NFNRFVNSYSPAILLTTDVASRGLDIPSVDLVVQIDPPSDPKTFIHRCGRAGRAGRRGLS  399

Query  616  ISLVATEKEKVWYHVCSSR  634
            + L+   +E+ +      R
Sbjct  400  VVLLHPGREEDYVSFLEVR  418


 Score = 47.0 bits (110),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 24/59 (41%), Positives = 37/59 (63%), Gaps = 4/59 (7%)

Query  8   GVMPEIAQ----AVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           GV P +++    AV  M +   T +QA +IPL +   DV++ A TGSGKT +F IP+++
Sbjct  16  GVSPSLSEWVLEAVSSMGFTRMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLIPIVE  74


>sp|Q1E7Y4|MAK5_COCIM ATP-dependent RNA helicase MAK5 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=MAK5 PE=3 SV=1
Length=783

 Score = 72.8 bits (177),  Expect = 6e-12, Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 83/162 (51%), Gaps = 25/162 (15%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P ALI+ P+RELA Q   ++     +  N ++R   + GG++   Q  +L +  DI++ T
Sbjct  274  PMALILSPTRELAHQLNKHLTDLVNHAPNTQVRIATVTGGLSIYKQQRLLADA-DIIIAT  332

Query  347  PGRLDDLVS--TGKLN-LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV---------  394
            PGRL ++V   TG L+ L ++RFLV+DEAD LLS+G+   +  + N I +V         
Sbjct  333  PGRLWEVVGSMTGFLSKLKKIRFLVIDEADRLLSEGHFKEVEEILNAIDKVEITEEAYGE  392

Query  395  ------------TSDGKRLQVIVCSATLHSFDVKKLSEKIMH  424
                            +  Q +V SAT H    +KLS KI +
Sbjct  393  RSEREPEPEPDEEKKAEPRQTLVFSATFHKGLQQKLSGKIRY  434


 Score = 57.4 bits (137),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 43/83 (52%), Gaps = 3/83 (4%)

Query  544  CLHGDRKPHERKQNLERFKKGDVR---FLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600
             LH       R +++ERF          L+ TDVAARG+DI G+  +++  +P     YV
Sbjct  529  ALHSSMAQKARLRSVERFSSLSSDPSSILVATDVAARGLDIKGIDLIVHYHIPRTADTYV  588

Query  601  HRIGRVGRAERMGLAISLVATEK  623
            HR GR  RA   G +I + A E+
Sbjct  589  HRSGRTARASASGKSILICAPEE  611


 Score = 49.7 bits (117),  Expect = 9e-05, Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 39/62 (63%), Gaps = 0/62 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++A+  + +  E+  ++  + +  PT IQ+  IP +L G DV+  A TGSGKT AF IP+
Sbjct  189  VSAWDSLDLSAELQTSLGRLKFSSPTPIQSACIPAVLQGHDVIGKASTGSGKTLAFGIPI  248

Query  61   IQ  62
            ++
Sbjct  249  VE  250


>sp|A4R8G3|DBP8_PYRO7 ATP-dependent RNA helicase DBP8 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=DBP8 PE=3 SV=3
Length=579

 Score = 72.4 bits (176),  Expect = 6e-12, Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 46/78 (59%), Gaps = 0/78 (0%)

Query  542  CVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH  601
               LH   +  +R  NL RF+    R L+ TDVA+RG+DI  V  V+N  LP +  +Y+H
Sbjct  430  VTSLHSKLRQQQRIDNLGRFRASAARILVATDVASRGLDIPEVSVVVNYDLPRDPDDYIH  489

Query  602  RIGRVGRAERMGLAISLV  619
            R+GR  RA R G A++ V
Sbjct  490  RVGRTARAGRKGEAVNFV  507


 Score = 60.5 bits (145),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 43/98 (44%), Positives = 56/98 (57%), Gaps = 7/98 (7%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P+A  A+++  +RELA   L   +QFK       L+  LIIGG   R Q   L     IV
Sbjct  214  PSAIFAVVLTATRELA---LQIYEQFKAVSSPHVLKAALIIGGSDMRSQAIALAQRPSIV  270

Query  344  VGTPGRL-DDLVSTGK---LNLSQVRFLVLDEADGLLS  377
            + TPGRL D + S+G+     L +V+FLVLDEAD LLS
Sbjct  271  IATPGRLADHIRSSGEDTICGLRRVKFLVLDEADRLLS  308


 Score = 46.6 bits (109),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 24/59 (41%), Positives = 35/59 (59%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  +GV P + Q++  +    PT IQ   I  IL G D +  + TGSGKT AF++P++Q
Sbjct  150  FESLGVEPWLVQSLANLAVKRPTGIQKGCIGEILKGRDCIGGSRTGSGKTIAFAVPILQ  208


>sp|Q2UQW3|ROK1_ASPOR ATP-dependent RNA helicase rok1 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=rok1 
PE=3 SV=1
Length=725

 Score = 72.4 bits (176),  Expect = 9e-12, Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 1/96 (1%)

Query  533  PDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTL  592
            P + G       LH D    +R + ++ F+KG++  L+ TD+ ARGID  G+  V+N  +
Sbjct  517  PPEAGGSSRIAVLHSDLSDGQRSEIMKNFRKGEIWILVTTDLLARGIDFRGINGVVNYDI  576

Query  593  PDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            P+    YVHR+GR GRA R G  +++    KE + Y
Sbjct  577  PNSAAVYVHRVGRTGRAGREG-GVAVTYYTKEDIPY  611


 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 13/74 (18%)

Query  13   IAQAVEEMDWLLPTDIQAESIPLILGG-------------GDVLMAAETGSGKTGAFSIP  59
            +A+ + E  + +PT++Q  ++PL+LG               D+L+ A TGSGKT +F IP
Sbjct  190  LAENITEQGFTVPTEVQLGTLPLLLGDRTIGQSKTEEPVEPDLLVVAPTGSGKTLSFLIP  249

Query  60   VIQIVYETLKDQQE  73
            VI  +      QQE
Sbjct  250  VINKIVRHHHGQQE  263


>sp|Q6CEB8|DRS1_YARLI ATP-dependent RNA helicase DRS1 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DRS1 PE=3 
SV=1
Length=753

 Score = 72.4 bits (176),  Expect = 9e-12, Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 65/127 (51%), Gaps = 15/127 (12%)

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            LHG     +R Q++  FKK +V  L+CTD+A+RG+DI  +  V+N  +P     Y+HR+G
Sbjct  528  LHGALSQEQRLQSITAFKKLEVPILVCTDLASRGLDIPKIECVVNYDMPQTHAVYLHRVG  587

Query  605  RVGRAERMGLAISLV-------ATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQ  657
            R  RA R G +I+LV       A  +E +     S +GK          G    W    +
Sbjct  588  RTARAGREGRSITLVGEAAADRAIVREAIKSVSESKQGKAV--------GRNVDWPEVEK  639

Query  658  LLSEIEE  664
            L S+IEE
Sbjct  640  LYSKIEE  646


 Score = 62.0 bits (149),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 38/127 (30%), Positives = 71/127 (56%), Gaps = 9/127 (7%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            A K +++ P+REL+ Q  +  K+  +Y+    +R  L +GG+  R Q   L+   ++V+ 
Sbjct  323  ATKVVVLTPTRELSIQVADVGKKLAQYVSG--VRFGLAVGGLNLRVQEQELKTRPEVVIA  380

Query  346  TPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            TPGR +D + ++   N+  V  LV+DEAD +L +G+   +  +   +P      K+ Q +
Sbjct  381  TPGRFIDHVRNSPSFNVDDVEILVIDEADRMLEEGFQQELTEILTLLP------KKRQTL  434

Query  405  VCSATLH  411
            + SAT++
Sbjct  435  LFSATMN  441


 Score = 48.9 bits (115),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 42/67 (63%), Gaps = 1/67 (1%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ-  62
            F  + +   + + +  + +  PT IQ+ +IP+ L G D++  A TGSGKT A+ IPV++ 
Sbjct  254  FQTLNLSRPVMKGISALGYQAPTPIQSRTIPIALMGKDLVAGAVTGSGKTAAYIIPVLER  313

Query  63   IVYETLK  69
            ++Y++ K
Sbjct  314  LLYKSSK  320


>sp|Q75F95|DRS1_EREGS ATP-dependent RNA helicase DRS1 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DRS1 PE=3 SV=1
Length=734

 Score = 72.0 bits (175),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 0/75 (0%)

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            LHG     +R Q++  FK  DV  L+CTD+A+RG+DI  +  VIN  +P   + Y+HR+G
Sbjct  497  LHGSLTQEQRLQSVNNFKSLDVPVLVCTDLASRGLDIPKIEVVINYDMPKTYEIYLHRVG  556

Query  605  RVGRAERMGLAISLV  619
            R  RA R G +++LV
Sbjct  557  RTARAGREGKSVTLV  571


 Score = 68.2 bits (165),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 42/128 (33%), Positives = 72/128 (56%), Gaps = 9/128 (7%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            + + L++ P+RELA Q  +  K+  K++    L   L +GG+  R Q   L+   DIV+ 
Sbjct  290  STRVLVLTPTRELAIQVADVGKKLGKFVSG--LTFGLAVGGLNLRQQEQALKLRPDIVIA  347

Query  346  TPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            TPGR+ D + ++   ++  V  LV+DEAD +L  G+ D +N + + IP       + Q +
Sbjct  348  TPGRIIDHIRNSASFSVDSVEVLVIDEADRMLEDGFQDELNEIMSLIPS------KRQTL  401

Query  405  VCSATLHS  412
            + SAT++S
Sbjct  402  LFSATMNS  409


 Score = 49.3 bits (116),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 24/69 (35%), Positives = 42/69 (61%), Gaps = 1/69 (1%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F+ + +   + + +  + +  P+ IQ  +IP+ L G DV+  A TGSGKT AF IP+I
Sbjct  219  STFNSLSLSRPVLKGLAALGYTKPSPIQGATIPIALLGKDVIAGAVTGSGKTAAFMIPII  278

Query  62   Q-IVYETLK  69
            + ++Y+  K
Sbjct  279  ERLLYKPAK  287


>sp|A1CNK1|ROK1_ASPCL ATP-dependent RNA helicase rok1 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=rok1 PE=3 SV=1
Length=738

 Score = 72.0 bits (175),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 1/96 (1%)

Query  533  PDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTL  592
            P + G       LH D    +R + ++ F+KG++  L+ TD+ ARG+D  G+  V+N  +
Sbjct  530  PTEAGGSSRIAVLHSDLSDGQRSEIMKNFRKGEIWILVTTDLLARGVDFRGINGVVNYDI  589

Query  593  PDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            P+    YVHR+GR GRA R G  I++    KE + Y
Sbjct  590  PNSAAVYVHRVGRTGRAGREG-GIAVTYYTKEDIPY  624


 Score = 35.0 bits (79),  Expect = 3.0, Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 11/84 (13%)

Query  5    SEMGVMPEIAQAVEEMDWLLPTDIQA----------ESIPLILGGGDVLMAAETGSGKTG  54
            S+  +   +A+ + E  + +PT++Q           ES        D+L+ A TGSGKT 
Sbjct  193  SKYKISSRLAENIAEQGFTVPTEVQLGTLPLLLGGFESKAGESVEPDLLVVAPTGSGKTL  252

Query  55   AFSIPVIQIVYETLKDQ-QEGKKG  77
            +F IPVI  +     DQ QE ++G
Sbjct  253  SFLIPVINKIVRHHHDQSQEQERG  276


>sp|P0CQ91|MAK5_CRYNB ATP-dependent RNA helicase MAK5 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=MAK5 PE=3 SV=1
Length=772

 Score = 72.0 bits (175),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 0/89 (0%)

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            LH   +  +R +NL+RFK      LI TDVAARG+DI  V +V++  LP     Y+HR G
Sbjct  514  LHSHLQQKQRLKNLDRFKSNPKGILIATDVAARGLDIPQVDHVVHFNLPRTADAYIHRSG  573

Query  605  RVGRAERMGLAISLVATEKEKVWYHVCSS  633
            R  RA+  G A+ LV+ +++ V   +  S
Sbjct  574  RTARAQNEGFALQLVSPDEKSVQRALMKS  602


 Score = 63.9 bits (154),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 61/105 (58%), Gaps = 13/105 (12%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYI----------DNPKLRELLIIGGVAARDQLSVLEN  338
            AL++ P+RELA Q ++++    K+             P++    ++GG++A+ Q  +LE 
Sbjct  250  ALVLCPTRELALQVMDHLNALLKHALATPDGEKPQGPPRVSVGSVVGGLSAQKQKRILER  309

Query  339  GVDIVVGTPGRLDDLVSTG---KLNLSQVRFLVLDEADGLLSQGY  380
            G D++V TPGRL DL+        ++  +RFLV+DEAD ++  G+
Sbjct  310  GCDVIVATPGRLWDLIKADDELATSVRTLRFLVIDEADRMIENGH  354


 Score = 47.4 bits (111),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 0/61 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  +S + + P + ++     +  PT IQ+ +IP  + G DV+  AETGSGKT A+S+P+
Sbjct  171  LPEWSSISLHPSLKRSFLASSFTAPTAIQSRAIPAGITGRDVVGVAETGSGKTLAYSLPI  230

Query  61   I  61
            +
Sbjct  231  L  231


>sp|P0CQ90|MAK5_CRYNJ ATP-dependent RNA helicase MAK5 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=MAK5 PE=3 SV=1
Length=772

 Score = 72.0 bits (175),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 0/89 (0%)

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            LH   +  +R +NL+RFK      LI TDVAARG+DI  V +V++  LP     Y+HR G
Sbjct  514  LHSHLQQKQRLKNLDRFKSNPKGILIATDVAARGLDIPQVDHVVHFNLPRTADAYIHRSG  573

Query  605  RVGRAERMGLAISLVATEKEKVWYHVCSS  633
            R  RA+  G A+ LV+ +++ V   +  S
Sbjct  574  RTARAQNEGFALQLVSPDEKSVQRALMKS  602


 Score = 63.5 bits (153),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 61/105 (58%), Gaps = 13/105 (12%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYI----------DNPKLRELLIIGGVAARDQLSVLEN  338
            AL++ P+RELA Q ++++    K+             P++    ++GG++A+ Q  +LE 
Sbjct  250  ALVLCPTRELALQVMDHLNALLKHALATPDGEKPQGPPRVSVGSVVGGLSAQKQKRILER  309

Query  339  GVDIVVGTPGRLDDLVSTG---KLNLSQVRFLVLDEADGLLSQGY  380
            G D++V TPGRL DL+        ++  +RFLV+DEAD ++  G+
Sbjct  310  GCDVIVATPGRLWDLIKADDELATSVRTLRFLVIDEADRMIENGH  354


 Score = 47.4 bits (111),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 0/61 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  +S + + P + ++     +  PT IQ+ +IP  + G DV+  AETGSGKT A+S+P+
Sbjct  171  LPEWSSISLHPSLKRSFLASSFTAPTAIQSRAIPAGITGRDVVGVAETGSGKTLAYSLPI  230

Query  61   I  61
            +
Sbjct  231  L  231


>sp|O80792|RH33_ARATH Putative DEAD-box ATP-dependent RNA helicase 
33 OS=Arabidopsis thaliana OX=3702 GN=RH33 PE=3 SV=1
Length=845

 Score = 72.0 bits (175),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 84/339 (25%), Positives = 148/339 (44%), Gaps = 63/339 (19%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR-DQLSVLENGVDIVVGTPG  348
            LI+ P+RELA Q     K   K  D   ++ L  IGG   R DQ  +      I++ TPG
Sbjct  456  LILCPTRELASQIAAEGKALLKNHDGIGVQTL--IGGTRFRLDQQRLESEPCQILIATPG  513

Query  349  RLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            RL D +         L  ++  ++DEAD LL  G+   + ++ + +P      ++ Q ++
Sbjct  514  RLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEKIIDCLP------RQRQSLL  567

Query  406  CSATLHSFDVKKLSEKIMHFP-TWVDLKGEDSVP--DTV-HHVVVPVNPKTDRLWERLGK  461
             SAT+   +V+++S+ ++    +++D  G   V   D V    +V  +     L   L K
Sbjct  568  FSATIPK-EVRRVSQLVLKRDHSYIDTIGLGCVETHDKVKQSCIVAPHESHFHLVPHLLK  626

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
             HI         N  P                 +Y +           I+FC T +   +
Sbjct  627  EHI---------NNMP-----------------DYKI-----------IVFCSTGM-VTS  648

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            L    +++         + +   +H  +    R    + FK+ +   L+ +DV+ARG++ 
Sbjct  649  LMYTLLRE--------MKLNVREIHARKPQLHRTCVSDEFKESNRLILVTSDVSARGMNY  700

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
              V  VI V +P +++ Y+HR+GR GR  + G  + L+A
Sbjct  701  PDVTLVIQVGIPSDREQYIHRLGRTGREGKGGKGLLLIA  739


 Score = 38.9 bits (89),  Expect = 0.18, Method: Compositional matrix adjust.
 Identities = 20/65 (31%), Positives = 35/65 (54%), Gaps = 0/65 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F E  + P   +A+     +  T +Q  ++   L G D L+ A+TG+GK+ AF +P I+ 
Sbjct  377  FDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET  436

Query  64   VYETL  68
            V + +
Sbjct  437  VLKAM  441


>sp|A1D1E3|ROK1_NEOFI ATP-dependent RNA helicase rok1 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=rok1 
PE=3 SV=1
Length=738

 Score = 72.0 bits (175),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 1/96 (1%)

Query  533  PDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTL  592
            P + G       LH D    +R + ++ F+KG++  L+ TD+ ARG+D  G+  V+N  +
Sbjct  531  PAEAGGSSRIAVLHSDLSDGQRSEIMKNFRKGEIWILVTTDLLARGVDFRGINGVVNYDI  590

Query  593  PDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            P+    YVHR+GR GRA R G  I++    KE + Y
Sbjct  591  PNSAAVYVHRVGRTGRAGREG-GIAVTYYTKEDIPY  625


 Score = 43.5 bits (101),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 27/91 (30%), Positives = 47/91 (52%), Gaps = 18/91 (20%)

Query  1    MAAFSEM----GVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--------------GDV  42
            + +F E+     +   +A+ + E  + +PT++Q  ++PL+L G               D+
Sbjct  186  LVSFKELRTRYKISRRLAENIAEQGFSVPTEVQLGTLPLLLEGFKVSGNSKDAESIEPDL  245

Query  43   LMAAETGSGKTGAFSIPVIQIVYETLKDQQE  73
            L+ A TGSGKT +F IPVI  +     +Q+E
Sbjct  246  LVVAPTGSGKTLSFLIPVINKIVRHHHEQEE  276


>sp|Q4WRH5|ROK1_ASPFU ATP-dependent RNA helicase rok1 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=rok1 PE=3 SV=1
Length=739

 Score = 71.6 bits (174),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 1/96 (1%)

Query  533  PDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTL  592
            P + G       LH D    +R + ++ F+KG++  L+ TD+ ARG+D  G+  V+N  +
Sbjct  532  PAEAGGSSRIAVLHSDLSDGQRSEIMKNFRKGEIWILVTTDLLARGVDFRGINGVVNYDI  591

Query  593  PDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            P+    YVHR+GR GRA R G  I++    KE + Y
Sbjct  592  PNSAAVYVHRVGRTGRAGREG-GIAVTYYTKEDIPY  626


>sp|Q54TD7|DDX24_DICDI ATP-dependent RNA helicase ddx24 OS=Dictyostelium 
discoideum OX=44689 GN=ddx24 PE=3 SV=1
Length=940

 Score = 71.6 bits (174),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 56/92 (61%), Gaps = 0/92 (0%)

Query  542  CVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH  601
               LH   +  +R +NL+RF+  D   LI TDVAARG+DI  V +VI+  +P   Q Y+H
Sbjct  690  VFALHAQMQQKQRLKNLDRFRTLDNVVLIATDVAARGLDIPLVQHVIHYQVPRTTQLYIH  749

Query  602  RIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
            R GR  R+++ G+++ LV  ++  ++  + SS
Sbjct  750  RSGRTARSDQDGISVVLVTPKERPLYIKLDSS  781


 Score = 64.3 bits (155),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 37/95 (39%), Positives = 61/95 (64%), Gaps = 6/95 (6%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            +L++ P+RELA Q  N+IK     I +  L+ + I+GG+A++ Q  VL    +IVV TPG
Sbjct  407  SLVICPTRELAIQVTNHIKSI---ISHTNLKVISIVGGMASQRQQRVLSKRPEIVVATPG  463

Query  349  RLDDLVSTGKLNLSQVRFLV---LDEADGLLSQGY  380
            RL +L++ G  +L ++  L+   +DEAD ++ QG+
Sbjct  464  RLWELITEGHQHLVELESLLCLGIDEADRMVEQGH  498


 Score = 53.1 bits (126),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 45/70 (64%), Gaps = 1/70 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGG-DVLMAAETGSGKTGAFSIP  59
            M+ ++   + P I + +  + +  PT+IQ+  IP+ +  G DV+ AA+TGSGKT AF IP
Sbjct  293  MSEWNSYNLDPLILKGLRSLGFSKPTEIQSSVIPVAVSSGYDVIGAAQTGSGKTLAFGIP  352

Query  60   VIQIVYETLK  69
            ++Q + + L+
Sbjct  353  MVQRILQHLR  362


>sp|A2QAB5|ROK1_ASPNC ATP-dependent RNA helicase rok1 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=rok1 PE=3 SV=2
Length=729

 Score = 71.2 bits (173),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 1/96 (1%)

Query  533  PDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTL  592
            P + G       LH +    +R + +++F+KG++  L+ TD+ ARG+D  G+  V+N  +
Sbjct  524  PPEAGGSSRIAVLHSELSDGQRSEIMKQFRKGEIWILVTTDLLARGVDFRGINGVVNYDI  583

Query  593  PDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            P+    YVHR+GR GRA R G  I++    KE + Y
Sbjct  584  PNSAAVYVHRVGRTGRAGREG-GIAVTYYTKEDIPY  618


 Score = 43.5 bits (101),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 14/66 (21%)

Query  13   IAQAVEEMDWLLPTDIQAESIPLILGGG--------------DVLMAAETGSGKTGAFSI  58
            +A+ + E  + +PT++Q  S+PL+LG                D+L+ A TGSGKT +F I
Sbjct  194  LAENIAEQGFTVPTEVQLGSLPLLLGDQSVPQKSGTEKSTEPDLLVVAPTGSGKTLSFMI  253

Query  59   PVIQIV  64
            PVI  +
Sbjct  254  PVINKI  259


>sp|P53166|MRH4_YEAST ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 
OX=559292 GN=MRH4 PE=1 SV=1
Length=561

 Score = 70.9 bits (172),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 152/365 (42%), Gaps = 46/365 (13%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +++I+ P+ EL +Q    + + K  +    L         + RD L  ++N +DI+V TP
Sbjct  203  RSIILVPTHELVDQVYETVSKTKTLLG---LNSFKWDKATSYRDLLENIKNRIDILVTTP  259

Query  348  GRLDDLVSTGKLN-----LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            G+L +L S   +      LS+V F+VLDEAD LL + + +  +    +IP +        
Sbjct  260  GKLLNLFSIRMITRPDKVLSKVGFVVLDEADTLLDRSWLEETHSAIKRIPNIN------H  313

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED--SVPDTVHHVVVPVNPKTDRLWERLG  460
            +I CSAT+   +  K  +++  FPT V +       +P  +   V  +N           
Sbjct  314  LIFCSATIPQ-EFNKTMQRL--FPTVVPIMTPRLHKLPFALDFKV--INSALSPFKGSKI  368

Query  461  KSHIRTDDVHAKDNTRPG--------ANSPEMWSEAIKILKGEYAVRAIK-------EHK  505
            K+  +T    + D+T PG         N  +   E + +L  ++   AI        E +
Sbjct  369  KALAQTLYAISNDDTEPGFEKRCIIFVNEKKNVPEIVNLLNKKFGHNAIGLTGEDTFEER  428

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCV---CLHGDRKPHERKQNLERFK  562
             ++ + F         +    + Q   P     +F       + G  K      N     
Sbjct  429  SEKIMPFLSPPRPLSEV----VAQSTSPPTSLKKFEIPDSNIVIGKLK--NTNSNGTAPS  482

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
               +  L+ TD+ ARG++  GV  V+   +P    + +HR+GR  R ++ G  + ++   
Sbjct  483  NKSLHVLVTTDLMARGLNFKGVRNVVLYDVPKTSIDLIHRVGRTARMKQGG-RVFMLTDS  541

Query  623  KEKVW  627
            K K W
Sbjct  542  KTKSW  546


>sp|A6ZUB2|MRH4_YEAS7 ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 
GN=MRH4 PE=3 SV=1
Length=561

 Score = 70.9 bits (172),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 152/365 (42%), Gaps = 46/365 (13%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +++I+ P+ EL +Q    + + K  +    L         + RD L  ++N +DI+V TP
Sbjct  203  RSIILVPTHELVDQVYETVSKTKTLLG---LNSFKWDKATSYRDLLENIKNRIDILVTTP  259

Query  348  GRLDDLVSTGKLN-----LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            G+L +L S   +      LS+V F+VLDEAD LL + + +  +    +IP +        
Sbjct  260  GKLLNLFSIRMITRPDKVLSKVGFVVLDEADTLLDRSWLEETHSAIKRIPNIN------H  313

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED--SVPDTVHHVVVPVNPKTDRLWERLG  460
            +I CSAT+   +  K  +++  FPT V +       +P  +   V  +N           
Sbjct  314  LIFCSATIPQ-EFNKTMQRL--FPTVVPIMTPRLHKLPFALDFKV--INSALSPFKGSKI  368

Query  461  KSHIRTDDVHAKDNTRPG--------ANSPEMWSEAIKILKGEYAVRAIK-------EHK  505
            K+  +T    + D+T PG         N  +   E + +L  ++   AI        E +
Sbjct  369  KALAQTLYAISNDDTEPGFEKRCIIFVNEKKNVPEIVNLLNKKFGHNAIGLTGEDTFEER  428

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCV---CLHGDRKPHERKQNLERFK  562
             ++ + F         +    + Q   P     +F       + G  K      N     
Sbjct  429  SEKIMPFLSPPRPLSEV----VAQSTSPPTSLKKFEIPDSNIVIGKLK--NTNSNGTAPS  482

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
               +  L+ TD+ ARG++  GV  V+   +P    + +HR+GR  R ++ G  + ++   
Sbjct  483  NKSLHVLVTTDLMARGLNFKGVRNVVLYDVPKTSIDLIHRVGRTARMKQGG-RVFMLTDS  541

Query  623  KEKVW  627
            K K W
Sbjct  542  KTKSW  546


>sp|Q0CQF3|SPB4_ASPTN ATP-dependent rRNA helicase spb4 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=spb4 
PE=3 SV=1
Length=639

 Score = 71.2 bits (173),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 153/375 (41%), Gaps = 75/375 (20%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKY-------IDNP---------------KLRELLIIGG  326
            A+I+ P+RELA Q    +     +       I  P               K+   L++GG
Sbjct  90   AIIISPTRELASQIHQVLLSLLAFHPPSAAAIKPPGEDDAPREKFSASTLKVVPQLLLGG  149

Query  327  --VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRF--LVLDEADGLLSQGYSD  382
                A D    L++  ++++ TPGRL +L+S+  ++  Q  F  LVLDEAD LL  G+ +
Sbjct  150  STTPAEDLSYFLKHSPNVLISTPGRLLELLSSPHVHCPQSSFEMLVLDEADRLLDLGFKE  209

Query  383  FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPT--WVDLKGEDSVPDT  440
             +  +  ++P+    G      + SA++ S  V ++    +  P    V +KG   V D 
Sbjct  210  TLQNILRRLPKQRRTG------LFSASI-SEAVDQIVRVGLRNPVKVLVKVKGTSGVQD-  261

Query  441  VHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRA  500
                         R    L  +++ T   H     RP   S +   +             
Sbjct  262  ------------KRTPASLQMTYLTTPPAHKFLTLRPILTSLQPTPQ-------------  296

Query  501  IKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLER  560
                   + I F  T    D L          P   G  F  + LHG    + R++N  R
Sbjct  297  -------KTIFFVSTCSGVDYLAAIL------PLLLGDDFQLIPLHGKHPANVRQKNFNR  343

Query  561  FKKGDV-RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            F        L+ TDVA+RG+DI  V  V+ +  P + + ++HR GR GRA R G+++ L+
Sbjct  344  FINAHTPSILLTTDVASRGLDIPSVDLVVQIDPPSDPKTFIHRCGRAGRAGRRGVSVVLL  403

Query  620  ATEKEKVWYHVCSSR  634
               +E+ +      R
Sbjct  404  HPGREEDYVSFLEVR  418


 Score = 42.4 bits (98),  Expect = 0.016, Method: Compositional matrix adjust.
 Identities = 18/37 (49%), Positives = 27/37 (73%), Gaps = 0/37 (0%)

Query  26  TDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           T +QA +IPL +   DV++ A TGSGKT +F +PV++
Sbjct  38  TPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLVPVVE  74


>sp|P0C2N7|DRS1_CHAGB ATP-dependent RNA helicase DRS1 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=DRS1 PE=3 SV=1
Length=795

 Score = 71.2 bits (173),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 70/126 (56%), Gaps = 8/126 (6%)

Query  561  FKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            F+ G V +L+ TD+A+RG+DI G+  VIN   P   + YVHR+GR  RA R G+AI+L A
Sbjct  561  FRDGKVNYLLATDLASRGLDIKGIDTVINYEAPQSLEIYVHRVGRTARAGRSGVAITLAA  620

Query  621  TEKEKVW-YHVCSSRGKGC-YNTRLKEDGGCTIWYNEM-QLLSEIEEHLN-----CTISQ  672
                KV    V + + +G    +R+ +      W +++ ++  EI+E L        ++Q
Sbjct  621  EPDRKVVKAAVRAGKAQGAKIISRVIDAADADKWQDQIDEMDDEIDEILQEEKEEKQLAQ  680

Query  673  VEPDIK  678
            +E  +K
Sbjct  681  IEMQVK  686


 Score = 62.0 bits (149),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 82/164 (50%), Gaps = 11/164 (7%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + +++ P+RELA Q  +   +   + D   ++  L +GG++ + Q   L    D+V+ TP
Sbjct  349  RVVVLTPTRELAIQCHSVATKLASHTD---IKFCLAVGGLSLKVQEGELRLRPDVVIATP  405

Query  348  GR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            GR +D + ++    +  V  LVLDEAD +L  G++D +N +   +P      K  Q ++ 
Sbjct  406  GRFIDHMRNSASFAVETVEILVLDEADRMLEDGFADELNEILTTLP------KSRQTMLF  459

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNP  450
            SAT+ S  V KL    ++ P  + +  +     T+    V + P
Sbjct  460  SATMTST-VDKLIRVGLNKPARIMVDSQKQTAVTLAQEFVRLRP  502


 Score = 51.2 bits (121),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 24/62 (39%), Positives = 40/62 (65%), Gaps = 0/62 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +++F  M +   I + +  + +  PT IQA++IP+ L G DV+  A TGSGKT AF +P+
Sbjct  275  LSSFQGMSLSRPILRGLTSVGFTKPTPIQAKTIPIALMGKDVVGGAVTGSGKTAAFVVPI  334

Query  61   IQ  62
            ++
Sbjct  335  LE  336


>sp|P52271|Y308_MYCGE Probable ATP-dependent RNA helicase MG308 
OS=Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / 
NCTC 10195 / G37) OX=243273 GN=MG308 PE=3 SV=1
Length=410

 Score = 70.1 bits (170),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 129/328 (39%), Gaps = 78/328 (24%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P+A+I  P++EL  Q +N + + KKY      +        +++ QL V           
Sbjct  64   PQAVIFVPTKELQWQIINILTEIKKY-----FKTFTFATSFSSKAQLIV-----------  107

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQG-YSDFINRMHNQIPQVTSDGKRLQVIV  405
                  L++   L  S+VR++V DE D  L Q     ++  +H     +    K L    
Sbjct  108  -----SLLNEKYLFTSKVRYVVFDEIDMFLEQSSIQQWLECVH-----LFQKAKPL-FAF  156

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SATL +  ++ + +++++    ++L  +  +   V H VV                H+ 
Sbjct  157  FSATLFNQQLQIIKKQVINTKV-INLHPKQWIHPLVKHFVV----------------HLN  199

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
            T++  +                      G  A+  +K H+  Q I+FC  +     L Q 
Sbjct  200  TENRFS----------------------GLLAL--LKHHQNQQIIVFCSNQKSLKQLTQL  235

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
                        +  S   ++G     ERK N  +     ++ L+ +D+ +RGID++   
Sbjct  236  L---------SNNNISFGSIYGSLTYQERKNNFTKATNNKLKLLVVSDLFSRGIDLNYFS  286

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMG  613
             VI+  LP     Y+HR GRV R    G
Sbjct  287  VVISWDLPKIDSFYIHRSGRVARLNSWG  314


>sp|Q2UMY7|MAK5_ASPOR ATP-dependent RNA helicase mak5 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=mak5 
PE=3 SV=1
Length=757

 Score = 70.5 bits (171),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 42/117 (36%), Positives = 71/117 (61%), Gaps = 9/117 (8%)

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
            ++S+   +++ T+T      P AL++ P+RELA Q   +I +   +      R  L+ GG
Sbjct  250  LRSKTQKDSEKTET-----TPIALVLSPTRELAHQLAKHIGEVVSHAPGVNARIALLTGG  304

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGY  380
            ++ + Q  VL N  DIV+GTPGR+ +++S+G      +  ++FLV+DEAD LLS+G+
Sbjct  305  LSLQKQQRVLTNA-DIVIGTPGRVWEVLSSGHGLIRKMQAIKFLVIDEADRLLSEGH  360


 Score = 64.7 bits (156),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 2/82 (2%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++A+  +G+ PEI   + +M +  PT +Q   IP IL G DV+  A TGSGKT AF IP+
Sbjct  183  VSAWESLGLSPEILAGISKMKFTTPTSVQKACIPPILDGRDVIGKASTGSGKTLAFGIPI  242

Query  61   IQIVYETL--KDQQEGKKGKTT  80
            ++   E L  K Q++ +K +TT
Sbjct  243  LEYYLEKLRSKTQKDSEKTETT  264


 Score = 55.1 bits (131),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 28/78 (36%), Positives = 40/78 (51%), Gaps = 3/78 (4%)

Query  542  CVCLHGDRKPHERKQNLERFKKGDVR---FLICTDVAARGIDIHGVPYVINVTLPDEKQN  598
             + LH       R +++ERF          L+ TDVAARG+DI G+ +V++   P     
Sbjct  513  ALALHSSMAQKARLRSVERFSSPSSDPSSILVATDVAARGLDIKGIDFVVHYHAPRTADA  572

Query  599  YVHRIGRVGRAERMGLAI  616
            YVHR GR  RA   G ++
Sbjct  573  YVHRSGRTARAGASGKSV  590


>sp|Q5BET6|ROK1_EMENI ATP-dependent RNA helicase rok1 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=rok1 PE=3 SV=1
Length=742

 Score = 70.5 bits (171),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 1/96 (1%)

Query  533  PDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTL  592
            P + G       LH D    +R   ++ F+KG++  L+ TD+ ARG+D  G+  V+N  +
Sbjct  529  PPEAGGSARIAVLHSDLSDTQRSDIMKGFRKGEIWILVTTDLLARGVDFRGINGVVNYDI  588

Query  593  PDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            P+    YVHR+GR GRA R G  +++    KE + Y
Sbjct  589  PNSPAVYVHRVGRTGRAGREG-GVAVTYYTKEDIPY  623


 Score = 44.7 bits (104),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 27/72 (38%), Positives = 41/72 (57%), Gaps = 15/72 (21%)

Query  5    SEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILG-----GG----------DVLMAAETG  49
            S+  +   +A+ + E  + +PT++Q  S+PL+LG     GG          D+L+ A TG
Sbjct  192  SKYKISRRLAENIAEQGFTVPTEVQLGSLPLLLGNSAVPGGSSDSTSATEPDLLVVAPTG  251

Query  50   SGKTGAFSIPVI  61
            SGKT +F IPVI
Sbjct  252  SGKTLSFMIPVI  263


>sp|Q7S6F3|DBP9_NEUCR ATP-dependent RNA helicase dbp-9 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=dbp-9 PE=3 SV=1
Length=676

 Score = 70.5 bits (171),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 80/151 (53%), Gaps = 6/151 (4%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            ALI+ P+RELA+Q    I  F  +     ++   +   V+     S+L N  D++V TP 
Sbjct  171  ALILVPTRELADQVHKAIDAFSAFC-TKDIQSAKLTDNVSDAVLRSLLANAPDVIVSTPA  229

Query  349  RLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSA  408
            R    + +G L+++++++LVLDEAD +LS GY + +  +   +P+       +Q  + SA
Sbjct  230  RAWHNIESGALSVAKLQYLVLDEADLVLSYGYDEDMENIARSLPK-----GGVQTTMMSA  284

Query  409  TLHSFDVKKLSEKIMHFPTWVDLKGEDSVPD  439
            TL S ++  L       PT +DLK E S  D
Sbjct  285  TLVSDELDTLKGFFCRNPTMLDLKEEFSNED  315


 Score = 62.0 bits (149),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 41/58 (71%), Gaps = 0/58 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            FS++G+ P + QAV +  +  PT +Q ++IPL L G DVL  A+TGSGKT A+ +PV+
Sbjct  97   FSDLGLDPRLVQAVAKQSFEKPTLVQRKAIPLALAGQDVLCKAKTGSGKTAAYVLPVL  154


 Score = 52.8 bits (125),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 29/44 (66%), Gaps = 0/44 (0%)

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +RGID   V  VIN  +P    +Y+HRIGR  RA R G+A+S+V
Sbjct  449  SRGIDFKNVAAVINFDMPTSSSSYIHRIGRTARAGRAGIALSMV  492


>sp|A2QE29|SPB4_ASPNC ATP-dependent rRNA helicase spb4 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=spb4 PE=3 SV=2
Length=642

 Score = 70.1 bits (170),  Expect = 4e-11, Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 7/128 (5%)

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV-  566
            + I+F  T    D L          P   G  F  + LHG  + + R++N  RF      
Sbjct  298  KTIMFVSTCSGVDYLSAIL------PSIIGDDFQLIPLHGKHQANVREKNFNRFVNSHTP  351

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
              L+ TDVA+RG+DI  V  VI +  P + + ++HR GR GRA R GL++ L+   +E+ 
Sbjct  352  AILLTTDVASRGLDIPSVDVVIQIDPPSDPKTFIHRCGRAGRAGRKGLSVVLLHPGREED  411

Query  627  WYHVCSSR  634
            +      R
Sbjct  412  YVSFLEVR  419


 Score = 53.5 bits (127),  Expect = 6e-06, Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 27/137 (20%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKY--------------IDNP---------KLRELLIIG  325
            A+I+ P+RELA Q  N +     +               D P         K+   L++G
Sbjct  90   AIIISPTRELASQIYNVLTSLLAFHPPSASTLKPSDDDDDAPRQKFPSSTLKVVPQLLLG  149

Query  326  G--VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRF--LVLDEADGLLSQGYS  381
            G    A D  + L+   +++V TPGRL +L+S+  ++  Q  F  LV+DEAD LL  G+ 
Sbjct  150  GSTTPAEDLSTFLKRSPNLLVSTPGRLLELLSSPHVHCPQSSFEMLVMDEADRLLDLGFK  209

Query  382  DFINRMHNQIPQVTSDG  398
            D +  +  ++P+    G
Sbjct  210  DTLQNILRRLPKQRRTG  226


 Score = 47.0 bits (110),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (63%), Gaps = 4/59 (7%)

Query  8   GVMPEIAQ----AVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           GV P +++    AV  M +   T +QA +IPL +   DV++ A TGSGKT +F IPV++
Sbjct  16  GVTPALSEWVLDAVASMGFTRMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLIPVVE  74


>sp|Q5ANB2|DBP10_CANAL ATP-dependent RNA helicase DBP10 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP10 
PE=3 SV=1
Length=908

 Score = 70.5 bits (171),  Expect = 4e-11, Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 80/159 (50%), Gaps = 10/159 (6%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P   +A+I+ PSRELA QT   +K+F    +   L+ +++IGG +  +  S +    DI+
Sbjct  166  PGGVRAVILSPSRELALQTYKQVKEFSHGTN---LQSIVLIGGDSLEEDFSKMMTKPDII  222

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            V TPGR   L    + +L  V+++V DEAD L   G+++ +N +   +P         Q 
Sbjct  223  VCTPGRFLHLKVEMQYDLMTVQYIVFDEADRLFEMGFAEQLNELLASLPS------NRQS  276

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH  442
            ++ SATL    V   ++  +  P  V L  E  + D + 
Sbjct  277  LLFSATLPRSLV-DFAKAGLTNPVLVRLDAESKISDQLQ  314


 Score = 68.6 bits (166),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 48/80 (60%), Gaps = 1/80 (1%)

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            ++G    H RK  L +F+ G    L+ TDVAARGIDI  +  VIN TLP   + ++HR+G
Sbjct  424  IYGTLDQHARKNQLYQFRVGLTNVLVVTDVAARGIDIPVLANVINFTLPASSKIFIHRVG  483

Query  605  RVGRAERMGLAISLVATEKE  624
            R  RA   G A S+V  EKE
Sbjct  484  RTARAGNKGWAYSIV-NEKE  502


 Score = 55.1 bits (131),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 30/72 (42%), Positives = 43/72 (60%), Gaps = 4/72 (6%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F+  G+   I   + +  +  PT IQ ++IPLI+ G DV+  A TGSGKT AF +P+I 
Sbjct  100  SFASFGLTKFILANIAKKGYKQPTPIQRKTIPLIMEGRDVVGMARTGSGKTAAFVLPLI-  158

Query  63   IVYETLKDQQEG  74
               E LK +Q G
Sbjct  159  ---ERLKSRQPG  167


>sp|Q54CD6|DDX5_DICDI Probable ATP-dependent RNA helicase ddx5 
OS=Dictyostelium discoideum OX=44689 GN=ddx5 PE=3 SV=1
Length=697

 Score = 70.1 bits (170),  Expect = 5e-11, Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 139/325 (43%), Gaps = 55/325 (17%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN-GVDIVVGTP  347
             L++ P+REL  Q  +N     +      ++  +I GG++   Q+  LE     I++ TP
Sbjct  294  VLVLVPTRELGLQVHSNTLIITQLFG---IKTSVIYGGISKNLQIEQLEKEKPQILISTP  350

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GRL +++  G ++LS V  LVLDEAD +LS+G    + ++  QI   +      Q I+ S
Sbjct  351  GRLIEMIENGHVDLSSVTMLVLDEADKMLSKGLIPQLKQIRGQIRPDS------QNILFS  404

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT     +K++S+  +  P+     G   +P                       +HI+ D
Sbjct  405  ATFPD-SLKEVSKDWIKDPSIRLRIGSSELPKL---------------------NHIQQD  442

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                  + +P A         IK+L    +    KE K  + I+F     +   +    +
Sbjct  443  AQLIAHHKKPRA--------LIKLL----SEPQFKEKK--KTIVFFNKIKELKRISIMLL  488

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
            +     D          + G+     R++ + +F       L+ TD+  RGI I  +  +
Sbjct  489  KSNIKHD---------TIFGNIDQELREKLINKFSSSRSTLLLSTDIIGRGIHIDDIFNI  539

Query  588  INVTLPDEKQNYVHRIGRVGRAERM  612
            IN   P   + Y HR+GR GR++++
Sbjct  540  INYDFPRSLEQYCHRVGRAGRSDKV  564


>sp|Q6NZQ2|DDX31_MOUSE Probable ATP-dependent RNA helicase DDX31 
OS=Mus musculus OX=10090 GN=Ddx31 PE=2 SV=2
Length=687

 Score = 70.1 bits (170),  Expect = 5e-11, Method: Compositional matrix adjust.
 Identities = 44/148 (30%), Positives = 87/148 (59%), Gaps = 7/148 (5%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P AL++ P+RELA Q+ + +++  K      +   +++GG   + + + L  G++I++
Sbjct  177  DGPYALVLVPTRELALQSFDTVQKLLKPFT--WIVPGVLMGGEKRKSEKARLRKGINILI  234

Query  345  GTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
             TPGRL D + ST  L+ +++R+L++DEAD +L  G+   I  + N    V ++ ++ Q 
Sbjct  235  STPGRLVDHIKSTKNLHFNRIRWLIVDEADRILDLGFEKDITVILN---AVNAECQKRQN  291

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDL  431
            ++ SATL +  V +L +  +H P  + +
Sbjct  292  VLLSATL-TEGVTRLVDISLHNPVSISV  318


 Score = 59.7 bits (143),  Expect = 8e-08, Method: Compositional matrix adjust.
 Identities = 29/83 (35%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            LHG+ +  ER      F   +   L+CTDVA+RG+D+  V +++  + P     Y+HRIG
Sbjct  422  LHGNMEQEERTSVFHEFSHSETGVLLCTDVASRGLDLPQVTWIVQYSAPSSPAEYIHRIG  481

Query  605  RVGRAERMGLAISLVA-TEKEKV  626
            R  R    G ++ ++A +E E V
Sbjct  482  RTARIGCHGSSLLILAPSEAEYV  504


 Score = 49.7 bits (117),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 23/61 (38%), Positives = 39/61 (64%), Gaps = 1/61 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLP-TDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            AF E+ + P +   +  +  +   T +Q +SIP++L G D L+ ++TGSGKT A+ +PV+
Sbjct  104  AFQELDLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCVPVV  163

Query  62   Q  62
            Q
Sbjct  164  Q  164


>sp|Q0CMB0|ROK1_ASPTN ATP-dependent RNA helicase rok1 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=rok1 
PE=3 SV=2
Length=749

 Score = 70.1 bits (170),  Expect = 5e-11, Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 1/96 (1%)

Query  533  PDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTL  592
            P + G       LH +    +R + ++ F+KG++  L+ TD+ ARG+D  G+  V+N  +
Sbjct  540  PPEAGGSSRIAVLHSELSDSQRSEIMKGFRKGEIWILVTTDLLARGVDFRGINGVVNYDI  599

Query  593  PDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            P+    YVHR+GR GRA R G  +++    KE + Y
Sbjct  600  PNSAAVYVHRVGRTGRAGREG-GVAVTYYTKEDIPY  634


 Score = 40.8 bits (94),  Expect = 0.048, Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 18/82 (22%)

Query  1    MAAFSEM----GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGG--------------DV  42
            + +F E+     +   +A+ + E  + +PT++Q  ++PL LG                D+
Sbjct  191  LVSFKELRTKYKISRRLAENIAEQGFTVPTEVQLGTLPLQLGDSSVQQASKPGETVEPDL  250

Query  43   LMAAETGSGKTGAFSIPVIQIV  64
            L+ A TGSGKT +F IPVI  +
Sbjct  251  LVVAPTGSGKTLSFLIPVINKI  272


>sp|Q54BD6|DDX51_DICDI Probable ATP-dependent RNA helicase ddx51 
OS=Dictyostelium discoideum OX=44689 GN=ddx51 PE=3 SV=1
Length=563

 Score = 69.3 bits (168),  Expect = 6e-11, Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 5/121 (4%)

Query  511  IFCRTK-IDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL  569
            I C TK +D  +     ++  G  DK   +F+C          ER   L RFK   +  L
Sbjct  329  IICFTKSVDITHRLNTLLKLIGQVDKL--KFTCEEYSSSLSTVERADLLSRFKLNQIDIL  386

Query  570  ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            IC+D+ +RG+DI  +  VIN   P     YVHR+GR  RA   G++ ++V  +K ++ Y+
Sbjct  387  ICSDIMSRGMDIQDIDVVINYNTPPNITLYVHRVGRTARAGNFGVSYTIV--DKSEIKYY  444

Query  630  V  630
            +
Sbjct  445  I  445


 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 1/52 (2%)

Query  334  SVLENGVDIVVGTPGRLDDLVS-TGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            ++ E+ VDI+V TPGR+ D ++ T    L  + +LV+DEAD LL Q + D++
Sbjct  142  ALYESLVDIIVSTPGRIVDHINETLGFTLKYLNYLVIDEADRLLRQSFQDWL  193


 Score = 36.6 bits (83),  Expect = 0.92, Method: Compositional matrix adjust.
 Identities = 17/37 (46%), Positives = 25/37 (68%), Gaps = 2/37 (5%)

Query  28  IQAESIPLI--LGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +Q E +P I    G D+ + A TGSGKT A++IP++Q
Sbjct  41  VQQEIVPFINRTEGHDICVCAPTGSGKTLAYAIPLVQ  77


>sp|Q0U6X2|MAK5_PHANO ATP-dependent RNA helicase MAK5 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=MAK5 PE=3 SV=1
Length=817

 Score = 69.7 bits (169),  Expect = 6e-11, Method: Compositional matrix adjust.
 Identities = 44/98 (45%), Positives = 60/98 (61%), Gaps = 8/98 (8%)

Query  287  PKALIVEPSRELAEQTLNNIKQF--KKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            P ALI+ P+RELA Q   ++     K   + P +    + GG+A + Q   LE   DI+V
Sbjct  326  PLALIIAPTRELAHQITAHLTALCAKGAFEAPLIAS--VTGGLAVQKQRRQLEKA-DIIV  382

Query  345  GTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQG  379
            GTPGRL +++STG      + Q+RFLV+DEAD LLSQG
Sbjct  383  GTPGRLWEVISTGHGLLEKVKQIRFLVVDEADRLLSQG  420


 Score = 65.9 bits (159),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 35/84 (42%), Positives = 46/84 (55%), Gaps = 0/84 (0%)

Query  540  FSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNY  599
               + LH       R +++ERFK+     L+ TDVAARG+DI  V  VI+  LP     Y
Sbjct  566  LPALPLHSSMAQKARLRSIERFKERPGSILVATDVAARGLDIPKVELVIHYHLPRAADTY  625

Query  600  VHRIGRVGRAERMGLAISLVATEK  623
            VHR GR  RAE  G +I + A E+
Sbjct  626  VHRSGRTARAEASGSSILICAPEE  649


 Score = 54.7 bits (130),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 26/61 (43%), Positives = 42/61 (69%), Gaps = 0/61 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            +A+ E+ +  +I +++ ++ +  PT IQA +IP I+ G DV+  A TGSGKT AF IP+I
Sbjct  249  SAWEELELSTKILESLAKLKFSKPTTIQASTIPEIMAGRDVIGKASTGSGKTLAFGIPII  308

Query  62   Q  62
            +
Sbjct  309  E  309


>sp|Q0U397|MRH4_PHANO ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 
/ FGSC 10173) OX=321614 GN=MRH4 PE=3 SV=2
Length=658

 Score = 69.7 bits (169),  Expect = 6e-11, Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 138/349 (40%), Gaps = 69/349 (20%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAA---RDQLSVLENGV  340
            P  P+A+I+ PS EL  Q     K     +   K R   I   ++A   R+QL   E GV
Sbjct  311  PARPRAIILVPSAELVAQVGAVAKSLSHTV---KFRAAPISAKMSATVIRNQL-FNEKGV  366

Query  341  DIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR  400
            D+V+ TP  L  +  +    L++V  L+ DEAD L  + +      +   + + T   K 
Sbjct  367  DVVISTPPLLASIAESNPNILARVTHLICDEADSLFDRSFKPSTTEI---LERATPSLK-  422

Query  401  LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLG  460
             Q+I+CSAT+               P ++D    D  PD ++ +V P      R  + LG
Sbjct  423  -QLILCSATI---------------PKYLDKYLADRFPD-MNRLVTPNLHAIPRRVQ-LG  464

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH-KMDQAIIFCRTKIDC  519
               +  D  H   N    A +  +W   I    GEY     KE     + ++F   + D 
Sbjct  465  VVDVNKDPYHGNKNL---ACADTIWQ--IGRSTGEYDPAEGKEAVPTKRILVFVNEREDT  519

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV-------------  566
            + + QY + +G            +  H D  P  + + L  F   D              
Sbjct  520  EKVAQYLMSKG---------IDALAFHRDTDPSRQAKTLASFTGSDTSTAIKSSPDAPPK  570

Query  567  ------------RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI  603
                        + ++ TD+ +RGID   V +VI   +P    +++HR+
Sbjct  571  PELASKRTLANTKVIVTTDLGSRGIDTVSVRHVILYDVPHTTIDFIHRL  619


 Score = 38.1 bits (87),  Expect = 0.31, Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 50/96 (52%), Gaps = 20/96 (21%)

Query  3    AFSEMGVMPEIAQAVEE----MDWLLPTDIQAESIPLILG--------------GGD--V  42
            +F +M ++  +  A+++    +++  PT  Q+ ++P +LG              GG    
Sbjct  183  SFDKMPLLDTVQAAIKDALPALEYRSPTPAQSVAVPALLGLEAKKRTKATSTKKGGPEAF  242

Query  43   LMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGK  78
            L+AAETGSGKT A+ +P +  + +  + ++E  + +
Sbjct  243  LLAAETGSGKTLAYLLPTLDAIKKAEQQEKEDAEAQ  278


>sp|A5DLR3|DBP10_PICGU ATP-dependent RNA helicase DBP10 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP10 PE=3 
SV=2
Length=914

 Score = 69.7 bits (169),  Expect = 7e-11, Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 51/88 (58%), Gaps = 3/88 (3%)

Query  537  GHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEK  596
            GH  S +  +G    H RKQ L +F+      L+ TDVAARGIDI  +  V+N TLP   
Sbjct  412  GHLVSYI--YGTLDQHARKQQLYQFRAAYTNILVVTDVAARGIDIPVLANVVNYTLPGSS  469

Query  597  QNYVHRIGRVGRAERMGLAISLVATEKE  624
            + ++HR+GR  RA   G A S+V  EKE
Sbjct  470  KIFIHRVGRTARAGNKGWAYSIV-NEKE  496


 Score = 49.7 bits (117),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 22/60 (37%), Positives = 38/60 (63%), Gaps = 0/60 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F+  G+   + + + +  +  PT IQ ++IPL++   DV+  A TGSGKT AF +PV++
Sbjct  100  SFASFGLSKFLLKNIAKKGFKQPTPIQRKTIPLVMESRDVVGMARTGSGKTAAFVLPVVE  159


>sp|Q1E306|ROK1_COCIM ATP-dependent RNA helicase ROK1 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=ROK1 PE=3 SV=1
Length=730

 Score = 69.3 bits (168),  Expect = 7e-11, Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 1/96 (1%)

Query  533  PDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTL  592
            P + G       LH +    +R   +  F+KG++  LI TD+ ARG+D  G+  V+N  +
Sbjct  525  PAEAGGSSRIAVLHSELSDSKRSDVMAGFRKGEIWVLITTDLLARGVDFRGINGVVNYDI  584

Query  593  PDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            P+   +YVHR+GR GRA R G  +++    KE + Y
Sbjct  585  PNSSASYVHRVGRTGRAGREG-GVAVTFYTKEDIPY  619


 Score = 37.4 bits (85),  Expect = 0.56, Method: Compositional matrix adjust.
 Identities = 21/66 (32%), Positives = 33/66 (50%), Gaps = 21/66 (32%)

Query  22   WLLPTDIQAESIPLILGGG---------------------DVLMAAETGSGKTGAFSIPV  60
            + +PT++Q  S+PL+LG                       D+L+ A TGSGKT +F IP+
Sbjct  196  YTVPTEVQLGSLPLLLGNAPAPNERTADDESLRSQSEREPDLLVVAPTGSGKTLSFMIPL  255

Query  61   IQIVYE  66
            I  + +
Sbjct  256  INKIMK  261


>sp|Q4IPI1|ROK1_GIBZE ATP-dependent RNA helicase ROK1 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=ROK1 PE=3 SV=1
Length=693

 Score = 69.3 bits (168),  Expect = 8e-11, Method: Compositional matrix adjust.
 Identities = 79/305 (26%), Positives = 119/305 (39%), Gaps = 59/305 (19%)

Query  341  DIVVGTPGRLDDLVSTGKLN----LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTS  396
            DI+V TP  L   +++G  +    L  VR L+LDEAD LL     D + R          
Sbjct  329  DILVTTPFLLFKFLTSGPPSTQKVLPTVRDLILDEADVLL-----DPLFRDATMADWTAC  383

Query  397  DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK-----------GEDSVPDTVHHVV  445
                L+V   SAT+ S     ++EK+      +D+             + +VP+  H ++
Sbjct  384  TNTNLRVSFWSATMGSNIESMVTEKLTSRAQSLDITPKPFVRLVVGLKDTAVPNIAHKLI  443

Query  446  VPVNPKTDRLWERLGKSHIRTDDVH--AKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
               + +        GK       +H  A D++ P    P                     
Sbjct  444  YTASEQ--------GKLLALRQLLHPTASDDSGPPLRPP---------------------  474

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
                  ++F +T      L +    Q   P + G       LH       R   + +F+ 
Sbjct  475  -----FLVFTQTIDRATALHEEL--QYDIPLEAGGAARIAALHSGLTDSARSSIMRKFRA  527

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
            GD+  LI TDV ARG+D  GV  V+N  +P     YVHR GR GRA R G  I++    K
Sbjct  528  GDIWILITTDVLARGVDFAGVNGVVNYDVPGSSAGYVHRAGRTGRAGREG-GIAVTFYTK  586

Query  624  EKVWY  628
            E + +
Sbjct  587  EDIPF  591


 Score = 38.5 bits (88),  Expect = 0.25, Method: Compositional matrix adjust.
 Identities = 26/91 (29%), Positives = 44/91 (48%), Gaps = 17/91 (19%)

Query  1    MAAFSEM----GVMPEIAQAVEEMDWLLPTDIQAESIPLIL-------------GGGDVL  43
            + +F E+    G+  ++A  +    + +PT++Q  S+PL++             GG D L
Sbjct  154  LDSFGELRNAYGLSDKVADNLVFQGYRVPTEVQMGSLPLLVHPQAALKDEDGLDGGVDFL  213

Query  44   MAAETGSGKTGAFSIPVIQIVYETLKDQQEG  74
              A TGSGKT +F IP I  +     ++  G
Sbjct  214  AIAPTGSGKTISFLIPAINNILRRRSEENTG  244


>sp|P0CR04|ROK1_CRYNJ ATP-dependent RNA helicase ROK1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=ROK1 PE=3 SV=1
Length=620

 Score = 68.6 bits (166),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 36/96 (38%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query  544  CLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI  603
             +HG +   +R + ++ F+ G V  L+ T+V ARG+D  GV  VIN   P    +Y+HRI
Sbjct  451  AVHGGKAKTKRDEAIKDFRVGAVWMLVVTEVLARGMDFRGVKVVINYDFPQTVPSYIHRI  510

Query  604  GRVGRAERMGLAISLVATEKEKVWYHVCSS-RGKGC  638
            GR GRA R G AI+    E       + +  R  GC
Sbjct  511  GRTGRAGRPGKAITFFNIEDGPYLRTIANVLRSSGC  546


 Score = 44.3 bits (103),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 35/46 (76%), Gaps = 3/46 (7%)

Query  339  GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            G+D++V TP RL  L+ + +++L++ ++++LDE+D LLS   SDF+
Sbjct  298  GIDMLVATPERLHHLIDSRRISLARTKYVILDESDRLLS---SDFL  340


>sp|P0CR05|ROK1_CRYNB ATP-dependent RNA helicase ROK1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=ROK1 PE=3 SV=1
Length=620

 Score = 68.6 bits (166),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 36/96 (38%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query  544  CLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI  603
             +HG +   +R + ++ F+ G V  L+ T+V ARG+D  GV  VIN   P    +Y+HRI
Sbjct  451  AVHGGKAKTKRDEAIKDFRVGAVWMLVVTEVLARGMDFRGVKVVINYDFPQTVPSYIHRI  510

Query  604  GRVGRAERMGLAISLVATEKEKVWYHVCSS-RGKGC  638
            GR GRA R G AI+    E       + +  R  GC
Sbjct  511  GRTGRAGRPGKAITFFNIEDGPYLRTIANVLRSSGC  546


 Score = 44.7 bits (104),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 35/46 (76%), Gaps = 3/46 (7%)

Query  339  GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            G+D++V TP RL  L+ + +++L++ ++++LDE+D LLS   SDF+
Sbjct  298  GIDVLVATPERLHHLIDSRRISLARTKYVILDESDRLLS---SDFL  340


>sp|A7F2S3|SPB4_SCLS1 ATP-dependent rRNA helicase spb4 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=spb4 PE=3 SV=1
Length=625

 Score = 68.6 bits (166),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 33/88 (38%), Positives = 52/88 (59%), Gaps = 1/88 (1%)

Query  539  QFSCVCLHGDRKPHERKQNLERFKKG-DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQ  597
            QF+ V LHG   P+ R++N  ++        L+ TDVAARG+DI  V  V+ +  P + +
Sbjct  317  QFALVSLHGKHPPNVRQRNFSKYVAAVSPTILLTTDVAARGLDIPQVDLVVQIDPPSDPK  376

Query  598  NYVHRIGRVGRAERMGLAISLVATEKEK  625
             ++HR GR GRA R GL++  +   +E+
Sbjct  377  VFLHRCGRAGRAGRKGLSVIFLQPGREE  404


 Score = 57.8 bits (138),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 42/133 (32%), Positives = 71/133 (53%), Gaps = 23/133 (17%)

Query  289  ALIVEPSRELAEQ-----------------TLNNIKQFKKYIDNPKLREL--LIIGGVA-  328
            A+IV P+RELA Q                  L  +++ +K   +  LR +  L++GG   
Sbjct  90   AIIVSPTRELATQIHSVLTSLLAFHEPSAGALKPLEEGEKRKPSSTLRVVSQLLLGGTTT  149

Query  329  -ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRF--LVLDEADGLLSQGYSDFIN  385
             A+D    L+N  ++++ TPGRL +L+S+  ++  Q  F  LVLDEAD LL  G+ D + 
Sbjct  150  PAQDLSRFLKNSPNLLISTPGRLLELLSSPHVHCPQSSFEVLVLDEADRLLDLGFKDDLQ  209

Query  386  RMHNQIPQVTSDG  398
            ++ +++P+    G
Sbjct  210  KILSRLPKQRRTG  222


 Score = 47.4 bits (111),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 0/50 (0%)

Query  13  IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           I  A++ M +   T +QA +IPL +G  DV++ A TGSGKT +F IPV++
Sbjct  25  ILDAIKSMGFEKMTPVQASTIPLFMGNKDVVVEAVTGSGKTLSFLIPVVE  74


>sp|Q1E9B7|MRH4_COCIM ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Coccidioides immitis (strain RS) OX=246410 GN=MRH4 
PE=3 SV=1
Length=656

 Score = 68.2 bits (165),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 102/366 (28%), Positives = 155/366 (42%), Gaps = 49/366 (13%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL--ENGVDIVV  344
            PKA+I+ P+ EL EQ    +KQ    +   K R  L+      R     L   NG+DI+V
Sbjct  296  PKAIILVPTSELVEQIGRIVKQLAHTV---KYRSALLASNYTPRKIRKTLFNPNGLDILV  352

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TP  +  +        S+V  LV+DEAD L  + +S   N + ++           Q+I
Sbjct  353  TTPYLVASIAEANPYIFSRVTHLVVDEADSLFDKSFSPKTNTIIDRTAPTLK-----QLI  407

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGED--SVPDTVHHVVVPVNPK----------T  452
            +CSAT+      +L E+   FP    L   +  ++P  V   VV ++ +           
Sbjct  408  LCSATIPRSLDNRLRER---FPQIRRLVTPNLHAIPRRVQLGVVDIDKEPYRGRRHLACA  464

Query  453  DRLWERLGKSHIRTD-DV--HAKDNTRPGA-----NSPEMWSEAIKIL--KGEYAV---R  499
            D +W  +G+S    D DV         P +     N  E  +E  + L  KG  AV   R
Sbjct  465  DAIWS-IGRSGNPYDADVGYQVTGQKEPKSIIVFVNERETAAEVAEFLVTKGINAVSLTR  523

Query  500  AIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLE  559
               E +  Q +    T+ +    E Y + +G   D     F  V     R  +ER   L 
Sbjct  524  DTSEKRQAQILAEFTTEKNPPQPEDYKMLKGNRSDDDSVPFVNV-----RPGNERSNRL-  577

Query  560  RFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
                 + + L+ TD+ +RGID   V  VI   +P    +++HR+GR+GR  R G  I LV
Sbjct  578  ----SNTKVLVVTDLGSRGIDTVAVKTVILYDVPHSTIDFIHRLGRLGRMGRRGRGIVLV  633

Query  620  ATEKEK  625
              +  K
Sbjct  634  GKKDRK  639


 Score = 47.4 bits (111),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 45/89 (51%), Gaps = 22/89 (25%)

Query  1    MAAFSEMGVMPEIAQAVEE-----MDWLLPTDIQAESIPLILGGGDV-------------  42
            + +F +  ++P + Q+V +     ++++ PT IQ  +IP IL  G               
Sbjct  156  ITSFDQFDLLPSVRQSVYDSALPGLEYVTPTPIQRLAIPAILRQGSATPKPEEGQEDMPR  215

Query  43   ----LMAAETGSGKTGAFSIPVIQIVYET  67
                L+AAETGSGKT A+ +PV+  +  T
Sbjct  216  FDQYLLAAETGSGKTLAYLLPVVDAIKRT  244


>sp|Q0CZS8|HAS1_ASPTN ATP-dependent RNA helicase has1 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=has1 
PE=3 SV=1
Length=576

 Score = 68.2 bits (165),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 33/87 (38%), Positives = 46/87 (53%), Gaps = 0/87 (0%)

Query  542  CVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH  601
             + LHG  K   R Q    F       LICTDVAARG+DI  V Y+I    PDE + Y+H
Sbjct  372  VLALHGKLKQQTRTQRFFEFCNATQGTLICTDVAARGLDIPAVDYIIQFDPPDEPKAYIH  431

Query  602  RIGRVGRAERMGLAISLVATEKEKVWY  628
            R+GR  R  +  +  S++  +  +V +
Sbjct  432  RVGRTARGTKGKIGRSIMLLQPSEVGF  458


 Score = 53.9 bits (128),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 46/167 (28%), Positives = 79/167 (47%), Gaps = 8/167 (5%)

Query  277  VTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
            ++  +F P N    +I+ P+RELA Q     K+  ++         ++IGG   R +   
Sbjct  160  LSALRFKPRNGTGVIIITPTRELALQIFGVAKELCEFHSQTYG---IVIGGANRRAEAEK  216

Query  336  LENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV  394
            L  GV++++ TPGR LD L +T        + LVLDEAD  L  G+   + ++   +P  
Sbjct  217  LNKGVNLLIATPGRLLDHLQNTQGFVYKNCKVLVLDEADRCLDVGFEAELRQIVKILP--  274

Query  395  TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV  441
             S+ ++  +   + T    D+ ++S K       VD + E +  D V
Sbjct  275  -SEERQTLLFSATQTTKVEDLARISLKPGPLYINVDHRKEHATVDGV  320


 Score = 53.1 bits (126),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 25/61 (41%), Positives = 39/61 (64%), Gaps = 0/61 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F E+ +     +A+ +M +   T+IQ  +IP  L G D+L AA+TGSGKT AF IP +++
Sbjct  100  FDELNLSEPTMKAIRQMGFETMTEIQQRTIPPTLAGRDILGAAKTGSGKTLAFLIPAVEM  159

Query  64   V  64
            +
Sbjct  160  L  160


>sp|A6RMZ2|SPB4_BOTFB ATP-dependent rRNA helicase spb4 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=spb4 PE=3 SV=1
Length=626

 Score = 67.8 bits (164),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 33/88 (38%), Positives = 51/88 (58%), Gaps = 1/88 (1%)

Query  539  QFSCVCLHGDRKPHERKQNLERFKKG-DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQ  597
            QF  V LHG   P+ R++N  ++        L+ TDVAARG+DI  V  V+ +  P + +
Sbjct  318  QFGLVSLHGKHPPNVRQRNFSKYVAAVSPTILLTTDVAARGLDIPQVDLVVQIDPPSDPK  377

Query  598  NYVHRIGRVGRAERMGLAISLVATEKEK  625
             ++HR GR GRA R GL++  +   +E+
Sbjct  378  VFLHRCGRAGRAGRKGLSVIFLQPGREE  405


 Score = 57.4 bits (137),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 42/133 (32%), Positives = 70/133 (53%), Gaps = 23/133 (17%)

Query  289  ALIVEPSRELAEQ-----------------TLNNIKQFKKYIDNPKLREL--LIIGGVA-  328
            A+IV P+RELA Q                  L  +++ +K   +  LR +  L++GG   
Sbjct  90   AIIVSPTRELATQIHSVLTSLLKFHEPSAEALQPLEEGEKRKPSSTLRVIPQLLLGGTTT  149

Query  329  -ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRF--LVLDEADGLLSQGYSDFIN  385
             A+D    L+N  ++++ TPGRL +L+S+  ++  Q  F  LVLDEAD LL  G+ D + 
Sbjct  150  PAQDLSRFLKNSPNLLISTPGRLLELLSSPHVHCPQSSFEVLVLDEADRLLDLGFKDDLQ  209

Query  386  RMHNQIPQVTSDG  398
            ++  ++P+    G
Sbjct  210  KILGRLPKQRRTG  222


 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 24/59 (41%), Positives = 37/59 (63%), Gaps = 4/59 (7%)

Query  8   GVMPEIAQ----AVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            + P +A+    A+  M +   T +QA +IPL +G  DV++ A TGSGKT +F IPV++
Sbjct  16  ALTPSLAEWVLDAISSMGFEKMTPVQASTIPLFMGNKDVVVEAVTGSGKTLSFLIPVVE  74


>sp|Q6BKH3|DBP7_DEBHA ATP-dependent RNA helicase DBP7 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP7 PE=3 SV=1
Length=798

 Score = 67.8 bits (164),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 46/165 (28%), Positives = 88/165 (53%), Gaps = 14/165 (8%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            A+I+ P+REL  Q    ++   +   +  +   ++IGG   + + + L  GV+I+V TPG
Sbjct  241  AIILVPTRELCTQIYGVLETLVRC--HHHIVPGIVIGGEKKKSEKARLRKGVNILVATPG  298

Query  349  RL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV----  403
            RL D + +T  L++SQ+R+L+LDE D L   G+ + I ++ + I + +   + +      
Sbjct  299  RLADHMENTTSLDVSQLRWLILDEGDRLTELGFEETITKITDNISKNSKISETIHKYQGL  358

Query  404  ------IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH  442
                  ++CSAT+   +VKKL   I++ P  + +     +  T++
Sbjct  359  PTERVNVLCSATIQD-NVKKLGNMILNNPETISVDSNKQIEGTLN  402


 Score = 50.1 bits (118),  Expect = 8e-05, Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 9/85 (11%)

Query  541  SCVC-LHGDRKPHERKQNLERFKK--------GDVRFLICTDVAARGIDIHGVPYVINVT  591
            SCV  LHG     +R   L+ F K             L CTDVA+RG+D+  +  VI   
Sbjct  535  SCVYKLHGSLSQQQRATTLQAFIKEKNEGKNSAKHSILFCTDVASRGLDLPNISSVIEYD  594

Query  592  LPDEKQNYVHRIGRVGRAERMGLAI  616
             P   ++++HRIGR  R    G A+
Sbjct  595  PPFSVEDHLHRIGRSARVGNEGSAV  619


 Score = 37.7 bits (86),  Expect = 0.47, Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 34/63 (54%), Gaps = 2/63 (3%)

Query  2    AAFSEMGVMPEIA-QAVEEMDWLLPTDIQAESIP-LILGGGDVLMAAETGSGKTGAFSIP  59
              F  +G+  ++A    E + +  PT +Q   IP LI    D+ + A+TGSGKT +F +P
Sbjct  161  TTFDGLGLNDKLATHLTESLRFKAPTKVQRSVIPSLIATQRDLFVKAQTGSGKTLSFLLP  220

Query  60   VIQ  62
            +  
Sbjct  221  IFH  223


>sp|A5E1N2|ROK1_LODEL ATP-dependent RNA helicase ROK1 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=ROK1 PE=3 SV=1
Length=553

 Score = 67.4 bits (163),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 67/123 (54%), Gaps = 8/123 (7%)

Query  544  CLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI  603
             +H +R P +R + ++RFK GD+  LI TDV ARG+D  GV  VIN  +P   Q YVHRI
Sbjct  395  VIHAERTPKQRDEVIKRFKNGDIWVLITTDVLARGVDFKGVNMVINYDVPQSAQAYVHRI  454

Query  604  GRVGRAERMGLAISLVATEKEKVWYHVCS-SRGKGCYNTRLKEDGGCTIWYNEMQLLSEI  662
            GR GR  R G A++    E +K    + +  +  GC +       G + W  ++  LS+ 
Sbjct  455  GRTGRGGRSGKAVTFFTKEDDKAVKPIINVMKQSGCTD-------GLSDWMEDLGKLSKR  507

Query  663  EEH  665
            E+ 
Sbjct  508  EKR  510


 Score = 55.1 bits (131),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 89/171 (52%), Gaps = 10/171 (6%)

Query  277  VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL  336
            V+Q     +  + LI+ P+ ELA Q    ++   K      L   ++   +A +    V+
Sbjct  183  VSQNVLKNHGIRGLIISPTNELAVQIFQQLEIISK---GKGLNIAILSKQLAGKISNDVV  239

Query  337  E-NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
            + +  DI+V TP RL D+V  GK++LS+V  LV+DEAD L   G+++  + + +    V 
Sbjct  240  KASKYDILVSTPLRLIDVVKLGKVDLSKVTQLVIDEADKLFDHGFAEQTDELLSHCTNV-  298

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVV  446
                +++  + SAT+ S  V++++  IM  P  V +  +++  +T+   +V
Sbjct  299  ----KIRKSMFSATIPS-GVEEMAHSIMKDPIRVIIGHKEAASNTIEQKLV  344


 Score = 47.8 bits (112),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 21/44 (48%), Positives = 31/44 (70%), Gaps = 0/44 (0%)

Query  19   EMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            + +++ PT IQ E+IP+ L   D++  A TGSGKT AF IP++Q
Sbjct  137  DAEFVEPTPIQCEAIPITLANRDLIACAPTGSGKTLAFLIPLLQ  180


>sp|A4QX49|DBP7_PYRO7 ATP-dependent RNA helicase DBP7 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=DBP7 PE=3 SV=1
Length=825

 Score = 67.4 bits (163),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 42/146 (29%), Positives = 81/146 (55%), Gaps = 16/146 (11%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            A+++ P+REL +Q    +++  +    P +    +IGG +   + + +  G++I++ TPG
Sbjct  222  AIVLAPTRELCKQIATVLEKLLRCA--PWIVSTTVIGGESKHSEKARIRKGINILIATPG  279

Query  349  RLDD-LVSTGKLNLSQVRFLVLDEADGLLSQGYSD----FINRMHNQ-IPQVTSDGKRLQ  402
            RL D L +T  L++S  R+L+LDE D ++  G+ D     +++M    + ++  DG +L+
Sbjct  280  RLKDHLDNTKVLDVSLARWLILDEGDRMMEMGFMDDLKEIVSKMREAPLKKINPDGIQLE  339

Query  403  --------VIVCSATLHSFDVKKLSE  420
                     ++CSATL    V++L E
Sbjct  340  PALPTRRVTVLCSATLDHAQVRRLGE  365


 Score = 50.8 bits (120),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 29/73 (40%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query  545  LHGDRKPHERKQNLERFKKG-DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI  603
            LHG      R   L+ F K  D   LI TD+++RG+D+  V  VI         ++VHRI
Sbjct  518  LHGSLAQPVRTATLDSFSKSKDPSILITTDISSRGLDVPAVDLVIEYDPAFAVADHVHRI  577

Query  604  GRVGRAERMGLAI  616
            GR  RA R G A+
Sbjct  578  GRTARAGRPGKAV  590


 Score = 41.6 bits (96),  Expect = 0.033, Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 3/83 (4%)

Query  2    AAFSEMGVMPEIAQAVE-EMDWLLPTDIQAESIP-LILGGGDVLMAAETGSGKTGAFSIP  59
            A F+ +G+   IAQ +  +++   PT IQ  ++P L+    D  + A+TGSGKT A+ +P
Sbjct  131  ATFAALGLSRRIAQHLSAKLELKAPTAIQHRAVPHLVTTDEDAFLQAQTGSGKTLAYLLP  190

Query  60   VIQIVYETLKDQQEGKKGKTTIK  82
            ++  +   L   ++G   K   K
Sbjct  191  IVNRIL-ALNQNEDGTISKDASK  212


>sp|P0CR03|DBP8_CRYNB ATP-dependent RNA helicase DBP8 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=DBP8 PE=3 SV=1
Length=619

 Score = 67.4 bits (163),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 38/106 (36%), Positives = 56/106 (53%), Gaps = 5/106 (5%)

Query  540  FSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNY  599
               V LH      +R  +L RF+  +V  L+ TDV +RG+DI  V  VIN   P    +Y
Sbjct  463  IPSVPLHSHLTQPQRLLSLARFRAHEVPVLVTTDVGSRGLDIPEVAMVINWDCPRRSDDY  522

Query  600  VHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            VHR+GR  RA R G+A++++ TE++     +         N RL+E
Sbjct  523  VHRVGRTARAGRGGVAVTII-TERDTELVKIIEDE----VNVRLEE  563


 Score = 61.2 bits (147),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 59/107 (55%), Gaps = 6/107 (6%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            A+++ P+RELA Q         K +    L    I+GG+    Q   LE    I+V TPG
Sbjct  223  AVVLTPTRELAYQLSEQFLVIGKPLG---LTTATIVGGMDMMKQAQELEARPHIIVATPG  279

Query  349  RLDDLVSTGKL---NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP  392
            RL DL+ +G +    LS+VR LVLDEAD +L+  ++  +  + +QIP
Sbjct  280  RLCDLLRSGGVGPGKLSRVRTLVLDEADRMLTPSFAPELAYLFSQIP  326


 Score = 46.6 bits (109),  Expect = 9e-04, Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 37/59 (63%), Gaps = 0/59 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  +G+   +  A+  ++   PT+IQA  +  IL G D +  A+TGSGKT AF++P+++
Sbjct  154  FESLGLSRPLITALASINIKKPTEIQAACVEPILSGRDCIGGAKTGSGKTMAFALPIVE  212


>sp|P0CR02|DBP8_CRYNJ ATP-dependent RNA helicase DBP8 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=DBP8 PE=3 SV=1
Length=619

 Score = 67.0 bits (162),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 38/106 (36%), Positives = 56/106 (53%), Gaps = 5/106 (5%)

Query  540  FSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNY  599
               V LH      +R  +L RF+  +V  L+ TDV +RG+DI  V  VIN   P    +Y
Sbjct  463  IPSVPLHSHLTQPQRLLSLARFRAHEVPVLVTTDVGSRGLDIPEVAMVINWDCPRRSDDY  522

Query  600  VHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            VHR+GR  RA R G+A++++ TE++     +         N RL+E
Sbjct  523  VHRVGRTARAGRGGVAVTII-TERDTELVKIIEDE----VNVRLEE  563


 Score = 61.6 bits (148),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 59/107 (55%), Gaps = 6/107 (6%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            A+++ P+RELA Q         K +    L    I+GG+    Q   LE    I+V TPG
Sbjct  223  AVVLTPTRELAYQLSEQFLVIGKPLG---LTTATIVGGMDMMKQAQELEARPHIIVATPG  279

Query  349  RLDDLVSTGKL---NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP  392
            RL DL+ +G +    LS+VR LVLDEAD +L+  ++  +  + +QIP
Sbjct  280  RLCDLLRSGGVGPGKLSRVRTLVLDEADRMLTPSFAPELAYLFSQIP  326


 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 0/61 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F  +G+   +  A+  ++   PT+IQA  +  IL G D +  A+TGSGKT AF++P+++ 
Sbjct  154  FESLGLSHPLITALASINIKKPTEIQAACVEPILSGRDCIGGAKTGSGKTMAFALPIVER  213

Query  64   V  64
            +
Sbjct  214  I  214


>sp|O74393|MAK5_SCHPO ATP-dependent RNA helicase mak5 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=mak5 
PE=1 SV=1
Length=648

 Score = 67.0 bits (162),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 48/87 (55%), Gaps = 0/87 (0%)

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            LH      +R Q+LE+FK      L+CTDVAARGIDI  V +VI+  +P     YVHR G
Sbjct  419  LHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTADMYVHRSG  478

Query  605  RVGRAERMGLAISLVATEKEKVWYHVC  631
            R  RA   G++I +   ++      +C
Sbjct  479  RTARANEDGVSILMCGPKELSQLKRLC  505


 Score = 63.9 bits (154),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 61/102 (60%), Gaps = 5/102 (5%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +AL+V P+RELA Q   + +  K    +P +R + I GG+A + Q  +L     +VV TP
Sbjct  194  QALVVAPTRELAHQICQHFELIKP---SPNIRVMSITGGLAVQKQQRLLNKHPHVVVATP  250

Query  348  GRLDDLVSTGKL--NLSQVRFLVLDEADGLLSQGYSDFINRM  387
            GRL  +++   L  N  +++ LVLDEAD LL + + + ++++
Sbjct  251  GRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKL  292


 Score = 42.4 bits (98),  Expect = 0.016, Method: Compositional matrix adjust.
 Identities = 21/62 (34%), Positives = 38/62 (61%), Gaps = 0/62 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++A++   + PE+  ++ +  +  P  IQ+  IP    G D++  A+TGSGKT AF IP+
Sbjct  121  VSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPI  180

Query  61   IQ  62
            ++
Sbjct  181  LE  182


>sp|Q0UP45|SPB4_PHANO ATP-dependent rRNA helicase SPB4 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=SPB4 PE=3 SV=1
Length=633

 Score = 67.0 bits (162),  Expect = 4e-10, Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 160/386 (41%), Gaps = 86/386 (22%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKY-------------------IDNP----------KLR  319
            A+I+ P+RELA Q    +    K+                    D P          K  
Sbjct  87   AIIISPTRELATQIHTVLSSLLKFHAPSAAMLEPDDEDTDMEDADTPPKPTFPPGTLKAV  146

Query  320  ELLIIGG--VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRF--LVLDEADGL  375
              L++GG    A+D  + L+   +I++GTPGRL +L+ +  ++  Q  F  LV+DEAD L
Sbjct  147  PQLLLGGSVTPAQDLSAFLKKSPNILIGTPGRLLELLRSPHVHCPQSSFDALVMDEADRL  206

Query  376  LSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK---  432
            L  G+ + + ++ +++P+    G      + SA++ S  V +L    +  P  + +K   
Sbjct  207  LDLGFKEDLQKIISRLPKQRRTG------LFSASM-SEAVDQLIRVGLRNPVRIAVKVKA  259

Query  433  ---GEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAI  489
               GED     +     P +         L  S++ T          P    P M     
Sbjct  260  RATGEDG---KIEDKRTPAS---------LQMSYLVTP---------PSHKIPAMK----  294

Query  490  KILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDR  549
            KIL          + +  ++I++  T    D  +    +   G D        V LHG  
Sbjct  295  KILSS-------LQPQPQKSILYLSTCFSVDYFQHVLPEVLQGYD-------IVPLHGKH  340

Query  550  KPHERKQNLERFKKG-DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
                R++N  +F        L+ TDVAARG+DI  V  V  +  P + + ++HR GR GR
Sbjct  341  PDKVRRKNFNKFVDSVTPSILLTTDVAARGLDIPSVDLVFQLDPPSDPKTFIHRCGRAGR  400

Query  609  AERMGLAISLVATEKEKVWYHVCSSR  634
            A R GLA++ +   +E+ +      R
Sbjct  401  AGRRGLAVTFLNPGREEDYIEFLQVR  426


 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 0/50 (0%)

Query  13  IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           I  AV+ M ++  T +Q  +IP+ +   DV++ A TGSGKT AF IP+++
Sbjct  22  IIDAVDAMGFVKTTPVQHAAIPMFMKNSDVVVEAVTGSGKTLAFLIPIVE  71


>sp|Q5AZA6|DBP9_EMENI ATP-dependent RNA helicase dbp9 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=dbp9 PE=3 SV=1
Length=610

 Score = 66.6 bits (161),  Expect = 5e-10, Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 76/150 (51%), Gaps = 8/150 (5%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            A   LI+ P+RELAEQ    I  F  +     +R + +   V+   Q ++L +  DIVV 
Sbjct  102  ATTGLILVPTRELAEQVQKVITTFAAFC-GKDVRSVNLTQKVSDAVQKAMLADYPDIVVS  160

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TP R+   + T  L+L  +  LV+DEAD +LS GY D IN +   IP      + +Q  +
Sbjct  161  TPARVIANLGTSALSLENLTHLVIDEADLVLSYGYEDDINALSKAIP------RGVQTFL  214

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGED  435
             SATL + +V  L       P  + L+ +D
Sbjct  215  MSATLTA-EVDTLKGLFCRSPVILKLEDKD  243


 Score = 58.9 bits (141),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 25/63 (40%), Positives = 42/63 (67%), Gaps = 0/63 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F  + + P + QA+ +  +  PT +QA++IPL L G D+L  A+TGSGKT A+ +P++Q 
Sbjct  30  FETLNLDPRLRQALVKEKFSKPTPVQAKAIPLALEGKDILARAKTGSGKTAAYVLPILQT  89

Query  64  VYE  66
           + +
Sbjct  90  ILQ  92


 Score = 35.0 bits (79),  Expect = 3.0, Method: Compositional matrix adjust.
 Identities = 21/44 (48%), Positives = 28/44 (64%), Gaps = 0/44 (0%)

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +RGID   V  V+N  LP   ++Y HRIGR GR  + G+A+S V
Sbjct  389  SRGIDFQNVACVLNFDLPTSSKSYTHRIGRTGRGGKTGMALSFV  432


>sp|Q59S59|MRH4_CANAL ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 
GN=MRH4 PE=3 SV=2
Length=555

 Score = 66.2 bits (160),  Expect = 6e-10, Method: Compositional matrix adjust.
 Identities = 88/379 (23%), Positives = 150/379 (40%), Gaps = 78/379 (21%)

Query  288  KALIVEPSRELAEQTLNNIKQ--------------FKKYIDNPKLRELLIIG-----GVA  328
            K++I+ P+ EL +Q    +++              F  +++ P+ + + I       G A
Sbjct  201  KSVILLPTNELVDQVYETLQRANSFELDHKGAPGNFTSFLELPENKTMNITTMKLGQGEA  260

Query  329  ARDQLSVLENG--VDIVVGTPGRLDDLVSTGKLN-----LSQVRFLVLDEADGLLSQGYS  381
                   LE    +D+++ TPG++        +N      + V++ VLDEAD L    + 
Sbjct  261  PVRLFRQLETKGPIDVLITTPGKIVAFSKLVNINRPFRVFANVKYCVLDEADTLFDDSFE  320

Query  382  DFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV  441
                   N    +T   K L +I+ SAT+     KKLS+    FP    L          
Sbjct  321  ------KNTTDVITHFPKLLDLILVSATIPKVFEKKLSK---LFPDQRSL----------  361

Query  442  HHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVR--  499
              V  P   K  R        +I+   + A D      + P   ++A+      YA+   
Sbjct  362  IRVATPSLHKVPR--------NIKVMTIDA-DVAPYNGSKPRCLAQAL------YAISKD  406

Query  500  AIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLE  559
              +   + + I+F   K + D + +  I +      K      V + G     +RK  L+
Sbjct  407  GTEPGYVKRIIVFVNEKSEVDGIVESMITK-----YKVRPEDIVGVSGSVNIRDRKDMLQ  461

Query  560  RFKK-----------GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
             F +             V+ L+ TD+ ARG++  GV  VI + LP    + VHR+GR GR
Sbjct  462  PFLQPAELIENDDFGSKVKILVTTDLLARGLNFQGVKNVILLGLPRNSVDLVHRLGRTGR  521

Query  609  AERMGLAISLVATEKEKVW  627
              + G    +V  + +K W
Sbjct  522  MNQNGRVFVIVDKKSKKSW  540


>sp|A6RSH5|DBP7_BOTFB ATP-dependent RNA helicase dbp7 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=dbp7 PE=3 SV=1
Length=877

 Score = 66.6 bits (161),  Expect = 6e-10, Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 85/164 (52%), Gaps = 27/164 (16%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            A+I+ P+REL +Q    +++  +    P +    + GG + + + + L  GV+I+V TPG
Sbjct  337  AIILSPTRELCKQIAAVLEKVLRCA--PWIVGTTVNGGESKQSEKARLRKGVNILVATPG  394

Query  349  RL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM-----HNQIPQVTSD----G  398
            RL D L +T  LN++ VR+LVLDE D L+  G+ + I  +        + +  SD     
Sbjct  395  RLADHLDNTEVLNVATVRWLVLDEGDRLMELGFEEEIKGIVEKIGRRSVAKANSDMGSLP  454

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH  442
            KR   I+CSAT+   +V++L              GE S+ D VH
Sbjct  455  KRRVTILCSATM-KMNVQRL--------------GEISLKDAVH  483


 Score = 58.2 bits (139),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 54/106 (51%), Gaps = 4/106 (4%)

Query  545  LHGDRKPHERKQNLERFKK-GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI  603
            LHG    + R   L+ F +  D   +ICTDVA+RG+D+  V +VI    P   ++++HR+
Sbjct  612  LHGSLAQNIRTATLKAFSESADPCVMICTDVASRGLDLPNVDFVIEYDPPFSAEDHLHRV  671

Query  604  GRVGRAERMGLAISLVATEKEKVWYHVCSS---RGKGCYNTRLKED  646
            GR  RA R G A+  +    E+ +  + +S    GK        ED
Sbjct  672  GRTARAGREGRALIFLMPGVEEEYVSILASGYREGKKALTRHTAED  717


 Score = 42.0 bits (97),  Expect = 0.021, Method: Compositional matrix adjust.
 Identities = 23/66 (35%), Positives = 39/66 (59%), Gaps = 2/66 (3%)

Query  1    MAAFSEMGVMPEIAQAVE-EMDWLLPTDIQAESIP-LILGGGDVLMAAETGSGKTGAFSI  58
            MA F+ +G+   +A  +  ++D   PT IQ  S+  L+    D  + AETGSGKT A+ +
Sbjct  254  MATFTNLGLSRRLAAHLSTKLDMKAPTAIQKASVQQLVSDDSDAFIQAETGSGKTLAYLL  313

Query  59   PVIQIV  64
            P+++ +
Sbjct  314  PIVERI  319


>sp|Q5K5B6|RH57_ORYSJ DEAD-box ATP-dependent RNA helicase 57 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os07g0647900 PE=2 
SV=2
Length=540

 Score = 65.9 bits (159),  Expect = 7e-10, Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 0/88 (0%)

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            +H D    +R+  ++  + G    LI T+V ARG+D  GV  VIN   P+    Y+HRIG
Sbjct  415  IHADLDEEQRQDAVDNLRAGKTWVLIATEVIARGMDFKGVNCVINYDFPESASAYIHRIG  474

Query  605  RVGRAERMGLAISLVATEKEKVWYHVCS  632
            R GRA R G AI+    E +    ++ +
Sbjct  475  RSGRAGRSGEAITFFTEEDKPFLRNIAN  502


 Score = 53.9 bits (128),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 11/137 (8%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            KA+I+ P+RELA QT    K+  K     K    L+   ++       +    DI++ TP
Sbjct  217  KAVILCPTRELAAQTTRECKKLAK---GRKFYIKLMTKDLSKSGNFKDMH--CDILISTP  271

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
             RLD  V    L+LS+V +LVLDE+D L   G+ + I    + + +  S+   ++ +  S
Sbjct  272  LRLDHAVQKRDLDLSRVEYLVLDESDKLFELGFVEVI----DSVVKACSNPSIIRSLF-S  326

Query  408  ATLHSFDVKKLSEKIMH  424
            ATL    ++ L+  IMH
Sbjct  327  ATLPD-SIETLARTIMH  342


 Score = 42.0 bits (97),  Expect = 0.018, Method: Compositional matrix adjust.
 Identities = 18/37 (49%), Positives = 25/37 (68%), Gaps = 0/37 (0%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            PT IQ ++IP++L G +    A TGSGKT AF  P++
Sbjct  169  PTPIQRQAIPILLSGRECFACAPTGSGKTLAFLFPIL  205


>sp|P47664|Y425_MYCGE Probable ATP-dependent RNA helicase MG425 
OS=Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / 
NCTC 10195 / G37) OX=243273 GN=MG425 PE=3 SV=1
Length=449

 Score = 65.9 bits (159),  Expect = 7e-10, Method: Compositional matrix adjust.
 Identities = 39/109 (36%), Positives = 61/109 (56%), Gaps = 9/109 (8%)

Query  286  APKALIVEPSRELAEQ---TLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDI  342
            A   L++ P+REL EQ   T +NI +      N KLR + +IGGV A  Q+  ++    I
Sbjct  72   AKPTLVIAPTRELVEQIKTTFSNIAK------NKKLRIISLIGGVPAWKQIKKIKTNPQI  125

Query  343  VVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQI  391
            +VGT GR+ DL+    ++ S +  L++DE D +L +G+   I  +  QI
Sbjct  126  IVGTMGRIMDLLERKAIHFSDLEHLIIDEVDLMLDRGFKKQIFNLLEQI  174


 Score = 63.2 bits (152),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 10/128 (8%)

Query  501  IKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLER  560
            IK  ++   I+FC TK   D+L  +          + ++     LHGD+K   R++NL+ 
Sbjct  242  IKTAQVKSIIVFCDTKKLVDDLHVFL---------RKNELRTFALHGDKKQFIRERNLKI  292

Query  561  FKKG-DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            F        L+ TD+  RGI +  +  VIN +     + Y++R+GR GR    G  ++  
Sbjct  293  FANTKQPTILVTTDLIGRGIHVEAIDMVINYSACLNLEAYINRMGRTGRNNHKGTCVTFC  352

Query  620  ATEKEKVW  627
             ++++KV+
Sbjct  353  TSQEKKVF  360


 Score = 50.1 bits (118),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 25/74 (34%), Positives = 43/74 (58%), Gaps = 3/74 (4%)

Query  2   AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
           + F E+G+   + + +  +    PT IQ  SIP  L   ++++ + TG+GKT AF+IP+I
Sbjct  3   STFHELGISQTLIETLNALHINKPTKIQQISIPQFLSEKNLIVHSPTGTGKTAAFAIPII  62

Query  62  QIVYETLKDQQEGK  75
           +   + LK+ Q  K
Sbjct  63  E---KLLKEDQTAK  73


>sp|Q0CY48|DBP9_ASPTN ATP-dependent RNA helicase dbp9 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dbp9 
PE=3 SV=2
Length=619

 Score = 66.2 bits (160),  Expect = 7e-10, Method: Compositional matrix adjust.
 Identities = 51/161 (32%), Positives = 80/161 (50%), Gaps = 8/161 (5%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            A   LI+ P+RELAEQ  N I  F  +     +R + +   V+   Q ++L +  D++V 
Sbjct  101  ATTGLILVPTRELAEQVQNVITTFAAFC-GKDVRSVNLTQKVSDAVQRTMLADYPDLIVS  159

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TP R+   + +  L+L  +  LV+DEAD +LS GY + IN +   IP      + +Q  +
Sbjct  160  TPSRVIANLGSSALSLENLTHLVIDEADLVLSYGYDEDINALAKAIP------RGVQTFL  213

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVV  446
             SATL + +V  L       P  + L+ +D     V   VV
Sbjct  214  MSATLTA-EVDTLKGLFCRSPVILKLEDKDDQGSGVSQFVV  253


 Score = 59.3 bits (142),  Expect = 9e-08, Method: Compositional matrix adjust.
 Identities = 25/63 (40%), Positives = 42/63 (67%), Gaps = 0/63 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F  + + P + QA+ +  +  PT +QA++IPL L G D+L  A+TGSGKT A+ +P++Q 
Sbjct  29  FESLNLDPRLRQALVKEKFTKPTLVQAKAIPLALEGKDILARAKTGSGKTAAYVLPILQT  88

Query  64  VYE  66
           + +
Sbjct  89  ILQ  91


 Score = 51.6 bits (122),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 29/44 (66%), Gaps = 0/44 (0%)

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +RGID   V  V+N  LP   ++Y HRIGR GRA + G+A+S V
Sbjct  395  SRGIDFQNVACVLNFDLPTTSKSYTHRIGRTGRAGKTGMALSFV  438


>sp|Q2HCV7|ROK1_CHAGB ATP-dependent RNA helicase ROK1 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=ROK1 PE=3 SV=1
Length=667

 Score = 66.2 bits (160),  Expect = 7e-10, Method: Compositional matrix adjust.
 Identities = 33/81 (41%), Positives = 42/81 (52%), Gaps = 0/81 (0%)

Query  533  PDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTL  592
            P + G       LH       R + + RF+ G+V  L+ TDV ARG+D  GV  V+N  +
Sbjct  464  PLEAGGSARVAVLHSSMADSARSKIMARFRAGEVWVLVTTDVLARGVDFAGVNGVVNYDV  523

Query  593  PDEKQNYVHRIGRVGRAERMG  613
            P     YVHR GR GRA R G
Sbjct  524  PTSAAAYVHRAGRTGRAGREG  544


 Score = 40.4 bits (93),  Expect = 0.057, Method: Compositional matrix adjust.
 Identities = 29/97 (30%), Positives = 44/97 (45%), Gaps = 24/97 (25%)

Query  1    MAAFSEM----GVMPEIAQAVEEMDWLLPTDIQAESIPLIL------------------G  38
            + +F E+     V P++A  +    + +PT++Q  S+PL+L                   
Sbjct  170  LTSFGELRHTYDVSPQLAANIAAQGFRVPTEVQMASLPLLLQPTTALKKSEGADIPNIDN  229

Query  39   GGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGK  75
            G D L  A TGSGKT  F IP I  V    +  +EG+
Sbjct  230  GADFLAVAPTGSGKTITFLIPAIDGVLR--RRAEEGR  264


>sp|A4RMV8|ROK1_PYRO7 ATP-dependent RNA helicase ROK1 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=ROK1 PE=3 SV=1
Length=775

 Score = 66.2 bits (160),  Expect = 7e-10, Method: Compositional matrix adjust.
 Identities = 36/91 (40%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query  533  PDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTL  592
            P   G       LH       R   + RF+  DV  LI TDV ARG+D  GV  V+N  +
Sbjct  574  PAAAGGASRVAVLHSSMPESARAAVIRRFRAADVWVLITTDVLARGVDFAGVNGVVNYDV  633

Query  593  PDEKQNYVHRIGRVGRAERM-GLAISLVATE  622
            P     YVHR GR GRA R  G+A++    E
Sbjct  634  PGSAAAYVHRAGRTGRAGRKGGIAVTFYTKE  664


 Score = 34.7 bits (78),  Expect = 4.4, Method: Compositional matrix adjust.
 Identities = 21/47 (45%), Positives = 28/47 (60%), Gaps = 4/47 (9%)

Query  340  VDIVVGTPGRLDDLVSTG----KLNLSQVRFLVLDEADGLLSQGYSD  382
             DI+V TP  L + +S G    K  L +VR L+LDEAD LL Q + +
Sbjct  398  ADILVTTPMLLLNFLSKGTSTTKKRLPRVRSLILDEADVLLDQLFRE  444


>sp|A2QA23|DBP6_ASPNC ATP-dependent RNA helicase dbp6 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=dbp6 PE=3 SV=1
Length=593

 Score = 65.9 bits (159),  Expect = 9e-10, Method: Compositional matrix adjust.
 Identities = 36/130 (28%), Positives = 66/130 (51%), Gaps = 4/130 (3%)

Query  550  KPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA  609
            K    ++ L  +++G +  +I TD A+RG+D+  + +V+N  +P     YVHR+GR  RA
Sbjct  457  KSSASRKTLTAYRRGKISVIIATDRASRGLDLRSLTHVVNYDVPASITTYVHRVGRTARA  516

Query  610  ERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCT  669
             + G A +LVA  +E  W+    ++G     TR  + G      + M+   E++      
Sbjct  517  GQKGSAWTLVA-HREGKWFASQIAKGSDGKITRSTKVGKVQFKLDNMK---EVKARYASA  572

Query  670  ISQVEPDIKV  679
            +  +E ++K 
Sbjct  573  LDLLEKEVKT  582


 Score = 50.1 bits (118),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 43/124 (35%), Positives = 65/124 (52%), Gaps = 23/124 (19%)

Query  277  VTQTKFLPNAPK--ALIVEPSRELAEQTLNNIKQFKKYID----NPKLRELLIIGGVAAR  330
            VT  K LP AP+   LIV P+REL       +KQ ++  +       LR    +G VA +
Sbjct  185  VTALKPLP-APRLRGLIVVPTREL-------VKQAREACELCAAGSGLRVASAVGNVAIK  236

Query  331  DQ--------LSVLENGVDIVVGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYS  381
            D+        +   E  VDI++ TPGRL D L  T    L  + +LV+DEAD LL++ + 
Sbjct  237  DEQRESLPGYVHRSEPNVDILICTPGRLVDHLRYTKGFTLKNLEWLVIDEADRLLNESFQ  296

Query  382  DFIN  385
            ++++
Sbjct  297  EWVD  300


 Score = 38.5 bits (88),  Expect = 0.25, Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 39/63 (62%), Gaps = 5/63 (8%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG-----GDVLMAAETGSGKTGAFSI  58
            F+++G+   + + +E+  +     +Q+  IPL+L G     GD+ ++A TGSGKT ++ +
Sbjct  123  FADLGIDSSLLRVLEDNGYREAFAVQSTVIPLLLQGPTNHPGDLCISAATGSGKTLSYVL  182

Query  59   PVI  61
            P++
Sbjct  183  PLV  185


>sp|P0CQ84|HAS1_CRYNJ ATP-dependent RNA helicase HAS1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=HAS1 PE=3 SV=1
Length=607

 Score = 65.9 bits (159),  Expect = 9e-10, Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 43/72 (60%), Gaps = 0/72 (0%)

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            LHG +K  +R      F       L+CTDVAARG+DI  V ++I    PD+ ++Y+HR+G
Sbjct  406  LHGKQKQQKRTNTFFEFINAPAGILLCTDVAARGLDIPKVDWIIQFDPPDDPRDYIHRVG  465

Query  605  RVGRAERMGLAI  616
            R  RA + G ++
Sbjct  466  RTARAGKSGKSL  477


 Score = 60.1 bits (144),  Expect = 5e-08, Method: Compositional matrix adjust.
 Identities = 28/61 (46%), Positives = 40/61 (66%), Gaps = 0/61 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS + + P    A+E M +   T++QA +IP +L G DVL AA TGSGKT AF IP +++
Sbjct  131  FSTLNLSPPTTAAIERMGFETMTEVQARTIPPLLAGKDVLGAARTGSGKTMAFLIPSVEL  190

Query  64   V  64
            +
Sbjct  191  L  191


 Score = 53.1 bits (126),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 80/169 (47%), Gaps = 8/169 (5%)

Query  277  VTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
            ++  +F P N    +I+ P+RELA Q     K+    +        +++GG   + +   
Sbjct  191  LSTLRFKPVNGTGVIIISPTRELALQIFGVAKEL---MQGHSQTFGVLMGGANRKAEADK  247

Query  336  LENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV  394
            L  GV+++V TPGR LD L +T       ++ LV+DEAD +L  G+ + + ++   +P  
Sbjct  248  LVKGVNLIVATPGRLLDHLQNTKGFVFKNLKALVIDEADRILEIGFEEEMKQIIKLLP--  305

Query  395  TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHH  443
             S+ ++  +   + T    D+ ++S +       VD   E S  D +  
Sbjct  306  -SENRQSMLFSATQTTKVTDLARISLRPGPLYINVDETKEASTADMLEQ  353


>sp|P0CQ85|HAS1_CRYNB ATP-dependent RNA helicase HAS1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=HAS1 PE=3 SV=1
Length=607

 Score = 65.9 bits (159),  Expect = 9e-10, Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 43/72 (60%), Gaps = 0/72 (0%)

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            LHG +K  +R      F       L+CTDVAARG+DI  V ++I    PD+ ++Y+HR+G
Sbjct  406  LHGKQKQQKRTNTFFEFINAPAGILLCTDVAARGLDIPKVDWIIQFDPPDDPRDYIHRVG  465

Query  605  RVGRAERMGLAI  616
            R  RA + G ++
Sbjct  466  RTARAGKSGKSL  477


 Score = 60.1 bits (144),  Expect = 5e-08, Method: Compositional matrix adjust.
 Identities = 28/61 (46%), Positives = 40/61 (66%), Gaps = 0/61 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS + + P    A+E M +   T++QA +IP +L G DVL AA TGSGKT AF IP +++
Sbjct  131  FSTLNLSPPTTAAIERMGFETMTEVQARTIPPLLAGKDVLGAARTGSGKTMAFLIPSVEL  190

Query  64   V  64
            +
Sbjct  191  L  191


 Score = 53.1 bits (126),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 80/169 (47%), Gaps = 8/169 (5%)

Query  277  VTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
            ++  +F P N    +I+ P+RELA Q     K+    +        +++GG   + +   
Sbjct  191  LSTLRFKPVNGTGVIIISPTRELALQIFGVAKEL---MQGHSQTFGVLMGGANRKAEADK  247

Query  336  LENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV  394
            L  GV+++V TPGR LD L +T       ++ LV+DEAD +L  G+ + + ++   +P  
Sbjct  248  LVKGVNLIVATPGRLLDHLQNTKGFVFKNLKALVIDEADRILEIGFEEEMKQIIKLLP--  305

Query  395  TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHH  443
             S+ ++  +   + T    D+ ++S +       VD   E S  D +  
Sbjct  306  -SENRQSMLFSATQTTKVTDLARISLRPGPLYINVDETKEASTADMLEQ  353


>sp|O13622|MS116_SCHPO ATP-dependent RNA helicase mss116, mitochondrial 
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) 
OX=284812 GN=mss116 PE=3 SV=1
Length=535

 Score = 65.5 bits (158),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 51/99 (52%), Gaps = 1/99 (1%)

Query  531  GGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINV  590
            GG  +   +  C  LH      +R+   E F+K     L  TDV ARG+D   +  V+ +
Sbjct  309  GGVLENHLKIPCFILHSGLTTAQRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQI  368

Query  591  TLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            T P    +Y+HRIGR GRA + G A  L+  E+EK + +
Sbjct  369  TGPSNTDDYIHRIGRTGRAGKTGEAY-LILLEQEKPFLN  406


 Score = 47.4 bits (111),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 60/106 (57%), Gaps = 7/106 (7%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA-ARDQLSVLENGVDIVVGTP  347
            ++I+ P+RELA Q     ++ +K      +R    IGG +  R++ ++     ++++ TP
Sbjct  115  SVILSPTRELALQIF---EEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATP  171

Query  348  GRLDDLVSTGKL--NLSQVRFLVLDEADGLLSQGYSDFINRMHNQI  391
            GRL+D +   ++  +LS   F +LDEAD L+  G+++ I  +H  +
Sbjct  172  GRLEDHLQNPRILESLSTDSF-ILDEADRLMDMGFAESILNIHEAV  216


>sp|Q8GXD6|RH49_ARATH DEAD-box ATP-dependent RNA helicase 49 OS=Arabidopsis 
thaliana OX=3702 GN=RH49 PE=2 SV=2
Length=558

 Score = 65.5 bits (158),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 58/124 (47%), Gaps = 5/124 (4%)

Query  493  KGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPH  552
            K    V  + E+K  + ++F  T   C  ++ + +     P  K   F     HG     
Sbjct  252  KSSQLVHLLIENKNKKLVVFFMT---CACVDYWGLVLSKIPTLKSISF--FSTHGKMDQK  306

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM  612
             R   L  F +     L+CTDVAARG+DI G+ YV+    P +   ++HR+GR  R ER 
Sbjct  307  GRDTALASFTEASSGVLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIHRVGRTARMERQ  366

Query  613  GLAI  616
            G AI
Sbjct  367  GRAI  370


 Score = 63.2 bits (152),  Expect = 5e-09, Method: Compositional matrix adjust.
 Identities = 35/117 (30%), Positives = 65/117 (56%), Gaps = 4/117 (3%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN-GVDI  342
            P+    +I+ P+REL+ Q     + F   +  P +  +L++GG      ++ LE  G ++
Sbjct  88   PHQVMGVIISPTRELSAQIHKVAEPFVSTL--PNVNSVLLVGGREVEADMNTLEEEGANL  145

Query  343  VVGTPGRLDDLVSTGK-LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
            ++GTPGRL D++   + L+   +  L+LDEAD LL  G+   +N + +++P+    G
Sbjct  146  LIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTG  202


 Score = 47.0 bits (110),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 25/66 (38%), Positives = 42/66 (64%), Gaps = 2/66 (3%)

Query  1   MAAFSEMG--VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSI  58
           +  FSE+   +  +I +A++   + + T +QAE+IP +    DV++ A TGSGKT AF +
Sbjct  13  LPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLL  72

Query  59  PVIQIV  64
           P I+I+
Sbjct  73  PFIEII  78


>sp|Q6CUI6|DBP9_KLULA ATP-dependent RNA helicase DBP9 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP9 PE=3 SV=1
Length=594

 Score = 65.5 bits (158),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 43/154 (28%), Positives = 81/154 (53%), Gaps = 5/154 (3%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            A   +I+ P+RELA+Q L  +++   +         L  G V+     S+L    +I++ 
Sbjct  91   ATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILIA  150

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TP +L DL+    +N+ +++FLV+DE D +L+ GY + + ++  ++P      K LQ  +
Sbjct  151  TPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPL----RKSLQTFL  206

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPD  439
             SATL+  D++ L ++    P  + L  ++   D
Sbjct  207  MSATLND-DIQHLKQQFCRSPAILKLNDDEVNKD  239


 Score = 50.8 bits (120),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 0/50 (0%)

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
             +RG+D   V  V+N  LP   ++YVHRIGR  RA + G++IS V   KE
Sbjct  381  VSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPLKE  430


 Score = 49.7 bits (117),  Expect = 9e-05, Method: Compositional matrix adjust.
 Identities = 27/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query  2   AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILG-GGDVLMAAETGSGKTGAFSIPV  60
           ++F    +   ++QA+  + +  PT IQ+ +IPL L    D++  A TGSGKT A+ IPV
Sbjct  15  SSFDSFHLDSRLSQAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPV  74

Query  61  IQIVYETLKDQQ  72
           IQ + +  K  Q
Sbjct  75  IQTILDHKKADQ  86


>sp|Q2UFL0|DBP9_ASPOR ATP-dependent RNA helicase dbp9 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp9 
PE=3 SV=1
Length=605

 Score = 65.1 bits (157),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 51/161 (32%), Positives = 79/161 (49%), Gaps = 8/161 (5%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            A   LI+ P+RELAEQ  N +  F  +     +R + +   V+   Q ++L +  D+VV 
Sbjct  101  ATTGLILVPTRELAEQVQNVVTTFAAFC-GKDVRSVNLTQKVSDAVQRTMLADYPDLVVS  159

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TP R+   + +  L+L  +  LV+DEAD +LS GY + IN +   IP      + +Q  +
Sbjct  160  TPARVVTNLGSSALSLENLTHLVIDEADLVLSYGYEEDINALAKAIP------RGVQTFL  213

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVV  446
             SATL   +V  L       P  + L+ +D     V   VV
Sbjct  214  MSATLTD-EVDTLKGLFCRSPVTLKLEDKDDQGAGVSQFVV  253


 Score = 59.3 bits (142),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 25/63 (40%), Positives = 42/63 (67%), Gaps = 0/63 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F  + + P + QA+ +  +  PT +QA++IPL L G D+L  A+TGSGKT A+ +P++Q 
Sbjct  29  FESLNLDPRLRQALIKEKFTKPTLVQAKAIPLALEGKDILARAKTGSGKTAAYVLPILQT  88

Query  64  VYE  66
           + +
Sbjct  89  ILQ  91


 Score = 51.6 bits (122),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 29/44 (66%), Gaps = 0/44 (0%)

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +RGID   V  V+N  LP   ++Y HRIGR GRA + G+A+S V
Sbjct  380  SRGIDFQNVACVLNFDLPSTSKSYTHRIGRTGRAGKTGMALSFV  423


>sp|Q6H601|RH22_ORYSJ DEAD-box ATP-dependent RNA helicase 22 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os09g0383400 PE=2 
SV=2
Length=577

 Score = 65.1 bits (157),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 38/113 (34%), Positives = 60/113 (53%), Gaps = 12/113 (11%)

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK-GD  565
            ++ ++F  T +D  N     +Q+ G P        C+  H D    ER +NL+ F++ G 
Sbjct  427  NRTMVFTNT-VDAANSVSDILQRVGVP--------CILYHRDSSLEERAKNLQSFRENGG  477

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            V  L+CTD AARG+D+  V +VI         +++HR+GR  RA + G+  SL
Sbjct  478  V--LVCTDAAARGLDVPNVSHVIQAEFAACAVDFLHRVGRTARAGQSGIVTSL  528


 Score = 48.9 bits (115),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 37/60 (62%), Gaps = 0/60 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            ++  +GV   +A A+       P+ +QA  IP +L   DV++AAETGSGKT  + +P+I+
Sbjct  83   SWESLGVSDRLASALHGAGLARPSLVQAACIPHVLTTNDVIVAAETGSGKTHGYLVPLIE  142


>sp|A6SNX1|DBP9_BOTFB ATP-dependent RNA helicase dbp9 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=dbp9 PE=3 SV=2
Length=607

 Score = 65.1 bits (157),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 68/124 (55%), Gaps = 7/124 (6%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            ALI+ P+RELA+Q    ++ F  +     +R + +   V+   Q S+L +  DIV+ TP 
Sbjct  100  ALILVPTRELADQVYKTVESFTAFCAK-DVRAVNLTQRVSDAVQRSLLADSPDIVIATPA  158

Query  349  RLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSA  408
            R     +T  L+L+ +  +V+DEAD +LS GY + +  +   +P      K +Q ++ SA
Sbjct  159  RASLNANTSALSLANLTHMVIDEADLVLSYGYDEDLQNVAKIMP------KGVQTVLMSA  212

Query  409  TLHS  412
            TL S
Sbjct  213  TLTS  216


 Score = 54.7 bits (130),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 41/61 (67%), Gaps = 0/61 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F+ +G+   + Q + + ++  PT +Q+++IPL L G D+L  A+TGSGKT A+ +P++  
Sbjct  26  FASLGLDARLLQGIAKQNFQSPTLVQSKAIPLTLEGRDILARAKTGSGKTAAYLLPILHS  85

Query  64  V  64
           +
Sbjct  86  I  86


 Score = 48.9 bits (115),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 21/44 (48%), Positives = 28/44 (64%), Gaps = 0/44 (0%)

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +RGID   V  V+N  LP   ++Y HRIGR  RA + G+A+S V
Sbjct  386  SRGIDFKNVACVLNFDLPTSSKSYTHRIGRTARAGQTGMALSFV  429


>sp|Q6C7D2|HAS1_YARLI ATP-dependent RNA helicase HAS1 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=HAS1 PE=3 
SV=1
Length=605

 Score = 65.1 bits (157),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 0/75 (0%)

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            LHG +K  +R      F       LICTDVAARG+DI  V ++I    PD+ ++Y+HR+G
Sbjct  407  LHGKQKQQKRTNTFFEFINAKQGVLICTDVAARGLDIPKVDWIIQFDPPDDPRDYIHRVG  466

Query  605  RVGRAERMGLAISLV  619
            R  R    G +I  +
Sbjct  467  RTARGSASGKSIMFL  481


 Score = 52.0 bits (123),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 26/61 (43%), Positives = 41/61 (67%), Gaps = 0/61 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS + +     Q++++M +   T +Q ++IP +L G DVL AA+TGSGKT AF IP I++
Sbjct  133  FSTIPLSENTMQSLKDMGFETMTPVQEKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEM  192

Query  64   V  64
            +
Sbjct  193  L  193


 Score = 49.3 bits (116),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 40/135 (30%), Positives = 66/135 (49%), Gaps = 11/135 (8%)

Query  277  VTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
            + + KF P N    ++V P+RELA Q     +     + N      ++IGG   R +   
Sbjct  193  LRKLKFKPRNGTGVIVVSPTRELALQIYGVARDL---MANHSQTLGIVIGGNNRRQEEEK  249

Query  336  LENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV  394
            L  GV+++V TPGR LD L ++       ++ L++DEAD +L  G+   +  +   +P  
Sbjct  250  LNKGVNLLVCTPGRLLDHLQNSQGFVFKNLKALIIDEADRILEIGFEQEMKEIIKILP--  307

Query  395  TSDGKRLQVIVCSAT  409
                K  Q ++ SAT
Sbjct  308  ----KERQSMLFSAT  318


>sp|P26802|DDX51_DROME Probable ATP-dependent RNA helicase Dbp73D 
OS=Drosophila melanogaster OX=7227 GN=Dbp73D PE=2 SV=3
Length=687

 Score = 65.1 bits (157),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 48/93 (52%), Gaps = 0/93 (0%)

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            L G+     R + L  F  G +  LIC+D  ARGID+  V  V++   P     Y+HR+G
Sbjct  478  LSGNLSAKVRNERLRDFAAGKINGLICSDALARGIDVADVDVVLSYETPRHITTYIHRVG  537

Query  605  RVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
            R  RA R G A++++  +   ++  + S   KG
Sbjct  538  RTARAGRKGTAVTVLTEQDMTLFKKILSDANKG  570


 Score = 42.7 bits (99),  Expect = 0.014, Method: Compositional matrix adjust.
 Identities = 21/59 (36%), Positives = 36/59 (61%), Gaps = 1/59 (2%)

Query  338  NGVDIVVGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
            +  DIVV TPGRL D L +T    L  ++FLV+DEAD ++   + +++  + + + + T
Sbjct  272  SKADIVVTTPGRLVDHLHATKGFCLKSLKFLVIDEADRIMDAVFQNWLYHLDSHVKETT  330


 Score = 37.7 bits (86),  Expect = 0.39, Method: Compositional matrix adjust.
 Identities = 21/59 (36%), Positives = 34/59 (58%), Gaps = 9/59 (15%)

Query  15   QAVEEMDWLLPTDIQAESIPLILGG---------GDVLMAAETGSGKTGAFSIPVIQIV  64
            QA+++M       +Q + IP IL            D+ ++A TGSGKT AF+IP++Q++
Sbjct  150  QALKQMKIKRLFPVQKQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLL  208


>sp|Q4X0C2|DBP9_ASPFU ATP-dependent RNA helicase dbp9 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=dbp9 PE=3 SV=1
Length=649

 Score = 64.7 bits (156),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 44/127 (35%), Positives = 69/127 (54%), Gaps = 7/127 (6%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            A   LI+ P+RELAEQ  + I +F  +     +R + +   V+   Q ++L +  D++V 
Sbjct  131  ATTGLILVPTRELAEQVQSVIIKFSAFC-GKDVRSVNLTQKVSDAVQRTMLADYPDLIVS  189

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TP R+   + T  L+L  +  LV+DEAD +LS GY + IN +   IP      + +Q  +
Sbjct  190  TPARVIANLGTSALSLENLTHLVIDEADLVLSYGYDEDINALAKAIP------RGVQTFL  243

Query  406  CSATLHS  412
             SATL S
Sbjct  244  MSATLTS  250


 Score = 58.5 bits (140),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 42/63 (67%), Gaps = 0/63 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F  + + P + QA+ +  +  PT +Q+++IPL L G D+L  A+TGSGKT A+ +P++Q 
Sbjct  59   FESLNLDPRLRQALIKEQFTKPTPVQSKAIPLALEGKDILARAKTGSGKTAAYVLPILQT  118

Query  64   VYE  66
            + +
Sbjct  119  ILQ  121


 Score = 51.2 bits (121),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 29/44 (66%), Gaps = 0/44 (0%)

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +RGID   V  V+N  LP   ++Y HRIGR GRA + G+A+S V
Sbjct  425  SRGIDFQNVACVLNFDLPTTSKSYTHRIGRTGRAGKAGMALSFV  468


>sp|P0CR08|SPB4_CRYNJ ATP-dependent rRNA helicase SPB4 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=SPB4 PE=3 SV=1
Length=748

 Score = 64.7 bits (156),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 123/299 (41%), Gaps = 57/299 (19%)

Query  342  IVVGTPGRLDDLVSTGK----LNLSQVRFLVLDEADGLLSQ-GYSDFINRMHNQIPQVTS  396
            I++GTPGRL   +   +    + +S++  LVLDEAD LLS   +   + R+   +P    
Sbjct  175  ILIGTPGRLAAFLLNPRGLAIVRVSELDVLVLDEADRLLSSPDHRRDVERIMRHLP----  230

Query  397  DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-----HHVVVPVNPK  451
              K+ +  + SAT+                        D+V + +     + V + VN K
Sbjct  231  --KQRRTHLFSATM-----------------------TDAVEEMIGLGLRNPVRIVVNLK  265

Query  452  TDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAII  511
              R   + G+         A  NT       E   + I++L  E       +H+  + I+
Sbjct  266  DKR---KDGEEPKERRTPMALQNTYLVCRHAEKTLQLIRLLLCEST-----KHERSKFIV  317

Query  512  FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR----  567
            +  T   C  ++ ++      P     +F     HG+  P  R+  L  F          
Sbjct  318  YFST---CAAVDYFYRILSRLPSLS--KFHLTSFHGELPPKIRETALSTFTSHPSSHLSP  372

Query  568  -FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
              L+CTDVAARG+D   +  VI    P + + + HR GR  RA R G A+ L+   +E+
Sbjct  373  AVLLCTDVAARGVDFLDIDVVIQYDAPTDPKTFSHRAGRTARAGRRGKAVVLLGKGREE  431


 Score = 39.7 bits (91),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 31/52 (60%), Gaps = 0/52 (0%)

Query  11  PEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           P I   +  M +   T +QA +IP  +   D ++ A TGSGKT AF+IPV++
Sbjct  24  PWILDVINSMGFKNMTPVQAGTIPRAVKNQDCVVEAVTGSGKTLAFTIPVLE  75


>sp|P0CR09|SPB4_CRYNB ATP-dependent rRNA helicase SPB4 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=SPB4 PE=3 SV=1
Length=748

 Score = 64.7 bits (156),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 123/299 (41%), Gaps = 57/299 (19%)

Query  342  IVVGTPGRLDDLVSTGK----LNLSQVRFLVLDEADGLLSQ-GYSDFINRMHNQIPQVTS  396
            I++GTPGRL   +   +    + +S++  LVLDEAD LLS   +   + R+   +P    
Sbjct  175  ILIGTPGRLAAFLLNPRGLAIVRVSELDVLVLDEADRLLSSPDHRRDVERIMRHLP----  230

Query  397  DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-----HHVVVPVNPK  451
              K+ +  + SAT+                        D+V + +     + V + VN K
Sbjct  231  --KQRRTHLFSATM-----------------------TDAVEEMIGLGLRNPVRIVVNLK  265

Query  452  TDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAII  511
              R   + G+         A  NT       E   + I++L  E       +H+  + I+
Sbjct  266  DKR---KDGEEPKERRTPMALQNTYLVCRHAEKTLQLIRLLLCEST-----KHERSKFIV  317

Query  512  FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR----  567
            +  T   C  ++ ++      P     +F     HG+  P  R+  L  F          
Sbjct  318  YFST---CAAVDYFYRILSRLPSLS--KFHLTSFHGELPPKIRETALSTFTSHPSSHLSP  372

Query  568  -FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
              L+CTDVAARG+D   +  VI    P + + + HR GR  RA R G A+ L+   +E+
Sbjct  373  AVLLCTDVAARGVDFLDIDVVIQYDAPTDPKTFSHRAGRTARAGRRGKAVVLLGKGREE  431


 Score = 39.7 bits (91),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 31/52 (60%), Gaps = 0/52 (0%)

Query  11  PEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           P I   +  M +   T +QA +IP  +   D ++ A TGSGKT AF+IPV++
Sbjct  24  PWILDVINSMGFKNMTPVQAGTIPRAVKNQDCVVEAVTGSGKTLAFTIPVLE  75


>sp|Q4HVW2|SPB4_GIBZE ATP-dependent rRNA helicase SPB4 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=SPB4 PE=3 SV=1
Length=637

 Score = 64.3 bits (155),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query  540  FSCVCLHGDRKPHERKQNLERFKKG-DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQN  598
            F+ V LHG      R++N  +F        L+ TD+AARG+DI  V  V+ +  P + + 
Sbjct  323  FALVPLHGKHAAKVREKNFNKFLSSVSPTILLTTDLAARGLDIPQVDLVVQIDAPSDPKV  382

Query  599  YVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            ++HR GR GRA R GLA+ ++   +E+ +      R
Sbjct  383  FIHRSGRAGRAGRKGLAVVMLHPGREEDYVQFLEIR  418


 Score = 51.6 bits (122),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 65/134 (49%), Gaps = 24/134 (18%)

Query  289  ALIVEPSRELAEQ---TLNNIKQF-----------------KKYIDNPKLRELLIIGGVA  328
            A+IV P+RELA Q    L  + QF                 + +   P +   L++GG  
Sbjct  90   AIIVSPTRELAAQIHTVLMKLLQFHEASAEILPHLKDDDEKRPFTTVPAIVPQLLVGGTT  149

Query  329  A--RDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRF--LVLDEADGLLSQGYSDFI  384
               +D    L +  ++++ +PGRL +L+S+  ++  Q  F  LVLDEAD LL  G+   +
Sbjct  150  TTVQDLRFFLRHSPNVLISSPGRLVELMSSPHVHCPQSSFEVLVLDEADRLLDLGFKPDL  209

Query  385  NRMHNQIPQVTSDG  398
             ++ + +P+    G
Sbjct  210  QKILSHLPKQRRTG  223


 Score = 44.3 bits (103),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 0/50 (0%)

Query  13  IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           I  AV  M +   T +QA ++P  +G  DV++ A TGSGKT AF IP++Q
Sbjct  25  IRDAVATMGFDQMTPVQAATLPHFMGNKDVVVEAVTGSGKTLAFLIPLVQ  74


>sp|Q7SFC8|ROK1_NEUCR ATP-dependent RNA helicase rok1 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=drh-16 PE=3 SV=1
Length=781

 Score = 64.7 bits (156),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 34/81 (42%), Positives = 42/81 (52%), Gaps = 0/81 (0%)

Query  533  PDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTL  592
            P + G       LH       R + + RF+ G+V  LI TDV ARG+D  GV  V+N  +
Sbjct  570  PLEAGGSARVAVLHSSLPDSVRSKIMARFRSGEVWVLITTDVLARGVDFAGVNGVVNYDV  629

Query  593  PDEKQNYVHRIGRVGRAERMG  613
            P     YVHR GR GRA R G
Sbjct  630  PVSAAAYVHRAGRTGRAGREG  650


 Score = 35.8 bits (81),  Expect = 1.6, Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 22/86 (26%)

Query  1    MAAFSEM----GVMPEIAQAVEEMDWLLPTDIQAESIPLIL------------------G  38
            + +F E+    G+ P +A  +    + +PT++Q  S+PL L                   
Sbjct  179  LNSFGELKYTYGIHPVLADNITRQGFRVPTEVQMGSLPLQLRPEMALEKATDVEDVKVEK  238

Query  39   GGDVLMAAETGSGKTGAFSIPVIQIV  64
            G D L  A TGSGKT +F IP I  +
Sbjct  239  GIDFLGVAPTGSGKTISFLIPAIDAI  264


>sp|A1DHV3|DBP9_NEOFI ATP-dependent RNA helicase dbp9 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp9 
PE=3 SV=1
Length=619

 Score = 64.3 bits (155),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 43/127 (34%), Positives = 69/127 (54%), Gaps = 7/127 (6%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            A   L++ P+RELAEQ  + I +F  +     +R + +   V+   Q ++L +  D++V 
Sbjct  101  ATTGLVLVPTRELAEQVQSVIIKFSAFC-GKDVRSVNLTQKVSDAVQRTMLADYPDLIVS  159

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TP R+   + T  L+L  +  LV+DEAD +LS GY + IN +   IP      + +Q  +
Sbjct  160  TPARVIANLGTSALSLEHLTHLVIDEADLVLSYGYDEDINALAKAIP------RGVQTFL  213

Query  406  CSATLHS  412
             SATL S
Sbjct  214  MSATLTS  220


 Score = 58.2 bits (139),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 0/63 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F  + + P + QA+    +  PT +Q+++IPL L G D+L  A+TGSGKT A+ +P++Q 
Sbjct  29  FESLNLDPRLRQALIREQFTKPTPVQSKAIPLALEGKDILARAKTGSGKTAAYVLPILQT  88

Query  64  VYE  66
           + +
Sbjct  89  ILQ  91


 Score = 51.6 bits (122),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 23/49 (47%), Positives = 30/49 (61%), Gaps = 0/49 (0%)

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            +RGID   V  V+N  LP   ++Y HRIGR GRA + G+A+S V    E
Sbjct  395  SRGIDFQNVACVLNFDLPTTSKSYTHRIGRTGRAGKAGMALSFVVPADE  443


>sp|Q75AE1|ROK1_EREGS ATP-dependent RNA helicase ROK1 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=ROK1 PE=3 SV=1
Length=569

 Score = 64.3 bits (155),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 38/58 (66%), Gaps = 0/58 (0%)

Query  544  CLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH  601
             +H +R   +R++ +ERFK GD+  LICTDV ARGID  G+  VIN  +P   Q YVH
Sbjct  403  VIHAERTQVQREKIIERFKSGDLWCLICTDVLARGIDFKGINLVINYDVPRSAQAYVH  460


 Score = 62.4 bits (150),  Expect = 9e-09, Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 85/161 (53%), Gaps = 16/161 (10%)

Query  276  QVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLREL---LIIGGVAAR--  330
            QV   K +    K LI+ P++ELA Q  +   +  + I   K R L   L+   +AA+  
Sbjct  184  QVISDKAVGTGVKGLIISPTKELANQIFDECSKLAQRIFLEKKRPLSVALLSKSLAAKLK  243

Query  331  DQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ  390
            +Q+ V +   DI++ TP RL D+V +  L+LS V++L+ DEAD L  + + +  + + + 
Sbjct  244  NQI-VSDKKYDIIISTPLRLIDIVKSESLDLSAVKYLIFDEADKLFDKTFVEQTDDILSA  302

Query  391  I--PQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWV  429
               P ++        ++ SATL S  V++L++ IM  P  V
Sbjct  303  CSHPNISK-------VLFSATLPS-SVEELAQSIMTDPVRV  335


 Score = 47.0 bits (110),  Expect = 7e-04, Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 31/46 (67%), Gaps = 0/46 (0%)

Query  19   EMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIV  64
            E ++  PT IQ E+IP+ L   D++  A TGSGKT AF IP++Q V
Sbjct  140  ENNFTEPTPIQCEAIPISLQNRDIVACAPTGSGKTLAFLIPLLQQV  185


>sp|A6R2L6|DBP9_AJECN ATP-dependent RNA helicase DBP9 OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=DBP9 PE=3 
SV=1
Length=625

 Score = 64.3 bits (155),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 0/64 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +F  + + P + QA+ +  +  PT IQAE+IPL L G DVL  A+TGSGKT A+ +PV+Q
Sbjct  25  SFETLKLDPRLLQALTQQKFTKPTPIQAEAIPLALDGKDVLARAKTGSGKTAAYLLPVLQ  84

Query  63  IVYE  66
            + +
Sbjct  85  SILQ  88


 Score = 61.2 bits (147),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 42/124 (34%), Positives = 65/124 (52%), Gaps = 7/124 (6%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            ALI+ P+RELAEQ       F  +     +R + +   V+   Q S+L +  DIVV TP 
Sbjct  101  ALILVPTRELAEQVHRTAISFSAF-SGKHVRSVNLTQKVSDAVQRSLLADLPDIVVSTPA  159

Query  349  RLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSA  408
            R    V++  L+L ++  LV+DEAD +LS GY + +  +   +P      + +Q  + SA
Sbjct  160  RAVANVNSSALSLERLTHLVIDEADLVLSYGYEEDMQSLAKAVP------RGVQTFLMSA  213

Query  409  TLHS  412
            T  S
Sbjct  214  TFTS  217


 Score = 51.2 bits (121),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 29/44 (66%), Gaps = 0/44 (0%)

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +RGID   V  V+N  LP   ++Y HRIGR GRA + G+A+S V
Sbjct  396  SRGIDFQNVACVLNFDLPTTSKSYTHRIGRTGRAGKTGMALSFV  439


>sp|Q8TFL3|DBP7_CANGA ATP-dependent RNA helicase DBP7 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP7 PE=3 SV=1
Length=715

 Score = 63.9 bits (154),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 56/183 (31%), Positives = 91/183 (50%), Gaps = 25/183 (14%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDN--PKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            ALI+ P+RELA Q    I      + N    L   L+IGG   + + + L  G + ++GT
Sbjct  206  ALIIAPTRELASQ----IYHVTTMLANCCHYLVPCLLIGGERKKSEKARLRKGCNFIIGT  261

Query  347  PGRLDDLVSTGKL----NLSQVRFLVLDEADGLLSQGYSDFINRMH---NQIPQVTSD--  397
            PGR+ D     K+      S +R++VLDE D L+  G+ + IN++    N +  +T    
Sbjct  262  PGRILDHFQNTKVIKEQMQSSLRYVVLDEGDKLMELGFEETINQIMEIVNSMDVITRKYP  321

Query  398  --GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED-------SVPDTVHHVVVPV  448
                R+  ++CSAT ++ +V KLS++ +     + + G+        SVPD +   VV  
Sbjct  322  KLPNRIVHLLCSATKNN-EVAKLSKRSLDNYKVISIGGKKDTMMDNTSVPDQLLQKVVIA  380

Query  449  NPK  451
             PK
Sbjct  381  PPK  383


 Score = 55.8 bits (133),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 32/81 (40%), Positives = 41/81 (51%), Gaps = 6/81 (7%)

Query  542  CVCLHGDRKPHERKQNLERF------KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDE  595
            C  LHG      R   L+ F       KG    L CTDVA+RG+D+  V  VI    P  
Sbjct  465  CYKLHGSLSQQMRTMTLKHFATDSEQTKGKHLILFCTDVASRGLDLPDVSTVIEFDPPFA  524

Query  596  KQNYVHRIGRVGRAERMGLAI  616
             ++++HRIGR  RA R G A+
Sbjct  525  VEDHLHRIGRTARAGRSGEAL  545


>sp|Q54VF1|DDX56_DICDI Probable ATP-dependent RNA helicase ddx56 
OS=Dictyostelium discoideum OX=44689 GN=ddx56 PE=3 SV=1
Length=685

 Score = 63.9 bits (154),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 43/62 (69%), Gaps = 0/62 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  MG+   I +A+++M +  P+ +Q++SIPL L G D+L  A TGSGKT A+SIP+IQ
Sbjct  24  TFESMGLDNRILRALKKMGFQNPSLVQSKSIPLSLQGKDILAKARTGSGKTAAYSIPIIQ  83

Query  63  IV  64
            V
Sbjct  84  KV  85


 Score = 60.8 bits (146),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 27/68 (40%), Positives = 36/68 (53%), Gaps = 0/68 (0%)

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
             ARGID   V  V+N   P   +NY+HRIGR  R    G+A+S V    E++   V  +R
Sbjct  427  VARGIDFRNVDIVVNFDFPRTIKNYIHRIGRTARGTNKGIALSFVTYHNEELLKKVSKTR  486

Query  635  GKGCYNTR  642
            G   YN +
Sbjct  487  GDAGYNLK  494


 Score = 59.7 bits (143),  Expect = 8e-08, Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 84/152 (55%), Gaps = 11/152 (7%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARD-QLSVLENGVDIVVGT  346
            KA+++ P+REL EQ  N+  Q   Y    +L  ++ +G     D Q  +L +  D++V T
Sbjct  98   KAVVLVPTRELCEQVKNHFNQVSYYCQ--QLVSVVQLGNDKTLDEQKGLLRDIPDVIVST  155

Query  347  PGRLDDLVSTGKLNL-SQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            P RL   +    + L S +  LV+DEAD +L+ G+ + IN + + +P+V       Q  +
Sbjct  156  PTRLVQHLENKTIQLQSTLDILVIDEADLVLNYGHQNDINIIKSFLPKVC------QCFL  209

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSV  437
             SATL + +V++L + ++H P  + L+ + ++
Sbjct  210  MSATL-TKEVEELKKLVLHTPAVLKLEEDKAI  240


>sp|O60080|DBP9_SCHPO ATP-dependent RNA helicase dbp9 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp9 
PE=3 SV=1
Length=595

 Score = 63.9 bits (154),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 85/157 (54%), Gaps = 8/157 (5%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            AL++ P+RELA+Q  N +++   +     +R + +    +   Q  +L +  DIV+ TP 
Sbjct  91   ALLLVPTRELAQQVYNVLEKLTAFCSK-HIRFINVATNSSDTVQRPLLLDLPDIVIATPS  149

Query  349  RLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSA  408
            R    V++G L L +++FLV+DEAD +LS GY++ +  +   +P+ T      Q  + SA
Sbjct  150  RCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRGT------QSFLMSA  203

Query  409  TLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
            TL S ++  L + +   P  + +K +++      +VV
Sbjct  204  TL-SKNIASLQKLVCRNPFILAVKDKEASGKLTQYVV  239


 Score = 60.5 bits (145),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 29/77 (38%), Positives = 51/77 (66%), Gaps = 5/77 (6%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            FS+  + P + +A+ + ++  PT +Q+E+IPL L G D++  A TGSGKT A+ IP+++
Sbjct  15  TFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILE  74

Query  63  IVYETLKDQQ--EGKKG  77
           ++   LK +Q  E ++G
Sbjct  75  LL---LKQKQIDENQRG  88


 Score = 48.9 bits (115),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 0/50 (0%)

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
             ARG+D   V  V+N  +P   ++Y+HRIGR  RA + G A+S V  + E
Sbjct  386  VARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSFVVPKSE  435


>sp|Q6BLM5|DBP9_DEBHA ATP-dependent RNA helicase DBP9 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP9 PE=3 SV=1
Length=586

 Score = 63.5 bits (153),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 83/153 (54%), Gaps = 10/153 (7%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            K++I+ P+REL+ Q    +++   +  N K+R + I   ++ +   S+L N  +I+V TP
Sbjct  95   KSIILVPTRELSNQVSQFLEKLLIFC-NSKIRLINISSNLSDQVINSLLINKPEIIVSTP  153

Query  348  GRLDDL----VSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
             +L  +    V++  +NLS V+ L +DE D +LS GY + + ++ + +P      K LQ 
Sbjct  154  AKLIQILEKNVNSNLINLSTVKNLTIDEVDLVLSYGYLEDLQKLESYLPI----KKNLQT  209

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDS  436
             + SAT++  D+  +  K    P  + L  EDS
Sbjct  210  FLMSATIND-DLNDIKSKFCSRPAILKLNDEDS  241


 Score = 52.8 bits (125),  Expect = 9e-06, Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 47/76 (62%), Gaps = 4/76 (5%)

Query  7   MGVMPEIAQAVEEMDWLLPTDIQAESIPL-ILGGGDVLMAAETGSGKTGAFSIPVIQIVY  65
            G+   + QA++++ +  PT IQ+ +IPL I    D++  A TGSGKT A+SIP+IQ   
Sbjct  26  FGLDARLLQAIDQLGFENPTLIQSSAIPLAIEEKRDIIAKASTGSGKTAAYSIPIIQ---  82

Query  66  ETLKDQQEGKKGKTTI  81
             L+D+   ++ K+ I
Sbjct  83  NLLQDESTEREIKSII  98


 Score = 49.3 bits (116),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 0/45 (0%)

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
             +RG+D   V  V+N  LP   ++Y+HR+GR  RA + G+A+S V
Sbjct  377  VSRGVDFRNVACVLNFDLPTSSKSYIHRVGRTARAGKSGMALSFV  421


>sp|Q09916|HAS1_SCHPO ATP-dependent RNA helicase has1 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=has1 
PE=1 SV=1
Length=578

 Score = 63.5 bits (153),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 44/62 (71%), Gaps = 0/62 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS++ +   I +A++EM +   T+IQ  SIP +L G DVL AA+TGSGKT AF IP I++
Sbjct  91   FSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEM  150

Query  64   VY  65
            +Y
Sbjct  151  LY  152


 Score = 62.4 bits (150),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 73/143 (51%), Gaps = 8/143 (6%)

Query  281  KFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
            KF P N    +I+ P+RELA Q     K+  KY         ++IGG   R +   L  G
Sbjct  155  KFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQT---FGIVIGGANRRAEADKLVKG  211

Query  340  VDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
            V+++V TPGR LD L +T       +R LV+DEAD +L  G+ D + ++   +P   S+ 
Sbjct  212  VNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILP---SEN  268

Query  399  KRLQVIVCSATLHSFDVKKLSEK  421
            ++  +   + T    D+ ++S K
Sbjct  269  RQTLLFSATQTTKVEDLARISLK  291


 Score = 60.5 bits (145),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 0/67 (0%)

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            LHG +K   R      F   +   L+CT+VAARG+DI  V +++    PD+ ++Y+HR+G
Sbjct  366  LHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVG  425

Query  605  RVGRAER  611
            R  R  +
Sbjct  426  RTARGTK  432


>sp|A7EM78|DBP9_SCLS1 ATP-dependent RNA helicase dbp9 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=dbp9 PE=3 SV=1
Length=607

 Score = 63.5 bits (153),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 7/124 (6%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            ALI+ P+RELA+Q    ++ F  +     +R + +   V+   Q S+L +  DIV+ TP 
Sbjct  100  ALILVPTRELADQVYKTVESFTAFCAK-DVRAVNLTQRVSDAVQRSLLADSPDIVIATPA  158

Query  349  RLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSA  408
            R     +T  L L+ +  +V+DEAD +LS GY + +  +   +P      K +Q ++ SA
Sbjct  159  RASLNANTSALLLTNLTHMVIDEADLVLSYGYDEDLQNVAKIMP------KGVQTVLMSA  212

Query  409  TLHS  412
            TL S
Sbjct  213  TLTS  216


 Score = 55.8 bits (133),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 23/63 (37%), Positives = 42/63 (67%), Gaps = 0/63 (0%)

Query  2   AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
           A F+ +G+   + Q + + ++  PT +Q+++IPL L G D+L  A+TGSGKT A+ +P++
Sbjct  24  ATFASLGLDARLLQGIAKQNFQSPTLVQSKAIPLTLEGRDILARAKTGSGKTAAYLLPIL  83

Query  62  QIV  64
             +
Sbjct  84  HSI  86


 Score = 48.9 bits (115),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 21/44 (48%), Positives = 28/44 (64%), Gaps = 0/44 (0%)

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +RGID   V  V+N  LP   ++Y HRIGR  RA + G+A+S V
Sbjct  386  SRGIDFKNVACVLNFDLPTSSKSYTHRIGRTARAGQTGMALSFV  429


>sp|A2QCW6|DBP9_ASPNC ATP-dependent RNA helicase dbp9 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=dbp9 PE=3 SV=1
Length=616

 Score = 63.5 bits (153),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 43/127 (34%), Positives = 66/127 (52%), Gaps = 7/127 (6%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            A   LI+ P+RELAEQ    +  F  +     +R + +   V+   Q ++L +  DIV+ 
Sbjct  101  ATTGLILVPTRELAEQVQKVVTTFAAFC-GKDVRSVNLTQKVSEAVQRTMLSDYPDIVIS  159

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TP R+   +    L+L  +  LV+DEAD +LS GY + IN +   IP      + +Q  +
Sbjct  160  TPARVIANLGNSSLSLDNLTHLVIDEADLVLSYGYDEDINALSKAIP------RGVQTFL  213

Query  406  CSATLHS  412
             SATL S
Sbjct  214  MSATLTS  220


 Score = 61.6 bits (148),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 0/65 (0%)

Query  2   AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
           A F  + + P + QA+ +  +  PT +QA++IPL L G D+L  A+TGSGKT A+ +P++
Sbjct  27  ADFESLNLDPRLRQALIKEKFTKPTPVQAKAIPLALAGKDILARAKTGSGKTAAYVLPIL  86

Query  62  QIVYE  66
           Q + +
Sbjct  87  QTILQ  91


 Score = 34.7 bits (78),  Expect = 3.7, Method: Compositional matrix adjust.
 Identities = 21/44 (48%), Positives = 28/44 (64%), Gaps = 0/44 (0%)

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +RGID   V  V+N  LP   ++Y HRIGR GR  + G+A+S V
Sbjct  392  SRGIDFQNVACVLNFDLPTTAKSYTHRIGRTGRGGKTGMALSFV  435


>sp|Q5BGX6|DBP7_EMENI ATP-dependent RNA helicase dbp7 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=dbp7 PE=3 SV=1
Length=778

 Score = 63.9 bits (154),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 92/182 (51%), Gaps = 36/182 (20%)

Query  289  ALIVEPSRELAEQ---TLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            A+I+ P+REL +Q    L  + +   +I         +IGG   + + + L  G++I+V 
Sbjct  241  AIILAPTRELCKQISVVLEGLLRCAHWIVAG-----TVIGGEKKKSEKARLRKGLNILVA  295

Query  346  TPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGY----SDFINRMH-----NQIPQVT  395
            TPGRL D L +T  L++S VR+LVLDE D L+  G+     + I+++      ++IP V 
Sbjct  296  TPGRLADHLENTQALDVSNVRWLVLDEGDRLMELGFEKELQEIISKLDARQRPSRIPGVP  355

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL  455
            +   +   I+CSATL   +V+KL              GE S+ D VH    P +   ++ 
Sbjct  356  A---KRATILCSATL-KMNVQKL--------------GEISLKDAVHIKADPADEDGEKT  397

Query  456  WE  457
             E
Sbjct  398  AE  399


 Score = 53.5 bits (127),  Expect = 6e-06, Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 37/73 (51%), Gaps = 1/73 (1%)

Query  545  LHGDRKPHERKQNLERFKKG-DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI  603
            LHG    H R   L  F K  D   LICTDVA+RG+D+  V  V+          ++HRI
Sbjct  519  LHGSLPQHVRTSTLSSFAKNRDPSVLICTDVASRGLDLPNVDLVVEYDPAFSADEHLHRI  578

Query  604  GRVGRAERMGLAI  616
            GR  R  R G A+
Sbjct  579  GRTARLGRDGRAL  591


 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 28/81 (35%), Positives = 47/81 (58%), Gaps = 3/81 (4%)

Query  4    FSEMGVMPEIA-QAVEEMDWLLPTDIQAESIPLILGG-GDVLMAAETGSGKTGAFSIPVI  61
            F+ +G+ P +A   + +++   PT IQ  SI  +L    D  + AETGSGKT A+ +P++
Sbjct  153  FTNLGLSPTLAAHLLTKLELKAPTAIQKASITQLLKEETDAFIQAETGSGKTLAYLLPLV  212

Query  62   QIVYETLKDQQEG-KKGKTTI  81
            Q +    + + EG  KG T++
Sbjct  213  QRIMALSRAKNEGDAKGDTSV  233


>sp|Q754J2|DBP7_EREGS ATP-dependent RNA helicase DBP7 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DBP7 PE=3 SV=1
Length=710

 Score = 63.5 bits (153),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 85/181 (47%), Gaps = 24/181 (13%)

Query  289  ALIVEPSRELAEQ---TLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            A+IV P+RELA Q    ++ + Q   Y     L   L++GG   + + + L  G + +VG
Sbjct  213  AMIVTPTRELAAQIYGVISTLAQCCHY-----LVPCLLVGGERKKSEKARLRKGANFIVG  267

Query  346  TPGRLDDLVSTGKLNLSQ----VRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG---  398
            TPGR+ D +   K+   Q    +R+L+LDE D L+  G+ + +  +   +  V  D    
Sbjct  268  TPGRMLDHLQNTKVAREQLPHSLRYLILDEGDKLMELGFEETLKSILEIVHSVACDNTRF  327

Query  399  ----KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE----DSVPDTVHHVVVPVNP  450
                +R+  ++CSAT     V KL +  +  P  +          +VPD +   +  V P
Sbjct  328  PRLPQRIVHVLCSATRQG-TVSKLGDIALTDPKVIAASDSTTDVSTVPDQLLQKIAIVPP  386

Query  451  K  451
            K
Sbjct  387  K  387


 Score = 49.3 bits (116),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 51/109 (47%), Gaps = 7/109 (6%)

Query  545  LHGDRKPHERKQNLERFK------KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQN  598
            LHG      R   L  F       +G    L CTDVA+RG+D+  V  VI +  P   ++
Sbjct  470  LHGSLPQAVRVATLRHFSSDAAATRGKHLVLFCTDVASRGLDLPRVSTVIEMDPPFAVED  529

Query  599  YVHRIGRVGRAERMGLAIS-LVATEKEKVWYHVCSSRGKGCYNTRLKED  646
            ++HRIGR  RA   G ++  L+  E+E    H+ +   +G    R   D
Sbjct  530  HLHRIGRTARAGVAGESLLFLLPGEEEGYMEHIRAHHPRGWELLRYDRD  578


 Score = 43.1 bits (100),  Expect = 0.009, Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 29/41 (71%), Gaps = 1/41 (2%)

Query  25   PTDIQAESIPLILGG-GDVLMAAETGSGKTGAFSIPVIQIV  64
            PT IQ  +IP +L G  D+ + A+TGSGKT AF +PV+Q +
Sbjct  158  PTKIQKMAIPEVLNGKADLFLHAQTGSGKTLAFLLPVLQTL  198


>sp|Q6CSW1|ROK1_KLULA ATP-dependent RNA helicase ROK1 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=ROK1 PE=3 SV=1
Length=579

 Score = 63.5 bits (153),  Expect = 5e-09, Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 37/58 (64%), Gaps = 0/58 (0%)

Query  544  CLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH  601
             +H +R   +R + +ERFK GD+  LICTDV ARG+D  GV  VIN  +P   Q YVH
Sbjct  412  VIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVH  469


 Score = 50.1 bits (118),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 42/146 (29%), Positives = 71/146 (49%), Gaps = 10/146 (7%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLS----VLENGVDIV  343
            K LI+ P++ELA Q      +    I   K R L +     +         + E+  DI+
Sbjct  205  KGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVALLSKSLSSKLKNKVISEDKYDII  264

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            + TP RL  +V    LNL +V+ L+ DEAD L  +    F+ +  + +   T     L+ 
Sbjct  265  ISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKT---FVEQTDDILSSCTD--PHLRK  319

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWV  429
             + SAT+ S +V+++++ IM+ P  V
Sbjct  320  TMFSATIPS-NVEEIAQTIMNDPIRV  344


 Score = 48.9 bits (115),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 32/44 (73%), Gaps = 0/44 (0%)

Query  19   EMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            E ++  PT IQ+ESIP++L   D++  A TGSGKT AF IP++Q
Sbjct  150  ENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQ  193


>sp|A1C7F7|DBP9_ASPCL ATP-dependent RNA helicase dbp9 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp9 PE=3 SV=1
Length=621

 Score = 63.2 bits (152),  Expect = 5e-09, Method: Compositional matrix adjust.
 Identities = 43/127 (34%), Positives = 68/127 (54%), Gaps = 7/127 (6%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            A   LI+ P+RELAEQ  + I +F  +     +R + +   V+   Q ++L +  D++V 
Sbjct  101  ATTGLILVPTRELAEQVQSVITKFTAFC-GKDVRSVNLTQKVSDAVQRTMLADYPDLIVS  159

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TP R+   + +  L L  +  LV+DEAD +LS GY + IN +   IP      + +Q  +
Sbjct  160  TPARVIANLGSSALALDNLTHLVIDEADLVLSYGYDEDINALAKAIP------RGVQTFL  213

Query  406  CSATLHS  412
             SATL S
Sbjct  214  MSATLTS  220


 Score = 58.5 bits (140),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 42/63 (67%), Gaps = 0/63 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F  + + P + QA+ +  +  PT +Q+++IPL L G D+L  A+TGSGKT A+ +P++Q 
Sbjct  29  FENLNLDPRLRQALIKEQFTKPTPVQSKAIPLALEGKDILARAKTGSGKTAAYVLPILQT  88

Query  64  VYE  66
           + +
Sbjct  89  ILQ  91


 Score = 51.6 bits (122),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 23/49 (47%), Positives = 30/49 (61%), Gaps = 0/49 (0%)

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            +RGID   V  V+N  LP   ++Y HRIGR GRA + G+A+S V    E
Sbjct  397  SRGIDFQNVACVLNFDLPTTSKSYTHRIGRTGRAGKAGMALSFVVPADE  445


>sp|A5DK47|DBP6_PICGU ATP-dependent RNA helicase DBP6 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP6 PE=3 
SV=2
Length=631

 Score = 63.2 bits (152),  Expect = 5e-09, Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 44/75 (59%), Gaps = 0/75 (0%)

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
            R + L+ F    V  L+ TD+ ARGIDI  +  VIN  LP+  ++YVHR+GR  RA + G
Sbjct  510  RAKILKDFANQTVHILVVTDLIARGIDIATITNVINYDLPNSSRDYVHRVGRTARANQDG  569

Query  614  LAISLVATEKEKVWY  628
             A ++   + E  W+
Sbjct  570  EAYTMCFGKGETKWF  584


 Score = 58.5 bits (140),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 76/148 (51%), Gaps = 10/148 (7%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +A+++ P++ L  Q         K   N  L  + +   ++  D+   L+   DI+V TP
Sbjct  273  RAIVLVPTKPLISQVKATFAMLSK---NTNLSVVSLRSDISINDEAQRLQVVPDIIVSTP  329

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQI---PQVTSDGK---RL  401
            GRL + ++ G +NL  +R+LV+DEAD LL+Q + ++   + ++I   P    D      +
Sbjct  330  GRLVEHLTNGHINLKSLRYLVIDEADRLLNQSFQNWCETLMSRIDSNPISELDQTWRPSV  389

Query  402  QVIVCSATLHSFDVKKLSEKIMHFPTWV  429
            Q +V SATL + D  +LS   +  P  +
Sbjct  390  QKLVFSATLTT-DAGRLSMLKLQRPRLI  416


 Score = 37.7 bits (86),  Expect = 0.40, Method: Compositional matrix adjust.
 Identities = 22/47 (47%), Positives = 34/47 (72%), Gaps = 4/47 (9%)

Query  17   VEEMDWLLPTDIQAESI-PLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            V  +  LLP D+++++I P I  GGD+L+ A TGSGKT  ++IP+I+
Sbjct  219  VSVLKLLLP-DMESQAIRPDI--GGDLLVNAATGSGKTLGYAIPIIE  262


>sp|Q6BH93|HAS1_DEBHA ATP-dependent RNA helicase HAS1 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=HAS1 PE=3 SV=1
Length=568

 Score = 63.2 bits (152),  Expect = 5e-09, Method: Compositional matrix adjust.
 Identities = 28/64 (44%), Positives = 38/64 (59%), Gaps = 0/64 (0%)

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            LHG +K  +R      F       LICTDVAARG+DI  V ++I    PD+ ++Y+HR+G
Sbjct  381  LHGKQKQQKRTNTFFEFCNATQGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVG  440

Query  605  RVGR  608
            R  R
Sbjct  441  RTAR  444


 Score = 59.3 bits (142),  Expect = 8e-08, Method: Compositional matrix adjust.
 Identities = 29/62 (47%), Positives = 43/62 (69%), Gaps = 0/62 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F E G+     +A+++M +   T +QA++IP +L G DVL AA+TGSGKT AF IP I++
Sbjct  106  FEEAGLSEPTLKAIKDMGFSKMTQVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEM  165

Query  64   VY  65
            +Y
Sbjct  166  LY  167


 Score = 53.1 bits (126),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 40/156 (26%), Positives = 78/156 (50%), Gaps = 10/156 (6%)

Query  281  KFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
            +F P N    ++V P+RELA Q     ++   +         ++IGG   R +   L  G
Sbjct  170  RFKPRNGTGVVVVSPTRELALQIFGVARELMAHHSQT---FGIVIGGANRRQEAEKLMKG  226

Query  340  VDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
            V++++ TPGR LD L +T       V+ LV+DEAD +L  G+ + + ++   +P   ++ 
Sbjct  227  VNLLIATPGRLLDHLQNTQGFVFKNVKALVIDEADRILEIGFEEEMKQIIKILP---NED  283

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE  434
            ++  +   + T    D+ ++S  +   P ++++  E
Sbjct  284  RQSMLFSATQTTKVEDLARIS--LRPGPLYINVASE  317


>sp|A5E5F7|MRH4_LODEL ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=MRH4 
PE=3 SV=1
Length=603

 Score = 63.2 bits (152),  Expect = 5e-09, Method: Compositional matrix adjust.
 Identities = 84/385 (22%), Positives = 149/385 (39%), Gaps = 90/385 (23%)

Query  288  KALIVEPSRELAEQTLNNIK--------------QFKKYIDNPKLREL-LIIG----GVA  328
            +++I+ P+ EL EQ    +K              Q+K++++ P+   L L I     G A
Sbjct  249  RSVILLPTHELVEQVYETLKRANSFLLEYENVPLQYKEFLNLPEHHTLGLSIAKLSHGDA  308

Query  329  ARDQLSVLEN--GVDIVVGTPGRLDDLVSTGKLN-----LSQVRFLVLDEADGLLSQGYS  381
              +    L N   +DI++ TPG++        ++        +R+ V+DEAD L    + 
Sbjct  309  PINVYKQLRNRGKIDILITTPGKITSFSKLESIDRPFKIFKSIRYCVIDEADTLFDDSF-  367

Query  382  DFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV  441
                 + +    V +  K L +I+ SAT                           +P   
Sbjct  368  -----LKDTTAVVKNFPKLLDLILVSAT---------------------------IPKEF  395

Query  442  HHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVR--  499
               ++ + P    L  R+    +     + K  T     +P   S+   + +  YA+   
Sbjct  396  EKTLLRLFPDQKSLI-RVATPSLHKISKNIKVMTLDADLAPYNGSKTRCLAQAIYAISKD  454

Query  500  AIKEHKMDQAIIFCRTKIDCDNL-----EQYFIQQGGGPDKKGHQFSCVC-LHGDRKPHE  553
              + + + + IIF   K + D L      +Y I++             +C + G     +
Sbjct  455  GTEHNHVKRIIIFVNEKAEVDGLVDLLQSKYHIRRED-----------ICGISGSVNVGD  503

Query  554  RKQNLERFKK-----------GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHR  602
            RK  LE F K             ++ L+ TD+ ARG++  G+  VI + LP      VHR
Sbjct  504  RKDYLEPFLKPAQLLEDDVDQSKIKILVTTDLLARGMNFIGIKNVILMGLPKSSVELVHR  563

Query  603  IGRVGRAERMGLAISLVATEKEKVW  627
            +GR GR  ++G    +V  +  K W
Sbjct  564  LGRTGRMNQLGRVFIIVDKKSRKSW  588


>sp|Q8K363|DDX18_MOUSE ATP-dependent RNA helicase DDX18 OS=Mus 
musculus OX=10090 GN=Ddx18 PE=1 SV=1
Length=660

 Score = 63.2 bits (152),  Expect = 6e-09, Method: Compositional matrix adjust.
 Identities = 26/69 (38%), Positives = 41/69 (59%), Gaps = 0/69 (0%)

Query  540  FSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNY  599
               + +HG +K ++R     +F   D   L+CTDVAARG+DI  V +++    PD+ + Y
Sbjct  440  LPVLAIHGKQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEY  499

Query  600  VHRIGRVGR  608
            +HR+GR  R
Sbjct  500  IHRVGRTAR  508


 Score = 62.4 bits (150),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 44/135 (33%), Positives = 73/135 (54%), Gaps = 11/135 (8%)

Query  277  VTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
            + + KF+P N    LI+ P+RELA QT   +K+   +  +      LI+GG     ++  
Sbjct  231  IVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVH---TYGLIMGGSNRSAEVQK  287

Query  336  LENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV  394
            L NG++I+V TPGR LD + +T       ++ LV+DEAD +L  G+ + + ++   +P  
Sbjct  288  LLNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPA-  346

Query  395  TSDGKRLQVIVCSAT  409
                 R Q ++ SAT
Sbjct  347  -----RRQTMLFSAT  356


 Score = 53.5 bits (127),  Expect = 7e-06, Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 38/50 (76%), Gaps = 0/50 (0%)

Query  15   QAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIV  64
            +A+EEM +   T+IQ +SI  +L G D+L AA+TGSGKT AF IPVI+++
Sbjct  182  KAIEEMGFKRMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIELI  231


>sp|Q4IBS2|MAK5_GIBZE ATP-dependent RNA helicase MAK5 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=MAK5 PE=3 SV=2
Length=781

 Score = 63.2 bits (152),  Expect = 7e-09, Method: Compositional matrix adjust.
 Identities = 32/79 (41%), Positives = 43/79 (54%), Gaps = 0/79 (0%)

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            LH       R ++LERF       LI TDVAARG+DI  V  V++  +P     Y+HR G
Sbjct  536  LHSQMAQKARHRSLERFTASRNSILIATDVAARGLDIKEVDQVLHYHVPRSADTYIHRSG  595

Query  605  RVGRAERMGLAISLVATEK  623
            R  R E  G+++ L A E+
Sbjct  596  RTARGESSGISVILCAPEE  614


 Score = 59.7 bits (143),  Expect = 7e-08, Method: Compositional matrix adjust.
 Identities = 27/62 (44%), Positives = 43/62 (69%), Gaps = 0/62 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            MAA+  + + P+I  A+ ++ ++ PT IQ  +IP I+ G DV+  A+TGSGKT AF IP+
Sbjct  214  MAAWVSLNLSPQIISAIAKLKFMKPTKIQKRTIPEIVAGHDVIGKAQTGSGKTLAFGIPM  273

Query  61   IQ  62
            ++
Sbjct  274  VE  275


 Score = 53.1 bits (126),  Expect = 9e-06, Method: Compositional matrix adjust.
 Identities = 37/113 (33%), Positives = 62/113 (55%), Gaps = 9/113 (8%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P +L++ P+RELA+Q  +++K     + +      ++ GG++   Q   LE   DIV+GT
Sbjct  290  PMSLVLSPTRELAKQLGDHLKALCDGLPSAPY-VCVVTGGLSILKQQRQLEK-ADIVIGT  347

Query  347  PGRLDDLVSTGKL---NLSQVRFLVLDEADGLLSQGY----SDFINRMHNQIP  392
            PGRL +++S  +      +++RFLV+DEAD L   G      D I  +  + P
Sbjct  348  PGRLWEVLSGDRALQSKFAKIRFLVVDEADRLFKVGQFKEAEDIIGALDGKSP  400


>sp|A7TPC9|DBP9_VANPO ATP-dependent RNA helicase DBP9 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=DBP9 PE=3 SV=2
Length=597

 Score = 62.8 bits (151),  Expect = 8e-09, Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 83/152 (55%), Gaps = 8/152 (5%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR  349
            +I+ P+RELA+Q  + + +   Y  N  +R L I   + +    S+L    +I++ TPG+
Sbjct  100  IILVPTRELAQQVNDVLDKMILYCSN-DIRSLNISSDMPSSVLTSLLLEKPEIIIATPGK  158

Query  350  LDDLVSTG--KLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            L  L+ T    ++L +++FLV+DE D +L+ GY + ++++   +P      K LQ  + S
Sbjct  159  LMTLLDTNVESVSLEELKFLVIDEVDLVLTFGYKEDLSKIAEYLPL----KKNLQTFLMS  214

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPD  439
            ATL+  D+++L ++    P  +    ++   D
Sbjct  215  ATLND-DIQELKKEFCRAPAILKFNDDEISKD  245


 Score = 52.0 bits (123),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 0/50 (0%)

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
             +RG+D   V  V+N  LP   ++YVHRIGR  RA + G AIS V   KE
Sbjct  384  VSRGVDFQNVACVLNFDLPTTAKSYVHRIGRTARAGKTGTAISFVVPLKE  433


 Score = 44.7 bits (104),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 24/65 (37%), Positives = 38/65 (58%), Gaps = 1/65 (2%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILG-GGDVLMAAETGSGKTGAFSIPVI  61
           +F  + +   + QA++   +  PT IQ+ +IPL L    D++  A TG GKT A+ IPVI
Sbjct  18  SFESLQLDTRLLQAIKRNGFKNPTLIQSHAIPLALQEKRDIIAKAATGCGKTLAYLIPVI  77

Query  62  QIVYE  66
           Q + +
Sbjct  78  QTILD  82


>sp|Q1DWF4|DBP9_COCIM ATP-dependent RNA helicase DBP9 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DBP9 PE=3 SV=2
Length=612

 Score = 62.4 bits (150),  Expect = 9e-09, Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 7/124 (6%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            ALI+ P+RELAEQ  N +  F  +     +R   +   V+   Q ++L +  DI++ TP 
Sbjct  100  ALILVPTRELAEQVQNAVVSFSSFCGK-DIRSANLTQKVSDAVQRAILADLPDIIISTPA  158

Query  349  RLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSA  408
            R     ++  L+L+ +  LV+DEAD +LS GY   +  +   IP      + +Q ++ SA
Sbjct  159  RAIINTNSSSLSLNDLTHLVIDEADLVLSYGYEQDMQNLAKAIP------RGVQTLLMSA  212

Query  409  TLHS  412
            TL S
Sbjct  213  TLTS  216


 Score = 62.4 bits (150),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 27/63 (43%), Positives = 43/63 (68%), Gaps = 0/63 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F  + + P + QA+ +  +  PT +QAE+IPL+L G DVL  A+TGSGKT A+ +P++Q 
Sbjct  25  FETLHLDPRLLQALTKQKFTKPTLVQAEAIPLVLSGKDVLARAKTGSGKTAAYLLPILQS  84

Query  64  VYE  66
           + +
Sbjct  85  ILQ  87


 Score = 51.6 bits (122),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 0/44 (0%)

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +RGID   V  V+N  LP   ++Y HRIGR GRA + G+A+SL+
Sbjct  387  SRGIDFQDVACVLNFDLPTTAKSYTHRIGRTGRAGKTGMALSLI  430


>sp|Q9NVP1|DDX18_HUMAN ATP-dependent RNA helicase DDX18 OS=Homo 
sapiens OX=9606 GN=DDX18 PE=1 SV=2
Length=670

 Score = 62.8 bits (151),  Expect = 9e-09, Method: Compositional matrix adjust.
 Identities = 26/67 (39%), Positives = 41/67 (61%), Gaps = 0/67 (0%)

Query  542  CVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH  601
             + +HG +K ++R     +F   D   L+CTDVAARG+DI  V +++    PD+ + Y+H
Sbjct  452  VLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIH  511

Query  602  RIGRVGR  608
            R+GR  R
Sbjct  512  RVGRTAR  518


 Score = 60.8 bits (146),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 43/135 (32%), Positives = 72/135 (53%), Gaps = 11/135 (8%)

Query  277  VTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
            + + +F+P N    LI+ P+RELA QT   +K+   +  +      LI+GG     +   
Sbjct  241  IVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYG---LIMGGSNRSAEAQK  297

Query  336  LENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV  394
            L NG++I+V TPGR LD + +T       ++ LV+DEAD +L  G+ + + ++   +P  
Sbjct  298  LGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPT-  356

Query  395  TSDGKRLQVIVCSAT  409
                 R Q ++ SAT
Sbjct  357  -----RRQTMLFSAT  366


 Score = 49.7 bits (117),  Expect = 8e-05, Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 37/50 (74%), Gaps = 0/50 (0%)

Query  15   QAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIV  64
            +A++EM +   T+IQ +SI  +L G D+L AA+TGSGKT AF IP ++++
Sbjct  192  KAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELI  241


>sp|Q59ZH9|MAK5_CANAL ATP-dependent RNA helicase MAK5 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=MAK5 
PE=3 SV=2
Length=782

 Score = 62.8 bits (151),  Expect = 9e-09, Method: Compositional matrix adjust.
 Identities = 46/141 (33%), Positives = 72/141 (51%), Gaps = 7/141 (5%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P  +I  P+RELA Q ++++ +  KY        + I GG++ + Q  +L +G  I+V
Sbjct  276  NHPTGIIFAPTRELAHQVVDHLNKLAKYSPLSTRGIVSITGGLSIQKQQRLLRHGPGIIV  335

Query  345  GTPGRLDDLV---STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQI----PQVTSD  397
             TPGR+ +LV   S     L+ +  +VLDEAD LL  G+ D   ++        P+  S 
Sbjct  336  ATPGRMLELVQGDSELAKRLASIDIIVLDEADRLLQDGHFDEFEKILELFGKNRPKSKSI  395

Query  398  GKRLQVIVCSATLHSFDVKKL  418
              + Q +V SAT      +KL
Sbjct  396  EWKWQTLVFSATFSRDLFRKL  416


 Score = 60.1 bits (144),  Expect = 7e-08, Method: Compositional matrix adjust.
 Identities = 38/137 (28%), Positives = 66/137 (48%), Gaps = 12/137 (9%)

Query  542  CVCLHGDRKPHERKQNLERFK----KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQ  597
               +H      +R + LE+FK    K +V  L+ +DVAARG+DI  + +V++  LP    
Sbjct  514  AFSIHSSMIQKQRLRALEKFKEASQKNEVAVLVASDVAARGLDIPNIDHVVHYHLPRSAD  573

Query  598  NYVHRIGRVGRAERMGLAISLVATEK-----EKVWYHVCSSRGKGCYNTRLKEDGGCTIW  652
             Y+HR GR  RA + G+++   + ++      K+   V    G     +RL       + 
Sbjct  574  VYIHRSGRTARAGKEGVSVMFCSPQEASGPLRKLRRLVA---GNSNKESRLNMHNDVKLL  630

Query  653  YNEMQLLSEIEEHLNCT  669
              EM L+S+I+  +  +
Sbjct  631  PIEMDLVSQIKPRVEIS  647


 Score = 52.0 bits (123),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 40/62 (65%), Gaps = 0/62 (0%)

Query  17   VEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKK  76
            + ++D+  PT IQ E+IP+ L G DV+  A TGSGKT A+ IP+++   ++L   ++  K
Sbjct  212  LSQLDFKKPTPIQKETIPIALSGKDVIGKATTGSGKTLAYGIPILEKYIQSLNLIKQNNK  271

Query  77   GK  78
             K
Sbjct  272  DK  273


>sp|Q5AK59|HAS1_CANAL ATP-dependent RNA helicase HAS1 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=HAS1 
PE=3 SV=1
Length=565

 Score = 62.4 bits (150),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 26/64 (41%), Positives = 38/64 (59%), Gaps = 0/64 (0%)

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            LHG +K  +R      F       L+CTDVAARG+DI  V +++    PD+ ++Y+HR+G
Sbjct  384  LHGKQKQQKRTNTFFEFCNAKQGILVCTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVG  443

Query  605  RVGR  608
            R  R
Sbjct  444  RTAR  447


 Score = 58.9 bits (141),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 78/153 (51%), Gaps = 8/153 (5%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N    +I+ P+RELA Q     ++  ++         ++IGG   R + + L  GV+++V
Sbjct  179  NGTAVIIITPTRELALQIFGVARELMQFHSQTCG---IVIGGADRRQEATKLAKGVNLLV  235

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D +   +   S ++ LV+DEAD +L  G+ D + ++   +P   ++ ++  + 
Sbjct  236  ATPGRLLDHLKNTQFVFSNLKALVIDEADRILEIGFEDEMKQIIKVLP---NENRQSMLF  292

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSV  437
              + T    D+ ++S  +   P ++++  E  V
Sbjct  293  SATQTTKVEDLARIS--LRPGPLYINVVPEKDV  323


 Score = 57.4 bits (137),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 27/51 (53%), Positives = 39/51 (76%), Gaps = 0/51 (0%)

Query  15   QAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVY  65
            +A++EM +   T +QA++IP +L G DVL AA+TGSGKT AF IP I+++Y
Sbjct  121  KAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLY  171


>sp|Q1EA54|HAS1_COCIM ATP-dependent RNA helicase HAS1 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=HAS1 PE=3 SV=1
Length=604

 Score = 62.0 bits (149),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 28/64 (44%), Positives = 38/64 (59%), Gaps = 0/64 (0%)

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            LHG +K  +R      F       LICTDVAARG+DI  V ++I    PD+ ++Y+HR+G
Sbjct  401  LHGKQKQQKRTNTFFEFCNAKQGTLICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVG  460

Query  605  RVGR  608
            R  R
Sbjct  461  RTAR  464


 Score = 56.2 bits (134),  Expect = 7e-07, Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 79/163 (48%), Gaps = 8/163 (5%)

Query  277  VTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
            ++  +F P N    ++V P+RELA Q     ++   +         ++IGG   R +   
Sbjct  186  LSALRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYG---IVIGGANRRAEAEK  242

Query  336  LENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV  394
            L  GV++++ TPGR LD L +T       ++ LV+DEAD +L  G+ D + ++   +P  
Sbjct  243  LTKGVNLLIATPGRLLDHLQNTDGFVFKNLKALVIDEADRILEVGFEDEMRQIVKILP--  300

Query  395  TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSV  437
             S+ ++  +   + T    D+ ++S +       VD + E S 
Sbjct  301  -SEDRQTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHST  342


 Score = 55.1 bits (131),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 25/61 (41%), Positives = 42/61 (69%), Gaps = 0/61 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+E+ +  +  +A++EM +   T+IQ   IP ++ G DVL AA+TGSGKT +F IP +++
Sbjct  126  FTELNLSEKTLKAIQEMGFETMTEIQRRGIPPLMAGRDVLGAAKTGSGKTLSFLIPAVEM  185

Query  64   V  64
            +
Sbjct  186  L  186


>sp|Q4P6N0|HAS1_USTMA ATP-dependent RNA helicase HAS1 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=HAS1 PE=3 SV=2
Length=574

 Score = 62.0 bits (149),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            LHG +K  +R      +       L+CTDVAARG+DI  V ++I    PD+ ++Y+HR+G
Sbjct  327  LHGKQKQQKRTNTFFEYCNAPCGTLLCTDVAARGLDIPSVDWIIQFDPPDDPRDYIHRVG  386

Query  605  RVGRAERMGLA-ISLVATE  622
            R  RA   G + + L+ TE
Sbjct  387  RTARAGNSGKSLLFLLPTE  405


 Score = 60.5 bits (145),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 74/143 (52%), Gaps = 8/143 (6%)

Query  279  QTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE  337
            + KF P N   A+I+ P+RELA Q     K+   +         +I+GG   R +   L+
Sbjct  114  RLKFKPRNGTGAIIISPTRELALQIFGVAKELMAHHHQT---FGIIMGGANRRAEADKLQ  170

Query  338  NGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTS  396
             GV+++V TPGR LD L +T     S ++ L +DEAD +L  G+ D + ++   +P   +
Sbjct  171  KGVNLIVATPGRLLDHLQNTKGFVFSNLKALCIDEADRILEIGFEDEMRQIVKILP---N  227

Query  397  DGKRLQVIVCSATLHSFDVKKLS  419
            D ++  +   + T    D+ ++S
Sbjct  228  DNRQSMLFSATQTTKVQDLARIS  250


 Score = 52.8 bits (125),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 25/63 (40%), Positives = 41/63 (65%), Gaps = 0/63 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS + +     +A++ M +   T++QA  IP ++ G DVL AA+TGSGKT +F IP I++
Sbjct  52   FSILDLSEPTRKAIDAMGFKTMTEVQARCIPPLMAGKDVLGAAQTGSGKTLSFLIPAIEM  111

Query  64   VYE  66
            ++ 
Sbjct  112  LHR  114


>sp|Q4IEK8|HAS1_GIBZE ATP-dependent RNA helicase HAS1 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=HAS1 PE=3 SV=2
Length=591

 Score = 62.0 bits (149),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 28/64 (44%), Positives = 38/64 (59%), Gaps = 0/64 (0%)

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            LHG +K  +R      F       LICTDVAARG+DI  V ++I    PD+ ++Y+HR+G
Sbjct  391  LHGKQKQQKRTNTFFEFCNAKQGTLICTDVAARGLDIPSVDWIIQFDPPDDPRDYIHRVG  450

Query  605  RVGR  608
            R  R
Sbjct  451  RTAR  454


 Score = 57.0 bits (136),  Expect = 5e-07, Method: Compositional matrix adjust.
 Identities = 29/62 (47%), Positives = 41/62 (66%), Gaps = 0/62 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F E+ +  +  +A+ EM +   T+IQ   IP  L G DVL AA+TGSGKT AF IPVI+
Sbjct  116  SFEELKLSEKTMKAINEMKFTKMTEIQRRGIPPSLAGRDVLGAAKTGSGKTLAFLIPVIE  175

Query  63   IV  64
            ++
Sbjct  176  ML  177


 Score = 55.5 bits (132),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 37/134 (28%), Positives = 67/134 (50%), Gaps = 9/134 (7%)

Query  277  VTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
            ++  +F P N    ++V P+RELA Q     ++   +         ++IGG   R +   
Sbjct  177  LSSLRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYG---IVIGGANRRAEAEK  233

Query  336  LENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
            L  GV++++ TPGRL D +         ++ LV+DEAD +L  G+ D + ++   +P+  
Sbjct  234  LAKGVNLLIATPGRLLDHLQNTPFVFKNLKSLVIDEADRILEIGFEDEMRQIIKVLPK--  291

Query  396  SDGKRLQVIVCSAT  409
               +  Q ++ SAT
Sbjct  292  ---EDRQTMLFSAT  302


>sp|Q4WQM4|HAS1_ASPFU ATP-dependent RNA helicase has1 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=has1 PE=3 SV=2
Length=622

 Score = 62.0 bits (149),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 28/64 (44%), Positives = 38/64 (59%), Gaps = 0/64 (0%)

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            LHG +K  +R      F       LICTDVAARG+DI  V ++I    PD+ ++Y+HR+G
Sbjct  417  LHGKQKQQKRTNTFFEFCNAKQGTLICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVG  476

Query  605  RVGR  608
            R  R
Sbjct  477  RTAR  480


 Score = 58.5 bits (140),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 44/163 (27%), Positives = 80/163 (49%), Gaps = 8/163 (5%)

Query  277  VTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
            ++  +F P N    ++V P+RELA Q     ++  +Y         ++IGG   R +   
Sbjct  202  LSALRFKPRNGTGVIVVSPTRELALQIFGVARELCQYHSQTYG---IVIGGANRRAEAEK  258

Query  336  LENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV  394
            L  GV++++ TPGR LD L +T       ++ LV+DEAD +L  G+ D + ++   +P  
Sbjct  259  LMKGVNLLIATPGRLLDHLQNTQGFVFKNLKTLVIDEADRILEVGFEDEMRQIVKILP--  316

Query  395  TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSV  437
             S+ ++  +   + T    D+ ++S +       VD + E S 
Sbjct  317  -SEERQTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHST  358


 Score = 57.0 bits (136),  Expect = 5e-07, Method: Compositional matrix adjust.
 Identities = 26/61 (43%), Positives = 43/61 (70%), Gaps = 0/61 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+E+G+  +  +A+ +M +   T+IQ  +IP +L G DVL AA+TGSGKT +F IP +++
Sbjct  142  FTELGLSEKTLKAINDMGFETMTEIQRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVEM  201

Query  64   V  64
            +
Sbjct  202  L  202


>sp|Q0UHM7|DBP7_PHANO ATP-dependent RNA helicase DBP7 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=DBP7 PE=3 SV=1
Length=831

 Score = 62.0 bits (149),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 45/141 (32%), Positives = 74/141 (52%), Gaps = 12/141 (9%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            A+I+ P+REL++Q    +++         L    +IGG   + + + L  G++I+V TPG
Sbjct  273  AIIMAPTRELSKQIALVLEKLLGCAH--WLVATTVIGGEKKKSEKARLRKGINILVATPG  330

Query  349  RL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN--------RMHNQIPQVTSDGK  399
            RL D L  T  L++S VR+LVLDE D L+  G+   I         RM     ++     
Sbjct  331  RLADHLEHTEALDVSNVRWLVLDEGDRLMELGFEQEIQKIVGALNLRMRGNKTRIPGLPD  390

Query  400  RLQVIVCSATLHSFDVKKLSE  420
            +   ++CSAT+   DV++L +
Sbjct  391  KRTTVLCSATM-KMDVERLGQ  410


 Score = 56.2 bits (134),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 42/81 (52%), Gaps = 1/81 (1%)

Query  536  KGHQFSCVCLHGDRKPHERKQNLERF-KKGDVRFLICTDVAARGIDIHGVPYVINVTLPD  594
            K H  +   LHG  +   R   L  F K  D   LI TDVA+RG+D+  V  V+      
Sbjct  552  KSHAVTAYRLHGSLQQSLRTSTLAHFTKNNDAAVLIATDVASRGLDLPNVDLVVEFDPAF  611

Query  595  EKQNYVHRIGRVGRAERMGLA  615
             +++++HRIGR  RA R G A
Sbjct  612  AREDHLHRIGRTARAGRDGRA  632


 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 24/65 (37%), Positives = 39/65 (60%), Gaps = 2/65 (3%)

Query  4    FSEMGVMPEIA-QAVEEMDWLLPTDIQAESIP-LILGGGDVLMAAETGSGKTGAFSIPVI  61
            F+ +G+   +A   +++MD   PT IQ  +I  L+    D  + AETGSGKT A+ +P++
Sbjct  187  FTSLGISTTLAAHLLKKMDLKAPTAIQKAAITQLVKDDSDAFIQAETGSGKTLAYLLPIV  246

Query  62   QIVYE  66
            Q + E
Sbjct  247  QRLME  251


>sp|A1CW14|HAS1_NEOFI ATP-dependent RNA helicase has1 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=has1 
PE=3 SV=1
Length=622

 Score = 62.0 bits (149),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 28/64 (44%), Positives = 38/64 (59%), Gaps = 0/64 (0%)

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            LHG +K  +R      F       LICTDVAARG+DI  V ++I    PD+ ++Y+HR+G
Sbjct  417  LHGKQKQQKRTNTFFEFCNAKQGTLICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVG  476

Query  605  RVGR  608
            R  R
Sbjct  477  RTAR  480


 Score = 58.2 bits (139),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 44/163 (27%), Positives = 80/163 (49%), Gaps = 8/163 (5%)

Query  277  VTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
            ++  +F P N    ++V P+RELA Q     ++  +Y         ++IGG   R +   
Sbjct  202  LSALRFKPRNGTGVIVVSPTRELALQIFGVARELCQYHSQTYG---IVIGGANRRAEAEK  258

Query  336  LENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV  394
            L  GV++++ TPGR LD L +T       ++ LV+DEAD +L  G+ D + ++   +P  
Sbjct  259  LMKGVNLLIATPGRLLDHLQNTQGFIFKNLKTLVIDEADRILEVGFEDEMRQIVKILP--  316

Query  395  TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSV  437
             S+ ++  +   + T    D+ ++S +       VD + E S 
Sbjct  317  -SEERQTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHST  358


 Score = 57.0 bits (136),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 26/61 (43%), Positives = 43/61 (70%), Gaps = 0/61 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+E+G+  +  +A+ +M +   T+IQ  +IP +L G DVL AA+TGSGKT +F IP +++
Sbjct  142  FTELGLTEKTLKAINDMGFDTMTEIQRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVEM  201

Query  64   V  64
            +
Sbjct  202  L  202


>sp|Q6BV58|MAK5_DEBHA ATP-dependent RNA helicase MAK5 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=MAK5 PE=3 SV=1
Length=790

 Score = 62.0 bits (149),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 73/144 (51%), Gaps = 8/144 (6%)

Query  275  AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLS  334
            A+  Q+K + N P  +I  P+RELA Q ++++ +  K+    +   + I GG++ + Q  
Sbjct  266  AKANQSKKVINPPTGIIFAPTRELAHQVVDHLNRIAKFTPLSQHGIVSITGGLSIQKQER  325

Query  335  VLENGVDIVVGTPGRLDDLVSTGKL---NLSQVRFLVLDEADGLLSQGYSD-FINRMHNQ  390
            +L +G  IVV TPGR  +L+         LS    +VLDEAD LL  G+ D F+  +   
Sbjct  326  LLSHGPGIVVATPGRFLELLQKDMALVQRLSCTDIVVLDEADRLLQDGHFDEFVKILELF  385

Query  391  IPQVTSDGKRL----QVIVCSATL  410
                  D K L    Q +V SAT 
Sbjct  386  GKHRPRDNKELEWKWQTLVFSATF  409


 Score = 61.2 bits (147),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 42/129 (33%), Positives = 64/129 (50%), Gaps = 12/129 (9%)

Query  544  CLHGDRKPHERKQNLERFK----KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNY  599
             +H      +R + LERFK    K     LI +DVAARG+DI  + +V +  LP     Y
Sbjct  523  SIHSSMIQKQRLRTLERFKEASSKNSTAVLIASDVAARGLDIPNIDHVAHYHLPRSADVY  582

Query  600  VHRIGRVGRAERMGLAISLVATEK-----EKVWYHVCSSRGKGCYNTRLKEDGGCTIWYN  654
            +HR GR GRA + G++I   + ++      K+   V ++  K    TRL       +   
Sbjct  583  IHRSGRTGRAGKEGVSIMFCSPQESSGPLRKLRKLVANNTKK---RTRLNVHNDVKLLPL  639

Query  655  EMQLLSEIE  663
            EM L+S+I+
Sbjct  640  EMDLVSQIK  648


 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 22/57 (39%), Positives = 35/57 (61%), Gaps = 0/57 (0%)

Query  20   MDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKK  76
            +++  PT IQ  +IPL + G DV+  A TGSGKT A+ IP+++   + +    + KK
Sbjct  217  LEYEKPTAIQKRTIPLAIEGKDVIGKAITGSGKTLAYGIPILERHLQKMAKANQSKK  273


>sp|Q6BV94|MRH4_DEBHA ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 
/ BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=MRH4 
PE=3 SV=1
Length=593

 Score = 61.2 bits (147),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 83/389 (21%), Positives = 159/389 (41%), Gaps = 92/389 (24%)

Query  288  KALIVEPSRELAEQTLNNIKQF------------KKYIDNPKLRELLIIGGVAARDQLSV  335
            +++I+ P+ EL EQ  +++K+             KK + +P+    L +        L+V
Sbjct  233  RSVILLPTHELVEQVYDSLKRASKASIDLEASVNKKILQDPQYARYLSLPENQTSLNLNV  292

Query  336  LENG---------------VDIVVGTPGRLDDLVSTGKLN-----LSQVRFLVLDEADGL  375
            ++ G               +D++V TP ++  L     ++      + V + V+DEAD L
Sbjct  293  VKWGSGDSHQKLFDAGRKRIDVLVTTPAKIQGLAKLNNVSRPFRLFNFVEYCVVDEADTL  352

Query  376  LSQGYSDFINRMHNQIPQVTSDGKRLQ----VIVCSATLHSFDVKKLSEKIMHFPTWVDL  431
            + + +          I   TS  +RL     +I CSAT+   + KK   K+         
Sbjct  353  MDKSW----------IVDTTSVIRRLSKCKDLIFCSATIPK-EFKKTLGKMF--------  393

Query  432  KGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
                  PD    + + V P   ++ +++   +++  D            SP   S+   +
Sbjct  394  ------PDEFSIINI-VTPSLHKIPKQI---NLKVIDAQL---------SPYNGSKTRCL  434

Query  492  LKGEYAVR--AIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDR  549
             +  YA+     ++  + + ++F   K D   L    I++ G  ++       + + G  
Sbjct  435  AQALYAIHNDGTEQGYVKRILVFVNEKRDVQPLADTLIEKFGHREE-----DIIGITGAD  489

Query  550  KPHERKQNLERFKK-----------GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQN  598
               +R   +E F K             V+ LI TD+ ARG++ +G+  VI + LP+   +
Sbjct  490  NADDRLAKIEPFLKPAELLEEDLDGSKVKVLITTDLLARGLNFNGIKNVILMDLPNTSVD  549

Query  599  YVHRIGRVGRAERMGLAISLVATEKEKVW  627
             VHR+GR GR  + G    ++  +  K W
Sbjct  550  LVHRVGRTGRMRQSGRVFVIIDKKTGKSW  578


>sp|Q2UE66|DBP7_ASPOR ATP-dependent RNA helicase dbp7 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp7 
PE=3 SV=1
Length=760

 Score = 61.6 bits (148),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 88/174 (51%), Gaps = 36/174 (21%)

Query  289  ALIVEPSRELAEQ---TLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            A+++ P+REL +Q    L ++ +   +I         +IGG   + + + L  G++I+V 
Sbjct  228  AIVLAPTRELCKQISVVLESLLRCAHWI-----VAGTVIGGEKKKSEKARLRKGLNILVA  282

Query  346  TPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD----FINRMH-----NQIPQVT  395
            TPGRL D L +T  L++S VR+LVLDE D L+  G+       I ++      ++IP + 
Sbjct  283  TPGRLADHLENTQALDVSNVRWLVLDEGDRLMELGFEKELQGIIQKLDARQRPSRIPGIP  342

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN  449
            +   +   I+CSATL   +V+KL              GE S+ D VH    P +
Sbjct  343  T---KRTTILCSATL-KMNVQKL--------------GEISLKDAVHIKADPAD  378


 Score = 50.1 bits (118),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query  545  LHGDRKPHERKQNLERF-KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI  603
            LHG    H R   L  F ++ +   L+CTDVA+RG+D+  V  VI         ++ HRI
Sbjct  502  LHGSLPQHVRTATLNAFSREREPSVLVCTDVASRGLDLPNVDLVIEYDPAFSADDHTHRI  561

Query  604  GRVGRAERMGLAI  616
            GR  R  R G A+
Sbjct  562  GRTARLGRDGRAL  574


 Score = 42.0 bits (97),  Expect = 0.025, Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 2/66 (3%)

Query  1    MAAFSEMGVMPEIA-QAVEEMDWLLPTDIQAESIPLILG-GGDVLMAAETGSGKTGAFSI  58
            +  F+ +G+ P +A   + +++   PT IQ  S+  +L    D  + AETGSGKT A+ +
Sbjct  136  LDTFTNLGLSPSLAAHLLTKLELKAPTGIQKASMSQLLKEDSDAFIQAETGSGKTLAYLL  195

Query  59   PVIQIV  64
            P++Q +
Sbjct  196  PLVQRI  201


>sp|Q0UZ59|DBP9_PHANO ATP-dependent RNA helicase DBP9 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=DBP9 PE=3 SV=1
Length=597

 Score = 61.2 bits (147),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 53/81 (65%), Gaps = 8/81 (10%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +A+F+E+ + P + + + +  W  PT +Q+++IPL L G D+L  + TG+GKTGA+ +P 
Sbjct  46   VASFAELQLEPRLLRGIRDQKWGSPTAVQSKAIPLALQGRDILARSGTGTGKTGAYLLP-  104

Query  61   IQIVYETLKDQQEGKKGKTTI  81
              I++ TL      +KGKT++
Sbjct  105  --ILHNTLL-----RKGKTSL  118


 Score = 52.0 bits (123),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 43/174 (25%), Positives = 82/174 (47%), Gaps = 16/174 (9%)

Query  277  VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV-  335
            +     L     +LI+ P++ELA Q     K    +       + + I  +A ++   V 
Sbjct  105  ILHNTLLRKGKTSLILVPTKELALQITKVAKALSAHCG-----QAVRIQNIAGKESEVVT  159

Query  336  ---LENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP  392
               L +  DIV+ TP R    ++TG L ++++  LV+DE D ++  G+ + ++++   IP
Sbjct  160  KAKLADNPDIVIATPARASANINTGALAVTELAHLVVDEGDLVMGYGFKEDLDQIAQNIP  219

Query  393  QVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVV  446
                  K +Q+ + SATL++ +V+ L   + + P  + L   D     V   V+
Sbjct  220  ------KGVQMFLMSATLNT-EVESLGSLLCNDPVVLKLDDLDKDSKRVKQYVI  266


 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 35/65 (54%), Gaps = 2/65 (3%)

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRG  635
            +RGID   V  V+N   P   ++Y HRIGR  RA + G AIS +   K+K   H  ++  
Sbjct  378  SRGIDFLNVSCVLNFDFPATYKSYFHRIGRTARAGKSGTAISFI-IPKDKYRKHKSTTFA  436

Query  636  KGCYN  640
             GC N
Sbjct  437  -GCEN  440


>sp|Q751D1|DBP6_EREGS ATP-dependent RNA helicase DBP6 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DBP6 PE=3 SV=1
Length=607

 Score = 60.8 bits (146),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 27/65 (42%), Positives = 40/65 (62%), Gaps = 0/65 (0%)

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
            G    L+ TD+ +RG+DI G+ +VIN  LP   Q YVHR GR  RA   G A++L+  + 
Sbjct  491  GHCSILVSTDLMSRGLDISGISHVINYDLPISSQQYVHRCGRTARANTSGTAVNLLVGKG  550

Query  624  EKVWY  628
            E+ ++
Sbjct  551  EQNFW  555


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 41/153 (27%), Positives = 77/153 (50%), Gaps = 23/153 (15%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGV----  340
            N  +A+I+ P++ L  Q  + ++   K           ++  V+  D  S+ E       
Sbjct  245  NKLRAVILVPTKLLVHQVYDTVQALAKGSS--------VVVAVSKMDT-SLKEESAKLKA  295

Query  341  ---DIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYS----DFINRMHNQIPQ  393
               D+++ TPGRL D ++    +L  ++FLVLDEAD LL+Q +     + + R++ + P 
Sbjct  296  QEPDVLIITPGRLVDHLNMQTFSLKNLKFLVLDEADRLLNQSFQNWCIELMTRLNAERP-  354

Query  394  VTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFP  426
                G  +++I  SATL + + ++L +  +H P
Sbjct  355  FKGPGNVIKMIF-SATL-TTNTERLHDLQLHNP  385


>sp|A5DPU0|MAK5_PICGU ATP-dependent RNA helicase MAK5 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=MAK5 PE=3 
SV=1
Length=754

 Score = 61.2 bits (147),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 40/135 (30%), Positives = 66/135 (49%), Gaps = 12/135 (9%)

Query  544  CLHGDRKPHERKQNLERFK----KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNY  599
             +H      +R + LERFK    K     LI +DVAARG+DI  + +V +  LP     Y
Sbjct  500  SIHSSMIQKQRLRALERFKAAGEKNQTAVLIASDVAARGLDIPNIDHVAHYHLPRSADVY  559

Query  600  VHRIGRVGRAERMGLAISLVATEK-----EKVWYHVCSSRGKGCYNTRLKEDGGCTIWYN  654
            VHR GR  RA + G+++   + ++      K+   V  S  KG   +R+       +   
Sbjct  560  VHRSGRTARAGKEGVSVMFCSPQEASGPFRKLRKLVADSANKG---SRMNMHSDVKLLPI  616

Query  655  EMQLLSEIEEHLNCT  669
            EM L+++++  +N +
Sbjct  617  EMDLVTQLKPRVNIS  631


 Score = 59.7 bits (143),  Expect = 8e-08, Method: Compositional matrix adjust.
 Identities = 45/141 (32%), Positives = 75/141 (53%), Gaps = 8/141 (6%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P A+I  P+RELA Q ++++ +  K+    +   + I GG++ + Q  +L +G  I+V T
Sbjct  260  PTAMIFAPTRELAHQVVDHMNKIAKFSPLAQNGIVSITGGLSIQKQERLLSHGPSILVAT  319

Query  347  PGRLDDLV--STGKLN-LSQVRFLVLDEADGLLSQG----YSDFINRMHNQIPQVTSD-G  398
            PGR  +L+  S   +N ++    +VLDEAD LL  G    +   ++ ++   P+ T    
Sbjct  320  PGRCLELMEKSVDLVNRMALTDMIVLDEADRLLQDGHFEEFEKILDMLNKHRPKKTQGVS  379

Query  399  KRLQVIVCSATLHSFDVKKLS  419
            +R Q +V SAT       KLS
Sbjct  380  RRWQTLVFSATFSRDLFGKLS  400


 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 34/57 (60%), Gaps = 0/57 (0%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTI  81
            PT IQ ++IPL L G DV+  A TGSGKT A+ IP+++     L+ +    K  T +
Sbjct  207  PTAIQRKAIPLALQGKDVIGKATTGSGKTLAYGIPILERCLAQLESKTNTIKPPTAM  263


>sp|A4QTR1|DBP9_PYRO7 ATP-dependent RNA helicase DBP9 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=DBP9 PE=3 SV=1
Length=636

 Score = 60.8 bits (146),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 34/90 (38%), Positives = 54/90 (60%), Gaps = 11/90 (12%)

Query  6    EMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVY  65
            ++G+ P + QAV +  +  PT +Q+++IPL L G DVL  A+TGSGKT A+ +P++Q V 
Sbjct  47   DLGLDPRLLQAVAQQSFQKPTLVQSKAIPLALEGRDVLAKAKTGSGKTAAYVLPILQAV-  105

Query  66   ETLKDQQEGKKGKTTIKTGASVLNKWQMNP  95
              LK +Q        I  GA+ ++   + P
Sbjct  106  --LKRKQ--------INPGATYISSLILVP  125


 Score = 60.5 bits (145),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 48/162 (30%), Positives = 84/162 (52%), Gaps = 15/162 (9%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG---GVAARDQLSVLENGV-DIVV  344
            +LI+ P+REL  Q    +++F  +      +E+ ++G    V+   Q S+L++   DIVV
Sbjct  120  SLILVPTRELTVQVTKEVERFSAFC----AKEVQVVGLTDKVSDAVQRSLLQSSSPDIVV  175

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TP      V +G L+L ++  LVLDEAD +LS GY + + ++   +P      K +Q +
Sbjct  176  STPSTAWRNVDSGALSLDKLTHLVLDEADLVLSYGYDEDLEKVARGLP------KGVQTV  229

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVV  446
            + SATL   ++  L    +  P  +DL+  D+    +   +V
Sbjct  230  MTSATLTD-EIDTLKGIFLRDPVLLDLEEPDAEGSEITQYIV  270


 Score = 47.8 bits (112),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (2%)

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
            +RGID   V  V+N  LP    +Y HRIGR GRA + G+ +S     KE    H+ +S
Sbjct  411  SRGIDFKNVAVVVNFDLPLSSTSYTHRIGRTGRAGQAGMVLSFYVP-KELFRKHIPTS  467


>sp|Q9LIH9|RH51_ARATH DEAD-box ATP-dependent RNA helicase 51 OS=Arabidopsis 
thaliana OX=3702 GN=RH51 PE=2 SV=1
Length=568

 Score = 60.8 bits (146),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 47/153 (31%), Positives = 79/153 (52%), Gaps = 12/153 (8%)

Query  281  KFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
            +F P N    +++ P+RELA QT N  ++  K+         ++IGG   R +   + +G
Sbjct  155  RFSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQT---VSMVIGGNNRRSEAQRIASG  211

Query  340  VDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
             ++V+ TPGR LD L +T       ++ LV+DEAD +L + + + +N++   +P      
Sbjct  212  SNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILP------  265

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL  431
            K  Q  + SAT  S  VK L+   +  P  VD+
Sbjct  266  KTRQTALFSATQTS-KVKDLARVSLTSPVHVDV  297


 Score = 59.7 bits (143),  Expect = 7e-08, Method: Compositional matrix adjust.
 Identities = 27/66 (41%), Positives = 37/66 (56%), Gaps = 0/66 (0%)

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            +HG    + R +    F K     L+CTDVAARG+DI  V ++I    PD+   Y+HR+G
Sbjct  364  IHGGMDQNRRTKTFFDFMKAKKGILLCTDVAARGLDIPSVDWIIQYDPPDKPTEYIHRVG  423

Query  605  RVGRAE  610
            R  R E
Sbjct  424  RTARGE  429


 Score = 53.1 bits (126),  Expect = 6e-06, Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 0/64 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F  + +  + + A++EM +   T IQA SI  +L G DVL AA TGSGKT AF IP ++
Sbjct  90   TFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVE  149

Query  63   IVYE  66
            ++++
Sbjct  150  LLFK  153


>sp|A6ZSB3|DBP6_YEAS7 ATP-dependent RNA helicase DBP6 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DBP6 PE=3 SV=1
Length=629

 Score = 60.8 bits (146),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 0/63 (0%)

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  LI TD+ +RGIDI+ +  VIN   P   Q YVHR+GR  RA  +G A +L+    E+
Sbjct  519  ITILITTDIMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARANELGSAYNLLVGRGER  578

Query  626  VWY  628
             ++
Sbjct  579  TFF  581


 Score = 47.0 bits (110),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 19/40 (48%), Positives = 30/40 (75%), Gaps = 0/40 (0%)

Query  341  DIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGY  380
            DI++ TPGRL D ++   +NL  ++FL++DEAD LL+Q +
Sbjct  312  DILITTPGRLVDHLNMKSINLKNLKFLIIDEADRLLNQSF  351


 Score = 39.3 bits (90),  Expect = 0.13, Method: Compositional matrix adjust.
 Identities = 15/27 (56%), Positives = 23/27 (85%), Gaps = 0/27 (0%)

Query  40   GDVLMAAETGSGKTGAFSIPVIQIVYE  66
            GD+L+ A TGSGKT A+SIP++Q +++
Sbjct  228  GDILVNAATGSGKTLAYSIPIVQTLFK  254


>sp|P53734|DBP6_YEAST ATP-dependent RNA helicase DBP6 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP6 
PE=1 SV=1
Length=629

 Score = 60.8 bits (146),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 0/63 (0%)

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  LI TD+ +RGIDI+ +  VIN   P   Q YVHR+GR  RA  +G A +L+    E+
Sbjct  519  ITILITTDIMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARANELGSAYNLLVGRGER  578

Query  626  VWY  628
             ++
Sbjct  579  TFF  581


 Score = 47.0 bits (110),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 19/40 (48%), Positives = 30/40 (75%), Gaps = 0/40 (0%)

Query  341  DIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGY  380
            DI++ TPGRL D ++   +NL  ++FL++DEAD LL+Q +
Sbjct  312  DILITTPGRLVDHLNMKSINLKNLKFLIIDEADRLLNQSF  351


 Score = 39.3 bits (90),  Expect = 0.13, Method: Compositional matrix adjust.
 Identities = 15/27 (56%), Positives = 23/27 (85%), Gaps = 0/27 (0%)

Query  40   GDVLMAAETGSGKTGAFSIPVIQIVYE  66
            GD+L+ A TGSGKT A+SIP++Q +++
Sbjct  228  GDILVNAATGSGKTLAYSIPIVQTLFK  254


>sp|A3LV40|DBP9_PICST ATP-dependent RNA helicase DBP9 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DBP9 PE=3 SV=1
Length=581

 Score = 60.5 bits (145),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 81/153 (53%), Gaps = 10/153 (7%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            K++I+ P+REL+ Q L  +++   Y +N ++  + +   ++ +   S+L N  +I++ TP
Sbjct  92   KSIILVPTRELSNQVLQFVEKLLVYSNN-RINAINLSANLSDQVVNSLLMNKPEIIISTP  150

Query  348  GRLDDLVSTGK----LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
             +L  ++        ++LS VR L +DE D +LS GY + + ++   +P      K LQ 
Sbjct  151  AKLIQVLEKNANKDLIDLSTVRNLTIDEVDLVLSYGYLEDLQKLETYLPI----KKNLQT  206

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDS  436
             + SAT++  D+  L  +    P  + L  E+S
Sbjct  207  FLMSATVND-DLNDLKTRFCSRPAILKLNDEES  238


 Score = 50.1 bits (118),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 35/50 (70%), Gaps = 1/50 (2%)

Query  13  IAQAVEEMDWLLPTDIQAESIPLILG-GGDVLMAAETGSGKTGAFSIPVI  61
           + QA++++ +  PT IQA +IPL L    D++  A TGSGKTGA+ IP+I
Sbjct  26  LVQAIDQLGFEHPTLIQASAIPLALEEKRDIIAKASTGSGKTGAYVIPII  75


 Score = 50.1 bits (118),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 0/50 (0%)

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
             +RG+D   V  V+N  LP   + Y+HRIGR  RA + G+A+S V   KE
Sbjct  371  VSRGVDFRNVACVLNFDLPTTSKAYIHRIGRTARAGKAGMALSFVLPIKE  420


>sp|P75335|Y443_MYCPN Probable ATP-dependent RNA helicase MG308 
homolog OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129 
/ Subtype 1) OX=272634 GN=MPN_443 PE=3 SV=1
Length=409

 Score = 59.7 bits (143),  Expect = 5e-08, Method: Compositional matrix adjust.
 Identities = 35/110 (32%), Positives = 46/110 (42%), Gaps = 9/110 (8%)

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
            H  +Q ++FC        L               +Q S   LHG   P+ERK        
Sbjct  214  HHNEQVLVFCSNAKSLKQLTSLLAH---------NQLSFKSLHGQLTPNERKHIFTSAAN  264

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
              VR L+ +D+ ARGID+     VI+  LP     Y+HR GRV R    G
Sbjct  265  NTVRVLVVSDLLARGIDLPHFSVVISWDLPLVDSFYIHRSGRVARFNSWG  314


>sp|Q4P9E5|SPB4_USTMA ATP-dependent rRNA helicase SPB4 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=SPB4 PE=3 
SV=2
Length=767

 Score = 60.5 bits (145),  Expect = 5e-08, Method: Compositional matrix adjust.
 Identities = 33/98 (34%), Positives = 48/98 (49%), Gaps = 8/98 (8%)

Query  536  KGHQFSCVCLHGDRKPHERKQNLERFKKGDV--------RFLICTDVAARGIDIHGVPYV  587
            + H+     LHG + P +RK   + F               L CTDVAARG+D+  V  V
Sbjct  375  RQHRVKLYALHGKQTPSKRKSMFDTFVASTALDSGASGASVLFCTDVAARGLDLPDVDVV  434

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +    P + + + HR GR  RA R G AI ++ T +E+
Sbjct  435  VQYDPPTDPKVFSHRCGRTARAGRNGRAIVMLHTGREQ  472


 Score = 56.6 bits (135),  Expect = 8e-07, Method: Compositional matrix adjust.
 Identities = 30/80 (38%), Positives = 49/80 (61%), Gaps = 3/80 (4%)

Query  322  LIIGG---VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQ  378
            L++GG       D   + ++G DI+VGTPGRL++L+S   +  S +  LVLDEAD LL  
Sbjct  188  LVVGGSKCTPLDDYRQLRDSGADILVGTPGRLEELLSKKGVKKSSLEVLVLDEADRLLDL  247

Query  379  GYSDFINRMHNQIPQVTSDG  398
            G+++ + R+ + +P+    G
Sbjct  248  GFTENLRRILSLLPKQRRTG  267


 Score = 44.7 bits (104),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 29/39 (74%), Gaps = 0/39 (0%)

Query  26  TDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIV  64
           T +QA +IPL +   DV++ A TGSGKT AF IPV++++
Sbjct  52  TPVQASTIPLFVSHKDVVVEAVTGSGKTLAFVIPVLEML  90


>sp|A2RA55|DBP7_ASPNC ATP-dependent RNA helicase dbp7 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=dbp7 PE=3 SV=1
Length=771

 Score = 60.1 bits (144),  Expect = 5e-08, Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 87/174 (50%), Gaps = 36/174 (21%)

Query  289  ALIVEPSRELAEQ---TLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            A+++ P+REL +Q    L  + +   +I         +IGG   + + + L  G++I+V 
Sbjct  234  AIVLAPTRELCKQIAVVLEGLLRCAHWIVAG-----TVIGGEKKKSEKARLRKGLNILVA  288

Query  346  TPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGY----SDFINRMH-----NQIPQVT  395
            TPGRL D L +T  L++S VR+LVLDE D L+  G+    +  I ++      ++IP + 
Sbjct  289  TPGRLADHLENTQALDVSNVRWLVLDEGDRLMELGFEKELAGIIQKLDARQRPSRIPGIP  348

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN  449
            +   +   I+CSATL    V+KL              GE S+ D VH    P +
Sbjct  349  A---KRTTILCSATL-KMTVQKL--------------GEISLKDAVHIQADPAD  384


 Score = 50.4 bits (119),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query  545  LHGDRKPHERKQNLERFKKG-DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI  603
            LHG    H R   L  F +  +   LICTDVA+RG+D+  V  V+        ++++HRI
Sbjct  509  LHGSLPQHVRTATLGAFARNREPSVLICTDVASRGLDLPNVDLVVEYDPAFSAEDHLHRI  568

Query  604  GRVGRAERMGLAI  616
            GR  R  R G A+
Sbjct  569  GRTARLGRDGRAL  581


 Score = 42.0 bits (97),  Expect = 0.024, Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (3%)

Query  4    FSEMGV-MPEIAQAVEEMDWLLPTDIQAESIPLILGG-GDVLMAAETGSGKTGAFSIPVI  61
            F+ +G+  P  A  + +++   PT IQ  SI  +L    D  + AETGSGKT A+ +P++
Sbjct  148  FTNLGLSAPLAAHLLTKLEVKAPTAIQKASITQLLKEESDAFIQAETGSGKTMAYLLPLV  207

Query  62   QIVYETLKDQQEGKKGK  78
            Q +     +Q++ ++G+
Sbjct  208  QRIMTISLNQKKREEGE  224


>sp|Q0DWT8|RH1_ORYSJ DEAD-box ATP-dependent RNA helicase 1 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os02g0795900 PE=2 SV=1
Length=521

 Score = 59.7 bits (143),  Expect = 6e-08, Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 1/114 (1%)

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
            R++ L+ FK+G +  LI TD  ARGI I G+ YVIN  +P   + Y+HR GR  RA   G
Sbjct  382  RRKTLDAFKEGKIDVLIGTDRMARGIHIDGLRYVINYDMPPYVKTYIHRAGRTARAGESG  441

Query  614  LAISLVATEKEKVWYHVC-SSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHL  666
               + +   + K +  +   +    C    L E+   T+       L ++EE L
Sbjct  442  SCFTFLRKHEVKAFDKMLKKADNSSCSLHSLPEESVETLRPVFSSALKKLEESL  495


 Score = 43.1 bits (100),  Expect = 0.008, Method: Compositional matrix adjust.
 Identities = 20/49 (41%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query  337  ENGVDIVVGTPGRLDDLVSTGK-LNLSQVRFLVLDEADGLLSQGYSDFI  384
            +  VDI+V TPGRL D +S  K  +L  +++LV+DE D +L + Y  ++
Sbjct  179  QTKVDILVATPGRLMDHISMTKGFSLEHLQYLVVDETDRMLREAYQSWL  227


>sp|A6RCJ9|MRH4_AJECN ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Ajellomyces capsulatus (strain NAm1 / WU24) OX=2059318 
GN=MRH4 PE=3 SV=1
Length=624

 Score = 60.1 bits (144),  Expect = 6e-08, Method: Compositional matrix adjust.
 Identities = 44/127 (35%), Positives = 62/127 (49%), Gaps = 12/127 (9%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN--GVDIVV  344
            P+A+I+ P+ EL EQ     KQ        K R   I      R   + L N  G+DI++
Sbjct  292  PRAIILVPTAELVEQVGKLAKQLSHTA---KFRSATISSVYTPRRITNSLFNPAGIDILI  348

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI-NRMHNQIPQVTSDGKRLQV  403
             TP  L  +  T    LS+V  LV+DEAD LL + +S    + M    P +T      Q+
Sbjct  349  STPHLLTSIAKTNPYILSRVAHLVIDEADSLLDKSFSPLTYSIMEKTAPSLT------QL  402

Query  404  IVCSATL  410
            I+CSAT+
Sbjct  403  ILCSATI  409


>sp|Q944S1|RH22_ARATH DEAD-box ATP-dependent RNA helicase 22 OS=Arabidopsis 
thaliana OX=3702 GN=RH22 PE=2 SV=1
Length=581

 Score = 59.7 bits (143),  Expect = 6e-08, Method: Compositional matrix adjust.
 Identities = 91/386 (24%), Positives = 142/386 (37%), Gaps = 80/386 (21%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            +LI+ P+  L EQ +  +        NP LR   + G     D+L       DI+V TP 
Sbjct  165  SLILCPNVMLCEQVVRMVNGLVDEDGNPLLRVEAVCGSQGWPDRLP------DIIVSTPA  218

Query  349  RLDDLVSTGKLN----LSQVRFLVLDEADGLLSQGYSD----FINRMHNQIPQVTS----  396
             L + +   +      L  V+++V DEAD LL   + +     IN +     QV+     
Sbjct  219  ALLNNIEPKRNRRLEFLRCVKYVVFDEADMLLCGSFQNQIIRLINMLRFDEKQVSRLAKS  278

Query  397  --------DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
                    D    Q+ + +     FD   +SE+         L     +P     V    
Sbjct  279  NLGRPMEIDASVPQIDLENEDDAEFDEGSISEEEDEEEEEEYLDDIAQMPS----VEAEA  334

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRP--------------------------GANSP  482
               T + W R+ K + R+        T P                            NSP
Sbjct  335  GSDTKKGWRRVRKIYTRSKQYIFIAATLPVNGKKTAGGILKHMFQDAVWVSGNFLHRNSP  394

Query  483  EM---WSEAIKILKGEYAVRAIKEHKM---DQAIIFCRT----KIDCDNLEQYFIQQGGG  532
             +   W E     + +  + A+K +     ++ ++F  T    +   D LE+  IQ    
Sbjct  395  RLKQKWVEVTVDSQVDALIEAVKNNNNTNTERTMVFANTVEAVEAVADILEKASIQ----  450

Query  533  PDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTL  592
                     C   H + K  ER   L  F++    F +CTD AARG+D+  V +VI    
Sbjct  451  ---------CYRYHKNHKLDERANILADFRETGGVF-VCTDAAARGVDVPNVSHVIQADF  500

Query  593  PDEKQNYVHRIGRVGRAERMGLAISL  618
                 +++HRIGR  RA + G   SL
Sbjct  501  ASSAVDFLHRIGRTARAGQYGTVTSL  526


 Score = 48.1 bits (113),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 25/70 (36%), Positives = 41/70 (59%), Gaps = 0/70 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            ++  +G+   ++ A+ +  +  P+  QA  IP IL G DV++AAETGSGKT  +  P+I 
Sbjct  81   SWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIID  140

Query  63   IVYETLKDQQ  72
             +  T  D +
Sbjct  141  QLTNTALDSE  150


>sp|Q9VD51|DDX18_DROME Probable ATP-dependent RNA helicase pitchoune 
OS=Drosophila melanogaster OX=7227 GN=pit PE=2 SV=2
Length=680

 Score = 59.7 bits (143),  Expect = 7e-08, Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 0/67 (0%)

Query  542  CVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH  601
               +HG +K  +R     +F   +   L+CTDVAARG+DI  V +++    PD+ + Y+H
Sbjct  460  VTSIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGLDIPQVDWIVQYDPPDDPREYIH  519

Query  602  RIGRVGR  608
            R+GR  R
Sbjct  520  RVGRTAR  526


 Score = 57.4 bits (137),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 39/135 (29%), Positives = 73/135 (54%), Gaps = 11/135 (8%)

Query  277  VTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
            + + +F+P N    +I+ P+REL+ QT   +K+   +  +      L++GG   + +   
Sbjct  249  INKLRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHT---YGLVMGGSNRQVESEK  305

Query  336  LENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV  394
            L  G++I+V TPGR LD L ++       ++ L++DE D +L  G+ + + ++ N +P  
Sbjct  306  LGKGINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLP--  363

Query  395  TSDGKRLQVIVCSAT  409
                KR Q ++ SAT
Sbjct  364  ----KRRQTMLFSAT  374


 Score = 48.9 bits (115),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 38/50 (76%), Gaps = 0/50 (0%)

Query  15   QAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIV  64
            +A++EM +   T+IQ++S+  +L G D++ AA+TGSGKT AF IP ++++
Sbjct  200  RAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELI  249


>sp|A3GG51|MAK5_PICST ATP-dependent RNA helicase MAK5 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=MAK5 PE=3 SV=2
Length=836

 Score = 59.7 bits (143),  Expect = 7e-08, Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 68/145 (47%), Gaps = 12/145 (8%)

Query  542  CVCLHGDRKPHERKQNLERFKKG----DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQ  597
               +H      +R + LERF+K     D   LI +DVAARG+DI  + +V +  LP    
Sbjct  544  AFAIHSSMIQKQRLRALERFQKASEKNDTAVLIASDVAARGLDIPNIDHVAHYHLPRSAD  603

Query  598  NYVHRIGRVGRAERMGLAISLVATEK-----EKVWYHVCSSRGKGCYNTRLKEDGGCTIW  652
             Y+HR GR  RA + G+++   + ++      K+   V ++  KG    RL       + 
Sbjct  604  VYIHRSGRTARAGKEGVSVMFCSPQEASGPLRKLRRLVANNSTKGG---RLNMHNDVKLL  660

Query  653  YNEMQLLSEIEEHLNCTISQVEPDI  677
              EM L+S+++  +       + DI
Sbjct  661  PIEMDLVSQLKPRVIIASKLADADI  685


 Score = 57.8 bits (138),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 70/142 (49%), Gaps = 8/142 (6%)

Query  276  QVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
            Q  Q K + N P  +I  P+RELA Q ++++    KY        + I GG++ + Q  +
Sbjct  293  QNRQKKII-NHPTGIIFAPTRELAHQVVSHLNSLAKYSPLSTNGIVSITGGLSIQKQERL  351

Query  336  LENGVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQG----YSDFINRMH  388
            L +G  I+V TPGR+ +L+   +     L+    +VLDEAD LL  G    +   ++   
Sbjct  352  LSHGPGIIVATPGRILELLQKDEDLTKRLASTDIIVLDEADRLLQDGHFEEFETILDLFR  411

Query  389  NQIPQVTSDGKRLQVIVCSATL  410
               P+  +   + Q +V SAT 
Sbjct  412  KNRPKNKTFPWKWQTLVFSATF  433


 Score = 42.7 bits (99),  Expect = 0.015, Method: Compositional matrix adjust.
 Identities = 20/38 (53%), Positives = 27/38 (71%), Gaps = 0/38 (0%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            PT IQ ++IPL   G DV+  A TGSGKT A+ IP+++
Sbjct  245  PTPIQKKTIPLAAEGKDVVGKAITGSGKTLAYGIPILE  282


>sp|Q6CN92|SPB4_KLULA ATP-dependent rRNA helicase SPB4 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / 
NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=SPB4 PE=3 SV=1
Length=596

 Score = 58.9 bits (141),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 72/142 (51%), Gaps = 11/142 (8%)

Query  276  QVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI-DNP-KLRELLIIGGVAA--RD  331
            +    KF  +   +LI+ P+RELA Q  + I+ F KY  DN   +R  L++G  +A  RD
Sbjct  73   EANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRD  132

Query  332  QL-SVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ  390
             + S  +N   I+VGTPGR+ D +    +  +    +VLDEAD LL   +   +  +   
Sbjct  133  DINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKM  192

Query  391  IPQVTSDGKRLQVIVCSATLHS  412
            +P+    G      + SAT+ S
Sbjct  193  LPKQRRTG------LFSATIES  208


 Score = 58.2 bits (139),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 32/83 (39%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query  544  CLHGDRKPHERKQNLERFKKGDV-RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHR  602
             LHG  +   R + L+ F        L  TDVAARGIDI  V  VI +  P +   ++HR
Sbjct  298  SLHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHR  357

Query  603  IGRVGRAERMGLAISLVATEKEK  625
             GR GRA R+G A+  +   +E+
Sbjct  358  CGRTGRANRIGKALVFLNEGREE  380


 Score = 51.2 bits (121),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 35/54 (65%), Gaps = 0/54 (0%)

Query  9   VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           + P I  A+E M +   T +QA +IPL  G  DV++ + TGSGKT AF IP+++
Sbjct  14  IQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILE  67


>sp|Q0JFN7|RH58_ORYSJ DEAD-box ATP-dependent RNA helicase 58, 
chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0970600 
PE=2 SV=2
Length=438

 Score = 58.5 bits (140),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 77/349 (22%), Positives = 140/349 (40%), Gaps = 61/349 (17%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII-GGVAARDQLSVLENGVDIVVGT  346
            +AL+V P+REL  Q    + +  + +       + ++ GG+  R +  V      I+V T
Sbjct  111  QALVVVPTRELGMQ----VTKVARILAAKACTVMALLDGGMLRRQKSWVKAEPPAIIVAT  166

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
               L  ++     +L  +R LV+DE D +   G S  ++ +   +   ++   R Q I  
Sbjct  167  VASLCQMIEKRAFSLQSMRVLVIDEVDFIF--GSSKQVSSLRKILTSYSAASSR-QTIFA  223

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLG------  460
            SA++   + + + + + H   W          D VH  V PV P    L  +        
Sbjct  224  SASIPQHN-RFVHDCVQH--KWTK-------TDVVHVHVNPVQPMPSHLQHKYAICSKKE  273

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE-HKMDQAII--FCRTKI  517
            + H+    +  KD  + G            I   E + ++ K  H     ++  F RT  
Sbjct  274  RLHVLLSLLE-KDAPKSGI-----------IFVAEQSEKSKKAGHPPSTTVVVEFLRTTY  321

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
               +LE   +++    + +   F+ V                   KG    L+ TD+A+R
Sbjct  322  -MGSLEVLLLEEDMNFNARATSFTEV-------------------KGKGFLLVSTDIASR  361

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA--ERMGLAISLVATEKE  624
            G D+    ++ N  LP    +Y+HR GR GR    ++  +++ + TE E
Sbjct  362  GFDLPQTSHIYNFDLPKTAIDYLHRAGRTGREPFSKLACSVTTLITEDE  410


 Score = 52.4 bits (124),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 23/58 (40%), Positives = 41/58 (71%), Gaps = 1/58 (2%)

Query  8    GVMPE-IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIV  64
            G +PE + Q  EE+ +++PT++Q +S+P++L G D ++ A+TGSGKT A+ + V   +
Sbjct  46   GRVPEHVLQRAEEVGYVVPTEVQEQSLPVLLSGQDCILHAQTGSGKTLAYLLSVFSAI  103


>sp|Q7RZH4|MAK5_NEUCR ATP-dependent RNA helicase mak-5 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=mak-5 PE=3 SV=1
Length=805

 Score = 58.9 bits (141),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 51/84 (61%), Gaps = 3/84 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M+ +  + + P +  ++ ++ +  PT IQ+++IP I+ G DV+  A TGSGKT AF IPV
Sbjct  208  MSEWVPLDLSPRMISSIAKLRFSKPTVIQSKAIPEIMAGHDVIGKASTGSGKTLAFGIPV  267

Query  61   IQ---IVYETLKDQQEGKKGKTTI  81
            I+      ET K  +E +KG T +
Sbjct  268  IESWLSAAETRKQNKEERKGATAL  291


 Score = 57.4 bits (137),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 8/82 (10%)

Query  545  LHGDRKPHERKQNLERFK--------KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEK  596
            LH       R ++++RFK         G    L+ TDVAARG+DI  V  VI+  +P   
Sbjct  550  LHSGMIQQARLRSIDRFKANEGAKKKNGSAAILVATDVAARGLDIPDVDLVIHYHVPRAA  609

Query  597  QNYVHRIGRVGRAERMGLAISL  618
            ++YVHR GR  RA   G +I L
Sbjct  610  EDYVHRSGRTARASNSGTSILL  631


 Score = 55.8 bits (133),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 67/119 (56%), Gaps = 7/119 (6%)

Query  266  IVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDN-PKLRELLII  324
            +++S  S      Q K       ALI+ P+RELA+Q  ++++   K +   P +    ++
Sbjct  267  VIESWLSAAETRKQNKEERKGATALILSPTRELAQQIRDHLQALCKGLPTAPYI--CSVL  324

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVR---FLVLDEADGLLSQGY  380
            GG+A + Q   L+   DIV+ TPGR+ +++S+    L+ +R   FLVLDEAD LL  G+
Sbjct  325  GGMAVQKQKRQLQVA-DIVIATPGRMWEVMSSDNSVLASLRNISFLVLDEADRLLKDGH  382


>sp|B0LPN4|RYR2_RAT Ryanodine receptor 2 OS=Rattus norvegicus 
OX=10116 GN=Ryr2 PE=1 SV=2
Length=4953

 Score = 58.5 bits (140),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 83/193 (43%), Gaps = 12/193 (6%)

Query  62    QIVYETLKDQQEGKKGKTTIKTGASVL--NKWQMNPYDRGSAFAIGSDGLCCQSREVKEW  119
             ++V  TL D +  K  K +++     L    + +   D+  A       +C  + E    
Sbjct  1024  RLVPYTLLDDRTKKSNKDSLREAVRTLLGYGYHLEAPDQDHA---SRAEVCSGTGERFRI  1080

Query  120   HGCRATKGLMKGKHYYEVSCHDQGLCRVGWST--MQASLDLGTDKFGFGFGGTGKKSHNK  177
                  T  +  G+ Y+E      G  RVGWS    Q  L+LG+D+  F F G   +  ++
Sbjct  1081  FRAEKTYAVKAGRWYFEFEAVTAGDMRVGWSRPGCQPDLELGSDERAFAFDGFKAQRWHQ  1140

Query  178   QFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGK----DLGLAFEIPPHMKNQALFPACVL  233
               ++YG  +   D +GC +D+++  + F+ NG+    D G               P C L
Sbjct  1141  GNEHYGRSWQAGDVVGCMVDMNEHTMMFTLNGEILLDDSGSELAFKDFDVGDGFIPVCSL  1200

Query  234   KNAEL-KFNFGEE  245
               A++ + NFG++
Sbjct  1201  GVAQVGRMNFGKD  1213


>sp|Q61R02|DDX55_CAEBR Probable ATP-dependent RNA helicase DDX55 
homolog OS=Caenorhabditis briggsae OX=6238 GN=CBG06798 PE=3 
SV=1
Length=577

 Score = 58.2 bits (139),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 39/127 (31%), Positives = 64/127 (50%), Gaps = 8/127 (6%)

Query  277  VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL  336
            +   +  PN   ALI+ PSREL  Q +N IK F + +   KL    + GG      + + 
Sbjct  71   IQNARLQPNEIGALILSPSRELCSQIVNVIKPFAEKM---KLNVETVTGGQKVDKNIKMF  127

Query  337  EN-GVDIVVGTPGRLDDLVSTGKLNLSQ----VRFLVLDEADGLLSQGYSDFINRMHNQI  391
            +N  ++I+V TPGRL  ++   K  +++    V+ LV+DEAD      + D +  + + I
Sbjct  128  KNKDINILVATPGRLFQIIQHEKTMIARAMKGVQLLVIDEADRFNEIQFEDHMREILSCI  187

Query  392  PQVTSDG  398
            P+    G
Sbjct  188  PKQRRTG  194


 Score = 56.2 bits (134),  Expect = 8e-07, Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query  551  PHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAE  610
            PH R   ++ F +     +I TDV ARGIDI  + +VI   LP     +VHR GR  R  
Sbjct  296  PH-RAAQIKAFSESTNGVMISTDVMARGIDITDIDWVIQYDLPKHSSWFVHRAGRTARCG  354

Query  611  RMGLAISLVATEK  623
            R G A+ L+ATE+
Sbjct  355  RDGNALILIATEQ  367


 Score = 35.0 bits (79),  Expect = 2.8, Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 34/54 (63%), Gaps = 1/54 (2%)

Query  11  PEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIV  64
           PEI +  ++  +   TD+Q  +   +L   DV++ + TGSGKT AF +P+++++
Sbjct  19  PEILEVFDK-SYKSFTDVQVLAGTHLLNLSDVVVESPTGSGKTLAFVLPMMRMI  71


>sp|P73421|RECQ_SYNY3 ATP-dependent DNA helicase RecQ OS=Synechocystis 
sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=recQ PE=3 
SV=1
Length=478

 Score = 57.8 bits (138),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 34/137 (25%), Positives = 65/137 (47%), Gaps = 14/137 (10%)

Query  489  IKILKGEYAVRA-----IKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCV  543
            +K++  EY  R      + +H  +  +I+ RT+    NL Q+  ++G         F   
Sbjct  217  VKMVLSEYCRRQQLRRFLLKHLQESGLIYVRTRTMAINLAQWLQERG---------FDSE  267

Query  544  CLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI  603
              HG   PH+R+Q  +++  G +  ++CT+    GID     +V++   P    +Y+  +
Sbjct  268  AYHGGLGPHQRRQLEQKWLTGQISSVVCTNAFGLGIDKPDTRWVLHYQAPLMLMDYLQEV  327

Query  604  GRVGRAERMGLAISLVA  620
            GR GR  +    ++LV+
Sbjct  328  GRAGRDLQPAECLTLVS  344


>sp|Q3E9C3|RH58_ARATH DEAD-box ATP-dependent RNA helicase 58, 
chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RH58 PE=2 SV=1
Length=472

 Score = 57.4 bits (137),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 83/353 (24%), Positives = 136/353 (39%), Gaps = 55/353 (16%)

Query  288  KALIVEPSRELAEQTLNNIKQF--KKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVV  344
            +A+IV P+REL  Q     +    K  ID      + ++ G   R   S L+     I+V
Sbjct  146  QAVIVVPTRELGMQVTKVARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKAEPPAILV  205

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             T   L  ++      +  VR LV+DE D L     S  +  +   +   +S  KR Q +
Sbjct  206  ATVASLCHMLEKHIFRIDSVRVLVVDEVDFLFYS--SKQVGSVRKLLTSFSSCDKR-QTV  262

Query  405  VCSATL--HSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
              SA++  H   V    ++      W          D VH  V  + P    L  R    
Sbjct  263  FASASIPQHKHFVHDCIQQ-----KWTK-------RDVVHVHVSAIMPMPLCLLHRFVMC  310

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFC-----RTKI  517
                     K N                  K +  +  ++    + AIIF      ++K 
Sbjct  311  E--------KTN------------------KHQVLLALLESDAPESAIIFVGEQSEKSKK  344

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
              ++     + +      KG     + L GD   + R  +L   ++G    L+ TD+AAR
Sbjct  345  AGNDPSTTLLMEFLKTSYKG-SLEILLLEGDMNFNSRAASLTEIRQGGGFLLVSTDIAAR  403

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGR---AERMGLAISLVATEKEKVW  627
            GID+    ++ N  LP    +Y+HR GR GR   ++R  +  +L+ +E+  V 
Sbjct  404  GIDLPETTHIFNFDLPQTVTDYLHRAGRAGRKPFSDRKCIVANLITSEERFVL  456


 Score = 50.1 bits (118),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 22/58 (38%), Positives = 38/58 (66%), Gaps = 1/58 (2%)

Query  8    GVMPE-IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIV  64
            G +PE I   +EE+ ++ PTDIQ E++P +  G D ++ A+TGSGKT  + + +  ++
Sbjct  81   GFVPEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLI  138


>sp|A5DUB2|MAK5_LODEL ATP-dependent RNA helicase MAK5 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=MAK5 PE=3 SV=1
Length=855

 Score = 57.8 bits (138),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 8/129 (6%)

Query  542  CVCLHGDRKPHERKQNLERFK----KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQ  597
               +H      +R ++LERFK    K     L+ +DVAARG+DI  + +V +  LP    
Sbjct  551  AFAIHSSMIQKQRLRSLERFKDASEKNQTAVLVASDVAARGLDIPNIDHVAHYHLPRSAD  610

Query  598  NYVHRIGRVGRAERMGLAISLVATEKE----KVWYHVCSSRGKGCYNTRLKEDGGCTIWY  653
             Y+HR GR  RA + G+++   + ++     +    + +S      N ++       +  
Sbjct  611  VYIHRSGRTARAGKEGVSVMFCSPQEASGPLRKLRKLVASNAANNKNQKINVHSDVKLLP  670

Query  654  NEMQLLSEI  662
             EM L+S++
Sbjct  671  VEMDLVSQL  679


 Score = 53.9 bits (128),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 53/99 (54%), Gaps = 3/99 (3%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P  +I  P+RELA Q ++++ +  +Y        + + GG++ + Q  +L  G  I+V
Sbjct  298  NHPTGIIFAPTRELAHQVVDHLNKIAQYSPLSTKGIVSVTGGLSIQKQERLLSFGPGIIV  357

Query  345  GTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGY  380
             TPGR+ +L    +     LS    +VLDEAD LL  G+
Sbjct  358  ATPGRMLELCQNDQELVKRLSMTDIIVLDEADRLLQDGH  396


 Score = 52.4 bits (124),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 37/63 (59%), Gaps = 0/63 (0%)

Query  6    EMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVY  65
            E  + P I   +  M +  PT IQ  +IPL L G DV+  A TGSGKT A+ IP+++   
Sbjct  223  ETCLSPYILNGLSNMKFTTPTPIQKRTIPLALEGKDVIGKATTGSGKTLAYGIPILEKYI  282

Query  66   ETL  68
            ++L
Sbjct  283  QSL  285


>sp|E9Q401|RYR2_MOUSE Ryanodine receptor 2 OS=Mus musculus OX=10090 
GN=Ryr2 PE=1 SV=1
Length=4966

 Score = 57.8 bits (138),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 82/193 (42%), Gaps = 12/193 (6%)

Query  62    QIVYETLKDQQEGKKGKTTIKTGASVL--NKWQMNPYDRGSAFAIGSDGLCCQSREVKEW  119
             ++V  TL D +  K  K +++     L    + +   D+  A       +C  + E    
Sbjct  1031  RLVPYTLLDDRTKKSNKDSLREAVRTLLGYGYHLEAPDQDHA---SRAEVCSGTGERFRI  1087

Query  120   HGCRATKGLMKGKHYYEVSCHDQGLCRVGWST--MQASLDLGTDKFGFGFGGTGKKSHNK  177
                  T  +  G+ Y+E      G  RVGWS    Q  L+LG+D   F F G   +  ++
Sbjct  1088  FRAEKTYAVKAGRWYFEFEAVTAGDMRVGWSRPGCQPDLELGSDDRAFAFDGFKAQRWHQ  1147

Query  178   QFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGK----DLGLAFEIPPHMKNQALFPACVL  233
               ++YG  +   D +GC +D+++  + F+ NG+    D G               P C L
Sbjct  1148  GNEHYGRSWQAGDVVGCMVDMNEHTMMFTLNGEILLDDSGSELAFKDFDVGDGFIPVCSL  1207

Query  234   KNAEL-KFNFGEE  245
               A++ + NFG++
Sbjct  1208  GVAQVGRMNFGKD  1220


>sp|P30957|RYR2_RABIT Ryanodine receptor 2 OS=Oryctolagus cuniculus 
OX=9986 GN=RYR2 PE=1 SV=3
Length=4969

 Score = 57.4 bits (137),  Expect = 5e-07, Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 82/191 (43%), Gaps = 8/191 (4%)

Query  62    QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHG  121
             ++V  TL D +  K  K +++     L  +  N        A  ++ +C  + E      
Sbjct  1031  RLVPYTLLDDRTKKSNKDSLREAVRTLLGYGYNLEAPDQDHAARAE-VCSGTGERFRIFR  1089

Query  122   CRATKGLMKGKHYYEVSCHDQGLCRVGWST--MQASLDLGTDKFGFGFGGTGKKSHNKQF  179
                T  +  G+ Y+E      G  RVGWS    Q   +LG+D+  F F G   +  ++  
Sbjct  1090  AEKTYAVKAGRWYFEFEAVTSGDMRVGWSRPGCQPDQELGSDERAFAFDGFKAQRWHQGN  1149

Query  180   DNYGEEFTMHDTIGCYLDIDKGHVKFSKNGK----DLGLAFEIPPHMKNQALFPACVLKN  235
             ++YG  +   D +GC +D+++  + F+ NG+    D G               P C L  
Sbjct  1150  EHYGRSWQAGDVVGCMVDMNEHTMMFTLNGEILLDDSGSELAFKDFDVGDGFIPVCSLGV  1209

Query  236   AEL-KFNFGEE  245
             A++ + NFG++
Sbjct  1210  AQVGRMNFGKD  1220


>sp|Q6FUA6|DBP9_CANGA ATP-dependent RNA helicase DBP9 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP9 PE=3 SV=1
Length=595

 Score = 57.0 bits (136),  Expect = 5e-07, Method: Compositional matrix adjust.
 Identities = 38/148 (26%), Positives = 80/148 (54%), Gaps = 8/148 (5%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR  349
            +I+ P+REL +Q    +++   Y  +  ++ L +   ++     ++L    +I+VGTP +
Sbjct  95   IIMVPTRELTQQVTAVLEKLIHYC-SKDIKVLNLAADLSTSVLNTLLSENPEIIVGTPSK  153

Query  350  LDDLV--STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            + +++  +T  + +  ++FLV+DE D +L+ GY D ++++   +P      K LQ  + S
Sbjct  154  ILNILERNTDTVGIDDLKFLVIDEVDLVLTFGYQDDLDKIAEYLPL----KKNLQTFLMS  209

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGED  435
            ATL S D++ L +K    P  +    ++
Sbjct  210  ATL-SDDIQSLKQKYCRSPAIIKFNDDE  236


 Score = 49.7 bits (117),  Expect = 8e-05, Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 0/50 (0%)

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
             +RG+D   V  V+N  LP   + YVHR+GR  RA + G AIS V   KE
Sbjct  384  VSRGVDFKNVACVVNFDLPTTAKAYVHRVGRTARAGKSGTAISFVVPLKE  433


 Score = 47.0 bits (110),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 27/72 (38%), Positives = 40/72 (56%), Gaps = 1/72 (1%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILG-GGDVLMAAETGSGKTGAFSIPVIQ  62
           F    +   + QA++   +  PT IQ+ +IPL L    D++  A TGSGKT A+ IPVIQ
Sbjct  16  FESFKLDARLLQAIKGSGFTHPTLIQSHAIPLALEEKRDIIAKAATGSGKTLAYLIPVIQ  75

Query  63  IVYETLKDQQEG  74
            + +  K +  G
Sbjct  76  TILDYKKSRTNG  87


>sp|Q5A4P9|DBP9_CANAL ATP-dependent RNA helicase DBP9 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP9 
PE=3 SV=2
Length=574

 Score = 56.6 bits (135),  Expect = 7e-07, Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 80/151 (53%), Gaps = 9/151 (6%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            K++I+ P+REL+ Q    +++   +  N K+  L +    + +   S+L N  +I++ TP
Sbjct  87   KSIILVPTRELSNQVFQFVEKLLTFSTN-KINVLNLSSSYSDQVLNSLLVNKPEIIISTP  145

Query  348  GRLDDLVSTGKLN--LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
             +L  ++   + N  LS V+ L +DE D +LS GY D + ++ + +P      K LQ  +
Sbjct  146  AKLIQILEKNEKNIDLSTVKNLTIDEVDLVLSFGYLDDLKKLESYLPV----KKNLQTFL  201

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDS  436
             SAT++  D+  L ++    P  + L  EDS
Sbjct  202  MSATVND-DLDDLKQRYCTKPAILKL-NEDS  230


 Score = 49.7 bits (117),  Expect = 9e-05, Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 0/45 (0%)

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
             +RG+D   V  V+N  LP   + Y+HRIGR  RA + G+A+S V
Sbjct  365  VSRGVDFRNVACVLNFDLPTSSKAYIHRIGRTARAGKAGMALSFV  409


 Score = 48.9 bits (115),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 1/52 (2%)

Query  11  PEIAQAVEEMDWLLPTDIQAESIPLILG-GGDVLMAAETGSGKTGAFSIPVI  61
           P + QA++++ +  PT IQ+ +IPL L    D++  A TGSGKT A+ IP++
Sbjct  23  PRLLQAIDQLGFSNPTLIQSSAIPLALEEKRDIIAKASTGSGKTAAYCIPIV  74


>sp|Q92736|RYR2_HUMAN Ryanodine receptor 2 OS=Homo sapiens OX=9606 
GN=RYR2 PE=1 SV=3
Length=4967

 Score = 57.0 bits (136),  Expect = 7e-07, Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 82/191 (43%), Gaps = 8/191 (4%)

Query  62    QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHG  121
             ++V  TL D +  K  K +++     L  +  N        A  ++ +C  + E      
Sbjct  1031  RLVPYTLLDDRTKKSNKDSLREAVRTLLGYGYNLEAPDQDHAARAE-VCSGTGERFRIFR  1089

Query  122   CRATKGLMKGKHYYEVSCHDQGLCRVGWST--MQASLDLGTDKFGFGFGGTGKKSHNKQF  179
                T  +  G+ Y+E      G  RVGWS    Q   +LG+D+  F F G   +  ++  
Sbjct  1090  AEKTYAVKAGRWYFEFETVTAGDMRVGWSRPGCQPDQELGSDERAFAFDGFKAQRWHQGN  1149

Query  180   DNYGEEFTMHDTIGCYLDIDKGHVKFSKNGK----DLGLAFEIPPHMKNQALFPACVLKN  235
             ++YG  +   D +GC +D+++  + F+ NG+    D G               P C L  
Sbjct  1150  EHYGRSWQAGDVVGCMVDMNEHTMMFTLNGEILLDDSGSELAFKDFDVGDGFIPVCSLGV  1209

Query  236   AEL-KFNFGEE  245
             A++ + NFG++
Sbjct  1210  AQVGRMNFGKD  1220


>sp|A7EWH6|MRH4_SCLS1 ATP-dependent RNA helicase mrh4, mitochondrial 
OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 
/ Ss-1) OX=665079 GN=mrh4 PE=3 SV=1
Length=615

 Score = 56.2 bits (134),  Expect = 7e-07, Method: Compositional matrix adjust.
 Identities = 76/346 (22%), Positives = 142/346 (41%), Gaps = 62/346 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLI---IGGVAARDQLSVLENGVDIV  343
            P+A+I+ P+ EL  Q    +K F   +   K +  +I     G   R++L    +G+DI+
Sbjct  260  PRAIILVPTSELVTQVGTLLKLFSHTV---KFKAAVISSNFSGKVIRNRL-FSPSGIDIL  315

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            V TP  L  +  +    LS+V  L++DEAD LL +G+S   + +   I + T   ++L  
Sbjct  316  VSTPHLLSSIADSDPNILSRVTHLIIDEADSLLDRGFSPLTSAI---IDRATPSLEKL--  370

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            ++CSAT+               P  +D       PD ++ +V P      R  + LG   
Sbjct  371  VLCSATI---------------PRSLDSFLRKRFPD-INRLVTPNLHAIPRRVQ-LGVVD  413

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
            +  D      N    A +  +WS      + +  V+ + + K  + ++F   +     + 
Sbjct  414  VERDPYRNNKNL---ACADTIWSIGKAAAEHDGPVKGLMDVK--RILVFVNEREKTQEVA  468

Query  524  QYFIQQG--------GGPDKKGHQ----FSCVCLHGDRKPHERKQNLE------------  559
             Y + +G          P+++  +    F+        KP     +L             
Sbjct  469  DYLVSKGVDAIALSRDTPEQRQSEMLASFTSPAKLSVEKPVSHPGSLSDNQPNYVPFGEV  528

Query  560  ----RFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH  601
                + +  + + L+ TD+ +RGID   V +VI   +P    +++H
Sbjct  529  APPVKRRLPNTKVLVTTDLGSRGIDTVAVRHVILYDVPHSTIDFIH  574


 Score = 38.9 bits (89),  Expect = 0.19, Method: Compositional matrix adjust.
 Identities = 22/60 (37%), Positives = 33/60 (55%), Gaps = 10/60 (17%)

Query  15   QAVEEMDWLLPTDIQAESIPLILGGGD----------VLMAAETGSGKTGAFSIPVIQIV  64
            QA+ E+   +PT +Q  ++P +LG              L+AAETGSGKT ++ IP I  +
Sbjct  156  QALPELKEHVPTPVQRIAVPALLGDQQSRRPKSEMEQYLIAAETGSGKTLSYLIPTINAI  215


>sp|Q4Z8K6|RBP9X_DROME Ran-binding proteins 9/10 homolog OS=Drosophila 
melanogaster OX=7227 GN=RanBPM PE=1 SV=1
Length=962

 Score = 56.6 bits (135),  Expect = 8e-07, Method: Compositional matrix adjust.
 Identities = 42/128 (33%), Positives = 61/128 (48%), Gaps = 13/128 (10%)

Query  131  GKHYYEV---SCHDQGLCRVGWSTMQASLDL--GTDKFGFGFGGTGKKSHNKQFD--NYG  183
            G +Y+EV   S    G   +G +  Q  ++   G DK  +G+ G    S +   +   YG
Sbjct  466  GLYYFEVRIISKGRNGYMGIGLTAQQFRMNRLPGWDKQSYGYHGDDGNSFSSSGNGQTYG  525

Query  184  EEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNA--ELKFN  241
              FT  D IGC ++       ++KNG DLG+AF   P      L+P   L+    E+  N
Sbjct  526  PTFTTGDVIGCCVNFVNNTCFYTKNGVDLGIAFRDLP----TKLYPTVGLQTPGEEVDAN  581

Query  242  FGEEEFKF  249
            FG+E FKF
Sbjct  582  FGQEPFKF  589


>sp|Q9FVV4|RH55_ARATH DEAD-box ATP-dependent RNA helicase 55 OS=Arabidopsis 
thaliana OX=3702 GN=RH55 PE=3 SV=1
Length=465

 Score = 55.8 bits (133),  Expect = 8e-07, Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 10/116 (9%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
            P+    +I+ P+REL+ Q     +  +  +D  K RE+         D  ++ E G +++
Sbjct  89   PHQVMGVIISPTRELSAQIHKVARAVR--LDFAKCREV-------EADMNTLEEEGANLL  139

Query  344  VGTPGRLDDLVSTGK-LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
            +GTPGRL D++   + L+   +  L+LDEAD LL  G+   +N + +++P+    G
Sbjct  140  IGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTG  195


 Score = 47.4 bits (111),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 25/66 (38%), Positives = 42/66 (64%), Gaps = 2/66 (3%)

Query  4   FSEMG--VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
           FSE+   +  +I +A++   + + T +QAE+IP +    DV++ A TGSGKT AF +P I
Sbjct  17  FSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFI  76

Query  62  QIVYET  67
           +I+  +
Sbjct  77  EIIRRS  82


 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 7/124 (6%)

Query  473  DNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGG  532
            D  + G  +P +  EA +  K    V  + E+K  + ++F  T   C  ++ + +     
Sbjct  207  DLAKAGLRNPYLKCEADQ--KSSQLVHLLIENKNKKLVVFFMT---CACVDYWGLVISKI  261

Query  533  PDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTL  592
            P  K   F     HG      R   L  F +     L+CTDVAARG+DI G+ Y+ ++ +
Sbjct  262  PSLKSISF--FPTHGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIVYIRSLAI  319

Query  593  PDEK  596
             D +
Sbjct  320  KDRE  323


>sp|Q4P7M1|DBP9_USTMA ATP-dependent RNA helicase DBP9 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP9 PE=3 SV=1
Length=686

 Score = 56.2 bits (134),  Expect = 9e-07, Method: Compositional matrix adjust.
 Identities = 24/56 (43%), Positives = 39/56 (70%), Gaps = 0/56 (0%)

Query  11   PEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYE  66
            P + +A+ ++ + +PT IQ ++IPL L G D+L  A TGSGKT A+ +P++Q V +
Sbjct  68   PRLLRALADLGYGIPTPIQQKAIPLALAGKDILARARTGSGKTLAYGLPLLQKVLD  123


 Score = 54.3 bits (129),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 86/185 (46%), Gaps = 20/185 (11%)

Query  254  GFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI  313
            G   L K  D     ++   N Q+T         +AL++ P+RELAEQ   ++    +Y+
Sbjct  114  GLPLLQKVLDAKSAVAKSDANHQLT---------RALVLVPTRELAEQVFRHLSVVIEYV  164

Query  314  DNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNL-SQVRFLVLDEA  372
             +  +R + +    + + Q  +L    D+V+ TP +  + +    L+L S +  L +DEA
Sbjct  165  RD-DIRLVNVAREASEKVQRLLLSEKPDVVIATPSKALNYLQNASLDLKSGMESLAIDEA  223

Query  373  DGLLSQGYSDFINRM--HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVD  430
            D +LS G+   +  +   N +P         Q  + SAT+ S DV KL   ++  P  + 
Sbjct  224  DLILSYGHDADVKSLLGANFLPS------HFQSFLMSATMTS-DVSKLKGLLLRNPVVLK  276

Query  431  LKGED  435
            L  +D
Sbjct  277  LNHDD  281


 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 33/68 (49%), Gaps = 4/68 (6%)

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE----KEKVWYHVC  631
            +RG+D   V  VIN  LP    +Y+HR+GR  R    G A+S V       + K  Y   
Sbjct  449  SRGVDFINVSCVINFDLPTSVDSYIHRVGRTARGGASGTALSFVVPSDQVGRSKYLYCAS  508

Query  632  SSRGKGCY  639
            ++R +  +
Sbjct  509  TTRDESVF  516


>sp|P0CT33|TLH1_SCHPO ATP-dependent DNA helicase tlh1 (Fragment) 
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 
GN=tlh1 PE=3 SV=1
Length=1887

 Score = 56.2 bits (134),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 56/122 (46%), Gaps = 8/122 (7%)

Query  508   QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK--GD  565
             +AIIFCRTK D + + +   Q     D   H    +   GD    ER+ N + F+   G 
Sbjct  1417  RAIIFCRTKKDVEYIHRRLHQS----DLFAHTHVTI-YTGDVSDEERQMNFDAFRNANGK  1471

Query  566   VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
              R +I T     GI+  GV  V++  LP    +YV   GR GR  +  +A +L   + + 
Sbjct  1472  TRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIA-ALFYEKYDS  1530

Query  626   VW  627
              W
Sbjct  1531  TW  1532


>sp|Q1RKN3|TLH2_SCHPO ATP-dependent DNA helicase tlh2 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=tlh2 
PE=2 SV=1
Length=1919

 Score = 56.2 bits (134),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 56/122 (46%), Gaps = 8/122 (7%)

Query  508   QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK--GD  565
             +AIIFCRTK D + + +   Q     D   H    +   GD    ER+ N + F+   G 
Sbjct  1417  RAIIFCRTKKDVEYIHRRLHQS----DLFAHTHVTI-YTGDVSDEERQMNFDAFRNANGK  1471

Query  566   VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
              R +I T     GI+  GV  V++  LP    +YV   GR GR  +  +A +L   + + 
Sbjct  1472  TRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIA-ALFYEKYDS  1530

Query  626   VW  627
              W
Sbjct  1531  TW  1532


>sp|P36120|DBP7_YEAST ATP-dependent RNA helicase DBP7 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP7 
PE=1 SV=1
Length=742

 Score = 55.8 bits (133),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 70/133 (53%), Gaps = 13/133 (10%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            AL++ P+RELA Q  +             L   L+IGG   + + + L  G + ++GTPG
Sbjct  224  ALVIAPTRELASQIYHVCSTLVSCCH--YLVPCLLIGGERKKSEKARLRKGCNFIIGTPG  281

Query  349  R-LDDLVSTG--KLNLSQ-VRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK-----  399
            R LD L +T   K  LSQ +R++VLDE D L+  G+ + I+ +   +  +  + +     
Sbjct  282  RVLDHLQNTKVIKEQLSQSLRYIVLDEGDKLMELGFDETISEIIKIVHDIPINSEKFPKL  341

Query  400  --RLQVIVCSATL  410
              +L  ++CSATL
Sbjct  342  PHKLVHMLCSATL  354


 Score = 50.1 bits (118),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 48/93 (52%), Gaps = 7/93 (8%)

Query  545  LHGDRKPHERKQNLERF------KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQN  598
            LHG      R   L+ F       KG    + CTDVA+RG+D+  V  VI +  P   ++
Sbjct  487  LHGSLSQQMRTSTLQHFARDNEATKGKHLIMFCTDVASRGLDLPHVGSVIELDPPFAVED  546

Query  599  YVHRIGRVGRAERMGLA-ISLVATEKEKVWYHV  630
            ++HR+GR  RA   G + + L+  E+EK   ++
Sbjct  547  HLHRVGRTARAGEKGESLLFLLPGEEEKYMDYI  579


 Score = 43.9 bits (102),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 4/65 (6%)

Query  4    FSEMGVMPEIAQAVEE-MDWLLPTDIQAESIPLILGGG---DVLMAAETGSGKTGAFSIP  59
            F+ +GV   +   +E+ M    PT IQ ++IP I+G     D  + A+TGSGKT ++ +P
Sbjct  145  FASLGVSSLLVSHLEQKMRIKKPTSIQKQAIPQIIGNAGKNDFFIHAQTGSGKTLSYLLP  204

Query  60   VIQIV  64
            +I  +
Sbjct  205  IISTI  209


>sp|Q54CH6|IF4AX_DICDI Putative eukaryotic initiation factor 4A-like 
protein OS=Dictyostelium discoideum OX=44689 GN=DDB_G0292914 
PE=5 SV=1
Length=248

 Score = 53.9 bits (128),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 33/104 (32%), Positives = 55/104 (53%), Gaps = 18/104 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYI---------DNPKLRELLIIGGVAARDQLSVLE  337
            P+ L++ P++EL++ T        K I         +N   + L  IGGV     + +L+
Sbjct  100  PQILMILPTKELSQTT--------KVIYSSLGGGENNNNDFKVLSCIGGVKISMDIEILK  151

Query  338  NG-VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGY  380
             G   I++GTPGR+ DL S  + +   ++ LV DE D +LS+G+
Sbjct  152  KGNTQILLGTPGRISDLFSRKRFDTDNIKILVFDELDEILSRGF  195


>sp|A6ZZY8|DBP7_YEAS7 ATP-dependent RNA helicase DBP7 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DBP7 PE=3 SV=1
Length=742

 Score = 55.8 bits (133),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 70/133 (53%), Gaps = 13/133 (10%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            AL++ P+RELA Q  +             L   L+IGG   + + + L  G + ++GTPG
Sbjct  224  ALVIAPTRELASQIYHVCSTLVSCCH--YLVPCLLIGGERKKSEKARLRKGCNFIIGTPG  281

Query  349  R-LDDLVSTG--KLNLSQ-VRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK-----  399
            R LD L +T   K  LSQ +R++VLDE D L+  G+ + I+ +   +  +  + +     
Sbjct  282  RVLDHLQNTKVIKEQLSQSLRYIVLDEGDKLMELGFDETISEIIKIVHDIPINSEKFPKL  341

Query  400  --RLQVIVCSATL  410
              +L  ++CSATL
Sbjct  342  PHKLVHMLCSATL  354


 Score = 50.1 bits (118),  Expect = 8e-05, Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 48/93 (52%), Gaps = 7/93 (8%)

Query  545  LHGDRKPHERKQNLERF------KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQN  598
            LHG      R   L+ F       KG    + CTDVA+RG+D+  V  VI +  P   ++
Sbjct  487  LHGSLSQQMRTSTLQHFARDNEATKGKHLIMFCTDVASRGLDLPHVGSVIELDPPFAVED  546

Query  599  YVHRIGRVGRAERMGLA-ISLVATEKEKVWYHV  630
            ++HR+GR  RA   G + + L+  E+EK   ++
Sbjct  547  HLHRVGRTARAGEKGESLLFLLPGEEEKYMDYI  579


 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 4/65 (6%)

Query  4    FSEMGVMPEIAQAVEE-MDWLLPTDIQAESIPLILGGG---DVLMAAETGSGKTGAFSIP  59
            F+ +GV   +   +E+ M    PT IQ ++IP I+G     D  + A+TGSGKT ++ +P
Sbjct  145  FASLGVTSLLVSHLEQKMRIKKPTSIQKQAIPQIIGNAGKNDFFIHAQTGSGKTLSYLLP  204

Query  60   VIQIV  64
            +I  +
Sbjct  205  IISTI  209


>sp|A5E572|DBP9_LODEL ATP-dependent RNA helicase DBP9 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP9 PE=3 SV=1
Length=606

 Score = 55.5 bits (132),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 44/153 (29%), Positives = 82/153 (54%), Gaps = 10/153 (7%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +++++ P+REL+ Q    ++Q  K+ +N K+  L +    + +   S+L N  +I++ TP
Sbjct  93   QSVVLVPTRELSNQVYQFMEQLIKFSNN-KIGILNLSSNYSDQVLKSLLINKPEIIISTP  151

Query  348  GRLDDLVST--GK--LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
             +L   +    GK  ++LS V+ L +DE D +LS GY D + ++ + +P      K LQ 
Sbjct  152  SKLIQTLEAHEGKDIIDLSTVKNLTIDEVDLILSFGYKDDLQKLESYLPV----KKNLQT  207

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDS  436
             + SAT++  D+ +L  K    P  + L  + S
Sbjct  208  FLMSATVND-DLNELKAKFCTKPAILKLDDDQS  239


 Score = 54.7 bits (130),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 25/61 (41%), Positives = 35/61 (57%), Gaps = 0/61 (0%)

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
             +RG+D   V  V+N  LP   ++YVHR+GR  RA + G+A+S V  EKE   +   S R
Sbjct  398  VSRGVDFRNVACVLNFDLPTTSKSYVHRVGRTARAGKSGMALSFVIPEKEVGKHKTASLR  457

Query  635  G  635
             
Sbjct  458  S  458


 Score = 52.8 bits (125),  Expect = 9e-06, Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 39/57 (68%), Gaps = 1/57 (2%)

Query  7   MGVMPEIAQAVEEMDWLLPTDIQAESIPLILG-GGDVLMAAETGSGKTGAFSIPVIQ  62
           + + P + QA++++ +  PT IQ+ +IPL L    D++  A TGSGKT A++IP+IQ
Sbjct  25  LNLDPRLLQAIDKLGFENPTLIQSSAIPLALEEKRDIIAKASTGSGKTAAYAIPIIQ  81


>sp|P34640|DDX55_CAEEL Probable ATP-dependent RNA helicase DDX55 
homolog OS=Caenorhabditis elegans OX=6239 GN=ZK512.2 PE=3 
SV=2
Length=578

 Score = 55.5 bits (132),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (55%), Gaps = 1/73 (1%)

Query  551  PHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAE  610
            PH R   ++ F       +I TDV ARGIDI  + +VI   LP     +VHR GR  R  
Sbjct  296  PH-RASQIKAFSDSTNGVMISTDVMARGIDISDIDWVIQFDLPKHSSWFVHRAGRTARCG  354

Query  611  RMGLAISLVATEK  623
            R G A+ L+A+E+
Sbjct  355  REGNALILIASEQ  367


 Score = 49.7 bits (117),  Expect = 9e-05, Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 63/127 (50%), Gaps = 8/127 (6%)

Query  277  VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL  336
            +   K  P    ALI+ PSREL  Q ++ I+ F + ++   L    + GG      + + 
Sbjct  71   IQNAKLQPADIGALILSPSRELCSQIVSVIQPFAEKLN---LTVETVTGGQKVDKNIKMF  127

Query  337  EN-GVDIVVGTPGRLDDLVSTGKLNLSQ----VRFLVLDEADGLLSQGYSDFINRMHNQI  391
            +N  V+I+V TPGRL  ++   K  +++    ++ LV+DEAD      + D +  + + I
Sbjct  128  KNKNVNILVATPGRLFQIIQHEKTLIARKMRTLQLLVIDEADRFNEIQFEDHMREILSCI  187

Query  392  PQVTSDG  398
            P+    G
Sbjct  188  PKQRRTG  194


 Score = 35.8 bits (81),  Expect = 1.7, Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 0/39 (0%)

Query  26  TDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIV  64
           TD+Q  S   +L   DV++ + TGSGKT AF +P+++++
Sbjct  33  TDVQVLSGTHLLNLSDVVVESPTGSGKTLAFVLPMMRMI  71


>sp|A4QTC6|MRH4_PYRO7 ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / 
FGSC 8958) OX=242507 GN=MRH4 PE=3 SV=1
Length=651

 Score = 55.5 bits (132),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 87/377 (23%), Positives = 151/377 (40%), Gaps = 90/377 (24%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN------GV  340
            P+ +I+ P+ EL +Q     K         K R  +I   ++A    +++EN      G+
Sbjct  310  PRVVILVPTAELVDQVGRVAKSLSHVA---KARTRMISANMSA----TMIENDVFSPAGI  362

Query  341  DIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ-IPQVTSDGK  399
            DI++ TP  L  +  +    LS+V  LV+DEAD LL + +S+    + ++ +P +     
Sbjct  363  DILISTPHLLASIAESHPNILSRVSHLVVDEADSLLDRSFSEVTTPIIDRALPSIR----  418

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED--SVPDTVHHVVVPVNPKTDRLWE  457
              Q+++CSAT+       L+ +   FP    +   +  ++P  V                
Sbjct  419  --QLVLCSATIPRRLDNYLASR---FPNMRRITTPNLHAIPRRVQ---------------  458

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWS---EAIK---ILKGEYAVRAIKEHKMDQAII  511
             LG   +  D      N    A +  +WS   EA +    +KG+  VR I        ++
Sbjct  459  -LGVIDVARDPYRGNKNI---ACADAIWSIGKEAGRHEGPVKGQVDVRRI--------MV  506

Query  512  FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV-----  566
            F   +     + +Y   +G            V LH D     + + L  F   +      
Sbjct  507  FVNEREKTQEVAEYLKSKG---------IDAVALHRDTSEERQSEMLASFTSNETMSIPT  557

Query  567  ------------------RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
                              + ++ TD+A+RGID   V +V+   +P    +++HR+GR GR
Sbjct  558  PEGGVAGSPRSSRTLPNTKVIVATDLASRGIDTLAVRHVVLYDVPHTTIDFIHRLGRAGR  617

Query  609  AERMGLAISLVATEKEK  625
              R G  I LV  +  K
Sbjct  618  MGRRGRGIVLVGNDDRK  634


>sp|Q869P0|DDX31_DICDI Probable ATP-dependent RNA helicase ddx31 
OS=Dictyostelium discoideum OX=44689 GN=ddx31 PE=3 SV=2
Length=908

 Score = 55.1 bits (131),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 75/146 (51%), Gaps = 9/146 (6%)

Query  290  LIVEPSRELAEQTLNNIKQFKK--YIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +I+ P+REL+ Q    +++  K  Y   P +    I+GG     + + +  G++I+V TP
Sbjct  284  VIITPTRELSSQIYEELQKLLKPFYWIVPGI----IMGGENRSAEKARIRKGINILVATP  339

Query  348  GRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK-RLQVIV  405
            GRL D L +T       +++ +LDEAD LL  G+   +  + N +       K + Q I+
Sbjct  340  GRLLDHLQNTQSFPTDNIKWCILDEADKLLDLGFEKDVTTIINLLDSKKRTMKFKRQNIL  399

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDL  431
             SATL S  + +L+   +  P ++ L
Sbjct  400  VSATL-SEGISRLASLSLTSPVYIGL  424


 Score = 52.4 bits (124),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 51/107 (48%), Gaps = 6/107 (6%)

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            LHG+     R +    FK      L+ TDV+ARG+D+  V +++      + ++Y+HRIG
Sbjct  609  LHGELDQQTRTKTFFDFKNSPNGILLTTDVSARGLDLPSVNWIVQYDPCSDTKDYIHRIG  668

Query  605  RVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTI  651
            R  R    G ++  +   ++K   H+        +N  +KE    TI
Sbjct  669  RTARLGNQGCSLLFLLPSEKKYIDHLAK------FNVSVKEMKVTTI  709


 Score = 47.8 bits (112),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 23/42 (55%), Positives = 29/42 (69%), Gaps = 0/42 (0%)

Query  25   PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYE  66
            PT IQ  SI  IL G D L+ A+TGSGKT ++ IPV+Q + E
Sbjct  231  PTHIQEASITPILKGNDALVKAQTGSGKTLSYLIPVVQKLTE  272


>sp|Q4WYJ7|SPB4_ASPFU ATP-dependent rRNA helicase spb4 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC 
A1100 / Af293) OX=330879 GN=spb4 PE=3 SV=2
Length=640

 Score = 54.7 bits (130),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 56/99 (57%), Gaps = 1/99 (1%)

Query  537  GHQFSCVCLHGDRKPHERKQNLERF-KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDE  595
            G  F  + LHG  + + R++N  RF    D   L+ TDVAARG+DI  V  V+ +  P +
Sbjct  320  GDDFLLIPLHGKHQANVRQKNFNRFINSHDPAILLTTDVAARGLDIPSVDLVVQIDPPSD  379

Query  596  KQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
             ++++HR GR GRA R GL++ L+   +E+ +      R
Sbjct  380  PKSFIHRCGRAGRAGRRGLSVVLLHPGREEDYVSFLEVR  418


 Score = 53.9 bits (128),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 65/136 (48%), Gaps = 26/136 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKY------IDNP----------------KLRELLIIGG  326
            A+I+ P+RELA Q  N +     +        NP                K+   L++GG
Sbjct  90   AIIISPTRELASQIYNVLSSLLAFHPPSAAAINPSEDDDAPRPKFPSSTLKVVPQLLLGG  149

Query  327  --VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRF--LVLDEADGLLSQGYSD  382
                A D  + L+   +++V TPGRL +L+S+  ++  Q  F  LVLDEAD LL  G+ +
Sbjct  150  STTPAEDLSTFLKRSPNVLVSTPGRLLELLSSPHVHCPQSSFEMLVLDEADRLLDLGFKE  209

Query  383  FINRMHNQIPQVTSDG  398
             +  +  ++P+    G
Sbjct  210  TLQNILRRLPKQRRTG  225


 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 0/50 (0%)

Query  13  IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           + +A+  M +   T +QA +IPL +   DV++ A TGSGKT +F IPV++
Sbjct  25  VLEAMSSMGFTRMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLIPVVE  74


>sp|A1D699|SPB4_NEOFI ATP-dependent rRNA helicase spb4 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=spb4 
PE=3 SV=1
Length=640

 Score = 54.7 bits (130),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 56/99 (57%), Gaps = 1/99 (1%)

Query  537  GHQFSCVCLHGDRKPHERKQNLERF-KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDE  595
            G  F  + LHG  + + R++N  RF    D   L+ TDVAARG+DI  V  V+ +  P +
Sbjct  320  GDDFLLIPLHGKHQANVRQKNFNRFINSHDPAILLTTDVAARGLDIPSVDLVVQIDPPSD  379

Query  596  KQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
             ++++HR GR GRA R GL++ L+   +E+ +      R
Sbjct  380  PKSFIHRCGRAGRAGRRGLSVVLLHPGREEDYVSFLEVR  418


 Score = 53.9 bits (128),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 65/136 (48%), Gaps = 26/136 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKY------IDNP----------------KLRELLIIGG  326
            A+I+ P+RELA Q  N +     +        NP                K+   L++GG
Sbjct  90   AIIISPTRELASQIYNVLSSLLAFHPPSAAAINPSEDDDAPRPKFPSSTLKVVPQLLLGG  149

Query  327  --VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRF--LVLDEADGLLSQGYSD  382
                A D  + L+   +++V TPGRL +L+S+  ++  Q  F  LVLDEAD LL  G+ +
Sbjct  150  STTPAEDLSTFLKRSPNVLVSTPGRLLELLSSPHVHCPQSSFEMLVLDEADRLLDLGFKE  209

Query  383  FINRMHNQIPQVTSDG  398
             +  +  ++P+    G
Sbjct  210  TLQNILRRLPKQRRTG  225


 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 0/50 (0%)

Query  13  IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           + +A+  M +   T +QA +IPL +   DV++ A TGSGKT +F IPV++
Sbjct  25  VLEAMSSMGFTRMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLIPVVE  74


>sp|A2QZ71|MRH4_ASPNC ATP-dependent RNA helicase mrh4, mitochondrial 
OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 
/ FGSC A1513) OX=425011 GN=mrh4 PE=3 SV=2
Length=633

 Score = 53.9 bits (128),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 21/158 (13%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN--GVDIVV  344
            P+ +I+ P+ EL  Q    +K     +   K R  +I   +  R   S+L N  G+DI+V
Sbjct  272  PRVIILVPTSELVAQVGAKVKALSHTV---KYRSGMISSNLTPRRIKSILFNPSGIDILV  328

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TP  L  +  T    LS+V  LVLDEAD L+ +    F+      I +  S   +L  I
Sbjct  329  ATPHLLASIAKTDPYVLSRVSHLVLDEADSLMDRS---FLPTTTEIIEKSASSLHKL--I  383

Query  405  VCSATLHSF----------DVKKLSEKIMH-FPTWVDL  431
            +CSAT+             D+++L+   +H  P  V L
Sbjct  384  LCSATIPRSLDNLLRKRYPDIRRLTTPNLHAIPRRVQL  421


 Score = 49.7 bits (117),  Expect = 9e-05, Method: Compositional matrix adjust.
 Identities = 23/61 (38%), Positives = 37/61 (61%), Gaps = 0/61 (0%)

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            + + L+ TD+A+RGID   V  VI   +P    +++HR+GR+GR  + G A+ LV  +  
Sbjct  556  NTKVLVTTDIASRGIDTIAVKTVILYHVPHNTIDFIHRLGRLGRMGKRGRAVVLVGKKDR  615

Query  625  K  625
            K
Sbjct  616  K  616


 Score = 37.7 bits (86),  Expect = 0.38, Method: Compositional matrix adjust.
 Identities = 27/83 (33%), Positives = 43/83 (52%), Gaps = 22/83 (27%)

Query  1    MAAFSEMGVMPEI-----AQAVEEMDWLLPTDIQAESIPLIL-------GGGDV------  42
            +++F +  ++P +     +QA+     ++PT IQ  +IP +L          DV      
Sbjct  141  VSSFDQFPLLPVVRHSISSQALSRTGDIVPTPIQRLAIPQLLKDPIPKRTSKDVSDHEPN  200

Query  43   ----LMAAETGSGKTGAFSIPVI  61
                L+AAETGSGKT A+ IP+I
Sbjct  201  FEQYLLAAETGSGKTLAYLIPLI  223


>sp|A7TE77|MRH4_VANPO ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 
70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / 
UCD 57-17) OX=436907 GN=MRH4 PE=3 SV=1
Length=539

 Score = 53.5 bits (127),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 66/128 (52%), Gaps = 14/128 (11%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +++I  P+ EL +Q  N +K+ +   ++ K        G    + +  L+N +DI++ TP
Sbjct  183  RSVIFLPTHELVDQVYNTVKKTE---NDLKFHVYKWDSGTKYPEIVEKLKNRIDILITTP  239

Query  348  GRLDDL-----VSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
             +L +L     +S     LS+V+F+VLDEAD LL + + +  +R    +P          
Sbjct  240  AKLLNLFNIRMISRADRLLSEVKFVVLDEADTLLDKSWVEDTHRAIRSLPNTN------H  293

Query  403  VIVCSATL  410
            ++ CSAT+
Sbjct  294  LLFCSATI  301


 Score = 44.3 bits (103),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 18/65 (28%), Positives = 37/65 (57%), Gaps = 1/65 (2%)

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            +  ++ L+ TD+ ARG++  GV  ++   +P    + +HR+GR  R ++ G  + ++  +
Sbjct  461  ESSLKVLVSTDLMARGLNFQGVRNLVLYDVPQTSIDLIHRVGRTARMQQRG-RVFMITDK  519

Query  623  KEKVW  627
            K K W
Sbjct  520  KTKSW  524


>sp|P0CQ94|DBP7_CRYNJ ATP-dependent RNA helicase DBP7 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=DBP7 PE=3 SV=1
Length=948

 Score = 53.5 bits (127),  Expect = 6e-06, Method: Compositional matrix adjust.
 Identities = 40/115 (35%), Positives = 57/115 (50%), Gaps = 18/115 (16%)

Query  289  ALIVEPSRELAEQTLNNIKQF--------------KKYIDNPKLREL---LIIGGVAARD  331
            A+I+ P+RELA+Q    ++Q               +   D P  R L   L+ GG     
Sbjct  298  AIILAPTRELAQQISKVLEQLLHMSFAASKEGSDDEDEDDRPFTRWLVSGLLTGGSTRTH  357

Query  332  QLSVLENGVDIVVGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            + + L  GV I+V TPGRL D L +T     ++  FLVLDEAD L+  G+ + I 
Sbjct  358  EKAKLRKGVPILVSTPGRLLDHLQNTMSFQCAKTMFLVLDEADRLMDLGFEETIQ  412


 Score = 47.8 bits (112),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 30/84 (36%), Positives = 42/84 (50%), Gaps = 4/84 (5%)

Query  545  LHGDRKPHERKQNLERFKKGDVR--FLICTDVAARGIDIHGVPYVINVTLPDE--KQNYV  600
            LHG      R  +L+ F     +   L  T VA+RG+D+  V  V+   LP E     YV
Sbjct  647  LHGSLPLRTRLASLKAFATSSSQPSVLFATSVASRGLDLPLVRAVVQYDLPTEGGANEYV  706

Query  601  HRIGRVGRAERMGLAISLVATEKE  624
            HR+GR  RA + G A + V+  +E
Sbjct  707  HRVGRTARAGKGGEAWAFVSPSEE  730


>sp|P0CQ95|DBP7_CRYNB ATP-dependent RNA helicase DBP7 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=DBP7 PE=3 SV=1
Length=948

 Score = 53.5 bits (127),  Expect = 6e-06, Method: Compositional matrix adjust.
 Identities = 40/115 (35%), Positives = 57/115 (50%), Gaps = 18/115 (16%)

Query  289  ALIVEPSRELAEQTLNNIKQF--------------KKYIDNPKLREL---LIIGGVAARD  331
            A+I+ P+RELA+Q    ++Q               +   D P  R L   L+ GG     
Sbjct  298  AIILAPTRELAQQISKVLEQLLHMSFAASKEGSDDEDEDDRPFTRWLVSGLLTGGSTRTH  357

Query  332  QLSVLENGVDIVVGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            + + L  GV I+V TPGRL D L +T     ++  FLVLDEAD L+  G+ + I 
Sbjct  358  EKAKLRKGVPILVSTPGRLLDHLQNTMSFQCAKTMFLVLDEADRLMDLGFEETIQ  412


 Score = 47.8 bits (112),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 30/84 (36%), Positives = 42/84 (50%), Gaps = 4/84 (5%)

Query  545  LHGDRKPHERKQNLERFKKGDVR--FLICTDVAARGIDIHGVPYVINVTLPDE--KQNYV  600
            LHG      R  +L+ F     +   L  T VA+RG+D+  V  V+   LP E     YV
Sbjct  647  LHGSLPLRTRLASLKAFATSSSQPSVLFATSVASRGLDLPLVRAVVQYDLPTEGGANEYV  706

Query  601  HRIGRVGRAERMGLAISLVATEKE  624
            HR+GR  RA + G A + V+  +E
Sbjct  707  HRVGRTARAGKGGEAWAFVSPSEE  730


>sp|Q5B8F4|SPB4_EMENI ATP-dependent rRNA helicase spb4 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / 
NRRL 194 / M139) OX=227321 GN=spb4 PE=3 SV=1
Length=638

 Score = 53.5 bits (127),  Expect = 6e-06, Method: Compositional matrix adjust.
 Identities = 42/136 (31%), Positives = 66/136 (49%), Gaps = 26/136 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKY---------------IDNPK-----LREL--LIIGG  326
            A+IV P+RELA Q  N +     +               +  PK     LR +  L++GG
Sbjct  90   AIIVSPTRELASQIYNVLTSLLAFHPASAAVINTSETEDVPRPKHSSSVLRVVPQLLLGG  149

Query  327  VA--ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRF--LVLDEADGLLSQGYSD  382
                A D  + L+   +++V TPGRL +L+S+  +   Q  F  LVLDEAD LL  G+ +
Sbjct  150  STSPAEDLSTFLKRSPNLLVATPGRLLELLSSPHVYCPQSSFEMLVLDEADRLLDLGFKE  209

Query  383  FINRMHNQIPQVTSDG  398
             +  +  ++P+    G
Sbjct  210  TLQNILRRLPKQRRTG  225


 Score = 52.8 bits (125),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 55/99 (56%), Gaps = 1/99 (1%)

Query  537  GHQFSCVCLHGDRKPHERKQNLERFKKG-DVRFLICTDVAARGIDIHGVPYVINVTLPDE  595
            G+ F  + LHG    + R++N  RF    +   L+ TDVA+RG+DI  V  V+ +  P +
Sbjct  320  GNDFQLIPLHGKHPANVRQKNFNRFVNAHNPAILLTTDVASRGLDIPSVDLVVQIDPPSD  379

Query  596  KQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
             + ++HR GR GRA R GL++ L+   +E+ +      R
Sbjct  380  PKTFIHRCGRAGRAGRRGLSVVLLHPGREEDYVSFLEVR  418


 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 0/50 (0%)

Query  13  IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +  AV  M +   T +QA +IPL +   DV++ A TGSGKT +F IPV++
Sbjct  25  VLDAVSSMGFTRMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLIPVVE  74


>sp|Q8IBN8|DDX31_PLAF7 ATP-dependent DNA helicase DDX31 OS=Plasmodium 
falciparum (isolate 3D7) OX=36329 GN=DDX31 PE=1 SV=1
Length=899

 Score = 53.5 bits (127),  Expect = 7e-06, Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 63/112 (56%), Gaps = 7/112 (6%)

Query  289  ALIVEPSRELAEQTLNNIKQF--KKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
             L++ P+RELA Q +NN+     K Y   P +    I GG   + + + L+ G+ I+  T
Sbjct  252  VLVLSPTRELAIQ-INNLFCILTKPY---PYIVASCITGGEKKKSEKNRLKKGISILTCT  307

Query  347  PGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD  397
            PGRL D L +T  L L+ ++ ++LDEAD ++  G  D I  +++ I ++  +
Sbjct  308  PGRLLDHLENTKSLKLTFLKMVILDEADKIIYLGTQDKIKLIYDMIRKIKQE  359


 Score = 53.1 bits (126),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            LHG+    +R  N   F K +   L+CTD+ +RGI    +  VI    P   + Y+H++G
Sbjct  674  LHGNLSKEDRLGNFMDFSKTNNSILLCTDIISRGIHFDSLSVVIQYDPPQILEEYIHKVG  733

Query  605  RVGRAERMGLA-ISLVATEKE  624
            R  R  + G A + L+ ++K+
Sbjct  734  RTARLNKQGSAYLFLLKSQKQ  754


 Score = 43.1 bits (100),  Expect = 0.010, Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 0/50 (0%)

Query  13   IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +   +E+ +++  T IQ  SIPL     D+ + + TGSGKT  ++IP I+
Sbjct  184  LINTLEKNEFIKMTSIQKMSIPLFFKPNDIFLKSMTGSGKTLCYAIPSIE  233


>sp|P0CR10|DBP9_CRYNJ ATP-dependent RNA helicase DBP9 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=DBP9 PE=3 SV=1
Length=627

 Score = 53.1 bits (126),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 0/55 (0%)

Query  16  AVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKD  70
           A+ +  +  PT +QA++IPL+L G DVL  A TGSGKT A+ +P +Q + E   D
Sbjct  35  ALADQKFAHPTLVQAKAIPLLLEGKDVLARARTGSGKTAAYIVPAVQKILEAKAD  89


 Score = 52.0 bits (123),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 51/151 (34%), Positives = 81/151 (54%), Gaps = 12/151 (8%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
             A +A+I+ P++ELA Q  +  K   KY D   L + + +    A  Q  +L +  DIV+
Sbjct  98   QATRAIILVPTKELALQVSSFTKNVTKYCDG--LVQCVDVAAGGASIQRVLLNDKPDIVI  155

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ----IPQVTSDGKR  400
             TP +L  L+ +  L+LSQ+ FL +DEAD LLS G+ D + R+ +     IP++   G  
Sbjct  156  STPTKLLSLLQSKSLSLSQLSFLAIDEADLLLSYGFKDDLTRIMDPTSGWIPKLGVQG--  213

Query  401  LQVIVCSATLHSFDVKKLSEKIMHFPTWVDL  431
                + SATL S DV+ +   ++  P  + L
Sbjct  214  ---CLMSATL-SDDVEGIKGLVLRNPAILTL  240


 Score = 48.1 bits (113),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 23/48 (48%), Positives = 28/48 (58%), Gaps = 0/48 (0%)

Query  572  TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            T   ARGID      VIN  LP    +Y+HR+GR  RA + GLA+S V
Sbjct  405  TSSLARGIDFTSASSVINFDLPLTSTSYMHRVGRTARAGQSGLALSFV  452


>sp|P0CR11|DBP9_CRYNB ATP-dependent RNA helicase DBP9 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=DBP9 PE=3 SV=1
Length=627

 Score = 53.1 bits (126),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 0/55 (0%)

Query  16  AVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKD  70
           A+ +  +  PT +QA++IPL+L G DVL  A TGSGKT A+ +P +Q + E   D
Sbjct  35  ALADQKFAHPTLVQAKAIPLLLEGKDVLARARTGSGKTAAYIVPAVQKILEAKAD  89


 Score = 52.0 bits (123),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 51/151 (34%), Positives = 81/151 (54%), Gaps = 12/151 (8%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
             A +A+I+ P++ELA Q  +  K   KY D   L + + +    A  Q  +L +  DIV+
Sbjct  98   QATRAIILVPTKELALQVSSFTKNVTKYCDG--LVQCVDVAAGGASIQRVLLNDKPDIVI  155

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ----IPQVTSDGKR  400
             TP +L  L+ +  L+LSQ+ FL +DEAD LLS G+ D + R+ +     IP++   G  
Sbjct  156  STPTKLLSLLQSKSLSLSQLSFLAIDEADLLLSYGFKDDLTRIMDPTSGWIPKLGVQG--  213

Query  401  LQVIVCSATLHSFDVKKLSEKIMHFPTWVDL  431
                + SATL S DV+ +   ++  P  + L
Sbjct  214  ---CLMSATL-SDDVEGIKGLVLRNPAILTL  240


 Score = 48.1 bits (113),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 23/48 (48%), Positives = 28/48 (58%), Gaps = 0/48 (0%)

Query  572  TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            T   ARGID      VIN  LP    +Y+HR+GR  RA + GLA+S V
Sbjct  405  TSSLARGIDFTSASSVINFDLPLTSTSYMHRVGRTARAGQSGLALSFV  452


>sp|Q74ZC1|DBP9_EREGS ATP-dependent RNA helicase DBP9 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DBP9 PE=3 SV=1
Length=595

 Score = 53.1 bits (126),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 31/50 (62%), Gaps = 0/50 (0%)

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            A+RG+D   V  V+N  LP   ++YVHRIGR  RA + G AIS V   KE
Sbjct  386  ASRGVDFQNVSCVLNFDLPTTAKSYVHRIGRTARAGKSGTAISFVVPLKE  435


 Score = 49.7 bits (117),  Expect = 9e-05, Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 77/150 (51%), Gaps = 11/150 (7%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR  349
            +++ P+RELA+Q    +++   Y     +R L I   V       +L    +I++ TP +
Sbjct  97   VVLVPTRELAQQVRVVLEKLVLYCSK-DIRLLNISANVDDSVLGPLLAENPEIIISTPSQ  155

Query  350  LDDLVSTGK----LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            L  ++  GK    ++L  +RFLV+DE D +L+ GY + + ++   +P      K LQ  +
Sbjct  156  LVKILE-GKHLQTISLRDLRFLVIDEVDLILTFGYQEDLLKISQYLPL----KKNLQAFL  210

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGED  435
             SATL+  ++++L  K    P  + L  ++
Sbjct  211  MSATLNE-EIQELKTKFCRSPAILKLNDDE  239


 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 1/65 (2%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLIL-GGGDVLMAAETGSGKTGAFSIPVI  61
            FS   +   + Q+++   +  PT IQ+ +IPL L    D++  A TGSGKT A+ IPV+
Sbjct  17  TFSSFQLDLRLQQSLKSSGFHHPTLIQSSAIPLALEQKRDIIAKASTGSGKTLAYLIPVV  76

Query  62  QIVYE  66
           Q + E
Sbjct  77  QTILE  81


>sp|A1CTL8|MAK5_ASPCL ATP-dependent RNA helicase mak5 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=mak5 PE=3 SV=1
Length=774

 Score = 53.1 bits (126),  Expect = 9e-06, Method: Compositional matrix adjust.
 Identities = 27/70 (39%), Positives = 42/70 (60%), Gaps = 0/70 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++A+  + +  E+   + +M +  PT +QA  IP IL G DV+  A TGSGKT AF IP+
Sbjct  197  VSAWDALNLSTELLTGISKMKFTSPTAVQAACIPHILDGHDVVGKASTGSGKTLAFGIPI  256

Query  61   IQIVYETLKD  70
            ++   E  +D
Sbjct  257  LEHYLEKNRD  266


 Score = 52.4 bits (124),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 3/74 (4%)

Query  546  HGDRKPHERKQNLERFKKGDVR---FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHR  602
            H       R +++ERF          LI TDVAARG+DI G+  VI+   P     YVHR
Sbjct  534  HSSMAQKARLRSVERFSSPTANPGTILIATDVAARGLDIKGIDLVIHYHAPRTADTYVHR  593

Query  603  IGRVGRAERMGLAI  616
             GR  RA   G ++
Sbjct  594  SGRTARAGASGKSV  607


>sp|Q6CWQ5|MRH4_KLULA ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 
/ DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=MRH4 
PE=3 SV=1
Length=584

 Score = 52.8 bits (125),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query  559  ERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            E F +  ++ L+ TDV ARGI+  G  YV+   +P+   + VHR+GR GR  + G ++ +
Sbjct  502  EAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG-SVFI  560

Query  619  VATEKEKVWYHVCSS  633
            +  ++ K W     S
Sbjct  561  ITGKRVKNWVKAIPS  575


 Score = 49.3 bits (116),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 22/132 (17%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +++I+ P+ EL EQ    + + +  +    +       G + +  +  L+  +DI+V TP
Sbjct  230  RSIILLPTHELVEQVYQTVSKLEPALG---MHTYKWDAGSSYKGFVEALKGRIDIMVTTP  286

Query  348  GRLDDLVSTGKLN-----LSQVRFLVLDEADGLLSQGYSD----FINRMHNQIPQVTSDG  398
            G++  L +   +N     LSQV+FLV+DEAD LL + + +     I  M N         
Sbjct  287  GKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNL--------  338

Query  399  KRLQVIVCSATL  410
                V+ CSAT+
Sbjct  339  --NHVLFCSATI  348


 Score = 33.9 bits (76),  Expect = 5.8, Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 25/38 (66%), Gaps = 9/38 (24%)

Query  43   LMAAETGSGKTGAFSIPVIQIV---------YETLKDQ  71
            L+AAETGSGKT A+ IP++  +         +ETLKD+
Sbjct  189  LIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDK  226


>sp|Q1E1R7|SPB4_COCIM ATP-dependent rRNA helicase SPB4 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=SPB4 PE=3 SV=2
Length=653

 Score = 52.8 bits (125),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 36/114 (32%), Positives = 63/114 (55%), Gaps = 7/114 (6%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNP-KLRELLIIGGVA--ARDQLSVLENGVD  341
            +AP A  ++PS   +++T +       Y  +  K+   L++GG    A+D  + L+   +
Sbjct  117  HAPSAAAIQPST--SDETADGETTLPSYPSSTLKVVPQLLLGGATTPAQDLSTFLKRSPN  174

Query  342  IVVGTPGRLDDLVSTGKLNLSQVRF--LVLDEADGLLSQGYSDFINRMHNQIPQ  393
            + V TPGRL +L+S+  ++  Q  F  LVLDEAD LL  G+ D + +   ++P+
Sbjct  175  LFVSTPGRLLELLSSPHVHCPQTSFEVLVLDEADRLLDLGFKDDLQKTLARLPK  228


 Score = 52.4 bits (124),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 1/87 (1%)

Query  540  FSCVCLHGDRKPHERKQNLERFKKG-DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQN  598
            F  + LHG   P+ R++N  RF        L+ TDVAARG+DI  V  VI    P + + 
Sbjct  331  FVTLPLHGKHPPNVRQKNFSRFTNSVSPSVLLTTDVAARGLDIPLVDLVIQFDPPTDPKA  390

Query  599  YVHRIGRVGRAERMGLAISLVATEKEK  625
            Y+HR GR GRA R GL++ L+   +E+
Sbjct  391  YLHRCGRAGRAGRRGLSVILLCPGREE  417


 Score = 48.9 bits (115),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 0/50 (0%)

Query  13  IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           I  AV  M +   T +QA +IPL +G  DV++ A TGSGKT AF IPV++
Sbjct  28  ILDAVAAMGFTRMTPVQASTIPLFMGHKDVVVEAVTGSGKTMAFLIPVVE  77


>sp|Q755C5|MRH4_EREGS ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 
/ FGSC 9923 / NRRL Y-1056) OX=284811 GN=MRH4 PE=3 SV=1
Length=554

 Score = 51.6 bits (122),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 8/100 (8%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            A ++LI+ P+ EL EQ    +++ ++ +   +L+   +      +D +   +  VDI+V 
Sbjct  199  ALRSLILVPTHELVEQVYMTLEKLQEPL---QLKTFKLDRDTPYKDIVEAFKGRVDIMVT  255

Query  346  TPGRLDDLVSTGKLN-----LSQVRFLVLDEADGLLSQGY  380
            TPG+L  L     L+     LSQVRF V+DEAD L+ Q +
Sbjct  256  TPGKLRGLFKIRMLHRPDRILSQVRFAVVDEADTLMDQSW  295


 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 26/77 (34%), Positives = 38/77 (49%), Gaps = 12/77 (16%)

Query  549  RKPHER------------KQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEK  596
            +KP ER            K N +R     ++ L+ TDV +RGI+  GV +VI   +P + 
Sbjct  450  KKPQERRLPNSNIKVADSKDNGQRSVSSPLKVLVTTDVLSRGINFKGVKHVILYDVPAKS  509

Query  597  QNYVHRIGRVGRAERMG  613
             + VHR+GR  R    G
Sbjct  510  IDLVHRVGRTSRMNERG  526


>sp|Q5R881|RSPRY_PONAB RING finger and SPRY domain-containing 
protein 1 OS=Pongo abelii OX=9601 GN=RSPRY1 PE=2 SV=1
Length=576

 Score = 51.6 bits (122),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 42/178 (24%), Positives = 72/178 (40%), Gaps = 23/178 (13%)

Query  93   MNPYDRGSAFAIGSDGLCCQSR-EVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWST  151
            +N  D      I   GL  ++R +   +   R T  +  G  YYEV+    G+ ++GW+T
Sbjct  322  LNSNDVSEYLKISPHGL--EARCDASSFESVRCTFCVDAGVWYYEVTVVTSGVMQIGWAT  379

Query  152  MQASL------DLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMH--------DTIGCYLD  197
              +         +G D++   + G       +Q   Y      H        DT+G  LD
Sbjct  380  RDSKFLNHEGYGIGDDEYSCAYDGC------RQLIWYNARSKPHIHPCWKEGDTVGFLLD  433

Query  198  IDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGF  255
            +++  + F  NG  L    ++     +     A  +   + +FNFG + FK+PP   F
Sbjct  434  LNEKQMIFFLNGNQLPPEKQVFSSTVSGFFAAASFMSYQQCEFNFGAKPFKYPPSMKF  491


>sp|Q95LP3|RSPRY_MACFA RING finger and SPRY domain-containing 
protein 1 OS=Macaca fascicularis OX=9541 GN=RSPRY1 PE=2 SV=1
Length=576

 Score = 51.2 bits (121),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 42/178 (24%), Positives = 72/178 (40%), Gaps = 23/178 (13%)

Query  93   MNPYDRGSAFAIGSDGLCCQSR-EVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWST  151
            +N  D      I   GL  ++R +   +   R T  +  G  YYEV+    G+ ++GW+T
Sbjct  322  LNSNDVSEYLKISPHGL--EARCDASSFESVRCTFCVDAGVWYYEVTVVTSGVMQIGWAT  379

Query  152  MQASL------DLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMH--------DTIGCYLD  197
              +         +G D++   + G       +Q   Y      H        DT+G  LD
Sbjct  380  RDSKFLNHEGYGIGDDEYSCAYDGC------RQLIWYNARSKPHIHPCWKEGDTVGFLLD  433

Query  198  IDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGF  255
            +++  + F  NG  L    ++     +     A  +   + +FNFG + FK+PP   F
Sbjct  434  LNEKQMIFFLNGNQLPPEKQVFSSTISGFFAAASFMSYQQCEFNFGAKPFKYPPSMKF  491


>sp|Q96DX4|RSPRY_HUMAN RING finger and SPRY domain-containing 
protein 1 OS=Homo sapiens OX=9606 GN=RSPRY1 PE=1 SV=1
Length=576

 Score = 51.2 bits (121),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 42/178 (24%), Positives = 72/178 (40%), Gaps = 23/178 (13%)

Query  93   MNPYDRGSAFAIGSDGLCCQSR-EVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWST  151
            +N  D      I   GL  ++R +   +   R T  +  G  YYEV+    G+ ++GW+T
Sbjct  322  LNSNDVSEYLKISPHGL--EARCDASSFESVRCTFCVDAGVWYYEVTVVTSGVMQIGWAT  379

Query  152  MQASL------DLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMH--------DTIGCYLD  197
              +         +G D++   + G       +Q   Y      H        DT+G  LD
Sbjct  380  RDSKFLNHEGYGIGDDEYSCAYDGC------RQLIWYNARSKPHIHPCWKEGDTVGFLLD  433

Query  198  IDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGF  255
            +++  + F  NG  L    ++     +     A  +   + +FNFG + FK+PP   F
Sbjct  434  LNEKQMIFFLNGNQLPPEKQVFSSTVSGFFAAASFMSYQQCEFNFGAKPFKYPPSMKF  491


>sp|Q8BVR6|RSPRY_MOUSE RING finger and SPRY domain-containing 
protein 1 OS=Mus musculus OX=10090 GN=Rspry1 PE=1 SV=1
Length=576

 Score = 51.2 bits (121),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 42/178 (24%), Positives = 71/178 (40%), Gaps = 23/178 (13%)

Query  93   MNPYDRGSAFAIGSDGLCCQSR-EVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWST  151
            +N  D      I   GL  ++R +   +   R T  +  G  YYEV+    G+ ++GW+T
Sbjct  322  LNSNDVSEYLKISPHGL--EARCDASSFESVRCTFCVDTGVWYYEVTVVTSGVMQIGWAT  379

Query  152  MQASL------DLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMH--------DTIGCYLD  197
              +         +G D++   + G       +Q   Y      H        DT+G  LD
Sbjct  380  RDSKFLNHEGYGIGDDEYSCAYDGC------RQLIWYNARSKPHVHPCWKEGDTVGFLLD  433

Query  198  IDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGF  255
            +++  + F  NG  L    ++     +     A  +   + +FNFG   FK+PP   F
Sbjct  434  LNEKQMIFFLNGNQLPPEKQVFSSTVSGFFAAASFMSYQQCEFNFGARPFKYPPSMKF  491


>sp|Q4P0Y5|DBP7_USTMA ATP-dependent RNA helicase DBP7 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP7 PE=3 SV=1
Length=974

 Score = 51.6 bits (122),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 66/136 (49%), Gaps = 23/136 (17%)

Query  289  ALIVEPSRELAEQTLN----------NIKQFKKYIDNPKLREL-----LIIGGVAARDQL  333
            A+++ P+RELA Q             ++K+  + ++    R       L+ GG     + 
Sbjct  284  AIVLAPTRELARQIYEVLEKLVSLALSLKEQNQEVEGTVRRTRWLVPGLLSGGSTKNHEK  343

Query  334  SVLENGVDIVVGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP  392
              L  G  I+V TPGRL D L +T   ++ + R+LVLDEAD LL  G+ + +  +   + 
Sbjct  344  QRLRKGCPILVSTPGRLLDHLQNTSSFDVGKCRWLVLDEADRLLEMGFEEQLTGIVRAL-  402

Query  393  QVTSDGKRLQVIVCSA  408
                DG+R   + C+A
Sbjct  403  ----DGRR--NLACTA  412


 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 13/102 (13%)

Query  545  LHGDRKPHERKQNLERFKKGDVR-----------FLICTDVAARGIDIHGVPYVINVTLP  593
            LHG     ER  +L+ F     +            L+CT VA+RG+D+  V  VI +  P
Sbjct  612  LHGSMTQQERISSLKGFSGIRTKHSAERQGFQGSILLCTSVASRGLDLPEVGCVIQLDPP  671

Query  594  DEK--QNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
             E   + Y+HR+GR  R  R G +  LV  ++     HV  S
Sbjct  672  TEGGIEEYLHRVGRTARVGRAGESWLLVLPQELGWVEHVLES  713


 Score = 38.1 bits (87),  Expect = 0.38, Method: Compositional matrix adjust.
 Identities = 18/41 (44%), Positives = 28/41 (68%), Gaps = 3/41 (7%)

Query  25   PTDIQAESIPLILGGG---DVLMAAETGSGKTGAFSIPVIQ  62
            PT IQ  ++P +L  G   D+L+ A+TGSGKT  + +P++Q
Sbjct  225  PTAIQKAALPHLLHPGLDRDILIQAQTGSGKTLTYLLPIVQ  265


>sp|A1CL59|SPB4_ASPCL ATP-dependent rRNA helicase spb4 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / 
NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=spb4 PE=3 SV=1
Length=639

 Score = 50.4 bits (119),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 54/99 (55%), Gaps = 1/99 (1%)

Query  537  GHQFSCVCLHGDRKPHERKQNLERFKKG-DVRFLICTDVAARGIDIHGVPYVINVTLPDE  595
            G  F  + LHG  + + R++N  RF        L+ TDVA+RG+DI  V  V+ +  P +
Sbjct  320  GDDFLLIPLHGKHQANVRQKNFNRFLSSHSPAILLTTDVASRGLDIPSVDLVVQIDPPSD  379

Query  596  KQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
             + ++HR GR GRA R GL++ ++   +E+ +      R
Sbjct  380  PKTFIHRCGRAGRAGRRGLSVVMLHPGREEDYVSFLDVR  418


 Score = 48.9 bits (115),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 39/136 (29%), Positives = 65/136 (48%), Gaps = 26/136 (19%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKY-------------IDNP---------KLRELLIIGG  326
            A+I+ P+RELA Q  + ++    +              D P         K+   L++GG
Sbjct  90   AIIISPTRELASQIHSVMQSLLAFHPPSAAAMTPLDDDDAPRQKFPSSTLKVVPQLLLGG  149

Query  327  --VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRF--LVLDEADGLLSQGYSD  382
                A D    L+   +++V TPGRL +L+S+  ++  Q  F  LVLDEAD LL  G+ +
Sbjct  150  STTPAEDLSRFLKLSPNVLVSTPGRLLELLSSPHVHCPQSSFEMLVLDEADRLLDLGFKE  209

Query  383  FINRMHNQIPQVTSDG  398
             +  +  ++P+    G
Sbjct  210  TLQNILRRLPKQRRTG  225


 Score = 43.5 bits (101),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 0/50 (0%)

Query  13  IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           + +A+  M +   T +QA +IPL +   DV++ A TGSGKT +F +P+++
Sbjct  25  VLEAMSSMGFARMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLLPIVE  74


>sp|Q9W3Y5|Y4443_DROME Putative ATP-dependent RNA helicase CG14443 
OS=Drosophila melanogaster OX=7227 GN=CG14443 PE=3 SV=2
Length=736

 Score = 50.1 bits (118),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 55/275 (20%), Positives = 110/275 (40%), Gaps = 63/275 (23%)

Query  341  DIVVGTPGRLDDLVSTGK--LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQI-PQVTSD  397
            D++V + GRL  ++   K  + L +  +LVLD  D ++  G    I R+  ++ P     
Sbjct  451  DLLVASAGRLLQMIDNKKHVVELERCTYLVLDNIDRMIDVGLEGNICRLLCRLRPHA---  507

Query  398  GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV-----VVPVNPKT  452
                Q+IV S+T  S ++K+++ K +   T + +   +++   + ++     VV    K 
Sbjct  508  ----QLIV-SSTSWSSNLKRMANKFLGQYTAIRVGEINNIGVRLQNIRQRVEVVNGLSKV  562

Query  453  DRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF  512
            +RL + L   +  +D                        + G+  +   ++  +++ +  
Sbjct  563  ERLMKELTAIYDTSD------------------------IPGKVVIYVKRQKVVEELVDL  598

Query  513  CRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICT  572
             R  + C+ +                       HG R   E +  +  F  G    ++ T
Sbjct  599  IRNCVPCEGI-----------------------HGGRTAQENQGIIHDFGTGAYNIIVAT  635

Query  573  DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVG  607
             + +  +D+ G+ YVIN   PD    YV R+ R G
Sbjct  636  QMTSNCLDVPGIRYVINYDFPDNIDKYVQRMSRTG  670


 Score = 35.4 bits (80),  Expect = 2.1, Method: Compositional matrix adjust.
 Identities = 18/59 (31%), Positives = 32/59 (54%), Gaps = 0/59 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            +F   G    I Q +E+  +  PT IQA++  +   G +++M +  G+GKT  + +P I
Sbjct  331  SFERSGFNATILQQLEDQGYDGPTPIQAQTWSIAKEGKNIVMISGKGTGKTLGYLLPGI  389


>sp|Q9C8J7|TRO_ARATH Protein TRAUCO OS=Arabidopsis thaliana OX=3702 
GN=TRO PE=1 SV=1
Length=509

 Score = 49.7 bits (117),  Expect = 8e-05, Method: Compositional matrix adjust.
 Identities = 55/198 (28%), Positives = 78/198 (39%), Gaps = 54/198 (27%)

Query  104  IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEV---SCHDQGLCRVGWSTMQASLD--L  158
            I  D L   S   K +   RAT+G+++G  Y+E+   S  + G  R+GWST +  L   +
Sbjct  286  ISEDRLTAGSS--KGYRMVRATRGVVEGAWYFEIKVLSLGETGHTRLGWSTDKGDLQAPV  343

Query  159  GTDKFGFGFGGT-GKKSHNKQFDNYGEE-FTMHDTIGCYLDIDKG---------------  201
            G D   FGF    G K H    + Y EE +   D IG Y+++  G               
Sbjct  344  GYDGNSFGFRDIDGCKIHKALRETYAEEGYKEGDVIGFYINLPDGESFAPKPPHYVFYKG  403

Query  202  --------------------HVKFSKNGKDLGLAFEIPPHMKNQALFPACVL------KN  235
                                 + F KNG   G AF     +     +PA  +       N
Sbjct  404  QRYICAPDAKEEPPKVVPGSEISFFKNGVCQGAAFT---DIVGGRYYPAASMYTLPDQSN  460

Query  236  AELKFNFGEEEFKFPPKD  253
              +KFNFG   F+F P+D
Sbjct  461  CLVKFNFG-PSFEFFPED  477


>sp|O13983|HRQ1_SCHPO ATP-dependent helicase hrq1 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=hrq1 
PE=1 SV=4
Length=1063

 Score = 49.7 bits (117),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 80/372 (22%), Positives = 148/372 (40%), Gaps = 52/372 (14%)

Query  266  IVKSQHSGNAQVTQTKFLP-----NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRE  320
            +  S  SG + + Q   L      N   A  V P++ LA+    ++     Y+  P L+ 
Sbjct  331  VSTSTSSGKSLIYQIPILQSLLEDNQSTAFFVFPTKSLAQDQKKSLIDILSYM--PTLKN  388

Query  321  LLII---GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGK----LNLSQVRFLVLDEA-  372
            + +    G      + S++ +  +I+   P  L   +             ++  VLDEA 
Sbjct  389  IRVDTFDGDTPLESRESIIRSA-NIIFTNPDMLHQTILPNANRWYYFFKNLKLFVLDEAH  447

Query  373  --DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVD  430
              +G+     +  + RM  +I +   + +  + + CSAT+   D  +  +KI        
Sbjct  448  VYNGIFGVHVAFVLRRMR-RIAEYFGNSQ-YRFVSCSATIE--DPLQHMKKIF-------  496

Query  431  LKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIK  490
              G D++   +++   P   K   +W     +    D  H  D  +         SEA K
Sbjct  497  --GVDNI-KLINYTSSPSGSKKFVMW-----NPPYVDPKHPDDGKKSAI------SEASK  542

Query  491  ILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCV-CLHGDR  549
            +L  ++A + ++       I+FCR +  C++L +  ++Q     +KG   S +       
Sbjct  543  LLI-KFAEKRVR------TIVFCRVRKTCESLMR-LVRQELKTKQKGDLLSKIQSYRAGY  594

Query  550  KPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA  609
               ER++       G +  +I T+    GIDI  +  VI +  P    N   + GR GR 
Sbjct  595  TVQERRKIESEMFNGKLYGIIATNALELGIDIGSLDAVITIGFPYSLSNLRQQFGRAGRR  654

Query  610  ERMGLAISLVAT  621
             +  LA+ +V T
Sbjct  655  NKSSLAVYIVET  666


>sp|Q8L840|RQL4A_ARATH ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis 
thaliana OX=3702 GN=RECQL4A PE=2 SV=1
Length=1188

 Score = 49.3 bits (116),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 35/136 (26%), Positives = 61/136 (45%), Gaps = 12/136 (9%)

Query  476  RPGANSPEMWSEAIKILKG--EYAVRAIKEHKMDQA-IIFCRTKIDCDNLEQYFIQQGGG  532
            R   N P +W   +   K   E   + IKE+  D+  II+C +++DC+ + +        
Sbjct  640  RQSFNRPNLWYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVSERL------  693

Query  533  PDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTL  592
              + GH+      HG  +P +R     ++ K ++  +  T     GI+   V +VI+ +L
Sbjct  694  -QEFGHK--AAFYHGSMEPEQRAFIQTQWSKDEINIICATVAFGMGINKPDVRFVIHHSL  750

Query  593  PDEKQNYVHRIGRVGR  608
            P   + Y    GR GR
Sbjct  751  PKSIEGYHQECGRAGR  766


>sp|Q24498|RYR_DROME Ryanodine receptor OS=Drosophila melanogaster 
OX=7227 GN=RyR PE=1 SV=3
Length=5127

 Score = 49.7 bits (117),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 31/116 (27%), Positives = 55/116 (47%), Gaps = 9/116 (8%)

Query  105   GSDGLCCQSREVKEWHGCRATK-----GLMKGKHYYEVSCHDQGLCRVGWSTMQA--SLD  157
             G++ L  +++ +K + G R  +      +  GK Y+E      G  RVGW+         
Sbjct  1062  GTEALLAEAQRLK-FAGFRTYRVERNYAVTSGKWYFEFEVLTSGPMRVGWARADCYPGAM  1120

Query  158   LGTDKFGFGFGGTG-KKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDL  212
             LG++   + F G    K H    +++G  +   D IGC++D+ +  + FS NG+ L
Sbjct  1121  LGSEDTSWAFDGHNVTKMHAGSIEHFGVRYEAGDVIGCFIDVKEQTISFSLNGELL  1176


>sp|Q9PTY5|RANB9_XENLA Ran-binding protein 9 OS=Xenopus laevis 
OX=8355 GN=ranbp9 PE=2 SV=1
Length=548

 Score = 48.9 bits (115),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 42/133 (32%), Positives = 63/133 (47%), Gaps = 15/133 (11%)

Query  131  GKHYYEV---SCHDQGLCRVGWSTMQASLDL--GTDKFGFGFGGTGKKS--HNKQFDNYG  183
            G  Y+EV   S    G   +G ST   +L+   G DK  +G+ G    S   +     YG
Sbjct  68   GIFYFEVKIISKGRDGYMGIGLSTQGVNLNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYG  127

Query  184  EEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAE--LKF  240
              FT  D IGC +++      ++KNG  LG+AF ++PP+     L+P   L+     +  
Sbjct  128  PTFTTGDVIGCCVNLIDNTCFYTKNGHSLGIAFTDLPPN-----LYPTVGLQTPGEVVDA  182

Query  241  NFGEEEFKFPPKD  253
            NFG+  F F  +D
Sbjct  183  NFGQSPFVFDIED  195


>sp|Q1LUS8|RBP10_DANRE Ran-binding protein 10 OS=Danio rerio OX=7955 
GN=ranbp10 PE=3 SV=1
Length=604

 Score = 48.1 bits (113),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 15/133 (11%)

Query  131  GKHYYEV---SCHDQGLCRVGWSTMQASLDL--GTDKFGFGFGGTGKKS--HNKQFDNYG  183
            G +Y+EV   S    G   +G S    +++   G DK  +G+ G    S   +     YG
Sbjct  89   GIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYG  148

Query  184  EEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAE--LKF  240
              FT  D IGC +++      ++KNG  LG+AF ++PP+     L+P   L+     +  
Sbjct  149  PTFTTGDVIGCCVNLINNTCFYTKNGHSLGVAFTDLPPN-----LYPTVGLQTPGEIVDA  203

Query  241  NFGEEEFKFPPKD  253
            NFG++ F F  +D
Sbjct  204  NFGQQPFVFDIED  216


>sp|Q28FM1|RANB9_XENTR Ran-binding protein 9 OS=Xenopus tropicalis 
OX=8364 GN=ranbp9 PE=2 SV=1
Length=548

 Score = 48.1 bits (113),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 42/133 (32%), Positives = 62/133 (47%), Gaps = 15/133 (11%)

Query  131  GKHYYEV---SCHDQGLCRVGWSTMQASLDL--GTDKFGFGFGGTGKKS--HNKQFDNYG  183
            G  Y+EV   S    G   +G ST   +L    G DK  +G+ G    S   +     YG
Sbjct  68   GIFYFEVKIISKGRDGYMGIGLSTQGVNLSRLPGWDKHSYGYHGDDGHSFCSSGTGQPYG  127

Query  184  EEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAE--LKF  240
              FT  D IGC +++      ++KNG  LG+AF ++PP+     L+P   L+     +  
Sbjct  128  PTFTTGDVIGCCVNLIDNTCFYTKNGHSLGIAFTDLPPN-----LYPTVGLQTPGEVVDA  182

Query  241  NFGEEEFKFPPKD  253
            NFG+  F F  +D
Sbjct  183  NFGQSPFVFDIED  195


>sp|A1L252|RANB9_DANRE Ran-binding protein 9 OS=Danio rerio OX=7955 
GN=ranbp9 PE=2 SV=1
Length=597

 Score = 48.1 bits (113),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 15/133 (11%)

Query  131  GKHYYEV---SCHDQGLCRVGWSTMQASLDL--GTDKFGFGFGGTGKKS--HNKQFDNYG  183
            G +Y+EV   S    G   +G S    +++   G DK  +G+ G    S   +     YG
Sbjct  95   GVYYFEVKIISKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYG  154

Query  184  EEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAE--LKF  240
              FT  D IGC +++      ++KNG  LG+AF ++PP+     L+P   L+     +  
Sbjct  155  PTFTTGDVIGCCVNLINNTCFYTKNGHSLGIAFTDLPPN-----LYPTVGLQTPGEVVDA  209

Query  241  NFGEEEFKFPPKD  253
            NFG+  F F  +D
Sbjct  210  NFGQHPFVFDIED  222


>sp|Q6VN19|RBP10_MOUSE Ran-binding protein 10 OS=Mus musculus 
OX=10090 GN=Ranbp10 PE=1 SV=2
Length=620

 Score = 47.8 bits (112),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 13/132 (10%)

Query  131  GKHYYEV---SCHDQGLCRVGWSTMQASLDL--GTDKFGFGFGGTGKKS--HNKQFDNYG  183
            G +Y+EV   S    G   +G S    +++   G DK  +G+ G    S   +     YG
Sbjct  101  GIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYG  160

Query  184  EEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAE--LKFN  241
              FT  D IGC +++  G   ++KNG  LG+AF   P      L+P   L+     +  N
Sbjct  161  PTFTTGDVIGCCVNLINGTCFYTKNGHSLGIAFTDLP----ANLYPTVGLQTPGEIVDAN  216

Query  242  FGEEEFKFPPKD  253
            FG++ F F  +D
Sbjct  217  FGQQPFLFDIED  228


>sp|Q96S59|RANB9_HUMAN Ran-binding protein 9 OS=Homo sapiens OX=9606 
GN=RANBP9 PE=1 SV=1
Length=729

 Score = 47.8 bits (112),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 15/133 (11%)

Query  131  GKHYYEV---SCHDQGLCRVGWSTMQASLDL--GTDKFGFGFGGTGKKS--HNKQFDNYG  183
            G +Y+EV   S    G   +G S    +++   G DK  +G+ G    S   +     YG
Sbjct  213  GIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYG  272

Query  184  EEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAE--LKF  240
              FT  D IGC +++      ++KNG  LG+AF ++PP+     L+P   L+     +  
Sbjct  273  PTFTTGDVIGCCVNLINNTCFYTKNGHSLGIAFTDLPPN-----LYPTVGLQTPGEVVDA  327

Query  241  NFGEEEFKFPPKD  253
            NFG+  F F  +D
Sbjct  328  NFGQHPFVFDIED  340


>sp|P69566|RANB9_MOUSE Ran-binding protein 9 OS=Mus musculus OX=10090 
GN=Ranbp9 PE=1 SV=1
Length=653

 Score = 47.8 bits (112),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 15/133 (11%)

Query  131  GKHYYEV---SCHDQGLCRVGWSTMQASLDL--GTDKFGFGFGGTGKKS--HNKQFDNYG  183
            G +Y+EV   S    G   +G S    +++   G DK  +G+ G    S   +     YG
Sbjct  138  GIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYG  197

Query  184  EEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAE--LKF  240
              FT  D IGC +++      ++KNG  LG+AF ++PP+     L+P   L+     +  
Sbjct  198  PTFTTGDVIGCCVNLINNTCFYTKNGHSLGIAFTDLPPN-----LYPTVGLQTPGEVVDA  252

Query  241  NFGEEEFKFPPKD  253
            NFG+  F F  +D
Sbjct  253  NFGQHPFVFDIED  265


>sp|Q6VN20|RBP10_HUMAN Ran-binding protein 10 OS=Homo sapiens 
OX=9606 GN=RANBP10 PE=1 SV=1
Length=620

 Score = 47.8 bits (112),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 13/132 (10%)

Query  131  GKHYYEV---SCHDQGLCRVGWSTMQASLDL--GTDKFGFGFGGTGKKS--HNKQFDNYG  183
            G +Y+EV   S    G   +G S    +++   G DK  +G+ G    S   +     YG
Sbjct  101  GIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYG  160

Query  184  EEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAE--LKFN  241
              FT  D IGC +++  G   ++KNG  LG+AF   P      L+P   L+     +  N
Sbjct  161  PTFTTGDVIGCCVNLINGTCFYTKNGHSLGIAFTDLP----ANLYPTVGLQTPGEIVDAN  216

Query  242  FGEEEFKFPPKD  253
            FG++ F F  +D
Sbjct  217  FGQQPFLFDIED  228


>sp|A3KMV8|RBP10_BOVIN Ran-binding protein 10 OS=Bos taurus OX=9913 
GN=RANBP10 PE=2 SV=1
Length=620

 Score = 47.8 bits (112),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 13/132 (10%)

Query  131  GKHYYEV---SCHDQGLCRVGWSTMQASLDL--GTDKFGFGFGGTGKKS--HNKQFDNYG  183
            G +Y+EV   S    G   +G S    +++   G DK  +G+ G    S   +     YG
Sbjct  101  GIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYG  160

Query  184  EEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAE--LKFN  241
              FT  D IGC +++  G   ++KNG  LG+AF   P      L+P   L+     +  N
Sbjct  161  PTFTTGDVIGCCVNLINGTCFYTKNGHSLGIAFTDLP----ANLYPTVGLQTPGEIVDAN  216

Query  242  FGEEEFKFPPKD  253
            FG++ F F  +D
Sbjct  217  FGQQPFLFDIED  228


>sp|O34748|RECQ_BACSU ATP-dependent DNA helicase RecQ OS=Bacillus 
subtilis (strain 168) OX=224308 GN=recQ PE=1 SV=1
Length=591

 Score = 47.4 bits (111),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 35/141 (25%), Positives = 63/141 (45%), Gaps = 15/141 (11%)

Query  472  KDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH----KMDQAIIFCRTKIDCDNLEQYFI  527
            K+NT     S E  +   K++KGE   R I E+    + +  I++  T+ + D + +   
Sbjct  194  KENTVYTGFSRENLT--FKVVKGENKDRFIDEYVQNNRHEAGIVYTATRKEADRIYERL-  250

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
                    K +Q      HG      RK+  ERF   +++ ++ T     GID   + +V
Sbjct  251  --------KRNQVRAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMGIDKSNIRFV  302

Query  588  INVTLPDEKQNYVHRIGRVGR  608
            ++  +P + ++Y    GR GR
Sbjct  303  LHAQIPKDMESYYQEAGRAGR  323


>sp|O94712|YC5C_SCHPO Uncharacterized protein C1259.12c OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC1259.12c 
PE=4 SV=2
Length=491

 Score = 46.6 bits (109),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 101/245 (41%), Gaps = 45/245 (18%)

Query  28   IQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASV  87
            I  +++PL L G        T  G+    S P      + L++    ++G  T  T  ++
Sbjct  21   INFDNLPLYLQG--------TNYGENVLRSDPRWLKWEKYLREFDMTREGNVT-NTPKAI  71

Query  88   LNKWQMNPYDRGSAFAIGSDGLCC-----------QSREVKEWHGCRATKGLMKGKHYYE  136
             + W  NP D+  +  + ++ +              +  VK  H   +   +    +YYE
Sbjct  72   PSSW--NPNDKSDSLELMNNNMGVYFFGPEAGTEHDAASVKADHAIPSNTSI----YYYE  125

Query  137  VSCHDQG--------LCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHN--KQFDNYGEEF  186
            +    +G         CR    +MQ +   G     +G+ G   +  N  K  + YG EF
Sbjct  126  IQILSRGKEGKMGVGFCR---KSMQTNRLPGCTAESWGYHGNSGEKFNCSKTGEAYGPEF  182

Query  187  TMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKN--AELKFNFGE  244
            T  D IGC ++     + ++KNG  LG+AF+      +  L+P   LK+    ++ NFG+
Sbjct  183  TTGDIIGCGVNFINRTIFYTKNGAYLGVAFK----KVSDVLYPVIGLKSHGEHVEVNFGQ  238

Query  245  EEFKF  249
              F +
Sbjct  239  NPFLY  243


>sp|A8WK63|RECQ1_CAEBR Putative ATP-dependent DNA helicase Q1 
OS=Caenorhabditis briggsae OX=6238 GN=CBG24191 PE=3 SV=1
Length=618

 Score = 46.6 bits (109),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 32/115 (28%), Positives = 54/115 (47%), Gaps = 10/115 (9%)

Query  495  EYAVRAIK-EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
            E  VR IK +      II+C ++ DC+ L +    +  G   K +       H   +P +
Sbjct  297  EKIVRTIKRKFSGKTGIIYCLSRNDCEKLAKSL--KANGIRAKHY-------HAYMEPVD  347

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
            R    +++  G+++ ++ T     GID   V +VI+ +LP   +NY    GR GR
Sbjct  348  RSAAHQKWVSGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQESGRAGR  402


>sp|P11716|RYR1_RABIT Ryanodine receptor 1 OS=Oryctolagus cuniculus 
OX=9986 GN=RYR1 PE=1 SV=1
Length=5037

 Score = 46.6 bits (109),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 25/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)

Query  123   RATKG--LMKGKHYYEVSCHDQGLCRVGWST--MQASLDLGTDKFGFGFGGTGKKSHNKQ  178
             RA K   +  G+ Y+E      G  RVGW+   ++  ++LG D+  + F G   +  +  
Sbjct  1076  RAEKSYTVQSGRWYFEFEAVTTGEMRVGWARPELRPDVELGADELAYVFNGHRGQRWHLG  1135

Query  179   FDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDL  212
              + +G  +   D +GC +D+ +  + F+ NG+ L
Sbjct  1136  SEPFGRPWQSGDVVGCMIDLTENTIIFTLNGEVL  1169


 Score = 35.8 bits (81),  Expect = 2.3, Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 34/63 (54%), Gaps = 6/63 (10%)

Query  191   TIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPAC-VLKNAE--LKFNFGEEEF  247
              IGC +D+  G + F+ NGK+    F++ P   N  LFPA  VL   +  ++F  G+++ 
Sbjct  1515  VIGCLVDLATGLMTFTANGKESNTFFQVEP---NTKLFPAVFVLPTHQNVIQFELGKQKN  1571

Query  248   KFP  250
               P
Sbjct  1572  IMP  1574


>sp|P16960|RYR1_PIG Ryanodine receptor 1 OS=Sus scrofa OX=9823 
GN=RYR1 PE=2 SV=2
Length=5035

 Score = 46.6 bits (109),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 25/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)

Query  123   RATK--GLMKGKHYYEVSCHDQGLCRVGWST--MQASLDLGTDKFGFGFGGTGKKSHNKQ  178
             RA K   +  G+ Y+E      G  RVGW+   ++  ++LG D+  + F G   +  +  
Sbjct  1076  RAEKSYAVQSGRWYFEFEAVTTGEMRVGWARPELRPDVELGADELAYVFNGHRGQRWHLG  1135

Query  179   FDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDL  212
              + +G  +   D +GC +D+ +  + F+ NG+ L
Sbjct  1136  SELFGRPWQSGDVVGCMIDLTENTIIFTLNGEVL  1169


 Score = 35.8 bits (81),  Expect = 2.1, Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 34/63 (54%), Gaps = 6/63 (10%)

Query  191   TIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPAC-VLKNAE--LKFNFGEEEF  247
              IGC +D+  G + F+ NGK+    F++ P   N  LFPA  VL   +  ++F  G+++ 
Sbjct  1515  VIGCLVDLATGLMTFTANGKESNTFFQVEP---NTKLFPAVFVLPTHQNVIQFELGKQKN  1571

Query  248   KFP  250
               P
Sbjct  1572  IMP  1574


>sp|P21817|RYR1_HUMAN Ryanodine receptor 1 OS=Homo sapiens OX=9606 
GN=RYR1 PE=1 SV=3
Length=5038

 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 25/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)

Query  123   RATKG--LMKGKHYYEVSCHDQGLCRVGWST--MQASLDLGTDKFGFGFGGTGKKSHNKQ  178
             RA K   +  G+ Y+E      G  RVGW+   ++  ++LG D+  + F G   +  +  
Sbjct  1075  RAEKSYTVQSGRWYFEFEAVTTGEMRVGWARPELRPDVELGADELAYVFNGHRGQRWHLG  1134

Query  179   FDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDL  212
              + +G  +   D +GC +D+ +  + F+ NG+ L
Sbjct  1135  SEPFGRPWQPGDVVGCMIDLTENTIIFTLNGEVL  1168


 Score = 35.8 bits (81),  Expect = 2.2, Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 34/63 (54%), Gaps = 6/63 (10%)

Query  191   TIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPAC-VLKNAE--LKFNFGEEEF  247
              IGC +D+  G + F+ NGK+    F++ P   N  LFPA  VL   +  ++F  G+++ 
Sbjct  1514  VIGCLVDLATGLMTFTANGKESNTFFQVEP---NTKLFPAVFVLPTHQNVIQFELGKQKN  1570

Query  248   KFP  250
               P
Sbjct  1571  IMP  1573


>sp|A7EQ00|SSH4_SCLS1 Protein ssh4 OS=Sclerotinia sclerotiorum 
(strain ATCC 18683 / 1980 / Ss-1) OX=665079 GN=ssh4 PE=3 SV=1
Length=523

 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 57/125 (46%), Gaps = 11/125 (9%)

Query  133  HYYEVSCHDQG---LCRVGWSTMQASLDL--GTDKFGFGFGGTGKKSHNKQFDN--YGEE  185
            +Y+E   +D+    L  +G +T    L    G  K+   +  TG + +N+ F    YG +
Sbjct  204  YYWESKIYDKPENTLISIGVATKPYPLFRLPGWHKYSVAYTSTGHRRYNQPFSGPVYGPQ  263

Query  186  FTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNA-ELKFNFGE  244
            +   D IG       G + F++NGK L    ++   +K+Q LFPA        +  NFG+
Sbjct  264  YVQGDVIGVGYRPRTGTIFFTRNGKKLE---DVAHGLKSQNLFPAVGANGPCTVHVNFGQ  320

Query  245  EEFKF  249
              F F
Sbjct  321  SGFVF  325


>sp|E9PZQ0|RYR1_MOUSE Ryanodine receptor 1 OS=Mus musculus OX=10090 
GN=Ryr1 PE=1 SV=1
Length=5035

 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 25/94 (27%), Positives = 46/94 (49%), Gaps = 4/94 (4%)

Query  123   RATK--GLMKGKHYYEVSCHDQGLCRVGWST--MQASLDLGTDKFGFGFGGTGKKSHNKQ  178
             RA K   +  G+ Y+E      G  RVGW+   ++  ++LG D   + F G   +  +  
Sbjct  1077  RAEKSYAVQSGRWYFEFEAVTTGEMRVGWARPELRPDVELGADDLAYVFNGHRGQRWHLG  1136

Query  179   FDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDL  212
              + +G  +   D +GC +D+ +  + F+ NG+ L
Sbjct  1137  SEPFGRPWQSGDVVGCMIDLTENTIIFTLNGEVL  1170


 Score = 35.4 bits (80),  Expect = 2.6, Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 34/63 (54%), Gaps = 6/63 (10%)

Query  191   TIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPAC-VLKNAE--LKFNFGEEEF  247
              IGC +D+  G + F+ NGK+    F++ P   N  LFPA  VL   +  ++F  G+++ 
Sbjct  1516  VIGCLVDLATGLMTFTANGKESNTFFQVEP---NTKLFPAVFVLPTHQNVVQFELGKQKN  1572

Query  248   KFP  250
               P
Sbjct  1573  IMP  1575


>sp|Q75NR7|RECQ4_MOUSE ATP-dependent DNA helicase Q4 OS=Mus musculus 
OX=10090 GN=Recql4 PE=2 SV=2
Length=1216

 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 89/241 (37%), Gaps = 33/241 (14%)

Query  506  MDQAIIFC-RTKID---------CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERK  555
            +D  II+C R +I          C ++      +G GP+     +     H      ER+
Sbjct  722  LDSVIIYCTRERIQNGWLALLRTCLSMVGDSRPRGCGPEAIAEAY-----HAGMSSQERR  776

Query  556  QNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLA  615
            +  + F +G +R ++ T     G+D   V  V+++ LP   ++YV  IGR GR  +    
Sbjct  777  RVQQAFMRGHLRMVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAIGRAGRDGKPAHC  836

Query  616  ISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEP  675
               +  + E +W              R       T +    +L+  +     C+   V  
Sbjct  837  HLFMHPQGEDLW------------ELRRHAHADSTDFLAVKRLVQRVFPPCTCSQRPVSK  884

Query  676  DIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILA--PTVQELAALEKEAQTSFLHLGYLP  733
                 V E  G+ TY       G +  GH   L    TVQ L   E+  +T   +L   P
Sbjct  885  SSPEEVKEHSGQQTY----PVLGQACLGHERALPVQSTVQALDMTEEAIETLLCYLELHP  940

Query  734  N  734
             
Sbjct  941  R  941


>sp|O88700|BLM_MOUSE RecQ-like DNA helicase BLM OS=Mus musculus 
OX=10090 GN=Blm PE=1 SV=1
Length=1416

 Score = 45.8 bits (107),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 28/108 (26%), Positives = 46/108 (43%), Gaps = 10/108 (9%)

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
            K H  D  II+C ++ +CD +     ++G          + +  H       R +   ++
Sbjct  892  KHHPYDSGIIYCLSRRECDTMADTLQREG---------LAALAYHAGLSDSARDEVQHKW  942

Query  562  KKGDVRFLICTDVA-ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
               D   +IC  +A   GID   V +VI+ +LP   + Y    GR GR
Sbjct  943  INQDNCQVICATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAGR  990


>sp|A6S3E0|SSH4_BOTFB Protein ssh4 OS=Botryotinia fuckeliana (strain 
B05.10) OX=332648 GN=ssh4 PE=3 SV=1
Length=537

 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 57/125 (46%), Gaps = 11/125 (9%)

Query  133  HYYEVSCHDQG---LCRVGWSTMQASLDL--GTDKFGFGFGGTGKKSHNKQFDN--YGEE  185
            +Y+E   +D+    L  +G +T    L    G  K+   +  TG + +N+ F    YG +
Sbjct  218  YYWESKIYDKPENTLISIGVATKPYPLFRLPGWHKYSVAYTSTGHRRYNQPFSGPVYGPQ  277

Query  186  FTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNA-ELKFNFGE  244
            +   D IG       G + F++NGK L    ++   +K+Q LFPA        +  NFG+
Sbjct  278  YVQGDVIGVGYRPRTGTIFFTRNGKKLE---DVAHGLKSQNLFPAVGANGPCTVHVNFGQ  334

Query  245  EEFKF  249
              F F
Sbjct  335  SGFVF  339


>sp|A2AGL3|RYR3_MOUSE Ryanodine receptor 3 OS=Mus musculus OX=10090 
GN=Ryr3 PE=1 SV=1
Length=4863

 Score = 45.8 bits (107),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 33/128 (26%), Positives = 57/128 (45%), Gaps = 9/128 (7%)

Query  131   GKHYYEVSCHDQGLCRVGWST--MQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTM  188
             GK Y+E      G  RVGW+    +  ++LG D   F F G+  +  ++    +G  +  
Sbjct  1085  GKWYFEFEVVTGGDMRVGWARPGCRPDIELGADDQAFVFEGSRGQRWHQGSGYFGRTWQP  1144

Query  189   HDTIGCYLDIDKGHVKFSKNGKDL----GLAFEIPPHMKNQALFPACVLKNAEL-KFNFG  243
              D +GC +++D   + F+ NG+ L    G       +       P C L  +++ + N G
Sbjct  1145  GDVVGCMINLDDASMVFTLNGELLITNKGSELAFADYEIENGFVPICSLGLSQIGRMNLG  1204

Query  244   EE--EFKF  249
              +   FKF
Sbjct  1205  TDASTFKF  1212


 Score = 42.7 bits (99),  Expect = 0.015, Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 34/62 (55%), Gaps = 6/62 (10%)

Query  192   IGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLK---NAELKFNFGEEEFK  248
             IGC LD+  G + FS NGK+LG  +++ P   N  +FPA  L+    +  +F  G+ +  
Sbjct  1411  IGCLLDLAMGMLSFSANGKELGTCYQVEP---NTKVFPAVFLQPTSTSLFQFELGKLKNA  1467

Query  249   FP  250
              P
Sbjct  1468  MP  1469


>sp|Q1E2D2|SSH4_COCIM Protein SSH4 OS=Coccidioides immitis (strain 
RS) OX=246410 GN=SSH4 PE=3 SV=1
Length=494

 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 11/125 (9%)

Query  133  HYYEVSCHDQ---GLCRVGWSTMQASLDL--GTDKFGFGFGGTGKKSHNKQFDN--YGEE  185
            +Y+E   +D+    L  +G +T    L    G  K    +  TG + HN+ F    YG E
Sbjct  217  YYWEAKIYDKPETSLISIGMTTKPYPLFRLPGFHKTSISYQSTGHRRHNQPFTPTLYGPE  276

Query  186  FTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNA-ELKFNFGE  244
            F   D +G       G + F++NGK L    ++   +K+Q  FP         +  NFG+
Sbjct  277  FVQGDVVGVGYRPRSGTIFFTRNGKKLE---DVAHGLKSQNFFPTVGANGPCTVHVNFGQ  333

Query  245  EEFKF  249
              F F
Sbjct  334  LGFVF  338


>sp|O88838|SPSB2_MOUSE SPRY domain-containing SOCS box protein 
2 OS=Mus musculus OX=10090 GN=Spsb2 PE=1 SV=1
Length=264

 Score = 43.9 bits (102),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 54/217 (25%), Positives = 92/217 (42%), Gaps = 33/217 (15%)

Query  94   NPYDRGSAFAIGSDGLCCQSREVKE-WHGCRATKGLMKGKHYYEVS--CHDQGL-CRVGW  149
            NP D      +   GLC + R V +   G R  +G  +G H +E+S     +G    VG 
Sbjct  49   NPKDCSENIDVKEGGLCFERRPVAQSTDGVRGKRGYSRGLHAWEISWPLEQRGTHAVVGV  108

Query  150  STMQASLD-------LGTDKFGFGFG-GTGKKSHNK---QFDNY-----GEEFTMHDTIG  193
            +T  A L        LG++   +G+  G GK  H     +   Y     GE+  + + + 
Sbjct  109  ATALAPLQADHYAALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLL  168

Query  194  CYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFP--ACVLKNAELKFNF-GEEEFKFP  250
              LD+++G + +S  G  LG AF     +K + L+P  + V    +++  + GE   + P
Sbjct  169  VVLDMEEGTLGYSIGGTYLGPAFR---GLKGRTLYPSVSAVWGQCQVRIRYMGERRVEEP  225

Query  251  PKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP  287
                 + LS+     +      G+ ++ Q   LP  P
Sbjct  226  --QSLLHLSR-----LCVRHALGDTRLGQISTLPLPP  255


>sp|Q15413|RYR3_HUMAN Ryanodine receptor 3 OS=Homo sapiens OX=9606 
GN=RYR3 PE=1 SV=3
Length=4870

 Score = 45.1 bits (105),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 33/128 (26%), Positives = 56/128 (44%), Gaps = 9/128 (7%)

Query  131   GKHYYEVSCHDQGLCRVGWST--MQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTM  188
             GK Y+E      G  RVGW+    +  ++LG D   F F G   +  ++    +G  +  
Sbjct  1085  GKWYFEFEVVTGGDMRVGWARPGCRPDVELGADDQAFVFEGNRGQRWHQGSGYFGRTWQP  1144

Query  189   HDTIGCYLDIDKGHVKFSKNGKDL----GLAFEIPPHMKNQALFPACVLKNAEL-KFNFG  243
              D +GC +++D   + F+ NG+ L    G       +       P C L  +++ + N G
Sbjct  1145  GDVVGCMINLDDASMIFTLNGELLITNKGSELAFADYEIENGFVPICCLGLSQIGRMNLG  1204

Query  244   EE--EFKF  249
              +   FKF
Sbjct  1205  TDASTFKF  1212


 Score = 41.6 bits (96),  Expect = 0.036, Method: Compositional matrix adjust.
 Identities = 21/62 (34%), Positives = 35/62 (56%), Gaps = 6/62 (10%)

Query  192   IGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLK---NAELKFNFGEEEFK  248
             IGC +D+  G + FS NGK+LG  +++ P+ K   +FPA  L+    +  +F  G+ +  
Sbjct  1411  IGCLVDLAMGMLSFSANGKELGTCYQVEPNTK---VFPAVFLQPTSTSLFQFELGKLKNA  1467

Query  249   FP  250
              P
Sbjct  1468  MP  1469


>sp|Q5M877|SPSB2_RAT SPRY domain-containing SOCS box protein 2 
OS=Rattus norvegicus OX=10116 GN=Spsb2 PE=2 SV=1
Length=264

 Score = 43.5 bits (101),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 105/259 (41%), Gaps = 37/259 (14%)

Query  54   GAFSIPVIQIVYETLKDQQ--EGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
            G+ S P    +Y  L   +  E          GA   + W  NP D      +   GLC 
Sbjct  9    GSSSTPSSHALYSDLSPPEGLEELLSAPPPDLGAQRHHGW--NPKDCSENIDVKEGGLCF  66

Query  112  QSREVKE-WHGCRATKGLMKGKHYYEVS--CHDQGL-CRVGWSTMQASLD-------LGT  160
            + R V +   G R  +G  +G H +E+S     +G    VG +T  A L        LG+
Sbjct  67   ERRPVAQSTDGVRGKRGYSRGLHAWEISWPLEQRGTHAVVGVATALAPLQADHYAALLGS  126

Query  161  DKFGFGFG-GTGKKSHNK---QFDNY-----GEEFTMHDTIGCYLDIDKGHVKFSKNGKD  211
            +   +G+  G GK  H     +   Y     GE+  + + +   LD+++G + +S  G  
Sbjct  127  NSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEEGTLGYSIGGTY  186

Query  212  LGLAFEIPPHMKNQALFP--ACVLKNAELKFNF-GEEEFKFPPKDGFVALSKAPDGYIVK  268
            LG AF     +K + L+P  + V    +++  + GE   + P     + LS+     +  
Sbjct  187  LGPAFR---GLKGRTLYPSVSAVWGQCQVRIRYLGERRAEEP--QSLLHLSR-----LCV  236

Query  269  SQHSGNAQVTQTKFLPNAP  287
                G+ ++ Q   LP  P
Sbjct  237  RHALGDTRLGQISSLPLPP  255


>sp|Q5M9B1|SPSB3_XENLA SPRY domain-containing SOCS box protein 
3 OS=Xenopus laevis OX=8355 GN=spsb3 PE=2 SV=1
Length=360

 Score = 43.9 bits (102),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 15/119 (13%)

Query  123  RATKGLMKGKHYYEVSCHDQGL---CRVGWSTMQASLD---------LGTDKFGFGFGGT  170
            R  K L +G+H++E+            VG  T   +LD         LG D   +G   T
Sbjct  139  RGNKMLTEGQHFWEIKMTSPVYGTDMMVGIGTSDVNLDKYRHTFCSLLGKDAESWGLSYT  198

Query  171  GKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFP  229
            G   H     N+   F     IG +LD   G + F KN K +G+A      ++N+ LFP
Sbjct  199  GLLQHKGDKSNFSSRFGQGSIIGVHLDTWHGVLTFYKNRKRIGVA---ATQLRNKKLFP  254


>sp|Q9TXJ8|RECQ1_CAEEL Putative ATP-dependent DNA helicase Q1 
OS=Caenorhabditis elegans OX=6239 GN=K02F3.12 PE=3 SV=3
Length=631

 Score = 44.3 bits (103),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 33/133 (25%), Positives = 57/133 (43%), Gaps = 18/133 (14%)

Query  476  RPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDK  535
            +PG+   E   E  K +K ++A +          II+C ++ DC+ + +           
Sbjct  311  KPGSED-ECTEEIAKTIKRDFAGQT--------GIIYCLSRNDCEKVAKAL---------  352

Query  536  KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDE  595
            K H       H   +P +R    + +  G ++ ++ T     GID   V +VI+ +LP  
Sbjct  353  KSHGIKAKHYHAYMEPVDRSGAHQGWISGKIQVIVATVAFGMGIDKPNVRFVIHHSLPKS  412

Query  596  KQNYVHRIGRVGR  608
             +NY    GR GR
Sbjct  413  IENYYQESGRAGR  425


>sp|A1CNW8|SSH4_ASPCL Protein ssh4 OS=Aspergillus clavatus (strain 
ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / 
QM 1276 / 107) OX=344612 GN=ssh4 PE=3 SV=1
Length=511

 Score = 43.9 bits (102),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 11/125 (9%)

Query  133  HYYEVSCHDQ---GLCRVGWSTMQASLDL--GTDKFGFGFGGTGKKSHNKQFDN--YGEE  185
            +Y+E   +D+    L  VG +T    L    G  K+   +  TG + HN+ F +  YG  
Sbjct  223  YYWEAKIYDKPENTLVSVGMTTKPYPLFRLPGFHKYSVAYSSTGHRRHNQPFASTPYGPP  282

Query  186  FTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNA-ELKFNFGE  244
             +  D IG       G + F++NGK L    ++    K Q  FP         +  NFG+
Sbjct  283  LSQGDVIGVGYRPRSGTIFFTRNGKKLE---DVVHAAKTQNFFPTVGANGPCTVHVNFGQ  339

Query  245  EEFKF  249
              F F
Sbjct  340  MGFVF  344


>sp|P54132|BLM_HUMAN RecQ-like DNA helicase BLM OS=Homo sapiens 
OX=9606 GN=BLM PE=1 SV=1
Length=1417

 Score = 44.3 bits (103),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 28/108 (26%), Positives = 46/108 (43%), Gaps = 10/108 (9%)

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
            K H  D  II+C ++ +CD +     + G          + +  H       R +  +++
Sbjct  884  KHHPYDSGIIYCLSRRECDTMADTLQRDG---------LAALAYHAGLSDSARDEVQQKW  934

Query  562  KKGDVRFLICTDVA-ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
               D   +IC  +A   GID   V +VI+ +LP   + Y    GR GR
Sbjct  935  INQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGR  982


>sp|F4JFJ3|Y3206_ARATH ATP-dependent DNA helicase At3g02060, chloroplastic 
OS=Arabidopsis thaliana OX=3702 GN=At3g02060 PE=2 
SV=1
Length=823

 Score = 43.5 bits (101),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 3/68 (4%)

Query  546  HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVI--NVTLPDEKQNYVHRI  603
            HG +   + ++ +ERF +G ++ LICT++   G+DI     +I  +V      Q Y  R 
Sbjct  513  HGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLR-  571

Query  604  GRVGRAER  611
            GRVGRA++
Sbjct  572  GRVGRADK  579


>sp|Q9DEY9|BLM_XENLA RecQ-like DNA helicase BLM OS=Xenopus laevis 
OX=8355 GN=blm PE=2 SV=1
Length=1364

 Score = 43.9 bits (102),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 29/108 (27%), Positives = 45/108 (42%), Gaps = 10/108 (9%)

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
            K H  D  II+C ++ +CD +     ++G          + +  H       R     ++
Sbjct  836  KHHPNDSGIIYCLSRHECDTMADTLQKEG---------LAALAYHAGLADSNRDYVQHKW  886

Query  562  KKGDVRFLICTDVA-ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
               D   +IC  +A   GID   V YVI+ +LP   + Y    GR GR
Sbjct  887  INQDDCQVICATIAFGMGIDKPDVRYVIHASLPKSVEGYYQESGRAGR  934


>sp|Q28DT9|SPSB3_XENTR SPRY domain-containing SOCS box protein 
3 OS=Xenopus tropicalis OX=8364 GN=spsb3 PE=2 SV=1
Length=360

 Score = 42.7 bits (99),  Expect = 0.008, Method: Compositional matrix adjust.
 Identities = 34/119 (29%), Positives = 50/119 (42%), Gaps = 15/119 (13%)

Query  123  RATKGLMKGKHYYEVSCHDQGL---CRVGWSTMQASLD---------LGTDKFGFGFGGT  170
            R  + L +G+H++E+            VG  T   +LD         LG D   +G   T
Sbjct  139  RGNRMLTEGQHFWEIKMTSPVYGTDMMVGIGTSDVNLDKYRHTFCSLLGKDAESWGLSYT  198

Query  171  GKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFP  229
            G   H     N+   F     IG +LD   G + F KN K +G+A      ++N+ LFP
Sbjct  199  GLLQHKGDKSNFSSRFGQGSIIGVHLDTWHGVLTFYKNRKCIGVA---ATQLRNKKLFP  254


>sp|Q05549|HRQ1_YEAST ATP-dependent helicase HRQ1 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=HRQ1 
PE=1 SV=1
Length=1077

 Score = 43.5 bits (101),  Expect = 0.009, Method: Compositional matrix adjust.
 Identities = 98/442 (22%), Positives = 165/442 (37%), Gaps = 75/442 (17%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
            S+  K  GL FE+ P                E+      E F     D   +L +  +  
Sbjct  266  SRTAKYKGLCFELAP----------------EVYQGMEHENFYSHQADAINSLHQGENVI  309

Query  266  IVKSQHSGNA---QVTQTKFLPNAPKA--LIVEPSRELAEQTLNNIKQFKKYIDNPKLRE  320
            I  S  SG +   Q+     L   P++  + + P++ LA+      K     I  P+L+ 
Sbjct  310  ITTSTSSGKSLIYQLAAIDLLLKDPESTFMYIFPTKALAQDQKRAFKVILSKI--PELKN  367

Query  321  LLI--IGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN----LSQVRFLVLDEA--  372
             ++    G    ++ + +     ++   P  +   +     N    L  ++ +V+DE   
Sbjct  368  AVVDTYDGDTEPEERAYIRKNARVIFTNPDMIHTSILPNHANWRHFLYHLKLVVVDELHI  427

Query  373  -DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL  431
              GL     +  + R+  ++     +   LQ I CSATL S  V+ +  K M     V L
Sbjct  428  YKGLFGSHVALVMRRLL-RLCHCFYENSGLQFISCSATLKS-PVQHM--KDMFGINEVTL  483

Query  432  KGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
              ED  P    H+VV  NP      ER  ++ IR                     E+ KI
Sbjct  484  IHEDGSPTGAKHLVV-WNPPILPQHERKRENFIR---------------------ESAKI  521

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL----EQYFIQQGGGPDKKGHQFSCVCLHG  547
            L     V+ I  +   + I FC  +  C+ L       FI+ G    ++      +   G
Sbjct  522  L-----VQLILNNV--RTIAFCYVRRVCELLMKEVRNIFIETG----REDLVTEVMSYRG  570

Query  548  DRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVG  607
                 +R++       G+++ +I T+    GIDI G+  V+    P    N+  + GR G
Sbjct  571  GYSASDRRKIEREMFHGNLKAVISTNALELGIDIGGLDAVLMCGFPLSMANFHQQSGRAG  630

Query  608  RAERMGLAISLVATEKEKVWYH  629
            R  R   +++LV      V  H
Sbjct  631  R--RNNDSLTLVVASDSPVDQH  650


>sp|G5EFZ3|ASH2_CAEEL Set1/Ash2 histone methyltransferase complex 
subunit ash-2 OS=Caenorhabditis elegans OX=6239 GN=ash-2 
PE=1 SV=1
Length=570

 Score = 43.1 bits (100),  Expect = 0.009, Method: Compositional matrix adjust.
 Identities = 32/87 (37%), Positives = 45/87 (52%), Gaps = 9/87 (10%)

Query  123  RATKGLMKGKHYYEVSCHDQ---GLCRVGWSTMQASLD--LGTDKFGFGFGGT-GKKSHN  176
            RA+ G+ KG  Y+EV+  DQ      R+GWS   ASL   +G +KF +G+    G K H 
Sbjct  329  RASHGVSKGTWYFEVNFDDQPDDSHIRIGWSQSYASLQACVGYNKFSYGWRSKHGTKFHE  388

Query  177  KQFDNYG-EEFTMHDTIGC--YLDIDK  200
             +   Y    F   D +GC  +L +DK
Sbjct  389  AKGKKYHFGGFKQGDVLGCLIHLPVDK  415


>sp|Q9FT70|RQL4B_ARATH ATP-dependent DNA helicase Q-like 4B OS=Arabidopsis 
thaliana OX=3702 GN=RECQL4B PE=2 SV=1
Length=1150

 Score = 43.5 bits (101),  Expect = 0.009, Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 12/136 (9%)

Query  476  RPGANSPEMWSEAIKILKG--EYAVRAIKEHKMDQA-IIFCRTKIDCDNLEQYFIQQGGG  532
            R   N P +W   +       E   + I+E+  D+  II+C +++DC+ + +        
Sbjct  656  RQSFNRPNLWYSVVPKTNKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVTEAL------  709

Query  533  PDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTL  592
                GH+      HG   P +R    +++ K ++  +  T     GI+   V +VI+ +L
Sbjct  710  -RVFGHK--AAFYHGSMDPGKRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSL  766

Query  593  PDEKQNYVHRIGRVGR  608
            P   + Y    GR GR
Sbjct  767  PKSIEGYHQECGRAGR  782


>sp|Q0WVW7|RQL5_ARATH ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis 
thaliana OX=3702 GN=RECQL5 PE=2 SV=2
Length=911

 Score = 42.7 bits (99),  Expect = 0.012, Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 9/104 (9%)

Query  510  IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL  569
            I++C+ + + D + +Y   +    + KG+       H      +R +  E F    +R +
Sbjct  490  IVYCKFQYETDMISKYL--RDNNINAKGY-------HSGLPAKDRVRIQESFCSNKIRVV  540

Query  570  ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
            + T     G+D   V  VI+ ++P   + YV  IGR GR  R+ 
Sbjct  541  VATVAFGMGLDKGDVGAVIHFSVPGSMEEYVQEIGRAGRDGRLS  584


>sp|Q99619|SPSB2_HUMAN SPRY domain-containing SOCS box protein 
2 OS=Homo sapiens OX=9606 GN=SPSB2 PE=1 SV=1
Length=263

 Score = 41.6 bits (96),  Expect = 0.014, Method: Compositional matrix adjust.
 Identities = 61/258 (24%), Positives = 103/258 (40%), Gaps = 36/258 (14%)

Query  54   GAFSIPVIQIVYETLK--DQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
            G+ S P  Q +Y  L   +  E          GA   + W  NP D      +   GL  
Sbjct  9    GSSSTPTPQALYPDLSCPEGLEELLSAPPPDLGAQRRHGW--NPKDCSENIEVKEGGLYF  66

Query  112  QSREVKE-WHGCRATKGLMKGKHYYEVS--CHDQGL-CRVGWSTMQASLD-------LGT  160
            + R V +   G R  +G  +G H +E+S     +G    VG +T  A L        LG+
Sbjct  67   ERRPVAQSTDGARGKRGYSRGLHAWEISWPLEQRGTHAVVGVATALAPLQTDHYAALLGS  126

Query  161  DKFGFGFG-GTGKKSHNKQ--------FDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKD  211
            +   +G+  G GK  H  +            GE+  + + +   LD+++G + ++  G  
Sbjct  127  NSESWGWDIGRGKLYHQSKGPGAPQYPAGTQGEQLEVPERLLVVLDMEEGTLGYAIGGTY  186

Query  212  LGLAFEIPPHMKNQALFPA--CVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKS  269
            LG AF     +K + L+PA   V    +++  +  E    P     + LS+     +   
Sbjct  187  LGPAFR---GLKGRTLYPAVSAVWGQCQVRIRYLGERRAEP--HSLLHLSR-----LCVR  236

Query  270  QHSGNAQVTQTKFLPNAP  287
             + G+ ++ Q   LP  P
Sbjct  237  HNLGDTRLGQVSALPLPP  254


>sp|F4INA9|RECG_ARATH ATP-dependent DNA helicase homolog RECG, 
chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RECG PE=3 
SV=1
Length=973

 Score = 42.7 bits (99),  Expect = 0.015, Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 42/78 (54%), Gaps = 1/78 (1%)

Query  535  KKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD  594
            KK  +++C  LHG  K  ++++ L +F+ G+ + L+ T V   G+D+     ++ +    
Sbjct  792  KKFPKYNCGLLHGRMKSDDKEEALNKFRSGETQILLSTQVIEIGVDVPDASMMVVMNAER  851

Query  595  EKQNYVHRI-GRVGRAER  611
                 +H++ GRVGR  R
Sbjct  852  FGIAQLHQLRGRVGRGTR  869


>sp|Q6FJJ8|MRH4_CANGA ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / 
JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=MRH4 
PE=3 SV=1
Length=568

 Score = 42.4 bits (98),  Expect = 0.015, Method: Compositional matrix adjust.
 Identities = 29/95 (31%), Positives = 50/95 (53%), Gaps = 12/95 (13%)

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDL-----VSTGKLNLSQVRFLVLDEADGLLSQGY  380
            GV  +  L  L++  DI++ TP +L  L     +S   L L ++ F+VLDEAD LL + +
Sbjct  247  GVDYQQLLENLKSRTDILITTPSKLLSLQRVRMISRADLILKRIEFVVLDEADTLLDKSW  306

Query  381  SDFINRMHNQIPQVTSDGKRLQVIVCSATL-HSFD  414
             +  ++    +  V        +++CSAT+ + FD
Sbjct  307  LEDTHKALKAMSDVN------HLVLCSATIPNEFD  335


 Score = 41.6 bits (96),  Expect = 0.027, Method: Compositional matrix adjust.
 Identities = 21/62 (34%), Positives = 34/62 (55%), Gaps = 1/62 (2%)

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +R L+ TD+ ARG++  GV  VI   +P    + VHR GR  R  + G  + ++  +K +
Sbjct  493  LRVLVTTDLLARGLNFKGVRNVILYDVPITAIDLVHRAGRTARMRQSG-RVFMIIDKKTQ  551

Query  626  VW  627
             W
Sbjct  552  SW  553


>sp|O94761|RECQ4_HUMAN ATP-dependent DNA helicase Q4 OS=Homo sapiens 
OX=9606 GN=RECQL4 PE=1 SV=2
Length=1208

 Score = 42.7 bits (99),  Expect = 0.016, Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 11/111 (10%)

Query  506  MDQAIIFCRTKIDCDN--------LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQN  557
            +D  II+C  + D +         L   ++   GG   +  + +    H      ER++ 
Sbjct  700  LDSIIIYCNRREDTERIAALLRTCLHAAWVPGSGG---RAPKTTAEAYHAGMCSRERRRV  756

Query  558  LERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
               F +G +R ++ T     G+D   V  V+++ LP   ++YV  +GR GR
Sbjct  757  QRAFMQGQLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGR  807


>sp|P15043|RECQ_ECOLI ATP-dependent DNA helicase RecQ OS=Escherichia 
coli (strain K12) OX=83333 GN=recQ PE=1 SV=5
Length=609

 Score = 42.0 bits (97),  Expect = 0.021, Method: Compositional matrix adjust.
 Identities = 23/111 (21%), Positives = 49/111 (44%), Gaps = 9/111 (8%)

Query  498  VRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQN  557
            +R ++E +    II+C ++   ++       +G          S    H   + + R   
Sbjct  228  MRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKG---------ISAAAYHAGLENNVRADV  278

Query  558  LERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
             E+F++ D++ ++ T     GI+   V +V++  +P   ++Y    GR GR
Sbjct  279  QEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGR  329


>sp|Q9I920|BLM_CHICK RecQ-like DNA helicase BLM OS=Gallus gallus 
OX=9031 GN=BLM PE=1 SV=2
Length=1183

 Score = 42.0 bits (97),  Expect = 0.021, Method: Compositional matrix adjust.
 Identities = 29/113 (26%), Positives = 46/113 (41%), Gaps = 10/113 (9%)

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
            K H  D  II+C ++ +CD       ++G          + +  H       R    +++
Sbjct  655  KYHPHDSGIIYCLSRHECDTTAAILQKEG---------LAALAYHAGLTDSNRDLVQKKW  705

Query  562  KKGDVRFLICTDVA-ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
               +   +IC  +A   GID   V YVI+ +LP   + Y    GR GR   M 
Sbjct  706  VNQEGCQVICATIAFGMGIDKPDVRYVIHASLPKSIEGYYQESGRAGRDGEMS  758


>sp|Q5N870|DCL3A_ORYSJ Endoribonuclease Dicer homolog 3a OS=Oryza 
sativa subsp. japonica OX=39947 GN=DCL3A PE=2 SV=1
Length=1651

 Score = 42.0 bits (97),  Expect = 0.028, Method: Compositional matrix adjust.
 Identities = 38/138 (28%), Positives = 57/138 (41%), Gaps = 22/138 (16%)

Query  476  RPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDK  535
            + G  SP+++ E I+I        +    +  + +IF   KI    +++          K
Sbjct  392  KTGYISPKLY-ELIQIF------HSFSNSRHARCLIFVDRKITARVIDRMI-------KK  437

Query  536  KGH--QFSCVCLHGDRK------PHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
             GH   F+   L G R       P  +K  L+ F+ G V  L  TDVA  GI +     V
Sbjct  438  IGHLAHFTVSFLTGGRSSVDALTPKMQKDTLDSFRSGKVNLLFTTDVAEEGIHVPECSCV  497

Query  588  INVTLPDEKQNYVHRIGR  605
            I   LP   ++YV   GR
Sbjct  498  IRFDLPRTTRSYVQSRGR  515


>sp|Q96A44|SPSB4_HUMAN SPRY domain-containing SOCS box protein 
4 OS=Homo sapiens OX=9606 GN=SPSB4 PE=1 SV=1
Length=273

 Score = 40.8 bits (94),  Expect = 0.031, Method: Compositional matrix adjust.
 Identities = 51/224 (23%), Positives = 94/224 (42%), Gaps = 32/224 (14%)

Query  48   TGSGKTGAFSIPVIQIVYETLKDQQEGKKGKT-----TIKTGASVLNKWQMNPYDRG-SA  101
            +GS K+     P ++     L+  + G+  +          G +V  +   NP DR  + 
Sbjct  6    SGSLKSVEVREPALRPAKRELRGAEPGRPARLDQLLDMPAAGLAVQLRHAWNPEDRSLNV  65

Query  102  FAIGSDGLCCQSREVKE-WHGCRATKGLMKGKHYYEVS--CHDQGL-CRVGWSTMQASLD  157
            F    D L      V +   G R   G  +G H ++++     +G    VG +T +A L 
Sbjct  66   FVKDDDRLTFHRHPVAQSTDGIRGKVGHARGLHAWQINWPARQRGTHAVVGVATARAPLH  125

Query  158  -------LGTDKFGFGFG-GTGKKSHNKQ---------FDNYGEEFTMHDTIGCYLDIDK  200
                   +G+D   +G+  G  +  H+ +         F    E F + D++   LD+D+
Sbjct  126  SVGYTALVGSDAESWGWDLGRSRLYHDGKNQPGVAYPAFLGPDEAFALPDSLLVVLDMDE  185

Query  201  GHVKFSKNGKDLGLAFEIPPHMKNQALFP--ACVLKNAELKFNF  242
            G + F  +G+ LG+AF     +K + L+P  + V  + E+   +
Sbjct  186  GTLSFIVDGQYLGVAFR---GLKGKKLYPVVSAVWGHCEVTMRY  226


>sp|Q9TS33|RYR3_RABIT Ryanodine receptor 3 OS=Oryctolagus cuniculus 
OX=9986 GN=RYR3 PE=1 SV=1
Length=4872

 Score = 41.6 bits (96),  Expect = 0.037, Method: Compositional matrix adjust.
 Identities = 21/62 (34%), Positives = 34/62 (55%), Gaps = 6/62 (10%)

Query  192   IGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLK---NAELKFNFGEEEFK  248
             IGC +D+  G + FS NGK+LG  +++ P   N  +FPA  L+    +  +F  G+ +  
Sbjct  1411  IGCLVDLAMGMLSFSANGKELGTCYQVEP---NTKVFPAVFLQPTSTSLFQFELGKLKNA  1467

Query  249   FP  250
              P
Sbjct  1468  MP  1469


 Score = 35.8 bits (81),  Expect = 2.3, Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 9/128 (7%)

Query  131   GKHYYEVSCHDQGLCRVGWST--MQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTM  188
             GK Y+E      G  RVGW+    +  ++LG           G     K     G  +  
Sbjct  1085  GKWYFEFEVVTGGDMRVGWARPGCRPDIELGPMTKPLCLKAAGASVGTKVVGILGVPWQP  1144

Query  189   HDTIGCYLDIDKGHVKFSKNGKDL----GLAFEIPPHMKNQALFPACVLKNAEL-KFNFG  243
              D +GC +++D   + F+ NG+ L    G       +       P C L  +++ + N G
Sbjct  1145  GDVVGCMINLDDASMIFTLNGELLITNKGSELAFADYEIENGFVPICSLGLSQIGRMNLG  1204

Query  244   EE--EFKF  249
              +   FKF
Sbjct  1205  TDASTFKF  1212


>sp|Q2VPA6|HELQ_MOUSE Helicase POLQ-like OS=Mus musculus OX=10090 
GN=Helq PE=1 SV=2
Length=1069

 Score = 41.2 bits (95),  Expect = 0.038, Method: Compositional matrix adjust.
 Identities = 67/297 (23%), Positives = 115/297 (39%), Gaps = 67/297 (23%)

Query  350  LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSAT  409
            ++ L+ T +L  S +  +V+DE   ++ +G    I  M   + +V    K  Q+I  SAT
Sbjct  404  VNALIETSRL--STLGLVVVDELH-MIGEGSRGAILEM--TLAKVLYTSKTTQIIGMSAT  458

Query  410  LHSFDVKKLSEKIMHFPTW---VDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            L++ +  +   K  ++ +    V+LK    V DT++ V                      
Sbjct  459  LNNVEDLQAFLKAEYYTSQFRPVELKEFLKVNDTIYEV----------------------  496

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA-IIFCRTKIDCDNLEQY  525
             D  A D           +SEA+K +  +  V  + E   + + ++FC +K +C+N+ + 
Sbjct  497  -DSQAADGMTFSRLLSYKYSEALKKMDPDRLVALVTEVIPNYSCLVFCPSKKNCENVAEM  555

Query  526  ---FIQQ--------------------GGGPD----KKGHQFSCVCLHGDRKPHERKQNL  558
               F+ +                    G G      K+   F     H      ERK   
Sbjct  556  LCKFLSKDYLNHREKEKCEVIKSLRNIGNGKVCPVLKRTVPFGIAYHHSGLTSEERKLLE  615

Query  559  ERFKKGDVRFLICTDVAARGIDIHG------VPYVINVTLPDEKQNYVHRIGRVGRA  609
            E +  G +  L CT   A G+++         PYV N  L  ++  Y   +GR GRA
Sbjct  616  EAYSTGVLCLLTCTSTLAAGVNLPARRVILRAPYVANTFL--KRNQYKQMVGRAGRA  670


>sp|Q9BQ75|CMS1_HUMAN Protein CMSS1 OS=Homo sapiens OX=9606 GN=CMSS1 
PE=1 SV=2
Length=279

 Score = 40.4 bits (93),  Expect = 0.042, Method: Compositional matrix adjust.
 Identities = 21/45 (47%), Positives = 30/45 (67%), Gaps = 1/45 (2%)

Query  327  VAARDQLSVLENGV-DIVVGTPGRLDDLVSTGKLNLSQVRFLVLD  370
            +  + Q+ +LE  V  + VGTPGR+ +LV  G LNLS ++FLV D
Sbjct  192  IKVQAQVKLLEKRVVHLGVGTPGRIKELVKQGGLNLSPLKFLVFD  236


>sp|Q9CL21|RECQ_PASMU ATP-dependent DNA helicase RecQ OS=Pasteurella 
multocida (strain Pm70) OX=272843 GN=recQ PE=3 SV=1
Length=632

 Score = 41.2 bits (95),  Expect = 0.042, Method: Compositional matrix adjust.
 Identities = 29/135 (21%), Positives = 55/135 (41%), Gaps = 10/135 (7%)

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
            E   R +   K    II+C ++   + + +    +G          S    H   +  +R
Sbjct  238  EQLCRFVLGQKGKSGIIYCNSRSKVERIAESLRNKG---------VSAQAYHAGLETSQR  288

Query  555  KQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGL  614
            +Q    F++ +V+ ++ T     GI+   V +V++  LP   ++Y    GR GR +    
Sbjct  289  EQVQRAFQRDNVQVVVATIAFGMGINKSNVRFVVHFDLPRSIESYYQETGRAGRDDLPAE  348

Query  615  AISLVATEKEKVWYH  629
            A+ L     +  W H
Sbjct  349  AV-LFYEPADYAWLH  362


>sp|Q8R5F7|IFIH1_MOUSE Interferon-induced helicase C domain-containing 
protein 1 OS=Mus musculus OX=10090 GN=Ifih1 PE=1 SV=1
Length=1025

 Score = 40.8 bits (94),  Expect = 0.047, Method: Compositional matrix adjust.
 Identities = 34/137 (25%), Positives = 60/137 (44%), Gaps = 6/137 (4%)

Query  479  ANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDK--K  536
            A +P+  +E +  L+     +  +  +  + IIF +T+     L Q+ ++     +   K
Sbjct  691  AENPKYENEKLIKLRNTILEQFTRSEESSRGIIFTKTRQSTYALSQWIMENAKFAEVGVK  750

Query  537  GHQFSCVCLHGDRKPH---ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP  593
             H         + KP    E+K+ + +F+ G++  LI T VA  G+DI     VI   L 
Sbjct  751  AHHLIGAGHSSEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVIRYGLV  810

Query  594  DEKQNYVHRIGRVGRAE  610
              +   V   GR  RA+
Sbjct  811  TNEIAMVQARGR-ARAD  826


>sp|Q9BYX4|IFIH1_HUMAN Interferon-induced helicase C domain-containing 
protein 1 OS=Homo sapiens OX=9606 GN=IFIH1 PE=1 SV=3
Length=1025

 Score = 40.8 bits (94),  Expect = 0.055, Method: Compositional matrix adjust.
 Identities = 35/137 (26%), Positives = 59/137 (43%), Gaps = 6/137 (4%)

Query  479  ANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDK--K  536
            A +PE  +E +  L+     +  +  +  + IIF +T+     L Q+  +     +   K
Sbjct  691  AENPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVK  750

Query  537  GHQFSCVCLHGDRKP---HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP  593
             H         + KP   +E+K+ + +F+ G +  LI T VA  G+DI     VI   L 
Sbjct  751  AHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLV  810

Query  594  DEKQNYVHRIGRVGRAE  610
              +   V   GR  RA+
Sbjct  811  TNEIAMVQARGR-ARAD  826


>sp|Q8R5B6|SPSB4_MOUSE SPRY domain-containing SOCS box protein 
4 OS=Mus musculus OX=10090 GN=Spsb4 PE=1 SV=1
Length=273

 Score = 40.0 bits (92),  Expect = 0.056, Method: Compositional matrix adjust.
 Identities = 51/224 (23%), Positives = 93/224 (42%), Gaps = 32/224 (14%)

Query  48   TGSGKTGAFSIPVIQIVYETLKDQQEGKKGKT-----TIKTGASVLNKWQMNPYDRG-SA  101
            +GS K+     P ++     L+  + G+  +          G +V  +   NP DR  + 
Sbjct  6    SGSLKSVEVREPALRPAKRELRGLEPGRPARLDQLLDMPAAGLAVQLRHAWNPEDRSLNV  65

Query  102  FAIGSDGLCCQSREVKE-WHGCRATKGLMKGKHYYEV--SCHDQGL-CRVGWSTMQASLD  157
            F    D L      V +   G R   G  +G H +++      +G    VG +T +A L 
Sbjct  66   FVKDDDRLTFHRHPVAQSTDGIRGKVGHARGLHAWQIHWPARQRGTHAVVGVATARAPLH  125

Query  158  -------LGTDKFGFGFG-GTGKKSHNKQ---------FDNYGEEFTMHDTIGCYLDIDK  200
                   +G+D   +G+  G  +  H+ +         F    E F + D++   LD+D+
Sbjct  126  SVGYTALVGSDSESWGWDLGRSRLYHDGKNRPGVAYPAFLGPDEAFALPDSLLVVLDMDE  185

Query  201  GHVKFSKNGKDLGLAFEIPPHMKNQALFP--ACVLKNAELKFNF  242
            G + F  +G+ LG+AF     +K + L+P  + V  + E+   +
Sbjct  186  GTLSFIVDGQYLGVAFR---GLKGKKLYPVVSAVWGHCEVTMRY  226


>sp|O09053|WRN_MOUSE Bifunctional 3'-5' exonuclease/ATP-dependent 
helicase WRN OS=Mus musculus OX=10090 GN=Wrn PE=1 SV=3
Length=1401

 Score = 40.8 bits (94),  Expect = 0.057, Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 33/69 (48%), Gaps = 0/69 (0%)

Query  540  FSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNY  599
             +C   H   K  ERK    RF + +++ ++ T     GI+   +  VI+   P E ++Y
Sbjct  754  LACRTYHAGMKISERKDVHHRFLRDEIQCVVATVAFGMGINKADIRKVIHYGAPKEMESY  813

Query  600  VHRIGRVGR  608
               IGR GR
Sbjct  814  YQEIGRAGR  822


>sp|P85199|RH3_HELAN DEAD-box ATP-dependent RNA helicase 3 (Fragment) 
OS=Helianthus annuus OX=4232 PE=1 SV=1
Length=234

 Score = 39.7 bits (91),  Expect = 0.064, Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 45/78 (58%), Gaps = 4/78 (5%)

Query  3    AFSEMGVMPEIAQAVEE--MDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            A S +G+  ++ + +E+  +  L P  IQ   +   L G D++  A+TG+GKT AF+IP+
Sbjct  121  AVSRLGLPQKLVETLEKRGITKLFP--IQRAVLVPALEGRDIIGRAKTGTGKTLAFAIPI  178

Query  61   IQIVYETLKDQQEGKKGK  78
            I+ + E  +D +    G+
Sbjct  179  IKRLTEEDEDNRNSLAGR  196


 Score = 33.5 bits (75),  Expect = 5.9, Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 25/42 (60%), Gaps = 5/42 (12%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
            P+ L++ P+RELA+Q    IK+       P LR + + GGV+
Sbjct  198  PRVLVLAPTRELAKQVETEIKE-----PAPYLRTVCVYGGVS  234


>sp|Q75AA7|MPH1_EREGS ATP-dependent DNA helicase MPH1 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=MPH1 PE=3 SV=2
Length=1077

 Score = 40.4 bits (93),  Expect = 0.074, Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 36/68 (53%), Gaps = 1/68 (1%)

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM  612
            ++K+ +  FKKGD   L+CT +   G+DI  V  +I           + R+GR GR +R 
Sbjct  560  QQKEVISLFKKGDYNVLVCTSIGEEGLDIGEVDMIICYDTTSSPIKNIQRMGRTGR-KRD  618

Query  613  GLAISLVA  620
            G  + L++
Sbjct  619  GRIVLLLS  626


>sp|P58174|UVRB_MYCPU UvrABC system protein B OS=Mycoplasmopsis 
pulmonis (strain UAB CTIP) OX=272635 GN=uvrB PE=3 SV=1
Length=657

 Score = 40.0 bits (92),  Expect = 0.075, Method: Compositional matrix adjust.
 Identities = 31/111 (28%), Positives = 51/111 (46%), Gaps = 15/111 (14%)

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
            K ++ +I   TK   + L +YF ++G              +H D K  ER + L + +KG
Sbjct  442  KNERTLILTTTKRFSEELTRYFQEKGE---------KVAYIHSDHKTFERNEILRKLRKG  492

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHR----IGRVGRAER  611
                +I  ++   GID+  V  VI   L  +K++++      I  VGRA R
Sbjct  493  VYDLVIGINLLREGIDLPEVSLVI--ILDADKESFLRNTKSLIQIVGRASR  541


>sp|Q58969|Y1574_METJA Uncharacterized ATP-dependent helicase 
MJ1574 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / 
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ1574 
PE=3 SV=1
Length=684

 Score = 40.0 bits (92),  Expect = 0.076, Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 11/143 (8%)

Query  490  KILKGEYAVRAIKEHKMD---QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLH  546
            K L  +  +R + E+ +D   + ++F  T+ + + L ++ +       K  ++ S     
Sbjct  257  KNLDNKQLLRRLIENLVDNNIKTLVFFDTRKETEKLMRFLLNS-----KVFYKLSTY--K  309

Query  547  GDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTL-PDEKQNYVHRIGR  605
            G    + R++  E+FK G++  L+ T+    GIDI  +  VIN  + PD   + + R GR
Sbjct  310  GTLPKYVREEIEEKFKNGEILALLTTNALELGIDIGDLDAVINYGIPPDGIFSLIQRFGR  369

Query  606  VGRAERMGLAISLVATEKEKVWY  628
             GR ++  L I ++  +    +Y
Sbjct  370  AGRRDKEALNIIVLRKDGLDYYY  392


>sp|Q9ZJ57|MFD_HELPJ Transcription-repair-coupling factor OS=Helicobacter 
pylori (strain J99 / ATCC 700824) OX=85963 GN=mfd 
PE=3 SV=1
Length=1001

 Score = 40.4 bits (93),  Expect = 0.077, Method: Compositional matrix adjust.
 Identities = 24/90 (27%), Positives = 43/90 (48%), Gaps = 9/90 (10%)

Query  539  QFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQN  598
            +     LH     +E ++ +  F KG+ + L+CT +   GI +       N  + D  QN
Sbjct  717  KLKIAILHSQINANESEEIMLEFAKGNYQVLLCTSIVESGIHLPNA----NTIIIDNAQN  772

Query  599  Y----VHRI-GRVGRAERMGLAISLVATEK  623
            +    +H++ GRVGR ++ G    L+  +K
Sbjct  773  FGLADLHQLRGRVGRGKKEGFCYFLIEDQK  802


>sp|O26066|MFD_HELPY Transcription-repair-coupling factor OS=Helicobacter 
pylori (strain ATCC 700392 / 26695) OX=85962 GN=mfd 
PE=3 SV=1
Length=999

 Score = 40.4 bits (93),  Expect = 0.080, Method: Compositional matrix adjust.
 Identities = 24/90 (27%), Positives = 43/90 (48%), Gaps = 9/90 (10%)

Query  539  QFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQN  598
            +     LH     +E ++ +  F KG+ + L+CT +   GI +       N  + D  QN
Sbjct  715  KLKIAILHSQINANESEEIMLEFAKGNYQVLLCTSIVESGIHLPNA----NTIIIDNAQN  770

Query  599  Y----VHRI-GRVGRAERMGLAISLVATEK  623
            +    +H++ GRVGR ++ G    L+  +K
Sbjct  771  FGLADLHQLRGRVGRGKKEGFCYFLIEDQK  800


>sp|Q58900|Y1505_METJA Putative ATP-dependent RNA helicase MJ1505 
OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 
2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ1505 
PE=3 SV=2
Length=778

 Score = 40.0 bits (92),  Expect = 0.081, Method: Compositional matrix adjust.
 Identities = 26/85 (31%), Positives = 46/85 (54%), Gaps = 4/85 (5%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            K LI+ PSR L EQ  N +KQ    ID  K+  + + G +  + +  + + G  I + TP
Sbjct  59   KVLILAPSRPLVEQHYNRLKQVLN-IDEDKI--IALTGKIQPKKRAELYKKG-KIFIATP  114

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEA  372
              +++ +  G++N+ +   L+ DEA
Sbjct  115  QVIENDIIAGRINVDEFILLIADEA  139


 Score = 37.0 bits (84),  Expect = 0.74, Method: Compositional matrix adjust.
 Identities = 33/118 (28%), Positives = 54/118 (46%), Gaps = 19/118 (16%)

Query  501  IKEHKMDQAIIFCRTKIDCDNLEQYFIQQG-------GGPDKKGHQFSCVCLHGDRKPHE  553
            ++++K ++ IIF + +   + +     Q G       G  +K+G   S           E
Sbjct  347  LEKNKDERIIIFAQYRDTVEKIVNLLTQNGIKAIRFIGQANKEGKGMS---------QKE  397

Query  554  RKQNLERFKK-GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAE  610
            + + +ERFKK G V  L+ T V+  GIDI  V Y+I       +  ++ R GR  R E
Sbjct  398  QIEAIERFKKEGSV--LVSTSVSEEGIDIPSVNYIIFYEPVPSEIRFIQRRGRAMRGE  453


>sp|Q9VGI8|BLM_DROME RecQ-like DNA helicase Blm OS=Drosophila 
melanogaster OX=7227 GN=Blm PE=1 SV=1
Length=1487

 Score = 40.4 bits (93),  Expect = 0.082, Method: Compositional matrix adjust.
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 9/99 (9%)

Query  510   IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL  569
             II+C ++ +CD   +   + G            V  H      +R+   + +  G +R +
Sbjct  962   IIYCLSRKECDETSKKMCKDG---------VRAVSYHAGLTDTDRESRQKDWLTGKMRVI  1012

Query  570   ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
               T     GID   V +V++ +LP   + Y    GR GR
Sbjct  1013  CATVAFGMGIDKPDVRFVLHYSLPKSIEGYYQEAGRAGR  1051


>sp|A7LFZ6|DCL4_ORYSJ Endoribonuclease Dicer homolog 4 OS=Oryza 
sativa subsp. japonica OX=39947 GN=DCL4 PE=2 SV=1
Length=1657

 Score = 40.4 bits (93),  Expect = 0.084, Method: Compositional matrix adjust.
 Identities = 70/309 (23%), Positives = 115/309 (37%), Gaps = 45/309 (15%)

Query  334  SVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGL-------LSQGYSDFIN-  385
            SV    ++ VV +P    ++   G +N S +  + + E D L       L     DF + 
Sbjct  251  SVDNEELESVVASPDM--EVYFYGPVNHSNLTTICIKELDSLKLQSERMLRASLCDFKDS  308

Query  386  --------RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSV  437
                    R+H  I     +      +  + T  SFD  KL  +       VDL G  S 
Sbjct  309  QKKLKSLWRLHENIIFCLQELGSFGALQAARTFLSFDGDKLDRR------EVDLNG--ST  360

Query  438  PDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYA  497
                HH +   N  T  L      S  +TD  HA          P  +S    +L    +
Sbjct  361  SSFAHHYL---NGATSIL------SRNKTDGSHAGSFDLEKLEEP-FFSNKFSVLINVLS  410

Query  498  VRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQN  557
               ++E+   + I+F + +I         +Q     +    +F   C  G +     K +
Sbjct  411  RYGLQENM--KCIVFVK-RITVARAISNILQNLKCLEFWKCEFLVGCHSGSKNMSRNKMD  467

Query  558  --LERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLA  615
              ++RF  G+V  L+ T V   G+DI     V+   LP+   +++   GR     RM  +
Sbjct  468  AIVQRFSSGEVNLLVATSVGEEGLDIQTCCLVVRFDLPETVASFIQSRGRA----RMTKS  523

Query  616  ISLVATEKE  624
              +V  E+E
Sbjct  524  KYVVLLERE  532


>sp|P35187|SGS1_YEAST ATP-dependent helicase SGS1 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SGS1 
PE=1 SV=1
Length=1447

 Score = 40.0 bits (92),  Expect = 0.085, Method: Compositional matrix adjust.
 Identities = 27/110 (25%), Positives = 45/110 (41%), Gaps = 10/110 (9%)

Query  500  AIKEHKMDQA-IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNL  558
            A+K    +Q  II+C +K  C+       + G           C   H   +P ER    
Sbjct  893  AVKSRFKNQTGIIYCHSKKSCEQTSAQMQRNG---------IKCAYYHAGMEPDERLSVQ  943

Query  559  ERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
            + ++  +++ +  T     GID   V +V + T+P   + Y    GR GR
Sbjct  944  KAWQADEIQVICATVAFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAGR  993


>sp|P54509|YQHH_BACSU Uncharacterized ATP-dependent helicase YqhH 
OS=Bacillus subtilis (strain 168) OX=224308 GN=yqhH PE=3 
SV=1
Length=557

 Score = 40.0 bits (92),  Expect = 0.089, Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 85/193 (44%), Gaps = 16/193 (8%)

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
            D+ IIF   +     L Q+F+QQ G         S V   G  K   +K  ++   +G +
Sbjct  373  DKVIIFTEYRATQIYL-QWFLQQNG--------ISSVPFRGGFK-RGKKDWMKDLFRGKI  422

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR-AERMGLAISLVATEKEK  625
            + LI T+    GI++    ++IN  LP        RIGR+ R  +   + I  +AT K  
Sbjct  423  QVLIATEAGGEGINLQFCNHMINYDLPWNPMRLEQRIGRIHRLGQERDVHIYNMAT-KHT  481

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTI--SQVEPDIKVPVDE  683
            V  H+     +  +    K  G       ++Q ++  EEHL+  +  S  E ++K+ +D 
Sbjct  482  VEEHILKLLYEKIHLFE-KVVGELDDILTKIQ-VNNFEEHLHDILYHSATEEEMKIKMDN  539

Query  684  FDGKVTYGQKRAA  696
                ++Y ++  A
Sbjct  540  LTSFLSYKKQLPA  552


>sp|P40724|RECQ_SALTY ATP-dependent DNA helicase RecQ OS=Salmonella 
typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 
GN=recQ PE=3 SV=3
Length=609

 Score = 40.0 bits (92),  Expect = 0.094, Method: Compositional matrix adjust.
 Identities = 23/111 (21%), Positives = 48/111 (43%), Gaps = 9/111 (8%)

Query  498  VRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQN  557
            +R ++E +    II+C ++   ++       +G          S    H   +   R   
Sbjct  228  MRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRG---------ISAAAYHAGLENAIRVDV  278

Query  558  LERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
             E+F++ D++ ++ T     GI+   V +V++  +P   ++Y    GR GR
Sbjct  279  QEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGR  329


>sp|Q5XJK9|CMS1_DANRE Protein CMSS1 OS=Danio rerio OX=7955 GN=cmss1 
PE=2 SV=1
Length=291

 Score = 39.3 bits (90),  Expect = 0.10, Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 9/100 (9%)

Query  299  AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVD-IVVGTPGRLDDLVSTG  357
            A +T++ IKQ   +    K+ +L     +   +Q+  L  GV  I VGTPGR+  L+   
Sbjct  177  ALRTIDLIKQLVTFKGQAKVLKLFA-KHIKVEEQIKSLSKGVTHIAVGTPGRICALLEKE  235

Query  358  KLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD  397
             L +  +R+LVLD         Y D   R    +P+V  D
Sbjct  236  GLTVQGLRYLVLD-------WNYRDQKQRRMVDVPEVKGD  268


>sp|Q652L2|HIRA_ORYSJ Protein HIRA OS=Oryza sativa subsp. japonica 
OX=39947 GN=Os09g0567700 PE=2 SV=1
Length=975

 Score = 40.0 bits (92),  Expect = 0.10, Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 105/281 (37%), Gaps = 30/281 (11%)

Query  68   LKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATKG  127
            L   Q+ K        GAS  +  +  PY+     AIGS     Q R +  W    A + 
Sbjct  278  LSSGQDAKAAPAGWANGASKASSKEHQPYN---VIAIGS-----QDRTITVWTTASA-RP  328

Query  128  LMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD-----NY  182
            L   KH++  S  D      G+S    SLD     F F     G +  + + D      Y
Sbjct  329  LFVAKHFFTQSVVDLSWSPDGYSLFACSLDGSVATFHFEAKELGYRLRDAELDELKKNRY  388

Query  183  GEEFTMHDTIG---CYLDIDKGHVKFSKNGKDLGL-AFEIPPHMKNQALFPACVLKNAEL  238
            G+       I      L +++   K S + K   +  F+ PP +   A  P+  + N + 
Sbjct  389  GDVRGRQSNIAESPAQLLLEEASAKQSASKKVSSVQQFQSPPKVSTDAPNPSTSVPNQKA  448

Query  239  KFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKF-LPNAPKALIVEPSRE  297
                 E+E K        A S A D   +      ++ V Q ++  P+  K +I E    
Sbjct  449  PEALPEDEKK-------TAGSTADD---INKAPRLSSPVKQREYRRPDGRKRIIPEAVGF  498

Query  298  LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
             + Q ++N  Q  + +D   L + +I+G    R   S   N
Sbjct  499  PSNQDMSNRSQ-NQGVDFSSLDQRMILGENGTRPSYSASGN  538


>sp|Q9UT23|MPH1_SCHPO ATP-dependent DNA helicase fml1 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=fml1 
PE=1 SV=2
Length=834

 Score = 39.7 bits (91),  Expect = 0.10, Method: Compositional matrix adjust.
 Identities = 24/86 (28%), Positives = 40/86 (47%), Gaps = 5/86 (6%)

Query  556  QNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLA  615
            + +++F+KG+V  LI T +   G+DI  V  +I           + R+GR GR  +  + 
Sbjct  483  ETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYDASASPIRMLQRMGRTGRKRKGYIY  542

Query  616  ISLVATEKEKVWYHVCSSRGKGCYNT  641
            + L   ++E  W      R K  Y T
Sbjct  543  MLLTRGKEEAKW-----ERAKDAYRT  563


>sp|Q68EV5|CMS1_XENLA Protein CMSS1 OS=Xenopus laevis OX=8355 
GN=cmss1 PE=2 SV=1
Length=277

 Score = 38.9 bits (89),  Expect = 0.11, Method: Compositional matrix adjust.
 Identities = 24/73 (33%), Positives = 41/73 (56%), Gaps = 2/73 (3%)

Query  299  AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVD-IVVGTPGRLDDLVSTG  357
            A +TL  IK    +  + K+ +L     +  +DQ+++LE  V  I +GTPGR+  L+   
Sbjct  163  AHRTLELIKLINAFKADTKVMKLFA-KHIKIKDQINLLEKNVTHIGIGTPGRIKALIDQD  221

Query  358  KLNLSQVRFLVLD  370
             L+L  +++LV D
Sbjct  222  GLSLESMKYLVFD  234


>sp|A4RHU9|DCL2_PYRO7 Dicer-like protein 2 OS=Pyricularia oryzae 
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=DCL2 
PE=3 SV=3
Length=1485

 Score = 39.7 bits (91),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 33/139 (24%), Positives = 59/139 (42%), Gaps = 23/139 (17%)

Query  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQA-IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQ  539
            +PEM S  +++L     +R ++ ++     I+F + +     L Q        PD    +
Sbjct  408  APEMTSIKLQVL-----LRILRGYEGSPVGIVFVKERATAGILSQLL---AIIPDINA-R  458

Query  540  FSCVCLHGDRKPHERKQN-------------LERFKKGDVRFLICTDVAARGIDIHGVPY  586
            +   C+ G  +   RK N             LE+F+ G +  L+ T V   GID+     
Sbjct  459  YKVGCMVGTSRYMSRKMNIHEVLQQGDDLLALEKFRSGAINLLVATSVLEEGIDVPVCNL  518

Query  587  VINVTLPDEKQNYVHRIGR  605
            VI   +P   ++++ R GR
Sbjct  519  VICFDMPANLKSFIQRRGR  537


>sp|A7TSV4|MPH1_VANPO ATP-dependent DNA helicase MPH1 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=MPH1 PE=3 SV=1
Length=1012

 Score = 39.7 bits (91),  Expect = 0.13, Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 29/56 (52%), Gaps = 0/56 (0%)

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
            ++K+ + +FK GD   L+CT +   G+DI  V  +I           + R+GR GR
Sbjct  555  QQKEVISKFKNGDYNVLVCTSIGEEGLDIGEVDMIICFDTTGSPIKNIQRMGRTGR  610


>sp|Q96UB6|SSH4_NEUCR Protein ssh4 OS=Neurospora crassa (strain 
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) 
OX=367110 GN=ssh4 PE=3 SV=2
Length=503

 Score = 39.3 bits (90),  Expect = 0.14, Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 58/130 (45%), Gaps = 21/130 (16%)

Query  133  HYYEVSCHDQG---LCRVGWSTMQASLDL--GTDKFGFGFGGTGKKSHNKQFD--NYGEE  185
            +Y+E   +D+    L  +G +T    L    G  K+   +   G + +N+ F+  +YG +
Sbjct  158  YYWEAKIYDKPENTLISIGMATKPYPLFRLPGFHKYSVAYLSNGTRRYNQPFNATSYGPQ  217

Query  186  FTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPA------CVLKNAELK  239
                D IG       G + F++NGK L    ++   +K+Q  FP+      C+     + 
Sbjct  218  VVQGDVIGVGYRPRSGTIFFTRNGKKLE---DVVHGLKSQNFFPSIGANGPCI-----VH  269

Query  240  FNFGEEEFKF  249
             NFG+  F F
Sbjct  270  VNFGQAGFVF  279


>sp|Q8BGE5|FANCM_MOUSE Fanconi anemia group M protein homolog 
OS=Mus musculus OX=10090 GN=Fancm PE=1 SV=3
Length=2021

 Score = 39.7 bits (91),  Expect = 0.15, Method: Compositional matrix adjust.
 Identities = 25/87 (29%), Positives = 41/87 (47%), Gaps = 1/87 (1%)

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM  612
            E+ Q + +F+ G    L+ T V   G+DI  V  +I           + R+GR GR +R 
Sbjct  509  EQLQVVRQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDAQKSPIRLIQRMGRTGR-KRQ  567

Query  613  GLAISLVATEKEKVWYHVCSSRGKGCY  639
            G  + ++A  +E+  Y+   S  K  Y
Sbjct  568  GRIVVILAEGREERTYNQSQSNKKNIY  594


>sp|Q3MHZ2|SPSB3_BOVIN SPRY domain-containing SOCS box protein 
3 OS=Bos taurus OX=9913 GN=SPSB3 PE=2 SV=1
Length=345

 Score = 38.5 bits (88),  Expect = 0.18, Method: Compositional matrix adjust.
 Identities = 33/119 (28%), Positives = 50/119 (42%), Gaps = 15/119 (13%)

Query  123  RATKGLMKGKHYYEVSCHDQGL---CRVGWSTMQASLD---------LGTDKFGFGFGGT  170
            R TK L +G+H++E+            VG  T    LD         LG D+  +G   T
Sbjct  138  RGTKELGEGQHFWEIKMTSPVYGTDMMVGIGTSDVDLDKYHHTFCSLLGRDEDSWGLSYT  197

Query  171  GKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFP  229
            G   H     ++   F     IG +LD   G + F KN K +G+A      ++N+  +P
Sbjct  198  GLLHHKGDKTSFSSRFGQGSIIGVHLDTWHGTLTFFKNRKCIGVAAT---QLQNKRFYP  253


>sp|O93530|WRN_XENLA Bifunctional 3'-5' exonuclease/ATP-dependent 
helicase WRN OS=Xenopus laevis OX=8355 GN=wrn PE=1 SV=1
Length=1436

 Score = 39.3 bits (90),  Expect = 0.18, Method: Compositional matrix adjust.
 Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
             I++C T+   + +    I+ G          +C   H      +R++   RF + ++  
Sbjct  710  TIVYCPTRKTSEQVTAELIKLG---------IACGTYHAGMGIKQRREVHHRFMRDEIHC  760

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
            ++ T     GI+   +  VI+   P E ++Y   IGR GR
Sbjct  761  VVATVAFGMGINKPDIRKVIHYGAPKEMESYYQEIGRAGR  800


>sp|Q5FVR6|CMS1_RAT Protein CMSS1 OS=Rattus norvegicus OX=10116 
GN=Cmss1 PE=1 SV=1
Length=276

 Score = 38.1 bits (87),  Expect = 0.20, Method: Compositional matrix adjust.
 Identities = 23/73 (32%), Positives = 41/73 (56%), Gaps = 2/73 (3%)

Query  299  AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN-GVDIVVGTPGRLDDLVSTG  357
            A + L  I+    +  + K+ +L     +  ++Q+ +LE   + + VGTPGR+ +LV   
Sbjct  162  AVRALELIRSLTAFKGDAKVMKLFA-KHIKVQEQVKLLEKRAIHLGVGTPGRIKELVKQD  220

Query  358  KLNLSQVRFLVLD  370
             LNL+ ++FLV D
Sbjct  221  GLNLNPLKFLVFD  233


>sp|Q7XD96|DCL3B_ORYSJ Endoribonuclease Dicer homolog 3b OS=Oryza 
sativa subsp. japonica OX=39947 GN=DCL3B PE=3 SV=2
Length=1637

 Score = 38.9 bits (89),  Expect = 0.21, Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 27/58 (47%), Gaps = 0/58 (0%)

Query  551  PHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
            P  ++  L+ F+ G V  L  TDV   G+D+     VI   LP    +YV   GR  R
Sbjct  456  PAVQRFTLDLFRAGKVNLLFTTDVTEEGVDVPNCSCVIRFDLPRTVCSYVQSRGRARR  513


>sp|F1LMY4|RYR1_RAT Ryanodine receptor 1 OS=Rattus norvegicus 
OX=10116 GN=Ryr1 PE=1 SV=1
Length=5035

 Score = 38.9 bits (89),  Expect = 0.21, Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 45/94 (48%), Gaps = 5/94 (5%)

Query  123   RATK--GLMKGKHYYEVSCHDQGLCRVGWST--MQASLDLGTDKFGFGFGGTGKKSHNKQ  178
             RA K   +  G+ Y+E      G   +GW+   ++  ++LG D   + F G   +  +  
Sbjct  1077  RAEKSYAVQSGRWYFEFEAVTTGR-ELGWARPELRPDVELGADDLAYVFNGHRGQRWHLG  1135

Query  179   FDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDL  212
              + +G  +   D +GC +D+ +  + F+ NG+ L
Sbjct  1136  SEPFGRPWQSGDVVGCMIDLTENTIIFTLNGEVL  1169


 Score = 35.0 bits (79),  Expect = 3.6, Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 23/40 (58%), Gaps = 3/40 (8%)

Query  191   TIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPA  230
              IGC +D+  G + F+ NGK+    F++ P   N  LFPA
Sbjct  1515  VIGCLVDLATGLMTFTANGKESNTFFQVEP---NTKLFPA  1551


>sp|A0A1D5PRR9|FANCM_CHICK Fanconi anemia group M protein OS=Gallus 
gallus OX=9031 GN=FANCM PE=1 SV=1
Length=2041

 Score = 38.9 bits (89),  Expect = 0.22, Method: Compositional matrix adjust.
 Identities = 24/81 (30%), Positives = 41/81 (51%), Gaps = 1/81 (1%)

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM  612
            E+ + ++RF++G    L+ T V   G+DI  V  +I           V R+GR GR +R 
Sbjct  523  EQLEVVKRFREGGYNTLVSTCVGEEGLDIGEVDLIICFDAQKSPIRLVQRMGRTGR-QRQ  581

Query  613  GLAISLVATEKEKVWYHVCSS  633
            G  + ++A  +E+  Y+   S
Sbjct  582  GRVVVILAEGREERTYNQSQS  602


>sp|B4KNC5|FBSP1_DROMO F-box/SPRY domain-containing protein 1 
OS=Drosophila mojavensis OX=7230 GN=Fsn PE=3 SV=1
Length=252

 Score = 38.1 bits (87),  Expect = 0.22, Method: Compositional matrix adjust.
 Identities = 49/184 (27%), Positives = 74/184 (40%), Gaps = 25/184 (14%)

Query  79   TTIKTGA-SVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKE-WHGCRATKGLMKGKHYYE  136
            TT KT   + L+ W  NP D      I  +G       V +     RA  G  +G+H +E
Sbjct  67   TTYKTKLRAYLHAW--NPNDCSRNVYIKPNGFTLHRNPVAQSTDAARAKIGFRQGRHAWE  124

Query  137  VSCHDQ--GLCRVGWSTMQASLD-------LGTDKFGFGFG-------GTGKKSHNKQFD  180
            V        +  +G ST +A+L        LG+D   +G+          G    N    
Sbjct  125  VIWEGPLGTVAVIGISTKEAALQCHGYVALLGSDDQSWGWNLVENHLLHNGDMQGNYPLL  184

Query  181  NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFP--ACVLKNAEL  238
            N   ++ + + I   LD D   + F KN + LG+AF   P  K   L+P  + V  N E+
Sbjct  185  NNAPKYQVGERIRVILDCDDNTLSFEKNYEFLGVAFRGLPAKK---LYPTVSAVYGNTEV  241

Query  239  KFNF  242
               +
Sbjct  242  SMVY  245


>sp|P53076|VID30_YEAST Vacuolar import and degradation protein 
30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 
OX=559292 GN=VID30 PE=1 SV=1
Length=958

 Score = 38.9 bits (89),  Expect = 0.22, Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 43/90 (48%), Gaps = 7/90 (8%)

Query  163  FGF-GFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPH  221
            FG+ GF G    S  +Q   Y + F   D IGC ++   G + F+KNG  LG AF     
Sbjct  510  FGYCGFDGLITNS-TEQSKEYAKPFGRDDVIGCGINFIDGSIFFTKNGIHLGNAF---TD  565

Query  222  MKNQALFPACVLK-NAELKFNFG-EEEFKF  249
            + +    P   L+    +K NFG  E+F F
Sbjct  566  LNDLEFVPYVALRPGNSIKTNFGLNEDFVF  595


>sp|P50729|RECS_BACSU Probable ATP-dependent DNA helicase RecS 
OS=Bacillus subtilis (strain 168) OX=224308 GN=recS PE=3 SV=1
Length=496

 Score = 38.5 bits (88),  Expect = 0.23, Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 0/75 (0%)

Query  546  HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR  605
            HG  +  +R    ++F    +  + CT+    G+D   + YVI+  LP   + ++  IGR
Sbjct  260  HGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGR  319

Query  606  VGRAERMGLAISLVA  620
             GR  +  ++I L A
Sbjct  320  AGRDGKPSVSILLRA  334


>sp|A6ZVS0|MPH1_YEAS7 ATP-dependent DNA helicase MPH1 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=MPH1 PE=3 SV=1
Length=993

 Score = 38.9 bits (89),  Expect = 0.23, Method: Compositional matrix adjust.
 Identities = 21/68 (31%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
            +K+ +  FKKG+   L+CT +   G+DI  V  +I           + R+GR GR +R G
Sbjct  556  QKEVIHNFKKGEYNVLVCTSIGEEGLDIGEVDLIICYDTTSSPIKNIQRMGRTGR-KRDG  614

Query  614  LAISLVAT  621
              + L ++
Sbjct  615  KIVLLFSS  622


>sp|Q57742|HELX_METJA Uncharacterized ATP-dependent helicase MJ0294 
OS=Methanocaldococcus jannaschii (strain ATCC 43067 / 
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ0294 
PE=3 SV=1
Length=841

 Score = 38.5 bits (88),  Expect = 0.23, Method: Compositional matrix adjust.
 Identities = 30/109 (28%), Positives = 50/109 (46%), Gaps = 10/109 (9%)

Query  499  RAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNL  558
            + I+EHK    +IF  T+   + +  ++++Q G    + H  S    H       R +  
Sbjct  273  KLIEEHK--TTLIFTNTRSATERV-AFYLKQLGVEKVETHHSSLSREH-------RLEVE  322

Query  559  ERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVG  607
            E+ KKG++R  I +     G+DI  +  VI +  P      + RIGR G
Sbjct  323  EKLKKGEIRVCISSTSLELGVDIGSIDLVILLGSPKSVSRALQRIGRSG  371


>sp|P40562|MPH1_YEAST ATP-dependent DNA helicase MPH1 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MPH1 
PE=1 SV=1
Length=993

 Score = 38.5 bits (88),  Expect = 0.24, Method: Compositional matrix adjust.
 Identities = 21/68 (31%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
            +K+ +  FKKG+   L+CT +   G+DI  V  +I           + R+GR GR +R G
Sbjct  556  QKEVIHNFKKGEYNVLVCTSIGEEGLDIGEVDLIICYDTTSSPIKNIQRMGRTGR-KRDG  614

Query  614  LAISLVAT  621
              + L ++
Sbjct  615  KIVLLFSS  622


>sp|Q6PJ21|SPSB3_HUMAN SPRY domain-containing SOCS box protein 
3 OS=Homo sapiens OX=9606 GN=SPSB3 PE=1 SV=2
Length=355

 Score = 38.1 bits (87),  Expect = 0.27, Method: Compositional matrix adjust.
 Identities = 33/119 (28%), Positives = 50/119 (42%), Gaps = 15/119 (13%)

Query  123  RATKGLMKGKHYYEVSCHDQGL---CRVGWSTMQASLD---------LGTDKFGFGFGGT  170
            R TK L +G+H++E+            VG  T    LD         LG D+  +G   T
Sbjct  139  RGTKELGEGQHFWEIKMTSPVYGTDMMVGIGTSDVDLDKYRHTFCSLLGRDEDSWGLSYT  198

Query  171  GKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFP  229
            G   H     ++   F     IG +LD   G + F KN K +G+A      ++N+  +P
Sbjct  199  GLLHHKGDKTSFSSRFGQGSIIGVHLDTWHGTLTFFKNRKCIGVAAT---KLQNKRFYP  254


>sp|Q0CEI2|DCL2_ASPTN Dicer-like protein 2 OS=Aspergillus terreus 
(strain NIH 2624 / FGSC A1156) OX=341663 GN=dcl2 PE=3 SV=2
Length=1377

 Score = 38.5 bits (88),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 0/57 (0%)

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAE  610
            ++  L  F+ G    ++ TDV   GIDI     VI    P   +++V R GR  R E
Sbjct  439  QRDTLSEFRSGQKNLIVATDVLEEGIDISACSVVICYDKPANVKSFVQRRGRARRKE  495


>sp|Q571F5|SPSB3_MOUSE SPRY domain-containing SOCS box protein 
3 OS=Mus musculus OX=10090 GN=Spsb3 PE=2 SV=2
Length=354

 Score = 38.1 bits (87),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 33/119 (28%), Positives = 49/119 (41%), Gaps = 15/119 (13%)

Query  123  RATKGLMKGKHYYEVSCHDQGL---CRVGWSTMQASLD---------LGTDKFGFGFGGT  170
            R TK L  G+H++E+            VG  T    LD         LG D+  +G   T
Sbjct  139  RGTKELGDGQHFWEIKMTSPVYGTDMMVGIGTSDVDLDKYHHTFCSLLGRDEDSWGLSYT  198

Query  171  GKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFP  229
            G   H     ++   F     IG +LD   G + F KN K +G+A      ++N+  +P
Sbjct  199  GLLHHKGDKTSFSSRFGQGSIIGVHLDTWHGTLTFFKNRKCIGVA---ATRLQNRRFYP  254


>sp|Q0UL22|DCL2_PHANO Dicer-like protein 2 OS=Phaeosphaeria nodorum 
(strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=DCL2 
PE=3 SV=2
Length=1399

 Score = 38.5 bits (88),  Expect = 0.30, Method: Compositional matrix adjust.
 Identities = 17/61 (28%), Positives = 30/61 (49%), Gaps = 0/61 (0%)

Query  550  KPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA  609
            +P  ++  LE F+ G +  ++ T V   GID+     V+    P   +++V R GR  + 
Sbjct  434  EPRNQQATLENFRAGKLNLILATSVLEEGIDVSSCHLVVCFESPKNLKSFVQRRGRARKE  493

Query  610  E  610
            E
Sbjct  494  E  494


>sp|Q0U6G5|AMPP3_PHANO Probable Xaa-Pro aminopeptidase PEPP OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=PEPP PE=3 SV=1
Length=463

 Score = 38.1 bits (87),  Expect = 0.30, Method: Compositional matrix adjust.
 Identities = 27/80 (34%), Positives = 42/80 (53%), Gaps = 6/80 (8%)

Query  283  LPNAPKALIVEPS----RELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            LP A   + VEP     R + E  L + +Q K+YID   L +   +GGV   D + V E+
Sbjct  384  LP-ARSVITVEPGIYFCRFIIEPYLKDDQQ-KQYIDEKVLEKYWSVGGVRIEDNILVTED  441

Query  339  GVDIVVGTPGRLDDLVSTGK  358
            G++ +  TP  +D++ S  K
Sbjct  442  GIENLTPTPKEIDEITSLVK  461


>sp|A2QX45|DCL22_ASPNC Dicer-like protein 2-2 OS=Aspergillus niger 
(strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 
GN=dcl2-2 PE=3 SV=2
Length=1362

 Score = 38.1 bits (87),  Expect = 0.34, Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 29/55 (53%), Gaps = 0/55 (0%)

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
            + + LE+F++G +  +I TD    GID+     V+N       ++++ R GR  R
Sbjct  411  QTETLEKFRQGSLNLIITTDALEEGIDVPACNTVLNFNCQLSLKSFIQRRGRARR  465


>sp|Q2T9Y1|CC026_BOVIN Uncharacterized protein C3orf26 homolog 
OS=Bos taurus OX=9913 PE=2 SV=1
Length=279

 Score = 37.4 bits (85),  Expect = 0.36, Method: Compositional matrix adjust.
 Identities = 17/45 (38%), Positives = 31/45 (69%), Gaps = 1/45 (2%)

Query  327  VAARDQLSVLENGV-DIVVGTPGRLDDLVSTGKLNLSQVRFLVLD  370
            +  ++Q+ +LE  V  + VGTPGR+ +L+  G L+L+ ++FL+ D
Sbjct  192  IKVQEQVKLLEKRVVHLGVGTPGRIKELIKQGGLHLNPLKFLIFD  236


>sp|Q581T1|REH2_TRYB2 RNA editing associated helicase 2 OS=Trypanosoma 
brucei brucei (strain 927/4 GUTat10.1) OX=185431 GN=REH2 
PE=1 SV=1
Length=2167

 Score = 38.1 bits (87),  Expect = 0.45, Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 44/87 (51%), Gaps = 4/87 (5%)

Query  535   KKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD  594
             ++  +F  +CLH      E+ +      +G ++ ++ T++A  G+ I  V  VI+V    
Sbjct  1618  ERNAKFHIICLHSSVGAEEQMRCFLPAPEGKIKLILSTNIAESGVTIDDVAAVIDVGRGK  1677

Query  595   EKQNYVHRIG--RVGRAERMGLAISLV  619
             EK +YV R G   VGR E MG    LV
Sbjct  1678  EK-SYVMRKGTTSVGRNE-MGSMSQLV  1702


>sp|P30015|LHR_ECOLI Probable ATP-dependent helicase Lhr OS=Escherichia 
coli (strain K12) OX=83333 GN=lhr PE=3 SV=2
Length=1538

 Score = 37.7 bits (86),  Expect = 0.48, Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 29/62 (47%), Gaps = 0/62 (0%)

Query  546  HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR  605
            HG     +R    +  K G++R ++ T     GID+  V  VI V  P    + + RIGR
Sbjct  356  HGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGR  415

Query  606  VG  607
             G
Sbjct  416  AG  417


>sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 
OS=Homo sapiens OX=9606 GN=HERC1 PE=1 SV=2
Length=4861

 Score = 37.7 bits (86),  Expect = 0.52, Method: Compositional matrix adjust.
 Identities = 26/87 (30%), Positives = 40/87 (46%), Gaps = 7/87 (8%)

Query  170   TGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFP  229
             +G   HN +       FT  D I C LD++   + F KNG++  LAFE    +    L+P
Sbjct  2115  SGNLYHNGEQTLTLSSFTQGDFITCVLDMEARTISFGKNGEEPKLAFE---DVDAAELYP  2171

Query  230   ACVL---KNAELKFNFGEEEFKFPPKD  253
              CV+    N   K    + + +  P+D
Sbjct  2172  -CVMFYSSNPGEKVKICDMQMRGTPRD  2197


>sp|P43809|RECG_HAEIN ATP-dependent DNA helicase RecG OS=Haemophilus 
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) 
OX=71421 GN=recG PE=3 SV=1
Length=693

 Score = 37.4 bits (85),  Expect = 0.53, Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 34/66 (52%), Gaps = 1/66 (2%)

Query  544  CLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI  603
             +HG  KP E++  + RFK  ++  L+ T V   G+D+     +I         + +H++
Sbjct  522  LVHGRMKPQEKQDVMMRFKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQL  581

Query  604  -GRVGR  608
             GRVGR
Sbjct  582  RGRVGR  587


>sp|Q9FT74|RQL1_ARATH ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis 
thaliana OX=3702 GN=RECQL1 PE=2 SV=1
Length=606

 Score = 37.4 bits (85),  Expect = 0.54, Method: Compositional matrix adjust.
 Identities = 36/146 (25%), Positives = 64/146 (44%), Gaps = 12/146 (8%)

Query  501  IKEHKMDQA-IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLE  559
            +++   DQ+ I++C +K +C ++ ++  ++         +   V  H      +R     
Sbjct  421  LRDRFKDQSGIVYCLSKSECVDVAKFLNEKC--------KVKTVYYHAGVPAKQRVDVQR  472

Query  560  RFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +++ G+VR +  T     GID   V +VI+ TL    ++Y    GR GR       I L 
Sbjct  473  KWQTGEVRIVCATIAFGMGIDKADVRFVIHNTLSKAVESYYQESGRAGRDGLQAQCICLY  532

Query  620  ATEKEKVWYHVCSSR-GKGCYNTRLK  644
              +K+     VC  R G+G    R K
Sbjct  533  --QKKDFSRVVCMLRNGQGRNMDRFK  556


>sp|Q6TV19|DICER_DANRE Endoribonuclease Dicer OS=Danio rerio OX=7955 
GN=dicer1 PE=2 SV=2
Length=1865

 Score = 37.7 bits (86),  Expect = 0.56, Method: Compositional matrix adjust.
 Identities = 25/76 (33%), Positives = 37/76 (49%), Gaps = 4/76 (5%)

Query  554  RKQN--LERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
            RKQ   L +F+  +   LI T +   G+DI     V+   LP E ++YV   GR  RA  
Sbjct  485  RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR-ARAP-  542

Query  612  MGLAISLVATEKEKVW  627
            +   I L  +E+ K +
Sbjct  543  VSNYIMLADSERTKTF  558


>sp|Q8R418|DICER_MOUSE Endoribonuclease Dicer OS=Mus musculus 
OX=10090 GN=Dicer1 PE=1 SV=3
Length=1916

 Score = 37.4 bits (85),  Expect = 0.59, Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (4%)

Query  554  RKQN--LERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRV  606
            RKQ   L +F+  +   LI T V   G+DI     V+   LP E ++YV   GR 
Sbjct  499  RKQEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA  553


>sp|Q914K8|Y022_SIFVH Putative helicase 22 OS=Sulfolobus islandicus 
filamentous virus (isolate Iceland/Hveragerdi) OX=654908 
GN=SIFV0022 PE=4 SV=1
Length=559

 Score = 37.4 bits (85),  Expect = 0.59, Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 32/62 (52%), Gaps = 0/62 (0%)

Query  550  KPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA  609
            K  ER + +E  K   ++ LI T +A  G+DI  +  V+ +T    +   + RIGRV R 
Sbjct  458  KLEERMEKIEALKNEKLQVLISTSLADEGLDIPNLRLVVLLTQGKSRIKLIQRIGRVMRV  517

Query  610  ER  611
             +
Sbjct  518  SQ  519


>sp|P34529|DCR1_CAEEL Endoribonuclease dcr-1 OS=Caenorhabditis 
elegans OX=6239 GN=dcr-1 PE=1 SV=3
Length=1910

 Score = 37.4 bits (85),  Expect = 0.63, Method: Compositional matrix adjust.
 Identities = 20/59 (34%), Positives = 31/59 (53%), Gaps = 1/59 (2%)

Query  552  HERK-QNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA  609
            H+R+ + L RF + ++  LI T V   G+D+     VI    P + ++YV   GR  RA
Sbjct  439  HKRQTEVLRRFHRNEINCLIATSVLEEGVDVKQCNLVIKFDRPLDMRSYVQSKGRARRA  497


>sp|A0MQH0|DICER_CRIGR Endoribonuclease Dicer OS=Cricetulus griseus 
OX=10029 GN=DICER1 PE=2 SV=3
Length=1917

 Score = 37.4 bits (85),  Expect = 0.64, Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (4%)

Query  554  RKQN--LERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRV  606
            RKQ   L +F+  +   LI T V   G+DI     V+   LP E ++YV   GR 
Sbjct  499  RKQEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA  553


>sp|Q14191|WRN_HUMAN Bifunctional 3'-5' exonuclease/ATP-dependent 
helicase WRN OS=Homo sapiens OX=9606 GN=WRN PE=1 SV=2
Length=1432

 Score = 37.4 bits (85),  Expect = 0.72, Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
             II+C ++           QQ  G  +K +  SC   H       RK    RF + +++ 
Sbjct  767  TIIYCPSR--------KMTQQVTGELRKLN-LSCGTYHAGMSFSTRKDIHHRFVRDEIQC  817

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
            +I T     GI+   +  VI+   P + ++Y   IGR GR
Sbjct  818  VIATIAFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGR  857


>sp|A1CS00|MPH1_ASPCL ATP-dependent DNA helicase mph1 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=mph1 PE=3 SV=1
Length=1119

 Score = 37.0 bits (84),  Expect = 0.73, Method: Compositional matrix adjust.
 Identities = 21/71 (30%), Positives = 36/71 (51%), Gaps = 1/71 (1%)

Query  558  LERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAIS  617
            +++FKKGD   ++ T +   G+DI  V  ++           + R+GR GR +R G  + 
Sbjct  730  VQKFKKGDYNTIVATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGR-KRAGNIVL  788

Query  618  LVATEKEKVWY  628
            L+   KE+  Y
Sbjct  789  LLMQGKEEESY  799


>sp|P71359|RECQ_HAEIN ATP-dependent DNA helicase RecQ OS=Haemophilus 
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) 
OX=71421 GN=recQ PE=3 SV=1
Length=619

 Score = 37.0 bits (84),  Expect = 0.76, Method: Compositional matrix adjust.
 Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 9/114 (8%)

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
            E   R +   K    II+C ++   + + +    +G          S    H   +   R
Sbjct  228  EQLTRFVLAQKGKSGIIYCNSRNKVERIAESLRNKG---------VSAAAYHAGMETAIR  278

Query  555  KQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
            ++  + F++ +V+ ++ T     GI+   V +V +  LP   ++Y    GR GR
Sbjct  279  ERVQQDFQRDNVQVVVATIAFGMGINKSNVRFVAHFDLPRSIESYYQETGRAGR  332


>sp|Q39YM4|MURE_GEOMG UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate 
ligase OS=Geobacter metallireducens (strain 
ATCC 53774 / DSM 7210 / GS-15) OX=269799 GN=murE PE=3 
SV=1
Length=511

 Score = 37.0 bits (84),  Expect = 0.76, Method: Compositional matrix adjust.
 Identities = 18/55 (33%), Positives = 29/55 (53%), Gaps = 0/55 (0%)

Query  93   MNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRV  147
            +NP + G + A+  +GL C SR+V+      A +G+    H Y V+  D+G   V
Sbjct  10   INPSEAGGSLALEIEGLYCDSRQVRSGGLFFALRGVATDGHDYIVASRDRGAVAV  64


>sp|P46063|RECQ1_HUMAN ATP-dependent DNA helicase Q1 OS=Homo sapiens 
OX=9606 GN=RECQL PE=1 SV=3
Length=649

 Score = 37.0 bits (84),  Expect = 0.76, Method: Compositional matrix adjust.
 Identities = 27/134 (20%), Positives = 56/134 (42%), Gaps = 25/134 (19%)

Query  479  ANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD----NLEQYFIQQGGGPD  534
            +N+ +   + +K++ G Y        K    II+C ++ D +    +L+   I  G    
Sbjct  295  SNTEDFIEDIVKLINGRY--------KGQSGIIYCFSQKDSEQVTVSLQNLGIHAGA---  343

Query  535  KKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD  594
                       H + +P ++     ++   +++ ++ T     GID   V +VI+ ++  
Sbjct  344  ----------YHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSK  393

Query  595  EKQNYVHRIGRVGR  608
              +NY    GR GR
Sbjct  394  SMENYYQESGRAGR  407


>sp|Q25BN1|DICER_CHICK Endoribonuclease Dicer OS=Gallus gallus 
OX=9031 GN=DICER1 PE=2 SV=3
Length=1921

 Score = 37.0 bits (84),  Expect = 0.80, Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 37/76 (49%), Gaps = 4/76 (5%)

Query  554  RKQN--LERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
            RKQ   L +F+  +   LI T +   G+DI     V+   LP E ++YV   GR  RA  
Sbjct  499  RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR-ARAP-  556

Query  612  MGLAISLVATEKEKVW  627
            +   I L  T+K K +
Sbjct  557  ISNYIMLADTDKIKSF  572


>sp|P24230|RECG_ECOLI ATP-dependent DNA helicase RecG OS=Escherichia 
coli (strain K12) OX=83333 GN=recG PE=1 SV=1
Length=693

 Score = 37.0 bits (84),  Expect = 0.82, Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 36/71 (51%), Gaps = 1/71 (1%)

Query  539  QFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQN  598
            + +   +HG  KP E++  +  FK+G++  L+ T V   G+D+     +I          
Sbjct  517  ELNVGLVHGRMKPAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLA  576

Query  599  YVHRI-GRVGR  608
             +H++ GRVGR
Sbjct  577  QLHQLRGRVGR  587


>sp|Q8XD86|RECG_ECO57 ATP-dependent DNA helicase RecG OS=Escherichia 
coli O157:H7 OX=83334 GN=recG PE=3 SV=1
Length=693

 Score = 37.0 bits (84),  Expect = 0.82, Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 34/66 (52%), Gaps = 1/66 (2%)

Query  544  CLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI  603
             +HG  KP E++  +  FK+G++  L+ T V   G+D+     +I           +H++
Sbjct  522  LVHGRMKPAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQL  581

Query  604  -GRVGR  608
             GRVGR
Sbjct  582  RGRVGR  587


>sp|B7UM74|RECG_ECO27 ATP-dependent DNA helicase RecG OS=Escherichia 
coli O127:H6 (strain E2348/69 / EPEC) OX=574521 GN=recG 
PE=3 SV=1
Length=693

 Score = 36.6 bits (83),  Expect = 0.88, Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 34/66 (52%), Gaps = 1/66 (2%)

Query  544  CLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI  603
             +HG  KP E++  +  FK+G++  L+ T V   G+D+     +I           +H++
Sbjct  522  LVHGRMKPAEKQAVMTSFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQL  581

Query  604  -GRVGR  608
             GRVGR
Sbjct  582  RGRVGR  587


>sp|A1D9Z6|DCL2_NEOFI Dicer-like protein 2 OS=Neosartorya fischeri 
(strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 
/ JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dcl2 PE=3 SV=1
Length=1388

 Score = 37.0 bits (84),  Expect = 0.89, Method: Compositional matrix adjust.
 Identities = 18/57 (32%), Positives = 28/57 (49%), Gaps = 0/57 (0%)

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAE  610
            ++  L+ F+ G    +I TDV   GIDI     V+    P   +++V R GR  R +
Sbjct  440  QRDTLDDFRSGRKNLIIATDVLEEGIDISACSVVVCYDKPPNLKSFVQRRGRARRKQ  496


>sp|B3DLA6|DICER_XENTR Endoribonuclease Dicer OS=Xenopus tropicalis 
OX=8364 GN=dicer1 PE=2 SV=2
Length=1893

 Score = 37.0 bits (84),  Expect = 0.91, Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (4%)

Query  554  RKQN--LERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR  605
            RKQ   L +F+  +   LI T +   G+DI     V+   LP E ++YV   GR
Sbjct  490  RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPSEYRSYVQSKGR  543


>sp|Q9UPY3|DICER_HUMAN Endoribonuclease Dicer OS=Homo sapiens 
OX=9606 GN=DICER1 PE=1 SV=3
Length=1922

 Score = 37.0 bits (84),  Expect = 0.93, Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 37/76 (49%), Gaps = 4/76 (5%)

Query  554  RKQN--LERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
            RKQ   L +F+  +   LI T +   G+DI     V+   LP E ++YV   GR  RA  
Sbjct  499  RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR-ARAP-  556

Query  612  MGLAISLVATEKEKVW  627
            +   I L  T+K K +
Sbjct  557  ISNYIMLADTDKIKSF  572


>sp|Q6TUI4|DICER_BOVIN Endoribonuclease Dicer OS=Bos taurus OX=9913 
GN=DICER1 PE=2 SV=3
Length=1923

 Score = 37.0 bits (84),  Expect = 0.98, Method: Compositional matrix adjust.
 Identities = 19/55 (35%), Positives = 27/55 (49%), Gaps = 2/55 (4%)

Query  554  RKQN--LERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRV  606
            RKQ   L +F+  +   LI T +   G+DI     V+   LP E ++YV   GR 
Sbjct  499  RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA  553


>sp|A4RN08|MPH1_PYRO7 ATP-dependent DNA helicase MPH1 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=MPH1 PE=3 SV=1
Length=1102

 Score = 36.6 bits (83),  Expect = 1.0, Method: Compositional matrix adjust.
 Identities = 37/139 (27%), Positives = 54/139 (39%), Gaps = 30/139 (22%)

Query  519  CDNLEQYFIQQGGGPDKKGHQFS-----------CVCLH------------GDRKPHE--  553
            CDNL  YF+  G G   +   FS            + +H             D K  E  
Sbjct  488  CDNLLNYFMDAGEGSSTRVIVFSEYRDSAEEITRVLNVHKPMISASLFVGQADSKKSEGM  547

Query  554  -RKQNLE---RFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA  609
             +KQ +E   +F+ G    L+ T +   G+DI  V  +I           + R+GR GR 
Sbjct  548  KQKQQIETIAKFRDGIFNVLVATSIGEEGLDIGQVDLIICYDASSSPIRMLQRMGRTGR-  606

Query  610  ERMGLAISLVATEKEKVWY  628
            +R G    L+   KE+  Y
Sbjct  607  KRAGKITLLLMKGKEEDNY  625


>sp|B2WMQ2|AMPP3_PYRTR Probable Xaa-Pro aminopeptidase pepP OS=Pyrenophora 
tritici-repentis (strain Pt-1C-BFP) OX=426418 GN=pepP 
PE=3 SV=1
Length=463

 Score = 36.6 bits (83),  Expect = 1.0, Method: Compositional matrix adjust.
 Identities = 21/53 (40%), Positives = 29/53 (55%), Gaps = 3/53 (6%)

Query  310  KKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLS  362
            KKYID   L +   +GGV   D + V +NG + +  TP  +DD+    KL LS
Sbjct  413  KKYIDESVLEKYWSVGGVRIEDNVLVTKNGFENLTPTPKEIDDIT---KLILS  462


>sp|Q6FPQ3|MPH1_CANGA ATP-dependent DNA helicase MPH1 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=MPH1 PE=3 SV=1
Length=1052

 Score = 36.6 bits (83),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 19/73 (26%), Positives = 34/73 (47%), Gaps = 0/73 (0%)

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM  612
            ++K+ +++FK G    L+CT +   G+DI  V  +I           + R+GR GR    
Sbjct  550  QQKEVIKKFKSGLYNVLVCTSIGEEGLDIGEVDLIICYDTTSSPIKNIQRMGRTGRKRDG  609

Query  613  GLAISLVATEKEK  625
             + +   + E  K
Sbjct  610  RIVLMFSSNEASK  622


>sp|Q5A1A0|MPH1_CANAL ATP-dependent DNA helicase MPH1 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=MPH1 
PE=3 SV=2
Length=1187

 Score = 36.6 bits (83),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 21/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
            +K+ +++FKKG    L+ T +   G+DI  V  +I           + R+GR GR +R G
Sbjct  581  QKEIIKKFKKGVFNILVATSIGEEGLDIGEVDLIICYDSTSSPIKNIQRMGRTGR-KRDG  639

Query  614  LAISLVATEKE  624
              + L ++ +E
Sbjct  640  KVLMLFSSNEE  650


>sp|A2R345|DCL21_ASPNC Dicer-like protein 2-1 OS=Aspergillus niger 
(strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 
GN=dcl2-1 PE=3 SV=2
Length=1387

 Score = 36.6 bits (83),  Expect = 1.2, Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 34/71 (48%), Gaps = 2/71 (3%)

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
            ++  L  F+ G    +I TDV   GIDI     V+    P   +++V R GR  R  +  
Sbjct  441  QRDTLSEFRTGQKNLIIATDVLEEGIDISACSVVVCFDKPPNLKSFVQRRGR-ARHRQST  499

Query  614  LAISLVATEKE  624
             AI + AT+ E
Sbjct  500  YAI-MFATDDE  509


>sp|E3S6N7|AMPP3_PYRTT Probable Xaa-Pro aminopeptidase pepP OS=Pyrenophora 
teres f. teres (strain 0-1) OX=861557 GN=pepP PE=3 
SV=1
Length=463

 Score = 36.2 bits (82),  Expect = 1.2, Method: Compositional matrix adjust.
 Identities = 21/53 (40%), Positives = 28/53 (53%), Gaps = 3/53 (6%)

Query  310  KKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLS  362
            KKYID   L     +GGV   D + V +NG + +  TP  +DD+    KL LS
Sbjct  413  KKYIDESVLERYWSVGGVRIEDNVLVTKNGFENLTPTPKEIDDIT---KLILS  462


>sp|Q6CQX2|MPH1_KLULA ATP-dependent DNA helicase MPH1 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=MPH1 PE=3 SV=2
Length=1002

 Score = 36.6 bits (83),  Expect = 1.2, Method: Compositional matrix adjust.
 Identities = 21/73 (29%), Positives = 33/73 (45%), Gaps = 0/73 (0%)

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM  612
            ++K+ +  FKKG    L+CT +   G+DI  V  +I           + R+GR GR    
Sbjct  569  QQKKVISDFKKGIYNVLVCTSIGEEGLDIGEVDLIICFDSTSSPIKNIQRMGRTGRKRDG  628

Query  613  GLAISLVATEKEK  625
             + +     EK K
Sbjct  629  RIVLLFSGNEKFK  641


>sp|P18160|SPLA_DICDI Dual specificity protein kinase splA OS=Dictyostelium 
discoideum OX=44689 GN=splA PE=1 SV=3
Length=2410

 Score = 36.6 bits (83),  Expect = 1.2, Method: Compositional matrix adjust.
 Identities = 30/108 (28%), Positives = 49/108 (45%), Gaps = 11/108 (10%)

Query  121   GCRATKGLMKGKHYYEVSCH--DQGLCRVGWSTMQAS--LDLGTDKFGFGF-GGTGKKSH  175
             G RAT+   +G  Y+EV     D+G   +G + ++      +G     +G+    G+K  
Sbjct  1074  GVRATQPFGEGFCYFEVIIDQLDKGQLSIGLANLEYPTFYHVGWMPRSYGYHNDDGRKFR  1133

Query  176   NKQ------FDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFE  217
              ++       ++YG  +   D IGC L      + F+KNG  LG AF 
Sbjct  1134  WREEPGVNEGESYGSSYKKGDIIGCGLSFTSREIFFTKNGMYLGTAFS  1181


>sp|Q9CZT6|CMS1_MOUSE Protein CMSS1 OS=Mus musculus OX=10090 GN=Cmss1 
PE=2 SV=1
Length=276

 Score = 35.8 bits (81),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query  322  LIIGGVAARDQLSVLENGV-DIVVGTPGRLDDLVSTGKLNLSQVRFLVLD  370
            L    +  ++Q+ +LE  V  + VGTPGR+ +LV    L+L+ ++FLV D
Sbjct  184  LFAKHIKVQEQVKLLEKRVIHLGVGTPGRIKELVKQDGLHLNPLKFLVFD  233


>sp|Q5RF63|RECQ1_PONAB ATP-dependent DNA helicase Q1 OS=Pongo 
abelii OX=9601 GN=RECQL PE=2 SV=1
Length=649

 Score = 36.2 bits (82),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 27/134 (20%), Positives = 55/134 (41%), Gaps = 25/134 (19%)

Query  479  ANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD----NLEQYFIQQGGGPD  534
            +N+ +   + +K++ G Y        K    II+C ++ D +    +L    I  G    
Sbjct  295  SNTEDFIEDIVKLINGRY--------KGQSGIIYCFSQKDSEQVTVSLRNLGIHAGA---  343

Query  535  KKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD  594
                       H + +P ++     ++   +++ ++ T     GID   V +VI+ ++  
Sbjct  344  ----------YHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSK  393

Query  595  EKQNYVHRIGRVGR  608
              +NY    GR GR
Sbjct  394  SMENYYQESGRAGR  407


>sp|I3XHK1|FANCM_ARATH DEAD-box ATP-dependent RNA helicase FANCM 
OS=Arabidopsis thaliana OX=3702 GN=FANCM PE=2 SV=1
Length=1344

 Score = 36.2 bits (82),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 41/172 (24%), Positives = 65/172 (38%), Gaps = 28/172 (16%)

Query  478  GANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL------------EQY  525
            GA SP++ S+ ++IL   + V   K+ K  + IIF   +    ++               
Sbjct  445  GAPSPKL-SKMLEILVDHFKV---KDPKTSRVIIFSNFRGSVRDIMNALSNIGDMVKATE  500

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
            FI Q  G   KG                ++  LE+F+ G    ++ T +   G+DI  V 
Sbjct  501  FIGQSSGKTLKGQSQKI-----------QQAVLEKFRAGGFNVIVATSIGEEGLDIMEVD  549

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
             VI           + R+GR GR    G  + L     EK  Y    + G+ 
Sbjct  550  LVICFDANVSPLRMIQRMGRTGRKNN-GRVVVLACEGSEKNSYMRKQASGRA  600


>sp|P0CR12|MRH4_CRYNJ ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Cryptococcus neoformans var. neoformans serotype D 
(strain JEC21 / ATCC MYA-565) OX=214684 GN=MRH4 PE=3 SV=1
Length=551

 Score = 36.2 bits (82),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 44/164 (27%), Positives = 69/164 (42%), Gaps = 49/164 (30%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYID-NPKLR----ELLIIGGVAARDQLSVLENGVD  341
            P+++I+ P+ EL  Q+     QF K +  N KL        + GGV  +         VD
Sbjct  139  PRSIILSPTHELTRQS----TQFAKILTHNTKLSVHGMSSTVSGGVGEK------RGSVD  188

Query  342  IVVGTPGRL-------------------------DDLVSTGKLNLSQVRFLVLDEADGLL  376
            +++GT G L                          D    G +   +V ++V+DEAD LL
Sbjct  189  VLLGTVGSLRRMFGMTRSEEEQEKEDYIRGKRIWQDEQEKGMVEGDKVEWVVIDEADVLL  248

Query  377  SQG-YSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLS  419
             +  Y D I+        V S  K+  +I+C+ATL  F +  L+
Sbjct  249  GREFYLDTIS--------VLSQVKQANLILCTATLPPFLINLLT  284


>sp|P0CR13|MRH4_CRYNB ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Cryptococcus neoformans var. neoformans serotype D 
(strain B-3501A) OX=283643 GN=MRH4 PE=3 SV=1
Length=551

 Score = 36.2 bits (82),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 44/164 (27%), Positives = 69/164 (42%), Gaps = 49/164 (30%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYID-NPKLR----ELLIIGGVAARDQLSVLENGVD  341
            P+++I+ P+ EL  Q+     QF K +  N KL        + GGV  +         VD
Sbjct  139  PRSIILSPTHELTRQS----TQFAKILTHNTKLSVHGMSSTVSGGVGEK------RGSVD  188

Query  342  IVVGTPGRL-------------------------DDLVSTGKLNLSQVRFLVLDEADGLL  376
            +++GT G L                          D    G +   +V ++V+DEAD LL
Sbjct  189  VLLGTVGSLRRMFGMTRSEEEQEKEDYIRGKRIWQDEQEKGMVEGDKVEWVVIDEADVLL  248

Query  377  SQG-YSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLS  419
             +  Y D I+        V S  K+  +I+C+ATL  F +  L+
Sbjct  249  GREFYLDTIS--------VLSQVKQANLILCTATLPPFLINLLT  284


>sp|Q09811|HUS2_SCHPO ATP-dependent DNA helicase hus2/rqh1 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 
GN=rqh1 PE=1 SV=1
Length=1328

 Score = 36.2 bits (82),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 12/132 (9%)

Query  480  NSPEMWSEAIKILKGEYA--VRAIKE-HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKK  536
            N P ++ E IK  K  Y    R I   H  +  II+C ++  C        +Q     + 
Sbjct  714  NRPNLFYE-IKPKKDLYTELYRFISNGHLHESGIIYCLSRTSC--------EQVAAKLRN  764

Query  537  GHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEK  596
             +       H   +  ER++    ++ G  + ++ T     G+D   V +VI+ + P   
Sbjct  765  DYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGMGVDKGDVRFVIHHSFPKSL  824

Query  597  QNYVHRIGRVGR  608
            + Y    GR GR
Sbjct  825  EGYYQETGRAGR  836


>sp|Q9CMB4|RECG_PASMU ATP-dependent DNA helicase RecG OS=Pasteurella 
multocida (strain Pm70) OX=272843 GN=recG PE=3 SV=1
Length=693

 Score = 36.2 bits (82),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 19/66 (29%), Positives = 35/66 (53%), Gaps = 1/66 (2%)

Query  544  CLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI  603
             +HG  KP E++  ++ FK+ ++  L+ T V   G+D+     +I         + +H++
Sbjct  522  LVHGRMKPAEKQDIMQAFKQAEIDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQL  581

Query  604  -GRVGR  608
             GRVGR
Sbjct  582  RGRVGR  587


>sp|A4RKC3|DCL1_PYRO7 Dicer-like protein 1 OS=Pyricularia oryzae 
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=DCL1 
PE=3 SV=2
Length=1591

 Score = 36.2 bits (82),  Expect = 1.5, Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 27/53 (51%), Gaps = 0/53 (0%)

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR  605
            +++Q + RF+ G++  L  T +A  G+DI G   VI   L      Y+   GR
Sbjct  509  QQEQTVSRFRDGEINCLFATSIAEEGLDIPGCNVVIRFDLHGTTIQYIQSRGR  561


>sp|A6M229|IOLC_CLOB8 5-dehydro-2-deoxygluconokinase OS=Clostridium 
beijerinckii (strain ATCC 51743 / NCIMB 8052) OX=290402 
GN=iolC PE=3 SV=1
Length=339

 Score = 35.8 bits (81),  Expect = 1.5, Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 17/116 (15%)

Query  154  ASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLD---IDKGHVKFSKNGK  210
            A++ +G  + G   G  GK S     D +GE F ++     Y D   ID   +K+SKNG+
Sbjct  48   ANIAVGLARLGKKIGFIGKVSK----DQFGE-FVVN-----YFDNEGIDTSQIKYSKNGE  97

Query  211  DLGLAF-EIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFV---ALSKAP  262
            +LGL F EI    ++  L     + + EL  +  +EE+    K   +   AL+K+P
Sbjct  98   NLGLTFTEIASPTESSILMYRQGIADLELNVDEIDEEYIKNTKAIVISGTALAKSP  153


>sp|Q54900|RECG_STRPN ATP-dependent DNA helicase RecG OS=Streptococcus 
pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) 
OX=170187 GN=recG PE=3 SV=2
Length=671

 Score = 35.8 bits (81),  Expect = 1.5, Method: Compositional matrix adjust.
 Identities = 24/83 (29%), Positives = 41/83 (49%), Gaps = 2/83 (2%)

Query  542  CVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH  601
               LHG  K  E+ Q ++ FK+     L+ T V   G+++     +I +       + +H
Sbjct  498  VALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLH  557

Query  602  RI-GRVGRAERMGLAISLVATEK  623
            ++ GRVGR ++   A+ LVA  K
Sbjct  558  QLRGRVGRGDKQSYAV-LVANPK  579


>sp|Q16XV7|FBSP1_AEDAE F-box/SPRY domain-containing protein 1 
OS=Aedes aegypti OX=7159 GN=Fsn PE=3 SV=1
Length=258

 Score = 35.4 bits (80),  Expect = 1.6, Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 67/180 (37%), Gaps = 27/180 (15%)

Query  94   NPYDRGSAFAIGSDGLCCQSREVKE-WHGCRATKGLMKGKHYYEVSCHDQ--GLCRVGWS  150
            NPYD      I  +G       V +   G R   G   G+H +EV        +  VG +
Sbjct  87   NPYDCSRHVYIKPNGFTLHRNPVAQSTDGSRGKIGFQHGRHAWEVRWEGPLGTVAVVGIA  146

Query  151  TMQASLD-------LGTDKFGFGFG-------GTGKKSHNKQFDNYGEEFTMHDTIGCYL  196
            T  A++        LG D   +G+          G         N   ++ + + I   L
Sbjct  147  TKDAAIQCHGYYALLGADDQSWGWNLVDNLLLHNGDAHGIYPLLNNAPKYKVGERIRVIL  206

Query  197  DIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFP--ACVLKNAELKFNFGEEEFKFPPKDG  254
            D D   + F KN + LG+AF   P   ++  +P  A V  N E+        +  PP DG
Sbjct  207  DCDDNTLSFEKNYEFLGVAFTDLP---DKVFYPTVAAVYGNTEISM-----VYLGPPLDG  258


>sp|B0X9V1|FBSP1_CULQU F-box/SPRY domain-containing protein 1 
OS=Culex quinquefasciatus OX=7176 GN=Fsn PE=3 SV=1
Length=258

 Score = 35.0 bits (79),  Expect = 1.7, Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 67/180 (37%), Gaps = 27/180 (15%)

Query  94   NPYDRGSAFAIGSDGLCCQSREVKE-WHGCRATKGLMKGKHYYEVSCHDQ--GLCRVGWS  150
            NPYD      I  +G       V +   G R   G   G+H +EV        +  VG +
Sbjct  87   NPYDCSRHVYIKPNGFTLHRNPVAQSTDGSRGKIGFQHGRHAWEVRWEGPLGTVAVVGIA  146

Query  151  TMQASLD-------LGTDKFGFGFG-------GTGKKSHNKQFDNYGEEFTMHDTIGCYL  196
            T  A++        LG D   +G+          G         N   ++ + + I   L
Sbjct  147  TKDAAIQCHGYYALLGADDQSWGWNLVDNLLLHNGDAHGIYPLLNNAPKYKVGERIRVIL  206

Query  197  DIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFP--ACVLKNAELKFNFGEEEFKFPPKDG  254
            D D   + F KN + LG+AF   P   ++  +P  A V  N E+        +  PP DG
Sbjct  207  DCDDNTLSFEKNYEFLGVAFTDLP---DKVFYPTVAAVYGNTEISM-----VYLGPPLDG  258


>sp|P0C5H7|DCL2_EMENI Dicer-like protein 2 OS=Emericella nidulans 
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) 
OX=227321 GN=dcl2 PE=3 SV=1
Length=1429

 Score = 35.8 bits (81),  Expect = 1.8, Method: Compositional matrix adjust.
 Identities = 16/52 (31%), Positives = 26/52 (50%), Gaps = 0/52 (0%)

Query  557  NLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
             L+ F+ G    ++ TDV   GID+     VI   +P   ++++ R GR  R
Sbjct  407  TLDDFRYGRKNLIVATDVLKEGIDVSACSVVICYNIPKGFESFIQRRGRARR  458


 Score = 33.9 bits (76),  Expect = 8.6, Method: Compositional matrix adjust.
 Identities = 45/208 (22%), Positives = 89/208 (43%), Gaps = 22/208 (11%)

Query  334  SVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR-MHNQIP  392
            +VLE G+ ++V TP  L D ++ G + +S++  L+ DEA   + +  ++ I R  ++   
Sbjct  106  AVLE-GLQVIVSTPAVLHDAMTHGFVRISRLGLLIFDEAHHCIRKHPTNMIMRNFYHPAL  164

Query  393  QVTSDGKRLQVIVCSAT-------LHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
            Q    G   +++  +A+       L + ++   S          +L     +P+    + 
Sbjct  165  QEYGPGAVPRILGLTASAGSSREGLQTIEMNLNSVCTTPQAHRQELLEYTHMPELRRVLY  224

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK------GEYAVR  499
             P+  +   LWE  G +      +  +DNT           +A+ I +       EY +R
Sbjct  225  TPLMKENASLWE--GST---LQKLLERDNTYCSGQMKTFVCKAVHIFQELGIWAAEYFIR  279

Query  500  AIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
            A  E  +  A  +  +KID D  E+ ++
Sbjct  280  ASVEELLSHA--YVHSKIDLDYDEREYL  305


>sp|Q8IYD8|FANCM_HUMAN Fanconi anemia group M protein OS=Homo 
sapiens OX=9606 GN=FANCM PE=1 SV=2
Length=2048

 Score = 35.8 bits (81),  Expect = 2.0, Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM  612
            E+ + +++F+ G    L+ T V   G+DI  V  +I           V R+GR GR +R 
Sbjct  524  EQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDSQKSPIRLVQRMGRTGR-KRQ  582

Query  613  GLAISLVATEKEKVWYHVCSSRGKGCY  639
            G  + +++  +E+  Y+   S  +  Y
Sbjct  583  GRIVIILSEGREERIYNQSQSNKRSIY  609


>sp|Q6BRF0|MPH1_DEBHA ATP-dependent DNA helicase MPH1 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=MPH1 PE=3 SV=2
Length=1105

 Score = 35.8 bits (81),  Expect = 2.1, Method: Compositional matrix adjust.
 Identities = 20/67 (30%), Positives = 34/67 (51%), Gaps = 1/67 (1%)

Query  558  LERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAIS  617
            +++FKKG+   L+ T +   G+DI  V  ++           + R+GR GR +R G  + 
Sbjct  545  IKKFKKGEYNILVATSIGEEGLDIGEVDLIVCYDSTSSPIKNIQRMGRTGR-KRDGKVLL  603

Query  618  LVATEKE  624
            L A  +E
Sbjct  604  LFAGNEE  610


>sp|P25055|PGKA_CRIFA Phosphoglycerate kinase, glycosomal OS=Crithidia 
fasciculata OX=5656 GN=PGKA PE=3 SV=1
Length=505

 Score = 35.4 bits (80),  Expect = 2.1, Method: Compositional matrix adjust.
 Identities = 27/76 (36%), Positives = 34/76 (45%), Gaps = 18/76 (24%)

Query  306  IKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVR  365
            I  F K ++NP    L IIGG    D++ VLEN +D V       D L   G L  + +R
Sbjct  282  ISYFSKVLNNPPRPLLAIIGGAKLSDKMQVLENLLDCV-------DSLFIGGGLAYTFLR  334

Query  366  FLVLDEADGLLSQGYS  381
                       SQGYS
Sbjct  335  -----------SQGYS  339


>sp|F4HYD7|RANBM_ARATH Ran-binding protein M homolog OS=Arabidopsis 
thaliana OX=3702 GN=RANBPM PE=1 SV=1
Length=467

 Score = 35.4 bits (80),  Expect = 2.2, Method: Compositional matrix adjust.
 Identities = 26/88 (30%), Positives = 45/88 (51%), Gaps = 12/88 (14%)

Query  164  GFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMK  223
            G+ + G GK       + +G +FT  D +G  ++       F+KNG  +G   +IP  ++
Sbjct  144  GYLYRGQGKG------EPFGPKFTKDDAVGGGINYASQEFFFTKNGTIVG---KIPKDIR  194

Query  224  NQALFPACVL--KNAELKFNFGEEEFKF  249
               LFP   +  +N E+  NFG+++F F
Sbjct  195  GH-LFPTVAVHSQNEEVLVNFGKKKFAF  221


>sp|Q7SCC1|DCL2_NEUCR Dicer-like protein 2 OS=Neurospora crassa 
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / 
FGSC 987) OX=367110 GN=dcl-2 PE=2 SV=4
Length=1534

 Score = 35.4 bits (80),  Expect = 2.2, Method: Compositional matrix adjust.
 Identities = 22/86 (26%), Positives = 38/86 (44%), Gaps = 1/86 (1%)

Query  546  HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR  605
            H D    E   +LE F+ G    L+ T V   GID+     VI    P   ++++ R GR
Sbjct  466  HMDMTKKEDMTSLEGFRLGRFNLLVATSVLEEGIDVPICNLVICFDEPSNIKSFIQRRGR  525

Query  606  VGR-AERMGLAISLVATEKEKVWYHV  630
                +  + L +   ++E    W+++
Sbjct  526  AREVSSTLYLMVQNASSESATDWHNL  551


>sp|Q9Z129|RECQ1_MOUSE ATP-dependent DNA helicase Q1 OS=Mus musculus 
OX=10090 GN=Recql PE=1 SV=2
Length=648

 Score = 35.4 bits (80),  Expect = 2.4, Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 26/139 (19%)

Query  475  TRPGANSPEMWSEAI-KILKGEYAVRAIKEHKMDQAIIFCRTKIDCD----NLEQYFIQQ  529
             R   +S E ++E I K++ G Y        K    II+C ++ D +    +L++  I  
Sbjct  290  VRQKPSSAEDFTEDIVKLINGRY--------KGQSGIIYCFSQKDSEQITISLQKLGIHA  341

Query  530  GGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVIN  589
            G               H + +P ++ +   ++   +++ ++ T     GID   V +VI+
Sbjct  342  GT-------------YHANMEPEDKTKVHTQWSANELQVVVATVAFGMGIDKPDVRFVIH  388

Query  590  VTLPDEKQNYVHRIGRVGR  608
             ++    +NY    GR GR
Sbjct  389  HSMSKSMENYYQESGRAGR  407


>sp|Q6AYJ1|RECQ1_RAT ATP-dependent DNA helicase Q1 OS=Rattus norvegicus 
OX=10116 GN=Recql PE=1 SV=1
Length=621

 Score = 35.4 bits (80),  Expect = 2.4, Method: Compositional matrix adjust.
 Identities = 16/63 (25%), Positives = 32/63 (51%), Gaps = 0/63 (0%)

Query  546  HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR  605
            H + +P +R +   ++   +++ ++ T     GID   V +VI+ ++    +NY    GR
Sbjct  345  HANMEPEDRTKVHTQWSANELQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGR  404

Query  606  VGR  608
             GR
Sbjct  405  AGR  407


>sp|Q2HG76|MPH1_CHAGB ATP-dependent DNA helicase MPH1 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=MPH1 PE=3 SV=1
Length=1134

 Score = 35.4 bits (80),  Expect = 2.4, Method: Compositional matrix adjust.
 Identities = 20/70 (29%), Positives = 34/70 (49%), Gaps = 1/70 (1%)

Query  556  QNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLA  615
            + +E+FK G    L+ T +   G+DI  V  ++           + R+GR GR +R G  
Sbjct  600  ETIEKFKNGGFNVLVATSIGEEGLDIGQVDLIVCYDASASPIRMLQRMGRTGR-KRAGNI  658

Query  616  ISLVATEKEK  625
            + L+   KE+
Sbjct  659  VLLLMKGKEE  668


>sp|A1C9M6|DCL2_ASPCL Dicer-like protein 2 OS=Aspergillus clavatus 
(strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / 
NRRL 1 / QM 1276 / 107) OX=344612 GN=dcl2 PE=3 SV=1
Length=1389

 Score = 35.4 bits (80),  Expect = 2.4, Method: Compositional matrix adjust.
 Identities = 22/69 (32%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
            H +   L+ F+ G    +I TDV   GIDI     V+    P   +++V R GR  R ++
Sbjct  438  HGQLSTLDDFRSGHKNLIIATDVLEEGIDISACSVVVCYDKPPNLKSFVQRRGR-ARQKQ  496

Query  612  MGLAISLVA  620
               AI   A
Sbjct  497  STYAIMFPA  505


>sp|Q4WA22|DCL2_ASPFU Dicer-like protein 2 OS=Aspergillus fumigatus 
(strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) 
OX=330879 GN=dcl2 PE=3 SV=2
Length=1388

 Score = 35.4 bits (80),  Expect = 2.5, Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 0/57 (0%)

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAE  610
            ++  L+ F+ G    +I TDV   GID+     V+    P   ++++ R GR  R +
Sbjct  440  QRDTLDDFRSGRKNLIIATDVLEEGIDLSACSVVVCYDKPPNLKSFIQRRGRARRKQ  496


>sp|O53873|XPB_MYCTU DNA helicase XPB OS=Mycobacterium tuberculosis 
(strain ATCC 25618 / H37Rv) OX=83332 GN=XPB PE=1 SV=2
Length=549

 Score = 35.0 bits (79),  Expect = 2.6, Method: Compositional matrix adjust.
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query  534  DKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT-L  592
            D+ G +     + G  +  ER+   + F++G+V  L+ + VA   ID+      + V+  
Sbjct  423  DELGAELGAPVIQGSTRTSEREALFDAFRRGEVATLVVSKVANFSIDLPEAAVAVQVSGT  482

Query  593  PDEKQNYVHRIGRVGR  608
               +Q    R+GR+ R
Sbjct  483  FGSRQEEAQRLGRILR  498


>sp|Q8CSV3|RECG_STAES ATP-dependent DNA helicase RecG OS=Staphylococcus 
epidermidis (strain ATCC 12228 / FDA PCI 1200) OX=176280 
GN=recG PE=3 SV=1
Length=682

 Score = 35.4 bits (80),  Expect = 2.6, Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 48/98 (49%), Gaps = 8/98 (8%)

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
            +Q   G +K G       LHG     ++ Q +++F K ++  L+ T V   G+++    +
Sbjct  498  LQSDYGNEKVG------LLHGKMSAEDKDQVMQKFSKHEIDILVSTTVVEVGVNVPNATF  551

Query  587  VINVTLPDEKQNYVHRI-GRVGRAERMGLAISLVATEK  623
            ++         + +H++ GRVGR+E     + L+A+ K
Sbjct  552  MMIYDADRFGLSTLHQLRGRVGRSEHQSYCV-LIASPK  588


>sp|Q9FT73|RECQ2_ARATH ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis 
thaliana OX=3702 GN=RECQL2 PE=1 SV=1
Length=705

 Score = 35.4 bits (80),  Expect = 2.6, Method: Compositional matrix adjust.
 Identities = 22/102 (22%), Positives = 45/102 (44%), Gaps = 9/102 (9%)

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
            +  I++C ++ +C+ +     ++G   D           H D   + R++   R+ K  +
Sbjct  314  ESGIVYCFSRKECEQIAGDLRERGISAD---------YYHADMDANMREKVHMRWSKNKL  364

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
            + ++ T     GI+   V +VI+ +L    + Y    GR GR
Sbjct  365  QVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGR  406


>sp|Q09884|DCR1_SCHPO Protein Dicer OS=Schizosaccharomyces pombe 
(strain 972 / ATCC 24843) OX=284812 GN=dcr1 PE=1 SV=1
Length=1374

 Score = 35.4 bits (80),  Expect = 2.6, Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 36/93 (39%), Gaps = 9/93 (10%)

Query  530  GGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVIN  589
            G GP  +G +FS            +K  L +FK G    LI T VA  GID+     VI 
Sbjct  396  GHGPSDQG-EFSMTF-------RRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIR  447

Query  590  VTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
              +      YV   GR  RA      I L   E
Sbjct  448  FNICRTVTQYVQSRGR-ARAMASKFLIFLNTEE  479


>sp|Q9D5L7|SPSB1_MOUSE SPRY domain-containing SOCS box protein 
1 OS=Mus musculus OX=10090 GN=Spsb1 PE=1 SV=1
Length=273

 Score = 34.7 bits (78),  Expect = 2.7, Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 16/116 (14%)

Query  137  VSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGT-----GKKSHNKQFDNY---GEEFTM  188
            V+  D  L  VG++T+  +     + +G+  G       GK   +K +  +    E F +
Sbjct  117  VATADAPLHSVGYTTLVGN---NHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIV  173

Query  189  HDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFP--ACVLKNAELKFNF  242
             D+    LD+D G + F  +G+ +G+AF     +K + L+P  + V  + E++  +
Sbjct  174  PDSFLVALDMDDGTLSFIVDGQYMGVAFR---GLKGKKLYPVVSAVWGHCEIRMRY  226


>sp|Q8K9I7|SYN_BUCAP Asparagine--tRNA ligase OS=Buchnera aphidicola 
subsp. Schizaphis graminum (strain Sg) OX=198804 GN=asnS 
PE=3 SV=1
Length=466

 Score = 35.0 bits (79),  Expect = 2.7, Method: Compositional matrix adjust.
 Identities = 23/77 (30%), Positives = 41/77 (53%), Gaps = 9/77 (12%)

Query  296  RELAEQTLNNIKQFKKYIDNP---KLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDD  352
            + L +  +N+IK  K YIDN    +L++ L +  +         ++ +DI++ +  + D+
Sbjct  275  KSLLKYCINDIKFLKNYIDNDIINRLKKFLSVNFIRIN-----YKDAIDILLNSKKKFDN  329

Query  353  LVSTG-KLNLSQVRFLV  368
            +VS G  LN    RFLV
Sbjct  330  VVSFGVDLNAEHERFLV  346


>sp|Q2H0G2|DCL1_CHAGB Dicer-like protein 1 OS=Chaetomium globosum 
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / 
NRRL 1970) OX=306901 GN=DCL1 PE=3 SV=2
Length=1607

 Score = 35.4 bits (80),  Expect = 2.8, Method: Compositional matrix adjust.
 Identities = 41/158 (26%), Positives = 71/158 (45%), Gaps = 23/158 (15%)

Query  489  IKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGD  548
            ++IL+GE+  R + +HK  + I+F R + +  +L    +QQ   P+ +        L G 
Sbjct  466  LRILRGEF--RGV-DHKR-RCIVFVRQR-NVASLLTDLLQQ---PEMRIPGLEPGILVGG  517

Query  549  RKPHERKQNLE-----------RFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQ  597
             +P     N +           +FKKG++  +  T VA  G+DI     +I   L     
Sbjct  518  GRPEASYDNAKVTYRDQVLTIIKFKKGELNCIFATSVAEEGLDIPDCNVIIRYDL---NN  574

Query  598  NYVHRIGRVGRAERMG-LAISLVATEKEKVWYHVCSSR  634
              +  I   GRA + G + I +V +E E+    VC ++
Sbjct  575  TLIQYIQSRGRARQEGSIYIHMVESENEEHVKKVCQNQ  612


>sp|P84634|DCL4_ARATH Dicer-like protein 4 OS=Arabidopsis thaliana 
OX=3702 GN=DCL4 PE=1 SV=2
Length=1702

 Score = 35.4 bits (80),  Expect = 2.8, Method: Compositional matrix adjust.
 Identities = 36/159 (23%), Positives = 62/159 (39%), Gaps = 36/159 (23%)

Query  558  LERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVG----------  607
            L+RF+  ++  L+ T V   G+DI     VI   LP+   +++   GR            
Sbjct  541  LKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPETVTSFIQSRGRARMPQSEYAFLV  600

Query  608  ----------------RAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTI  651
                              +RM L I+  ++E+       C    +  Y  ++ E G C  
Sbjct  601  DSGNEKEMDLIENFKVNEDRMNLEITYRSSEE------TCPRLDEELY--KVHETGACIS  652

Query  652  WYNEMQLLSEIEEHL-NCTISQVEPDIKV-PVDEFDGKV  688
              + + LL +    L +    Q +P+ +  PVDEF G +
Sbjct  653  GGSSISLLYKYCSRLPHDEFFQPKPEFQFKPVDEFGGTI  691


>sp|B7IEY7|UVRB_THEAB UvrABC system protein B OS=Thermosipho africanus 
(strain TCF52B) OX=484019 GN=uvrB PE=3 SV=1
Length=661

 Score = 35.0 bits (79),  Expect = 2.8, Method: Compositional matrix adjust.
 Identities = 24/107 (22%), Positives = 48/107 (45%), Gaps = 14/107 (13%)

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
            ++A++   TK   + L +Y I+ G            + +H +    ER + L++ ++GDV
Sbjct  442  ERALVTVLTKKTAEKLAEYLIEMG---------IKALYIHSELDTIERVEVLKKLRRGDV  492

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDE-----KQNYVHRIGRVGR  608
              ++  ++   G+D+  V  V  +    E     +   +  IGRV R
Sbjct  493  EVVVGVNLLREGLDLPEVSLVAILDSDTEGFLRSETTLIQIIGRVAR  539


>sp|Q0HLI3|MIAB_SHESM tRNA-2-methylthio-N(6)-dimethylallyladenosine 
synthase OS=Shewanella sp. (strain MR-4) OX=60480 GN=miaB 
PE=3 SV=1
Length=474

 Score = 35.0 bits (79),  Expect = 2.8, Method: Compositional matrix adjust.
 Identities = 28/125 (22%), Positives = 47/125 (38%), Gaps = 1/125 (1%)

Query  41   DVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGS  100
            D++     G       S P I+      + + EG     +I  G S    + + PY RG 
Sbjct  113  DMIEQVRRGEKAVIDVSFPEIEKFDRLPEPRAEGPTAFVSIMEGCSKYCSFCVVPYTRGE  172

Query  101  AFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGT  160
              +  SD +  +  ++ E  G R    L +  + Y  + HD G+C         +   G 
Sbjct  173  EVSRPSDDIILEIAQLAE-QGVREVNLLGQNVNAYRGATHDGGICTFAELLRYVAAIDGI  231

Query  161  DKFGF  165
            D+  F
Sbjct  232  DRIRF  236


>sp|Q9FT72|RQL3_ARATH ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis 
thaliana OX=3702 GN=RECQL3 PE=1 SV=1
Length=713

 Score = 35.0 bits (79),  Expect = 2.9, Method: Compositional matrix adjust.
 Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 9/100 (9%)

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
            AII+C  +  CD+L  +    G          S    H       R   L+ +     + 
Sbjct  259  AIIYCLERTTCDDLSVHLSSIG---------ISSAAYHAGLNSKMRSTVLDDWLSSKKQI  309

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
            ++ T     GID   V  V +  +P   +++    GR GR
Sbjct  310  IVATVAFGMGIDKKDVRMVCHFNIPKSMESFYQESGRAGR  349


>sp|Q3ATT8|UVRB_CHLCH UvrABC system protein B OS=Chlorobium chlorochromatii 
(strain CaD3) OX=340177 GN=uvrB PE=3 SV=1
Length=681

 Score = 35.0 bits (79),  Expect = 3.1, Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 9/80 (11%)

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
            +A++   TK   ++L  +F + G           C  LH + K  ER Q L   + GD+ 
Sbjct  452  KALVMTLTKRMSEDLHDFFRKAG---------IRCRYLHSEIKSLERMQILRELRAGDID  502

Query  568  FLICTDVAARGIDIHGVPYV  587
             L+  ++   G+D+  V  V
Sbjct  503  VLVGVNLLREGLDLPEVSLV  522


>sp|Q96BD6|SPSB1_HUMAN SPRY domain-containing SOCS box protein 
1 OS=Homo sapiens OX=9606 GN=SPSB1 PE=1 SV=1
Length=273

 Score = 34.3 bits (77),  Expect = 3.1, Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 16/116 (14%)

Query  137  VSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGT-----GKKSHNKQFDNY---GEEFTM  188
            V+  D  L  VG++T+  +     + +G+  G       GK   +K +  +    E F +
Sbjct  117  VATADAPLHSVGYTTLVGN---NHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIV  173

Query  189  HDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFP--ACVLKNAELKFNF  242
             D+    LD+D G + F  +G+ +G+AF     +K + L+P  + V  + E++  +
Sbjct  174  PDSFLVALDMDDGTLSFIVDGQYMGVAFR---GLKGKKLYPVVSAVWGHCEIRMRY  226


>sp|Q5E9X6|SPSB1_BOVIN SPRY domain-containing SOCS box protein 
1 OS=Bos taurus OX=9913 GN=SPSB1 PE=2 SV=1
Length=273

 Score = 34.3 bits (77),  Expect = 3.1, Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 16/116 (14%)

Query  137  VSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGT-----GKKSHNKQFDNY---GEEFTM  188
            V+  D  L  VG++T+  +     + +G+  G       GK   +K +  +    E F +
Sbjct  117  VATADAPLHSVGYTTLVGN---NHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIV  173

Query  189  HDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFP--ACVLKNAELKFNF  242
             D+    LD+D G + F  +G+ +G+AF     +K + L+P  + V  + E++  +
Sbjct  174  PDSFLVALDMDDGTLSFIVDGQYMGVAFR---GLKGKKLYPVVSAVWGHCEIRMRY  226


>sp|Q0HXT7|MIAB_SHESR tRNA-2-methylthio-N(6)-dimethylallyladenosine 
synthase OS=Shewanella sp. (strain MR-7) OX=60481 GN=miaB 
PE=3 SV=1
Length=474

 Score = 34.7 bits (78),  Expect = 3.2, Method: Compositional matrix adjust.
 Identities = 28/125 (22%), Positives = 47/125 (38%), Gaps = 1/125 (1%)

Query  41   DVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGS  100
            D++     G       S P I+      + + EG     +I  G S    + + PY RG 
Sbjct  113  DMIEQVRRGEKAVIDVSFPEIEKFDRLPEPRAEGPTAFVSIMEGCSKYCSFCVVPYTRGE  172

Query  101  AFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGT  160
              +  SD +  +  ++ E  G R    L +  + Y  + HD G+C         +   G 
Sbjct  173  EVSRPSDDIILEIAQLAE-QGVREVNLLGQNVNAYRGATHDGGICTFAELLRYVAAIDGI  231

Query  161  DKFGF  165
            D+  F
Sbjct  232  DRIRF  236


>sp|Q2H679|MRH4_CHAGB ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 
/ DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=MRH4 PE=3 
SV=1
Length=576

 Score = 34.7 bits (78),  Expect = 3.4, Method: Compositional matrix adjust.
 Identities = 75/348 (22%), Positives = 139/348 (40%), Gaps = 95/348 (27%)

Query  281  KFLPNA----PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL  336
            KF P+     P+A+++ P+ EL +Q L   K+     + P+            +DQ +  
Sbjct  260  KFEPHPNHARPRAIVLVPTSELVDQVLAASKK-----NFPR-----------GQDQTTAA  303

Query  337  EN-GVDIVVGTPG-RLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM-HNQIPQ  393
                +   + +P  R+  L+S+     S +     DEAD L  + ++   +++    +P 
Sbjct  304  STWSLPPRIFSPTWRIVTLISSRVCTTSSI-----DEADSLFDRSFAPETSKIVERAMPS  358

Query  394  VTSDGKRLQVIVCSATLHSFDVKKLSEKIM-HFPTWVDLKGED--SVPDTVHHVVV----  446
            +       Q+I+CSAT+     ++L   +  HFP  V +   +  ++P  V   V+    
Sbjct  359  LK------QLILCSATIP----RRLDNYLAAHFPNIVRIATPNLHAIPRRVQLGVIDVSK  408

Query  447  -PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAV---RAIK  502
             P+ P T  L      SH      H    T   A  P  W   + + KG  A+   R   
Sbjct  409  DPLPPTTSWL-----ASH------HGLCQT--SARPPRRWPSTL-VSKGIDAIALHRDTP  454

Query  503  EHKMDQAI-IFCRT------KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERK  555
            EH+  + +  F  T      K + +  +Q  + + GG  K+                   
Sbjct  455  EHRQSEMLNSFTTTEPMRLSKAEVEANKQAALAKAGGVSKR-------------------  495

Query  556  QNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI  603
                     + + ++ TD+A+RGID   V +V+   +P    +++HR+
Sbjct  496  ------HLANTKVIVATDLASRGIDTLAVRHVVLYDVPHTTIDFIHRL  537


 Score = 34.3 bits (77),  Expect = 5.3, Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 32/70 (46%), Gaps = 19/70 (27%)

Query  25   PTDIQAESIPLILGGG-------------------DVLMAAETGSGKTGAFSIPVIQIVY  65
            PT +Q  +IP +LG                     + L+AAETGSGKT A+ +P+I  + 
Sbjct  167  PTPVQRLAIPALLGQRIGQQRETNHRRAAPESKREEFLLAAETGSGKTLAYLLPIINALK  226

Query  66   ETLKDQQEGK  75
                D  + K
Sbjct  227  VAEADDVDAK  236


>sp|A6RIS1|MPH1_BOTFB ATP-dependent DNA helicase MPH1 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=mph1 PE=3 SV=2
Length=1229

 Score = 35.0 bits (79),  Expect = 3.5, Method: Compositional matrix adjust.
 Identities = 19/73 (26%), Positives = 35/73 (48%), Gaps = 1/73 (1%)

Query  556  QNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLA  615
            + + +FK G +  ++ T +   G+DI  V  ++           + R+GR GR +R G  
Sbjct  693  ETIRKFKAGGINVIVATSIGEEGLDIGEVDLIVCYDSSSSPIRMLQRMGRTGR-KRAGKI  751

Query  616  ISLVATEKEKVWY  628
            + L+   KE+  Y
Sbjct  752  VLLLMRGKEEDSY  764


>sp|A8F8W9|UVRB_PSELT UvrABC system protein B OS=Pseudothermotoga 
lettingae (strain ATCC BAA-301 / DSM 14385 / NBRC 107922 
/ TMO) OX=416591 GN=uvrB PE=3 SV=1
Length=656

 Score = 34.7 bits (78),  Expect = 3.6, Method: Compositional matrix adjust.
 Identities = 25/109 (23%), Positives = 50/109 (46%), Gaps = 18/109 (17%)

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
            ++A+I   TK   + L +Y ++ G            + +H +    ER + L++ ++GDV
Sbjct  442  ERALITVLTKKTAEKLSEYLVEMG---------IKSLYIHSELDAIERIEVLKKLRRGDV  492

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNY-------VHRIGRVGR  608
              ++  ++   G+D+  V  V    L  +K+ +       +  IGRV R
Sbjct  493  DAVVGINLLREGLDLPEVSLV--AILDSDKEGFLRSETTLIQIIGRVAR  539


>sp|A7EFH4|MPH1_SCLS1 ATP-dependent DNA helicase mph1 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=mph1 PE=3 SV=1
Length=1235

 Score = 34.7 bits (78),  Expect = 3.8, Method: Compositional matrix adjust.
 Identities = 19/73 (26%), Positives = 35/73 (48%), Gaps = 1/73 (1%)

Query  556  QNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLA  615
            + + +FK G +  ++ T +   G+DI  V  ++           + R+GR GR +R G  
Sbjct  687  ETIRKFKAGGINVIVATSIGEEGLDIGEVDLIVCYDSSSSPIRMLQRMGRTGR-KRAGKI  745

Query  616  ISLVATEKEKVWY  628
            + L+   KE+  Y
Sbjct  746  VLLLMRGKEEDSY  758


>sp|A3GH78|MPH1_PICST ATP-dependent DNA helicase MPH1 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=MPH1 PE=3 SV=3
Length=1050

 Score = 34.7 bits (78),  Expect = 4.1, Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 36/71 (51%), Gaps = 1/71 (1%)

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
            +K+ ++ FK+G    L+ T +   G+DI  V  +I           + R+GR GR +R G
Sbjct  531  QKEIIKNFKQGTYNILVATSIGEEGLDIGEVDLIICYDSTSSPIKNIQRMGRTGR-KRDG  589

Query  614  LAISLVATEKE  624
              + L ++ +E
Sbjct  590  KVVLLFSSNEE  600


>sp|A0KTX4|MIAB_SHESA tRNA-2-methylthio-N(6)-dimethylallyladenosine 
synthase OS=Shewanella sp. (strain ANA-3) OX=94122 GN=miaB 
PE=3 SV=1
Length=474

 Score = 34.3 bits (77),  Expect = 4.4, Method: Compositional matrix adjust.
 Identities = 28/125 (22%), Positives = 47/125 (38%), Gaps = 1/125 (1%)

Query  41   DVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGS  100
            D++     G       S P I+      + + EG     +I  G S    + + PY RG 
Sbjct  113  DMIDQVRRGEKAVIDVSFPEIEKFDRLPEPRAEGPTAFVSIMEGCSKYCSFCVVPYTRGE  172

Query  101  AFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGT  160
              +  SD +  +  ++ E  G R    L +  + Y  + HD G+C         +   G 
Sbjct  173  EVSRPSDDIILEIAQLAE-QGVREVNLLGQNVNAYRGATHDGGICTFAELLRYVAAIDGI  231

Query  161  DKFGF  165
            D+  F
Sbjct  232  DRIRF  236


>sp|Q7SDF3|MPH1_NEUCR ATP-dependent DNA helicase mph1 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=mph1 PE=3 SV=1
Length=1168

 Score = 34.7 bits (78),  Expect = 4.5, Method: Compositional matrix adjust.
 Identities = 20/70 (29%), Positives = 34/70 (49%), Gaps = 1/70 (1%)

Query  556  QNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLA  615
            + +E+FK G    L+ T +   G+DI  V  ++           + R+GR GR +R G  
Sbjct  568  ETIEKFKNGAHNVLVATSIGEEGLDIGQVDLIVCYDASASPIRMLQRMGRTGR-KRAGNI  626

Query  616  ISLVATEKEK  625
            + L+   KE+
Sbjct  627  VLLLMKGKEE  636


>sp|Q9KTE0|MIAB_VIBCH tRNA-2-methylthio-N(6)-dimethylallyladenosine 
synthase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 
/ El Tor Inaba N16961) OX=243277 GN=miaB PE=3 SV=1
Length=474

 Score = 34.3 bits (77),  Expect = 4.6, Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 3/126 (2%)

Query  41   DVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGS  100
            +++  ++T        S P I+      + + EG     +I  G S    + + PY RG 
Sbjct  113  EMIKQSQTSDAPVMDISFPEIEKFDRLPEPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGE  172

Query  101  AFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVG-WSTMQASLDLG  159
              +   D +  +  ++ E  G R    L +  + Y  + HD G+C       + A++D G
Sbjct  173  EVSRPMDDVLFEIAQLAE-QGVREVNLLGQNVNAYRGATHDGGICSFAELLRLVATID-G  230

Query  160  TDKFGF  165
             D+  F
Sbjct  231  IDRIRF  236


>sp|A5F2X6|MIAB_VIBC3 tRNA-2-methylthio-N(6)-dimethylallyladenosine 
synthase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 
/ Classical Ogawa 395 / O395) OX=345073 GN=miaB PE=3 SV=1
Length=474

 Score = 34.3 bits (77),  Expect = 4.6, Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 3/126 (2%)

Query  41   DVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGS  100
            +++  ++T        S P I+      + + EG     +I  G S    + + PY RG 
Sbjct  113  EMIKQSQTSDAPVMDISFPEIEKFDRLPEPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGE  172

Query  101  AFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVG-WSTMQASLDLG  159
              +   D +  +  ++ E  G R    L +  + Y  + HD G+C       + A++D G
Sbjct  173  EVSRPMDDVLFEIAQLAE-QGVREVNLLGQNVNAYRGATHDGGICSFAELLRLVATID-G  230

Query  160  TDKFGF  165
             D+  F
Sbjct  231  IDRIRF  236


>sp|Q5AQN1|CCLA_EMENI COMPASS component cclA OS=Emericella nidulans 
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / 
M139) OX=227321 GN=cclA PE=3 SV=1
Length=607

 Score = 34.3 bits (77),  Expect = 4.6, Method: Compositional matrix adjust.
 Identities = 30/127 (24%), Positives = 47/127 (37%), Gaps = 27/127 (21%)

Query  97   DRGSAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEV-------------------  137
            D  +A     D L   + E   WH  RA     +G +YYE                    
Sbjct  183  DSPAAILFSKDALAVTTNE--PWHTARANVCAREGTYYYEARIISGIMSSSEATTSNGSN  240

Query  138  SCHDQGLCRVGWSTMQASLD--LGTDKFGFGFGGTGKKSHNKQFDNY----GEEFTMHDT  191
            +   +G  R+G++  +A LD  +G D +G+G      +  N+    Y    GE     D 
Sbjct  241  ALPSRGHVRLGFARREADLDVNVGVDCYGYGIRDVNGEVVNRMRCEYFFPKGESIREGDV  300

Query  192  IGCYLDI  198
            IG  + +
Sbjct  301  IGMLITL  307


>sp|Q3Z5V2|RAPA_SHISS RNA polymerase-associated protein RapA OS=Shigella 
sonnei (strain Ss046) OX=300269 GN=rapA PE=3 SV=1
Length=968

 Score = 34.7 bits (78),  Expect = 4.7, Method: Compositional matrix adjust.
 Identities = 26/143 (18%), Positives = 57/143 (40%), Gaps = 16/143 (11%)

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
            E+ +  +  H+  + ++ C        LEQ   ++ G              H      ER
Sbjct  492  EWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREG--------IRAAVFHEGMSIIER  543

Query  555  KQNLERFKKGDV--RFLICTDVAARGIDIHGVPYVINVTL---PDEKQNYVHRIGRVGRA  609
             +    F + D   + L+C+++ + G +     +++   L   PD  +  + R+ R+G+A
Sbjct  544  DRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQA  603

Query  610  ERMGLAISLVATEKEKV---WYH  629
              + + +  +    + V   WYH
Sbjct  604  HDIQIHVPYLEKTAQSVLVRWYH  626


>sp|A8ALP3|RAPA_CITK8 RNA polymerase-associated protein RapA OS=Citrobacter 
koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) 
OX=290338 GN=rapA PE=3 SV=1
Length=968

 Score = 34.7 bits (78),  Expect = 4.8, Method: Compositional matrix adjust.
 Identities = 30/163 (18%), Positives = 63/163 (39%), Gaps = 25/163 (15%)

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
            E+ +  +  H+  + ++ C        LEQ   ++ G              H      ER
Sbjct  492  EWLMGHLTSHRSQKVLVICAKAATALQLEQVLREREG--------IRAAVFHEGMSIIER  543

Query  555  KQNLERFKKGD--VRFLICTDVAARGIDIHGVPYVINVTL---PDEKQNYVHRIGRVGRA  609
             +    F + D   + L+C+++ + G +      ++   L   PD  +  + R+ R+G+A
Sbjct  544  DRAAAWFSEEDSGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQA  603

Query  610  ERMGLAISLVATEKEKV---WY--------HVCSSRGKGCYNT  641
              + + +  +    + V   WY        H C + G+  Y+T
Sbjct  604  HDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPT-GRAIYDT  645


>sp|O59025|HELS_PYRHO ATP-dependent DNA helicase Hel308 OS=Pyrococcus 
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 
/ NBRC 100139 / OT-3) OX=70601 GN=hel308 PE=3 SV=1
Length=715

 Score = 34.3 bits (77),  Expect = 4.8, Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 19/168 (11%)

Query  249  FPPKDGFVA--LSKAPDGYIVKSQHSGNAQVTQ----TKFLPNAPKALIVEPSRELAEQT  302
            +PP+   +   + K  +  I     SG   + +     + L    KA+ + P + LAE+ 
Sbjct  25   YPPQAEALTSGILKGENALIAIPTASGKTLIAEIAIVNRLLKEGGKAVYLVPLKALAEE-  83

Query  303  LNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLS  362
                K+FK + +   L+  +  G   ++D+      G DI++ T  + D L+  G   + 
Sbjct  84   --KFKEFKDW-EELGLKVAMATGDYDSKDEWL---GGYDIIIATAEKFDSLLRHGSSWIR  137

Query  363  QVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATL  410
             V+ LV+DE   +   G  D    +   I Q+ +   R Q+I  SAT+
Sbjct  138  NVKVLVVDEIHLI---GSRDRGATLEFIITQMLN---RAQIIGLSATI  179


>sp|Q7UDT5|RAPA_SHIFL RNA polymerase-associated protein RapA OS=Shigella 
flexneri OX=623 GN=rapA PE=3 SV=3
Length=968

 Score = 34.3 bits (77),  Expect = 4.8, Method: Compositional matrix adjust.
 Identities = 26/143 (18%), Positives = 57/143 (40%), Gaps = 16/143 (11%)

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
            E+ +  +  H+  + ++ C        LEQ   ++ G              H      ER
Sbjct  492  EWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREG--------IRAAVFHEGMSIIER  543

Query  555  KQNLERFKKGDV--RFLICTDVAARGIDIHGVPYVINVTL---PDEKQNYVHRIGRVGRA  609
             +    F + D   + L+C+++ + G +     +++   L   PD  +  + R+ R+G+A
Sbjct  544  DRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQA  603

Query  610  ERMGLAISLVATEKEKV---WYH  629
              + + +  +    + V   WYH
Sbjct  604  HDIQIHVPYLEKTAQSVLVRWYH  626


>sp|Q0T8D8|RAPA_SHIF8 RNA polymerase-associated protein RapA OS=Shigella 
flexneri serotype 5b (strain 8401) OX=373384 GN=rapA 
PE=3 SV=1
Length=968

 Score = 34.3 bits (77),  Expect = 4.8, Method: Compositional matrix adjust.
 Identities = 26/143 (18%), Positives = 57/143 (40%), Gaps = 16/143 (11%)

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
            E+ +  +  H+  + ++ C        LEQ   ++ G              H      ER
Sbjct  492  EWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREG--------IRAAVFHEGMSIIER  543

Query  555  KQNLERFKKGDV--RFLICTDVAARGIDIHGVPYVINVTL---PDEKQNYVHRIGRVGRA  609
             +    F + D   + L+C+++ + G +     +++   L   PD  +  + R+ R+G+A
Sbjct  544  DRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQA  603

Query  610  ERMGLAISLVATEKEKV---WYH  629
              + + +  +    + V   WYH
Sbjct  604  HDIQIHVPYLEKTAQSVLVRWYH  626


>sp|B7LVT0|RAPA_ESCF3 RNA polymerase-associated protein RapA OS=Escherichia 
fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 
18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / 
NCTC 12128 / CDC 0568-73) OX=585054 GN=rapA PE=3 SV=1
Length=968

 Score = 34.3 bits (77),  Expect = 4.8, Method: Compositional matrix adjust.
 Identities = 26/143 (18%), Positives = 57/143 (40%), Gaps = 16/143 (11%)

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
            E+ +  +  H+  + ++ C        LEQ   ++ G              H      ER
Sbjct  492  EWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREG--------IRAAVFHEGMSIIER  543

Query  555  KQNLERFKKGDV--RFLICTDVAARGIDIHGVPYVINVTL---PDEKQNYVHRIGRVGRA  609
             +    F + D   + L+C+++ + G +     +++   L   PD  +  + R+ R+G+A
Sbjct  544  DRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQA  603

Query  610  ERMGLAISLVATEKEKV---WYH  629
              + + +  +    + V   WYH
Sbjct  604  HDIQIHVPYLEKTAQSVLVRWYH  626


>sp|B1LFZ3|RAPA_ECOSM RNA polymerase-associated protein RapA OS=Escherichia 
coli (strain SMS-3-5 / SECEC) OX=439855 GN=rapA 
PE=3 SV=1
Length=968

 Score = 34.3 bits (77),  Expect = 4.8, Method: Compositional matrix adjust.
 Identities = 26/143 (18%), Positives = 57/143 (40%), Gaps = 16/143 (11%)

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
            E+ +  +  H+  + ++ C        LEQ   ++ G              H      ER
Sbjct  492  EWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREG--------IRAAVFHEGMSIIER  543

Query  555  KQNLERFKKGDV--RFLICTDVAARGIDIHGVPYVINVTL---PDEKQNYVHRIGRVGRA  609
             +    F + D   + L+C+++ + G +     +++   L   PD  +  + R+ R+G+A
Sbjct  544  DRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQA  603

Query  610  ERMGLAISLVATEKEKV---WYH  629
              + + +  +    + V   WYH
Sbjct  604  HDIQIHVPYLEKTAQSVLVRWYH  626


>sp|Q8FL92|RAPA_ECOL6 RNA polymerase-associated protein RapA OS=Escherichia 
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) 
OX=199310 GN=rapA PE=3 SV=3
Length=968

 Score = 34.3 bits (77),  Expect = 4.8, Method: Compositional matrix adjust.
 Identities = 26/143 (18%), Positives = 57/143 (40%), Gaps = 16/143 (11%)

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
            E+ +  +  H+  + ++ C        LEQ   ++ G              H      ER
Sbjct  492  EWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREG--------IRAAVFHEGMSIIER  543

Query  555  KQNLERFKKGDV--RFLICTDVAARGIDIHGVPYVINVTL---PDEKQNYVHRIGRVGRA  609
             +    F + D   + L+C+++ + G +     +++   L   PD  +  + R+ R+G+A
Sbjct  544  DRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQA  603

Query  610  ERMGLAISLVATEKEKV---WYH  629
              + + +  +    + V   WYH
Sbjct  604  HDIQIHVPYLEKTAQSVLVRWYH  626


>sp|Q0TLT1|RAPA_ECOL5 RNA polymerase-associated protein RapA OS=Escherichia 
coli O6:K15:H31 (strain 536 / UPEC) OX=362663 
GN=rapA PE=3 SV=1
Length=968

 Score = 34.3 bits (77),  Expect = 4.8, Method: Compositional matrix adjust.
 Identities = 26/143 (18%), Positives = 57/143 (40%), Gaps = 16/143 (11%)

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
            E+ +  +  H+  + ++ C        LEQ   ++ G              H      ER
Sbjct  492  EWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREG--------IRAAVFHEGMSIIER  543

Query  555  KQNLERFKKGDV--RFLICTDVAARGIDIHGVPYVINVTL---PDEKQNYVHRIGRVGRA  609
             +    F + D   + L+C+++ + G +     +++   L   PD  +  + R+ R+G+A
Sbjct  544  DRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQA  603

Query  610  ERMGLAISLVATEKEKV---WYH  629
              + + +  +    + V   WYH
Sbjct  604  HDIQIHVPYLEKTAQSVLVRWYH  626


>sp|B7M0F4|RAPA_ECO8A RNA polymerase-associated protein RapA OS=Escherichia 
coli O8 (strain IAI1) OX=585034 GN=rapA PE=3 SV=1
Length=968

 Score = 34.3 bits (77),  Expect = 4.8, Method: Compositional matrix adjust.
 Identities = 26/143 (18%), Positives = 57/143 (40%), Gaps = 16/143 (11%)

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
            E+ +  +  H+  + ++ C        LEQ   ++ G              H      ER
Sbjct  492  EWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREG--------IRAAVFHEGMSIIER  543

Query  555  KQNLERFKKGDV--RFLICTDVAARGIDIHGVPYVINVTL---PDEKQNYVHRIGRVGRA  609
             +    F + D   + L+C+++ + G +     +++   L   PD  +  + R+ R+G+A
Sbjct  544  DRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQA  603

Query  610  ERMGLAISLVATEKEKV---WYH  629
              + + +  +    + V   WYH
Sbjct  604  HDIQIHVPYLEKTAQSVLVRWYH  626


>sp|B7NHG5|RAPA_ECO7I RNA polymerase-associated protein RapA OS=Escherichia 
coli O7:K1 (strain IAI39 / ExPEC) OX=585057 GN=rapA 
PE=3 SV=1
Length=968

 Score = 34.3 bits (77),  Expect = 4.8, Method: Compositional matrix adjust.
 Identities = 26/143 (18%), Positives = 57/143 (40%), Gaps = 16/143 (11%)

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
            E+ +  +  H+  + ++ C        LEQ   ++ G              H      ER
Sbjct  492  EWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREG--------IRAAVFHEGMSIIER  543

Query  555  KQNLERFKKGDV--RFLICTDVAARGIDIHGVPYVINVTL---PDEKQNYVHRIGRVGRA  609
             +    F + D   + L+C+++ + G +     +++   L   PD  +  + R+ R+G+A
Sbjct  544  DRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQA  603

Query  610  ERMGLAISLVATEKEKV---WYH  629
              + + +  +    + V   WYH
Sbjct  604  HDIQIHVPYLEKTAQSVLVRWYH  626


>sp|B7UIA5|RAPA_ECO27 RNA polymerase-associated protein RapA OS=Escherichia 
coli O127:H6 (strain E2348/69 / EPEC) OX=574521 
GN=rapA PE=3 SV=1
Length=968

 Score = 34.3 bits (77),  Expect = 4.8, Method: Compositional matrix adjust.
 Identities = 26/143 (18%), Positives = 57/143 (40%), Gaps = 16/143 (11%)

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
            E+ +  +  H+  + ++ C        LEQ   ++ G              H      ER
Sbjct  492  EWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREG--------IRAAVFHEGMSIIER  543

Query  555  KQNLERFKKGDV--RFLICTDVAARGIDIHGVPYVINVTL---PDEKQNYVHRIGRVGRA  609
             +    F + D   + L+C+++ + G +     +++   L   PD  +  + R+ R+G+A
Sbjct  544  DRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQA  603

Query  610  ERMGLAISLVATEKEKV---WYH  629
              + + +  +    + V   WYH
Sbjct  604  HDIQIHVPYLEKTAQSVLVRWYH  626


>sp|A7ZHF0|RAPA_ECO24 RNA polymerase-associated protein RapA OS=Escherichia 
coli O139:H28 (strain E24377A / ETEC) OX=331111 
GN=rapA PE=3 SV=1
Length=968

 Score = 34.3 bits (77),  Expect = 4.8, Method: Compositional matrix adjust.
 Identities = 26/143 (18%), Positives = 57/143 (40%), Gaps = 16/143 (11%)

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
            E+ +  +  H+  + ++ C        LEQ   ++ G              H      ER
Sbjct  492  EWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREG--------IRAAVFHEGMSIIER  543

Query  555  KQNLERFKKGDV--RFLICTDVAARGIDIHGVPYVINVTL---PDEKQNYVHRIGRVGRA  609
             +    F + D   + L+C+++ + G +     +++   L   PD  +  + R+ R+G+A
Sbjct  544  DRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQA  603

Query  610  ERMGLAISLVATEKEKV---WYH  629
              + + +  +    + V   WYH
Sbjct  604  HDIQIHVPYLEKTAQSVLVRWYH  626


>sp|Q1RGE0|RAPA_ECOUT RNA polymerase-associated protein RapA OS=Escherichia 
coli (strain UTI89 / UPEC) OX=364106 GN=rapA PE=3 
SV=1
Length=968

 Score = 34.3 bits (77),  Expect = 4.9, Method: Compositional matrix adjust.
 Identities = 26/143 (18%), Positives = 57/143 (40%), Gaps = 16/143 (11%)

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
            E+ +  +  H+  + ++ C        LEQ   ++ G              H      ER
Sbjct  492  EWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREG--------IRAAVFHEGMSIIER  543

Query  555  KQNLERFKKGDV--RFLICTDVAARGIDIHGVPYVINVTL---PDEKQNYVHRIGRVGRA  609
             +    F + D   + L+C+++ + G +     +++   L   PD  +  + R+ R+G+A
Sbjct  544  DRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQA  603

Query  610  ERMGLAISLVATEKEKV---WYH  629
              + + +  +    + V   WYH
Sbjct  604  HDIQIHVPYLEKTAQSVLVRWYH  626


>sp|B6HZ39|RAPA_ECOSE RNA polymerase-associated protein RapA OS=Escherichia 
coli (strain SE11) OX=409438 GN=rapA PE=3 SV=1
Length=968

 Score = 34.3 bits (77),  Expect = 4.9, Method: Compositional matrix adjust.
 Identities = 26/143 (18%), Positives = 57/143 (40%), Gaps = 16/143 (11%)

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
            E+ +  +  H+  + ++ C        LEQ   ++ G              H      ER
Sbjct  492  EWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREG--------IRAAVFHEGMSIIER  543

Query  555  KQNLERFKKGDV--RFLICTDVAARGIDIHGVPYVINVTL---PDEKQNYVHRIGRVGRA  609
             +    F + D   + L+C+++ + G +     +++   L   PD  +  + R+ R+G+A
Sbjct  544  DRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQA  603

Query  610  ERMGLAISLVATEKEKV---WYH  629
              + + +  +    + V   WYH
Sbjct  604  HDIQIHVPYLEKTAQSVLVRWYH  626


>sp|B7N7T3|RAPA_ECOLU RNA polymerase-associated protein RapA OS=Escherichia 
coli O17:K52:H18 (strain UMN026 / ExPEC) OX=585056 
GN=rapA PE=3 SV=1
Length=968

 Score = 34.3 bits (77),  Expect = 4.9, Method: Compositional matrix adjust.
 Identities = 26/143 (18%), Positives = 57/143 (40%), Gaps = 16/143 (11%)

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
            E+ +  +  H+  + ++ C        LEQ   ++ G              H      ER
Sbjct  492  EWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREG--------IRAAVFHEGMSIIER  543

Query  555  KQNLERFKKGDV--RFLICTDVAARGIDIHGVPYVINVTL---PDEKQNYVHRIGRVGRA  609
             +    F + D   + L+C+++ + G +     +++   L   PD  +  + R+ R+G+A
Sbjct  544  DRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQA  603

Query  610  ERMGLAISLVATEKEKV---WYH  629
              + + +  +    + V   WYH
Sbjct  604  HDIQIHVPYLEKTAQSVLVRWYH  626


>sp|P60240|RAPA_ECOLI RNA polymerase-associated protein RapA OS=Escherichia 
coli (strain K12) OX=83333 GN=rapA PE=1 SV=2
Length=968

 Score = 34.3 bits (77),  Expect = 4.9, Method: Compositional matrix adjust.
 Identities = 26/143 (18%), Positives = 57/143 (40%), Gaps = 16/143 (11%)

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
            E+ +  +  H+  + ++ C        LEQ   ++ G              H      ER
Sbjct  492  EWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREG--------IRAAVFHEGMSIIER  543

Query  555  KQNLERFKKGDV--RFLICTDVAARGIDIHGVPYVINVTL---PDEKQNYVHRIGRVGRA  609
             +    F + D   + L+C+++ + G +     +++   L   PD  +  + R+ R+G+A
Sbjct  544  DRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQA  603

Query  610  ERMGLAISLVATEKEKV---WYH  629
              + + +  +    + V   WYH
Sbjct  604  HDIQIHVPYLEKTAQSVLVRWYH  626


>sp|B1IRB9|RAPA_ECOLC RNA polymerase-associated protein RapA OS=Escherichia 
coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 
/ NCIMB 8545 / WDCM 00012 / Crooks) OX=481805 GN=rapA PE=3 SV=1
Length=968

 Score = 34.3 bits (77),  Expect = 4.9, Method: Compositional matrix adjust.
 Identities = 26/143 (18%), Positives = 57/143 (40%), Gaps = 16/143 (11%)

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
            E+ +  +  H+  + ++ C        LEQ   ++ G              H      ER
Sbjct  492  EWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREG--------IRAAVFHEGMSIIER  543

Query  555  KQNLERFKKGDV--RFLICTDVAARGIDIHGVPYVINVTL---PDEKQNYVHRIGRVGRA  609
             +    F + D   + L+C+++ + G +     +++   L   PD  +  + R+ R+G+A
Sbjct  544  DRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQA  603

Query  610  ERMGLAISLVATEKEKV---WYH  629
              + + +  +    + V   WYH
Sbjct  604  HDIQIHVPYLEKTAQSVLVRWYH  626


>sp|C4ZPY3|RAPA_ECOBW RNA polymerase-associated protein RapA OS=Escherichia 
coli (strain K12 / MC4100 / BW2952) OX=595496 
GN=rapA PE=3 SV=1
Length=968

 Score = 34.3 bits (77),  Expect = 4.9, Method: Compositional matrix adjust.
 Identities = 26/143 (18%), Positives = 57/143 (40%), Gaps = 16/143 (11%)

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
            E+ +  +  H+  + ++ C        LEQ   ++ G              H      ER
Sbjct  492  EWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREG--------IRAAVFHEGMSIIER  543

Query  555  KQNLERFKKGDV--RFLICTDVAARGIDIHGVPYVINVTL---PDEKQNYVHRIGRVGRA  609
             +    F + D   + L+C+++ + G +     +++   L   PD  +  + R+ R+G+A
Sbjct  544  DRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQA  603

Query  610  ERMGLAISLVATEKEKV---WYH  629
              + + +  +    + V   WYH
Sbjct  604  HDIQIHVPYLEKTAQSVLVRWYH  626


>sp|P60241|RAPA_ECO57 RNA polymerase-associated protein RapA OS=Escherichia 
coli O157:H7 OX=83334 GN=rapA PE=3 SV=2
Length=968

 Score = 34.3 bits (77),  Expect = 4.9, Method: Compositional matrix adjust.
 Identities = 26/143 (18%), Positives = 57/143 (40%), Gaps = 16/143 (11%)

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
            E+ +  +  H+  + ++ C        LEQ   ++ G              H      ER
Sbjct  492  EWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREG--------IRAAVFHEGMSIIER  543

Query  555  KQNLERFKKGDV--RFLICTDVAARGIDIHGVPYVINVTL---PDEKQNYVHRIGRVGRA  609
             +    F + D   + L+C+++ + G +     +++   L   PD  +  + R+ R+G+A
Sbjct  544  DRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQA  603

Query  610  ERMGLAISLVATEKEKV---WYH  629
              + + +  +    + V   WYH
Sbjct  604  HDIQIHVPYLEKTAQSVLVRWYH  626


>sp|B7L4I0|RAPA_ECO55 RNA polymerase-associated protein RapA OS=Escherichia 
coli (strain 55989 / EAEC) OX=585055 GN=rapA PE=3 
SV=1
Length=968

 Score = 34.3 bits (77),  Expect = 4.9, Method: Compositional matrix adjust.
 Identities = 26/143 (18%), Positives = 57/143 (40%), Gaps = 16/143 (11%)

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
            E+ +  +  H+  + ++ C        LEQ   ++ G              H      ER
Sbjct  492  EWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREG--------IRAAVFHEGMSIIER  543

Query  555  KQNLERFKKGDV--RFLICTDVAARGIDIHGVPYVINVTL---PDEKQNYVHRIGRVGRA  609
             +    F + D   + L+C+++ + G +     +++   L   PD  +  + R+ R+G+A
Sbjct  544  DRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQA  603

Query  610  ERMGLAISLVATEKEKV---WYH  629
              + + +  +    + V   WYH
Sbjct  604  HDIQIHVPYLEKTAQSVLVRWYH  626


>sp|B7MAI2|RAPA_ECO45 RNA polymerase-associated protein RapA OS=Escherichia 
coli O45:K1 (strain S88 / ExPEC) OX=585035 GN=rapA 
PE=3 SV=1
Length=968

 Score = 34.3 bits (77),  Expect = 4.9, Method: Compositional matrix adjust.
 Identities = 26/143 (18%), Positives = 57/143 (40%), Gaps = 16/143 (11%)

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
            E+ +  +  H+  + ++ C        LEQ   ++ G              H      ER
Sbjct  492  EWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREG--------IRAAVFHEGMSIIER  543

Query  555  KQNLERFKKGDV--RFLICTDVAARGIDIHGVPYVINVTL---PDEKQNYVHRIGRVGRA  609
             +    F + D   + L+C+++ + G +     +++   L   PD  +  + R+ R+G+A
Sbjct  544  DRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQA  603

Query  610  ERMGLAISLVATEKEKV---WYH  629
              + + +  +    + V   WYH
Sbjct  604  HDIQIHVPYLEKTAQSVLVRWYH  626


>sp|A1A7A6|RAPA_ECOK1 RNA polymerase-associated protein RapA OS=Escherichia 
coli O1:K1 / APEC OX=405955 GN=rapA PE=3 SV=1
Length=968

 Score = 34.3 bits (77),  Expect = 4.9, Method: Compositional matrix adjust.
 Identities = 26/143 (18%), Positives = 57/143 (40%), Gaps = 16/143 (11%)

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
            E+ +  +  H+  + ++ C        LEQ   ++ G              H      ER
Sbjct  492  EWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREG--------IRAAVFHEGMSIIER  543

Query  555  KQNLERFKKGDV--RFLICTDVAARGIDIHGVPYVINVTL---PDEKQNYVHRIGRVGRA  609
             +    F + D   + L+C+++ + G +     +++   L   PD  +  + R+ R+G+A
Sbjct  544  DRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQA  603

Query  610  ERMGLAISLVATEKEKV---WYH  629
              + + +  +    + V   WYH
Sbjct  604  HDIQIHVPYLEKTAQSVLVRWYH  626


>sp|A7ZW09|RAPA_ECOHS RNA polymerase-associated protein RapA OS=Escherichia 
coli O9:H4 (strain HS) OX=331112 GN=rapA PE=3 
SV=1
Length=968

 Score = 34.3 bits (77),  Expect = 4.9, Method: Compositional matrix adjust.
 Identities = 26/143 (18%), Positives = 57/143 (40%), Gaps = 16/143 (11%)

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
            E+ +  +  H+  + ++ C        LEQ   ++ G              H      ER
Sbjct  492  EWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREG--------IRAAVFHEGMSIIER  543

Query  555  KQNLERFKKGDV--RFLICTDVAARGIDIHGVPYVINVTL---PDEKQNYVHRIGRVGRA  609
             +    F + D   + L+C+++ + G +     +++   L   PD  +  + R+ R+G+A
Sbjct  544  DRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQA  603

Query  610  ERMGLAISLVATEKEKV---WYH  629
              + + +  +    + V   WYH
Sbjct  604  HDIQIHVPYLEKTAQSVLVRWYH  626


>sp|B2U265|RAPA_SHIB3 RNA polymerase-associated protein RapA OS=Shigella 
boydii serotype 18 (strain CDC 3083-94 / BS512) OX=344609 
GN=rapA PE=3 SV=1
Length=968

 Score = 34.3 bits (77),  Expect = 5.0, Method: Compositional matrix adjust.
 Identities = 26/143 (18%), Positives = 57/143 (40%), Gaps = 16/143 (11%)

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
            E+ +  +  H+  + ++ C        LEQ   ++ G              H      ER
Sbjct  492  EWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREG--------IRAAVFHEGMSIIER  543

Query  555  KQNLERFKKGDV--RFLICTDVAARGIDIHGVPYVINVTL---PDEKQNYVHRIGRVGRA  609
             +    F + D   + L+C+++ + G +     +++   L   PD  +  + R+ R+G+A
Sbjct  544  DRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQA  603

Query  610  ERMGLAISLVATEKEKV---WYH  629
              + + +  +    + V   WYH
Sbjct  604  HDIQIHVPYLEKTAQSVLVRWYH  626


>sp|A6QPH9|ZMYM5_BOVIN Zinc finger MYM-type protein 5 OS=Bos taurus 
OX=9913 GN=ZMYM5 PE=2 SV=2
Length=673

 Score = 34.3 bits (77),  Expect = 5.1, Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 15/106 (14%)

Query  585  PYVINVTLPDEK------QNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGC  638
            P V N   P +       + Y  RI  +   E+   +  L +T K+ V+   C   G+G 
Sbjct  543  PQVRNFNFPKDSTGRKFSETYYTRI--LANGEKTTRSWLLYSTSKDSVFCLYCKLFGEG-  599

Query  639  YNTRLKEDGGCTIWYNEMQLLSEIEE---HLNCTI--SQVEPDIKV  679
               +LK + GC  W +   +LS+ EE   H+N ++  S+++ D+K 
Sbjct  600  -KNQLKNENGCRDWQHLSHILSKHEESEMHINNSVKYSKLKSDLKT  644


>sp|Q32K36|RAPA_SHIDS RNA polymerase-associated protein RapA OS=Shigella 
dysenteriae serotype 1 (strain Sd197) OX=300267 GN=rapA 
PE=3 SV=1
Length=968

 Score = 34.3 bits (77),  Expect = 5.1, Method: Compositional matrix adjust.
 Identities = 26/143 (18%), Positives = 57/143 (40%), Gaps = 16/143 (11%)

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
            E+ +  +  H+  + ++ C        LEQ   ++ G              H      ER
Sbjct  492  EWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREG--------IRAAVFHEGMSIIER  543

Query  555  KQNLERFKKGDV--RFLICTDVAARGIDIHGVPYVINVTL---PDEKQNYVHRIGRVGRA  609
             +    F + D   + L+C+++ + G +     +++   L   PD  +  + R+ R+G+A
Sbjct  544  DRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQA  603

Query  610  ERMGLAISLVATEKEKV---WYH  629
              + + +  +    + V   WYH
Sbjct  604  HDIQIHVPYLEKTAQSVLVRWYH  626


>sp|B7MNR6|RAPA_ECO81 RNA polymerase-associated protein RapA OS=Escherichia 
coli O81 (strain ED1a) OX=585397 GN=rapA PE=3 
SV=1
Length=968

 Score = 34.3 bits (77),  Expect = 5.1, Method: Compositional matrix adjust.
 Identities = 26/143 (18%), Positives = 57/143 (40%), Gaps = 16/143 (11%)

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
            E+ +  +  H+  + ++ C        LEQ   ++ G              H      ER
Sbjct  492  EWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREG--------IRAAVFHEGMSIIER  543

Query  555  KQNLERFKKGDV--RFLICTDVAARGIDIHGVPYVINVTL---PDEKQNYVHRIGRVGRA  609
             +    F + D   + L+C+++ + G +     +++   L   PD  +  + R+ R+G+A
Sbjct  544  DRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQA  603

Query  610  ERMGLAISLVATEKEKV---WYH  629
              + + +  +    + V   WYH
Sbjct  604  HDIQIHVPYLEKTAQSVLVRWYH  626


>sp|Q326H6|RAPA_SHIBS RNA polymerase-associated protein RapA OS=Shigella 
boydii serotype 4 (strain Sb227) OX=300268 GN=rapA 
PE=3 SV=1
Length=968

 Score = 34.3 bits (77),  Expect = 5.2, Method: Compositional matrix adjust.
 Identities = 26/143 (18%), Positives = 57/143 (40%), Gaps = 16/143 (11%)

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
            E+ +  +  H+  + ++ C        LEQ   ++ G              H      ER
Sbjct  492  EWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREG--------IRAAVFHEGMSIIER  543

Query  555  KQNLERFKKGDV--RFLICTDVAARGIDIHGVPYVINVTL---PDEKQNYVHRIGRVGRA  609
             +    F + D   + L+C+++ + G +     +++   L   PD  +  + R+ R+G+A
Sbjct  544  DRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQA  603

Query  610  ERMGLAISLVATEKEKV---WYH  629
              + + +  +    + V   WYH
Sbjct  604  HDIQIHVPYLEKTAQSVLVRWYH  626


>sp|Q8CX45|MIAB_SHEON tRNA-2-methylthio-N(6)-dimethylallyladenosine 
synthase OS=Shewanella oneidensis (strain MR-1) OX=211586 
GN=miaB PE=3 SV=1
Length=474

 Score = 34.3 bits (77),  Expect = 5.3, Method: Compositional matrix adjust.
 Identities = 26/109 (24%), Positives = 43/109 (39%), Gaps = 1/109 (1%)

Query  57   SIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREV  116
            S P I+      + + EG     +I  G S    + + PY RG   +  SD +  +  ++
Sbjct  129  SFPEIEKFDRLPEPRAEGPTAFVSIMEGCSKYCSFCVVPYTRGEEVSRPSDDIILEIAQL  188

Query  117  KEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGF  165
             E  G R    L +  + Y  + HD G+C         +   G D+  F
Sbjct  189  AE-QGVREVNLLGQNVNAYRGATHDGGICTFAELLRYVAAIDGIDRIRF  236


>sp|Q2URJ5|MPH1_ASPOR ATP-dependent DNA helicase mph1 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=mph1 
PE=3 SV=2
Length=1129

 Score = 34.3 bits (77),  Expect = 5.3, Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query  558  LERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAIS  617
            +++FKKG    ++ T +   G+DI  V  ++           + R+GR GR +R G  + 
Sbjct  748  VQKFKKGTYNTIVATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGR-KRAGNIVL  806

Query  618  LVATEKEKVWY  628
            L+   KE+  Y
Sbjct  807  LLMEGKEEESY  817


>sp|B6DMK2|MER3_ORYSJ ATP-dependent DNA helicase MER3 homolog 
OS=Oryza sativa subsp. japonica OX=39947 GN=MER3 PE=2 SV=1
Length=1205

 Score = 34.3 bits (77),  Expect = 5.8, Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 52/133 (39%), Gaps = 26/133 (20%)

Query  561  FKKGDVRFLICTDVAARGIDIHGVPYVINVT----------LPDEKQNYVHRIGRVGRAE  610
            F KGD++ L  T+  A GI++     VI  T          +  E+   +   GR GR  
Sbjct  363  FLKGDIQILCTTNTLAHGINLPAHTVVIKSTQFFNKEKGLYVEYERSMVLQMCGRAGRPP  422

Query  611  RMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTI  670
                   ++ T +E V  H+  +   GC                E QLL    EHLN  I
Sbjct  423  FDDTGTIIIMTRRETV--HLYENLLNGCEMV-------------ESQLLPCAVEHLNAEI  467

Query  671  SQVE-PDIKVPVD  682
             Q+   DI + ++
Sbjct  468  VQLTVSDITLAIE  480


>sp|Q2VF18|DCL2_CRYPA Dicer-like protein 2 OS=Cryphonectria parasitica 
OX=5116 GN=DCL-2 PE=3 SV=1
Length=1451

 Score = 34.3 bits (77),  Expect = 6.0, Method: Compositional matrix adjust.
 Identities = 22/72 (31%), Positives = 33/72 (46%), Gaps = 2/72 (3%)

Query  556  QNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLA  615
            Q LE F++G    L+ T V   GID+     +I    P+  + ++ R GR  R  +  L 
Sbjct  484  QCLEAFREGRKNMLVATSVLEEGIDVPACNLIICFDKPNNLRAFIQRRGR-ARMRQSHLY  542

Query  616  ISLVATEKEKVW  627
            +  V  E E  W
Sbjct  543  L-FVEDEAEADW  553


>sp|Q4WKB5|MPH1_ASPFU ATP-dependent DNA helicase mph1 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=mph1 PE=3 SV=1
Length=1101

 Score = 34.3 bits (77),  Expect = 6.1, Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query  558  LERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAIS  617
            +++FKKG    ++ T +   G+DI  V  ++           + R+GR GR +R G  + 
Sbjct  713  VQKFKKGTYNTIVATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGR-KRAGNIVL  771

Query  618  LVATEKEKVWY  628
            L+   KE+  Y
Sbjct  772  LLMQGKEEESY  782


>sp|B0XMV6|MPH1_ASPFC ATP-dependent DNA helicase mph1 OS=Aspergillus 
fumigatus (strain CBS 144.89 / FGSC A1163 / CEA10) OX=451804 
GN=mph1 PE=3 SV=1
Length=1101

 Score = 34.3 bits (77),  Expect = 6.1, Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query  558  LERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAIS  617
            +++FKKG    ++ T +   G+DI  V  ++           + R+GR GR +R G  + 
Sbjct  713  VQKFKKGTYNTIVATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGR-KRAGNIVL  771

Query  618  LVATEKEKVWY  628
            L+   KE+  Y
Sbjct  772  LLMQGKEEESY  782


>sp|A0LJZ1|PGK_SYNFM Phosphoglycerate kinase OS=Syntrophobacter 
fumaroxidans (strain DSM 10017 / MPOB) OX=335543 GN=pgk PE=3 
SV=1
Length=397

 Score = 33.9 bits (76),  Expect = 6.1, Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 34/67 (51%), Gaps = 9/67 (13%)

Query  295  SRELAE--QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDD  352
            +RE A   Q  N IK F+K +DNP     ++IGG     ++ VLE+ +        R+D 
Sbjct  162  ARECAAGYQLENEIKYFRKAMDNPARPMAMVIGGAKVSTKIGVLEHLIS-------RVDF  214

Query  353  LVSTGKL  359
            LV  G +
Sbjct  215  LVIGGAM  221


>sp|A1BI09|UVRB_CHLPD UvrABC system protein B OS=Chlorobium phaeobacteroides 
(strain DSM 266 / SMG 266 / 2430) OX=290317 GN=uvrB 
PE=3 SV=1
Length=685

 Score = 33.9 bits (76),  Expect = 6.2, Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 40/89 (45%), Gaps = 11/89 (12%)

Query  501  IKEH--KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNL  558
            I+ H  K  +A++   TK   ++L+ YF + G              LH + K  ER Q L
Sbjct  443  IRRHTAKGHKALVMTLTKRMSEDLDDYFKKVG---------IRSRYLHSEIKSLERIQIL  493

Query  559  ERFKKGDVRFLICTDVAARGIDIHGVPYV  587
               + GDV  L+  ++   G+D+  V  V
Sbjct  494  RELRAGDVEVLVGVNLLREGLDLPEVSLV  522


>sp|B4LMQ3|FBSP1_DROVI F-box/SPRY domain-containing protein 1 
OS=Drosophila virilis OX=7244 GN=Fsn PE=3 SV=1
Length=252

 Score = 33.5 bits (75),  Expect = 6.4, Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 21/138 (15%)

Query  123  RATKGLMKGKHYYEVSCHDQ--GLCRVGWSTMQASLD-------LGTDKFGFGFG-----  168
            R   G  +G+H +EV        +  +G ST +A+L        LG+D   +G+      
Sbjct  111  RGKIGFRQGRHAWEVIWEGPLGTVAVIGISTKEAALQCHGYVALLGSDDQSWGWNLVENH  170

Query  169  --GTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQA  226
                G    N    N   ++ + + I   LD D   + F KN + LG+AF   P  K   
Sbjct  171  LLHNGDMQGNYPLLNNAPKYQVGERIRVILDCDDNTLSFEKNYEFLGVAFRGLPDKK---  227

Query  227  LFP--ACVLKNAELKFNF  242
            L+P  + V  N E+   +
Sbjct  228  LYPTVSAVYGNTEVSMVY  245


>sp|Q290L5|FBSP1_DROPS F-box/SPRY domain-containing protein 1 
OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=Fsn PE=3 
SV=1
Length=255

 Score = 33.5 bits (75),  Expect = 6.4, Method: Compositional matrix adjust.
 Identities = 43/168 (26%), Positives = 64/168 (38%), Gaps = 22/168 (13%)

Query  94   NPYDRGSAFAIGSDGLCCQSREVKE-WHGCRATKGLMKGKHYYEVSCHDQ--GLCRVGWS  150
            NP D      I  +G       V +     RA  G   G+H +EV        +  +G S
Sbjct  84   NPSDCSRNVYIKPNGFTLHRNPVAQSTDAARAKIGFRHGRHAWEVIWEGPLGTVAVIGIS  143

Query  151  TMQASLD-------LGTDKFGFGFG-------GTGKKSHNKQFDNYGEEFTMHDTIGCYL  196
            T +A+L        LG+D   +G+          G         N   ++ + + I   L
Sbjct  144  TKEAALQCHGYVALLGSDDQSWGWNLVENHLLHNGDMQGGYPLLNNAPKYQVGERIRVIL  203

Query  197  DIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFP--ACVLKNAELKFNF  242
            D D   + F KN + LG+AF   P  K   LFP  + V  N E+   +
Sbjct  204  DCDDNTLSFEKNYEFLGVAFRGLPDKK---LFPTVSAVYGNTEVSMVY  248


>sp|B4GBN7|FBSP1_DROPE F-box/SPRY domain-containing protein 1 
OS=Drosophila persimilis OX=7234 GN=Fsn PE=3 SV=1
Length=255

 Score = 33.5 bits (75),  Expect = 6.4, Method: Compositional matrix adjust.
 Identities = 43/168 (26%), Positives = 64/168 (38%), Gaps = 22/168 (13%)

Query  94   NPYDRGSAFAIGSDGLCCQSREVKE-WHGCRATKGLMKGKHYYEVSCHDQ--GLCRVGWS  150
            NP D      I  +G       V +     RA  G   G+H +EV        +  +G S
Sbjct  84   NPSDCSRNVYIKPNGFTLHRNPVAQSTDAARAKIGFRHGRHAWEVIWEGPLGTVAVIGIS  143

Query  151  TMQASLD-------LGTDKFGFGFG-------GTGKKSHNKQFDNYGEEFTMHDTIGCYL  196
            T +A+L        LG+D   +G+          G         N   ++ + + I   L
Sbjct  144  TKEAALQCHGYVALLGSDDQSWGWNLVENHLLHNGDMQGGYPLLNNAPKYQVGERIRVIL  203

Query  197  DIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFP--ACVLKNAELKFNF  242
            D D   + F KN + LG+AF   P  K   LFP  + V  N E+   +
Sbjct  204  DCDDNTLSFEKNYEFLGVAFRGLPDKK---LFPTVSAVYGNTEVSMVY  248


>sp|Q07XC8|RAPA_SHEFN RNA polymerase-associated protein RapA OS=Shewanella 
frigidimarina (strain NCIMB 400) OX=318167 GN=rapA 
PE=3 SV=1
Length=968

 Score = 33.9 bits (76),  Expect = 7.0, Method: Compositional matrix adjust.
 Identities = 31/143 (22%), Positives = 57/143 (40%), Gaps = 16/143 (11%)

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
            ++ +  +K H+  + +I         +LE+    + G              H D    ER
Sbjct  493  DWLIEFLKSHRSKKVLIIASQAETALSLEEALRTREG--------IQATVFHEDMSIIER  544

Query  555  KQNLERF--KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR-AER  611
             +    F  ++G  + LIC+++ + G +     ++I   LP        RIGR+ R  ++
Sbjct  545  DKAGAYFAQEEGGAQALICSEIGSEGRNFQFASHLILFDLPLNPDLLEQRIGRLDRIGQQ  604

Query  612  MGLAISL-----VATEKEKVWYH  629
              + I L      A E+   WYH
Sbjct  605  NDIQIHLPYLRDTAQERLMRWYH  627


>sp|A1D4V5|MPH1_NEOFI ATP-dependent DNA helicase mph1 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=mph1 
PE=3 SV=1
Length=1111

 Score = 33.9 bits (76),  Expect = 7.2, Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query  558  LERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAIS  617
            +++FKKG    ++ T +   G+DI  V  ++           + R+GR GR +R G  + 
Sbjct  723  VQKFKKGTYNTIVATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGR-KRAGNIVL  781

Query  618  LVATEKEKVWY  628
            L+   KE+  Y
Sbjct  782  LLMQGKEEESY  792


>sp|Q19546|WRN_CAEEL ATP-dependent helicase wrn-1 OS=Caenorhabditis 
elegans OX=6239 GN=wrn-1 PE=3 SV=2
Length=1056

 Score = 33.9 bits (76),  Expect = 7.2, Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
             II+C+TK   D++     + G    +  H       H     ++R++    F +  +  
Sbjct  449  TIIYCQTKQMVDDVNCVLRRIGV---RSAH------YHAGLTKNQREKAHTDFMRDKITT  499

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
            ++ T     GID   V  VI+   P+  ++Y   IGR GR
Sbjct  500  IVATVAFGMGIDKPDVRNVIHYGCPNNIESYYQEIGRAGR  539


>sp|Q9CK01|RAPA_PASMU RNA polymerase-associated protein RapA OS=Pasteurella 
multocida (strain Pm70) OX=272843 GN=rapA PE=3 
SV=1
Length=967

 Score = 33.9 bits (76),  Expect = 7.4, Method: Compositional matrix adjust.
 Identities = 25/143 (17%), Positives = 57/143 (40%), Gaps = 16/143 (11%)

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
            E+ +  +K H+ ++ ++ CR       LEQ          ++         H      ER
Sbjct  491  EWLITFLKNHREEKVLVICRHANTAIQLEQAL--------REKEAIRAAVFHEKLSIVER  542

Query  555  KQNLERFKKGD--VRFLICTDVAARGIDIHGVPYVINVTLPDEK---QNYVHRIGRVGRA  609
             +    F + +   + L+ + + + G +     +++   LPD+    +  + R+ R+G+ 
Sbjct  543  DRAAAYFAQQEDGAQLLLSSSIGSEGRNFQFASHLVLFNLPDDPDLLEQCIGRLDRIGQR  602

Query  610  ERMGLAISLVATEKEKV---WYH  629
              + + +   A   + V   WYH
Sbjct  603  RDIQIHVPCFADTAQVVLARWYH  625


>sp|Q4WRW0|SSH4_ASPFU Protein ssh4 OS=Aspergillus fumigatus (strain 
ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 
GN=ssh4 PE=3 SV=2
Length=507

 Score = 33.5 bits (75),  Expect = 7.6, Method: Compositional matrix adjust.
 Identities = 31/125 (25%), Positives = 50/125 (40%), Gaps = 11/125 (9%)

Query  133  HYYEVSCHDQ---GLCRVGWSTMQASLDL--GTDKFGFGFGGTGKKSHNKQFDN--YGEE  185
            +Y+E   +++    L  +G +T    L    G  K    +  TG + +N+ F    YG  
Sbjct  223  YYWEAKIYEKPESTLISIGMTTKPYPLFRLPGFHKTSVAYLSTGHRRYNQPFSASPYGPA  282

Query  186  FTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNA-ELKFNFGE  244
                D +G       G + F++NGK L    ++    K Q  FP         +  NFG+
Sbjct  283  LAQGDVVGVGYRPRSGTIFFTRNGKKLE---DVVHGAKTQNFFPTVGANGPCTVHVNFGQ  339

Query  245  EEFKF  249
              F F
Sbjct  340  MGFVF  344


>sp|A8XT88|FBSP1_CAEBR F-box/SPRY domain-containing protein 1 
OS=Caenorhabditis briggsae OX=6238 GN=fsn-1 PE=3 SV=1
Length=332

 Score = 33.5 bits (75),  Expect = 7.7, Method: Compositional matrix adjust.
 Identities = 41/171 (24%), Positives = 73/171 (43%), Gaps = 24/171 (14%)

Query  91   WQMNPYDRGSAFAIGSDGLCCQSREVKE-WHGCRATKGLMKGKHYYEVSCHDQ--GLCRV  147
            W  N   R +   I ++G     + V +   G R  +G+ +G H ++++       +  V
Sbjct  160  WNTNDISRNNY--IRTNGFTVHRQPVAQSTDGVRGKRGVSQGVHAFDITWDGPLGTVAVV  217

Query  148  GWSTMQASLD-------LGTDKFGFGFGGTGKK-SHNK-QFDNYGE-----EFTMHDTIG  193
            G++T  A+L        LG+D   +G+        HN  Q   Y +     ++ + + I 
Sbjct  218  GFATKHAALHCVGYIALLGSDDQSWGWNLVDNVLMHNGVQLGVYPKMNNPPKYEVGEKIR  277

Query  194  CYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPA--CVLKNAELKFNF  242
              +D D     F +N + LG+AF   P ++   LFPA   V  N E+   +
Sbjct  278  LVIDCDMHVAYFERNSEFLGIAFSHIPPLR---LFPAVCAVYGNTEVTMVY  325


>sp|Q2T9X3|SPRY7_BOVIN SPRY domain-containing protein 7 OS=Bos 
taurus OX=9913 GN=SPRYD7 PE=2 SV=1
Length=196

 Score = 32.7 bits (73),  Expect = 8.0, Method: Compositional matrix adjust.
 Identities = 42/198 (21%), Positives = 77/198 (39%), Gaps = 22/198 (11%)

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            V+  L+  ++G  G   +K   +V    Q++    G+   I  +G     R +    GC 
Sbjct  5    VFCCLRCCRDGGTGHIPLKEMPAV----QLDTQHMGTDVVIVKNG-----RRICGTGGCL  55

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLD---LGTDKFGFGFGGTGKKSHNKQFD  180
            A+  L + K Y+E      G+  +G +T + +L+   LG D         G   HN +  
Sbjct  56   ASAPLHQNKSYFEFKIQSTGIWGIGVATQKVNLNQIPLGRDVHSLVMRNDGALYHNNEEK  115

Query  181  NYGEEFTMH---DTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAE  237
            N     ++    D +G  +  D   +    NGK++      P       ++P   + ++ 
Sbjct  116  NRLPANSLPQEGDVVG--ITYDHVELNVYLNGKNM----HCPASGIRGTVYPVVYVDDSA  169

Query  238  LKFNFGEEEFKFPPKDGF  255
            +  +    EF   P  GF
Sbjct  170  I-LDCQFSEFYHTPPPGF  186


>sp|F4IDQ6|NIH_ARATH DExH-box ATP-dependent RNA helicase DExH2 
OS=Arabidopsis thaliana OX=3702 GN=NIH PE=1 SV=1
Length=1576

 Score = 33.9 bits (76),  Expect = 8.1, Method: Compositional matrix adjust.
 Identities = 23/90 (26%), Positives = 36/90 (40%), Gaps = 18/90 (20%)

Query  539  QFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQ-  597
            +F  +CLH      E+K+   R  +G  + ++ T++A   + I  V YVI+     EK  
Sbjct  606  KFIILCLHSRVPAEEQKKVFNRPPRGCRKIVLATNIAESAVTIDDVVYVIDSGRMKEKSY  665

Query  598  -----------------NYVHRIGRVGRAE  610
                             N   R GR GR +
Sbjct  666  DPYNDVSTLQSSWVSKANAKQRAGRAGRCQ  695


>sp|Q9HE09|MFH2_SCHPO Putative ATP-dependent DNA helicase fml2 
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 
GN=fml2 PE=3 SV=1
Length=783

 Score = 33.5 bits (75),  Expect = 8.7, Method: Compositional matrix adjust.
 Identities = 16/75 (21%), Positives = 35/75 (47%), Gaps = 0/75 (0%)

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM  612
            ++K+ +++F+ G +  L+ T +   G+DI     +I           + R+GR GR +  
Sbjct  519  QQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSSPIRTIQRMGRTGRKKSG  578

Query  613  GLAISLVATEKEKVW  627
             + + L    ++  W
Sbjct  579  KVFVLLTEDCEDSKW  593


>sp|Q1DY43|MPH1_COCIM ATP-dependent DNA helicase MPH1 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=MPH1 PE=3 SV=1
Length=1110

 Score = 33.5 bits (75),  Expect = 8.9, Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (47%), Gaps = 8/90 (9%)

Query  553  ERKQNLE---RFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA  609
            ++K  LE   +FK G    ++ T +   G+DI  V  +I           + R+GR GR 
Sbjct  741  DQKTQLEVVGKFKTGTYNTIVATSIGEEGLDIGEVDLIICYDGHSSPIRMLQRMGRTGR-  799

Query  610  ERMGLAISLVATEKEKVWYHVCSSRGKGCY  639
            +R G  I L++  KE+  Y    S+ K  Y
Sbjct  800  KRAGNIILLLSKGKEEESY----SKAKDSY  825


>sp|P57381|MFD_BUCAI Transcription-repair-coupling factor OS=Buchnera 
aphidicola subsp. Acyrthosiphon pisum (strain APS) OX=107806 
GN=mfd PE=3 SV=1
Length=812

 Score = 33.5 bits (75),  Expect = 9.6, Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%)

Query  546  HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI-G  604
            HG  K  + K+ +  F       LICT +   G+DI     +I         + +H++ G
Sbjct  507  HGQMKNIDLKKVMNEFYNNKFNVLICTTIIESGVDIARANTIIIENSDHFGLSQLHQLRG  566

Query  605  RVGRAERMGLAISLV  619
            R+GR+     A+ LV
Sbjct  567  RIGRSNNQAYALLLV  581


>sp|C0Q5F4|RAPA_SALPC RNA polymerase-associated protein RapA OS=Salmonella 
paratyphi C (strain RKS4594) OX=476213 GN=rapA 
PE=3 SV=1
Length=968

 Score = 33.5 bits (75),  Expect = 9.9, Method: Compositional matrix adjust.
 Identities = 26/143 (18%), Positives = 56/143 (39%), Gaps = 16/143 (11%)

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
            E+ +  +  H+  + ++ C        LEQ   ++ G              H      ER
Sbjct  492  EWLMGYLTSHRSQKVLVICTKATTALQLEQVLREREG--------IRAAVFHEGMSIIER  543

Query  555  KQNLERFKKGDV--RFLICTDVAARGIDIHGVPYVINVTL---PDEKQNYVHRIGRVGRA  609
             +    F + D   + L+C+++ + G +      ++   L   PD  +  + R+ R+G+A
Sbjct  544  DRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQA  603

Query  610  ERMGLAISLVATEKEKV---WYH  629
              + + +  +    + V   WYH
Sbjct  604  HDIQIHVPYLEKTAQSVLVRWYH  626



Lambda      K        H        a         alpha
   0.318    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82703874496
Results from round 2


Query= sp|Q92499|DDX1_HUMAN ATP-dependent RNA helicase DDX1 OS=Homo sapiens
OX=9606 GN=DDX1 PE=1 SV=2

Length=740
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value
Sequences used in model and found again:

sp|Q92499|DDX1_HUMAN ATP-dependent RNA helicase DDX1 OS=Homo sapi...  992     0.0   
sp|Q4R7L5|DDX1_MACFA ATP-dependent RNA helicase DDX1 OS=Macaca fa...  991     0.0   
sp|Q5NVJ8|DDX1_PONAB ATP-dependent RNA helicase DDX1 OS=Pongo abe...  990     0.0   
sp|Q641Y8|DDX1_RAT ATP-dependent RNA helicase DDX1 OS=Rattus norv...  984     0.0   
sp|Q91VR5|DDX1_MOUSE ATP-dependent RNA helicase DDX1 OS=Mus muscu...  984     0.0   
sp|Q0IIK5|DDX1_BOVIN ATP-dependent RNA helicase DDX1 OS=Bos tauru...  981     0.0   
sp|Q90WU3|DDX1_CHICK ATP-dependent RNA helicase DDX1 OS=Gallus ga...  979     0.0   
sp|Q5XH91|DDX1_XENTR ATP-dependent RNA helicase DDX1 OS=Xenopus t...  947     0.0   
sp|A2VD92|DDX1_XENLA ATP-dependent RNA helicase DDX1 OS=Xenopus l...  946     0.0   
sp|Q9VNV3|DDX1_DROME ATP-dependent RNA helicase Ddx1 OS=Drosophil...  770     0.0   
sp|Q55CP6|DDX1_DICDI Probable ATP-dependent RNA helicase ddx1 OS=...  641     0.0   
sp|Q41741|IF4A_MAIZE Eukaryotic initiation factor 4A OS=Zea mays ...  362     1e-117
sp|Q2GWJ5|FAL1_CHAGB ATP-dependent RNA helicase FAL1 OS=Chaetomiu...  358     6e-116
sp|Q9P735|FAL1_NEUCR ATP-dependent RNA helicase fal-1 OS=Neurospo...  357     1e-115
sp|Q4IAA0|FAL1_GIBZE ATP-dependent RNA helicase FAL1 OS=Gibberell...  354     2e-114
sp|Q4P184|FAL1_USTMA ATP-dependent RNA helicase FAL1 OS=Ustilago ...  354     3e-114
sp|A4QU31|FAL1_PYRO7 ATP-dependent RNA helicase FAL1 OS=Pyricular...  353     7e-114
sp|Q4WEB4|FAL1_ASPFU ATP-dependent RNA helicase fal1 OS=Aspergill...  351     3e-113
sp|A1C595|FAL1_ASPCL ATP-dependent RNA helicase fal1 OS=Aspergill...  349     1e-112
sp|Q5AUL4|FAL1_EMENI ATP-dependent RNA helicase fal1 OS=Emericell...  349     2e-112
sp|A1D071|FAL1_NEOFI ATP-dependent RNA helicase fal1 OS=Neosartor...  349     2e-112
sp|A6QSQ0|FAL1_AJECN ATP-dependent RNA helicase FAL1 OS=Ajellomyc...  350     2e-112
sp|Q2UAK1|FAL1_ASPOR ATP-dependent RNA helicase fal1 OS=Aspergill...  348     3e-112
sp|Q0CAS8|FAL1_ASPTN ATP-dependent RNA helicase fal1 OS=Aspergill...  347     7e-112
sp|Q1DTB3|FAL1_COCIM ATP-dependent RNA helicase FAL1 OS=Coccidioi...  347     8e-112
sp|A5AAE5|FAL1_ASPNC ATP-dependent RNA helicase fal1 OS=Aspergill...  347     9e-112
sp|P41382|IF410_TOBAC Eukaryotic initiation factor 4A-10 OS=Nicot...  347     1e-111
sp|Q40467|IF414_TOBAC Eukaryotic initiation factor 4A-14 OS=Nicot...  347     2e-111
sp|Q40468|IF415_TOBAC Eukaryotic initiation factor 4A-15 OS=Nicot...  347     2e-111
sp|A7EM88|FAL1_SCLS1 ATP-dependent RNA helicase fal1 OS=Sclerotin...  345     5e-111
sp|A6S4N4|FAL1_BOTFB ATP-dependent RNA helicase fal1 OS=Botryotin...  345     6e-111
sp|P41381|IF4A8_TOBAC Eukaryotic initiation factor 4A-8 OS=Nicoti...  345     7e-111
sp|P35683|IF4A1_ORYSJ Eukaryotic initiation factor 4A-1 OS=Oryza ...  345     1e-110
sp|P41376|IF4A1_ARATH Eukaryotic initiation factor 4A-1 OS=Arabid...  344     1e-110
sp|Q24731|DDX1_DROVI ATP-dependent RNA helicase Ddx1 (Fragment) O...  344     1e-110
sp|Q40470|IF4A7_TOBAC Eukaryotic initiation factor 4A-7 OS=Nicoti...  344     1e-110
sp|Q40471|IF4A9_TOBAC Eukaryotic initiation factor 4A-9 OS=Nicoti...  344     2e-110
sp|Q6Z2Z4|IF4A3_ORYSJ Eukaryotic initiation factor 4A-3 OS=Oryza ...  344     3e-110
sp|P41378|IF4A_WHEAT Eukaryotic initiation factor 4A OS=Triticum ...  343     5e-110
sp|Q40465|IF411_TOBAC Eukaryotic initiation factor 4A-11 OS=Nicot...  342     8e-110
sp|P41379|IF4A2_NICPL Eukaryotic initiation factor 4A-2 OS=Nicoti...  342     2e-109
sp|Q10055|FAL1_SCHPO ATP-dependent RNA helicase fal1 OS=Schizosac...  341     2e-109
sp|P0CQ72|FAL1_CRYNJ ATP-dependent RNA helicase FAL1 OS=Cryptococ...  340     6e-109
sp|P0CQ73|FAL1_CRYNB ATP-dependent RNA helicase FAL1 OS=Cryptococ...  340     6e-109
sp|Q9VHS8|IF4A3_DROME Eukaryotic initiation factor 4A-III OS=Dros...  339     9e-109
sp|Q91VC3|IF4A3_MOUSE Eukaryotic initiation factor 4A-III OS=Mus ...  339     2e-108
sp|Q3B8Q2|IF4A3_RAT Eukaryotic initiation factor 4A-III OS=Rattus...  338     3e-108
sp|A6M931|IF4A3_PIG Eukaryotic initiation factor 4A-III OS=Sus sc...  338     3e-108
sp|Q2NL22|IF4A3_BOVIN Eukaryotic initiation factor 4A-III OS=Bos ...  338     3e-108
sp|P38919|IF4A3_HUMAN Eukaryotic initiation factor 4A-III OS=Homo...  338     4e-108
sp|B5FZY7|IF4A3_TAEGU Eukaryotic initiation factor 4A-III OS=Taen...  338     6e-108
sp|Q5ZM36|IF4A3_CHICK Eukaryotic initiation factor 4A-III OS=Gall...  337     6e-108
sp|Q9CAI7|IF4A3_ARATH Eukaryotic initiation factor 4A-3 OS=Arabid...  337     2e-107
sp|P27639|IF4A_CAEEL Eukaryotic initiation factor 4A OS=Caenorhab...  336     2e-107
sp|B7ZTW1|IF4A3_XENTR Eukaryotic initiation factor 4A-III OS=Xeno...  336     2e-107
sp|B5DG42|IF4A3_SALSA Eukaryotic initiation factor 4A-III OS=Salm...  335     3e-107
sp|Q7ZVA6|IF4A3_DANRE Eukaryotic initiation factor 4A-III OS=Dani...  335     4e-107
sp|Q4R3Q1|IF4A3_MACFA Eukaryotic initiation factor 4A-III OS=Maca...  334     1e-106
sp|Q10I26|IF43B_ORYSJ Eukaryotic initiation factor 4A-III homolog...  334     1e-106
sp|Q6FLF3|DBP2_CANGA ATP-dependent RNA helicase DBP2 OS=Candida g...  339     1e-106
sp|P41377|IF4A2_ARATH Eukaryotic initiation factor 4A-2 OS=Arabid...  334     1e-106
sp|Q6C347|FAL1_YARLI ATP-dependent RNA helicase FAL1 OS=Yarrowia ...  334     2e-106
sp|Q5U526|I4A3A_XENLA Eukaryotic initiation factor 4A-III-A OS=Xe...  334     2e-106
sp|O42226|I4A3B_XENLA Eukaryotic initiation factor 4A-III-B OS=Xe...  334     3e-106
sp|Q5VNM3|IF43A_ORYSJ Eukaryotic initiation factor 4A-III homolog...  333     3e-106
sp|A5DIP0|DHH1_PICGU ATP-dependent RNA helicase DHH1 OS=Meyerozym...  337     4e-106
sp|O02494|IF4A_CRYPV Eukaryotic initiation factor 4A OS=Cryptospo...  332     6e-106
sp|Q12099|FAL1_YEAST ATP-dependent RNA helicase FAL1 OS=Saccharom...  330     2e-105
sp|A6ZXY5|FAL1_YEAS7 ATP-dependent RNA helicase FAL1 OS=Saccharom...  330     2e-105
sp|Q6CIV2|DBP2_KLULA ATP-dependent RNA helicase DBP2 OS=Kluyverom...  335     3e-105
sp|Q6CX73|FAL1_KLULA ATP-dependent RNA helicase FAL1 OS=Kluyverom...  330     3e-105
sp|A6ZRX0|DBP2_YEAS7 ATP-dependent RNA helicase DBP2 OS=Saccharom...  334     6e-105
sp|Q55D61|IF4A_DICDI Eukaryotic initiation factor 4A OS=Dictyoste...  329     7e-105
sp|P24783|DBP2_YEAST ATP-dependent RNA helicase DBP2 OS=Saccharom...  334     7e-105
sp|Q755N4|DBP2_EREGS ATP-dependent RNA helicase DBP2 OS=Eremothec...  333     3e-104
sp|Q94A52|RH2_ARATH Eukaryotic initiation factor 4A-III homolog O...  328     4e-104
sp|Q5B0J9|DBP2_EMENI ATP-dependent RNA helicase dbp2 OS=Emericell...  332     6e-104
sp|Q6BY27|DBP2_DEBHA ATP-dependent RNA helicase DBP2 OS=Debaryomy...  331     7e-104
sp|P41380|IF4A3_NICPL Eukaryotic initiation factor 4A-3 OS=Nicoti...  326     9e-104
sp|A5DE68|FAL1_PICGU ATP-dependent RNA helicase FAL1 OS=Meyerozym...  326     9e-104
sp|P24782|DBP2_SCHPO ATP-dependent RNA helicase dbp2 OS=Schizosac...  331     1e-103
sp|Q4X195|DBP2_ASPFU ATP-dependent RNA helicase dbp2 OS=Aspergill...  331     1e-103
sp|Q6C4D4|DBP2_YARLI ATP-dependent RNA helicase DBP2 OS=Yarrowia ...  330     3e-103
sp|A1DGZ7|DBP2_NEOFI ATP-dependent RNA helicase dbp2 OS=Neosartor...  330     3e-103
sp|G0SFM2|DBP2_CHATD ATP-dependent RNA helicase DBP2 OS=Chaetomiu...  330     4e-103
sp|Q4PHU9|DBP2_USTMA ATP-dependent RNA helicase DBP2 OS=Ustilago ...  330     5e-103
sp|Q59LU0|DBP2_CANAL ATP-dependent RNA helicase DBP2 OS=Candida a...  330     5e-103
sp|Q2U070|DBP2_ASPOR ATP-dependent RNA helicase dbp2 OS=Aspergill...  329     6e-103
sp|A5DL80|DBP2_PICGU ATP-dependent RNA helicase DBP2 OS=Meyerozym...  329     7e-103
sp|A7E449|DBP2_SCLS1 ATP-dependent RNA helicase dbp2 OS=Sclerotin...  329     1e-102
sp|A6SFW7|DBP2_BOTFB ATP-dependent RNA helicase dbp2 OS=Botryotin...  327     1e-102
sp|A6RGE3|DBP2_AJECN ATP-dependent RNA helicase DBP2 OS=Ajellomyc...  328     2e-102
sp|A2QC74|DBP2_ASPNC ATP-dependent RNA helicase dbp2 OS=Aspergill...  328     2e-102
sp|Q8Y8N0|CSHA_LISMO ATP-dependent RNA helicase CshA OS=Listeria ...  327     2e-102
sp|Q0DB53|RH52A_ORYSJ DEAD-box ATP-dependent RNA helicase 52A OS=...  329     3e-102
sp|Q1DP69|DBP2_COCIM ATP-dependent RNA helicase DBP2 OS=Coccidioi...  327     3e-102
sp|Q501J6|DDX17_MOUSE Probable ATP-dependent RNA helicase DDX17 O...  330     3e-102
sp|Q2HBE7|DED1_CHAGB ATP-dependent RNA helicase DED1 OS=Chaetomiu...  332     3e-102
sp|Q5VQL1|RH14_ORYSJ DEAD-box ATP-dependent RNA helicase 14 OS=Or...  332     3e-102
sp|Q9P6U9|DED1_NEUCR ATP-dependent RNA helicase ded1 OS=Neurospor...  331     4e-102
sp|Q7SBC6|DBP2_NEUCR ATP-dependent RNA helicase dbp2 OS=Neurospor...  327     5e-102
sp|Q6BT27|FAL1_DEBHA ATP-dependent RNA helicase FAL1 OS=Debaryomy...  322     5e-102
sp|A1C6C4|DBP2_ASPCL ATP-dependent RNA helicase dbp2 OS=Aspergill...  327     6e-102
sp|Q92841|DDX17_HUMAN Probable ATP-dependent RNA helicase DDX17 O...  331     1e-101
sp|A7EJY3|DED1_SCLS1 ATP-dependent RNA helicase ded1 OS=Sclerotin...  330     1e-101
sp|P42305|DBPA_BACSU ATP-dependent RNA helicase DbpA OS=Bacillus ...  323     2e-101
sp|A6SEH9|DED1_BOTFB ATP-dependent RNA helicase ded1 OS=Botryotin...  330     2e-101
sp|A4QSS5|DBP2_PYRO7 ATP-dependent RNA helicase DBP2 OS=Pyricular...  325     2e-101
sp|P34580|DDX47_CAEEL Putative ATP-dependent RNA helicase T26G10....  323     2e-101
sp|Q6CLR3|DED1_KLULA ATP-dependent RNA helicase DED1 OS=Kluyverom...  327     2e-101
sp|Q5L3G9|CSHA_GEOKA DEAD-box ATP-dependent RNA helicase CshA OS=...  322     3e-101
sp|A3GFV3|FAL1_PICST ATP-dependent RNA helicase FAL1 OS=Scheffers...  320     3e-101
sp|Q2H720|DBP2_CHAGB ATP-dependent RNA helicase DBP2 OS=Chaetomiu...  325     5e-101
sp|Q8TFK8|DED1_CANGA ATP-dependent RNA helicase DED1 OS=Candida g...  326     5e-101
sp|Q4IF76|DBP2_GIBZE ATP-dependent RNA helicase DBP2 OS=Gibberell...  324     6e-101
sp|Q4I7K4|DED1_GIBZE ATP-dependent RNA helicase DED1 OS=Gibberell...  328     6e-101
sp|Q1DJF0|DED1_COCIM ATP-dependent RNA helicase DED1 OS=Coccidioi...  327     8e-101
sp|Q2UGK3|DED1_ASPOR ATP-dependent RNA helicase ded1 OS=Aspergill...  327     9e-101
sp|A4RHF1|DED1_PYRO7 ATP-dependent RNA helicase DED1 OS=Pyricular...  327     1e-100
sp|Q5QMN3|RH20_ORYSJ DEAD-box ATP-dependent RNA helicase 20 OS=Or...  321     2e-100
sp|Q9C718|RH20_ARATH DEAD-box ATP-dependent RNA helicase 20 OS=Ar...  321     2e-100
sp|Q8W4R3|RH30_ARATH DEAD-box ATP-dependent RNA helicase 30 OS=Ar...  324     2e-100
sp|P24346|DDX3_XENLA Putative ATP-dependent RNA helicase an3 OS=X...  327     3e-100
sp|A7EML8|RRP3_SCLS1 ATP-dependent rRNA helicase rrp3 OS=Scleroti...  320     3e-100
sp|Q755W0|FAL1_EREGS ATP-dependent RNA helicase FAL1 OS=Eremothec...  317     4e-100
sp|P24784|DBP1_YEAST ATP-dependent RNA helicase DBP1 OS=Saccharom...  324     4e-100
sp|A6ZWD3|DBP1_YEAS7 ATP-dependent RNA helicase DBP1 OS=Saccharom...  324     4e-100
sp|A5DWJ1|FAL1_LODEL ATP-dependent RNA helicase FAL1 OS=Lodderomy...  317     4e-100
sp|P06634|DED1_YEAST ATP-dependent RNA helicase DED1 OS=Saccharom...  324     5e-100
sp|A6ZP47|DED1_YEAS7 ATP-dependent RNA helicase DED1 OS=Saccharom...  324     5e-100
sp|Q75B50|DED1_EREGS ATP-dependent RNA helicase DED1 OS=Eremothec...  324     5e-100
sp|Q9LYJ9|RH46_ARATH DEAD-box ATP-dependent RNA helicase 46 OS=Ar...  325     5e-100
sp|Q0UWA6|DED1_PHANO ATP-dependent RNA helicase DED1 OS=Phaeospha...  326     7e-100
sp|Q61656|DDX5_MOUSE Probable ATP-dependent RNA helicase DDX5 OS=...  323     9e-100
sp|Q9Z6C9|CSHA_LIMRT ATP-dependent RNA helicase CshA OS=Limosilac...  319     1e-99 
sp|P17844|DDX5_HUMAN Probable ATP-dependent RNA helicase DDX5 OS=...  323     1e-99 
sp|A2QI25|DED1_ASPNC ATP-dependent RNA helicase ded1 OS=Aspergill...  325     1e-99 
sp|Q5B5E7|RRP3_EMENI ATP-dependent rRNA helicase rrp3 OS=Emericel...  318     1e-99 
sp|P0CQ76|DBP2_CRYNJ ATP-dependent RNA helicase DBP2-A OS=Cryptoc...  320     1e-99 
sp|P0CQ77|DBP2_CRYNB ATP-dependent RNA helicase DBP2-A OS=Cryptoc...  320     1e-99 
sp|Q5R4I9|DDX5_PONAB Probable ATP-dependent RNA helicase DDX5 OS=...  323     1e-99 
sp|A1CXK7|DED1_NEOFI ATP-dependent RNA helicase ded1 OS=Neosartor...  325     1e-99 
sp|P96614|CSHA_BACSU DEAD-box ATP-dependent RNA helicase CshA OS=...  319     1e-99 
sp|Q4WP13|DED1_ASPFU ATP-dependent RNA helicase ded1 OS=Aspergill...  324     1e-99 
sp|Q9C8J1|RH34_ARATH DEAD-box ATP-dependent RNA helicase 34 OS=Ar...  315     1e-99 
sp|A1D405|RRP3_NEOFI ATP-dependent rRNA helicase rrp3 OS=Neosarto...  318     1e-99 
sp|A1CH78|DED1_ASPCL ATP-dependent RNA helicase ded1 OS=Aspergill...  324     1e-99 
sp|Q9CWX9|DDX47_MOUSE Probable ATP-dependent RNA helicase DDX47 O...  317     1e-99 
sp|Q6FP38|DBP1_CANGA ATP-dependent RNA helicase DBP1 OS=Candida g...  322     2e-99 
sp|P46942|DB10_NICSY ATP-dependent RNA helicase-like protein DB10...  322     2e-99 
sp|A5DQS0|DED1_PICGU ATP-dependent RNA helicase DED1 OS=Meyerozym...  323     2e-99 
sp|Q0CLJ6|DED1_ASPTN ATP-dependent RNA helicase ded1 OS=Aspergill...  324     3e-99 
sp|Q6CH58|RRP3_YARLI ATP-dependent rRNA helicase RRP3 OS=Yarrowia...  317     3e-99 
sp|Q4WJE9|RRP3_ASPFU ATP-dependent rRNA helicase rrp3 OS=Aspergil...  317     3e-99 
sp|A7TKR8|DED1_VANPO ATP-dependent RNA helicase DED1 OS=Vanderwal...  322     3e-99 
sp|A3LQ01|DED1_PICST ATP-dependent RNA helicase DED1 OS=Scheffers...  322     4e-99 
sp|Q4R6M5|DDX5_MACFA Probable ATP-dependent RNA helicase DDX5 OS=...  321     4e-99 
sp|A5DZE6|DED1_LODEL ATP-dependent RNA helicase DED1 OS=Lodderomy...  323     4e-99 
sp|Q5A9Z6|FAL1_CANAL ATP-dependent RNA helicase FAL1 OS=Candida a...  314     4e-99 
sp|P0A4D8|CSHA_STRR6 DEAD-box ATP-dependent RNA helicase CshA OS=...  318     4e-99 
sp|P0A4D7|CSHA_STRPN DEAD-box ATP-dependent RNA helicase CshA OS=...  318     4e-99 
sp|A1CR32|RRP3_ASPCL ATP-dependent rRNA helicase rrp3 OS=Aspergil...  317     4e-99 
sp|Q0UAT0|FAL1_PHANO ATP-dependent RNA helicase FAL1 OS=Phaeospha...  313     5e-99 
sp|Q1E1N5|RRP3_COCIM ATP-dependent rRNA helicase RRP3 OS=Coccidio...  316     6e-99 
sp|Q5JKF2|RH40_ORYSJ DEAD-box ATP-dependent RNA helicase 40 OS=Or...  326     7e-99 
sp|A7TEF4|FAL1_VANPO ATP-dependent RNA helicase FAL1 OS=Vanderwal...  313     7e-99 
sp|Q6FJG1|FAL1_CANGA ATP-dependent RNA helicase FAL1 OS=Candida g...  313     7e-99 
sp|Q2R1M8|RH52C_ORYSJ DEAD-box ATP-dependent RNA helicase 52C OS=...  321     8e-99 
sp|P0CR00|RRP3_CRYNJ ATP-dependent rRNA helicase RRP3 OS=Cryptoco...  316     8e-99 
sp|P0CR01|RRP3_CRYNB ATP-dependent rRNA helicase RRP3 OS=Cryptoco...  316     8e-99 
sp|C8V8H4|DED1_EMENI ATP-dependent RNA helicase ded1 OS=Emericell...  322     9e-99 
sp|Q2H1Q8|RRP3_CHAGB ATP-dependent rRNA helicase RRP3 OS=Chaetomi...  317     9e-99 
sp|Q814I2|DBPA_BACCR ATP-dependent RNA helicase DbpA OS=Bacillus ...  316     1e-98 
sp|Q81IT9|CSHA_BACCR DEAD-box ATP-dependent RNA helicase CshA OS=...  317     2e-98 
sp|Q8H136|RH14_ARATH DEAD-box ATP-dependent RNA helicase 14 OS=Ar...  320     2e-98 
sp|Q6HPE6|CSHA_BACHK DEAD-box ATP-dependent RNA helicase CshA OS=...  317     2e-98 
sp|Q81VG0|CSHA_BACAN DEAD-box ATP-dependent RNA helicase CshA OS=...  317     2e-98 
sp|A0R8U6|CSHA_BACAH DEAD-box ATP-dependent RNA helicase CshA OS=...  317     2e-98 
sp|Q73EU1|CSHA_BACC1 DEAD-box ATP-dependent RNA helicase CshA OS=...  317     2e-98 
sp|Q9VHP0|DDX3_DROME ATP-dependent RNA helicase bel OS=Drosophila...  324     2e-98 
sp|Q63GX5|CSHA_BACCZ DEAD-box ATP-dependent RNA helicase CshA OS=...  317     2e-98 
sp|Q65N62|CSHA_BACLD DEAD-box ATP-dependent RNA helicase CshA OS=...  315     3e-98 
sp|O00571|DDX3X_HUMAN ATP-dependent RNA helicase DDX3X OS=Homo sa...  320     3e-98 
sp|Q81DF9|CSHE_BACCR DEAD-box ATP-dependent RNA helicase CshE OS=...  314     3e-98 
sp|Q6CT85|RRP3_KLULA ATP-dependent rRNA helicase RRP3 OS=Kluyvero...  315     4e-98 
sp|Q29S22|DDX47_BOVIN Probable ATP-dependent RNA helicase DDX47 O...  313     4e-98 
sp|Q9H0S4|DDX47_HUMAN Probable ATP-dependent RNA helicase DDX47 O...  313     4e-98 
sp|Q8LA13|RH11_ARATH DEAD-box ATP-dependent RNA helicase 11 OS=Ar...  318     5e-98 
sp|Q5A4E2|DED1_CANAL ATP-dependent RNA helicase DED1 OS=Candida a...  320     5e-98 
sp|A5A6J2|DDX5_PANTR Probable ATP-dependent RNA helicase DDX5 OS=...  318     6e-98 
sp|A6QRQ7|RRP3_AJECN ATP-dependent rRNA helicase RRP3 OS=Ajellomy...  314     6e-98 
sp|P16381|DDX3L_MOUSE Putative ATP-dependent RNA helicase Pl10 OS...  319     8e-98 
sp|A4RGD1|RRP3_PYRO7 ATP-dependent rRNA helicase RRP3 OS=Pyricula...  315     1e-97 
sp|Q9P6N8|RRP3_SCHPO ATP-dependent rRNA helicase rrp3 OS=Schizosa...  313     1e-97 
sp|Q62167|DDX3X_MOUSE ATP-dependent RNA helicase DDX3X OS=Mus mus...  319     1e-97 
sp|Q5RF43|DDX3Y_PONAB ATP-dependent RNA helicase DDX3Y OS=Pongo a...  318     1e-97 
sp|Q2UNB7|RRP3_ASPOR ATP-dependent rRNA helicase rrp3 OS=Aspergil...  313     1e-97 
sp|O15523|DDX3Y_HUMAN ATP-dependent RNA helicase DDX3Y OS=Homo sa...  318     2e-97 
sp|Q4P3U9|RRP3_USTMA ATP-dependent rRNA helicase RRP3 OS=Ustilago...  315     2e-97 
sp|A2RB17|RRP3_ASPNC ATP-dependent rRNA helicase rrp3 OS=Aspergil...  312     2e-97 
sp|Q5N7W4|RH30_ORYSJ DEAD-box ATP-dependent RNA helicase 30 OS=Or...  318     3e-97 
sp|Q6GVM6|DDX3Y_PANTR ATP-dependent RNA helicase DDX3Y OS=Pan tro...  318     3e-97 
sp|Q62095|DDX3Y_MOUSE ATP-dependent RNA helicase DDX3Y OS=Mus mus...  317     4e-97 
sp|Q9M2F9|RH52_ARATH DEAD-box ATP-dependent RNA helicase 52 OS=Ar...  317     4e-97 
sp|Q7RY59|RRP3_NEUCR ATP-dependent rRNA helicase rrp-3 OS=Neurosp...  313     4e-97 
sp|Q6BQ61|RRP3_DEBHA ATP-dependent rRNA helicase RRP3 OS=Debaryom...  312     4e-97 
sp|Q6FNK8|RRP3_CANGA ATP-dependent rRNA helicase RRP3 OS=Candida ...  312     5e-97 
sp|A7TS37|RRP3_VANPO ATP-dependent rRNA helicase RRP3 OS=Vanderwa...  312     6e-97 
sp|A6R3L3|DED1_AJECN ATP-dependent RNA helicase DED1 OS=Ajellomyc...  318     6e-97 
sp|Q6Z4K6|RH52B_ORYSJ DEAD-box ATP-dependent RNA helicase 52B OS=...  316     7e-97 
sp|Q6BU54|DED1_DEBHA ATP-dependent RNA helicase DED1 OS=Debaryomy...  315     1e-96 
sp|P25888|RHLE_ECOLI ATP-dependent RNA helicase RhlE OS=Escherich...  310     1e-96 
sp|A6RW56|RRP3_BOTFB ATP-dependent rRNA helicase rrp3 OS=Botryoti...  310     1e-96 
sp|Q9SQV1|RH40_ARATH DEAD-box ATP-dependent RNA helicase 40 OS=Ar...  325     2e-96 
sp|O13370|DED1_SCHPO ATP-dependent RNA helicase ded1 OS=Schizosac...  315     2e-96 
sp|Q75HJ0|RH37_ORYSJ DEAD-box ATP-dependent RNA helicase 37 OS=Or...  315     3e-96 
sp|Q6BJX6|DHH1_DEBHA ATP-dependent RNA helicase DHH1 OS=Debaryomy...  310     3e-96 
sp|Q84W89|RH37_ARATH DEAD-box ATP-dependent RNA helicase 37 OS=Ar...  314     4e-96 
sp|Q0CIQ3|RRP3_ASPTN ATP-dependent rRNA helicase rrp3 OS=Aspergil...  308     5e-96 
sp|Q0UU86|IF4A_PHANO ATP-dependent RNA helicase eIF4A OS=Phaeosph...  305     7e-96 
sp|A6ZSX1|RRP3_YEAS7 ATP-dependent rRNA helicase RRP3 OS=Saccharo...  309     1e-95 
sp|A3LWX3|DHH1_PICST ATP-dependent RNA helicase DHH1 OS=Scheffers...  309     1e-95 
sp|Q75EW9|RRP3_EREGS ATP-dependent rRNA helicase RRP3 OS=Eremothe...  308     1e-95 
sp|P38712|RRP3_YEAST ATP-dependent rRNA helicase RRP3 OS=Saccharo...  308     2e-95 
sp|Q2YUH3|CSHA_STAAB DEAD-box ATP-dependent RNA helicase CshA OS=...  308     2e-95 
sp|Q55804|CRHR_SYNY3 RNA helicase CrhR OS=Synechocystis sp. (stra...  307     2e-95 
sp|A0A1D6LAB7|RH3B_MAIZE DEAD-box ATP-dependent RNA helicase 3B, ...  315     3e-95 
sp|Q5ACU6|RRP3_CANAL ATP-dependent rRNA helicase RRP3 OS=Candida ...  308     3e-95 
sp|A0A1D6GDY8|RH3A_MAIZE DEAD-box ATP-dependent RNA helicase 3A, ...  314     4e-95 
sp|P9WH05|DEAD_MYCTU ATP-dependent RNA helicase DeaD OS=Mycobacte...  309     4e-95 
sp|P9WH04|DEAD_MYCTO ATP-dependent RNA helicase DeaD OS=Mycobacte...  309     4e-95 
sp|Q0DM51|RH3_ORYSJ DEAD-box ATP-dependent RNA helicase 3, chloro...  315     4e-95 
sp|Q8SRB2|DBP2_ENCCU ATP-dependent RNA helicase DBP2 OS=Encephali...  307     6e-95 
sp|Q7A0D2|CSHA_STAAW DEAD-box ATP-dependent RNA helicase CshA OS=...  307     6e-95 
sp|Q6G7M9|CSHA_STAAS DEAD-box ATP-dependent RNA helicase CshA OS=...  307     6e-95 
sp|Q7A4G0|CSHA_STAAN DEAD-box ATP-dependent RNA helicase CshA OS=...  307     6e-95 
sp|Q99SH6|CSHA_STAAM DEAD-box ATP-dependent RNA helicase CshA OS=...  307     6e-95 
sp|Q5HEB9|CSHA_STAAC DEAD-box ATP-dependent RNA helicase CshA OS=...  307     6e-95 
sp|Q2FWH5|CSHA_STAA8 DEAD-box ATP-dependent RNA helicase CshA OS=...  307     6e-95 
sp|Q2FF45|CSHA_STAA3 DEAD-box ATP-dependent RNA helicase CshA OS=...  307     6e-95 
sp|Q9VIF6|DDX47_DROME ATP-dependent RNA helicase DDX47 OS=Drosoph...  307     7e-95 
sp|Q8K9H6|DEAD_BUCAP ATP-dependent RNA helicase DeaD OS=Buchnera ...  310     8e-95 
sp|Q6GEZ3|CSHA_STAAR DEAD-box ATP-dependent RNA helicase CshA OS=...  307     9e-95 
sp|Q6CB69|DED1_YARLI ATP-dependent RNA helicase DED1 OS=Yarrowia ...  310     9e-95 
sp|Q4IFI0|RRP3_GIBZE ATP-dependent rRNA helicase RRP3 OS=Gibberel...  305     1e-94 
sp|Q84UQ1|RH42_ORYSJ DEAD-box ATP-dependent RNA helicase 42 OS=Or...  320     1e-94 
sp|Q4WX43|IF4A_ASPFU ATP-dependent RNA helicase eIF4A OS=Aspergil...  302     2e-94 
sp|Q49Z29|CSHA_STAS1 DEAD-box ATP-dependent RNA helicase CshA OS=...  305     2e-94 
sp|P19109|DDX17_DROME ATP-dependent RNA helicase p62 OS=Drosophil...  312     2e-94 
sp|Q7RV88|IF4A_NEUCR ATP-dependent RNA helicase eIF4A OS=Neurospo...  302     2e-94 
sp|B4F1V3|RHLB_PROMH ATP-dependent RNA helicase RhlB OS=Proteus m...  303     2e-94 
sp|A7EGL7|IF4A_SCLS1 ATP-dependent RNA helicase eIF4A OS=Scleroti...  302     3e-94 
sp|Q088J2|RHLB_SHEFN ATP-dependent RNA helicase RhlB OS=Shewanell...  303     3e-94 
sp|Q8Y7M8|DBPA_LISMO ATP-dependent RNA helicase DbpA OS=Listeria ...  304     3e-94 
sp|Q2HFP1|IF4A_CHAGB ATP-dependent RNA helicase eIF4A OS=Chaetomi...  301     4e-94 
sp|Q5B948|IF4A_EMENI ATP-dependent RNA helicase eIF4A OS=Emericel...  301     5e-94 
sp|A1D7N3|IF4A_NEOFI ATP-dependent RNA helicase eIF4A OS=Neosarto...  301     5e-94 
sp|Q8GY84|RH10_ARATH DEAD-box ATP-dependent RNA helicase 10 OS=Ar...  303     5e-94 
sp|A6RJ45|IF4A_BOTFB ATP-dependent RNA helicase eIF4A OS=Botryoti...  301     5e-94 
sp|C3LQR1|RHLB_VIBCM ATP-dependent RNA helicase RhlB OS=Vibrio ch...  302     6e-94 
sp|Q9KV52|RHLB_VIBCH ATP-dependent RNA helicase RhlB OS=Vibrio ch...  302     6e-94 
sp|A5F3R4|RHLB_VIBC3 ATP-dependent RNA helicase RhlB OS=Vibrio ch...  302     6e-94 
sp|Q4P733|DED1_USTMA ATP-dependent RNA helicase DED1 OS=Ustilago ...  309     7e-94 
sp|A4QVP2|IF4A_PYRO7 ATP-dependent RNA helicase eIF4A OS=Pyricula...  300     7e-94 
sp|Q12S35|RHLB_SHEDO ATP-dependent RNA helicase RhlB OS=Shewanell...  302     7e-94 
sp|Q1DQ20|IF4A_COCIM ATP-dependent RNA helicase eIF4A OS=Coccidio...  300     9e-94 
sp|Q4L7W0|CSHA_STAHJ DEAD-box ATP-dependent RNA helicase CshA OS=...  304     9e-94 
sp|P57453|DEAD_BUCAI ATP-dependent RNA helicase DeaD OS=Buchnera ...  307     1e-93 
sp|Q5BDW4|PRP5_EMENI Pre-mRNA-processing ATP-dependent RNA helica...  319     1e-93 
sp|A3LS22|RRP3_PICST ATP-dependent rRNA helicase RRP3 OS=Scheffer...  303     1e-93 
sp|Q6CZD9|RHLB_PECAS ATP-dependent RNA helicase RhlB OS=Pectobact...  301     1e-93 
sp|A5DQF1|RRP3_PICGU ATP-dependent rRNA helicase RRP3 OS=Meyerozy...  302     1e-93 
sp|Q88NB7|RHLB_PSEPK ATP-dependent RNA helicase RhlB OS=Pseudomon...  300     2e-93 
sp|Q54CE0|DDX17_DICDI Probable ATP-dependent RNA helicase ddx17 O...  311     2e-93 
sp|Q0CXD0|IF4A_ASPTN ATP-dependent RNA helicase eIF4A OS=Aspergil...  299     2e-93 
sp|C6DHF5|RHLB_PECCP ATP-dependent RNA helicase RhlB OS=Pectobact...  300     2e-93 
sp|A1CJT5|IF4A_ASPCL ATP-dependent RNA helicase eIF4A OS=Aspergil...  299     3e-93 
sp|Q10202|DBP3_SCHPO ATP-dependent RNA helicase dbp3 OS=Schizosac...  305     3e-93 
sp|Q0ILZ4|RH9_ORYSJ DEAD-box ATP-dependent RNA helicase 9 OS=Oryz...  306     3e-93 
sp|Q4WT99|PRP5_ASPFU Pre-mRNA-processing ATP-dependent RNA helica...  318     3e-93 
sp|B1KQF6|RHLB_SHEWM ATP-dependent RNA helicase RhlB OS=Shewanell...  300     3e-93 
sp|Q755A5|DBP3_EREGS ATP-dependent RNA helicase DBP3 OS=Eremothec...  303     3e-93 
sp|Q5AAW3|DHH1_CANAL ATP-dependent RNA helicase DHH1 OS=Candida a...  304     3e-93 
sp|A5E1W4|DBP3_LODEL ATP-dependent RNA helicase DBP3 OS=Lodderomy...  303     4e-93 
sp|Q9BUQ8|DDX23_HUMAN Probable ATP-dependent RNA helicase DDX23 O...  311     4e-93 
sp|A9L5D5|RHLB_SHEB9 ATP-dependent RNA helicase RhlB OS=Shewanell...  300     4e-93 
sp|A6WTD3|RHLB_SHEB8 ATP-dependent RNA helicase RhlB OS=Shewanell...  300     4e-93 
sp|P33906|DEAD_KLEPN ATP-dependent RNA helicase DeaD OS=Klebsiell...  307     4e-93 
sp|A1RFB3|RHLB_SHESW ATP-dependent RNA helicase RhlB OS=Shewanell...  300     4e-93 
sp|A4YB09|RHLB_SHEPC ATP-dependent RNA helicase RhlB OS=Shewanell...  300     4e-93 
sp|Q5HME0|CSHA_STAEQ DEAD-box ATP-dependent RNA helicase CshA OS=...  302     4e-93 
sp|Q8CRP6|CSHA_STAES DEAD-box ATP-dependent RNA helicase CshA OS=...  302     5e-93 
sp|A9MJ29|RHLB_SALAR ATP-dependent RNA helicase RhlB OS=Salmonell...  299     5e-93 
sp|Q8JFP1|IF4A2_CHICK Eukaryotic initiation factor 4A-II OS=Gallu...  298     5e-93 
sp|Q8EJQ5|RHLB_SHEON ATP-dependent RNA helicase RhlB OS=Shewanell...  300     5e-93 
sp|Q0UK12|RRP3_PHANO ATP-dependent rRNA helicase RRP3 OS=Phaeosph...  303     6e-93 
sp|A1D373|PRP5_NEOFI Pre-mRNA-processing ATP-dependent RNA helica...  317     6e-93 
sp|Q1DHB2|PRP5_COCIM Pre-mRNA-processing ATP-dependent RNA helica...  317     6e-93 
sp|P0A2P0|RHLB_SALTY ATP-dependent RNA helicase RhlB OS=Salmonell...  299     6e-93 
sp|P0A2P1|RHLB_SALTI ATP-dependent RNA helicase RhlB OS=Salmonell...  299     6e-93 
sp|B4TNT3|RHLB_SALSV ATP-dependent RNA helicase RhlB OS=Salmonell...  299     6e-93 
sp|C0Q2V9|RHLB_SALPC ATP-dependent RNA helicase RhlB OS=Salmonell...  299     6e-93 
sp|A9MXF3|RHLB_SALPB ATP-dependent RNA helicase RhlB OS=Salmonell...  299     6e-93 
sp|B4SZ26|RHLB_SALNS ATP-dependent RNA helicase RhlB OS=Salmonell...  299     6e-93 
sp|B4TB13|RHLB_SALHS ATP-dependent RNA helicase RhlB OS=Salmonell...  299     6e-93 
sp|B5RFS3|RHLB_SALG2 ATP-dependent RNA helicase RhlB OS=Salmonell...  299     6e-93 
sp|B5QVH2|RHLB_SALEP ATP-dependent RNA helicase RhlB OS=Salmonell...  299     6e-93 
sp|Q57HT6|RHLB_SALCH ATP-dependent RNA helicase RhlB OS=Salmonell...  299     6e-93 
sp|B5EZ40|RHLB_SALA4 ATP-dependent RNA helicase RhlB OS=Salmonell...  299     6e-93 
sp|A1CQA9|PRP5_ASPCL Pre-mRNA-processing ATP-dependent RNA helica...  317     6e-93 
sp|P93008|RH21_ARATH DEAD-box ATP-dependent RNA helicase 21 OS=Ar...  308     7e-93 
sp|Q0SYX0|RHLB_SHIF8 ATP-dependent RNA helicase RhlB OS=Shigella ...  298     7e-93 
sp|A3D9I5|RHLB_SHEB5 ATP-dependent RNA helicase RhlB OS=Shewanell...  299     8e-93 
sp|B8E670|RHLB_SHEB2 ATP-dependent RNA helicase RhlB OS=Shewanell...  299     8e-93 
sp|Q09719|DBP10_SCHPO ATP-dependent RNA helicase dbp10 OS=Schizos...  311     8e-93 
sp|Q5RKI1|IF4A2_RAT Eukaryotic initiation factor 4A-II OS=Rattus ...  298     9e-93 
sp|Q5R4X1|IF4A2_PONAB Eukaryotic initiation factor 4A-II OS=Pongo...  298     9e-93 
sp|P10630|IF4A2_MOUSE Eukaryotic initiation factor 4A-II OS=Mus m...  298     9e-93 
sp|Q14240|IF4A2_HUMAN Eukaryotic initiation factor 4A-II OS=Homo ...  298     9e-93 
sp|Q3SZ65|IF4A2_BOVIN Eukaryotic initiation factor 4A-II OS=Bos t...  298     9e-93 
sp|B2VG58|RHLB_ERWT9 ATP-dependent RNA helicase RhlB OS=Erwinia t...  299     9e-93 
sp|P0A9P8|DEAD_SHIFL ATP-dependent RNA helicase DeaD OS=Shigella ...  305     1e-92 
sp|P0A9P6|DEAD_ECOLI ATP-dependent RNA helicase DeaD OS=Escherich...  305     1e-92 
sp|P0A9P7|DEAD_ECOL6 ATP-dependent RNA helicase DeaD OS=Escherich...  305     1e-92 
sp|Q8XA87|DEAD_ECO57 ATP-dependent RNA helicase DeaD OS=Escherich...  305     1e-92 
sp|Q4R4Y9|IF4A2_MACFA Eukaryotic initiation factor 4A-II OS=Macac...  298     1e-92 
sp|Q6FW42|DRS1_CANGA ATP-dependent RNA helicase DRS1 OS=Candida g...  307     1e-92 
sp|A5DKW3|DRS1_PICGU ATP-dependent RNA helicase DRS1 OS=Meyerozym...  307     1e-92 
sp|B5BIS9|RHLB_SALPK ATP-dependent RNA helicase RhlB OS=Salmonell...  298     1e-92 
sp|Q0HQL1|RHLB_SHESR ATP-dependent RNA helicase RhlB OS=Shewanell...  298     1e-92 
sp|Q0HN76|RHLB_SHESM ATP-dependent RNA helicase RhlB OS=Shewanell...  298     1e-92 
sp|Q6YS30|RH5_ORYSJ DEAD-box ATP-dependent RNA helicase 5 OS=Oryz...  301     1e-92 
sp|B5FN74|RHLB_SALDC ATP-dependent RNA helicase RhlB OS=Salmonell...  298     2e-92 
sp|A6VKC3|RHLB_ACTSZ ATP-dependent RNA helicase RhlB OS=Actinobac...  297     2e-92 
sp|A6SCT6|DBP3_BOTFB ATP-dependent RNA helicase dbp3 OS=Botryotin...  303     2e-92 
sp|Q2UHC1|DBP10_ASPOR ATP-dependent RNA helicase dbp10 OS=Aspergi...  312     2e-92 
sp|Q0D1K3|PRP5_ASPTN Pre-mRNA-processing ATP-dependent RNA helica...  316     2e-92 
sp|Q9HXE5|RHLB_PSEAE ATP-dependent RNA helicase RhlB OS=Pseudomon...  297     2e-92 
sp|Q02S21|RHLB_PSEAB ATP-dependent RNA helicase RhlB OS=Pseudomon...  297     2e-92 
sp|B7UUT0|RHLB_PSEA8 ATP-dependent RNA helicase RhlB OS=Pseudomon...  297     2e-92 
sp|Q87KH5|RHLB_VIBPA ATP-dependent RNA helicase RhlB OS=Vibrio pa...  298     2e-92 
sp|O25029|RHPA_HELPY DEAD-box ATP-dependent RNA helicase RhpA OS=...  300     2e-92 
sp|B7LU75|RHLB_ESCF3 ATP-dependent RNA helicase RhlB OS=Escherich...  297     2e-92 
sp|P20447|DBP3_YEAST ATP-dependent RNA helicase DBP3 OS=Saccharom...  301     2e-92 
sp|Q54QS3|DDX3_DICDI Probable ATP-dependent RNA helicase ddx3 OS=...  306     2e-92 
sp|Q5RC67|DDX23_PONAB Probable ATP-dependent RNA helicase DDX23 O...  309     2e-92 
sp|Q89AF9|DEAD_BUCBP ATP-dependent RNA helicase DeaD OS=Buchnera ...  303     2e-92 
sp|P47943|IF4A_SCHPO ATP-dependent RNA helicase eIF4A OS=Schizosa...  296     2e-92 
sp|Q9LU46|RH35_ARATH DEAD-box ATP-dependent RNA helicase 35 OS=Ar...  303     2e-92 
sp|B7NTG2|RHLB_ECO7I ATP-dependent RNA helicase RhlB OS=Escherich...  297     2e-92 
sp|B9XXL6|RHPA_HELP8 DEAD-box ATP-dependent RNA helicase RhpA OS=...  300     3e-92 
sp|Q4P331|IF4A_USTMA ATP-dependent RNA helicase eIF4A OS=Ustilago...  297     3e-92 
sp|Q3YVI4|RHLB_SHISS ATP-dependent RNA helicase RhlB OS=Shigella ...  297     3e-92 
sp|P0A8K0|RHLB_SHIFL ATP-dependent RNA helicase RhlB OS=Shigella ...  297     3e-92 
sp|Q1R4F9|RHLB_ECOUT ATP-dependent RNA helicase RhlB OS=Escherich...  297     3e-92 
sp|B6I4B6|RHLB_ECOSE ATP-dependent RNA helicase RhlB OS=Escherich...  297     3e-92 
sp|P0A8J8|RHLB_ECOLI ATP-dependent RNA helicase RhlB OS=Escherich...  297     3e-92 
sp|B1IWC0|RHLB_ECOLC ATP-dependent RNA helicase RhlB OS=Escherich...  297     3e-92 
sp|P0A8J9|RHLB_ECOL6 ATP-dependent RNA helicase RhlB OS=Escherich...  297     3e-92 
sp|Q0TAU3|RHLB_ECOL5 ATP-dependent RNA helicase RhlB OS=Escherich...  297     3e-92 
sp|A1AHV0|RHLB_ECOK1 ATP-dependent RNA helicase RhlB OS=Escherich...  297     3e-92 
sp|A8A6N4|RHLB_ECOHS ATP-dependent RNA helicase RhlB OS=Escherich...  297     3e-92 
sp|B1X9Z4|RHLB_ECODH ATP-dependent RNA helicase RhlB OS=Escherich...  297     3e-92 
sp|C4ZZ48|RHLB_ECOBW ATP-dependent RNA helicase RhlB OS=Escherich...  297     3e-92 
sp|B7M5C7|RHLB_ECO8A ATP-dependent RNA helicase RhlB OS=Escherich...  297     3e-92 
sp|B7MR01|RHLB_ECO81 ATP-dependent RNA helicase RhlB OS=Escherich...  297     3e-92 
sp|B7L8B6|RHLB_ECO55 ATP-dependent RNA helicase RhlB OS=Escherich...  297     3e-92 
sp|B7MGJ1|RHLB_ECO45 ATP-dependent RNA helicase RhlB OS=Escherich...  297     3e-92 
sp|B7UMN5|RHLB_ECO27 ATP-dependent RNA helicase RhlB OS=Escherich...  297     3e-92 
sp|A7ZTY2|RHLB_ECO24 ATP-dependent RNA helicase RhlB OS=Escherich...  297     3e-92 
sp|B7NF85|RHLB_ECOLU ATP-dependent RNA helicase RhlB OS=Escherich...  297     3e-92 
sp|B1LLV3|RHLB_ECOSM ATP-dependent RNA helicase RhlB OS=Escherich...  297     3e-92 
sp|A3Q9R3|RHLB_SHELP ATP-dependent RNA helicase RhlB OS=Shewanell...  297     3e-92 
sp|B5YY28|RHLB_ECO5E ATP-dependent RNA helicase RhlB OS=Escherich...  297     3e-92 
sp|Q31UK5|RHLB_SHIBS ATP-dependent RNA helicase RhlB OS=Shigella ...  297     3e-92 
sp|B2TU12|RHLB_SHIB3 ATP-dependent RNA helicase RhlB OS=Shigella ...  297     3e-92 
sp|A4WG30|RHLB_ENT38 ATP-dependent RNA helicase RhlB OS=Enterobac...  297     3e-92 
sp|A6ZUA1|DBP3_YEAS7 ATP-dependent RNA helicase DBP3 OS=Saccharom...  300     3e-92 
sp|Q5BFU7|DBP10_EMENI ATP-dependent RNA helicase dbp10 OS=Emerice...  311     4e-92 
sp|B5FF87|RHLB_ALIFM ATP-dependent RNA helicase RhlB OS=Aliivibri...  297     4e-92 
sp|Q2UPY3|IF4A_ASPOR ATP-dependent RNA helicase eIF4A OS=Aspergil...  297     4e-92 
sp|Q9P7C7|PRP11_SCHPO Pre-mRNA-processing ATP-dependent RNA helic...  312     4e-92 
sp|Q9LUW6|RH9_ARATH DEAD-box ATP-dependent RNA helicase 9, mitoch...  303     4e-92 
sp|A6TGG9|RHLB_KLEP7 ATP-dependent RNA helicase RhlB OS=Klebsiell...  297     4e-92 
sp|Q2U2J6|PRP5_ASPOR Pre-mRNA-processing ATP-dependent RNA helica...  315     4e-92 
sp|P29562|IF4A1_RABIT Eukaryotic initiation factor 4A-I (Fragment...  296     4e-92 
sp|A7TJ36|DBP3_VANPO ATP-dependent RNA helicase DBP3 OS=Vanderwal...  300     4e-92 
sp|A2QQA8|PRP5_ASPNC Pre-mRNA-processing ATP-dependent RNA helica...  315     5e-92 
sp|B5XYY9|RHLB_KLEP3 ATP-dependent RNA helicase RhlB OS=Klebsiell...  297     5e-92 
sp|Q0CGJ9|SUB2_ASPTN ATP-dependent RNA helicase sub2 OS=Aspergill...  297     5e-92 
sp|A8ACT3|RHLB_CITK8 ATP-dependent RNA helicase RhlB OS=Citrobact...  296     5e-92 
sp|Q9Y7T7|PRP28_SCHPO Pre-mRNA-splicing ATP-dependent RNA helicas...  304     6e-92 
sp|Q2UMH8|DBP3_ASPOR ATP-dependent RNA helicase dbp3 OS=Aspergill...  299     6e-92 
sp|B8CHZ1|RHLB_SHEPW ATP-dependent RNA helicase RhlB OS=Shewanell...  297     6e-92 
sp|Q7XMK8|RH6_ORYSJ DEAD-box ATP-dependent RNA helicase 6 OS=Oryz...  299     6e-92 
sp|Q4R8K5|IF4A1_MACFA Eukaryotic initiation factor 4A-I OS=Macaca...  296     6e-92 
sp|A4R715|DHH1_PYRO7 ATP-dependent RNA helicase DHH1 OS=Pyricular...  300     6e-92 
sp|A8G0U0|RHLB_SHESH ATP-dependent RNA helicase RhlB OS=Shewanell...  297     6e-92 
sp|A2QFL3|DBP3_ASPNC ATP-dependent RNA helicase dbp3 OS=Aspergill...  298     6e-92 
sp|A8GZJ0|RHLB_SHEPA ATP-dependent RNA helicase RhlB OS=Shewanell...  297     6e-92 
sp|B0TJ29|RHLB_SHEHH ATP-dependent RNA helicase RhlB OS=Shewanell...  297     7e-92 
sp|A7MQI2|RHLB_CROS8 ATP-dependent RNA helicase RhlB OS=Cronobact...  296     7e-92 
sp|P60843|IF4A1_MOUSE Eukaryotic initiation factor 4A-I OS=Mus mu...  295     7e-92 
sp|P60842|IF4A1_HUMAN Eukaryotic initiation factor 4A-I OS=Homo s...  295     7e-92 
sp|Q3SZ54|IF4A1_BOVIN Eukaryotic initiation factor 4A-I OS=Bos ta...  295     7e-92 
sp|Q2NQB2|RHLB_SODGM ATP-dependent RNA helicase RhlB OS=Sodalis g...  296     7e-92 
sp|A8G828|RHLB_SERP5 ATP-dependent RNA helicase RhlB OS=Serratia ...  296     7e-92 
sp|Q8XAT4|RHLB_ECO57 ATP-dependent RNA helicase RhlB OS=Escherich...  296     7e-92 
sp|Q329V8|RHLB_SHIDS ATP-dependent RNA helicase RhlB OS=Shigella ...  296     7e-92 
sp|P09052|VASA1_DROME ATP-dependent RNA helicase vasa OS=Drosophi...  303     8e-92 
sp|Q887N8|RHLB_PSESM ATP-dependent RNA helicase RhlB OS=Pseudomon...  295     9e-92 
sp|Q5E8U5|RHLB_ALIF1 ATP-dependent RNA helicase RhlB OS=Aliivibri...  296     9e-92 
sp|Q02748|IF4A_DROME Eukaryotic initiation factor 4A OS=Drosophil...  295     1e-91 
sp|P44586|DEAD_HAEIN ATP-dependent RNA helicase DeaD OS=Haemophil...  302     1e-91 
sp|Q0UY62|DBP3_PHANO ATP-dependent RNA helicase DBP3 OS=Phaeospha...  301     1e-91 
sp|P0CQ70|IF4A_CRYNJ ATP-dependent RNA helicase eIF4A OS=Cryptoco...  295     1e-91 
sp|P0CQ71|IF4A_CRYNB ATP-dependent RNA helicase eIF4A OS=Cryptoco...  295     1e-91 
sp|A0KEG9|RHLB_AERHH ATP-dependent RNA helicase RhlB OS=Aeromonas...  295     1e-91 
sp|Q75BS4|DHH1_EREGS ATP-dependent RNA helicase DHH1 OS=Eremothec...  297     1e-91 
sp|P0CQ74|DED1_CRYNJ ATP-dependent RNA helicase ded1 OS=Cryptococ...  302     1e-91 
sp|P0CQ75|DED1_CRYNB ATP-dependent RNA helicase ded1 OS=Cryptococ...  302     1e-91 
sp|Q2GQ93|DHH1_CHAGB ATP-dependent RNA helicase DHH1 OS=Chaetomiu...  298     2e-91 
sp|Q9C551|RH5_ARATH DEAD-box ATP-dependent RNA helicase 5 OS=Arab...  299     2e-91 
sp|A1DL85|SUB2_NEOFI ATP-dependent RNA helicase sub2 OS=Neosartor...  295     2e-91 
sp|Q0D8N0|RH53_ORYSJ DEAD-box ATP-dependent RNA helicase 53 OS=Or...  300     2e-91 
sp|A7MXT4|RHLB_VIBC1 ATP-dependent RNA helicase RhlB OS=Vibrio ca...  295     2e-91 
sp|A0KS84|RHLB_SHESA ATP-dependent RNA helicase RhlB OS=Shewanell...  295     2e-91 
sp|A1DG51|DBP3_NEOFI ATP-dependent RNA helicase dbp3 OS=Neosartor...  297     2e-91 
sp|Q5R5F5|IF4A1_PONAB Eukaryotic initiation factor 4A-I OS=Pongo ...  294     3e-91 
sp|Q2H0R2|DBP10_CHAGB ATP-dependent RNA helicase DBP10 OS=Chaetom...  305     3e-91 
sp|Q0CL13|DBP3_ASPTN ATP-dependent RNA helicase dbp3 OS=Aspergill...  297     3e-91 
sp|A6R3R5|IF4A_AJECN ATP-dependent RNA helicase eIF4A OS=Ajellomy...  293     4e-91 
sp|Q8RXK6|RH8_ARATH DEAD-box ATP-dependent RNA helicase 8 OS=Arab...  297     4e-91 
sp|Q6FS54|DBP3_CANGA ATP-dependent RNA helicase DBP3 OS=Candida g...  298     4e-91 
sp|Q4IP34|PRP5_GIBZE Pre-mRNA-processing ATP-dependent RNA helica...  312     4e-91 
sp|Q6CT46|DBP3_KLULA ATP-dependent RNA helicase DBP3 OS=Kluyverom...  297     4e-91 
sp|Q109G2|RH12_ORYSJ DEAD-box ATP-dependent RNA helicase 12 OS=Or...  297     4e-91 
sp|A1CMQ7|SUB2_ASPCL ATP-dependent RNA helicase sub2 OS=Aspergill...  295     4e-91 
sp|Q53RK8|RH21_ORYSJ DEAD-box ATP-dependent RNA helicase 21 OS=Or...  303     5e-91 
sp|O22907|RH24_ARATH DEAD-box ATP-dependent RNA helicase 24 OS=Ar...  304     5e-91 
sp|Q2U6P7|SUB2_ASPOR ATP-dependent RNA helicase sub2 OS=Aspergill...  294     6e-91 
sp|A4STJ7|RHLB_AERS4 ATP-dependent RNA helicase RhlB OS=Aeromonas...  294     6e-91 
sp|B7VME9|RHLB_VIBA3 ATP-dependent RNA helicase RhlB OS=Vibrio at...  294     6e-91 
sp|Q7MYL2|RHLB_PHOLL ATP-dependent RNA helicase RhlB OS=Photorhab...  294     6e-91 
sp|A5DS77|DBP2_LODEL ATP-dependent RNA helicase DBP2 OS=Lodderomy...  298     7e-91 
sp|A5DB98|IF4A_PICGU ATP-dependent RNA helicase eIF4A OS=Meyerozy...  292     8e-91 
sp|A2R0B5|SUB2_ASPNC ATP-dependent RNA helicase sub2 OS=Aspergill...  294     8e-91 
sp|Q9LUW5|RH53_ARATH DEAD-box ATP-dependent RNA helicase 53, mito...  299     8e-91 
sp|Q7Y183|RH10_ORYSJ DEAD-box ATP-dependent RNA helicase 10 OS=Or...  295     9e-91 
sp|A2XKG2|RH10_ORYSI DEAD-box ATP-dependent RNA helicase 10 OS=Or...  295     9e-91 
sp|Q7MGP7|RHLB_VIBVY ATP-dependent RNA helicase RhlB OS=Vibrio vu...  293     9e-91 
sp|Q7SEL0|PRP28_NEUCR Pre-mRNA-splicing ATP-dependent RNA helicas...  302     9e-91 
sp|P39517|DHH1_YEAST ATP-dependent RNA helicase DHH1 OS=Saccharom...  296     9e-91 
sp|A6ZXG9|DHH1_YEAS7 ATP-dependent RNA helicase DHH1 OS=Saccharom...  296     9e-91 
sp|A7TGU7|DHH1_VANPO ATP-dependent RNA helicase DHH1 OS=Vanderwal...  295     1e-90 
sp|Q4HW67|DHH1_GIBZE ATP-dependent RNA helicase DHH1 OS=Gibberell...  295     1e-90 
sp|P32892|DRS1_YEAST ATP-dependent RNA helicase DRS1 OS=Saccharom...  303     1e-90 
sp|Q4WCW2|SUB2_ASPFU ATP-dependent RNA helicase sub2 OS=Aspergill...  294     1e-90 
sp|A7A0P8|DRS1_YEAS7 ATP-dependent RNA helicase DRS1 OS=Saccharom...  303     1e-90 
sp|A5A6N4|IF4A1_PANTR Eukaryotic initiation factor 4A-I OS=Pan tr...  292     1e-90 
sp|A1C5V3|DBP3_ASPCL ATP-dependent RNA helicase dbp3 OS=Aspergill...  295     1e-90 
sp|Q6LLL5|RHLB_PHOPR ATP-dependent RNA helicase RhlB OS=Photobact...  293     1e-90 
sp|Q8DDN6|RHLB_VIBVU ATP-dependent RNA helicase RhlB OS=Vibrio vu...  293     1e-90 
sp|B1JQ11|RHLB_YERPY ATP-dependent RNA helicase RhlB OS=Yersinia ...  293     1e-90 
sp|Q66G19|RHLB_YERPS ATP-dependent RNA helicase RhlB OS=Yersinia ...  293     1e-90 
sp|A4TRC8|RHLB_YERPP ATP-dependent RNA helicase RhlB OS=Yersinia ...  293     1e-90 
sp|Q1CNK3|RHLB_YERPN ATP-dependent RNA helicase RhlB OS=Yersinia ...  293     1e-90 
sp|Q8ZAD8|RHLB_YERPE ATP-dependent RNA helicase RhlB OS=Yersinia ...  293     1e-90 
sp|B2K046|RHLB_YERPB ATP-dependent RNA helicase RhlB OS=Yersinia ...  293     1e-90 
sp|Q1CBQ4|RHLB_YERPA ATP-dependent RNA helicase RhlB OS=Yersinia ...  293     1e-90 
sp|A7FD47|RHLB_YERP3 ATP-dependent RNA helicase RhlB OS=Yersinia ...  293     1e-90 
sp|Q1EB38|DBP10_COCIM ATP-dependent RNA helicase DBP10 OS=Coccidi...  307     1e-90 
sp|A4RK80|PRP28_PYRO7 Pre-mRNA-splicing ATP-dependent RNA helicas...  300     1e-90 
sp|A7EIX7|SUB2_SCLS1 ATP-dependent RNA helicase sub2 OS=Sclerotin...  293     2e-90 
sp|A2QEN5|IF4A_ASPNC ATP-dependent RNA helicase eIF4A OS=Aspergil...  292     2e-90 
sp|Q58083|H669_METJA Probable ATP-dependent RNA helicase MJ0669 O...  290     2e-90 
sp|Q2H4D0|SUB2_CHAGB ATP-dependent RNA helicase SUB2 OS=Chaetomiu...  293     2e-90 
sp|A1CTZ6|DBP10_ASPCL ATP-dependent RNA helicase dbp10 OS=Aspergi...  306     2e-90 
sp|Q1DI07|SUB2_COCIM ATP-dependent RNA helicase SUB2 OS=Coccidioi...  293     2e-90 
sp|A1SAL1|RHLB_SHEAM ATP-dependent RNA helicase RhlB OS=Shewanell...  293     2e-90 
sp|A7EYW0|DBP3_SCLS1 ATP-dependent RNA helicase dbp3 OS=Sclerotin...  298     2e-90 
sp|Q6C9P3|DBP3_YARLI ATP-dependent RNA helicase DBP3 OS=Yarrowia ...  295     3e-90 
sp|Q7SH33|PRP5_NEUCR Pre-mRNA-processing ATP-dependent RNA helica...  310     3e-90 
sp|P21693|DBPA_ECOLI ATP-dependent RNA helicase DbpA OS=Escherich...  293     3e-90 
sp|Q54VT4|DDX47_DICDI Probable ATP-dependent RNA helicase ddx47 O...  296     3e-90 
sp|Q9M2E0|RH12_ARATH DEAD-box ATP-dependent RNA helicase 12 OS=Ar...  294     4e-90 
sp|Q94BV4|RH6_ARATH DEAD-box ATP-dependent RNA helicase 6 OS=Arab...  295     4e-90 
sp|Q6H7S2|RH8_ORYSJ DEAD-box ATP-dependent RNA helicase 8 OS=Oryz...  294     4e-90 
sp|Q1E5R1|DHH1_COCIM ATP-dependent RNA helicase DHH1 OS=Coccidioi...  294     4e-90 
sp|Q6BTL5|DRS1_DEBHA ATP-dependent RNA helicase DRS1 OS=Debaryomy...  302     5e-90 
sp|Q4WH83|DBP3_ASPFU ATP-dependent RNA helicase dbp3 OS=Aspergill...  294     5e-90 
sp|Q26696|DDX17_TRYBB Putative DEAD-box RNA helicase HEL64 OS=Try...  296     5e-90 
sp|Q0CMM8|DBP10_ASPTN ATP-dependent RNA helicase dbp10 OS=Aspergi...  305     5e-90 
sp|C4LB49|RHLB_TOLAT ATP-dependent RNA helicase RhlB OS=Tolumonas...  291     5e-90 
sp|A3LQW7|DBP2_PICST ATP-dependent RNA helicase DBP2 OS=Scheffers...  295     6e-90 
sp|Q9SZB4|RH43_ARATH Putative DEAD-box ATP-dependent RNA helicase...  295     6e-90 
sp|Q6CSZ7|DHH1_KLULA ATP-dependent RNA helicase DHH1 OS=Kluyverom...  294     7e-90 
sp|A1CJ18|DHH1_ASPCL ATP-dependent RNA helicase dhh1 OS=Aspergill...  293     7e-90 
sp|Q6BRN4|IF4A_DEBHA ATP-dependent RNA helicase eIF4A OS=Debaryom...  290     7e-90 
sp|A2QY39|DHH1_ASPNC ATP-dependent RNA helicase dhh1 OS=Aspergill...  293     8e-90 
sp|P0CQ79|DBP3_CRYNB ATP-dependent RNA helicase DBP3 OS=Cryptococ...  297     8e-90 
sp|Q9NXZ2|DDX43_HUMAN Probable ATP-dependent RNA helicase DDX43 O...  298     8e-90 
sp|Q7S9J4|DBP10_NEUCR ATP-dependent RNA helicase dbp-10 OS=Neuros...  305     8e-90 
sp|Q0E3X4|RH35A_ORYSJ DEAD-box ATP-dependent RNA helicase 35A OS=...  297     9e-90 
sp|Q5AWA6|DBP3_EMENI ATP-dependent RNA helicase dbp3 OS=Emericell...  293     9e-90 
sp|B6EPA4|RHLB_ALISL ATP-dependent RNA helicase RhlB OS=Aliivibri...  291     9e-90 
sp|Q0JM17|RH56_ORYSJ DEAD-box ATP-dependent RNA helicase 56 OS=Or...  291     1e-89 
sp|Q0CBE1|DHH1_ASPTN ATP-dependent RNA helicase dhh1 OS=Aspergill...  293     1e-89 
sp|P0CQ78|DBP3_CRYNJ ATP-dependent RNA helicase DBP3 OS=Cryptococ...  296     1e-89 
sp|Q09903|DRS1_SCHPO ATP-dependent RNA helicase drs1 OS=Schizosac...  300     1e-89 
sp|A7ENE0|PRP5_SCLS1 Pre-mRNA-processing ATP-dependent RNA helica...  307     1e-89 
sp|Q95YF3|CGH1_CAEEL ATP-dependent RNA helicase cgh-1 OS=Caenorha...  290     1e-89 
sp|Q5JK84|RH15_ORYSJ DEAD-box ATP-dependent RNA helicase 15 OS=Or...  290     1e-89 
sp|A2QRY2|DBP10_ASPNC ATP-dependent RNA helicase dbp10 OS=Aspergi...  304     1e-89 
sp|P87206|IF4A_CANAL ATP-dependent RNA helicase eIF4A OS=Candida ...  289     1e-89 
sp|A1D8G1|DHH1_NEOFI ATP-dependent RNA helicase dhh1 OS=Neosartor...  293     2e-89 
sp|A1CX72|PRP28_NEOFI Pre-mRNA-splicing ATP-dependent RNA helicas...  301     2e-89 
sp|A5UI36|RHLB_HAEIG ATP-dependent RNA helicase RhlB OS=Haemophil...  289     2e-89 
sp|Q6FQU5|DHH1_CANGA ATP-dependent RNA helicase DHH1 OS=Candida g...  292     2e-89 
sp|Q4WWD3|DHH1_ASPFU ATP-dependent RNA helicase dhh1 OS=Aspergill...  292     2e-89 
sp|Q54E49|DDX6_DICDI Probable ATP-dependent RNA helicase ddx6 OS=...  290     2e-89 
sp|Q8NJM2|DBP10_ASPFU ATP-dependent RNA helicase dbp10 OS=Aspergi...  302     2e-89 
sp|C4K8M8|RHLB_HAMD5 ATP-dependent RNA helicase RhlB OS=Hamiltone...  290     2e-89 
sp|Q4WPE9|PRP28_ASPFU Pre-mRNA-splicing ATP-dependent RNA helicas...  300     3e-89 
sp|A4R5B8|DBP10_PYRO7 ATP-dependent RNA helicase DBP10 OS=Pyricul...  303     3e-89 
sp|A6QXC1|DBP3_AJECN ATP-dependent RNA helicase DBP3 OS=Ajellomyc...  292     3e-89 
sp|Q1DMX8|PRP28_COCIM Pre-mRNA-splicing ATP-dependent RNA helicas...  301     3e-89 
sp|A1DNG2|DBP10_NEOFI ATP-dependent RNA helicase dbp10 OS=Neosart...  303     3e-89 
sp|Q5APT8|DBP3_CANAL ATP-dependent RNA helicase DBP3 OS=Candida a...  294     3e-89 
sp|A6QUM7|DBP10_AJECN ATP-dependent RNA helicase DBP10 OS=Ajellom...  302     3e-89 
sp|Q0U7S9|DHH1_PHANO ATP-dependent RNA helicase DHH1 OS=Phaeospha...  292     3e-89 
sp|Q55BR9|DDX49_DICDI Probable ATP-dependent RNA helicase ddx49 O...  292     4e-89 
sp|Q91VN6|DDX41_MOUSE Probable ATP-dependent RNA helicase DDX41 O...  295     4e-89 
sp|Q4HZ42|DBP10_GIBZE ATP-dependent RNA helicase DBP10 OS=Gibbere...  302     4e-89 
sp|A5DVM3|IF4A_LODEL ATP-dependent RNA helicase eIF4A OS=Lodderom...  288     4e-89 
sp|Q2U5A2|DHH1_ASPOR ATP-dependent RNA helicase dhh1 OS=Aspergill...  292     4e-89 
sp|A5DDN0|SUB2_PICGU ATP-dependent RNA helicase SUB2 OS=Meyerozym...  289     4e-89 
sp|Q2HEB0|PRP28_CHAGB Pre-mRNA-splicing ATP-dependent RNA helicas...  297     4e-89 
sp|A3LST5|SUB2_PICST ATP-dependent RNA helicase SUB2 OS=Scheffers...  289     4e-89 
sp|A4RBS3|SUB2_PYRO7 ATP-dependent RNA helicase SUB2 OS=Pyricular...  289     5e-89 
sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42 OS=Ar...  306     6e-89 
sp|Q9UJV9|DDX41_HUMAN Probable ATP-dependent RNA helicase DDX41 O...  295     6e-89 
sp|Q6BME5|SUB2_DEBHA ATP-dependent RNA helicase SUB2 OS=Debaryomy...  289     7e-89 
sp|A6RW79|PRP5_BOTFB Pre-mRNA-processing ATP-dependent RNA helica...  305     8e-89 
sp|A6RY31|DHH1_BOTFB ATP-dependent RNA helicase dhh1 OS=Botryotin...  292     8e-89 
sp|Q5QYF8|RHLB_IDILO ATP-dependent RNA helicase RhlB OS=Idiomarin...  288     8e-89 
sp|Q4IJH1|DBP3_GIBZE ATP-dependent RNA helicase DBP3 OS=Gibberell...  293     8e-89 
sp|Q9LFN6|RH56_ARATH DEAD-box ATP-dependent RNA helicase 56 OS=Ar...  288     9e-89 
sp|Q56XG6|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15 OS=Ar...  288     9e-89 
sp|A1CYG5|DBP5_NEOFI ATP-dependent RNA helicase dbp5 OS=Neosartor...  290     9e-89 
sp|A6R603|SUB2_AJECN ATP-dependent RNA helicase SUB2 OS=Ajellomyc...  288     9e-89 
sp|A3GFI4|IF4A_PICST ATP-dependent RNA helicase eIF4A OS=Scheffer...  287     9e-89 
sp|Q54KG1|DDX41_DICDI Probable ATP-dependent RNA helicase ddx41 O...  295     1e-88 
sp|Q5Z6G5|RH35B_ORYSJ DEAD-box ATP-dependent RNA helicase 35B OS=...  294     1e-88 
sp|A4QYM6|DRS1_PYRO7 ATP-dependent RNA helicase DRS1 OS=Pyricular...  298     1e-88 
sp|Q8L7S8|RH3_ARATH DEAD-box ATP-dependent RNA helicase 3, chloro...  297     2e-88 
sp|Q5ADL0|PRP5_CANAL Pre-mRNA-processing ATP-dependent RNA helica...  300     2e-88 
sp|A5E3W5|SUB2_LODEL ATP-dependent RNA helicase SUB2 OS=Lodderomy...  288     2e-88 
sp|Q9NQI0|DDX4_HUMAN Probable ATP-dependent RNA helicase DDX4 OS=...  296     2e-88 
sp|Q7S5D9|DHH1_NEUCR ATP-dependent RNA helicase dhh1 OS=Neurospor...  292     2e-88 
sp|A1SZG4|RHLB_PSYIN ATP-dependent RNA helicase RhlB OS=Psychromo...  287     2e-88 
sp|A3LRW2|DBP3_PICST ATP-dependent RNA helicase DBP3 OS=Scheffers...  290     2e-88 
sp|P0CQ98|PRP5_CRYNJ Pre-mRNA-processing ATP-dependent RNA helica...  303     2e-88 
sp|P0CQ99|PRP5_CRYNB Pre-mRNA-processing ATP-dependent RNA helica...  303     2e-88 
sp|Q4P9P3|DRS1_USTMA ATP-dependent RNA helicase DRS1 OS=Ustilago ...  300     2e-88 
sp|Q10MH8|RH24_ORYSJ DEAD-box ATP-dependent RNA helicase 24 OS=Or...  297     3e-88 
sp|Q4PFD9|PRP5_USTMA Pre-mRNA-processing ATP-dependent RNA helica...  304     3e-88 
sp|O13792|SUB2_SCHPO ATP-dependent RNA helicase uap56 OS=Schizosa...  287     3e-88 
sp|A6RJA2|PRP28_BOTFB Pre-mRNA-splicing ATP-dependent RNA helicas...  297     3e-88 
sp|Q2UH00|PRP28_ASPOR Pre-mRNA-splicing ATP-dependent RNA helicas...  297     3e-88 
sp|Q4WIN6|DBP5_ASPFU ATP-dependent RNA helicase dbp5 OS=Aspergill...  288     3e-88 
sp|Q64060|DDX4_RAT Probable ATP-dependent RNA helicase DDX4 OS=Ra...  295     3e-88 
sp|Q75BL8|IF4A_EREGS ATP-dependent RNA helicase eIF4A OS=Eremothe...  285     4e-88 
sp|A5UDI1|RHLB_HAEIE ATP-dependent RNA helicase RhlB OS=Haemophil...  286     4e-88 
sp|Q61496|DDX4_MOUSE ATP-dependent RNA helicase DDX4 OS=Mus muscu...  295     5e-88 
sp|Q4I7F9|PRP28_GIBZE Pre-mRNA-splicing ATP-dependent RNA helicas...  295     5e-88 
sp|A4RN46|PRP5_PYRO7 Pre-mRNA-processing ATP-dependent RNA helica...  301     5e-88 
sp|Q3MSQ8|DDX4_PELLE Probable ATP-dependent RNA helicase DDX4 OS=...  295     6e-88 
sp|Q6CDV4|IF4A_YARLI ATP-dependent RNA helicase eIF4A OS=Yarrowia...  285     6e-88 
sp|Q2HAD8|PRP5_CHAGB Pre-mRNA-processing ATP-dependent RNA helica...  302     6e-88 
sp|Q5BCU6|PRP28_EMENI Pre-mRNA-splicing ATP-dependent RNA helicas...  296     7e-88 
sp|A7EGG4|PRP28_SCLS1 Pre-mRNA-splicing ATP-dependent RNA helicas...  297     8e-88 
sp|P0CQ80|DHH1_CRYNJ ATP-dependent RNA helicase DHH1 OS=Cryptococ...  292     8e-88 
sp|P0CQ81|DHH1_CRYNB ATP-dependent RNA helicase DHH1 OS=Cryptococ...  292     8e-88 
sp|Q4R5S7|DDX4_MACFA Probable ATP-dependent RNA helicase DDX4 OS=...  294     8e-88 
sp|Q7ZY47|DDX42_XENLA ATP-dependent RNA helicase DDX42 OS=Xenopus...  299     9e-88 
sp|Q6CH90|SUB2_YARLI ATP-dependent RNA helicase SUB2 OS=Yarrowia ...  286     9e-88 
sp|A1CHL3|PRP28_ASPCL Pre-mRNA-splicing ATP-dependent RNA helicas...  296     1e-87 
sp|Q5W5U4|DDX4_BOVIN Probable ATP-dependent RNA helicase DDX4 OS=...  294     1e-87 
sp|Q5WR10|DX39B_CANLF Spliceosome RNA helicase DDX39B OS=Canis lu...  285     1e-87 
sp|Q62780|DDX46_RAT Probable ATP-dependent RNA helicase DDX46 OS=...  300     1e-87 
sp|Q5RE47|DX39B_PONAB Spliceosome RNA helicase DDX39B OS=Pongo ab...  285     1e-87 
sp|Q29024|DX39B_PIG Spliceosome RNA helicase DDX39B OS=Sus scrofa...  285     1e-87 
sp|P60024|DX39B_PANTR Spliceosome RNA helicase DDX39B OS=Pan trog...  285     1e-87 
sp|Q5TM17|DX39B_MACMU Spliceosome RNA helicase DDX39B OS=Macaca m...  285     1e-87 
sp|Q13838|DX39B_HUMAN Spliceosome RNA helicase DDX39B OS=Homo sap...  285     1e-87 
sp|Q58Z64|DHH1_CRYNH ATP-dependent RNA helicase VAD1 OS=Cryptococ...  291     1e-87 
sp|Q6C024|PRP28_YARLI Pre-mRNA-splicing ATP-dependent RNA helicas...  290     1e-87 
sp|Q810A7|DDX42_MOUSE ATP-dependent RNA helicase DDX42 OS=Mus mus...  298     1e-87 
sp|Q7L014|DDX46_HUMAN Probable ATP-dependent RNA helicase DDX46 O...  300     1e-87 
sp|O00148|DX39A_HUMAN ATP-dependent RNA helicase DDX39A OS=Homo s...  285     1e-87 
sp|Q0UWC8|PRP28_PHANO Pre-mRNA-splicing ATP-dependent RNA helicas...  294     1e-87 
sp|Q63413|DX39B_RAT Spliceosome RNA helicase Ddx39b OS=Rattus nor...  285     1e-87 
sp|Q9Z1N5|DX39B_MOUSE Spliceosome RNA helicase Ddx39b OS=Mus musc...  285     1e-87 
sp|Q6BZ77|DBP3_DEBHA ATP-dependent RNA helicase DBP3 OS=Debaryomy...  288     2e-87 
sp|A7TJM9|DRS1_VANPO ATP-dependent RNA helicase DRS1 OS=Vanderwal...  294     2e-87 
sp|Q569Z5|DDX46_MOUSE Probable ATP-dependent RNA helicase DDX46 O...  300     2e-87 
sp|Q4TVV3|DDX46_DANRE Probable ATP-dependent RNA helicase DDX46 O...  300     2e-87 
sp|Q9CJS1|RHLB_PASMU ATP-dependent RNA helicase RhlB OS=Pasteurel...  285     2e-87 
sp|A7TGW7|DBP10_VANPO ATP-dependent RNA helicase DBP10 OS=Vanderw...  299     2e-87 
sp|Q75F95|DRS1_EREGS ATP-dependent RNA helicase DRS1 OS=Eremothec...  294     2e-87 
sp|Q3T147|DX39B_BOVIN Spliceosome RNA helicase DDX39B OS=Bos taur...  285     2e-87 
sp|Q86XP3|DDX42_HUMAN ATP-dependent RNA helicase DDX42 OS=Homo sa...  298     2e-87 
sp|D0PV95|DDX3_CAEEL ATP-dependent RNA helicase laf-1 OS=Caenorha...  293     2e-87 
sp|Q6CXT4|IF4A_KLULA ATP-dependent RNA helicase eIF4A OS=Kluyvero...  283     3e-87 
sp|A7ESL7|DBP10_SCLS1 ATP-dependent RNA helicase dbp10 OS=Sclerot...  297     3e-87 
sp|Q6GWX0|DDX4_PIG Probable ATP-dependent RNA helicase DDX4 OS=Su...  293     4e-87 
sp|Q879Y6|RHLB_XYLFT ATP-dependent RNA helicase RhlB OS=Xylella f...  288     4e-87 
sp|Q6C0X2|DHH1_YARLI ATP-dependent RNA helicase DHH1 OS=Yarrowia ...  287     4e-87 
sp|Q0TXZ2|SUB2_PHANO ATP-dependent RNA helicase SUB2 OS=Phaeospha...  284     5e-87 
sp|Q6C7X8|DBP10_YARLI ATP-dependent RNA helicase DBP10 OS=Yarrowi...  297     5e-87 
sp|Q757U8|DBP10_EREGS ATP-dependent RNA helicase DBP10 OS=Eremoth...  297     5e-87 
sp|Q09181|DHH1_SCHPO Putative ATP-dependent RNA helicase ste13 OS...  285     5e-87 
sp|Q5F485|DDX42_CHICK ATP-dependent RNA helicase DDX42 OS=Gallus ...  297     5e-87 
sp|Q5R6D8|DDX46_PONAB Probable ATP-dependent RNA helicase DDX46 O...  298     6e-87 
sp|P23128|DDX6_DROME ATP-dependent RNA helicase me31b OS=Drosophi...  284     7e-87 
sp|Q7S5R1|DBP3_NEUCR ATP-dependent RNA helicase dbp-3 OS=Neurospo...  289     7e-87 
sp|A6SFV4|DBP8_BOTFB ATP-dependent RNA helicase dbp8 OS=Botryotin...  287     8e-87 
sp|Q0CLX0|PRP28_ASPTN Pre-mRNA-splicing ATP-dependent RNA helicas...  293     8e-87 
sp|Q54TJ4|DDX27_DICDI Probable ATP-dependent RNA helicase ddx27 O...  293     8e-87 
sp|A2QIL2|PRP28_ASPNC Pre-mRNA-splicing ATP-dependent RNA helicas...  293     9e-87 
sp|Q553B1|DDX46_DICDI ATP-dependent RNA helicase ddx46 OS=Dictyos...  300     9e-87 
sp|Q6CT49|PRP28_KLULA Pre-mRNA-splicing ATP-dependent RNA helicas...  287     9e-87 
sp|Q40466|IF413_TOBAC Eukaryotic initiation factor 4A-13 (Fragmen...  280     9e-87 
sp|Q5R7D1|DDX42_PONAB ATP-dependent RNA helicase DDX42 OS=Pongo a...  296     1e-86 
sp|A3LSN3|DRS1_PICST ATP-dependent RNA helicase DRS1 OS=Scheffers...  292     1e-86 
sp|Q0IHV9|DDX6_XENTR Probable ATP-dependent RNA helicase ddx6 OS=...  284     1e-86 
sp|Q5ZHZ0|DX39B_CHICK Spliceosome RNA helicase DDX39B OS=Gallus g...  282     1e-86 
sp|Q8VDW0|DX39A_MOUSE ATP-dependent RNA helicase DDX39A OS=Mus mu...  282     1e-86 
sp|Q6BLU9|PRP28_DEBHA Pre-mRNA-splicing ATP-dependent RNA helicas...  287     1e-86 
sp|Q1DZK8|DBP3_COCIM ATP-dependent RNA helicase DBP3 OS=Coccidioi...  285     2e-86 
sp|P54824|DDX6_XENLA ATP-dependent RNA helicase ddx6 OS=Xenopus l...  284     2e-86 
sp|Q5U216|DX39A_RAT ATP-dependent RNA helicase DDX39A OS=Rattus n...  282     2e-86 
sp|Q5ASK8|SUB2_EMENI ATP-dependent RNA helicase sub2 OS=Emericell...  282     2e-86 
sp|A3LZT3|DBP10_PICST ATP-dependent RNA helicase DBP10 OS=Scheffe...  295     3e-86 
sp|Q4JG17|VASAL_PENVA Probable ATP-dependent RNA helicase vasa-li...  290     3e-86 
sp|Q759L6|SUB2_EREGS ATP-dependent RNA helicase SUB2 OS=Eremothec...  282     3e-86 
sp|A5E0U9|DBP8_LODEL ATP-dependent RNA helicase DBP8 OS=Lodderomy...  282     3e-86 
sp|A5DU73|PRP28_LODEL Pre-mRNA-splicing ATP-dependent RNA helicas...  287     4e-86 
sp|P54823|DDX6_MOUSE Probable ATP-dependent RNA helicase DDX6 OS=...  283     4e-86 
sp|Q6FQQ6|IF4A_CANGA ATP-dependent RNA helicase eIF4A OS=Candida ...  280     5e-86 
sp|Q59PR3|DBP8_CANAL ATP-dependent RNA helicase DBP8 OS=Candida a...  282     5e-86 
sp|Q91372|DDX4_XENLA Probable ATP-dependent RNA helicase DDX4 OS=...  289     5e-86 
sp|P0C2N8|DRS1_NEUCR ATP-dependent RNA helicase drs1 OS=Neurospor...  292     5e-86 
sp|A1CFV3|DBP5_ASPCL ATP-dependent RNA helicase dbp5 OS=Aspergill...  283     6e-86 
sp|Q6FNA2|DBP10_CANGA ATP-dependent RNA helicase DBP10 OS=Candida...  295     6e-86 
sp|A5DLR3|DBP10_PICGU ATP-dependent RNA helicase DBP10 OS=Meyeroz...  293     7e-86 
sp|A5DAC8|DBP3_PICGU ATP-dependent RNA helicase DBP3 OS=Meyerozym...  284     7e-86 
sp|Q6CM95|SUB2_KLULA ATP-dependent RNA helicase SUB2 OS=Kluyverom...  281     8e-86 
sp|Q0I1X0|RHLB_HISS1 ATP-dependent RNA helicase RhlB OS=Histophil...  280     8e-86 
sp|B0UUZ9|RHLB_HISS2 ATP-dependent RNA helicase RhlB OS=Histophil...  280     8e-86 
sp|P26196|DDX6_HUMAN Probable ATP-dependent RNA helicase DDX6 OS=...  282     8e-86 
sp|Q2GUI4|DBP3_CHAGB ATP-dependent RNA helicase DBP3 OS=Chaetomiu...  285     9e-86 
sp|A1D6X9|DBP8_NEOFI ATP-dependent RNA helicase dbp8 OS=Neosartor...  283     1e-85 
sp|A5DBI5|DBP5_PICGU ATP-dependent RNA helicase DBP5 OS=Meyerozym...  282     1e-85 
sp|Q4WRV2|DRS1_ASPFU ATP-dependent RNA helicase drs1 OS=Aspergill...  291     1e-85 
sp|Q6CCZ1|PRP5_YARLI Pre-mRNA-processing ATP-dependent RNA helica...  294     1e-85 
sp|Q6CIR0|DBP10_KLULA ATP-dependent RNA helicase DBP10 OS=Kluyver...  294     1e-85 
sp|Q6FM43|PRP28_CANGA Pre-mRNA-splicing ATP-dependent RNA helicas...  285     1e-85 
sp|A5DF03|PRP28_PICGU Pre-mRNA-splicing ATP-dependent RNA helicas...  285     1e-85 
sp|Q8P4D4|RHLB_XANCP ATP-dependent RNA helicase RhlB OS=Xanthomon...  284     1e-85 
sp|B0RWT6|RHLB_XANCB ATP-dependent RNA helicase RhlB OS=Xanthomon...  284     1e-85 
sp|Q4UPY5|RHLB_XANC8 ATP-dependent RNA helicase RhlB OS=Xanthomon...  284     1e-85 
sp|Q5ZKB9|DDX6_CHICK Probable ATP-dependent RNA helicase DDX6 OS=...  282     1e-85 
sp|Q9WTM2|DDX6_CAVPO Probable ATP-dependent RNA helicase DDX6 (Fr...  281     1e-85 
sp|Q54Y81|DDX23_DICDI ATP-dependent RNA helicase ddx23 OS=Dictyos...  291     2e-85 
sp|Q3BNH8|RHLB_XANC5 ATP-dependent RNA helicase RhlB OS=Xanthomon...  284     2e-85 
sp|Q8PFZ3|RHLB_XANAC ATP-dependent RNA helicase RhlB OS=Xanthomon...  284     2e-85 
sp|Q5GUR8|RHLB_XANOR ATP-dependent RNA helicase RhlB OS=Xanthomon...  284     2e-85 
sp|P23394|PRP28_YEAST Pre-mRNA-splicing ATP-dependent RNA helicas...  284     2e-85 
sp|Q5ANB2|DBP10_CANAL ATP-dependent RNA helicase DBP10 OS=Candida...  292     2e-85 
sp|A7TK55|IF4A_VANPO ATP-dependent RNA helicase eIF4A OS=Vanderwa...  278     2e-85 
sp|Q25225|IF4A_LEIBR Probable eukaryotic initiation factor 4A OS=...  278     2e-85 
sp|A5AA68|DBP8_ASPNC ATP-dependent RNA helicase dbp8 OS=Aspergill...  282     3e-85 
sp|P10081|IF4A_YEAST ATP-dependent RNA helicase eIF4A OS=Saccharo...  278     3e-85 
sp|A6ZQJ1|IF4A_YEAS7 ATP-dependent RNA helicase eIF4A OS=Saccharo...  278     3e-85 
sp|Q9PA24|RHLB_XYLFA ATP-dependent RNA helicase RhlB OS=Xylella f...  283     3e-85 
sp|O62591|IF4A_LEIMA Probable eukaryotic initiation factor 4A OS=...  278     3e-85 
sp|A4HRK0|IF4A_LEIIN Probable eukaryotic initiation factor 4A OS=...  278     3e-85 
sp|Q9HGM5|DBP8_SCHPO ATP-dependent RNA helicase dbp8 OS=Schizosac...  280     3e-85 
sp|A5DLE0|DBP8_PICGU ATP-dependent RNA helicase DBP8 OS=Meyerozym...  279     3e-85 
sp|P20449|DBP5_YEAST ATP-dependent RNA helicase DBP5 OS=Saccharom...  280     3e-85 
sp|A6ZNQ1|DBP5_YEAS7 ATP-dependent RNA helicase DBP5 OS=Saccharom...  280     3e-85 
sp|Q9V3C0|DDX41_DROME ATP-dependent RNA helicase abstrakt OS=Dros...  285     4e-85 
sp|Q4WXW1|DBP8_ASPFU ATP-dependent RNA helicase dbp8 OS=Aspergill...  282     4e-85 
sp|Q4I662|DBP8_GIBZE ATP-dependent RNA helicase DBP8 OS=Gibberell...  282     4e-85 
sp|Q6FQZ0|DBP8_CANGA ATP-dependent RNA helicase DBP8 OS=Candida g...  279     4e-85 
sp|A6ZXP4|SUB2_YEAS7 ATP-dependent RNA helicase SUB2 OS=Saccharom...  279     4e-85 
sp|Q6C799|DBP8_YARLI ATP-dependent RNA helicase DBP8 OS=Yarrowia ...  279     5e-85 
sp|P44922|RHLB_HAEIN ATP-dependent RNA helicase RhlB OS=Haemophil...  278     5e-85 
sp|Q07478|SUB2_YEAST ATP-dependent RNA helicase SUB2 OS=Saccharom...  279     5e-85 
sp|Q6BGU8|DBP8_DEBHA ATP-dependent RNA helicase DBP8 OS=Debaryomy...  278     6e-85 
sp|O01836|GLH3_CAEEL ATP-dependent RNA helicase glh-3 OS=Caenorha...  287     6e-85 
sp|Q54IV3|DDX42_DICDI Probable ATP-dependent RNA helicase ddx42 O...  292     7e-85 
sp|Q12389|DBP10_YEAST ATP-dependent RNA helicase DBP10 OS=Sacchar...  292     7e-85 
sp|A7TK63|DBP8_VANPO ATP-dependent RNA helicase DBP8 OS=Vanderwal...  278     8e-85 
sp|Q0U8V9|DBP8_PHANO ATP-dependent RNA helicase DBP8 OS=Phaeospha...  280     8e-85 
sp|A7E436|DBP8_SCLS1 ATP-dependent RNA helicase dbp8 OS=Sclerotin...  281     8e-85 
sp|P0CQ96|SUB2_CRYNJ ATP-dependent RNA helicase SUB2 OS=Cryptococ...  278     8e-85 
sp|P0CQ97|SUB2_CRYNB ATP-dependent RNA helicase SUB2 OS=Cryptococ...  278     8e-85 
sp|A1CKJ0|DBP8_ASPCL ATP-dependent RNA helicase dbp8 OS=Aspergill...  281     8e-85 
sp|A5DZT7|DBP10_LODEL ATP-dependent RNA helicase DBP10 OS=Loddero...  291     1e-84 
sp|Q2UKX3|DBP8_ASPOR ATP-dependent RNA helicase dbp8 OS=Aspergill...  278     1e-84 
sp|A2QUY7|DBP5_ASPNC ATP-dependent RNA helicase dbp5 OS=Aspergill...  279     1e-84 
sp|Q5ACK7|DRS1_CANAL ATP-dependent RNA helicase DRS1 OS=Candida a...  283     1e-84 
sp|A6ZXU0|DBP10_YEAS7 ATP-dependent RNA helicase DBP10 OS=Sacchar...  292     1e-84 
sp|A7TJT7|SUB22_VANPO ATP-dependent RNA helicase SUB2-2 OS=Vander...  278     1e-84 
sp|Q0INC5|RH28_ORYSJ DEAD-box ATP-dependent RNA helicase 28 OS=Or...  288     1e-84 
sp|Q9Y6V7|DDX49_HUMAN Probable ATP-dependent RNA helicase DDX49 O...  279     1e-84 
sp|Q6BML1|PRP5_DEBHA Pre-mRNA-processing ATP-dependent RNA helica...  290     2e-84 
sp|A1D1R8|DRS1_NEOFI ATP-dependent RNA helicase drs1 OS=Neosartor...  288     2e-84 
sp|Q18212|DX39B_CAEEL Spliceosome RNA helicase DDX39B homolog OS=...  277     2e-84 
sp|Q54CD8|DDX54_DICDI ATP-dependent RNA helicase ddx54 OS=Dictyos...  292     2e-84 
sp|Q6FL17|SUB2_CANGA ATP-dependent RNA helicase SUB2 OS=Candida g...  277     2e-84 
sp|A1A4H6|DDX27_BOVIN Probable ATP-dependent RNA helicase DDX27 O...  286     3e-84 
sp|Q9FZ92|RH44_ARATH Putative DEAD-box ATP-dependent RNA helicase...  282     3e-84 
sp|Q9ZRZ8|RH28_ARATH DEAD-box ATP-dependent RNA helicase 28 OS=Ar...  287     3e-84 
sp|Q75C39|DBP5_EREGS ATP-dependent RNA helicase DBP5 OS=Eremothec...  277     3e-84 
sp|A7TLA0|SUB21_VANPO ATP-dependent RNA helicase SUB2-1 OS=Vander...  277     3e-84 
sp|A5E6W6|RRP3_LODEL ATP-dependent rRNA helicase RRP3 OS=Lodderom...  278     3e-84 
sp|A3GH91|DBP5_PICST ATP-dependent RNA helicase DBP5 OS=Scheffers...  278     3e-84 
sp|Q6CJV1|DRS1_KLULA ATP-dependent RNA helicase DRS1 OS=Kluyverom...  285     4e-84 
sp|Q2UQI6|DRS1_ASPOR ATP-dependent RNA helicase drs1 OS=Aspergill...  287     4e-84 
sp|Q6FKN8|DBP5_CANGA ATP-dependent RNA helicase DBP5 OS=Candida g...  278     4e-84 
sp|A3LQ55|PRP5_PICST Pre-mRNA-processing ATP-dependent RNA helica...  288     5e-84 
sp|Q8SR63|RRP3_ENCCU ATP-dependent rRNA helicase RRP3 OS=Encephal...  275     5e-84 
sp|Q5B3H7|DBP8_EMENI ATP-dependent RNA helicase dbp8 OS=Emericell...  279     5e-84 
sp|Q96GQ7|DDX27_HUMAN Probable ATP-dependent RNA helicase DDX27 O...  286     5e-84 
sp|P21507|SRMB_ECOLI ATP-dependent RNA helicase SrmB OS=Escherich...  276     6e-84 
sp|A3LNL1|PRP28_PICST Pre-mRNA-splicing ATP-dependent RNA helicas...  277     6e-84 
sp|A5E058|PRP5_LODEL Pre-mRNA-processing ATP-dependent RNA helica...  289     8e-84 
sp|P0CQ88|PRP28_CRYNJ Pre-mRNA-splicing ATP-dependent RNA helicas...  283     1e-83 
sp|P0CQ89|PRP28_CRYNB Pre-mRNA-splicing ATP-dependent RNA helicas...  283     1e-83 
sp|A6RC50|DBP5_AJECN ATP-dependent RNA helicase DBP5 OS=Ajellomyc...  277     1e-83 
sp|Q6CXB7|HAS1_KLULA ATP-dependent RNA helicase HAS1 OS=Kluyverom...  277     2e-83 
sp|Q4FZF3|DDX49_MOUSE Probable ATP-dependent RNA helicase DDX49 O...  276     2e-83 
sp|Q6BL34|DBP10_DEBHA ATP-dependent RNA helicase DBP10 OS=Debaryo...  287     2e-83 
sp|Q921N6|DDX27_MOUSE Probable ATP-dependent RNA helicase DDX27 O...  283     2e-83 
sp|Q0V1Z7|DRS1_PHANO ATP-dependent RNA helicase DRS1 OS=Phaeospha...  284     2e-83 
sp|A5DZX2|DBP5_LODEL ATP-dependent RNA helicase DBP5 OS=Lodderomy...  277     2e-83 
sp|Q5AVM1|DBP5_EMENI ATP-dependent RNA helicase dbp5 OS=Emericell...  275     3e-83 
sp|A5DY34|DRS1_LODEL ATP-dependent RNA helicase DRS1 OS=Lodderomy...  281     5e-83 
sp|Q0CDT1|DBP5_ASPTN ATP-dependent RNA helicase dbp5 OS=Aspergill...  275     5e-83 
sp|Q5RFQ5|DDX6_PONAB Probable ATP-dependent RNA helicase DDX6 OS=...  275     5e-83 
sp|Q6BRE4|DBP5_DEBHA ATP-dependent RNA helicase DBP5 OS=Debaryomy...  275     6e-83 
sp|A1CNV8|DRS1_ASPCL ATP-dependent RNA helicase drs1 OS=Aspergill...  283     1e-82 

Sequences not found previously or not previously below threshold:



>sp|Q92499|DDX1_HUMAN ATP-dependent RNA helicase DDX1 OS=Homo 
sapiens OX=9606 GN=DDX1 PE=1 SV=2
Length=740

 Score = 992 bits (2565),  Expect = 0.0, Method: Composition-based stats.
 Identities = 740/740 (100%), Positives = 740/740 (100%), Gaps = 0/740 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
Sbjct  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120
            IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
Sbjct  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120

Query  121  GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD  180
            GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
Sbjct  121  GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD  180

Query  181  NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF  240
            NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF
Sbjct  181  NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF  240

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE  300
            NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE
Sbjct  241  NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE  300

Query  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN  360
            QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN
Sbjct  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN  360

Query  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
            LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
Sbjct  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420

Query  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480
            KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN
Sbjct  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480

Query  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540
            SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF
Sbjct  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540

Query  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600
            SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
Sbjct  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600

Query  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660
            HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS
Sbjct  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660

Query  661  EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEK  720
            EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEK
Sbjct  661  EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEK  720

Query  721  EAQTSFLHLGYLPNQLFRTF  740
            EAQTSFLHLGYLPNQLFRTF
Sbjct  721  EAQTSFLHLGYLPNQLFRTF  740


>sp|Q4R7L5|DDX1_MACFA ATP-dependent RNA helicase DDX1 OS=Macaca 
fascicularis OX=9541 GN=DDX1 PE=2 SV=1
Length=740

 Score = 991 bits (2563),  Expect = 0.0, Method: Composition-based stats.
 Identities = 737/740 (99%), Positives = 740/740 (100%), Gaps = 0/740 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
Sbjct  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120
            IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
Sbjct  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120

Query  121  GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD  180
            GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
Sbjct  121  GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD  180

Query  181  NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF  240
            NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF
Sbjct  181  NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF  240

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE  300
            NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE
Sbjct  241  NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE  300

Query  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN  360
            QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN
Sbjct  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN  360

Query  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
            LSQVRFLVLDEADGLL+QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
Sbjct  361  LSQVRFLVLDEADGLLTQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420

Query  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480
            KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK+HIRTDDVHAKDNTRPGAN
Sbjct  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKNHIRTDDVHAKDNTRPGAN  480

Query  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540
            SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF+QQGGGPDKKGHQF
Sbjct  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPDKKGHQF  540

Query  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600
            SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
Sbjct  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600

Query  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660
            HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS
Sbjct  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660

Query  661  EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEK  720
            EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEK
Sbjct  661  EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEK  720

Query  721  EAQTSFLHLGYLPNQLFRTF  740
            EAQTSFLHLGYLPNQLFRTF
Sbjct  721  EAQTSFLHLGYLPNQLFRTF  740


>sp|Q5NVJ8|DDX1_PONAB ATP-dependent RNA helicase DDX1 OS=Pongo 
abelii OX=9601 GN=DDX1 PE=2 SV=1
Length=740

 Score = 990 bits (2558),  Expect = 0.0, Method: Composition-based stats.
 Identities = 738/739 (99%), Positives = 738/739 (99%), Gaps = 0/739 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
Sbjct  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120
            IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
Sbjct  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120

Query  121  GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD  180
            GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
Sbjct  121  GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD  180

Query  181  NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF  240
            NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF
Sbjct  181  NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF  240

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE  300
            NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE
Sbjct  241  NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE  300

Query  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN  360
            QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN
Sbjct  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN  360

Query  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
            LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
Sbjct  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420

Query  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480
            KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN
Sbjct  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480

Query  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540
            SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF
Sbjct  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540

Query  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600
            SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
Sbjct  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600

Query  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660
            HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS
Sbjct  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660

Query  661  EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEK  720
            EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQ LAALEK
Sbjct  661  EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQGLAALEK  720

Query  721  EAQTSFLHLGYLPNQLFRT  739
            EAQTSFLHLGYLPNQLFRT
Sbjct  721  EAQTSFLHLGYLPNQLFRT  739


>sp|Q641Y8|DDX1_RAT ATP-dependent RNA helicase DDX1 OS=Rattus 
norvegicus OX=10116 GN=Ddx1 PE=1 SV=1
Length=740

 Score = 984 bits (2544),  Expect = 0.0, Method: Composition-based stats.
 Identities = 723/740 (98%), Positives = 737/740 (99%), Gaps = 0/740 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
Sbjct  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120
            IQIVYETLKDQQEGKKGK TIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
Sbjct  61   IQIVYETLKDQQEGKKGKATIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120

Query  121  GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD  180
            GCRAT+GL++GKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
Sbjct  121  GCRATRGLLRGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD  180

Query  181  NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF  240
            NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIP H+KNQALFPACVLKNAELKF
Sbjct  181  NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPAHIKNQALFPACVLKNAELKF  240

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE  300
            NFGEEEFKFPPKDGFVALSKAPD Y+VKSQH+GNAQV+QTKFLPNAPKALIVEPSRELAE
Sbjct  241  NFGEEEFKFPPKDGFVALSKAPDSYVVKSQHTGNAQVSQTKFLPNAPKALIVEPSRELAE  300

Query  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN  360
            QTLNN+KQFKKYIDNPKLRELLIIGGVAARDQLSVL+NGVDIVVGTPGRLDDLVSTGKLN
Sbjct  301  QTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLDNGVDIVVGTPGRLDDLVSTGKLN  360

Query  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
            LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ+TSDGKRLQVIVCSATLHSFDVKKLSE
Sbjct  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQITSDGKRLQVIVCSATLHSFDVKKLSE  420

Query  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480
            KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK+HIRTDDVHAKDNTRPGAN
Sbjct  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKNHIRTDDVHAKDNTRPGAN  480

Query  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540
            SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF+QQGGGPDKKGHQF
Sbjct  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPDKKGHQF  540

Query  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600
            SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
Sbjct  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600

Query  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660
            HRIGRVGRAERMGLAISLVATEKEKVWYHVCS+RGKGCYNTRLKEDGGCTIWYNEMQLLS
Sbjct  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSNRGKGCYNTRLKEDGGCTIWYNEMQLLS  660

Query  661  EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEK  720
            EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGG+YKGHVDILAPTVQELAALEK
Sbjct  661  EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGNYKGHVDILAPTVQELAALEK  720

Query  721  EAQTSFLHLGYLPNQLFRTF  740
            EAQTSFLHLGYLPNQLFRTF
Sbjct  721  EAQTSFLHLGYLPNQLFRTF  740


>sp|Q91VR5|DDX1_MOUSE ATP-dependent RNA helicase DDX1 OS=Mus musculus 
OX=10090 GN=Ddx1 PE=1 SV=1
Length=740

 Score = 984 bits (2543),  Expect = 0.0, Method: Composition-based stats.
 Identities = 722/740 (98%), Positives = 736/740 (99%), Gaps = 0/740 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
Sbjct  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120
            IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
Sbjct  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120

Query  121  GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD  180
            GCR T+GL+KGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
Sbjct  121  GCRGTRGLLKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD  180

Query  181  NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF  240
            NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIP H+KNQALFPACVLKNAELKF
Sbjct  181  NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPAHIKNQALFPACVLKNAELKF  240

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE  300
            NFGEEEFKFPPKDGFVALSKAPD YIVKSQH+GNAQV+QTKFLPNAPKALIVEPSRELAE
Sbjct  241  NFGEEEFKFPPKDGFVALSKAPDNYIVKSQHTGNAQVSQTKFLPNAPKALIVEPSRELAE  300

Query  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN  360
            QTLNN+KQFKKYIDNPKLRELLIIGGVAARDQLSVL+NGVDIVVGTPGRLDDLVSTGKLN
Sbjct  301  QTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLDNGVDIVVGTPGRLDDLVSTGKLN  360

Query  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
            LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ+T DGKRLQVIVCSATLHSFDVKKLSE
Sbjct  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQITCDGKRLQVIVCSATLHSFDVKKLSE  420

Query  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480
            KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTD+LWERLGK+HIRTDDVHAKDNTRPGAN
Sbjct  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDKLWERLGKNHIRTDDVHAKDNTRPGAN  480

Query  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540
            SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF+QQGGGPDKKGHQF
Sbjct  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPDKKGHQF  540

Query  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600
            SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
Sbjct  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600

Query  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660
            HRIGRVGRAERMGLAISLVATEKEKVWYHVCS+RGKGCYNTRLKEDGGCTIWYNEMQLLS
Sbjct  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSNRGKGCYNTRLKEDGGCTIWYNEMQLLS  660

Query  661  EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEK  720
            EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGG+YKGHVD+LAPTVQELAALEK
Sbjct  661  EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGNYKGHVDVLAPTVQELAALEK  720

Query  721  EAQTSFLHLGYLPNQLFRTF  740
            EAQTSFLHLGYLPNQLFRTF
Sbjct  721  EAQTSFLHLGYLPNQLFRTF  740


>sp|Q0IIK5|DDX1_BOVIN ATP-dependent RNA helicase DDX1 OS=Bos taurus 
OX=9913 GN=DDX1 PE=2 SV=1
Length=740

 Score = 981 bits (2536),  Expect = 0.0, Method: Composition-based stats.
 Identities = 720/740 (97%), Positives = 734/740 (99%), Gaps = 0/740 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
Sbjct  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120
            IQIVYETLKDQQEGKKGK TIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
Sbjct  61   IQIVYETLKDQQEGKKGKATIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120

Query  121  GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD  180
            GCRATKGL KGKHYYEVSCHDQGLCRVGWS+MQASLDLGTDKFGFGFGGTGKKSHNKQFD
Sbjct  121  GCRATKGLTKGKHYYEVSCHDQGLCRVGWSSMQASLDLGTDKFGFGFGGTGKKSHNKQFD  180

Query  181  NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF  240
            NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF
Sbjct  181  NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF  240

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE  300
            NFGEEEFKFPPKDGFVALSKAP+ ++VKSQH+G+AQV QTKFLPNAPKALIVEPSRELAE
Sbjct  241  NFGEEEFKFPPKDGFVALSKAPESFVVKSQHTGSAQVAQTKFLPNAPKALIVEPSRELAE  300

Query  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN  360
            QTLNN+KQFKKYIDNPKLRELLIIGGVAARDQLSVL+NGVDIVVGTPGRLDDLVSTGKLN
Sbjct  301  QTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLDNGVDIVVGTPGRLDDLVSTGKLN  360

Query  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
            LSQVRFLVLDEADGLLSQGYSDFINR+HNQIPQ+TSDGKRLQVIVCSATLHSFDVKKLSE
Sbjct  361  LSQVRFLVLDEADGLLSQGYSDFINRIHNQIPQITSDGKRLQVIVCSATLHSFDVKKLSE  420

Query  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480
            KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD+VHAKDNTRPGAN
Sbjct  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDEVHAKDNTRPGAN  480

Query  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540
            SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF+QQGGGPDKKGHQF
Sbjct  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPDKKGHQF  540

Query  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600
            SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
Sbjct  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600

Query  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660
            HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS
Sbjct  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660

Query  661  EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEK  720
            EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKR  GGG+YKGHVD+LAPTVQELAALEK
Sbjct  661  EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRTLGGGNYKGHVDVLAPTVQELAALEK  720

Query  721  EAQTSFLHLGYLPNQLFRTF  740
            EAQTSFLHLGYLPNQLFRTF
Sbjct  721  EAQTSFLHLGYLPNQLFRTF  740


>sp|Q90WU3|DDX1_CHICK ATP-dependent RNA helicase DDX1 OS=Gallus 
gallus OX=9031 GN=DDX1 PE=1 SV=1
Length=740

 Score = 979 bits (2532),  Expect = 0.0, Method: Composition-based stats.
 Identities = 690/740 (93%), Positives = 718/740 (97%), Gaps = 0/740 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
Sbjct  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120
            IQIVYETLKDQ EGKKGK TIKTG +VLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
Sbjct  61   IQIVYETLKDQMEGKKGKATIKTGGAVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120

Query  121  GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD  180
            GCRAT+G+ KGK+YYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
Sbjct  121  GCRATRGVTKGKYYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD  180

Query  181  NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF  240
            +YGEEFTMHDTIGCYLDIDKG +KFSKNGKDLGLAFE PPH++NQALF ACVLKNAELKF
Sbjct  181  SYGEEFTMHDTIGCYLDIDKGQIKFSKNGKDLGLAFEFPPHIRNQALFAACVLKNAELKF  240

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE  300
            NFGEE+FKFPPKDG++ L KAPDG +VKSQH+GNAQV QT+ LPNAPKALIVEPSRELAE
Sbjct  241  NFGEEDFKFPPKDGYIGLCKAPDGNVVKSQHTGNAQVVQTQNLPNAPKALIVEPSRELAE  300

Query  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN  360
            QTLNN+KQFKKYIDNPKLRELLIIGGVAARDQLSVLE GVDIVVGTPGRLDDLVSTGKLN
Sbjct  301  QTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLEQGVDIVVGTPGRLDDLVSTGKLN  360

Query  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
            LSQVRFLVLDEADGLL QGYSDFINR+H+QIPQ+TSDGKRLQVIVCSATLHSFDVKKLSE
Sbjct  361  LSQVRFLVLDEADGLLLQGYSDFINRIHSQIPQITSDGKRLQVIVCSATLHSFDVKKLSE  420

Query  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480
            KIMHFPTWVDLKGEDSVP+TVHHVVV VNPKTD+LWERLGK+HIRTD+VHAKDNT PGAN
Sbjct  421  KIMHFPTWVDLKGEDSVPETVHHVVVIVNPKTDKLWERLGKNHIRTDEVHAKDNTLPGAN  480

Query  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540
            +PEMWSEAIKILKGEY VRAIKEHKMDQAIIFCRTKIDCDN+EQYFIQQGGGPD+KGHQF
Sbjct  481  TPEMWSEAIKILKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDRKGHQF  540

Query  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600
            SCVCLHGDRKP ERKQNLERFK+GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
Sbjct  541  SCVCLHGDRKPQERKQNLERFKRGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600

Query  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660
            HRIGRVGRAERMGLAISLVA EKEKVWYHVCSSRGKGCYNTRLKE+GGCTIWYNEMQLL 
Sbjct  601  HRIGRVGRAERMGLAISLVAKEKEKVWYHVCSSRGKGCYNTRLKEEGGCTIWYNEMQLLG  660

Query  661  EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEK  720
            EIEEHLNCTISQVEPDIKVPVD+FDGKVTYGQKRA GGG YKGHVDILAPTVQELAALEK
Sbjct  661  EIEEHLNCTISQVEPDIKVPVDDFDGKVTYGQKRALGGGLYKGHVDILAPTVQELAALEK  720

Query  721  EAQTSFLHLGYLPNQLFRTF  740
            EAQTSFLHLGYLPNQLFRTF
Sbjct  721  EAQTSFLHLGYLPNQLFRTF  740


>sp|Q5XH91|DDX1_XENTR ATP-dependent RNA helicase DDX1 OS=Xenopus 
tropicalis OX=8364 GN=ddx1 PE=2 SV=1
Length=740

 Score = 947 bits (2447),  Expect = 0.0, Method: Composition-based stats.
 Identities = 668/740 (90%), Positives = 713/740 (96%), Gaps = 0/740 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            MAAFSEMGVM EIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
Sbjct  1    MAAFSEMGVMAEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120
            IQIVYETLKDQQEGKKGKT++KTG++VLNKWQMNPYDRGS+FAIGSDGLCCQSRE+KEWH
Sbjct  61   IQIVYETLKDQQEGKKGKTSVKTGSTVLNKWQMNPYDRGSSFAIGSDGLCCQSREIKEWH  120

Query  121  GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD  180
            GCR+T+G+ KGK+YYEVSCHDQGLCRVGWST+QASLDLGTDKFGFGFGGTGKKSHNKQFD
Sbjct  121  GCRSTRGVNKGKYYYEVSCHDQGLCRVGWSTLQASLDLGTDKFGFGFGGTGKKSHNKQFD  180

Query  181  NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF  240
            NYGEEFTMHDTIGCY+DID G VK+SKNGKDLGLAF+IP H+KNQA+F +CVLKNAELKF
Sbjct  181  NYGEEFTMHDTIGCYIDIDNGTVKYSKNGKDLGLAFQIPAHLKNQAVFASCVLKNAELKF  240

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE  300
            NFGEE+FKFPPKDGFVALSKAPDG++VKSQ++G+AQV+Q K LPNAPKALI+EPSRELAE
Sbjct  241  NFGEEDFKFPPKDGFVALSKAPDGHVVKSQNTGSAQVSQAKNLPNAPKALIIEPSRELAE  300

Query  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN  360
            QTLNN+KQFKKY+D+PKLRELLIIGGVAA++QL++LENGVDIVVGTPGR+DDL+STGKLN
Sbjct  301  QTLNNVKQFKKYVDSPKLRELLIIGGVAAKEQLTLLENGVDIVVGTPGRIDDLISTGKLN  360

Query  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
            LSQVRFLVLDEADGLLSQGYSDFINR+H QIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
Sbjct  361  LSQVRFLVLDEADGLLSQGYSDFINRIHGQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420

Query  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480
            KIMHFPTWVDLKGEDSVP+TVHHVVVPVNPK D+ WERLGK+HIRTD VH KDNTRPG N
Sbjct  421  KIMHFPTWVDLKGEDSVPETVHHVVVPVNPKKDKQWERLGKNHIRTDGVHDKDNTRPGGN  480

Query  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540
            S EMWSEAIK+LKGEY VRAIKEHKMDQAIIFCRTK+DCDN+EQYFIQQGGGPDKKGHQF
Sbjct  481  SAEMWSEAIKVLKGEYTVRAIKEHKMDQAIIFCRTKLDCDNMEQYFIQQGGGPDKKGHQF  540

Query  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600
            SCVCLH DRKP ERK NLERFKK +VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
Sbjct  541  SCVCLHSDRKPQERKHNLERFKKCEVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600

Query  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660
            HRIGRVGRAERMGLAISLVA EKEKVWYHVCSSRGKGC+NTRLKEDGGCTIWYNE QLLS
Sbjct  601  HRIGRVGRAERMGLAISLVAAEKEKVWYHVCSSRGKGCHNTRLKEDGGCTIWYNETQLLS  660

Query  661  EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEK  720
            EIEEHL CTISQVEPDIKVP+DEFDGKV YGQ+RA GGG YKGHVDILAPTVQELAALEK
Sbjct  661  EIEEHLTCTISQVEPDIKVPLDEFDGKVVYGQRRATGGGLYKGHVDILAPTVQELAALEK  720

Query  721  EAQTSFLHLGYLPNQLFRTF  740
            EAQTSFLHLGYL NQLFRTF
Sbjct  721  EAQTSFLHLGYLSNQLFRTF  740


>sp|A2VD92|DDX1_XENLA ATP-dependent RNA helicase DDX1 OS=Xenopus 
laevis OX=8355 GN=ddx1 PE=2 SV=1
Length=740

 Score = 946 bits (2444),  Expect = 0.0, Method: Composition-based stats.
 Identities = 664/740 (90%), Positives = 711/740 (96%), Gaps = 0/740 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
Sbjct  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120
            IQIVYETLKDQQEGKKGK ++KTG++VLNKWQMNPYDRGSAFAIGSDGLCCQSRE+KEWH
Sbjct  61   IQIVYETLKDQQEGKKGKASVKTGSTVLNKWQMNPYDRGSAFAIGSDGLCCQSREIKEWH  120

Query  121  GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD  180
            GCR+T+G+ KGK+YYEVSCHDQGLCRVGWST+ ASLDLGTDKFGFGFGGTGKKSHNKQFD
Sbjct  121  GCRSTRGVNKGKYYYEVSCHDQGLCRVGWSTLSASLDLGTDKFGFGFGGTGKKSHNKQFD  180

Query  181  NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF  240
            NYGEEFTMHDTIGCYLDID   VKFSKNGKDLGLAF+IP HMKNQA F +CVLKNAELKF
Sbjct  181  NYGEEFTMHDTIGCYLDIDNSIVKFSKNGKDLGLAFQIPSHMKNQAFFTSCVLKNAELKF  240

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE  300
            NFGEE+FKFPPKDGFVALSKAPDG++VKSQ++G+AQV+QTK LPNAPKALI+EPSRELAE
Sbjct  241  NFGEEDFKFPPKDGFVALSKAPDGHVVKSQNTGSAQVSQTKSLPNAPKALIIEPSRELAE  300

Query  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN  360
            QTLNN+KQFKKY+DNPKLRELLIIGGVAA++QL++LENGVDIVVGTPGR+DDL+STGKL+
Sbjct  301  QTLNNVKQFKKYVDNPKLRELLIIGGVAAKEQLTILENGVDIVVGTPGRIDDLISTGKLS  360

Query  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
            LSQVRFLVLDEADGLLSQGYSDFINR++ QIPQ+TSDGKRLQVIVCSATLHSFDVKKLSE
Sbjct  361  LSQVRFLVLDEADGLLSQGYSDFINRIYGQIPQITSDGKRLQVIVCSATLHSFDVKKLSE  420

Query  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480
            KIMHFPTWVDLKGEDSVP+TVHHVVVPVNPK D+ WE+L K+HIRTD VH KDNTRPG N
Sbjct  421  KIMHFPTWVDLKGEDSVPETVHHVVVPVNPKKDKQWEKLAKNHIRTDGVHDKDNTRPGGN  480

Query  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540
            S E+WSEAIK+LKGEY VRAIKEHKMDQAIIFCRTK+DCDN+EQYFIQQGGGPDKKGHQF
Sbjct  481  SAEVWSEAIKVLKGEYIVRAIKEHKMDQAIIFCRTKLDCDNMEQYFIQQGGGPDKKGHQF  540

Query  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600
            SCVCLH DRKP ERK NLERFKK +VRFLICTDVAARGIDI GVPYVINVTLPDEKQNYV
Sbjct  541  SCVCLHSDRKPPERKHNLERFKKCEVRFLICTDVAARGIDIRGVPYVINVTLPDEKQNYV  600

Query  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660
            HRIGRVGRAERMGLAISLVA+EKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS
Sbjct  601  HRIGRVGRAERMGLAISLVASEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660

Query  661  EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEK  720
            EIEEHL CTISQVEPDIKVP+D+FDGKV YGQ+RA GGG YKGHVDILAPTVQELA+LEK
Sbjct  661  EIEEHLTCTISQVEPDIKVPLDDFDGKVVYGQRRATGGGLYKGHVDILAPTVQELASLEK  720

Query  721  EAQTSFLHLGYLPNQLFRTF  740
            EAQTSFLHLGYL NQLFR+F
Sbjct  721  EAQTSFLHLGYLSNQLFRSF  740


>sp|Q9VNV3|DDX1_DROME ATP-dependent RNA helicase Ddx1 OS=Drosophila 
melanogaster OX=7227 GN=Ddx1 PE=2 SV=1
Length=727

 Score = 770 bits (1988),  Expect = 0.0, Method: Composition-based stats.
 Identities = 433/731 (59%), Positives = 552/731 (76%), Gaps = 13/731 (2%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M AF E GV+PE+  A +E+DW LPTD+QAE+IPLILGGGDVLMAAETGSGKTGAF +P+
Sbjct  1    MTAFEEFGVLPELGMATDELDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120
            +QIV+ETL+D +EGK            +  W M+ +DRG+A A+  DGL CQSRE KEWH
Sbjct  61   LQIVWETLRDLEEGK--AGKGGAIGGAVTPWTMSFFDRGNALAVTPDGLRCQSREFKEWH  118

Query  121  GCRATKGLM-KGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQF  179
            GCRAT G+  KGK Y+E +  D+GLCRVGWST QA+LDLGT + GFGFGGTGKKS+N+QF
Sbjct  119  GCRATTGVRGKGKFYFEATVTDEGLCRVGWSTQQANLDLGTCRMGFGFGGTGKKSNNRQF  178

Query  180  DNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELK  239
            D+YGE F   D IGC LD+    V F+KNG++LG+AF +P ++  +  +PA VLKNAE++
Sbjct  179  DDYGEAFGKADVIGCLLDLKNQEVSFTKNGQNLGVAFRLPDNLAKETFYPAVVLKNAEMQ  238

Query  240  FNFGEEEFKFPPKDGFVALSKA-PDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSREL  298
            FNFG+ +FK+ P +GFV   +A P+           A     K  PNAP+A+I+EPSREL
Sbjct  239  FNFGKTDFKYAPGNGFVGACQAGPEHSKANPITGPAAGAPSAKPAPNAPQAIIMEPSREL  298

Query  299  AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGK  358
            AEQT N I++FK ++ NP++R LL+IGGV   +Q + L  G  IVVGTPGRL++++++G 
Sbjct  299  AEQTYNQIEKFKYHLSNPEVRSLLLIGGVRLEEQKAQLMQGTHIVVGTPGRLEEMINSGL  358

Query  359  LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKL  418
            + L+  RF VLDEAD LL QGY++ I+R+H QIP++TSDG+RLQ++VCSATLH+F+VKK+
Sbjct  359  VLLTHCRFFVLDEADALLKQGYTELIDRLHKQIPKITSDGRRLQMVVCSATLHAFEVKKM  418

Query  419  SEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPG  478
            +E++MHFPTWVDLKGED+VP+TVHHVV  V+P+ D  W+ L +  I TD VH +DN  PG
Sbjct  419  AERLMHFPTWVDLKGEDAVPETVHHVVCLVDPQMDTTWQSLRQP-IGTDGVHDRDNVHPG  477

Query  479  ANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGH  538
             +S E  S+A+K+LKGEY V AI +H MD+AIIFCRTK DCDNLE++  Q+G      G 
Sbjct  478  NHSKETLSQAVKLLKGEYCVHAIDKHNMDRAIIFCRTKQDCDNLERFLRQRG------GK  531

Query  539  QFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQN  598
             +SCVCLHGDRKP ERK+NLE FK+  V+FLICTDVAARG+DI G+P++INVTLPD+K N
Sbjct  532  HYSCVCLHGDRKPQERKENLEMFKRQQVKFLICTDVAARGLDITGLPFMINVTLPDDKTN  591

Query  599  YVHRIGRVGRAERMGLAISLVATEKEKVWYH--VCSSRGKGCYNTRLKEDGGCTIWYNEM  656
            YVHRIGRVGRAERMGLAISLVAT  EKVWYH   C SRG+ C NT L E  GC IWYNE 
Sbjct  592  YVHRIGRVGRAERMGLAISLVATVPEKVWYHGEWCKSRGRSCNNTNLTEVRGCCIWYNEP  651

Query  657  QLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELA  716
             LL+E+E+HLN TI QV+  + VPV++FDGKV YGQK    G  Y+ HV+ L PTV++L 
Sbjct  652  NLLAEVEDHLNITIQQVDKTMDVPVNDFDGKVVYGQKNLRTGSGYEDHVEQLVPTVRKLT  711

Query  717  ALEKEAQTSFL  727
             LE ++Q+ FL
Sbjct  712  ELELQSQSLFL  722


>sp|Q55CP6|DDX1_DICDI Probable ATP-dependent RNA helicase ddx1 
OS=Dictyostelium discoideum OX=44689 GN=ddx1 PE=3 SV=1
Length=765

 Score = 641 bits (1652),  Expect = 0.0, Method: Composition-based stats.
 Identities = 338/772 (44%), Positives = 464/772 (60%), Gaps = 58/772 (8%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M+AF ++GV+PEI +A+EE+DWLLPT IQ E+IPLILGGGDVL AAETGSGKTGAF++P+
Sbjct  1    MSAFEDLGVLPEIIKAIEELDWLLPTPIQTEAIPLILGGGDVLAAAETGSGKTGAFALPI  60

Query  61   IQIVYETLKDQQEGKKGKTT----------IKTGASVLNKWQMNPYDRGSAFAIGSDGLC  110
            +QI YETL  + E      T             G    +  +++  DR    A+  DGL 
Sbjct  61   LQITYETLNKKAEIPIIAPTNTSGEDGTSGGGGGGGGGDTIELDQIDRDKNMAV--DGLI  118

Query  111  CQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGT  170
            CQSR   +W G +ATKG+  GK YYE    D+GLCR+G++  ++S ++GTDKF +G+GGT
Sbjct  119  CQSRS-SDWCGIKATKGISSGKFYYESIVRDEGLCRIGFALKKSSRNIGTDKFSWGYGGT  177

Query  171  GKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPA  230
            GKKSH  +F +YG+ F  +D IGCY++ D+  + F+KNG+D G AF    + K    +PA
Sbjct  178  GKKSHESKFIDYGKPFGNNDVIGCYINFDEEIIGFTKNGQDFGEAFTF--NSKAGIFYPA  235

Query  231  CVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVT------------  278
             VLKNAE++FNFG +  K   K G+  +++A      ++    +                
Sbjct  236  LVLKNAEMEFNFGSKPMKHDLK-GYKPINQAELLIDQQTSTQIDNSKNNNNNNNKKGSGN  294

Query  279  ----------------QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
                                 P    +LI+EP+RELA+Q  + I  F KY+D+PK++  L
Sbjct  295  NKKNKGKDDDKMNDEDNNNKQPRKTLSLIIEPTRELADQAYSAILNFSKYLDSPKIQVSL  354

Query  323  IIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD  382
             IGG  +    + +E   DI++GTPGRL+ LV  G ++LS ++F VLDEAD L+    + 
Sbjct  355  CIGGEKSNGGRNKIEG--DIIIGTPGRLESLVKEGSIDLSSIKFFVLDEADQLIDDNLA-  411

Query  383  FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH  442
                + N I      G+ LQV+  SATLHS  V K  E+I   PTWVDLKG D +PD + 
Sbjct  412  ----IVNFIYNKLPIGQNLQVLFFSATLHSTKVIKFCEQITKNPTWVDLKGRDFIPDLIT  467

Query  443  HVVVPVNP-KTDRLW-ERLGKSHIRTDDVHAKDNTRPG-ANSPEMWSEAIKILKGEYAVR  499
            H  V  +P K + LW        IRTD VHA D  + G    PE  SEAIK+LK +  ++
Sbjct  468  HAYVKADPIKFESLWRNSENPLRIRTDGVHASDVQQFGKLKEPEQKSEAIKLLKAQLLLK  527

Query  500  AIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGG-PDKKGHQFSCVCLHGDRK-PHERKQN  557
             I+  KMDQAIIF RT++DCD++ Q+    GGG       +FS   LHG       RK N
Sbjct  528  CIQSFKMDQAIIFARTRLDCDHIHQFLKDAGGGNTSGLEGEFSSTVLHGGDNISRARKDN  587

Query  558  LERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAIS  617
            LE+F+ GDVRFLICTDVAARGIDI G+PY+IN TLP+  ++Y+HR+GRVGR++R+GLAIS
Sbjct  588  LEKFRNGDVRFLICTDVAARGIDIRGLPYMINYTLPESFEDYIHRVGRVGRSDRIGLAIS  647

Query  618  LVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDI  677
            LVA E+EKVWYH C  +GKGC+NT+L E+GGC IWY+E QL + I+E++     +++ D 
Sbjct  648  LVAYEQEKVWYHTCRDKGKGCHNTKLTENGGCCIWYDEPQLFTAIQENIGPI--ELDSDF  705

Query  678  KVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKEAQTSFLHL  729
            ++P D          K       YK H + L   V +L+ LE+  Q  +L L
Sbjct  706  QLPKDMKQLNFGGSTKLTGASADYKPHTEELRSRVLQLSQLEETIQIDYLTL  757


>sp|Q41741|IF4A_MAIZE Eukaryotic initiation factor 4A OS=Zea mays 
OX=4577 PE=2 SV=1
Length=410

 Score = 362 bits (930),  Expect = 1e-117, Method: Composition-based stats.
 Identities = 121/487 (25%), Positives = 203/487 (42%), Gaps = 95/487 (20%)

Query  166  GFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGL-------AFEI  218
            G    G +  +KQ+D   +E    D    Y D+ +    F   G    L        FE 
Sbjct  3    GLAPEGSQFDDKQYDKKMQEILTEDFFTSYDDVCE---SFDSMGLQENLLRGIYAYGFEK  59

Query  219  PPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVT  278
            P  ++ + + P C                      G   + +A  G   K+    +  + 
Sbjct  60   PSAIQQRGIVPFC---------------------KGLDVIQQAQSG-TGKTATFCSGILQ  97

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            Q  +     +AL++ P+RELA+Q    ++    Y+    ++    +GG + R+   +L +
Sbjct  98   QLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLG---VKVHACVGGTSVREDQRILAS  154

Query  339  GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
            GV +VVGTPGR+ D++    L    ++  VLDEAD +LS+G+ D I  +   +P      
Sbjct  155  GVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLP------  208

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER  458
             ++QV V SAT+   +  +++ K M+ P  + +K ++   + +    V ++ +  +L   
Sbjct  209  SKIQVGVFSATMPP-EALEITRKFMNKPVRILVKRDELTLEGIKQFYVNIDKEDWKL---  264

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
                                             L   Y   AI      Q++IF  T+  
Sbjct  265  -------------------------------DTLCDLYETLAIT-----QSVIFVNTRRK  288

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
             D L             +    +    HGD   + R   +  F+ G  R LI TD+ ARG
Sbjct  289  VDWLTDKM---------RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG  339

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGC  638
            ID+  V  VIN  LP + +NY+HRIGR GR  R G+AI+ V  + E++ + V     +  
Sbjct  340  IDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERIVFDV-----QRF  394

Query  639  YNTRLKE  645
            YN  ++E
Sbjct  395  YNVTVEE  401


 Score = 81.7 bits (200),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 34/70 (49%), Gaps = 0/70 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F  MG+   + + +    +  P+ IQ   I     G DV+  A++G+GKT  F   ++Q
Sbjct  38   SFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ  97

Query  63   IVYETLKDQQ  72
             +   L + Q
Sbjct  98   QLDYGLVECQ  107


>sp|Q2GWJ5|FAL1_CHAGB ATP-dependent RNA helicase FAL1 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=FAL1 PE=3 SV=1
Length=394

 Score = 358 bits (918),  Expect = 6e-116, Method: Composition-based stats.
 Identities = 114/429 (27%), Positives = 182/429 (42%), Gaps = 66/429 (15%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
            D  + F     +     F +  LK + L+  + +G E          V + K  D     
Sbjct  12   DEKIQFSTSKEVTVHPTFESMSLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQA  71

Query  269  SQHSGN------AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
               +G       + +          +AL++ P+RELA Q  + +     Y++   ++   
Sbjct  72   QSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALGDYMN---VQCHA  128

Query  323  IIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD  382
             IGG    + +  L+ G  IV GTPGR+ D++    L    ++ LVLDEAD LL+QG+ +
Sbjct  129  CIGGTNVGEDIRKLDYGQHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNQGFRE  188

Query  383  FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH  442
             I  ++  +P  T      QV+V SATL  +DV  ++ K M  P  + +K ++   + + 
Sbjct  189  QIYDVYRYLPPAT------QVVVVSATLP-YDVLDMTTKFMTDPVRILVKRDELTLEGLK  241

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
               + V  +  +                                     L   Y    I 
Sbjct  242  QYFIAVEKEDWKF----------------------------------DTLCDLYDTLTIT  267

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
                 QA+IFC T+   D L     +           F+   +HGD    ER   ++ F+
Sbjct  268  -----QAVIFCNTRRKVDWLTDKMREA---------NFTVSSMHGDMPQKERDSIMQDFR  313

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            +G+ R LI TDV ARGID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V +E
Sbjct  314  QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSE  373

Query  623  KEKVWYHVC  631
              ++   + 
Sbjct  374  DVRILRDIE  382


 Score = 91.7 bits (226),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 27/131 (21%), Positives = 52/131 (40%), Gaps = 2/131 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F  M +   + + +    +  P+ +Q+ +I  I  G D +  A++G+GKT  FSI ++Q
Sbjct  28   TFESMSLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQ  87

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA-IGSDGLCCQSREV-KEWH  120
            ++   +++ Q      T             +  Y      A IG   +    R++    H
Sbjct  88   VIDTAVRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQH  147

Query  121  GCRATKGLMKG  131
                T G +  
Sbjct  148  IVSGTPGRVAD  158


>sp|Q9P735|FAL1_NEUCR ATP-dependent RNA helicase fal-1 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=fal-1 PE=3 SV=2
Length=400

 Score = 357 bits (916),  Expect = 1e-115, Method: Composition-based stats.
 Identities = 117/443 (26%), Positives = 189/443 (43%), Gaps = 71/443 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
            D  + F     +     F +  LK + L+  + +G E          V + K  D     
Sbjct  11   DEKIQFSTSKEVTVHPTFESMSLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQA  70

Query  269  SQHSGN------AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
               +G       + +          +AL++ P+RELA Q  + +     Y++   ++   
Sbjct  71   QSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALGDYMN---VQCHA  127

Query  323  IIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD  382
             IGG    + +  L+ G  IV GTPGR+ D++    L    ++ LVLDEAD LL+QG+ +
Sbjct  128  CIGGTNVGEDIRKLDYGQHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNQGFRE  187

Query  383  FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH  442
             I  ++  +P  T      QV+V SATL  +DV  ++ K M  P  + +K ++   + + 
Sbjct  188  QIYDVYRYLPPAT------QVVVVSATLP-YDVLDMTTKFMTDPVRILVKRDELTLEGLK  240

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
               + V  +  +                                     L   Y    I 
Sbjct  241  QYFIAVEKEDWKF----------------------------------DTLCDLYDTLTIT  266

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
                 QA+IFC T+   D L     +           F+   +HGD    ER   ++ F+
Sbjct  267  -----QAVIFCNTRRKVDWLTDKMREA---------NFTVSSMHGDMPQKERDSIMQDFR  312

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            +G+ R LI TDV ARGID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V +E
Sbjct  313  QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSE  372

Query  623  KEKVWYHVCSSRGKGCYNTRLKE  645
              ++   +     +  Y+T++ E
Sbjct  373  DVRILRDI-----ELYYSTQIDE  390


 Score = 91.3 bits (225),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 27/131 (21%), Positives = 52/131 (40%), Gaps = 2/131 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F  M +   + + +    +  P+ +Q+ +I  I  G D +  A++G+GKT  FSI ++Q
Sbjct  27   TFESMSLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQ  86

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA-IGSDGLCCQSREV-KEWH  120
            ++   +++ Q      T             +  Y      A IG   +    R++    H
Sbjct  87   VIDTAVRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQH  146

Query  121  GCRATKGLMKG  131
                T G +  
Sbjct  147  IVSGTPGRVAD  157


>sp|Q4IAA0|FAL1_GIBZE ATP-dependent RNA helicase FAL1 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=FAL1 PE=3 SV=1
Length=401

 Score = 354 bits (909),  Expect = 2e-114, Method: Composition-based stats.
 Identities = 117/443 (26%), Positives = 188/443 (42%), Gaps = 71/443 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
            D  + F     +     F +  LK   L+  + +G E          V + K  D     
Sbjct  12   DERMEFSTSKEVTVHPTFESMSLKENLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQA  71

Query  269  SQHSGN------AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
               +G       + +          +AL++ P+RELA Q  + +     Y++   ++   
Sbjct  72   QSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALGDYMN---VQCHA  128

Query  323  IIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD  382
             IGG    + +  L+ G  IV GTPGR+ D++    L    ++ LVLDEAD LL++G+ +
Sbjct  129  CIGGTNVGEDIRKLDYGQHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNKGFRE  188

Query  383  FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH  442
             I  ++  +P  T      QV+V SATL  +DV  ++ K M  P  + +K ++   + + 
Sbjct  189  QIYDVYRYLPPAT------QVVVVSATLP-YDVLDMTTKFMTDPVRILVKRDELTLEGLK  241

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
               + V  +  +                                     L   Y    I 
Sbjct  242  QYFIAVEKEDWKF----------------------------------DTLCDLYDTLTIT  267

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
                 QA+IFC T+   D L     +           F+   +HGD    ER   ++ F+
Sbjct  268  -----QAVIFCNTRRKVDWLTDKMREA---------NFTVSSMHGDMPQKERDSIMQDFR  313

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            +G+ R LI TDV ARGID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V TE
Sbjct  314  QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTTE  373

Query  623  KEKVWYHVCSSRGKGCYNTRLKE  645
              ++   +     +  Y+T++ E
Sbjct  374  DVRILRDI-----ELYYSTQIDE  391


 Score = 90.6 bits (223),  Expect = 4e-18, Method: Composition-based stats.
 Identities = 26/131 (20%), Positives = 52/131 (40%), Gaps = 2/131 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F  M +   + + +    +  P+ +Q+ +I  +  G D +  A++G+GKT  FSI ++Q
Sbjct  28   TFESMSLKENLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQ  87

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA-IGSDGLCCQSREV-KEWH  120
            ++   +++ Q      T             +  Y      A IG   +    R++    H
Sbjct  88   VIDTAVRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQH  147

Query  121  GCRATKGLMKG  131
                T G +  
Sbjct  148  IVSGTPGRVAD  158


>sp|Q4P184|FAL1_USTMA ATP-dependent RNA helicase FAL1 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=FAL1 PE=3 SV=1
Length=397

 Score = 354 bits (907),  Expect = 3e-114, Method: Composition-based stats.
 Identities = 118/446 (26%), Positives = 192/446 (43%), Gaps = 71/446 (16%)

Query  208  NGKDLGLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGY  265
            N  D  LAFE   H+K    F A  LK   L+  + +  E+     +   + + +  D  
Sbjct  6    NAGDSKLAFESSEHVKVATTFDAMGLKEDLLRGIYAYNFEKPSAIQQRAILPIIRGRDVI  65

Query  266  IVKSQHSGN------AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLR  319
                  +G       + +          +AL++ P+RELA Q  + +     Y++   ++
Sbjct  66   AQAQSGTGKTATFSISMLQSIDTTLRETQALVLSPTRELAIQIQSVVLALGDYLN---VQ  122

Query  320  ELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQG  379
                IGG +  + +  L+ G  IV GTPGR+ D++    L    ++ L+LDE+D LL+ G
Sbjct  123  CHACIGGTSVGEDIRKLDYGQHIVSGTPGRVYDMIRRRHLRTKNIKMLILDESDELLNMG  182

Query  380  YSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPD  439
            + D I  ++  +P  T      QV++ SATL   DV +++ K M  P  + +K ++   +
Sbjct  183  FKDQIYDVYRYLPPST------QVVLLSATLP-QDVLEMTSKFMTDPVRILVKRDELTLE  235

Query  440  TVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVR  499
             +    V V  +  +                                     L   Y   
Sbjct  236  GIKQFFVAVEKEEWKF----------------------------------DTLCDLYDTL  261

Query  500  AIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLE  559
             I      QA+IFC T+   D L             K + F    +HG+ +  ER + + 
Sbjct  262  TIT-----QAVIFCNTRRKVDWLSAKM---------KENNFQVSSMHGEMQQKERDEVMA  307

Query  560  RFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
             F++G  R LI TDV ARGIDI  +  VIN  LP  ++NY+HRIGR GR  R G+AI+ V
Sbjct  308  EFRQGSSRVLITTDVWARGIDIANISLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFV  367

Query  620  ATEKEKVWYHVCSSRGKGCYNTRLKE  645
              +  +    +     +  Y+T++ E
Sbjct  368  TVDDVRTLRDI-----EQFYSTQIDE  388


 Score = 99.0 bits (245),  Expect = 8e-21, Method: Composition-based stats.
 Identities = 32/134 (24%), Positives = 54/134 (40%), Gaps = 2/134 (1%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F  MG+  ++ + +   ++  P+ IQ  +I  I+ G DV+  A++G+GKT  FSI ++
Sbjct  24   TTFDAMGLKEDLLRGIYAYNFEKPSAIQQRAILPIIRGRDVIAQAQSGTGKTATFSISML  83

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHG  121
            Q +  TL++ Q      T             +  Y      A    G        K  +G
Sbjct  84   QSIDTTLRETQALVLSPTRELAIQIQSVVLALGDYLNVQCHAC-IGGTSVGEDIRKLDYG  142

Query  122  CRATKGLMKGKHYY  135
                 G   G+ Y 
Sbjct  143  QHIVSG-TPGRVYD  155


>sp|A4QU31|FAL1_PYRO7 ATP-dependent RNA helicase FAL1 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=FAL1 PE=3 SV=1
Length=401

 Score = 353 bits (905),  Expect = 7e-114, Method: Composition-based stats.
 Identities = 115/440 (26%), Positives = 188/440 (43%), Gaps = 71/440 (16%)

Query  214  LAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQH  271
            + F     +     F +  LK + L+  + +G E          V + K  D        
Sbjct  15   MEFTTSKEVTVHPTFESMALKESLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSG  74

Query  272  SGN------AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
            +G       + +          +AL++ P+RELA Q  + +     Y++   ++    IG
Sbjct  75   TGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALGDYMN---VQCHACIG  131

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            G    + +  L+ G  IV GTPGR+ D++    L    ++ LVLDEAD LL+QG+ + I 
Sbjct  132  GTNVGEDIRKLDYGQHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNQGFREQIY  191

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
             ++  +P  T      QV+V SATL  +DV  ++ K M  P  + +K ++   + +    
Sbjct  192  DVYRYLPPAT------QVVVVSATLP-YDVLDMTTKFMTDPVRILVKRDELTLEGLKQYF  244

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
            + +  +  +                                     L   Y    I    
Sbjct  245  IAIEKEDWKF----------------------------------DTLCDLYDTLTIT---  267

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
              QA+IFC T+   D L     +           F+   +HGD    ER   ++ F++G+
Sbjct  268  --QAVIFCNTRRKVDWLTDKMREA---------NFTVSSMHGDMPQKERDSIMQDFRQGN  316

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
             R LI TDV ARGID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V +E  +
Sbjct  317  SRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVR  376

Query  626  VWYHVCSSRGKGCYNTRLKE  645
            +   +     +  Y+T++ E
Sbjct  377  ILRDI-----ELYYSTQIDE  391


 Score = 90.2 bits (222),  Expect = 7e-18, Method: Composition-based stats.
 Identities = 26/131 (20%), Positives = 52/131 (40%), Gaps = 2/131 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F  M +   + + +    +  P+ +Q+ +I  +  G D +  A++G+GKT  FSI ++Q
Sbjct  28   TFESMALKESLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQ  87

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA-IGSDGLCCQSREV-KEWH  120
            ++   +++ Q      T             +  Y      A IG   +    R++    H
Sbjct  88   VIDTAVRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQH  147

Query  121  GCRATKGLMKG  131
                T G +  
Sbjct  148  IVSGTPGRVAD  158


>sp|Q4WEB4|FAL1_ASPFU ATP-dependent RNA helicase fal1 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=fal1 PE=3 SV=2
Length=398

 Score = 351 bits (900),  Expect = 3e-113, Method: Composition-based stats.
 Identities = 116/451 (26%), Positives = 188/451 (42%), Gaps = 71/451 (16%)

Query  203  VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSK  260
            + ++       L F     +     F    LK + L+  + +G E          V + K
Sbjct  1    MIWANGANSDRLEFSTSKEVTVAPTFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICK  60

Query  261  APDGYIVKSQHSGNAQVTQTKFLP------NAPKALIVEPSRELAEQTLNNIKQFKKYID  314
              D        +G         L          +AL++ P+RELA Q  + I     Y++
Sbjct  61   GRDTIAQAQSGTGKTATFSIGILQVIDTVVRETQALVLSPTRELATQIQSVIMALGDYMN  120

Query  315  NPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADG  374
               ++    IGG    + +  L+ G  +V GTPGR+ D++    L    ++ LVLDEAD 
Sbjct  121  ---VQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADE  177

Query  375  LLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE  434
            LL++G+ + I  ++  +P  T      QV+V SATL  +DV  ++ K M  P  V +K +
Sbjct  178  LLNRGFREQIYDVYRYLPPAT------QVVVVSATLP-YDVLDMTTKFMTDPVRVLVKRD  230

Query  435  DSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG  494
            +   + +    + V  +  +                                     L  
Sbjct  231  ELTLEGIKQYFIAVEKEEWKF----------------------------------DTLCD  256

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
             Y    I      QA+IFC T+   D L     +           F+   +HG+    ER
Sbjct  257  LYDTLTIT-----QAVIFCNTRRKVDWLTDKMREA---------NFTVSSMHGEMPQKER  302

Query  555  KQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGL  614
               ++ F++G+ R LI TDV ARGID+  V  VIN  LP  ++NY+HRIGR GR  R G+
Sbjct  303  DSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGV  362

Query  615  AISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            AI+ V ++  ++   +        Y+T++ E
Sbjct  363  AINFVTSDDVRILRDIEL-----YYSTQIDE  388


 Score = 92.5 bits (228),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 27/131 (21%), Positives = 53/131 (40%), Gaps = 2/131 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F +M +   + + +    +  P+ +Q+ +I  I  G D +  A++G+GKT  FSI ++Q
Sbjct  25   TFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSIGILQ  84

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA-IGSDGLCCQSREV-KEWH  120
            ++   +++ Q      T             +  Y      A IG   +    R++    H
Sbjct  85   VIDTVVRETQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQH  144

Query  121  GCRATKGLMKG  131
                T G +  
Sbjct  145  VVSGTPGRVAD  155


>sp|A1C595|FAL1_ASPCL ATP-dependent RNA helicase fal1 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=fal1 PE=3 SV=1
Length=399

 Score = 349 bits (895),  Expect = 1e-112, Method: Composition-based stats.
 Identities = 116/440 (26%), Positives = 186/440 (42%), Gaps = 71/440 (16%)

Query  214  LAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQH  271
            L F     +     F    LK + L+  + +G E          V + K  D        
Sbjct  13   LEFSTSKEVTVAPTFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSG  72

Query  272  SGNAQVTQTKFLP------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
            +G         L          +AL++ P+RELA Q  + I     Y++   ++    IG
Sbjct  73   TGKTATFSISILQVIDTAVRETQALVLSPTRELATQIQSVIMALGDYMN---VQCHACIG  129

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            G    + +  L+ G  +V GTPGR+ D++    L    ++ LVLDEAD LL++G+ + I 
Sbjct  130  GTNIGEDIRKLDYGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIY  189

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
             ++  +P  T      QV+V SATL  +DV  ++ K M  P  V +K ++   + +    
Sbjct  190  DVYRYLPPAT------QVVVVSATLP-YDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYF  242

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
            + V  +  +                                     L   Y    I    
Sbjct  243  IAVEKEEWKF----------------------------------DTLCDLYDTLTIT---  265

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
              QA+IFC T+   D L     +           F+   +HG+    ER   ++ F++G+
Sbjct  266  --QAVIFCNTRRKVDWLTDKMREA---------NFTVSSMHGEMPQKERDSIMQDFRQGN  314

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
             R LI TDV ARGID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V ++  +
Sbjct  315  SRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVR  374

Query  626  VWYHVCSSRGKGCYNTRLKE  645
            +   +     +  Y+T++ E
Sbjct  375  ILRDI-----ELYYSTQIDE  389


 Score = 92.5 bits (228),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 27/131 (21%), Positives = 53/131 (40%), Gaps = 2/131 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F +M +   + + +    +  P+ +Q+ +I  I  G D +  A++G+GKT  FSI ++Q
Sbjct  26   TFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ  85

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA-IGSDGLCCQSREV-KEWH  120
            ++   +++ Q      T             +  Y      A IG   +    R++    H
Sbjct  86   VIDTAVRETQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQH  145

Query  121  GCRATKGLMKG  131
                T G +  
Sbjct  146  VVSGTPGRVAD  156


>sp|Q5AUL4|FAL1_EMENI ATP-dependent RNA helicase fal1 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=fal1 PE=3 SV=1
Length=399

 Score = 349 bits (895),  Expect = 2e-112, Method: Composition-based stats.
 Identities = 115/443 (26%), Positives = 189/443 (43%), Gaps = 71/443 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
            D  + F     +     F    LK + L+  + +G E          V + K  D     
Sbjct  10   DDKMEFNTSKEVTVAPTFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQA  69

Query  269  SQHSGN------AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
               +G       + +     +    +AL++ P+RELA Q  + I     Y++   ++   
Sbjct  70   QSGTGKTATFSISALQVIDTVVRETQALVLSPTRELATQIQSVIMALGDYMN---VQCHA  126

Query  323  IIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD  382
             IGG    + +  L+ G  +V GTPGR+ D++    L    ++ LVLDEAD LL++G+ +
Sbjct  127  CIGGTNIGEDIRKLDYGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFRE  186

Query  383  FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH  442
             I  ++  +P  T      QV+V SATL  +DV  ++ K M  P  V +K ++   + + 
Sbjct  187  QIYDVYRYLPPAT------QVVVVSATLP-YDVLDMTTKFMTDPVRVLVKRDELTLEGIK  239

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
               + V  +  +                                     L   Y    I 
Sbjct  240  QYFIAVEKEEWKF----------------------------------DTLCDLYDTLTIT  265

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
                 QA+IFC T+   D L     +           F+   +HG+    ER   ++ F+
Sbjct  266  -----QAVIFCNTRRKVDWLTDKMREA---------NFTVSSMHGEMPQKERDSIMQDFR  311

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            +G+ R LI TDV ARGID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V ++
Sbjct  312  QGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSD  371

Query  623  KEKVWYHVCSSRGKGCYNTRLKE  645
              ++   +     +  Y+T++ E
Sbjct  372  DVRILRDI-----ELYYSTQIDE  389


 Score = 91.3 bits (225),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 27/131 (21%), Positives = 52/131 (40%), Gaps = 2/131 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F +M +   + + +    +  P+ +Q+ +I  I  G D +  A++G+GKT  FSI  +Q
Sbjct  26   TFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISALQ  85

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA-IGSDGLCCQSREV-KEWH  120
            ++   +++ Q      T             +  Y      A IG   +    R++    H
Sbjct  86   VIDTVVRETQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQH  145

Query  121  GCRATKGLMKG  131
                T G +  
Sbjct  146  VVSGTPGRVAD  156


>sp|A1D071|FAL1_NEOFI ATP-dependent RNA helicase fal1 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=fal1 
PE=3 SV=1
Length=399

 Score = 349 bits (894),  Expect = 2e-112, Method: Composition-based stats.
 Identities = 116/440 (26%), Positives = 186/440 (42%), Gaps = 71/440 (16%)

Query  214  LAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQH  271
            L F     +     F    LK + L+  + +G E          V + K  D        
Sbjct  13   LEFSTSKEVTVAPTFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSG  72

Query  272  SGNAQVTQTKFLP------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
            +G         L          +AL++ P+RELA Q  + I     Y++   ++    IG
Sbjct  73   TGKTATFSISILQVIDTVVRETQALVLSPTRELATQIQSVIMALGDYMN---VQCHACIG  129

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            G    + +  L+ G  +V GTPGR+ D++    L    ++ LVLDEAD LL++G+ + I 
Sbjct  130  GTNIGEDIRKLDYGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIY  189

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
             ++  +P  T      QV+V SATL  +DV  ++ K M  P  V +K ++   + +    
Sbjct  190  DVYRYLPPAT------QVVVVSATLP-YDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYF  242

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
            + V  +  +                                     L   Y    I    
Sbjct  243  IAVEKEEWKF----------------------------------DTLCDLYDTLTIT---  265

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
              QA+IFC T+   D L     +           F+   +HG+    ER   ++ F++G+
Sbjct  266  --QAVIFCNTRRKVDWLTDKMREA---------NFTVSSMHGEMPQKERDSIMQDFRQGN  314

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
             R LI TDV ARGID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V ++  +
Sbjct  315  SRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVR  374

Query  626  VWYHVCSSRGKGCYNTRLKE  645
            +   +     +  Y+T++ E
Sbjct  375  ILRDI-----ELYYSTQIDE  389


 Score = 92.5 bits (228),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 27/131 (21%), Positives = 53/131 (40%), Gaps = 2/131 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F +M +   + + +    +  P+ +Q+ +I  I  G D +  A++G+GKT  FSI ++Q
Sbjct  26   TFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ  85

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA-IGSDGLCCQSREV-KEWH  120
            ++   +++ Q      T             +  Y      A IG   +    R++    H
Sbjct  86   VIDTVVRETQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQH  145

Query  121  GCRATKGLMKG  131
                T G +  
Sbjct  146  VVSGTPGRVAD  156


>sp|A6QSQ0|FAL1_AJECN ATP-dependent RNA helicase FAL1 OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=FAL1 PE=3 
SV=1
Length=450

 Score = 350 bits (899),  Expect = 2e-112, Method: Composition-based stats.
 Identities = 114/440 (26%), Positives = 185/440 (42%), Gaps = 71/440 (16%)

Query  214  LAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQH  271
            + F     +     F    LK   L+  + +G E          V + K  D        
Sbjct  13   MEFTTSKEVTVAPTFEDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSG  72

Query  272  SGNAQVTQTKFLP------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
            +G         L          +AL++ P+RELA Q  + +     Y++   ++    IG
Sbjct  73   TGKTATFSISILQVIDTVLRETQALVLSPTRELATQIQSVVMALGDYMN---VQCHACIG  129

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            G    + +  L++G  +V GTPGR+ D++    L    ++ LVLDEAD LL++G+ + I 
Sbjct  130  GTNVGEDIRKLDHGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIY  189

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
             ++  +P  T      QV+V SATL  +DV  ++ K M  P  + +K ++   + +    
Sbjct  190  DVYRYLPPAT------QVVVVSATLP-YDVLDMTTKFMTDPVRILVKRDELTLEGLKQYF  242

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
            + V  +  +                                     L   Y    I    
Sbjct  243  IAVEKEEWKF----------------------------------DTLCDLYDTLTIT---  265

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
              QA+IFC T+   D L     +           F+   +HG+    ER   ++ F++G+
Sbjct  266  --QAVIFCNTRRKVDWLTDKMREA---------NFTVSSMHGEMPQKERDSIMQDFRQGN  314

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
             R LI TDV ARGID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V +E  +
Sbjct  315  SRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVR  374

Query  626  VWYHVCSSRGKGCYNTRLKE  645
            +   +        Y+T++ E
Sbjct  375  ILRDIEL-----YYSTQIDE  389


 Score = 93.7 bits (231),  Expect = 7e-19, Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 2/131 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F +M +   + + +    +  P+ +Q+ +I  I  G D +  A++G+GKT  FSI ++Q
Sbjct  26   TFEDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ  85

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA-IGSDGLCCQSREV-KEWH  120
            ++   L++ Q      T             +  Y      A IG   +    R++    H
Sbjct  86   VIDTVLRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDHGQH  145

Query  121  GCRATKGLMKG  131
                T G +  
Sbjct  146  VVSGTPGRVAD  156


>sp|Q2UAK1|FAL1_ASPOR ATP-dependent RNA helicase fal1 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=fal1 
PE=3 SV=1
Length=398

 Score = 348 bits (893),  Expect = 3e-112, Method: Composition-based stats.
 Identities = 116/451 (26%), Positives = 188/451 (42%), Gaps = 71/451 (16%)

Query  203  VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSK  260
            +   K      + F     +     F    LK + L+  + +G E          V + K
Sbjct  1    MYTDKGANSDRMEFNTSKEVTVAPTFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICK  60

Query  261  APDGYIVKSQHSGNAQVTQTKFLP------NAPKALIVEPSRELAEQTLNNIKQFKKYID  314
              D        +G         L          +AL++ P+RELA Q  + I     Y++
Sbjct  61   GRDTIAQAQSGTGKTATFSISILQVIDTVVRESQALVLSPTRELATQIQSVIMALGDYMN  120

Query  315  NPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADG  374
               ++    IGG    + +  L+ G  +V GTPGR+ D++    L    ++ LVLDEAD 
Sbjct  121  ---VQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADE  177

Query  375  LLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE  434
            LL++G+ + I  ++  +P  T      QV+V SATL  +DV  ++ K M  P  V +K +
Sbjct  178  LLNRGFREQIYDVYRYLPPAT------QVVVVSATLP-YDVLDMTTKFMTDPVRVLVKRD  230

Query  435  DSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG  494
            +   + +    + V  +  +                                     L  
Sbjct  231  ELTLEGIKQYFIAVEKEEWKF----------------------------------DTLCD  256

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
             Y    I      QA+IFC T+   D L     +           F+   +HG+    ER
Sbjct  257  LYDTLTIT-----QAVIFCNTRRKVDWLTDKMREA---------NFTVSSMHGEMPQKER  302

Query  555  KQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGL  614
               ++ F++G+ R LI TDV ARGID+  V  VIN  LP  ++NY+HRIGR GR  R G+
Sbjct  303  DSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGV  362

Query  615  AISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            AI+ V ++  ++   +     +  Y+T++ E
Sbjct  363  AINFVTSDDVRILRDI-----ELYYSTQIDE  388


 Score = 92.9 bits (229),  Expect = 8e-19, Method: Composition-based stats.
 Identities = 27/131 (21%), Positives = 53/131 (40%), Gaps = 2/131 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F +M +   + + +    +  P+ +Q+ +I  I  G D +  A++G+GKT  FSI ++Q
Sbjct  25   TFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ  84

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA-IGSDGLCCQSREV-KEWH  120
            ++   +++ Q      T             +  Y      A IG   +    R++    H
Sbjct  85   VIDTVVRESQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQH  144

Query  121  GCRATKGLMKG  131
                T G +  
Sbjct  145  VVSGTPGRVAD  155


>sp|Q0CAS8|FAL1_ASPTN ATP-dependent RNA helicase fal1 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=fal1 
PE=3 SV=1
Length=399

 Score = 347 bits (891),  Expect = 7e-112, Method: Composition-based stats.
 Identities = 115/440 (26%), Positives = 186/440 (42%), Gaps = 71/440 (16%)

Query  214  LAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQH  271
            + F     +     F    LK + L+  + +G E          V + K  D        
Sbjct  13   MEFNTSKEVTVAPTFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSG  72

Query  272  SGNAQVTQTKFLP------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
            +G         L          +AL++ P+RELA Q  + I     Y++   ++    IG
Sbjct  73   TGKTATFAISILQVIDTVVRESQALVLSPTRELATQIQSVIMALGDYMN---VQCHACIG  129

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            G    + +  L+ G  +V GTPGR+ D++    L    ++ LVLDEAD LL++G+ + I 
Sbjct  130  GTNIGEDIRKLDYGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIY  189

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
             ++  +P  T      QV+V SATL  +DV  ++ K M  P  V +K ++   + +    
Sbjct  190  DVYRYLPPAT------QVVVVSATLP-YDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYF  242

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
            + V  +  +                                     L   Y    I    
Sbjct  243  IAVEKEEWKF----------------------------------DTLCDLYDTLTIT---  265

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
              QA+IFC T+   D L     +           F+   +HG+    ER   ++ F++G+
Sbjct  266  --QAVIFCNTRRKVDWLTDKMREA---------NFTVSSMHGEMPQKERDSIMQDFRQGN  314

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
             R LI TDV ARGID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V ++  +
Sbjct  315  SRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVR  374

Query  626  VWYHVCSSRGKGCYNTRLKE  645
            +   +     +  Y+T++ E
Sbjct  375  ILRDI-----ELYYSTQIDE  389


 Score = 92.5 bits (228),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 26/131 (20%), Positives = 53/131 (40%), Gaps = 2/131 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F +M +   + + +    +  P+ +Q+ +I  I  G D +  A++G+GKT  F+I ++Q
Sbjct  26   TFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFAISILQ  85

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA-IGSDGLCCQSREV-KEWH  120
            ++   +++ Q      T             +  Y      A IG   +    R++    H
Sbjct  86   VIDTVVRESQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQH  145

Query  121  GCRATKGLMKG  131
                T G +  
Sbjct  146  VVSGTPGRVAD  156


>sp|Q1DTB3|FAL1_COCIM ATP-dependent RNA helicase FAL1 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=FAL1 PE=3 SV=2
Length=399

 Score = 347 bits (891),  Expect = 8e-112, Method: Composition-based stats.
 Identities = 118/443 (27%), Positives = 187/443 (42%), Gaps = 71/443 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
            D  + F     +     F    LK   L+  + +G E          V + K  D     
Sbjct  10   DERIEFTTSKEVTVAPTFDDMHLKENLLRGIYAYGFESPSAIQSRAIVQICKGRDTIAQA  69

Query  269  SQHSGNAQVTQTKFLP------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
               +G         L          +AL++ P+RELA Q  N I     Y++   ++   
Sbjct  70   QSGTGKTATFAISILQVIDTALRETQALVLSPTRELATQIQNVIMAVGDYMN---VQCHA  126

Query  323  IIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD  382
             IGG    D +  L++G  +V GTPGR+ D++    L    ++ LVLDEAD LL++G+ +
Sbjct  127  CIGGTNVGDDIRKLDHGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADDLLARGFRE  186

Query  383  FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH  442
             I  ++  +P  T      QV+V SATL  +DV  ++ K M  P  + +K ++   + + 
Sbjct  187  QIYDVYRYLPPAT------QVVVLSATLP-YDVLSMTTKFMTDPVRILVKRDELTLEGLK  239

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
               + V  +  +                                     L   Y    I 
Sbjct  240  QYFIAVEKEEWKF----------------------------------DTLCDLYDTLTIT  265

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
                 QA+IFC T+   D L     +           F+   +HG+    ER   ++ F+
Sbjct  266  -----QAVIFCNTRRKVDWLTDKMREA---------NFTVSSMHGEMPQKERDSIMQDFR  311

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            +G+ R LI TDV ARGID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V +E
Sbjct  312  QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSE  371

Query  623  KEKVWYHVCSSRGKGCYNTRLKE  645
              ++   +     +  Y+T++ E
Sbjct  372  DVRILRDI-----ELYYSTQIDE  389


 Score = 93.7 bits (231),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 50/132 (38%), Gaps = 4/132 (3%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F +M +   + + +    +  P+ IQ+ +I  I  G D +  A++G+GKT  F+I ++Q
Sbjct  26   TFDDMHLKENLLRGIYAYGFESPSAIQSRAIVQICKGRDTIAQAQSGTGKTATFAISILQ  85

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHG-  121
            ++   L++ Q      T             +  Y      A    G        K  HG 
Sbjct  86   VIDTALRETQALVLSPTRELATQIQNVIMAVGDYMNVQCHAC-IGGTNVGDDIRKLDHGQ  144

Query  122  --CRATKGLMKG  131
                 T G +  
Sbjct  145  HVVSGTPGRVAD  156


>sp|A5AAE5|FAL1_ASPNC ATP-dependent RNA helicase fal1 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=fal1 PE=3 SV=2
Length=399

 Score = 347 bits (890),  Expect = 9e-112, Method: Composition-based stats.
 Identities = 115/440 (26%), Positives = 186/440 (42%), Gaps = 71/440 (16%)

Query  214  LAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQH  271
            + F     +     F    LK + L+  + +G E          V + K  D        
Sbjct  13   MEFNTSKEVTVAPTFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSG  72

Query  272  SGNAQVTQTKFLP------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
            +G         L          +AL++ P+RELA Q  + I     Y++   ++    IG
Sbjct  73   TGKTATFSISILQVIDTVVRESQALVLSPTRELATQIQSVIMALGDYMN---VQCHACIG  129

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            G    + +  L+ G  +V GTPGR+ D++    L    ++ LVLDEAD LL++G+ + I 
Sbjct  130  GTNIGEDIRKLDYGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIY  189

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
             ++  +P  T      QV+V SATL  +DV  ++ K M  P  V +K ++   + +    
Sbjct  190  DVYRYLPPAT------QVVVVSATLP-YDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYF  242

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
            + V  +  +                                     L   Y    I    
Sbjct  243  IAVEKEEWKF----------------------------------DTLCDLYDTLTIT---  265

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
              QA+IFC T+   D L     +           F+   +HG+    ER   ++ F++G+
Sbjct  266  --QAVIFCNTRRKVDWLTDKMREA---------NFTVSSMHGEMPQKERDSIMQDFRQGN  314

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
             R LI TDV ARGID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V ++  +
Sbjct  315  SRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVR  374

Query  626  VWYHVCSSRGKGCYNTRLKE  645
            +   +     +  Y+T++ E
Sbjct  375  ILRDI-----ELYYSTQIDE  389


 Score = 92.9 bits (229),  Expect = 9e-19, Method: Composition-based stats.
 Identities = 27/131 (21%), Positives = 53/131 (40%), Gaps = 2/131 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F +M +   + + +    +  P+ +Q+ +I  I  G D +  A++G+GKT  FSI ++Q
Sbjct  26   TFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ  85

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA-IGSDGLCCQSREV-KEWH  120
            ++   +++ Q      T             +  Y      A IG   +    R++    H
Sbjct  86   VIDTVVRESQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQH  145

Query  121  GCRATKGLMKG  131
                T G +  
Sbjct  146  VVSGTPGRVAD  156


>sp|P41382|IF410_TOBAC Eukaryotic initiation factor 4A-10 OS=Nicotiana 
tabacum OX=4097 PE=2 SV=1
Length=413

 Score = 347 bits (890),  Expect = 1e-111, Method: Composition-based stats.
 Identities = 116/493 (24%), Positives = 201/493 (41%), Gaps = 104/493 (21%)

Query  166  GFGGTGKKSHNKQFDNYGEEFT---MHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHM  222
            G    G +   +Q+D    E       +    Y ++                        
Sbjct  3    GLAPEGSQFDARQYDAKMTELLGTEQEEFFTSYDEVYDS---------------------  41

Query  223  KNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQ----  276
                 F A  L+   L+  + +G E+     + G V   K  D  +++   SG  +    
Sbjct  42   -----FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLD--VIQQAQSGTGKTATF  94

Query  277  ----VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQ  332
                + Q  +     +AL++ P+RELA+Q    ++    Y+    ++    +GG + R+ 
Sbjct  95   CSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLG---VKVHACVGGTSVRED  151

Query  333  LSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP  392
              +L++GV +VVGTPGR+ D++    L    ++  VLDEAD +LS+G+ D I  +   +P
Sbjct  152  QRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLP  211

Query  393  QVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKT  452
                   ++QV V SAT+   +  +++ K M+ P  + +K +D   + +    V V+ + 
Sbjct  212  ------PKIQVGVFSATMPP-EALEITRKFMNKPVRILVKRDDVTLEGIKQFYVNVDKEE  264

Query  453  DRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF  512
             +L                                       E      +   + Q++IF
Sbjct  265  WKL---------------------------------------ETLCDLYETLAITQSVIF  285

Query  513  CRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICT  572
              T+   D L             +    +    HGD   + R   +  F+ G  R LI T
Sbjct  286  VNTRRKVDWLTDKM---------RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITT  336

Query  573  DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
            D+ ARGID+  V  VIN  LP + +NY+HRIGR GR  R G+AI+ V  + E++   +  
Sbjct  337  DLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDI--  394

Query  633  SRGKGCYNTRLKE  645
               +  YN  ++E
Sbjct  395  ---QKFYNVVIEE  404


 Score = 81.7 bits (200),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 20/70 (29%), Positives = 35/70 (50%), Gaps = 0/70 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F  MG+   + + +    +  P+ IQ   I     G DV+  A++G+GKT  F   V+Q
Sbjct  41   SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQ  100

Query  63   IVYETLKDQQ  72
             +  +L + Q
Sbjct  101  QLDYSLVECQ  110


>sp|Q40467|IF414_TOBAC Eukaryotic initiation factor 4A-14 OS=Nicotiana 
tabacum OX=4097 PE=2 SV=1
Length=413

 Score = 347 bits (890),  Expect = 2e-111, Method: Composition-based stats.
 Identities = 116/493 (24%), Positives = 201/493 (41%), Gaps = 104/493 (21%)

Query  166  GFGGTGKKSHNKQFDNYGEEFT---MHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHM  222
            G    G +   +Q+D    E       +    Y ++                        
Sbjct  3    GLAPEGSQFDARQYDAKMTELLGTEQEEFFTSYDEVYDS---------------------  41

Query  223  KNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQ----  276
                 F A  L+   L+  + +G E+     + G V   K  D  +++   SG  +    
Sbjct  42   -----FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLD--VIQQAQSGTGKTATF  94

Query  277  ----VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQ  332
                + Q  +     +AL++ P+RELA+Q    ++    Y+    ++    +GG + R+ 
Sbjct  95   CSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLG---VKVHACVGGTSVRED  151

Query  333  LSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP  392
              +L++GV +VVGTPGR+ D++    L    ++  VLDEAD +LS+G+ D I  +   +P
Sbjct  152  QRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLP  211

Query  393  QVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKT  452
                   ++QV V SAT+   +  +++ K M  P  + +K +D   + +    V V+ + 
Sbjct  212  ------PKIQVGVFSATMPP-EALEITRKFMSKPVRILVKRDDVTLEGIKQFYVNVDKEE  264

Query  453  DRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF  512
             +L                                       E      +   + Q++IF
Sbjct  265  WKL---------------------------------------ETLCDLYETLAITQSVIF  285

Query  513  CRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICT  572
              T+   D L             +    +    HGD   + R   +  F+ G  R LI T
Sbjct  286  VNTRRKVDWLTDKM---------RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITT  336

Query  573  DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
            D+ ARGID+  V  VIN  LP + +NY+HRIGR GR  R G+AI+ V  + E++ + +  
Sbjct  337  DLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDI--  394

Query  633  SRGKGCYNTRLKE  645
               +  YN  ++E
Sbjct  395  ---QKFYNVVIEE  404


 Score = 81.7 bits (200),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 20/70 (29%), Positives = 35/70 (50%), Gaps = 0/70 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F  MG+   + + +    +  P+ IQ   I     G DV+  A++G+GKT  F   V+Q
Sbjct  41   SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQ  100

Query  63   IVYETLKDQQ  72
             +  +L + Q
Sbjct  101  QLDYSLVECQ  110


>sp|Q40468|IF415_TOBAC Eukaryotic initiation factor 4A-15 OS=Nicotiana 
tabacum OX=4097 PE=2 SV=1
Length=413

 Score = 347 bits (889),  Expect = 2e-111, Method: Composition-based stats.
 Identities = 117/487 (24%), Positives = 199/487 (41%), Gaps = 92/487 (19%)

Query  166  GFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGL-------AFEI  218
            G    G +   +QFD    E    D    +   D+ +  F   G    L        FE 
Sbjct  3    GAAPEGSQFDARQFDTKMNELLSADGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEK  62

Query  219  PPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVT  278
            P  ++ + + P C                      G   + +A  G   K+    +  + 
Sbjct  63   PSAIQQRGIVPFC---------------------KGLDVIQQAQSG-TGKTATFCSGILQ  100

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            Q  +     +AL++ P+RELA+Q    ++    Y+    ++    +GG + R+   +L +
Sbjct  101  QLAYELLECQALVLAPTRELAQQIEKVMRALGDYLG---VKVTACVGGTSVREDQRILSS  157

Query  339  GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
            GV +VVGTPGR+ D++    L    ++  VLDEAD +LS+G+ D I  +   +P      
Sbjct  158  GVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLP------  211

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER  458
             ++QV V SAT+   +  +++ K M+ P  + +K ++   + +    V V+ +  +L   
Sbjct  212  PKIQVGVFSATMPP-EALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKL---  267

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
                                                E      +   + Q++IF  T+  
Sbjct  268  ------------------------------------ETLCDLYETLAITQSVIFVNTRRK  291

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
             D L             +    +    HGD   + R   +  F+ G  R LI TD+ ARG
Sbjct  292  VDWLTDKM---------RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG  342

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGC  638
            ID+  V  VIN  LP + +NY+HRIGR GR  R G+AI+ V  + E++   +     +  
Sbjct  343  IDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDI-----QRF  397

Query  639  YNTRLKE  645
            YN  ++E
Sbjct  398  YNVVIEE  404


 Score = 81.7 bits (200),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 34/70 (49%), Gaps = 0/70 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F  MG+   + + +    +  P+ IQ   I     G DV+  A++G+GKT  F   ++Q
Sbjct  41   SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ  100

Query  63   IVYETLKDQQ  72
             +   L + Q
Sbjct  101  QLAYELLECQ  110


>sp|A7EM88|FAL1_SCLS1 ATP-dependent RNA helicase fal1 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=fal1 PE=3 SV=1
Length=399

 Score = 345 bits (885),  Expect = 5e-111, Method: Composition-based stats.
 Identities = 114/440 (26%), Positives = 186/440 (42%), Gaps = 71/440 (16%)

Query  214  LAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQH  271
            + F     +     F    LK   L+  + +G E          V + K  D        
Sbjct  13   MEFTTSADVTVAPTFQDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSG  72

Query  272  SGN------AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
            +G       + +          +AL++ P+RELA Q  + +     Y++   ++    IG
Sbjct  73   TGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALGDYMN---VQCHACIG  129

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            G    + +  L+ G  IV GTPGR+ D++    L    ++ LVLDEAD LL++G+ + I 
Sbjct  130  GTNVGEDIRKLDYGQHIVSGTPGRVADMIRRRNLRTRHIKMLVLDEADELLNRGFREQIY  189

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
             ++  +P  T      QV+V SATL  +DV  ++ K M  P  + +K ++   + +    
Sbjct  190  DVYRYLPPAT------QVVVVSATLP-YDVLDMTTKFMTDPVRILVKRDELTLEGLKQYF  242

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
            + V  +  +                                     L   Y    I    
Sbjct  243  IAVEKEEWKF----------------------------------DTLCDLYDTLTIT---  265

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
              QA+IFC T+   D L     +           F+   +HG+    ER   ++ F++G+
Sbjct  266  --QAVIFCNTRRKVDWLTDKMREA---------NFTVSSMHGEMPQKERDSIMQDFRQGN  314

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
             R LI TDV ARGID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V +E  +
Sbjct  315  SRVLISTDVWARGIDVQQVSLVINYDLPVNRENYIHRIGRSGRFGRKGVAINFVTSEDVR  374

Query  626  VWYHVCSSRGKGCYNTRLKE  645
            +   +     +  Y+T++ E
Sbjct  375  ILRDI-----ELYYSTQIDE  389


 Score = 91.3 bits (225),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 27/131 (21%), Positives = 53/131 (40%), Gaps = 2/131 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F +M +   + + +    +  P+ +Q+ +I  I  G D +  A++G+GKT  FSI ++Q
Sbjct  26   TFQDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQ  85

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA-IGSDGLCCQSREV-KEWH  120
            ++   +++ Q      T             +  Y      A IG   +    R++    H
Sbjct  86   VIDTAVRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQH  145

Query  121  GCRATKGLMKG  131
                T G +  
Sbjct  146  IVSGTPGRVAD  156


>sp|A6S4N4|FAL1_BOTFB ATP-dependent RNA helicase fal1 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=fal1 PE=3 SV=1
Length=399

 Score = 345 bits (884),  Expect = 6e-111, Method: Composition-based stats.
 Identities = 114/440 (26%), Positives = 186/440 (42%), Gaps = 71/440 (16%)

Query  214  LAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQH  271
            + F     +     F    LK   L+  + +G E          V + K  D        
Sbjct  13   MEFTTSADVTVAPTFQDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSG  72

Query  272  SGN------AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
            +G       + +          +AL++ P+RELA Q  + +     Y++   ++    IG
Sbjct  73   TGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALGDYMN---VQCHACIG  129

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            G    + +  L+ G  IV GTPGR+ D++    L    ++ LVLDEAD LL++G+ + I 
Sbjct  130  GTNVGEDIRKLDYGQHIVSGTPGRVADMIRRRNLRTRHIKMLVLDEADELLNRGFREQIY  189

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
             ++  +P  T      QV+V SATL  +DV  ++ K M  P  + +K ++   + +    
Sbjct  190  DVYRYLPPAT------QVVVVSATLP-YDVLDMTTKFMTDPVRILVKRDELTLEGLKQYF  242

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
            + V  +  +                                     L   Y    I    
Sbjct  243  IAVEKEDWKF----------------------------------DTLCDLYDTLTIT---  265

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
              QA+IFC T+   D L     +           F+   +HG+    ER   ++ F++G+
Sbjct  266  --QAVIFCNTRRKVDWLTDKMREA---------NFTVSSMHGEMPQKERDSIMQDFRQGN  314

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
             R LI TDV ARGID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V +E  +
Sbjct  315  SRVLISTDVWARGIDVQQVSLVINYDLPVNRENYIHRIGRSGRFGRKGVAINFVTSEDVR  374

Query  626  VWYHVCSSRGKGCYNTRLKE  645
            +   +     +  Y+T++ E
Sbjct  375  ILRDI-----ELYYSTQIDE  389


 Score = 91.3 bits (225),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 27/131 (21%), Positives = 53/131 (40%), Gaps = 2/131 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F +M +   + + +    +  P+ +Q+ +I  I  G D +  A++G+GKT  FSI ++Q
Sbjct  26   TFQDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQ  85

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA-IGSDGLCCQSREV-KEWH  120
            ++   +++ Q      T             +  Y      A IG   +    R++    H
Sbjct  86   VIDTAVRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQH  145

Query  121  GCRATKGLMKG  131
                T G +  
Sbjct  146  IVSGTPGRVAD  156


>sp|P41381|IF4A8_TOBAC Eukaryotic initiation factor 4A-8 OS=Nicotiana 
tabacum OX=4097 PE=2 SV=1
Length=413

 Score = 345 bits (885),  Expect = 7e-111, Method: Composition-based stats.
 Identities = 115/486 (24%), Positives = 199/486 (41%), Gaps = 92/486 (19%)

Query  167  FGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGL-------AFEIP  219
                G +   +Q+D+   +    D    +   D+ +  F   G    L        FE P
Sbjct  4    LAPDGAQFDARQYDSKMNDLLAADGKDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKP  63

Query  220  PHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQ  279
              ++ + + P C                      G   + +A  G   K+    +  + Q
Sbjct  64   SAIQQRGIVPFC---------------------KGLDVIQQAQSG-TGKTATFCSGILQQ  101

Query  280  TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
              +     +AL++ P+RELA+Q    ++    Y+    ++    +GG + R+   +L  G
Sbjct  102  LDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLG---VKVHACVGGTSVREDQRILAAG  158

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
            V ++VGTPGR+ D++    L    +R  VLDEAD +LS+G+ D I  +   +P       
Sbjct  159  VHVIVGTPGRVFDMLRRQSLRPDYLRMFVLDEADEMLSRGFKDQIYDIFQMLPT------  212

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
            ++QV V SAT+   +   ++ K M+ P  + +K ++   + +    V V+ +  +L    
Sbjct  213  KVQVGVFSATMPP-EALDITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKL----  267

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
                                               E      +   + Q++IF  T+   
Sbjct  268  -----------------------------------ETLCDLYETLAITQSVIFVNTRRKV  292

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            D L             +    +    HGD   + R   +  F+ G  R LI TD+ ARGI
Sbjct  293  DWLTDKM---------RTRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI  343

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCY  639
            D+  V  VIN  LP + +NY+HRIGR GR  R G+AI+ V T+ E++ + +     +  Y
Sbjct  344  DVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLFDI-----QKFY  398

Query  640  NTRLKE  645
            N  ++E
Sbjct  399  NVIIEE  404


 Score = 80.6 bits (197),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 0/70 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F  MG+   + + +    +  P+ IQ   I     G DV+  A++G+GKT  F   ++Q
Sbjct  41   SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ  100

Query  63   IVYETLKDQQ  72
             +   L   Q
Sbjct  101  QLDYGLVQCQ  110


>sp|P35683|IF4A1_ORYSJ Eukaryotic initiation factor 4A-1 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os06g0701100 PE=2 SV=2
Length=414

 Score = 345 bits (884),  Expect = 1e-110, Method: Composition-based stats.
 Identities = 121/488 (25%), Positives = 203/488 (42%), Gaps = 93/488 (19%)

Query  166  GFGGTGKKSHNKQFDNYGEEFT-MHDTIGCYLDIDKGHVKFSKNGKDLGL-------AFE  217
            G    G +   K +D+  +E     +T   +   D+ H  F   G    L        FE
Sbjct  3    GMAPEGSQFDAKHYDSKMQELLNQGETEEFFTSYDEVHESFDDMGLQENLLRGIYAYGFE  62

Query  218  IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQV  277
             P  ++ + + P C                      G   + +A  G   K+    +  +
Sbjct  63   KPSAIQQRGIVPFC---------------------KGLDVIQQAQSG-TGKTATFCSGIL  100

Query  278  TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE  337
             Q  +     +AL++ P+RELA+Q    ++    Y+    ++    +GG + R+   +L 
Sbjct  101  QQLDYAVVECQALVLAPTRELAQQIEKVMRALGDYLG---VKVHACVGGTSVREDQRILA  157

Query  338  NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD  397
            +GV +VVGTPGR+ D++    L    ++  VLDEAD +LS+G+ D I  +   +P     
Sbjct  158  SGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP-----  212

Query  398  GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWE  457
              ++QV V SAT+   +  +++ K M+ P  + +K ++   + +    V V  +  +L  
Sbjct  213  -SKIQVGVFSATMPP-EALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKL--  268

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
                                              L   Y   AI      Q++IF  T+ 
Sbjct  269  --------------------------------DTLCDLYETLAIT-----QSVIFVNTRR  291

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
              D L             +G   +    HGD   + R   +  F+ G  R LI TD+ AR
Sbjct  292  KVDWLTDKM---------RGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLAR  342

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
            GID+  V  VIN  LP + +NY+HRIGR GR  R G+AI+ V  + E++ + +     + 
Sbjct  343  GIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI-----QR  397

Query  638  CYNTRLKE  645
             YN  ++E
Sbjct  398  FYNVVIEE  405


 Score = 82.1 bits (201),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 18/70 (26%), Positives = 35/70 (50%), Gaps = 0/70 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F +MG+   + + +    +  P+ IQ   I     G DV+  A++G+GKT  F   ++Q
Sbjct  42   SFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ  101

Query  63   IVYETLKDQQ  72
             +   + + Q
Sbjct  102  QLDYAVVECQ  111


>sp|P41376|IF4A1_ARATH Eukaryotic initiation factor 4A-1 OS=Arabidopsis 
thaliana OX=3702 GN=EIF4A1 PE=1 SV=1
Length=412

 Score = 344 bits (883),  Expect = 1e-110, Method: Composition-based stats.
 Identities = 118/492 (24%), Positives = 200/492 (41%), Gaps = 103/492 (21%)

Query  166  GFGGTGKKSHNKQFDNYGEEFTMH--DTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMK  223
            G    G +   +QFD    E      +    Y D+ +                       
Sbjct  3    GSAPEGTQFDARQFDQKLNEVLEGQDEFFTSYDDVHES----------------------  40

Query  224  NQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQ-----  276
                F A  L+   L+  + +G E+     + G V   K  D  +++   SG  +     
Sbjct  41   ----FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLD--VIQQAQSGTGKTATFC  94

Query  277  ---VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQL  333
               + Q  F     +AL++ P+RELA+Q    ++    Y+    ++    +GG + R+  
Sbjct  95   SGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLG---VKVHACVGGTSVREDQ  151

Query  334  SVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ  393
             +L+ GV +VVGTPGR+ D++    L    ++  VLDEAD +LS+G+ D I  +   +P 
Sbjct  152  RILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLP-  210

Query  394  VTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTD  453
                  ++QV V SAT+   +  +++ K M  P  + +K ++   + +    V V  +  
Sbjct  211  -----PKIQVGVFSATMPP-EALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEW  264

Query  454  RLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFC  513
            +L                                       E      +   + Q++IF 
Sbjct  265  KL---------------------------------------ETLCDLYETLAITQSVIFV  285

Query  514  RTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTD  573
             T+   D L             +    +    HGD   + R   +  F+ G  R LI TD
Sbjct  286  NTRRKVDWLTDKM---------RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD  336

Query  574  VAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
            + ARGID+  V  VIN  LP + +NY+HRIGR GR  R G+AI+ V  + E++ + +   
Sbjct  337  LLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI---  393

Query  634  RGKGCYNTRLKE  645
              +  YN  ++E
Sbjct  394  --QKFYNVVVEE  403


 Score = 79.4 bits (194),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 20/70 (29%), Positives = 34/70 (49%), Gaps = 0/70 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F  MG+   + + +    +  P+ IQ   I     G DV+  A++G+GKT  F   V+Q
Sbjct  40   SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQ  99

Query  63   IVYETLKDQQ  72
             +  +L   Q
Sbjct  100  QLDFSLIQCQ  109


>sp|Q24731|DDX1_DROVI ATP-dependent RNA helicase Ddx1 (Fragment) 
OS=Drosophila virilis OX=7244 GN=Ddx1 PE=3 SV=1
Length=400

 Score = 344 bits (882),  Expect = 1e-110, Method: Composition-based stats.
 Identities = 223/378 (59%), Positives = 274/378 (72%), Gaps = 37/378 (10%)

Query  370  DEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWV  429
            DEAD LL QGY+D I R+H QIP++TSDG RLQ+IVCSATLH+F+VKK++E++MHFPTW 
Sbjct  2    DEADRLLKQGYTDLIERLHKQIPKITSDGCRLQMIVCSATLHAFEVKKMAERLMHFPTWG  61

Query  430  DLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAI  489
            DLKGED+VP+TVHHVV  V+P TD  W++L +  I TD VH  DN  P   SPE +S+A+
Sbjct  62   DLKGEDAVPETVHHVVCMVDPHTDSSWQQLRQP-IHTDGVHDHDNVHPTNQSPETFSQAV  120

Query  490  KILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDR  549
            K+LKGEY +RAI +HKMD+AIIFCRTK DCDNLEQ+  Q+G      G +FSCVCLHGDR
Sbjct  121  KLLKGEYCIRAIDQHKMDRAIIFCRTKQDCDNLEQHLSQRG------GQRFSCVCLHGDR  174

Query  550  KPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY------------------VINVT  591
            KP ERKQNLE FK+ +V+FLICTDVAARG+DI G+P+                  VIN+T
Sbjct  175  KPQERKQNLEMFKRQEVKFLICTDVAARGLDITGLPFSKDLKYLSENTLNFPNLAVINIT  234

Query  592  LPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH--VCSSRGKGCYNTRLKEDGGC  649
            LPD+K NYVHRIGRVGR E MGLAISLV+T  EKVWYH   C +RG+           G 
Sbjct  235  LPDDKSNYVHRIGRVGRPESMGLAISLVSTVPEKVWYHGEWCKTRGR----------SGS  284

Query  650  TIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILA  709
             IWYNE  LL+E+E+HLN TI QV   + VPV++FDGKV YGQK    G  Y+ HV+ L 
Sbjct  285  CIWYNEPNLLAEVEDHLNITIQQVVKSLDVPVNDFDGKVVYGQKNLNMGTGYEDHVEQLG  344

Query  710  PTVQELAALEKEAQTSFL  727
            PTV++   LE ++Q+ FL
Sbjct  345  PTVRKQTDLELQSQSLFL  362


>sp|Q40470|IF4A7_TOBAC Eukaryotic initiation factor 4A-7 OS=Nicotiana 
tabacum OX=4097 PE=2 SV=1
Length=413

 Score = 344 bits (883),  Expect = 1e-110, Method: Composition-based stats.
 Identities = 116/493 (24%), Positives = 201/493 (41%), Gaps = 104/493 (21%)

Query  166  GFGGTGKKSHNKQFDNYGEEFT---MHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHM  222
            G    G +   +Q+D    E       +    Y ++                        
Sbjct  3    GLAPEGSQFDARQYDAKMTELLGTEQEEFFTSYDEVYDS---------------------  41

Query  223  KNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQ----  276
                 F A  L+   L+  + +G E+     + G V   K  D  +++   SG  +    
Sbjct  42   -----FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLD--VIQQAQSGTGKTATF  94

Query  277  ----VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQ  332
                + Q  +     +AL++ P+RELA+Q    ++    Y+    ++    +GG + R+ 
Sbjct  95   CSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLG---VKVHACVGGTSVRED  151

Query  333  LSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP  392
              +L++GV +VVGTPGR+ D++    L    ++  VLDEAD +LS+G+ D I  +   +P
Sbjct  152  QRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLP  211

Query  393  QVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKT  452
                   ++QV V SAT+   +  +++ K M+ P  + +K +D   + +    V V+ + 
Sbjct  212  ------PKIQVGVFSATMPP-EALEITRKFMNKPVRILVKRDDVTLEGIKQFYVNVDKEE  264

Query  453  DRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF  512
             +L                                       E      +   + Q++IF
Sbjct  265  WKL---------------------------------------ETLCDLYETLAITQSVIF  285

Query  513  CRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICT  572
              T+   D L             +    +    HGD   + R   +  F+ G  R LI T
Sbjct  286  VNTRRKVDWLTDKM---------RTRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITT  336

Query  573  DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
            D+ ARGID+  V  VIN  LP + +NY+HRIGR GR  R G+AI+ V  + E++   +  
Sbjct  337  DLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVIKDDERMLSDI--  394

Query  633  SRGKGCYNTRLKE  645
               +  YN  ++E
Sbjct  395  ---QRFYNVVIEE  404


 Score = 81.7 bits (200),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 20/70 (29%), Positives = 35/70 (50%), Gaps = 0/70 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F  MG+   + + +    +  P+ IQ   I     G DV+  A++G+GKT  F   V+Q
Sbjct  41   SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQ  100

Query  63   IVYETLKDQQ  72
             +  +L + Q
Sbjct  101  QLDYSLVECQ  110


>sp|Q40471|IF4A9_TOBAC Eukaryotic initiation factor 4A-9 OS=Nicotiana 
tabacum OX=4097 PE=2 SV=1
Length=413

 Score = 344 bits (882),  Expect = 2e-110, Method: Composition-based stats.
 Identities = 116/493 (24%), Positives = 202/493 (41%), Gaps = 104/493 (21%)

Query  166  GFGGTGKKSHNKQFDNYGEEFTMH---DTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHM  222
            G    G +   +Q+D+   E       D    Y ++                        
Sbjct  3    GAAPEGSQFDARQYDSKMTELLNAEGQDFFTSYDEVYHS---------------------  41

Query  223  KNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQ----  276
                 F A  LK   L+  + +G E+     + G V   K  D  +++   SG  +    
Sbjct  42   -----FDAMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLD--VIQQAQSGTGKTATF  94

Query  277  ----VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQ  332
                + Q  +     +AL++ P+RELA+Q    ++    Y+    ++    +GG + R+ 
Sbjct  95   CSGILQQLDYELLDCQALVLAPTRELAQQIEKVMRALGDYLG---VKVHACVGGTSVRED  151

Query  333  LSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP  392
              +L +GV +VVGTPGR+ D++    L    ++  VLDEAD +LS+G+ D I  +   +P
Sbjct  152  QRILSSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLP  211

Query  393  QVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKT  452
                   ++QV V SAT+   +  +++ K M+ P  + +K ++   + +    V V+ + 
Sbjct  212  ------PKIQVGVFSATMPP-EALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEE  264

Query  453  DRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF  512
             +L                                       E      +   + Q++IF
Sbjct  265  WKL---------------------------------------ETLCDLYETLAITQSVIF  285

Query  513  CRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICT  572
              T+   D L             +    +    HGD   + R   +  F+ G  R LI T
Sbjct  286  VNTRRKVDWLTDKM---------RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITT  336

Query  573  DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
            D+ ARGID+  V  VIN  LP + +NY+HRIGR GR  R G++I+ V ++ E++   +  
Sbjct  337  DLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTSDDERMLSDI--  394

Query  633  SRGKGCYNTRLKE  645
               +  YN  ++E
Sbjct  395  ---QRFYNVVIEE  404


 Score = 83.6 bits (205),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 20/70 (29%), Positives = 34/70 (49%), Gaps = 0/70 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F  MG+   + + +    +  P+ IQ   I     G DV+  A++G+GKT  F   ++Q
Sbjct  41   SFDAMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ  100

Query  63   IVYETLKDQQ  72
             +   L D Q
Sbjct  101  QLDYELLDCQ  110


>sp|Q6Z2Z4|IF4A3_ORYSJ Eukaryotic initiation factor 4A-3 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os02g0146600 PE=1 SV=1
Length=414

 Score = 344 bits (881),  Expect = 3e-110, Method: Composition-based stats.
 Identities = 118/488 (24%), Positives = 200/488 (41%), Gaps = 93/488 (19%)

Query  166  GFGGTGKKSHNKQFDNYGEEFT-MHDTIGCYLDIDKGHVKFSKNGKDLGL-------AFE  217
            G    G +   K +D+  +E     D    +   D+    F   G    L        FE
Sbjct  3    GMAPEGSQFDAKHYDSKMQELLHQGDNEEFFTSYDEVFESFDDMGLQENLLRGIYAYGFE  62

Query  218  IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQV  277
             P  ++ + + P C                      G   + +A  G   K+    +  +
Sbjct  63   KPSAIQQRGIVPFC---------------------KGLDVIQQAQSG-TGKTATFCSGIL  100

Query  278  TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE  337
             Q  +     ++L++ P+RELA+Q    ++    Y+    ++    +GG + R+   +L 
Sbjct  101  QQLDYGLVECQSLVLAPTRELAQQIEKVMRALGDYLG---VKVHACVGGTSVREDQRILA  157

Query  338  NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD  397
            +GV +VVGTPGR+ D++    L    ++  VLDEAD +LS+G+ D I  +   +P     
Sbjct  158  SGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLP-----  212

Query  398  GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWE  457
              ++QV V SAT+   +  +++ K M+ P  + +K ++   + +    V V  +  +L  
Sbjct  213  -PKIQVGVFSATMPP-EALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEDWKL--  268

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
                                              L   Y   AI      Q++IF  T+ 
Sbjct  269  --------------------------------DTLCDLYETLAIT-----QSVIFVNTRR  291

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
              D L             +    +    HGD   + R   +  F+ G  R LI TD+ AR
Sbjct  292  KVDWLTDKM---------RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLAR  342

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
            GID+  V  VIN  LP + +NY+HRIGR GR  R G+AI+ V  + E++ + +     + 
Sbjct  343  GIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI-----QR  397

Query  638  CYNTRLKE  645
             YN  ++E
Sbjct  398  FYNVTIEE  405


 Score = 82.5 bits (202),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 0/70 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F +MG+   + + +    +  P+ IQ   I     G DV+  A++G+GKT  F   ++Q
Sbjct  42   SFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ  101

Query  63   IVYETLKDQQ  72
             +   L + Q
Sbjct  102  QLDYGLVECQ  111


>sp|P41378|IF4A_WHEAT Eukaryotic initiation factor 4A OS=Triticum 
aestivum OX=4565 PE=2 SV=1
Length=414

 Score = 343 bits (880),  Expect = 5e-110, Method: Composition-based stats.
 Identities = 123/488 (25%), Positives = 202/488 (41%), Gaps = 93/488 (19%)

Query  166  GFGGTGKKSHNKQFDNYGEEFT-MHDTIGCYLDIDKGHVKFSKNGKDLGL-------AFE  217
            G    G +   K +D+  +E     +T   +   D+ H  F   G    L        FE
Sbjct  3    GMAPEGSQFDAKNYDSKMQELLSQGETEEFFTSYDEVHESFDDMGLQENLLRGIYAYGFE  62

Query  218  IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQV  277
             P  ++ + + P C                      G   + +A  G   K+    +  +
Sbjct  63   KPSAIQQRGIVPFC---------------------KGLDVIQQAQSG-TGKTATFCSGIL  100

Query  278  TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE  337
             Q  +     +AL++ P+RELA+Q    ++    Y+    ++    +GG + R+   +L 
Sbjct  101  QQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLG---VKVHACVGGTSVREDQRILA  157

Query  338  NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD  397
            +GV +VVGTPGR+ D+V    L    ++  VLDEAD +LS+G+ D I  +   +P     
Sbjct  158  SGVHVVVGTPGRVFDIVRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPG----  213

Query  398  GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWE  457
              ++QV V SAT+   +  +++ K M+ P  + +K ++   + +    V V  +  +L  
Sbjct  214  --KIQVGVFSATMPP-EALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKL--  268

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
                                              L   Y   AI      Q++IF  T+ 
Sbjct  269  --------------------------------DTLCDLYETLAIT-----QSVIFVNTRR  291

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
              D L             +G   +    HGD   + R   +  F+ G  R LI TD+ AR
Sbjct  292  KVDWLTDKM---------RGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLAR  342

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
            GID+  V  VIN  LP + +NY HRIGR GR  R G+AI+ V  E E++ + +     + 
Sbjct  343  GIDVQQVSLVINYDLPTQPENYQHRIGRSGRFGRKGVAINFVTREDERMLFDI-----QK  397

Query  638  CYNTRLKE  645
             YN  ++E
Sbjct  398  FYNVVIEE  405


 Score = 82.5 bits (202),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 0/70 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F +MG+   + + +    +  P+ IQ   I     G DV+  A++G+GKT  F   ++Q
Sbjct  42   SFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ  101

Query  63   IVYETLKDQQ  72
             +   L + Q
Sbjct  102  QLDYGLVECQ  111


>sp|Q40465|IF411_TOBAC Eukaryotic initiation factor 4A-11 OS=Nicotiana 
tabacum OX=4097 PE=2 SV=1
Length=413

 Score = 342 bits (878),  Expect = 8e-110, Method: Composition-based stats.
 Identities = 114/487 (23%), Positives = 201/487 (41%), Gaps = 92/487 (19%)

Query  166  GFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGL-------AFEI  218
            G    G +   +Q+D    E    +    +   D+ +  F   G    L        FE 
Sbjct  3    GLAPEGSQFDARQYDAKMTELLGTEQQEFFTSYDEVYESFDAMGLQENLLRGIYAYGFEK  62

Query  219  PPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVT  278
            P  ++ + + P C                      G   + +A  G   K+    +  + 
Sbjct  63   PSAIQQRGIVPFC---------------------KGLDVIQQAQSG-TGKTATFCSGILQ  100

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            Q  +     +AL++ P+RELA+Q    ++    Y+    ++    +GG + R+   +L++
Sbjct  101  QLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLG---VKVHACVGGTSVREDQRILQS  157

Query  339  GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
            GV +VVGTPGR+ D++    L    ++  VLDEAD +LS+G+ D I  +   +P      
Sbjct  158  GVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLP------  211

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER  458
             ++QV V SAT+   +  +++ K M+ P  + +K ++   + +    V V+ +  +L   
Sbjct  212  PKIQVGVFSATMPP-EALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKL---  267

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
                                                E      +   + Q++IF  T+  
Sbjct  268  ------------------------------------ETLCDLYETLAITQSVIFVNTRRK  291

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
             D L             +G   +    HGD   + R   +  F+ G  R LI TD+ ARG
Sbjct  292  VDWLTDKM---------RGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG  342

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGC  638
            ID+  V  VIN  LP + +NY+HRIG  GR  R G++I+ V  + E++ + +     +  
Sbjct  343  IDVQQVSLVINYDLPTQPENYLHRIGHSGRFGRKGVSINFVTKDDERMLFDI-----QKF  397

Query  639  YNTRLKE  645
            YN  ++E
Sbjct  398  YNVVIEE  404


 Score = 82.1 bits (201),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 0/70 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F  MG+   + + +    +  P+ IQ   I     G DV+  A++G+GKT  F   ++Q
Sbjct  41   SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ  100

Query  63   IVYETLKDQQ  72
             +  +L + Q
Sbjct  101  QLDYSLVECQ  110


>sp|P41379|IF4A2_NICPL Eukaryotic initiation factor 4A-2 OS=Nicotiana 
plumbaginifolia OX=4092 PE=2 SV=1
Length=413

 Score = 342 bits (876),  Expect = 2e-109, Method: Composition-based stats.
 Identities = 116/493 (24%), Positives = 202/493 (41%), Gaps = 104/493 (21%)

Query  166  GFGGTGKKSHNKQFDNYGEEFT---MHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHM  222
            G    G +   +QFD    E       +    Y ++                        
Sbjct  3    GSAPEGSQFDARQFDAKMTELLGTEQEEFFTSYDEVYDS---------------------  41

Query  223  KNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQ----  276
                 F A  L+   L+  + +G E+     + G V   K  D  +++   SG  +    
Sbjct  42   -----FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLD--VIQQAQSGTGKTATF  94

Query  277  ----VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQ  332
                + Q  +     +AL++ P+RELA+Q    ++    Y+    ++    +GG + R+ 
Sbjct  95   CSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLG---VKVHACVGGTSVRED  151

Query  333  LSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP  392
              +L++GV +VVGTPGR+ D++    L    ++  VLDEAD +LS+G+ D I  +   +P
Sbjct  152  QRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLP  211

Query  393  QVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKT  452
                   ++QV V SAT+   +  +++ K M+ P  + +K ++   + +    V V+ + 
Sbjct  212  ------PKIQVGVFSATMPP-EALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEE  264

Query  453  DRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF  512
             +L                                       E      +   + Q++IF
Sbjct  265  WKL---------------------------------------ETLCDLYETLAITQSVIF  285

Query  513  CRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICT  572
              T+   D L             +    +    HGD   + R   +  F+ G  R LI T
Sbjct  286  VNTRRKVDWLTDKM---------RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITT  336

Query  573  DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
            D+ ARGID+  V  VIN  LP + +NY+HRIGR GR  R G+AI+ V  + E++ + +  
Sbjct  337  DLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINSVTKDDERMLFDI--  394

Query  633  SRGKGCYNTRLKE  645
               +  YN  ++E
Sbjct  395  ---QKFYNVVIEE  404


 Score = 81.3 bits (199),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 20/70 (29%), Positives = 35/70 (50%), Gaps = 0/70 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F  MG+   + + +    +  P+ IQ   I     G DV+  A++G+GKT  F   V+Q
Sbjct  41   SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQ  100

Query  63   IVYETLKDQQ  72
             +  +L + Q
Sbjct  101  QLDYSLVECQ  110


>sp|Q10055|FAL1_SCHPO ATP-dependent RNA helicase fal1 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=tif412 
PE=1 SV=1
Length=394

 Score = 341 bits (874),  Expect = 2e-109, Method: Composition-based stats.
 Identities = 112/442 (25%), Positives = 185/442 (42%), Gaps = 71/442 (16%)

Query  212  LGLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKS  269
              +       +   + F    LK   L+  + +G E          + + K  D      
Sbjct  7    ENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQ  66

Query  270  QHSGNAQVTQTKFLP------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLI  323
              +G         L          +ALI+ P+RELA Q  N +     +++   ++    
Sbjct  67   SGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMN---VQCHAC  123

Query  324  IGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDF  383
            IGG +  + +  L+ G  +V GTPGR+ D++    L    V+ L+LDEAD LL+QG+ + 
Sbjct  124  IGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQ  183

Query  384  INRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHH  443
            I  ++  +P  T      QV+V SATL   DV +++ K    P  + +K ++   + +  
Sbjct  184  IYDIYRYLPPGT------QVVVVSATLP-QDVLEMTNKFTTNPVRILVKRDELTLEGLKQ  236

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
              + V  +  +                                     L   Y    I  
Sbjct  237  YFIAVEKEEWKF----------------------------------DTLCDLYDTLTIT-  261

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
                QA+IFC ++   D L +   +           F+   +HG+    ER   ++ F++
Sbjct  262  ----QAVIFCNSRRKVDWLTEKMREA---------NFTVTSMHGEMPQKERDAIMQDFRQ  308

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
            G+ R LICTD+ ARGID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V  E 
Sbjct  309  GNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNED  368

Query  624  EKVWYHVCSSRGKGCYNTRLKE  645
             ++   +     +  Y+T + E
Sbjct  369  VRILRDI-----EQYYSTVIDE  385


 Score = 99.4 bits (246),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 28/134 (21%), Positives = 55/134 (41%), Gaps = 4/134 (3%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +++F EM +  ++ + +    +  P+ +Q+ +I  I  G DV+  A++G+GKT  FSI +
Sbjct  20   VSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGI  79

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEW-  119
            +Q +  +++D Q      T             +  +      A    G    +   K   
Sbjct  80   LQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHAC-IGGTSVGNDIKKLDY  138

Query  120  --HGCRATKGLMKG  131
              H    T G +  
Sbjct  139  GQHVVSGTPGRVTD  152


>sp|P0CQ72|FAL1_CRYNJ ATP-dependent RNA helicase FAL1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=FAL1 PE=3 SV=1
Length=396

 Score = 340 bits (871),  Expect = 6e-109, Method: Composition-based stats.
 Identities = 115/446 (26%), Positives = 187/446 (42%), Gaps = 71/446 (16%)

Query  208  NGKDLGLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGY  265
            N  D  L FE    +     F A  LK   L+  + +  E+     +   + + +  D  
Sbjct  5    NVGDDKLVFESSEAVTVAPTFEALNLKEDLLRGIYAYNFEKPSAIQQRAIIPIIRGRDVI  64

Query  266  IVKSQHSGN------AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLR  319
                  +G       + +          +AL++ P+RELA Q    +     Y++   + 
Sbjct  65   AQAQSGTGKTATFSISMLQSIDTNLRETQALVLSPTRELAVQIQTVVLALGDYMN---VS  121

Query  320  ELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQG  379
                IGG +  + +  LE G  +V GTPGR+ D++    L    ++ L+LDE+D LL++G
Sbjct  122  CHACIGGTSVGEDIRKLEAGQQVVSGTPGRVFDMIRRRNLRTKDIKMLILDESDELLNKG  181

Query  380  YSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPD  439
            + D I  ++  +P  T      QV+V SATL   DV +++ K M  P  + +K ++   +
Sbjct  182  FKDQIYDIYRYLPPAT------QVVVVSATLP-HDVLEMTTKFMTDPVRILVKRDELTLE  234

Query  440  TVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVR  499
             +    V V  +  +                                     L   Y   
Sbjct  235  GIKQFFVAVEKEDWKF----------------------------------DTLCDLYDTL  260

Query  500  AIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLE  559
             I      QA+IFC T+   D L +   +           F+   +HG+    ER   + 
Sbjct  261  TIT-----QAVIFCNTRRKVDWLTEKMREA---------NFTVSSMHGEMVQKERDAIMA  306

Query  560  RFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
             F+ G  R LI TDV ARGID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V
Sbjct  307  EFRGGQSRVLITTDVWARGIDVQQVSLVINYDLPTSRENYLHRIGRSGRFGRKGVAINFV  366

Query  620  ATEKEKVWYHVCSSRGKGCYNTRLKE  645
              +  ++   +     +  Y+T++ E
Sbjct  367  TVDDVRILRDI-----EQYYSTQIDE  387


 Score = 99.0 bits (245),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 1/125 (1%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F  + +  ++ + +   ++  P+ IQ  +I  I+ G DV+  A++G+GKT  FSI ++Q
Sbjct  24   TFEALNLKEDLLRGIYAYNFEKPSAIQQRAIIPIIRGRDVIAQAQSGTGKTATFSISMLQ  83

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGC  122
             +   L++ Q      T             +  Y   S  A    G        K   G 
Sbjct  84   SIDTNLRETQALVLSPTRELAVQIQTVVLALGDYMNVSCHAC-IGGTSVGEDIRKLEAGQ  142

Query  123  RATKG  127
            +   G
Sbjct  143  QVVSG  147


>sp|P0CQ73|FAL1_CRYNB ATP-dependent RNA helicase FAL1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=FAL1 PE=3 SV=1
Length=396

 Score = 340 bits (871),  Expect = 6e-109, Method: Composition-based stats.
 Identities = 115/446 (26%), Positives = 187/446 (42%), Gaps = 71/446 (16%)

Query  208  NGKDLGLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGY  265
            N  D  L FE    +     F A  LK   L+  + +  E+     +   + + +  D  
Sbjct  5    NVGDDKLVFESSEAVTVAPTFEALNLKEDLLRGIYAYNFEKPSAIQQRAIIPIIRGRDVI  64

Query  266  IVKSQHSGN------AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLR  319
                  +G       + +          +AL++ P+RELA Q    +     Y++   + 
Sbjct  65   AQAQSGTGKTATFSISMLQSIDTNLRETQALVLSPTRELAVQIQTVVLALGDYMN---VS  121

Query  320  ELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQG  379
                IGG +  + +  LE G  +V GTPGR+ D++    L    ++ L+LDE+D LL++G
Sbjct  122  CHACIGGTSVGEDIRKLEAGQQVVSGTPGRVFDMIRRRNLRTKDIKMLILDESDELLNKG  181

Query  380  YSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPD  439
            + D I  ++  +P  T      QV+V SATL   DV +++ K M  P  + +K ++   +
Sbjct  182  FKDQIYDIYRYLPPAT------QVVVVSATLP-HDVLEMTTKFMTDPVRILVKRDELTLE  234

Query  440  TVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVR  499
             +    V V  +  +                                     L   Y   
Sbjct  235  GIKQFFVAVEKEDWKF----------------------------------DTLCDLYDTL  260

Query  500  AIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLE  559
             I      QA+IFC T+   D L +   +           F+   +HG+    ER   + 
Sbjct  261  TIT-----QAVIFCNTRRKVDWLTEKMREA---------NFTVSSMHGEMVQKERDAIMA  306

Query  560  RFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
             F+ G  R LI TDV ARGID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V
Sbjct  307  EFRGGQSRVLITTDVWARGIDVQQVSLVINYDLPTSRENYLHRIGRSGRFGRKGVAINFV  366

Query  620  ATEKEKVWYHVCSSRGKGCYNTRLKE  645
              +  ++   +     +  Y+T++ E
Sbjct  367  TVDDVRILRDI-----EQYYSTQIDE  387


 Score = 99.0 bits (245),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 1/125 (1%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F  + +  ++ + +   ++  P+ IQ  +I  I+ G DV+  A++G+GKT  FSI ++Q
Sbjct  24   TFEALNLKEDLLRGIYAYNFEKPSAIQQRAIIPIIRGRDVIAQAQSGTGKTATFSISMLQ  83

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGC  122
             +   L++ Q      T             +  Y   S  A    G        K   G 
Sbjct  84   SIDTNLRETQALVLSPTRELAVQIQTVVLALGDYMNVSCHAC-IGGTSVGEDIRKLEAGQ  142

Query  123  RATKG  127
            +   G
Sbjct  143  QVVSG  147


>sp|Q9VHS8|IF4A3_DROME Eukaryotic initiation factor 4A-III OS=Drosophila 
melanogaster OX=7227 GN=CG7483 PE=1 SV=1
Length=399

 Score = 339 bits (870),  Expect = 9e-109, Method: Composition-based stats.
 Identities = 113/441 (26%), Positives = 185/441 (42%), Gaps = 71/441 (16%)

Query  213  GLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
             + FE    ++    F A  LK   L+  + +G E+     +     + K  D       
Sbjct  13   NVEFETSEDVEVIPTFNAMNLKEELLRGIYAYGFEKPSAIQQRSITPIVKGRDVIAQAQS  72

Query  271  HSGNAQVTQTKFLP------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
             +G         L          + L + P+RELA Q    I       D   ++  + I
Sbjct  73   GTGKTATFSISILQSLDTTLRETQVLCLSPTRELAVQIQKVILALG---DMMNVQCHVCI  129

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG    + +  L+ G  IV GTPGR+ D++    L    ++ LVLDEAD +L++G+ + I
Sbjct  130  GGTNLGEDIRKLDYGQHIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQI  189

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
              ++  +P  T      QV++ SATL   ++ +++ K M  P  + +K ++   + +   
Sbjct  190  YDVYRYLPPAT------QVVLISATLP-HEILEMTSKFMTDPIRILVKRDELTLEGIKQF  242

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
             V V  +  +                                     L   Y    I   
Sbjct  243  FVAVEREEWKF----------------------------------DTLCDLYDTLTIT--  266

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
               QA+IFC TK   D L +   +           F+   +HGD    ER + ++ F+ G
Sbjct  267  ---QAVIFCNTKRKVDWLTEKMREA---------NFTVSSMHGDMPQKERDEIMKEFRAG  314

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
              R LI TDV ARGID+  V  VIN  LP+ ++ Y+HRIGR GR  R G+AI+ V ++  
Sbjct  315  QSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDI  374

Query  625  KVWYHVCSSRGKGCYNTRLKE  645
            ++   +     +  Y+T++ E
Sbjct  375  RILRDI-----EQYYSTQIDE  390


 Score = 99.4 bits (246),  Expect = 5e-21, Method: Composition-based stats.
 Identities = 32/130 (25%), Positives = 53/130 (41%), Gaps = 2/130 (2%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F+ M +  E+ + +    +  P+ IQ  SI  I+ G DV+  A++G+GKT  FSI +
Sbjct  25   IPTFNAMNLKEELLRGIYAYGFEKPSAIQQRSITPIVKGRDVIAQAQSGTGKTATFSISI  84

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGS-AFAIGSDGLCCQSREV-KE  118
            +Q +  TL++ Q      T             +           IG   L    R++   
Sbjct  85   LQSLDTTLRETQVLCLSPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDYG  144

Query  119  WHGCRATKGL  128
             H    T G 
Sbjct  145  QHIVSGTPGR  154


>sp|Q91VC3|IF4A3_MOUSE Eukaryotic initiation factor 4A-III OS=Mus 
musculus OX=10090 GN=Eif4a3 PE=1 SV=3
Length=411

 Score = 339 bits (868),  Expect = 2e-108, Method: Composition-based stats.
 Identities = 109/441 (25%), Positives = 185/441 (42%), Gaps = 71/441 (16%)

Query  213  GLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
             + FE    +     F    L+   L+  + +G E+     +     + K  D       
Sbjct  25   KVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQS  84

Query  271  HSGNAQVTQTKFLP------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
             +G         L          +ALI+ P+RELA Q    +     Y++   ++    I
Sbjct  85   GTGKTATFSVSVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMN---VQCHACI  141

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG    + +  L+ G  +V GTPGR+ D++    L    ++ LVLDEAD +L++G+ + I
Sbjct  142  GGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQI  201

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
              ++  +P  T      QV++ SATL   ++ +++ K M  P  + +K ++   + +   
Sbjct  202  YDVYRYLPPAT------QVVLISATLP-HEILEMTNKFMTDPIRILVKRDELTLEGIKQF  254

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
             V V  +  +                                     L   Y    I   
Sbjct  255  FVAVEREEWKF----------------------------------DTLCDLYDTLTIT--  278

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
               QA+IFC TK   D L +   +           F+   +HGD    ER+  ++ F+ G
Sbjct  279  ---QAVIFCNTKRKVDWLTEKMREA---------NFTVSSMHGDMPQKERESIMKEFRSG  326

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
              R LI TDV ARG+D+  V  +IN  LP+ ++ Y+HRIGR GR  R G+AI+ V  +  
Sbjct  327  ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI  386

Query  625  KVWYHVCSSRGKGCYNTRLKE  645
            ++   +     +  Y+T++ E
Sbjct  387  RILRDI-----EQYYSTQIDE  402


 Score = 96.0 bits (237),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 29/128 (23%), Positives = 53/128 (41%), Gaps = 2/128 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F  MG+  ++ + +    +  P+ IQ  +I  I+ G DV+  +++G+GKT  FS+ V+Q
Sbjct  39   TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQ  98

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA-IGSDGLCCQSREV-KEWH  120
             +   +++ Q      T             +  Y      A IG   +    R++    H
Sbjct  99   CLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQH  158

Query  121  GCRATKGL  128
                T G 
Sbjct  159  VVAGTPGR  166


>sp|Q3B8Q2|IF4A3_RAT Eukaryotic initiation factor 4A-III OS=Rattus 
norvegicus OX=10116 GN=Eif4a3 PE=1 SV=1
Length=411

 Score = 338 bits (867),  Expect = 3e-108, Method: Composition-based stats.
 Identities = 109/441 (25%), Positives = 185/441 (42%), Gaps = 71/441 (16%)

Query  213  GLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
             + FE    +     F    L+   L+  + +G E+     +     + K  D       
Sbjct  25   KVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQS  84

Query  271  HSGNAQVTQTKFLP------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
             +G         L          +ALI+ P+RELA Q    +     Y++   ++    I
Sbjct  85   GTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMN---VQCHACI  141

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG    + +  L+ G  +V GTPGR+ D++    L    ++ LVLDEAD +L++G+ + I
Sbjct  142  GGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQI  201

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
              ++  +P  T      QV++ SATL   ++ +++ K M  P  + +K ++   + +   
Sbjct  202  YDVYRYLPPAT------QVVLISATLP-HEILEMTNKFMTDPIRILVKRDELTLEGIKQF  254

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
             V V  +  +                                     L   Y    I   
Sbjct  255  FVAVEREEWKF----------------------------------DTLCDLYDTLTIT--  278

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
               QA+IFC TK   D L +   +           F+   +HGD    ER+  ++ F+ G
Sbjct  279  ---QAVIFCNTKRKVDWLTEKMREA---------NFTVSSMHGDMPQKERESIMKEFRSG  326

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
              R LI TDV ARG+D+  V  +IN  LP+ ++ Y+HRIGR GR  R G+AI+ V  +  
Sbjct  327  ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI  386

Query  625  KVWYHVCSSRGKGCYNTRLKE  645
            ++   +     +  Y+T++ E
Sbjct  387  RILRDI-----EQYYSTQIDE  402


 Score = 97.1 bits (240),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 2/128 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F  MG+  ++ + +    +  P+ IQ  +I  I+ G DV+  +++G+GKT  FSI V+Q
Sbjct  39   TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ  98

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA-IGSDGLCCQSREV-KEWH  120
             +   +++ Q      T             +  Y      A IG   +    R++    H
Sbjct  99   CLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQH  158

Query  121  GCRATKGL  128
                T G 
Sbjct  159  VVAGTPGR  166


>sp|A6M931|IF4A3_PIG Eukaryotic initiation factor 4A-III OS=Sus 
scrofa OX=9823 GN=EIF4A3 PE=2 SV=1
Length=411

 Score = 338 bits (867),  Expect = 3e-108, Method: Composition-based stats.
 Identities = 109/441 (25%), Positives = 185/441 (42%), Gaps = 71/441 (16%)

Query  213  GLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
             + FE    +     F    L+   L+  + +G E+     +     + K  D       
Sbjct  25   KVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQS  84

Query  271  HSGNAQVTQTKFLP------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
             +G         L          +ALI+ P+RELA Q    +     Y++   ++    I
Sbjct  85   GTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMN---VQCHACI  141

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG    + +  L+ G  +V GTPGR+ D++    L    ++ LVLDEAD +L++G+ + I
Sbjct  142  GGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQI  201

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
              ++  +P  T      QV++ SATL   ++ +++ K M  P  + +K ++   + +   
Sbjct  202  YDVYRYLPPAT------QVVLISATLP-HEILEMTNKFMTDPIRILVKRDELTLEGIKQF  254

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
             V V  +  +                                     L   Y    I   
Sbjct  255  FVAVEREEWKF----------------------------------DTLCDLYDTLTIT--  278

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
               QA+IFC TK   D L +   +           F+   +HGD    ER+  ++ F+ G
Sbjct  279  ---QAVIFCNTKRKVDWLTEKMREA---------NFTVSSMHGDMPQKERESIMKEFRSG  326

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
              R LI TDV ARG+D+  V  +IN  LP+ ++ Y+HRIGR GR  R G+AI+ V  +  
Sbjct  327  ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI  386

Query  625  KVWYHVCSSRGKGCYNTRLKE  645
            ++   +     +  Y+T++ E
Sbjct  387  RILRDI-----EQYYSTQIDE  402


 Score = 97.1 bits (240),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 2/128 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F  MG+  ++ + +    +  P+ IQ  +I  I+ G DV+  +++G+GKT  FSI V+Q
Sbjct  39   TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ  98

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA-IGSDGLCCQSREV-KEWH  120
             +   +++ Q      T             +  Y      A IG   +    R++    H
Sbjct  99   CLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQH  158

Query  121  GCRATKGL  128
                T G 
Sbjct  159  VVAGTPGR  166


>sp|Q2NL22|IF4A3_BOVIN Eukaryotic initiation factor 4A-III OS=Bos 
taurus OX=9913 GN=EIF4A3 PE=2 SV=3
Length=411

 Score = 338 bits (867),  Expect = 3e-108, Method: Composition-based stats.
 Identities = 109/441 (25%), Positives = 185/441 (42%), Gaps = 71/441 (16%)

Query  213  GLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
             + FE    +     F    L+   L+  + +G E+     +     + K  D       
Sbjct  25   KVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQS  84

Query  271  HSGNAQVTQTKFLP------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
             +G         L          +ALI+ P+RELA Q    +     Y++   ++    I
Sbjct  85   GTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMN---VQCHACI  141

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG    + +  L+ G  +V GTPGR+ D++    L    ++ LVLDEAD +L++G+ + I
Sbjct  142  GGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQI  201

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
              ++  +P  T      QV++ SATL   ++ +++ K M  P  + +K ++   + +   
Sbjct  202  YDVYRYLPPAT------QVVLISATLP-HEILEMTNKFMTDPIRILVKRDELTLEGIKQF  254

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
             V V  +  +                                     L   Y    I   
Sbjct  255  FVAVEREEWKF----------------------------------DTLCDLYDTLTIT--  278

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
               QA+IFC TK   D L +   +           F+   +HGD    ER+  ++ F+ G
Sbjct  279  ---QAVIFCNTKRKVDWLTEKMREA---------NFTVSSMHGDMPQKERESIMKEFRSG  326

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
              R LI TDV ARG+D+  V  +IN  LP+ ++ Y+HRIGR GR  R G+AI+ V  +  
Sbjct  327  ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI  386

Query  625  KVWYHVCSSRGKGCYNTRLKE  645
            ++   +     +  Y+T++ E
Sbjct  387  RILRDI-----EQYYSTQIDE  402


 Score = 97.1 bits (240),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 2/128 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F  MG+  ++ + +    +  P+ IQ  +I  I+ G DV+  +++G+GKT  FSI V+Q
Sbjct  39   TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ  98

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA-IGSDGLCCQSREV-KEWH  120
             +   +++ Q      T             +  Y      A IG   +    R++    H
Sbjct  99   CLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQH  158

Query  121  GCRATKGL  128
                T G 
Sbjct  159  VVAGTPGR  166


>sp|P38919|IF4A3_HUMAN Eukaryotic initiation factor 4A-III OS=Homo 
sapiens OX=9606 GN=EIF4A3 PE=1 SV=4
Length=411

 Score = 338 bits (867),  Expect = 4e-108, Method: Composition-based stats.
 Identities = 109/441 (25%), Positives = 185/441 (42%), Gaps = 71/441 (16%)

Query  213  GLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
             + FE    +     F    L+   L+  + +G E+     +     + K  D       
Sbjct  25   KVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQS  84

Query  271  HSGNAQVTQTKFLP------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
             +G         L          +ALI+ P+RELA Q    +     Y++   ++    I
Sbjct  85   GTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMN---VQCHACI  141

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG    + +  L+ G  +V GTPGR+ D++    L    ++ LVLDEAD +L++G+ + I
Sbjct  142  GGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQI  201

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
              ++  +P  T      QV++ SATL   ++ +++ K M  P  + +K ++   + +   
Sbjct  202  YDVYRYLPPAT------QVVLISATLP-HEILEMTNKFMTDPIRILVKRDELTLEGIKQF  254

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
             V V  +  +                                     L   Y    I   
Sbjct  255  FVAVEREEWKF----------------------------------DTLCDLYDTLTIT--  278

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
               QA+IFC TK   D L +   +           F+   +HGD    ER+  ++ F+ G
Sbjct  279  ---QAVIFCNTKRKVDWLTEKMREA---------NFTVSSMHGDMPQKERESIMKEFRSG  326

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
              R LI TDV ARG+D+  V  +IN  LP+ ++ Y+HRIGR GR  R G+AI+ V  +  
Sbjct  327  ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI  386

Query  625  KVWYHVCSSRGKGCYNTRLKE  645
            ++   +     +  Y+T++ E
Sbjct  387  RILRDI-----EQYYSTQIDE  402


 Score = 96.7 bits (239),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 2/128 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F  MG+  ++ + +    +  P+ IQ  +I  I+ G DV+  +++G+GKT  FSI V+Q
Sbjct  39   TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ  98

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA-IGSDGLCCQSREV-KEWH  120
             +   +++ Q      T             +  Y      A IG   +    R++    H
Sbjct  99   CLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQH  158

Query  121  GCRATKGL  128
                T G 
Sbjct  159  VVAGTPGR  166


>sp|B5FZY7|IF4A3_TAEGU Eukaryotic initiation factor 4A-III OS=Taeniopygia 
guttata OX=59729 GN=EIF4A3 PE=2 SV=1
Length=410

 Score = 338 bits (866),  Expect = 6e-108, Method: Composition-based stats.
 Identities = 109/441 (25%), Positives = 185/441 (42%), Gaps = 71/441 (16%)

Query  213  GLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
             + FE    +     F    L+   L+  + +G E+     +     + K  D       
Sbjct  24   KVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQS  83

Query  271  HSGNAQVTQTKFLP------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
             +G         L          +ALI+ P+RELA Q    +     Y++   ++    I
Sbjct  84   GTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMN---VQCHACI  140

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG    + +  L+ G  +V GTPGR+ D++    L    ++ LVLDEAD +L++G+ + I
Sbjct  141  GGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQI  200

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
              ++  +P  T      QV++ SATL   ++ +++ K M  P  + +K ++   + +   
Sbjct  201  YDVYRYLPPAT------QVVLISATLP-HEILEMTNKFMTDPIRILVKRDELTLEGIKQF  253

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
             V V  +  +                                     L   Y    I   
Sbjct  254  FVAVEREEWKF----------------------------------DTLCDLYDTLTIT--  277

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
               QA+IFC TK   D L +   +           F+   +HGD    ER+  ++ F+ G
Sbjct  278  ---QAVIFCNTKRKVDWLTEKMREA---------NFTVSSMHGDMPQKERESIMKEFRSG  325

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
              R LI TDV ARG+D+  V  +IN  LP+ ++ Y+HRIGR GR  R G+AI+ V  +  
Sbjct  326  ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI  385

Query  625  KVWYHVCSSRGKGCYNTRLKE  645
            ++   +     +  Y+T++ E
Sbjct  386  RILRDI-----EQYYSTQIDE  401


 Score = 96.7 bits (239),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 2/128 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F  MG+  ++ + +    +  P+ IQ  +I  I+ G DV+  +++G+GKT  FSI V+Q
Sbjct  38   TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ  97

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA-IGSDGLCCQSREV-KEWH  120
             +   +++ Q      T             +  Y      A IG   +    R++    H
Sbjct  98   CLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQH  157

Query  121  GCRATKGL  128
                T G 
Sbjct  158  VVAGTPGR  165


>sp|Q5ZM36|IF4A3_CHICK Eukaryotic initiation factor 4A-III OS=Gallus 
gallus OX=9031 GN=EIF4A3 PE=2 SV=1
Length=412

 Score = 337 bits (865),  Expect = 6e-108, Method: Composition-based stats.
 Identities = 109/441 (25%), Positives = 185/441 (42%), Gaps = 71/441 (16%)

Query  213  GLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
             + FE    +     F    L+   L+  + +G E+     +     + K  D       
Sbjct  26   KVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQS  85

Query  271  HSGNAQVTQTKFLP------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
             +G         L          +ALI+ P+RELA Q    +     Y++   ++    I
Sbjct  86   GTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMN---VQCHACI  142

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG    + +  L+ G  +V GTPGR+ D++    L    ++ LVLDEAD +L++G+ + I
Sbjct  143  GGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQI  202

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
              ++  +P  T      QV++ SATL   ++ +++ K M  P  + +K ++   + +   
Sbjct  203  YDVYRYLPPAT------QVVLISATLP-HEILEMTNKFMTDPIRILVKRDELTLEGIKQF  255

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
             V V  +  +                                     L   Y    I   
Sbjct  256  FVAVEREEWKF----------------------------------DTLCDLYDTLTIT--  279

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
               QA+IFC TK   D L +   +           F+   +HGD    ER+  ++ F+ G
Sbjct  280  ---QAVIFCNTKRKVDWLTEKMREA---------NFTVSSMHGDMPQKERESIMKEFRSG  327

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
              R LI TDV ARG+D+  V  +IN  LP+ ++ Y+HRIGR GR  R G+AI+ V  +  
Sbjct  328  ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI  387

Query  625  KVWYHVCSSRGKGCYNTRLKE  645
            ++   +     +  Y+T++ E
Sbjct  388  RILRDI-----EQYYSTQIDE  403


 Score = 96.7 bits (239),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 2/128 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F  MG+  ++ + +    +  P+ IQ  +I  I+ G DV+  +++G+GKT  FSI V+Q
Sbjct  40   TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ  99

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA-IGSDGLCCQSREV-KEWH  120
             +   +++ Q      T             +  Y      A IG   +    R++    H
Sbjct  100  CLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQH  159

Query  121  GCRATKGL  128
                T G 
Sbjct  160  VVAGTPGR  167


>sp|Q9CAI7|IF4A3_ARATH Eukaryotic initiation factor 4A-3 OS=Arabidopsis 
thaliana OX=3702 GN=TIF4A-3 PE=1 SV=1
Length=414

 Score = 337 bits (863),  Expect = 2e-107, Method: Composition-based stats.
 Identities = 118/490 (24%), Positives = 202/490 (41%), Gaps = 97/490 (20%)

Query  166  GFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQ  225
            G    G +   +QFD                   +G   F  N            + +  
Sbjct  3    GMASDGTQYDPRQFDTKMNAILGE----------EGEETFYTN------------YDEVC  40

Query  226  ALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQ-------  276
              F A  L+   L+  + +G E+     + G +   K  D  +++   SG  +       
Sbjct  41   DSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLD--VIQQAQSGTGKTATFCSG  98

Query  277  -VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
             + Q        +AL++ P+RELA+Q    ++    Y+    ++    +GG + R+   V
Sbjct  99   VLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYLG---VKAQACVGGTSVREDQRV  155

Query  336  LENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
            L++GV +VVGTPGR+ DL+    L    ++  VLDEAD +LS+G+ D I  +   +P   
Sbjct  156  LQSGVHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLP---  212

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL  455
                ++QV V SAT+   +  +++ K M+ P  + +K ++   + +    V V+ +  +L
Sbjct  213  ---SKVQVGVFSATMPP-EALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKL  268

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRT  515
                                                   E      +   + Q++IF  T
Sbjct  269  ---------------------------------------ETLCDLYETLAITQSVIFVNT  289

Query  516  KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA  575
            +   D L             +    +    HGD   + R   +  F+ G  R LI TD+ 
Sbjct  290  RRKVDWLTDKM---------RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL  340

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRG  635
            ARGID+  V  VIN  LP + +NY+HRIGR GR  R G+AI+ + +E E++   +     
Sbjct  341  ARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMMADI-----  395

Query  636  KGCYNTRLKE  645
            +  YN  ++E
Sbjct  396  QRFYNVVVEE  405


 Score = 78.6 bits (192),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 20/70 (29%), Positives = 35/70 (50%), Gaps = 0/70 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F  M + P++ + +    +  P+ IQ   I     G DV+  A++G+GKT  F   V+Q
Sbjct  42   SFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQ  101

Query  63   IVYETLKDQQ  72
             +  +L   Q
Sbjct  102  QLDISLVQCQ  111


>sp|P27639|IF4A_CAEEL Eukaryotic initiation factor 4A OS=Caenorhabditis 
elegans OX=6239 GN=inf-1 PE=2 SV=1
Length=402

 Score = 336 bits (861),  Expect = 2e-107, Method: Composition-based stats.
 Identities = 119/430 (28%), Positives = 190/430 (44%), Gaps = 71/430 (17%)

Query  228  FPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN------AQVTQ  279
            F    LK   L+  + FG E+     K   V  +   D        +G       + + +
Sbjct  31   FDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQR  90

Query  280  TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
                    +AL++ P+RELA+Q    +    +Y++   +  L  IGG + RD    LE G
Sbjct  91   IDHEDPHVQALVMAPTRELAQQIQKVMSALGEYLN---VNILPCIGGTSVRDDQRKLEAG  147

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
            + +VVGTPGR+ D+++   L+ S+++  VLDEAD +LS+G+ D I  +   +PQ      
Sbjct  148  IHVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEMLSRGFKDQIYEVFRSMPQ------  201

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
             +QV++ SAT+ S +V  ++ + M  P  + +K ++   + +    + V     +     
Sbjct  202  DVQVVLLSATMPS-EVLDVTNRFMRNPIRILVKKDELTLEGIRQFYINVQKDEWKF----  256

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
                                            L   Y V  +      QA+IFC T+   
Sbjct  257  ------------------------------DCLCDLYNVVNVT-----QAVIFCNTRRKV  281

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            D L +   +         +QF+  CLHGD    ER   +  F+ G  R LI TD+ ARGI
Sbjct  282  DTLTEKMTE---------NQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITTDILARGI  332

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCY  639
            D+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V     +    + S      Y
Sbjct  333  DVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQLKEIES-----YY  387

Query  640  NTRLKEDGGC  649
             T+++E    
Sbjct  388  TTQIEEMPES  397


 Score = 89.4 bits (220),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 2/133 (2%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F +M +  E+ + +    +  P+ IQ  +I     G DV+  A++G+GKT  FS+ +
Sbjct  28   VESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSI  87

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA-IGSDGLCCQSREVKE-  118
            +Q +       Q      T             +  Y   +    IG   +    R+++  
Sbjct  88   LQRIDHEDPHVQALVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLEAG  147

Query  119  WHGCRATKGLMKG  131
             H    T G +  
Sbjct  148  IHVVVGTPGRVGD  160


>sp|B7ZTW1|IF4A3_XENTR Eukaryotic initiation factor 4A-III OS=Xenopus 
tropicalis OX=8364 GN=eif4a3 PE=2 SV=1
Length=415

 Score = 336 bits (862),  Expect = 2e-107, Method: Composition-based stats.
 Identities = 108/441 (24%), Positives = 184/441 (42%), Gaps = 71/441 (16%)

Query  213  GLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
             + FE    +     F    L+   L+  + +G E+     +     + K  D       
Sbjct  29   KVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQS  88

Query  271  HSGNAQ------VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
             +G         +          +ALI+ P+RELA Q    +     Y++   ++    I
Sbjct  89   GTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMN---VQCHACI  145

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG    + +  L+ G  +V GTPGR+ D++    L    ++ LVLDEAD +L++G+ + I
Sbjct  146  GGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQI  205

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
              ++  +P  T      QV + SATL   ++ +++ K M  P  + +K ++   + +   
Sbjct  206  YDVYRYLPPAT------QVCLISATLP-HEILEMTNKFMTDPIRILVKRDELTLEGIKQF  258

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
             V V  +  +                                     L   Y    I   
Sbjct  259  FVAVEREEWKF----------------------------------DTLCDLYDTLTIT--  282

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
               QA+IFC TK   D L +   +           F+   +HGD    ER+  ++ F+ G
Sbjct  283  ---QAVIFCNTKRKVDWLTEKMREA---------NFTVSSMHGDMPQKERESIMKEFRSG  330

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
              R LI TDV ARG+D+  V  +IN  LP+ ++ Y+HRIGR GR  R G+AI+ V  +  
Sbjct  331  ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI  390

Query  625  KVWYHVCSSRGKGCYNTRLKE  645
            ++   +     +  Y+T++ E
Sbjct  391  RILRDI-----EQYYSTQIDE  406


 Score = 97.1 bits (240),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 29/128 (23%), Positives = 53/128 (41%), Gaps = 2/128 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F  MG+  ++ + +    +  P+ IQ  +I  I+ G DV+  +++G+GKT  F + V+Q
Sbjct  43   TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQ  102

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA-IGSDGLCCQSREV-KEWH  120
             +   +++ Q      T    G        +  Y      A IG   +    R++    H
Sbjct  103  CLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQH  162

Query  121  GCRATKGL  128
                T G 
Sbjct  163  VVAGTPGR  170


>sp|B5DG42|IF4A3_SALSA Eukaryotic initiation factor 4A-III OS=Salmo 
salar OX=8030 GN=eif4a3 PE=2 SV=1
Length=406

 Score = 335 bits (860),  Expect = 3e-107, Method: Composition-based stats.
 Identities = 108/441 (24%), Positives = 184/441 (42%), Gaps = 71/441 (16%)

Query  213  GLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
             + FE    +     F    L+   L+  + +G E+     +     + K  D       
Sbjct  20   KIEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQS  79

Query  271  HSGNAQ------VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
             +G         +          +ALI+ P+RELA Q    +     Y++   ++    I
Sbjct  80   GTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMN---VQCHSCI  136

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG    + +  L+ G  +V GTPGR+ D++    L    ++ LVLDEAD +L++G+ + I
Sbjct  137  GGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQI  196

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
              ++  +P  T      QV + SATL   ++ +++ K M  P  + +K ++   + +   
Sbjct  197  YDVYRYLPPAT------QVCLISATLP-HEILEMTNKFMTDPIRILVKRDELTLEGIKQF  249

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
             V V  +  +                                     L   Y    I   
Sbjct  250  FVAVEREEWKF----------------------------------DTLCDLYDTLTIT--  273

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
               QA+IFC TK   D L +   +           F+   +HGD    ER+  ++ F+ G
Sbjct  274  ---QAVIFCNTKRKVDWLTEKMREA---------NFTVSSMHGDMPQKERESIMKEFRSG  321

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
              R LI TDV ARG+D+  V  +IN  LP+ ++ Y+HRIGR GR  R G+AI+ V  +  
Sbjct  322  ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI  381

Query  625  KVWYHVCSSRGKGCYNTRLKE  645
            ++   +     +  Y+T++ E
Sbjct  382  RILRDI-----EQYYSTQIDE  397


 Score = 96.4 bits (238),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 28/128 (22%), Positives = 53/128 (41%), Gaps = 2/128 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F  MG+  ++ + +    +  P+ IQ  +I  I+ G DV+  +++G+GKT  F + V+Q
Sbjct  34   TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQ  93

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA-IGSDGLCCQSREV-KEWH  120
             +   +++ Q      T    G        +  Y      + IG   +    R++    H
Sbjct  94   CLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHSCIGGTNVGEDIRKLDYGQH  153

Query  121  GCRATKGL  128
                T G 
Sbjct  154  VVAGTPGR  161


>sp|Q7ZVA6|IF4A3_DANRE Eukaryotic initiation factor 4A-III OS=Danio 
rerio OX=7955 GN=eif4a3 PE=2 SV=1
Length=406

 Score = 335 bits (860),  Expect = 4e-107, Method: Composition-based stats.
 Identities = 108/441 (24%), Positives = 184/441 (42%), Gaps = 71/441 (16%)

Query  213  GLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
             + FE    +     F    L+   L+  + +G E+     +     + K  D       
Sbjct  20   KIEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQS  79

Query  271  HSGNAQ------VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
             +G         +          +ALI+ P+RELA Q    +     Y++   ++    I
Sbjct  80   GTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMN---VQCHACI  136

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG    + +  L+ G  +V GTPGR+ D++    L    ++ LVLDEAD +L++G+ + I
Sbjct  137  GGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQI  196

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
              ++  +P  T      QV + SATL   ++ +++ K M  P  + +K ++   + +   
Sbjct  197  YDVYRYLPPAT------QVCLISATLP-HEILEMTNKFMTDPIRILVKRDELTLEGIKQF  249

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
             V V  +  +                                     L   Y    I   
Sbjct  250  FVAVEREEWKF----------------------------------DTLCDLYDTLTIT--  273

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
               QA+IFC TK   D L +   +           F+   +HGD    ER+  ++ F+ G
Sbjct  274  ---QAVIFCNTKRKVDWLTEKMREA---------NFTVSSMHGDMPQKERESIMKEFRSG  321

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
              R LI TDV ARG+D+  V  +IN  LP+ ++ Y+HRIGR GR  R G+AI+ V  +  
Sbjct  322  ASRVLISTDVWARGLDVSQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI  381

Query  625  KVWYHVCSSRGKGCYNTRLKE  645
            ++   +     +  Y+T++ E
Sbjct  382  RILRDI-----EQYYSTQIDE  397


 Score = 97.1 bits (240),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 29/128 (23%), Positives = 53/128 (41%), Gaps = 2/128 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F  MG+  ++ + +    +  P+ IQ  +I  I+ G DV+  +++G+GKT  F + V+Q
Sbjct  34   TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQ  93

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA-IGSDGLCCQSREV-KEWH  120
             +   +++ Q      T    G        +  Y      A IG   +    R++    H
Sbjct  94   CLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQH  153

Query  121  GCRATKGL  128
                T G 
Sbjct  154  VVAGTPGR  161


>sp|Q4R3Q1|IF4A3_MACFA Eukaryotic initiation factor 4A-III OS=Macaca 
fascicularis OX=9541 GN=EIF4A3 PE=2 SV=3
Length=411

 Score = 334 bits (857),  Expect = 1e-106, Method: Composition-based stats.
 Identities = 109/441 (25%), Positives = 185/441 (42%), Gaps = 71/441 (16%)

Query  213  GLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
             + FE    +     F    L+   L+  + +G E+     +     + K  D       
Sbjct  25   KVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQS  84

Query  271  HSGNAQVTQTKFLP------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
             +G         L          +ALI+ P+RELA Q    +     Y++   ++    I
Sbjct  85   GTGKTATFSISVLQCLDIQVRETQALILAPARELAVQIQKGLLTLGDYMN---VQCHACI  141

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG    + +  L+ G  +V GTPGR+ D++    L    ++ LVLDEAD +L++G+ + I
Sbjct  142  GGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQI  201

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
              ++  +P  T      QV++ SATL   ++ +++ K M  P  + +K ++   + +   
Sbjct  202  YDVYRYLPPAT------QVVLISATLP-HEILEMTNKFMTDPIRILVKRDELTLEGIKQF  254

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
             V V  +  +                                     L   Y    I   
Sbjct  255  FVAVEREEWKF----------------------------------DTLCDLYDTLTIT--  278

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
               QA+IFC TK   D L +   +           F+   +HGD    ER+  ++ F+ G
Sbjct  279  ---QAVIFCNTKRKVDWLTEKMREA---------NFTVSSMHGDMPQKERESIMKEFRSG  326

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
              R LI TDV ARG+D+  V  +IN  LP+ ++ Y+HRIGR GR  R G+AI+ V  +  
Sbjct  327  ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI  386

Query  625  KVWYHVCSSRGKGCYNTRLKE  645
            ++   +     +  Y+T++ E
Sbjct  387  RILRDI-----EQYYSTQIDE  402


 Score = 96.0 bits (237),  Expect = 9e-20, Method: Composition-based stats.
 Identities = 29/128 (23%), Positives = 52/128 (41%), Gaps = 2/128 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F  MG+  ++ + +    +  P+ IQ  +I  I+ G DV+  +++G+GKT  FSI V+Q
Sbjct  39   TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ  98

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA-IGSDGLCCQSREV-KEWH  120
             +   +++ Q                    +  Y      A IG   +    R++    H
Sbjct  99   CLDIQVRETQALILAPARELAVQIQKGLLTLGDYMNVQCHACIGGTNVGEDIRKLDYGQH  158

Query  121  GCRATKGL  128
                T G 
Sbjct  159  VVAGTPGR  166


>sp|Q10I26|IF43B_ORYSJ Eukaryotic initiation factor 4A-III homolog 
B OS=Oryza sativa subsp. japonica OX=39947 GN=EIF4A3B PE=1 
SV=1
Length=404

 Score = 334 bits (856),  Expect = 1e-106, Method: Composition-based stats.
 Identities = 115/443 (26%), Positives = 190/443 (43%), Gaps = 71/443 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
            D  L FE  P ++  + F    ++   L+  + +G E+     +   + +    D     
Sbjct  16   DENLTFETSPGVEVISSFDQMGIREDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQA  75

Query  269  SQHSGNAQVTQTKFLP------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
               +G   +                +ALI+ P+RELA QT   +     YI+   ++   
Sbjct  76   QSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVMLAIGDYIN---IQVHA  132

Query  323  IIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD  382
             IGG +  + +  LE+GV +V GTPGR+ D++    L    ++ L+LDEAD +L +G+ D
Sbjct  133  CIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEMLGRGFKD  192

Query  383  FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH  442
             I  ++  +P        LQV + SATL   ++ +++ K M  P  + +K ++   + + 
Sbjct  193  QIYDVYRYLP------PELQVCLISATLP-HEILEMTSKFMTDPVRILVKRDELTLEGIK  245

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
               V V  +  +                                     L   Y    I 
Sbjct  246  QFFVAVEKEEWKF----------------------------------DTLCDLYDTLTIT  271

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
                 QA+IFC TK   D L +           + + F+   +HGD    ER   +  F+
Sbjct  272  -----QAVIFCNTKRKVDWLTERM---------RSNNFTVSAMHGDMPQKERDAIMGEFR  317

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             G  R LI TDV ARG+D+  V  VIN  LP+ ++ Y+HRIGR GR  R G+AI+ V  E
Sbjct  318  SGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKKE  377

Query  623  KEKVWYHVCSSRGKGCYNTRLKE  645
              ++   +     +  Y+T++ E
Sbjct  378  DIRILRDI-----EQYYSTQIDE  395


 Score = 92.5 bits (228),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 56/141 (40%), Gaps = 2/141 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +++F +MG+  ++ + +    +  P+ IQ  ++  I+ G DV+  A++G+GKT   S+ V
Sbjct  30   ISSFDQMGIREDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSV  89

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120
             QIV   +++ Q      T      +      +  Y      A    G        K  H
Sbjct  90   CQIVDTAVREVQALILSPTRELAAQTERVMLAIGDYINIQVHAC-IGGKSIGEDIRKLEH  148

Query  121  GCRATKGLMKGKHYYEVSCHD  141
            G     G   G+    +    
Sbjct  149  GVHVVSG-TPGRVCDMIKRRT  168


>sp|Q6FLF3|DBP2_CANGA ATP-dependent RNA helicase DBP2 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP2 PE=3 SV=1
Length=544

 Score = 339 bits (868),  Expect = 1e-106, Method: Composition-based stats.
 Identities = 108/426 (25%), Positives = 177/426 (42%), Gaps = 67/426 (16%)

Query  218  IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQV  277
            +   +K +       ++                     V ++    G  +     G   +
Sbjct  121  VLKEVKAEGFDKPTSIQCQGWPMALS--------GRDMVGIAATGSGKTLSYCLPGIVHI  172

Query  278  TQTKFLP--NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
                 L   + P  L++ P+RELA Q      +F K   + ++R   + GGV    Q+  
Sbjct  173  NAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGK---SSRIRNTCVYGGVPRGQQIRE  229

Query  336  LENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
            L  G +IV+ TPGRL D++  GK NL +V +LVLDEAD +L  G+   I ++ +QI    
Sbjct  230  LIRGAEIVIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQI----  285

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG-EDSVPDTVHHVVVPVNPKTDR  454
                  Q ++ SAT    +V++L+   ++ P  V +   E +    +  +V         
Sbjct  286  --RPDRQTLMWSATWPK-EVQQLARDYLNDPIQVQIGSLELAASHNITQLV---------  333

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
                                        E+ SE  K  +    +    + K  + +IF  
Sbjct  334  ----------------------------EVVSEFEKRDRLVKHLDTASQDKESKILIFAS  365

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
            TK  CD +  Y  Q G         +  + +HGD+   ER   L  F+ G+   ++ TDV
Sbjct  366  TKRTCDEITSYLRQDG---------WPALAIHGDKDQRERDWVLNEFRTGNSPIMVATDV  416

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            AARGID+ G+ +V+N  +P   ++YVHRIGR GRA   G AIS    + + +   + S  
Sbjct  417  AARGIDVKGINFVVNYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEDNKSLGASLISIM  476

Query  635  GKGCYN  640
             +   N
Sbjct  477  REAKQN  482


 Score = 98.3 bits (243),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 43/106 (41%), Gaps = 4/106 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E G    + + V+   +  PT IQ +  P+ L G D++  A TGSGKT ++ +P 
Sbjct  109  ITTFDEAGFPDYVLKEVKAEGFDKPTSIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPG  168

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            I  +      Q     G   I    +   +  +      S F   S
Sbjct  169  IVHI----NAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGKSS  210


>sp|P41377|IF4A2_ARATH Eukaryotic initiation factor 4A-2 OS=Arabidopsis 
thaliana OX=3702 GN=TIF4A-2 PE=1 SV=1
Length=412

 Score = 334 bits (856),  Expect = 1e-106, Method: Composition-based stats.
 Identities = 115/492 (23%), Positives = 199/492 (40%), Gaps = 103/492 (21%)

Query  166  GFGGTGKKSHNKQFDNYGEEFTMH--DTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMK  223
            G    G +   +QFD    E      +    Y ++ +                       
Sbjct  3    GSAPEGTQFDTRQFDQRLNEVLDGQDEFFTSYDEVHES----------------------  40

Query  224  NQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQ-----  276
                F A  L+   L+  + +G E+     + G V   K  D  +++   SG  +     
Sbjct  41   ----FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLD--VIQQAQSGTGKTATFC  94

Query  277  ---VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQL  333
               + Q  +     +AL++ P+RELA+Q    ++    Y     ++    +GG + R+  
Sbjct  95   SGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDY---QGVKVHACVGGTSVREDQ  151

Query  334  SVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ  393
             +L+ GV +VVGTPGR+ D++    L    ++  VLDEAD +LS+G+ D I  +   +P 
Sbjct  152  RILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLP-  210

Query  394  VTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTD  453
                  ++QV V SAT+   +  +++ K M  P  + +K ++   + +    V V  +  
Sbjct  211  -----PKIQVGVFSATMPP-EALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDW  264

Query  454  RLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFC  513
            +L                                       E      +   + Q++IF 
Sbjct  265  KL---------------------------------------ETLCDLYETLAITQSVIFV  285

Query  514  RTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTD  573
             T+   D L             +    +    HGD   + R   +  F+ G  R LI TD
Sbjct  286  NTRRKVDWLTDKM---------RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD  336

Query  574  VAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
            + ARGID+  V  VIN  LP + +NY+HRIGR GR  R G+AI+ V  + +++ + +   
Sbjct  337  LLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDQRMLFDI---  393

Query  634  RGKGCYNTRLKE  645
              +  YN  ++E
Sbjct  394  --QKFYNVVVEE  403


 Score = 80.6 bits (197),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 20/70 (29%), Positives = 33/70 (47%), Gaps = 0/70 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F  MG+   + + +    +  P+ IQ   I     G DV+  A++G+GKT  F   V+Q
Sbjct  40   SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQ  99

Query  63   IVYETLKDQQ  72
             +   L   Q
Sbjct  100  QLDYALLQCQ  109


>sp|Q6C347|FAL1_YARLI ATP-dependent RNA helicase FAL1 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=FAL1 PE=3 
SV=1
Length=397

 Score = 334 bits (855),  Expect = 2e-106, Method: Composition-based stats.
 Identities = 115/448 (26%), Positives = 183/448 (41%), Gaps = 71/448 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
            D  L F+    +     F +  LK+  L+  + +G E            + K  D     
Sbjct  9    DDELEFKTSKDVDVTPTFESMDLKDDLLRGIYAYGFEAPSAIQSRAITQIIKGRDTIAQA  68

Query  269  SQHSGN------AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
               +G       + +          +A+++ P+RELA Q  + I     Y++   ++   
Sbjct  69   QSGTGKTATFSISMLEVIDTKHRETQAMVLSPTRELATQIQSVILALGDYMN---VQCHA  125

Query  323  IIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD  382
             IGG +    +  LE G  +V GTPGR  D++  G L    ++ L+LDEAD LL++G+ +
Sbjct  126  CIGGTSLSVDMKKLEAGQQVVSGTPGRCLDMIKKGCLRTKNLKMLILDEADELLNKGFQE  185

Query  383  FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH  442
             I  ++  +P  T      QV+V SATL    V +++ K M  P  + +K ++   + + 
Sbjct  186  QIYDIYRYLPAAT------QVVVVSATLP-HSVLEMTSKFMTDPVRILVKRDELTLEGLK  238

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
               + V  +  +                                     L   Y    I 
Sbjct  239  QYFIAVEQEEWKF----------------------------------DTLCDLYDTLTIT  264

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
                 QA+IFC TK   D L Q           K + F+   +HGD    +R   +  F+
Sbjct  265  -----QAVIFCNTKKKVDWLTQQM---------KDNNFTVCSMHGDMAQKDRDSIMNEFR  310

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             G  R LI TDV ARGID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+    +
Sbjct  311  SGRSRVLISTDVWARGIDVQQVSLVINYDLPPNRENYIHRIGRSGRFGRKGVAINFATND  370

Query  623  KEKVWYHVCSSRGKGCYNTRLKEDGGCT  650
                   +     +  Y+T++ E     
Sbjct  371  DITTLRDI-----EQYYSTQIDEMPVNV  393


 Score = 95.2 bits (235),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 24/117 (21%), Positives = 50/117 (43%), Gaps = 1/117 (1%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F  M +  ++ + +    +  P+ IQ+ +I  I+ G D +  A++G+GKT  FSI +++
Sbjct  25   TFESMDLKDDLLRGIYAYGFEAPSAIQSRAITQIIKGRDTIAQAQSGTGKTATFSISMLE  84

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA-IGSDGLCCQSREVKE  118
            ++    ++ Q      T             +  Y      A IG   L    ++++ 
Sbjct  85   VIDTKHRETQAMVLSPTRELATQIQSVILALGDYMNVQCHACIGGTSLSVDMKKLEA  141


>sp|Q5U526|I4A3A_XENLA Eukaryotic initiation factor 4A-III-A OS=Xenopus 
laevis OX=8355 GN=eif4a3-a PE=2 SV=1
Length=415

 Score = 334 bits (855),  Expect = 2e-106, Method: Composition-based stats.
 Identities = 107/441 (24%), Positives = 183/441 (41%), Gaps = 71/441 (16%)

Query  213  GLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
             + FE    +     F    L+   L+  + +G E+     +     + K  D       
Sbjct  29   KVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQS  88

Query  271  HSGNAQ------VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
             +G         +          +ALI+ P+RELA Q    +     Y++   ++    I
Sbjct  89   GTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMN---VQCHACI  145

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG    + +  L+ G  +V GTPGR+ D++    L    ++ LVLDEAD +L++G+ + I
Sbjct  146  GGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQI  205

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
              ++  +P  T      QV + SATL   ++ +++ K M  P  + +K ++   + +   
Sbjct  206  YDVYRYLPPAT------QVCLISATLP-HEILEMTNKFMTDPIRILVKRDELTLEGIKQF  258

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
             V V  +  +                                     L   Y    I   
Sbjct  259  FVAVEREEWKF----------------------------------DTLCDLYDTLTIT--  282

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
               QA+IFC TK   D L +   +           F+   +HGD    ER+  ++ F+ G
Sbjct  283  ---QAVIFCNTKRKVDWLTEKMREA---------NFTVSSMHGDMPQKERESIMKEFRSG  330

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
              R LI TDV ARG+D+  V  +IN  LP+ ++ Y+HRIGR GR    G+AI+ V  +  
Sbjct  331  ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGGKGVAINFVKNDDI  390

Query  625  KVWYHVCSSRGKGCYNTRLKE  645
            ++   +     +  Y+T++ E
Sbjct  391  RILRDI-----EQYYSTQIDE  406


 Score = 97.1 bits (240),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 29/128 (23%), Positives = 53/128 (41%), Gaps = 2/128 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F  MG+  ++ + +    +  P+ IQ  +I  I+ G DV+  +++G+GKT  F + V+Q
Sbjct  43   TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQ  102

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA-IGSDGLCCQSREV-KEWH  120
             +   +++ Q      T    G        +  Y      A IG   +    R++    H
Sbjct  103  CLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQH  162

Query  121  GCRATKGL  128
                T G 
Sbjct  163  VVAGTPGR  170


>sp|O42226|I4A3B_XENLA Eukaryotic initiation factor 4A-III-B OS=Xenopus 
laevis OX=8355 GN=eif4a3-b PE=2 SV=1
Length=414

 Score = 334 bits (855),  Expect = 3e-106, Method: Composition-based stats.
 Identities = 106/440 (24%), Positives = 184/440 (42%), Gaps = 71/440 (16%)

Query  214  LAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQH  271
            + F+    +     F    L+   L+  + +G E+     +     + K  D        
Sbjct  29   VEFQTSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQKAIKQIIKGRDVIAQSQSG  88

Query  272  SGNAQ------VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
            +G         +          +ALI+ P++ELA Q    +     Y++   ++    IG
Sbjct  89   TGKTATFCVSVLQCLDIQIRETQALILAPTKELARQIQKVLLALGDYMN---VQCHACIG  145

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            G    + +  L+ G  +V GTPGR+ D++    L    ++ LVLDEAD +L++G+ + I 
Sbjct  146  GTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIY  205

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
             ++  +P  T      QV + SATL   ++ +++ K M  P  + +K ++   + +    
Sbjct  206  DVYRYLPPAT------QVCLISATLP-HEILEMTNKFMTDPIRILVKRDELTLEGIKQFF  258

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
            V V  +  +                                     L   Y    I    
Sbjct  259  VAVEREEWKF----------------------------------DTLCDLYDTLTIT---  281

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
              QA+IFC TK   D L +   +           F+   +HGD    ER+  ++ F+ G 
Sbjct  282  --QAVIFCNTKRKVDWLTEKMREA---------NFTVSSMHGDMPQKERESIMKEFRSGA  330

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
             R LI TDV ARG+D+  V  +IN  LP+ ++ Y+HRIGR GR  R G+AI+ V  +  +
Sbjct  331  SRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIR  390

Query  626  VWYHVCSSRGKGCYNTRLKE  645
            +   +     +  Y+T++ E
Sbjct  391  ILRDI-----EQYYSTQIDE  405


 Score = 95.2 bits (235),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 28/128 (22%), Positives = 53/128 (41%), Gaps = 2/128 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F  MG+  ++ + +    +  P+ IQ ++I  I+ G DV+  +++G+GKT  F + V+Q
Sbjct  42   TFDTMGLREDLLRGIYAYGFEKPSAIQQKAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQ  101

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA-IGSDGLCCQSREV-KEWH  120
             +   +++ Q      T             +  Y      A IG   +    R++    H
Sbjct  102  CLDIQIRETQALILAPTKELARQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQH  161

Query  121  GCRATKGL  128
                T G 
Sbjct  162  VVAGTPGR  169


>sp|Q5VNM3|IF43A_ORYSJ Eukaryotic initiation factor 4A-III homolog 
A OS=Oryza sativa subsp. japonica OX=39947 GN=EIF4A3A PE=1 
SV=1
Length=404

 Score = 333 bits (853),  Expect = 3e-106, Method: Composition-based stats.
 Identities = 114/443 (26%), Positives = 191/443 (43%), Gaps = 71/443 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
            D  L FE  P ++  + F    +++  L+  + +G E+     +   + +    D     
Sbjct  16   DENLTFETSPGVEVISSFDQMGIRDDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQA  75

Query  269  SQHSGNAQVTQTKFLP------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
               +G   +                +ALI+ P+RELA QT   +     +I+   ++   
Sbjct  76   QSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVMLAIGDFIN---IQVHA  132

Query  323  IIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD  382
             IGG +  + +  LE+GV +V GTPGR+ D++    L    ++ L+LDEAD +L +G+ D
Sbjct  133  CIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEMLGRGFKD  192

Query  383  FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH  442
             I  ++  +P        LQV + SATL   ++ +++ K M  P  + +K ++   + + 
Sbjct  193  QIYDVYRYLP------PELQVCLISATLP-HEILEMTSKFMTDPVRILVKRDELTLEGIK  245

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
               V V  +  +                                     L   Y    I 
Sbjct  246  QFFVAVEKEEWKF----------------------------------DTLCDLYDTLTIT  271

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
                 QA+IFC TK   D L +           + + F+   +HGD    ER   +  F+
Sbjct  272  -----QAVIFCNTKRKVDWLTERM---------RSNNFTVSAMHGDMPQKERDAIMGEFR  317

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             G  R LI TDV ARG+D+  V  VIN  LP+ ++ Y+HRIGR GR  R G+AI+ V  E
Sbjct  318  SGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKKE  377

Query  623  KEKVWYHVCSSRGKGCYNTRLKE  645
              ++   +     +  Y+T++ E
Sbjct  378  DIRILRDI-----EQYYSTQIDE  395


 Score = 91.0 bits (224),  Expect = 4e-18, Method: Composition-based stats.
 Identities = 29/141 (21%), Positives = 56/141 (40%), Gaps = 2/141 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +++F +MG+  ++ + +    +  P+ IQ  ++  I+ G DV+  A++G+GKT   S+ V
Sbjct  30   ISSFDQMGIRDDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSV  89

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120
             QIV   +++ Q      T      +      +  +      A    G        K  H
Sbjct  90   CQIVDTAVREVQALILSPTRELAAQTERVMLAIGDFINIQVHAC-IGGKSIGEDIRKLEH  148

Query  121  GCRATKGLMKGKHYYEVSCHD  141
            G     G   G+    +    
Sbjct  149  GVHVVSG-TPGRVCDMIKRRT  168


>sp|A5DIP0|DHH1_PICGU ATP-dependent RNA helicase DHH1 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DHH1 PE=3 
SV=1
Length=547

 Score = 337 bits (865),  Expect = 4e-106, Method: Composition-based stats.
 Identities = 123/520 (24%), Positives = 202/520 (39%), Gaps = 95/520 (18%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K+ ++ GL  E+   +          ++   +               G   L++A +G  
Sbjct  29   KSFEEFGLKRELLMGIFEAGFEKPSPIQEESIPMAL----------AGRDILARAKNG-T  77

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             K+       + Q K   N  + LI+ P+RELA QT   +K   K++   KL+ ++  GG
Sbjct  78   GKTASFIIPALQQVKTKLNKIQVLILVPTRELALQTSQVVKTLGKHL---KLQCMVTTGG  134

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
               RD +  L+  V I+VGTPGR+ DL +    + S+    V+DEAD +LS+ +   I +
Sbjct  135  TLLRDDVMRLDEPVHILVGTPGRVLDLAARSIADFSECPMFVMDEADKMLSREFKGIIEQ  194

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVV  446
            +    P      K  Q ++ SAT     VK   +K ++ P  ++L  ++     +     
Sbjct  195  ILEFFP------KNRQSLLFSATFP-LAVKSFMDKHLNKPYEINLM-DELTLRGISQFYA  246

Query  447  PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM  506
             V  K                                         K         + K+
Sbjct  247  FVEEKQ----------------------------------------KLHCLNTLFSKLKI  266

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
            +QAIIFC +    + L +   + G         +SC   H       R +    F++G V
Sbjct  267  NQAIIFCNSTNRVELLAKKITELG---------YSCYYSHAKMPQQARNKVFHEFRQGSV  317

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
            R L+C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR   +GLAI+ +  +  K 
Sbjct  318  RTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINFIHWDDRKS  377

Query  627  WYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDG  686
             +++ +  G                      + S+I+  L  T  +        +DE   
Sbjct  378  LFNIETELGT-----------------EIKPIPSDIDRSLYVTEDEASIPRPFKIDELPK  420

Query  687  KVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKEAQTSF  726
               + +KR   G  Y+G      PT Q       +A T +
Sbjct  421  GNEHSRKR--NGYEYRGQ-----PTSQGFPQQPPQANTGY  453


 Score = 101 bits (252),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 9/93 (10%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +F E G+  E+   + E  +  P+ IQ ESIP+ L G D+L  A+ G+GKT +F IP +
Sbjct  29   KSFEEFGLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPAL  88

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
            Q V   L   Q                 +  + 
Sbjct  89   QQVKTKLNKIQV---------LILVPTRELALQ  112


>sp|O02494|IF4A_CRYPV Eukaryotic initiation factor 4A OS=Cryptosporidium 
parvum OX=5807 GN=EIF4-A PE=2 SV=1
Length=405

 Score = 332 bits (852),  Expect = 6e-106, Method: Composition-based stats.
 Identities = 110/426 (26%), Positives = 191/426 (45%), Gaps = 71/426 (17%)

Query  228  FPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN------AQVTQ  279
            F A  L+   L+  F +G E+     + G   +    D        +G       A + +
Sbjct  33   FEALNLEGDLLRGIFAYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQK  92

Query  280  TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
              +  NA + L++ P+RELA+Q          Y +   LR    +GG + RD ++ L++G
Sbjct  93   IDYSLNACQVLLLAPTRELAQQIQKVALALGDYCE---LRCHACVGGTSVRDDMNKLKSG  149

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
            V +VVGTPGR+ D++  G L +  ++  +LDEAD +LS+G+   I+ +  ++PQ      
Sbjct  150  VHMVVGTPGRVFDMLDKGYLRVDNLKLFILDEADEMLSRGFKVQIHDIFKKLPQ------  203

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
             +QV + SAT+ + ++  L+ + M  P  + +K E+   + +    V V     ++    
Sbjct  204  DVQVALFSATMPN-EILHLTTQFMRDPKRILVKQEELTLEGIRQFYVGVEKDEWKM----  258

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
                                               +  +   +   + QAII+C T+   
Sbjct  259  -----------------------------------DTLIDLYETLTIVQAIIYCNTRRRV  283

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            D L +   ++          F+C  +HGD    +R+  + +F+ G  R LI TD+ ARGI
Sbjct  284  DQLTKQMRER---------DFTCSSMHGDMDQKDREVIMRQFRSGSSRVLITTDLLARGI  334

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCY  639
            D+  V  VIN  LP   + Y+HRIGR GR  + G++I+ V  +       +        Y
Sbjct  335  DVQQVSLVINYDLPVSPETYIHRIGRSGRFGKKGVSINFVTDDDIVCLRDIERH-----Y  389

Query  640  NTRLKE  645
            NT+++E
Sbjct  390  NTQIEE  395


 Score = 90.2 bits (222),  Expect = 6e-18, Method: Composition-based stats.
 Identities = 58/376 (15%), Positives = 114/376 (30%), Gaps = 70/376 (19%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F  + +  ++ + +    +  P+ IQ   I  IL G D +  A++G+GKT  F I  
Sbjct  30   VECFEALNLEGDLLRGIFAYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAA  89

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA-IGSDGLCCQSREVKE-  118
            +Q +  +L   Q      T             +  Y      A +G   +     ++K  
Sbjct  90   LQKIDYSLNACQVLLLAPTRELAQQIQKVALALGDYCELRCHACVGGTSVRDDMNKLKSG  149

Query  119  WHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQ  178
             H    T G +           D+G  RV        L +  +       G   + H+  
Sbjct  150  VHMVVGTPGRV-------FDMLDKGYLRV----DNLKLFILDEADEMLSRGFKVQIHDI-  197

Query  179  FDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAE-  237
                                                 F+  P     ALF A +      
Sbjct  198  -------------------------------------FKKLPQDVQVALFSATMPNEILH  220

Query  238  LKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN-AQVTQTKFLPNAPKALIVEPSR  296
            L   F  +  +   K   + L      Y+   +       +          +A+I   +R
Sbjct  221  LTTQFMRDPKRILVKQEELTLEGIRQFYVGVEKDEWKMDTLIDLYETLTIVQAIIYCNTR  280

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGTPGRLDD  352
                     + Q  K +         + G +  +D+  ++         +++ T     D
Sbjct  281  -------RRVDQLTKQMRERDFTCSSMHGDMDQKDREVIMRQFRSGSSRVLITT-----D  328

Query  353  LVSTGKLNLSQVRFLV  368
            L++ G +++ QV  ++
Sbjct  329  LLARG-IDVQQVSLVI  343


>sp|Q12099|FAL1_YEAST ATP-dependent RNA helicase FAL1 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=FAL1 
PE=1 SV=1
Length=399

 Score = 330 bits (847),  Expect = 2e-105, Method: Composition-based stats.
 Identities = 121/442 (27%), Positives = 189/442 (43%), Gaps = 72/442 (16%)

Query  203  VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAP  262
            + F +  +D  L F+    +K  + F +  LK+  L+  +    F+ P      A+++  
Sbjct  1    MSFDRE-EDQKLKFKTSKKLKVSSTFESMNLKDDLLRGIYSY-GFEAPSSIQSRAITQII  58

Query  263  DGY-IVKSQHSGNAQ--------VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI  313
             G  ++    SG  +        +          +ALI+ P+RELA Q    +K    Y+
Sbjct  59   SGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYM  118

Query  314  DNPKLRELLIIGGVAARDQLSVLEN-GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
            +   +    I GG   +D L  ++  G   V GTPGR+ D++    L    V+ LVLDEA
Sbjct  119  N---VNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEA  175

Query  373  DGLLS--QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVD  430
            D LLS   G+   I  +  ++P      K  QV+V SAT++  D+ +++ K M+ P  + 
Sbjct  176  DELLSETLGFKQQIYDIFAKLP------KNCQVVVVSATMNK-DILEVTRKFMNDPVKIL  228

Query  431  LKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIK  490
            +K ++   + +   VV V+ +                                       
Sbjct  229  VKRDEISLEGIKQYVVNVDKEE--------------------------------------  250

Query  491  ILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRK  550
              K +          + Q +IFC TK   D L Q  IQ           F+ V +HGD K
Sbjct  251  -WKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQ---------SNFAVVSMHGDMK  300

Query  551  PHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAE  610
              ER + +  F+ G  R LI TDV ARGID+  V  VIN  LP+  +NY+HRIGR GR  
Sbjct  301  QEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFG  360

Query  611  RMGLAISLVATEKEKVWYHVCS  632
            R G+AI+ +          +  
Sbjct  361  RKGVAINFITKADLAKLREIEK  382


 Score = 111 bits (278),  Expect = 5e-25, Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 0/126 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F  M +  ++ + +    +  P+ IQ+ +I  I+ G DV+  A++G+GKT  F+I ++
Sbjct  23   STFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLL  82

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHG  121
            Q +    KD Q      T             +  Y   +AFAI          +  + HG
Sbjct  83   QAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHG  142

Query  122  CRATKG  127
            C+A  G
Sbjct  143  CQAVSG  148


>sp|A6ZXY5|FAL1_YEAS7 ATP-dependent RNA helicase FAL1 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=FAL1 PE=3 SV=1
Length=399

 Score = 330 bits (847),  Expect = 2e-105, Method: Composition-based stats.
 Identities = 121/442 (27%), Positives = 189/442 (43%), Gaps = 72/442 (16%)

Query  203  VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAP  262
            + F +  +D  L F+    +K  + F +  LK+  L+  +    F+ P      A+++  
Sbjct  1    MSFDRE-EDQKLKFKTSKKLKVSSTFESMNLKDDLLRGIYSY-GFEAPSSIQSRAITQII  58

Query  263  DGY-IVKSQHSGNAQ--------VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI  313
             G  ++    SG  +        +          +ALI+ P+RELA Q    +K    Y+
Sbjct  59   SGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYM  118

Query  314  DNPKLRELLIIGGVAARDQLSVLEN-GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
            +   +    I GG   +D L  ++  G   V GTPGR+ D++    L    V+ LVLDEA
Sbjct  119  N---VNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEA  175

Query  373  DGLLS--QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVD  430
            D LLS   G+   I  +  ++P      K  QV+V SAT++  D+ +++ K M+ P  + 
Sbjct  176  DELLSETLGFKQQIYDIFAKLP------KNCQVVVVSATMNK-DILEVTRKFMNDPVKIL  228

Query  431  LKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIK  490
            +K ++   + +   VV V+ +                                       
Sbjct  229  VKRDEISLEGIKQYVVNVDKEE--------------------------------------  250

Query  491  ILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRK  550
              K +          + Q +IFC TK   D L Q  IQ           F+ V +HGD K
Sbjct  251  -WKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQ---------SNFAVVSMHGDMK  300

Query  551  PHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAE  610
              ER + +  F+ G  R LI TDV ARGID+  V  VIN  LP+  +NY+HRIGR GR  
Sbjct  301  QEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFG  360

Query  611  RMGLAISLVATEKEKVWYHVCS  632
            R G+AI+ +          +  
Sbjct  361  RKGVAINFITKADLAKLREIEK  382


 Score = 111 bits (278),  Expect = 5e-25, Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 0/126 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F  M +  ++ + +    +  P+ IQ+ +I  I+ G DV+  A++G+GKT  F+I ++
Sbjct  23   STFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLL  82

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHG  121
            Q +    KD Q      T             +  Y   +AFAI          +  + HG
Sbjct  83   QAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHG  142

Query  122  CRATKG  127
            C+A  G
Sbjct  143  CQAVSG  148


>sp|Q6CIV2|DBP2_KLULA ATP-dependent RNA helicase DBP2 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP2 PE=3 SV=1
Length=554

 Score = 335 bits (860),  Expect = 3e-105, Method: Composition-based stats.
 Identities = 107/422 (25%), Positives = 176/422 (42%), Gaps = 67/422 (16%)

Query  218  IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQV  277
            +   +K +       ++                     + ++    G  +     G   +
Sbjct  124  VLDEVKQEGFAKPTGIQCQGWPMALS--------GRDMIGVAATGSGKTLSYCLPGIVHI  175

Query  278  TQTKFLP--NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
                 L   + P  L++ P+RELA Q      +F     + ++R   + GGV    Q+  
Sbjct  176  NAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGA---SSRIRNTCVYGGVPKSQQIRD  232

Query  336  LENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
            L+ GV+I++ TPGRL D++  GK NL +V +LVLDEAD +L  G+   I ++ +QI    
Sbjct  233  LQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQI----  288

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG-EDSVPDTVHHVVVPVNPKTDR  454
                  Q ++ SAT    +VK+L+   +H P  V +   E S   T+  +V         
Sbjct  289  --RPDRQTLMWSATWPK-EVKQLASDYLHDPIQVQIGSLELSASHTITQIV---------  336

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
                                        E+ ++  K  +    +    + +  + IIF  
Sbjct  337  ----------------------------EVLTDFEKRDRLAKHLETASQDQDSKIIIFAS  368

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
            TK  CD +  Y   +G         +  + +HGD+  +ER   L  F+ G    ++ TDV
Sbjct  369  TKRTCDEITSYLRTEG---------WPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDV  419

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            AARGID+ G+ YVIN  +P   ++YVHRIGR GRA   G AIS      + +   +    
Sbjct  420  AARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGSTGTAISFFTEGNKSLGAALIKIM  479

Query  635  GK  636
             +
Sbjct  480  RE  481


 Score = 96.0 bits (237),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 44/106 (42%), Gaps = 4/106 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F E G    +   V++  +  PT IQ +  P+ L G D++  A TGSGKT ++ +P 
Sbjct  112  IRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPG  171

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            I  +      Q     G   I    +   +  +      S F   S
Sbjct  172  IVHI----NAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASS  213


>sp|Q6CX73|FAL1_KLULA ATP-dependent RNA helicase FAL1 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=FAL1 PE=3 SV=1
Length=398

 Score = 330 bits (846),  Expect = 3e-105, Method: Composition-based stats.
 Identities = 118/450 (26%), Positives = 189/450 (42%), Gaps = 71/450 (16%)

Query  203  VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAP  262
            + F+++  D  L F+    +K  A F +  LK   L+  +    F++P      A+S+  
Sbjct  1    MSFNRD-DDSKLKFKTSKKLKVSATFESMNLKPDLLRGIY-FYGFEYPSSIQSRAISQII  58

Query  263  DGY-IVKSQHSGNAQ--------VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI  313
             G  ++    SG  +        +          +AL++ P+RELA Q+ + I     Y+
Sbjct  59   SGKDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQALVLSPTRELASQSESVISNLGDYL  118

Query  314  DNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEAD  373
            +   +      GG A +  +  +     +V GTPGR+ D++    LN+   + LVLDEAD
Sbjct  119  N---VTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEAD  175

Query  374  GLLS--QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL  431
             LL    G+   I  +  ++P        +QV+V SAT+ S D+ ++++K M  P  + +
Sbjct  176  ELLGETLGFKQQIYDIFTKLP------PTIQVVVVSATM-SKDILEITKKFMSDPVKILV  228

Query  432  KGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
            K ++   D +    V V  +                                        
Sbjct  229  KRDEISLDVIKQYYVDVEKEE---------------------------------------  249

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
             K +          + Q +IFC T+   D L +   Q           FS   +HGD K 
Sbjct  250  WKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQ---------TNFSVSSMHGDMKQ  300

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
             ER Q +  F+ G  R LI TDV ARGID+  +  VIN  +PD  +NY+HRIGR GR  R
Sbjct  301  EERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGR  360

Query  612  MGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
             G+AI+ +  E+      + S        T
Sbjct  361  KGVAINFITKEERPKLKEIESHYRIKIKPT  390


 Score = 96.7 bits (239),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 2/129 (2%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            A F  M + P++ + +    +  P+ IQ+ +I  I+ G DV+  A++G+GKT  F+I ++
Sbjct  23   ATFESMNLKPDLLRGIYFYGFEYPSSIQSRAISQIISGKDVIAQAQSGTGKTATFTIGLL  82

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREV--KEW  119
            Q +    K+ Q      T      S      +  Y   +A A        Q  +   K  
Sbjct  83   QAIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNC  142

Query  120  HGCRATKGL  128
                 T G 
Sbjct  143  QVVSGTPGR  151


>sp|A6ZRX0|DBP2_YEAS7 ATP-dependent RNA helicase DBP2 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DBP2 PE=3 SV=1
Length=546

 Score = 334 bits (857),  Expect = 6e-105, Method: Composition-based stats.
 Identities = 108/426 (25%), Positives = 177/426 (42%), Gaps = 67/426 (16%)

Query  218  IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQV  277
            +   +K +       ++                     V ++    G  +     G   +
Sbjct  124  VLNEVKAEGFDKPTGIQCQGWPMALS--------GRDMVGIAATGSGKTLSYCLPGIVHI  175

Query  278  TQTKFLP--NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
                 L   + P  L++ P+RELA Q      +F     + ++R   + GGV    Q+  
Sbjct  176  NAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGH---SSRIRNTCVYGGVPKSQQIRD  232

Query  336  LENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
            L  G +IV+ TPGRL D++  GK NL +V +LVLDEAD +L  G+   I ++ +QI    
Sbjct  233  LSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQI----  288

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG-EDSVPDTVHHVVVPVNPKTDR  454
                  Q ++ SAT    +VK+L+   ++ P  V +   E S    +  +V         
Sbjct  289  --RPDRQTLMWSATWPK-EVKQLAADYLNDPIQVQVGSLELSASHNITQIV---------  336

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
                                        E+ S+  K  +    +    +    + +IF  
Sbjct  337  ----------------------------EVVSDFEKRDRLNKYLETASQDNEYKTLIFAS  368

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
            TK  CD++ +Y  + G         +  + +HGD+   ER   L+ F+ G    ++ TDV
Sbjct  369  TKRMCDDITKYLREDG---------WPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDV  419

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            AARGID+ G+ YVIN  +P   ++YVHRIGR GRA   G AIS    + + +   + S  
Sbjct  420  AARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLISIM  479

Query  635  GKGCYN  640
             +   N
Sbjct  480  REANQN  485


 Score = 96.4 bits (238),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 32/154 (21%), Positives = 56/154 (36%), Gaps = 11/154 (7%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E G    +   V+   +  PT IQ +  P+ L G D++  A TGSGKT ++ +P 
Sbjct  112  ITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPG  171

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF--AIGSDGLCC-----QS  113
            I  +      Q     G   I    +   +  +      S F  +      C      +S
Sbjct  172  IVHI----NAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKS  227

Query  114  REVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRV  147
            +++++            G+    +      L RV
Sbjct  228  QQIRDLSRGSEIVIATPGRLIDMLEIGKTNLKRV  261


>sp|Q55D61|IF4A_DICDI Eukaryotic initiation factor 4A OS=Dictyostelium 
discoideum OX=44689 GN=tifA PE=3 SV=1
Length=405

 Score = 329 bits (844),  Expect = 7e-105, Method: Composition-based stats.
 Identities = 118/451 (26%), Positives = 197/451 (44%), Gaps = 76/451 (17%)

Query  208  NGKDLGLAFE-----IPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSK  260
            N  + G +F+         ++ +  F +  L+   L+  FN+G E+     +   + + K
Sbjct  9    NSSNDGSSFKLNETFTSSEVEVKPTFESMGLREELLRGIFNYGFEKPSAIQQRAILPIIK  68

Query  261  APDGYIVKSQHSGNAQVTQTKFLP------NAPKALIVEPSRELAEQTLNNIKQFKKYID  314
              D        +G         L        +P+ LI+ P+RELA+Q         ++++
Sbjct  69   GRDTIAQAQSGTGKTATFSIGALQCVEVNVRSPQVLILSPTRELAQQIQKVALALSEFMN  128

Query  315  NPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADG  374
               ++    +GG    D +  LE GV IV GTPGR+ D+++   L    ++ ++LDEAD 
Sbjct  129  ---IQVHACVGGKNLSDDVKKLETGVHIVSGTPGRVLDMITRKSLPTRHIKMMILDEADE  185

Query  375  LLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE  434
            +LS G+   IN ++  +P  T      Q+++ SATL + DV  ++EK M  P  + LK +
Sbjct  186  MLSLGFQQQINDVYRYLPNGT------QIVLVSATL-TQDVVSMTEKFMTKPVRILLKRD  238

Query  435  DSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG  494
            +   D +    V V  +                                         K 
Sbjct  239  ELTLDGIKQFFVSVEKED---------------------------------------WKF  259

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
                       + QA+IFC TK   D L +           +   F+   +HGD    ER
Sbjct  260  GTLCDIYDSLTITQAVIFCNTKKKVDQLTEQM---------RDANFTVASMHGDMVQKER  310

Query  555  KQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGL  614
            ++ ++ F+ G+ R LI TD+ ARGID+  V  VIN  LP +++NY+HRIGR GR  R G+
Sbjct  311  EEIIKSFRSGENRVLITTDILARGIDVQQVSLVINYDLPIDRENYIHRIGRSGRFGRKGV  370

Query  615  AISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            AI+ V     ++   +     +  Y+T++ E
Sbjct  371  AINFVKNSDIRILRDI-----EQFYSTQIDE  396


 Score = 93.3 bits (230),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 28/128 (22%), Positives = 47/128 (37%), Gaps = 2/128 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F  MG+  E+ + +    +  P+ IQ  +I  I+ G D +  A++G+GKT  FSI  +Q
Sbjct  33   TFESMGLREELLRGIFNYGFEKPSAIQQRAILPIIKGRDTIAQAQSGTGKTATFSIGALQ  92

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKE--WH  120
             V   ++  Q      T             ++ +      A           +  E   H
Sbjct  93   CVEVNVRSPQVLILSPTRELAQQIQKVALALSEFMNIQVHACVGGKNLSDDVKKLETGVH  152

Query  121  GCRATKGL  128
                T G 
Sbjct  153  IVSGTPGR  160


>sp|P24783|DBP2_YEAST ATP-dependent RNA helicase DBP2 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP2 
PE=1 SV=1
Length=546

 Score = 334 bits (857),  Expect = 7e-105, Method: Composition-based stats.
 Identities = 108/426 (25%), Positives = 177/426 (42%), Gaps = 67/426 (16%)

Query  218  IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQV  277
            +   +K +       ++                     V ++    G  +     G   +
Sbjct  124  VLNEVKAEGFDKPTGIQCQGWPMALS--------GRDMVGIAATGSGKTLSYCLPGIVHI  175

Query  278  TQTKFLP--NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
                 L   + P  L++ P+RELA Q      +F     + ++R   + GGV    Q+  
Sbjct  176  NAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGH---SSRIRNTCVYGGVPKSQQIRD  232

Query  336  LENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
            L  G +IV+ TPGRL D++  GK NL +V +LVLDEAD +L  G+   I ++ +QI    
Sbjct  233  LSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQI----  288

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG-EDSVPDTVHHVVVPVNPKTDR  454
                  Q ++ SAT    +VK+L+   ++ P  V +   E S    +  +V         
Sbjct  289  --RPDRQTLMWSATWPK-EVKQLAADYLNDPIQVQVGSLELSASHNITQIV---------  336

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
                                        E+ S+  K  +    +    +    + +IF  
Sbjct  337  ----------------------------EVVSDFEKRDRLNKYLETASQDNEYKTLIFAS  368

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
            TK  CD++ +Y  + G         +  + +HGD+   ER   L+ F+ G    ++ TDV
Sbjct  369  TKRMCDDITKYLREDG---------WPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDV  419

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            AARGID+ G+ YVIN  +P   ++YVHRIGR GRA   G AIS    + + +   + S  
Sbjct  420  AARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLISIM  479

Query  635  GKGCYN  640
             +   N
Sbjct  480  REANQN  485


 Score = 96.4 bits (238),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 32/154 (21%), Positives = 56/154 (36%), Gaps = 11/154 (7%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E G    +   V+   +  PT IQ +  P+ L G D++  A TGSGKT ++ +P 
Sbjct  112  ITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPG  171

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF--AIGSDGLCC-----QS  113
            I  +      Q     G   I    +   +  +      S F  +      C      +S
Sbjct  172  IVHI----NAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKS  227

Query  114  REVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRV  147
            +++++            G+    +      L RV
Sbjct  228  QQIRDLSRGSEIVIATPGRLIDMLEIGKTNLKRV  261


>sp|Q755N4|DBP2_EREGS ATP-dependent RNA helicase DBP2 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DBP2 PE=3 SV=2
Length=557

 Score = 333 bits (854),  Expect = 3e-104, Method: Composition-based stats.
 Identities = 108/426 (25%), Positives = 179/426 (42%), Gaps = 67/426 (16%)

Query  218  IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQV  277
            +   +K +       ++                     + ++    G  +     G   +
Sbjct  125  VLKEVKEEGFEKPTAIQCQGWPMALS--------GRDMIGVAATGSGKTLSYCLPGIVHI  176

Query  278  TQTKFLP--NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
                 L   + P  L++ P+RELA Q      +F +   + ++R   + GGV    Q+  
Sbjct  177  NAQPLLSPGDGPVVLVLAPTRELAVQIQKECSKFGR---SSRIRNTCVYGGVPKSQQIRD  233

Query  336  LENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
            L+ GV+I++ TPGRL D++  GK NL +V +LVLDEAD +L  G+   I ++ +QI    
Sbjct  234  LQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQI----  289

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG-EDSVPDTVHHVVVPVNPKTDR  454
                  Q ++ SAT    +V++L+   +H P  V++   E +   T+  +V         
Sbjct  290  --RPDRQTLMWSATWPK-EVQQLARDYLHDPIQVNIGSLELAASHTITQLV---------  337

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
                                        E+ S+  K  +    +    + K  + IIF  
Sbjct  338  ----------------------------EVVSDFDKRDRLVKHLEIASKDKDSKIIIFAS  369

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
            TK  CD +  Y  Q G         +  + +HGD++  ER   L  F+ G    ++ TDV
Sbjct  370  TKRTCDEITSYLRQDG---------WPALAIHGDKQQQERDWVLNEFRTGRSPIMVATDV  420

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            AARGID+ G+ +VIN  +P   ++YVHRIGR GRA   G AIS      + +   + S  
Sbjct  421  AARGIDVKGINFVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEANKTLGAQLISIM  480

Query  635  GKGCYN  640
             +    
Sbjct  481  REAKQE  486


 Score = 98.3 bits (243),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 44/106 (42%), Gaps = 4/106 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E G    + + V+E  +  PT IQ +  P+ L G D++  A TGSGKT ++ +P 
Sbjct  113  IRTFDEAGFPEYVLKEVKEEGFEKPTAIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPG  172

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            I  +      Q     G   +    +   +  +      S F   S
Sbjct  173  IVHI----NAQPLLSPGDGPVVLVLAPTRELAVQIQKECSKFGRSS  214


>sp|Q94A52|RH2_ARATH Eukaryotic initiation factor 4A-III homolog 
OS=Arabidopsis thaliana OX=3702 GN=EIF4A3 PE=1 SV=2
Length=408

 Score = 328 bits (840),  Expect = 4e-104, Method: Composition-based stats.
 Identities = 117/443 (26%), Positives = 192/443 (43%), Gaps = 71/443 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
            D  L FE    ++    F    +K   L+  + +G E+     +   + + +  D     
Sbjct  20   DDKLVFETTDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQA  79

Query  269  SQHSGNAQVTQTKFLP------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
               +G   +                +ALI+ P+RELA QT   I+    + +   ++   
Sbjct  80   QSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGLHAN---IQAHA  136

Query  323  IIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD  382
             IGG +  + +  LE+GV +V GTPGR+ D++    L    ++ L+LDE+D +LS+G+ D
Sbjct  137  CIGGNSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKD  196

Query  383  FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH  442
             I  ++  +P        LQV + SATL   ++ +++ K M  P  + +K ++   + + 
Sbjct  197  QIYDVYRYLP------PDLQVCLVSATLP-HEILEMTSKFMTEPVKILVKRDELTLEGIK  249

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
               V V  +  +                                     L   Y    I 
Sbjct  250  QFFVAVEKEEWKF----------------------------------DTLCDLYDTLTIT  275

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
                 QA+IFC TK   D L +           + H F+   +HGD    ER   +  F+
Sbjct  276  -----QAVIFCNTKRKVDYLSEKM---------RSHNFTVSSMHGDMPQKERDAIMNEFR  321

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             GD R LI TDV ARGID+  V  VIN  LP+ ++ Y+HRIGR GR  R G+AI+ V ++
Sbjct  322  SGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSD  381

Query  623  KEKVWYHVCSSRGKGCYNTRLKE  645
              K+   +     +  Y+T++ E
Sbjct  382  DIKILRDI-----EQYYSTQIDE  399


 Score = 97.1 bits (240),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 2/138 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F++MG+  ++ + V E  +  P+ IQ  ++  IL G DV+  A++G+GKT   ++ V
Sbjct  34   ITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSV  93

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120
             Q+V  + ++ Q      T      +      +  +    A A    G        K  H
Sbjct  94   CQVVDTSSREVQALILSPTRELATQTEKTIQAIGLHANIQAHAC-IGGNSVGEDIRKLEH  152

Query  121  GCRATKGLMKGKHYYEVS  138
            G     G   G+    + 
Sbjct  153  GVHVVSG-TPGRVCDMIK  169


>sp|Q5B0J9|DBP2_EMENI ATP-dependent RNA helicase dbp2 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=dbp2 PE=3 SV=1
Length=563

 Score = 332 bits (852),  Expect = 6e-104, Method: Composition-based stats.
 Identities = 110/433 (25%), Positives = 184/433 (42%), Gaps = 69/433 (16%)

Query  218  IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQV  277
            +   +K Q       +++                    V +++   G  +         +
Sbjct  151  VLSEVKAQGFEKPTAIQSQGWPMALS--------GRDVVGIAETGSGKTLSYCLPAIVHI  202

Query  278  TQTKFLP--NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
                 L   + P  LI+ P+RELA Q    I +F K   + ++R   + GGV    Q+  
Sbjct  203  NAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGK---SSRIRNTCVYGGVPKGPQIRD  259

Query  336  LENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
            L  GV++ + TPGRL D++  G+ NL +V +LVLDEAD +L  G+   I ++ +QI    
Sbjct  260  LSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQI----  315

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED-SVPDTVHHVVVPVNPKTDR  454
                  Q  + SAT    +V++L+   ++    V++   D S    +  +V         
Sbjct  316  --RPDRQTCMWSATWPK-EVRQLASDFLNNYIQVNIGSMDLSANHRITQIV---------  363

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
                                        E+ SE  K  +    +  I E++ ++ ++F  
Sbjct  364  ----------------------------EVISEFEKRDRMIKHLEKIMENRGNKCLVFTG  395

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
            TK   D + ++  Q G         +  + +HGD++  ER   L  FK G    ++ TDV
Sbjct  396  TKRIADEITRFLRQDG---------WPALSIHGDKQQQERDWVLNEFKTGKSPIMVATDV  446

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS--  632
            A+RGID+  + +VIN   P+  ++YVHRIGR GRA   G AI+   T+  K    + +  
Sbjct  447  ASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNAKQARDLVTIL  506

Query  633  SRGKGCYNTRLKE  645
            S  K   + RL E
Sbjct  507  SEAKQQIDPRLAE  519


 Score = 103 bits (256),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 44/106 (42%), Gaps = 4/106 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E G    +   V+   +  PT IQ++  P+ L G DV+  AETGSGKT ++ +P 
Sbjct  139  VETFDEAGFPQYVLSEVKAQGFEKPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPA  198

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            I  +      Q     G   I    +   +  +      S F   S
Sbjct  199  IVHI----NAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSS  240


>sp|Q6BY27|DBP2_DEBHA ATP-dependent RNA helicase DBP2 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP2 PE=3 SV=1
Length=536

 Score = 331 bits (849),  Expect = 7e-104, Method: Composition-based stats.
 Identities = 111/424 (26%), Positives = 176/424 (42%), Gaps = 71/424 (17%)

Query  218  IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDG----YIVKSQHSG  273
            +   +K Q       ++                     V ++    G    Y + S    
Sbjct  116  VLKEVKQQGFPKPTSIQCQGWPMALS--------GRDMVGIASTGSGKTLSYCLPSIVHI  167

Query  274  NAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQL  333
            NAQ   +    + P  L++ P+RELA Q         K+  + ++R   + GG     Q+
Sbjct  168  NAQPLLSPG--DGPIVLVLAPTRELAVQIQQEC---SKFGSSSRIRNTCVYGGAPKGQQI  222

Query  334  SVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ  393
              L  GV+I + TPGRL D++ TGK NL +V +LVLDEAD +L  G+   I ++ +QI  
Sbjct  223  RDLARGVEICIATPGRLIDMLETGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQI--  280

Query  394  VTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG-EDSVPDTVHHVVVPVNPKT  452
                    Q ++ SAT    +V+ L+   ++ P  V +   E +   T+  +V       
Sbjct  281  ----RPDRQTLMWSATWPK-EVQALTRDYLNDPIQVTVGSLELAASHTITQLV-------  328

Query  453  DRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF  512
                                          E+ +E  K  +    +         + +IF
Sbjct  329  ------------------------------EVVTEFEKRDRLIKHLETATADPEAKCLIF  358

Query  513  CRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICT  572
              TK  CD +  Y    G         +  + +HGD++  ER   L+ FK G    ++ T
Sbjct  359  ASTKRTCDEITNYLRADG---------WPALAIHGDKQQGERDWVLKEFKTGKSPIMVAT  409

Query  573  DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
            DVAARGID+ G+ YVIN+ +P   ++YVHRIGR GRA   G A+S       K+   +C 
Sbjct  410  DVAARGIDVKGISYVINLDMPGNIEDYVHRIGRTGRAGSTGTAVSFFTDNNSKLGGDLCK  469

Query  633  SRGK  636
               +
Sbjct  470  IMRE  473


 Score = 100 bits (249),  Expect = 8e-21, Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 4/106 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F E G    + + V++  +  PT IQ +  P+ L G D++  A TGSGKT ++ +P 
Sbjct  104  ITSFDEAGFPDYVLKEVKQQGFPKPTSIQCQGWPMALSGRDMVGIASTGSGKTLSYCLPS  163

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            I  +      Q     G   I    +   +  +      S F   S
Sbjct  164  IVHI----NAQPLLSPGDGPIVLVLAPTRELAVQIQQECSKFGSSS  205


>sp|P41380|IF4A3_NICPL Eukaryotic initiation factor 4A-3 OS=Nicotiana 
plumbaginifolia OX=4092 PE=2 SV=1
Length=391

 Score = 326 bits (835),  Expect = 9e-104, Method: Composition-based stats.
 Identities = 117/442 (26%), Positives = 196/442 (44%), Gaps = 75/442 (17%)

Query  214  LAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQH  271
            L FE    ++  A F    +K+  L+  + +G E+     +   + +    D  ++    
Sbjct  6    LVFETSKGVEPIASFAEMGIKDDLLRGVYQYGFEKPSAIQQRAVLPIISGRD--VIAQAQ  63

Query  272  SGNAQVTQT--------KFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLI  323
            SG  + +              +  +ALI+ P+RELA QT   I     YI+   ++    
Sbjct  64   SGTGKTSMIALTVCQIVDTKSSEVQALILSPTRELAAQTEKVILAIGDYIN---VQAHAC  120

Query  324  IGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDF  383
            IGG +  + +  LE+GV +V GTPGR+ D++    L    ++ L+LDE+D +LS+G+ D 
Sbjct  121  IGGKSVGEDIRKLEHGVQVVSGTPGRVCDMIKRRTLRTRGIKLLILDESDEMLSRGFKDQ  180

Query  384  INRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHH  443
            I  ++  +P        LQV++ SATL + ++ +++ K M  P  + +K ++   + +  
Sbjct  181  IYDVYRYLP------PELQVVLISATLPN-EILEITSKFMTDPVRILVKRDELTLEGIKQ  233

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
              V V  +  +                                     L   Y    I  
Sbjct  234  FFVAVEKEEWKF----------------------------------DTLCDLYDTLTIT-  258

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
                QA+IFC TK   D L     +         + F+   +HGD    ER   +  F+ 
Sbjct  259  ----QAVIFCNTKRKVDWLTSKMRE---------NNFTVSSMHGDMPQKERDAIMAEFRG  305

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
            G  R LI TDV ARG+D+  V  VIN  LP+ ++ Y+HRIGR GR  R G+AI+ V ++ 
Sbjct  306  GTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDD  365

Query  624  EKVWYHVCSSRGKGCYNTRLKE  645
             K+   +     +  Y+T++ E
Sbjct  366  IKILRDI-----EQYYSTQIDE  382


 Score = 92.9 bits (229),  Expect = 7e-19, Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 2/141 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +A+F+EMG+  ++ + V +  +  P+ IQ  ++  I+ G DV+  A++G+GKT   ++ V
Sbjct  17   IASFAEMGIKDDLLRGVYQYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMIALTV  76

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120
             QIV     + Q      T      +      +  Y    A A    G        K  H
Sbjct  77   CQIVDTKSSEVQALILSPTRELAAQTEKVILAIGDYINVQAHAC-IGGKSVGEDIRKLEH  135

Query  121  GCRATKGLMKGKHYYEVSCHD  141
            G +   G   G+    +    
Sbjct  136  GVQVVSG-TPGRVCDMIKRRT  155


>sp|A5DE68|FAL1_PICGU ATP-dependent RNA helicase FAL1 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=FAL1 PE=3 
SV=2
Length=397

 Score = 326 bits (836),  Expect = 9e-104, Method: Composition-based stats.
 Identities = 116/444 (26%), Positives = 187/444 (42%), Gaps = 72/444 (16%)

Query  211  DLGLAFEIP-PHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIV  267
            D  L F      +K    F +  LK   LK  +N+G E          + + +  D    
Sbjct  8    DEELEFTKSTKKVKIYPTFESMNLKPELLKGIYNYGFEAPSAIQSRAIMQIIRGRDTIAQ  67

Query  268  KSQHSGNAQ------VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLREL  321
                +G         ++         +AL++ P+RELA+Q  N I+    Y++   +R  
Sbjct  68   AQSGTGKTATFSIGILSSIDTKSKDCQALVLSPTRELAQQIENVIEHLGDYMN---VRSH  124

Query  322  LIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYS  381
              IGG    + +  L+ G  I+ GTPGR+ D++    +    V+ LVLDEAD LL++G+ 
Sbjct  125  ACIGGTQVGEDVKKLQQGQHIISGTPGRVLDMIKRRNIMPRHVKMLVLDEADELLTKGFK  184

Query  382  DFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV  441
            + I  ++  +P         QV+V SATL   +V +++ K    P  + +K +D     +
Sbjct  185  EQIYEIYKTLPAGA------QVVVVSATLTP-EVLEMTNKFTSDPVKILVKRDDVTLKGI  237

Query  442  HHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI  501
                +    +                                         K +      
Sbjct  238  KQYYIQCEKED---------------------------------------WKFDTLCDLY  258

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
                + QA+IFC TK   + L             +   F+   +HGD K  +R   ++ F
Sbjct  259  DNLTITQAVIFCNTKAKVNWLAGQM---------RKSNFTVAAMHGDMKQEDRDSIMKEF  309

Query  562  KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT  621
            + G  R LI TDV ARGID+  V  VIN  LP +K+NYVHRIGR GR  R G AI+L+ +
Sbjct  310  RSGSTRVLISTDVWARGIDVQQVSLVINYDLPLDKENYVHRIGRSGRFGRKGTAINLLTS  369

Query  622  EKEKVWYHVCSSRGKGCYNTRLKE  645
            + +     +     +  Y+T+++E
Sbjct  370  QDKDELKSL-----QHYYSTKIRE  388


 Score = 97.5 bits (241),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 23/101 (23%), Positives = 41/101 (41%), Gaps = 9/101 (9%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F  M + PE+ + +    +  P+ IQ+ +I  I+ G D +  A++G+GKT  FSI ++ 
Sbjct  25   TFESMNLKPELLKGIYNYGFEAPSAIQSRAIMQIIRGRDTIAQAQSGTGKTATFSIGILS  84

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
             +    KD Q             S   +      +      
Sbjct  85   SIDTKSKDCQ---------ALVLSPTRELAQQIENVIEHLG  116


>sp|P24782|DBP2_SCHPO ATP-dependent RNA helicase dbp2 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp2 
PE=2 SV=2
Length=550

 Score = 331 bits (849),  Expect = 1e-103, Method: Composition-based stats.
 Identities = 124/526 (24%), Positives = 206/526 (39%), Gaps = 97/526 (18%)

Query  161  DKFGFGFGGTGKKSHNKQFDNYG-----EEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLA  215
            D   +G+   G+  +  + D  G     +++     I    D  K H             
Sbjct  44   DGASYGYDQRGQGRNFYESDGPGANLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTE  103

Query  216  FEIPPHMKNQAL-------------FPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAP  262
            +     +    L             FP  VLK         +  F+ P      A   A 
Sbjct  104  YRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKE------VKQLGFEAPTPIQQQAWPMAM  157

Query  263  DGYIVKSQHSGNAQVTQTKFLP--------------NAPKALIVEPSRELAEQTLNNIKQ  308
             G  +    +  +  T +  LP              + P  L++ P+RELA Q      +
Sbjct  158  SGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTK  217

Query  309  FKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLV  368
            F K   + ++R   + GGV    Q+  L  GV+I + TPGRL D++ + K NL +V +LV
Sbjct  218  FGK---SSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLV  274

Query  369  LDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTW  428
            LDEAD +L  G+   I ++ +QI          Q ++ SAT    +V++L+   ++    
Sbjct  275  LDEADRMLDMGFEPQIRKIVDQI------RPDRQTVMFSATWPK-EVQRLARDYLNDYIQ  327

Query  429  VDLKGEDSVPD-TVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSE  487
            V +   D      +  +V  V+    R   RLGK                          
Sbjct  328  VTVGSLDLAASHNIKQIVEVVDNADKR--ARLGK--------------------------  359

Query  488  AIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHG  547
                      +  + + + ++ +IF  TK   D++ ++  Q G         +  + +HG
Sbjct  360  ---------DIEEVLKDRDNKVLIFTGTKRVADDITRFLRQDG---------WPALAIHG  401

Query  548  DRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVG  607
            D+   ER   L  F+ G    ++ TDVA+RGID+ G+ +V N   P   ++YVHRIGR G
Sbjct  402  DKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTG  461

Query  608  RAERMGLAISLVATEKEKVWYHVCS--SRGKGCYNTRLKEDGGCTI  651
            RA   G A +   ++  K    + S  S  K   + +L+E    + 
Sbjct  462  RAGAKGTAYTYFTSDNAKQARELVSILSEAKQDIDPKLEEMARYSS  507


 Score = 101 bits (252),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 24/106 (23%), Positives = 46/106 (43%), Gaps = 4/106 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E G    + + V+++ +  PT IQ ++ P+ + G D++  + TGSGKT ++ +P 
Sbjct  121  VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPA  180

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            I  +      Q     G   I    +   +  +      + F   S
Sbjct  181  IVHI----NAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSS  222


>sp|Q4X195|DBP2_ASPFU ATP-dependent RNA helicase dbp2 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=dbp2 PE=3 SV=2
Length=547

 Score = 331 bits (848),  Expect = 1e-103, Method: Composition-based stats.
 Identities = 111/448 (25%), Positives = 188/448 (42%), Gaps = 69/448 (15%)

Query  208  NGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIV  267
            N  + G    +   +K Q       +++                    V +++   G  +
Sbjct  122  NFDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALS--------GRDVVGIAETGSGKTL  173

Query  268  KSQHSGNAQVTQTKFLP--NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
                     +     L   + P  LI+ P+RELA Q    I +F K   + ++R   + G
Sbjct  174  TYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGK---SSRIRNTCVYG  230

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            GV    Q+  L  GV++ + TPGRL D++  G+ NL +V +LVLDEAD +L  G+   I 
Sbjct  231  GVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIR  290

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED-SVPDTVHHV  444
            ++ +QI          Q  + SAT    +V++L+   ++    V++   D S    +  +
Sbjct  291  KIVSQI------RPDRQTCMWSATWPK-EVRQLATDFLNDYIQVNIGSMDLSANHRITQI  343

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
            V                                     E+ S+  K  K    +  I E+
Sbjct  344  V-------------------------------------EVVSDFEKRDKMIKHLEKIMEN  366

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
            + ++ +IF  TK   D + ++  Q G         +  + +HGD++  ER   L  FK G
Sbjct  367  RSNKCLIFTGTKRIADEITRFLRQDG---------WPALSIHGDKQQQERDWVLNEFKTG  417

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
                ++ TDVA+RGID+  + +V+N   P+  ++Y+HRIGR GRA   G AI+   TE  
Sbjct  418  KSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENS  477

Query  625  KVWYHVCS--SRGKGCYNTRLKEDGGCT  650
            K    + +  +  K   + RL E    +
Sbjct  478  KQARDLVTILTEAKQQIDPRLAEMARYS  505


 Score = 100 bits (250),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 43/106 (41%), Gaps = 4/106 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E G    +   V+   +  PT IQ++  P+ L G DV+  AETGSGKT  + +P 
Sbjct  120  VENFDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA  179

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            I  +      Q     G   I    +   +  +      S F   S
Sbjct  180  IVHI----NAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSS  221


>sp|Q6C4D4|DBP2_YARLI ATP-dependent RNA helicase DBP2 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP2 PE=3 
SV=1
Length=552

 Score = 330 bits (847),  Expect = 3e-103, Method: Composition-based stats.
 Identities = 110/443 (25%), Positives = 184/443 (42%), Gaps = 69/443 (16%)

Query  208  NGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIV  267
            N  + G    +   +K Q       ++                     + ++    G  +
Sbjct  117  NFDEAGFPPYVLKEVKQQGFEKPTAIQCQGWPMAL--------TGRDVIGIASTGSGKTL  168

Query  268  KSQHSGNAQVTQTKFLPNA--PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
                     +     L +   P  L++ P+RELA Q      +F K   + K+R   + G
Sbjct  169  SYCLPAIVHINAQPMLSHGDGPIVLVLAPTRELAVQIQQECSKFGK---SSKIRNTCVYG  225

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            GV    Q+  L  GV+IV+ TPGRL D++ +GK NL +V +LVLDEAD +L  G+   I 
Sbjct  226  GVPRGQQIRDLARGVEIVIATPGRLLDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIR  285

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG-EDSVPDTVHHV  444
            ++ +QI          Q ++ SAT    +V++L+   +     V++   E S    +  V
Sbjct  286  KIVDQI------RPDRQTLMWSATWPK-EVQRLAHDYLKDQIQVNIGSLELSASHNITQV  338

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
            V                                     E+ +E  K  +    +  + E+
Sbjct  339  V-------------------------------------EVCTEYEKRDRLVKHLETVMEN  361

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
            K  + +IF  TK   D++ ++  Q G         +  + +HGD++  ER   L  F++G
Sbjct  362  KESKCLIFTGTKRVADDITKFLRQDG---------WPALAIHGDKQQQERDWVLNEFRQG  412

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
                ++ TDVA+RGID+ G+ +VIN   P   ++YVHRIGR GRA   G A +    +  
Sbjct  413  KSPIMVATDVASRGIDVKGINFVINYDYPSNSEDYVHRIGRTGRAGTKGTAYTYFTEDNR  472

Query  625  KVWYHV--CSSRGKGCYNTRLKE  645
            K    +       K   + +L+E
Sbjct  473  KQARDLLVILREAKQHIDPKLEE  495


 Score = 102 bits (255),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 4/107 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E G  P + + V++  +  PT IQ +  P+ L G DV+  A TGSGKT ++ +P 
Sbjct  115  VTNFDEAGFPPYVLKEVKQQGFEKPTAIQCQGWPMALTGRDVIGIASTGSGKTLSYCLPA  174

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            I  +      Q     G   I    +   +  +      S F   S 
Sbjct  175  IVHI----NAQPMLSHGDGPIVLVLAPTRELAVQIQQECSKFGKSSK  217


>sp|A1DGZ7|DBP2_NEOFI ATP-dependent RNA helicase dbp2 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp2 
PE=3 SV=1
Length=545

 Score = 330 bits (846),  Expect = 3e-103, Method: Composition-based stats.
 Identities = 111/443 (25%), Positives = 187/443 (42%), Gaps = 69/443 (16%)

Query  208  NGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIV  267
            N  + G    +   +K Q       +++                    V +++   G  +
Sbjct  120  NFDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALS--------GRDVVGIAETGSGKTL  171

Query  268  KSQHSGNAQVTQTKFLP--NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
                     +     L   + P  LI+ P+RELA Q    I +F K   + ++R   + G
Sbjct  172  TYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQTEISKFGK---SSRIRNTCVYG  228

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            GV    Q+  L  GV++ + TPGRL D++  G+ NL +V +LVLDEAD +L  G+   I 
Sbjct  229  GVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIR  288

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED-SVPDTVHHV  444
            ++ +QI          Q  + SAT    +V++L+   ++    V++   D S    +  +
Sbjct  289  KIISQI------RPDRQTCMWSATWPK-EVRQLATDFLNDYIQVNIGSMDLSANHRITQI  341

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
            V                                     E+ S+  K  K    +  I E+
Sbjct  342  V-------------------------------------EVVSDFEKRDKMIKHLEKIMEN  364

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
            + ++ +IF  TK   D + ++  Q G         +  + +HGD++  ER   L  FK G
Sbjct  365  RGNKCLIFTGTKRIADEITRFLRQDG---------WPALSIHGDKQQQERDWVLNEFKTG  415

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
                ++ TDVA+RGID+  + +V+N   P+  ++Y+HRIGR GRA   G AI+   TE  
Sbjct  416  KSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENS  475

Query  625  KVWYHVCS--SRGKGCYNTRLKE  645
            K    + +  +  K   + RL E
Sbjct  476  KQARDLVTILTEAKQQIDPRLAE  498


 Score = 100 bits (250),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 43/106 (41%), Gaps = 4/106 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E G    +   V+   +  PT IQ++  P+ L G DV+  AETGSGKT  + +P 
Sbjct  118  VENFDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA  177

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            I  +      Q     G   I    +   +  +      S F   S
Sbjct  178  IVHI----NAQPLLAPGDGPIVLILAPTRELAVQIQTEISKFGKSS  219


>sp|G0SFM2|DBP2_CHATD ATP-dependent RNA helicase DBP2 OS=Chaetomium 
thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) 
OX=759272 GN=DBP2 PE=3 SV=2
Length=556

 Score = 330 bits (846),  Expect = 4e-103, Method: Composition-based stats.
 Identities = 108/429 (25%), Positives = 183/429 (43%), Gaps = 69/429 (16%)

Query  218  IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQV  277
            +   +K Q       ++                     V +++   G  +         +
Sbjct  140  VMDEVKAQGFPAPTAIQAQGWPMALS--------GRDVVGIAETGSGKTLTYCLPAIVHI  191

Query  278  TQTKFLP--NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
                 L   + P  L++ P+RELA Q    I +F K   + ++R   I GGV    Q+  
Sbjct  192  NAQPLLAPGDGPIVLVLAPTRELAVQIQQEINKFGK---SSRIRNTCIYGGVPKGPQIRD  248

Query  336  LENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
            L+ GV++ + TPGRL D++ +GK NL +V +LVLDEAD +L  G+   I ++ +QI    
Sbjct  249  LQRGVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQI----  304

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPD-TVHHVV--VPVNPKT  452
                  Q ++ SAT    +V+ L+   +     V++   D   +  +  +V  +  + K 
Sbjct  305  --RPDRQTLMWSATWPK-EVRNLAADFLTDFIQVNIGSLDLAANHRITQIVEVISESEKR  361

Query  453  DRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF  512
            DRL + L K     D                                       ++ +IF
Sbjct  362  DRLIKHLEKIMDSRDT-------------------------------------QNKCLIF  384

Query  513  CRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICT  572
              TK   D++ ++  Q G         +  + +HGD++ +ER   L++FK G    ++ T
Sbjct  385  VGTKRVADDITRFLRQDG---------WPALSIHGDKQQNERDWVLDQFKTGKSPIMVAT  435

Query  573  DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
            DVA+RGID+  + +VIN   P+  ++Y+HRIGR GRA   G AI+   TE  K    + S
Sbjct  436  DVASRGIDVRNITHVINYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENAKQARDLVS  495

Query  633  SRGKGCYNT  641
               +   + 
Sbjct  496  VLQEAKQHV  504


 Score = 100 bits (248),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 43/106 (41%), Gaps = 4/106 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E G    +   V+   +  PT IQA+  P+ L G DV+  AETGSGKT  + +P 
Sbjct  128  VETFDEAGFPRYVMDEVKAQGFPAPTAIQAQGWPMALSGRDVVGIAETGSGKTLTYCLPA  187

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            I  +      Q     G   I    +   +  +      + F   S
Sbjct  188  IVHI----NAQPLLAPGDGPIVLVLAPTRELAVQIQQEINKFGKSS  229


>sp|Q4PHU9|DBP2_USTMA ATP-dependent RNA helicase DBP2 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP2 PE=3 SV=2
Length=552

 Score = 330 bits (845),  Expect = 5e-103, Method: Composition-based stats.
 Identities = 103/430 (24%), Positives = 172/430 (40%), Gaps = 68/430 (16%)

Query  218  IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQV  277
            I   +K         +++                    VA+++   G  +         +
Sbjct  141  ILSEIKKMGFSEPSAIQSQAWPMALS--------GRDLVAIAETGSGKTIGFALPAMVHI  192

Query  278  TQTKFLP--NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
                 L   + P ALI+ P+RELA Q      +F     + +LR   + GGV    Q+  
Sbjct  193  NAQPLLKPGDGPIALILAPTRELANQIQVECNRFG---GSSRLRTCAVYGGVPKGPQIRD  249

Query  336  LENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
            L+ G +I + TPGRL D+V  GK NL +V +LV+DEAD +L  G+   I ++  QI    
Sbjct  250  LQRGAEICIATPGRLIDMVDAGKTNLRRVTYLVMDEADRMLDMGFEPQIRKILQQI----  305

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG-EDSVPDTVHHVVVPVNPKTDR  454
                  Q ++ SAT    +V++L+   ++    V++   E +    V  ++         
Sbjct  306  --RPDRQTLMFSATWPK-EVQRLAGDFLNNYAQVNIGSTELAANHNVKQIIEVCTE----  358

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
                                          + +  K++     + A    +  + IIF  
Sbjct  359  ------------------------------FEKKGKLIGHLETISA----ENGKVIIFTS  384

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
            TK   D+L ++  Q G         +  + +HGD++  ER   L  FK G    ++ T V
Sbjct  385  TKRVADDLTKFLRQDG---------WPALAIHGDKQQQERDWVLAEFKSGRSPIMVATAV  435

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            A+RG+D+  + YVIN   P   ++YVH+IGR GRA R G A +    E  K    +    
Sbjct  436  ASRGLDVKDISYVINYDFPTNTEDYVHQIGRTGRAGRTGTAYTYFTPENSKSARELIGIL  495

Query  635  GKGCYNTRLK  644
             +       +
Sbjct  496  REAKQEIPRE  505


 Score = 102 bits (255),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 4/106 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F E G    I   +++M +  P+ IQ+++ P+ L G D++  AETGSGKT  F++P 
Sbjct  129  VTSFDEAGFPDYILSEIKKMGFSEPSAIQSQAWPMALSGRDLVAIAETGSGKTIGFALPA  188

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            +  +      Q   K G   I    +   +         + F   S
Sbjct  189  MVHI----NAQPLLKPGDGPIALILAPTRELANQIQVECNRFGGSS  230


>sp|Q59LU0|DBP2_CANAL ATP-dependent RNA helicase DBP2 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP2 
PE=3 SV=2
Length=562

 Score = 330 bits (845),  Expect = 5e-103, Method: Composition-based stats.
 Identities = 107/424 (25%), Positives = 178/424 (42%), Gaps = 71/424 (17%)

Query  218  IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQV  277
            +   +K+Q       ++                     + ++    G  +         +
Sbjct  138  VLQEVKDQGFPKPTPIQCQGWPMALS--------GRDMIGIAATGSGKTLSYCLPSIVHI  189

Query  278  TQTKFLP--NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
                 L   + P  L++ P+RELA Q      +F K   + ++R   + GG     Q+  
Sbjct  190  NAQPQLQYGDGPIVLVLAPTRELAVQIQTECSKFGK---SSRIRNTCVYGGAPKGPQIRD  246

Query  336  LENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
            L  GV+I + TPGRL D++  GK NL +V +LVLDEAD +L  G+   I ++ +QI    
Sbjct  247  LARGVEICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQI----  302

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG-EDSVPDTVHHVVVPVN--PKT  452
                  Q ++ SAT    +V++L+   ++ P  V +   E +   T+  +V  ++   K 
Sbjct  303  --RPDRQTLMWSATWPK-EVQQLTRDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKR  359

Query  453  DRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF  512
            DRL + L  +                                          K ++ ++F
Sbjct  360  DRLVKHLESAL---------------------------------------NEKDNKILVF  380

Query  513  CRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICT  572
              TK  CD +  Y    G         +  + +HGD++ +ER   L+ F+KG    ++ T
Sbjct  381  ASTKRTCDEITTYLRSDG---------WPALAIHGDKEQNERDWVLDEFRKGKTSIMVAT  431

Query  573  DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
            DVAARGID+ G+ +VIN  +P   ++YVHRIGR GR    G AIS       K+   +C 
Sbjct  432  DVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSKLGGDLCK  491

Query  633  SRGK  636
               +
Sbjct  492  IMRE  495


 Score = 104 bits (259),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 4/106 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E G    + Q V++  +  PT IQ +  P+ L G D++  A TGSGKT ++ +P 
Sbjct  126  ITTFDEAGFPDYVLQEVKDQGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPS  185

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            I  +      Q + + G   I    +   +  +      S F   S
Sbjct  186  IVHI----NAQPQLQYGDGPIVLVLAPTRELAVQIQTECSKFGKSS  227


>sp|Q2U070|DBP2_ASPOR ATP-dependent RNA helicase dbp2 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp2 
PE=3 SV=1
Length=554

 Score = 329 bits (844),  Expect = 6e-103, Method: Composition-based stats.
 Identities = 108/433 (25%), Positives = 184/433 (42%), Gaps = 69/433 (16%)

Query  218  IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQV  277
            +   +K Q       +++                    V +++   G  +         +
Sbjct  141  VLSEVKAQGFERPTAIQSQGWPMALS--------GRDVVGIAETGSGKTLSYCLPAIVHI  192

Query  278  TQTKFLP--NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
                 L   + P  L++ P+RELA Q    I +F K   + ++R   + GGV    Q+  
Sbjct  193  NAQPLLAPGDGPIVLVLAPTRELAVQIQAEITKFGK---SSRIRNTCVYGGVPKGPQIRD  249

Query  336  LENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
            L  GV++ + TPGRL D++  G+ NL +V +LVLDEAD +L  G+   I ++ +QI    
Sbjct  250  LSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQI----  305

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED-SVPDTVHHVVVPVNPKTDR  454
                  Q  + SAT    +V++L+   ++    V++   D S    +  +V         
Sbjct  306  --RPDRQTCMWSATWPK-EVRQLASDFLNDYIQVNIGSMDLSANHRITQIV---------  353

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
                                        E+ S+  K  K    +  I E++ ++ +IF  
Sbjct  354  ----------------------------EVVSDFEKRDKMIKHLEKIMENRGNKCLIFTG  385

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
            TK   D + ++  Q G         +  + +HGD++  ER   L  FK G    ++ TDV
Sbjct  386  TKRIADEITRFLRQDG---------WPALSIHGDKQQQERDWVLNEFKTGKSPIMVATDV  436

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS--  632
            A+RGID+  + +V+N   P+  ++YVHRIGR GRA   G AI+   T+  K    + +  
Sbjct  437  ASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSKQARDLVTIL  496

Query  633  SRGKGCYNTRLKE  645
            +  K   + RL E
Sbjct  497  TEAKQQIDPRLAE  509


 Score = 102 bits (253),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 44/106 (42%), Gaps = 4/106 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E G    +   V+   +  PT IQ++  P+ L G DV+  AETGSGKT ++ +P 
Sbjct  129  VETFDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPA  188

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            I  +      Q     G   I    +   +  +      + F   S
Sbjct  189  IVHI----NAQPLLAPGDGPIVLVLAPTRELAVQIQAEITKFGKSS  230


>sp|A5DL80|DBP2_PICGU ATP-dependent RNA helicase DBP2 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP2 PE=3 
SV=3
Length=554

 Score = 329 bits (844),  Expect = 7e-103, Method: Composition-based stats.
 Identities = 123/481 (26%), Positives = 192/481 (40%), Gaps = 78/481 (16%)

Query  161  DKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPP  220
            +K  +            +  ++ +E   HD      DI K    F     + G    +  
Sbjct  86   EKNFYSEHPDVSARSESEVQSFRKE---HDMKCVGTDIPKPITSFD----EAGFPDYVLN  138

Query  221  HMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDG----YIVKSQHSGNAQ  276
             +K Q       ++                     + ++    G    Y + S    NAQ
Sbjct  139  EVKQQGFPKPTAIQCQGWPMALS--------GRDMIGIAATGSGKTLSYCLPSIVHINAQ  190

Query  277  VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL  336
                    + P  L++ P+RELA Q      +F     + ++R   I GG     Q+  L
Sbjct  191  PLLGPG--DGPIVLVLAPTRELAVQIQQECSKFGA---SSRIRNTCIYGGAPKGQQIRDL  245

Query  337  ENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTS  396
              GV+I + TPGRL D++ TGK NL +V +LVLDEAD +L  G+   I ++ +QI     
Sbjct  246  ARGVEICIATPGRLIDMLETGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQI-----  300

Query  397  DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG-EDSVPDTVHHVVVPVNPKTDRL  455
                 Q ++ SAT    +V+ L+   ++ P  V +   E +   T+  +V          
Sbjct  301  -RPDRQTLMWSATWPK-EVQTLTRDYLNDPIQVTIGSLELAASHTITQIV----------  348

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRT  515
                                       E+ SE  K  +    +      K  + +IF  T
Sbjct  349  ---------------------------EVLSEFEKRDRLVKHLETATADKEAKVLIFSST  381

Query  516  KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA  575
            K  CD +  Y    G         +  + +HGD++ +ER   L  FK G    ++ TDVA
Sbjct  382  KRACDEITSYLRADG---------WPALAIHGDKQQNERDWVLREFKTGKSPIMVATDVA  432

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRG  635
            ARGID+ G+ YVIN  +P   ++YVHRIGR GRA   G A+SL      K+   +C    
Sbjct  433  ARGIDVKGISYVINYDMPGNIEDYVHRIGRTGRAGTTGTAVSLFTEANSKLGGDLCKIMR  492

Query  636  K  636
            +
Sbjct  493  E  493


 Score = 100 bits (248),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 44/106 (42%), Gaps = 4/106 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F E G    +   V++  +  PT IQ +  P+ L G D++  A TGSGKT ++ +P 
Sbjct  124  ITSFDEAGFPDYVLNEVKQQGFPKPTAIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPS  183

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            I  +      Q     G   I    +   +  +      S F   S
Sbjct  184  IVHI----NAQPLLGPGDGPIVLVLAPTRELAVQIQQECSKFGASS  225


>sp|A7E449|DBP2_SCLS1 ATP-dependent RNA helicase dbp2 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=dbp2 PE=3 SV=1
Length=572

 Score = 329 bits (844),  Expect = 1e-102, Method: Composition-based stats.
 Identities = 123/455 (27%), Positives = 193/455 (42%), Gaps = 79/455 (17%)

Query  208  NGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIV  267
            N    G     P    ++A FPA V+           + F  P          A  G  V
Sbjct  136  NIAVQGPNIPKPVETFDEAGFPAYVMTE------VKAQGFPAPTPIQSQGWPMALSGRDV  189

Query  268  KSQHSGNAQVTQTKFLP--------------NAPKALIVEPSRELAEQTLNNIKQFKKYI  313
                   +  T T  LP              + P  L++ P+RELA Q    I +F K  
Sbjct  190  VGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGK--  247

Query  314  DNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEAD  373
             + ++R   + GGV    Q+  L  GV++ + TPGRL D++ +GK NL +V +LVLDEAD
Sbjct  248  -SSRIRNTCVYGGVPKGGQIRDLAKGVEVCIATPGRLIDMIESGKTNLRRVTYLVLDEAD  306

Query  374  GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG  433
             +L  G+   I ++  QI          Q  + SAT    +V+ L+   ++    V++  
Sbjct  307  RMLDMGFEPQIRKILGQI------RPDRQTCMWSATWPK-EVRALASDYLNDFIQVNIGS  359

Query  434  -EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKIL  492
             E S    +  +V                                     E+ SE  K  
Sbjct  360  LELSANHRITQIV-------------------------------------EVVSEFEKRD  382

Query  493  KGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPH  552
            K    +  I E K ++ +IF  TK   D++ ++  Q G         +  + +HGD++ +
Sbjct  383  KMTKHLEKIMEDKDNKILIFTGTKRVADDITRFLRQDG---------WPALSIHGDKQQN  433

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM  612
            ER   L  FK G    ++ TDVA+RGID+  + +V N   P+  ++Y+HRIGR GRA + 
Sbjct  434  ERDWVLNEFKTGKSPIMVATDVASRGIDVRNITHVFNYDYPNNSEDYIHRIGRTGRAGQK  493

Query  613  GLAISLVATEKEKVWYHVCS--SRGKGCYNTRLKE  645
            G AI+L  T+ +K    + +  +  K   + RL E
Sbjct  494  GTAITLFTTDNQKQARDLVNVLTEAKQVIDPRLAE  528


 Score = 100 bits (249),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 43/106 (41%), Gaps = 4/106 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E G    +   V+   +  PT IQ++  P+ L G DV+  AETGSGKT  + +P 
Sbjct  148  VETFDEAGFPAYVMTEVKAQGFPAPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA  207

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            I  +      Q     G   I    +   +  +      + F   S
Sbjct  208  IVHI----NAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSS  249


>sp|A6SFW7|DBP2_BOTFB ATP-dependent RNA helicase dbp2 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=dbp2 PE=3 SV=2
Length=514

 Score = 327 bits (839),  Expect = 1e-102, Method: Composition-based stats.
 Identities = 123/455 (27%), Positives = 193/455 (42%), Gaps = 79/455 (17%)

Query  208  NGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIV  267
            N    G     P    ++A FPA V+           + F  P          A  G  V
Sbjct  89   NIAVQGPNIPKPVETFDEAGFPAYVMTE------VKAQGFPAPTPIQSQGWPMALSGRDV  142

Query  268  KSQHSGNAQVTQTKFLP--------------NAPKALIVEPSRELAEQTLNNIKQFKKYI  313
                   +  T T  LP              + P  L++ P+RELA Q    I +F K  
Sbjct  143  VGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGK--  200

Query  314  DNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEAD  373
             + ++R   + GGV    Q+  L  GV++ + TPGRL D++ +GK NL +V +LVLDEAD
Sbjct  201  -SSRIRNTCVYGGVPKGGQIRDLAKGVEVCIATPGRLIDMIESGKTNLRRVTYLVLDEAD  259

Query  374  GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG  433
             +L  G+   I ++  QI          Q  + SAT    +V+ L+   ++    V++  
Sbjct  260  RMLDMGFEPQIRKILGQI------RPDRQTCMWSATWPK-EVRALASDYLNEFIQVNIGS  312

Query  434  -EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKIL  492
             E S    +  +V                                     E+ SE  K  
Sbjct  313  LELSANHRITQIV-------------------------------------EVVSEFEKRD  335

Query  493  KGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPH  552
            K    +  I E K ++ +IF  TK   D++ ++  Q G         +  + +HGD++ +
Sbjct  336  KMTKHLEKIMEDKDNKILIFTGTKRVADDITRFLRQDG---------WPALSIHGDKQQN  386

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM  612
            ER   L  FK G    ++ TDVA+RGID+  + +V N   P+  ++Y+HRIGR GRA + 
Sbjct  387  ERDWVLNEFKTGKSPIMVATDVASRGIDVRNITHVFNYDYPNNSEDYIHRIGRTGRAGQK  446

Query  613  GLAISLVATEKEKVWYHVCS--SRGKGCYNTRLKE  645
            G AI+L  T+ +K    + +  +  K   + RL E
Sbjct  447  GTAITLFTTDNQKQARDLVNVLTEAKQVIDPRLAE  481


 Score = 100 bits (248),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 43/106 (41%), Gaps = 4/106 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E G    +   V+   +  PT IQ++  P+ L G DV+  AETGSGKT  + +P 
Sbjct  101  VETFDEAGFPAYVMTEVKAQGFPAPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA  160

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            I  +      Q     G   I    +   +  +      + F   S
Sbjct  161  IVHI----NAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSS  202


>sp|A6RGE3|DBP2_AJECN ATP-dependent RNA helicase DBP2 OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=DBP2 PE=3 
SV=1
Length=542

 Score = 328 bits (840),  Expect = 2e-102, Method: Composition-based stats.
 Identities = 111/435 (26%), Positives = 185/435 (43%), Gaps = 68/435 (16%)

Query  218  IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQV  277
            +   +K Q       ++                     V +++   G  +         +
Sbjct  136  VMSEVKAQGFARPTAIQAQGWPMALS--------GRDVVGIAETGSGKTLTYCLPAIVHI  187

Query  278  TQTKFLP--NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
                 L   + P  L++ P+RELA Q    I +F K   + ++R   + GGV    Q+  
Sbjct  188  NAQPLLAPGDGPIVLVLAPTRELAVQIQTEITKFGK---SSRIRNTCVYGGVPKGPQIRD  244

Query  336  LENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
            L  GV++ + TPGRL D++  GK NL +V +LVLDEAD +L  G+   I ++ +QI    
Sbjct  245  LTRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQI----  300

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED-SVPDTVHHVVVPVNPKTDR  454
                  Q  + SAT    DV++L++  +H    V++   D S    +  +V  V+    R
Sbjct  301  --RPDRQTCMWSATWPK-DVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKR  357

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
                                                    ++  R ++ +K  + +IF  
Sbjct  358  ------------------------------------DRMAKHLDRIMEANKHSKVLIFTG  381

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
            TK   D++ ++  Q G         +  + +HGD++ +ER   L  FK G    ++ TDV
Sbjct  382  TKRVADDITRFLRQDG---------WPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDV  432

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS--  632
            A+RGID+  + +V+N   P+  ++YVHRIGR GRA   G AI+L  T+  K    + +  
Sbjct  433  ASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNAKQARDLVAIL  492

Query  633  SRGKGCYNTRLKEDG  647
            S  K   + RL E  
Sbjct  493  SESKQQIDPRLAEMA  507


 Score = 100 bits (249),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 43/106 (41%), Gaps = 4/106 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E G    +   V+   +  PT IQA+  P+ L G DV+  AETGSGKT  + +P 
Sbjct  124  VETFDEAGFPQYVMSEVKAQGFARPTAIQAQGWPMALSGRDVVGIAETGSGKTLTYCLPA  183

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            I  +      Q     G   I    +   +  +      + F   S
Sbjct  184  IVHI----NAQPLLAPGDGPIVLVLAPTRELAVQIQTEITKFGKSS  225


>sp|A2QC74|DBP2_ASPNC ATP-dependent RNA helicase dbp2 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=dbp2 PE=3 SV=1
Length=565

 Score = 328 bits (841),  Expect = 2e-102, Method: Composition-based stats.
 Identities = 109/433 (25%), Positives = 184/433 (42%), Gaps = 69/433 (16%)

Query  218  IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQV  277
            +   +K Q       +++                    V +++   G  +         +
Sbjct  148  VLSEVKAQGFDRPTAIQSQGWPMALS--------GRDVVGIAETGSGKTLTYCLPAIVHI  199

Query  278  TQTKFLP--NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
                 L   + P  LI+ P+RELA Q    I +F K   + ++R   + GGV    Q+  
Sbjct  200  NAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGK---SSRIRNTCVYGGVPKGPQIRD  256

Query  336  LENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
            L  GV++ + TPGRL D++  G+ NL +V +LVLDEAD +L  G+   I ++ +QI    
Sbjct  257  LSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQI----  312

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED-SVPDTVHHVVVPVNPKTDR  454
                  Q  + SAT    +V++L+   ++    V++   D S    +  +V         
Sbjct  313  --RPDRQTCMWSATWPK-EVRQLASDFLNDYIQVNIGSMDLSANHRITQIV---------  360

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
                                        E+ S+  K  K    +  I E++ ++ +IF  
Sbjct  361  ----------------------------EVVSDFEKRDKMIKHLEKIMENRANKCLIFTG  392

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
            TK   D + ++  Q G         +  + +HGD++  ER   L  FK G    ++ TDV
Sbjct  393  TKRIADEITRFLRQDG---------WPALSIHGDKQQQERDWVLNEFKTGKSPIMVATDV  443

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS--  632
            A+RGID+  + +V+N   P+  ++YVHRIGR GRA   G AI+   T+  K    + +  
Sbjct  444  ASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSKQARDLVTIL  503

Query  633  SRGKGCYNTRLKE  645
            +  K   + RL E
Sbjct  504  TEAKQQIDPRLAE  516


 Score = 101 bits (252),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 43/106 (41%), Gaps = 4/106 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E G    +   V+   +  PT IQ++  P+ L G DV+  AETGSGKT  + +P 
Sbjct  136  VETFDEAGFPQYVLSEVKAQGFDRPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA  195

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            I  +      Q     G   I    +   +  +      S F   S
Sbjct  196  IVHI----NAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSS  237


>sp|Q8Y8N0|CSHA_LISMO ATP-dependent RNA helicase CshA OS=Listeria 
monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) 
OX=169963 GN=cshA PE=2 SV=1
Length=520

 Score = 327 bits (837),  Expect = 2e-102, Method: Composition-based stats.
 Identities = 108/431 (25%), Positives = 176/431 (41%), Gaps = 70/431 (16%)

Query  212  LGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQH  271
             GL  +I   +       A  ++   +                 +  ++   G       
Sbjct  7    FGLDEKIVKSVNRMGFEEATPIQEKTIPLGL--------EGKDLIGQAQTGTGKTAAF--  56

Query  272  SGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARD  331
             G   + +     N  +ALI+ P+RELA Q    + +      +  +R L + GG     
Sbjct  57   -GLPMIHKIDQKSNNVQALIIAPTRELAIQVSEELYKLS---YDKHVRVLAVYGGSDISR  112

Query  332  QLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQI  391
            Q+  L+    IVVGTPGR+ D ++   L L  V  LVLDEAD +L+ G+ D I  +  ++
Sbjct  113  QIRSLKKNPQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEV  172

Query  392  PQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPK  451
            P         Q ++ SAT+    ++++ E+ MH P  + +K ++     +    V V+ K
Sbjct  173  PA------ERQTLLFSATMPDP-IRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEK  225

Query  452  TDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAII  511
                                                     K +   R +     + AI+
Sbjct  226  E----------------------------------------KFDVLSRLLDVQAPELAIV  245

Query  512  FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLIC  571
            F RTK   D L +    +G         +    +HGD    +R   L +FK+G +  L+ 
Sbjct  246  FGRTKRRVDELSRALDMRG---------YVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVA  296

Query  572  TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVC  631
            TDVAARG+DI GV +V N  +P + ++YVHRIGR GRA + G+AI+ V   +      V 
Sbjct  297  TDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVE  356

Query  632  SSRGKGCYNTR  642
             +  K     +
Sbjct  357  ETTKKRMQPLQ  367


 Score = 107 bits (266),  Expect = 6e-23, Method: Composition-based stats.
 Identities = 39/130 (30%), Positives = 57/130 (44%), Gaps = 2/130 (2%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M  FSE G+  +I ++V  M +   T IQ ++IPL L G D++  A+TG+GKT AF +P+
Sbjct  1    MTKFSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLEGKDLIGQAQTGTGKTAAFGLPM  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGAS--VLNKWQMNPYDRGSAFAIGSDGLCCQSREVKE  118
            I  + +   + Q      T          L K   + + R  A   GSD         K 
Sbjct  61   IHKIDQKSNNVQALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKN  120

Query  119  WHGCRATKGL  128
                  T G 
Sbjct  121  PQIVVGTPGR  130


>sp|Q0DB53|RH52A_ORYSJ DEAD-box ATP-dependent RNA helicase 52A 
OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0602400 PE=2 
SV=2
Length=602

 Score = 329 bits (844),  Expect = 3e-102, Method: Composition-based stats.
 Identities = 98/370 (26%), Positives = 161/370 (44%), Gaps = 54/370 (15%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
             P+AL++ P+RELA Q     K+F        LR ++  GG    +QL  LE G DI+V 
Sbjct  168  KPRALVLAPTRELAAQINEEAKKFS---FQTGLRVVVAYGGTPMYNQLRDLERGADILVA  224

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGRL D+V   K++L  +++LV+DEAD +L  G+   I ++  ++          Q ++
Sbjct  225  TPGRLVDMVERSKVSLEAIKYLVMDEADRMLDMGFEPQIRKIVERMN--MPRKSVRQTML  282

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT    ++++L+   +    ++ +    S  D +   V  ++    R +         
Sbjct  283  FSATFPP-EIQRLASDFLSNYIFITVGRVGSSTDLIMQKVELLSDGEKRGY---------  332

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                                   + +L+ +    A  + +    ++F  TK + D+L  +
Sbjct  333  ----------------------LLDLLQRQSVGVANSKLQQPLTLVFVETKREADSLRYW  370

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
               +G         F    +HGDR   ER+  L  FK G    ++ TDVA+RG+D+  V 
Sbjct  371  LYSKG---------FPATAIHGDRTQQERESALRSFKTGLTPIMVATDVASRGLDVPNVA  421

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            +VIN  LP   ++YVHRIGR GRA + G A +               S  KG      + 
Sbjct  422  HVINYDLPKSIEDYVHRIGRTGRAGKAGSATAFFTESD--------HSLAKGLLELMTEA  473

Query  646  DGGCTIWYNE  655
                  W  +
Sbjct  474  KQDVPDWLVQ  483


 Score = 96.0 bits (237),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 7/107 (7%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F   G++  + + V    +  PT +Q  S+P+ L G D++  A+TGSGKT AF +PV+  
Sbjct  86   FEAAGLVEAVLRNVARCGYESPTPVQRYSMPIALAGRDLMACAQTGSGKTAAFCLPVVSG  145

Query  64   VYE-------TLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
            +           +     +          +   +      +    F+
Sbjct  146  LVAAGGSGIGHRERSSFNRAAAKPRALVLAPTRELAAQINEEAKKFS  192


>sp|Q1DP69|DBP2_COCIM ATP-dependent RNA helicase DBP2 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DBP2 PE=3 SV=2
Length=545

 Score = 327 bits (839),  Expect = 3e-102, Method: Composition-based stats.
 Identities = 110/433 (25%), Positives = 183/433 (42%), Gaps = 69/433 (16%)

Query  220  PHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQ  279
              +K Q       +++                    V +++   G  +         +  
Sbjct  141  SEVKAQGFAKPTPIQSQGWPMALS--------GRDVVGIAETGSGKTLTYCLPAIVHINA  192

Query  280  TKFLP--NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE  337
               L   + P  L++ P+RELA Q    I +F K   + ++R   + GGV    Q+  L 
Sbjct  193  QPLLGPGDGPIVLVLAPTRELAVQIQAEITKFGK---SSRIRNTCVYGGVPRGPQIRDLS  249

Query  338  NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD  397
             GV++ + TPGRL D++  GK NL +V +LVLDEAD +L  G+   I ++  QI      
Sbjct  250  RGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQI------  303

Query  398  GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED-SVPDTVHHVVVPVNPKTDRLW  456
                Q  + SAT    +V++L+   +H    V +  +D S    +  +V           
Sbjct  304  RPDRQTCMWSATWPK-EVRQLAHDFLHDYIQVYIGSQDLSANHRITQIV-----------  351

Query  457  ERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTK  516
                                      E+ S+  K  +    +  I + K  + +IF  TK
Sbjct  352  --------------------------EIVSDFEKRDRMINHLERIMDDKKSKILIFTGTK  385

Query  517  IDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAA  576
               D++ ++  Q G         +  + +HGD++ +ER   L  FK G    ++ TDVA+
Sbjct  386  RVADDITRFLRQDG---------WPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVAS  436

Query  577  RGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS--SR  634
            RGID+  + +V+N   P+  ++YVHRIGR GRA   G AI+L  T+  K    + +  + 
Sbjct  437  RGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNAKQARDLVNILTE  496

Query  635  GKGCYNTRLKEDG  647
             K   + RL E  
Sbjct  497  SKQQIDPRLAEMA  509


 Score = 102 bits (253),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 43/106 (41%), Gaps = 4/106 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E G    +   V+   +  PT IQ++  P+ L G DV+  AETGSGKT  + +P 
Sbjct  127  VETFDEAGFPQYVISEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA  186

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            I  +      Q     G   I    +   +  +      + F   S
Sbjct  187  IVHI----NAQPLLGPGDGPIVLVLAPTRELAVQIQAEITKFGKSS  228


>sp|Q501J6|DDX17_MOUSE Probable ATP-dependent RNA helicase DDX17 
OS=Mus musculus OX=10090 GN=Ddx17 PE=1 SV=1
Length=650

 Score = 330 bits (847),  Expect = 3e-102, Method: Composition-based stats.
 Identities = 112/460 (24%), Positives = 182/460 (40%), Gaps = 63/460 (14%)

Query  252  KDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP--NAPKALIVEPSRELAEQTLNNIKQF  309
                V +++   G  +         +    +L   + P  L++ P+RELA+Q       +
Sbjct  129  GRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDY  188

Query  310  KKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVL  369
             K     +L+   I GG     Q+  LE GV+I + TPGRL D + +GK NL +  +LVL
Sbjct  189  GKC---SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVL  245

Query  370  DEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWV  429
            DEAD +L  G+   I ++ +QI          Q ++ SAT    +V++L+E  +   T +
Sbjct  246  DEADRMLDMGFEPQIRKIVDQI------RPDRQTLMWSATWPK-EVRQLAEDFLRDYTQI  298

Query  430  DLKG-EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEA  488
            ++   E S    +  +V                                         E+
Sbjct  299  NVGNLELSANHNILQIVDVCM-------------------------------------ES  321

Query  489  IKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGD  548
             K  K    +  I   K ++ IIF  TK  CD+L +   + G         +  +C+HGD
Sbjct  322  EKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDG---------WPAMCIHGD  372

Query  549  RKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
            +   ER   L  F+ G    LI TDVA+RG+D+  V +VIN   P+  ++YVHRIGR  R
Sbjct  373  KSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTAR  432

Query  609  AERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNC  668
            +   G A +       K    +     +   N  +       + +               
Sbjct  433  STNKGTAYTFFTPGNLKQARELIKVLEEA--NQAINPKLMQLVDHRGGGGGGGGRSRYRT  490

Query  669  TISQVEPDI--KVPVDEFDGKVTYGQKRAAGGGSYKGHVD  706
            T S   P++  +   D     V  G +R +     +   D
Sbjct  491  TSSANNPNLMYQDECDRRLRGVKDGGRRDSTSYRDRSETD  530


 Score = 95.6 bits (236),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 29/141 (21%), Positives = 51/141 (36%), Gaps = 9/141 (6%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            AF        +   + +  +  PT IQ +  PL L G D++  A+TGSGKT A+ +P I 
Sbjct  93   AFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIV  152

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGC  122
             +      Q   ++G   I    +   +           +     G C + +    + G 
Sbjct  153  HI----NHQPYLERGDGPICLVLAPTRELAQQVQQVADDY-----GKCSRLKSTCIYGGA  203

Query  123  RATKGLMKGKHYYEVSCHDQG  143
                 +   +   E+     G
Sbjct  204  PKGPQIRDLERGVEICIATPG  224


>sp|Q2HBE7|DED1_CHAGB ATP-dependent RNA helicase DED1 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=DED1 PE=3 SV=1
Length=688

 Score = 332 bits (850),  Expect = 3e-102, Method: Composition-based stats.
 Identities = 107/434 (25%), Positives = 170/434 (39%), Gaps = 85/434 (20%)

Query  208  NGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIV  267
            NG+DL    +         LFP           +F +     P        +++  GY  
Sbjct  234  NGRDLMACAQTGSGKTGGFLFPIM-------HQSFTQGPSPIP--------AQSGGGY--  276

Query  268  KSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
                         +     P ALI+ P+REL  Q     ++F        +R  ++ GG 
Sbjct  277  -------------RQRKAYPTALILAPTRELVSQIYEEARKFA---YRSWVRPCVVYGGA  320

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM  387
                QL  +E G D++V TPGRL DL+  G+++L  +++LVLDEAD +L  G+   I R+
Sbjct  321  DIGSQLRQMERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRI  380

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
                 +      + Q ++ SAT    D++ L++  ++   ++ +    S  + +   V  
Sbjct  381  VQG--EDMPTTGQRQTLMFSATFP-RDIQMLAQDFLNDYVFLSVGRVGSTSENITQKVEY  437

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
            V                                          + K    +  +  H   
Sbjct  438  VE----------------------------------------DVDKRSVLLDILHTHAGG  457

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
              +IF  TK   D+L  + I Q          F    +HGDR   ER++ LE F+ G   
Sbjct  458  LTLIFVETKRMADSLSDFLINQ---------NFPATSIHGDRTQRERERALELFRNGKCP  508

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             L+ T VAARG+DI  V +VIN  LP +  +YVHRIGR GRA   G+A +        + 
Sbjct  509  ILVATAVAARGLDIPNVTHVINYDLPTDVDDYVHRIGRTGRAGNTGIATAFFNRGNRGIV  568

Query  628  YHVCSSRGKGCYNT  641
              +     +     
Sbjct  569  RELLDLLKEANQEV  582


 Score = 95.2 bits (235),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 46/113 (41%), Gaps = 7/113 (6%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  FS   +   +   +E   + +PT +Q  SIP+++ G D++  A+TGSGKTG F  P+
Sbjct  197  VLTFSNPPLDAHLLSNIELARYQIPTPVQKYSIPIVINGRDLMACAQTGSGKTGGFLFPI  256

Query  61   IQIVYETLKDQQEGKKGKT-------TIKTGASVLNKWQMNPYDRGSAFAIGS  106
            +   +         + G               +   +     Y+    FA  S
Sbjct  257  MHQSFTQGPSPIPAQSGGGYRQRKAYPTALILAPTRELVSQIYEEARKFAYRS  309


>sp|Q5VQL1|RH14_ORYSJ DEAD-box ATP-dependent RNA helicase 14 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os01g0172200 PE=2 
SV=1
Length=708

 Score = 332 bits (851),  Expect = 3e-102, Method: Composition-based stats.
 Identities = 107/427 (25%), Positives = 179/427 (42%), Gaps = 70/427 (16%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             +  G   EI   ++         ++           +         VA++K   G  + 
Sbjct  182  FQSTGFPPEILREVQQAGFSAPTPIQAQSWPIALRNRD--------IVAVAKTGSGKTLG  233

Query  269  SQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
                G   + + +    + P  L++ P+RELA Q  +  K+F +   + ++  + + GG 
Sbjct  234  YLIPGFILLKRLQHNSRDGPTVLVLSPTRELATQIQDEAKKFGR---SSRISSVCLYGGA  290

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM  387
                QL  LE G DIVV TPGRL+D++   +++L QV +LVLDEAD +L  G+   I ++
Sbjct  291  PKGPQLRDLERGADIVVATPGRLNDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKI  350

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVP--DTVHHVV  445
              Q+        + Q ++ +AT    +V+K++  ++  P  V++   D +    ++   V
Sbjct  351  VKQV------QPKRQTLMFTATWPK-EVRKIASDLLSNPVQVNIGNTDQLVANKSITQYV  403

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
              + P                               PE      +IL+         +  
Sbjct  404  DVITP-------------------------------PEKSRRLDQILRS--------QEP  424

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
              + IIFC TK  CD L +   +Q          +    +HGD+   ER   L  F+ G 
Sbjct  425  GSKIIIFCSTKRMCDQLARNLARQ----------YGASAIHGDKSQAERDSVLSEFRSGR  474

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
               L+ TDVAARG+DI  +  V+N   P   ++YVHRIGR GRA   G+A +    +  K
Sbjct  475  CPILVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSK  534

Query  626  VWYHVCS  632
                +  
Sbjct  535  YASDLVK  541


 Score = 102 bits (253),  Expect = 5e-21, Method: Composition-based stats.
 Identities = 63/370 (17%), Positives = 127/370 (34%), Gaps = 57/370 (15%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F   G  PEI + V++  +  PT IQA+S P+ L   D++  A+TGSGKT  + IP   
Sbjct  181  TFQSTGFPPEILREVQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIPGFI  240

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGC  122
            ++      Q   + G T +    S   +      D    F     G   +   V  + G 
Sbjct  241  LLKRL---QHNSRDGPTVL--VLSPTRELATQIQDEAKKF-----GRSSRISSVCLYGGA  290

Query  123  RATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNY  182
                 L   +   ++     G         + SL     +  +       +  +  F+  
Sbjct  291  PKGPQLRDLERGADIVVATPGRLNDILEMRRVSL----HQVSYLVLDEADRMLDMGFEPQ  346

Query  183  GEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNF  242
              +          +   +  + F+            P  ++      + +L N  ++ N 
Sbjct  347  IRKIVKQ------VQPKRQTLMFT---------ATWPKEVRK---IASDLLSNP-VQVNI  387

Query  243  GEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQT  302
            G             ++++  D      +     Q+ +++      K +I   ++ + +Q 
Sbjct  388  GNT----DQLVANKSITQYVDVITPPEKSRRLDQILRSQE--PGSKIIIFCSTKRMCDQL  441

Query  303  LNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGTPGRLDDLVSTGK  358
              N+ +        +     I G  +  ++ SVL         I+V T     D+ + G 
Sbjct  442  ARNLAR--------QYGASAIHGDKSQAERDSVLSEFRSGRCPILVAT-----DVAARG-  487

Query  359  LNLSQVRFLV  368
            L++  +R +V
Sbjct  488  LDIKDIRVVV  497


>sp|Q9P6U9|DED1_NEUCR ATP-dependent RNA helicase ded1 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=drh-9 PE=3 SV=1
Length=688

 Score = 331 bits (849),  Expect = 4e-102, Method: Composition-based stats.
 Identities = 100/381 (26%), Positives = 155/381 (41%), Gaps = 55/381 (14%)

Query  261  APDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRE  320
            +   +   S    +A     +     P ALI+ P+REL  Q  +  ++F        +R 
Sbjct  254  SQSFHTGPSPIPASAAGAYGRQRKAYPTALILAPTRELVSQIYDEARKFA---YRSWVRP  310

Query  321  LLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGY  380
             ++ GG     QL  +E G D++V TPGRL DL+  G+++L  +++LVLDEAD +L  G+
Sbjct  311  CVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGF  370

Query  381  SDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDT  440
               I R+     +        Q ++ SAT    D++ L+   +    ++ +    S  + 
Sbjct  371  EPQIRRIVEG--EDMPKVNDRQTLMFSATFP-RDIQILARDFLKDYIFLSVGRVGSTSEN  427

Query  441  VHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRA  500
            +   V  V                                          I K    +  
Sbjct  428  ITQKVEYVE----------------------------------------DIDKRSVLLDI  447

Query  501  IKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLER  560
            +  H     +IF  TK   D+L  + I Q          F    +HGDR   ER++ LE 
Sbjct  448  LHTHAGGLTLIFVETKRMADSLSDFLINQ---------NFPATSIHGDRTQRERERALEM  498

Query  561  FKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            F+ G    L+ T VAARG+DI  V +VIN  LP +  +YVHRIGR GRA   G+A +   
Sbjct  499  FRNGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFN  558

Query  621  TEKEKVWYHVCSSRGKGCYNT  641
                 V   +     +     
Sbjct  559  RGNRGVVRELLELLKEANQEV  579


 Score = 96.7 bits (239),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 27/114 (24%), Positives = 48/114 (42%), Gaps = 8/114 (7%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  FS   +   +   ++   + +PT +Q  SIP+++GG D++  A+TGSGKTG F  P+
Sbjct  193  VLTFSNPPLDNHLISNIQLARYNVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPI  252

Query  61   IQIVYETLKDQQEG--------KKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            +   + T               ++         +   +     YD    FA  S
Sbjct  253  LSQSFHTGPSPIPASAAGAYGRQRKAYPTALILAPTRELVSQIYDEARKFAYRS  306


>sp|Q7SBC6|DBP2_NEUCR ATP-dependent RNA helicase dbp2 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=drh-1 PE=3 SV=2
Length=562

 Score = 327 bits (839),  Expect = 5e-102, Method: Composition-based stats.
 Identities = 108/438 (25%), Positives = 184/438 (42%), Gaps = 67/438 (15%)

Query  218  IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQV  277
            +   +K Q       +++                    V +++   G  +         +
Sbjct  143  VMDEVKAQGFPAPTAIQSQGWPMALS--------GRDVVGIAETGSGKTLTYCLPAIVHI  194

Query  278  TQTKFLP--NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
                 L   + P  LI+ P+RELA Q    I +F K   + ++R   + GGV    Q+  
Sbjct  195  NAQPLLAPGDGPIVLILAPTRELAVQIQQEISKFGK---SSRIRNTCVYGGVPKGPQIRD  251

Query  336  LENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
            L  GV++ + TPGRL D++ +GK NL +V +LVLDEAD +L  G+   I ++  QI    
Sbjct  252  LSRGVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQI----  307

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPD-TVHHVVVPVNPKTDR  454
                  Q ++ SAT    +V+ L+   +     V++   D   +  +  +V  V+    R
Sbjct  308  --RPDRQTLMWSATWPK-EVRNLAADFLTDFIQVNIGSMDLAANHRITQIVEVVSESEKR  364

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
                                         M     KI++G            ++ +IF  
Sbjct  365  ---------------------------DRMIKHLEKIMEG--------RENQNKILIFTG  389

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
            TK   D++ ++  Q G         +  + +HGD++ +ER   L++FK G    ++ TDV
Sbjct  390  TKRVADDITRFLRQDG---------WPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDV  440

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            A+RGID+  + +V+N   P+  ++Y+HRIGR GRA   G AI+   T+  K    +    
Sbjct  441  ASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNSKQARELVGVL  500

Query  635  G--KGCYNTRLKEDGGCT  650
               K   + RL E    +
Sbjct  501  QEAKQQIDPRLAEMARYS  518


 Score = 100 bits (250),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 43/106 (41%), Gaps = 4/106 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E G    +   V+   +  PT IQ++  P+ L G DV+  AETGSGKT  + +P 
Sbjct  131  VETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA  190

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            I  +      Q     G   I    +   +  +      S F   S
Sbjct  191  IVHI----NAQPLLAPGDGPIVLILAPTRELAVQIQQEISKFGKSS  232


>sp|Q6BT27|FAL1_DEBHA ATP-dependent RNA helicase FAL1 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=FAL1 PE=3 SV=1
Length=399

 Score = 322 bits (824),  Expect = 5e-102, Method: Composition-based stats.
 Identities = 123/452 (27%), Positives = 191/452 (42%), Gaps = 75/452 (17%)

Query  210  KDLGLAFEIP--PHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY-I  266
             D  L F      ++K  A F +  LK   LK  +G   F+ P      A+ +   G   
Sbjct  8    VDNELEFSAKSTKNIKVHATFESMNLKTDLLKGIYGY-GFEAPSAIQSRAIMQIISGKDT  66

Query  267  VKSQHSGNAQ--------VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKL  318
            +    SG  +        +          +ALI+ P+RELA+Q  + +K    Y++   +
Sbjct  67   IAQAQSGTGKTATFSIGMLEVIDTKSKDCQALILSPTRELAQQIQSVVKHLGDYMN---V  123

Query  319  RELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQ  378
                 IGG    + +  L+ G  IV GTPGR+ D++    L    ++ ++LDEAD L+++
Sbjct  124  HTHACIGGTHVGEDIKKLQQGQQIVSGTPGRVVDMIKRRNLATRNIKMMILDEADELMTK  183

Query  379  GYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVP  438
            G+ + I  ++  +P        +QV+V SATL S +V +++ K    P  + +K +D   
Sbjct  184  GFKEQIYEIYRYLP------PGVQVVVVSATL-SREVLEVTGKFTTDPVKILVKRDDITL  236

Query  439  DTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAV  498
            + +    +    +                                         K +   
Sbjct  237  EGIKQYHIQCEKED---------------------------------------WKFDTLC  257

Query  499  RAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNL  558
                   + QA+IFC TK+  + L             K   F+ V +HGD K  ER   +
Sbjct  258  DLYDSLTITQAVIFCNTKVKVNWLTDQM---------KKANFTVVAMHGDMKQDERDSIM  308

Query  559  ERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
              F+ G+ R LI TDV ARGID+  V  VIN  LP +K+NYVHRIGR GR  R G+AI+L
Sbjct  309  NDFRTGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYVHRIGRSGRFGRKGVAINL  368

Query  619  VATEKEKVWYHVCSSRGKGCYNTRLKEDGGCT  650
            V  E       +     +  Y  R+KE     
Sbjct  369  VTKEDVDELRDI-----ERFYRIRIKEMPVNV  395


 Score = 93.7 bits (231),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 24/102 (24%), Positives = 44/102 (43%), Gaps = 0/102 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            A F  M +  ++ + +    +  P+ IQ+ +I  I+ G D +  A++G+GKT  FSI ++
Sbjct  26   ATFESMNLKTDLLKGIYGYGFEAPSAIQSRAIMQIISGKDTIAQAQSGTGKTATFSIGML  85

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
            +++    KD Q      T             +  Y      A
Sbjct  86   EVIDTKSKDCQALILSPTRELAQQIQSVVKHLGDYMNVHTHA  127


>sp|A1C6C4|DBP2_ASPCL ATP-dependent RNA helicase dbp2 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp2 PE=3 SV=1
Length=549

 Score = 327 bits (837),  Expect = 6e-102, Method: Composition-based stats.
 Identities = 107/433 (25%), Positives = 184/433 (42%), Gaps = 69/433 (16%)

Query  218  IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQV  277
            +   +K+Q       +++                    V +++   G  +         +
Sbjct  136  VLSEVKSQGFERPTAIQSQGWPMALS--------GRDVVGIAETGSGKTLTYCLPAIVHI  187

Query  278  TQTKFLP--NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
                 L   + P  L++ P+RELA Q    I +F K   + ++R   + GGV    Q+  
Sbjct  188  NAQPLLAPGDGPIVLVLAPTRELAVQIQTEITKFGK---SSRIRNTCVYGGVPKGPQIRD  244

Query  336  LENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
            L  GV++ + TPGRL D++  G+ NL +V +LVLDEAD +L  G+   I ++ +QI    
Sbjct  245  LSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQI----  300

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED-SVPDTVHHVVVPVNPKTDR  454
                  Q  + SAT    +V++L+   ++    V++   D S    +  +V         
Sbjct  301  --RPDRQTCMWSATWPK-EVRQLASDFLNDYIQVNIGSMDLSANHRITQIV---------  348

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
                                        E+ S+  K  K    +  I E + ++ +IF  
Sbjct  349  ----------------------------EVVSDFEKRDKMIKHLEKIMEDRSNKILIFTG  380

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
            TK   D + ++  Q G         +  + +HGD++  ER   L  FK G    ++ TDV
Sbjct  381  TKRIADEITRFLRQDG---------WPALSIHGDKQQQERDWVLNEFKAGKSPIMVATDV  431

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS--  632
            A+RGID+  + +V+N   P+  ++Y+HRIGR GRA   G AI+   T+  K    + +  
Sbjct  432  ASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNSKQARDLVTIL  491

Query  633  SRGKGCYNTRLKE  645
            +  K   + RL E
Sbjct  492  TEAKQQIDPRLAE  504


 Score = 101 bits (251),  Expect = 5e-21, Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 43/106 (41%), Gaps = 4/106 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E G    +   V+   +  PT IQ++  P+ L G DV+  AETGSGKT  + +P 
Sbjct  124  VETFDEAGFPQYVLSEVKSQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA  183

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            I  +      Q     G   I    +   +  +      + F   S
Sbjct  184  IVHI----NAQPLLAPGDGPIVLVLAPTRELAVQIQTEITKFGKSS  225


>sp|Q92841|DDX17_HUMAN Probable ATP-dependent RNA helicase DDX17 
OS=Homo sapiens OX=9606 GN=DDX17 PE=1 SV=2
Length=729

 Score = 331 bits (849),  Expect = 1e-101, Method: Composition-based stats.
 Identities = 112/460 (24%), Positives = 182/460 (40%), Gaps = 63/460 (14%)

Query  252  KDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP--NAPKALIVEPSRELAEQTLNNIKQF  309
                V +++   G  +         +    +L   + P  L++ P+RELA+Q       +
Sbjct  208  GRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDY  267

Query  310  KKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVL  369
             K     +L+   I GG     Q+  LE GV+I + TPGRL D + +GK NL +  +LVL
Sbjct  268  GKC---SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVL  324

Query  370  DEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWV  429
            DEAD +L  G+   I ++ +QI          Q ++ SAT    +V++L+E  +   T +
Sbjct  325  DEADRMLDMGFEPQIRKIVDQI------RPDRQTLMWSATWPK-EVRQLAEDFLRDYTQI  377

Query  430  DLKG-EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEA  488
            ++   E S    +  +V                                         E+
Sbjct  378  NVGNLELSANHNILQIVDVCM-------------------------------------ES  400

Query  489  IKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGD  548
             K  K    +  I   K ++ IIF  TK  CD+L +   + G         +  +C+HGD
Sbjct  401  EKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDG---------WPAMCIHGD  451

Query  549  RKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
            +   ER   L  F+ G    LI TDVA+RG+D+  V +VIN   P+  ++YVHRIGR  R
Sbjct  452  KSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTAR  511

Query  609  AERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNC  668
            +   G A +       K    +     +   N  +       + +               
Sbjct  512  STNKGTAYTFFTPGNLKQARELIKVLEEA--NQAINPKLMQLVDHRGGGGGGGGRSRYRT  569

Query  669  TISQVEPDI--KVPVDEFDGKVTYGQKRAAGGGSYKGHVD  706
            T S   P++  +   D     V  G +R +     +   D
Sbjct  570  TSSANNPNLMYQDECDRRLRGVKDGGRRDSASYRDRSETD  609


 Score = 95.6 bits (236),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 29/141 (21%), Positives = 51/141 (36%), Gaps = 9/141 (6%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            AF        +   + +  +  PT IQ +  PL L G D++  A+TGSGKT A+ +P I 
Sbjct  172  AFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIV  231

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGC  122
             +      Q   ++G   I    +   +           +     G C + +    + G 
Sbjct  232  HI----NHQPYLERGDGPICLVLAPTRELAQQVQQVADDY-----GKCSRLKSTCIYGGA  282

Query  123  RATKGLMKGKHYYEVSCHDQG  143
                 +   +   E+     G
Sbjct  283  PKGPQIRDLERGVEICIATPG  303


>sp|A7EJY3|DED1_SCLS1 ATP-dependent RNA helicase ded1 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=ded1 PE=3 SV=1
Length=678

 Score = 330 bits (845),  Expect = 1e-101, Method: Composition-based stats.
 Identities = 98/375 (26%), Positives = 155/375 (41%), Gaps = 55/375 (15%)

Query  266  IVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
               S    NA  +  +     P +LI+ P+REL  Q  +  ++F        +R  ++ G
Sbjct  251  TGPSPIPANAAGSFGRTRKAYPTSLILAPTRELVSQIFDESRKFA---YRSWVRPCVVYG  307

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            G     QL  +E G D++V TPGRL DL+  G+++L  +++LVLDEAD +L  G+   I 
Sbjct  308  GADIGSQLRQMERGCDLLVATPGRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQIR  367

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
            R+     +     +  Q ++ SAT    D++ L+   +    ++ +    S  + +   V
Sbjct  368  RIVEG--EDMPGVQNRQTLMFSATFP-RDIQMLARDFLKDYVFLSVGRVGSTSENITQKV  424

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
              V                                          I K    +  +  H 
Sbjct  425  EYVE----------------------------------------DIDKRSVLLDILHTHG  444

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
                +IF  TK   D+L  + I Q          F    +HGDR   ER++ LE F+ G 
Sbjct  445  AGLTLIFVETKRMADSLSDFLINQ---------NFPATSIHGDRTQRERERALEMFRNGR  495

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
               L+ T VAARG+DI  V +V+N  LP +  +YVHRIGR GRA   G++ +        
Sbjct  496  CPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGISTAFFNRGNRG  555

Query  626  VWYHVCSSRGKGCYN  640
            V   +     +    
Sbjct  556  VVRDLIELLKEANQE  570


 Score = 98.7 bits (244),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 26/114 (23%), Positives = 49/114 (43%), Gaps = 8/114 (7%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F+   +   + + +E   + +PT +Q  SIP+++GG D++  A+TGSGKTG F  P+
Sbjct  185  VLKFTNPPLDDHLIKNIELAHYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPI  244

Query  61   IQIVYETLKDQQEGK--------KGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            +   ++T                +         +   +     +D    FA  S
Sbjct  245  LSQAFQTGPSPIPANAAGSFGRTRKAYPTSLILAPTRELVSQIFDESRKFAYRS  298


>sp|P42305|DBPA_BACSU ATP-dependent RNA helicase DbpA OS=Bacillus 
subtilis (strain 168) OX=224308 GN=dbpA PE=1 SV=2
Length=479

 Score = 323 bits (828),  Expect = 2e-101, Method: Composition-based stats.
 Identities = 115/501 (23%), Positives = 201/501 (40%), Gaps = 78/501 (16%)

Query  203  VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAP  262
            +   KN +   ++ +I   ++         ++ + +      ++         V  S+  
Sbjct  1    MSHFKNYQ---ISHDILRALEGLGYTEPTKVQQSVIPAALERKD--------LVVKSQTG  49

Query  263  DGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
             G        G        +  N P+ALI+ P+RELA Q   +I    ++    +++   
Sbjct  50   SGKTASF---GIPLCELANWDENKPQALILTPTRELAVQVKEDITNIGRF---KRIKATA  103

Query  323  IIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD  382
            + G  +   Q + L+    IVVGTPGR+ D +  G L L ++ +LV+DEAD +L+ G+ +
Sbjct  104  VFGKSSFDKQKAELKQKSHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIE  163

Query  383  FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH  442
             +  +   +P           ++ SATL   D++KLS + M  P  +++K        + 
Sbjct  164  QVEAIIKHLPT------ERTTMLFSATLP-QDIEKLSRQYMQNPEHIEVKAAGLTTRNIE  216

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
            H V+ V  +                                         K       + 
Sbjct  217  HAVIQVREEN----------------------------------------KFSLLKDVLM  236

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
                D  IIFCRTK   + L       G         + C  +HG     +R   +  FK
Sbjct  237  TENPDSCIIFCRTKEHVNQLTDELDDLG---------YPCDKIHGGMIQEDRFDVMNEFK  287

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            +G+ R+L+ TDVAARGIDI  +  VIN  LP EK++YVHR GR GRA   G AIS V   
Sbjct  288  RGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAF  347

Query  623  KEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVD  682
            +++    +    G      +++      +   + + L+++ +      S+ +   ++  D
Sbjct  348  EKRFLADIEEYIG--FEIQKIEAPSQEEVARKKPEFLAKLNDRPE---SKKDKSEELNKD  402

Query  683  EFDGKVTYGQKRAAGGGSYKG  703
                    G+K+      + G
Sbjct  403  IMKLYFNGGKKKKIRAVDFVG  423


 Score = 85.2 bits (209),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 49/317 (15%), Positives = 98/317 (31%), Gaps = 52/317 (16%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M+ F    +  +I +A+E + +  PT +Q   IP  L   D+++ ++TGSGKT +F IP+
Sbjct  1    MSHFKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPL  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI-GSDGLCCQSREVKEW  119
             ++        Q      T         +   +  + R  A A+ G      Q  E+K+ 
Sbjct  61   CELANWDENKPQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQKAELKQK  120

Query  120  -HGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQ  178
             H    T     G+    +      L                D+  +       +  N  
Sbjct  121  SHIVVGTP----GRVLDHIEKGTLPL----------------DRLSYLVIDEADEMLNMG  160

Query  179  FDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAEL  238
            F    E    H                              P  +   LF A + ++ E 
Sbjct  161  FIEQVEAIIKH-----------------------------LPTERTTMLFSATLPQDIEK  191

Query  239  KFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSRE  297
                  +  +          ++  +  +++ +      + +   +   P   +I   ++E
Sbjct  192  LSRQYMQNPEHIEVKAAGLTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKE  251

Query  298  LAEQTLNNIKQFKKYID  314
               Q  + +       D
Sbjct  252  HVNQLTDELDDLGYPCD  268


>sp|A6SEH9|DED1_BOTFB ATP-dependent RNA helicase ded1 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=ded1 PE=3 SV=1
Length=683

 Score = 330 bits (845),  Expect = 2e-101, Method: Composition-based stats.
 Identities = 98/375 (26%), Positives = 155/375 (41%), Gaps = 55/375 (15%)

Query  266  IVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
               S    NA  +  +     P +LI+ P+REL  Q  +  ++F        +R  ++ G
Sbjct  251  TGPSPVPANAAGSFGRTRKAYPTSLILAPTRELVSQIYDESRKFA---YRSWVRPCVVYG  307

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            G     QL  +E G D++V TPGRL DL+  G+++L  +++LVLDEAD +L  G+   I 
Sbjct  308  GADIGSQLRQMERGCDLLVATPGRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQIR  367

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
            R+     +     +  Q ++ SAT    D++ L+   +    ++ +    S  + +   V
Sbjct  368  RIVEG--EDMPGVQNRQTLMFSATFP-RDIQMLARDFLKDYVFLSVGRVGSTSENITQKV  424

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
              V                                          I K    +  +  H 
Sbjct  425  EYVE----------------------------------------DIDKRSVLLDILHTHG  444

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
                +IF  TK   D+L  + I Q          F    +HGDR   ER++ LE F+ G 
Sbjct  445  AGLTLIFVETKRMADSLSDFLINQ---------NFPATSIHGDRTQRERERALEMFRNGR  495

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
               L+ T VAARG+DI  V +V+N  LP +  +YVHRIGR GRA   G++ +        
Sbjct  496  CPILVATAVAARGLDIPNVKHVVNYDLPTDIDDYVHRIGRTGRAGNTGISTAFFNRGNRG  555

Query  626  VWYHVCSSRGKGCYN  640
            V   +     +    
Sbjct  556  VCRDLIELLKEANQE  570


 Score = 100 bits (248),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 27/114 (24%), Positives = 49/114 (43%), Gaps = 8/114 (7%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F+   +   + + +E   + +PT +Q  SIP+++GG D++  A+TGSGKTG F  P+
Sbjct  185  VLKFTNPPLDDHLIKNIELAHYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPI  244

Query  61   IQIVYETLKDQQEGK--------KGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            +   ++T                +         +   +     YD    FA  S
Sbjct  245  LSQAFQTGPSPVPANAAGSFGRTRKAYPTSLILAPTRELVSQIYDESRKFAYRS  298


>sp|A4QSS5|DBP2_PYRO7 ATP-dependent RNA helicase DBP2 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=DBP2 PE=3 SV=1
Length=548

 Score = 325 bits (834),  Expect = 2e-101, Method: Composition-based stats.
 Identities = 102/426 (24%), Positives = 175/426 (41%), Gaps = 65/426 (15%)

Query  218  IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQV  277
            +   +K Q       +++                    V +++   G  +         +
Sbjct  136  VMDEVKAQGFPAPTAIQSQGWPMALS--------GRDVVGIAETGSGKTLTYCLPAIVHI  187

Query  278  TQTKFLP--NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
                 L   + P  LI+ P+RELA Q    I +F K   + ++R   + GGV    Q+  
Sbjct  188  NAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGK---SSRIRNTCVYGGVPKGPQIRD  244

Query  336  LENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
            L  GV++ + TPGRL D++ +GK NL +V +LVLDEAD +L  G+   I ++  QI    
Sbjct  245  LSRGVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQI----  300

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED-SVPDTVHHVVVPVNPKTDR  454
                  Q ++ SAT    +V+ ++   +     V++   D S    +  +V  V+     
Sbjct  301  --RPDRQTLMWSATWPK-EVRNMAADFLQDFIQVNIGSLDLSANHRITQIVEVVSE----  353

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
                                           SE    +          +   ++ +IF  
Sbjct  354  -------------------------------SEKRDRMIRHMEKVMDGKDSKNKILIFVG  382

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
            TK   D + ++  Q G         +  + +HGD++ +ER   L++FK G    ++ TDV
Sbjct  383  TKRVADEITRFLRQDG---------WPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDV  433

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            A+RGID+  + +V+N   P+  ++Y+HRIGR GRA   G AI+   TE  K    +    
Sbjct  434  ASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENSKQARDLLGVL  493

Query  635  GKGCYN  640
             +    
Sbjct  494  QEAKQE  499


 Score = 100 bits (250),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 43/106 (41%), Gaps = 4/106 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E G    +   V+   +  PT IQ++  P+ L G DV+  AETGSGKT  + +P 
Sbjct  124  VETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA  183

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            I  +      Q     G   I    +   +  +      S F   S
Sbjct  184  IVHI----NAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSS  225


>sp|P34580|DDX47_CAEEL Putative ATP-dependent RNA helicase T26G10.1 
OS=Caenorhabditis elegans OX=6239 GN=T26G10.1 PE=3 SV=1
Length=489

 Score = 323 bits (828),  Expect = 2e-101, Method: Composition-based stats.
 Identities = 115/476 (24%), Positives = 179/476 (38%), Gaps = 83/476 (17%)

Query  228  FPACVLKNAELKF--NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFL--  283
            F    +           G  +     +       +  D   +    SG         L  
Sbjct  46   FAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQS  105

Query  284  ----PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
                P A   L++ P+RELA Q     +          L   +I+GGV    Q   L   
Sbjct  106  LLDHPQAFFCLVLTPTRELAFQIGQQFEALG---SGIGLIAAVIVGGVDMAAQAMALARR  162

Query  340  VDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
              I+V TPGRL D + +T   NL  ++FL++DEAD +L+  +   ++++   IP      
Sbjct  163  PHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIP------  216

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER  458
            +  +  + SAT+    V KL    +  P  V +       D +    + V  K       
Sbjct  217  RERRTYLFSATMTK-KVSKLERASLRDPARVSVSSRYKTVDNLKQHYIFVPNK-------  268

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
                                              K  Y V  + EH  + AI+FC T   
Sbjct  269  ---------------------------------YKETYLVYLLNEHAGNSAIVFCATCAT  295

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
               +     Q G            V LHG     +R  +L +FK      L+CTDVAARG
Sbjct  296  TMQIAVMLRQLG---------MQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTDVAARG  346

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGC  638
            +DI  V  VIN  +P + ++YVHR+GR  RA R G+AI++V     + +  + ++ GK  
Sbjct  347  LDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQKIEANLGKKL  406

Query  639  YNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKR  694
               +  E        NE+ +L E          +   + ++ + E D K   G+KR
Sbjct  407  DEYKCVE--------NEVMVLVE-------RTQEATENARIEMKEMDEKKKSGKKR  447


 Score = 100 bits (250),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 9/110 (8%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +F+E+GV   +  A + + W+ P+ IQ  ++P  L G DV+  AETGSGKTGAF+IPV+
Sbjct  44   KSFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVL  103

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
            Q + +           +       +   +       +  A   G   +  
Sbjct  104  QSLLDH---------PQAFFCLVLTPTRELAFQIGQQFEALGSGIGLIAA  144


>sp|Q6CLR3|DED1_KLULA ATP-dependent RNA helicase DED1 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DED1 PE=3 SV=1
Length=627

 Score = 327 bits (839),  Expect = 2e-101, Method: Composition-based stats.
 Identities = 93/355 (26%), Positives = 154/355 (43%), Gaps = 55/355 (15%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P A+I+ P+RELA Q  +  K   K+     ++ +++ GG +  +Q+  +  G +++V T
Sbjct  243  PTAVILAPTRELATQIYDEAK---KFTYRSWVKPMVVYGGASIDNQIKQMRYGCNLLVAT  299

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL DL+    ++L+ V++LVLDEAD +L  G+   I R+              Q ++ 
Sbjct  300  PGRLTDLLERRYISLANVKYLVLDEADRMLDMGFEPQIRRIVEG--SDMPSVDNRQTLMF  357

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT  S +++ L+   +    ++ +    S  + +   ++ V                  
Sbjct  358  SATFPS-EIQHLASDFLKDYVFLSVGRVGSTSENITQKILYVE-----------------  399

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                                      K +  +  +        +IF  TK   D+L  + 
Sbjct  400  -----------------------DFDKNDTLLDLLAASNEGLTLIFVETKRAADSLTDFL  436

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
            I +G         F    +HGDR   ER++ L  FK G    L+ T VAARG+DI  V +
Sbjct  437  IMEG---------FKATAIHGDRTQGERERALSAFKTGRATILVATAVAARGLDIPNVTH  487

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
            VIN  LP++  +YVHRIGR GRA   G+A +      + V   + S   +     
Sbjct  488  VINFDLPNDIDDYVHRIGRTGRAGNTGVATTFFNRGNKNVAKELVSLLSEANQEV  542


 Score = 103 bits (256),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 47/112 (42%), Gaps = 6/112 (5%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++ F    + P +   ++   +  PT +Q  S+P++  G D++  A+TGSGKTG F  PV
Sbjct  158  ISEFHSPPLDPLLLDNIKLARFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPV  217

Query  61   IQIVYETLKDQQEGKKGKTTIKT------GASVLNKWQMNPYDRGSAFAIGS  106
            +   + +         G + IK         +   +     YD    F   S
Sbjct  218  LSESFSSGPASTPEAAGNSYIKKVYPTAVILAPTRELATQIYDEAKKFTYRS  269


>sp|Q5L3G9|CSHA_GEOKA DEAD-box ATP-dependent RNA helicase CshA 
OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=cshA 
PE=3 SV=1
Length=467

 Score = 322 bits (826),  Expect = 3e-101, Method: Composition-based stats.
 Identities = 104/434 (24%), Positives = 189/434 (44%), Gaps = 70/434 (16%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             ++LGL+ E+   ++         ++   +  +   ++         +  ++   G    
Sbjct  4    FQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKD--------VIGQAQTGTGKTAA  55

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
                G   V +     +A +AL+V P+RELA Q    + +        ++R L I GG  
Sbjct  56   F---GIPIVEKVNVKNSAVQALVVAPTRELAIQVSEELYKIGA---VKRVRVLPIYGGQD  109

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
               Q+  L+    ++VGTPGR+ D ++ G L L  V  +VLDEAD +L+ G+ + I  + 
Sbjct  110  IERQIRALKKHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAIL  169

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
            + +P         Q ++ SAT+    +++++E+ M+ P  V +K ++     +    + V
Sbjct  170  SHVPA------ERQTLLFSATMPDP-IRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEV  222

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
            + K                                         K +   R +     + 
Sbjct  223  HEKK----------------------------------------KFDILTRLLDIQAPEL  242

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
            AI+F RTK   D L +    +G         ++   +HGD    +R   L +FK+G +  
Sbjct  243  AIVFGRTKRRVDELAEALNLRG---------YAAEGIHGDLSQAKRLSVLRKFKEGAIEI  293

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            L+ TDVAARG+DI GV +V N  +P + ++YVHRIGR GRA + G+A++ V   +    +
Sbjct  294  LVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLH  353

Query  629  HVCSSRGKGCYNTR  642
            H+  +  +     +
Sbjct  354  HIERTTKRKMERMK  367


 Score = 106 bits (265),  Expect = 5e-23, Method: Composition-based stats.
 Identities = 30/104 (29%), Positives = 48/104 (46%), Gaps = 9/104 (9%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M  F E+G+  E+ +A+E M +   T IQA++IPL L   DV+  A+TG+GKT AF IP+
Sbjct  1    MTTFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPI  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            ++ V           K         +   +  +   +       
Sbjct  61   VEKV---------NVKNSAVQALVVAPTRELAIQVSEELYKIGA  95


>sp|A3GFV3|FAL1_PICST ATP-dependent RNA helicase FAL1 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=FAL1 PE=3 SV=1
Length=399

 Score = 320 bits (819),  Expect = 3e-101, Method: Composition-based stats.
 Identities = 118/445 (27%), Positives = 183/445 (41%), Gaps = 73/445 (16%)

Query  211  DLGLAF--EIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYI  266
            D  L F  +   ++K  A F +  LK   LK  + +G E          + +    D   
Sbjct  9    DNELEFSHKSTKNVKVHATFESMNLKPDLLKGIYGYGFEAPSAIQSRAIMQIINGRDTIA  68

Query  267  VKSQHSGNA------QVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRE  320
                 +G         +          +ALI+ P+RELA Q  N +K    Y++   +  
Sbjct  69   QAQSGTGKTATFSIGMLQAIDTNAKDCQALILSPTRELAVQIQNVVKHLGDYMN---IHT  125

Query  321  LLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGY  380
               IGG    D +  L+ G  IV GTPGR+ D+V   +L+   ++ L+LDEAD L ++G+
Sbjct  126  HACIGGTHVGDDIKKLKQGQQIVSGTPGRVVDMVKRQQLSTRNIKMLILDEADELFTKGF  185

Query  381  SDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDT  440
             + I  ++  +P              SATL S +V +++ K    P  + +K +    + 
Sbjct  186  KEQIYEVYKYLPPSVQVVVV------SATL-SREVLEMTNKFTTDPVKILVKRDQITLEG  238

Query  441  VHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRA  500
            +    V    +                                         K +     
Sbjct  239  IKQYHVQCEKED---------------------------------------WKFDTLCDL  259

Query  501  IKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLER  560
                 + QA+IFC TK+  + L     +Q          F+ V +HGD K  ER   +  
Sbjct  260  YDNLTITQAVIFCNTKLKVNWLTDQMRKQ---------NFTVVSMHGDMKQDERDSIMND  310

Query  561  FKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            F+ G+ R LI TDV ARGID+  V  VIN  LP +K+NY+HRIGR GR  R G+AI+L+ 
Sbjct  311  FRTGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGVAINLIT  370

Query  621  TEKEKVWYHVCSSRGKGCYNTRLKE  645
             E                Y+T+++E
Sbjct  371  KEDVATLRDFEK-----YYSTKIRE  390


 Score = 99.0 bits (245),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 24/102 (24%), Positives = 44/102 (43%), Gaps = 9/102 (9%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            A F  M + P++ + +    +  P+ IQ+ +I  I+ G D +  A++G+GKT  FSI ++
Sbjct  26   ATFESMNLKPDLLKGIYGYGFEAPSAIQSRAIMQIINGRDTIAQAQSGTGKTATFSIGML  85

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
            Q +    KD Q             S   +  +   +      
Sbjct  86   QAIDTNAKDCQ---------ALILSPTRELAVQIQNVVKHLG  118


>sp|Q2H720|DBP2_CHAGB ATP-dependent RNA helicase DBP2 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=DBP2 PE=3 SV=1
Length=562

 Score = 325 bits (832),  Expect = 5e-101, Method: Composition-based stats.
 Identities = 103/422 (24%), Positives = 177/422 (42%), Gaps = 65/422 (15%)

Query  218  IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQV  277
            +   +K Q       +++                    V +++   G  +         +
Sbjct  147  VMDEVKAQGFPAPTAIQSQGWPMALS--------GRDVVGIAETGSGKTLTYCLPAIVHI  198

Query  278  TQTKFLP--NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
                 L   + P  L++ P+RELA Q    I +F K   + ++R   + GGV    Q   
Sbjct  199  NAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGK---SSRIRNTCVYGGVPKGPQTRD  255

Query  336  LENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
            L  GV++ + TPGRL D++ +G+ NL +V +LVLDEAD +L  G+   I ++  QI    
Sbjct  256  LSRGVEVCIATPGRLIDMLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQI----  311

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPD-TVHHVVVPVNPKTDR  454
                  Q  + SAT    +V+ L+   +     V++   D   +  +  VV  VN    R
Sbjct  312  --RPDRQTCMWSATWPK-EVRALASDFLTDFIQVNIGSMDLAANHRITQVVEVVNESEKR  368

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
                                        +M     KI++         +   ++ +IF  
Sbjct  369  ---------------------------DKMIKHLEKIMED--------KESQNKILIFTG  393

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
            TK   D + ++  Q G         +  + +HGD++ +ER   L++FK G    ++ TDV
Sbjct  394  TKRVADEITRFLRQDG---------WPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDV  444

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            A+RGID+  + +V+N   P+  ++Y+HRIGR GRA   G AI+   T+  K    +    
Sbjct  445  ASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNSKQARDLVGVL  504

Query  635  GK  636
             +
Sbjct  505  QE  506


 Score = 100 bits (248),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 43/106 (41%), Gaps = 4/106 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E G    +   V+   +  PT IQ++  P+ L G DV+  AETGSGKT  + +P 
Sbjct  135  VETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA  194

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            I  +      Q     G   I    +   +  +      + F   S
Sbjct  195  IVHI----NAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSS  236


>sp|Q8TFK8|DED1_CANGA ATP-dependent RNA helicase DED1 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DED1 PE=3 SV=1
Length=617

 Score = 326 bits (836),  Expect = 5e-101, Method: Composition-based stats.
 Identities = 94/354 (27%), Positives = 154/354 (44%), Gaps = 55/354 (16%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P A+++ P+RELA Q  +  K   K+     ++  ++ GG    +Q+  +++G D++V T
Sbjct  229  PTAVVMAPTRELATQIFDEAK---KFCYRSWVKPCVVYGGAPIGNQMREMDHGCDLLVAT  285

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL+DL+  GK++LS V++LVLDEAD +L  G+   I  +              Q ++ 
Sbjct  286  PGRLNDLLERGKVSLSNVKYLVLDEADRMLDMGFEPQIRHIVEDCD--MPPTGERQTLMF  343

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT    D++ L+   +H   ++ +    S  + +   ++ V  +               
Sbjct  344  SATFP-HDIQHLARDFLHDYIFLSVGRVGSTSENITQRILYVENRD--------------  388

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                                      K    +  +     +  +IF  TK   D L  + 
Sbjct  389  --------------------------KNSALLDLLAASNDNLTLIFVETKRMADQLTDFL  422

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
            I Q          FS   +HGDR   ER++ L  F+ G    L+ T VAARG+DI  V +
Sbjct  423  IMQ---------NFSATAIHGDRSQAERERALAAFRSGRANILVATAVAARGLDIPNVTH  473

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYN  640
            VIN  LP +  +YVHRIGR GRA   G+A +    +   +   +     +    
Sbjct  474  VINYDLPSDVDDYVHRIGRTGRAGNTGVATAFFNRDNNNIVKGLYEILEEANQE  527


 Score = 96.4 bits (238),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 31/148 (21%), Positives = 58/148 (39%), Gaps = 17/148 (11%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F+   +   + + ++   +  PT +Q  S+P++  G D++  A+TGSGKTG F  PV
Sbjct  144  ITEFTSPPLDSLLLENIKLARFTKPTPVQKYSVPIVSKGRDLMACAQTGSGKTGGFLFPV  203

Query  61   IQIVYETLKDQQEGKKGKT------TIKTGASVLNKWQMNPYDRGSAFAIGS--------  106
            +   + T   ++    G +            +   +     +D    F   S        
Sbjct  204  LSESFLTGPAEKAANDGYSYQRKAFPTAVVMAPTRELATQIFDEAKKFCYRSWVKPCVVY  263

Query  107  DGLCCQSREVKEWHGC---RATKGLMKG  131
             G    ++  +  HGC    AT G +  
Sbjct  264  GGAPIGNQMREMDHGCDLLVATPGRLND  291


>sp|Q4IF76|DBP2_GIBZE ATP-dependent RNA helicase DBP2 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=DBP2 PE=3 SV=2
Length=554

 Score = 324 bits (831),  Expect = 6e-101, Method: Composition-based stats.
 Identities = 107/424 (25%), Positives = 187/424 (44%), Gaps = 71/424 (17%)

Query  218  IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDG----YIVKSQHSG  273
            +   +K Q       +++                    V +++   G    Y + S    
Sbjct  147  VMDEVKAQGFPAPTAIQSQGWPMALS--------GRDVVGIAETGSGKTLTYCLPSIVHI  198

Query  274  NAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQL  333
            NAQ        + P  L++ P+RELA Q    +K+F +   + ++R   + GGV    Q+
Sbjct  199  NAQPLLAPG--DGPIVLVLAPTRELAVQIQEEMKKFGR---SSRIRNTCVYGGVPKGPQI  253

Query  334  SVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ  393
              L  GV++ + TPGRL D++  GK NL +V +LVLDEAD +L  G+   I ++  QI  
Sbjct  254  RDLSRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQI--  311

Query  394  VTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG-EDSVPDTVHHVVVPVNPKT  452
                    Q ++ SAT    +V+ L+   +     V++   E +    +  +V       
Sbjct  312  ----RPDRQTLMWSATWPK-EVRALASDFLQDFIQVNIGSMELAANHRITQIV-------  359

Query  453  DRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF  512
                                          E+ +E  K  +    +  + E+K ++ +IF
Sbjct  360  ------------------------------EVVTEMEKRDRMIKHMEKVMENKENKILIF  389

Query  513  CRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICT  572
              TK   D + ++  Q G         +  + +HGD++ +ER   L++FK G    ++ T
Sbjct  390  VGTKRVADEITRFLRQDG---------WPALSIHGDKQQNERDWVLDQFKTGKSPIMVAT  440

Query  573  DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
            DVA+RGID+  + +V+N   P+  ++Y+HRIGR GRA  MG AI+L  T+ +K    + +
Sbjct  441  DVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAMGTAITLFTTDNQKQARDLVN  500

Query  633  SRGK  636
               +
Sbjct  501  VLQE  504


 Score = 97.9 bits (242),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 43/106 (41%), Gaps = 4/106 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E G    +   V+   +  PT IQ++  P+ L G DV+  AETGSGKT  + +P 
Sbjct  135  VETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPS  194

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            I  +      Q     G   I    +   +  +   +    F   S
Sbjct  195  IVHI----NAQPLLAPGDGPIVLVLAPTRELAVQIQEEMKKFGRSS  236


>sp|Q4I7K4|DED1_GIBZE ATP-dependent RNA helicase DED1 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=DED1 PE=3 SV=1
Length=675

 Score = 328 bits (840),  Expect = 6e-101, Method: Composition-based stats.
 Identities = 98/374 (26%), Positives = 154/374 (41%), Gaps = 55/374 (15%)

Query  268  KSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
             S    NA     +     P +LI+ P+REL  Q  +  ++F        +R  ++ GG 
Sbjct  253  PSAVPANAAGQFGRQRKAYPTSLILAPTRELVSQIFDESRKFA---YRSWVRPCVVYGGA  309

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM  387
                QL  +E G D++V TPGRL DL+  G+++L  +++LVLDEAD +L  G+   I R+
Sbjct  310  DIGSQLRQIERGCDLLVATPGRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQIRRI  369

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
                 +     +  Q ++ SAT    D++ L+   +    ++ +    S  + +   V  
Sbjct  370  VEG--EDMPQVQDRQTLMFSATFP-RDIQMLARDFLKDYIFLSVGRVGSTSENITQKVEY  426

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
            V                                          + K    +  +  H   
Sbjct  427  VE----------------------------------------DVDKRSVLLDILHSHANG  446

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
              +IF  TK   D+L  + I Q          F    +HGDR   ER++ LE F+ G   
Sbjct  447  LTLIFVETKRMADSLSDFLINQ---------NFPATSIHGDRTQRERERALEFFRNGRCP  497

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             L+ T VAARG+DI  V +VIN  LP +  +YVHRIGR GRA   G+A +        + 
Sbjct  498  ILVATAVAARGLDIPHVTHVINYDLPTDVDDYVHRIGRTGRAGNTGIATAFFNRGNRGIV  557

Query  628  YHVCSSRGKGCYNT  641
              +     +     
Sbjct  558  RELMDLLKEANQEV  571


 Score = 91.7 bits (226),  Expect = 8e-18, Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 8/111 (7%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+   +   + + +E   + +PT +Q  SIP++ GG D++  A+TGSGKTG F  P++  
Sbjct  188  FTTPPLDEHLCRNIELAHYKVPTPVQKYSIPIVSGGRDLMACAQTGSGKTGGFLFPILSQ  247

Query  64   VYETLKDQ-------QEGKKGKT-TIKTGASVLNKWQMNPYDRGSAFAIGS  106
             +             Q G++ K        +   +     +D    FA  S
Sbjct  248  AFINGPSAVPANAAGQFGRQRKAYPTSLILAPTRELVSQIFDESRKFAYRS  298


>sp|Q1DJF0|DED1_COCIM ATP-dependent RNA helicase DED1 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DED1 PE=3 SV=2
Length=665

 Score = 327 bits (839),  Expect = 8e-101, Method: Composition-based stats.
 Identities = 102/389 (26%), Positives = 161/389 (41%), Gaps = 57/389 (15%)

Query  254  GFVALSKA-PDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKY  312
             F  LS+A  +G       + N Q +  +     P +LI+ P+REL  Q  +  ++F   
Sbjct  236  LFPILSQAFKNGPSAVPTQNAN-QFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFA--  292

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
                 +R  ++ GG     QL  +E G D++V TPGRL DL+  G+++L  +++LVLDEA
Sbjct  293  -YRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEA  351

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D +L  G+   I R+     +        Q ++ SAT    D++ L+   +    ++ + 
Sbjct  352  DRMLDMGFEPQIRRIVEG--EDMPPVNGRQTLMFSATFP-RDIQMLARDFLKDYVFLSVG  408

Query  433  GEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKIL  492
               S  + +   V  V     R                                      
Sbjct  409  RVGSTSENITQKVEYVEDADKR--------------------------------------  430

Query  493  KGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPH  552
                 +  +  H     +IF  TK   D+L ++ I Q          F    +HGDR   
Sbjct  431  --SVLLDILHTHGTGLTLIFVETKRMADSLSEFLINQ---------NFPATAIHGDRTQR  479

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM  612
            ER++ LE F+ G    L+ T VAARG+DI  V +V+N  LP +  +YVHRIGR GRA   
Sbjct  480  ERERALEYFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNT  539

Query  613  GLAISLVATEKEKVWYHVCSSRGKGCYNT  641
            GL+ +        V   +     +     
Sbjct  540  GLSTAFFNRGNRGVVRDLIELLKEAHQEV  568


 Score = 98.3 bits (243),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 25/116 (22%), Positives = 47/116 (41%), Gaps = 10/116 (9%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F+   +   +   ++   +  PT +Q  SIP+++GG D++  A+TGSGKTG F  P+
Sbjct  180  VTTFTNPPLDDHLISNIKLATYKTPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPI  239

Query  61   IQIVYETLKDQQEG----------KKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            +   ++                  ++         +   +     YD    FA  S
Sbjct  240  LSQAFKNGPSAVPTQNANQFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRS  295


>sp|Q2UGK3|DED1_ASPOR ATP-dependent RNA helicase ded1 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=ded1 
PE=3 SV=1
Length=675

 Score = 327 bits (839),  Expect = 9e-101, Method: Composition-based stats.
 Identities = 100/388 (26%), Positives = 161/388 (41%), Gaps = 54/388 (14%)

Query  254  GFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI  313
             F  LS+A       +    + Q +  +     P +LI+ P+REL  Q  +  ++F    
Sbjct  241  LFPILSQAFQNGPSPTPAPASGQFSYGRQRKAYPTSLILAPTRELVSQIFDEARKFA---  297

Query  314  DNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEAD  373
                +R  ++ GG     QL  +E G D++V TPGRL DL+  G+++L  +++L+LDEAD
Sbjct  298  YRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEAD  357

Query  374  GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG  433
             +L  G+   I R+     +        Q ++ SAT    D++ L+   +    ++ +  
Sbjct  358  RMLDMGFEPQIRRIVEG--EDMPHVNDRQTLMFSATFP-RDIQMLARDFLKDYVFLSVGR  414

Query  434  EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK  493
              S  + +   V  V     R         +  D +H    +                  
Sbjct  415  VGSTSENITQKVEYVEDHDKR--------SVLLDILHTHGTSGL----------------  450

Query  494  GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
                            +IF  TK   D+L  + + Q         +F    +HGDR   E
Sbjct  451  ---------------TLIFVETKRMADSLSDFLLNQ---------RFPATAIHGDRTQRE  486

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
            R++ LE F+ G    L+ T VAARG+DI  V +VIN  LP +  +YVHRIGR GRA   G
Sbjct  487  RERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTG  546

Query  614  LAISLVATEKEKVWYHVCSSRGKGCYNT  641
            +A +        V   +     +     
Sbjct  547  IATAFFNRGNRGVVRDLIDLLKEAHQEV  574


 Score = 97.1 bits (240),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 24/116 (21%), Positives = 45/116 (39%), Gaps = 10/116 (9%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + AF+   +   +   +    +  PT +Q  SIP+++ G D++  A+TGSGKTG F  P+
Sbjct  185  VNAFTNPPLDDHLIANITLAHYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPI  244

Query  61   IQIVYETLKDQQEGK----------KGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            +   ++                   +         +   +     +D    FA  S
Sbjct  245  LSQAFQNGPSPTPAPASGQFSYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRS  300


>sp|A4RHF1|DED1_PYRO7 ATP-dependent RNA helicase DED1 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=DED1 PE=3 SV=2
Length=671

 Score = 327 bits (837),  Expect = 1e-100, Method: Composition-based stats.
 Identities = 100/378 (26%), Positives = 161/378 (43%), Gaps = 60/378 (16%)

Query  246  EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNN  305
             F FP      A    P      +Q  G     +  +    P +LI+ P+REL  Q  + 
Sbjct  240  GFLFPILSQ--AFKTGPSPIPATNQGPGGYGRQRKAY----PTSLILAPTRELVSQIYDE  293

Query  306  IKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVR  365
             ++F        +R  ++ GG     QL  +E G D++V TPGRL DL+  G+++L  ++
Sbjct  294  SRKFA---YRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIK  350

Query  366  FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF  425
            +LVLDEAD +L  G+   I R+     +   + +  Q ++ SAT   + +++L+   +  
Sbjct  351  YLVLDEADRMLDMGFEPQIRRIVEG--EDMPNVQDRQTLMFSATFPGY-IQQLARDFLKD  407

Query  426  PTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW  485
              ++ +    S  + +   V+ V  + D++   L                          
Sbjct  408  YIFLSVGRVGSTSENITQRVMEVKHRDDKISHLL--------------------------  441

Query  486  SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL  545
                           +  H     +IF  TK + D L  +   Q               +
Sbjct  442  -------------DLLSTHGGGLTLIFVETKRNADELSDFLQNQ---------NLPATSI  479

Query  546  HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR  605
            HGDR   ER++ LE F+ G    L+ T VAARG+DI  V +VIN  LP +  +YVHRIGR
Sbjct  480  HGDRTQRERERALEMFRTGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGR  539

Query  606  VGRAERMGLAISLVATEK  623
             GRA   G+A +    + 
Sbjct  540  TGRAGNTGIATAFFDMKD  557


 Score = 97.9 bits (242),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 62/391 (16%), Positives = 120/391 (31%), Gaps = 81/391 (21%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             FS   +   +   +E   + +PT +Q  S+P+++GG D++  A+TGSGKTG F  P++ 
Sbjct  188  TFSNPPLDDHLISNIELARYKVPTPVQKYSVPIVMGGRDLMACAQTGSGKTGGFLFPILS  247

Query  63   IVYETLKDQQEG----------KKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS------  106
              ++T                 ++         +   +     YD    FA  S      
Sbjct  248  QAFKTGPSPIPATNQGPGGYGRQRKAYPTSLILAPTRELVSQIYDESRKFAYRSWVRPCV  307

Query  107  --DGLCCQSREVKEWHGC---RATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTD  161
               G    S+  +   GC    AT G +       V   ++G  R+    ++  +     
Sbjct  308  VYGGADIGSQLRQIERGCDLLVATPGRL-------VDLIERG--RISLCNIKYLVL----  354

Query  162  KFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPH  221
                       +  +  F+         +      D+     + +               
Sbjct  355  -------DEADRMLDMGFEPQIRRIVEGE------DMPNVQDRQTLMF------------  389

Query  222  MKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTK  281
                A FP         +    +  F    + G  + +       VK +    + +    
Sbjct  390  ---SATFP--GYIQQLARDFLKDYIFLSVGRVGSTSENITQRVMEVKHRDDKISHLLDLL  444

Query  282  FLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN---  338
                    LI   ++        N  +   ++ N  L    I G    R++   LE    
Sbjct  445  STHGGGLTLIFVETK-------RNADELSDFLQNQNLPATSIHGDRTQRERERALEMFRT  497

Query  339  -GVDIVVGTPGRLDDLVSTGKLNLSQVRFLV  368
                I+V T       V+   L++  V  ++
Sbjct  498  GRCPILVAT------AVAARGLDIPNVTHVI  522


>sp|Q5QMN3|RH20_ORYSJ DEAD-box ATP-dependent RNA helicase 20 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os01g0197200 PE=3 
SV=2
Length=494

 Score = 321 bits (823),  Expect = 2e-100, Method: Composition-based stats.
 Identities = 104/441 (24%), Positives = 171/441 (39%), Gaps = 69/441 (16%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            +  +D+G    +   +          +++                    + +++   G  
Sbjct  91   REFRDVGFPEYVLQEITKAGFVEPTPIQSQGWPMAL--------RGRDLIGIAETGSGKT  142

Query  267  VKSQHSGNAQVTQTKFLP--NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
            +         V     L   + P  L++ P+RELA Q      +F     + K++   I 
Sbjct  143  LAYLLPAIVHVNAQPILAPGDGPIVLVLAPTRELAVQIQQEATKFGA---SSKIKSTCIY  199

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GGV    Q+  L+ GV+IV+ TPGRL D++ +   NL +V +LVLDEAD +L  G+   I
Sbjct  200  GGVPKGPQVRDLQKGVEIVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQI  259

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED-SVPDTVHH  443
             ++ +QI          Q +  SAT    +V++L+   +  P  V +  E+      +  
Sbjct  260  KKIVSQI------RPDRQTLYWSATWPK-EVEQLARNFLFDPYKVIIGSEELKANHAISQ  312

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
             V                                     E+ SE+ K  K    +  I +
Sbjct  313  HV-------------------------------------EILSESQKYNKLVNLLEDIMD  335

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
                + +IF  TK  CD + +     G         +  + +HGD+   ER   L  FK 
Sbjct  336  --GSRILIFMDTKKGCDQITRQLRMDG---------WPALSIHGDKSQAERDWVLSEFKS  384

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
            G    +  TDVAARG+D+  V YVIN   P   ++YVHRIGR GRA   G A +      
Sbjct  385  GKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAAN  444

Query  624  EKVWYHVCSSRGKGCYNTRLK  644
             +    + +   +       +
Sbjct  445  ARFAKDLINILEEAGQKVSPE  465


 Score = 103 bits (257),  Expect = 7e-22, Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 47/107 (44%), Gaps = 4/107 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F ++G    + Q + +  ++ PT IQ++  P+ L G D++  AETGSGKT A+ +P 
Sbjct  90   VREFRDVGFPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAYLLPA  149

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            I  V      Q     G   I    +   +  +      + F   S 
Sbjct  150  IVHV----NAQPILAPGDGPIVLVLAPTRELAVQIQQEATKFGASSK  192


>sp|Q9C718|RH20_ARATH DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis 
thaliana OX=3702 GN=RH20 PE=2 SV=1
Length=501

 Score = 321 bits (823),  Expect = 2e-100, Method: Composition-based stats.
 Identities = 101/440 (23%), Positives = 172/440 (39%), Gaps = 67/440 (15%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K+ +D+G    +   +K         +++                    + +++   G  
Sbjct  99   KSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAM--------KGRDLIGIAETGSGKT  150

Query  267  VKSQHSGNAQVTQTKFLPNA--PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
            +         V     L +   P  L++ P+RELA Q         K+  + K++   I 
Sbjct  151  LSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEA---SKFGSSSKIKTTCIY  207

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GGV    Q+  L+ GV+IV+ TPGRL D++ +   NL +V +LVLDEAD +L  G+   I
Sbjct  208  GGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQI  267

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
             ++ + I          Q +  SAT    +V++LS+K ++ P  V +   D   +     
Sbjct  268  RKIVSHI------RPDRQTLYWSATWPK-EVEQLSKKFLYNPYKVIIGSSDLKANRAIRQ  320

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
            +V V  ++ +  + +       D                                     
Sbjct  321  IVDVISESQKYNKLVKLLEDIMD-------------------------------------  343

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
               + ++F  TK  CD + +     G         +  + +HGD+   ER   L  F+ G
Sbjct  344  -GSRILVFLDTKKGCDQITRQLRMDG---------WPALSIHGDKSQAERDWVLSEFRSG  393

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
                +  TDVAARG+D+  V YVIN   P   ++YVHRIGR GRA   G A +       
Sbjct  394  KSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANA  453

Query  625  KVWYHVCSSRGKGCYNTRLK  644
            +    + +   +       +
Sbjct  454  RFAKELTNILQEAGQKVSPE  473


 Score = 104 bits (258),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 48/107 (45%), Gaps = 4/107 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F ++G    + + V++  +  PT IQ++  P+ + G D++  AETGSGKT ++ +P 
Sbjct  98   VKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPA  157

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            I  V      Q     G   I    +   +  +      S F   S 
Sbjct  158  IVHV----NAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSK  200


>sp|Q8W4R3|RH30_ARATH DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis 
thaliana OX=3702 GN=RH30 PE=1 SV=2
Length=591

 Score = 324 bits (831),  Expect = 2e-100, Method: Composition-based stats.
 Identities = 100/433 (23%), Positives = 168/433 (39%), Gaps = 69/433 (16%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K  +D      I   +          ++                     + +++   G  
Sbjct  165  KMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMAL--------KGRDLIGIAETGSGKT  216

Query  267  VKSQHSGNAQVTQTKFL--PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
            +         V+    L   + P  LI+ P+RELA Q     ++F        +R   I 
Sbjct  217  LAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFG---LRSGVRSTCIY  273

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG     Q+  L  GV+IV+ TPGRL D++     NL +V +LVLDEAD +L  G+   I
Sbjct  274  GGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQI  333

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED-SVPDTVHH  443
             ++ +QI          Q ++ SAT    +V+ L+ + +  P    +   D     +++ 
Sbjct  334  RKIVSQI------RPDRQTLLWSATWP-REVETLARQFLRDPYKAIIGSTDLKANQSINQ  386

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
            V+  V                                +PE ++  + +LK          
Sbjct  387  VIEIVP-------------------------------TPEKYNRLLTLLKQL--------  407

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
                + +IF  TK  CD + +     G         +  + +HGD+   ER + L  FK 
Sbjct  408  MDGSKILIFVETKRGCDQVTRQLRMDG---------WPALAIHGDKTQSERDRVLAEFKS  458

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
            G    +  TDVAARG+D+  +  V+N   P+  ++Y+HRIGR GRA   G+A +    + 
Sbjct  459  GRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDN  518

Query  624  EKVWYHVCSSRGK  636
             K    +     +
Sbjct  519  AKFARELVKILQE  531


 Score = 109 bits (272),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 9/143 (6%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M  F +      I +A+ ++ +  PT IQA+  P+ L G D++  AETGSGKT A+ +P 
Sbjct  164  MKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPA  223

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120
            +  V    +  Q+       I    +   +  +   +    F     GL    R    + 
Sbjct  224  LVHVSAQPRLGQDD----GPIVLILAPTRELAVQIQEESRKF-----GLRSGVRSTCIYG  274

Query  121  GCRATKGLMKGKHYYEVSCHDQG  143
            G      +   +   E+     G
Sbjct  275  GAPKGPQIRDLRRGVEIVIATPG  297


>sp|P24346|DDX3_XENLA Putative ATP-dependent RNA helicase an3 
OS=Xenopus laevis OX=8355 GN=an3 PE=2 SV=1
Length=697

 Score = 327 bits (837),  Expect = 3e-100, Method: Composition-based stats.
 Identities = 141/654 (22%), Positives = 229/654 (35%), Gaps = 125/654 (19%)

Query  44   MAAETGSGKTGAFSIPVIQIVYETLKDQQE---GKKGKTTIKTGASVLNKWQMNPYDRGS  100
              AE+G   T    IP      E  ++      G+ G   I  G       +MN YDRG 
Sbjct  24   ADAESGVAGTKGRYIPPHLRNKEASRNDSNWDSGRGGNGYIN-GMQDDRDGRMNGYDRGG  82

Query  101  AFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGT  160
                GS G     R   +        G  K  +    S  D+G   + ++   +      
Sbjct  83   Y---GSRGTGRSDRGFYDRENSGWNSGRDKDAYSSFGSRGDRGKGSL-FNERGSGSRRTD  138

Query  161  DKFGFGFGGTGKKSHNKQF-----------------DNYGEEFTMHDTIGCYLDIDKGHV  203
            D+   GF G G +S    F                 D++ +    +D +       +  +
Sbjct  139  DRRQDGFDGMGNRSDKSGFGRFDRGNSRWSDDRNDEDDWSKPLAPNDRV-------EQEL  191

Query  204  KFSKNGKDLGLAFE----IPPHMKNQALFPAC-----------VLKNAELKFNFGEEE--  246
                +G + G+ FE    IP         P             ++ N +L          
Sbjct  192  F---SGSNTGINFEKYDDIPVEATGSNCPPHIESFHDVTMGEIIMGNIQLTRYTRPTPVQ  248

Query  247  ----FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKF---------------LPNAP  287
                     K   +A ++   G          +Q+                        P
Sbjct  249  KHAIPIIIEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDAMKHLQENGRYGRRKQFP  308

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
             +L++ P+RELA Q     ++F       ++R  ++ GG     Q+  LE G  ++V TP
Sbjct  309  LSLVLAPTRELAVQIYEEARKFA---YRSRVRPCVVYGGADIGQQIRDLERGCHLLVATP  365

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GRL D++  GK+ L   ++LVLDEAD +L  G+   I R+  Q           Q ++ S
Sbjct  366  GRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ--DTMPPKGVRQTMMFS  423

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT    +++ L+   +    ++ +    S  + +   VV V     R +           
Sbjct  424  ATFPK-EIQILARDFLDEYIFLAVGRVGSTSENITQKVVWVEEMDKRSF-----------  471

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                                                 K    ++F  TK   D LE +  
Sbjct  472  ----------------------------LLDLLNATGKDSLTLVFVETKKGADALEDFLY  503

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
             +G         ++C  +HGDR   +R++ L +F+ G    L+ T VAARG+DI  V +V
Sbjct  504  HEG---------YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHV  554

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
            IN  LP + + YVHRIGR GR   +GLA S    +   +   +     +     
Sbjct  555  INFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNINITKDLLDLLVEAKQEV  608


 Score = 102 bits (255),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 61/394 (15%), Positives = 133/394 (34%), Gaps = 84/394 (21%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F ++ +   I   ++   +  PT +Q  +IP+I+   D++  A+TGSGKT AF +P+
Sbjct  220  IESFHDVTMGEIIMGNIQLTRYTRPTPVQKHAIPIIIEKRDLMACAQTGSGKTAAFLLPI  279

Query  61   IQIVY-----ETLKDQQE----GKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS-----  106
            +  +Y     + +K  QE    G++ +  +    +   +  +  Y+    FA  S     
Sbjct  280  LSQIYADGPGDAMKHLQENGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSRVRPC  339

Query  107  -----DGLCCQSREVKEW-HGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGT  160
                   +  Q R+++   H   AT G +       V   ++G  ++G         +  
Sbjct  340  VVYGGADIGQQIRDLERGCHLLVATPGRL-------VDMMERG--KIG--LDFCKYLVLD  388

Query  161  DKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPP  220
            +           +  +  F+         DT+                          P 
Sbjct  389  EAD---------RMLDMGFEPQIRRIVEQDTM-------------------------PPK  414

Query  221  HMKNQALFPACVLKNAEL--KFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVT  278
             ++   +F A   K  ++  +    E  F    + G  + +       V+     +  + 
Sbjct  415  GVRQTMMFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQKVVWVEEMDKRSFLLD  474

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
                       L+   ++             + ++ +       I G  + RD+   L  
Sbjct  475  LLNATGKDSLTLVFVETK-------KGADALEDFLYHEGYACTSIHGDRSQRDREEALHQ  527

Query  339  ----GVDIVVGTPGRLDDLVSTGKLNLSQVRFLV  368
                   I+V T       V+   L++S V+ ++
Sbjct  528  FRSGKSPILVAT------AVAARGLDISNVKHVI  555


>sp|A7EML8|RRP3_SCLS1 ATP-dependent rRNA helicase rrp3 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=rrp3 PE=3 SV=1
Length=482

 Score = 320 bits (820),  Expect = 3e-100, Method: Composition-based stats.
 Identities = 109/503 (22%), Positives = 190/503 (38%), Gaps = 81/503 (16%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
            +K+ KDLG+   +              ++   +                 + L++   G 
Sbjct  55   TKSFKDLGIVDSLCEACDTLGYKAPTPIQRESIPLAL--------QGRDLIGLAETGSGK  106

Query  266  IVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
                       +      P     L++ P+RELA Q   + +     I   +++  +I+G
Sbjct  107  TAAFALPI---LQSLLDKPQPLFGLVLAPTRELAYQISQSFEALGSII---RVKCAVIVG  160

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            G+    Q   L     I+V TPGRL D + +T   +L  +++LV+DEAD LL   +   +
Sbjct  161  GMDMVPQAIALGKKPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPIL  220

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
            +++   +P      +  +  + SAT+ S  V+ L    +  P  V +             
Sbjct  221  DKILKVLP------RERRTYLFSATI-SSKVESLQRASLKDPLRVSI-------------  260

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
                +    +    L +++I    VH                      K  Y +  + E 
Sbjct  261  ----SSNKYQTVSTLIQNYIFIPLVH----------------------KDTYLIYLLNEF  294

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
                AIIF RT  +   +       G         F  + LHG      R   L +F+ G
Sbjct  295  AGQSAIIFTRTVNETQRIAILLRTLG---------FGAIPLHGQLSQSSRLGALNKFRAG  345

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
                L+ TDVAARG+DI  V  V+N  +P + + Y+HR+GR  RA + G AIS V     
Sbjct  346  SREILVATDVAARGLDIPSVDVVLNYDMPQDSKTYIHRVGRTARAGKSGHAISFVTQYDV  405

Query  625  KVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEF  684
            ++W  + ++ GK     +  +D            + E + H    +  +  D        
Sbjct  406  EIWMRIEAALGKKQEEYQTVKDEVMVF----KPRVEEAQRHARNEMKNLHED-----RGK  456

Query  685  DGKVTYGQKRAAGGGSYKGHVDI  707
             G V  G++ A G  + +G  ++
Sbjct  457  KGAVLKGRRPANG--AKRGRDEM  477


 Score = 105 bits (261),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 28/94 (30%), Positives = 49/94 (52%), Gaps = 9/94 (10%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +F ++G++  + +A + + +  PT IQ ESIPL L G D++  AETGSGKT AF++P++
Sbjct  56   KSFKDLGIVDSLCEACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPIL  115

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNP  95
            Q + +         K +       +   +     
Sbjct  116  QSLLD---------KPQPLFGLVLAPTRELAYQI  140


>sp|Q755W0|FAL1_EREGS ATP-dependent RNA helicase FAL1 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=FAL1 PE=3 SV=2
Length=398

 Score = 317 bits (811),  Expect = 4e-100, Method: Composition-based stats.
 Identities = 109/441 (25%), Positives = 183/441 (41%), Gaps = 71/441 (16%)

Query  203  VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAP  262
            + F +N +D  L  +    +     F +  L+   L+  +G   F+ P      A+++  
Sbjct  1    MSFDRN-QDGKLKVKTSSKLPVSPTFESMKLQENLLRGIYGY-GFEAPSAIQSRAITQII  58

Query  263  DGY-IVKSQHSGNAQ--------VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI  313
             G  ++    SG  +        +          +AL++ P+RELA Q    ++    Y+
Sbjct  59   RGKDVIAQAQSGTGKTATFTIGMLQVIDSSSKDLQALVLSPTRELAAQISQVVRNLGDYM  118

Query  314  DNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEAD  373
            +   +  L   GG A +  +S +  G  ++ GTPGR+ D++    +N   V+ LVLDEAD
Sbjct  119  N---VVALACTGGKALQQDISKVNKGCHVMSGTPGRVLDMIKRRIINTRHVKMLVLDEAD  175

Query  374  GLLS--QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL  431
             LLS   G+   +  +  ++P               AT+ S DV ++++K M  P  + +
Sbjct  176  ELLSETLGFKQQLYDIFTKLPSSVQVVVVS------ATM-SKDVLEVTKKFMSDPVKILV  228

Query  432  KGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
            K ++   + +    + V+ +                                        
Sbjct  229  KRDEVSLEGIKQYHINVDKEE---------------------------------------  249

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
             K +          + Q +IFC TK   D L    IQ         + F+   +HGD K 
Sbjct  250  WKFDTLCDLYDSLTITQCVIFCNTKKKVDWLSHKLIQ---------NNFAVASIHGDMKQ  300

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
             +R + +  F+ G  R LI TDV ARGID+  V  VIN  LP+  +NY+HRIGR GR  R
Sbjct  301  DDRDKVMSDFRSGSSRVLISTDVWARGIDVQQVSLVINYDLPELLENYIHRIGRSGRFGR  360

Query  612  MGLAISLVATEKEKVWYHVCS  632
             G+AI+ +  E+      +  
Sbjct  361  KGVAINFITREEVTKLKSIEK  381


 Score = 94.4 bits (233),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 50/128 (39%), Gaps = 2/128 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F  M +   + + +    +  P+ IQ+ +I  I+ G DV+  A++G+GKT  F+I ++Q
Sbjct  24   TFESMKLQENLLRGIYGYGFEAPSAIQSRAITQIIRGKDVIAQAQSGTGKTATFTIGMLQ  83

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREV--KEWH  120
            ++  + KD Q      T             +  Y    A A        Q      K  H
Sbjct  84   VIDSSSKDLQALVLSPTRELAAQISQVVRNLGDYMNVVALACTGGKALQQDISKVNKGCH  143

Query  121  GCRATKGL  128
                T G 
Sbjct  144  VMSGTPGR  151


>sp|P24784|DBP1_YEAST ATP-dependent RNA helicase DBP1 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP1 
PE=1 SV=2
Length=617

 Score = 324 bits (830),  Expect = 4e-100, Method: Composition-based stats.
 Identities = 92/355 (26%), Positives = 152/355 (43%), Gaps = 55/355 (15%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P AL++ P+RELA Q     +   K+     +R  ++ GG    +Q+  ++ G D++V T
Sbjct  238  PSALVLAPTRELATQIFEEAR---KFTYRSWVRPCVVYGGAPIGNQMREVDRGCDLLVAT  294

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL+DL+  GK++L+ +++LVLDEAD +L  G+   I  +  +        +  Q ++ 
Sbjct  295  PGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECD--MPSVENRQTLMF  352

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT    D++ L+   +    ++ +    S  + +   ++ V+                 
Sbjct  353  SATFP-VDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVD-----------------  394

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                                    + K    +  +        +IF  TK   D L  + 
Sbjct  395  -----------------------DMDKKSALLDLLSAEHKGLTLIFVETKRMADQLTDFL  431

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
            I Q          F    +HGDR   ER++ L  FK      L+ T VAARG+DI  V +
Sbjct  432  IMQ---------NFKATAIHGDRTQAERERALSAFKANVADILVATAVAARGLDIPNVTH  482

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
            VIN  LP +  +YVHRIGR GRA   G+A S   +  + +   +     +     
Sbjct  483  VINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQNIVKGLMEILNEANQEV  537


 Score = 94.0 bits (232),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 23/112 (21%), Positives = 45/112 (40%), Gaps = 6/112 (5%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  FS   +   + + ++   +  PT +Q  SIP++  G D++  A+TGSGKTG F  P+
Sbjct  153  ILDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPL  212

Query  61   IQIVYETLKDQQEGK------KGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
               ++ +       K      +         +   +     ++    F   S
Sbjct  213  FTELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRS  264


>sp|A6ZWD3|DBP1_YEAS7 ATP-dependent RNA helicase DBP1 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DBP1 PE=3 SV=1
Length=617

 Score = 324 bits (830),  Expect = 4e-100, Method: Composition-based stats.
 Identities = 92/355 (26%), Positives = 152/355 (43%), Gaps = 55/355 (15%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P AL++ P+RELA Q     +   K+     +R  ++ GG    +Q+  ++ G D++V T
Sbjct  238  PSALVLAPTRELATQIFEEAR---KFTYRSWVRPCVVYGGAPIGNQMREVDRGCDLLVAT  294

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL+DL+  GK++L+ +++LVLDEAD +L  G+   I  +  +        +  Q ++ 
Sbjct  295  PGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECD--MPSVENRQTLMF  352

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT    D++ L+   +    ++ +    S  + +   ++ V+                 
Sbjct  353  SATFP-VDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVD-----------------  394

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                                    + K    +  +        +IF  TK   D L  + 
Sbjct  395  -----------------------DMDKKSALLDLLSAEHKGLTLIFVETKRMADQLTDFL  431

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
            I Q          F    +HGDR   ER++ L  FK      L+ T VAARG+DI  V +
Sbjct  432  IMQ---------NFKATAIHGDRTQAERERALSAFKANVADILVATAVAARGLDIPNVTH  482

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
            VIN  LP +  +YVHRIGR GRA   G+A S   +  + +   +     +     
Sbjct  483  VINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQNIVKGLMEILNEANQEV  537


 Score = 94.0 bits (232),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 23/112 (21%), Positives = 45/112 (40%), Gaps = 6/112 (5%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  FS   +   + + ++   +  PT +Q  SIP++  G D++  A+TGSGKTG F  P+
Sbjct  153  ILDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPL  212

Query  61   IQIVYETLKDQQEGK------KGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
               ++ +       K      +         +   +     ++    F   S
Sbjct  213  FTELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRS  264


>sp|A5DWJ1|FAL1_LODEL ATP-dependent RNA helicase FAL1 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=FAL1 PE=3 SV=1
Length=399

 Score = 317 bits (811),  Expect = 4e-100, Method: Composition-based stats.
 Identities = 117/450 (26%), Positives = 185/450 (41%), Gaps = 73/450 (16%)

Query  211  DLGLAF--EIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYI  266
            D  L F  +    +K    F +  LK   LK  + +G E          + +    D   
Sbjct  9    DNELEFSHKSTKGVKVHRTFESMRLKPELLKGIYAYGFEAPSAIQSRAIMQIISGRDTIA  68

Query  267  VKSQHSGNA------QVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRE  320
                 +G         +          +AL++ P+RELA Q  N IK    Y++   ++ 
Sbjct  69   QAQSGTGKTATFSIGMLEVLDSKSKECQALVLSPTRELATQIQNVIKHLGDYMN---IQT  125

Query  321  LLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGY  380
               IGG      +  L+ G  IV GTPGR+ D++    L+   ++ L+LDEAD L ++G+
Sbjct  126  YACIGGKNVGTDIKRLQQGQQIVSGTPGRVLDVIKRRNLSTRHIKMLILDEADELFTKGF  185

Query  381  SDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDT  440
             + I  ++  +P        +QV+V SATL + +V +++ K    P  + +K E+     
Sbjct  186  KEQIYEIYKHLP------PGVQVVVVSATL-THEVLEMTGKFTTDPVKILVKREEVSLSG  238

Query  441  VHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRA  500
            +    +    +                                         K +     
Sbjct  239  IKQYYIQCEKED---------------------------------------WKFDTLCDL  259

Query  501  IKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLER  560
                 + QA+IFC TKI  + L     +Q          F+ V +HGD K  ER   +  
Sbjct  260  YDNLTITQAVIFCNTKIKVNWLTDQMRKQ---------NFTVVAMHGDMKQEERDAIMND  310

Query  561  FKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            F+ G+ R LI TDV ARGID+  +  VIN  LP +K+NY+HRIGR GR  R G AI+L+ 
Sbjct  311  FRSGNSRVLISTDVWARGIDVQQISLVINYDLPLDKENYIHRIGRSGRFGRKGTAINLLT  370

Query  621  TEKEKVWYHVCSSRGKGCYNTRLKEDGGCT  650
                     +     +  Y+T++KE     
Sbjct  371  KSD-----TIELKALEKYYSTKIKEMPSNV  395


 Score = 95.6 bits (236),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 24/102 (24%), Positives = 45/102 (44%), Gaps = 0/102 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F  M + PE+ + +    +  P+ IQ+ +I  I+ G D +  A++G+GKT  FSI ++
Sbjct  26   RTFESMRLKPELLKGIYAYGFEAPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGML  85

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
            +++    K+ Q      T             +  Y     +A
Sbjct  86   EVLDSKSKECQALVLSPTRELATQIQNVIKHLGDYMNIQTYA  127


>sp|P06634|DED1_YEAST ATP-dependent RNA helicase DED1 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DED1 
PE=1 SV=2
Length=604

 Score = 324 bits (829),  Expect = 5e-100, Method: Composition-based stats.
 Identities = 110/434 (25%), Positives = 167/434 (38%), Gaps = 86/434 (20%)

Query  208  NGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIV  267
            NG+DL    +         LFP        L  +F       P   G     KA      
Sbjct  178  NGRDLMACAQTGSGKTGGFLFPV-------LSESFKTGPSPQPESQGSFYQRKA------  224

Query  268  KSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
                               P A+I+ P+RELA Q  +  K   K+     ++  ++ GG 
Sbjct  225  ------------------YPTAVIMAPTRELATQIFDEAK---KFTYRSWVKACVVYGGS  263

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM  387
               +QL  +E G D++V TPGRL+DL+  GK++L+ V++LVLDEAD +L  G+   I  +
Sbjct  264  PIGNQLREIERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHI  323

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
                          Q ++ SAT    D++ L+   +    ++ +    S  + +   V+ 
Sbjct  324  VEDCDMTPVG--ERQTLMFSATFP-ADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLY  380

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
            V  +                                         K    +  +      
Sbjct  381  VENQD----------------------------------------KKSALLDLLSASTDG  400

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
              +IF  TK   D L  + I Q          F    +HGDR   ER++ L  F+ G   
Sbjct  401  LTLIFVETKRMADQLTDFLIMQ---------NFRATAIHGDRTQSERERALAAFRSGAAT  451

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             L+ T VAARG+DI  V +VIN  LP +  +YVHRIGR GRA   GLA +   +E   + 
Sbjct  452  LLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIV  511

Query  628  YHVCSSRGKGCYNT  641
              +     +     
Sbjct  512  KGLHEILTEANQEV  525


 Score = 99.8 bits (247),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 49/112 (44%), Gaps = 6/112 (5%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F+   +   + + ++   +  PT +Q  S+P++  G D++  A+TGSGKTG F  PV
Sbjct  141  ITEFTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPV  200

Query  61   IQIVYETLKDQQEGKKG---KTTIKTGASV---LNKWQMNPYDRGSAFAIGS  106
            +   ++T    Q   +G   +      A +     +     +D    F   S
Sbjct  201  LSESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRS  252


>sp|A6ZP47|DED1_YEAS7 ATP-dependent RNA helicase DED1 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DED1 PE=3 SV=1
Length=604

 Score = 324 bits (829),  Expect = 5e-100, Method: Composition-based stats.
 Identities = 110/434 (25%), Positives = 167/434 (38%), Gaps = 86/434 (20%)

Query  208  NGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIV  267
            NG+DL    +         LFP        L  +F       P   G     KA      
Sbjct  178  NGRDLMACAQTGSGKTGGFLFPV-------LSESFKTGPSPQPESQGSFYQRKA------  224

Query  268  KSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
                               P A+I+ P+RELA Q  +  K   K+     ++  ++ GG 
Sbjct  225  ------------------YPTAVIMAPTRELATQIFDEAK---KFTYRSWVKACVVYGGS  263

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM  387
               +QL  +E G D++V TPGRL+DL+  GK++L+ V++LVLDEAD +L  G+   I  +
Sbjct  264  PIGNQLREIERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHI  323

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
                          Q ++ SAT    D++ L+   +    ++ +    S  + +   V+ 
Sbjct  324  VEDCDMTPVG--ERQTLMFSATFP-ADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLY  380

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
            V  +                                         K    +  +      
Sbjct  381  VENQD----------------------------------------KKSALLDLLSASTDG  400

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
              +IF  TK   D L  + I Q          F    +HGDR   ER++ L  F+ G   
Sbjct  401  LTLIFVETKRMADQLTDFLIMQ---------NFRATAIHGDRTQSERERALAAFRSGAAT  451

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             L+ T VAARG+DI  V +VIN  LP +  +YVHRIGR GRA   GLA +   +E   + 
Sbjct  452  LLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIV  511

Query  628  YHVCSSRGKGCYNT  641
              +     +     
Sbjct  512  KGLHEILTEANQEV  525


 Score = 99.8 bits (247),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 49/112 (44%), Gaps = 6/112 (5%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F+   +   + + ++   +  PT +Q  S+P++  G D++  A+TGSGKTG F  PV
Sbjct  141  ITEFTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPV  200

Query  61   IQIVYETLKDQQEGKKG---KTTIKTGASV---LNKWQMNPYDRGSAFAIGS  106
            +   ++T    Q   +G   +      A +     +     +D    F   S
Sbjct  201  LSESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRS  252


>sp|Q75B50|DED1_EREGS ATP-dependent RNA helicase DED1 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DED1 PE=3 SV=2
Length=623

 Score = 324 bits (830),  Expect = 5e-100, Method: Composition-based stats.
 Identities = 97/355 (27%), Positives = 151/355 (43%), Gaps = 55/355 (15%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P A+++ P+RELA Q  +  K   K+     ++  ++ GG   R Q+  LE G D++V T
Sbjct  229  PTAVVLAPTRELATQIFDEAK---KFTYRSWVKPCVVYGGADIRQQIRELERGCDLIVAT  285

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL+DL+  GK++L  V++LVLDEAD +L  G+   I  +           +  Q ++ 
Sbjct  286  PGRLNDLLERGKISLCSVKYLVLDEADRMLDMGFEPQIRHIVEGCD--MPTVENRQTLMF  343

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT  + D++ L+   +    ++ +    S  + +   V+ V                  
Sbjct  344  SATFPT-DIQHLAADFLKDYIFLSVGRVGSTSENITQKVLHVE-----------------  385

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                                    I K    +  +        ++F  TK   D L  + 
Sbjct  386  -----------------------DIDKRSVLLDLLAASDGGLTLVFVETKRMADALTDFL  422

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
            I Q           S   +HGDR   ER++ L  F+ G    L+ T VAARG+DI  V +
Sbjct  423  IMQ---------NLSATAIHGDRTQAERERALAFFRTGRANVLVATAVAARGLDIPNVTH  473

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
            VIN  LP +  +YVHRIGR GRA   GLA +      + V   +     +     
Sbjct  474  VINYDLPSDIDDYVHRIGRTGRAGNTGLATAFFNRGNKNVVKELVDILEEANQEV  528


 Score = 99.4 bits (246),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 23/111 (21%), Positives = 44/111 (40%), Gaps = 5/111 (5%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F+   +   + + ++   +  PT +Q  S+P++  G D++  A+TGSGKTG F  PV
Sbjct  145  ITEFTSPPLDELLLENIKLARFTKPTPVQKYSVPIVAKGRDLMACAQTGSGKTGGFLFPV  204

Query  61   IQIVYETLKDQQEGKKG-----KTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            +   +         + G             +   +     +D    F   S
Sbjct  205  LSQSFSNGPASTPDESGYYMRKAYPTAVVLAPTRELATQIFDEAKKFTYRS  255


>sp|Q9LYJ9|RH46_ARATH DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis 
thaliana OX=3702 GN=RH46 PE=2 SV=2
Length=645

 Score = 325 bits (832),  Expect = 5e-100, Method: Composition-based stats.
 Identities = 122/514 (24%), Positives = 205/514 (40%), Gaps = 96/514 (19%)

Query  153  QASLDLGTDKFGFGFGGTGKKSHNKQ-FDNYGE--EFTMHDTIGCYLDIDKGHVK-----  204
             +  + G +   +G G  G KS +   F+  G     + +D      +   G        
Sbjct  71   SSGFNSGKEDDKYGRGSDGPKSDSGSRFNEAGRTGPISSNDAASGLGNASSGGSSARGPP  130

Query  205  ------------FSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFG---------  243
                        + +  +      ++PP + +   F A  L N  L+  +          
Sbjct  131  SSAAGNELSPEAYCRKHEITVSGGQVPPPLMS---FEATGLPNELLREVYSAGFSAPSPI  187

Query  244  --EEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN-APKALIVEPSRELAE  300
              +           VA++K   G  +     G   + +        P  L++ P+RELA 
Sbjct  188  QAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTRELAT  247

Query  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN  360
            Q      +F K   + K+    + GG     QL  +E GVDIVV TPGRL+D++   +++
Sbjct  248  QIQVEALKFGK---SSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDILEMKRIS  304

Query  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
            L QV +LVLDEAD +L  G+   I ++ N++P       + Q ++ +AT    +V+K++ 
Sbjct  305  LHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPT------KRQTLMYTATWPK-EVRKIAA  357

Query  421  KIMHFPTWVDLKGEDSVP--DTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPG  478
             ++  P  V++   D +    ++   +  + P                            
Sbjct  358  DLLVNPAQVNIGNVDELVANKSITQTIEVLAPM---------------------------  390

Query  479  ANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGH  538
                E  S   +IL+         +    + IIFC TK  CD L +   +          
Sbjct  391  ----EKHSRLEQILRS--------QEPGSKIIIFCSTKRMCDQLARNLTR----------  428

Query  539  QFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQN  598
             F    +HGD+   ER   L +F+ G    L+ TDVAARG+D+  +  V+N   P+  ++
Sbjct  429  TFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVED  488

Query  599  YVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
            YVHRIGR GRA   GLA +    +  K    +  
Sbjct  489  YVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIK  522


 Score = 99.8 bits (247),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 56/373 (15%), Positives = 122/373 (33%), Gaps = 59/373 (16%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F   G+  E+ + V    +  P+ IQA+S P+ +   D++  A+TGSGKT  + IP 
Sbjct  160  LMSFEATGLPNELLREVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPG  219

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD-GLCCQSREVKEW  119
               +     D + G           S   +           F   S     C       +
Sbjct  220  FMHLQRIHNDSRMG-----PTILVLSPTRELATQIQVEALKFGKSSKISCACL------Y  268

Query  120  HGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQF  179
             G      L + +   ++     G         + SL     +  +       +  +  F
Sbjct  269  GGAPKGPQLKEIERGVDIVVATPGRLNDILEMKRISL----HQVSYLVLDEADRMLDMGF  324

Query  180  DNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELK  239
            +    +          +   +  + ++            P  ++      A +L N   +
Sbjct  325  EPQIRKIVNE------VPTKRQTLMYT---------ATWPKEVRK---IAADLLVNPA-Q  365

Query  240  FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELA  299
             N G             ++++  +      +HS   Q+ +++      K +I   ++ + 
Sbjct  366  VNIGN----VDELVANKSITQTIEVLAPMEKHSRLEQILRSQE--PGSKIIIFCSTKRMC  419

Query  300  EQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGTPGRLDDLVS  355
            +Q   N+ +              I G  +  ++  VL         ++V T     D+ +
Sbjct  420  DQLARNLTR--------TFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVAT-----DVAA  466

Query  356  TGKLNLSQVRFLV  368
             G L++  +R +V
Sbjct  467  RG-LDVKDIRVVV  478


>sp|Q0UWA6|DED1_PHANO ATP-dependent RNA helicase DED1 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=DED1 PE=3 SV=1
Length=696

 Score = 326 bits (835),  Expect = 7e-100, Method: Composition-based stats.
 Identities = 101/404 (25%), Positives = 160/404 (40%), Gaps = 69/404 (17%)

Query  252  KDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNA--------------PKALIVEPSRE  297
                +A ++   G          AQ  Q    P                P +LI+ P+RE
Sbjct  238  GRDLMACAQTGSGKTGGFLFPILAQAFQNGPSPPPTAQAGGYGRQRKAYPTSLILAPTRE  297

Query  298  LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTG  357
            L  Q  +  ++F        +R  ++ GG     QL  +E G D++V TPGRL DL+  G
Sbjct  298  LVSQIFDEARKFA---YRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERG  354

Query  358  KLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKK  417
            +++L+ +++LVLDEAD +L  G+   I R+     +        Q ++ SAT    D++ 
Sbjct  355  RISLASIKYLVLDEADRMLDMGFEPQIRRIVEG--EDMPPTAGRQTLMFSATFP-RDIQM  411

Query  418  LSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRP  477
            L+   +    ++ +    S  + +   +  V     R                       
Sbjct  412  LARDFLKEYIFLSVGRVGSTSENITQKIEYVEDADKR-----------------------  448

Query  478  GANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKG  537
                                +  +  H    ++IF  TK   D+L  + I QG       
Sbjct  449  -----------------SVLLDILHTHGAGLSLIFVETKRMADSLSDFLINQG-------  484

Query  538  HQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQ  597
              F    +HGDR   ER++ LE F+ G    L+ T VAARG+DI  V +V+N  LP +  
Sbjct  485  --FPATSIHGDRTQREREKALEMFRSGRCPILVATAVAARGLDIPNVTHVVNYDLPTDID  542

Query  598  NYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
            +YVHRIGR GRA   G+A +        V   +     +     
Sbjct  543  DYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDLLDLLKEANQEV  586


 Score = 100 bits (250),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 25/114 (22%), Positives = 48/114 (42%), Gaps = 8/114 (7%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F+   +   +   +E   + +PT +Q  SIP+++GG D++  A+TGSGKTG F  P+
Sbjct  200  VTRFTNPPLDDHLLSNIELSGYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPI  259

Query  61   IQIVYETLKDQQEG--------KKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            +   ++                ++         +   +     +D    FA  S
Sbjct  260  LAQAFQNGPSPPPTAQAGGYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRS  313


>sp|Q61656|DDX5_MOUSE Probable ATP-dependent RNA helicase DDX5 
OS=Mus musculus OX=10090 GN=Ddx5 PE=1 SV=2
Length=614

 Score = 323 bits (828),  Expect = 9e-100, Method: Composition-based stats.
 Identities = 107/470 (23%), Positives = 179/470 (38%), Gaps = 72/470 (15%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
             N  +      +   +  Q       ++           +         V +++   G  
Sbjct  94   LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLD--------MVGVAQTGSGKT  145

Query  267  VKSQHSGNAQVTQTKFLP--NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
            +         +    FL   + P  L++ P+RELA+Q         +Y    +L+   I 
Sbjct  146  LSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVA---AEYCRACRLKSTCIY  202

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG     Q+  LE GV+I + TPGRL D +  GK NL +  +LVLDEAD +L  G+   I
Sbjct  203  GGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQI  262

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG-EDSVPDTVHH  443
             ++ +QI          Q ++ SAT    +V++L+E  +     +++   E S    +  
Sbjct  263  RKIVDQI------RPDRQTLMWSATWPK-EVRQLAEDFLKDYIHINIGALELSANHNILQ  315

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
            +V   +                                     +  K  K    +  I  
Sbjct  316  IVDVCH-------------------------------------DVEKDEKLIRLMEEIMS  338

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
             K ++ I+F  TK  CD L +   + G         +  + +HGD+   ER   L  FK 
Sbjct  339  EKENKTIVFVETKRRCDELTRKMRRDG---------WPAMGIHGDKSQQERDWVLNEFKH  389

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
            G    LI TDVA+RG+D+  V +VIN   P+  ++Y+HRIGR  R+ + G A +      
Sbjct  390  GKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN  449

Query  624  EKVWYHVCSSRGKGCYN-----TRLKEDGGCTIWYNEMQLLSEIEEHLNC  668
             K    + S   +          +L ED G         +  +  +  + 
Sbjct  450  IKQVSDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSA  499


 Score = 88.3 bits (217),  Expect = 9e-17, Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 41/94 (44%), Gaps = 4/94 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E      +   +   ++  PT IQA+  P+ L G D++  A+TGSGKT ++ +P 
Sbjct  93   VLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPA  152

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
            I  +      Q   ++G   I    +   +    
Sbjct  153  IVHI----NHQPFLERGDGPICLVLAPTRELAQQ  182


>sp|Q9Z6C9|CSHA_LIMRT ATP-dependent RNA helicase CshA OS=Limosilactobacillus 
reuteri OX=1598 GN=cshA PE=3 SV=1
Length=497

 Score = 319 bits (818),  Expect = 1e-99, Method: Composition-based stats.
 Identities = 106/421 (25%), Positives = 177/421 (42%), Gaps = 70/421 (17%)

Query  212  LGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQH  271
            LGL+  +   +K      A  ++   +               G   + +A  G   K+  
Sbjct  6    LGLSDSLLKAIKRSGYEEATPIQEQTIPMVLE----------GKDVIGQAQTG-TGKTAA  54

Query  272  SGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARD  331
             G   +          +A+I+ P+RELA QT   + +  K   +  +R  ++ GG   R 
Sbjct  55   FGLPIIENVDTENPNIQAIIISPTRELAIQTQEELYRLGK---DKHVRVQVVYGGADIRR  111

Query  332  QLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQI  391
            Q+  L+    I+VGTPGRL D ++   + L  ++ LVLDEAD +L+ G+ + I  +  + 
Sbjct  112  QIKSLKQHPQILVGTPGRLRDHINRHTVKLDHIKTLVLDEADEMLNMGFLEDIESIIKET  171

Query  392  PQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPK  451
            P         Q ++ SAT+   ++K++  + M  P  V +K ++   D V    V     
Sbjct  172  PD------DRQTLLFSATMPP-EIKRIGVQFMSDPETVRIKAKELTTDLVDQYYVR----  220

Query  452  TDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAII  511
                                                A    K +   R I     D  I+
Sbjct  221  ------------------------------------ARDYEKFDIMTRLIDVQDPDLTIV  244

Query  512  FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLIC  571
            F RTK   D L +  I +G         ++   +HGD    +R + + +FK  ++  L+ 
Sbjct  245  FGRTKRRVDELSKGLIARG---------YNAAGIHGDLTQDKRSKIMWKFKNNELDILVA  295

Query  572  TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVC  631
            TDVAARG+DI GV +V N  +P +  +YVHRIGR GRA   G++++ V   +    + + 
Sbjct  296  TDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLHEIE  355

Query  632  S  632
             
Sbjct  356  K  356


 Score = 108 bits (270),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 59/143 (41%), Gaps = 14/143 (10%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FSE+G+   + +A++   +   T IQ ++IP++L G DV+  A+TG+GKT AF +P+I+ 
Sbjct  3    FSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLEGKDVIGQAQTGTGKTAAFGLPIIEN  62

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            V     + Q             S   +  +   +                R    + G  
Sbjct  63   VDTENPNIQ---------AIIISPTRELAIQTQEELYRLGKDKH-----VRVQVVYGGAD  108

Query  124  ATKGLMKGKHYYEVSCHDQGLCR  146
              + +   K + ++     G  R
Sbjct  109  IRRQIKSLKQHPQILVGTPGRLR  131


>sp|P17844|DDX5_HUMAN Probable ATP-dependent RNA helicase DDX5 
OS=Homo sapiens OX=9606 GN=DDX5 PE=1 SV=1
Length=614

 Score = 323 bits (827),  Expect = 1e-99, Method: Composition-based stats.
 Identities = 107/470 (23%), Positives = 179/470 (38%), Gaps = 72/470 (15%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
             N  +      +   +  Q       ++           +         V +++   G  
Sbjct  94   LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLD--------MVGVAQTGSGKT  145

Query  267  VKSQHSGNAQVTQTKFLP--NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
            +         +    FL   + P  L++ P+RELA+Q         +Y    +L+   I 
Sbjct  146  LSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVA---AEYCRACRLKSTCIY  202

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG     Q+  LE GV+I + TPGRL D +  GK NL +  +LVLDEAD +L  G+   I
Sbjct  203  GGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQI  262

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG-EDSVPDTVHH  443
             ++ +QI          Q ++ SAT    +V++L+E  +     +++   E S    +  
Sbjct  263  RKIVDQI------RPDRQTLMWSATWPK-EVRQLAEDFLKDYIHINIGALELSANHNILQ  315

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
            +V   +                                     +  K  K    +  I  
Sbjct  316  IVDVCH-------------------------------------DVEKDEKLIRLMEEIMS  338

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
             K ++ I+F  TK  CD L +   + G         +  + +HGD+   ER   L  FK 
Sbjct  339  EKENKTIVFVETKRRCDELTRKMRRDG---------WPAMGIHGDKSQQERDWVLNEFKH  389

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
            G    LI TDVA+RG+D+  V +VIN   P+  ++Y+HRIGR  R+ + G A +      
Sbjct  390  GKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN  449

Query  624  EKVWYHVCSSRGKGCYN-----TRLKEDGGCTIWYNEMQLLSEIEEHLNC  668
             K    + S   +          +L ED G         +  +  +  + 
Sbjct  450  IKQVSDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSA  499


 Score = 88.3 bits (217),  Expect = 9e-17, Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 41/94 (44%), Gaps = 4/94 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E      +   +   ++  PT IQA+  P+ L G D++  A+TGSGKT ++ +P 
Sbjct  93   VLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPA  152

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
            I  +      Q   ++G   I    +   +    
Sbjct  153  IVHI----NHQPFLERGDGPICLVLAPTRELAQQ  182


>sp|A2QI25|DED1_ASPNC ATP-dependent RNA helicase ded1 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=ded1 PE=3 SV=1
Length=678

 Score = 325 bits (832),  Expect = 1e-99, Method: Composition-based stats.
 Identities = 100/388 (26%), Positives = 159/388 (41%), Gaps = 54/388 (14%)

Query  254  GFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI  313
             F  LS+A       +      Q    +     P +LI+ P+REL  Q  +  ++F    
Sbjct  242  LFPILSQAYQNGPSAAPAQAGGQFGYGRQRKAYPTSLILAPTRELVSQIFDEARKFA---  298

Query  314  DNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEAD  373
                +R  ++ GG     QL  +E G D++V TPGRL DL+  G+++L  +++L+LDEAD
Sbjct  299  YRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEAD  358

Query  374  GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG  433
             +L  G+   I R+     +        Q ++ SAT    D++ L+   +    ++ +  
Sbjct  359  RMLDMGFEPQIRRIVEG--EDMPHVNDRQTLMFSATFP-RDIQMLARDFLKDYVFLSVGR  415

Query  434  EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK  493
              S  + +   V  V     R         +  D +H    +                  
Sbjct  416  VGSTSENITQKVEYVEDHDKR--------SVLLDILHTHGTSGL----------------  451

Query  494  GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
                            +IF  TK   D+L  + + Q         +F    +HGDR   E
Sbjct  452  ---------------TLIFVETKRMADSLSDFLLNQ---------RFPATAIHGDRTQRE  487

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
            R++ LE F+ G    L+ T VAARG+DI  V +VIN  LP +  +YVHRIGR GRA   G
Sbjct  488  RERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTG  547

Query  614  LAISLVATEKEKVWYHVCSSRGKGCYNT  641
            +A +        V   +     +     
Sbjct  548  IATAFFNRGNRGVVRDLIDLLKEAHQEV  575


 Score = 99.4 bits (246),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 10/116 (9%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + AF+   +   + + ++   +  PT +Q  SIP+++ G D++  A+TGSGKTG F  P+
Sbjct  186  VNAFTNPPLDDHLIENIKLAHYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPI  245

Query  61   IQIVYETLKDQQEGKKGKT----------TIKTGASVLNKWQMNPYDRGSAFAIGS  106
            +   Y+        + G                  +   +     +D    FA  S
Sbjct  246  LSQAYQNGPSAAPAQAGGQFGYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRS  301


>sp|Q5B5E7|RRP3_EMENI ATP-dependent rRNA helicase rrp3 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / 
NRRL 194 / M139) OX=227321 GN=rrp3 PE=3 SV=1
Length=465

 Score = 318 bits (815),  Expect = 1e-99, Method: Composition-based stats.
 Identities = 104/503 (21%), Positives = 183/503 (36%), Gaps = 86/503 (17%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
            +K+ K+LG+  ++    +N        +++  +                 + L++   G 
Sbjct  45   AKSFKELGIIDQLCEACENMGYKAPTPIQSQAIPLAL--------EGRDVIGLAETGSGK  96

Query  266  IVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
                       +      P     L++ P+RELA Q     +     I    +R  +I+G
Sbjct  97   TAAFAL---PMLQALMEAPQTLFGLVLAPTRELAYQISQAFETLGSTIG---VRCAVIVG  150

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            G+    Q   L     I+V TPGRL D + +T   +L  +++L +DEAD LL   + + +
Sbjct  151  GMDMVAQSIALGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLAIDEADRLLDMDFGESL  210

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
            +++   +P      +     + SAT+ S  V+ L    +  P  V +  +     T+   
Sbjct  211  DKIIRILP------RTRHTYLFSATM-STKVESLQRASLSNPVRVSVSSKYQTVSTLQSS  263

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
             + +  K                                         K  Y V  + E 
Sbjct  264  YICIPHKH----------------------------------------KNLYLVYLLNEF  283

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
                AIIF  T  +   +       G         F  + LHG      R   L +F+  
Sbjct  284  AGQSAIIFTTTVHETQRVAFMLRALG---------FGAIPLHGQLSQSARLGALGKFRSR  334

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
                L+ TDVAARG+DI  V  V N  LP + + Y+HR+GR  RA + G+AIS V     
Sbjct  335  SRDILVATDVAARGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVTQYDV  394

Query  625  KVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEF  684
            +VW  +  +  K     ++++D                   ++  +++      + +  F
Sbjct  395  EVWLRIEHALSKKLPEYQVEKDEVMV---------------MSERVAEASRQATIEMKSF  439

Query  685  DGKVTYGQKRAAGGGSYKGHVDI  707
            D K     K+   G   +  +D 
Sbjct  440  DEKKGARGKKFGKGKRSRDDMDQ  462


 Score = 107 bits (268),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 9/110 (8%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +F E+G++ ++ +A E M +  PT IQ+++IPL L G DV+  AETGSGKT AF++P++
Sbjct  46   KSFKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPML  105

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
            Q + E           +T      +   +                   C 
Sbjct  106  QALME---------APQTLFGLVLAPTRELAYQISQAFETLGSTIGVRCA  146


>sp|P0CQ76|DBP2_CRYNJ ATP-dependent RNA helicase DBP2-A OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=DBP2 PE=3 SV=1
Length=540

 Score = 320 bits (821),  Expect = 1e-99, Method: Composition-based stats.
 Identities = 101/422 (24%), Positives = 170/422 (40%), Gaps = 66/422 (16%)

Query  218  IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQV  277
            I   ++         ++                     VA+++   G  +         +
Sbjct  121  IMSEIRRMGFTAPSSIQCQAWPMALS--------GRDLVAIAETGSGKTISFCLPAMVHI  172

Query  278  TQTKFLP--NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
                 L   + P  LI+ P+RELA Q      +F +   + ++R   I GG     Q+  
Sbjct  173  NAQPLLAPGDGPIVLILAPTRELAVQIQTEATKFGQ---SSRIRNTAIYGGAPKGPQIRD  229

Query  336  LENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
            L+ GV+I V TPGRL D++ TGK NL +V +LV+DEAD +L  G+   I ++ +QI    
Sbjct  230  LQRGVEICVATPGRLIDMLETGKTNLKRVTYLVMDEADRMLDMGFEPQIRKIVSQI----  285

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL  455
                  Q ++ SAT    +V++L+   +H    V++   D                    
Sbjct  286  --RPDRQTLLFSATWPK-EVQRLAMDFLHDFIQVNIGSLDLT------------------  324

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRT  515
                           A  N          + +  K+L     +      +  + +IF  T
Sbjct  325  ---------------ANHNVAQHVEVCTDFDKRSKLLSHLEKI----SQENGKVLIFVAT  365

Query  516  KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA  575
            K   D+L ++    G         +  + +HGD++  ER   L  FK G    ++ TDVA
Sbjct  366  KRVADDLTKFLRMDG---------WPALAIHGDKQQAERDWVLAEFKSGRSPIMLATDVA  416

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRG  635
            +RG+D+  + YVIN   P+  ++Y+HRIGR GRA R G + +    +  K    +     
Sbjct  417  SRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNSKAARELVQILR  476

Query  636  KG  637
            + 
Sbjct  477  ES  478


 Score = 103 bits (256),  Expect = 9e-22, Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 44/106 (42%), Gaps = 4/106 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E G    I   +  M +  P+ IQ ++ P+ L G D++  AETGSGKT +F +P 
Sbjct  109  ITTFEEAGFPDYIMSEIRRMGFTAPSSIQCQAWPMALSGRDLVAIAETGSGKTISFCLPA  168

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            +  +      Q     G   I    +   +  +      + F   S
Sbjct  169  MVHI----NAQPLLAPGDGPIVLILAPTRELAVQIQTEATKFGQSS  210


>sp|P0CQ77|DBP2_CRYNB ATP-dependent RNA helicase DBP2-A OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=DBP2 PE=3 SV=1
Length=540

 Score = 320 bits (821),  Expect = 1e-99, Method: Composition-based stats.
 Identities = 101/422 (24%), Positives = 170/422 (40%), Gaps = 66/422 (16%)

Query  218  IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQV  277
            I   ++         ++                     VA+++   G  +         +
Sbjct  121  IMSEIRRMGFTAPSSIQCQAWPMALS--------GRDLVAIAETGSGKTISFCLPAMVHI  172

Query  278  TQTKFLP--NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
                 L   + P  LI+ P+RELA Q      +F +   + ++R   I GG     Q+  
Sbjct  173  NAQPLLAPGDGPIVLILAPTRELAVQIQTEATKFGQ---SSRIRNTAIYGGAPKGPQIRD  229

Query  336  LENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
            L+ GV+I V TPGRL D++ TGK NL +V +LV+DEAD +L  G+   I ++ +QI    
Sbjct  230  LQRGVEICVATPGRLIDMLETGKTNLKRVTYLVMDEADRMLDMGFEPQIRKIVSQI----  285

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL  455
                  Q ++ SAT    +V++L+   +H    V++   D                    
Sbjct  286  --RPDRQTLLFSATWPK-EVQRLAMDFLHDFIQVNIGSLDLT------------------  324

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRT  515
                           A  N          + +  K+L     +      +  + +IF  T
Sbjct  325  ---------------ANHNVAQHVEVCTDFDKRSKLLSHLEKI----SQENGKVLIFVAT  365

Query  516  KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA  575
            K   D+L ++    G         +  + +HGD++  ER   L  FK G    ++ TDVA
Sbjct  366  KRVADDLTKFLRMDG---------WPALAIHGDKQQAERDWVLAEFKSGRSPIMLATDVA  416

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRG  635
            +RG+D+  + YVIN   P+  ++Y+HRIGR GRA R G + +    +  K    +     
Sbjct  417  SRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNSKAARELVQILR  476

Query  636  KG  637
            + 
Sbjct  477  ES  478


 Score = 103 bits (256),  Expect = 9e-22, Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 44/106 (42%), Gaps = 4/106 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E G    I   +  M +  P+ IQ ++ P+ L G D++  AETGSGKT +F +P 
Sbjct  109  ITTFEEAGFPDYIMSEIRRMGFTAPSSIQCQAWPMALSGRDLVAIAETGSGKTISFCLPA  168

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            +  +      Q     G   I    +   +  +      + F   S
Sbjct  169  MVHI----NAQPLLAPGDGPIVLILAPTRELAVQIQTEATKFGQSS  210


>sp|Q5R4I9|DDX5_PONAB Probable ATP-dependent RNA helicase DDX5 
OS=Pongo abelii OX=9601 GN=DDX5 PE=2 SV=1
Length=614

 Score = 323 bits (827),  Expect = 1e-99, Method: Composition-based stats.
 Identities = 107/470 (23%), Positives = 179/470 (38%), Gaps = 72/470 (15%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
             N  +      +   +  Q       ++           +         V +++   G  
Sbjct  94   LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLD--------MVGVAQTGSGKT  145

Query  267  VKSQHSGNAQVTQTKFLP--NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
            +         +    FL   + P  L++ P+RELA+Q         +Y    +L+   I 
Sbjct  146  LSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVA---AEYCRACRLKSTCIY  202

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG     Q+  LE GV+I + TPGRL D +  GK NL +  +LVLDEAD +L  G+   I
Sbjct  203  GGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQI  262

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG-EDSVPDTVHH  443
             ++ +QI          Q ++ SAT    +V++L+E  +     +++   E S    +  
Sbjct  263  RKIVDQI------RPDRQTLMWSATWPK-EVRQLAEDFLKDYIHINIGALELSANHNILQ  315

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
            +V   +                                     +  K  K    +  I  
Sbjct  316  IVDVCH-------------------------------------DVEKDEKLIRLMEEIMS  338

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
             K ++ I+F  TK  CD L +   + G         +  + +HGD+   ER   L  FK 
Sbjct  339  EKENKTIVFVETKRRCDELTRKMRRDG---------WPAMGIHGDKSQQERDWVLNEFKH  389

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
            G    LI TDVA+RG+D+  V +VIN   P+  ++Y+HRIGR  R+ + G A +      
Sbjct  390  GKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN  449

Query  624  EKVWYHVCSSRGKGCYN-----TRLKEDGGCTIWYNEMQLLSEIEEHLNC  668
             K    + S   +          +L ED G         +  +  +  + 
Sbjct  450  IKQVSDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSA  499


 Score = 88.3 bits (217),  Expect = 9e-17, Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 41/94 (44%), Gaps = 4/94 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E      +   +   ++  PT IQA+  P+ L G D++  A+TGSGKT ++ +P 
Sbjct  93   VLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPA  152

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
            I  +      Q   ++G   I    +   +    
Sbjct  153  IVHI----NHQPFLERGDGPICLVLAPTRELAQQ  182


>sp|A1CXK7|DED1_NEOFI ATP-dependent RNA helicase ded1 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=ded1 
PE=3 SV=1
Length=676

 Score = 325 bits (832),  Expect = 1e-99, Method: Composition-based stats.
 Identities = 110/434 (25%), Positives = 169/434 (39%), Gaps = 81/434 (19%)

Query  208  NGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIV  267
            NG+DL    +         LFP                           A    P    V
Sbjct  226  NGRDLMACAQTGSGKTGGFLFP-----------------------ILSQAFQTGPSA--V  260

Query  268  KSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
             +Q SG  Q    +     P +LI+ P+REL  Q  +  ++F        +R  ++ GG 
Sbjct  261  PAQASG--QFGYGRQRKAYPTSLILAPTRELVSQIFDEARKFA---YRSWVRPCVVYGGA  315

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM  387
                QL  +E G D++V TPGRL DL+  G+++L  +++LVLDEAD +L  G+   I R+
Sbjct  316  DIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLVLDEADRMLDMGFEPQIRRI  375

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
                 +   +    Q ++ SAT    D++ L+   +    ++ +    S  + +   V  
Sbjct  376  VEG--EDMPNVNERQTLMFSATFP-RDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEY  432

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
            V     R         +  D +H    +                                
Sbjct  433  VEDHDKR--------SVLLDILHTHGTSGL------------------------------  454

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
              +IF  TK   D L  + + Q         +F    +HGDR   ER++ LE F+ G   
Sbjct  455  -TLIFVETKRMADALSDFLLNQ---------RFPATAIHGDRTQRERERALEMFRSGRCP  504

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             L+ T VAARG+DI  V +VIN  LP +  +YVHRIGR GRA   G+A +        V 
Sbjct  505  ILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVV  564

Query  628  YHVCSSRGKGCYNT  641
              +     +     
Sbjct  565  RELIDLLKEAHQEV  578


 Score = 96.4 bits (238),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 25/116 (22%), Positives = 48/116 (41%), Gaps = 10/116 (9%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + AF+   +   +   ++   +  PT +Q  SIP+++ G D++  A+TGSGKTG F  P+
Sbjct  189  VNAFTNPPLDDHLISNIKLARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPI  248

Query  61   IQIVYETLKDQQEG----------KKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            +   ++T                 ++         +   +     +D    FA  S
Sbjct  249  LSQAFQTGPSAVPAQASGQFGYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRS  304


>sp|P96614|CSHA_BACSU DEAD-box ATP-dependent RNA helicase CshA 
OS=Bacillus subtilis (strain 168) OX=224308 GN=cshA PE=1 SV=2
Length=494

 Score = 319 bits (817),  Expect = 1e-99, Method: Composition-based stats.
 Identities = 106/467 (23%), Positives = 198/467 (42%), Gaps = 75/467 (16%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
            +   +D  L+ ++   +       A  ++   +      ++         +  ++   G 
Sbjct  2    TITFQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKD--------VIGQAQTGTGK  53

Query  266  IVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
                   G   V +        +A+++ P+RELA Q    + +  +   + + + L I G
Sbjct  54   TAAF---GIPLVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQ---DKRAKVLPIYG  107

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            G     Q+  L+   +I+VGTPGRL D ++   + L+ V  +V+DEAD +L+ G+ D I 
Sbjct  108  GQDIGRQIRALKKNPNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIE  167

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
             + + +P         Q ++ SAT+ +  +K+++E+ M  P  V +K ++     +    
Sbjct  168  SILSNVP------SEHQTLLFSATMPAP-IKRIAERFMTEPEHVKVKAKEMTVSNIQQFY  220

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
            + V  +                                         K +   R +    
Sbjct  221  LEVQERK----------------------------------------KFDTLTRLLDIQS  240

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             + AI+F RTK   D L +    +G         ++   +HGD    +R   L +FK+G 
Sbjct  241  PELAIVFGRTKRRVDELAEALNLRG---------YAAEGIHGDLTQAKRMVALRKFKEGA  291

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+DI GV +V N  +P + ++YVHRIGR GRA + G+A++ +   ++ 
Sbjct  292  IEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKS  351

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQ  672
            +   +  +  +     R+KE         + Q+     E L  TIS+
Sbjct  352  MLRAIEQTTKRKM--DRMKEPTLDEALEGQQQVT---VERLRTTISE  393


 Score = 101 bits (251),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 41/70 (59%), Gaps = 0/70 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +  +  ++ +A+  M +   T IQA++IPL L   DV+  A+TG+GKT AF IP+++
Sbjct  4   TFQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVE  63

Query  63  IVYETLKDQQ  72
            +     + Q
Sbjct  64  KINPESPNIQ  73


>sp|Q4WP13|DED1_ASPFU ATP-dependent RNA helicase ded1 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=ded1 PE=3 SV=1
Length=674

 Score = 324 bits (831),  Expect = 1e-99, Method: Composition-based stats.
 Identities = 101/388 (26%), Positives = 159/388 (41%), Gaps = 54/388 (14%)

Query  254  GFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI  313
             F  LS+A            + Q    +     P +LI+ P+REL  Q  +  ++F    
Sbjct  243  LFPILSQAFQTGPSPVPAQASGQFGYGRQRKAYPTSLILAPTRELVSQIFDEARKFA---  299

Query  314  DNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEAD  373
                +R  ++ GG     QL  +E G D++V TPGRL DL+  G+++L  +++LVLDEAD
Sbjct  300  YRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLVLDEAD  359

Query  374  GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG  433
             +L  G+   I R+     +   +    Q ++ SAT    D++ L+   +    ++ +  
Sbjct  360  RMLDMGFEPQIRRIVEG--EDMPNVNERQTLMFSATFP-RDIQMLARDFLKDYVFLSVGR  416

Query  434  EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK  493
              S  + +   V  V     R         +  D +H    +                  
Sbjct  417  VGSTSENITQKVEYVEDHDKR--------SVLLDILHTHGTSGL----------------  452

Query  494  GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
                            +IF  TK   D L  + + Q         +F    +HGDR   E
Sbjct  453  ---------------TLIFVETKRMADALSDFLLNQ---------RFPATAIHGDRTQRE  488

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
            R++ LE F+ G    L+ T VAARG+DI  V +VIN  LP +  +YVHRIGR GRA   G
Sbjct  489  RERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTG  548

Query  614  LAISLVATEKEKVWYHVCSSRGKGCYNT  641
            +A +        V   +     +     
Sbjct  549  IATAFFNRSNRGVVRELIDLLKEAHQEV  576


 Score = 97.1 bits (240),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 25/116 (22%), Positives = 48/116 (41%), Gaps = 10/116 (9%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + AF+   +   +   ++   +  PT +Q  SIP+++ G D++  A+TGSGKTG F  P+
Sbjct  187  VNAFTNPPLDDHLISNIKLARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPI  246

Query  61   IQIVYETLKDQQEG----------KKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            +   ++T                 ++         +   +     +D    FA  S
Sbjct  247  LSQAFQTGPSPVPAQASGQFGYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRS  302


>sp|Q9C8J1|RH34_ARATH DEAD-box ATP-dependent RNA helicase 34 OS=Arabidopsis 
thaliana OX=3702 GN=RH34 PE=2 SV=2
Length=392

 Score = 315 bits (807),  Expect = 1e-99, Method: Composition-based stats.
 Identities = 110/437 (25%), Positives = 182/437 (42%), Gaps = 66/437 (15%)

Query  212  LGLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKS  269
              L FE    +K    F    + +  L+  +++G ++     +   V + K  D      
Sbjct  8    ENLVFETTKGIKPIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQ  67

Query  270  QHSGNAQVTQTKFLP------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLI  323
              +G   +                + L++ PSRELA QT   I+    + +   ++    
Sbjct  68   SGTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAHTN---IQAHAC  124

Query  324  IGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDF  383
            IGG +  + +  LE GV  V GTPGR+ D++  G L    V+ LVLDE+D +LS+G  D 
Sbjct  125  IGGKSIGEDIKKLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQ  184

Query  384  INRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHH  443
            I  ++  +P        +QV + SATL   ++ +++EK M  P  + +K ++   + +  
Sbjct  185  IYDVYRALPH------DIQVCLISATLP-QEILEMTEKFMTDPVRILVKPDELTLEGIKQ  237

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
              V V+ +                                         K +        
Sbjct  238  YYVDVDKEE---------------------------------------WKFDTLCDLYGR  258

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
              ++QAIIFC T+   D L +           +   F    +HGD++  ER   + +F+ 
Sbjct  259  LTINQAIIFCNTRQKVDWLTEKM---------RSSNFIVSSMHGDKRQKERDDIMNQFRS  309

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
               R LI +DV ARGID+  V +VIN  +P+  + Y+HRIGR GR  R G+AI+ V +  
Sbjct  310  FKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSD  369

Query  624  EKVWYHVCSSRGKGCYN  640
             K    +    G     
Sbjct  370  MKDLKDIERHYGTKIRE  386


 Score = 91.0 bits (224),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 32/141 (23%), Positives = 58/141 (41%), Gaps = 2/141 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F +MG+  ++ + V +  +  P++IQ  ++  IL G DV+  A++G+GKT   +I V
Sbjct  21   IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISV  80

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120
             QIV  + +  Q      +      +      +  +    A A    G        K   
Sbjct  81   CQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAHTNIQAHAC-IGGKSIGEDIKKLER  139

Query  121  GCRATKGLMKGKHYYEVSCHD  141
            G  A  G   G+ Y  +    
Sbjct  140  GVHAVSG-TPGRVYDMIKRGS  159


>sp|A1D405|RRP3_NEOFI ATP-dependent rRNA helicase rrp3 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=rrp3 
PE=3 SV=1
Length=472

 Score = 318 bits (814),  Expect = 1e-99, Method: Composition-based stats.
 Identities = 111/503 (22%), Positives = 184/503 (37%), Gaps = 87/503 (17%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K+ KDLG+  ++    +         ++   +                 + L++   G  
Sbjct  52   KSFKDLGIIDQLCEACETMGYKAPTPIQAESIPLAL--------QGRDLIGLAETGSGKT  103

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
                      +      P +   LI+ P+RELA Q   + +     I+   +R  +I+GG
Sbjct  104  AAFALPI---LQALMEKPQSFFGLILAPTRELAFQISKSFESLGSTIN---VRCAVIVGG  157

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            +    Q   L     I+V TPGRL D + +T   +L  +++LV+DEAD LL   +   ++
Sbjct  158  MDMVSQSIALGKKPHIIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLD  217

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED-SVPDTVHHV  444
            ++   +P      +  +  + SAT+ S  V+ L    +  P  V +         T+   
Sbjct  218  KILKVLP------RERRTFLFSATM-SSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQS  270

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
             + +  K                                         K  Y V  + E 
Sbjct  271  YLFLPHKH----------------------------------------KDIYLVYLLNEF  290

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
                AIIF RT  +   +       G         F  + LHG      R   L +F+  
Sbjct  291  VGQSAIIFTRTVHETQRISFLLRSLG---------FGAIPLHGQLSQSARLGALGKFRSR  341

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
                L+ TDVAARG+DI  V  V+N  LP + + YVHR+GR  RA + G+AIS V     
Sbjct  342  SRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDV  401

Query  625  KVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEF  684
            ++W  +  + GK      L++D                   L   + + +    V +  F
Sbjct  402  EIWLRIEGALGKKLKEYELEKDEVMV---------------LAERVGEAQRQAIVEMKNF  446

Query  685  DGKVTYGQKRAAGGGSYKGHVDI  707
            D K     K+   G   +  +D 
Sbjct  447  DEKRGTKAKKFGKGKRSRDEMDQ  469


 Score = 108 bits (270),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 9/110 (8%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +F ++G++ ++ +A E M +  PT IQAESIPL L G D++  AETGSGKT AF++P++
Sbjct  52   KSFKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPIL  111

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
            Q + E         K ++      +   +          +     +  C 
Sbjct  112  QALME---------KPQSFFGLILAPTRELAFQISKSFESLGSTINVRCA  152


>sp|A1CH78|DED1_ASPCL ATP-dependent RNA helicase ded1 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=ded1 PE=3 SV=1
Length=681

 Score = 324 bits (831),  Expect = 1e-99, Method: Composition-based stats.
 Identities = 112/434 (26%), Positives = 171/434 (39%), Gaps = 81/434 (19%)

Query  208  NGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIV  267
            NG+DL    +         LFP                           A  K P    V
Sbjct  225  NGRDLMACAQTGSGKTGGFLFP-----------------------ILSQAFQKGPSA--V  259

Query  268  KSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
             +Q SG  Q++  +     P +LI+ P+REL  Q  +  ++F        +R  ++ GG 
Sbjct  260  PAQASG--QMSYGRQRKAYPTSLILAPTRELVSQIFDEARKFA---YRSWVRPCVVYGGA  314

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM  387
                QL  +E G D++V TPGRL DL+  G+++L  + +LVLDEAD +L  G+   I R+
Sbjct  315  DIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNINYLVLDEADRMLDMGFEPQIRRI  374

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
                 +        Q ++ SAT    D++ L+   +    ++ +    S  + +   V  
Sbjct  375  VEG--EDMPSVNERQTLMFSATFP-RDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEY  431

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
            V        E + K  +  D +H    +                                
Sbjct  432  V--------EDVDKRSVLLDILHTHGTSGL------------------------------  453

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
              +IF  TK   D L  + I Q         +F    +HGDR   ER++ LE F+     
Sbjct  454  -TLIFVETKRMADALSDFLINQ---------RFPATAIHGDRTQRERERALEMFRSARCP  503

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             L+ T VAARG+DI  V +VIN  LP +  +YVHRIGR GRA   G+A +        V 
Sbjct  504  ILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVV  563

Query  628  YHVCSSRGKGCYNT  641
              +     +     
Sbjct  564  RELIDLLKEAHQEV  577


 Score = 95.6 bits (236),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 24/116 (21%), Positives = 47/116 (41%), Gaps = 10/116 (9%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + AF+   +   +   ++   +  PT +Q  SIP+++ G D++  A+TGSGKTG F  P+
Sbjct  188  VNAFTNPPLDDHLISNIKLARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPI  247

Query  61   IQIVYETLKDQQEG----------KKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            +   ++                  ++         +   +     +D    FA  S
Sbjct  248  LSQAFQKGPSAVPAQASGQMSYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRS  303


>sp|Q9CWX9|DDX47_MOUSE Probable ATP-dependent RNA helicase DDX47 
OS=Mus musculus OX=10090 GN=Ddx47 PE=2 SV=2
Length=455

 Score = 317 bits (813),  Expect = 1e-99, Method: Composition-based stats.
 Identities = 105/500 (21%), Positives = 188/500 (38%), Gaps = 73/500 (15%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
            +K  KDLG+   +              ++   +                 + L++   G 
Sbjct  23   TKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLAL--------QGRDIIGLAETGSGK  74

Query  266  IVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
                       +      P    AL++ P+RELA Q     +       +  ++  +I+G
Sbjct  75   TGAFALPI---LNALLETPQRLFALVLTPTRELAFQISEQFEALG---SSIGVQCAVIVG  128

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            G+ +  Q   L     IV+ TPGRL D + +T   NL  +++LV+DEAD +L+  +   +
Sbjct  129  GIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEV  188

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
            +++   IP      +  +  + SAT+    V+KL    +  P    +  +    + +   
Sbjct  189  DKILKVIP------RDRKTFLFSATMTK-KVQKLQRAALKNPVKCAVSSKYQTVEKLQQY  241

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
             + +  K                                         K  Y V  + E 
Sbjct  242  YLFIPSK----------------------------------------FKDTYLVYILNEL  261

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
              +  +IFC T  +           G         F+ + LHG     +R  +L +FK  
Sbjct  262  AGNSFMIFCSTCNNTQRTALLLRNLG---------FTAIPLHGQMSQSKRLGSLNKFKAK  312

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
                L+ TDVA+RG+DI  V  V+N  +P   ++Y+HR+GR  RA R G AI+ V     
Sbjct  313  ARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDV  372

Query  625  KVWYHVCSSRGKGC--YNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVD  682
            +++  +    GK    + T+ +E    T   NE Q  + +E   +    + + +     D
Sbjct  373  ELFQRIEHLIGKKLPVFPTQDEEVMMLTERVNEAQRFARMELREHGEKKKRKREDAGDDD  432

Query  683  EFDGKVTYGQKRAAGGGSYK  702
            + +G +    K A G    +
Sbjct  433  DKEGAIGVRNKVAGGKMKKR  452


 Score = 102 bits (255),  Expect = 8e-22, Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 9/110 (8%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F ++GV   + +A +++ W  PT IQ E+IPL L G D++  AETGSGKTGAF++P++
Sbjct  24   KTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL  83

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
              + ET          +       +   +      ++  A        C 
Sbjct  84   NALLET---------PQRLFALVLTPTRELAFQISEQFEALGSSIGVQCA  124


>sp|Q6FP38|DBP1_CANGA ATP-dependent RNA helicase DBP1 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP1 PE=3 SV=1
Length=604

 Score = 322 bits (825),  Expect = 2e-99, Method: Composition-based stats.
 Identities = 92/355 (26%), Positives = 147/355 (41%), Gaps = 55/355 (15%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P AL++ P+RELA Q  +  K   KY     ++  ++ GG     Q+  ++ G +++V T
Sbjct  222  PSALVLAPTRELAIQIFDEAK---KYTYRSWVKPYVVYGGAPIGQQMRDMDRGCNLLVAT  278

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL+DL+  GK++L  V++LVLDEAD +L  G+   I  +              Q ++ 
Sbjct  279  PGRLNDLLERGKISLVNVKYLVLDEADRMLDMGFEPQIRHIVEDCD--MPSVNDRQTLMF  336

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT    +++ L+   +    ++ +    S  + +   V+ V                  
Sbjct  337  SATFP-REIQHLARDFLKDYIFLSVGRVGSTSENIQQKVLFVE-----------------  378

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                                      K    +  +        ++F  TK   D L  + 
Sbjct  379  -----------------------DYDKNSALLDILINEIDGLTLVFVETKRMADQLTDFL  415

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
            I Q          F    +HGDR   ER++ L  F+ G    L+ T VAARG+DI  V  
Sbjct  416  IVQ---------NFKATAIHGDRTQAERERALHAFRNGIANILVATAVAARGLDIPNVTN  466

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
            VIN  LP +  +YVHRIGR GRA  +G+A S   +    +   +     +     
Sbjct  467  VINYDLPTDIDDYVHRIGRTGRAGNVGVATSFFNSNSMNIAKELMDLLTEANQEV  521


 Score = 94.0 bits (232),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 23/112 (21%), Positives = 44/112 (39%), Gaps = 6/112 (5%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F    +   + + VE  ++  PT +Q  SIP++    D++  A+TGSGKTG F  PV
Sbjct  137  ITEFKSPPLDELLLENVELANFSKPTPVQKYSIPIVTKNRDLMACAQTGSGKTGGFLFPV  196

Query  61   IQIVYETLKDQQEGKKGKT------TIKTGASVLNKWQMNPYDRGSAFAIGS  106
            +  ++             +            +   +  +  +D    +   S
Sbjct  197  LSELFLNGPAPLPEHTRHSYMRKCYPSALVLAPTRELAIQIFDEAKKYTYRS  248


>sp|P46942|DB10_NICSY ATP-dependent RNA helicase-like protein 
DB10 OS=Nicotiana sylvestris OX=4096 PE=2 SV=1
Length=607

 Score = 322 bits (825),  Expect = 2e-99, Method: Composition-based stats.
 Identities = 108/408 (26%), Positives = 171/408 (42%), Gaps = 66/408 (16%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN-APKALIVEPSRELAEQTLNN  305
                     VA++K   G  +         + Q +  P   P  L++ P+RELA Q    
Sbjct  177  PIALQGRDIVAIAKTGSGKTLGYLMPAFIHLQQRRKNPQLGPTILVLSPTRELATQIQAE  236

Query  306  IKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVR  365
              +F K   + ++    + GG     QL  L  GVDIVV TPGRL+D++   +++L QV 
Sbjct  237  AVKFGK---SSRISCTCLYGGAPKGPQLRELSRGVDIVVATPGRLNDILEMRRVSLGQVS  293

Query  366  FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF  425
            +LVLDEAD +L  G+   I ++  ++P       + Q ++ +AT     V+K++  ++  
Sbjct  294  YLVLDEADRMLDMGFEPQIRKIVKEVPV------QRQTLMYTATWPKG-VRKIAADLLVN  346

Query  426  PTWVDLKGEDSV---PDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSP  482
               V++   D +        H+ V +  +  R  E++ +S                    
Sbjct  347  SVQVNIGNVDELVANKSITQHIEVVLPMEKQRRVEQILRS--------------------  386

Query  483  EMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSC  542
                                +    + IIFC TK  CD L +   +           F  
Sbjct  387  --------------------KEPGSKIIIFCSTKKMCDQLSRNLTR----------NFGA  416

Query  543  VCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHR  602
              +HGD+   ER   L +F+ G    L+ TDVAARG+DI  +  VIN   P   ++YVHR
Sbjct  417  AAIHGDKSQGERDYVLSQFRAGRSPVLVATDVAARGLDIKDIRVVINYDFPTGIEDYVHR  476

Query  603  IGRVGRAERMGLAISLVATEKEKVWYHVCSSR--GKGCYNTRLKEDGG  648
            IGR GRA   GLA +  + +  K    +         C  T L++   
Sbjct  477  IGRTGRAGASGLAYTFFSDQDSKHALDLVKVLEGANQCVPTELRDMAS  524


 Score = 105 bits (261),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 5/106 (5%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F   G   EI + + +  +  PT IQA+S P+ L G D++  A+TGSGKT  + +P 
Sbjct  144  LTSFEATGFPSEIVREMHQAGFSAPTPIQAQSWPIALQGRDIVAIAKTGSGKTLGYLMPA  203

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
               + +  K+ Q G           S   +           F   S
Sbjct  204  FIHLQQRRKNPQLG-----PTILVLSPTRELATQIQAEAVKFGKSS  244


>sp|A5DQS0|DED1_PICGU ATP-dependent RNA helicase DED1 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DED1 PE=3 
SV=3
Length=637

 Score = 323 bits (827),  Expect = 2e-99, Method: Composition-based stats.
 Identities = 96/355 (27%), Positives = 150/355 (42%), Gaps = 55/355 (15%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P AL++ P+REL  Q     K+F        +R  ++ GG     Q+  L+ G D++V T
Sbjct  253  PTALVMAPTRELVSQIFEEAKKFS---YRSWVRPCVVYGGADIGTQIRNLDRGCDLLVAT  309

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL DL+  G+++LS +++LVLDEAD +L  G+   I  +  +        +  Q ++ 
Sbjct  310  PGRLKDLLERGRVSLSNIKYLVLDEADRMLDMGFEPQIRHIVQECD--MPGVESRQTLMF  367

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT    D++ L+   +    ++ +    S  + +   V+ V                  
Sbjct  368  SATFP-RDIQMLARDFLKDYIFLSVGRVGSTSENITQKVLYVEDDE--------------  412

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                                      K    +  +  +     IIF  TK   DNL  + 
Sbjct  413  --------------------------KKSVLLDLLSANDNGLTIIFTETKRMADNLADFL  446

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
              QG         F    +HGDR  +ER++ L  FK G    L+ T VAARG+DI  V +
Sbjct  447  YDQG---------FPATAIHGDRSQYEREKALAAFKSGTAPILVATAVAARGLDIPNVSH  497

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
            V+N  LP +  +YVHRIGR GRA  +G+A +        V   +     +     
Sbjct  498  VVNYDLPGDIDDYVHRIGRTGRAGNVGIATAFFNRNNRNVVKGMIELLSEANQEV  552


 Score = 95.2 bits (235),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 34/148 (23%), Positives = 59/148 (40%), Gaps = 17/148 (11%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++AF+   + P I + ++   +  PT +Q  S+P++  G D++  A+TGSGKTG F  PV
Sbjct  168  ISAFTAPPLDPLIVENIKLSRFTKPTPVQKYSVPIVASGRDLMACAQTGSGKTGGFLFPV  227

Query  61   IQIVYETLKDQQEGKKGK------TTIKTGASVLNKWQMNPYDRGSAFAIGS--------  106
            +   Y    D     +G              +   +     ++    F+  S        
Sbjct  228  LSESYMNGPDAVPESQGAFSSHKVHPTALVMAPTRELVSQIFEEAKKFSYRSWVRPCVVY  287

Query  107  DGLCCQSREVKEWHGC---RATKGLMKG  131
             G    ++      GC    AT G +K 
Sbjct  288  GGADIGTQIRNLDRGCDLLVATPGRLKD  315


>sp|Q0CLJ6|DED1_ASPTN ATP-dependent RNA helicase ded1 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=ded1 
PE=3 SV=1
Length=674

 Score = 324 bits (829),  Expect = 3e-99, Method: Composition-based stats.
 Identities = 99/388 (26%), Positives = 159/388 (41%), Gaps = 54/388 (14%)

Query  254  GFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI  313
             F  LS+A       +      Q+   +     P +LI+ P+REL  Q  +  ++F    
Sbjct  241  LFPILSQAFQNGPSPTPAPAGGQLGYGRQRKAYPTSLILAPTRELVSQIFDEARKFA---  297

Query  314  DNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEAD  373
                +R  ++ GG     QL  +E G D++V TPGRL DL+  G+++L  +++L+LDEAD
Sbjct  298  YRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEAD  357

Query  374  GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG  433
             +L  G+   I R+     +        Q ++ SAT    D++ L+   +    ++ +  
Sbjct  358  RMLDMGFEPQIRRIVEG--EDMPHVNDRQTLMFSATFP-RDIQMLARDFLKDYVFLSVGR  414

Query  434  EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK  493
              S  + +   V  V     R         +  D +H    +                  
Sbjct  415  VGSTSENITQKVEYVEDHDKR--------SVLLDILHTHGTSGL----------------  450

Query  494  GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
                            +IF  TK   D+L  + + Q         +F    +HGDR   E
Sbjct  451  ---------------TLIFVETKRMADSLSDFLLNQ---------RFPATAIHGDRTQRE  486

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
            R++ LE F+ G    L+ T VAA G+DI  V +VIN  LP +  +YVHRIGR GRA   G
Sbjct  487  RERALEMFRSGRCPILVATAVAASGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTG  546

Query  614  LAISLVATEKEKVWYHVCSSRGKGCYNT  641
            +A +        V   +     +     
Sbjct  547  IATAFFNRGNRGVVRDLIDLLKEAHQEV  574


 Score = 97.5 bits (241),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 46/116 (40%), Gaps = 10/116 (9%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + AF+   +   +   +    +L PT +Q  SIP+++ G D++  A+TGSGKTG F  P+
Sbjct  185  VNAFTNPPLDDHLISNIALARYLTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPI  244

Query  61   IQIVYETLKDQQEGKKGKT----------TIKTGASVLNKWQMNPYDRGSAFAIGS  106
            +   ++          G                  +   +     +D    FA  S
Sbjct  245  LSQAFQNGPSPTPAPAGGQLGYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRS  300


>sp|Q6CH58|RRP3_YARLI ATP-dependent rRNA helicase RRP3 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=RRP3 
PE=3 SV=1
Length=480

 Score = 317 bits (813),  Expect = 3e-99, Method: Composition-based stats.
 Identities = 110/494 (22%), Positives = 192/494 (39%), Gaps = 80/494 (16%)

Query  196  LDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGF  255
            +++D+   + +K  KDLG+   I    +         ++   + +               
Sbjct  54   VEVDESEEQ-TKTFKDLGVIDSICETCEELKFTKPTPIQAQSIPYAL--------EGRDI  104

Query  256  VALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDN  315
            + L++   G            +      P     +++ P+RELA Q     +     +  
Sbjct  105  IGLAQTGSGKTAAF---AIPVLQSLYENPQPLYCVVLAPTRELAYQISETFEALGSAMG-  160

Query  316  PKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADG  374
              LR  +++GG+    Q   L     ++V TPGRL D + +T   +L  ++FLV+DEAD 
Sbjct  161  --LRTAVVVGGMNMMTQAVALSKKPHVIVATPGRLVDHLENTKGFSLRTLKFLVMDEADR  218

Query  375  LLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE  434
            LL   +   ++++   IP      ++    + SAT+ S  V+KL    +  P  V +  +
Sbjct  219  LLDMEFGPSLDKILKVIP------RQRNTYLFSATMTS-KVEKLQRASLVDPVRVAVSTK  271

Query  435  DSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG  494
                D +   +V    K                                         K 
Sbjct  272  YQTADNLLQYMVFCPFKH----------------------------------------KD  291

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
             + V  + E+  +  IIF RTK D   +       G         +  + LHGD     R
Sbjct  292  THLVYLVSENAGNSMIIFARTKSDTQRISLLLRNLG---------YGAIPLHGDLSQTAR  342

Query  555  KQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGL  614
               L +FK G    LI TDVA+RG+DI  V  VIN  +P + ++Y+HR+GR  RA R G 
Sbjct  343  LGALNKFKSGSRNILIATDVASRGLDIPAVDLVINYDIPSDSKSYIHRVGRTARAGRAGK  402

Query  615  AISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVE  674
            +++LV+    +++  +  + GK   +  L+ +         M     + E     I +++
Sbjct  403  SVALVSQYDLELYLRIEGALGKKLDSYPLESEAV-------MLFSERVAEASRAAIQEMK  455

Query  675  -PDIKVPVDEFDGK  687
              D      +FD K
Sbjct  456  GEDGTKKRSKFDKK  469


 Score = 104 bits (259),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 9/106 (8%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F ++GV+  I +  EE+ +  PT IQA+SIP  L G D++  A+TGSGKT AF+IPV+
Sbjct  64   KTFKDLGVIDSICETCEELKFTKPTPIQAQSIPYALEGRDIIGLAQTGSGKTAAFAIPVL  123

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            Q +YE           +       +   +      +   A      
Sbjct  124  QSLYEN---------PQPLYCVVLAPTRELAYQISETFEALGSAMG  160


>sp|Q4WJE9|RRP3_ASPFU ATP-dependent rRNA helicase rrp3 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC 
A1100 / Af293) OX=330879 GN=rrp3 PE=3 SV=1
Length=472

 Score = 317 bits (812),  Expect = 3e-99, Method: Composition-based stats.
 Identities = 111/503 (22%), Positives = 185/503 (37%), Gaps = 87/503 (17%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K+ KDLG+  ++    +         ++   +                 + L++   G  
Sbjct  52   KSFKDLGIIDQLCEACETMGYKAPTPIQAESIPLAL--------QGRDLIGLAETGSGKT  103

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
                      +      P +   LI+ P+RELA Q   + +     I+   +R  +I+GG
Sbjct  104  AAFALPI---LQALMENPQSFFGLILAPTRELAFQISKSFESLGSTIN---VRCAVIVGG  157

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            +    Q   L     I+V TPGRL D + +T   +L  +++LV+DEAD LL   +   ++
Sbjct  158  MDMVSQSIALGKKPHIIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLD  217

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED-SVPDTVHHV  444
            ++   +P      +  +  + SAT+ S  V+ L    +  P  V +         T+   
Sbjct  218  KILKVLP------RERRTFLFSATM-SSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQS  270

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
             + +  K                                         K  Y V  + E 
Sbjct  271  YLFLPHKH----------------------------------------KDIYLVYLLNEF  290

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
                 IIF RT  +   +       G         F  + LHG      R   L +F+  
Sbjct  291  VGQSTIIFTRTVHETQRISFLLRSLG---------FGAIPLHGQLSQSARLGALGKFRSR  341

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
                L+ TDVAARG+DI  V  V+N  LP + + YVHR+GR  RA + G+AIS V     
Sbjct  342  SRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDV  401

Query  625  KVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEF  684
            ++W  +  + GK      L++D            +  + E +     Q   ++K     F
Sbjct  402  EIWLRIEGALGKKLKEYELEKD-----------EVMVLAERVGEAQRQAIMEMKN----F  446

Query  685  DGKVTYGQKRAAGGGSYKGHVDI  707
            D K     K+   G   +  +D 
Sbjct  447  DEKRGTKAKKFGKGKRSRDEMDQ  469


 Score = 107 bits (266),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 9/110 (8%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +F ++G++ ++ +A E M +  PT IQAESIPL L G D++  AETGSGKT AF++P++
Sbjct  52   KSFKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPIL  111

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
            Q + E           ++      +   +          +     +  C 
Sbjct  112  QALMEN---------PQSFFGLILAPTRELAFQISKSFESLGSTINVRCA  152


>sp|A7TKR8|DED1_VANPO ATP-dependent RNA helicase DED1 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=DED1 PE=3 SV=1
Length=650

 Score = 322 bits (826),  Expect = 3e-99, Method: Composition-based stats.
 Identities = 97/370 (26%), Positives = 156/370 (42%), Gaps = 63/370 (17%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P AL++ P+RELA Q  +  K   K+     +R  ++ GG     Q+  L  G D++V T
Sbjct  244  PTALVLAPTRELATQIYDEAK---KFTYRSWVRPTVVYGGSDIGSQIRDLSRGCDLLVAT  300

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL DL+  G+++L+ V++LVLDEAD +L  G+   I ++ +            Q ++ 
Sbjct  301  PGRLSDLLERGRVSLANVKYLVLDEADRMLDMGFEPQIRQIVDGCD--MPPVGERQTLMF  358

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT    D++ L+   +    ++ +    S  + +   ++ V                  
Sbjct  359  SATFPD-DIQHLARDFLSDYIFLSVGKVGSTSENITQRILYVE-----------------  400

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                                    + K    +  +        +IF  TK   D L  + 
Sbjct  401  -----------------------DMDKKSTLLDLLSASNDGLTLIFVETKRMADELTDFL  437

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
            I Q          F    +HGDR   ER++ L  FK G+   L+ T VAARG+DI  V +
Sbjct  438  IMQ---------DFRATAIHGDRTQSERERALAAFKNGNANLLVATAVAARGLDIPNVTH  488

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKED  646
            V+N  LP +  +YVHRIGR GRA   G+A +        +         KG Y    + +
Sbjct  489  VVNYDLPSDIDDYVHRIGRTGRAGNTGVATAFFNRGNRNIV--------KGMYELLAEAN  540

Query  647  GGCTIWYNEM  656
                 + N++
Sbjct  541  QEIPPFLNDV  550


 Score = 95.6 bits (236),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 6/112 (5%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F+   +   + + +    +  PT +Q  S+P++  G D++  A+TGSGKTG F  PV
Sbjct  159  ITEFTSPPLDALLLENIILARFTKPTPVQKYSVPIVSRGRDLMACAQTGSGKTGGFLFPV  218

Query  61   IQIVYETLKDQQEGKKGKT------TIKTGASVLNKWQMNPYDRGSAFAIGS  106
            +   ++           K+            +   +     YD    F   S
Sbjct  219  LSESFKNGPSPMPESARKSFVKKAYPTALVLAPTRELATQIYDEAKKFTYRS  270


>sp|A3LQ01|DED1_PICST ATP-dependent RNA helicase DED1 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DED1 PE=3 SV=3
Length=647

 Score = 322 bits (826),  Expect = 4e-99, Method: Composition-based stats.
 Identities = 94/355 (26%), Positives = 153/355 (43%), Gaps = 55/355 (15%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P  L++ P+REL  Q  +  K+F        ++  ++ GG     Q+  L+ G D++V T
Sbjct  252  PTILVMAPTRELVSQIYDEAKKFA---YRSWVKPAVVYGGADIGQQIRNLDKGCDLLVAT  308

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL DL+  G+++L+ +++LVLDEAD +L  G+   I  +  +      D +  Q ++ 
Sbjct  309  PGRLKDLLERGRVSLANIKYLVLDEADRMLDMGFEPQIRHIVQECD--MPDVQDRQTLMF  366

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT  + D++ L+   +    ++ +    S  + +   ++ V  +               
Sbjct  367  SATFPT-DIQMLARDFLKDYIFLSVGRVGSTSENITQKILYVEDEE--------------  411

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                                      K    +  +        IIF  TK   DNL  + 
Sbjct  412  --------------------------KKSVLLDLLSAGDAGLTIIFTETKRMADNLADFL  445

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
              QG         F    +HGDR  +ER++ L  FK G    L+ T VAARG+DI  V +
Sbjct  446  YDQG---------FPATAIHGDRSQYEREKALAAFKSGAAPILVATAVAARGLDIPNVAH  496

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
            VIN  LP +  +YVHRIGR GRA  +G+A +      + V   +     +     
Sbjct  497  VINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNKNVVKGLIDLLSEANQEV  551


 Score = 92.9 bits (229),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 6/112 (5%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F+   +   + + +    +  PT +Q  S+P++ GG D++  A+TGSGKTG F  PV
Sbjct  167  ITSFTAPPLDELLVENITMSRFTKPTPVQKYSVPIVAGGRDLMACAQTGSGKTGGFLFPV  226

Query  61   IQIVYETLKDQQEGKKGKTTIKTGAS------VLNKWQMNPYDRGSAFAIGS  106
            +   Y           G  +               +     YD    FA  S
Sbjct  227  LSESYINGPAPIAESTGAFSSHKVHPTILVMAPTRELVSQIYDEAKKFAYRS  278


>sp|Q4R6M5|DDX5_MACFA Probable ATP-dependent RNA helicase DDX5 
OS=Macaca fascicularis OX=9541 GN=DDX5 PE=2 SV=1
Length=614

 Score = 321 bits (823),  Expect = 4e-99, Method: Composition-based stats.
 Identities = 107/470 (23%), Positives = 179/470 (38%), Gaps = 72/470 (15%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
             N  +      +   +  Q       ++           +         V +++   G  
Sbjct  94   LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLD--------MVGVAQTGSGKT  145

Query  267  VKSQHSGNAQVTQTKFLP--NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
            +         +    FL   + P  L++ P+RELA+Q         +Y    +L+   I 
Sbjct  146  LSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVA---AEYCRACRLKSTCIY  202

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG     Q+  LE GV+I + TPGRL D +  GK NL +  +LVLDEAD +L  G+   I
Sbjct  203  GGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQI  262

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG-EDSVPDTVHH  443
             ++ +QI          Q ++ SAT    +V++L+E  +     +++   E S    +  
Sbjct  263  RKIVDQI------RPDRQTLMWSATWPK-EVRQLAEDFLKDYIHINIGALELSANHNILQ  315

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
            +V   +                                     +  K  K    +  I  
Sbjct  316  IVDVCH-------------------------------------DVEKDEKLIRLMEEIMS  338

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
             K ++ I+F  TK  CD L +   + G         +  + +HGD+   ER   L  FK 
Sbjct  339  EKENKTIVFVETKRRCDELTRKMRRDG---------WPAMGIHGDKSQQERGWVLNEFKH  389

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
            G    LI TDVA+RG+D+  V +VIN   P+  ++Y+HRIGR  R+ + G A +      
Sbjct  390  GKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN  449

Query  624  EKVWYHVCSSRGKGCYN-----TRLKEDGGCTIWYNEMQLLSEIEEHLNC  668
             K    + S   +          +L ED G         +  +  +  + 
Sbjct  450  IKQVSDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSA  499


 Score = 88.3 bits (217),  Expect = 9e-17, Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 41/94 (44%), Gaps = 4/94 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E      +   +   ++  PT IQA+  P+ L G D++  A+TGSGKT ++ +P 
Sbjct  93   VLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPA  152

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
            I  +      Q   ++G   I    +   +    
Sbjct  153  IVHI----NHQPFLERGDGPICLVLAPTRELAQQ  182


>sp|A5DZE6|DED1_LODEL ATP-dependent RNA helicase DED1 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DED1 PE=3 SV=1
Length=664

 Score = 323 bits (827),  Expect = 4e-99, Method: Composition-based stats.
 Identities = 94/355 (26%), Positives = 154/355 (43%), Gaps = 55/355 (15%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P  L++ P+REL  Q  +  K+F        +R  ++ GG    +Q+  L+ G D++V T
Sbjct  259  PTILVMAPTRELVSQIYDESKKFA---YRSWVRPCVVYGGADIGNQIRQLDRGCDLLVAT  315

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL DL+  G+++L+ +++LVLDEAD +L  G+   I  +  +      D +  Q ++ 
Sbjct  316  PGRLKDLLERGRVSLANIKYLVLDEADRMLDMGFEPQIRHIVQECD--MPDVQDRQTLMF  373

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT    D++ L+   +    ++ +    S  + +   V+ V  +               
Sbjct  374  SATFP-RDIQMLARDFLKDYIFLSVGRVGSTSENITQKVLYVEDEE--------------  418

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                                      K    +  +  +     I+F  TK   DNL  + 
Sbjct  419  --------------------------KKSVILDLLNANSEGLTIVFTETKRMADNLADFL  452

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
              QG         F    +HGDR  +ER++ L  FK G    L+ T VAARG+DI  V +
Sbjct  453  YDQG---------FPATAIHGDRSQYEREKALAAFKSGQAPILVATAVAARGLDIPNVSH  503

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
            VIN  LP +  +YVHRIGR GRA  +G+A +      + +   +     +     
Sbjct  504  VINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNKNIVKGMLDLLTEANQEV  558


 Score = 94.4 bits (233),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 56/148 (38%), Gaps = 17/148 (11%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F+   +   + + ++   +  PT +Q  S+P++  G D++  A+TGSGKTG F  PV
Sbjct  174  INSFTAPPLDELLVENIKLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPV  233

Query  61   IQIVYETLKDQQEGKKGK------TTIKTGASVLNKWQMNPYDRGSAFAIGS--------  106
            +   Y           G              +   +     YD    FA  S        
Sbjct  234  LSESYMNGPAPIPESTGAFSSHKVYPTILVMAPTRELVSQIYDESKKFAYRSWVRPCVVY  293

Query  107  DGLCCQSREVKEWHGC---RATKGLMKG  131
             G    ++  +   GC    AT G +K 
Sbjct  294  GGADIGNQIRQLDRGCDLLVATPGRLKD  321


>sp|Q5A9Z6|FAL1_CANAL ATP-dependent RNA helicase FAL1 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=FAL1 
PE=3 SV=1
Length=399

 Score = 314 bits (805),  Expect = 4e-99, Method: Composition-based stats.
 Identities = 114/445 (26%), Positives = 178/445 (40%), Gaps = 73/445 (16%)

Query  211  DLGLAF--EIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYI  266
            D  L F  +    +K    F +  LK   LK  + +G E          + +    D   
Sbjct  9    DNELEFSHKSTKGIKVHRTFESMNLKPDLLKGIYAYGFETPSAIQSRAIMQIISGRDTIA  68

Query  267  VKSQHSGNA------QVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRE  320
                 +G         +          +ALI+ P+RELA Q  N +K    Y++   +  
Sbjct  69   QAQSGTGKTATFSIGMLEVIDTKSKECQALILSPTRELAIQIQNVVKHLGDYMN---IHT  125

Query  321  LLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGY  380
               IGG    + +  L+ G  IV GTPGR+ D++    L    ++ L+LDEAD L ++G+
Sbjct  126  HACIGGKNVGEDVKKLQQGQQIVSGTPGRVIDVIKRRNLQTRNIKVLILDEADELFTKGF  185

Query  381  SDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDT  440
             + I  ++  +P              SATL   +V +++ K    P  + +K ++     
Sbjct  186  KEQIYEIYKHLPPSVQVVVV------SATLP-REVLEMTSKFTTDPVKILVKRDEISLSG  238

Query  441  VHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRA  500
            +    V    +                                         K +     
Sbjct  239  IKQYYVQCERED---------------------------------------WKFDTLCDL  259

Query  501  IKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLER  560
                 + QA+IFC TK+  + L     +Q          F+ V +HGD K  ER   +  
Sbjct  260  YDNLTITQAVIFCNTKLKVNWLADQMKKQ---------NFTVVAMHGDMKQDERDSIMND  310

Query  561  FKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            F++G+ R LI TDV ARGID+  V  VIN  LP +K+NY+HRIGR GR  R G AI+L+ 
Sbjct  311  FRRGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGTAINLIT  370

Query  621  TEKEKVWYHVCSSRGKGCYNTRLKE  645
             +                Y+T++KE
Sbjct  371  KDDVVTLKEFEK-----YYSTKIKE  390


 Score = 98.3 bits (243),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 21/102 (21%), Positives = 44/102 (43%), Gaps = 9/102 (9%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F  M + P++ + +    +  P+ IQ+ +I  I+ G D +  A++G+GKT  FSI ++
Sbjct  26   RTFESMNLKPDLLKGIYAYGFETPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGML  85

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
            +++    K+ Q             S   +  +   +      
Sbjct  86   EVIDTKSKECQ---------ALILSPTRELAIQIQNVVKHLG  118


>sp|P0A4D8|CSHA_STRR6 DEAD-box ATP-dependent RNA helicase CshA 
OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) OX=171101 
GN=cshA PE=3 SV=1
Length=524

 Score = 318 bits (816),  Expect = 4e-99, Method: Composition-based stats.
 Identities = 112/480 (23%), Positives = 205/480 (43%), Gaps = 74/480 (15%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
              +L L+ ++   ++      A  ++   +               G   + +A  G   K
Sbjct  3    FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALE----------GKDVIGQAQTG-TGK  51

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
            +   G   + + +      +AL++ P+RELA Q+   + +F +   +  ++   + GG +
Sbjct  52   TAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR---SKGVKVRSVYGGSS  108

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
               Q+  L++G  IVVGTPGRL DL+    L L  +  L+LDEAD +L+ G+ + I  + 
Sbjct  109  IEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAII  168

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
            +++P      +  Q ++ SAT+    +K++  + M  P  V +  ++   + V    + V
Sbjct  169  SRVP------ENRQTLLFSATMPDA-IKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRV  221

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
              +                                         K +   R +   + + 
Sbjct  222  KEQE----------------------------------------KFDTMTRLMDVAQPEL  241

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
            AI+F RTK   D L +    +G         F    +HGD   ++R + L  FK G++  
Sbjct  242  AIVFGRTKRRVDELTRGLKIRG---------FRAEGIHGDLDQNKRLRVLRDFKNGNLDV  292

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE---K  625
            L+ TDVAARG+DI GV +V N  +P + ++YVHRIGR GRA + G +I+ VA  +    +
Sbjct  293  LVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQ  352

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE-IEEHLNCTISQVEPDIKVPVDEF  684
            +  ++   R KG     ++E           ++  +  +E +     +   D +    EF
Sbjct  353  IIENLTKKRMKGLKPASVEESFQSKKQVALKKIERDFADETIRANFEKFGKDARKLAAEF  412


 Score = 95.6 bits (236),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 23/102 (23%), Positives = 46/102 (45%), Gaps = 9/102 (9%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+E+ +  ++   +E+  ++  + IQ ++IPL L G DV+  A+TG+GKT AF +P ++ 
Sbjct  3    FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEK  62

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG  105
            +       Q             +   +  +   +    F   
Sbjct  63   IRTEEATIQ---------ALVIAPTRELAVQSQEELFRFGRS  95


>sp|P0A4D7|CSHA_STRPN DEAD-box ATP-dependent RNA helicase CshA 
OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 
/ TIGR4) OX=170187 GN=cshA PE=3 SV=1
Length=524

 Score = 318 bits (816),  Expect = 4e-99, Method: Composition-based stats.
 Identities = 112/480 (23%), Positives = 205/480 (43%), Gaps = 74/480 (15%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
              +L L+ ++   ++      A  ++   +               G   + +A  G   K
Sbjct  3    FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALE----------GKDVIGQAQTG-TGK  51

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
            +   G   + + +      +AL++ P+RELA Q+   + +F +   +  ++   + GG +
Sbjct  52   TAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR---SKGVKVRSVYGGSS  108

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
               Q+  L++G  IVVGTPGRL DL+    L L  +  L+LDEAD +L+ G+ + I  + 
Sbjct  109  IEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAII  168

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
            +++P      +  Q ++ SAT+    +K++  + M  P  V +  ++   + V    + V
Sbjct  169  SRVP------ENRQTLLFSATMPDA-IKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRV  221

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
              +                                         K +   R +   + + 
Sbjct  222  KEQE----------------------------------------KFDTMTRLMDVAQPEL  241

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
            AI+F RTK   D L +    +G         F    +HGD   ++R + L  FK G++  
Sbjct  242  AIVFGRTKRRVDELTRGLKIRG---------FRAEGIHGDLDQNKRLRVLRDFKNGNLDV  292

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE---K  625
            L+ TDVAARG+DI GV +V N  +P + ++YVHRIGR GRA + G +I+ VA  +    +
Sbjct  293  LVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQ  352

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE-IEEHLNCTISQVEPDIKVPVDEF  684
            +  ++   R KG     ++E           ++  +  +E +     +   D +    EF
Sbjct  353  IIENLTKKRMKGLKPASVEESFQSKKQVALKKIERDFADETIRANFEKFGKDARKLAAEF  412


 Score = 95.6 bits (236),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 23/102 (23%), Positives = 46/102 (45%), Gaps = 9/102 (9%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+E+ +  ++   +E+  ++  + IQ ++IPL L G DV+  A+TG+GKT AF +P ++ 
Sbjct  3    FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEK  62

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG  105
            +       Q             +   +  +   +    F   
Sbjct  63   IRTEEATIQ---------ALVIAPTRELAVQSQEELFRFGRS  95


>sp|A1CR32|RRP3_ASPCL ATP-dependent rRNA helicase rrp3 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / 
NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=rrp3 PE=3 SV=1
Length=473

 Score = 317 bits (811),  Expect = 4e-99, Method: Composition-based stats.
 Identities = 111/503 (22%), Positives = 184/503 (37%), Gaps = 87/503 (17%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K+ KDLG+  ++              ++   +                 + L++   G  
Sbjct  53   KSFKDLGIIDQLCEACATMGYKAPTPIQAESIPLAL--------QDRDLIGLAETGSGKT  104

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
                      +      P +   L++ P+RELA Q   + +     I+   +R  +I+GG
Sbjct  105  AAFALPI---LQALMDKPQSFFGLVLAPTRELAFQISQSFEALGSTIN---VRCAVIVGG  158

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            +    Q   L     I+V TPGRL D + +T   +L  +++LV+DEAD LL   +   ++
Sbjct  159  MDMVSQSIALGKKPHIIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLD  218

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED-SVPDTVHHV  444
            ++   +P      +  +  + SAT+ S  V+ L    +  P  V +         T+   
Sbjct  219  KILKILP------RERRTFLFSATM-SSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQS  271

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
               +  K                                         K  Y V  + E 
Sbjct  272  YRFIPHKH----------------------------------------KDIYLVYLLNEF  291

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
                AIIF RT  +   +       G         F  + LHG      R   L +F+  
Sbjct  292  VGQSAIIFTRTVHETQRISFLLRALG---------FGAIPLHGQLSQSSRLGALGKFRSR  342

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
                L+ TDVAARG+DI  V  V+N  LP + + YVHR+GR  RA + G+AIS V     
Sbjct  343  SRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDV  402

Query  625  KVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEF  684
            ++W  +  + GK      L++D            +  + E +     Q   ++K     F
Sbjct  403  EIWLRIEGALGKKLDEYDLEKD-----------EVMVLAERVGEAQRQAIMEMKN----F  447

Query  685  DGKVTYGQKRAAGGGSYKGHVDI  707
            D K     K+   G   +  +D 
Sbjct  448  DEKKGTRAKKFGKGKRSRDEMDQ  470


 Score = 102 bits (255),  Expect = 8e-22, Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 9/110 (8%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +F ++G++ ++ +A   M +  PT IQAESIPL L   D++  AETGSGKT AF++P++
Sbjct  53   KSFKDLGIIDQLCEACATMGYKAPTPIQAESIPLALQDRDLIGLAETGSGKTAAFALPIL  112

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
            Q + +         K ++      +   +          A     +  C 
Sbjct  113  QALMD---------KPQSFFGLVLAPTRELAFQISQSFEALGSTINVRCA  153


>sp|Q0UAT0|FAL1_PHANO ATP-dependent RNA helicase FAL1 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=FAL1 PE=3 SV=3
Length=374

 Score = 313 bits (802),  Expect = 5e-99, Method: Composition-based stats.
 Identities = 108/437 (25%), Positives = 173/437 (40%), Gaps = 84/437 (19%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
            D  + F     +     F A  LK   L+  + +G E          V + K  D     
Sbjct  10   DEKMEFSTSKEVTVAPTFEAMHLKENLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQA  69

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
               +G         L                    + I     Y++   ++    IGG  
Sbjct  70   QSGTGKTATFSISIL-------------------QSVIMGLGDYMN---VQCHACIGGTN  107

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
              + +  L+ G  +V GTPGR+ D++    L    ++ LVLDEAD LL++G+ + I  ++
Sbjct  108  VGEDIRKLDYGQHVVSGTPGRVADMIRRRNLRTRNIKMLVLDEADELLNRGFREQIYDVY  167

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
              +P  T      QV+V SATL  +DV +++ K M  P  + +K ++   + +    + +
Sbjct  168  RYLPPAT------QVVVVSATLP-YDVLEMTTKFMTDPVRILVKRDELTLEGLKQYFIAI  220

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
              +  +                                     L   Y    I      Q
Sbjct  221  EKEEWKF----------------------------------DTLCDLYDTLTIT-----Q  241

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
            A+IFC T+   D L     +           F+   +HGD    ER   ++ F++ + R 
Sbjct  242  AVIFCNTRRKVDWLTDKMREA---------NFTVSSMHGDMPQRERDSIMQDFRQANSRV  292

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            LI TDV ARGID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V  E  ++  
Sbjct  293  LISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTQEDVRILR  352

Query  629  HVCSSRGKGCYNTRLKE  645
             +        Y+T++ E
Sbjct  353  DIEL-----YYSTQIDE  364


 Score = 82.5 bits (202),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 0/62 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F  M +   + + +    +  P+ +Q+ +I  +  G D +  A++G+GKT  FSI ++Q
Sbjct  26  TFEAMHLKENLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISILQ  85

Query  63  IV  64
            V
Sbjct  86  SV  87


>sp|Q1E1N5|RRP3_COCIM ATP-dependent rRNA helicase RRP3 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=RRP3 PE=3 SV=1
Length=474

 Score = 316 bits (810),  Expect = 6e-99, Method: Composition-based stats.
 Identities = 105/504 (21%), Positives = 184/504 (37%), Gaps = 83/504 (16%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
            +K+ KDLG+   +     +        ++   +                 + L++   G 
Sbjct  47   TKSFKDLGIIDSLCEACDSLGYKAPTQIQAESIPLAL--------QGRDLIGLAETGSGK  98

Query  266  IVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
                       +      P +   L++ P+RELA Q     +     I    +R  +I+G
Sbjct  99   TAAFALPI---LQALMDKPQSMFGLVLAPTRELAYQISQQFEALGSLIS---VRCAVIVG  152

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            G+    Q   L     I+V TPGRL D + +T   +L  +++LV+DEAD LL   +   +
Sbjct  153  GMDMVSQAIALGKKPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPIL  212

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED-SVPDTVHH  443
            +++   +P      K  +  + SAT+ S  V+ L    +  P  V +         T+  
Sbjct  213  DKILKVLP------KERRTYLFSATM-SSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQ  265

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
              + +  K                                         K  Y +  + E
Sbjct  266  NCLIIPHKH----------------------------------------KDIYLIYLLNE  285

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
                  IIF RT  +   L       G         F  + LHG      R   L +F+ 
Sbjct  286  FPGQSVIIFTRTVNETQRLAILLRALG---------FGAIPLHGQLSQSARLGALGKFRS  336

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
                 L+ TDVAARG+DI  V  V+N  LP + + Y+HR+GR  RA + G A SLV    
Sbjct  337  RSRNILVATDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLVTQYD  396

Query  624  EKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDE  683
             ++W  + ++ GK     +++++    +       + E + H    + ++          
Sbjct  397  VEIWQRIEAALGKELDEYKVEKEEVMVL----SDRVGEAQRHAITEMKELH-----ENRG  447

Query  684  FDGKVTYGQKRAAGGGSYKGHVDI  707
              G     + R  G G+ +   ++
Sbjct  448  KKGATL--RNRRIGKGAKRSRDEM  469


 Score = 104 bits (260),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 9/103 (9%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +F ++G++  + +A + + +  PT IQAESIPL L G D++  AETGSGKT AF++P++
Sbjct  48   KSFKDLGIIDSLCEACDSLGYKAPTQIQAESIPLALQGRDLIGLAETGSGKTAAFALPIL  107

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            Q + +         K ++      +   +       +  A   
Sbjct  108  QALMD---------KPQSMFGLVLAPTRELAYQISQQFEALGS  141


>sp|Q5JKF2|RH40_ORYSJ DEAD-box ATP-dependent RNA helicase 40 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os01g0549400 PE=2 
SV=2
Length=792

 Score = 326 bits (835),  Expect = 7e-99, Method: Composition-based stats.
 Identities = 109/423 (26%), Positives = 179/423 (42%), Gaps = 70/423 (17%)

Query  213  GLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHS  272
            G   EI   ++         ++          ++         VA++K   G  +     
Sbjct  156  GFPPEILKEIQRAGFSSPTPIQAQSWPIALQCQD--------VVAIAKTGSGKTLGYLLP  207

Query  273  GNAQVTQTKFLPN-APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARD  331
            G   + + +  P   P  L++ P+RELA Q L    +F +   + ++    + GG     
Sbjct  208  GFMHIKRLQNNPRSGPTVLVLAPTRELATQILEEAVKFGR---SSRISSTCLYGGAPKGP  264

Query  332  QLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQI  391
            QL  L+ GVD+VV TPGRL+D++   +++L QV +LVLDEAD +L  G+   I ++  +I
Sbjct  265  QLRDLDRGVDVVVATPGRLNDILEMRRISLKQVSYLVLDEADRMLDMGFEPQIRKIVKEI  324

Query  392  PQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVP--DTVHHVVVPVN  449
            P       R Q ++ +AT    +V++++E ++  P  V +   D +     +   V  + 
Sbjct  325  P------PRRQTLMYTATWPK-EVRRIAEDLLVHPVQVTIGSVDELVANSAITQNVELIT  377

Query  450  PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA  509
            P                                E      +IL+         +    + 
Sbjct  378  P-------------------------------SEKLRRLEQILRS--------QDSGSKV  398

Query  510  IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL  569
            +IFC TK  CD L +   +Q          F    +HGD+   ER++ L  F+ G    L
Sbjct  399  LIFCTTKRMCDQLARTLTRQ----------FGASAIHGDKSQSEREKVLSHFRSGRSPIL  448

Query  570  ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            + TDVAARG+DI  +  VIN   P   ++YVHRIGR GRA   G+A +    +  K    
Sbjct  449  VATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTFFCDQDSKYAAD  508

Query  630  VCS  632
            +  
Sbjct  509  LIK  511


 Score = 98.7 bits (244),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 26/106 (25%), Positives = 44/106 (42%), Gaps = 5/106 (5%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F   G  PEI + ++   +  PT IQA+S P+ L   DV+  A+TGSGKT  + +P 
Sbjct  149  ITSFETGGFPPEILKEIQRAGFSSPTPIQAQSWPIALQCQDVVAIAKTGSGKTLGYLLPG  208

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
               +     + + G           +   +      +    F   S
Sbjct  209  FMHIKRLQNNPRSG-----PTVLVLAPTRELATQILEEAVKFGRSS  249


>sp|A7TEF4|FAL1_VANPO ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=FAL1 PE=3 SV=1
Length=399

 Score = 313 bits (803),  Expect = 7e-99, Method: Composition-based stats.
 Identities = 116/442 (26%), Positives = 189/442 (43%), Gaps = 72/442 (16%)

Query  203  VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAP  262
            + FS+  +D  L F+    +K    F +  LK+  L+  +G   F+ P      A+++  
Sbjct  1    MSFSRE-EDKKLKFKTSKKLKISPTFESMNLKDDLLRGIYGY-GFEAPSAIQSRAITQII  58

Query  263  DG-YIVKSQHSGNAQ--------VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI  313
             G  ++    SG  +        +          +AL++ P+RELA Q    +     Y+
Sbjct  59   SGTDVIAQAQSGTGKTATFTIGMLQAIDLKRKDLQALVLSPTRELASQINQVVSNLGDYM  118

Query  314  DNPKLRELLIIGGVAARDQLSVL-ENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
            +   ++   + GG   +D L+ + +NG  +V GTPGR+ D+     LN   V+ L+LDEA
Sbjct  119  N---VQSYAMTGGKTMKDDLNRMQKNGCQVVSGTPGRVLDMFKRHLLNTRNVQMLILDEA  175

Query  373  DGLL--SQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVD  430
            D LL  S G+   I  +  ++P         QV+V SAT+ S D+ ++++K M  P  + 
Sbjct  176  DELLGESLGFKQQIYDIFTKLPAA------CQVVVVSATM-SKDILEVTKKFMSDPVKIL  228

Query  431  LKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIK  490
            +K ++   + +    V V  +                                       
Sbjct  229  VKRDEISLEGIKQYYVNVEKED--------------------------------------  250

Query  491  ILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRK  550
              K +          + Q +IFC TK   D L     Q           F+ V +HGD K
Sbjct  251  -WKFDTLCDLYDSLTITQCVIFCNTKKKVDWLSAKLTQ---------SNFAVVSMHGDMK  300

Query  551  PHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAE  610
              +R + +  F+ G  R LI TDV ARGID+  V  VIN  +P+  +NY+HRIGR GR  
Sbjct  301  QEDRNKVMSDFRSGHSRVLISTDVWARGIDVQQVSLVINYDIPEIMENYIHRIGRSGRFG  360

Query  611  RMGLAISLVATEKEKVWYHVCS  632
            R G+AI+ + +        +  
Sbjct  361  RKGVAINFITSSDLSKMKEIEK  382


 Score = 102 bits (255),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 55/138 (40%), Gaps = 1/138 (1%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F  M +  ++ + +    +  P+ IQ+ +I  I+ G DV+  A++G+GKT  F+I ++Q
Sbjct  24   TFESMNLKDDLLRGIYGYGFEAPSAIQSRAITQIISGTDVIAQAQSGTGKTATFTIGMLQ  83

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGC  122
             +    KD Q      T             +  Y    ++A+             + +GC
Sbjct  84   AIDLKRKDLQALVLSPTRELASQINQVVSNLGDYMNVQSYAMTGGKTMKDDLNRMQKNGC  143

Query  123  RATKGLMKGKHYYEVSCH  140
            +   G   G+       H
Sbjct  144  QVVSG-TPGRVLDMFKRH  160


>sp|Q6FJG1|FAL1_CANGA ATP-dependent RNA helicase FAL1 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=FAL1 PE=3 SV=1
Length=399

 Score = 313 bits (803),  Expect = 7e-99, Method: Composition-based stats.
 Identities = 107/419 (26%), Positives = 178/419 (42%), Gaps = 71/419 (17%)

Query  226  ALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY-IVKSQHSGNAQ--------  276
            A F +  LK   L+  +    F+ P      A+++   G  ++    SG  +        
Sbjct  23   ATFESMDLKEGLLRGIYSY-GFEAPSAIQSRAITQIISGKDVIAQAQSGTGKTATFTIGM  81

Query  277  VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL  336
            +       +  +AL++ P+RELA Q    +     Y++   ++   + GG   +D L  +
Sbjct  82   LQAIDLKKHDLQALVLSPTRELAAQIGKVVTNLGDYMN---VKAYAMTGGKTMKDDLKKI  138

Query  337  EN-GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQ--GYSDFINRMHNQIPQ  393
            +  G  ++ GTPGR+ D++    +    V+ LVLDEAD LLS   G+   I  +  ++P+
Sbjct  139  QKHGCQVISGTPGRVLDMIKRRLIETRHVQILVLDEADELLSDTLGFKHQIYDIFTKLPR  198

Query  394  VTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTD  453
             +      QV+V SAT+ S ++ ++++K M+ P  + +K ++   + +    V V  +  
Sbjct  199  TS------QVVVVSATM-SPEILEITKKFMNDPVKILVKRDEITLEGIKQYYVNVEKEE-  250

Query  454  RLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFC  513
                                                   K +          + Q +IFC
Sbjct  251  --------------------------------------WKFDTLCDIYDSLTITQCVIFC  272

Query  514  RTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTD  573
             +K   D L             K   F+ + +HGD K  ER + +  F+ G  R LI TD
Sbjct  273  NSKKKVDWLAHKL---------KQSNFAVISMHGDMKQDERDRVMNEFRTGQSRVLISTD  323

Query  574  VAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
            V ARGID+  V  VIN  LP+  +NYVHRIGR GR  R G+AI+ +          +  
Sbjct  324  VWARGIDVQQVSLVINYDLPEITENYVHRIGRSGRFGRKGVAINFLTKIDASRMKEIEK  382


 Score = 102 bits (255),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 0/126 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            A F  M +   + + +    +  P+ IQ+ +I  I+ G DV+  A++G+GKT  F+I ++
Sbjct  23   ATFESMDLKEGLLRGIYSYGFEAPSAIQSRAITQIISGKDVIAQAQSGTGKTATFTIGML  82

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHG  121
            Q +     D Q      T             +  Y    A+A+          +  + HG
Sbjct  83   QAIDLKKHDLQALVLSPTRELAAQIGKVVTNLGDYMNVKAYAMTGGKTMKDDLKKIQKHG  142

Query  122  CRATKG  127
            C+   G
Sbjct  143  CQVISG  148


>sp|Q2R1M8|RH52C_ORYSJ DEAD-box ATP-dependent RNA helicase 52C 
OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0599500 PE=3 
SV=1
Length=623

 Score = 321 bits (822),  Expect = 8e-99, Method: Composition-based stats.
 Identities = 104/399 (26%), Positives = 164/399 (41%), Gaps = 57/399 (14%)

Query  252  KDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN---------APKALIVEPSRELAEQT  302
                +A ++   G          + + +                P ALI+ P+REL+ Q 
Sbjct  192  GRDLMACAQTGSGKTAAFCFPIISGIMRGPPAQRPQRGGMRTACPLALILSPTRELSMQI  251

Query  303  LNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLS  362
                ++F        +R ++  GG     QL  LE GVDI+V TPGRL DL+   +++L 
Sbjct  252  HEEARKFS---YQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQ  308

Query  363  QVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKI  422
             +R+L LDEAD +L  G+   + R+  Q+          Q ++ SAT    ++++++   
Sbjct  309  SIRYLALDEADRMLDMGFEPQVRRIVEQMDMPPPGA--RQTMLFSATFPK-EIQRMASDF  365

Query  423  MHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSP  482
            +    ++ +    S  D +   V  V     R       SH+       +D+  PG    
Sbjct  366  LENYIFLAVGRVGSSTDLIVQRVEFVQEADKR-------SHLMDLLHAQRDSATPG----  414

Query  483  EMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSC  542
                                  K    ++F  TK   D+LE +    G         F  
Sbjct  415  ----------------------KPTLTLVFVETKRGADSLEHWLCMNG---------FPA  443

Query  543  VCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHR  602
              +HGDR   ER+  L  FK G    L+ TDVAARG+DI  V +V+N  LP++  +YVHR
Sbjct  444  TSIHGDRNQQEREYALRSFKSGHTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHR  503

Query  603  IGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
            IGR GRA + GLA +        +   +     +     
Sbjct  504  IGRTGRAGKSGLATAFFNENNSSMARSLAELMQESNQEV  542


 Score = 111 bits (278),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 3/106 (3%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F+E+ +   +   +    ++ PT +Q  +IP+ L G D++  A+TGSGKT AF  P+
Sbjct  154  VGTFAEIDLGQALNDNIRRCKYVRPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPI  213

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLN---KWQMNPYDRGSAFA  103
            I  +      Q+  + G  T    A +L+   +  M  ++    F+
Sbjct  214  ISGIMRGPPAQRPQRGGMRTACPLALILSPTRELSMQIHEEARKFS  259


>sp|P0CR00|RRP3_CRYNJ ATP-dependent rRNA helicase RRP3 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=RRP3 PE=3 SV=1
Length=484

 Score = 316 bits (810),  Expect = 8e-99, Method: Composition-based stats.
 Identities = 103/447 (23%), Positives = 169/447 (38%), Gaps = 71/447 (16%)

Query  202  HVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKA  261
                +K   DLG++ E+     +        ++   +                 + L++ 
Sbjct  33   EASHNKTFADLGISPELCRACASMGFKKPSDIQAEAIPHAL--------EGKDIIGLAQT  84

Query  262  PDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLREL  321
              G            +      P    AL++ P+RELA Q    +           +R  
Sbjct  85   GSGKTAAFSLPI---LQTLWENPQPFFALVLAPTRELAYQISQQVTSLG---SGIGVRTA  138

Query  322  LIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGY  380
            +++GG+    Q   L     I+V TPGRL D + +T   +L  +++LV+DEAD LL   +
Sbjct  139  VLVGGMDMMSQSIALSKRPHIIVATPGRLMDHLENTKGFSLKSLKYLVMDEADRLLDLDF  198

Query  381  SDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDT  440
               I+++   IP      K     + SAT+ +  V KL    ++ P  V++  + S   T
Sbjct  199  GPIIDKILKVIP------KERNTYLFSATMTT-KVAKLQRASLNKPVRVEVSSKYSTVST  251

Query  441  VHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRA  500
            +    + +  K                                         K  Y +  
Sbjct  252  LLQHYLLLPLKN----------------------------------------KDAYLLYL  271

Query  501  IKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLER  560
              E      +IF RT  D   L     + G         F  + LHG      R  +L +
Sbjct  272  ANELSSSSMMIFTRTVADSQRLSIILRRLG---------FPAIPLHGQMTQSLRLASLNK  322

Query  561  FKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            FK G    L+ TDVA+RG+DI  V  VIN  +P   ++YVHR+GR  RA R G +I+LV 
Sbjct  323  FKSGGRSILVATDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVT  382

Query  621  TEKEKVWYHVCSSRGKGCYNTRLKEDG  647
                ++   + S  GK   +  + ++ 
Sbjct  383  QYDVEILQRIESHIGKKMTSFDVDKEA  409


 Score = 111 bits (277),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 54/106 (51%), Gaps = 9/106 (8%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F+++G+ PE+ +A   M +  P+DIQAE+IP  L G D++  A+TGSGKT AFS+P++
Sbjct  38   KTFADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPIL  97

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            Q ++E           +       +   +       + ++   G  
Sbjct  98   QTLWEN---------PQPFFALVLAPTRELAYQISQQVTSLGSGIG  134


>sp|P0CR01|RRP3_CRYNB ATP-dependent rRNA helicase RRP3 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=RRP3 PE=3 SV=1
Length=484

 Score = 316 bits (810),  Expect = 8e-99, Method: Composition-based stats.
 Identities = 103/447 (23%), Positives = 169/447 (38%), Gaps = 71/447 (16%)

Query  202  HVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKA  261
                +K   DLG++ E+     +        ++   +                 + L++ 
Sbjct  33   EASHNKTFADLGISPELCRACASMGFKKPSDIQAEAIPHAL--------EGKDIIGLAQT  84

Query  262  PDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLREL  321
              G            +      P    AL++ P+RELA Q    +           +R  
Sbjct  85   GSGKTAAFSLPI---LQTLWENPQPFFALVLAPTRELAYQISQQVTSLG---SGIGVRTA  138

Query  322  LIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGY  380
            +++GG+    Q   L     I+V TPGRL D + +T   +L  +++LV+DEAD LL   +
Sbjct  139  VLVGGMDMMSQSIALSKRPHIIVATPGRLMDHLENTKGFSLKSLKYLVMDEADRLLDLDF  198

Query  381  SDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDT  440
               I+++   IP      K     + SAT+ +  V KL    ++ P  V++  + S   T
Sbjct  199  GPIIDKILKVIP------KERNTYLFSATMTT-KVAKLQRASLNKPVRVEVSSKYSTVST  251

Query  441  VHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRA  500
            +    + +  K                                         K  Y +  
Sbjct  252  LLQHYLLLPLKN----------------------------------------KDAYLLYL  271

Query  501  IKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLER  560
              E      +IF RT  D   L     + G         F  + LHG      R  +L +
Sbjct  272  ANELSSSSMMIFTRTVADSQRLSIILRRLG---------FPAIPLHGQMTQSLRLASLNK  322

Query  561  FKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            FK G    L+ TDVA+RG+DI  V  VIN  +P   ++YVHR+GR  RA R G +I+LV 
Sbjct  323  FKSGGRSILVATDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVT  382

Query  621  TEKEKVWYHVCSSRGKGCYNTRLKEDG  647
                ++   + S  GK   +  + ++ 
Sbjct  383  QYDVEILQRIESHIGKKMTSFDVDKEA  409


 Score = 111 bits (277),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 54/106 (51%), Gaps = 9/106 (8%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F+++G+ PE+ +A   M +  P+DIQAE+IP  L G D++  A+TGSGKT AFS+P++
Sbjct  38   KTFADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPIL  97

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            Q ++E           +       +   +       + ++   G  
Sbjct  98   QTLWEN---------PQPFFALVLAPTRELAYQISQQVTSLGSGIG  134


>sp|C8V8H4|DED1_EMENI ATP-dependent RNA helicase ded1 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=ded1 PE=3 SV=1
Length=668

 Score = 322 bits (825),  Expect = 9e-99, Method: Composition-based stats.
 Identities = 97/355 (27%), Positives = 152/355 (43%), Gaps = 54/355 (15%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P +LI+ P+REL  Q  +  ++F        +R  ++ GG     QL  +E G D++V T
Sbjct  272  PTSLILAPTRELVSQIFDEARKFA---YRSWVRPCVVYGGADIGSQLRQIERGCDLLVAT  328

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL DL+  G+++L  +++L+LDEAD +L  G+   I R+     +   +    Q ++ 
Sbjct  329  PGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIRRIVEG--EDMPNVNDRQTLMF  386

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT    D++ L+   +    ++ +    S  + +   V  V     R         +  
Sbjct  387  SATFP-RDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKR--------SVLL  437

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
            D +H    T                                  +IF  TK   D L ++ 
Sbjct  438  DILHTHGTTGL-------------------------------TLIFVETKRMADALSEFL  466

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
            I Q         +F    +HGDR   ER++ LE F+ G    L+ T VAARG+DI  V +
Sbjct  467  INQ---------RFPATAIHGDRTQRERERALEMFRSGRYPILVATAVAARGLDIPNVTH  517

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
            VIN  LP +  +YVHRIGR GRA   G+A +        V   +     +     
Sbjct  518  VINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDLIDLLKEAHQEV  572


 Score = 95.6 bits (236),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 27/114 (24%), Positives = 48/114 (42%), Gaps = 8/114 (7%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F+   +   +   +    +  PT +Q  SIP+++ G D++  A+TGSGKTG F  P+
Sbjct  185  VNTFTNPPLDDHLISNIALARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPI  244

Query  61   IQIVYETLKDQ-------QEGKKGKT-TIKTGASVLNKWQMNPYDRGSAFAIGS  106
            +   Y+            Q G++ K        +   +     +D    FA  S
Sbjct  245  LSQAYQNGPAAPPPSAAGQFGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRS  298


>sp|Q2H1Q8|RRP3_CHAGB ATP-dependent rRNA helicase RRP3 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / 
NBRC 6347 / NRRL 1970) OX=306901 GN=RRP3 PE=3 SV=1
Length=493

 Score = 317 bits (811),  Expect = 9e-99, Method: Composition-based stats.
 Identities = 117/503 (23%), Positives = 182/503 (36%), Gaps = 79/503 (16%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K  +DLG+   +    K         ++   +                 + L++   G  
Sbjct  65   KTFQDLGIVDSLCDACKELGWKKPTPIQQESIPLAL--------QDRDIIGLAETGSGKT  116

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
                      +      P    AL++ P+RELA Q   + +     I    LR  LI+GG
Sbjct  117  GAFALPI---LQALLDKPQPLFALVLAPTRELAAQIAQSFEALGSLIS---LRCALILGG  170

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVS-TGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            +    Q   L     +VV TPGRL D +  T   +L  +R+LV+DEAD LL   +   ++
Sbjct  171  LDMVQQAIALGKKPHVVVATPGRLLDHLEKTKGFSLRNLRYLVMDEADRLLDMDFGPILD  230

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG-EDSVPDTVHHV  444
            ++   +P      +  +  + SAT+ S  V+ L    +  P  V +   +     T+   
Sbjct  231  KILKFLP------RERRTFLFSATM-SSKVESLQRACLRDPLKVSISSSKYQTVSTLVQN  283

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
             V +                                            K  Y +    E 
Sbjct  284  YVFIPHTH----------------------------------------KDTYLIYLCNEF  303

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
                 IIF RT I+   +       G G          + LHG      R   L +F+ G
Sbjct  304  AGQTIIIFTRTVIETQRIAILLRTLGMG---------AIPLHGGLSQSARLGALNKFRAG  354

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
                L+ TDVAARG+DI  V  V+N+ LP + + YVHR+GR  RA R G AIS V     
Sbjct  355  SRDILVATDVAARGLDIPNVDCVLNLDLPGDSKTYVHRVGRTARAGRSGHAISFVTQYDL  414

Query  625  KVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEF  684
            ++W  + ++ G       L++D            + E +      I  +  D        
Sbjct  415  ELWLRIEAALGTKLTEYSLEKDDVMVFRP----RVEEAQRIAKTEIKALMDDRGKKGSVL  470

Query  685  DGKVTYGQKRAAGGGSYKGHVDI  707
             G    G+KR   G S + H+D 
Sbjct  471  KGG--KGRKRGPPGSS-RDHMDA  490


 Score = 101 bits (251),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 44/67 (66%), Gaps = 0/67 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F ++G++  +  A +E+ W  PT IQ ESIPL L   D++  AETGSGKTGAF++P++
Sbjct  65   KTFQDLGIVDSLCDACKELGWKKPTPIQQESIPLALQDRDIIGLAETGSGKTGAFALPIL  124

Query  62   QIVYETL  68
            Q + +  
Sbjct  125  QALLDKP  131


>sp|Q814I2|DBPA_BACCR ATP-dependent RNA helicase DbpA OS=Bacillus 
cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 
/ NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) OX=226900 
GN=dbpA PE=2 SV=1
Length=481

 Score = 316 bits (809),  Expect = 1e-98, Method: Composition-based stats.
 Identities = 114/470 (24%), Positives = 195/470 (41%), Gaps = 74/470 (16%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K+  D  L+ EI   +          ++   +             K   V  S+   G  
Sbjct  4    KSFSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVAL--------QKKDLVVKSQTGSGKT  55

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
                  G       ++  N P+AL++ P+RELA Q   +I    ++    +++   + G 
Sbjct  56   ASF---GIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRF---KRIKAAAVYGK  109

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 Q   L+    IVVGTPGR+ D +  G L+L  +++LV+DEAD +L+ G+ D +  
Sbjct  110  SPFARQKLELKQKTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEA  169

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVV  446
            + +++P       +   ++ SATL   DV+KLS   M+ PT +++K      D + H   
Sbjct  170  IIDELPT------KRMTMLFSATLP-EDVEKLSRTYMNSPTHIEIKAAGITTDKIEHT--  220

Query  447  PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM  506
                                                    E I+  K             
Sbjct  221  --------------------------------------LFEVIEDEKLSLLKDVTTIENP  242

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
            D  IIFCRT+ + D++ +   +           + C  +HG     +R + ++ F+KG  
Sbjct  243  DSCIIFCRTQENVDHVYRQLKRA---------NYPCDKIHGGMVQEDRFEVMDDFRKGKF  293

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
            R+L+ TDVAARGIDI  + +VIN  +P EK++YVHR GR GRA   G AI+ +   + + 
Sbjct  294  RYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRF  353

Query  627  WYHVCSSRG----KGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQ  672
               +    G    K    ++ +       +  ++     I++  N  I++
Sbjct  354  LEEIEEYIGFEIPKAIGPSKEEVMKEKAAFEEKLHAKPIIKKDKNADINK  403


 Score = 88.6 bits (218),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 59/129 (46%), Gaps = 2/129 (2%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +FS+  +  EI +A+  + +  PT++Q E IP+ L   D+++ ++TGSGKT +F IP+ 
Sbjct  4    KSFSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC  63

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDG-LCCQSREVKEW-  119
            ++V       Q      T         +   +  + R  A A+        Q  E+K+  
Sbjct  64   EMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKT  123

Query  120  HGCRATKGL  128
            H    T G 
Sbjct  124  HIVVGTPGR  132


>sp|Q81IT9|CSHA_BACCR DEAD-box ATP-dependent RNA helicase CshA 
OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 
/ JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) 
OX=226900 GN=cshA PE=2 SV=2
Length=533

 Score = 317 bits (812),  Expect = 2e-98, Method: Composition-based stats.
 Identities = 105/463 (23%), Positives = 191/463 (41%), Gaps = 75/463 (16%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             ++LGL+  +   +++     A  ++   +                 +  ++   G    
Sbjct  4    FRELGLSDSLLQSVESMGFEEATPIQAETIPHAL--------QGKDIIGQAQTGTGKTAA  55

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
                G   + +      + + +++ P+RELA Q    + +  K+    ++R L I GG  
Sbjct  56   F---GLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKH---KRVRILPIYGGQD  109

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
               Q+  L+    I+VGTPGR+ D ++   L L  V  +VLDEAD +L+ G+ + I  + 
Sbjct  110  INRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAIL  169

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
              +P      +  Q ++ SAT+    +++++E+ M  P  + +K ++     +    + V
Sbjct  170  TDVP------ETHQTLLFSATMPDP-IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEV  222

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
              K                                         K +   R +     + 
Sbjct  223  QEKK----------------------------------------KFDVLTRLLDIQSPEL  242

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
            AI+F RTK   D L +    +G         ++   +HGD    +R   L +FK+G +  
Sbjct  243  AIVFGRTKRRVDELSEALNLRG---------YAAEGIHGDLTQAKRMSVLRKFKEGSIEV  293

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            L+ TDVAARG+DI GV +V N  +P + ++YVHRIGR GRA + G+A+  V   +     
Sbjct  294  LVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLK  353

Query  629  HVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTIS  671
            ++  +  +     R+           + +L   I E L  TI 
Sbjct  354  NIERTTKRKM--DRMDAPTLDEALEGQQRL---IAEKLQSTIE  391


 Score = 107 bits (266),  Expect = 6e-23, Method: Composition-based stats.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (2%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M  F E+G+   + Q+VE M +   T IQAE+IP  L G D++  A+TG+GKT AF +P+
Sbjct  1    MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNK-WQMNPYDRGSAFAI  104
            +  V +T K+  +G     T +    V  + +++  + R     I
Sbjct  61   LDKV-DTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPI  104


>sp|Q8H136|RH14_ARATH DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis 
thaliana OX=3702 GN=RH14 PE=1 SV=2
Length=619

 Score = 320 bits (819),  Expect = 2e-98, Method: Composition-based stats.
 Identities = 104/424 (25%), Positives = 173/424 (41%), Gaps = 72/424 (17%)

Query  213  GLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHS  272
            G   E+   + +        ++                     VA++K   G  +     
Sbjct  164  GFPPELLREVLSAGFSAPTPIQAQSWPIAM--------QGRDIVAIAKTGSGKTLGYLIP  215

Query  273  GNAQVTQTKFLPN-APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARD  331
            G   + + +      P  L++ P+RELA Q      +F +   + ++    + GG     
Sbjct  216  GFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGR---SSRISCTCLYGGAPKGP  272

Query  332  QLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQI  391
            QL  LE G DIVV TPGRL+D++   +++L Q+ +LVLDEAD +L  G+   I ++  +I
Sbjct  273  QLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEI  332

Query  392  PQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSV---PDTVHHVVVPV  448
            P       + Q ++ +AT     V+K++  ++  P  V++   D +        H+ V  
Sbjct  333  PT------KRQTLMYTATWPKG-VRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVA  385

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
              +  R  E++ +S                                        +    +
Sbjct  386  PMEKQRRLEQILRS----------------------------------------QEPGSK  405

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
             IIFC TK  CD L +   +Q          F    +HGD+   ER   L +F+ G    
Sbjct  406  VIIFCSTKRMCDQLTRNLTRQ----------FGAAAIHGDKSQPERDNVLNQFRSGRTPV  455

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            L+ TDVAARG+D+  +  V+N   P+  ++YVHRIGR GRA   G A +    +  K   
Sbjct  456  LVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHAS  515

Query  629  HVCS  632
             +  
Sbjct  516  DLIK  519


 Score = 102 bits (253),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 44/106 (42%), Gaps = 5/106 (5%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F   G  PE+ + V    +  PT IQA+S P+ + G D++  A+TGSGKT  + IP 
Sbjct  157  LMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPG  216

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
               +     D + G           S   +      +    F   S
Sbjct  217  FLHLQRIRNDSRMG-----PTILVLSPTRELATQIQEEAVKFGRSS  257


>sp|Q6HPE6|CSHA_BACHK DEAD-box ATP-dependent RNA helicase CshA 
OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) OX=281309 
GN=cshA PE=3 SV=1
Length=528

 Score = 317 bits (812),  Expect = 2e-98, Method: Composition-based stats.
 Identities = 105/463 (23%), Positives = 191/463 (41%), Gaps = 75/463 (16%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             ++LGL+  +   +++     A  ++   +                 +  ++   G    
Sbjct  4    FRELGLSDSLLQSVESMGFEEATPIQAETIPHAL--------QGKDIIGQAQTGTGKTAA  55

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
                G   + +      + + +++ P+RELA Q    + +  K+    ++R L I GG  
Sbjct  56   F---GLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKH---KRVRILPIYGGQD  109

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
               Q+  L+    I+VGTPGR+ D ++   L L  V  +VLDEAD +L+ G+ + I  + 
Sbjct  110  INRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAIL  169

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
              +P      +  Q ++ SAT+    +++++E+ M  P  + +K ++     +    + V
Sbjct  170  TDVP------ETHQTLLFSATMPDP-IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEV  222

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
              K                                         K +   R +     + 
Sbjct  223  QEKK----------------------------------------KFDVLTRLLDIQSPEL  242

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
            AI+F RTK   D L +    +G         ++   +HGD    +R   L +FK+G +  
Sbjct  243  AIVFGRTKRRVDELSEALNLRG---------YAAEGIHGDLTQAKRMSVLRKFKEGSIEV  293

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            L+ TDVAARG+DI GV +V N  +P + ++YVHRIGR GRA + G+A+  V   +     
Sbjct  294  LVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLK  353

Query  629  HVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTIS  671
            ++  +  +     R+           + +L   I E L  TI 
Sbjct  354  NIERTTKRKM--DRMDAPTLDEALEGQQRL---IAEKLQSTIE  391


 Score = 107 bits (266),  Expect = 6e-23, Method: Composition-based stats.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (2%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M  F E+G+   + Q+VE M +   T IQAE+IP  L G D++  A+TG+GKT AF +P+
Sbjct  1    MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNK-WQMNPYDRGSAFAI  104
            +  V +T K+  +G     T +    V  + +++  + R     I
Sbjct  61   LDKV-DTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPI  104


>sp|Q81VG0|CSHA_BACAN DEAD-box ATP-dependent RNA helicase CshA 
OS=Bacillus anthracis OX=1392 GN=cshA PE=3 SV=1
Length=528

 Score = 317 bits (812),  Expect = 2e-98, Method: Composition-based stats.
 Identities = 105/463 (23%), Positives = 191/463 (41%), Gaps = 75/463 (16%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             ++LGL+  +   +++     A  ++   +                 +  ++   G    
Sbjct  4    FRELGLSDSLLQSVESMGFEEATPIQAETIPHAL--------QGKDIIGQAQTGTGKTAA  55

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
                G   + +      + + +++ P+RELA Q    + +  K+    ++R L I GG  
Sbjct  56   F---GLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKH---KRVRILPIYGGQD  109

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
               Q+  L+    I+VGTPGR+ D ++   L L  V  +VLDEAD +L+ G+ + I  + 
Sbjct  110  INRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAIL  169

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
              +P      +  Q ++ SAT+    +++++E+ M  P  + +K ++     +    + V
Sbjct  170  TDVP------ETHQTLLFSATMPDP-IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEV  222

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
              K                                         K +   R +     + 
Sbjct  223  QEKK----------------------------------------KFDVLTRLLDIQSPEL  242

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
            AI+F RTK   D L +    +G         ++   +HGD    +R   L +FK+G +  
Sbjct  243  AIVFGRTKRRVDELSEALNLRG---------YAAEGIHGDLTQAKRMSVLRKFKEGSIEV  293

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            L+ TDVAARG+DI GV +V N  +P + ++YVHRIGR GRA + G+A+  V   +     
Sbjct  294  LVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLK  353

Query  629  HVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTIS  671
            ++  +  +     R+           + +L   I E L  TI 
Sbjct  354  NIERTTKRKM--DRMDAPTLDEALEGQQRL---IAEKLQSTIE  391


 Score = 107 bits (266),  Expect = 6e-23, Method: Composition-based stats.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (2%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M  F E+G+   + Q+VE M +   T IQAE+IP  L G D++  A+TG+GKT AF +P+
Sbjct  1    MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNK-WQMNPYDRGSAFAI  104
            +  V +T K+  +G     T +    V  + +++  + R     I
Sbjct  61   LDKV-DTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPI  104


>sp|A0R8U6|CSHA_BACAH DEAD-box ATP-dependent RNA helicase CshA 
OS=Bacillus thuringiensis (strain Al Hakam) OX=412694 GN=cshA 
PE=3 SV=1
Length=528

 Score = 317 bits (812),  Expect = 2e-98, Method: Composition-based stats.
 Identities = 105/463 (23%), Positives = 191/463 (41%), Gaps = 75/463 (16%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             ++LGL+  +   +++     A  ++   +                 +  ++   G    
Sbjct  4    FRELGLSDSLLQSVESMGFEEATPIQAETIPHAL--------QGKDIIGQAQTGTGKTAA  55

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
                G   + +      + + +++ P+RELA Q    + +  K+    ++R L I GG  
Sbjct  56   F---GLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKH---KRVRILPIYGGQD  109

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
               Q+  L+    I+VGTPGR+ D ++   L L  V  +VLDEAD +L+ G+ + I  + 
Sbjct  110  INRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAIL  169

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
              +P      +  Q ++ SAT+    +++++E+ M  P  + +K ++     +    + V
Sbjct  170  TDVP------ETHQTLLFSATMPDP-IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEV  222

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
              K                                         K +   R +     + 
Sbjct  223  QEKK----------------------------------------KFDVLTRLLDIQSPEL  242

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
            AI+F RTK   D L +    +G         ++   +HGD    +R   L +FK+G +  
Sbjct  243  AIVFGRTKRRVDELSEALNLRG---------YAAEGIHGDLTQAKRMSVLRKFKEGSIEV  293

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            L+ TDVAARG+DI GV +V N  +P + ++YVHRIGR GRA + G+A+  V   +     
Sbjct  294  LVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLK  353

Query  629  HVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTIS  671
            ++  +  +     R+           + +L   I E L  TI 
Sbjct  354  NIERTTKRKM--DRMDAPTLDEALEGQQRL---IAEKLQSTIE  391


 Score = 107 bits (266),  Expect = 6e-23, Method: Composition-based stats.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (2%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M  F E+G+   + Q+VE M +   T IQAE+IP  L G D++  A+TG+GKT AF +P+
Sbjct  1    MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNK-WQMNPYDRGSAFAI  104
            +  V +T K+  +G     T +    V  + +++  + R     I
Sbjct  61   LDKV-DTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPI  104


>sp|Q73EU1|CSHA_BACC1 DEAD-box ATP-dependent RNA helicase CshA 
OS=Bacillus cereus (strain ATCC 10987 / NRS 248) OX=222523 
GN=cshA PE=3 SV=1
Length=525

 Score = 317 bits (811),  Expect = 2e-98, Method: Composition-based stats.
 Identities = 101/453 (22%), Positives = 189/453 (42%), Gaps = 72/453 (16%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             ++LGL+  +   +++     A  ++   +                 +  ++   G    
Sbjct  4    FRELGLSDSLLQSVESMGFEEATPIQAETIPHAL--------QGKDIIGQAQTGTGKTAA  55

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
                G   + +      + + +++ P+RELA Q    + +  K+    ++R L I GG  
Sbjct  56   F---GLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKH---KRVRILPIYGGQD  109

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
               Q+  L+    I+VGTPGR+ D ++   L L  V  +VLDEAD +L+ G+ + I  + 
Sbjct  110  INRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAIL  169

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
              +P      +  Q ++ SAT+    +++++E+ M  P  + +K ++     +    + V
Sbjct  170  TDVP------ETHQTLLFSATMPDP-IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEV  222

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
              K                                         K +   R +     + 
Sbjct  223  QEKK----------------------------------------KFDVLTRLLDIQSPEL  242

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
            AI+F RTK   D L +    +G         ++   +HGD    +R   L +FK+G +  
Sbjct  243  AIVFGRTKRRVDELSEALNLRG---------YAAEGIHGDLTQAKRMSVLRKFKEGSIEV  293

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            L+ TDVAARG+DI GV +V N  +P + ++YVHRIGR GRA + G+A+  V   +     
Sbjct  294  LVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLK  353

Query  629  HVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE  661
            ++  +  +     R+           + +L++E
Sbjct  354  NIERTTKRKM--DRMDAPTLDEALEGQQRLIAE  384


 Score = 106 bits (265),  Expect = 6e-23, Method: Composition-based stats.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (2%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M  F E+G+   + Q+VE M +   T IQAE+IP  L G D++  A+TG+GKT AF +P+
Sbjct  1    MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNK-WQMNPYDRGSAFAI  104
            +  V +T K+  +G     T +    V  + +++  + R     I
Sbjct  61   LDKV-DTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPI  104


>sp|Q9VHP0|DDX3_DROME ATP-dependent RNA helicase bel OS=Drosophila 
melanogaster OX=7227 GN=bel PE=1 SV=1
Length=798

 Score = 324 bits (831),  Expect = 2e-98, Method: Composition-based stats.
 Identities = 102/406 (25%), Positives = 168/406 (41%), Gaps = 60/406 (15%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP------------NAPKALIVEP  294
                     +A ++   G           Q+ +   +P              P  L++ P
Sbjct  327  PIIINGRDLMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAP  386

Query  295  SRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV  354
            +RELA Q     K+F       ++R  ++ GG    +Q+  L+ G  ++V TPGRL+D++
Sbjct  387  TRELATQIFEEAKKFA---YRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGRLEDMI  443

Query  355  STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFD  414
            + GK+ L  +RFLVLDEAD +L  G+   I R+  Q+        + Q ++ SAT     
Sbjct  444  TRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLN--MPPTGQRQTLMFSATFPKQ-  500

Query  415  VKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDN  474
            +++L+   +    ++ +    S  + +   ++ V     R +     S IR    + KD+
Sbjct  501  IQELASDFLSNYIFLAVGRVGSTSENITQTILWVYEPDKRSYLLDLLSSIRDGPEYTKDS  560

Query  475  TRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPD  534
                                               +IF  TK   D+LE++  Q      
Sbjct  561  L---------------------------------TLIFVETKKGADSLEEFLYQ------  581

Query  535  KKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD  594
                      +HGDR   ER++ L  F+ GD   L+ T VAARG+DI  V +VIN  LP 
Sbjct  582  ---CNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPS  638

Query  595  EKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYN  640
            + + YVHRIGR GR   +G+A S    +   +   +     +    
Sbjct  639  DVEEYVHRIGRTGRMGNLGVATSFFNEKNRNICSDLLELLIETKQE  684


 Score = 107 bits (268),  Expect = 9e-23, Method: Composition-based stats.
 Identities = 34/148 (23%), Positives = 65/148 (44%), Gaps = 17/148 (11%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F ++ +   I   V    +  PT +Q  +IP+I+ G D++  A+TGSGKT AF +P+
Sbjct  294  ITSFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPI  353

Query  61   IQIVYET------LKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS--------  106
            +  +YE          +Q  ++ +  +    +   +     ++    FA  S        
Sbjct  354  LNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLY  413

Query  107  --DGLCCQSREV-KEWHGCRATKGLMKG  131
              +    Q RE+ +  H   AT G ++ 
Sbjct  414  GGNNTSEQMRELDRGCHLIVATPGRLED  441


>sp|Q63GX5|CSHA_BACCZ DEAD-box ATP-dependent RNA helicase CshA 
OS=Bacillus cereus (strain ZK / E33L) OX=288681 GN=cshA PE=3 
SV=1
Length=528

 Score = 317 bits (811),  Expect = 2e-98, Method: Composition-based stats.
 Identities = 101/457 (22%), Positives = 190/457 (42%), Gaps = 72/457 (16%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             ++LGL+  +   +++     A  ++   +                 +  ++   G    
Sbjct  4    FRELGLSDSLLQSVESMGFEEATPIQAETIPHAL--------QGKDIIGQAQTGTGKTAA  55

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
                G   + +      + + +++ P+RELA Q    + +  K+    ++R L I GG  
Sbjct  56   F---GLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKH---KRVRILPIYGGQD  109

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
               Q+  L+    I+VGTPGR+ D ++   L L  V  +VLDEAD +L+ G+ + I  + 
Sbjct  110  INRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAIL  169

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
              +P      +  Q ++ SAT+    +++++E+ M  P  + +K ++     +    + V
Sbjct  170  TDVP------ETHQTLLFSATMPDP-IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEV  222

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
              K                                         K +   R +     + 
Sbjct  223  QEKK----------------------------------------KFDVLTRLLDIQSPEL  242

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
            AI+F RTK   D L +    +G         ++   +HGD    +R   L +FK+G +  
Sbjct  243  AIVFGRTKRRVDELSEALNLRG---------YAAEGIHGDLTQAKRMSVLRKFKEGSIEV  293

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            L+ TDVAARG+DI GV +V N  +P + ++YVHRIGR GRA + G+A+  V   +     
Sbjct  294  LVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLK  353

Query  629  HVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEH  665
            ++  +  +     R+           + +L++E  + 
Sbjct  354  NIERTTKRKM--DRMDAPTLDEALEGQQRLIAEKLQS  388


 Score = 106 bits (265),  Expect = 7e-23, Method: Composition-based stats.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (2%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M  F E+G+   + Q+VE M +   T IQAE+IP  L G D++  A+TG+GKT AF +P+
Sbjct  1    MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNK-WQMNPYDRGSAFAI  104
            +  V +T K+  +G     T +    V  + +++  + R     I
Sbjct  61   LDKV-DTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPI  104


>sp|Q65N62|CSHA_BACLD DEAD-box ATP-dependent RNA helicase CshA 
OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 
2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL 
NRS-1264 / Gibson 46) OX=279010 GN=cshA PE=3 SV=1
Length=487

 Score = 315 bits (807),  Expect = 3e-98, Method: Composition-based stats.
 Identities = 99/433 (23%), Positives = 185/433 (43%), Gaps = 70/433 (16%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
            +   +D  L+ ++   +K      A  ++   +      ++         +  ++   G 
Sbjct  2    TITFQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKD--------VIGQAQTGTGK  53

Query  266  IVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
                   G   V +        +A+++ P+RELA Q    + +  +   + + R L I G
Sbjct  54   TAAF---GIPLVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQ---DKRARVLPIYG  107

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            G     Q+  L+    I+VGTPGRL D ++   + L  V  +VLDEAD +L+ G+ + I 
Sbjct  108  GQDIGRQIRALKKNPHIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIE  167

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
             + + +P         Q ++ SAT+ +  +K+++E+ M  P  V +K ++     +    
Sbjct  168  SILSNVPA------EHQTLLFSATMPAP-IKRIAERFMTNPEHVKVKAKEMTVSNIQQFY  220

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
            + V+ +                                         K +   R +    
Sbjct  221  LEVHERK----------------------------------------KFDTLTRLLDIQS  240

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             + AI+F RTK   D L +    +G         ++   +HGD    +R   L +FK+G 
Sbjct  241  PELAIVFGRTKRRVDELTEALNLRG---------YTAEGIHGDLTQAKRMVALRKFKQGA  291

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+DI GV +V N  +P + ++YVHRIGR GRA + G+A++ +   ++ 
Sbjct  292  IEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKD  351

Query  626  VWYHVCSSRGKGC  638
            +   +  +  +  
Sbjct  352  MLRAIEQTTKRKM  364


 Score = 98.3 bits (243),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 0/70 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F +  +  ++ +A++ M +   T IQA++IPL L   DV+  A+TG+GKT AF IP+++
Sbjct  4   TFQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVE  63

Query  63  IVYETLKDQQ  72
            +     + Q
Sbjct  64  KINPESPNIQ  73


>sp|O00571|DDX3X_HUMAN ATP-dependent RNA helicase DDX3X OS=Homo 
sapiens OX=9606 GN=DDX3X PE=1 SV=3
Length=662

 Score = 320 bits (821),  Expect = 3e-98, Method: Composition-based stats.
 Identities = 96/410 (23%), Positives = 157/410 (38%), Gaps = 69/410 (17%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKF---------------LPNAPKALI  291
                 K   +A ++   G          +Q+                        P +L+
Sbjct  212  PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLV  271

Query  292  VEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLD  351
            + P+RELA Q     ++F       ++R  ++ GG     Q+  LE G  ++V TPGRL 
Sbjct  272  LAPTRELAVQIYEEARKFS---YRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLV  328

Query  352  DLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLH  411
            D++  GK+ L   ++LVLDEAD +L  G+   I R+  Q             ++ SAT  
Sbjct  329  DMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ--DTMPPKGVRHTMMFSATFP  386

Query  412  SFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHA  471
              +++ L+   +    ++ +    S  + +   VV V     R +               
Sbjct  387  K-EIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSF---------------  430

Query  472  KDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGG  531
                                             K    ++F  TK   D+LE +   +G 
Sbjct  431  ------------------------LLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG-  465

Query  532  GPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT  591
                    ++C  +HGDR   +R++ L +F+ G    L+ T VAARG+DI  V +VIN  
Sbjct  466  --------YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFD  517

Query  592  LPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
            LP + + YVHRIGR GR   +GLA S        +   +     +     
Sbjct  518  LPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEV  567


 Score = 100 bits (250),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 61/394 (15%), Positives = 133/394 (34%), Gaps = 84/394 (21%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +FS++ +   I   +E   +  PT +Q  +IP+I    D++  A+TGSGKT AF +P+
Sbjct  179  IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI  238

Query  61   IQIVY--------ETLKDQ-QEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS-----  106
            +  +Y          +K+  + G++ +  I    +   +  +  Y+    F+  S     
Sbjct  239  LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC  298

Query  107  -----DGLCCQSREVKEW-HGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGT  160
                   +  Q R+++   H   AT G +       V   ++G  ++G         +  
Sbjct  299  VVYGGADIGQQIRDLERGCHLLVATPGRL-------VDMMERG--KIG--LDFCKYLVLD  347

Query  161  DKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPP  220
            +           +  +  F+         DT+                          P 
Sbjct  348  EAD---------RMLDMGFEPQIRRIVEQDTM-------------------------PPK  373

Query  221  HMKNQALFPACVLKNAEL--KFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVT  278
             +++  +F A   K  ++  +    E  F    + G  + +       V+     +  + 
Sbjct  374  GVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLD  433

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
                       L+   ++             + ++ +       I G  + RD+   L  
Sbjct  434  LLNATGKDSLTLVFVETK-------KGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQ  486

Query  339  ----GVDIVVGTPGRLDDLVSTGKLNLSQVRFLV  368
                   I+V T       V+   L++S V+ ++
Sbjct  487  FRSGKSPILVAT------AVAARGLDISNVKHVI  514


>sp|Q81DF9|CSHE_BACCR DEAD-box ATP-dependent RNA helicase CshE 
OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 
/ JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) 
OX=226900 GN=cshE PE=2 SV=1
Length=458

 Score = 314 bits (805),  Expect = 3e-98, Method: Composition-based stats.
 Identities = 114/452 (25%), Positives = 194/452 (43%), Gaps = 69/452 (15%)

Query  203  VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAP  262
            + + KN  +LG++      ++   +  A  ++   +                 +  +K  
Sbjct  1    MVYLKNFLELGISETFNHTLRENGITEATPIQEKAIPVILS--------GKDIIGQAKTG  52

Query  263  DGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
             G  +        ++       +  +ALIV P+RELA Q    IK+    +    +  L 
Sbjct  53   TGKTLAFVLPILEKI---DPECSDVQALIVAPTRELALQITTEIKKML--VQREDINVLA  107

Query  323  IIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD  382
            I GG     QL  L+    IVV TPGRL D +    ++LS +  +VLDEAD +L  G+  
Sbjct  108  IYGGQDVAQQLRKLKGNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLY  167

Query  383  FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH  442
             I  + ++ P         Q ++ SAT+   D+KKL+++ M  P  + ++ E+   DT+ 
Sbjct  168  DIEDILDETPGSK------QTMLFSATMPK-DIKKLAKRYMDEPQMIQVQSEEVTVDTIE  220

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
              V+                                        E     K +     + 
Sbjct  221  QRVI----------------------------------------ETTDRAKPDALRFVMD  240

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
              +   A+IFCRTK+    L             KG  ++C  LHGD    +R++ ++ F+
Sbjct  241  RDQPFLAVIFCRTKVRASKLYDNL---------KGLGYNCAELHGDIPQAKRERVMKSFR  291

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            +  +++LI TDVAARG+D+ GV +V N  +P++ ++Y+HRIGR GRA   GLAI+ VA +
Sbjct  292  EAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAK  351

Query  623  KEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYN  654
             EK    +  + G       +++     +  N
Sbjct  352  DEKHLEEIEKTLGAPIQREIIEQPKIKRVDEN  383


 Score = 95.2 bits (235),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 9/109 (8%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E+G+       + E      T IQ ++IP+IL G D++  A+TG+GKT AF +P+
Sbjct  4    LKNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPI  63

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGL  109
            ++ +     D Q             +   +  +          +  + +
Sbjct  64   LEKIDPECSDVQ---------ALIVAPTRELALQITTEIKKMLVQREDI  103


>sp|Q6CT85|RRP3_KLULA ATP-dependent rRNA helicase RRP3 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / 
NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=RRP3 PE=3 SV=1
Length=487

 Score = 315 bits (806),  Expect = 4e-98, Method: Composition-based stats.
 Identities = 108/463 (23%), Positives = 177/463 (38%), Gaps = 76/463 (16%)

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFL-----PNAPK-ALIVEP  294
            N    +             K  D   +    SG         L        P  A I+ P
Sbjct  84   NLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYYACILAP  143

Query  295  SRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV  354
            +RELA+Q           +    +R   I+GG++  DQ   L     I++ TPGRL D +
Sbjct  144  TRELAQQIKETFDSLGSLMG---VRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLMDHL  200

Query  355  -STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSF  413
             +T   NL ++++LV+DEAD LL   +   ++R+ N IP      +     + SAT+ S 
Sbjct  201  ENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIP-----TQGRTTYLFSATMTS-  254

Query  414  DVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKD  473
             + KL    +  P    +  +    DT+   ++ V                         
Sbjct  255  KIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVP------------------------  290

Query  474  NTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGP  533
                              LK  + +  + E      I+F RTK + + +           
Sbjct  291  ----------------GGLKNTFLIYLLNEFIGKSTIVFTRTKANAERISNL--------  326

Query  534  DKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP  593
                 +FS   LHGD   ++R   L+ FK G    L+ TDVAARG+DI  V  VIN  +P
Sbjct  327  -CNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIP  385

Query  594  DEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWY  653
             + ++Y+HR+GR  RA R G +ISLV+    ++   +    GK      + +D       
Sbjct  386  VDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGKKLPKENVDKDA------  439

Query  654  NEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAA  696
                 +  + + ++    +V  ++     E   +    + R A
Sbjct  440  -----ILALRDSVDKANGEVVMELNRRNKEKQARGKGRRGRMA  477


 Score = 101 bits (251),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 48/69 (70%), Gaps = 3/69 (4%)

Query  5    SEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIV  64
            +E+ ++PE+ +A + +++  PT IQ+++IP  L G D++  A+TGSGKT AF+IP++  +
Sbjct  70   TELDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQL  129

Query  65   YETLKDQQE  73
            +    DQQ 
Sbjct  130  WH---DQQP  135


>sp|Q29S22|DDX47_BOVIN Probable ATP-dependent RNA helicase DDX47 
OS=Bos taurus OX=9913 GN=DDX47 PE=2 SV=1
Length=457

 Score = 313 bits (803),  Expect = 4e-98, Method: Composition-based stats.
 Identities = 104/500 (21%), Positives = 185/500 (37%), Gaps = 73/500 (15%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
            +K  KDLG+   +              ++   +                 + L++   G 
Sbjct  25   TKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLAL--------QGRDIIGLAETGSGK  76

Query  266  IVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
                       +      P    AL++ P+RELA Q     +       +  ++  +I+G
Sbjct  77   TGAFALPI---LNALLETPQRLFALVLTPTRELAFQISEQFEALG---SSIGVQCAVIVG  130

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            G+ +  Q   L     IV+ TPGRL D + +T   NL  +++LV+DEAD +L+  +   +
Sbjct  131  GIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEV  190

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
            +++   IP      +  +  + SAT+    V+KL    +  P    +  +    + +   
Sbjct  191  DKILKVIP------RDRKTFLFSATMTK-KVQKLQRAALKNPVKCAVSSKYQTVEKLQQY  243

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
             + +  K                                         K  Y V  + E 
Sbjct  244  YLFIPSK----------------------------------------FKDTYLVYILNEL  263

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
              +  +IFC T  +           G         F+ + LHG     +R  +L +FK  
Sbjct  264  AGNSFMIFCSTCNNTQRTALLLRNLG---------FTAIPLHGQMSQSKRLGSLNKFKAK  314

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
                L+ TDVA+RG+DI  V  V+N  +P   ++Y+HR+GR  RA R G AI+ V     
Sbjct  315  ARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDV  374

Query  625  KVWYHVCSSRGKGC--YNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVD  682
            +++  +    GK    + T+  E    T    E Q  + +E   +    +   +     D
Sbjct  375  ELFQRIEHLIGKKLPVFPTQDDEVMMLTERVTEAQRFARMELREHGEKKKRSREDVGDND  434

Query  683  EFDGKVTYGQKRAAGGGSYK  702
            + +G +    K A G    +
Sbjct  435  DTEGAIGVRNKVAGGKMKKR  454


 Score = 103 bits (257),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 9/110 (8%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F ++GV   + +A +++ W  PT IQ E+IPL L G D++  AETGSGKTGAF++P++
Sbjct  26   KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL  85

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
              + ET          +       +   +      ++  A        C 
Sbjct  86   NALLET---------PQRLFALVLTPTRELAFQISEQFEALGSSIGVQCA  126


>sp|Q9H0S4|DDX47_HUMAN Probable ATP-dependent RNA helicase DDX47 
OS=Homo sapiens OX=9606 GN=DDX47 PE=1 SV=1
Length=455

 Score = 313 bits (803),  Expect = 4e-98, Method: Composition-based stats.
 Identities = 103/500 (21%), Positives = 185/500 (37%), Gaps = 73/500 (15%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
            +K  KDLG+   +              ++   +                 + L++   G 
Sbjct  23   TKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLAL--------QGRDIIGLAETGSGK  74

Query  266  IVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
                       +      P    AL++ P+RELA Q     +       +  ++  +I+G
Sbjct  75   TGAFALPI---LNALLETPQRLFALVLTPTRELAFQISEQFEALG---SSIGVQSAVIVG  128

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            G+ +  Q   L     I++ TPGRL D + +T   NL  +++LV+DEAD +L+  +   +
Sbjct  129  GIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEV  188

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
            +++   IP      +  +  + SAT+    V+KL    +  P    +  +    + +   
Sbjct  189  DKILKVIP------RDRKTFLFSATMTK-KVQKLQRAALKNPVKCAVSSKYQTVEKLQQY  241

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
             + +  K                                         K  Y V  + E 
Sbjct  242  YIFIPSK----------------------------------------FKDTYLVYILNEL  261

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
              +  +IFC T  +           G         F+ + LHG     +R  +L +FK  
Sbjct  262  AGNSFMIFCSTCNNTQRTALLLRNLG---------FTAIPLHGQMSQSKRLGSLNKFKAK  312

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
                L+ TDVA+RG+DI  V  V+N  +P   ++Y+HR+GR  RA R G AI+ V     
Sbjct  313  ARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDV  372

Query  625  KVWYHVCSSRGKGC--YNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVD  682
            +++  +    GK    + T+  E    T    E Q  + +E   +    +   +     D
Sbjct  373  ELFQRIEHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREHGEKKKRSREDAGDND  432

Query  683  EFDGKVTYGQKRAAGGGSYK  702
            + +G +    K A G    +
Sbjct  433  DTEGAIGVRNKVAGGKMKKR  452


 Score = 102 bits (254),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 61/139 (44%), Gaps = 20/139 (14%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F ++GV   + +A +++ W  PT IQ E+IPL L G D++  AETGSGKTGAF++P++
Sbjct  24   KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL  83

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI-----------GSDGLC  110
              + ET          +       +   +      ++  A              G D + 
Sbjct  84   NALLET---------PQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMS  134

Query  111  CQSREVKEWHGCRATKGLM  129
                  K+ H   AT G +
Sbjct  135  QSLALAKKPHIIIATPGRL  153


>sp|Q8LA13|RH11_ARATH DEAD-box ATP-dependent RNA helicase 11 OS=Arabidopsis 
thaliana OX=3702 GN=RH11 PE=1 SV=1
Length=612

 Score = 318 bits (816),  Expect = 5e-98, Method: Composition-based stats.
 Identities = 102/397 (26%), Positives = 162/397 (41%), Gaps = 57/397 (14%)

Query  252  KDGFVALSKAPDGYIVKSQHSGNA--QVTQTKFLPNA-----PKALIVEPSRELAEQTLN  304
            +   +A ++   G          +     Q    P       P A+I+ P+RELA Q  +
Sbjct  188  ERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHD  247

Query  305  NIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQV  364
              K+F        ++ ++  GG     QL  LE G DI+V TPGRL+DL+   ++++  +
Sbjct  248  EAKKFS---YQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMI  304

Query  365  RFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH  424
            RFL LDEAD +L  G+   I ++  Q+          Q ++ SAT  S  +++L+   M 
Sbjct  305  RFLALDEADRMLDMGFEPQIRKIVEQMD--MPPRGVRQTMLFSATFPSQ-IQRLAADFMS  361

Query  425  FPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEM  484
               ++ +    S  D +   V  V     R                              
Sbjct  362  NYIFLAVGRVGSSTDLITQRVEFVQESDKR------------------------------  391

Query  485  WSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC  544
                   L      +   + K    ++F  TK   D LE +            ++F    
Sbjct  392  -----SHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCM---------NEFPATS  437

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            +HGDR   ER+  L  FK G    L+ TDVAARG+DI  V +V+N  LP++  +YVHRIG
Sbjct  438  IHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIG  497

Query  605  RVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
            R GRA + G+A +       ++   +     +     
Sbjct  498  RTGRAGKSGIATAFFNENNAQLARSLAELMQEANQEV  534


 Score = 102 bits (255),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 52/107 (49%), Gaps = 7/107 (7%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F+++ +   +   +    ++ PT +Q  +IP++L   D++  A+TGSGKT AF  P+
Sbjct  150  VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPI  209

Query  61   IQIVYETLKDQQ-EGKKGKTTIKTGA---SVLNKWQMNPYDRGSAFA  103
            I  +   +KDQ  E  +G   +   A   S   +     +D    F+
Sbjct  210  ISGI---MKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFS  253


>sp|Q5A4E2|DED1_CANAL ATP-dependent RNA helicase DED1 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DED1 
PE=3 SV=1
Length=672

 Score = 320 bits (820),  Expect = 5e-98, Method: Composition-based stats.
 Identities = 96/355 (27%), Positives = 151/355 (43%), Gaps = 55/355 (15%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P  L++ P+REL  Q     K+F        +R  ++ GG     Q+  ++ G D++V T
Sbjct  270  PTILVMAPTRELVSQIYEESKKFS---YRSWVRACVVYGGADIGQQMRNMDRGCDLLVAT  326

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL DL+  GK++L+ +R+LVLDEAD +L  G+   I  +  +        K  Q ++ 
Sbjct  327  PGRLKDLLDRGKVSLANIRYLVLDEADRMLDMGFEPQIRYIVEECD--MPAVKDRQTLMF  384

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT    D++ L+   +    ++ +    S  + +   ++ V                  
Sbjct  385  SATFP-RDIQMLARDFLKDYVFLSVGRVGSTSENITQKILYVEDDE--------------  429

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                                      K    +  +  ++    I+F  TK   DNL  Y 
Sbjct  430  --------------------------KKSVILDLLSANENGLTIVFTETKRMADNLADYL  463

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
              QG         F    +HGDR  +ER++ L  FK G    L+ T VAARG+DI  V +
Sbjct  464  YDQG---------FPATAIHGDRSQYEREKALAAFKNGAAPILVATAVAARGLDIPNVSH  514

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
            VIN  LP +  +YVHRIGR GRA  +G+A +      + V   +     +     
Sbjct  515  VINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNKNVVKGLIELLSEANQEV  569


 Score = 93.3 bits (230),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 6/112 (5%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F+   +   + + ++   +  PT +Q  S+P++  G D++  A+TGSGKTG F  PV
Sbjct  185  ITSFTAPPLDELLVENIQLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPV  244

Query  61   IQIVYETLKDQQEGKKGK------TTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            +   Y           G              +   +     Y+    F+  S
Sbjct  245  LSESYMKGPAPVPESNGAFSSHKVYPTILVMAPTRELVSQIYEESKKFSYRS  296


>sp|A5A6J2|DDX5_PANTR Probable ATP-dependent RNA helicase DDX5 
OS=Pan troglodytes OX=9598 GN=DDX5 PE=2 SV=1
Length=614

 Score = 318 bits (815),  Expect = 6e-98, Method: Composition-based stats.
 Identities = 106/470 (23%), Positives = 178/470 (38%), Gaps = 72/470 (15%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
             N  +      +   +  Q       ++           +         V +++   G  
Sbjct  94   LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLD--------MVGVAQTGSGKT  145

Query  267  VKSQHSGNAQVTQTKFLP--NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
            +         +    FL   + P  L++ P+RELA+Q         +Y    +L+   I 
Sbjct  146  LSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVA---AEYCRACRLKSTCIY  202

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG     Q+  LE GV+  + TPGRL D +  GK NL +  +LVLDEAD +L  G+   I
Sbjct  203  GGAPKGPQIRDLERGVENCIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQI  262

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG-EDSVPDTVHH  443
             ++ +QI          Q ++ SAT    +V++L+E  +     +++   E S    +  
Sbjct  263  RKIVDQI------RPDRQTLMWSATWPK-EVRQLAEDFLKDYIHINIGALELSANHNILQ  315

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
            +V   +                                     +  K  K    +  I  
Sbjct  316  IVDVCH-------------------------------------DVEKDEKLIRLMEEIMS  338

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
             K ++ I+F  TK  CD L +   + G         +  + +HGD+   ER   L  FK 
Sbjct  339  EKENKTIVFVETKRRCDELTRKMRRDG---------WPAMGIHGDKSQQERDWVLNEFKH  389

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
            G    LI TDVA+RG+D+  V +VIN   P+  ++Y+HRIGR  R+ + G A +      
Sbjct  390  GKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN  449

Query  624  EKVWYHVCSSRGKGCYN-----TRLKEDGGCTIWYNEMQLLSEIEEHLNC  668
             K    + S   +          +L ED G         +  +  +  + 
Sbjct  450  IKQVSDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSA  499


 Score = 88.3 bits (217),  Expect = 9e-17, Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 41/94 (44%), Gaps = 4/94 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E      +   +   ++  PT IQA+  P+ L G D++  A+TGSGKT ++ +P 
Sbjct  93   VLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPA  152

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
            I  +      Q   ++G   I    +   +    
Sbjct  153  IVHI----NHQPFLERGDGPICLVLAPTRELAQQ  182


>sp|A6QRQ7|RRP3_AJECN ATP-dependent rRNA helicase RRP3 OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=RRP3 PE=3 
SV=1
Length=485

 Score = 314 bits (804),  Expect = 6e-98, Method: Composition-based stats.
 Identities = 107/504 (21%), Positives = 187/504 (37%), Gaps = 83/504 (16%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
            +K+ KDLG+   +    +         ++   +                 + L++   G 
Sbjct  58   TKSFKDLGIIDSLCEACEALGYKSPTPIQAESIPLAL--------QGRDLIGLAETGSGK  109

Query  266  IVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
                       +      P +   LI+ P+RELA Q     +     I    +R  +I+G
Sbjct  110  TAAFALPI---LQALMNKPQSLFGLILAPTRELACQISEAFEALGSLIS---VRCAVIVG  163

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            G+    Q   L     I+V TPGRL D + +T   +L  +++LV+DEAD LL   +   +
Sbjct  164  GMDMVSQAISLGKKPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPIL  223

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED-SVPDTVHH  443
            +++   +P      +  +  + SAT+ S  V+ L    +  P  V +         T+  
Sbjct  224  DKILKVLP------RERRTYLFSATM-SSKVESLQRASLSNPLRVSISSNKYQTVATLLQ  276

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
              + +  K                                         K  Y V  + E
Sbjct  277  SYLFIPHK----------------------------------------YKDIYLVYLLNE  296

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
            +    AI+F RT  +   L       G         F  + LHG      R   L +F+ 
Sbjct  297  YAGQSAIVFTRTVNETQRLAILLRALG---------FGSIPLHGQLSQSSRLGALSKFRS  347

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
                 L+ TDVAARG+DI  V  V+N  LP + + Y+HR+GR  RA + G A S+V    
Sbjct  348  RSRDILVATDVAARGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYD  407

Query  624  EKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDE  683
             +VW  + ++ GK     +++++    +       + E + H    +  +          
Sbjct  408  IEVWLRIENALGKKLDEYKVEKEEVMVL----SDRVGEAQRHAITEMKDLH-----EKRG  458

Query  684  FDGKVTYGQKRAAGGGSYKGHVDI  707
              G    G++ A G  + +G  ++
Sbjct  459  SRGATLKGRRPAKG--AKRGRDEM  480


 Score = 104 bits (260),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 9/110 (8%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +F ++G++  + +A E + +  PT IQAESIPL L G D++  AETGSGKT AF++P++
Sbjct  59   KSFKDLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPIL  118

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
            Q +           K ++      +   +      +   A        C 
Sbjct  119  QALM---------NKPQSLFGLILAPTRELACQISEAFEALGSLISVRCA  159


>sp|P16381|DDX3L_MOUSE Putative ATP-dependent RNA helicase Pl10 
OS=Mus musculus OX=10090 GN=D1Pas1 PE=1 SV=1
Length=660

 Score = 319 bits (818),  Expect = 8e-98, Method: Composition-based stats.
 Identities = 96/410 (23%), Positives = 157/410 (38%), Gaps = 69/410 (17%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKF---------------LPNAPKALI  291
                 K   +A ++   G          +Q+                        P +L+
Sbjct  211  PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALRAMKENGKYGRRKQYPISLV  270

Query  292  VEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLD  351
            + P+RELA Q     ++F       ++R  ++ GG     Q+  LE G  ++V TPGRL 
Sbjct  271  LAPTRELAVQIYEEARKFS---YRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLV  327

Query  352  DLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLH  411
            D++  GK+ L   ++LVLDEAD +L  G+   I R+  Q             ++ SAT  
Sbjct  328  DMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ--DTMPPKGVRHTMMFSATFP  385

Query  412  SFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHA  471
              +++ L+   +    ++ +    S  + +   VV V     R +               
Sbjct  386  K-EIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEADKRSF---------------  429

Query  472  KDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGG  531
                                             K    ++F  TK   D+LE +   +G 
Sbjct  430  ------------------------LLDLLNATGKDSLILVFVETKKGADSLEDFLYHEG-  464

Query  532  GPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT  591
                    ++C  +HGDR   +R++ L +F+ G    L+ T VAARG+DI  V +VIN  
Sbjct  465  --------YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFD  516

Query  592  LPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
            LP + + YVHRIGR GR   +GLA S        +   +     +     
Sbjct  517  LPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEV  566


 Score = 100 bits (250),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 63/394 (16%), Positives = 134/394 (34%), Gaps = 84/394 (21%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +FS++ +   I   +E   +  PT +Q  +IP+I    D++  A+TGSGKT AF +P+
Sbjct  178  IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI  237

Query  61   IQIVY-----ETLKDQQE----GKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS-----  106
            +  +Y     E L+  +E    G++ +  I    +   +  +  Y+    F+  S     
Sbjct  238  LSQIYTDGPGEALRAMKENGKYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC  297

Query  107  -----DGLCCQSREVKEW-HGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGT  160
                   +  Q R+++   H   AT G +       V   ++G  ++G         +  
Sbjct  298  VVYGGADIGQQIRDLERGCHLLVATPGRL-------VDMMERG--KIG--LDFCKYLVLD  346

Query  161  DKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPP  220
            +           +  +  F+         DT+                          P 
Sbjct  347  EAD---------RMLDMGFEPQIRRIVEQDTM-------------------------PPK  372

Query  221  HMKNQALFPACVLKNAEL--KFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVT  278
             +++  +F A   K  ++  +    E  F    + G  + +       V+     +  + 
Sbjct  373  GVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEADKRSFLLD  432

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
                       L+   ++             + ++ +       I G  + RD+   L  
Sbjct  433  LLNATGKDSLILVFVETK-------KGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQ  485

Query  339  ----GVDIVVGTPGRLDDLVSTGKLNLSQVRFLV  368
                   I+V T       V+   L++S V+ ++
Sbjct  486  FRSGKSPILVAT------AVAARGLDISNVKHVI  513


>sp|A4RGD1|RRP3_PYRO7 ATP-dependent rRNA helicase RRP3 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=RRP3 PE=3 SV=1
Length=538

 Score = 315 bits (808),  Expect = 1e-97, Method: Composition-based stats.
 Identities = 107/504 (21%), Positives = 184/504 (37%), Gaps = 81/504 (16%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
            +K+ +DLG+   +    +         ++   +                 + +++   G 
Sbjct  109  TKSFRDLGIVEPLCEACEALKFKKPTPIQEQAIPLAL--------QGRDVIGIAETGSGK  160

Query  266  IVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
                       +      P     L++ P+RELA Q     +       +  LR  +++G
Sbjct  161  TAAFALPI---LQSLLEKPQPLFGLVLAPTRELAAQIGQTFEALGA---SISLRCAVVVG  214

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVS-TGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            G+    Q + L     IVV TPGRL D +  T   +L  ++FLV+DEAD LL   +   +
Sbjct  215  GLDMVSQSTALGKKPHIVVATPGRLLDHLEKTKGFSLRSLKFLVMDEADRLLDLDFGPIL  274

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG-EDSVPDTVHH  443
            +++   +P      +  +  + SAT+ S  V+ L    +  P  V +   ++    T+  
Sbjct  275  DKILKFLP------RERRTFLFSATM-SSKVESLQRASLRDPLKVSVSSSQEKTVSTLIQ  327

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
              + +  K                                         K  Y +    E
Sbjct  328  NPLFIPHKH----------------------------------------KDVYLIYLANE  347

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
                  I+F RT  +   +             +   F  + LHG      R   L +FK 
Sbjct  348  FAGKTTIVFTRTVNEAQRVSILL---------RTLSFGAIPLHGQLSQSMRLGALNKFKA  398

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
                 L+ TDVAARG+DI  V  VIN  +P +   Y+HR+GR  RA R G AIS++    
Sbjct  399  RSRDILVATDVAARGLDIPEVDLVINFDMPQDSMTYIHRVGRTARAGRSGRAISIITQYD  458

Query  624  EKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDE  683
             ++W  +  +   G      + D    + + E   + E + H    +  +  D       
Sbjct  459  LELWLRIEKAALNGRKLPLFQPDKEEVMVFKER--VEEAQRHAREEMKALHED-----RG  511

Query  684  FDGKVTYGQKRAAGGGSYKGHVDI  707
              G V  G+KR  G  + + H D+
Sbjct  512  KKGAVLKGRKR--GSATKRRHDDM  533


 Score = 106 bits (265),  Expect = 9e-23, Method: Composition-based stats.
 Identities = 28/67 (42%), Positives = 45/67 (67%), Gaps = 0/67 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +F ++G++  + +A E + +  PT IQ ++IPL L G DV+  AETGSGKT AF++P++
Sbjct  110  KSFRDLGIVEPLCEACEALKFKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPIL  169

Query  62   QIVYETL  68
            Q + E  
Sbjct  170  QSLLEKP  176


>sp|Q9P6N8|RRP3_SCHPO ATP-dependent rRNA helicase rrp3 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp3 
PE=3 SV=1
Length=465

 Score = 313 bits (801),  Expect = 1e-97, Method: Composition-based stats.
 Identities = 109/483 (23%), Positives = 186/483 (39%), Gaps = 75/483 (16%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K  K+LG+  E+    +         ++   +             K   + L++   G  
Sbjct  46   KTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLN--------KRDVIGLAQTGSGKT  97

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
                      + +    P+   A+++ P+RELA Q     +       +  +R ++I+GG
Sbjct  98   AAFAL---PVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIG---GSIGVRSVVIVGG  151

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            +    Q   L     ++V TPGRL D + +T   +L  +++L++DEAD LL   +   I+
Sbjct  152  MDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIID  211

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
            ++   IP         + ++ SAT+ S  V+KL    +H P  V +  + S  DT+    
Sbjct  212  KILKIIPH------ERRTLLFSATMTS-KVEKLQRASLHQPVRVAVSSKFSTVDTLIQRY  264

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
            +    K                                         K  Y V  + E  
Sbjct  265  LFFPFKH----------------------------------------KDTYLVYLVNELA  284

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             +  IIF RT  D   L       G         FS + LHG      R   L +FK G 
Sbjct  285  GNSIIIFARTVNDTQRLAILLRTLG---------FSAIPLHGQLSQSNRLGALNKFKSGA  335

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
               L+ TDVAARG+DI  V  VIN  +P + + Y+HR+GR  RA R G +I+LV     +
Sbjct  336  RSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQYDLE  395

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFD  685
             +  + ++ GK      + ++G   +     + + E +      + ++    K       
Sbjct  396  PFLRIEATIGKKMQEYEIDKEGVFLL----SERVGEAQREAIIQMKEIHDRRKSKGKLHT  451

Query  686  GKV  688
             + 
Sbjct  452  KRK  454


 Score = 102 bits (255),  Expect = 8e-22, Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 9/106 (8%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F E+GV+ E+ +A E++ +  PT IQ E+IP++L   DV+  A+TGSGKT AF++PVI
Sbjct  46   KTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVI  105

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            Q ++                    +   +      ++  A      
Sbjct  106  QELWNNPSPF---------FAVVLAPTRELAYQISEQFEAIGGSIG  142


>sp|Q62167|DDX3X_MOUSE ATP-dependent RNA helicase DDX3X OS=Mus 
musculus OX=10090 GN=Ddx3x PE=1 SV=3
Length=662

 Score = 319 bits (817),  Expect = 1e-97, Method: Composition-based stats.
 Identities = 96/410 (23%), Positives = 157/410 (38%), Gaps = 69/410 (17%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKF---------------LPNAPKALI  291
                 K   +A ++   G          +Q+                        P +L+
Sbjct  212  PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGEALRAMKENGRYGRRKQYPISLV  271

Query  292  VEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLD  351
            + P+RELA Q     ++F       ++R  ++ GG     Q+  LE G  ++V TPGRL 
Sbjct  272  LAPTRELAVQIYEEARKFS---YRSRVRPCVVYGGAEIGQQIRDLERGCHLLVATPGRLV  328

Query  352  DLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLH  411
            D++  GK+ L   ++LVLDEAD +L  G+   I R+  Q             ++ SAT  
Sbjct  329  DMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ--DTMPPKGVRHTMMFSATFP  386

Query  412  SFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHA  471
              +++ L+   +    ++ +    S  + +   VV V     R +               
Sbjct  387  K-EIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEIDKRSF---------------  430

Query  472  KDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGG  531
                                             K    ++F  TK   D+LE +   +G 
Sbjct  431  ------------------------LLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG-  465

Query  532  GPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT  591
                    ++C  +HGDR   +R++ L +F+ G    L+ T VAARG+DI  V +VIN  
Sbjct  466  --------YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFD  517

Query  592  LPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
            LP + + YVHRIGR GR   +GLA S        +   +     +     
Sbjct  518  LPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEV  567


 Score = 101 bits (251),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 61/394 (15%), Positives = 133/394 (34%), Gaps = 84/394 (21%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +FS++ +   I   +E   +  PT +Q  +IP+I    D++  A+TGSGKT AF +P+
Sbjct  179  IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI  238

Query  61   IQIVY--------ETLKDQ-QEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS-----  106
            +  +Y          +K+  + G++ +  I    +   +  +  Y+    F+  S     
Sbjct  239  LSQIYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC  298

Query  107  -----DGLCCQSREVKEW-HGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGT  160
                   +  Q R+++   H   AT G +       V   ++G  ++G         +  
Sbjct  299  VVYGGAEIGQQIRDLERGCHLLVATPGRL-------VDMMERG--KIG--LDFCKYLVLD  347

Query  161  DKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPP  220
            +           +  +  F+         DT+                          P 
Sbjct  348  EAD---------RMLDMGFEPQIRRIVEQDTM-------------------------PPK  373

Query  221  HMKNQALFPACVLKNAEL--KFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVT  278
             +++  +F A   K  ++  +    E  F    + G  + +       V+     +  + 
Sbjct  374  GVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEIDKRSFLLD  433

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
                       L+   ++             + ++ +       I G  + RD+   L  
Sbjct  434  LLNATGKDSLTLVFVETK-------KGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQ  486

Query  339  ----GVDIVVGTPGRLDDLVSTGKLNLSQVRFLV  368
                   I+V T       V+   L++S V+ ++
Sbjct  487  FRSGKSPILVAT------AVAARGLDISNVKHVI  514


>sp|Q5RF43|DDX3Y_PONAB ATP-dependent RNA helicase DDX3Y OS=Pongo 
abelii OX=9601 GN=DDX3Y PE=2 SV=1
Length=658

 Score = 318 bits (816),  Expect = 1e-97, Method: Composition-based stats.
 Identities = 96/406 (24%), Positives = 162/406 (40%), Gaps = 71/406 (17%)

Query  252  KDGFVALSKAPDGYIVKSQHSGNAQVT---------------QTKFLPNAPKALIVEPSR  296
            K   +A ++   G          +Q+                +       P +L++ P+R
Sbjct  215  KRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTR  274

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVST  356
            ELA Q     ++F       ++R  ++ GG     Q+  LE G  ++V TPGRL D++  
Sbjct  275  ELAVQIYEEARKFS---YRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER  331

Query  357  GKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVK  416
            GK+ L   ++LVLDEAD +L  G+   I R+  Q             ++ SAT    +++
Sbjct  332  GKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ--DTMPPKGVRHTMMFSATFPK-EIQ  388

Query  417  KLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTR  476
             L+   +    ++ +    S  + +   VV V                            
Sbjct  389  MLARDFLDEYIFLAVGRVGSTSENITQKVVWVE---------------------------  421

Query  477  PGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ-AIIFCRTKIDCDNLEQYFIQQGGGPDK  535
                          + K  + +  +     D   ++F  TK   D+LE +   +G     
Sbjct  422  -------------DLDKRSFLLDLLGATGRDSLTLVFVETKKGADSLEDFLYHEG-----  463

Query  536  KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDE  595
                ++C  +HGDR   +R++ L +F+ G    L+ T VAARG+DI  V +VIN  LP +
Sbjct  464  ----YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSD  519

Query  596  KQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
             + YVHRIGR GR   +GLA S    +   +   +     +     
Sbjct  520  IEEYVHRIGRTGRVGNLGLATSFFNEKNMNITKDLLDLLVEAKQEV  565


 Score = 99.8 bits (247),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 66/394 (17%), Positives = 134/394 (34%), Gaps = 84/394 (21%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  FS++ +   I   +E   +  PT +Q  +IP+I G  D++  A+TGSGKT AF +P+
Sbjct  177  IENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPI  236

Query  61   IQIVY-----ETLKDQQE----GKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS-----  106
            +  +Y     E LK  +E    G++ +  I    +   +  +  Y+    F+  S     
Sbjct  237  LSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC  296

Query  107  -----DGLCCQSREVKEW-HGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGT  160
                   +  Q R+++   H   AT G +       V   ++G  ++G         +  
Sbjct  297  VVYGGADIGQQIRDLERGCHLLVATPGRL-------VDMMERG--KIG--LDFCKYLVLD  345

Query  161  DKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPP  220
            +           +  +  F+         DT+                          P 
Sbjct  346  EAD---------RMLDMGFEPQIRRIVEQDTM-------------------------PPK  371

Query  221  HMKNQALFPACVLKNAEL--KFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVT  278
             +++  +F A   K  ++  +    E  F    + G  + +       V+     +  + 
Sbjct  372  GVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLD  431

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
                       L+   ++             + ++ +       I G  + RD+   L  
Sbjct  432  LLGATGRDSLTLVFVETK-------KGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQ  484

Query  339  ----GVDIVVGTPGRLDDLVSTGKLNLSQVRFLV  368
                   I+V T       V+   L++S VR ++
Sbjct  485  FRSGKSPILVAT------AVAARGLDISNVRHVI  512


>sp|Q2UNB7|RRP3_ASPOR ATP-dependent rRNA helicase rrp3 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=rrp3 
PE=3 SV=1
Length=472

 Score = 313 bits (801),  Expect = 1e-97, Method: Composition-based stats.
 Identities = 107/503 (21%), Positives = 183/503 (36%), Gaps = 87/503 (17%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K+ K+LGL  ++     +        ++   +                 + L++   G  
Sbjct  52   KSFKELGLIEQLCEACDSMGYKAPTAIQAEAIPLAL--------QGRDLIGLAETGSGKT  103

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
                      +      P++   L++ P+RELA Q     +     I    +R  +++GG
Sbjct  104  AAFALPI---LQALMDKPSSFFGLVLAPTRELAYQISQAFEGLGSTIS---VRSTVLVGG  157

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            +    Q   L     I+V TPGRL D + +T   +L  +++LV+DEAD LL   +   ++
Sbjct  158  MDMVSQSIALGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPILD  217

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED-SVPDTVHHV  444
            ++   +P      +  +  + SAT+ S  V+ L    +  P  V +         T+   
Sbjct  218  KILKVLP------RERRTYLFSATM-SSKVESLQRASLQNPLRVAVSSSKFQTVSTLQQS  270

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
             + +  K                                         K  Y V  + E 
Sbjct  271  YIFIPHKH----------------------------------------KDLYLVYLLNEF  290

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
                 IIFCRT  +   L  +    G         F  + LHG      R   L +F+  
Sbjct  291  VGQSCIIFCRTVHETQRLSFFLRLLG---------FGAIPLHGQLSQSARLGALGKFRSR  341

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
                L+ TDVAARG+DI  V  V+N  LP + + ++HRIGR  RA + G+AIS       
Sbjct  342  SRDILVATDVAARGLDIPSVDVVLNFDLPGDSKTFIHRIGRTARAGKSGVAISFATQYDV  401

Query  625  KVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEF  684
            + W  +  + GK       ++D                   L   +S+ +    + +  +
Sbjct  402  EAWLRIEGALGKKLPEYPAEKDEVMV---------------LAERVSEAQRSAILEMKNY  446

Query  685  DGKVTYGQKRAAGGGSYKGHVDI  707
            D K     K+ A G   +  +D 
Sbjct  447  DEKKGSRGKKFAKGKRSREDMDQ  469


 Score = 105 bits (262),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 30/94 (32%), Positives = 51/94 (54%), Gaps = 9/94 (10%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +F E+G++ ++ +A + M +  PT IQAE+IPL L G D++  AETGSGKT AF++P++
Sbjct  52   KSFKELGLIEQLCEACDSMGYKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALPIL  111

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNP  95
            Q + +         K  +      +   +     
Sbjct  112  QALMD---------KPSSFFGLVLAPTRELAYQI  136


>sp|O15523|DDX3Y_HUMAN ATP-dependent RNA helicase DDX3Y OS=Homo 
sapiens OX=9606 GN=DDX3Y PE=1 SV=2
Length=660

 Score = 318 bits (816),  Expect = 2e-97, Method: Composition-based stats.
 Identities = 96/406 (24%), Positives = 162/406 (40%), Gaps = 71/406 (17%)

Query  252  KDGFVALSKAPDGYIVKSQHSGNAQVT---------------QTKFLPNAPKALIVEPSR  296
            K   +A ++   G          +Q+                +       P +L++ P+R
Sbjct  215  KRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTR  274

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVST  356
            ELA Q     ++F       ++R  ++ GG     Q+  LE G  ++V TPGRL D++  
Sbjct  275  ELAVQIYEEARKFS---YRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER  331

Query  357  GKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVK  416
            GK+ L   ++LVLDEAD +L  G+   I R+  Q             ++ SAT    +++
Sbjct  332  GKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ--DTMPPKGVRHTMMFSATFPK-EIQ  388

Query  417  KLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTR  476
             L+   +    ++ +    S  + +   VV V                            
Sbjct  389  MLARDFLDEYIFLAVGRVGSTSENITQKVVWVE---------------------------  421

Query  477  PGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ-AIIFCRTKIDCDNLEQYFIQQGGGPDK  535
                          + K  + +  +     D   ++F  TK   D+LE +   +G     
Sbjct  422  -------------DLDKRSFLLDILGATGSDSLTLVFVETKKGADSLEDFLYHEG-----  463

Query  536  KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDE  595
                ++C  +HGDR   +R++ L +F+ G    L+ T VAARG+DI  V +VIN  LP +
Sbjct  464  ----YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSD  519

Query  596  KQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
             + YVHRIGR GR   +GLA S    +   +   +     +     
Sbjct  520  IEEYVHRIGRTGRVGNLGLATSFFNEKNMNITKDLLDLLVEAKQEV  565


 Score = 98.7 bits (244),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 66/394 (17%), Positives = 135/394 (34%), Gaps = 84/394 (21%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  FS++ +   I   +E   +  PT +Q  +IP+I G  D++  A+TGSGKT AF +P+
Sbjct  177  IENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPI  236

Query  61   IQIVY-----ETLKDQQE----GKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS-----  106
            +  +Y     E LK  +E    G++ +  I    +   +  +  Y+    F+  S     
Sbjct  237  LSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC  296

Query  107  -----DGLCCQSREVKEW-HGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGT  160
                   +  Q R+++   H   AT G +       V   ++G  ++G         +  
Sbjct  297  VVYGGADIGQQIRDLERGCHLLVATPGRL-------VDMMERG--KIG--LDFCKYLVLD  345

Query  161  DKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPP  220
            +           +  +  F+         DT+                          P 
Sbjct  346  EAD---------RMLDMGFEPQIRRIVEQDTM-------------------------PPK  371

Query  221  HMKNQALFPACVLKNAEL--KFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVT  278
             +++  +F A   K  ++  +    E  F    + G  + +       V+     +  + 
Sbjct  372  GVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLD  431

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
                  +    L+   ++             + ++ +       I G  + RD+   L  
Sbjct  432  ILGATGSDSLTLVFVETK-------KGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQ  484

Query  339  ----GVDIVVGTPGRLDDLVSTGKLNLSQVRFLV  368
                   I+V T       V+   L++S VR ++
Sbjct  485  FRSGKSPILVAT------AVAARGLDISNVRHVI  512


>sp|Q4P3U9|RRP3_USTMA ATP-dependent rRNA helicase RRP3 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=RRP3 PE=3 
SV=2
Length=561

 Score = 315 bits (807),  Expect = 2e-97, Method: Composition-based stats.
 Identities = 107/505 (21%), Positives = 180/505 (36%), Gaps = 82/505 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            DLG+  +I     N        ++   +                 + L++   G      
Sbjct  118  DLGVIPQIVEACTNMGFKHPTPIQVKAIPEAL--------QARDVIGLAQTGSGKTAAFT  169

Query  271  HSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
                  +      P    A ++ P+RELA Q    ++     I    +R   I+GG+   
Sbjct  170  IPI---LQALWDNPKPFFACVLAPTRELAYQISQQVEALGSTIG---VRSATIVGGMDMM  223

Query  331  DQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHN  389
             Q   L     ++V TPGRL D + +T   +L  +++LV+DEAD LL   +   I+++  
Sbjct  224  SQSIALSKRPHVIVATPGRLQDHLENTKGFSLRGLQYLVMDEADRLLDMDFGPIIDKLLQ  283

Query  390  QIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN  449
             IP      +  + ++ SAT+ +  V KL    +  P  V++  + +   T+    + + 
Sbjct  284  SIP------RERRTMLFSATMTT-KVAKLQRASLKNPVRVEVDTKYTTVSTLKQHYMFMP  336

Query  450  PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA  509
                                                       K  Y V    E      
Sbjct  337  FAH----------------------------------------KDTYLVHLANEQAGHSI  356

Query  510  IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL  569
            I+F RT  D   L       G         F  + LHG      R   L +FK G    L
Sbjct  357  IVFTRTVHDSQRLSILLRLLG---------FPAIPLHGQLSQQARLGALNKFKTGGRSIL  407

Query  570  ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            + TDVA+RG+DI  V  V+N  +P   ++Y+HR+GR  RA R G +++LV     ++   
Sbjct  408  VATDVASRGLDIPAVDLVVNYDIPTNSKDYIHRVGRTARAGRSGRSVTLVTQYDVELLQR  467

Query  630  VCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVT  689
            + +  G      ++ E  G       M L   + E     + ++                
Sbjct  468  IEAVIG-----LKMTEFPGGNDKEAVMLLSERVAEAHRAAVREL------KDKGVGSAGG  516

Query  690  YGQKRAAGGGSYKGHVDILAPTVQE  714
             G+++    G Y   +D     VQ 
Sbjct  517  SGKRKRKMDGKYGDDMDRDDDQVQA  541


 Score = 108 bits (269),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 62/139 (45%), Gaps = 20/139 (14%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS++GV+P+I +A   M +  PT IQ ++IP  L   DV+  A+TGSGKT AF+IP++Q 
Sbjct  116  FSDLGVIPQIVEACTNMGFKHPTPIQVKAIPEALQARDVIGLAQTGSGKTAAFTIPILQA  175

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS--------DGLCCQSRE  115
            +++  K                +   +       +  A              G+   S+ 
Sbjct  176  LWDNPKPF---------FACVLAPTRELAYQISQQVEALGSTIGVRSATIVGGMDMMSQS  226

Query  116  V---KEWHGCRATKGLMKG  131
            +   K  H   AT G ++ 
Sbjct  227  IALSKRPHVIVATPGRLQD  245


>sp|A2RB17|RRP3_ASPNC ATP-dependent rRNA helicase rrp3 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=rrp3 PE=3 SV=1
Length=467

 Score = 312 bits (799),  Expect = 2e-97, Method: Composition-based stats.
 Identities = 104/458 (23%), Positives = 170/458 (37%), Gaps = 72/458 (16%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
            SK  K+LG+  ++    +         ++   +                 + L++   G 
Sbjct  47   SKTFKELGIIEQLCEACETMGYKAPTPIQRESIPLAL--------KGRDLIGLAETGSGK  98

Query  266  IVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
                       +      P     L++ P+RELA Q   + +       +  +R  +I+G
Sbjct  99   TAAFALPI---LQALMEKPQPFFGLVLAPTRELAYQISKSFESLGA---SMGVRSCVIVG  152

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            G+    Q   L     I+V TPGRL D + +T   +L  +++LV+DEAD LL   +   +
Sbjct  153  GMDMVSQSISLGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPLL  212

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK-GEDSVPDTVHH  443
            +++   +P      +  +  + SAT+ S  V+ L    +  P  V +   +     T+  
Sbjct  213  DKILKVLP------RERRTFLFSATM-SSKVESLQRASLSNPLRVSVSTSKYQTVSTLLQ  265

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
              + +  K                                         K  Y V  + E
Sbjct  266  SYLFIPQKH----------------------------------------KDLYLVYLLNE  285

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
                  IIF RT  +   L       G         F  + LHG      R   L +F+ 
Sbjct  286  FAGQSTIIFTRTVNETQRLAFLLRALG---------FGAIPLHGQLSQSARLGALGKFRA  336

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
                 L+ TDVAARG+DI  V  V+N  LP +  +YVHR+GR  RA + GLAIS VA   
Sbjct  337  RSRNILVATDVAARGLDIPSVDVVLNFDLPGDSPSYVHRVGRTARAGKSGLAISFVAQYD  396

Query  624  EKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE  661
             +VW  +  + GK        +D    +  N  +   +
Sbjct  397  VEVWLRIEGALGKKLKEYDCPKDEVMVLGENVAEAQRQ  434


 Score = 107 bits (267),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 9/110 (8%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F E+G++ ++ +A E M +  PT IQ ESIPL L G D++  AETGSGKT AF++P++
Sbjct  48   KTFKELGIIEQLCEACETMGYKAPTPIQRESIPLALKGRDLIGLAETGSGKTAAFALPIL  107

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
            Q + E         K +       +   +          +         C
Sbjct  108  QALME---------KPQPFFGLVLAPTRELAYQISKSFESLGASMGVRSC  148


>sp|Q5N7W4|RH30_ORYSJ DEAD-box ATP-dependent RNA helicase 30 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os01g0911100 PE=2 
SV=2
Length=666

 Score = 318 bits (815),  Expect = 3e-97, Method: Composition-based stats.
 Identities = 100/419 (24%), Positives = 160/419 (38%), Gaps = 69/419 (16%)

Query  221  HMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQT  280
             +          +++                    + +++   G  +     G   V   
Sbjct  265  AIAKSGFVEPTPIQSQGWPMAL--------KGRDMIGIAQTGSGKTLSYLLPGLVHVGAQ  316

Query  281  KFLP--NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
              L   + P  LI+ P+RELA Q      +F  Y    + R   I GG     Q+  L  
Sbjct  317  PRLEQGDGPIVLILAPTRELAVQIQQESGKFGSY---SRTRSTCIYGGAPKGPQIRDLRR  373

Query  339  GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
            GV+IV+ TPGRL D++  G  NL +V +LVLDEAD +L  G+   I ++  QI       
Sbjct  374  GVEIVIATPGRLIDMLEGGHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQI------R  427

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED-SVPDTVHHVVVPVNPKTDRLWE  457
               Q +  SAT    +V+ L+ + +  P  V +   D     ++  ++  ++        
Sbjct  428  PDRQTLYWSATWP-REVESLARQFLQNPYKVIIGSPDLKANHSIQQIIEVISEH------  480

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
                                     E +    K+L               + +IF +TK 
Sbjct  481  -------------------------EKYPRLSKLLSDL--------MDGSRILIFFQTKK  507

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
            DCD + +     G         +  + +HGD+   ER   L  FK G    +  TDVAAR
Sbjct  508  DCDKVTRQLRMDG---------WPALSIHGDKAQAERDYVLAEFKSGKSPIMAATDVAAR  558

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGK  636
            G+D+  +  VIN   P   ++Y+HRIGR GRA   G A +       K   ++     +
Sbjct  559  GLDVKDIKCVINFDFPTTLEDYIHRIGRTGRAGASGTAFTFFTLSNAKFSRNLVKILRE  617


 Score = 99.0 bits (245),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 9/140 (6%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F E        QA+ +  ++ PT IQ++  P+ L G D++  A+TGSGKT ++ +P +  
Sbjct  253  FQEANFPDYCMQAIAKSGFVEPTPIQSQGWPMALKGRDMIGIAQTGSGKTLSYLLPGLVH  312

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            V    + +Q    G   I    +   +  +        F     G   ++R    + G  
Sbjct  313  VGAQPRLEQ----GDGPIVLILAPTRELAVQIQQESGKF-----GSYSRTRSTCIYGGAP  363

Query  124  ATKGLMKGKHYYEVSCHDQG  143
                +   +   E+     G
Sbjct  364  KGPQIRDLRRGVEIVIATPG  383


>sp|Q6GVM6|DDX3Y_PANTR ATP-dependent RNA helicase DDX3Y OS=Pan 
troglodytes OX=9598 GN=DDX3Y PE=2 SV=1
Length=660

 Score = 318 bits (814),  Expect = 3e-97, Method: Composition-based stats.
 Identities = 96/406 (24%), Positives = 162/406 (40%), Gaps = 71/406 (17%)

Query  252  KDGFVALSKAPDGYIVKSQHSGNAQVT---------------QTKFLPNAPKALIVEPSR  296
            K   +A ++   G          +Q+                +       P +L++ P+R
Sbjct  215  KRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTR  274

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVST  356
            ELA Q     ++F       ++R  ++ GG     Q+  LE G  ++V TPGRL D++  
Sbjct  275  ELAVQIYEEARKFS---YRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER  331

Query  357  GKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVK  416
            GK+ L   ++LVLDEAD +L  G+   I R+  Q             ++ SAT    +++
Sbjct  332  GKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ--DTMPPKGVRHTMMFSATFPK-EIQ  388

Query  417  KLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTR  476
             L+   +    ++ +    S  + +   VV V                            
Sbjct  389  MLARDFLDEYIFLAVGRVGSTSENITQKVVWVE---------------------------  421

Query  477  PGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ-AIIFCRTKIDCDNLEQYFIQQGGGPDK  535
                          + K  + +  +     D   ++F  TK   D+LE +   +G     
Sbjct  422  -------------DLDKRSFLLDILGAAGTDSLTLVFVETKKGADSLEDFLYHEG-----  463

Query  536  KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDE  595
                ++C  +HGDR   +R++ L +F+ G    L+ T VAARG+DI  V +VIN  LP +
Sbjct  464  ----YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSD  519

Query  596  KQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
             + YVHRIGR GR   +GLA S    +   +   +     +     
Sbjct  520  IEEYVHRIGRTGRVGNLGLATSFFNEKNINITKDLLDLLVEAKQEV  565


 Score = 96.4 bits (238),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 56/115 (49%), Gaps = 9/115 (8%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F ++ +   I   ++   +  PT +Q  +IP+I G  D++  A+TGSGKT AF +P+
Sbjct  177  IENFGDIDMGEIIMGNIQLTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPI  236

Query  61   IQIVY-----ETLKDQQE----GKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            +  +Y     E LK  +E    G++ +  I    +   +  +  Y+    F+  S
Sbjct  237  LSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS  291


>sp|Q62095|DDX3Y_MOUSE ATP-dependent RNA helicase DDX3Y OS=Mus 
musculus OX=10090 GN=Ddx3y PE=1 SV=2
Length=658

 Score = 317 bits (813),  Expect = 4e-97, Method: Composition-based stats.
 Identities = 96/410 (23%), Positives = 159/410 (39%), Gaps = 69/410 (17%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVT---------------QTKFLPNAPKALI  291
                 K   +A ++   G          +Q+                +       P +L+
Sbjct  211  PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAMKENGRYGRRKQYPISLV  270

Query  292  VEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLD  351
            + P+RELA Q     ++F       ++R  ++ GG     Q+  LE G  ++V TPGRL 
Sbjct  271  LAPTRELAVQIYEEARKFS---YRSRVRPCVVYGGADTVQQIRDLERGCHLLVATPGRLV  327

Query  352  DLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLH  411
            D++  GK+ L   ++LVLDEAD +L  G+   I R+  Q             ++ SAT  
Sbjct  328  DMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ--DTMPPKGVRHTMMFSATFP  385

Query  412  SFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHA  471
              +++ L+   +    ++ +    S  + +   VV V     R +               
Sbjct  386  K-EIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELDKRSF---------------  429

Query  472  KDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGG  531
                                             K    ++F  TK   D+LE +  Q+  
Sbjct  430  ------------------------LLDLLNATGKDSLTLVFVETKKGADSLENFLFQE--  463

Query  532  GPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT  591
                   +++C  +HGDR   +R++ L +F+ G    L+ T VAARG+DI  V +VIN  
Sbjct  464  -------RYACTSIHGDRSQKDREEALHQFRSGRKPILVATAVAARGLDISNVKHVINFD  516

Query  592  LPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
            LP + + YVHRIGR GR   +GLA S        +   +     +     
Sbjct  517  LPSDIEEYVHRIGRTGRVGNLGLATSFFNERNLNITKDLLDLLVEAKQEV  566


 Score = 99.0 bits (245),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 31/115 (27%), Positives = 56/115 (49%), Gaps = 9/115 (8%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  FS++ +   I   +E   +  PT +Q  +IP+I    D++  A+TGSGKT AF +P+
Sbjct  178  IENFSDIEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI  237

Query  61   IQIVY-----ETLKDQQE----GKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            +  +Y     E LK  +E    G++ +  I    +   +  +  Y+    F+  S
Sbjct  238  LSQIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS  292


>sp|Q9M2F9|RH52_ARATH DEAD-box ATP-dependent RNA helicase 52 OS=Arabidopsis 
thaliana OX=3702 GN=RH52 PE=1 SV=1
Length=646

 Score = 317 bits (812),  Expect = 4e-97, Method: Composition-based stats.
 Identities = 115/465 (25%), Positives = 183/465 (39%), Gaps = 68/465 (15%)

Query  196  LDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFP---PK  252
            ++  +  V   +  +D+ +             F    L  A L  N    ++  P    +
Sbjct  116  VNEQENTVINFEAYEDIPIETSGDNVPPPVNTFAEIDLGEA-LNLNIQRCKYVKPTPVQR  174

Query  253  DGFVALSKAPDGYIVKSQHSGNA-----------QVTQTKFLPNA-----PKALIVEPSR  296
            +    L+   D        SG                Q    P       P A+I+ P+R
Sbjct  175  NAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTR  234

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVST  356
            ELA Q  +  ++F        ++ ++  GG     Q+  LE GVDI+V TPGRL+DL+  
Sbjct  235  ELACQIHDEARKFS---YQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLER  291

Query  357  GKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVK  416
            G+++L  VRFL LDEAD +L  G+   I ++  Q+          Q ++ SAT    +++
Sbjct  292  GRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMD--MPPPGVRQTMLFSATFP-REIQ  348

Query  417  KLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTR  476
            +L+   +    ++ +                V   TD + +R+   H      H  D   
Sbjct  349  RLASDFLSNYIFLAVG--------------RVGSSTDLIVQRVEFVHDSDKRSHLMDLLH  394

Query  477  PGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKK  536
                +     +A+                    ++F  TK   D+LE +    G      
Sbjct  395  AQRENGNQGKQAL-------------------TLVFVETKKGADSLENWLCING------  429

Query  537  GHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEK  596
               F    +HGDR   ER+  L  FK G    L+ TDVAARG+DI  V +V+N  LP++ 
Sbjct  430  ---FPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDI  486

Query  597  QNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
             +YVHRIGR GRA   GLA +        +   +     +     
Sbjct  487  DDYVHRIGRTGRAGNSGLATAFFNDNNTTMAKPLAELMQEANQEV  531


 Score = 103 bits (256),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 1/104 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F+E+ +   +   ++   ++ PT +Q  +IP++  G D++  A+TGSGKT AF  P+
Sbjct  145  VNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPI  204

Query  61   IQIVYETLKDQQE-GKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
            I  + +    ++  G +G   +    S   +     +D    F+
Sbjct  205  ISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFS  248


>sp|Q7RY59|RRP3_NEUCR ATP-dependent rRNA helicase rrp-3 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 
/ DSM 1257 / FGSC 987) OX=367110 GN=rrp-3 PE=3 SV=1
Length=515

 Score = 313 bits (801),  Expect = 4e-97, Method: Composition-based stats.
 Identities = 112/503 (22%), Positives = 182/503 (36%), Gaps = 82/503 (16%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K  KDLG+   +    +         ++   +                 + +++   G  
Sbjct  90   KTFKDLGIVDALCEACERLGYKNPTPIQEQSIPLAL--------QNRDIIGIAETGSGKT  141

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
                      +      P    AL++ P+RELA Q     +     I    LR  LI+GG
Sbjct  142  AAFALPI---LQALLDKPAPLFALVLAPTRELAAQIAQAFEALGSLIS---LRCALILGG  195

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVS-TGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            +    Q   L     ++V TPGRL D +  T   +L  +++LV+DEAD LL   +   + 
Sbjct  196  MDMVTQAIALGKKPHVIVATPGRLLDHLEKTKGFSLRSMQYLVMDEADRLLDMDFGPILE  255

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED-SVPDTVHHV  444
            ++   +P      +  +  + SAT+ S  V+ L    +  P  V +     +   T+   
Sbjct  256  KILKFLP------RERRTFLFSATM-SSKVESLQRASLRDPLKVSVSSNKYATVSTLKSN  308

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
             V +                                          + K  Y V    E 
Sbjct  309  YVFIP----------------------------------------HMHKDTYLVYLCNEF  328

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
                 IIF RT ++   +       G G          + LHG      R   L +F+ G
Sbjct  329  AGQTIIIFTRTVLETQRIAILLRTLGMG---------AIPLHGGLSQSARLGALNKFRAG  379

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
                L+ TDVAARG+DI  V  VIN  LP + + YVHR+GR  RA + G AIS+V     
Sbjct  380  SREILVATDVAARGLDIPNVDCVINHDLPQDSKTYVHRVGRTARAGKSGHAISIVTQYDL  439

Query  625  KVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEF  684
            ++W  + ++ G       L++D            + E + H    +  +     +     
Sbjct  440  EIWLRIEAALGHKLDEYPLEKDEVMVF----KPRVEEAQRHARNEMKSL-----MENQGK  490

Query  685  DGKVTYGQKRAAGGGSYKGHVDI  707
             G +   +KR  G G  + H+D 
Sbjct  491  HGGLLK-RKRGNGQGGGRDHMDA  512


 Score = 103 bits (257),  Expect = 7e-22, Method: Composition-based stats.
 Identities = 26/67 (39%), Positives = 43/67 (64%), Gaps = 0/67 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F ++G++  + +A E + +  PT IQ +SIPL L   D++  AETGSGKT AF++P++
Sbjct  90   KTFKDLGIVDALCEACERLGYKNPTPIQEQSIPLALQNRDIIGIAETGSGKTAAFALPIL  149

Query  62   QIVYETL  68
            Q + +  
Sbjct  150  QALLDKP  156


>sp|Q6BQ61|RRP3_DEBHA ATP-dependent rRNA helicase RRP3 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 
/ JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=RRP3 PE=3 SV=2
Length=477

 Score = 312 bits (798),  Expect = 4e-97, Method: Composition-based stats.
 Identities = 105/479 (22%), Positives = 173/479 (36%), Gaps = 73/479 (15%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
             K+  +L L  E+   ++         +++  +                 + L++   G 
Sbjct  64   FKSFNELKLIPELLEAIQQMKFTKPTPIQSEAIPHAL--------EGKDIIGLAQTGSGK  115

Query  266  IVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
                       +        A   L++ P+RELA Q             +  LR + I+G
Sbjct  116  TAAFAIPI---LQALWEAQAAYYGLVLAPTRELAYQIKETFDALG---SSMGLRSVCIVG  169

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVS-TGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            G+   DQ   L     I+V TPGR+ D +  T   +L  +++LV+DEAD LL   +   +
Sbjct  170  GMDMMDQARDLMRKPHILVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPAL  229

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
            +++   IP       +    + SAT+ +  + KL    +H P  V +  +    D +   
Sbjct  230  DKILKIIPT------QRTTYLFSATMTN-KIAKLQRASLHNPVRVAVSNKYQTADNLVQS  282

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
            ++ V+                                           K  Y +  + E 
Sbjct  283  MMLVS----------------------------------------DGYKNTYLIHLLNEF  302

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
                 IIF RT             Q      +   FS V LHG     +R  +L +FK G
Sbjct  303  LGKSIIIFTRTCAH---------SQRTALLARILGFSAVPLHGQLTQAQRLGSLNKFKAG  353

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
                LI TDVAARG+DI  V  VIN  +P + + Y+HR+GR  RA + G +ISL+     
Sbjct  354  KANILIATDVAARGLDIPSVDIVINYDIPTDSKAYIHRVGRTARAGKSGKSISLITQYDL  413

Query  625  KVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDE  683
            +++  + S  GK                +  +   S   E +  T    E        +
Sbjct  414  EMYLRIESVLGKKLPKDPSPSKAVLDTLHVHVDRAS--AEAIRQTKDFHEKRNPKKNRD  470


 Score = 108 bits (270),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 54/106 (51%), Gaps = 9/106 (8%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +F+E+ ++PE+ +A+++M +  PT IQ+E+IP  L G D++  A+TGSGKT AF+IP++
Sbjct  65   KSFNELKLIPELLEAIQQMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPIL  124

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            Q ++E                   +   +      +   A      
Sbjct  125  QALWEAQ---------AAYYGLVLAPTRELAYQIKETFDALGSSMG  161


>sp|Q6FNK8|RRP3_CANGA ATP-dependent rRNA helicase RRP3 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=RRP3 PE=3 SV=1
Length=493

 Score = 312 bits (799),  Expect = 5e-97, Method: Composition-based stats.
 Identities = 109/485 (22%), Positives = 183/485 (38%), Gaps = 79/485 (16%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
               L L  E+    +N        ++   +       +         + L++   G    
Sbjct  75   FAQLNLVPELIQACQNLNFTKPTPIQARAIPPALAGSD--------VIGLAQTGSGKTAA  126

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
                    + +         A ++ P+RELA+Q           +    +R   I+GG+ 
Sbjct  127  FAIPI---LNKLWEDQQPYYACVLAPTRELAQQIKETFDSLGSLMG---VRTTCIVGGMN  180

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFINRM  387
              DQ   L     I++ TPGRL D + +T   +L  ++FLV+DEAD LL   +   ++R+
Sbjct  181  MMDQARDLMRKPHIIIATPGRLMDHLENTKGFSLKNLKFLVMDEADRLLDMEFGPVLDRI  240

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
               IP      K     + SAT+ S  + KL    +  P    +  +    DT+   ++ 
Sbjct  241  LKIIP-----TKGRTTYLFSATMTS-KIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMV  294

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
            V                                           LK  + +  + E    
Sbjct  295  VP----------------------------------------GGLKNTFLIYLLNEFIGK  314

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
              IIF RTK + + L                +FS   LHGD   ++R   L+ FK G   
Sbjct  315  TVIIFTRTKANAERLSGL---------CNLLEFSATALHGDLNQNQRTGALDLFKAGKRS  365

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             L+ TDVAARG+DI  V  VIN  +P + ++Y+HR+GR  RA R G +ISLV+    ++ 
Sbjct  366  ILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELI  425

Query  628  YHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGK  687
              +    GK      + ++   T+  +  +   E+          +E + +    +  GK
Sbjct  426  LRIEEVLGKKLPKESVDKNIILTLRDSVDKANGEVV---------MEMNRRNKEKQARGK  476

Query  688  VTYGQ  692
               G+
Sbjct  477  GRRGR  481


 Score = 107 bits (267),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 31/71 (44%), Positives = 50/71 (70%), Gaps = 3/71 (4%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F+++ ++PE+ QA + +++  PT IQA +IP  L G DV+  A+TGSGKT AF+IP++ 
Sbjct  74   SFAQLNLVPELIQACQNLNFTKPTPIQARAIPPALAGSDVIGLAQTGSGKTAAFAIPILN  133

Query  63   IVYETLKDQQE  73
             ++E   DQQ 
Sbjct  134  KLWE---DQQP  141


>sp|A7TS37|RRP3_VANPO ATP-dependent rRNA helicase RRP3 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 
21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=RRP3 PE=3 SV=1
Length=506

 Score = 312 bits (800),  Expect = 6e-97, Method: Composition-based stats.
 Identities = 109/458 (24%), Positives = 178/458 (39%), Gaps = 70/458 (15%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            DL L  E+    KN        ++   +                 + L++   G      
Sbjct  90   DLDLVPELIEACKNLNFAKPTPIQARSIPPAL--------QGHDIIGLAQTGSGKTAAFA  141

Query  271  HSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
                  + +         A I+ P+RELA+Q           +    +R   I+GG+   
Sbjct  142  IPI---LNRLWHDQQPYYACILAPTRELAQQIKETFDSLGSLMG---VRSACIVGGMNMM  195

Query  331  DQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHN  389
            DQ   L     I++ TPGRL D + +T   +L +++FLV+DEAD LL   +   ++R+  
Sbjct  196  DQARDLMRKPHIIIATPGRLMDHLENTRGFSLRKLKFLVMDEADRLLDMEFGPVLDRILK  255

Query  390  QIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN  449
             IP      +     + SAT+ S  + KL    +  P    +  +    DT+   ++ V 
Sbjct  256  IIP-----TQGRTTYLFSATMTS-KIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLIVVP  309

Query  450  PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA  509
                                                      LK  Y +  + E      
Sbjct  310  ----------------------------------------GGLKNTYLIYLMNEFIGKTI  329

Query  510  IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL  569
            I+F RTK + + +                +FS   LHGD   ++R  +L+ FK G    L
Sbjct  330  IVFTRTKANAERITTL---------ANLLEFSATALHGDLNQNQRTGSLDLFKAGRRSIL  380

Query  570  ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            + TDVAARG+DI  V  VIN  +P + ++Y+HR+GR  RA R G +ISLV+    ++   
Sbjct  381  VATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR  440

Query  630  VCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLN  667
            +    GK      + +D   T+  +  +   E+   LN
Sbjct  441  IEDVLGKKLPKENVNKDAILTLRDSVDKANGEVVMELN  478


 Score = 108 bits (270),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 49/71 (69%), Gaps = 3/71 (4%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +FS++ ++PE+ +A + +++  PT IQA SIP  L G D++  A+TGSGKT AF+IP++ 
Sbjct  87   SFSDLDLVPELIEACKNLNFAKPTPIQARSIPPALQGHDIIGLAQTGSGKTAAFAIPILN  146

Query  63   IVYETLKDQQE  73
             ++    DQQ 
Sbjct  147  RLWH---DQQP  154


>sp|A6R3L3|DED1_AJECN ATP-dependent RNA helicase DED1 OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=DED1 PE=3 
SV=1
Length=694

 Score = 318 bits (814),  Expect = 6e-97, Method: Composition-based stats.
 Identities = 96/360 (27%), Positives = 158/360 (44%), Gaps = 58/360 (16%)

Query  265  YIVKSQHSGNAQVTQTKFLPNA----PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRE  320
             + +S H+   +    + L       P ALI+ P+REL  Q  +  +   K+     L  
Sbjct  261  ILSQSLHTRGPEAEAARGLGRQQKAYPTALILGPTRELVSQIYDEAR---KFCYRTALHP  317

Query  321  LLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGY  380
             ++ GG    +QL  L+ G +++V TPGRL D++  G+++L+ +++LVLDEAD +L  G+
Sbjct  318  RVVYGGAEMGNQLRQLDQGCNVLVATPGRLVDMMERGRISLAHIQYLVLDEADRMLDMGF  377

Query  381  SDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDT  440
               I R+         D    Q ++ SAT    D++KL+E+ +    ++ +    S  + 
Sbjct  378  EPQIRRIVQG--SDMPDKHMRQTLMFSATFPP-DIQKLAEEFLKDHIFLSVGRVGSTSEN  434

Query  441  VHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRA  500
            +   +V      D                                       K    +  
Sbjct  435  ITQRIVECESDKD---------------------------------------KDSALLDI  455

Query  501  IKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLER  560
            +        ++F  TK   D L  + +          H+     +HGDR   ER++ LE 
Sbjct  456  LCSDSTGLTLVFVETKRQADMLSDFLLD---------HRLPATAIHGDRTQRERERALEL  506

Query  561  FKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            F+ G    L+ T VAARG+DI  V +VIN  LP+E  +YVHRIGR GRA   G++ +  +
Sbjct  507  FRTGRCPILVATAVAARGLDIPNVTHVINYDLPNEIDDYVHRIGRTGRAGNTGISTAFFS  566


 Score = 103 bits (256),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 46/108 (43%), Gaps = 6/108 (6%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + AF+   +   +   +    + +PT +Q  SIP+++GG D++  A+TGSGKTG F  P+
Sbjct  202  ITAFTNPPLHEHLLSNIVLARYTVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPI  261

Query  61   IQIVYETLKDQQEGKKGKT------TIKTGASVLNKWQMNPYDRGSAF  102
            +     T   + E  +G                  +     YD    F
Sbjct  262  LSQSLHTRGPEAEAARGLGRQQKAYPTALILGPTRELVSQIYDEARKF  309


>sp|Q6Z4K6|RH52B_ORYSJ DEAD-box ATP-dependent RNA helicase 52B 
OS=Oryza sativa subsp. japonica OX=39947 GN=PL10B PE=2 SV=1
Length=638

 Score = 316 bits (810),  Expect = 7e-97, Method: Composition-based stats.
 Identities = 100/402 (25%), Positives = 163/402 (41%), Gaps = 55/402 (14%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNA-------PKALIVEPSRELA  299
                     +A ++   G          + + +++  P +       P ALI+ P+REL+
Sbjct  201  PISIAGRDLMACAQTGSGKTAAFCFPIISGIMRSRPPPRSRGSRTAYPLALILSPTRELS  260

Query  300  EQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKL  359
             Q     ++F        ++ ++  GG     QL  LE GV+I+V TPGRL DL+   ++
Sbjct  261  VQIHEEARKFA---YQTGVKVVVAYGGAPITQQLRELERGVEILVATPGRLMDLLERARV  317

Query  360  NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLS  419
            +L  +++L LDEAD +L  G+   I ++  Q+          Q ++ SAT    ++++++
Sbjct  318  SLQMIKYLALDEADRMLDMGFEPQIRKIVEQMD--MPPRGERQTMLFSATFPK-EIQRMA  374

Query  420  EKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGA  479
               +    ++ +    S  D +   V  V     R +        R +  H K       
Sbjct  375  SDFLADYIFLAVGRVGSSTDLIVQRVEFVLDADKRSYLMDLLHAQRANGTHGKQAL----  430

Query  480  NSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQ  539
                                          ++F  TK   D LE +    G         
Sbjct  431  -----------------------------TLVFVETKRGADALENWLYNNG---------  452

Query  540  FSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNY  599
            F    +HGDR   ER+  L  FK G    L+ TDVAARG+DI  V +VIN  LP++  +Y
Sbjct  453  FPATSIHGDRTQQEREYALRSFKSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDY  512

Query  600  VHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
            VHRIGR GRA + GLA +        +   +     +     
Sbjct  513  VHRIGRTGRAGKSGLATAFFNESNTPLARPLSELMQEANQEV  554


 Score = 105 bits (262),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 5/104 (5%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F+E+ +   + + +    ++ PT +Q  +IP+ + G D++  A+TGSGKT AF  P+I 
Sbjct  170  TFAEIDLGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIIS  229

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLN---KWQMNPYDRGSAFA  103
             +  +    +   +G  T    A +L+   +  +  ++    FA
Sbjct  230  GIMRSRPPPRS--RGSRTAYPLALILSPTRELSVQIHEEARKFA  271


>sp|Q6BU54|DED1_DEBHA ATP-dependent RNA helicase DED1 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DED1 PE=3 SV=1
Length=630

 Score = 315 bits (808),  Expect = 1e-96, Method: Composition-based stats.
 Identities = 92/354 (26%), Positives = 153/354 (43%), Gaps = 55/354 (16%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P AL++ P+REL  Q  +  K+F        +R  ++ GG     Q+  LE G D++V T
Sbjct  240  PTALVMAPTRELVSQIFDEAKKFA---YRSWVRPSVVYGGADIGGQIRNLERGCDLLVAT  296

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL DL+  G+++L+ +++LVLDEAD +L  G+   I  +  +        +  Q ++ 
Sbjct  297  PGRLKDLLERGRVSLASIKYLVLDEADRMLDMGFEPQIRHIVQECD--MPGVEDRQTLMF  354

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT    +++ L+   +    ++ +    S  + +   ++ V  +               
Sbjct  355  SATFPK-EIQFLARDFLKEYIFLSVGRVGSTSENITQKILYVEDEE--------------  399

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                                      K    +  +  +     IIF  TK   DNL  + 
Sbjct  400  --------------------------KKSVLLDLLSANDNGLTIIFTETKRMADNLADFL  433

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
              QG         F    +HGDR  +ER++ L  FK G    L+ T VAARG+DI  V +
Sbjct  434  YDQG---------FPATAIHGDRSQYEREKALAAFKTGTAPILVATAVAARGLDIPNVSH  484

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYN  640
            ++N  LP +  +YVHRIGR GRA  +G+A +      + +   +     +    
Sbjct  485  IVNYDLPSDIDDYVHRIGRTGRAGNIGIATAFFNRNNKNIVKGLVDLLTEANQE  538


 Score = 93.3 bits (230),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 29/112 (26%), Positives = 49/112 (44%), Gaps = 6/112 (5%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + AF+   + P + + V+   +  PT +Q  S+P++  G D++  A+TGSGKTG F  PV
Sbjct  155  ITAFTAPPLDPLLVENVKLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPV  214

Query  61   IQIVYETLKDQQEGKKGKTT---IKTGAS---VLNKWQMNPYDRGSAFAIGS  106
            +   Y     +     G  +   +   A       +     +D    FA  S
Sbjct  215  LSESYMNGPAEVPETAGAFSSHKVYPTALVMAPTRELVSQIFDEAKKFAYRS  266


>sp|P25888|RHLE_ECOLI ATP-dependent RNA helicase RhlE OS=Escherichia 
coli (strain K12) OX=83333 GN=rhlE PE=1 SV=3
Length=454

 Score = 310 bits (793),  Expect = 1e-96, Method: Composition-based stats.
 Identities = 124/439 (28%), Positives = 194/439 (44%), Gaps = 78/439 (18%)

Query  203  VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAP  262
            + F      LGL+ +I   +  Q       ++   +                 +A ++  
Sbjct  1    MSFDS----LGLSPDILRAVAEQGYREPTPIQQQAIPAVL--------EGRDLMASAQTG  48

Query  263  DGYIVKS-----QHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPK  317
             G          QH    Q       P   +ALI+ P+RELA Q   N++ + KY++   
Sbjct  49   TGKTAGFTLPLLQHLITRQPHAKGRRP--VRALILTPTRELAAQIGENVRDYSKYLN---  103

Query  318  LRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLS  377
            +R L++ GGV+   Q+  L  GVD++V TPGRL DL     + L QV  LVLDEAD +L 
Sbjct  104  IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLD  163

Query  378  QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSV  437
             G+   I R+  ++P       + Q ++ SAT  S D+K L+EK++H P  +++   ++ 
Sbjct  164  MGFIHDIRRVLTKLPA------KRQNLLFSATF-SDDIKALAEKLLHNPLEIEVARRNTA  216

Query  438  PDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYA  497
             D V   V  V+ K  R                                        E  
Sbjct  217  SDQVTQHVHFVDKKRKR----------------------------------------ELL  236

Query  498  VRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQN  557
               I +    Q ++F RTK   ++L +   + G              +HG++    R + 
Sbjct  237  SHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDG---------IRSAAIHGNKSQGARTRA  287

Query  558  LERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAIS  617
            L  FK GD+R L+ TD+AARG+DI  +P+V+N  LP+  ++YVHRIGR GRA   G A+S
Sbjct  288  LADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALS  347

Query  618  LVATEKEKVWYHVCSSRGK  636
            LV  ++ K+   +     K
Sbjct  348  LVCVDEHKLLRDIEKLLKK  366


 Score = 111 bits (278),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 5/103 (5%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F  +G+ P+I +AV E  +  PT IQ ++IP +L G D++ +A+TG+GKT  F++P++Q
Sbjct  2    SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ  61

Query  63   IVYETLKDQQEGKKGKTTIKTGAS-VLNKWQMNPYDRGSAFAI  104
             +      +Q   KG+  ++        +      +    ++ 
Sbjct  62   HLI----TRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSK  100


>sp|A6RW56|RRP3_BOTFB ATP-dependent rRNA helicase rrp3 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=rrp3 PE=3 SV=1
Length=486

 Score = 310 bits (795),  Expect = 1e-96, Method: Composition-based stats.
 Identities = 106/502 (21%), Positives = 189/502 (38%), Gaps = 81/502 (16%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K+ KDLG+   +              ++   +                 + L++   G  
Sbjct  60   KSFKDLGIVDSLCEACDTLGYKAPTPIQRESIPLAL--------QGRDLIGLAETGSGKT  111

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
                      +      P     L++ P+RELA Q     +     I   +++  +I+GG
Sbjct  112  AAFALPI---LQALLDKPQPLFGLVLAPTRELAYQISQQFEALGSVI---RVKCAVIVGG  165

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            +    Q   L     I+V TPGRL D + +T   +L  +++LV+DEAD LL   +   ++
Sbjct  166  MDMVPQSIALGKKPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILD  225

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
            ++   +P      +  +  + SAT+ S  V+ L    +  P  V +              
Sbjct  226  KILKVLP------RERRTYLFSATI-SSKVESLQRASLKDPLRVSI--------------  264

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
               +    +    L +++I    +H                      K  Y +  + E  
Sbjct  265  ---SSNKYQTVSTLIQNYIFIPLIH----------------------KDTYLIYLLNEFA  299

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
               AIIF RT  +   +       G         F  + LHG      R   L +F+ G 
Sbjct  300  GQSAIIFTRTVNETQRIAILLRTLG---------FGAIPLHGQLSQSSRLGALNKFRAGS  350

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
               L+ TDVAARG+DI  V  V+N  +P + + Y+HR+GR  RA + G AIS+V     +
Sbjct  351  REILVATDVAARGLDIPSVDVVLNYDVPQDSKTYIHRVGRTARAGKSGHAISVVTQYDLE  410

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFD  685
            ++  + ++ GK     +++              + E + H    +  +  D         
Sbjct  411  IFMRIEAALGKK----QVEYPTVKDEVMVFKPRVEEAQRHARNEMKNLHED-----RGKK  461

Query  686  GKVTYGQKRAAGGGSYKGHVDI  707
            G V  G++ A G  + +G  ++
Sbjct  462  GAVLKGRRPANG--AKRGRDEM  481


 Score = 107 bits (266),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 51/103 (50%), Gaps = 9/103 (9%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +F ++G++  + +A + + +  PT IQ ESIPL L G D++  AETGSGKT AF++P++
Sbjct  60   KSFKDLGIVDSLCEACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPIL  119

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            Q + +         K +       +   +       +  A   
Sbjct  120  QALLD---------KPQPLFGLVLAPTRELAYQISQQFEALGS  153


>sp|Q9SQV1|RH40_ARATH DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis 
thaliana OX=3702 GN=RH40 PE=2 SV=1
Length=1088

 Score = 325 bits (834),  Expect = 2e-96, Method: Composition-based stats.
 Identities = 118/453 (26%), Positives = 181/453 (40%), Gaps = 78/453 (17%)

Query  187  TMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEE  246
              H+      +I   ++ F    +  GL  EI   + +        ++            
Sbjct  419  KQHEVTTTGENIPAPYITF----ESSGLPPEILRELLSAGFPSPTPIQAQTWPIAL----  470

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNN  305
                     VA++K   G  +         +   +    N P  LI+ P+RELA Q  + 
Sbjct  471  ----QSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQIQDE  526

Query  306  IKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVR  365
              +F +   + ++    + GG     QL  LE G DIVV TPGRL+D++    ++  QV 
Sbjct  527  ALRFGR---SSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILEMKMIDFQQVS  583

Query  366  FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF  425
             LVLDEAD +L  G+   I ++ N+IP       R Q ++ +AT    +V+K++  ++  
Sbjct  584  LLVLDEADRMLDMGFEPQIRKIVNEIP------PRRQTLMYTATWPK-EVRKIASDLLVN  636

Query  426  PTWVDLKGEDS--VPDTVHHV--VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANS  481
            P  V++   D       +     VVP   K  RL + L                      
Sbjct  637  PVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQILR---------------------  675

Query  482  PEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFS  541
                                 + +  + IIFC TK  CD+L +            G  F 
Sbjct  676  --------------------SQERGSKVIIFCSTKRLCDHLAR----------SVGRHFG  705

Query  542  CVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH  601
             V +HGD+   ER   L +F+ G    LI TDVAARG+DI  +  VIN   P   ++YVH
Sbjct  706  AVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVH  765

Query  602  RIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            RIGR GRA   G+A +    +  K    +    
Sbjct  766  RIGRTGRAGATGVAFTFFTEQDWKYAPDLIKVL  798


 Score = 104 bits (259),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 27/104 (26%), Positives = 43/104 (41%), Gaps = 5/104 (5%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F   G+ PEI + +    +  PT IQA++ P+ L   D++  A+TGSGKT  + IP   
Sbjct  436  TFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFI  495

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            ++     D + G           +   +      D    F   S
Sbjct  496  LLRHCRNDSRNG-----PTVLILAPTRELATQIQDEALRFGRSS  534


>sp|O13370|DED1_SCHPO ATP-dependent RNA helicase ded1 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=ded1 
PE=1 SV=1
Length=636

 Score = 315 bits (807),  Expect = 2e-96, Method: Composition-based stats.
 Identities = 91/361 (25%), Positives = 148/361 (41%), Gaps = 56/361 (16%)

Query  281  KFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGV  340
            +     P  LI+ P+REL  Q     +   K+     +R   + GG   R Q+  ++ G 
Sbjct  250  RPRKAYPTTLILAPTRELVCQIHEESR---KFCYRSWVRPCAVYGGADIRAQIRQIDQGC  306

Query  341  DIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR  400
            D++  TPGRL DL+  G+++L+ ++FLVLDEAD +L  G+   I  +        +  + 
Sbjct  307  DLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEG--ADMTSVEE  364

Query  401  LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLG  460
             Q ++ SAT    D++ L+   +    ++ +    S  + +   VV V     R      
Sbjct  365  RQTLMFSATFP-RDIQLLARDFLKDYVFLSVGRVGSTSENITQKVVHVEDSEKR------  417

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD-QAIIFCRTKIDC  519
                                               Y +  +     +   +IF  TK   
Sbjct  418  ----------------------------------SYLLDILHTLPPEGLTLIFVETKRMA  443

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            D L  Y +            F    +HGDR   ER++ LE F+ G    ++ T VA+RG+
Sbjct  444  DTLTDYLLN---------SNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGL  494

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCY  639
            DI  V +VIN  LP +  +YVHRIGR GRA   G A++      + +   +     +   
Sbjct  495  DIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRNNKGIAKELIELLQEANQ  554

Query  640  N  640
             
Sbjct  555  E  555


 Score = 94.8 bits (234),  Expect = 7e-19, Method: Composition-based stats.
 Identities = 23/111 (21%), Positives = 47/111 (42%), Gaps = 9/111 (8%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F+   +   + Q ++   +  PT +Q  SIP++  G D++  A+TGSGKT  F  P+
Sbjct  168  VNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPI  227

Query  61   IQIVYETLK-------DQQEGKKGKTTIKT--GASVLNKWQMNPYDRGSAF  102
            + + ++          D   G + +    T    +   +     ++    F
Sbjct  228  LSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKF  278


>sp|Q75HJ0|RH37_ORYSJ DEAD-box ATP-dependent RNA helicase 37 OS=Oryza 
sativa subsp. japonica OX=39947 GN=PL10A PE=2 SV=1
Length=637

 Score = 315 bits (806),  Expect = 3e-96, Method: Composition-based stats.
 Identities = 102/403 (25%), Positives = 163/403 (40%), Gaps = 57/403 (14%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPK--------ALIVEPSREL  298
                     +A ++   G          + +  ++  P  P+        ALI+ P+REL
Sbjct  206  PISIAGRDLMACAQTGSGKTAAFCFPIISGIMSSRP-PQRPRGSRTAYPLALILSPTREL  264

Query  299  AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGK  358
            + Q     ++F        +R ++  GG     QL  LE GV+I+V TPGRL DL+   +
Sbjct  265  SVQIHEEARKFA---YQTGVRVVVAYGGAPIHQQLRELERGVEILVATPGRLMDLLERAR  321

Query  359  LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKL  418
            ++L  V++L LDEAD +L  G+   I ++  Q+          Q ++ SAT    +++++
Sbjct  322  VSLQMVKYLALDEADRMLDMGFEPQIRKIVEQMD--MPPRGVRQTMLFSATFPK-EIQRM  378

Query  419  SEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPG  478
            +   +    ++ +    S  D +   V  V     R +        + +  H K      
Sbjct  379  ASDFLADYIFLAVGRVGSSTDLIAQRVEFVLEADKRSYLMDLLHAQKANGTHGKQAL---  435

Query  479  ANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGH  538
                                           ++F  TK   D LE +    G        
Sbjct  436  ------------------------------TLVFVETKRGADALENWLYTNG--------  457

Query  539  QFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQN  598
             F    +HGDR   ER+  L  FK G    L+ TDVAARG+DI  V +VIN  LP++  +
Sbjct  458  -FPATSIHGDRTQQEREYALRSFKSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDD  516

Query  599  YVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
            YVHRIGR GRA + GLA +        +   +C    +     
Sbjct  517  YVHRIGRTGRAGKSGLATAFFNEGNLSLARPLCELMQEANQEV  559


 Score = 108 bits (269),  Expect = 5e-23, Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 54/106 (51%), Gaps = 5/106 (5%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F+E+ +   + + +    ++ PT +Q  +IP+ + G D++  A+TGSGKT AF  P+
Sbjct  173  VNTFAEIDLGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPI  232

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLN---KWQMNPYDRGSAFA  103
            I  +  +   Q+   +G  T    A +L+   +  +  ++    FA
Sbjct  233  ISGIMSSRPPQRP--RGSRTAYPLALILSPTRELSVQIHEEARKFA  276


>sp|Q6BJX6|DHH1_DEBHA ATP-dependent RNA helicase DHH1 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DHH1 PE=3 SV=2
Length=516

 Score = 310 bits (795),  Expect = 3e-96, Method: Composition-based stats.
 Identities = 114/514 (22%), Positives = 196/514 (38%), Gaps = 91/514 (18%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K  +D  L  E+   +          ++   +               G   L++A +G  
Sbjct  30   KTFEDFPLKRELLMGIFEAGFEKPSPVQEESIPMAL----------AGRDILARAKNG-T  78

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             K+       + Q +   N  +ALI+ P+RELA QT   ++   K++    L+ ++  GG
Sbjct  79   GKTASFVIPCLQQARPKVNKIQALILVPTRELALQTSQVVRTLGKHLG---LQCMVTTGG  135

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
             + RD +  L + V ++VGTPGR+ DL S    +LS+    V+DEAD +LS+ +   I +
Sbjct  136  TSLRDDILRLNDPVHVLVGTPGRVLDLASRKVADLSECPLFVMDEADKMLSREFKGIIEQ  195

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVV  446
            +    P         Q ++ SAT     VK   ++ +  P  ++L  ++     +     
Sbjct  196  ILAFFPTT------RQSLLFSATFP-LAVKSFMDQHLTKPYEINLM-DELTLRGISQFYA  247

Query  447  PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM  506
             V  K                                         K         + ++
Sbjct  248  FVEEKQ----------------------------------------KLHCLNTLFSKLQI  267

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
            +QAIIFC +    + L +   + G         +SC   H     H R +    F++G V
Sbjct  268  NQAIIFCNSTNRVELLAKKITELG---------YSCYYSHAKMPQHARNKVFHEFRQGKV  318

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
            R L+C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR   +GLAI+L++      
Sbjct  319  RVLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYN  378

Query  627  WYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDG  686
             Y +    G                      + + I++ L    ++        +D+   
Sbjct  379  LYKIEQELGT-----------------EIKPIPATIDKSLYVAENEAAVPRPFKIDQLPK  421

Query  687  KVTYGQKRAAGGGSYKGHVDILAPTVQELAALEK  720
                  K++  G  YKG  + ++  V  +     
Sbjct  422  GNETVHKKS--GYEYKGQPE-VSSNVAGMPQQVP  452


 Score = 98.3 bits (243),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 23/93 (25%), Positives = 39/93 (42%), Gaps = 9/93 (10%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F +  +  E+   + E  +  P+ +Q ESIP+ L G D+L  A+ G+GKT +F IP +
Sbjct  30   KTFEDFPLKRELLMGIFEAGFEKPSPVQEESIPMALAGRDILARAKNGTGKTASFVIPCL  89

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
            Q     +   Q                 +  + 
Sbjct  90   QQARPKVNKIQ---------ALILVPTRELALQ  113


>sp|Q84W89|RH37_ARATH DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis 
thaliana OX=3702 GN=RH37 PE=2 SV=2
Length=633

 Score = 314 bits (804),  Expect = 4e-96, Method: Composition-based stats.
 Identities = 103/402 (26%), Positives = 168/402 (42%), Gaps = 55/402 (14%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNA-------PKALIVEPSRELA  299
                     +A ++   G          + + + + +          P A+I+ P+RELA
Sbjct  191  PILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELA  250

Query  300  EQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKL  359
             Q  +  K+F        ++ ++  GG     QL  LE GVDI+V TPGRL+DL+   ++
Sbjct  251  SQIHDEAKKFS---YQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARV  307

Query  360  NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLS  419
            ++  +RFL LDEAD +L  G+   I ++  Q+          Q ++ SAT    ++++L+
Sbjct  308  SMQMIRFLALDEADRMLDMGFEPQIRKIVEQMD--MPPRGVRQTLLFSATFP-REIQRLA  364

Query  420  EKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGA  479
               +    ++ +    S  D +   V  V     R       SH+       ++N   G 
Sbjct  365  ADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKR-------SHLMDLLHAQRENGIQGK  417

Query  480  NSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQ  539
             +                            ++F  TK   D+LE +    G         
Sbjct  418  QAL--------------------------TLVFVETKRGADSLENWLCING---------  442

Query  540  FSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNY  599
            F    +HGDR   ER+  L+ FK G    L+ TDVAARG+DI  V +V+N  LP++  +Y
Sbjct  443  FPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDY  502

Query  600  VHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
            VHRIGR GRA + GLA +        +   +     +     
Sbjct  503  VHRIGRTGRAGKSGLATAFFNDGNTSLARPLAELMQEANQEV  544


 Score = 108 bits (269),  Expect = 5e-23, Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 5/106 (5%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F+E+ +   +   +    ++ PT +Q  +IP++L G D++  A+TGSGKT AF  P+
Sbjct  158  VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPI  217

Query  61   IQIVYETLKDQQEGKKGKTTIKTGA---SVLNKWQMNPYDRGSAFA  103
            I  + +    Q+   +G  T+   A   S   +     +D    F+
Sbjct  218  ISGIMKDQHVQRP--RGSRTVYPLAVILSPTRELASQIHDEAKKFS  261


>sp|Q0CIQ3|RRP3_ASPTN ATP-dependent rRNA helicase rrp3 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=rrp3 
PE=3 SV=2
Length=445

 Score = 308 bits (788),  Expect = 5e-96, Method: Composition-based stats.
 Identities = 96/401 (24%), Positives = 159/401 (40%), Gaps = 64/401 (16%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNI  306
                     + L++   G            +      P    +LI+ P+RELA+Q  + +
Sbjct  60   PIALEGRDLIGLAETGSGKTAAFVL---PMLQALMDKPQQFHSLILAPTRELAQQIAHTV  116

Query  307  KQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVR  365
            +     I    +R  L+IGG+    Q   L     ++V TPGRL D + +T   +L  ++
Sbjct  117  EALGARIS---VRCTLLIGGMDMISQAIALGKKPHVIVATPGRLLDHLENTKGFSLRTLK  173

Query  366  FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF  425
            +LVLDEAD LL   +   ++++   +P+        +  + SAT+ S  V+ L    +  
Sbjct  174  YLVLDEADRLLDLDFGPILDKLLRLLPK-------RKTYLFSATM-SSKVESLQRASLSD  225

Query  426  PTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW  485
            P  V +  ++     +    + +  K                                  
Sbjct  226  PVRVSVSTKNQTASKLLQSYLFIPHK----------------------------------  251

Query  486  SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL  545
                   K  Y V  + E      IIF RT  +   L       G         F  + +
Sbjct  252  ------FKDFYLVYLLNERAGQMGIIFTRTVHETQRLSIMLRNLG---------FPAIPI  296

Query  546  HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR  605
            HG      R  +L +F+      LI TDVAARG+DI  V YV+N  LP + + Y+HR+GR
Sbjct  297  HGQLSQSARLASLNKFRARSRNLLIATDVAARGLDIPAVDYVLNYDLPQDSKTYIHRVGR  356

Query  606  VGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKED  646
              RA + G+A S V   + ++W  +  + GK     + ++D
Sbjct  357  TARAGKSGIAFSFVTQYEVELWLRIEDALGKKVEEYKPEKD  397


 Score = 103 bits (256),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 2/130 (2%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F E+GV+  + +A EE+ +  PT IQ   IP+ L G D++  AETGSGKT AF +P++
Sbjct  28   KTFRELGVIDSLCEACEELGYTAPTPIQERCIPIALEGRDLIGLAETGSGKTAAFVLPML  87

Query  62   QIVYETLKDQQEGKKGKTT--IKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEW  119
            Q + +  +         T    +  A  +         R +    G D +       K+ 
Sbjct  88   QALMDKPQQFHSLILAPTRELAQQIAHTVEALGARISVRCTLLIGGMDMISQAIALGKKP  147

Query  120  HGCRATKGLM  129
            H   AT G +
Sbjct  148  HVIVATPGRL  157


>sp|Q0UU86|IF4A_PHANO ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=TIF1 PE=3 SV=1
Length=396

 Score = 305 bits (782),  Expect = 7e-96, Method: Composition-based stats.
 Identities = 114/426 (27%), Positives = 188/426 (44%), Gaps = 71/426 (17%)

Query  228  FPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN------AQVTQ  279
            F A  LK   L+  + +G E      +   + + K  D        +G       + + +
Sbjct  25   FDAMNLKAELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISTLQK  84

Query  280  TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
                  A +ALI+ P+RELA+Q    +     ++D   +     IGG + RD +  L++G
Sbjct  85   IDSNVKACQALILAPTRELAQQIQKVVVAIGDFMD---VACHACIGGTSVRDDMKALQDG  141

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
              +VVGTPGR+ D++    L    ++  VLDEAD +LS+G+++ I  +   +PQ T    
Sbjct  142  PQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEADEMLSRGFTEQIYDIFQLLPQST----  197

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              QV++ SAT+   DV +++ K M  P  + +K ++   + +    + V  +  +L    
Sbjct  198  --QVVLLSATMP-QDVLEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKEDWKL----  250

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
                                            L   Y    I      QA+IFC T+   
Sbjct  251  ------------------------------DTLSDLYETVTIT-----QAVIFCNTRRKV  275

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            D L                 F+   +HGD    +R   ++ F+ G  R LI TD+ ARGI
Sbjct  276  DWLTDKLT---------ARDFTVSAMHGDMDQAQRDVIMKEFRSGSSRVLIATDLLARGI  326

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCY  639
            D+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V  +  ++   +     +  Y
Sbjct  327  DVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREI-----EQFY  381

Query  640  NTRLKE  645
            +T+++E
Sbjct  382  STQIEE  387


 Score = 91.7 bits (226),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 23/77 (30%), Positives = 39/77 (51%), Gaps = 0/77 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +F  M +  E+ + V    +  P+ IQ  +I  ++ G DV+  A++G+GKT  FSI  +Q
Sbjct  24  SFDAMNLKAELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISTLQ  83

Query  63  IVYETLKDQQEGKKGKT  79
            +   +K  Q      T
Sbjct  84  KIDSNVKACQALILAPT  100


>sp|A6ZSX1|RRP3_YEAS7 ATP-dependent rRNA helicase RRP3 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=RRP3 PE=3 
SV=1
Length=501

 Score = 309 bits (791),  Expect = 1e-95, Method: Composition-based stats.
 Identities = 110/442 (25%), Positives = 175/442 (40%), Gaps = 68/442 (15%)

Query  236  AELKFNFGEEEFKFPPKDGFVALSKAPDGYIV---KSQHSGNAQVTQTKFL-----PNAP  287
             EL        +  P      A+  A +G+ +       SG         L        P
Sbjct  90   PELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQEP  149

Query  288  K-ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
              A I+ P+RELA+Q           +    +R   I+GG+   DQ   L     I++ T
Sbjct  150  YYACILAPTRELAQQIKETFDSLGSLMG---VRSTCIVGGMNMMDQARDLMRKPHIIIAT  206

Query  347  PGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            PGRL D + +T   +L +++FLV+DEAD LL   +   ++R+   IP      +     +
Sbjct  207  PGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIP-----TQERTTYL  261

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT+ S  + KL    +  P    +  +    DT+   ++ V                 
Sbjct  262  FSATMTS-KIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVP----------------  304

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                                      LK  Y +  + E      IIF RTK + + L   
Sbjct  305  ------------------------GGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGL  340

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
                         +FS   LHGD   ++R   L+ FK G    L+ TDVAARG+DI  V 
Sbjct  341  ---------CNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDVAARGLDIPSVD  391

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
             V+N  +P + ++Y+HR+GR  RA R G +ISLV+    ++   +    GK      + +
Sbjct  392  IVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVLGKKLPKESVDK  451

Query  646  DGGCTIWYNEMQLLSEIEEHLN  667
            +   T+  +  +   E+   +N
Sbjct  452  NIILTLRDSVDKANGEVVMEMN  473


 Score = 108 bits (269),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 47/64 (73%), Gaps = 0/64 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +FSE+ ++PE+ QA + +++  PT IQ+++IP  L G D++  A+TGSGKT AF+IP++ 
Sbjct  82   SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILN  141

Query  63   IVYE  66
             ++ 
Sbjct  142  RLWH  145


>sp|A3LWX3|DHH1_PICST ATP-dependent RNA helicase DHH1 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DHH1 PE=3 SV=1
Length=509

 Score = 309 bits (791),  Expect = 1e-95, Method: Composition-based stats.
 Identities = 111/501 (22%), Positives = 193/501 (39%), Gaps = 90/501 (18%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K+ +D  L  E+   +          ++   +               G   L++A +G  
Sbjct  30   KSFEDFNLKRELLMGIFEAGFEKPSPIQEESIPMAL----------AGRDVLARAKNG-T  78

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             K+       + Q K   N  +ALI+ P+RELA QT   ++   K++    ++ ++  GG
Sbjct  79   GKTASFIIPSLQQIKPKLNKIQALILVPTRELALQTSQVVRTLGKHLG---IQCMVTTGG  135

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
             + +D +  L + V ++VGTPGR+ DL +    +LS+    V+DEAD +LS+ +   I +
Sbjct  136  TSLKDDILRLNDPVHVLVGTPGRVLDLAARSVADLSECPLFVMDEADKMLSREFKGIIEQ  195

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVV  446
            +    P      K  Q ++ SAT     VK   +K ++ P  ++L  ++     +     
Sbjct  196  ILEFFP------KNRQSLLFSATFP-LAVKSFMDKHLNKPYEINLM-DELTLRGITQYYA  247

Query  447  PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM  506
             V  K                                         K         + ++
Sbjct  248  FVEEKQ----------------------------------------KLHCLNTLFSKLQI  267

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
            +Q+IIFC +    + L +   + G         +SC   H       R +    F++G V
Sbjct  268  NQSIIFCNSTNRVELLAKKITELG---------YSCYYSHAKMPQQARNKVFHEFRQGKV  318

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
            R L+C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR   +GLAI+L++      
Sbjct  319  RNLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYS  378

Query  627  WYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDG  686
             Y +    G                      + + I+  L    ++        +++   
Sbjct  379  LYKIEQELGT-----------------EIKPIPATIDRKLYVADNEDAIPKPFKIEQLPK  421

Query  687  KVTYGQKRAAGGGSYKGHVDI  707
                   RA  G  YKG  ++
Sbjct  422  GNEKVHTRA--GYEYKGQPEV  440


 Score = 102 bits (254),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 26/93 (28%), Positives = 41/93 (44%), Gaps = 9/93 (10%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +F +  +  E+   + E  +  P+ IQ ESIP+ L G DVL  A+ G+GKT +F IP +
Sbjct  30   KSFEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDVLARAKNGTGKTASFIIPSL  89

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
            Q +   L   Q                 +  + 
Sbjct  90   QQIKPKLNKIQ---------ALILVPTRELALQ  113


>sp|Q75EW9|RRP3_EREGS ATP-dependent rRNA helicase RRP3 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=RRP3 PE=3 SV=2
Length=486

 Score = 308 bits (789),  Expect = 1e-95, Method: Composition-based stats.
 Identities = 105/463 (23%), Positives = 174/463 (38%), Gaps = 76/463 (16%)

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFL-----PNAPK-ALIVEP  294
            N    +             +  D   +    SG         L        P  A I+ P
Sbjct  83   NLNFTKPTPIQSKAIPPALQGKDIIGLAQTGSGKTAAFAIPILNRLWHDQQPYYACILAP  142

Query  295  SRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV  354
            +RELA+Q           +    +R   I+GG+   DQ   L     I++ TPGRL D +
Sbjct  143  TRELAQQIKETFDSLGSLMG---VRTTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHL  199

Query  355  -STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSF  413
             +T    L +++FLV+DEAD LL   +   ++R+   IP      K     + SAT+ S 
Sbjct  200  ENTKGFALRKLQFLVMDEADRLLDMEFGPVLDRILKNIP-----TKGRTTYLFSATMTS-  253

Query  414  DVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKD  473
             + KL    +  P    +  +    DT+   ++ V                         
Sbjct  254  KIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLIVVP------------------------  289

Query  474  NTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGP  533
                              LK  + +  + E      I+F RTK + + +           
Sbjct  290  ----------------GGLKNTFLIYLLNEFIGKTTIVFTRTKANAERISGL--------  325

Query  534  DKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP  593
                 +FS   LHGD   ++R   L+ FK G    L+ TDVAARG+DI  V  VIN  +P
Sbjct  326  -CNLLEFSATALHGDLNQNQRTGALDLFKAGKKSILVATDVAARGLDIPSVDLVINYDIP  384

Query  594  DEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWY  653
             + ++Y+HR+GR  RA R G ++SLV+    ++   +    GK      +          
Sbjct  385  VDSKSYIHRVGRTARAGRSGKSVSLVSQYDLELILRIEEVLGKKLPKENV----------  434

Query  654  NEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAA  696
             +  ++  + + ++    +V  ++     E   +    + R A
Sbjct  435  -DKSIVLSLRDSVDKANGEVIMELNRRNKEKQTRGKGRRSRTA  476


 Score = 109 bits (271),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 28/72 (39%), Positives = 50/72 (69%), Gaps = 3/72 (4%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            ++F E+ ++PE+ +A + +++  PT IQ+++IP  L G D++  A+TGSGKT AF+IP++
Sbjct  66   SSFRELDLVPELIEACDNLNFTKPTPIQSKAIPPALQGKDIIGLAQTGSGKTAAFAIPIL  125

Query  62   QIVYETLKDQQE  73
              ++    DQQ 
Sbjct  126  NRLWH---DQQP  134


>sp|P38712|RRP3_YEAST ATP-dependent rRNA helicase RRP3 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 
GN=RRP3 PE=1 SV=2
Length=501

 Score = 308 bits (790),  Expect = 2e-95, Method: Composition-based stats.
 Identities = 110/442 (25%), Positives = 176/442 (40%), Gaps = 68/442 (15%)

Query  236  AELKFNFGEEEFKFPPKDGFVALSKAPDGYIV---KSQHSGNAQVTQTKFL-----PNAP  287
             EL        +  P      A+  A +G+ +       SG         L        P
Sbjct  90   PELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQEP  149

Query  288  K-ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
              A I+ P+RELA+Q           +    +R   I+GG+   DQ   L     I++ T
Sbjct  150  YYACILAPTRELAQQIKETFDSLGSLMG---VRSTCIVGGMNMMDQARDLMRKPHIIIAT  206

Query  347  PGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            PGRL D + +T   +L +++FLV+DEAD LL   +   ++R+   IP      +     +
Sbjct  207  PGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIP-----TQERTTYL  261

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT+ S  + KL    +  P    +  +    DT+   ++ V                 
Sbjct  262  FSATMTS-KIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVP----------------  304

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                                      LK  Y +  + E      IIF RTK + + L   
Sbjct  305  ------------------------GGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGL  340

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
                         +FS   LHGD   ++R  +L+ FK G    L+ TDVAARG+DI  V 
Sbjct  341  ---------CNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILVATDVAARGLDIPSVD  391

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
             V+N  +P + ++Y+HR+GR  RA R G +ISLV+    ++   +    GK      + +
Sbjct  392  IVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVLGKKLPKESVDK  451

Query  646  DGGCTIWYNEMQLLSEIEEHLN  667
            +   T+  +  +   E+   +N
Sbjct  452  NIILTLRDSVDKANGEVVMEMN  473


 Score = 108 bits (269),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 47/64 (73%), Gaps = 0/64 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +FSE+ ++PE+ QA + +++  PT IQ+++IP  L G D++  A+TGSGKT AF+IP++ 
Sbjct  82   SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILN  141

Query  63   IVYE  66
             ++ 
Sbjct  142  RLWH  145


>sp|Q2YUH3|CSHA_STAAB DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) OX=273036 
GN=cshA PE=3 SV=1
Length=506

 Score = 308 bits (789),  Expect = 2e-95, Method: Composition-based stats.
 Identities = 113/530 (21%), Positives = 208/530 (39%), Gaps = 92/530 (17%)

Query  208  NGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIV  267
            N K+LG++      +++        ++   + +               +  ++   G   
Sbjct  3    NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYAL--------QGIDILGQAQTGTGKTG  54

Query  268  KSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
                 G   + +  +     ++LI+ P+RELA Q    +++F +      ++ + + GG+
Sbjct  55   AF---GIPLIEKVVWK-QGVQSLILAPTRELAMQVAEQLREFSR---GQGVQVVTVFGGM  107

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM  387
                Q+  L+ G  IVVGTPGR+ D ++   L    +  L+LDEAD +++ G+ D +  +
Sbjct  108  PIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFI  167

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
             ++IP V     + Q ++ SAT+    ++ L ++ M  P  +     +     +      
Sbjct  168  MDKIPAV-----QRQTMLFSATMPKA-IQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTI  221

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
            V                                          + K +     +  H+ +
Sbjct  222  VKE----------------------------------------LEKFDTFTNFLDVHQPE  241

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
             AI+F RTK   D L    I +G         +    LHGD    +R + L++FK   + 
Sbjct  242  LAIVFGRTKRRVDELTSALISKG---------YKAEGLHGDITQAKRLEVLKKFKNDQIN  292

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             L+ TDVAARG+DI GV +V N  +P + ++Y HRIGR GRA + G+A++ V   +    
Sbjct  293  ILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYI  352

Query  628  YHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGK  687
              +  + G+     R                      H    +   E DIK  V+ +  K
Sbjct  353  RQIEDANGRKMSALR--------------------PPHRKEVLQAREDDIKEKVENWMSK  392

Query  688  VTYGQKRAAGGGSYKGH--VDILAPTVQELAALEKEAQTSFLHLGYLPNQ  735
             +  + +         +  VD++A  +QEL     E +        L  +
Sbjct  393  ESESRLKRISTELLNEYNDVDLVAALLQELVEANDEVEVQLTFEKPLSRK  442


 Score = 100 bits (248),  Expect = 8e-21, Method: Composition-based stats.
 Identities = 34/105 (32%), Positives = 51/105 (49%), Gaps = 10/105 (10%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M  F E+G+     Q++E M +  PT IQ +SIP  L G D+L  A+TG+GKTGAF IP+
Sbjct  1    MQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG  105
            I+ V             +       +   +  M   ++   F+ G
Sbjct  61   IEKVVWK----------QGVQSLILAPTRELAMQVAEQLREFSRG  95


>sp|Q55804|CRHR_SYNY3 RNA helicase CrhR OS=Synechocystis sp. (strain 
PCC 6803 / Kazusa) OX=1111708 GN=crhR PE=1 SV=1
Length=492

 Score = 307 bits (787),  Expect = 2e-95, Method: Composition-based stats.
 Identities = 118/486 (24%), Positives = 204/486 (42%), Gaps = 82/486 (17%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
            +    DLGL+ +    + +        ++   +                 +A S+   G 
Sbjct  6    TSTFADLGLSEKRCQLLADIGFEAPTQIQTEAIPLLLS--------GRDMLAQSQTGTGK  57

Query  266  IVKSQHSGNAQVTQTKFLPNA-PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
                     A     +  P    +ALI+ P+RELA+Q    +K F       +L  L + 
Sbjct  58   TAAF-----ALPLMDRIDPEGDLQALILTPTRELAQQVAEAMKDFSH---ERRLFILNVY  109

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG +   Q+  LE GV IVVGTPGR+ DL+   KL L  ++++VLDEAD +LS G+ D +
Sbjct  110  GGQSIERQIRSLERGVQIVVGTPGRVIDLIDRKKLKLETIQWVVLDEADEMLSMGFIDDV  169

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
              +  + P         Q    SAT+   ++K+L  + ++ P  V +K   S P  +   
Sbjct  170  KTILRKTP------PTRQTACFSATMP-REIKELVNQFLNDPALVTVKQTQSTPTRIEQQ  222

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
            +  V                                 P  WS      K +     ++  
Sbjct  223  LYHV---------------------------------PRGWS------KAKALQPILEME  243

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
              + AIIF RTK    +L     + G          S    HG+    +R++ + RF+ G
Sbjct  244  DPESAIIFVRTKQTAADLTSRLQEAG---------HSVDEYHGNLSQSQRERLVHRFRDG  294

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
             ++ ++ TD+AARG+D++ + +V+N  LPD  + Y+HRIGR GRA + G AI+LV     
Sbjct  295  KIKLVVATDIAARGLDVNNLSHVVNFDLPDNAETYIHRIGRTGRAGKTGKAIALVEPIDR  354

Query  625  KVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVE-----PDIKV  679
            ++   + +   +     +++          E + + +++E L   ++        P ++ 
Sbjct  355  RLLRSIENRLKQ-----QIEVCTIPNRSQVEAKRIEKLQEQLKEALTGERMASFLPLVRE  409

Query  680  PVDEFD  685
              DE+D
Sbjct  410  LSDEYD  415


 Score = 93.3 bits (230),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 23/63 (37%), Positives = 44/63 (70%), Gaps = 0/63 (0%)

Query  2   AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
           + F+++G+  +  Q + ++ +  PT IQ E+IPL+L G D+L  ++TG+GKT AF++P++
Sbjct  7   STFADLGLSEKRCQLLADIGFEAPTQIQTEAIPLLLSGRDMLAQSQTGTGKTAAFALPLM  66

Query  62  QIV  64
             +
Sbjct  67  DRI  69


>sp|A0A1D6LAB7|RH3B_MAIZE DEAD-box ATP-dependent RNA helicase 
3B, chloroplastic OS=Zea mays OX=4577 GN=RH3B PE=2 SV=1
Length=743

 Score = 315 bits (806),  Expect = 3e-95, Method: Composition-based stats.
 Identities = 122/442 (28%), Positives = 202/442 (46%), Gaps = 89/442 (20%)

Query  249  FPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNA--------PKALIVEPSRELAE  300
             P  +G   +++A  G   K+   G   + Q     +         P+ L++ P+RELA+
Sbjct  120  IPALEGRDLIARAKTG-TGKTLAFGIPMIKQLIEQDDGRITRRGRTPRVLVLAPTRELAK  178

Query  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN  360
            Q    IK+       PKL  + + GGV+   Q + L  GVD+VVGTPGR+ DL++ G L 
Sbjct  179  QVEKEIKE-----SAPKLGTVCVYGGVSYNVQQNALSRGVDVVVGTPGRIIDLINGGSLQ  233

Query  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
            L +V++LVLDEAD +L+ G+ + +  +  Q+P         Q ++ SAT+ S+ VKKLS 
Sbjct  234  LGEVQYLVLDEADQMLAVGFEEDVETILQQLPA------GRQSMLFSATMPSW-VKKLSR  286

Query  421  KIMHFPTWVDLKG--EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPG  478
            + ++ P  +DL G  ++ + + +    +P+   + R                        
Sbjct  287  RYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTTTSKRT-----------------------  323

Query  479  ANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGH  538
                        +L     V A    K  + I+F RTK D D +               +
Sbjct  324  ------------VLSDLITVYA----KGGKTIVFTRTKKDADEVSLALT----------N  357

Query  539  QFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQN  598
              +   LHGD   H+R++ L  F++G    L+ TDVAARG+DI  V  +I+  LP++ + 
Sbjct  358  SIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET  417

Query  599  YVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
            +VHR GR GRA + G AI +  + +++    +             + D GC   +     
Sbjct  418  FVHRSGRTGRAGKAGTAILMFTSSQKRTVKSL-------------ERDVGCNFEFISPPS  464

Query  659  LSEI----EEHLNCTISQVEPD  676
            + E+     EH+  T+  V P+
Sbjct  465  IEEVLESSAEHVIATLRGVHPE  486


 Score = 90.6 bits (223),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 10/157 (6%)

Query  7    MGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYE  66
            +G+  E+   +E+        IQ   +   L G D++  A+TG+GKT AF IP+I+ + E
Sbjct  93   LGLPDELVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKTLAFGIPMIKQLIE  152

Query  67   TLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATK  126
               D +  ++G+T      +   +            A     +C              ++
Sbjct  153  QD-DGRITRRGRTPRVLVLAPTRELAKQVEKEIKESAPKLGTVCVYGGVSYNVQQNALSR  211

Query  127  GLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKF  163
            G+       +V     G  R+       SL LG  ++
Sbjct  212  GV-------DVVVGTPG--RIIDLINGGSLQLGEVQY  239


>sp|Q5ACU6|RRP3_CANAL ATP-dependent rRNA helicase RRP3 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=RRP3 
PE=3 SV=3
Length=534

 Score = 308 bits (790),  Expect = 3e-95, Method: Composition-based stats.
 Identities = 100/442 (23%), Positives = 171/442 (39%), Gaps = 74/442 (17%)

Query  199  DKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVAL  258
                +KF K  K+L L  ++   +++        +++  +                 + L
Sbjct  111  PDAELKF-KTFKELNLVPDLLESIESMKFTKPTPIQSEAIPHAL--------EGKDIIGL  161

Query  259  SKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSRELAEQTLNNIKQFKKYIDNPK  317
            ++   G            + Q+ +    P  AL++ P+RELA Q  +          +  
Sbjct  162  AQTGSGKTAAFAIP----ILQSLWHAQQPYFALVLAPTRELAFQIKDTFDALG---SSMG  214

Query  318  LRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVS-TGKLNLSQVRFLVLDEADGLL  376
            LR   I+GG+   DQ   L     ++V TPGR+ D +  T   +L  +++LV+DEAD LL
Sbjct  215  LRSSCIVGGMDMMDQARDLMRKPHVIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLL  274

Query  377  SQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDS  436
               +   ++++   IP       +    + SAT+ +  ++KL    +H P  V +  +  
Sbjct  275  DMDFGPALDKILKVIPI------KRTTYLFSATMTN-KIEKLQRASLHNPVRVAVSSKYQ  327

Query  437  VPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEY  496
              D +   ++ VN                                           K   
Sbjct  328  TADNLVQSMMLVN----------------------------------------DGYKNTI  347

Query  497  AVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQ  556
             +  + E      I+F RT                    +   F+ V LHG     +R  
Sbjct  348  LIHLLNEFMGKSIIVFTRTVAHAQR---------TALLARILGFNAVPLHGQLSQSQRLG  398

Query  557  NLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAI  616
            +L +FK      L+ TDVAARG+DI  V  VIN  +P + + Y+HR+GR  RA R G +I
Sbjct  399  SLNKFKSNQANILVATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSI  458

Query  617  SLVATEKEKVWYHVCSSRGKGC  638
            SL+     +++  + S  GK  
Sbjct  459  SLITQYDLEMYLRIESVLGKKL  480


 Score = 110 bits (274),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 37/138 (27%), Positives = 62/138 (45%), Gaps = 20/138 (14%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F E+ ++P++ +++E M +  PT IQ+E+IP  L G D++  A+TGSGKT AF+IP++
Sbjct  118  KTFKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPIL  177

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD----------GLCC  111
            Q ++     QQ             +   +      D   A                 +  
Sbjct  178  QSLWH---AQQP------YFALVLAPTRELAFQIKDTFDALGSSMGLRSSCIVGGMDMMD  228

Query  112  QSREVKEW-HGCRATKGL  128
            Q+R++    H   AT G 
Sbjct  229  QARDLMRKPHVIVATPGR  246


>sp|A0A1D6GDY8|RH3A_MAIZE DEAD-box ATP-dependent RNA helicase 
3A, chloroplastic OS=Zea mays OX=4577 GN=RH3A PE=3 SV=1
Length=745

 Score = 314 bits (805),  Expect = 4e-95, Method: Composition-based stats.
 Identities = 123/438 (28%), Positives = 199/438 (45%), Gaps = 81/438 (18%)

Query  249  FPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNA--------PKALIVEPSRELAE  300
             P   G   +++A  G   K+   G   + Q     +         P+ L++ P+RELA+
Sbjct  120  IPALGGRDLIARAKTG-TGKTLAFGIPMIKQLMEQDDGRSTRRGRTPRVLVLAPTRELAK  178

Query  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN  360
            Q    IK+       PKL  + + GGV+   Q + L  GVD+VVGTPGR+ DL++ G L 
Sbjct  179  QVEKEIKE-----SAPKLGTVCVYGGVSYNVQQNALSRGVDVVVGTPGRIIDLINGGSLQ  233

Query  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
            L +V++LVLDEAD +L+ G+ + +  +  Q+P         Q ++ SAT+ S+ VKKLS 
Sbjct  234  LGEVQYLVLDEADQMLAVGFEEDVETILQQLPA------DRQSMLFSATMPSW-VKKLSR  286

Query  421  KIMHFPTWVDLKG--EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPG  478
            + ++ P  +DL G  ++ + + +    +P+   + R                        
Sbjct  287  RYLNNPLTIDLVGDQDEKLAEGIKLHAIPLTATSKRT-----------------------  323

Query  479  ANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGH  538
                        IL     V A    K  + I+F RTK D D +                
Sbjct  324  ------------ILSDLITVYA----KGGKTIVFTRTKKDADEVSLALT----------T  357

Query  539  QFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQN  598
              +   LHGD   H+R++ L  F++G    L+ TDVAARG+DI  V  +I+  LP++ + 
Sbjct  358  SIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET  417

Query  599  YVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
            +VHR GR GRA + G AI +  + +++    +   R  GC    +             ++
Sbjct  418  FVHRSGRTGRAGKAGTAILMFTSSQKRTVMSLE--RDVGCKFEFISPPSIE-------EV  468

Query  659  LSEIEEHLNCTISQVEPD  676
            L    EH+  T+  V P+
Sbjct  469  LESSAEHVIATLRGVHPE  486


 Score = 91.0 bits (224),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 34/157 (22%), Positives = 61/157 (39%), Gaps = 10/157 (6%)

Query  7    MGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYE  66
            +G+  E+   +E+        IQ   +   LGG D++  A+TG+GKT AF IP+I+ + E
Sbjct  93   LGLPDELVATLEKRGITHLFPIQRAVLIPALGGRDLIARAKTGTGKTLAFGIPMIKQLME  152

Query  67   TLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATK  126
               D +  ++G+T      +   +            A     +C              ++
Sbjct  153  QD-DGRSTRRGRTPRVLVLAPTRELAKQVEKEIKESAPKLGTVCVYGGVSYNVQQNALSR  211

Query  127  GLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKF  163
            G+       +V     G  R+       SL LG  ++
Sbjct  212  GV-------DVVVGTPG--RIIDLINGGSLQLGEVQY  239


>sp|P9WH05|DEAD_MYCTU ATP-dependent RNA helicase DeaD OS=Mycobacterium 
tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=deaD 
PE=1 SV=1
Length=563

 Score = 309 bits (792),  Expect = 4e-95, Method: Composition-based stats.
 Identities = 109/442 (25%), Positives = 189/442 (43%), Gaps = 71/442 (16%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
              DL +   +   + +        ++ A +       +         V L++   G    
Sbjct  15   FADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSD--------VVGLAQTGTGKTAA  66

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
                    +++       P+AL++ P+RELA Q      ++  Y+   +L  L I GG +
Sbjct  67   F---AIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYL--SQLNVLPIYGGSS  121

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
               QL+ L  G  +VVGTPGR+ D +    L+LS+V FLVLDEAD +L+ G++D + R+ 
Sbjct  122  YAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERIL  181

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
            ++ P+        QV + SAT+    ++KLS K +H P  V  K + +V + +    + V
Sbjct  182  SETPEYK------QVALFSATMPPA-IRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQV  234

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
              K D L                                           R ++    + 
Sbjct  235  ARKMDALT------------------------------------------RVLEVEPFEA  252

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
             I+F RTK   + + +    +G         FS   + GD    +R++ +   + GD+  
Sbjct  253  MIVFVRTKQATEEIAEKLRARG---------FSAAAISGDVPQAQRERTITALRDGDIDI  303

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            L+ TDVAARG+D+  + +V+N  +P + ++YVHRIGR GRA R G A+  V+  +  +  
Sbjct  304  LVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLK  363

Query  629  HVCSSRGKGCYNTRLKEDGGCT  650
             +  +  +     +L       
Sbjct  364  AIEKATRQTLTEAQLPTVEDVN  385


 Score = 101 bits (252),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 49/93 (53%), Gaps = 9/93 (10%)

Query  2   AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
           A F+++ + P + +A+ ++ +  PT IQA +IP ++ G DV+  A+TG+GKT AF+IP++
Sbjct  13  ATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPML  72

Query  62  QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
             +  T K  Q                 +  + 
Sbjct  73  SKIDITSKVPQ---------ALVLVPTRELALQ  96


>sp|P9WH04|DEAD_MYCTO ATP-dependent RNA helicase DeaD OS=Mycobacterium 
tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=deaD 
PE=3 SV=1
Length=563

 Score = 309 bits (792),  Expect = 4e-95, Method: Composition-based stats.
 Identities = 109/442 (25%), Positives = 189/442 (43%), Gaps = 71/442 (16%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
              DL +   +   + +        ++ A +       +         V L++   G    
Sbjct  15   FADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSD--------VVGLAQTGTGKTAA  66

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
                    +++       P+AL++ P+RELA Q      ++  Y+   +L  L I GG +
Sbjct  67   F---AIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYL--SQLNVLPIYGGSS  121

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
               QL+ L  G  +VVGTPGR+ D +    L+LS+V FLVLDEAD +L+ G++D + R+ 
Sbjct  122  YAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERIL  181

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
            ++ P+        QV + SAT+    ++KLS K +H P  V  K + +V + +    + V
Sbjct  182  SETPEYK------QVALFSATMPPA-IRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQV  234

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
              K D L                                           R ++    + 
Sbjct  235  ARKMDALT------------------------------------------RVLEVEPFEA  252

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
             I+F RTK   + + +    +G         FS   + GD    +R++ +   + GD+  
Sbjct  253  MIVFVRTKQATEEIAEKLRARG---------FSAAAISGDVPQAQRERTITALRDGDIDI  303

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            L+ TDVAARG+D+  + +V+N  +P + ++YVHRIGR GRA R G A+  V+  +  +  
Sbjct  304  LVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLK  363

Query  629  HVCSSRGKGCYNTRLKEDGGCT  650
             +  +  +     +L       
Sbjct  364  AIEKATRQTLTEAQLPTVEDVN  385


 Score = 101 bits (252),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 49/93 (53%), Gaps = 9/93 (10%)

Query  2   AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
           A F+++ + P + +A+ ++ +  PT IQA +IP ++ G DV+  A+TG+GKT AF+IP++
Sbjct  13  ATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPML  72

Query  62  QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
             +  T K  Q                 +  + 
Sbjct  73  SKIDITSKVPQ---------ALVLVPTRELALQ  96


>sp|Q0DM51|RH3_ORYSJ DEAD-box ATP-dependent RNA helicase 3, chloroplastic 
OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0827700 
PE=2 SV=2
Length=758

 Score = 315 bits (806),  Expect = 4e-95, Method: Composition-based stats.
 Identities = 119/438 (27%), Positives = 196/438 (45%), Gaps = 81/438 (18%)

Query  249  FPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNA--------PKALIVEPSRELAE  300
             P  DG   +++A  G   K+   G   + Q     +         P+ L++ P+RELA+
Sbjct  136  IPALDGRDLIARAKTG-TGKTLAFGIPMIKQLMEEDDGRSVRRGRIPRVLVLAPTRELAK  194

Query  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN  360
            Q    IK+       PKL  + + GGV+   Q + L  GVD+VVGTPGR+ DL++ G L 
Sbjct  195  QVEKEIKE-----SAPKLSTVCVYGGVSYNVQQNALSRGVDVVVGTPGRIIDLINGGSLQ  249

Query  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
            L +V++LVLDEAD +L+ G+ + +  +  Q+P         Q ++ SAT+  + VKKLS 
Sbjct  250  LGEVKYLVLDEADQMLAVGFEEDVETILQQLPA------ERQSMLFSATMPGW-VKKLSR  302

Query  421  KIMHFPTWVDLKG--EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPG  478
            + ++ P  +DL G  ++ + + +    +P+   + R                        
Sbjct  303  RYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRT-----------------------  339

Query  479  ANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGH  538
                        +L     V A    K  + I+F +TK D D +               +
Sbjct  340  ------------VLSDLITVYA----KGGKTIVFTKTKRDADEVSLALT----------N  373

Query  539  QFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQN  598
              +   LHGD   H+R++ L  F++G    L+ TDVAARG+DI  V  +I+  LP++ + 
Sbjct  374  SIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET  433

Query  599  YVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
            +VHR GR GRA + G AI +    + +    +   R  GC    +       +  +    
Sbjct  434  FVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLE--RDVGCRFDFISPPAIEDVLESSA--  489

Query  659  LSEIEEHLNCTISQVEPD  676
                 EH+  T+  V  +
Sbjct  490  -----EHVIATLRGVHTE  502


 Score = 89.4 bits (220),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 59/157 (38%), Gaps = 10/157 (6%)

Query  7    MGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYE  66
            +G+  ++   +E+        IQ   +   L G D++  A+TG+GKT AF IP+I+ + E
Sbjct  109  LGLPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFGIPMIKQLME  168

Query  67   TLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATK  126
               D +  ++G+       +   +            A     +C              ++
Sbjct  169  ED-DGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPKLSTVCVYGGVSYNVQQNALSR  227

Query  127  GLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKF  163
            G+       +V     G  R+       SL LG  K+
Sbjct  228  GV-------DVVVGTPG--RIIDLINGGSLQLGEVKY  255


>sp|Q8SRB2|DBP2_ENCCU ATP-dependent RNA helicase DBP2 OS=Encephalitozoon 
cuniculi (strain GB-M1) OX=284813 GN=DBP2 PE=3 SV=1
Length=495

 Score = 307 bits (785),  Expect = 6e-95, Method: Composition-based stats.
 Identities = 96/432 (22%), Positives = 168/432 (39%), Gaps = 71/432 (16%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             ++ G + E+   +  +       ++                     V +++   G  + 
Sbjct  89   FEEAGFSSEVVSSLVEKGFSEPTAIQGQGWPMALS--------GRDMVGIAQTGSGKTLS  140

Query  269  SQHSGN--AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
                    A+  Q     + P  L++ P+REL  Q    + +F        LR   + GG
Sbjct  141  FILPALVHAKDQQPLRRGDGPIVLVLAPTRELVMQIKKVVDEF---CGMFNLRSTAVYGG  197

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
             +++ Q+  L  G ++V+ TPGRL DL   G   LS+V FLVLDEAD +L  G+   + +
Sbjct  198  ASSQPQIRALHEGAEVVIATPGRLIDLHDQGHAPLSRVTFLVLDEADRMLDMGFEPQLRK  257

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED-SVPDTVHHVV  445
            +      +       Q ++ SAT    +V+ L+E  M+    V +  E+      +  +V
Sbjct  258  I------IPKTNANRQTLMWSATWP-REVRGLAESYMNEYIQVVVGNEELKTNSKIKQIV  310

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
               + +                                         K +  +  +   K
Sbjct  311  EVCSGRE----------------------------------------KEDKLIGVLDNFK  330

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+ I+FC  K  CD+LE    + G         +    LHGD+  + R + L+ F+ G 
Sbjct  331  GDKVIVFCNMKRTCDDLEYVLNRSG---------YGAAALHGDKSQNIRDKVLDDFRSGR  381

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAE-RMGLAISLVATEKE  624
               LI T+VA RG+D++ V  VIN   P   ++YVHRIGR  R   + G++ +      +
Sbjct  382  RPILIATEVAGRGLDVNDVKLVINFDFPGSCEDYVHRIGRTARGNTKEGISHTFFTVGDK  441

Query  625  KVWYHVCSSRGK  636
                 +     +
Sbjct  442  ANARELIRMLRE  453


 Score = 106 bits (264),  Expect = 8e-23, Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 4/102 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E G   E+  ++ E  +  PT IQ +  P+ L G D++  A+TGSGKT +F +P 
Sbjct  86   IQKFEEAGFSSEVVSSLVEKGFSEPTAIQGQGWPMALSGRDMVGIAQTGSGKTLSFILPA  145

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            +       KDQQ  ++G   I    +   +  M        F
Sbjct  146  LV----HAKDQQPLRRGDGPIVLVLAPTRELVMQIKKVVDEF  183


>sp|Q7A0D2|CSHA_STAAW DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus aureus (strain MW2) OX=196620 GN=cshA PE=3 
SV=1
Length=506

 Score = 307 bits (786),  Expect = 6e-95, Method: Composition-based stats.
 Identities = 113/530 (21%), Positives = 207/530 (39%), Gaps = 92/530 (17%)

Query  208  NGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIV  267
            N K+LG++      +++        ++   + +               +  ++   G   
Sbjct  3    NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYAL--------QGIDILGQAQTGTGKTG  54

Query  268  KSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
                 G   + +        ++LI+ P+RELA Q    +++F +      ++ + + GG+
Sbjct  55   AF---GIPLIEKVVGK-QGVQSLILAPTRELAMQVAEQLREFSR---GQGVQVVTVFGGM  107

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM  387
                Q+  L+ G  IVVGTPGR+ D ++   L    +  L+LDEAD +++ G+ D +  +
Sbjct  108  PIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFI  167

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
             ++IP V     + Q ++ SAT+    ++ L ++ M  P  +     +     +      
Sbjct  168  MDKIPAV-----QRQTMLFSATMPKA-IQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTI  221

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
            V                                          + K +     +  H+ +
Sbjct  222  VKE----------------------------------------LEKFDTFTNFLDVHQPE  241

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
             AI+F RTK   D L    I +G         +    LHGD    +R + L++FK   + 
Sbjct  242  LAIVFGRTKRRVDELTSALISKG---------YKAEGLHGDITQAKRLEVLKKFKNDQIN  292

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             L+ TDVAARG+DI GV +V N  +P + ++Y HRIGR GRA + G+A++ V   +    
Sbjct  293  ILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYI  352

Query  628  YHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGK  687
              +  + G+     R                      H    +   E DIK  V+ +  K
Sbjct  353  RQIEDANGRKMSALR--------------------PPHRKEVLQAREDDIKEKVENWMSK  392

Query  688  VTYGQKRAAGGGSYKGH--VDILAPTVQELAALEKEAQTSFLHLGYLPNQ  735
             +  + +         +  VD++A  +QEL     E +        L  +
Sbjct  393  ESESRLKRISTELLNEYNDVDLVAALLQELVEANDEVEVQLTFEKPLSRK  442


 Score = 102 bits (255),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 10/105 (10%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M  F E+G+     Q++E M +  PT IQ +SIP  L G D+L  A+TG+GKTGAF IP+
Sbjct  1    MQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG  105
            I+ V         GK+G  ++    +   +  M   ++   F+ G
Sbjct  61   IEKVV--------GKQGVQSL--ILAPTRELAMQVAEQLREFSRG  95


>sp|Q6G7M9|CSHA_STAAS DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=cshA 
PE=3 SV=1
Length=506

 Score = 307 bits (786),  Expect = 6e-95, Method: Composition-based stats.
 Identities = 113/530 (21%), Positives = 207/530 (39%), Gaps = 92/530 (17%)

Query  208  NGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIV  267
            N K+LG++      +++        ++   + +               +  ++   G   
Sbjct  3    NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYAL--------QGIDILGQAQTGTGKTG  54

Query  268  KSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
                 G   + +        ++LI+ P+RELA Q    +++F +      ++ + + GG+
Sbjct  55   AF---GIPLIEKVVGK-QGVQSLILAPTRELAMQVAEQLREFSR---GQGVQVVTVFGGM  107

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM  387
                Q+  L+ G  IVVGTPGR+ D ++   L    +  L+LDEAD +++ G+ D +  +
Sbjct  108  PIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFI  167

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
             ++IP V     + Q ++ SAT+    ++ L ++ M  P  +     +     +      
Sbjct  168  MDKIPAV-----QRQTMLFSATMPKA-IQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTI  221

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
            V                                          + K +     +  H+ +
Sbjct  222  VKE----------------------------------------LEKFDTFTNFLDVHQPE  241

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
             AI+F RTK   D L    I +G         +    LHGD    +R + L++FK   + 
Sbjct  242  LAIVFGRTKRRVDELTSALISKG---------YKAEGLHGDITQAKRLEVLKKFKNDQIN  292

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             L+ TDVAARG+DI GV +V N  +P + ++Y HRIGR GRA + G+A++ V   +    
Sbjct  293  ILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYI  352

Query  628  YHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGK  687
              +  + G+     R                      H    +   E DIK  V+ +  K
Sbjct  353  RQIEDANGRKMSALR--------------------PPHRKEVLQAREDDIKEKVENWMSK  392

Query  688  VTYGQKRAAGGGSYKGH--VDILAPTVQELAALEKEAQTSFLHLGYLPNQ  735
             +  + +         +  VD++A  +QEL     E +        L  +
Sbjct  393  ESESRLKRISTELLNEYNDVDLVAALLQELVEANDEVEVQLTFEKPLSRK  442


 Score = 102 bits (255),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 10/105 (10%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M  F E+G+     Q++E M +  PT IQ +SIP  L G D+L  A+TG+GKTGAF IP+
Sbjct  1    MQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG  105
            I+ V         GK+G  ++    +   +  M   ++   F+ G
Sbjct  61   IEKVV--------GKQGVQSL--ILAPTRELAMQVAEQLREFSRG  95


>sp|Q7A4G0|CSHA_STAAN DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus aureus (strain N315) OX=158879 GN=cshA PE=1 
SV=1
Length=506

 Score = 307 bits (786),  Expect = 6e-95, Method: Composition-based stats.
 Identities = 113/530 (21%), Positives = 207/530 (39%), Gaps = 92/530 (17%)

Query  208  NGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIV  267
            N K+LG++      +++        ++   + +               +  ++   G   
Sbjct  3    NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYAL--------QGIDILGQAQTGTGKTG  54

Query  268  KSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
                 G   + +        ++LI+ P+RELA Q    +++F +      ++ + + GG+
Sbjct  55   AF---GIPLIEKVVGK-QGVQSLILAPTRELAMQVAEQLREFSR---GQGVQVVTVFGGM  107

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM  387
                Q+  L+ G  IVVGTPGR+ D ++   L    +  L+LDEAD +++ G+ D +  +
Sbjct  108  PIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFI  167

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
             ++IP V     + Q ++ SAT+    ++ L ++ M  P  +     +     +      
Sbjct  168  MDKIPAV-----QRQTMLFSATMPKA-IQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTI  221

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
            V                                          + K +     +  H+ +
Sbjct  222  VKE----------------------------------------LEKFDTFTNFLDVHQPE  241

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
             AI+F RTK   D L    I +G         +    LHGD    +R + L++FK   + 
Sbjct  242  LAIVFGRTKRRVDELTSALISKG---------YKAEGLHGDITQAKRLEVLKKFKNDQIN  292

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             L+ TDVAARG+DI GV +V N  +P + ++Y HRIGR GRA + G+A++ V   +    
Sbjct  293  ILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYI  352

Query  628  YHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGK  687
              +  + G+     R                      H    +   E DIK  V+ +  K
Sbjct  353  RQIEDANGRKMSALR--------------------PPHRKEVLQAREDDIKEKVENWMSK  392

Query  688  VTYGQKRAAGGGSYKGH--VDILAPTVQELAALEKEAQTSFLHLGYLPNQ  735
             +  + +         +  VD++A  +QEL     E +        L  +
Sbjct  393  ESESRLKRISTELLNEYNDVDLVAALLQELVEANDEVEVQLTFEKPLSRK  442


 Score = 102 bits (255),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 10/105 (10%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M  F E+G+     Q++E M +  PT IQ +SIP  L G D+L  A+TG+GKTGAF IP+
Sbjct  1    MQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG  105
            I+ V         GK+G  ++    +   +  M   ++   F+ G
Sbjct  61   IEKVV--------GKQGVQSL--ILAPTRELAMQVAEQLREFSRG  95


>sp|Q99SH6|CSHA_STAAM DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 
GN=cshA PE=1 SV=1
Length=506

 Score = 307 bits (786),  Expect = 6e-95, Method: Composition-based stats.
 Identities = 113/530 (21%), Positives = 207/530 (39%), Gaps = 92/530 (17%)

Query  208  NGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIV  267
            N K+LG++      +++        ++   + +               +  ++   G   
Sbjct  3    NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYAL--------QGIDILGQAQTGTGKTG  54

Query  268  KSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
                 G   + +        ++LI+ P+RELA Q    +++F +      ++ + + GG+
Sbjct  55   AF---GIPLIEKVVGK-QGVQSLILAPTRELAMQVAEQLREFSR---GQGVQVVTVFGGM  107

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM  387
                Q+  L+ G  IVVGTPGR+ D ++   L    +  L+LDEAD +++ G+ D +  +
Sbjct  108  PIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFI  167

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
             ++IP V     + Q ++ SAT+    ++ L ++ M  P  +     +     +      
Sbjct  168  MDKIPAV-----QRQTMLFSATMPKA-IQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTI  221

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
            V                                          + K +     +  H+ +
Sbjct  222  VKE----------------------------------------LEKFDTFTNFLDVHQPE  241

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
             AI+F RTK   D L    I +G         +    LHGD    +R + L++FK   + 
Sbjct  242  LAIVFGRTKRRVDELTSALISKG---------YKAEGLHGDITQAKRLEVLKKFKNDQIN  292

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             L+ TDVAARG+DI GV +V N  +P + ++Y HRIGR GRA + G+A++ V   +    
Sbjct  293  ILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYI  352

Query  628  YHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGK  687
              +  + G+     R                      H    +   E DIK  V+ +  K
Sbjct  353  RQIEDANGRKMSALR--------------------PPHRKEVLQAREDDIKEKVENWMSK  392

Query  688  VTYGQKRAAGGGSYKGH--VDILAPTVQELAALEKEAQTSFLHLGYLPNQ  735
             +  + +         +  VD++A  +QEL     E +        L  +
Sbjct  393  ESESRLKRISTELLNEYNDVDLVAALLQELVEANDEVEVQLTFEKPLSRK  442


 Score = 102 bits (255),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 10/105 (10%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M  F E+G+     Q++E M +  PT IQ +SIP  L G D+L  A+TG+GKTGAF IP+
Sbjct  1    MQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG  105
            I+ V         GK+G  ++    +   +  M   ++   F+ G
Sbjct  61   IEKVV--------GKQGVQSL--ILAPTRELAMQVAEQLREFSRG  95


>sp|Q5HEB9|CSHA_STAAC DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus aureus (strain COL) OX=93062 GN=cshA PE=3 
SV=1
Length=506

 Score = 307 bits (786),  Expect = 6e-95, Method: Composition-based stats.
 Identities = 113/530 (21%), Positives = 207/530 (39%), Gaps = 92/530 (17%)

Query  208  NGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIV  267
            N K+LG++      +++        ++   + +               +  ++   G   
Sbjct  3    NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYAL--------QGIDILGQAQTGTGKTG  54

Query  268  KSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
                 G   + +        ++LI+ P+RELA Q    +++F +      ++ + + GG+
Sbjct  55   AF---GIPLIEKVVGK-QGVQSLILAPTRELAMQVAEQLREFSR---GQGVQVVTVFGGM  107

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM  387
                Q+  L+ G  IVVGTPGR+ D ++   L    +  L+LDEAD +++ G+ D +  +
Sbjct  108  PIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFI  167

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
             ++IP V     + Q ++ SAT+    ++ L ++ M  P  +     +     +      
Sbjct  168  MDKIPAV-----QRQTMLFSATMPKA-IQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTI  221

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
            V                                          + K +     +  H+ +
Sbjct  222  VKE----------------------------------------LEKFDTFTNFLDVHQPE  241

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
             AI+F RTK   D L    I +G         +    LHGD    +R + L++FK   + 
Sbjct  242  LAIVFGRTKRRVDELTSALISKG---------YKAEGLHGDITQAKRLEVLKKFKNDQIN  292

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             L+ TDVAARG+DI GV +V N  +P + ++Y HRIGR GRA + G+A++ V   +    
Sbjct  293  ILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYI  352

Query  628  YHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGK  687
              +  + G+     R                      H    +   E DIK  V+ +  K
Sbjct  353  RQIEDANGRKMSALR--------------------PPHRKEVLQAREDDIKEKVENWMSK  392

Query  688  VTYGQKRAAGGGSYKGH--VDILAPTVQELAALEKEAQTSFLHLGYLPNQ  735
             +  + +         +  VD++A  +QEL     E +        L  +
Sbjct  393  ESESRLKRISTELLNEYNDVDLVAALLQELVEANDEVEVQLTFEKPLSRK  442


 Score = 102 bits (255),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 10/105 (10%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M  F E+G+     Q++E M +  PT IQ +SIP  L G D+L  A+TG+GKTGAF IP+
Sbjct  1    MQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG  105
            I+ V         GK+G  ++    +   +  M   ++   F+ G
Sbjct  61   IEKVV--------GKQGVQSL--ILAPTRELAMQVAEQLREFSRG  95


>sp|Q2FWH5|CSHA_STAA8 DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus aureus (strain NCTC 8325 / PS 47) OX=93061 
GN=cshA PE=1 SV=1
Length=506

 Score = 307 bits (786),  Expect = 6e-95, Method: Composition-based stats.
 Identities = 113/530 (21%), Positives = 207/530 (39%), Gaps = 92/530 (17%)

Query  208  NGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIV  267
            N K+LG++      +++        ++   + +               +  ++   G   
Sbjct  3    NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYAL--------QGIDILGQAQTGTGKTG  54

Query  268  KSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
                 G   + +        ++LI+ P+RELA Q    +++F +      ++ + + GG+
Sbjct  55   AF---GIPLIEKVVGK-QGVQSLILAPTRELAMQVAEQLREFSR---GQGVQVVTVFGGM  107

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM  387
                Q+  L+ G  IVVGTPGR+ D ++   L    +  L+LDEAD +++ G+ D +  +
Sbjct  108  PIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFI  167

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
             ++IP V     + Q ++ SAT+    ++ L ++ M  P  +     +     +      
Sbjct  168  MDKIPAV-----QRQTMLFSATMPKA-IQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTI  221

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
            V                                          + K +     +  H+ +
Sbjct  222  VKE----------------------------------------LEKFDTFTNFLDVHQPE  241

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
             AI+F RTK   D L    I +G         +    LHGD    +R + L++FK   + 
Sbjct  242  LAIVFGRTKRRVDELTSALISKG---------YKAEGLHGDITQAKRLEVLKKFKNDQIN  292

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             L+ TDVAARG+DI GV +V N  +P + ++Y HRIGR GRA + G+A++ V   +    
Sbjct  293  ILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYI  352

Query  628  YHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGK  687
              +  + G+     R                      H    +   E DIK  V+ +  K
Sbjct  353  RQIEDANGRKMSALR--------------------PPHRKEVLQAREDDIKEKVENWMSK  392

Query  688  VTYGQKRAAGGGSYKGH--VDILAPTVQELAALEKEAQTSFLHLGYLPNQ  735
             +  + +         +  VD++A  +QEL     E +        L  +
Sbjct  393  ESESRLKRISTELLNEYNDVDLVAALLQELVEANDEVEVQLTFEKPLSRK  442


 Score = 102 bits (255),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 10/105 (10%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M  F E+G+     Q++E M +  PT IQ +SIP  L G D+L  A+TG+GKTGAF IP+
Sbjct  1    MQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG  105
            I+ V         GK+G  ++    +   +  M   ++   F+ G
Sbjct  61   IEKVV--------GKQGVQSL--ILAPTRELAMQVAEQLREFSRG  95


>sp|Q2FF45|CSHA_STAA3 DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus aureus (strain USA300) OX=367830 GN=cshA 
PE=3 SV=1
Length=506

 Score = 307 bits (786),  Expect = 6e-95, Method: Composition-based stats.
 Identities = 113/530 (21%), Positives = 207/530 (39%), Gaps = 92/530 (17%)

Query  208  NGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIV  267
            N K+LG++      +++        ++   + +               +  ++   G   
Sbjct  3    NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYAL--------QGIDILGQAQTGTGKTG  54

Query  268  KSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
                 G   + +        ++LI+ P+RELA Q    +++F +      ++ + + GG+
Sbjct  55   AF---GIPLIEKVVGK-QGVQSLILAPTRELAMQVAEQLREFSR---GQGVQVVTVFGGM  107

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM  387
                Q+  L+ G  IVVGTPGR+ D ++   L    +  L+LDEAD +++ G+ D +  +
Sbjct  108  PIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFI  167

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
             ++IP V     + Q ++ SAT+    ++ L ++ M  P  +     +     +      
Sbjct  168  MDKIPAV-----QRQTMLFSATMPKA-IQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTI  221

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
            V                                          + K +     +  H+ +
Sbjct  222  VKE----------------------------------------LEKFDTFTNFLDVHQPE  241

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
             AI+F RTK   D L    I +G         +    LHGD    +R + L++FK   + 
Sbjct  242  LAIVFGRTKRRVDELTSALISKG---------YKAEGLHGDITQAKRLEVLKKFKNDQIN  292

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             L+ TDVAARG+DI GV +V N  +P + ++Y HRIGR GRA + G+A++ V   +    
Sbjct  293  ILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYI  352

Query  628  YHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGK  687
              +  + G+     R                      H    +   E DIK  V+ +  K
Sbjct  353  RQIEDANGRKMSALR--------------------PPHRKEVLQAREDDIKEKVENWMSK  392

Query  688  VTYGQKRAAGGGSYKGH--VDILAPTVQELAALEKEAQTSFLHLGYLPNQ  735
             +  + +         +  VD++A  +QEL     E +        L  +
Sbjct  393  ESESRLKRISTELLNEYNDVDLVAALLQELVEANDEVEVQLTFEKPLSRK  442


 Score = 102 bits (255),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 10/105 (10%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M  F E+G+     Q++E M +  PT IQ +SIP  L G D+L  A+TG+GKTGAF IP+
Sbjct  1    MQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG  105
            I+ V         GK+G  ++    +   +  M   ++   F+ G
Sbjct  61   IEKVV--------GKQGVQSL--ILAPTRELAMQVAEQLREFSRG  95


>sp|Q9VIF6|DDX47_DROME ATP-dependent RNA helicase DDX47 OS=Drosophila 
melanogaster OX=7227 GN=pths PE=1 SV=1
Length=507

 Score = 307 bits (786),  Expect = 7e-95, Method: Composition-based stats.
 Identities = 105/478 (22%), Positives = 178/478 (37%), Gaps = 76/478 (16%)

Query  235  NAELKFNFGEEEFKFPPKDGFVALSKAPDGYI---VKSQHSGNAQVTQTKFL------PN  285
            N  L     E ++K P K    A+  A  G     +    SG         L      P 
Sbjct  69   NEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQ  128

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
               AL++ P+RELA Q     +          ++  +++GG+    Q   L     I++ 
Sbjct  129  RYFALVLTPTRELAFQIGEQFEALG---SGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIA  185

Query  346  TPGRLDDLVST-GKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            TPGRL D +      NL  +++LV+DEAD +L+  +   ++++   +P      +  +  
Sbjct  186  TPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLP------RERRTF  239

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT+    VKKL    +  P  V++  +    + +    + +  K             
Sbjct  240  LFSATMTK-KVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVK-------------  285

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                                        K  Y V  + E   +  +IFC T  +      
Sbjct  286  ---------------------------YKDVYLVHILNELAGNSFMIFCSTCNNTVKTAL  318

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
                 G          + + LHG    ++R   L +FK  +   LI TDVA+RG+DI  V
Sbjct  319  MLRALG---------LAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHV  369

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLK  644
              V+N  +P   ++Y+HR+GR  RA R G AI+LV+    +++  +    GK     + +
Sbjct  370  DVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEHLLGKQLTLYKCE  429

Query  645  EDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYK  702
            ED         M L   + E       +++           G  T+       G   +
Sbjct  430  ED-------EVMALQERVAEAQRTAKLELKDLEDTRGGHKRGGDTHDDSENFTGARKR  480


 Score = 105 bits (261),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 53/109 (49%), Gaps = 9/109 (8%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             + ++G+   + QA +E+ W  P+ IQ E+IP+ L G DV+  AETGSGKTGAF++P++ 
Sbjct  62   TWKDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILH  121

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
             + E           +       +   +      ++  A   G    CC
Sbjct  122  ALLEN---------PQRYFALVLTPTRELAFQIGEQFEALGSGIGIKCC  161


>sp|Q8K9H6|DEAD_BUCAP ATP-dependent RNA helicase DeaD OS=Buchnera 
aphidicola subsp. Schizaphis graminum (strain Sg) OX=198804 
GN=deaD PE=3 SV=1
Length=601

 Score = 310 bits (793),  Expect = 8e-95, Method: Composition-based stats.
 Identities = 113/469 (24%), Positives = 186/469 (40%), Gaps = 77/469 (16%)

Query  200  KGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALS  259
            +    F      LGL   I   +          ++ A +                 + ++
Sbjct  5    ESTFSF------LGLNPFIIKSLSKMGYVKPSPIQAACIPLLL--------EGRDVLGMA  50

Query  260  KAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLR  319
            +   G            +        AP+ L++ P+RELA Q       F KYI    + 
Sbjct  51   QTGSGKTAAFSL---PLLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKYI--MGIH  105

Query  320  ELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQG  379
             L + GG     QL  L  G  IVVGTPGRL D +  G LNLS +  LVLDEAD +L  G
Sbjct  106  VLPLYGGQRYEVQLRALRQGPQIVVGTPGRLLDHLKRGTLNLSNLYALVLDEADEMLRMG  165

Query  380  YSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPD  439
            + + +  + +QIP      K  Q  + SAT+    ++++S++ M  P  + ++   +   
Sbjct  166  FIEDVETIMSQIP------KEHQTALFSATMPEA-IRRISKRFMKNPQEIKIQSNITTRP  218

Query  440  TVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVR  499
             +      V  +                                         K +  +R
Sbjct  219  DIKQSYWMVYGR-----------------------------------------KTDALIR  237

Query  500  AIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLE  559
             ++       IIF +TK     + +   + G         ++   L+GD     R+Q LE
Sbjct  238  FLEVEDFSATIIFVKTKNATLEVSEALERNG---------YNSAALNGDMNQALREQTLE  288

Query  560  RFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            R K G +  LI TDVAARG+D+  + +VIN  +P + ++YVHRIGR GRA R G A+  V
Sbjct  289  RLKSGRLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFV  348

Query  620  ATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNC  668
               + ++  ++  +  +     +L +         E +   +++E L  
Sbjct  349  ENRERRLLRNIERTINQTIPEVQLPKIEVLCKRRLE-RFAKKVQEQLES  396


 Score = 109 bits (273),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 35/108 (32%), Positives = 57/108 (53%), Gaps = 9/108 (8%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + FS +G+ P I +++ +M ++ P+ IQA  IPL+L G DVL  A+TGSGKT AFS+P++
Sbjct  6    STFSFLGLNPFIIKSLSKMGYVKPSPIQAACIPLLLEGRDVLGMAQTGSGKTAAFSLPLL  65

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGL  109
              +   LK  Q             +   +  +   +  S F+    G+
Sbjct  66   HNLNINLKAPQ---------ILVLAPTRELAVQVAEAFSDFSKYIMGI  104


>sp|Q6GEZ3|CSHA_STAAR DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=cshA 
PE=3 SV=1
Length=506

 Score = 307 bits (785),  Expect = 9e-95, Method: Composition-based stats.
 Identities = 101/474 (21%), Positives = 190/474 (40%), Gaps = 71/474 (15%)

Query  208  NGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIV  267
            N K+LG++      +++        ++   + +               +  ++   G   
Sbjct  3    NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYAL--------QGIDILGQAQTGTGKTG  54

Query  268  KSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
                 G   + +        ++LI+ P+RELA Q    +++F +      ++ + + GG+
Sbjct  55   AF---GIPLIEKVVGK-QGVQSLILAPTRELAMQVAEQLREFSR---GQGVQVVTVFGGM  107

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM  387
                Q+  L+ G  IVVGTPGR+ D ++   L    +  L+LDEAD +++ G+ D +  +
Sbjct  108  PIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFI  167

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
             ++IP V     + Q ++ SAT+    ++ L ++ M  P  +     +     +      
Sbjct  168  MDKIPAV-----QRQTMLFSATMPKA-IQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTI  221

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
            V                                          + K +     +  H+ +
Sbjct  222  VKE----------------------------------------LEKFDTFTNFLDVHQPE  241

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
             AI+F RTK   D L    I +G         +    LHGD    +R + L++FK   + 
Sbjct  242  LAIVFGRTKRRVDELTSALISKG---------YKAEGLHGDITQAKRLEVLKKFKNDQIN  292

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             L+ TDVAARG+DI GV +V N  +P + ++Y HRIGR GRA + G+A++ V   +    
Sbjct  293  ILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYI  352

Query  628  YHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPV  681
              +  + G+     R        +   E  +  ++E  ++         I   +
Sbjct  353  RQIEDANGRKMSALR-PPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTEL  405


 Score = 102 bits (255),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 10/105 (10%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M  F E+G+     Q++E M +  PT IQ +SIP  L G D+L  A+TG+GKTGAF IP+
Sbjct  1    MQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG  105
            I+ V         GK+G  ++    +   +  M   ++   F+ G
Sbjct  61   IEKVV--------GKQGVQSL--ILAPTRELAMQVAEQLREFSRG  95


>sp|Q6CB69|DED1_YARLI ATP-dependent RNA helicase DED1 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DED1 PE=3 
SV=1
Length=618

 Score = 310 bits (794),  Expect = 9e-95, Method: Composition-based stats.
 Identities = 88/350 (25%), Positives = 144/350 (41%), Gaps = 55/350 (16%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P AL++ P+REL  Q  +  K+F        +R  ++ GG    +Q+  +E G D++V  
Sbjct  245  PTALVLAPTRELVSQIYDEAKKFA---YRSWVRPCVVYGGADIGEQMRNIERGCDLLVAA  301

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL DL+  GK++L  +++LVLDEAD +L  G+   I  +         D    Q ++ 
Sbjct  302  PGRLVDLIDRGKVSLENIKYLVLDEADRMLDMGFEPQIRAIVQG--SGMPDVNERQTLMF  359

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT    +++ L+   +    ++ +    S  + +   V  V                  
Sbjct  360  SATFP-RNIQMLARDFLKDYIFLSVGRVGSTSENITQKVEYVEDGD--------------  404

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                                      K    +  +        ++F  TK   D L    
Sbjct  405  --------------------------KISALLDILSAAGKGLTLVFVETKRGADYLCDVL  438

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                     +   F    +HGDR   +R++ LE F+ G    L+ T VAARG+DI  V +
Sbjct  439  ---------QSEDFPATSIHGDRSQRDRERALEMFRDGTTPILVATAVAARGLDIPNVTH  489

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGK  636
            V+N  LP +  +YVHRIGR GRA   G+A +      + +   +     +
Sbjct  490  VVNYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNKGIVRELIDILKE  539


 Score = 98.7 bits (244),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 44/113 (39%), Gaps = 7/113 (6%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + AF+   +   +   ++   +  PT +Q  S+P++  G D++  A+TGSGKTG F  PV
Sbjct  159  INAFTSPPLEEHLLTNIKLARYNKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPV  218

Query  61   IQIVYETLKDQQEGKKGKT-------TIKTGASVLNKWQMNPYDRGSAFAIGS  106
            +   +           G               +   +     YD    FA  S
Sbjct  219  LSQSFFHGPSPTPQPTGPRHMHKKAYPTALVLAPTRELVSQIYDEAKKFAYRS  271


>sp|Q4IFI0|RRP3_GIBZE ATP-dependent rRNA helicase RRP3 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=RRP3 PE=3 SV=1
Length=486

 Score = 305 bits (782),  Expect = 1e-94, Method: Composition-based stats.
 Identities = 105/461 (23%), Positives = 171/461 (37%), Gaps = 74/461 (16%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K  KDLG+   +    +         ++   +                 + L++   G  
Sbjct  60   KTFKDLGVNDALCEACEKLNYKYPTPIQEKSIPVAL--------QGRDIIGLAETGSGKT  111

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
                      +      P     L++ P+RELA Q     +     I    LR  +I+GG
Sbjct  112  AAFAL---PVLQALLDKPQPLFGLVLAPTRELATQIGQAFEALGSLIS---LRCAVIVGG  165

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVS-TGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            +    Q   L     IVV TPGRL D +  T   +L  +++L++DEAD LL   +   I+
Sbjct  166  LDMVPQAIALGKKPHIVVATPGRLVDHLEKTKGFSLRTLKYLIMDEADRLLDMDFGPSID  225

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED-SVPDTVHHV  444
            ++   +P      +  +  + SAT+ S  ++ L    +  P  V +         T+   
Sbjct  226  KILKFVP------RERRTYLFSATI-SSKIESLQRASLRDPVKVSISSNKYQTVSTLLQN  278

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
             + +                                            K  + +  I EH
Sbjct  279  YLFIPHPQ----------------------------------------KDVHLIYLINEH  298

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
                 I+F RT  +   +       G         F  + LHG      R   L +F+ G
Sbjct  299  AGQSTIVFTRTVWETQRVSILLRTLG---------FGAIPLHGQLSQSSRLGALNKFRSG  349

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
                L+ TDVAARG+DI  V  V+N  LP + + Y+HR+GR  RA + G+AISLV     
Sbjct  350  TRDILVATDVAARGLDIPSVDVVLNYDLPQDSKTYIHRVGRTARAGKSGVAISLVTQYDL  409

Query  625  KVWYHVCSSRGKGC--YNTRLKEDGGCTIWYNEMQLLSEIE  663
            +++  + ++ GK    Y T  +E         E Q ++ IE
Sbjct  410  EIYLRIEAALGKKLAEYPTEKEEVMAFQSRVEEAQRIARIE  450


 Score = 102 bits (253),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 28/67 (42%), Positives = 45/67 (67%), Gaps = 0/67 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F ++GV   + +A E++++  PT IQ +SIP+ L G D++  AETGSGKT AF++PV+
Sbjct  60   KTFKDLGVNDALCEACEKLNYKYPTPIQEKSIPVALQGRDIIGLAETGSGKTAAFALPVL  119

Query  62   QIVYETL  68
            Q + +  
Sbjct  120  QALLDKP  126


>sp|Q84UQ1|RH42_ORYSJ DEAD-box ATP-dependent RNA helicase 42 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os08g0159900 PE=2 
SV=1
Length=1049

 Score = 320 bits (819),  Expect = 1e-94, Method: Composition-based stats.
 Identities = 119/500 (24%), Positives = 196/500 (39%), Gaps = 113/500 (23%)

Query  210  KDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKS  269
               GL  ++   +K         ++   L                 + ++K   G  +  
Sbjct  427  VQSGLTSKLLDTIKKLGFEKPMSIQAQALPIIMS--------GRDCIGIAKTGSGKTLAF  478

Query  270  QHSGNAQVTQTKFLP-----NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
                   +   K  P     + P  LI+ P+REL  Q  ++IK+F K +    +  + I 
Sbjct  479  VL---PMLRHVKDQPAVVPGDGPIGLIMAPTRELVVQIHSDIKKFSKALG---INCVAIY  532

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLV---STGKLNLSQVRFLVLDEADGLLSQGYS  381
            GG     Q+S L+ G +IVV TPGR+ D++   S    NL +V FLV+DEAD +   G+ 
Sbjct  533  GGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFE  592

Query  382  DFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV  441
              I R+        +     Q ++ SAT     V+ L+ K++  P  + + G   V   +
Sbjct  593  PQITRIVQ------NTRPDRQTVLFSATFP-RQVEILARKVLTKPVEIQVGGRSVVNKDI  645

Query  442  HHVVV--PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVR  499
              +V   P N +  RL E LG+   +                                  
Sbjct  646  TQLVEVRPENERFFRLLELLGEWFDK----------------------------------  671

Query  500  AIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLE  559
                    + ++F  ++  CD+L +   Q G         + C+ LHG +   +R+  L 
Sbjct  672  -------GKILVFVHSQDKCDSLLKDLFQHG---------YPCLSLHGGKDQTDRESTLA  715

Query  560  RFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
             FK      LI T VAARG+D+  +  V+N  +P+  ++YVHR+GR GRA R G A++ +
Sbjct  716  DFKSNVCSLLIATSVAARGLDVKELELVVNYDVPNHYEDYVHRVGRTGRAGRKGFAVTFI  775

Query  620  ATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKV  679
            + E+E+    +  +                                L  +   V  D+K 
Sbjct  776  SEEEERYAPDLVKA--------------------------------LELSEQAVPEDLKG  803

Query  680  PVDEFDGKVTYGQKRAAGGG  699
              D F  KV  G ++A G G
Sbjct  804  LADRFMAKVKQGTEQAHGTG  823


 Score = 112 bits (280),  Expect = 4e-24, Method: Composition-based stats.
 Identities = 35/154 (23%), Positives = 66/154 (43%), Gaps = 20/154 (13%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  + + G+  ++   ++++ +  P  IQA+++P+I+ G D +  A+TGSGKT AF +P+
Sbjct  423  IKTWVQSGLTSKLLDTIKKLGFEKPMSIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPM  482

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI----------GSDGLC  110
            ++ V    KDQ     G   I    +   +  +  +     F+           G  G+ 
Sbjct  483  LRHV----KDQPAVVPGDGPIGLIMAPTRELVVQIHSDIKKFSKALGINCVAIYGGSGVA  538

Query  111  CQSREVKE-WHGCRATKGLMKGKHYYEVSCHDQG  143
             Q  E+K        T G        ++ C   G
Sbjct  539  QQISELKRGAEIVVCTPGR-----MIDILCTSSG  567


>sp|Q4WX43|IF4A_ASPFU ATP-dependent RNA helicase eIF4A OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC 
A1100 / Af293) OX=330879 GN=tif1 PE=3 SV=1
Length=406

 Score = 302 bits (774),  Expect = 2e-94, Method: Composition-based stats.
 Identities = 110/426 (26%), Positives = 186/426 (44%), Gaps = 71/426 (17%)

Query  228  FPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN------AQVTQ  279
            F A  LK   L+  + +G E      +   + + K  D        +G       + + +
Sbjct  27   FDAMDLKPELLRGVYAYGFERPSAIQQRAILPIIKGNDVIAQAQSGTGKTATFSISALQK  86

Query  280  TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
                    +ALI+ P+RELA+Q    +     +++   +     IGG   R+ +  L+ G
Sbjct  87   LDPNVKGCQALILAPTRELAQQIQKVVVAIGDFMN---IECHACIGGTNVREDMKALQEG  143

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
              +VVGTPGR+ D++    L    ++  +LDEAD +LS+G+++ I  +   +PQ T    
Sbjct  144  PQVVVGTPGRVQDMIQRRVLRTDNLKMFILDEADEMLSRGFTEQIYDIFQLLPQST----  199

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              QV++ SAT+   DV +++ K M  P  + +K ++   + +    + V  +  +L    
Sbjct  200  --QVVLLSATMP-QDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKL----  252

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
                                            L   Y    I      QA+IFC T+   
Sbjct  253  ------------------------------DTLSDLYETVTIT-----QAVIFCNTRRKV  277

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            D L                 F+   +HGD +  +R   ++ F+ G  R LI TD+ ARGI
Sbjct  278  DWLTDKLT---------ARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGI  328

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCY  639
            D+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V  +  ++   +     +  Y
Sbjct  329  DVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREI-----EQFY  383

Query  640  NTRLKE  645
            +T+++E
Sbjct  384  STQIEE  389


 Score = 91.3 bits (225),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 40/77 (52%), Gaps = 0/77 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F  M + PE+ + V    +  P+ IQ  +I  I+ G DV+  A++G+GKT  FSI  +Q
Sbjct  26   SFDAMDLKPELLRGVYAYGFERPSAIQQRAILPIIKGNDVIAQAQSGTGKTATFSISALQ  85

Query  63   IVYETLKDQQEGKKGKT  79
             +   +K  Q      T
Sbjct  86   KLDPNVKGCQALILAPT  102


>sp|Q49Z29|CSHA_STAS1 DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus saprophyticus subsp. saprophyticus (strain 
ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 
GN=cshA PE=3 SV=1
Length=506

 Score = 305 bits (782),  Expect = 2e-94, Method: Composition-based stats.
 Identities = 100/435 (23%), Positives = 181/435 (42%), Gaps = 70/435 (16%)

Query  208  NGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIV  267
            N K+LG++ ++   +++     A  ++   +                 +  ++   G   
Sbjct  3    NFKELGISDKMAETLQSMGFNEATPIQKESIPLAL--------EGKDVLGQAQTGTGKTG  54

Query  268  KSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
                     + +        ++LI+ P+RELA Q   ++K F K      ++ + + GG+
Sbjct  55   AF----GIPLIEKVADQEGVQSLILAPTRELAMQVAESLKAFAK---GQNIQVVTVFGGM  107

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM  387
                Q+  L+ G  IVVGTPGR+ D ++   L  + +  L+LDEAD +++ G+ D +  +
Sbjct  108  PIDRQIKALKKGPQIVVGTPGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMKFI  167

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
             ++IP      ++ Q ++ SAT+    ++ L ++ M  P  V     +     +      
Sbjct  168  MDKIP-----AEQRQTMLFSATMPKA-IQTLVQQFMKSPVIVKTMNNEMSDPQIEEYYTI  221

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
            V                                          + K +     +  H+ +
Sbjct  222  VKE----------------------------------------LEKFDTFTSFLDVHQPE  241

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
             AI+F RTK   D L    I +G         +    LHGD    +R + L++FK   + 
Sbjct  242  LAIVFGRTKRRVDELTSALISKG---------YKAEGLHGDITQAKRLEVLKKFKNDQLD  292

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             L+ TDVAARG+DI GV +V N  +P + ++Y HRIGR GRA + G+AI+ V   +    
Sbjct  293  ILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKKGVAITFVNPIEMDYI  352

Query  628  YHVCSSRGKGCYNTR  642
              +  +  +     R
Sbjct  353  RQIEQANKRQMTALR  367


 Score = 100 bits (250),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 40/107 (37%), Positives = 58/107 (54%), Gaps = 10/107 (9%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M  F E+G+  ++A+ ++ M +   T IQ ESIPL L G DVL  A+TG+GKTGAF IP+
Sbjct  1    MQNFKELGISDKMAETLQSMGFNEATPIQKESIPLALEGKDVLGQAQTGTGKTGAFGIPL  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            I+ V +     QEG +         +   +  M   +   AFA G +
Sbjct  61   IEKVAD-----QEGVQ-----SLILAPTRELAMQVAESLKAFAKGQN  97


>sp|P19109|DDX17_DROME ATP-dependent RNA helicase p62 OS=Drosophila 
melanogaster OX=7227 GN=Rm62 PE=1 SV=3
Length=719

 Score = 312 bits (799),  Expect = 2e-94, Method: Composition-based stats.
 Identities = 103/426 (24%), Positives = 165/426 (39%), Gaps = 65/426 (15%)

Query  218  IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQV  277
            +   ++ Q       ++            F        V ++K   G  +         +
Sbjct  292  VMKEIRRQGYKAPTAIQAQGWPIAMSGSNF--------VGIAKTGSGKTLGYILPAIVHI  343

Query  278  TQTKFLP--NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
               + L   + P AL++ P+RELA+Q      +F     +  +R   + GG     Q+  
Sbjct  344  NNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFG---SSSYVRNTCVFGGAPKGGQMRD  400

Query  336  LENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
            L+ G +IV+ TPGRL D +S G  NL +  +LVLDEAD +L  G+   I ++ +QI    
Sbjct  401  LQRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQI----  456

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG-EDSVPDTVHHVVVPVNPKTDR  454
                  Q ++ SAT    +VK+L+E  +     +++   E S    +  VV   +     
Sbjct  457  --RPDRQTLMWSATWPK-EVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDE----  509

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
                                               + LK   +          + IIF  
Sbjct  510  -------------------------------FSKEEKLKTLLSDIYDTSESPGKIIIFVE  538

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
            TK   DNL ++    G           C  +HGD+   ER   L  F+ G    L+ TDV
Sbjct  539  TKRRVDNLVRFIRSFG---------VRCGAIHGDKSQSERDFVLREFRSGKSNILVATDV  589

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            AARG+D+ G+ YVIN   P   ++Y+HRIGR GR+   G + +       K    +    
Sbjct  590  AARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKALVDVL  649

Query  635  GKGCYN  640
             +    
Sbjct  650  REANQE  655


 Score = 95.2 bits (235),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 55/374 (15%), Positives = 121/374 (32%), Gaps = 56/374 (15%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  FSE+ +   + + +    +  PT IQA+  P+ + G + +  A+TGSGKT  + +P 
Sbjct  280  IQDFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPA  339

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS--DGLCCQSREVKE  118
            I  +     +QQ  ++G   I    +   +         + F   S     C      K 
Sbjct  340  IVHI----NNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKG  395

Query  119  WHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQ  178
                   +G        E+     G      S    +L   T    +       +  +  
Sbjct  396  GQMRDLQRGC-------EIVIATPGRLIDFLSAGSTNLKRCT----YLVLDEADRMLDMG  444

Query  179  FDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAEL  238
            F+    +          +  D+  + +S          ++         +    + + EL
Sbjct  445  FEPQIRKIVSQ------IRPDRQTLMWS--ATWPKEVKQLAEDFLGN--YIQINIGSLEL  494

Query  239  KFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSREL  298
              N              V +           +      ++       +P  +I+      
Sbjct  495  SANHN--------IRQVVDVCDE-----FSKEEKLKTLLSDIYDTSESPGKIIIF-----  536

Query  299  AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGTPGRLDDLV  354
              +T   +    ++I +  +R   I G  +  ++  VL        +I+V T     D+ 
Sbjct  537  -VETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVAT-----DVA  590

Query  355  STGKLNLSQVRFLV  368
            + G L++  +++++
Sbjct  591  ARG-LDVDGIKYVI  603


>sp|Q7RV88|IF4A_NEUCR ATP-dependent RNA helicase eIF4A OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=tif-1 PE=3 SV=2
Length=397

 Score = 302 bits (773),  Expect = 2e-94, Method: Composition-based stats.
 Identities = 112/428 (26%), Positives = 188/428 (44%), Gaps = 75/428 (18%)

Query  228  FPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQ--------V  277
            F    LK   L+  + +G E      +   + + K     ++    SG  +        +
Sbjct  26   FDEMNLKPELLRGIYAYGFERPSAIQQRAIMPVIKG--HDVIAQAQSGTGKTATFSISVL  83

Query  278  TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE  337
             +      A +ALI+ P+RELA+Q    +     +++   +     IGG + RD +  L+
Sbjct  84   QKIDPSLKACQALILAPTRELAQQIQKVVVAIGDFMN---IECHACIGGTSVRDDMKALQ  140

Query  338  NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD  397
            +G  +VVGTPGR+ D++    L    ++  VLDEAD +LS+G+++ I  +   +PQ T  
Sbjct  141  DGPQVVVGTPGRVHDMIQRRFLKTDSMKMFVLDEADEMLSRGFTEQIYDIFQLLPQST--  198

Query  398  GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWE  457
                QV++ SAT+   DV +++ K M  P  + +K ++   + +    + V  +  +L  
Sbjct  199  ----QVVLLSATMP-QDVLEVTTKFMREPVRILVKKDELTLEGIKQFYIAVEKEEWKL--  251

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
                                              L   Y    I      QA+IFC T+ 
Sbjct  252  --------------------------------DTLSDLYETVTIT-----QAVIFCNTRR  274

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
              D L                 F+   +HGD    +R   ++ F+ G  R LI TD+ AR
Sbjct  275  KVDWLTDKLT---------ARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLAR  325

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
            GID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V  +  ++   +     + 
Sbjct  326  GIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREI-----EQ  380

Query  638  CYNTRLKE  645
             Y+T+++E
Sbjct  381  FYSTQIEE  388


 Score = 100 bits (248),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 26/79 (33%), Positives = 44/79 (56%), Gaps = 0/79 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F EM + PE+ + +    +  P+ IQ  +I  ++ G DV+  A++G+GKT  FSI V
Sbjct  23   VDSFDEMNLKPELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISV  82

Query  61   IQIVYETLKDQQEGKKGKT  79
            +Q +  +LK  Q      T
Sbjct  83   LQKIDPSLKACQALILAPT  101


>sp|B4F1V3|RHLB_PROMH ATP-dependent RNA helicase RhlB OS=Proteus 
mirabilis (strain HI4320) OX=529507 GN=rhlB PE=3 SV=1
Length=432

 Score = 303 bits (776),  Expect = 2e-94, Method: Composition-based stats.
 Identities = 111/407 (27%), Positives = 177/407 (43%), Gaps = 63/407 (15%)

Query  257  ALSKAPDGYIVKSQHSGNAQVTQTKFL----PNAPKALIVEPSRELAEQTLNNIKQFKKY  312
              ++   G  +    S    +           N P+ALI+ P+RELA Q   + +   + 
Sbjct  51   GQAQTGTGKTLAFLTSTFHYLLTHPAKEGHEKNQPRALIMAPTRELAVQIYTDAQPLAQ-  109

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
              +  ++  L  GG    +QL VL NGVDIV+GT GRL D V  G +NL+ ++ +VLDEA
Sbjct  110  --STGVKMGLAYGGDGYDEQLKVLNNGVDIVIGTTGRLIDYVKQGHINLNAIQVVVLDEA  167

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D +   G+   I  +  ++P           ++ SATL S+ V++L+ + M+ P +V+++
Sbjct  168  DRMYDLGFIKDIRWLFRRMPNAA----ERMNMLFSATL-SYRVRELAFEQMNNPEYVEVE  222

Query  433  GEDSVPDTVH-HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
             E     ++   +  P N +  RL + L                                
Sbjct  223  PEQKTGFSIKEELFYPSNEEKMRLLQTL--------------------------------  250

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
                     I+E   ++ IIF  TK  CD++  +    G              L GD   
Sbjct  251  ---------IEEEWPERCIIFANTKHRCDDIWAHLAADG---------HRVGLLTGDVPQ  292

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
             +R + LE F +G++  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA +
Sbjct  293  KKRLRILEDFTQGNIDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGK  352

Query  612  MGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
             G +ISL   E       + +        ++   D   T      + 
Sbjct  353  SGNSISLACEEYALNLPAIETYIQHAIPVSKYNSDALLTDLPEPKRR  399


 Score = 97.9 bits (242),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 57/358 (16%), Positives = 121/358 (34%), Gaps = 66/358 (18%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              FS+  + P++ +A+E+  +   T IQA ++P+ + G D+   A+TG+GKT AF     
Sbjct  9    KKFSDFALHPKVIEALEKKGFSNCTQIQALTLPITVKGHDIAGQAQTGTGKTLAFLTSTF  68

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHG  121
              +        EG +         +   +  +  Y                ++ + +  G
Sbjct  69   HYLLTHPAK--EGHEKNQPRALIMAPTRELAVQIYT--------------DAQPLAQSTG  112

Query  122  CRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDN  181
             +         +  ++   + G+           + +GT      +   G  + N     
Sbjct  113  VKMGLAYGGDGYDEQLKVLNNGV----------DIVIGTTGRLIDYVKQGHINLNA----  158

Query  182  YGEEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFEIPPHMKNQ--ALFPACVLKNAEL  238
                      I   + +D+    +     KD+   F   P+   +   LF A  L     
Sbjct  159  ----------IQVVV-LDEADRMYDLGFIKDIRWLFRRMPNAAERMNMLFSAT-LSYRVR  206

Query  239  KFNFGEEEFKFPPKDGFVALSKAPDGYIVK-----SQHSGNAQVTQTKFLPNAP-KALIV  292
            +  F +       +       +   G+ +K       +    ++ QT      P + +I 
Sbjct  207  ELAFEQMNNPEYVEVEP----EQKTGFSIKEELFYPSNEEKMRLLQTLIEEEWPERCIIF  262

Query  293  EPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
              ++       +       ++     R  L+ G V  + +L +LE+     +DI+V T
Sbjct  263  ANTK-------HRCDDIWAHLAADGHRVGLLTGDVPQKKRLRILEDFTQGNIDILVAT  313


>sp|A7EGL7|IF4A_SCLS1 ATP-dependent RNA helicase eIF4A OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=tif1 PE=3 SV=1
Length=398

 Score = 302 bits (772),  Expect = 3e-94, Method: Composition-based stats.
 Identities = 112/428 (26%), Positives = 186/428 (43%), Gaps = 75/428 (18%)

Query  228  FPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQ--------V  277
            F    LK   L+  + +G E      +   + + K     ++    SG  +        +
Sbjct  27   FDTMNLKPELLRGVYAYGFERPSAIQQRAIMPVIKG--HDVIAQAQSGTGKTATFSISVL  84

Query  278  TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE  337
             +        +ALI+ P+RELA+Q    +     +++   +     IGG + RD +  L+
Sbjct  85   QKLDPNVKQCQALILAPTRELAQQIQKVVVAIGDFMN---VECHACIGGTSVRDDMKALQ  141

Query  338  NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD  397
            +G  +VVGTPGR+ D++    L    ++  VLDEAD +LS+G+++ I  +   +PQ T  
Sbjct  142  DGPQVVVGTPGRVHDMIQRRFLKTDSMKMFVLDEADEMLSRGFTEQIYDIFQLLPQST--  199

Query  398  GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWE  457
                QV++ SAT+   DV +++ K M  P  + +K  +   + +    + V  +  +L  
Sbjct  200  ----QVVLLSATMP-QDVLEVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKEDWKL--  252

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
                                              L   Y    I      QA+IFC T+ 
Sbjct  253  --------------------------------DTLSDLYETVTIT-----QAVIFCNTRR  275

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
              D L                 F+   +HGD    +R   ++ F+ G  R LI TD+ AR
Sbjct  276  KVDWLTDKLT---------ARDFTVSAMHGDMDQGQRDLIMKEFRSGSSRVLIATDLLAR  326

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
            GID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V  E  ++   +     + 
Sbjct  327  GIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTAEDVRMMREI-----EQ  381

Query  638  CYNTRLKE  645
             Y+T+++E
Sbjct  382  FYSTQIEE  389


 Score = 95.6 bits (236),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 25/79 (32%), Positives = 42/79 (53%), Gaps = 0/79 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F  M + PE+ + V    +  P+ IQ  +I  ++ G DV+  A++G+GKT  FSI V
Sbjct  24   VDSFDTMNLKPELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISV  83

Query  61   IQIVYETLKDQQEGKKGKT  79
            +Q +   +K  Q      T
Sbjct  84   LQKLDPNVKQCQALILAPT  102


>sp|Q088J2|RHLB_SHEFN ATP-dependent RNA helicase RhlB OS=Shewanella 
frigidimarina (strain NCIMB 400) OX=318167 GN=rhlB PE=3 
SV=1
Length=434

 Score = 303 bits (775),  Expect = 3e-94, Method: Composition-based stats.
 Identities = 111/453 (25%), Positives = 183/453 (40%), Gaps = 71/453 (16%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
            +K   D  L  EI   +          ++   L      ++            ++   G 
Sbjct  8    TKKFADFPLKPEILAALNENGFEFCTPIQALSLPILLNAKD--------IAGQAQTGTGK  59

Query  266  IVKSQHSG-NAQVTQTKF---LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLREL  321
             +    +  N  +            P+A+I+ P+RELA Q   + K    +     L+  
Sbjct  60   TMAFLVATFNHLLNVAAPESRKATEPRAIIMAPTRELAIQIAKDAKLLAAHTG---LKVG  116

Query  322  LIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYS  381
            ++ GG +   Q +VL+ GVDI++GT GR+ D V  G ++LS ++ +VLDEAD +   G+ 
Sbjct  117  IVYGGESYETQRAVLDKGVDILIGTTGRIIDYVRQGVISLSHIQAVVLDEADRMFDLGFI  176

Query  382  DFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV  441
              I  +  ++P    D K    ++ SATL S  V++L+   M+ P  V+++  +     +
Sbjct  177  KDIRFLFRRMP----DAKSRLNMLFSATL-SMKVQELAYDHMNDPEKVEIEPLEKTSKNI  231

Query  442  H-HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRA  500
               +  P      RL                                          +  
Sbjct  232  KEEIFYPSMEDKMRL-----------------------------------------LLSL  250

Query  501  IKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLER  560
            I+E   D+AI+F  TK  C+ L  Y          +G       L GD    +R + LE+
Sbjct  251  IEEDWPDKAIVFSNTKHSCEKLWSYL---------EGDGHRVGLLTGDVPQKKRIRILEQ  301

Query  561  FKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            F  G++  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA + G++IS   
Sbjct  302  FTSGEIDVLVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGISISFAC  361

Query  621  TEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWY  653
             E       + +        +   +D       
Sbjct  362  EEYALNLPEIETYINHSIPVSNYDKDALLDDIP  394


 Score = 109 bits (271),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 62/356 (17%), Positives = 118/356 (33%), Gaps = 62/356 (17%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F++  + PEI  A+ E  +   T IQA S+P++L   D+   A+TG+GKT AF +   
Sbjct  9    KKFADFPLKPEILAALNENGFEFCTPIQALSLPILLNAKDIAGQAQTGTGKTMAFLVATF  68

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHG  121
              +        E +K         +   +  +    + +       GL            
Sbjct  69   NHLLNVAAP--ESRKATEPRAIIMAPTRELAIQI-AKDAKLLAAHTGLKV----------  115

Query  122  CRATKGLMKGKHYYEVS--CHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKS-HNKQ  178
                 G++ G   YE      D+G+           + +GT      +   G  S  + Q
Sbjct  116  -----GIVYGGESYETQRAVLDKGV----------DILIGTTGRIIDYVRQGVISLSHIQ  160

Query  179  FDNYGEEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFEIPPHMK---NQALFPACVLK  234
                             + +D+    F     KD+   F   P  K   N        +K
Sbjct  161  A----------------VVLDEADRMFDLGFIKDIRFLFRRMPDAKSRLNMLFSATLSMK  204

Query  235  NAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEP  294
              EL ++   +  K   +          +     S       +          KA++   
Sbjct  205  VQELAYDHMNDPEKVEIEPLEKTSKNIKEEIFYPSMEDKMRLLLSLIEEDWPDKAIVFSN  264

Query  295  SRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
            ++       ++ ++   Y++    R  L+ G V  + ++ +LE      +D++V T
Sbjct  265  TK-------HSCEKLWSYLEGDGHRVGLLTGDVPQKKRIRILEQFTSGEIDVLVAT  313


>sp|Q8Y7M8|DBPA_LISMO ATP-dependent RNA helicase DbpA OS=Listeria 
monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) 
OX=169963 GN=dbpA PE=2 SV=1
Length=470

 Score = 304 bits (778),  Expect = 3e-94, Method: Composition-based stats.
 Identities = 126/472 (27%), Positives = 187/472 (40%), Gaps = 85/472 (18%)

Query  210  KDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKS  269
             +L L+ EI   +       A  ++ A +      E+         VA S+   G     
Sbjct  2    NNLKLSEEIKRAINELGYTEATPVQKAVIPVALTGED--------IVAKSQTGSGKTAAF  53

Query  270  QHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAA  329
                     Q ++  N P+ALI+ P+RELA Q         ++    +++   I G    
Sbjct  54   AIPI---AEQVEWEENKPQALIIVPTRELAMQVKTECTNIGRF---KRVKAAAIYGQSPF  107

Query  330  RDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHN  389
              Q   L     IVVGTPGRL D +  G LN+ +V  LVLDE D +LS G+ D +  + +
Sbjct  108  AKQKLELSQKNHIVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILS  167

Query  390  QIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN  449
            ++P      K+ Q +  SAT+   +++ L ++    P  +++  E + P  + HV +  +
Sbjct  168  RLP------KQRQNLFFSATMP-EEMQDLIKRYQDNPMVIEMASEKTNP--IFHVEMQTD  218

Query  450  PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA  509
             K   L + L                                               D A
Sbjct  219  NKEKTLKDVLI------------------------------------------TENPDSA  236

Query  510  IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL  569
            IIFC TK   D L                      +HG  +  +R + ++ FK G  RFL
Sbjct  237  IIFCNTKNQVDELTDLL------------DVKASKIHGGLRQEDRFRAMDDFKSGKSRFL  284

Query  570  ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            I TDVA RGID+  V  VIN  LP EK+NYVHRIGR GRA + G AIS V T +  +   
Sbjct  285  IATDVAGRGIDVDNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRD  344

Query  630  --------VCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQV  673
                    +   R       ++ ED           +     E LN  I ++
Sbjct  345  IEEMLDVTIEKKRKPTVIEVKVNEDAFRKKQQKRPTIKKARGEKLNKNIMKL  396


 Score = 86.7 bits (213),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 9/99 (9%)

Query  5    SEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIV  64
            + + +  EI +A+ E+ +   T +Q   IP+ L G D++  ++TGSGKT AF+IP+ + V
Sbjct  2    NNLKLSEEIKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIPIAEQV  61

Query  65   YETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
                   Q                 +  M      +   
Sbjct  62   EWEENKPQ---------ALIIVPTRELAMQVKTECTNIG  91


>sp|Q2HFP1|IF4A_CHAGB ATP-dependent RNA helicase eIF4A OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / 
NBRC 6347 / NRRL 1970) OX=306901 GN=TIF1 PE=3 SV=1
Length=397

 Score = 301 bits (771),  Expect = 4e-94, Method: Composition-based stats.
 Identities = 111/428 (26%), Positives = 191/428 (45%), Gaps = 75/428 (18%)

Query  228  FPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQ--------V  277
            F    LK+  L+  + +G E      +   + + K     ++    SG  +        +
Sbjct  26   FDDMNLKSELLRGIYAYGFERPSAIQQRAIMPVIKG--HDVIAQAQSGTGKTATFSISVL  83

Query  278  TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE  337
             +      + +ALI+ P+RELA+Q    +     +++   +     IGG + RD +  L+
Sbjct  84   QKIDPTVKSCQALILAPTRELAQQIQKVVIAIGDFMN---IECHACIGGTSVRDDMKALQ  140

Query  338  NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD  397
            +G  ++VGTPGR+ D++    L   Q++  VLDEAD +LS+G+++ I  +   +PQ T  
Sbjct  141  DGPQVIVGTPGRVHDMIQRRILKTDQMKMFVLDEADEMLSRGFTEQIYDIFQLLPQST--  198

Query  398  GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWE  457
                QV++ SAT+   DV +++ K M  P  + +K ++   + +    + V  +  +L  
Sbjct  199  ----QVVLLSATMP-QDVLEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKEDWKL--  251

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
                                              L   Y    I      QA+IFC T+ 
Sbjct  252  --------------------------------DTLSDLYETVTIT-----QAVIFCNTRR  274

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
              D L             +   F+   +HGD    +R   ++ F+ G  R LI TD+ AR
Sbjct  275  KVDWLTDKL---------QARDFTVSAMHGDMDQTQRDLIMKEFRSGSSRVLIATDLLAR  325

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
            GID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V  +  ++   +     + 
Sbjct  326  GIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREI-----EQ  380

Query  638  CYNTRLKE  645
             Y+T+++E
Sbjct  381  FYSTQIEE  388


 Score = 97.1 bits (240),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 0/79 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F +M +  E+ + +    +  P+ IQ  +I  ++ G DV+  A++G+GKT  FSI V
Sbjct  23   VDSFDDMNLKSELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISV  82

Query  61   IQIVYETLKDQQEGKKGKT  79
            +Q +  T+K  Q      T
Sbjct  83   LQKIDPTVKSCQALILAPT  101


>sp|Q5B948|IF4A_EMENI ATP-dependent RNA helicase eIF4A OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / 
NRRL 194 / M139) OX=227321 GN=tif1 PE=3 SV=2
Length=398

 Score = 301 bits (770),  Expect = 5e-94, Method: Composition-based stats.
 Identities = 115/426 (27%), Positives = 190/426 (45%), Gaps = 71/426 (17%)

Query  228  FPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN------AQVTQ  279
            F +  LK   L+  + +G E      +   + + K  D        +G       + + +
Sbjct  27   FDSMELKPELLRGVYAYGFERPSAIQQRAILPIVKGNDVIAQAQSGTGKTATFSISALQK  86

Query  280  TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
                  A +ALIV P+RELA+Q    +     +++   ++    IGG A RD ++ L  G
Sbjct  87   LDPNVKACQALIVAPTRELAQQIQKVVIAIGDFMN---IQCHACIGGTAVRDDMNALREG  143

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
              IVVGTPGR+ D++    L   Q++  +LDEAD +LS+G+++ I  +   +PQ T    
Sbjct  144  PQIVVGTPGRIHDMIQRRVLKTDQMKMFILDEADEMLSRGFTEQIYDIFQLLPQST----  199

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              QV++ SAT+   DV +++ K M  P  + +K ++   + +    + V  +  +L    
Sbjct  200  --QVVLLSATMP-QDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKL----  252

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
                                            L   Y    I      QA+IFC T+   
Sbjct  253  ------------------------------DTLSDLYETVTIT-----QAVIFCNTRRKV  277

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            D L                 F+   +HGD +  +R   ++ F+ G  R LI TD+ ARGI
Sbjct  278  DWLTDKLT---------ARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGI  328

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCY  639
            D+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V  +  ++   +     +  Y
Sbjct  329  DVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREI-----EQFY  383

Query  640  NTRLKE  645
            +T+++E
Sbjct  384  STQIEE  389


 Score = 91.0 bits (224),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 39/70 (56%), Gaps = 0/70 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +F  M + PE+ + V    +  P+ IQ  +I  I+ G DV+  A++G+GKT  FSI  +Q
Sbjct  26  SFDSMELKPELLRGVYAYGFERPSAIQQRAILPIVKGNDVIAQAQSGTGKTATFSISALQ  85

Query  63  IVYETLKDQQ  72
            +   +K  Q
Sbjct  86  KLDPNVKACQ  95


>sp|A1D7N3|IF4A_NEOFI ATP-dependent RNA helicase eIF4A OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=tif1 
PE=3 SV=1
Length=398

 Score = 301 bits (770),  Expect = 5e-94, Method: Composition-based stats.
 Identities = 109/426 (26%), Positives = 186/426 (44%), Gaps = 71/426 (17%)

Query  228  FPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN------AQVTQ  279
            F +  LK   L+  + +G E      +   + + K  D        +G       + + +
Sbjct  27   FDSMELKPELLRGIYAYGFERPSAIQQRAILPIIKGNDVIAQAQSGTGKTATFSISALQK  86

Query  280  TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
                    +ALI+ P+RELA+Q    +     +++   +     IGG   R+ +  L+ G
Sbjct  87   LDPNVKGCQALILAPTRELAQQIQKVVVAIGDFMN---IECHACIGGTNVREDMKALQEG  143

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
              +VVGTPGR+ D++    L    ++  +LDEAD +LS+G+++ I  +   +PQ T    
Sbjct  144  PQVVVGTPGRVQDMIQRRVLRTDNLKMFILDEADEMLSRGFTEQIYDIFQLLPQST----  199

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              QV++ SAT+   DV +++ K M  P  + +K ++   + +    + V  +  +L    
Sbjct  200  --QVVLLSATMP-QDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKL----  252

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
                                            L   Y    I      QA+IFC T+   
Sbjct  253  ------------------------------DTLSDLYETVTIT-----QAVIFCNTRRKV  277

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            D L                 F+   +HGD +  +R   ++ F+ G  R LI TD+ ARGI
Sbjct  278  DWLTDKLT---------ARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGI  328

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCY  639
            D+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V  +  ++   +     +  Y
Sbjct  329  DVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREI-----EQFY  383

Query  640  NTRLKE  645
            +T+++E
Sbjct  384  STQIEE  389


 Score = 92.1 bits (227),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 40/77 (52%), Gaps = 0/77 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F  M + PE+ + +    +  P+ IQ  +I  I+ G DV+  A++G+GKT  FSI  +Q
Sbjct  26   SFDSMELKPELLRGIYAYGFERPSAIQQRAILPIIKGNDVIAQAQSGTGKTATFSISALQ  85

Query  63   IVYETLKDQQEGKKGKT  79
             +   +K  Q      T
Sbjct  86   KLDPNVKGCQALILAPT  102


>sp|Q8GY84|RH10_ARATH DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis 
thaliana OX=3702 GN=RH10 PE=1 SV=2
Length=456

 Score = 303 bits (775),  Expect = 5e-94, Method: Composition-based stats.
 Identities = 113/503 (22%), Positives = 188/503 (37%), Gaps = 79/503 (16%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K   +LG+  E+    +         ++   L F               + L++   G  
Sbjct  9    KTFAELGVREELVKACERLGWKNPSKIQAEALPFAL--------EGKDVIGLAQTGSGKT  60

Query  267  VKSQHSG---------NAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPK  317
                            +++  + +    A  A ++ P+RELA Q     +       +  
Sbjct  61   GAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGA---DIS  117

Query  318  LRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVS-TGKLNLSQVRFLVLDEADGLL  376
            LR  +++GG+    Q   L     ++V TPGRL D +S T   +L  +++LVLDEAD LL
Sbjct  118  LRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLL  177

Query  377  SQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDS  436
            ++ +   +N++  +IP         +  + SAT+    V+KL    +  P  ++   + S
Sbjct  178  NEDFEKSLNQILEEIPL------ERKTFLFSATMTK-KVRKLQRACLRNPVKIEAASKYS  230

Query  437  VPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEY  496
              DT+      V  K                                         K  Y
Sbjct  231  TVDTLKQQYRFVAAK----------------------------------------YKDCY  250

Query  497  AVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQ  556
             V  + E     ++IF RT      L       G         F  + + G     +R  
Sbjct  251  LVYILSEMPESTSMIFTRTCDGTRFLALVLRSLG---------FRAIPISGQMTQSKRLG  301

Query  557  NLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAI  616
             L +FK G+   L+CTDVA+RG+DI  V  VIN  +P   ++Y+HR+GR  RA R G+ I
Sbjct  302  ALNKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGI  361

Query  617  SLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWY--NEMQLLSEIEEHLNCTISQVE  674
            SLV   + + +  +    GK       +ED   ++     E + LS +    +    +  
Sbjct  362  SLVNQYELEWYIQIEKLIGKKLPEYPAEEDEVLSLLERVAEAKKLSAMNMKESGGRKRRG  421

Query  675  PDIKVPVDEFDGKVTYGQKRAAG  697
             D +       G    G K   G
Sbjct  422  EDDEESERFLGGNKDRGNKERGG  444


 Score = 112 bits (280),  Expect = 6e-25, Method: Composition-based stats.
 Identities = 39/115 (34%), Positives = 61/115 (53%), Gaps = 5/115 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F+E+GV  E+ +A E + W  P+ IQAE++P  L G DV+  A+TGSGKTGAF+IP+
Sbjct  8    VKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPI  67

Query  61   IQIVYETLKDQQEGKKGKTTIKT----GASVLNKWQMNPYDRGSAFAIGSDGLCC  111
            +Q + E + D +  KKG+           S   +  +   ++  A        C 
Sbjct  68   LQALLEYVYDSEP-KKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCA  121


>sp|A6RJ45|IF4A_BOTFB ATP-dependent RNA helicase eIF4A OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=tif1 PE=3 SV=1
Length=398

 Score = 301 bits (770),  Expect = 5e-94, Method: Composition-based stats.
 Identities = 111/428 (26%), Positives = 186/428 (43%), Gaps = 75/428 (18%)

Query  228  FPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQ--------V  277
            F    LK   L+  + +G E      +   + + K     ++    SG  +        +
Sbjct  27   FDTMNLKPELLRGVYAYGFERPSAIQQRAIMPVIKG--HDVIAQAQSGTGKTATFSISVL  84

Query  278  TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE  337
             +        +ALI+ P+RELA+Q    +     +++   +     IGG + RD +  L+
Sbjct  85   QKLDPNVKQCQALILAPTRELAQQIQKVVVAIGDFMN---VECHACIGGTSVRDDMKALQ  141

Query  338  NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD  397
            +G  +VVGTPGR+ D++    L    ++  VLDEAD +LS+G+++ I  +   +PQ T  
Sbjct  142  DGPQVVVGTPGRVHDMIQRRFLKTDSMKMFVLDEADEMLSRGFTEQIYDIFQLLPQST--  199

Query  398  GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWE  457
                QV++ SAT+   DV +++ K M  P  + +K  +   + +    + V  +  +L  
Sbjct  200  ----QVVLLSATMP-QDVLEVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKEDWKL--  252

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
                                              L   Y    I      QA+IFC T+ 
Sbjct  253  --------------------------------DTLSDLYETVTIT-----QAVIFCNTRR  275

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
              D L                 F+   +HGD    +R   ++ F+ G  R LI TD+ AR
Sbjct  276  KVDWLTDKLT---------ARDFTVSAMHGDMDQGQRDLIMKEFRSGSSRVLIATDLLAR  326

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
            GID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V  +  ++   +     + 
Sbjct  327  GIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREI-----EQ  381

Query  638  CYNTRLKE  645
             Y+T+++E
Sbjct  382  FYSTQIEE  389


 Score = 95.6 bits (236),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 25/79 (32%), Positives = 42/79 (53%), Gaps = 0/79 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F  M + PE+ + V    +  P+ IQ  +I  ++ G DV+  A++G+GKT  FSI V
Sbjct  24   VDSFDTMNLKPELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISV  83

Query  61   IQIVYETLKDQQEGKKGKT  79
            +Q +   +K  Q      T
Sbjct  84   LQKLDPNVKQCQALILAPT  102


>sp|C3LQR1|RHLB_VIBCM ATP-dependent RNA helicase RhlB OS=Vibrio 
cholerae serotype O1 (strain M66-2) OX=579112 GN=rhlB PE=3 
SV=1
Length=438

 Score = 302 bits (773),  Expect = 6e-94, Method: Composition-based stats.
 Identities = 121/503 (24%), Positives = 201/503 (40%), Gaps = 91/503 (18%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
              D GL  ++   ++ +       ++   L      ++            ++   G  + 
Sbjct  11   FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQD--------IAGQAQTGTGKTLA  62

Query  269  SQHSGNAQVTQTKFLPN----APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
               +    +  T          P+A+I+ P+RELA Q  N+ +     + +  L+  L  
Sbjct  63   FLTATFNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPL---LASTGLKAALAY  119

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG +   QL+ L++GVDI++GT GR+ D       NL+ ++ +VLDEAD +   G+   I
Sbjct  120  GGESYDKQLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDI  179

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-H  443
              +  ++P+     K    ++ SATL S+ V++L+ + M+ P  V ++ E      +   
Sbjct  180  RFLFRRMPE----PKDRLNMLFSATL-SYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEE  234

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
            +  P N     L + L                                         I+E
Sbjct  235  LFYPSNEHKMALLQTL-----------------------------------------IEE  253

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
               D+AIIF  TK  C+ +  +                   L GD    +R++ LE+F +
Sbjct  254  EWPDRAIIFANTKHRCEQIWAHL---------AADNHRVGLLTGDVPQKKRERILEQFTQ  304

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
            GDV  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +IS    E 
Sbjct  305  GDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEY  364

Query  624  EKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDE  683
                  + S            E    T  Y+   LL+++   L+   S           +
Sbjct  365  AINLPAIES----------YIEHAIPTSDYDPSALLTDLPAPLSLRSSP----------Q  404

Query  684  FDGKVTYGQKRAAGGGSYKGHVD  706
                 T G + +  GG+ K    
Sbjct  405  QRRTNTAGSRNSNNGGNRKPQQR  427


 Score = 105 bits (261),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 58/351 (17%), Positives = 114/351 (32%), Gaps = 56/351 (16%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F++ G+ P++   +E+  ++  T IQA ++P++L G D+   A+TG+GKT AF       
Sbjct  11   FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +  T     EG+          +   +  +  ++               +  +    G +
Sbjct  71   LLTTPAA--EGRAETQPRAIIMAPTRELAIQIFN--------------DAEPLLASTGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
            A        +  +++    G+           + +GT                +  D Y 
Sbjct  115  AALAYGGESYDKQLAKLQSGV----------DILIGTTG--------------RIIDFYK  150

Query  184  EEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFEI---PPHMKNQALFPACVLKNAELK  239
            +     + I   + +D+    F     KD+   F     P    N         +  EL 
Sbjct  151  QRVFNLNHIQAVV-LDEADRMFDLGFIKDIRFLFRRMPEPKDRLNMLFSATLSYRVQELA  209

Query  240  FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELA  299
            F           +       +  +     S     A +          +A+I   ++   
Sbjct  210  FEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTLIEEEWPDRAIIFANTKHRC  269

Query  300  EQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
            EQ          ++     R  L+ G V  + +  +LE      VDI+V T
Sbjct  270  EQIW-------AHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDILVAT  313


>sp|Q9KV52|RHLB_VIBCH ATP-dependent RNA helicase RhlB OS=Vibrio 
cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) 
OX=243277 GN=rhlB PE=3 SV=1
Length=438

 Score = 302 bits (773),  Expect = 6e-94, Method: Composition-based stats.
 Identities = 121/503 (24%), Positives = 201/503 (40%), Gaps = 91/503 (18%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
              D GL  ++   ++ +       ++   L      ++            ++   G  + 
Sbjct  11   FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQD--------IAGQAQTGTGKTLA  62

Query  269  SQHSGNAQVTQTKFLPN----APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
               +    +  T          P+A+I+ P+RELA Q  N+ +     + +  L+  L  
Sbjct  63   FLTATFNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPL---LASTGLKAALAY  119

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG +   QL+ L++GVDI++GT GR+ D       NL+ ++ +VLDEAD +   G+   I
Sbjct  120  GGESYDKQLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDI  179

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-H  443
              +  ++P+     K    ++ SATL S+ V++L+ + M+ P  V ++ E      +   
Sbjct  180  RFLFRRMPE----PKDRLNMLFSATL-SYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEE  234

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
            +  P N     L + L                                         I+E
Sbjct  235  LFYPSNEHKMALLQTL-----------------------------------------IEE  253

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
               D+AIIF  TK  C+ +  +                   L GD    +R++ LE+F +
Sbjct  254  EWPDRAIIFANTKHRCEQIWAHL---------AADNHRVGLLTGDVPQKKRERILEQFTQ  304

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
            GDV  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +IS    E 
Sbjct  305  GDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEY  364

Query  624  EKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDE  683
                  + S            E    T  Y+   LL+++   L+   S           +
Sbjct  365  AINLPAIES----------YIEHAIPTSDYDPSALLTDLPAPLSLRSSP----------Q  404

Query  684  FDGKVTYGQKRAAGGGSYKGHVD  706
                 T G + +  GG+ K    
Sbjct  405  QRRTNTAGSRNSNNGGNRKPQQR  427


 Score = 105 bits (261),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 58/351 (17%), Positives = 114/351 (32%), Gaps = 56/351 (16%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F++ G+ P++   +E+  ++  T IQA ++P++L G D+   A+TG+GKT AF       
Sbjct  11   FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +  T     EG+          +   +  +  ++               +  +    G +
Sbjct  71   LLTTPAA--EGRAETQPRAIIMAPTRELAIQIFN--------------DAEPLLASTGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
            A        +  +++    G+           + +GT                +  D Y 
Sbjct  115  AALAYGGESYDKQLAKLQSGV----------DILIGTTG--------------RIIDFYK  150

Query  184  EEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFEI---PPHMKNQALFPACVLKNAELK  239
            +     + I   + +D+    F     KD+   F     P    N         +  EL 
Sbjct  151  QRVFNLNHIQAVV-LDEADRMFDLGFIKDIRFLFRRMPEPKDRLNMLFSATLSYRVQELA  209

Query  240  FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELA  299
            F           +       +  +     S     A +          +A+I   ++   
Sbjct  210  FEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTLIEEEWPDRAIIFANTKHRC  269

Query  300  EQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
            EQ          ++     R  L+ G V  + +  +LE      VDI+V T
Sbjct  270  EQIW-------AHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDILVAT  313


>sp|A5F3R4|RHLB_VIBC3 ATP-dependent RNA helicase RhlB OS=Vibrio 
cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 
395 / O395) OX=345073 GN=rhlB PE=3 SV=1
Length=438

 Score = 302 bits (773),  Expect = 6e-94, Method: Composition-based stats.
 Identities = 121/503 (24%), Positives = 201/503 (40%), Gaps = 91/503 (18%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
              D GL  ++   ++ +       ++   L      ++            ++   G  + 
Sbjct  11   FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQD--------IAGQAQTGTGKTLA  62

Query  269  SQHSGNAQVTQTKFLPN----APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
               +    +  T          P+A+I+ P+RELA Q  N+ +     + +  L+  L  
Sbjct  63   FLTATFNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPL---LASTGLKAALAY  119

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG +   QL+ L++GVDI++GT GR+ D       NL+ ++ +VLDEAD +   G+   I
Sbjct  120  GGESYDKQLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDI  179

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-H  443
              +  ++P+     K    ++ SATL S+ V++L+ + M+ P  V ++ E      +   
Sbjct  180  RFLFRRMPE----PKDRLNMLFSATL-SYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEE  234

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
            +  P N     L + L                                         I+E
Sbjct  235  LFYPSNEHKMALLQTL-----------------------------------------IEE  253

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
               D+AIIF  TK  C+ +  +                   L GD    +R++ LE+F +
Sbjct  254  EWPDRAIIFANTKHRCEQIWAHL---------AADNHRVGLLTGDVPQKKRERILEQFTQ  304

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
            GDV  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +IS    E 
Sbjct  305  GDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEY  364

Query  624  EKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDE  683
                  + S            E    T  Y+   LL+++   L+   S           +
Sbjct  365  AINLPAIES----------YIEHAIPTSDYDPSALLTDLPAPLSLRSSP----------Q  404

Query  684  FDGKVTYGQKRAAGGGSYKGHVD  706
                 T G + +  GG+ K    
Sbjct  405  QRRTNTAGSRNSNNGGNRKPQQR  427


 Score = 105 bits (261),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 58/351 (17%), Positives = 114/351 (32%), Gaps = 56/351 (16%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F++ G+ P++   +E+  ++  T IQA ++P++L G D+   A+TG+GKT AF       
Sbjct  11   FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +  T     EG+          +   +  +  ++               +  +    G +
Sbjct  71   LLTTPAA--EGRAETQPRAIIMAPTRELAIQIFN--------------DAEPLLASTGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
            A        +  +++    G+           + +GT                +  D Y 
Sbjct  115  AALAYGGESYDKQLAKLQSGV----------DILIGTTG--------------RIIDFYK  150

Query  184  EEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFEI---PPHMKNQALFPACVLKNAELK  239
            +     + I   + +D+    F     KD+   F     P    N         +  EL 
Sbjct  151  QRVFNLNHIQAVV-LDEADRMFDLGFIKDIRFLFRRMPEPKDRLNMLFSATLSYRVQELA  209

Query  240  FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELA  299
            F           +       +  +     S     A +          +A+I   ++   
Sbjct  210  FEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTLIEEEWPDRAIIFANTKHRC  269

Query  300  EQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
            EQ          ++     R  L+ G V  + +  +LE      VDI+V T
Sbjct  270  EQIW-------AHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDILVAT  313


>sp|Q4P733|DED1_USTMA ATP-dependent RNA helicase DED1 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=DED1 PE=3 SV=1
Length=672

 Score = 309 bits (792),  Expect = 7e-94, Method: Composition-based stats.
 Identities = 90/355 (25%), Positives = 145/355 (41%), Gaps = 54/355 (15%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P  LI+ P+REL  Q  +  +   K+     ++  ++ GG     QL  +E G D++  T
Sbjct  276  PSTLILAPTRELVSQIHDEAR---KFTYRSWVKPAVVYGGADIVTQLRQIERGCDLLSAT  332

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL DL+  G+++LS VRFLVLDEAD +L  G+   I R+     +        Q ++ 
Sbjct  333  PGRLVDLMERGRISLSNVRFLVLDEADRMLDMGFEPQIRRIVEG--EDMPGVMDRQTLMF  390

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT    D++ L++  +    ++ +    S  + +   +  V     R            
Sbjct  391  SATFP-RDIQLLAKDFLKEYVFLSVGRVGSTSENITQKIEYVEDDDKR------------  437

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                                                       +IF  TK   D L  + 
Sbjct  438  ---------------------------SVLLDVLASMPSGGLTLIFVETKRMADMLSDFL  470

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
            ++          +     +HGDR   ER++ LE F+ G    ++ T VAARG+DI  V +
Sbjct  471  LR---------SKIGATSIHGDRTQRERERALELFRSGKTPIMVATAVAARGLDIPNVTH  521

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
            V+N  LP +  +YVHRIGR GRA  +G A +      + +   +     +     
Sbjct  522  VVNYDLPSDVDDYVHRIGRTGRAGNVGHATAFFNRGNKNIVRDLIELLKEANQEV  576


 Score = 96.4 bits (238),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 25/115 (22%), Positives = 48/115 (42%), Gaps = 9/115 (8%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F+   +   + + ++   +  PT +Q  SIP+I  G D++  A+TGSGKTG F  P+
Sbjct  188  VTTFTSPPIDAHLLENIKLARYTNPTPVQKYSIPIIKLGRDLMGCAQTGSGKTGGFLFPI  247

Query  61   IQIVYETLK------DQQEGKKGKTTIKTGASVL---NKWQMNPYDRGSAFAIGS  106
            +  ++          +  +G   +        +L    +     +D    F   S
Sbjct  248  LSALFTHGPPPPSAAEMAQGGYNRRKAYPSTLILAPTRELVSQIHDEARKFTYRS  302


>sp|A4QVP2|IF4A_PYRO7 ATP-dependent RNA helicase eIF4A OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=TIF1 PE=3 SV=1
Length=396

 Score = 300 bits (769),  Expect = 7e-94, Method: Composition-based stats.
 Identities = 112/426 (26%), Positives = 185/426 (43%), Gaps = 71/426 (17%)

Query  228  FPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN  285
            F    LK+  L+  + +G E      +   + + K  D        +G         L  
Sbjct  25   FDEMNLKSELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQK  84

Query  286  ------APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
                    +ALI+ P+RELA+Q    +     +++   +     IGG + RD +  L++G
Sbjct  85   IDTNVKQCQALILAPTRELAQQIQKVVVAIGDFMN---IECHACIGGTSVRDDMKALQDG  141

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
              +VVGTPGR+ D++    L    ++  VLDEAD +LS+G+++ I  +   +PQ T    
Sbjct  142  PQVVVGTPGRVHDMIQRRFLKTDGMKMFVLDEADEMLSRGFTEQIYDIFQLLPQST----  197

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              QV++ SAT+   DV +++ K M  P  + +K ++   + +    + V  +  +L    
Sbjct  198  --QVVLLSATMP-QDVLEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKEEWKL----  250

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
                                            L   Y    I      QA+IFC T+   
Sbjct  251  ------------------------------DTLSDLYETVTIT-----QAVIFCNTRRKV  275

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            D L                 F+   +HGD    +R   ++ F+ G  R LI TD+ ARGI
Sbjct  276  DWLTDKLT---------ARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGI  326

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCY  639
            D+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V  +  ++   +     +  Y
Sbjct  327  DVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREI-----EQFY  381

Query  640  NTRLKE  645
            +T+++E
Sbjct  382  STQIEE  387


 Score = 96.7 bits (239),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 0/79 (0%)

Query  1   MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
           + +F EM +  E+ + +    +  P+ IQ  +I  ++ G DV+  A++G+GKT  FSI V
Sbjct  22  VDSFDEMNLKSELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISV  81

Query  61  IQIVYETLKDQQEGKKGKT  79
           +Q +   +K  Q      T
Sbjct  82  LQKIDTNVKQCQALILAPT  100


>sp|Q12S35|RHLB_SHEDO ATP-dependent RNA helicase RhlB OS=Shewanella 
denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) 
OX=318161 GN=rhlB PE=3 SV=1
Length=432

 Score = 302 bits (772),  Expect = 7e-94, Method: Composition-based stats.
 Identities = 111/454 (24%), Positives = 185/454 (41%), Gaps = 63/454 (14%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
            ++   DL L  E+   +          ++   L       + K           K     
Sbjct  8    TQRFADLPLHAEVIQALNENGFEFCTPIQALSLPVLL---KAKDIAGQAQTGTGKTMAFL  64

Query  266  IVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
            +    H       Q + L N P+A+I+ P+RELA Q   +     K+     L+  ++ G
Sbjct  65   VATFNHLLTTPAPQAREL-NQPRAIIMAPTRELAIQIAKDANLLAKHTG---LKVGIVYG  120

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            G +   Q  VL+ GVDI++GT GR+ D V  G ++L+ ++ +VLDEAD +   G+   I 
Sbjct  121  GESYEVQREVLDKGVDILIGTTGRIIDYVRQGVISLNSIQAVVLDEADRMFDLGFIKDIR  180

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HV  444
             +  ++P  +S       ++ SATL S  V++L+   M+ P  V++  E+     +   +
Sbjct  181  FLFRRMPDASS----RLNMLFSATL-SMKVQELAYDHMNDPEKVEVTPEEKTSKNIKEEI  235

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
              P      RL                                          +  ++E 
Sbjct  236  FYPSTEDKMRL-----------------------------------------LLTLMEED  254

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
              ++AI+F  TK  C+NL  +          +G       L GD    +R + LE+F  G
Sbjct  255  WPEKAIVFSNTKHSCENLWSWL---------EGDGHRVGLLTGDVPQKKRIRILEQFTSG  305

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            D+  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G+++S       
Sbjct  306  DLDVLVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACETYA  365

Query  625  KVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                 +    G     +R   +         +++
Sbjct  366  LNLPAIEQYIGHSVPVSRYDREALLDDIPTPVKI  399


 Score = 104 bits (260),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 60/353 (17%), Positives = 117/353 (33%), Gaps = 60/353 (17%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+++ +  E+ QA+ E  +   T IQA S+P++L   D+   A+TG+GKT AF +     
Sbjct  11   FADLPLHAEVIQALNENGFEFCTPIQALSLPVLLKAKDIAGQAQTGTGKTMAFLVATFNH  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +  T   Q   ++         +   +  +    + +       GL              
Sbjct  71   LLTTPAPQ--ARELNQPRAIIMAPTRELAIQI-AKDANLLAKHTGLKV------------  115

Query  124  ATKGLMKGKHYYEV--SCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDN  181
               G++ G   YEV     D+G+           + +GT      +   G  S N     
Sbjct  116  ---GIVYGGESYEVQREVLDKGV----------DILIGTTGRIIDYVRQGVISLN-----  157

Query  182  YGEEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFEIPPHMK---NQALFPACVLKNAE  237
                          + +D+    F     KD+   F   P      N        +K  E
Sbjct  158  ---SIQA-------VVLDEADRMFDLGFIKDIRFLFRRMPDASSRLNMLFSATLSMKVQE  207

Query  238  LKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRE  297
            L ++   +  K              +     S       +          KA++   ++ 
Sbjct  208  LAYDHMNDPEKVEVTPEEKTSKNIKEEIFYPSTEDKMRLLLTLMEEDWPEKAIVFSNTK-  266

Query  298  LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                  ++ +    +++    R  L+ G V  + ++ +LE      +D++V T
Sbjct  267  ------HSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGDLDVLVAT  313


>sp|Q1DQ20|IF4A_COCIM ATP-dependent RNA helicase eIF4A OS=Coccidioides 
immitis (strain RS) OX=246410 GN=TIF1 PE=3 SV=1
Length=398

 Score = 300 bits (769),  Expect = 9e-94, Method: Composition-based stats.
 Identities = 112/426 (26%), Positives = 187/426 (44%), Gaps = 71/426 (17%)

Query  228  FPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN------AQVTQ  279
            F A  L+   L+  + +G E      +   + + K  D        +G       + + +
Sbjct  27   FDAMNLRAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQK  86

Query  280  TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
                  A +ALI+ P+RELA+Q    +     ++    +     IGG   R+ +  L +G
Sbjct  87   VDTNLKACQALILAPTRELAQQIQKVVVAIGDFMS---VECHACIGGTNVREDIKALNDG  143

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
              +VVGTPGR+ D++    L   Q++  VLDEAD +LS+G+++ I  +   +PQ T    
Sbjct  144  PQVVVGTPGRVHDMIQRRVLKTDQMKMFVLDEADEMLSRGFTEQIYDIFQFLPQST----  199

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              QV++ SAT+   DV  ++ K M  P  + +K  +   + +    + V  +  +L    
Sbjct  200  --QVVLLSATMP-QDVLDVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKEEWKL----  252

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
                                            L   Y    I      QA+IFC T+   
Sbjct  253  ------------------------------DTLSDLYETVTIT-----QAVIFCNTRRKV  277

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            D L    I            F+   +HG+ + ++R   ++ F+ G  R LI TD+ ARGI
Sbjct  278  DWLTDKLI---------ARDFTVSAMHGEMEQNQRDVIMKEFRSGSSRVLIATDLLARGI  328

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCY  639
            D+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V  +  ++   +     +  Y
Sbjct  329  DVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREI-----EQFY  383

Query  640  NTRLKE  645
            +T+++E
Sbjct  384  STQIEE  389


 Score = 91.0 bits (224),  Expect = 4e-18, Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 39/77 (51%), Gaps = 0/77 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F  M +  E+ + V    +  P+ IQ  +I  ++ G DV+  A++G+GKT  FSI  +Q
Sbjct  26   SFDAMNLRAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQ  85

Query  63   IVYETLKDQQEGKKGKT  79
             V   LK  Q      T
Sbjct  86   KVDTNLKACQALILAPT  102


>sp|Q4L7W0|CSHA_STAHJ DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus haemolyticus (strain JCSC1435) OX=279808 
GN=cshA PE=3 SV=1
Length=503

 Score = 304 bits (778),  Expect = 9e-94, Method: Composition-based stats.
 Identities = 110/530 (21%), Positives = 207/530 (39%), Gaps = 92/530 (17%)

Query  208  NGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIV  267
            N K+LG++ +    ++         ++   + +               +  ++   G   
Sbjct  3    NFKELGISDKTVETLEAMGFKEPTPIQKDSIPYTL--------EGKDILGQAQTGTGKTG  54

Query  268  KSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
                     + +     +  +ALI+ P+RELA Q    +++F +      ++ + + GG+
Sbjct  55   AF----GIPLIEKVVGQSGVQALILAPTRELAMQVAEQLREFSR---GQNVQVVTVFGGM  107

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM  387
                Q+  L+ G  IVVGTPGR+ D ++   L  + +  L+LDEAD +++ G+ D +  +
Sbjct  108  PIDRQIKALKRGPQIVVGTPGRVIDHLNRRTLKTNGIHTLILDEADEMMNMGFIDDMRFI  167

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
             ++IP      ++ Q ++ SAT+    ++ L ++ M  P  V     +     +      
Sbjct  168  MDKIP-----AEQRQTMLFSATMPKA-IQTLVQQFMKSPQIVKTMNNEMSDPQIDEYYTI  221

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
            V                                          + K +     +  H+ +
Sbjct  222  VKE----------------------------------------LEKFDTFTNFLDVHQPE  241

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
             AI+F RTK   D L    + +G         +    LHGD    +R + L++FK   + 
Sbjct  242  LAIVFGRTKRRVDELTSALLSKG---------YKAEGLHGDITQAKRLEVLKKFKNDQID  292

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             L+ TDVAARG+DI GV +V N  +P + ++Y HRIGR GRA + G+A++ V   +    
Sbjct  293  ILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYI  352

Query  628  YHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGK  687
              +  S G+     R                      H    +   E DIK  V  +  +
Sbjct  353  RQIEDSNGRRMNALR--------------------PPHRKEVLKAREDDIKDKVKNWMSR  392

Query  688  VTYGQKRAAGGGSYKGHV--DILAPTVQELAALEKEAQTSFLHLGYLPNQ  735
             +  + +       + +   +++A  +QEL     E +        L  +
Sbjct  393  ESEARLKRISSELLEEYDSTELVASLLQELVEANDEVEVQLTFEKPLARK  442


 Score = 101 bits (252),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 34/108 (31%), Positives = 55/108 (51%), Gaps = 12/108 (11%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M  F E+G+  +  + +E M +  PT IQ +SIP  L G D+L  A+TG+GKTGAF IP+
Sbjct  1    MQNFKELGISDKTVETLEAMGFKEPTPIQKDSIPYTLEGKDILGQAQTGTGKTGAFGIPL  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGAS-VLNKWQMNPYDRGSAFAIGSD  107
            I+ V            G++ ++        +  M   ++   F+ G +
Sbjct  61   IEKVV-----------GQSGVQALILAPTRELAMQVAEQLREFSRGQN  97


>sp|P57453|DEAD_BUCAI ATP-dependent RNA helicase DeaD OS=Buchnera 
aphidicola subsp. Acyrthosiphon pisum (strain APS) OX=107806 
GN=deaD PE=3 SV=1
Length=601

 Score = 307 bits (785),  Expect = 1e-93, Method: Composition-based stats.
 Identities = 112/469 (24%), Positives = 185/469 (39%), Gaps = 77/469 (16%)

Query  200  KGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALS  259
            +    F      LGL   I   +          ++ + +                 + ++
Sbjct  5    ESTFSF------LGLNPFIIQSLNEMGYVKPSPIQASCIPLLL--------EGRDVLGMA  50

Query  260  KAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLR  319
            +   G            +        AP+ L++ P+RELA Q       F KY+    + 
Sbjct  51   QTGSGKTAAFSL---PLLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKYM--IGIH  105

Query  320  ELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQG  379
             L + GG     QL  L  G  IVVGTPGRL D +  G LNLS +  LVLDEAD +L  G
Sbjct  106  VLPLYGGQRYELQLRALRQGPQIVVGTPGRLLDHLKRGTLNLSNLHGLVLDEADEMLRMG  165

Query  380  YSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPD  439
            + + +  +  QIP      K  Q  + SAT+    ++++S++ M  P  + ++   +   
Sbjct  166  FIEDVETIMAQIP------KEHQTALFSATMPEA-IRRISKRFMRNPKEIKIQSNITTRP  218

Query  440  TVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVR  499
             +      V  +                                         K +  +R
Sbjct  219  DIKQSYWMVYGR-----------------------------------------KTDALIR  237

Query  500  AIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLE  559
             ++       IIF RTK     + +   + G         ++   L+GD     R+Q LE
Sbjct  238  FLEAEDFSATIIFVRTKNATLEVSEALERNG---------YNSAALNGDMNQALREQTLE  288

Query  560  RFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            R K G +  LI TDVAARG+D+  + +VIN  +P + ++YVHRIGR GRA R G A+  V
Sbjct  289  RLKNGRLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFV  348

Query  620  ATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNC  668
               + ++  ++  +  +     +L +         E Q   ++++ L  
Sbjct  349  ENRERRLLRNIERTMKQSIPEVQLPKVELLCQRRLE-QFAKKVQQQLES  396


 Score = 109 bits (272),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 37/108 (34%), Positives = 57/108 (53%), Gaps = 9/108 (8%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + FS +G+ P I Q++ EM ++ P+ IQA  IPL+L G DVL  A+TGSGKT AFS+P++
Sbjct  6    STFSFLGLNPFIIQSLNEMGYVKPSPIQASCIPLLLEGRDVLGMAQTGSGKTAAFSLPLL  65

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGL  109
              +   LK  Q             +   +  +   +  S F+    G+
Sbjct  66   HNLNINLKAPQ---------ILVLAPTRELAVQVAEAFSDFSKYMIGI  104


>sp|Q5BDW4|PRP5_EMENI Pre-mRNA-processing ATP-dependent RNA helicase 
prp5 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 
/ CBS 112.46 / NRRL 194 / M139) OX=227321 GN=prp5 PE=3 SV=1
Length=1173

 Score = 319 bits (818),  Expect = 1e-93, Method: Composition-based stats.
 Identities = 104/492 (21%), Positives = 198/492 (40%), Gaps = 98/492 (20%)

Query  213  GLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHS  272
            GL  +    +          ++   +                 + ++K   G  +     
Sbjct  547  GLGIQTLDVIDKLGFASLTSIQAQAIPAIMS--------GRDVIGVAKTGSGKTMAFLIP  598

Query  273  GNAQVTQTKFLPN--APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
                +   + L N   P  LI+ P+RELA Q   + K F K ++   LR +   GG   +
Sbjct  599  MFRHIKDQRPLENMEGPIGLIMTPTRELATQIHKDCKPFLKALN---LRAVCAYGGAPIK  655

Query  331  DQLSVLENGVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRM  387
            DQ++ L+ G +I+V TPGR+ DL++       NL +V ++VLDEAD +   G+   + ++
Sbjct  656  DQIAELKRGAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKI  715

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
             + +          Q ++ SAT    +++ L+ K +  P  + + G   V   +  +V  
Sbjct  716  LSNV------RPDRQTVLFSATFP-RNMEALARKTLTKPIEIVVGGRSVVAPEITQIVEV  768

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
             N +                                   + +++L+    + +  E++  
Sbjct  769  CNEE----------------------------------KKFVRLLELLGNLYSTDENEDA  794

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
            +++IF   +   D L +  +++G         + C+ +HG +   +R   +E FK G   
Sbjct  795  RSLIFVDRQEAADTLLRELMRKG---------YPCMSIHGGKDQIDRDSTIEDFKAGIFP  845

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             LI T VAARG+D+  +  V+N   P+  ++YVHR GR GRA   G A++ +  ++E+  
Sbjct  846  VLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERYS  905

Query  628  YHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGK  687
              +  +                                L  +  +V   ++  VD F  K
Sbjct  906  VDIAKA--------------------------------LKQSGQEVPEAVQKLVDSFLEK  933

Query  688  VTYGQKRAAGGG  699
            V  G+++A+  G
Sbjct  934  VKAGKEKASNSG  945


 Score = 103 bits (256),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 27/97 (28%), Positives = 51/97 (53%), Gaps = 4/97 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  +S+ G+  +    ++++ +   T IQA++IP I+ G DV+  A+TGSGKT AF IP+
Sbjct  540  VQKWSQCGLGIQTLDVIDKLGFASLTSIQAQAIPAIMSGRDVIGVAKTGSGKTMAFLIPM  599

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYD  97
             + +    KDQ+  +  +  I    +   +     + 
Sbjct  600  FRHI----KDQRPLENMEGPIGLIMTPTRELATQIHK  632


>sp|A3LS22|RRP3_PICST ATP-dependent rRNA helicase RRP3 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=RRP3 PE=3 SV=3
Length=484

 Score = 303 bits (775),  Expect = 1e-93, Method: Composition-based stats.
 Identities = 105/442 (24%), Positives = 171/442 (39%), Gaps = 74/442 (17%)

Query  199  DKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVAL  258
                VKFS    +L L  E+   ++         +++  +                 + L
Sbjct  64   PDDEVKFST-FSELKLVPELLEAIQQMKFSKPTPIQSEAIPHAL--------EGKDIIGL  114

Query  259  SKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSRELAEQTLNNIKQFKKYIDNPK  317
            ++   G            + Q+ +    P   L++ P+RELA Q           +    
Sbjct  115  AQTGSGKTAAFAIP----ILQSLWEAQTPYFGLVLAPARELAYQIKETFDALGSTMG---  167

Query  318  LRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVS-TGKLNLSQVRFLVLDEADGLL  376
            +R + ++GG+   DQ   L     I++ TPGR+ D +  T   +L  +++ V+DEAD LL
Sbjct  168  VRTVCLVGGMDMMDQARDLMRKPHIIIATPGRIMDHLEHTKGFSLKMLKYFVMDEADKLL  227

Query  377  SQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDS  436
               +   ++++  QIP       +    + SAT+ +  ++KL    +H P  V +  +  
Sbjct  228  DLEFGPVLDKILKQIP------SKRTTYLFSATMTN-KIEKLQRASLHNPVRVAVSSKYQ  280

Query  437  VPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEY  496
              D +   ++ V+                                           K  Y
Sbjct  281  TADNLIQSMMLVS----------------------------------------DGYKNTY  300

Query  497  AVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQ  556
             +  + E      IIF RT+             G         FS V LHGD    +R  
Sbjct  301  LIHLLNEFVGKSIIIFARTRAHTQRTSILCRILG---------FSAVPLHGDLTQAQRLG  351

Query  557  NLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAI  616
            +L +FK G    LI TDVAARG+DI  V  VIN  +P + + YVHR+GR  RA R G +I
Sbjct  352  SLNKFKSGTANILIATDVAARGLDIPSVDVVINYDIPTDSKAYVHRVGRTARAGRSGKSI  411

Query  617  SLVATEKEKVWYHVCSSRGKGC  638
            SLV     +++  +  S  K  
Sbjct  412  SLVTQYDLEMYLRIEQSIQKKL  433


 Score = 109 bits (273),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 30/65 (46%), Positives = 50/65 (77%), Gaps = 0/65 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + FSE+ ++PE+ +A+++M +  PT IQ+E+IP  L G D++  A+TGSGKT AF+IP++
Sbjct  71   STFSELKLVPELLEAIQQMKFSKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPIL  130

Query  62   QIVYE  66
            Q ++E
Sbjct  131  QSLWE  135


>sp|Q6CZD9|RHLB_PECAS ATP-dependent RNA helicase RhlB OS=Pectobacterium 
atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491 
GN=rhlB PE=3 SV=3
Length=430

 Score = 301 bits (771),  Expect = 1e-93, Method: Composition-based stats.
 Identities = 114/453 (25%), Positives = 186/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++++       ++   L                    ++   G  +   
Sbjct  13   DFALHPQVIEALESKGFHYCTPIQALALPLTLS--------GRDVAGQAQTGTGKTLAFL  64

Query  271  HSG----NAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S      +     +   N P+ALI+ P+RELA Q  ++ +          L+  L  GG
Sbjct  65   ASTFHYLLSHPANAERQTNQPRALIMAPTRELAVQIHSDAEALSHLTG---LKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLENGVDI+VGT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLENGVDILVGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHVV  445
            +  ++P  +    +   ++ SATL S+ V++L+ + M+   +V+++ E      +   + 
Sbjct  182  LFRRMPATS----QRLNMLFSATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRITEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         ++E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------LEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+ IIF  TK  C+++  +    G              L GD    +R + LE F +G 
Sbjct  256  PDRCIIFANTKHRCEDVWGHLAADG---------HRVGLLTGDVAQKKRLRILEEFTQGS  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA + G +ISL   E   
Sbjct  307  IDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGQSGFSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + +  G G   ++   D          +L
Sbjct  367  NLPAIETYIGHGIPLSKYNSDALMNDLPAPKRL  399


 Score = 101 bits (251),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 56/355 (16%), Positives = 118/355 (33%), Gaps = 64/355 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E   +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPQVIEALESKGFHYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +     + +  ++         +   +  +  +                +  +    G +
Sbjct  71   LLSHPANAE--RQTNQPRALIMAPTRELAVQIH--------------SDAEALSHLTGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLENGV----------DILVGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAFEIPPHMKNQ--ALFPACVLKNAE  237
            ++    +       LD       + F K+ + L   F   P    +   LF A  L    
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPATSQRLNMLFSAT-LSYRV  205

Query  238  LKFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPS  295
             +  F +    ++   +            +    +    ++ QT      P + +I   +
Sbjct  206  RELAFEQMNNAEYVEVEPEQKTGHRITEELFYPSNEEKMRLLQTLLEEEWPDRCIIFANT  265

Query  296  RELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
            +       +  +    ++     R  L+ G VA + +L +LE      +DI+V T
Sbjct  266  K-------HRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILEEFTQGSIDILVAT  313


>sp|A5DQF1|RRP3_PICGU ATP-dependent rRNA helicase RRP3 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=RRP3 PE=3 
SV=2
Length=475

 Score = 302 bits (774),  Expect = 1e-93, Method: Composition-based stats.
 Identities = 107/460 (23%), Positives = 170/460 (37%), Gaps = 71/460 (15%)

Query  236  AELKFNFGEEEFKFPPKDGFVALSKAPDGYIV---KSQHSGNAQVTQTKFLP------NA  286
             EL     + ++  P      A+  A +G  +       SG         L         
Sbjct  73   PELMEAIEKLKYTKPTPIQSGAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWEAQRP  132

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
              AL++ P+RELA Q                +R + I+GG+   DQ   L     I+V T
Sbjct  133  YYALVLAPTRELAYQIKETFDALG---SGMGVRSVCIVGGMDMMDQARDLMRKPHILVAT  189

Query  347  PGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            PGR+ D + +T   +L  +++LV+DEAD LL   +   ++++   IP       +    +
Sbjct  190  PGRIMDHLENTKGFSLKSLQYLVMDEADRLLDMDFGPALDKILKVIPT------KRTTYL  243

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT+ +  + KL    +H P  V +  +    D +   ++ V+                
Sbjct  244  FSATMTN-KIAKLQRASLHEPVKVAVSNKYQTADNLVQSMMLVS----------------  286

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                                       K  + +  + E      I+F RT          
Sbjct  287  ------------------------DGYKNTFLIHLLNEFMGKSIIVFTRTCAHTQR----  318

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
                      +   FS V LHG     +R  +L +FK G    LI TDVAARG+DI  V 
Sbjct  319  -----STLLARILGFSAVPLHGQLTQSQRLGSLNKFKSGKANILIATDVAARGLDIPSVD  373

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
             VIN  +P + + Y+HR+GR  RA + G +ISLV     +++  + S  G          
Sbjct  374  VVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYDLEMYLRIESVLGFKLPKDPSPP  433

Query  646  DGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFD  685
                   +  +   S   E +  T    E   K   D+ D
Sbjct  434  RDVLNALHVHVDRAS--AEAIKQTKDFHEKRTKKKRDDRD  471


 Score = 108 bits (269),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 31/105 (30%), Positives = 54/105 (51%), Gaps = 9/105 (9%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             FSE+ ++PE+ +A+E++ +  PT IQ+ +IP  L G D++  A+TGSGKT AF+IP++Q
Sbjct  65   TFSELNLVPELMEAIEKLKYTKPTPIQSGAIPHALEGKDIIGLAQTGSGKTAAFAIPILQ  124

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
             ++E  +                +   +      +   A   G  
Sbjct  125  SLWEAQRP---------YYALVLAPTRELAYQIKETFDALGSGMG  160


>sp|Q88NB7|RHLB_PSEPK ATP-dependent RNA helicase RhlB OS=Pseudomonas 
putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 
11950 / KT2440) OX=160488 GN=rhlB PE=3 SV=1
Length=398

 Score = 300 bits (767),  Expect = 2e-93, Method: Composition-based stats.
 Identities = 110/448 (25%), Positives = 186/448 (42%), Gaps = 74/448 (17%)

Query  195  YLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDG  254
             ++  +G  +F     D  L+ E+   + +        ++   L +    ++        
Sbjct  1    MVEPQEGKTRF----HDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQD--------  48

Query  255  FVALSKAPDGYIVKSQHSGNAQVTQTKFLP----NAPKALIVEPSRELAEQTLNNIKQFK  310
             +  ++   G       S  +Q+ QT          P+ALI+ P+REL  Q   +     
Sbjct  49   AIGRAQTGTGKTAAFLISIISQLQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALT  108

Query  311  KYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVL  369
            KY     L  +  +GG+    QL  LE    DI+V TPGRL D    G+++L  V  +VL
Sbjct  109  KYTG---LNVMSFVGGMDFDKQLKALEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVL  165

Query  370  DEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWV  429
            DEAD +L  G+   + ++  Q P         Q ++ SAT    DV  L+++    P  V
Sbjct  166  DEADRMLDMGFIPQVRQIIRQTP----PKSERQTLLFSATFTD-DVMNLAKQWTTNPAIV  220

Query  430  DLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAI  489
            +++ E+   +TV   V  V                                         
Sbjct  221  EIEPENVASETVEQHVYAVAGSD-------------------------------------  243

Query  490  KILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDR  549
               K +     + ++K ++ ++F   K +   +E+  ++ G          +   L GD 
Sbjct  244  ---KYKLLYNLVTQNKWERVMVFANRKDEVRRIEEKLVRDG---------INAAQLSGDV  291

Query  550  KPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA  609
              H+R + LE F++G +  L+ TDVA RGI I G+ +VIN TLP++  +YVHRIGR GRA
Sbjct  292  PQHKRIRTLESFREGRITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRA  351

Query  610  ERMGLAISLVATEKEKVWYHVCSSRGKG  637
               G++IS    +       + +  G+ 
Sbjct  352  GTSGVSISFAGEDDSYQLPAIEALLGRK  379


 Score = 88.3 bits (217),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 42/94 (45%), Gaps = 2/94 (2%)

Query  2   AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             F +  +  E+  A+ ++ +   T IQA+ +   L G D +  A+TG+GKT AF I +I
Sbjct  9   TRFHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISII  68

Query  62  QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNP  95
             + +T   ++  +          +   +  +  
Sbjct  69  SQLQQTPPPKE--RYMGEPRALIIAPTRELVVQI  100


>sp|Q54CE0|DDX17_DICDI Probable ATP-dependent RNA helicase ddx17 
OS=Dictyostelium discoideum OX=44689 GN=ddx17 PE=3 SV=1
Length=785

 Score = 311 bits (796),  Expect = 2e-93, Method: Composition-based stats.
 Identities = 102/400 (26%), Positives = 174/400 (44%), Gaps = 69/400 (17%)

Query  252  KDGFVALSKAPDG----YIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIK  307
                + L+K   G    +++ S    NAQ    +   + P  L++ P+RELA Q      
Sbjct  421  GRDIIGLAKTGSGKTLAFLLPSIVHINAQPVLRE--DDGPIVLVLAPTRELALQIQEETN  478

Query  308  QFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFL  367
            +F       ++    + GG +   Q++ L+ GV+IV+ TPGRL D++ +GK NL +V +L
Sbjct  479  KFG---GTSQISNTCVYGGASKHTQVAALKKGVEIVIATPGRLIDILESGKTNLRRVTYL  535

Query  368  VLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPT  427
            VLDEAD +L  G+   I ++ +QI          Q ++ SAT    +V+ L+   +    
Sbjct  536  VLDEADRMLDMGFEPQIRKIISQI------RPDRQTLMFSATWPK-EVQALAHDFLTDHI  588

Query  428  WVDLKG-EDSVPDTVHHVVVPVN--PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEM  484
             V +   E +    V  +V       K +R+   LG                        
Sbjct  589  QVHIGSTEITANHNVRQIVEVCQDFEKKERMLSFLGSV----------------------  626

Query  485  WSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC  544
                                + ++ I+F  T+   D+L++     G         F  + 
Sbjct  627  -------------------GRDEKVIVFAETRKGVDDLQRVLQFSG---------FKSIG  658

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            +HG++   ER   L +FK G V  +I TDVA+RG+DI  + YV+N   P+  + Y+HRIG
Sbjct  659  IHGNKSQPERDFVLSQFKNGMVPIMIATDVASRGLDIKDIKYVVNYDFPNTIEVYIHRIG  718

Query  605  RVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLK  644
            R  RA   G++ SL+ T+  ++   +     +      ++
Sbjct  719  RTARAGASGVSYSLLTTDNARLANELIKVLTEAKQKIPIE  758


 Score = 102 bits (255),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 54/374 (14%), Positives = 123/374 (33%), Gaps = 60/374 (16%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F++      + + +    +  PT IQ+++ P+ L G D++  A+TGSGKT AF +P 
Sbjct  383  IMQFTQAPFPGYLMKEIIGAGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPS  442

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS--DGLCCQSREVKE  118
            I  +      Q   ++    I    +   +  +   +  + F   S     C      K 
Sbjct  443  IVHI----NAQPVLREDDGPIVLVLAPTRELALQIQEETNKFGGTSQISNTCVYGGASKH  498

Query  119  WHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQ  178
                   KG+       E+     G  R+         +L   +  +       +  +  
Sbjct  499  TQVAALKKGV-------EIVIATPG--RLIDILESGKTNL--RRVTYLVLDEADRMLDMG  547

Query  179  FDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAEL  238
            F+    +          +  D+  + FS          +    + +  L     +     
Sbjct  548  FEPQIRKIISQ------IRPDRQTLMFSA------TWPKEVQALAHDFLTDHIQVHIGST  595

Query  239  KFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSREL  298
            +                V + +  +             ++    +    K ++   +R  
Sbjct  596  EITANHN------VRQIVEVCQDFEKK--------ERMLSFLGSVGRDEKVIVFAETR--  639

Query  299  AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQ---LSVLENG-VDIVVGTPGRLDDLV  354
                   +   ++ +     + + I G  +  ++   LS  +NG V I++ T     D+ 
Sbjct  640  -----KGVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPIMIAT-----DVA  689

Query  355  STGKLNLSQVRFLV  368
            S G L++  ++++V
Sbjct  690  SRG-LDIKDIKYVV  702


>sp|Q0CXD0|IF4A_ASPTN ATP-dependent RNA helicase eIF4A OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=tif1 
PE=3 SV=2
Length=396

 Score = 299 bits (766),  Expect = 2e-93, Method: Composition-based stats.
 Identities = 115/426 (27%), Positives = 189/426 (44%), Gaps = 71/426 (17%)

Query  228  FPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN------AQVTQ  279
            F +  LK   L+  + +G E      +   + + K  D        +G       + + +
Sbjct  25   FDSMELKAELLRGVYAYGFERPSAIQQRAIMPIIKGNDVIAQAQSGTGKTATFSISALQK  84

Query  280  TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
                  A +ALIV P+RELA+Q    +     +++   +     IGG A RD +  L+ G
Sbjct  85   IDPNLKACQALIVAPTRELAQQIQKVVVAIGDFMN---INCHACIGGTAIRDDMKALQEG  141

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
              IVVGTPGR+ D++    L   Q++  +LDEAD +LS+G+++ I  +   +PQ T    
Sbjct  142  PPIVVGTPGRIQDMIQRRVLKTDQMKLFILDEADEMLSRGFTEQIYDIFQLLPQAT----  197

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              QV++ SAT+   DV +++ K M  P  + +K ++   + +    + V  +  +L    
Sbjct  198  --QVVLLSATMP-QDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKL----  250

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
                                            L   Y    I      QA+IFC T+   
Sbjct  251  ------------------------------DTLSDLYETVTIT-----QAVIFCNTRRKV  275

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            D L                 F+   +HGD +  +R   ++ F+ G  R LI TD+ ARGI
Sbjct  276  DWLTDKLT---------ARDFTVSAMHGDMEQSQRDIIMKEFRSGSSRVLIATDLLARGI  326

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCY  639
            D+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V  +  ++   +     +  Y
Sbjct  327  DVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREI-----EQFY  381

Query  640  NTRLKE  645
            +T+++E
Sbjct  382  STQIEE  387


 Score = 92.1 bits (227),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 0/70 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           +F  M +  E+ + V    +  P+ IQ  +I  I+ G DV+  A++G+GKT  FSI  +Q
Sbjct  24  SFDSMELKAELLRGVYAYGFERPSAIQQRAIMPIIKGNDVIAQAQSGTGKTATFSISALQ  83

Query  63  IVYETLKDQQ  72
            +   LK  Q
Sbjct  84  KIDPNLKACQ  93


>sp|C6DHF5|RHLB_PECCP ATP-dependent RNA helicase RhlB OS=Pectobacterium 
carotovorum subsp. carotovorum (strain PC1) OX=561230 
GN=rhlB PE=3 SV=1
Length=430

 Score = 300 bits (768),  Expect = 2e-93, Method: Composition-based stats.
 Identities = 112/453 (25%), Positives = 185/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++++       ++   L                    ++   G  +   
Sbjct  13   DFALHPQVIEALESKGFHNCTPIQALALPLALS--------GRDVAGQAQTGTGKTLAFL  64

Query  271  HSG----NAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S      +     +   N P+ALI+ P+RELA Q  ++ +          L+  L  GG
Sbjct  65   ASTFHYLLSHPANAERQTNQPRALIMAPTRELAVQIHSDAEALSHLTG---LKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLENGVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLENGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +V+++ E      +   + 
Sbjct  182  LFRRMPPAA----QRLNMLFSATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         ++E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------LEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+ IIF  TK  C+++  +    G              L GD    +R + LE F +G+
Sbjct  256  PDRCIIFANTKHRCEDIWGHLAADG---------HRVGLLTGDVAQKKRLRILEEFTQGN  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA + G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGQSGFSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + +  G     ++   D          +L
Sbjct  367  NLPAIETYIGHSIPVSKYNSDALMNDLPAPKRL  399


 Score = 102 bits (255),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 54/354 (15%), Positives = 119/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E   +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPQVIEALESKGFHNCTPIQALALPLALSGRDVAGQAQTGTGKTLAFLASTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +     + +  ++         +   +  +  +                +  +    G +
Sbjct  71   LLSHPANAE--RQTNQPRALIMAPTRELAVQIH--------------SDAEALSHLTGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLENGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPAAQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P + +I   ++
Sbjct  207  ELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLLEEEWPDRCIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                   +  +    ++     R  L+ G VA + +L +LE      +DI+V T
Sbjct  267  -------HRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTQGNLDILVAT  313


>sp|A1CJT5|IF4A_ASPCL ATP-dependent RNA helicase eIF4A OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / 
NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=tif1 PE=3 SV=1
Length=398

 Score = 299 bits (765),  Expect = 3e-93, Method: Composition-based stats.
 Identities = 112/426 (26%), Positives = 188/426 (44%), Gaps = 71/426 (17%)

Query  228  FPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN------AQVTQ  279
            F +  LK   L+  + +G E      +   + + K  D        +G       + + +
Sbjct  27   FDSMDLKPELLRGIYAYGFERPSAIQQRAIMPIIKGSDVIAQAQSGTGKTATFSISALQK  86

Query  280  TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
                  A +ALI+ P+RELA+Q    +     ++    L     IGG   R+ +  L++G
Sbjct  87   IDPNLKACQALILAPTRELAQQIQKVVVAIGDFMS---LECHACIGGTNVREDMKALQDG  143

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
              +VVGTPGR+ D++    L   Q++  +LDEAD +LS+G+++ I  +   +PQ T    
Sbjct  144  PQVVVGTPGRVQDMIQRRVLRTDQMKLFILDEADEMLSRGFTEQIYDIFQLLPQST----  199

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              QV++ SAT+   DV +++ K M  P  + +K ++   + +    + V  +  +L    
Sbjct  200  --QVVLLSATMP-QDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKL----  252

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
                                            L   Y    I      QA+IFC T+   
Sbjct  253  ------------------------------DTLSDLYETVTIT-----QAVIFCNTRRKV  277

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            D L                 F+   +HGD +  +R   ++ F+ G  R LI TD+ ARGI
Sbjct  278  DWLTDKLT---------ARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIATDLLARGI  328

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCY  639
            D+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V  +  ++   +     +  Y
Sbjct  329  DVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREI-----EQFY  383

Query  640  NTRLKE  645
            +T+++E
Sbjct  384  STQIEE  389


 Score = 96.4 bits (238),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 40/77 (52%), Gaps = 0/77 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F  M + PE+ + +    +  P+ IQ  +I  I+ G DV+  A++G+GKT  FSI  +Q
Sbjct  26   SFDSMDLKPELLRGIYAYGFERPSAIQQRAIMPIIKGSDVIAQAQSGTGKTATFSISALQ  85

Query  63   IVYETLKDQQEGKKGKT  79
             +   LK  Q      T
Sbjct  86   KIDPNLKACQALILAPT  102


>sp|Q10202|DBP3_SCHPO ATP-dependent RNA helicase dbp3 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp3 
PE=3 SV=1
Length=578

 Score = 305 bits (781),  Expect = 3e-93, Method: Composition-based stats.
 Identities = 102/388 (26%), Positives = 167/388 (43%), Gaps = 55/388 (14%)

Query  252  KDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKK  311
                V +++   G  V         +       + P+ L+V P+RELA QT  N+     
Sbjct  202  GRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSL--  259

Query  312  YIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDE  371
             I    L+ +++ GG    +Q    +N   +++GTPGRL DL++ G ++ SQV +LVLDE
Sbjct  260  -IQGTNLKAVVVYGGAPKSEQARAAKN-ASVIIGTPGRLLDLINDGSIDCSQVGYLVLDE  317

Query  372  ADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL  431
            AD +L  G+   I  + +  P  T +G   Q +  SAT     V+ L+   +  P  + +
Sbjct  318  ADRMLDTGFEQDIRNIISHTPDPTRNGS-RQTVFFSATWP-ESVRALAATFLKDPVKITI  375

Query  432  KGED-SVPDTVHHVVVPVNP--KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEA  488
              ++ +    +  +V  ++     +R+ + L + H+ +                      
Sbjct  376  GSDELAASQNITQIVEILDDPRSKERMLDNLLRKHLSSGG--------------------  415

Query  489  IKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGD  548
                            K D+ +IF   K +   +E               +++ V +HGD
Sbjct  416  ----------------KDDKILIFVLYKKEAARVEGTL----------ARKYNVVGIHGD  449

Query  549  RKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
                 R Q L  FK G    L+ TDVAARG+DI  V  VINVT P   ++YVHRIGR GR
Sbjct  450  MSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGR  509

Query  609  AERMGLAISLVATEKEKVWYHVCSSRGK  636
            A   G AI+    + +     + +   +
Sbjct  510  ANTKGTAITFFTPQDKSHAGELVNVLRQ  537


 Score = 96.7 bits (239),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 18/139 (13%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E+ V  ++ + ++  ++  PT IQA + P +L G DV+  AETGSGKT AF IP 
Sbjct  166  ILQFDELDVSAKLREGLK--NYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPA  223

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC---------  111
            +Q +     ++              S   +  +  Y+  ++   G++             
Sbjct  224  LQYLNGLSDNK------SVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKS  277

Query  112  -QSREVKEWHGCRATKGLM  129
             Q+R  K       T G +
Sbjct  278  EQARAAKNASVIIGTPGRL  296


>sp|Q0ILZ4|RH9_ORYSJ DEAD-box ATP-dependent RNA helicase 9 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os12g0611200 PE=2 SV=1
Length=628

 Score = 306 bits (784),  Expect = 3e-93, Method: Composition-based stats.
 Identities = 118/433 (27%), Positives = 198/433 (46%), Gaps = 71/433 (16%)

Query  212  LGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQH  271
            LG++ +I   + ++ +     ++ A L+                V  +K   G  +    
Sbjct  103  LGISPKIVSQLASRGITKLFPIQRAVLE--------PAMQGKDMVGRAKTGTGKTLAFGI  154

Query  272  SGNAQVTQTKFLPNA---PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
                 + +     +    P A+++ P+RELA+Q          + D+  +  + + GG  
Sbjct  155  PILDAIIRHNEKNSPGKFPLAIVLAPTRELAKQVERE------FSDSSNVETICVYGGTP  208

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
               Q+  L  GVD+V+GTPGR+ DL+  G LNLS+VRF+VLDEAD +LS G+ + +  + 
Sbjct  209  ISQQIRQLNYGVDVVIGTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETIL  268

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
            +++P       + Q ++ SAT+ ++ +++L++K +  P  +DL GED             
Sbjct  269  DRVP------PKRQTLMFSATMPTW-IQRLTQKYLKNPVTIDLVGED-------------  308

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
                 +L E +    I ++          G   P +  E IK           +  K  +
Sbjct  309  ---DQKLAEGISLYSIASE----------GHAKPAVLGELIK-----------EHAKGGK  344

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
             I+F +TK D D L              G  F C  LHGD    +R++ L+ F++G    
Sbjct  345  CIVFTQTKRDADRLSYTM----------GRSFQCQALHGDITQAQRERTLKGFREGHFNI  394

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            LI TDVAARG+DI  V  VI+  LP+  + +VHR GR GRA + G AI + + ++ +   
Sbjct  395  LIATDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAIVMHSYQQSRAIR  454

Query  629  HVCSSRGKGCYNT  641
             V +  G      
Sbjct  455  MVENDVGCKFTEL  467


 Score = 85.2 bits (209),  Expect = 8e-16, Method: Composition-based stats.
 Identities = 53/346 (15%), Positives = 105/346 (30%), Gaps = 56/346 (16%)

Query  7    MGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYE  66
            +G+ P+I   +          IQ   +   + G D++  A+TG+GKT AF IP++  +  
Sbjct  103  LGISPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDAIIR  162

Query  67   TLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATK  126
              +    GK     +    +   +         S  +   + +C            +   
Sbjct  163  HNEKNSPGKFPLAIV---LAPTRELAKQVEREFSD-SSNVETICVYGGTPISQQIRQLNY  218

Query  127  GLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEF  186
            G+       +V     G  RV     + +L+L   +  F       +  +  FD      
Sbjct  219  GV-------DVVIGTPG--RVIDLLKRGALNL--SEVRFVVLDEADQMLSVGFD------  261

Query  187  TMHDTIGCYLDID--KGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGE  244
               D       +   +  + FS             P    +       LKN       GE
Sbjct  262  --EDVETILDRVPPKRQTLMFS----------ATMPTWIQRLTQKY--LKNPVTIDLVGE  307

Query  245  EEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLN  304
            ++ K         L++    Y + S+      V       +A     +  +     QT  
Sbjct  308  DDQK---------LAEGISLYSIASEGHAKPAVLGELIKEHAKGGKCIVFT-----QTKR  353

Query  305  NIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE----NGVDIVVGT  346
            +  +   Y      +   + G +    +   L+       +I++ T
Sbjct  354  DADRLS-YTMGRSFQCQALHGDITQAQRERTLKGFREGHFNILIAT  398


>sp|Q4WT99|PRP5_ASPFU Pre-mRNA-processing ATP-dependent RNA helicase 
prp5 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / 
CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=prp5 PE=3 SV=1
Length=1211

 Score = 318 bits (816),  Expect = 3e-93, Method: Composition-based stats.
 Identities = 112/510 (22%), Positives = 207/510 (41%), Gaps = 102/510 (20%)

Query  195  YLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDG  254
             +D+ K  +K+S      GL  +    ++         +++  +                
Sbjct  567  GVDVPKPVMKWS----QCGLGVQTLDVIQKLGYENPTSIQSQAIPAIMS--------GRD  614

Query  255  FVALSKAPDGYIVKSQHSGNAQVTQTKFLPN--APKALIVEPSRELAEQTLNNIKQFKKY  312
             + ++K   G  +         +   + L N   P  LI+ P+RELA Q   + K F K 
Sbjct  615  VIGVAKTGSGKTIAFLIPMFRHIRDQRPLENMEGPIGLIMTPTRELATQIHKDCKPFLKA  674

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVL  369
            ++   LR +   GG   +DQ++ L+ G +IVV TPGR+ DL++       NL +V ++VL
Sbjct  675  LN---LRAVCAYGGAPIKDQIAELKRGAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVL  731

Query  370  DEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWV  429
            DEAD +   G+   + ++   I          Q ++ SAT    +++ L+ K +  P  +
Sbjct  732  DEADRMFDMGFEPQVMKIMANI------RPDRQTVLFSATFP-RNMEALARKSLTKPIEI  784

Query  430  DLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAI  489
             + G+  V   +  +V   N  T                                  + +
Sbjct  785  VVGGKSVVAPEITQIVEVRNEDT----------------------------------KFV  810

Query  490  KILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDR  549
            ++L+    + +   ++  +A+IF   +   D L +  +++G         + C+ +HG +
Sbjct  811  RLLEILGNLYSDDANEDARALIFVDRQEAADTLLRELMRKG---------YPCMSIHGGK  861

Query  550  KPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA  609
               +R   +E FK G    LI T VAARG+D+  +  V+N   P+  ++YVHR GR GRA
Sbjct  862  DQIDRDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRA  921

Query  610  ERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCT  669
               G A++ +  E+E+    +  +                                L  +
Sbjct  922  GNTGTAVTFLTEEQERYSVDIAKA--------------------------------LRQS  949

Query  670  ISQVEPDIKVPVDEFDGKVTYGQKRAAGGG  699
              +V   ++  VD F  KV  G+++A+  G
Sbjct  950  GQKVPEPVQKMVDSFLEKVKAGKEKASASG  979


 Score = 106 bits (265),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 26/97 (27%), Positives = 52/97 (54%), Gaps = 4/97 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  +S+ G+  +    ++++ +  PT IQ+++IP I+ G DV+  A+TGSGKT AF IP+
Sbjct  574  VMKWSQCGLGVQTLDVIQKLGYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLIPM  633

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYD  97
             + +    +DQ+  +  +  I    +   +     + 
Sbjct  634  FRHI----RDQRPLENMEGPIGLIMTPTRELATQIHK  666


>sp|B1KQF6|RHLB_SHEWM ATP-dependent RNA helicase RhlB OS=Shewanella 
woodyi (strain ATCC 51908 / MS32) OX=392500 GN=rhlB PE=3 
SV=1
Length=441

 Score = 300 bits (769),  Expect = 3e-93, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 187/453 (41%), Gaps = 73/453 (16%)

Query  221  HMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVAL----------SKAPDGYIVKSQ  270
            H+ NQ      + K  +   N    EF  P +   + +          ++   G  +   
Sbjct  5    HLSNQKFADFSLNKEIKTALNESGFEFCTPIQALSLPILLQKKDIAGQAQTGTGKTLAFL  64

Query  271  HSGNAQVTQTKF----LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             +    +  T        N P+A+I+ P+RELA Q   +     K+     L+  ++ GG
Sbjct  65   VATFDHLLSTPVPEGRQLNQPRAMIMAPTRELAIQIAKDATLLAKHTG---LKVGIVYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
             +   Q  VL+ GVDI++GT GR+ D V  G +NLS ++ +VLDEAD +   G+   I  
Sbjct  122  ESYDVQRKVLDKGVDILIGTTGRIIDYVRQGIINLSAIQAVVLDEADRMFDLGFIKDIRF  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P    D K    ++ SATL S  V++L+   M+ P  V +   +     +   + 
Sbjct  182  LFRRMP----DAKSRLNMLFSATL-SMKVQELAYDHMNEPEKVVIAPNEKTSKNIKEEIF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P   +  RL                                          +  I+E  
Sbjct  237  YPSMDEKMRL-----------------------------------------LLSLIEEDW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             ++AI+F  TK  C+N+  +          +G       L GD    +R + LE+F +G 
Sbjct  256  PEKAIVFSNTKHSCENVWSWL---------EGDGHRVGLLTGDVPQKKRIRILEQFTEGK  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA + G+++S    E   
Sbjct  307  LDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGKKGVSVSFACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                +          T    +G        +++
Sbjct  367  NLPAIEEYITHSIPVTNYDSEGLLDDIPAPIRV  399


 Score = 101 bits (252),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 61/353 (17%), Positives = 120/353 (34%), Gaps = 60/353 (17%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F++  +  EI  A+ E  +   T IQA S+P++L   D+   A+TG+GKT AF +     
Sbjct  11   FADFSLNKEIKTALNESGFEFCTPIQALSLPILLQKKDIAGQAQTGTGKTLAFLVATFDH  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +  T     EG++         +   +  +    + +       GL              
Sbjct  71   LLSTP--VPEGRQLNQPRAMIMAPTRELAIQI-AKDATLLAKHTGLKV------------  115

Query  124  ATKGLMKGKHYYEV--SCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDN  181
               G++ G   Y+V     D+G+           + +GT                 +  +
Sbjct  116  ---GIVYGGESYDVQRKVLDKGV----------DILIGTT---------------GRIID  147

Query  182  YGEEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFEIPPHMK---NQALFPACVLKNAE  237
            Y  +  ++ +    + +D+    F     KD+   F   P  K   N        +K  E
Sbjct  148  YVRQGIINLSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAKSRLNMLFSATLSMKVQE  207

Query  238  LKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRE  297
            L ++   E  K              +     S       +          KA++   ++ 
Sbjct  208  LAYDHMNEPEKVVIAPNEKTSKNIKEEIFYPSMDEKMRLLLSLIEEDWPEKAIVFSNTK-  266

Query  298  LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                  ++ +    +++    R  L+ G V  + ++ +LE      +DI+V T
Sbjct  267  ------HSCENVWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTEGKLDILVAT  313


>sp|Q755A5|DBP3_EREGS ATP-dependent RNA helicase DBP3 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DBP3 PE=3 SV=1
Length=535

 Score = 303 bits (777),  Expect = 3e-93, Method: Composition-based stats.
 Identities = 121/487 (25%), Positives = 196/487 (40%), Gaps = 86/487 (18%)

Query  204  KFSKNGKDLGLAFEIPPHMKNQALFPACVLK-NAELKFNFGEEEFKFPPK----------  252
             FS+N     +A E P  +  + L     L  ++ ++    +     P +          
Sbjct  105  FFSEN----EVAVEDPESLGFRPLLSFSHLNLHSAIQKEISKFPKPTPIQAVSWPYLLAG  160

Query  253  DGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKY  312
               + +++   G            +   K  P   K L++ P+RELA Q  +N+ Q    
Sbjct  161  KDVIGVAETGSGKTFAFGVPAINSLMSEKSTPRGVKCLVISPTRELASQIYDNLVQL---  217

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
             D   L    + GGV    Q   L+    +VV TPGRL DL+  G   L+ V++LVLDEA
Sbjct  218  TDKVGLNCCCVYGGVQKDSQREQLKK-AQVVVATPGRLLDLIEEGSAKLAGVQYLVLDEA  276

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D +L +G+ + I R+  +     +     Q ++ +AT    +V++L+   M  P  V + 
Sbjct  277  DRMLEKGFEEDIKRIIKE-----TKSDVRQTLMFTATWPK-EVRELASTFMRAPVKVSIG  330

Query  433  GED--SVPDTVHHVVVPVNP--KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEA  488
              D  S    +  VV  ++P  K  RL E L +                           
Sbjct  331  NRDELSANKRITQVVEVIDPFKKEKRLLELLKQYQSGAK---------------------  369

Query  489  IKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGD  548
                            K D+ +IF   K +   +E+     G         ++   +HGD
Sbjct  370  ----------------KNDKVLIFALYKKEASRVERNLKYNG---------YNVAAIHGD  404

Query  549  RKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
                +R Q L  FK G    L+ TDVAARG+DI  V  VIN+T P   ++YVHRIGR GR
Sbjct  405  LSQQQRTQALSEFKAGTANLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGR  464

Query  609  AERMGLAISLVATEKEKVWYHVCSSRG-----------KGCYNTRLKEDGGCTIWYNEMQ  657
            A   G+A +L   +++ +   + +              K   +T+ KE      +Y  + 
Sbjct  465  AGATGVAHTLFTEQEKHLAGALVNVLNGAGQPVPEELMKFGTHTKRKEHNAYGAFYKNVD  524

Query  658  LLSEIEE  664
            L  + ++
Sbjct  525  LTKKAKK  531


 Score = 99.0 bits (245),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 37/139 (27%), Positives = 55/139 (40%), Gaps = 18/139 (13%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +FS + +   I + + +  +  PT IQA S P +L G DV+  AETGSGKT AF +P 
Sbjct  124  LLSFSHLNLHSAIQKEISK--FPKPTPIQAVSWPYLLAGKDVIGVAETGSGKTFAFGVPA  181

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD-GLCC--------  111
            I  +        E    +       S   +     YD             CC        
Sbjct  182  INSLMS------EKSTPRGVKCLVISPTRELASQIYDNLVQLTDKVGLNCCCVYGGVQKD  235

Query  112  -QSREVKEWHGCRATKGLM  129
             Q  ++K+     AT G +
Sbjct  236  SQREQLKKAQVVVATPGRL  254


>sp|Q5AAW3|DHH1_CANAL ATP-dependent RNA helicase DHH1 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DHH1 
PE=3 SV=1
Length=549

 Score = 304 bits (778),  Expect = 3e-93, Method: Composition-based stats.
 Identities = 112/498 (22%), Positives = 188/498 (38%), Gaps = 91/498 (18%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K+ +D  L  E+   +          ++   +               G   L++A +G  
Sbjct  30   KSFEDFNLKRELLMGIFEAGFEKPSPIQEESIPMAL----------AGRDILARAKNG-T  78

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             K+       +   K   N  +ALI+ P+RELA QT   ++   K++     + ++  GG
Sbjct  79   GKTASFIIPCLQLVKPKLNKVQALILVPTRELALQTSQVVRTLGKHVGT---QCMVTTGG  135

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
             + RD +  L + V I+VGTPGR+ DL +   ++LS+    V+DEAD +LS+ +   I +
Sbjct  136  TSLRDDIVRLHDPVHILVGTPGRVLDLAARKVVDLSECPLFVMDEADKMLSREFKGIIEQ  195

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVV  446
            +    P         Q ++ SAT     VK   +K +  P  ++L  E ++   +     
Sbjct  196  ILEFFP------PNRQALLFSATFP-LAVKSFMDKHLTKPYEINLMDELTLK-GISQFYA  247

Query  447  PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM  506
             V  K                                         K         + ++
Sbjct  248  FVEEKQ----------------------------------------KLHCLNTLFSKLQI  267

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
            +Q+IIFC +    + L +   + G         +SC   H       R +    F++G V
Sbjct  268  NQSIIFCNSTNRVELLAKKITELG---------YSCYYSHAKMPQQARNKVFHEFRQGKV  318

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
            R L+C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR   +GLAI+L++      
Sbjct  319  RNLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYS  378

Query  627  WYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDG  686
             Y +    G                      + + I++ L    +         +DE   
Sbjct  379  LYKIEQELGT-----------------EIKPIPATIDKSLYVAENADAVPRPFRIDELPK  421

Query  687  KVTYGQKRAAGGGSYKGH  704
                   +   G  YKG 
Sbjct  422  GNETVHNK---GYQYKGQ  436


 Score = 101 bits (252),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 26/93 (28%), Positives = 42/93 (45%), Gaps = 9/93 (10%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +F +  +  E+   + E  +  P+ IQ ESIP+ L G D+L  A+ G+GKT +F IP +
Sbjct  30   KSFEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCL  89

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
            Q+V   L   Q                 +  + 
Sbjct  90   QLVKPKLNKVQ---------ALILVPTRELALQ  113


>sp|A5E1W4|DBP3_LODEL ATP-dependent RNA helicase DBP3 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP3 PE=3 SV=2
Length=535

 Score = 303 bits (776),  Expect = 4e-93, Method: Composition-based stats.
 Identities = 106/432 (25%), Positives = 188/432 (44%), Gaps = 68/432 (16%)

Query  246  EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNN  305
             F    KD  V +++   G            +  +K        L + P+RELA Q  +N
Sbjct  158  PFLLDGKD-VVGVAETGSGKTFAFGVPAINNIITSKNKD--LSVLCISPTRELALQIYDN  214

Query  306  IKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVR  365
            ++   +      +  + I GGV+  DQ+  + NG ++VV TPGRL DL++ G ++LS + 
Sbjct  215  LEDLTR---GTDVSCVAIYGGVSKDDQIKKIRNGANVVVATPGRLVDLINDGAVDLSSIN  271

Query  366  FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF  425
            +LVLDEAD +L +G+ + I  +    P      +  Q ++ +AT    +V++L+   M+ 
Sbjct  272  YLVLDEADRMLEKGFEEDIKLIIGSTP-----AQGRQTLMFTATWPK-EVRELANNFMNQ  325

Query  426  PTWVDLKGED--SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPE  483
            P  V +   D  S    +  +V  ++ K  +                             
Sbjct  326  PVKVTIGDRDELSANKRITQIVEVLDDKFQK-----------------------------  356

Query  484  MWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCV  543
                  K L           +  ++ ++F   K +   +E    +         ++F   
Sbjct  357  -----EKKLINLLQKYQNTGNGDNKILVFALYKKEASRIESLLHR---------NKFKVA  402

Query  544  CLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI  603
             +HGD    +R Q L+ FK G+   L+ TDVAARG+DI  V YVIN+T P   ++YVHR+
Sbjct  403  AIHGDLSQQQRTQALQSFKSGECNLLLATDVAARGLDIPNVKYVINLTFPLTIEDYVHRL  462

Query  604  GRVGRAERMGLAISLVATEKEKVWYHVCS-----------SRGKGCYNTRLKEDGGCTIW  652
            GR GRA + G+A +    +++ +   +C+           +  K   +T+ K       +
Sbjct  463  GRTGRAGQTGIAHTFFTEDEKHLSGALCNILRGANQPVPEALLKYGGHTKKKTHSVYGAF  522

Query  653  YNEMQLLSEIEE  664
            Y ++ +  + +E
Sbjct  523  YKDVDMPIDSKE  534


 Score = 94.4 bits (233),  Expect = 7e-19, Method: Composition-based stats.
 Identities = 31/111 (28%), Positives = 51/111 (46%), Gaps = 10/111 (9%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F ++ +  +++  + +  +  PT IQ+ S P +L G DV+  AETGSGKT AF +P 
Sbjct  127  ILSFDQIKLQKDVSSKLTK--FPKPTPIQSVSWPFLLDGKDVVGVAETGSGKTFAFGVPA  184

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
            I  +  +        K K       S   +  +  YD       G+D  C 
Sbjct  185  INNIITS--------KNKDLSVLCISPTRELALQIYDNLEDLTRGTDVSCV  227


>sp|Q9BUQ8|DDX23_HUMAN Probable ATP-dependent RNA helicase DDX23 
OS=Homo sapiens OX=9606 GN=DDX23 PE=1 SV=3
Length=820

 Score = 311 bits (797),  Expect = 4e-93, Method: Composition-based stats.
 Identities = 93/413 (23%), Positives = 165/413 (40%), Gaps = 79/413 (19%)

Query  251  PKDGFVALSKAPDGYIVKS------QHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLN  304
                 + +++   G             +   ++ + +     P A+I+ P+RELA+Q   
Sbjct  427  QNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEE  486

Query  305  NIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQV  364
               +F K +    +R + +IGG++  DQ   L  G +IV+ TPGRL D++    L LS+ 
Sbjct  487  ETIKFGKPLG---IRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRC  543

Query  365  RFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG--------------------KRLQVI  404
             ++VLDEAD ++  G+   + ++   +P                          K  Q +
Sbjct  544  TYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTV  603

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + +AT+    V++L+   +  P  V +       + V   V  ++    R          
Sbjct  604  MFTATMPPA-VERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKR----------  652

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                                          +  +  +++      IIF   K  CD L +
Sbjct  653  ------------------------------KKLLAILEQGFDPPIIIFVNQKKGCDVLAK  682

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
               + G         ++   LHG +   +R+  L   K G    L+ TDVA RGIDI  V
Sbjct  683  SLEKMG---------YNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDV  733

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
              V+N  +    ++Y+HRIGR GRA + G+AI+ +  E   V+Y +  +  + 
Sbjct  734  SMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILES  786


 Score = 109 bits (271),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 0/104 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + ++ +  + P I + +++  +  PT IQ ++IP+ L   D++  AETGSGKT AF IP+
Sbjct  390  IRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPL  449

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            +  +    K  +  +  +       +   +      +    F  
Sbjct  450  LVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGK  493


>sp|A9L5D5|RHLB_SHEB9 ATP-dependent RNA helicase RhlB OS=Shewanella 
baltica (strain OS195) OX=399599 GN=rhlB PE=3 SV=1
Length=438

 Score = 300 bits (768),  Expect = 4e-93, Method: Composition-based stats.
 Identities = 118/507 (23%), Positives = 196/507 (39%), Gaps = 87/507 (17%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
            ++   DL L  E+   +          ++   L                    ++   G 
Sbjct  8    TQRFADLPLHPEVKQALAENGFEFCTPIQALSLPVLL--------QSKDIAGQAQTGTGK  59

Query  266  IVKSQHSGNAQVTQTKFLP-----NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRE  320
             +            +  +P     N P+A+I+ P+RELA Q   +     K+     L+ 
Sbjct  60   TMAFLV-ATFNHLLSTPVPEGRLINQPRAIIMAPTRELAIQIAKDAILLAKHTH---LKV  115

Query  321  LLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGY  380
             ++ GG +   Q  VL+ GVDI++GT GR+ D V  G + L+ ++ +VLDEAD +   G+
Sbjct  116  GIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFDLGF  175

Query  381  SDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDT  440
               I  +  ++P+      +   ++ SATL S  V++L+   M+ P  V++  E+     
Sbjct  176  IKDIRFLFRRMPEAN----QRLNMLFSATL-SMKVQELAYDHMNEPVKVEIAPEEKTSKN  230

Query  441  VH-HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVR  499
            +   +  P   +  RL                                          + 
Sbjct  231  IKEEIFYPSQEEKMRL-----------------------------------------LLT  249

Query  500  AIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLE  559
             I+E   ++AI+F  TK  C+ L  +          +G       L GD    +R + LE
Sbjct  250  LIEEDWPEKAIVFSNTKHSCETLWSWL---------EGDGHRVGLLTGDVPQKKRIRILE  300

Query  560  RFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +F  G +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G++IS  
Sbjct  301  QFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGMSISFA  360

Query  620  ATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKV  679
              E       + S                    Y+   LL++I       I +  P    
Sbjct  361  CEEYALNLPAIESYIN----------HSIPVSNYDSEALLADIPTP--AKIHRKHPSGTR  408

Query  680  PVDEFDGKVTYGQKRAAGGGSYKGHVD  706
             + +  G    G +R+  G     H  
Sbjct  409  NLRDRSGASRPGAQRS--GARPPRHDR  433


 Score = 104 bits (260),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 63/353 (18%), Positives = 117/353 (33%), Gaps = 60/353 (17%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+++ + PE+ QA+ E  +   T IQA S+P++L   D+   A+TG+GKT AF +     
Sbjct  11   FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNH  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +  T     EG+          +   +  +    + +        L              
Sbjct  71   LLSTP--VPEGRLINQPRAIIMAPTRELAIQI-AKDAILLAKHTHLKV------------  115

Query  124  ATKGLMKGKHYYEV--SCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDN  181
               G++ G   Y+V     DQG+           + +GT      +   G    N     
Sbjct  116  ---GIVYGGESYDVQRKVLDQGV----------DILIGTTGRIIDYVRQGIIGLN-----  157

Query  182  YGEEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFEIPPHM---KNQALFPACVLKNAE  237
                          + +D+    F     KD+   F   P      N        +K  E
Sbjct  158  ---SIQA-------VVLDEADRMFDLGFIKDIRFLFRRMPEANQRLNMLFSATLSMKVQE  207

Query  238  LKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRE  297
            L ++   E  K              +     SQ      +          KA++   ++ 
Sbjct  208  LAYDHMNEPVKVEIAPEEKTSKNIKEEIFYPSQEEKMRLLLTLIEEDWPEKAIVFSNTK-  266

Query  298  LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                  ++ +    +++    R  L+ G V  + ++ +LE      +DI+V T
Sbjct  267  ------HSCETLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVAT  313


>sp|A6WTD3|RHLB_SHEB8 ATP-dependent RNA helicase RhlB OS=Shewanella 
baltica (strain OS185) OX=402882 GN=rhlB PE=3 SV=1
Length=438

 Score = 300 bits (768),  Expect = 4e-93, Method: Composition-based stats.
 Identities = 118/507 (23%), Positives = 196/507 (39%), Gaps = 87/507 (17%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
            ++   DL L  E+   +          ++   L                    ++   G 
Sbjct  8    TQRFADLPLHPEVKQALAENGFEFCTPIQALSLPVLL--------QSKDIAGQAQTGTGK  59

Query  266  IVKSQHSGNAQVTQTKFLP-----NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRE  320
             +            +  +P     N P+A+I+ P+RELA Q   +     K+     L+ 
Sbjct  60   TMAFLV-ATFNHLLSTPVPEGRLINQPRAIIMAPTRELAIQIAKDAILLAKHTH---LKV  115

Query  321  LLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGY  380
             ++ GG +   Q  VL+ GVDI++GT GR+ D V  G + L+ ++ +VLDEAD +   G+
Sbjct  116  GIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFDLGF  175

Query  381  SDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDT  440
               I  +  ++P+      +   ++ SATL S  V++L+   M+ P  V++  E+     
Sbjct  176  IKDIRFLFRRMPEAN----QRLNMLFSATL-SMKVQELAYDHMNEPVKVEIAPEEKTSKN  230

Query  441  VH-HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVR  499
            +   +  P   +  RL                                          + 
Sbjct  231  IKEEIFYPSQEEKMRL-----------------------------------------LLT  249

Query  500  AIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLE  559
             I+E   ++AI+F  TK  C+ L  +          +G       L GD    +R + LE
Sbjct  250  LIEEDWPEKAIVFSNTKHSCETLWSWL---------EGDGHRVGLLTGDVPQKKRIRILE  300

Query  560  RFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +F  G +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G++IS  
Sbjct  301  QFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGMSISFA  360

Query  620  ATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKV  679
              E       + S                    Y+   LL++I       I +  P    
Sbjct  361  CEEYALNLPAIESYIN----------HSIPVSNYDSEALLADIPTP--AKIHRKHPSGTR  408

Query  680  PVDEFDGKVTYGQKRAAGGGSYKGHVD  706
             + +  G    G +R+  G     H  
Sbjct  409  NLRDRSGASRPGAQRS--GARPPRHDR  433


 Score = 104 bits (260),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 63/353 (18%), Positives = 117/353 (33%), Gaps = 60/353 (17%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+++ + PE+ QA+ E  +   T IQA S+P++L   D+   A+TG+GKT AF +     
Sbjct  11   FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNH  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +  T     EG+          +   +  +    + +        L              
Sbjct  71   LLSTP--VPEGRLINQPRAIIMAPTRELAIQI-AKDAILLAKHTHLKV------------  115

Query  124  ATKGLMKGKHYYEV--SCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDN  181
               G++ G   Y+V     DQG+           + +GT      +   G    N     
Sbjct  116  ---GIVYGGESYDVQRKVLDQGV----------DILIGTTGRIIDYVRQGIIGLN-----  157

Query  182  YGEEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFEIPPHM---KNQALFPACVLKNAE  237
                          + +D+    F     KD+   F   P      N        +K  E
Sbjct  158  ---SIQA-------VVLDEADRMFDLGFIKDIRFLFRRMPEANQRLNMLFSATLSMKVQE  207

Query  238  LKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRE  297
            L ++   E  K              +     SQ      +          KA++   ++ 
Sbjct  208  LAYDHMNEPVKVEIAPEEKTSKNIKEEIFYPSQEEKMRLLLTLIEEDWPEKAIVFSNTK-  266

Query  298  LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                  ++ +    +++    R  L+ G V  + ++ +LE      +DI+V T
Sbjct  267  ------HSCETLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVAT  313


>sp|P33906|DEAD_KLEPN ATP-dependent RNA helicase DeaD OS=Klebsiella 
pneumoniae OX=573 GN=deaD PE=3 SV=3
Length=643

 Score = 307 bits (785),  Expect = 4e-93, Method: Composition-based stats.
 Identities = 111/472 (24%), Positives = 186/472 (39%), Gaps = 74/472 (16%)

Query  205  FSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDG  264
            F     DLGL   I   + +        ++   +                 + +++   G
Sbjct  4    FETTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLD--------GRDVLGMAQTGSG  55

Query  265  YIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
                        +        AP+ L++ P+RELA Q    + +F K++    +  + + 
Sbjct  56   KTAAFSL---PLLNNIDPELRAPQILVLAPTRELAVQVAEAMTEFSKHMRG--VNVVALY  110

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG     QL  L  G  IVVGTPGRL D +  G L+LS++  LVLDEAD +L  G+ + +
Sbjct  111  GGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDV  170

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
              +  QIP      +  Q  + SAT+    +++++ + M  P  V ++   +    +   
Sbjct  171  ETIMAQIP------EGHQTALFSATMPEA-IRRITRRFMKEPQEVRIQSSVTTRPDISQS  223

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
                                                       A  + K E  VR ++  
Sbjct  224  Y----------------------------------------WTAYGMRKNEALVRFLEAE  243

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
              D AIIF RTK     + +   + G         ++   L+GD     R+Q LER K G
Sbjct  244  DFDAAIIFVRTKNATLEVAEALERNG---------YNSAALNGDMNQALREQALERLKDG  294

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
             +  LI TDVAARG+D+  +  V+N  +P + ++YVHRIGR GRA R G A+  V   + 
Sbjct  295  RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRER  354

Query  625  KVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPD  676
            ++  ++  +         + E           + L +    +   +   + D
Sbjct  355  RLLRNIERT-----MKLTIPEVELPNAELLSKRRLEKFAAKVQQQLESSDLD  401


 Score = 112 bits (279),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 31/108 (29%), Positives = 55/108 (51%), Gaps = 9/108 (8%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F+++G+   I +A+ ++ +  P+ IQAE IP +L G DVL  A+TGSGKT AFS+P++
Sbjct  6    TTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLL  65

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGL  109
              +   L+  Q             +   +  +   +  + F+    G+
Sbjct  66   NNIDPELRAPQ---------ILVLAPTRELAVQVAEAMTEFSKHMRGV  104


>sp|A1RFB3|RHLB_SHESW ATP-dependent RNA helicase RhlB OS=Shewanella 
sp. (strain W3-18-1) OX=351745 GN=rhlB PE=3 SV=1
Length=439

 Score = 300 bits (768),  Expect = 4e-93, Method: Composition-based stats.
 Identities = 108/461 (23%), Positives = 184/461 (40%), Gaps = 71/461 (15%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
            ++   DL L  E+   +          ++   L                    ++   G 
Sbjct  8    TQKFADLPLHPEVKQALAENGFEFCTPIQALSLPVLL--------QSKDIAGQAQTGTGK  59

Query  266  IVKSQHSGNAQVTQTKFLP-----NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRE  320
             +            +  +P     N P+A+I+ P+RELA Q   +     K+    +L+ 
Sbjct  60   TMAFLV-ATFNHLLSTPIPEGRQINQPRAIIMAPTRELAIQIAKDAILLAKH---TRLKV  115

Query  321  LLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGY  380
             ++ GG +   Q  VL+ GVDI++GT GR+ D V  G ++L+ ++ +VLDEAD +   G+
Sbjct  116  GIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIISLTAIQAVVLDEADRMFDLGF  175

Query  381  SDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDT  440
               I  +  ++P    D  +   ++ SATL S  V++L+   M+ P  VD+  ++     
Sbjct  176  IKDIRFLFRRMP----DANQRLNMLFSATL-SMKVQELAYDHMNDPVKVDIAPDEKTSKN  230

Query  441  VHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRA  500
            +   V   + +                                         K    +  
Sbjct  231  IKEEVFYPSQED----------------------------------------KMRLLLTL  250

Query  501  IKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLER  560
            I+E   ++AI+F  TK  C+NL  +          +G       L GD    +R + LE+
Sbjct  251  IEEDWPEKAIVFSNTKHSCENLWSWL---------EGDGHRVGLLTGDVPQKKRIRILEQ  301

Query  561  FKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            F  G +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G++IS   
Sbjct  302  FTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSISFAC  361

Query  621  TEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE  661
             E       + S        +              +++  +
Sbjct  362  EEYALNLPAIESYINHSIPVSNYDSSALLEDIPAPVKIPRK  402


 Score = 105 bits (262),  Expect = 8e-23, Method: Composition-based stats.
 Identities = 63/353 (18%), Positives = 121/353 (34%), Gaps = 60/353 (17%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+++ + PE+ QA+ E  +   T IQA S+P++L   D+   A+TG+GKT AF +     
Sbjct  11   FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNH  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +  T     EG++         +   +  +         A  +                R
Sbjct  71   LLSTP--IPEGRQINQPRAIIMAPTRELAIQIAKDAILLAKHT----------------R  112

Query  124  ATKGLMKGKHYYEV--SCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDN  181
               G++ G   Y+V     DQG+           + +GT                 +  +
Sbjct  113  LKVGIVYGGESYDVQRKVLDQGV----------DILIGTT---------------GRIID  147

Query  182  YGEEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFEIPPHM---KNQALFPACVLKNAE  237
            Y  +  +  T    + +D+    F     KD+   F   P      N        +K  E
Sbjct  148  YVRQGIISLTAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDANQRLNMLFSATLSMKVQE  207

Query  238  LKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRE  297
            L ++   +  K              +     SQ      +          KA++   ++ 
Sbjct  208  LAYDHMNDPVKVDIAPDEKTSKNIKEEVFYPSQEDKMRLLLTLIEEDWPEKAIVFSNTK-  266

Query  298  LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                  ++ +    +++    R  L+ G V  + ++ +LE      +DI+V T
Sbjct  267  ------HSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVAT  313


>sp|A4YB09|RHLB_SHEPC ATP-dependent RNA helicase RhlB OS=Shewanella 
putrefaciens (strain CN-32 / ATCC BAA-453) OX=319224 GN=rhlB 
PE=3 SV=1
Length=439

 Score = 300 bits (768),  Expect = 4e-93, Method: Composition-based stats.
 Identities = 108/461 (23%), Positives = 184/461 (40%), Gaps = 71/461 (15%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
            ++   DL L  E+   +          ++   L                    ++   G 
Sbjct  8    TQKFADLPLHPEVKQALAENGFEFCTPIQALSLPVLL--------QSKDIAGQAQTGTGK  59

Query  266  IVKSQHSGNAQVTQTKFLP-----NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRE  320
             +            +  +P     N P+A+I+ P+RELA Q   +     K+    +L+ 
Sbjct  60   TMAFLV-ATFNHLLSTPIPEGRQINQPRAIIMAPTRELAIQIAKDAILLAKH---TRLKV  115

Query  321  LLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGY  380
             ++ GG +   Q  VL+ GVDI++GT GR+ D V  G ++L+ ++ +VLDEAD +   G+
Sbjct  116  GIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIISLTAIQAVVLDEADRMFDLGF  175

Query  381  SDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDT  440
               I  +  ++P    D  +   ++ SATL S  V++L+   M+ P  VD+  ++     
Sbjct  176  IKDIRFLFRRMP----DANQRLNMLFSATL-SMKVQELAYDHMNDPVKVDIAPDEKTSKN  230

Query  441  VHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRA  500
            +   V   + +                                         K    +  
Sbjct  231  IKEEVFYPSQED----------------------------------------KMRLLLTL  250

Query  501  IKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLER  560
            I+E   ++AI+F  TK  C+NL  +          +G       L GD    +R + LE+
Sbjct  251  IEEDWPEKAIVFSNTKHSCENLWSWL---------EGDGHRVGLLTGDVPQKKRIRILEQ  301

Query  561  FKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            F  G +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G++IS   
Sbjct  302  FTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSISFAC  361

Query  621  TEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE  661
             E       + S        +              +++  +
Sbjct  362  EEYALNLPAIESYINHSIPVSNYDSSALLEDIPAPVKIPRK  402


 Score = 105 bits (262),  Expect = 8e-23, Method: Composition-based stats.
 Identities = 63/353 (18%), Positives = 121/353 (34%), Gaps = 60/353 (17%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+++ + PE+ QA+ E  +   T IQA S+P++L   D+   A+TG+GKT AF +     
Sbjct  11   FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNH  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +  T     EG++         +   +  +         A  +                R
Sbjct  71   LLSTP--IPEGRQINQPRAIIMAPTRELAIQIAKDAILLAKHT----------------R  112

Query  124  ATKGLMKGKHYYEV--SCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDN  181
               G++ G   Y+V     DQG+           + +GT                 +  +
Sbjct  113  LKVGIVYGGESYDVQRKVLDQGV----------DILIGTT---------------GRIID  147

Query  182  YGEEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFEIPPHM---KNQALFPACVLKNAE  237
            Y  +  +  T    + +D+    F     KD+   F   P      N        +K  E
Sbjct  148  YVRQGIISLTAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDANQRLNMLFSATLSMKVQE  207

Query  238  LKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRE  297
            L ++   +  K              +     SQ      +          KA++   ++ 
Sbjct  208  LAYDHMNDPVKVDIAPDEKTSKNIKEEVFYPSQEDKMRLLLTLIEEDWPEKAIVFSNTK-  266

Query  298  LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                  ++ +    +++    R  L+ G V  + ++ +LE      +DI+V T
Sbjct  267  ------HSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVAT  313


>sp|Q5HME0|CSHA_STAEQ DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) OX=176279 
GN=cshA PE=3 SV=1
Length=509

 Score = 302 bits (774),  Expect = 4e-93, Method: Composition-based stats.
 Identities = 99/480 (21%), Positives = 192/480 (40%), Gaps = 75/480 (16%)

Query  208  NGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIV  267
            N K+LG++ +    ++         ++   + +            D  +  ++   G   
Sbjct  3    NFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYAL--------EGDDILGQAQTGTGKTG  54

Query  268  KSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
                     + +        ++LI+ P+RELA Q    +++F K     K++ + + GG+
Sbjct  55   AF----GIPLIEKVVGQQGVQSLILAPTRELAMQVAEQLREFSK---GQKVQVVTVFGGM  107

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM  387
                Q+  L+ G  IVVGTPGR+ D ++   L    +  L+LDEAD +++ G+ D +  +
Sbjct  108  PIERQIKALKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFI  167

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
             ++IP      ++ Q ++ SAT+    +++L ++ M  P  +     +     +      
Sbjct  168  MDKIP-----AEQRQTMLFSATMPKA-IQELVQQFMKAPKIIKTMNNEMSDPQIDEYYTI  221

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
            V                                          + K +     +  H+ +
Sbjct  222  VKE----------------------------------------LEKFDTFTNFLDVHQPE  241

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
             AI+F RTK   D L    + +G         +    LHGD    +R + L++FK   + 
Sbjct  242  LAIVFGRTKRRVDELTSALLSKG---------YKAEGLHGDITQAKRLEVLKKFKNDQID  292

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             L+ TDVAARG+DI GV +V N  +P + ++Y HRIGR GRA + G+A++ V   +    
Sbjct  293  ILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYI  352

Query  628  YHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHL----NCTISQVEPDIKVPVDE  683
              +     +     R        +   E  +   ++  +       + ++  ++    D 
Sbjct  353  RQIEDVNNRRMKALR-PPHRKEVLKAREDDIKDRVQNWMSRENEPRLQRISSELLKEYDS  411


 Score = 101 bits (252),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 10/105 (10%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M  F E+G+  +  Q +E M +  PT IQ +SIP  L G D+L  A+TG+GKTGAF IP+
Sbjct  1    MQNFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPL  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG  105
            I+ V         G++G  ++    +   +  M   ++   F+ G
Sbjct  61   IEKVV--------GQQGVQSL--ILAPTRELAMQVAEQLREFSKG  95


>sp|Q8CRP6|CSHA_STAES DEAD-box ATP-dependent RNA helicase CshA 
OS=Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 
1200) OX=176280 GN=cshA PE=3 SV=1
Length=509

 Score = 302 bits (773),  Expect = 5e-93, Method: Composition-based stats.
 Identities = 100/480 (21%), Positives = 193/480 (40%), Gaps = 75/480 (16%)

Query  208  NGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIV  267
            N K+LG++ +    ++         ++   + +            D  +  ++   G   
Sbjct  3    NFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYAL--------EGDDILGQAQTGTGKTG  54

Query  268  KSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
                     + +        ++LI+ P+RELA Q    +++F K     K++ + + GG+
Sbjct  55   AF----GIPLIEKVVGQQGVQSLILAPTRELAMQVAEQLREFSK---GQKVQVVTVFGGM  107

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM  387
                Q+ VL+ G  IVVGTPGR+ D ++   L    +  L+LDEAD +++ G+ D +  +
Sbjct  108  PIERQIKVLKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFI  167

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
             ++IP      ++ Q ++ SAT+    +++L ++ M  P  +     +     +      
Sbjct  168  MDKIP-----AEQRQTMLFSATMPKA-IQELVQQFMKAPKIIKTMNNEMSDPQIDEYYTI  221

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
            V                                          + K +     +  H+ +
Sbjct  222  VKE----------------------------------------LEKFDTFTNFLDVHQPE  241

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
             AI+F RTK   D L    + +G         +    LHGD    +R + L++FK   + 
Sbjct  242  LAIVFGRTKRRVDELTSALLSKG---------YKAEGLHGDITQAKRLEVLKKFKNDQID  292

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             L+ TDVAARG+DI GV +V N  +P + ++Y HRIGR GRA + G+A++ V   +    
Sbjct  293  ILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYI  352

Query  628  YHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHL----NCTISQVEPDIKVPVDE  683
              +     +     R        +   E  +   ++  +       + ++  ++    D 
Sbjct  353  RQIEDVNNRRMKALR-PPHRKEVLKAREDDIKDRVQNWMSRENEPRLQRISSELLKEYDS  411


 Score = 101 bits (252),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 10/105 (10%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M  F E+G+  +  Q +E M +  PT IQ +SIP  L G D+L  A+TG+GKTGAF IP+
Sbjct  1    MQNFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPL  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG  105
            I+ V         G++G  ++    +   +  M   ++   F+ G
Sbjct  61   IEKVV--------GQQGVQSL--ILAPTRELAMQVAEQLREFSKG  95


>sp|A9MJ29|RHLB_SALAR ATP-dependent RNA helicase RhlB OS=Salmonella 
arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) OX=41514 
GN=rhlB PE=3 SV=1
Length=421

 Score = 299 bits (766),  Expect = 5e-93, Method: Composition-based stats.
 Identities = 114/453 (25%), Positives = 187/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +  +    ++   L                    ++   G  +   
Sbjct  13   DFALHPQVVEALEKKGFYNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQTKFLP----NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +     +     N P+ALI+ P+RELA Q   + +   +      L+  L  GG
Sbjct  65   TSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQ---VTGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +V+++ E      +   + 
Sbjct  182  LFRRMPPAA----QRLNMLFSATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+++  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEDIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + S  G     ++   +   T     ++L
Sbjct  367  NLPAIESYIGHSIPVSKYNPEALMTDLPKPLRL  399


 Score = 98.7 bits (244),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 55/354 (16%), Positives = 119/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + +  G +
Sbjct  71   LLSHPAIDD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAQVTGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPAAQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  +    ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|Q8JFP1|IF4A2_CHICK Eukaryotic initiation factor 4A-II OS=Gallus 
gallus OX=9031 GN=EIF4A2 PE=2 SV=1
Length=407

 Score = 298 bits (764),  Expect = 5e-93, Method: Composition-based stats.
 Identities = 116/428 (27%), Positives = 188/428 (44%), Gaps = 74/428 (17%)

Query  228  FPACVLKNAELK--FNFGEEEFK-------FPPKDGFVALSKAPDGYIVKSQHSGNAQVT  278
            F    LK + L+  + +G E+          P   G+  +++A  G   K+     + + 
Sbjct  35   FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSG-TGKTATFAISILQ  93

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-  337
            Q +      +AL++ P+RELA+Q    I     Y+          IGG   R+++  L+ 
Sbjct  94   QLEIDLKETQALVLAPTRELAQQIQKVILALGDYMGAT---CHACIGGTNVRNEMQKLQA  150

Query  338  NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD  397
                IVVGTPGR+ D+++   L+   ++  VLDEAD +LS+G+ D I  +  ++      
Sbjct  151  EAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKL------  204

Query  398  GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWE  457
               +QV++ SAT+   DV ++++K M  P  + +K E+   + +    + V  +  +L  
Sbjct  205  STNIQVVLLSATMP-MDVLEVTKKFMREPIRILVKKEELTLEGIKQFYINVEREEWKL--  261

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
                                              L   Y    I      QA+IF  T+ 
Sbjct  262  --------------------------------DTLCDLYETLTIT-----QAVIFLNTRR  284

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
              D L +               F+   LHGD    ER   +  F+ G  R LI TD+ AR
Sbjct  285  KVDWLTEKM---------HARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLAR  335

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
            GID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V  E +++   +     + 
Sbjct  336  GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDI-----ET  390

Query  638  CYNTRLKE  645
             YNT ++E
Sbjct  391  FYNTTVEE  398


 Score = 94.0 bits (232),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 22/107 (21%), Positives = 42/107 (39%), Gaps = 9/107 (8%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +M +   + + +    +  P+ IQ  +I   + G DV+  A++G+GKT  F+I ++Q 
Sbjct  35   FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ  94

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLC  110
            +   LK+ Q             +   +          A        C
Sbjct  95   LEIDLKETQ---------ALVLAPTRELAQQIQKVILALGDYMGATC  132


>sp|Q8EJQ5|RHLB_SHEON ATP-dependent RNA helicase RhlB OS=Shewanella 
oneidensis (strain MR-1) OX=211586 GN=rhlB PE=3 SV=1
Length=439

 Score = 300 bits (767),  Expect = 5e-93, Method: Composition-based stats.
 Identities = 108/455 (24%), Positives = 186/455 (41%), Gaps = 71/455 (16%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
              DL L  E+   +          ++   L                    ++   G  + 
Sbjct  11   FADLPLHPEVKQALAENGFEFCTPIQALSLPVLL--------QSKDIAGQAQTGTGKTMA  62

Query  269  SQHSG-NAQVTQTKF---LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
               +  N  ++ +       N P+A+I+ P+RELA Q   +     K+    +L+  ++ 
Sbjct  63   FLVATFNHLLSSSIPEGRQLNQPRAIIMAPTRELAIQIAKDAILLAKH---TRLKVGIVY  119

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG +   Q  VL+ GVDI++GT GR+ D V  G +NL+ ++ +VLDEAD +   G+   I
Sbjct  120  GGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDI  179

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-H  443
              +  ++P    +  +   ++ SATL S  V++L+   M+ P  V++  E+     +   
Sbjct  180  RFLFRRMP----NADQRLNMLFSATL-SMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEE  234

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
            +  P      RL                                          +  I+E
Sbjct  235  IFYPSQEDKMRL-----------------------------------------LLTLIEE  253

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
               ++AI+F  TK  C+NL  +          +G       L GD    +R + LE+F +
Sbjct  254  DWPEKAIVFSNTKHSCENLWSWL---------EGDGHRVGLLTGDVPQKKRIRILEQFTQ  304

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
            G +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G+++S    E 
Sbjct  305  GQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEEY  364

Query  624  EKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                  + +        +    D       + +++
Sbjct  365  ALNLPAIETYINHSIPVSNYDRDALLDDIPSPVKI  399


 Score = 105 bits (261),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 62/353 (18%), Positives = 120/353 (34%), Gaps = 60/353 (17%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+++ + PE+ QA+ E  +   T IQA S+P++L   D+   A+TG+GKT AF +     
Sbjct  11   FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNH  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +  +     EG++         +   +  +         A  +                R
Sbjct  71   LLSS--SIPEGRQLNQPRAIIMAPTRELAIQIAKDAILLAKHT----------------R  112

Query  124  ATKGLMKGKHYYEV--SCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDN  181
               G++ G   Y+V     DQG+           + +GT      +   G  + N     
Sbjct  113  LKVGIVYGGESYDVQRKVLDQGV----------DILIGTTGRIIDYVRQGIINLN-----  157

Query  182  YGEEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFEIPPHM---KNQALFPACVLKNAE  237
                          + +D+    F     KD+   F   P+     N        +K  E
Sbjct  158  ---AIQA-------VVLDEADRMFDLGFIKDIRFLFRRMPNADQRLNMLFSATLSMKVQE  207

Query  238  LKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRE  297
            L ++   +  K              +     SQ      +          KA++   ++ 
Sbjct  208  LAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQEDKMRLLLTLIEEDWPEKAIVFSNTK-  266

Query  298  LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                  ++ +    +++    R  L+ G V  + ++ +LE      +DI+V T
Sbjct  267  ------HSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDILVAT  313


>sp|Q0UK12|RRP3_PHANO ATP-dependent rRNA helicase RRP3 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=RRP3 PE=3 SV=2
Length=546

 Score = 303 bits (776),  Expect = 6e-93, Method: Composition-based stats.
 Identities = 101/442 (23%), Positives = 166/442 (38%), Gaps = 71/442 (16%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K   DLG+  E+    +N     A  ++   +                 + L++   G  
Sbjct  115  KTFADLGVREELCDACENLGYKTATPIQTESIPLALA--------GKDIIGLAETGSGKT  166

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
                      +      P A   LI+ P+RELA Q    +      I+   ++   ++GG
Sbjct  167  AAFVLPI---LQALLDKPQAYFGLIMAPTRELAYQISQQVDALGSIIN---VKCATLVGG  220

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            +    Q   L     I+V +PGRL D + +T   +L  +++LVLDEAD LL   + D ++
Sbjct  221  MDMVPQAIALSKRPHIIVASPGRLLDHLENTKGFSLKHLKYLVLDEADRLLDLDFGDSLD  280

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED-SVPDTVHHV  444
            ++   +P+           + SAT+ S  V+ L    +  P  V +      V  T+   
Sbjct  281  KIFKVLPR-----DDRHTYLFSATM-SSKVESLQRAALKNPVRVSISSSSHQVVSTLLQS  334

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
             + +  K                                         K  Y +  + ++
Sbjct  335  YMLIPHK----------------------------------------YKDLYLIHLLNDN  354

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
                 I+F RT  +   L       G         F  + LHG      R   L +FK  
Sbjct  355  IGHATILFTRTVNETQRLAVLLRTLG---------FQALPLHGQLSQSNRLGALNKFKAK  405

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
                L+ TDVAARG+DI  V  V+N  LP + + YVHR+GR  RA + G A+S V     
Sbjct  406  ARDILVATDVAARGLDIPSVDLVVNFDLPHDSETYVHRVGRTARAGKSGKAVSFVTQYDL  465

Query  625  KVWYHVCSSRGKGCYNTRLKED  646
            +++  +  + GK     ++  D
Sbjct  466  EIFQRIEHALGKQVPEEKVSRD  487


 Score = 104 bits (260),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 9/110 (8%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F+++GV  E+  A E + +   T IQ ESIPL L G D++  AETGSGKT AF +P++
Sbjct  115  KTFADLGVREELCDACENLGYKTATPIQTESIPLALAGKDIIGLAETGSGKTAAFVLPIL  174

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
            Q + +         K +       +   +       +  A     +  C 
Sbjct  175  QALLD---------KPQAYFGLIMAPTRELAYQISQQVDALGSIINVKCA  215


>sp|A1D373|PRP5_NEOFI Pre-mRNA-processing ATP-dependent RNA helicase 
prp5 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 
3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) 
OX=331117 GN=prp5 PE=3 SV=1
Length=1193

 Score = 317 bits (813),  Expect = 6e-93, Method: Composition-based stats.
 Identities = 112/510 (22%), Positives = 206/510 (40%), Gaps = 102/510 (20%)

Query  195  YLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDG  254
             +D+ K  +K+S      GL  +    +          +++  +                
Sbjct  549  GVDVPKPVMKWS----QCGLGVQTLDVIHRLGYENPTSIQSQAIPAIMS--------GRD  596

Query  255  FVALSKAPDGYIVKSQHSGNAQVTQTKFLPN--APKALIVEPSRELAEQTLNNIKQFKKY  312
             + ++K   G  +         +   + L N   P  LI+ P+RELA Q   + K F K 
Sbjct  597  VIGVAKTGSGKTIAFLIPMFRHIRDQRPLENMEGPIGLIMTPTRELATQIHKDCKPFLKA  656

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVL  369
            ++   LR +   GG   +DQ++ L+ G +IVV TPGR+ DL++       NL +V ++VL
Sbjct  657  LN---LRAVCAYGGAPIKDQIAELKRGAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVL  713

Query  370  DEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWV  429
            DEAD +   G+   + ++   I          Q ++ SAT    +++ L+ K +  P  +
Sbjct  714  DEADRMFDMGFEPQVMKIMANI------RPDRQTVLFSATFP-RNMEALARKSLTKPIEI  766

Query  430  DLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAI  489
             + G+  V   +  +V   N  T                                  + +
Sbjct  767  VVGGKSVVAPEITQIVEVRNEDT----------------------------------KFV  792

Query  490  KILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDR  549
            ++L+    + +   ++  +A+IF   +   D L +  +++G         + C+ +HG +
Sbjct  793  RLLEILGNLYSDDANEDARALIFVDRQEAADTLLRELMRKG---------YPCMSIHGGK  843

Query  550  KPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA  609
               +R   +E FK G    LI T VAARG+D+  +  V+N   P+  ++YVHR GR GRA
Sbjct  844  DQIDRDSTIEDFKAGIFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRA  903

Query  610  ERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCT  669
               G A++ +  E+E+    +  +                                L  +
Sbjct  904  GNTGTAVTFLTEEQERYSVDIAKA--------------------------------LRQS  931

Query  670  ISQVEPDIKVPVDEFDGKVTYGQKRAAGGG  699
              +V   ++  VD F  KV  G+++A+  G
Sbjct  932  GQKVPEPVQKMVDSFLEKVKAGKEKASASG  961


 Score = 106 bits (264),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 26/97 (27%), Positives = 50/97 (52%), Gaps = 4/97 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  +S+ G+  +    +  + +  PT IQ+++IP I+ G DV+  A+TGSGKT AF IP+
Sbjct  556  VMKWSQCGLGVQTLDVIHRLGYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLIPM  615

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYD  97
             + +    +DQ+  +  +  I    +   +     + 
Sbjct  616  FRHI----RDQRPLENMEGPIGLIMTPTRELATQIHK  648


>sp|Q1DHB2|PRP5_COCIM Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Coccidioides immitis (strain RS) OX=246410 GN=PRP5 
PE=3 SV=1
Length=1197

 Score = 317 bits (813),  Expect = 6e-93, Method: Composition-based stats.
 Identities = 112/494 (23%), Positives = 197/494 (40%), Gaps = 102/494 (21%)

Query  213  GLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHS  272
            GL  +    ++         +++  +                 + ++K   G  +     
Sbjct  565  GLGVQTLDVIRKLGYEQPTSIQSQAIPAIMS--------GRDVIGVAKTGSGKTIAFLLP  616

Query  273  GNAQVTQTKFLPN--APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
                +   + L N   P  LI+ P+RELA Q     K F K ++   LR +   GG   +
Sbjct  617  MFRHIKDQRPLENMEGPVGLIMTPTRELATQIHKECKPFLKALN---LRAVCAYGGAPIK  673

Query  331  DQLSVLENGVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRM  387
            DQ++ L+ G +I+V TPGR+ DL++       NL +V ++VLDEAD +   G+   + ++
Sbjct  674  DQIAELKRGAEIIVCTPGRMIDLLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKI  733

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVV-  446
             + I          Q ++ SAT    +++ L+ K +  P  + + G   V   +  +V  
Sbjct  734  ISNI------RPSRQTVLFSATFP-RNMEALARKTLTKPVEIIVGGRSVVAQEITQIVEV  786

Query  447  -PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N K  RL E LG  +                                    +   ++
Sbjct  787  RPENTKFVRLLELLGNLY------------------------------------SDDNNE  810

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
              +A+IF   +   D L +  +++G         + C+ +HG +   +R   ++ FK G 
Sbjct  811  DARALIFVDRQEAADGLLRDLMRKG---------YPCMSIHGGKDQVDRDSTIDDFKAGI  861

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
               LI T VAARG+D+  +  VIN   P+  ++YVHR GR GRA   G A++ +  E+E+
Sbjct  862  FPVLIATSVAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEEQER  921

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFD  685
                +  +                                L  +   V   ++  VD F 
Sbjct  922  YSVDIAKA--------------------------------LKQSGQSVPEAVQKMVDSFL  949

Query  686  GKVTYGQKRAAGGG  699
             KV  G+++A+  G
Sbjct  950  EKVKSGKEKASASG  963


 Score = 107 bits (268),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 62/147 (42%), Gaps = 13/147 (9%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  +S+ G+  +    + ++ +  PT IQ+++IP I+ G DV+  A+TGSGKT AF +P+
Sbjct  558  VQKWSQCGLGVQTLDVIRKLGYEQPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPM  617

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF--AIGSDGLCCQSREVKE  118
             + +    KDQ+  +  +  +    +   +     +     F  A+    +C       +
Sbjct  618  FRHI----KDQRPLENMEGPVGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIK  673

Query  119  WHGCRATKGLMKGKHYYEVSCHDQGLC  145
                   +G        E+     G  
Sbjct  674  DQIAELKRGA-------EIIVCTPGRM  693


>sp|P0A2P0|RHLB_SALTY ATP-dependent RNA helicase RhlB OS=Salmonella 
typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 
GN=rhlB PE=3 SV=2
Length=421

 Score = 299 bits (765),  Expect = 6e-93, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 186/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +  +    ++   L                    ++   G  +   
Sbjct  13   DFALHPQVVEALEKKGFYNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQTKFLP----NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +     +     N P+ALI+ P+RELA Q   + +   +      L+  L  GG
Sbjct  65   TSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQ---ATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +V+++ E      +   + 
Sbjct  182  LFRRMPPAA----QRLNMLFSATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+++  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEDIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + S  G     ++   +         ++L
Sbjct  367  NLPAIESYIGHSIPVSKYNPEALMNDLPKPLRL  399


 Score = 99.0 bits (245),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 55/354 (16%), Positives = 119/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + +  G +
Sbjct  71   LLSHPAIDD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAQATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPAAQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  +    ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|P0A2P1|RHLB_SALTI ATP-dependent RNA helicase RhlB OS=Salmonella 
typhi OX=90370 GN=rhlB PE=3 SV=2
Length=421

 Score = 299 bits (765),  Expect = 6e-93, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 186/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +  +    ++   L                    ++   G  +   
Sbjct  13   DFALHPQVVEALEKKGFYNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQTKFLP----NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +     +     N P+ALI+ P+RELA Q   + +   +      L+  L  GG
Sbjct  65   TSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQ---ATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +V+++ E      +   + 
Sbjct  182  LFRRMPPAA----QRLNMLFSATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+++  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEDIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + S  G     ++   +         ++L
Sbjct  367  NLPAIESYIGHSIPVSKYNPEALMNDLPKPLRL  399


 Score = 99.0 bits (245),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 55/354 (16%), Positives = 119/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + +  G +
Sbjct  71   LLSHPAIDD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAQATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPAAQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  +    ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|B4TNT3|RHLB_SALSV ATP-dependent RNA helicase RhlB OS=Salmonella 
schwarzengrund (strain CVM19633) OX=439843 GN=rhlB PE=3 
SV=1
Length=421

 Score = 299 bits (765),  Expect = 6e-93, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 186/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +  +    ++   L                    ++   G  +   
Sbjct  13   DFALHPQVVEALEKKGFYNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQTKFLP----NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +     +     N P+ALI+ P+RELA Q   + +   +      L+  L  GG
Sbjct  65   TSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQ---ATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +V+++ E      +   + 
Sbjct  182  LFRRMPPAA----QRLNMLFSATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+++  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEDIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + S  G     ++   +         ++L
Sbjct  367  NLPAIESYIGHSIPVSKYNPEALMNDLPKPLRL  399


 Score = 99.0 bits (245),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 55/354 (16%), Positives = 119/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + +  G +
Sbjct  71   LLSHPAIDD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAQATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPAAQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  +    ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|C0Q2V9|RHLB_SALPC ATP-dependent RNA helicase RhlB OS=Salmonella 
paratyphi C (strain RKS4594) OX=476213 GN=rhlB PE=3 SV=1
Length=421

 Score = 299 bits (765),  Expect = 6e-93, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 186/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +  +    ++   L                    ++   G  +   
Sbjct  13   DFALHPQVVEALEKKGFYNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQTKFLP----NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +     +     N P+ALI+ P+RELA Q   + +   +      L+  L  GG
Sbjct  65   TSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQ---ATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +V+++ E      +   + 
Sbjct  182  LFRRMPPAA----QRLNMLFSATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+++  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEDIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + S  G     ++   +         ++L
Sbjct  367  NLPAIESYIGHSIPVSKYNPEALMNDLPKPLRL  399


 Score = 99.0 bits (245),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 55/354 (16%), Positives = 119/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + +  G +
Sbjct  71   LLSHPAIDD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAQATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPAAQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  +    ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|A9MXF3|RHLB_SALPB ATP-dependent RNA helicase RhlB OS=Salmonella 
paratyphi B (strain ATCC BAA-1250 / SPB7) OX=1016998 GN=rhlB 
PE=3 SV=1
Length=421

 Score = 299 bits (765),  Expect = 6e-93, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 186/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +  +    ++   L                    ++   G  +   
Sbjct  13   DFALHPQVVEALEKKGFYNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQTKFLP----NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +     +     N P+ALI+ P+RELA Q   + +   +      L+  L  GG
Sbjct  65   TSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQ---ATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +V+++ E      +   + 
Sbjct  182  LFRRMPPAA----QRLNMLFSATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+++  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEDIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + S  G     ++   +         ++L
Sbjct  367  NLPAIESYIGHSIPVSKYNPEALMNDLPKPLRL  399


 Score = 99.0 bits (245),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 55/354 (16%), Positives = 119/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + +  G +
Sbjct  71   LLSHPAIDD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAQATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPAAQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  +    ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|B4SZ26|RHLB_SALNS ATP-dependent RNA helicase RhlB OS=Salmonella 
newport (strain SL254) OX=423368 GN=rhlB PE=3 SV=1
Length=421

 Score = 299 bits (765),  Expect = 6e-93, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 186/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +  +    ++   L                    ++   G  +   
Sbjct  13   DFALHPQVVEALEKKGFYNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQTKFLP----NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +     +     N P+ALI+ P+RELA Q   + +   +      L+  L  GG
Sbjct  65   TSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQ---ATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +V+++ E      +   + 
Sbjct  182  LFRRMPPAA----QRLNMLFSATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+++  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEDIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + S  G     ++   +         ++L
Sbjct  367  NLPAIESYIGHSIPVSKYNPEALMNDLPKPLRL  399


 Score = 99.0 bits (245),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 55/354 (16%), Positives = 119/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + +  G +
Sbjct  71   LLSHPAIDD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAQATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPAAQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  +    ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|B4TB13|RHLB_SALHS ATP-dependent RNA helicase RhlB OS=Salmonella 
heidelberg (strain SL476) OX=454169 GN=rhlB PE=3 SV=1
Length=421

 Score = 299 bits (765),  Expect = 6e-93, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 186/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +  +    ++   L                    ++   G  +   
Sbjct  13   DFALHPQVVEALEKKGFYNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQTKFLP----NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +     +     N P+ALI+ P+RELA Q   + +   +      L+  L  GG
Sbjct  65   TSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQ---ATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +V+++ E      +   + 
Sbjct  182  LFRRMPPAA----QRLNMLFSATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+++  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEDIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + S  G     ++   +         ++L
Sbjct  367  NLPAIESYIGHSIPVSKYNPEALMNDLPKPLRL  399


 Score = 99.0 bits (245),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 55/354 (16%), Positives = 119/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + +  G +
Sbjct  71   LLSHPAIDD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAQATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPAAQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  +    ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|B5RFS3|RHLB_SALG2 ATP-dependent RNA helicase RhlB OS=Salmonella 
gallinarum (strain 287/91 / NCTC 13346) OX=550538 GN=rhlB 
PE=3 SV=1
Length=421

 Score = 299 bits (765),  Expect = 6e-93, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 186/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +  +    ++   L                    ++   G  +   
Sbjct  13   DFALHPQVVEALEKKGFYNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQTKFLP----NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +     +     N P+ALI+ P+RELA Q   + +   +      L+  L  GG
Sbjct  65   TSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQ---ATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +V+++ E      +   + 
Sbjct  182  LFRRMPPAA----QRLNMLFSATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+++  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEDIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + S  G     ++   +         ++L
Sbjct  367  NLPAIESYIGHSIPVSKYNPEALMNDLPKPLRL  399


 Score = 99.0 bits (245),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 55/354 (16%), Positives = 119/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + +  G +
Sbjct  71   LLSHPAIDD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAQATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPAAQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  +    ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|B5QVH2|RHLB_SALEP ATP-dependent RNA helicase RhlB OS=Salmonella 
enteritidis PT4 (strain P125109) OX=550537 GN=rhlB PE=3 
SV=1
Length=421

 Score = 299 bits (765),  Expect = 6e-93, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 186/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +  +    ++   L                    ++   G  +   
Sbjct  13   DFALHPQVVEALEKKGFYNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQTKFLP----NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +     +     N P+ALI+ P+RELA Q   + +   +      L+  L  GG
Sbjct  65   TSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQ---ATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +V+++ E      +   + 
Sbjct  182  LFRRMPPAA----QRLNMLFSATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+++  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEDIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + S  G     ++   +         ++L
Sbjct  367  NLPAIESYIGHSIPVSKYNPEALMNDLPKPLRL  399


 Score = 99.0 bits (245),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 55/354 (16%), Positives = 119/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + +  G +
Sbjct  71   LLSHPAIDD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAQATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPAAQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  +    ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|Q57HT6|RHLB_SALCH ATP-dependent RNA helicase RhlB OS=Salmonella 
choleraesuis (strain SC-B67) OX=321314 GN=rhlB PE=3 SV=1
Length=421

 Score = 299 bits (765),  Expect = 6e-93, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 186/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +  +    ++   L                    ++   G  +   
Sbjct  13   DFALHPQVVEALEKKGFYNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQTKFLP----NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +     +     N P+ALI+ P+RELA Q   + +   +      L+  L  GG
Sbjct  65   TSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQ---ATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +V+++ E      +   + 
Sbjct  182  LFRRMPPAA----QRLNMLFSATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+++  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEDIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + S  G     ++   +         ++L
Sbjct  367  NLPAIESYIGHSIPVSKYNPEALMNDLPKPLRL  399


 Score = 99.0 bits (245),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 55/354 (16%), Positives = 119/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + +  G +
Sbjct  71   LLSHPAIDD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAQATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPAAQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  +    ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|B5EZ40|RHLB_SALA4 ATP-dependent RNA helicase RhlB OS=Salmonella 
agona (strain SL483) OX=454166 GN=rhlB PE=3 SV=1
Length=421

 Score = 299 bits (765),  Expect = 6e-93, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 186/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +  +    ++   L                    ++   G  +   
Sbjct  13   DFALHPQVVEALEKKGFYNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQTKFLP----NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +     +     N P+ALI+ P+RELA Q   + +   +      L+  L  GG
Sbjct  65   TSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQ---ATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +V+++ E      +   + 
Sbjct  182  LFRRMPPAA----QRLNMLFSATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+++  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEDIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + S  G     ++   +         ++L
Sbjct  367  NLPAIESYIGHSIPVSKYNPEALMNDLPKPLRL  399


 Score = 99.0 bits (245),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 55/354 (16%), Positives = 119/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + +  G +
Sbjct  71   LLSHPAIDD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAQATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPAAQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  +    ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|A1CQA9|PRP5_ASPCL Pre-mRNA-processing ATP-dependent RNA helicase 
prp5 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 
513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 
GN=prp5 PE=3 SV=1
Length=1192

 Score = 317 bits (813),  Expect = 6e-93, Method: Composition-based stats.
 Identities = 109/492 (22%), Positives = 198/492 (40%), Gaps = 98/492 (20%)

Query  213  GLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHS  272
            GL  +    ++         +++  +                 + ++K   G  V     
Sbjct  563  GLGVQALDVIERLGYESPTSIQSQAIPAIMS--------GRDVIGVAKTGSGKTVAFLIP  614

Query  273  GNAQVTQTKFLPN--APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
                +   + L N   P  LI+ P+RELA Q   + K F K ++   LR +   GG   +
Sbjct  615  MFRHIKDQRPLDNMEGPIGLIMTPTRELATQIHKDCKPFLKALN---LRAVCAYGGAPIK  671

Query  331  DQLSVLENGVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRM  387
            DQ++ L+ G +IVV TPGR+ DL++       NL +V ++VLDEAD +   G+   + ++
Sbjct  672  DQIADLKRGAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKI  731

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
               I          Q ++ SAT    +++ L+ K +  P  + + G   V   +  +V  
Sbjct  732  MANI------RPDRQTVLFSATFP-RNMEALARKALTKPIEIIVGGRSVVAPEITQIVEV  784

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
             N  T                                  + +++L+    + +   ++  
Sbjct  785  RNEDT----------------------------------KFVRLLEILGNLYSDDANEDA  810

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
            +++IF   +   D L +  +++G         + C+ +HG +   +R   +E FK G   
Sbjct  811  RSLIFVERQEAADALLRELMRKG---------YPCMSIHGGKDQIDRDSTIEDFKAGIFP  861

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             LI T VAARG+D+  +  V+N   P+  ++YVHR GR GRA   G A++ +  E+E+  
Sbjct  862  VLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEEQERYS  921

Query  628  YHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGK  687
              +  +                                L  +  QV   ++  VD F  K
Sbjct  922  VDIAKA--------------------------------LKQSGQQVPEPVQKMVDSFLEK  949

Query  688  VTYGQKRAAGGG  699
            V  G+++A+  G
Sbjct  950  VKAGKEKASASG  961


 Score = 105 bits (262),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 28/97 (29%), Positives = 50/97 (52%), Gaps = 4/97 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  +S+ G+  +    +E + +  PT IQ+++IP I+ G DV+  A+TGSGKT AF IP+
Sbjct  556  VQKWSQCGLGVQALDVIERLGYESPTSIQSQAIPAIMSGRDVIGVAKTGSGKTVAFLIPM  615

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYD  97
             + +    KDQ+     +  I    +   +     + 
Sbjct  616  FRHI----KDQRPLDNMEGPIGLIMTPTRELATQIHK  648


>sp|P93008|RH21_ARATH DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis 
thaliana OX=3702 GN=RH21 PE=2 SV=1
Length=733

 Score = 308 bits (789),  Expect = 7e-93, Method: Composition-based stats.
 Identities = 94/444 (21%), Positives = 171/444 (39%), Gaps = 77/444 (17%)

Query  210  KDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKS  269
            ++  L  E+   ++         ++ A +             +   + +++   G     
Sbjct  316  EESKLTSELLKAVERAGYKKPSPIQMAAIPLGL--------QQRDVIGIAETGSGKTAAF  367

Query  270  QHSGNAQVTQTKFLPN-----APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
                 A +++   +        P A+++ P+RELA+Q      +F  Y+     R   I+
Sbjct  368  VLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLG---FRVTSIV  424

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG +  +Q   +  G +IV+ TPGRL D +      L+Q  ++VLDEAD ++  G+   +
Sbjct  425  GGQSIEEQGLKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQV  484

Query  385  NRMHNQIPQVTSDGKR-----------LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG  433
              + + +P      +                + SAT+    V++L+ K +  P  V +  
Sbjct  485  AGVLDAMPSSNLKPENEEEELDEKKIYRTTYMFSATMPPG-VERLARKYLRNPVVVTIGT  543

Query  434  EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK  493
                 D +   V+ +                                            K
Sbjct  544  AGKTTDLISQHVIMMKESE----------------------------------------K  563

Query  494  GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
                 + + E     AI+F  TK +CD++ +   + G         +    LHG +   +
Sbjct  564  FFRLQKLLDELGEKTAIVFVNTKKNCDSIAKNLDKAG---------YRVTTLHGGKSQEQ  614

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
            R+ +LE F+      L+ TDV  RGIDI  V +VIN  +P   + Y HRIGR GRA + G
Sbjct  615  REISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSG  674

Query  614  LAISLVATEKEKVWYHVCSSRGKG  637
            +A S +     +V+Y +     + 
Sbjct  675  VATSFLTLHDTEVFYDLKQMLVQS  698


 Score = 109 bits (273),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 48/103 (47%), Gaps = 1/103 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M ++ E  +  E+ +AVE   +  P+ IQ  +IPL L   DV+  AETGSGKT AF +P+
Sbjct  312  MRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM  371

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
            +  +   L    E  + +       +   +      +    FA
Sbjct  372  LAYISR-LPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFA  413


>sp|Q0SYX0|RHLB_SHIF8 ATP-dependent RNA helicase RhlB OS=Shigella 
flexneri serotype 5b (strain 8401) OX=373384 GN=rhlB PE=3 
SV=1
Length=421

 Score = 298 bits (764),  Expect = 7e-93, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 184/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +       ++   L                    ++   G  +   
Sbjct  13   DFALHPKVVEALEKKGFHNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQ----TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +           N P+ALI+ P+RELA Q   + +      +   L+  L  GG
Sbjct  65   TSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLA---EATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +++++ E      +   + 
Sbjct  182  LFRRMPPAN----QRLNMLFSATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+ +  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEEIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + +  G     ++   D   T     ++L
Sbjct  367  NLPAIENYIGHSILVSKYNPDALMTDLPKPLRL  399


 Score = 99.4 bits (246),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 56/354 (16%), Positives = 120/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + E  G +
Sbjct  71   LLSHPAIAD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAEATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPANQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  ++   ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|A3D9I5|RHLB_SHEB5 ATP-dependent RNA helicase RhlB OS=Shewanella 
baltica (strain OS155 / ATCC BAA-1091) OX=325240 GN=rhlB 
PE=3 SV=1
Length=438

 Score = 299 bits (766),  Expect = 8e-93, Method: Composition-based stats.
 Identities = 118/507 (23%), Positives = 196/507 (39%), Gaps = 87/507 (17%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
            ++   DL L  E+   +          ++   L                    ++   G 
Sbjct  8    TQRFADLPLHPEVKQALAENGFEFCTPIQALSLPVLL--------QSKDIAGQAQTGTGK  59

Query  266  IVKSQHSGNAQVTQTKFLP-----NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRE  320
             +            +  +P     N P+A+I+ P+RELA Q   +     K+     L+ 
Sbjct  60   TMAFLV-ATFNHLLSTPVPEGRLINQPRAIIMAPTRELAIQIAKDAILLAKHTH---LKV  115

Query  321  LLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGY  380
             ++ GG +   Q  VL+ GVDI++GT GR+ D V  G + L+ ++ +VLDEAD +   G+
Sbjct  116  GIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFDLGF  175

Query  381  SDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDT  440
               I  +  ++P+      +   ++ SATL S  V++L+   M+ P  V++  E+     
Sbjct  176  IKDIRFLFRRMPEAN----QRLNMLFSATL-SMKVQELAYDHMNEPVKVEIAPEEKTSKN  230

Query  441  VH-HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVR  499
            +   +  P   +  RL                                          + 
Sbjct  231  IKEEIFYPSQEEKMRL-----------------------------------------LLT  249

Query  500  AIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLE  559
             I+E   ++AI+F  TK  C+ L  +          +G       L GD    +R + LE
Sbjct  250  LIEEDWPEKAIVFSNTKHSCETLWSWL---------EGDGHRVGLLTGDVPQKKRIRILE  300

Query  560  RFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +F  G +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G++IS  
Sbjct  301  QFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGMSISFA  360

Query  620  ATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKV  679
              E       + S                    Y+   LL++I       I +  P    
Sbjct  361  CEEYALNLPAIESYIN----------HSIPVSNYDSEALLADIPTP--AKIHRKHPSGTR  408

Query  680  PVDEFDGKVTYGQKRAAGGGSYKGHVD  706
             + +  G    G +R+  G     H  
Sbjct  409  NLRDRSGTSRPGAQRS--GARPPRHDR  433


 Score = 104 bits (260),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 63/353 (18%), Positives = 117/353 (33%), Gaps = 60/353 (17%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+++ + PE+ QA+ E  +   T IQA S+P++L   D+   A+TG+GKT AF +     
Sbjct  11   FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNH  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +  T     EG+          +   +  +    + +        L              
Sbjct  71   LLSTP--VPEGRLINQPRAIIMAPTRELAIQI-AKDAILLAKHTHLKV------------  115

Query  124  ATKGLMKGKHYYEV--SCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDN  181
               G++ G   Y+V     DQG+           + +GT      +   G    N     
Sbjct  116  ---GIVYGGESYDVQRKVLDQGV----------DILIGTTGRIIDYVRQGIIGLN-----  157

Query  182  YGEEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFEIPPHM---KNQALFPACVLKNAE  237
                          + +D+    F     KD+   F   P      N        +K  E
Sbjct  158  ---SIQA-------VVLDEADRMFDLGFIKDIRFLFRRMPEANQRLNMLFSATLSMKVQE  207

Query  238  LKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRE  297
            L ++   E  K              +     SQ      +          KA++   ++ 
Sbjct  208  LAYDHMNEPVKVEIAPEEKTSKNIKEEIFYPSQEEKMRLLLTLIEEDWPEKAIVFSNTK-  266

Query  298  LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                  ++ +    +++    R  L+ G V  + ++ +LE      +DI+V T
Sbjct  267  ------HSCETLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVAT  313


>sp|B8E670|RHLB_SHEB2 ATP-dependent RNA helicase RhlB OS=Shewanella 
baltica (strain OS223) OX=407976 GN=rhlB PE=3 SV=1
Length=438

 Score = 299 bits (766),  Expect = 8e-93, Method: Composition-based stats.
 Identities = 118/507 (23%), Positives = 196/507 (39%), Gaps = 87/507 (17%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
            ++   DL L  E+   +          ++   L                    ++   G 
Sbjct  8    TQRFADLPLHPEVKQALAENGFEFCTPIQALSLPVLL--------QSKDIAGQAQTGTGK  59

Query  266  IVKSQHSGNAQVTQTKFLP-----NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRE  320
             +            +  +P     N P+A+I+ P+RELA Q   +     K+     L+ 
Sbjct  60   TMAFLV-ATFNHLLSTPVPEGRLINQPRAIIMAPTRELAIQIAKDAILLAKHTH---LKV  115

Query  321  LLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGY  380
             ++ GG +   Q  VL+ GVDI++GT GR+ D V  G + L+ ++ +VLDEAD +   G+
Sbjct  116  GIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFDLGF  175

Query  381  SDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDT  440
               I  +  ++P+      +   ++ SATL S  V++L+   M+ P  V++  E+     
Sbjct  176  IKDIRFLFRRMPEAN----QRLNMLFSATL-SMKVQELAYDHMNEPVKVEIAPEEKTSKN  230

Query  441  VH-HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVR  499
            +   +  P   +  RL                                          + 
Sbjct  231  IKEEIFYPSQEEKMRL-----------------------------------------LLT  249

Query  500  AIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLE  559
             I+E   ++AI+F  TK  C+ L  +          +G       L GD    +R + LE
Sbjct  250  LIEEDWPEKAIVFSNTKHSCETLWSWL---------EGDGHRVGLLTGDVPQKKRIRILE  300

Query  560  RFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +F  G +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G++IS  
Sbjct  301  QFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGMSISFA  360

Query  620  ATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKV  679
              E       + S                    Y+   LL++I       I +  P    
Sbjct  361  CEEYALNLPAIESYIN----------HSIPVSNYDSEALLADIPTP--AKIHRKHPSGTR  408

Query  680  PVDEFDGKVTYGQKRAAGGGSYKGHVD  706
             + +  G    G +R+  G     H  
Sbjct  409  NLRDRSGTSRPGAQRS--GARPPRHDR  433


 Score = 104 bits (260),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 63/353 (18%), Positives = 117/353 (33%), Gaps = 60/353 (17%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+++ + PE+ QA+ E  +   T IQA S+P++L   D+   A+TG+GKT AF +     
Sbjct  11   FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNH  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +  T     EG+          +   +  +    + +        L              
Sbjct  71   LLSTP--VPEGRLINQPRAIIMAPTRELAIQI-AKDAILLAKHTHLKV------------  115

Query  124  ATKGLMKGKHYYEV--SCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDN  181
               G++ G   Y+V     DQG+           + +GT      +   G    N     
Sbjct  116  ---GIVYGGESYDVQRKVLDQGV----------DILIGTTGRIIDYVRQGIIGLN-----  157

Query  182  YGEEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFEIPPHM---KNQALFPACVLKNAE  237
                          + +D+    F     KD+   F   P      N        +K  E
Sbjct  158  ---SIQA-------VVLDEADRMFDLGFIKDIRFLFRRMPEANQRLNMLFSATLSMKVQE  207

Query  238  LKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRE  297
            L ++   E  K              +     SQ      +          KA++   ++ 
Sbjct  208  LAYDHMNEPVKVEIAPEEKTSKNIKEEIFYPSQEEKMRLLLTLIEEDWPEKAIVFSNTK-  266

Query  298  LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                  ++ +    +++    R  L+ G V  + ++ +LE      +DI+V T
Sbjct  267  ------HSCETLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVAT  313


>sp|Q09719|DBP10_SCHPO ATP-dependent RNA helicase dbp10 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp10 
PE=1 SV=1
Length=848

 Score = 311 bits (796),  Expect = 8e-93, Method: Composition-based stats.
 Identities = 118/511 (23%), Positives = 196/511 (38%), Gaps = 39/511 (8%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
            + N + +GL   +   +  +       ++   +                 V +++   G 
Sbjct  68   ASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLL--------EGRDVVGMARTGSGK  119

Query  266  IVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
                       +  T    N  +ALI+ P+RELA QT+  +K F K      LR + I+G
Sbjct  120  TAAFVIPMIEHLKSTLANSN-TRALILSPNRELALQTVKVVKDFSK---GTDLRSVAIVG  175

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            GV+  +Q S+L    DIVV TPGR   L    KL LS + ++V DEAD L   G++  + 
Sbjct  176  GVSLEEQFSLLSGKPDIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLT  235

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
             + + +P         Q ++ SATL    V   ++  +  P  V L  E  V   +    
Sbjct  236  EILHALPTS------RQTLLFSATLPRTLV-DFAKAGLQDPVLVRLDVESKVSADLQSAF  288

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
              V               I    +      R   N          +   E A++  +   
Sbjct  289  FSVKTAEREAALLCILQDIIKLPLKDNVRPREIGNVNNPKKRKRAL---ELALKGSESGS  345

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D  ++F  TK   + + +  +Q G         +S   ++G      R   +  F+ G 
Sbjct  346  PDSTLVFVPTKHHVEYVSELLVQAG---------YSVSKIYGSLDQEARLNEINNFRLGK  396

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
               L+ TDVA+RGIDI  +  VIN   P + + +VHR+GR  RA R G A SLV  E   
Sbjct  397  TNLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRAEDAG  456

Query  626  VWYHVCSSRGKGCYNT--RLKEDGGCTIWYNEM------QLLSEIEEHLNCTISQVEPDI  677
                +     +    +  ++K D  C      +      +L++E+ E +   +S+     
Sbjct  457  YLLDLQLFLNRPLVTSSKQVKTDSDCDFTKQIVLGSLPQELVAELLEWVQRIVSRDVELQ  516

Query  678  KVPVDEFDGKVTYGQKRAAGGGSYKGHVDIL  708
            ++      G+  Y + RA            L
Sbjct  517  QLSNVAARGEKLYFRTRATCSAESAKRAKEL  547


 Score = 112 bits (281),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 7/106 (7%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F  MG+   + +A+ +  +  PT IQ ++IPL+L G DV+  A TGSGKT AF IP+I
Sbjct  69   SNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMI  128

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            + +  TL +         T     S   +  +        F+ G+D
Sbjct  129  EHLKSTLANSN-------TRALILSPNRELALQTVKVVKDFSKGTD  167


>sp|Q5RKI1|IF4A2_RAT Eukaryotic initiation factor 4A-II OS=Rattus 
norvegicus OX=10116 GN=Eif4a2 PE=1 SV=1
Length=407

 Score = 298 bits (763),  Expect = 9e-93, Method: Composition-based stats.
 Identities = 116/428 (27%), Positives = 189/428 (44%), Gaps = 74/428 (17%)

Query  228  FPACVLKNAELK--FNFGEEEFK-------FPPKDGFVALSKAPDGYIVKSQHSGNAQVT  278
            F    LK + L+  + +G E+          P   G+  +++A  G   K+     + + 
Sbjct  35   FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSG-TGKTATFAISILQ  93

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-  337
            Q +      +AL++ P+RELA+Q    I     Y+          IGG   R+++  L+ 
Sbjct  94   QLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGAT---CHACIGGTNVRNEMQKLQA  150

Query  338  NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD  397
                IVVGTPGR+ D+++   L+   ++  VLDEAD +LS+G+ D I  +  ++      
Sbjct  151  EAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKL------  204

Query  398  GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWE  457
               +QV++ SAT+ + DV ++++K M  P  + +K E+   + +    + V  +  +L  
Sbjct  205  NTSIQVVLLSATMPT-DVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKL--  261

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
                                              L   Y    I      QA+IF  T+ 
Sbjct  262  --------------------------------DTLCDLYETLTIT-----QAVIFLNTRR  284

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
              D L +               F+   LHGD    ER   +  F+ G  R LI TD+ AR
Sbjct  285  KVDWLTEKM---------HARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLAR  335

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
            GID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V  E +++   +     + 
Sbjct  336  GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDI-----ET  390

Query  638  CYNTRLKE  645
             YNT ++E
Sbjct  391  FYNTTVEE  398


 Score = 92.5 bits (228),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 21/107 (20%), Positives = 41/107 (38%), Gaps = 9/107 (8%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +M +   + + +    +  P+ IQ  +I   + G DV+  A++G+GKT  F+I ++Q 
Sbjct  35   FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ  94

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLC  110
            +    K+ Q             +   +          A        C
Sbjct  95   LEIEFKETQ---------ALVLAPTRELAQQIQKVILALGDYMGATC  132


>sp|Q5R4X1|IF4A2_PONAB Eukaryotic initiation factor 4A-II OS=Pongo 
abelii OX=9601 GN=EIF4A2 PE=2 SV=1
Length=407

 Score = 298 bits (763),  Expect = 9e-93, Method: Composition-based stats.
 Identities = 116/428 (27%), Positives = 189/428 (44%), Gaps = 74/428 (17%)

Query  228  FPACVLKNAELK--FNFGEEEFK-------FPPKDGFVALSKAPDGYIVKSQHSGNAQVT  278
            F    LK + L+  + +G E+          P   G+  +++A  G   K+     + + 
Sbjct  35   FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSG-TGKTATFAISILQ  93

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-  337
            Q +      +AL++ P+RELA+Q    I     Y+          IGG   R+++  L+ 
Sbjct  94   QLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGAT---CHACIGGTNVRNEMQKLQA  150

Query  338  NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD  397
                IVVGTPGR+ D+++   L+   ++  VLDEAD +LS+G+ D I  +  ++      
Sbjct  151  EAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKL------  204

Query  398  GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWE  457
               +QV++ SAT+ + DV ++++K M  P  + +K E+   + +    + V  +  +L  
Sbjct  205  NTSIQVVLLSATMPT-DVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKL--  261

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
                                              L   Y    I      QA+IF  T+ 
Sbjct  262  --------------------------------DTLCDLYETLTIT-----QAVIFLNTRR  284

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
              D L +               F+   LHGD    ER   +  F+ G  R LI TD+ AR
Sbjct  285  KVDWLTEKM---------HARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLAR  335

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
            GID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V  E +++   +     + 
Sbjct  336  GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDI-----ET  390

Query  638  CYNTRLKE  645
             YNT ++E
Sbjct  391  FYNTTVEE  398


 Score = 92.5 bits (228),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 21/107 (20%), Positives = 41/107 (38%), Gaps = 9/107 (8%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +M +   + + +    +  P+ IQ  +I   + G DV+  A++G+GKT  F+I ++Q 
Sbjct  35   FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ  94

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLC  110
            +    K+ Q             +   +          A        C
Sbjct  95   LEIEFKETQ---------ALVLAPTRELAQQIQKVILALGDYMGATC  132


>sp|P10630|IF4A2_MOUSE Eukaryotic initiation factor 4A-II OS=Mus 
musculus OX=10090 GN=Eif4a2 PE=1 SV=2
Length=407

 Score = 298 bits (763),  Expect = 9e-93, Method: Composition-based stats.
 Identities = 116/428 (27%), Positives = 189/428 (44%), Gaps = 74/428 (17%)

Query  228  FPACVLKNAELK--FNFGEEEFK-------FPPKDGFVALSKAPDGYIVKSQHSGNAQVT  278
            F    LK + L+  + +G E+          P   G+  +++A  G   K+     + + 
Sbjct  35   FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSG-TGKTATFAISILQ  93

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-  337
            Q +      +AL++ P+RELA+Q    I     Y+          IGG   R+++  L+ 
Sbjct  94   QLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGAT---CHACIGGTNVRNEMQKLQA  150

Query  338  NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD  397
                IVVGTPGR+ D+++   L+   ++  VLDEAD +LS+G+ D I  +  ++      
Sbjct  151  EAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKL------  204

Query  398  GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWE  457
               +QV++ SAT+ + DV ++++K M  P  + +K E+   + +    + V  +  +L  
Sbjct  205  NTSIQVVLLSATMPT-DVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKL--  261

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
                                              L   Y    I      QA+IF  T+ 
Sbjct  262  --------------------------------DTLCDLYETLTIT-----QAVIFLNTRR  284

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
              D L +               F+   LHGD    ER   +  F+ G  R LI TD+ AR
Sbjct  285  KVDWLTEKM---------HARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLAR  335

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
            GID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V  E +++   +     + 
Sbjct  336  GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDI-----ET  390

Query  638  CYNTRLKE  645
             YNT ++E
Sbjct  391  FYNTTVEE  398


 Score = 92.5 bits (228),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 21/107 (20%), Positives = 41/107 (38%), Gaps = 9/107 (8%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +M +   + + +    +  P+ IQ  +I   + G DV+  A++G+GKT  F+I ++Q 
Sbjct  35   FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ  94

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLC  110
            +    K+ Q             +   +          A        C
Sbjct  95   LEIEFKETQ---------ALVLAPTRELAQQIQKVILALGDYMGATC  132


>sp|Q14240|IF4A2_HUMAN Eukaryotic initiation factor 4A-II OS=Homo 
sapiens OX=9606 GN=EIF4A2 PE=1 SV=2
Length=407

 Score = 298 bits (763),  Expect = 9e-93, Method: Composition-based stats.
 Identities = 116/428 (27%), Positives = 189/428 (44%), Gaps = 74/428 (17%)

Query  228  FPACVLKNAELK--FNFGEEEFK-------FPPKDGFVALSKAPDGYIVKSQHSGNAQVT  278
            F    LK + L+  + +G E+          P   G+  +++A  G   K+     + + 
Sbjct  35   FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSG-TGKTATFAISILQ  93

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-  337
            Q +      +AL++ P+RELA+Q    I     Y+          IGG   R+++  L+ 
Sbjct  94   QLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGAT---CHACIGGTNVRNEMQKLQA  150

Query  338  NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD  397
                IVVGTPGR+ D+++   L+   ++  VLDEAD +LS+G+ D I  +  ++      
Sbjct  151  EAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKL------  204

Query  398  GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWE  457
               +QV++ SAT+ + DV ++++K M  P  + +K E+   + +    + V  +  +L  
Sbjct  205  NTSIQVVLLSATMPT-DVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKL--  261

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
                                              L   Y    I      QA+IF  T+ 
Sbjct  262  --------------------------------DTLCDLYETLTIT-----QAVIFLNTRR  284

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
              D L +               F+   LHGD    ER   +  F+ G  R LI TD+ AR
Sbjct  285  KVDWLTEKM---------HARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLAR  335

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
            GID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V  E +++   +     + 
Sbjct  336  GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDI-----ET  390

Query  638  CYNTRLKE  645
             YNT ++E
Sbjct  391  FYNTTVEE  398


 Score = 92.5 bits (228),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 21/107 (20%), Positives = 41/107 (38%), Gaps = 9/107 (8%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +M +   + + +    +  P+ IQ  +I   + G DV+  A++G+GKT  F+I ++Q 
Sbjct  35   FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ  94

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLC  110
            +    K+ Q             +   +          A        C
Sbjct  95   LEIEFKETQ---------ALVLAPTRELAQQIQKVILALGDYMGATC  132


>sp|Q3SZ65|IF4A2_BOVIN Eukaryotic initiation factor 4A-II OS=Bos 
taurus OX=9913 GN=EIF4A2 PE=2 SV=1
Length=407

 Score = 298 bits (763),  Expect = 9e-93, Method: Composition-based stats.
 Identities = 116/428 (27%), Positives = 189/428 (44%), Gaps = 74/428 (17%)

Query  228  FPACVLKNAELK--FNFGEEEFK-------FPPKDGFVALSKAPDGYIVKSQHSGNAQVT  278
            F    LK + L+  + +G E+          P   G+  +++A  G   K+     + + 
Sbjct  35   FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSG-TGKTATFAISILQ  93

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-  337
            Q +      +AL++ P+RELA+Q    I     Y+          IGG   R+++  L+ 
Sbjct  94   QLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGAT---CHACIGGTNVRNEMQKLQA  150

Query  338  NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD  397
                IVVGTPGR+ D+++   L+   ++  VLDEAD +LS+G+ D I  +  ++      
Sbjct  151  EAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKL------  204

Query  398  GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWE  457
               +QV++ SAT+ + DV ++++K M  P  + +K E+   + +    + V  +  +L  
Sbjct  205  NTSIQVVLLSATMPT-DVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKL--  261

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
                                              L   Y    I      QA+IF  T+ 
Sbjct  262  --------------------------------DTLCDLYETLTIT-----QAVIFLNTRR  284

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
              D L +               F+   LHGD    ER   +  F+ G  R LI TD+ AR
Sbjct  285  KVDWLTEKM---------HARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLAR  335

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
            GID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V  E +++   +     + 
Sbjct  336  GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDI-----ET  390

Query  638  CYNTRLKE  645
             YNT ++E
Sbjct  391  FYNTTVEE  398


 Score = 92.5 bits (228),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 21/107 (20%), Positives = 41/107 (38%), Gaps = 9/107 (8%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +M +   + + +    +  P+ IQ  +I   + G DV+  A++G+GKT  F+I ++Q 
Sbjct  35   FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ  94

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLC  110
            +    K+ Q             +   +          A        C
Sbjct  95   LEIEFKETQ---------ALVLAPTRELAQQIQKVILALGDYMGATC  132


>sp|B2VG58|RHLB_ERWT9 ATP-dependent RNA helicase RhlB OS=Erwinia 
tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / 
NCPPB 4357 / Et1/99) OX=465817 GN=rhlB PE=3 SV=1
Length=430

 Score = 299 bits (765),  Expect = 9e-93, Method: Composition-based stats.
 Identities = 118/454 (26%), Positives = 185/454 (41%), Gaps = 73/454 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +       ++   L F                  ++   G  +   
Sbjct  13   DFALHPQVIEALETKGFHNCTPIQALALPFTLS--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQTKFLP-----NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
             S       +   P     N P+ALI+ P+RELA Q   + +   +      L+  L  G
Sbjct  65   TS-TFHHLLSHPAPEGRQTNQPRALILAPTRELAVQIHADAEPLAQITG---LKLGLAYG  120

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            G     QL VLENGVD+++GT GRL D      +NL  ++ +VLDEAD +   G+   I 
Sbjct  121  GDGYDKQLKVLENGVDVLIGTTGRLIDYAKQNHVNLGAIQVVVLDEADRMFDLGFIKDIR  180

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HV  444
             +  ++P       +   ++ SATL SF V++L+ + M+   +V+++ +      +   +
Sbjct  181  WLFRRMPAAN----QRLNMLFSATL-SFRVRELAFENMNNAEYVEVEPDQKTGHRIKEEL  235

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
              P N +  RL + L                                         I+E 
Sbjct  236  FYPSNEEKMRLLQTL-----------------------------------------IEEE  254

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
              D+ IIF  TK  C+++  +    G              L GD    +R + L+ F KG
Sbjct  255  WPDRTIIFANTKHRCEDVWGHLAADG---------HRVGLLTGDVAQKKRLRILDDFTKG  305

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            DV  L+ TDVAARG+ I  V +V N  LPD++++YVHRIGR GRA   G +ISL   E  
Sbjct  306  DVDILVATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGANGHSISLACEEYA  365

Query  625  KVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                 +    G     +R   D   T      +L
Sbjct  366  LNLPAIEEYIGHSITVSRYNSDALMTDLPPPKRL  399


 Score = 100 bits (250),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 58/353 (16%), Positives = 119/353 (34%), Gaps = 60/353 (17%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E   +   T IQA ++P  L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPQVIEALETKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHH  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +        EG++         +   +  +  +                +  + +  G +
Sbjct  71   LLSHPAP--EGRQTNQPRALILAPTRELAVQIH--------------ADAEPLAQITGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLENGV----------DVLIGTT---------------GRLIDYA  149

Query  184  EEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFEIPPHM---KNQALFPACVLKNAELK  239
            ++  ++      + +D+    F     KD+   F   P      N         +  EL 
Sbjct  150  KQNHVNLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPAANQRLNMLFSATLSFRVRELA  209

Query  240  F-NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSRE  297
            F N    E+     D         + +     +    ++ QT      P + +I   ++ 
Sbjct  210  FENMNNAEYVEVEPDQKTGHRIKEELFY--PSNEEKMRLLQTLIEEEWPDRTIIFANTK-  266

Query  298  LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                  +  +    ++     R  L+ G VA + +L +L++     VDI+V T
Sbjct  267  ------HRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDVDILVAT  313


>sp|P0A9P8|DEAD_SHIFL ATP-dependent RNA helicase DeaD OS=Shigella 
flexneri OX=623 GN=deaD PE=3 SV=2
Length=629

 Score = 305 bits (781),  Expect = 1e-92, Method: Composition-based stats.
 Identities = 108/429 (25%), Positives = 176/429 (41%), Gaps = 69/429 (16%)

Query  205  FSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDG  264
            F     DLGL   I   + +        ++   +                 + +++   G
Sbjct  4    FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLN--------GRDVLGMAQTGSG  55

Query  265  YIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
                        +        AP+ L++ P+RELA Q    +  F K++    +  + + 
Sbjct  56   KTAAFSL---PLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRG--VNVVALY  110

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG     QL  L  G  IVVGTPGRL D +  G L+LS++  LVLDEAD +L  G+ + +
Sbjct  111  GGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDV  170

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
              +  QIP      +  Q  + SAT+    +++++ + M  P  V ++   +    +   
Sbjct  171  ETIMAQIP------EGHQTALFSATMPEA-IRRITRRFMKEPQEVRIQSSVTTRPDISQS  223

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
               V                                          + K E  VR ++  
Sbjct  224  YWTV----------------------------------------WGMRKNEALVRFLEAE  243

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
              D AIIF RTK     + +   + G         ++   L+GD     R+Q LER K G
Sbjct  244  DFDAAIIFVRTKNATLEVAEALERNG---------YNSAALNGDMNQALREQTLERLKDG  294

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
             +  LI TDVAARG+D+  +  V+N  +P + ++YVHRIGR GRA R G A+  V   + 
Sbjct  295  RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRER  354

Query  625  KVWYHVCSS  633
            ++  ++  +
Sbjct  355  RLLRNIERT  363


 Score = 114 bits (284),  Expect = 6e-25, Method: Composition-based stats.
 Identities = 33/108 (31%), Positives = 56/108 (52%), Gaps = 9/108 (8%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F+++G+   I +A+ ++ +  P+ IQAE IP +L G DVL  A+TGSGKT AFS+P++
Sbjct  6    TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL  65

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGL  109
            Q +   LK  Q             +   +  +   +  + F+    G+
Sbjct  66   QNLDPELKAPQ---------ILVLAPTRELAVQVAEAMTDFSKHMRGV  104


>sp|P0A9P6|DEAD_ECOLI ATP-dependent RNA helicase DeaD OS=Escherichia 
coli (strain K12) OX=83333 GN=deaD PE=1 SV=2
Length=629

 Score = 305 bits (781),  Expect = 1e-92, Method: Composition-based stats.
 Identities = 108/429 (25%), Positives = 176/429 (41%), Gaps = 69/429 (16%)

Query  205  FSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDG  264
            F     DLGL   I   + +        ++   +                 + +++   G
Sbjct  4    FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLN--------GRDVLGMAQTGSG  55

Query  265  YIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
                        +        AP+ L++ P+RELA Q    +  F K++    +  + + 
Sbjct  56   KTAAFSL---PLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRG--VNVVALY  110

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG     QL  L  G  IVVGTPGRL D +  G L+LS++  LVLDEAD +L  G+ + +
Sbjct  111  GGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDV  170

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
              +  QIP      +  Q  + SAT+    +++++ + M  P  V ++   +    +   
Sbjct  171  ETIMAQIP------EGHQTALFSATMPEA-IRRITRRFMKEPQEVRIQSSVTTRPDISQS  223

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
               V                                          + K E  VR ++  
Sbjct  224  YWTV----------------------------------------WGMRKNEALVRFLEAE  243

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
              D AIIF RTK     + +   + G         ++   L+GD     R+Q LER K G
Sbjct  244  DFDAAIIFVRTKNATLEVAEALERNG---------YNSAALNGDMNQALREQTLERLKDG  294

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
             +  LI TDVAARG+D+  +  V+N  +P + ++YVHRIGR GRA R G A+  V   + 
Sbjct  295  RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRER  354

Query  625  KVWYHVCSS  633
            ++  ++  +
Sbjct  355  RLLRNIERT  363


 Score = 114 bits (284),  Expect = 6e-25, Method: Composition-based stats.
 Identities = 33/108 (31%), Positives = 56/108 (52%), Gaps = 9/108 (8%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F+++G+   I +A+ ++ +  P+ IQAE IP +L G DVL  A+TGSGKT AFS+P++
Sbjct  6    TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL  65

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGL  109
            Q +   LK  Q             +   +  +   +  + F+    G+
Sbjct  66   QNLDPELKAPQ---------ILVLAPTRELAVQVAEAMTDFSKHMRGV  104


>sp|P0A9P7|DEAD_ECOL6 ATP-dependent RNA helicase DeaD OS=Escherichia 
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 
GN=deaD PE=3 SV=2
Length=629

 Score = 305 bits (781),  Expect = 1e-92, Method: Composition-based stats.
 Identities = 108/429 (25%), Positives = 176/429 (41%), Gaps = 69/429 (16%)

Query  205  FSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDG  264
            F     DLGL   I   + +        ++   +                 + +++   G
Sbjct  4    FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLN--------GRDVLGMAQTGSG  55

Query  265  YIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
                        +        AP+ L++ P+RELA Q    +  F K++    +  + + 
Sbjct  56   KTAAFSL---PLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRG--VNVVALY  110

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG     QL  L  G  IVVGTPGRL D +  G L+LS++  LVLDEAD +L  G+ + +
Sbjct  111  GGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDV  170

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
              +  QIP      +  Q  + SAT+    +++++ + M  P  V ++   +    +   
Sbjct  171  ETIMAQIP------EGHQTALFSATMPEA-IRRITRRFMKEPQEVRIQSSVTTRPDISQS  223

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
               V                                          + K E  VR ++  
Sbjct  224  YWTV----------------------------------------WGMRKNEALVRFLEAE  243

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
              D AIIF RTK     + +   + G         ++   L+GD     R+Q LER K G
Sbjct  244  DFDAAIIFVRTKNATLEVAEALERNG---------YNSAALNGDMNQALREQTLERLKDG  294

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
             +  LI TDVAARG+D+  +  V+N  +P + ++YVHRIGR GRA R G A+  V   + 
Sbjct  295  RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRER  354

Query  625  KVWYHVCSS  633
            ++  ++  +
Sbjct  355  RLLRNIERT  363


 Score = 114 bits (284),  Expect = 6e-25, Method: Composition-based stats.
 Identities = 33/108 (31%), Positives = 56/108 (52%), Gaps = 9/108 (8%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F+++G+   I +A+ ++ +  P+ IQAE IP +L G DVL  A+TGSGKT AFS+P++
Sbjct  6    TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL  65

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGL  109
            Q +   LK  Q             +   +  +   +  + F+    G+
Sbjct  66   QNLDPELKAPQ---------ILVLAPTRELAVQVAEAMTDFSKHMRGV  104


>sp|Q8XA87|DEAD_ECO57 ATP-dependent RNA helicase DeaD OS=Escherichia 
coli O157:H7 OX=83334 GN=deaD PE=3 SV=3
Length=629

 Score = 305 bits (781),  Expect = 1e-92, Method: Composition-based stats.
 Identities = 108/429 (25%), Positives = 176/429 (41%), Gaps = 69/429 (16%)

Query  205  FSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDG  264
            F     DLGL   I   + +        ++   +                 + +++   G
Sbjct  4    FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLN--------GRDVLGMAQTGSG  55

Query  265  YIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
                        +        AP+ L++ P+RELA Q    +  F K++    +  + + 
Sbjct  56   KTAAFSL---PLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRG--VNVVALY  110

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG     QL  L  G  IVVGTPGRL D +  G L+LS++  LVLDEAD +L  G+ + +
Sbjct  111  GGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDV  170

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
              +  QIP      +  Q  + SAT+    +++++ + M  P  V ++   +    +   
Sbjct  171  ETIMAQIP------EGHQTALFSATMPEA-IRRITRRFMKEPQEVRIQSSVTTRPDISQS  223

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
               V                                          + K E  VR ++  
Sbjct  224  YWTV----------------------------------------WGMRKNEALVRFLEAE  243

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
              D AIIF RTK     + +   + G         ++   L+GD     R+Q LER K G
Sbjct  244  DFDAAIIFVRTKNATLEVAEALERNG---------YNSAALNGDMNQALREQTLERLKDG  294

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
             +  LI TDVAARG+D+  +  V+N  +P + ++YVHRIGR GRA R G A+  V   + 
Sbjct  295  RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRER  354

Query  625  KVWYHVCSS  633
            ++  ++  +
Sbjct  355  RLLRNIERT  363


 Score = 114 bits (284),  Expect = 6e-25, Method: Composition-based stats.
 Identities = 33/108 (31%), Positives = 56/108 (52%), Gaps = 9/108 (8%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F+++G+   I +A+ ++ +  P+ IQAE IP +L G DVL  A+TGSGKT AFS+P++
Sbjct  6    TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL  65

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGL  109
            Q +   LK  Q             +   +  +   +  + F+    G+
Sbjct  66   QNLDPELKAPQ---------ILVLAPTRELAVQVAEAMTDFSKHMRGV  104


>sp|Q4R4Y9|IF4A2_MACFA Eukaryotic initiation factor 4A-II OS=Macaca 
fascicularis OX=9541 GN=EIF4A2 PE=2 SV=1
Length=408

 Score = 298 bits (762),  Expect = 1e-92, Method: Composition-based stats.
 Identities = 117/428 (27%), Positives = 190/428 (44%), Gaps = 74/428 (17%)

Query  228  FPACVLKNAELK--FNFGEEEFK-------FPPKDGFVALSKAPDGYIVKSQHSGNAQVT  278
            F    LK + L+  + +G E+          P   G+  +++A  G   K+     + + 
Sbjct  36   FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSG-TGKTATFAISILQ  94

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-  337
            Q +      +AL++ P+RELA+Q    I     Y+          IGG   R+++  L+ 
Sbjct  95   QLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGAT---CHACIGGTNVRNEMQKLQA  151

Query  338  NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD  397
                IVVGTPGR+ D+++   L+   ++  VLDEADG+LS+G+ D I  +  ++      
Sbjct  152  EAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADGMLSRGFKDQIYEIFQKL------  205

Query  398  GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWE  457
               +QV++ SAT+ + DV ++++K M  P  + +K E+   + +    + V  +  +L  
Sbjct  206  NTSIQVVLLSATMPT-DVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKL--  262

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
                                              L   Y    I      QA+IF  T+ 
Sbjct  263  --------------------------------DTLCDLYETLTIT-----QAVIFLNTRR  285

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
              D L +               F+   LHGD    ER   +  F+ G  R LI TD+ AR
Sbjct  286  KVDWLTEKM---------HARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLAR  336

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
            GID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V  E +++   +     + 
Sbjct  337  GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDI-----ET  391

Query  638  CYNTRLKE  645
             YNT ++E
Sbjct  392  FYNTTVEE  399


 Score = 92.5 bits (228),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 21/107 (20%), Positives = 41/107 (38%), Gaps = 9/107 (8%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +M +   + + +    +  P+ IQ  +I   + G DV+  A++G+GKT  F+I ++Q 
Sbjct  36   FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ  95

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLC  110
            +    K+ Q             +   +          A        C
Sbjct  96   LEIEFKETQ---------ALVLAPTRELAQQIQKVILALGDYMGATC  133


>sp|Q6FW42|DRS1_CANGA ATP-dependent RNA helicase DRS1 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DRS1 PE=3 SV=1
Length=725

 Score = 307 bits (787),  Expect = 1e-92, Method: Composition-based stats.
 Identities = 102/506 (20%), Positives = 195/506 (39%), Gaps = 67/506 (13%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K   DL L+  +   + N        +++A +                 +A +    G  
Sbjct  206  KTFNDLALSRPVMKGLSNLGYVKPSPIQSATIPIAL--------LGKDIIAGAVTGSGKT  257

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
                     ++        + + +++ P+RELA Q  +  K+  +++ N  L   L +GG
Sbjct  258  AAFMIPIIERLLYKPAKVASTRVIVLTPTRELAIQVADVGKKIGQFVSN--LTFGLAVGG  315

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            +  R Q  +L+   DIV+ TPGR  D + ++   N+  V  LV+DEAD +L  G+ D +N
Sbjct  316  LNLRQQEQMLKTRPDIVIATPGRFIDHIRNSASFNVDSVEVLVIDEADRMLEDGFQDELN  375

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
             + + +P       + Q ++ SAT++S  +K+L    +  P  + +         +    
Sbjct  376  EIMSLLP------SKRQTLLFSATMNSR-IKQLISLSLKRPVRIMIDPPKQAATKLTQEF  428

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
            V +  +       L                                      +R +  + 
Sbjct  429  VRIRKRDHLKPSLLFN-----------------------------------LIRKLDPNG  453

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
              + ++F   K     L       G          +   LHG     +R  ++ +FK   
Sbjct  454  QKRIVVFVARKDMAHKLRIILGLLG---------MAVAELHGSLTQEQRLDSVNKFKSLQ  504

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            V  LICTD+A+RG+DI  +  VIN  +P   + Y+HR+GR  RA R G +I+ V     +
Sbjct  505  VPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSITFVGEASAE  564

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFD  685
                  + RG         +  G  + +N+++  ++I E+++ T+  +  + K       
Sbjct  565  RSIVKDAIRGVNDSEIPGSKAVGRNVDWNQVEETNKIVENMDQTVQDILVEEKEE-----  619

Query  686  GKVTYGQKRAAGGGSYKGHVDILAPT  711
             ++   +     G +   H D +   
Sbjct  620  KEILRAEMELKKGENLLKHKDEIQSR  645


 Score = 101 bits (252),  Expect = 5e-21, Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 6/108 (6%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F+++ +   + + +  + ++ P+ IQ+ +IP+ L G D++  A TGSGKT AF IP+I
Sbjct  206  KTFNDLALSRPVMKGLSNLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPII  265

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGL  109
            + +           K  +T     +   +  +   D G         L
Sbjct  266  ERLLYKP------AKVASTRVIVLTPTRELAIQVADVGKKIGQFVSNL  307


>sp|A5DKW3|DRS1_PICGU ATP-dependent RNA helicase DRS1 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DRS1 PE=3 
SV=2
Length=705

 Score = 307 bits (786),  Expect = 1e-92, Method: Composition-based stats.
 Identities = 113/542 (21%), Positives = 210/542 (39%), Gaps = 73/542 (13%)

Query  199  DKGHVKFSKNGKDLGLA----FEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDG  254
            D+   + S+N +D   A    +E     +    F A  L    LK   G   +  P    
Sbjct  167  DEQEQEISENDEDSAAAIAEFYEESKTTEKITSFQALQLSRPLLK-GVGNLGYTVPSAIQ  225

Query  255  FVALSKAPDGYIVKSQHSGNAQVTQTKFLP------------NAPKALIVEPSRELAEQT  302
              ++  A  G  + +     +  T    +P            +A + +++ P+RELA Q 
Sbjct  226  AASIPIAMMGKDIVAGAVTGSGKTAAYLIPIIERLIYKPAAVSATRVIVLTPTRELAIQV  285

Query  303  LNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNL  361
             +  K+  +++ N  L   L +GG+  R Q   L++  DIVV TPGRL D + ++   ++
Sbjct  286  CDVGKKLGQFVAN--LNFGLAVGGLNLRQQEQQLKSRPDIVVATPGRLIDHIRNSPSFSI  343

Query  362  SQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEK  421
              +  LV+DEAD +L +G+   +  +   IP+      + Q ++ SAT+++  ++ L + 
Sbjct  344  ENLEVLVMDEADRMLEEGFQVELTEILELIPK-----HKRQTMLFSATMNT-KIQDLIQL  397

Query  422  IMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANS  481
             +  P  + +         +    V +  +       L                      
Sbjct  398  SLDKPVRIMVNPPKQAASKLVQEFVRIRKREHLKPALL----------------------  435

Query  482  PEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFS  541
                          + +R +   + ++ ++F   K     L       G           
Sbjct  436  -------------YHLLRLVDPQQQNRIVVFVSRKEMAHRLRIVLGLLG---------MK  473

Query  542  CVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH  601
               LHG     +R Q+++ F+   V  LICTD+AARG+DI  +  VIN  +P   + Y+H
Sbjct  474  VSELHGSLTQEQRLQSVKDFRSLAVPVLICTDLAARGLDIPKIEIVINFDMPKTHEIYLH  533

Query  602  RIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE  661
            R+GR  RA R G +I+ V    +     +     K     +  +    T+ + +++ L+ 
Sbjct  534  RVGRTARAGREGRSITFVGESNQD--RSIVKDAIKSLEEQKNGKAVSRTVDWKKVEELNS  591

Query  662  IEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKE  721
            I E    TI +V  + K   +    ++   +         + H        Q     +K+
Sbjct  592  IVESKKDTIDEVLEEEKSAKEILQAEMQLEKASNIMKHEKEIHSRPKRTWFQS-EQEKKQ  650

Query  722  AQ  723
            AQ
Sbjct  651  AQ  652


 Score = 98.3 bits (243),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 26/109 (24%), Positives = 47/109 (43%), Gaps = 6/109 (6%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F  + +   + + V  + + +P+ IQA SIP+ + G D++  A TGSGKT A+ IP+
Sbjct  197  ITSFQALQLSRPLLKGVGNLGYTVPSAIQAASIPIAMMGKDIVAGAVTGSGKTAAYLIPI  256

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGL  109
            I+ +               T     +   +  +   D G         L
Sbjct  257  IERLIYKPAAV------SATRVIVLTPTRELAIQVCDVGKKLGQFVANL  299


>sp|B5BIS9|RHLB_SALPK ATP-dependent RNA helicase RhlB OS=Salmonella 
paratyphi A (strain AKU_12601) OX=554290 GN=rhlB PE=3 
SV=1
Length=421

 Score = 298 bits (763),  Expect = 1e-92, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 186/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +  +    ++   L                    ++   G  +   
Sbjct  13   DFALHPQVVEALEKKGFYNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQTKFLP----NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +     +     N P+ALI+ P+RELA Q   + +   +      L+  L  GG
Sbjct  65   TSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQ---ATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +V+++ E      +   + 
Sbjct  182  LFRRVPPAA----QRLNMLFSATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+++  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEDIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + S  G     ++   +         ++L
Sbjct  367  NLPAIESYIGHSIPVSKYNPEALMNDLPKPLRL  399


 Score = 99.8 bits (247),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 55/354 (16%), Positives = 119/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + +  G +
Sbjct  71   LLSHPAIDD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAQATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRVPPAAQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  +    ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|Q0HQL1|RHLB_SHESR ATP-dependent RNA helicase RhlB OS=Shewanella 
sp. (strain MR-7) OX=60481 GN=rhlB PE=3 SV=1
Length=439

 Score = 298 bits (764),  Expect = 1e-92, Method: Composition-based stats.
 Identities = 108/450 (24%), Positives = 179/450 (40%), Gaps = 71/450 (16%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
              DL L  E+   +          ++   L                    ++   G  + 
Sbjct  11   FADLPLHPEVKQALAENGFEFCTPIQALSLPVLL--------QSKDIAGQAQTGTGKTMA  62

Query  269  SQHSGNAQVTQTKF----LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
               +    +  T        N P+A+I+ P+RELA Q   +     K+     L+  ++ 
Sbjct  63   FLVATFNHLLSTPIPENRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTH---LKVGIVY  119

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG +   Q  VL+ GVDI++GT GR+ D V  G ++L+ ++ +VLDEAD +   G+   I
Sbjct  120  GGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIISLNAIQAVVLDEADRMFDLGFIKDI  179

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-H  443
              +  ++P    +  +   ++ SATL S  V++L+   M+ P  V++  E+     +   
Sbjct  180  RFLFRRMP----NADQRLNMLFSATL-SMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEE  234

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
            +  P      RL                                          +  I+E
Sbjct  235  IFYPSQEDKIRL-----------------------------------------LLTLIEE  253

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
               ++AI+F  TK  C+NL  +          +G       L GD    +R + LE+F +
Sbjct  254  DWPEKAIVFSNTKHSCENLWSWL---------EGDGHRVGLLTGDVPQKKRIRILEQFTQ  304

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
            G +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G+++S    E 
Sbjct  305  GQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEEY  364

Query  624  EKVWYHVCSSRGKGCYNTRLKEDGGCTIWY  653
                  + S        +    D       
Sbjct  365  ALNLPAIESYINHSIPVSNYDRDALLDDIP  394


 Score = 104 bits (260),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 62/353 (18%), Positives = 119/353 (34%), Gaps = 60/353 (17%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+++ + PE+ QA+ E  +   T IQA S+P++L   D+   A+TG+GKT AF +     
Sbjct  11   FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNH  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +  T     E ++         +   +  +    + +        L              
Sbjct  71   LLSTP--IPENRQLNQPRAIIMAPTRELAIQI-AKDAILLAKHTHLKV------------  115

Query  124  ATKGLMKGKHYYEV--SCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDN  181
               G++ G   Y+V     DQG+           + +GT      +   G  S N     
Sbjct  116  ---GIVYGGESYDVQRKVLDQGV----------DILIGTTGRIIDYVRQGIISLN-----  157

Query  182  YGEEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFEIPPHM---KNQALFPACVLKNAE  237
                          + +D+    F     KD+   F   P+     N        +K  E
Sbjct  158  ---AIQA-------VVLDEADRMFDLGFIKDIRFLFRRMPNADQRLNMLFSATLSMKVQE  207

Query  238  LKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRE  297
            L ++   +  K              +     SQ      +          KA++   ++ 
Sbjct  208  LAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQEDKIRLLLTLIEEDWPEKAIVFSNTK-  266

Query  298  LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                  ++ +    +++    R  L+ G V  + ++ +LE      +DI+V T
Sbjct  267  ------HSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDILVAT  313


>sp|Q0HN76|RHLB_SHESM ATP-dependent RNA helicase RhlB OS=Shewanella 
sp. (strain MR-4) OX=60480 GN=rhlB PE=3 SV=1
Length=439

 Score = 298 bits (764),  Expect = 1e-92, Method: Composition-based stats.
 Identities = 108/450 (24%), Positives = 179/450 (40%), Gaps = 71/450 (16%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
              DL L  E+   +          ++   L                    ++   G  + 
Sbjct  11   FADLPLHPEVKQALAENGFEFCTPIQALSLPVLL--------QSKDIAGQAQTGTGKTMA  62

Query  269  SQHSGNAQVTQTKF----LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
               +    +  T        N P+A+I+ P+RELA Q   +     K+     L+  ++ 
Sbjct  63   FLVATFNHLLSTPIPENRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTH---LKVGIVY  119

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG +   Q  VL+ GVDI++GT GR+ D V  G ++L+ ++ +VLDEAD +   G+   I
Sbjct  120  GGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIISLNAIQAVVLDEADRMFDLGFIKDI  179

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-H  443
              +  ++P    +  +   ++ SATL S  V++L+   M+ P  V++  E+     +   
Sbjct  180  RFLFRRMP----NADQRLNMLFSATL-SMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEE  234

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
            +  P      RL                                          +  I+E
Sbjct  235  IFYPSQEDKIRL-----------------------------------------LLTLIEE  253

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
               ++AI+F  TK  C+NL  +          +G       L GD    +R + LE+F +
Sbjct  254  DWPEKAIVFSNTKHSCENLWSWL---------EGDGHRVGLLTGDVPQKKRIRILEQFTQ  304

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
            G +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G+++S    E 
Sbjct  305  GQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEEY  364

Query  624  EKVWYHVCSSRGKGCYNTRLKEDGGCTIWY  653
                  + S        +    D       
Sbjct  365  ALNLPAIESYINHSIPVSNYDRDALLDDIP  394


 Score = 104 bits (260),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 62/353 (18%), Positives = 119/353 (34%), Gaps = 60/353 (17%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+++ + PE+ QA+ E  +   T IQA S+P++L   D+   A+TG+GKT AF +     
Sbjct  11   FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNH  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +  T     E ++         +   +  +    + +        L              
Sbjct  71   LLSTP--IPENRQLNQPRAIIMAPTRELAIQI-AKDAILLAKHTHLKV------------  115

Query  124  ATKGLMKGKHYYEV--SCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDN  181
               G++ G   Y+V     DQG+           + +GT      +   G  S N     
Sbjct  116  ---GIVYGGESYDVQRKVLDQGV----------DILIGTTGRIIDYVRQGIISLN-----  157

Query  182  YGEEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFEIPPHM---KNQALFPACVLKNAE  237
                          + +D+    F     KD+   F   P+     N        +K  E
Sbjct  158  ---AIQA-------VVLDEADRMFDLGFIKDIRFLFRRMPNADQRLNMLFSATLSMKVQE  207

Query  238  LKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRE  297
            L ++   +  K              +     SQ      +          KA++   ++ 
Sbjct  208  LAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQEDKIRLLLTLIEEDWPEKAIVFSNTK-  266

Query  298  LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                  ++ +    +++    R  L+ G V  + ++ +LE      +DI+V T
Sbjct  267  ------HSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDILVAT  313


>sp|Q6YS30|RH5_ORYSJ DEAD-box ATP-dependent RNA helicase 5 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os07g0301200 PE=2 SV=1
Length=512

 Score = 301 bits (770),  Expect = 1e-92, Method: Composition-based stats.
 Identities = 113/477 (24%), Positives = 194/477 (41%), Gaps = 79/477 (17%)

Query  228  FPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNA------------  275
            F A  L    L    G E         +  L    D   + +  SG              
Sbjct  96   FAATALPPQVLDCCKGFERPSPIQAYAWPYLLDGRDFIGIAATGSGKTIAFGVPALMHVR  155

Query  276  -QVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLS  334
             ++ +       P+ L++ P+RELA+Q  + + +         +  + + GG +   Q+S
Sbjct  156  RKMGEKSAKKGVPRVLVLSPTRELAQQIADVLCEAGAPCG---ISSVCLYGGTSKGPQIS  212

Query  335  VLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV  394
             L++GVDIV+GTPGR+ DL+  G   L+ V F+VLDEAD +L  G+   +  + +Q    
Sbjct  213  ALKSGVDIVIGTPGRMKDLIEMGICRLNDVSFVVLDEADRMLDMGFEPEVRAILSQ----  268

Query  395  TSDGKRLQVIVCSATLHSFDVKKLSEKIM-HFPTWVDLKGEDSVPD-TVHHVVVPVN--P  450
                   Q ++ SAT     V +L+++ M   P  V +  ED   +  V  +V  ++   
Sbjct  269  --TASVRQTVMFSATWPPA-VHQLAQEFMDPNPIKVVIGSEDLAANHDVMQIVEVLDDRS  325

Query  451  KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAI  510
            +  RL   L K H                                       + + ++ +
Sbjct  326  RDSRLVALLDKYH---------------------------------------KAQRNRVL  346

Query  511  IFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLI  570
            +F   K +   +E    ++G         +S V +HGD+  H+R + L  FK+G    +I
Sbjct  347  VFVLYKREATRVETMLQRRG---------WSAVSVHGDKAQHDRTKALSLFKEGSCPLMI  397

Query  571  CTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
             TDVA+RG+DI  V  VIN + P   ++YVHRIGR GRA + G+A +    E + +   +
Sbjct  398  ATDVASRGLDIPDVEVVINYSYPLTTEDYVHRIGRTGRAGKKGVAHTFFTQENKGLAGEL  457

Query  631  CSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIE-EHLNCTISQVEPDIKVPVDEFDG  686
             +   +     ++          +  +  S+I   H     +      K+   + D 
Sbjct  458  VNVLREAG---QVVPPALTKFGTHVKKKESQIYGSHFKEIKADAPKSTKITFGDSDE  511


 Score = 96.7 bits (239),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 30/146 (21%), Positives = 55/146 (38%), Gaps = 9/146 (6%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +++F+   + P++    +   +  P+ IQA + P +L G D +  A TGSGKT AF +P 
Sbjct  93   LSSFAATALPPQVLDCCK--GFERPSPIQAYAWPYLLDGRDFIGIAATGSGKTIAFGVPA  150

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120
            +  V   + ++    K         S   +      D      +   G  C    V  + 
Sbjct  151  LMHVRRKMGEK--SAKKGVPRVLVLSPTRELAQQIADV-----LCEAGAPCGISSVCLYG  203

Query  121  GCRATKGLMKGKHYYEVSCHDQGLCR  146
            G      +   K   ++     G  +
Sbjct  204  GTSKGPQISALKSGVDIVIGTPGRMK  229


>sp|B5FN74|RHLB_SALDC ATP-dependent RNA helicase RhlB OS=Salmonella 
dublin (strain CT_02021853) OX=439851 GN=rhlB PE=3 SV=1
Length=421

 Score = 298 bits (762),  Expect = 2e-92, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 186/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +  +    ++   L                    ++   G  +   
Sbjct  13   DFALHPQVVEALEKKRFYNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQTKFLP----NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +     +     N P+ALI+ P+RELA Q   + +   +      L+  L  GG
Sbjct  65   TSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQ---ATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +V+++ E      +   + 
Sbjct  182  LFRRMPPAA----QRLNMLFSATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+++  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEDIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + S  G     ++   +         ++L
Sbjct  367  NLPAIESYIGHSIPVSKYNPEALMNDLPKPLRL  399


 Score = 96.4 bits (238),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 55/354 (16%), Positives = 119/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPQVVEALEKKRFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + +  G +
Sbjct  71   LLSHPAIDD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAQATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPAAQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  +    ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|A6VKC3|RHLB_ACTSZ ATP-dependent RNA helicase RhlB OS=Actinobacillus 
succinogenes (strain ATCC 55618 / DSM 22257 / CCUG 
43843 / 130Z) OX=339671 GN=rhlB PE=3 SV=1
Length=413

 Score = 297 bits (761),  Expect = 2e-92, Method: Composition-based stats.
 Identities = 112/448 (25%), Positives = 183/448 (41%), Gaps = 67/448 (15%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
              DL L  +I   + +Q       ++   L                    ++   G  + 
Sbjct  11   FADLPLHPQILAALNDQNFEYCTPIQALSLPLTL--------QGKDVAGQAQTGTGKTMA  62

Query  269  SQHSGNAQVT--QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
               +    +   Q  F+ N P+ALI+ P+RELA Q  ++ +   +     KLR  L  GG
Sbjct  63   FLTATFHHLLTHQPDFITNQPRALILAPTRELAVQIAHDAESLAQ---TTKLRIALAYGG  119

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL  +ENGVDI++GT GR+ D V  G +  + ++ +VLDEAD +   G+   I  
Sbjct  120  DGYDKQLKTIENGVDILIGTTGRVIDYVKQGIIRFNDIQVVVLDEADRMFDLGFIKDIRY  179

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVV  446
            +  + P      K    ++ SATL S+ V++L+ + M+ P +++++              
Sbjct  180  LLRKCPA----PKSRLTMLFSATL-SYKVRELAFEDMNDPEYIEIE--------------  220

Query  447  PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM  506
            P+     R+ E L     R                           K    +  ++E   
Sbjct  221  PLQKTGHRIKEELFYPSNRD--------------------------KMALLMTLLEEEWP  254

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
            ++ IIF  TK  C+ +  Y    G              L GD    +R   L++F  G++
Sbjct  255  ERCIIFANTKHRCEEIWGYLAADGQ---------RVGLLTGDVAQKKRLALLKQFTDGEL  305

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
              L+ TDVAARG+ I  V +V N  LPD++++YVHRIGR GRA   G++IS    +    
Sbjct  306  DILVATDVAARGLHIPDVTHVFNYDLPDDREDYVHRIGRTGRAGESGMSISFACEQYAMN  365

Query  627  WYHVCSSRGKGCYNTRLKEDGGCTIWYN  654
               +    G     ++   D        
Sbjct  366  LPAIEEYIGHHIPVSQYDPDSLINDLPK  393


 Score = 101 bits (251),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 60/353 (17%), Positives = 111/353 (31%), Gaps = 62/353 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+++ + P+I  A+ + ++   T IQA S+PL L G DV   A+TG+GKT AF       
Sbjct  11   FADLPLHPQILAALNDQNFEYCTPIQALSLPLTLQGKDVAGQAQTGTGKTMAFLTATFHH  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +       Q             +   +  +               +   +  + +    R
Sbjct  71   LLTH----QPDFITNQPRALILAPTRELAVQ--------------IAHDAESLAQTTKLR  112

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT      +   G    N       
Sbjct  113  IALAYGGDGYDKQLKTIENGV----------DILIGTTGRVIDYVKQGIIRFN-------  155

Query  184  EEFTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFN  241
                  D     LD       + F K+ + L      P              K  EL F 
Sbjct  156  ------DIQVVVLDEADRMFDLGFIKDIRYLLRKCPAPKSRLTMLFSATLSYKVRELAF-  208

Query  242  FGEEEFKFPPKDGFVALSKAPDGYIVK-SQHSGNAQVTQTKFLPNA---PKALIVEPSRE  297
               E+   P       L K       +    S   ++     L       + +I   ++ 
Sbjct  209  ---EDMNDPEYIEIEPLQKTGHRIKEELFYPSNRDKMALLMTLLEEEWPERCIIFANTK-  264

Query  298  LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                  +  ++   Y+     R  L+ G VA + +L++L+      +DI+V T
Sbjct  265  ------HRCEEIWGYLAADGQRVGLLTGDVAQKKRLALLKQFTDGELDILVAT  311


>sp|A6SCT6|DBP3_BOTFB ATP-dependent RNA helicase dbp3 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=dbp3 PE=3 SV=1
Length=592

 Score = 303 bits (776),  Expect = 2e-92, Method: Composition-based stats.
 Identities = 115/426 (27%), Positives = 183/426 (43%), Gaps = 62/426 (15%)

Query  216  FEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI-VKSQHSGN  274
                  ++    F    + +   +  F + +   P +        A    I V    SG 
Sbjct  177  LSTSATLRPLTKFDYLPITDPAQRAPFKDFKAPTPIQAAAWPFLLAGRDVIGVAETGSGK  236

Query  275  AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLS  334
                    +   P+A++V P+RELA Q+   I +  K      L  + + GGV   +Q+ 
Sbjct  237  TMAFAVPCINKGPRAVVVSPTRELAMQSYEQIVKLAK---ASGLECVCVYGGVPKDEQIR  293

Query  335  VLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV  394
             L+   DIVV TPGRL+DL++ G  +LS+ R++VLDEAD +L +G+ + I ++ N  P +
Sbjct  294  ALKT-ADIVVATPGRLNDLINQGCADLSKARYVVLDEADRMLDKGFEEEIRKIINTTPSL  352

Query  395  TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK----GEDSVPDTVHHVVVPVNP  450
                 + Q ++ +AT     V++L+   M  P  + +     G+      +   V  V P
Sbjct  353  G----KRQTLMFTATWP-ESVRELAATFMTSPVKIAIGDNPTGDLRANSRIVQKVEVVEP  407

Query  451  --KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
              K  RL + L +                                           K D+
Sbjct  408  RDKEYRLMQLLKQ-------------------------------------YQSGSQKDDR  430

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
             ++FC  K +   +E +  Q+G         F    +HGD    +R ++LE FK G+   
Sbjct  431  ILVFCLYKKEATRVESFIRQKG---------FRVAGIHGDLSQEQRTRSLEAFKSGNTPV  481

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            L+ TDVAARG+DI  V  VIN T P   ++YVHRIGR GRA + GLAI+L     +    
Sbjct  482  LVATDVAARGLDIPAVKLVINCTFPLTVEDYVHRIGRTGRAGKDGLAITLFTEHDKAQSG  541

Query  629  HVCSSR  634
             + +  
Sbjct  542  ALINVL  547


 Score = 92.5 bits (228),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 38/141 (27%), Positives = 54/141 (38%), Gaps = 26/141 (18%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F  + +     +A  + D+  PT IQA + P +L G DV+  AETGSGKT AF++P 
Sbjct  186  LTKFDYLPITDPAQRAPFK-DFKAPTPIQAAAWPFLLAGRDVIGVAETGSGKTMAFAVPC  244

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC---------  111
            I                K       S   +  M  Y++    A  S   C          
Sbjct  245  I---------------NKGPRAVVVSPTRELAMQSYEQIVKLAKASGLECVCVYGGVPKD  289

Query  112  -QSREVKEWHGCRATKGLMKG  131
             Q R +K      AT G +  
Sbjct  290  EQIRALKTADIVVATPGRLND  310


>sp|Q2UHC1|DBP10_ASPOR ATP-dependent RNA helicase dbp10 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp10 
PE=3 SV=1
Length=929

 Score = 312 bits (798),  Expect = 2e-92, Method: Composition-based stats.
 Identities = 121/485 (25%), Positives = 194/485 (40%), Gaps = 36/485 (7%)

Query  222  MKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTK  281
            +K    F A  L NA L      + F  P       +    DG  V       +  T   
Sbjct  85   VKKGGGFQAMGL-NAHLLKAITRKGFSVPTPIQRKTIPVIMDGQDVVGMARTGSGKTAAF  143

Query  282  FLPN-----------APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
             +P              + LI+ PSRELA QTL  +K+  K      L+ +L++GG +  
Sbjct  144  VIPMIEKLKSHSTKVGARGLILSPSRELALQTLKVVKELGK---GTDLKSVLLVGGDSLE  200

Query  331  DQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ  390
            +Q S++    DIV+ TPGR   L     L+LS +R++V DEAD L   G++D +  +   
Sbjct  201  EQFSLMAGNPDIVIATPGRFLHLKVEMNLDLSSIRYVVFDEADRLFEMGFADQLTEILYG  260

Query  391  IPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNP  450
            +P         Q ++ SATL    V+  +   +  PT + L  E  +   + +V   V  
Sbjct  261  LPA------NRQTLLFSATLPKSLVE-FARAGLQEPTLIRLDTESKISPDLENVFFSVKS  313

Query  451  --KTDRLWERLGK-SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
              K   L   L +   + T    A    +   +     +   +    + A+   +     
Sbjct  314  SEKEGALLHILHEVIKMPTGPTEAAQRQKEQGDGKNFKNFKKRKRGDDKAINFQESPTKY  373

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
              I+F  TK   D L     + G         F+    +G      RK  ++ F+ G   
Sbjct  374  STIVFAATKHHVDYLYSLLREAG---------FAVSYAYGSLDQTARKIQVQNFRAGLSN  424

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             L+ TDVAARGIDI  +  VIN   P + + +VHR+GR  RA R G + SLV        
Sbjct  425  ILVVTDVAARGIDIPILANVINYDFPSQPKIFVHRVGRTARAGRKGWSYSLVRDADAPYM  484

Query  628  YHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGK  687
              +    G+     R  E G    +  ++ + S   + L+ +   V   ++   D +  +
Sbjct  485  LDLQLFLGRRLVIGR--EHGDQVNFAEDVVVGSLPRDGLSTSCEWVTKVLENEADIYSQR  542

Query  688  VTYGQ  692
               G+
Sbjct  543  TIAGK  547


 Score = 103 bits (257),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 31/104 (30%), Positives = 50/104 (48%), Gaps = 7/104 (7%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F  MG+   + +A+    + +PT IQ ++IP+I+ G DV+  A TGSGKT AF IP+I+ 
Sbjct  91   FQAMGLNAHLLKAITRKGFSVPTPIQRKTIPVIMDGQDVVGMARTGSGKTAAFVIPMIEK  150

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            +       + G +G        S   +  +           G+D
Sbjct  151  LKSH--STKVGARG-----LILSPSRELALQTLKVVKELGKGTD  187


>sp|Q0D1K3|PRP5_ASPTN Pre-mRNA-processing ATP-dependent RNA helicase 
prp5 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) 
OX=341663 GN=prp5 PE=3 SV=1
Length=1181

 Score = 316 bits (809),  Expect = 2e-92, Method: Composition-based stats.
 Identities = 105/458 (23%), Positives = 191/458 (42%), Gaps = 90/458 (20%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN--APKALIVEPSRELAEQTLN  304
                     + ++K   G  V         +   + L N   P  LI+ P+RELA Q   
Sbjct  581  PAIMSGRDVIGVAKTGSGKTVAFLIPMFRHIKDQRPLENMEGPIGLIMTPTRELATQIHK  640

Query  305  NIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGK---LNL  361
            + K F K ++   LR +   GG   +DQ++ L+ G +IVV TPGR+ DL++       NL
Sbjct  641  DCKPFLKALN---LRAVCAYGGAPIKDQIAELKRGAEIVVCTPGRMIDLLAANAGRVTNL  697

Query  362  SQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEK  421
             +V ++VLDEAD +   G+   + ++   +          Q ++ SAT    +++ L+ K
Sbjct  698  RRVTYVVLDEADRMFDMGFEPQVMKIMANV------RPDRQTVLFSATFP-RNMEALARK  750

Query  422  IMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANS  481
             ++ P  + + G+  V   +  +V   N                                
Sbjct  751  TLNKPVEIVVGGKSVVAPEITQIVEVRNED------------------------------  780

Query  482  PEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFS  541
                 + +++L+    + +  E++  +A+IF   +   D L +  +++G         + 
Sbjct  781  ----KKFVRLLELLGNLYSSDENEDARALIFVERQEAADTLLRELMRKG---------YP  827

Query  542  CVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH  601
            C+ +HG +   +R   +E FK G    LI T VAARG+D+  +  V+N   P+  ++YVH
Sbjct  828  CMSIHGGKDQIDRDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVH  887

Query  602  RIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE  661
            R GR GRA   G A++ +  ++E+    +  +                            
Sbjct  888  RAGRTGRAGNTGTAVTFLTEDQERFSVDIAKA----------------------------  919

Query  662  IEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGG  699
                L  +  +V   ++  VD F  KV  G+++A+  G
Sbjct  920  ----LKQSGQKVPEPVQQMVDSFLEKVKAGKEKASASG  953


 Score = 109 bits (271),  Expect = 5e-23, Method: Composition-based stats.
 Identities = 61/374 (16%), Positives = 131/374 (35%), Gaps = 53/374 (14%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  +S+ G+  +    ++ + +  PT IQ+++IP I+ G DV+  A+TGSGKT AF IP+
Sbjct  548  VQKWSQCGLGVQTLDVIDRLGYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTVAFLIPM  607

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF--AIGSDGLCCQSREVKE  118
             + +    KDQ+  +  +  I    +   +     +     F  A+    +C       +
Sbjct  608  FRHI----KDQRPLENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIK  663

Query  119  WHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQ  178
                   +G        E+     G   +      A       +  +       +  +  
Sbjct  664  DQIAELKRGA-------EIVVCTPGRM-IDLLAANAGRVTNLRRVTYVVLDEADRMFDMG  715

Query  179  FDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAEL  238
            F+    +   +      +  D+  V FS               +  + L       N  +
Sbjct  716  FEPQVMKIMAN------VRPDRQTVLFSATF------PRNMEALARKTL-------NKPV  756

Query  239  KFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSREL  298
            +   G +    P     V +      ++   +  GN  +  +    +A +ALI    +E 
Sbjct  757  EIVVGGKSVVAPEITQIVEVRNEDKKFVRLLELLGN--LYSSDENEDA-RALIFVERQEA  813

Query  299  AEQTLNNIKQFKKYIDNPKLRELLIIGG---VAARDQLSVLENGV-DIVVGTPGRLDDLV  354
            A+          + +       + I GG   +     +   + G+  +++ T       V
Sbjct  814  AD-------TLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIAT------SV  860

Query  355  STGKLNLSQVRFLV  368
            +   L++ Q++ +V
Sbjct  861  AARGLDVKQLKLVV  874


>sp|Q9HXE5|RHLB_PSEAE ATP-dependent RNA helicase RhlB OS=Pseudomonas 
aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 
/ JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=rhlB 
PE=3 SV=1
Length=397

 Score = 297 bits (760),  Expect = 2e-92, Method: Composition-based stats.
 Identities = 112/448 (25%), Positives = 181/448 (40%), Gaps = 74/448 (17%)

Query  195  YLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDG  254
             ++  +G  +F     D  LA  +   + +        ++   L F    ++        
Sbjct  1    MVEPQEGKTRF----HDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQD--------  48

Query  255  FVALSKAPDGYIVKSQHSGNAQVTQTKFLP----NAPKALIVEPSRELAEQTLNNIKQFK  310
             +  ++   G       S   Q+ QT          P+ALI+ P+REL  Q   +     
Sbjct  49   AIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALT  108

Query  311  KYIDNPKLRELLIIGGVAARDQLSVLENG-VDIVVGTPGRLDDLVSTGKLNLSQVRFLVL  369
            KY     L  +  +GG+    QL  LE    DI+V TPGRL D    G+++L  V  +VL
Sbjct  109  KYTG---LNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVL  165

Query  370  DEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWV  429
            DEAD +L  G+   + ++  Q P         Q ++ SAT    DV  L+++    P  V
Sbjct  166  DEADRMLDMGFIPQVRQIIRQTPH----KGERQTLLFSATFTD-DVMNLAKQWTVDPAIV  220

Query  430  DLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAI  489
            +++ E+   DTV   V  V                                         
Sbjct  221  EIEPENVASDTVEQHVYAVAGSD-------------------------------------  243

Query  490  KILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDR  549
               K +     + ++  ++ ++F   K +   +E+   + G          S   + GD 
Sbjct  244  ---KYKLLYNLVAQNNWERVMVFANRKDEVRRIEERLTKDG---------ISAAQMSGDV  291

Query  550  KPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA  609
              H+R + LE F++G +R L+ TDVA RGI I G+ +VIN TLP++  +YVHRIGR GRA
Sbjct  292  PQHKRIRTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRA  351

Query  610  ERMGLAISLVATEKEKVWYHVCSSRGKG  637
               G +IS    +       +    G+ 
Sbjct  352  GASGTSISFAGEDDAFALPPIEELLGRK  379


 Score = 90.6 bits (223),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 42/94 (45%), Gaps = 2/94 (2%)

Query  2   AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             F +  + P +  A+ ++ +   T IQA+ +   L G D +  A+TG+GKT AF I +I
Sbjct  9   TRFHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISII  68

Query  62  QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNP  95
             + +T   ++  +          +   +  +  
Sbjct  69  TQLLQTPPPKE--RYMGEPRALIIAPTRELVVQI  100


>sp|Q02S21|RHLB_PSEAB ATP-dependent RNA helicase RhlB OS=Pseudomonas 
aeruginosa (strain UCBPP-PA14) OX=208963 GN=rhlB PE=3 
SV=1
Length=397

 Score = 297 bits (760),  Expect = 2e-92, Method: Composition-based stats.
 Identities = 112/448 (25%), Positives = 181/448 (40%), Gaps = 74/448 (17%)

Query  195  YLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDG  254
             ++  +G  +F     D  LA  +   + +        ++   L F    ++        
Sbjct  1    MVEPQEGKTRF----HDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQD--------  48

Query  255  FVALSKAPDGYIVKSQHSGNAQVTQTKFLP----NAPKALIVEPSRELAEQTLNNIKQFK  310
             +  ++   G       S   Q+ QT          P+ALI+ P+REL  Q   +     
Sbjct  49   AIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALT  108

Query  311  KYIDNPKLRELLIIGGVAARDQLSVLENG-VDIVVGTPGRLDDLVSTGKLNLSQVRFLVL  369
            KY     L  +  +GG+    QL  LE    DI+V TPGRL D    G+++L  V  +VL
Sbjct  109  KYTG---LNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVL  165

Query  370  DEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWV  429
            DEAD +L  G+   + ++  Q P         Q ++ SAT    DV  L+++    P  V
Sbjct  166  DEADRMLDMGFIPQVRQIIRQTPH----KGERQTLLFSATFTD-DVMNLAKQWTVDPAIV  220

Query  430  DLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAI  489
            +++ E+   DTV   V  V                                         
Sbjct  221  EIEPENVASDTVEQHVYAVAGSD-------------------------------------  243

Query  490  KILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDR  549
               K +     + ++  ++ ++F   K +   +E+   + G          S   + GD 
Sbjct  244  ---KYKLLYNLVAQNNWERVMVFANRKDEVRRIEERLTKDG---------ISAAQMSGDV  291

Query  550  KPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA  609
              H+R + LE F++G +R L+ TDVA RGI I G+ +VIN TLP++  +YVHRIGR GRA
Sbjct  292  PQHKRIRTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRA  351

Query  610  ERMGLAISLVATEKEKVWYHVCSSRGKG  637
               G +IS    +       +    G+ 
Sbjct  352  GASGTSISFAGEDDAFALPPIEELLGRK  379


 Score = 90.6 bits (223),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 42/94 (45%), Gaps = 2/94 (2%)

Query  2   AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             F +  + P +  A+ ++ +   T IQA+ +   L G D +  A+TG+GKT AF I +I
Sbjct  9   TRFHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISII  68

Query  62  QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNP  95
             + +T   ++  +          +   +  +  
Sbjct  69  TQLLQTPPPKE--RYMGEPRALIIAPTRELVVQI  100


>sp|B7UUT0|RHLB_PSEA8 ATP-dependent RNA helicase RhlB OS=Pseudomonas 
aeruginosa (strain LESB58) OX=557722 GN=rhlB PE=3 SV=1
Length=397

 Score = 297 bits (760),  Expect = 2e-92, Method: Composition-based stats.
 Identities = 112/448 (25%), Positives = 181/448 (40%), Gaps = 74/448 (17%)

Query  195  YLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDG  254
             ++  +G  +F     D  LA  +   + +        ++   L F    ++        
Sbjct  1    MVEPQEGKTRF----HDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQD--------  48

Query  255  FVALSKAPDGYIVKSQHSGNAQVTQTKFLP----NAPKALIVEPSRELAEQTLNNIKQFK  310
             +  ++   G       S   Q+ QT          P+ALI+ P+REL  Q   +     
Sbjct  49   AIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALT  108

Query  311  KYIDNPKLRELLIIGGVAARDQLSVLENG-VDIVVGTPGRLDDLVSTGKLNLSQVRFLVL  369
            KY     L  +  +GG+    QL  LE    DI+V TPGRL D    G+++L  V  +VL
Sbjct  109  KYTG---LNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVL  165

Query  370  DEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWV  429
            DEAD +L  G+   + ++  Q P         Q ++ SAT    DV  L+++    P  V
Sbjct  166  DEADRMLDMGFIPQVRQIIRQTPH----KGERQTLLFSATFTD-DVMNLAKQWTVDPAIV  220

Query  430  DLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAI  489
            +++ E+   DTV   V  V                                         
Sbjct  221  EIEPENVASDTVEQHVYAVAGSD-------------------------------------  243

Query  490  KILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDR  549
               K +     + ++  ++ ++F   K +   +E+   + G          S   + GD 
Sbjct  244  ---KYKLLYNLVAQNNWERVMVFANRKDEVRRIEERLTKDG---------ISAAQMSGDV  291

Query  550  KPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA  609
              H+R + LE F++G +R L+ TDVA RGI I G+ +VIN TLP++  +YVHRIGR GRA
Sbjct  292  PQHKRIRTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRA  351

Query  610  ERMGLAISLVATEKEKVWYHVCSSRGKG  637
               G +IS    +       +    G+ 
Sbjct  352  GASGTSISFAGEDDAFALPPIEELLGRK  379


 Score = 90.6 bits (223),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 42/94 (45%), Gaps = 2/94 (2%)

Query  2   AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             F +  + P +  A+ ++ +   T IQA+ +   L G D +  A+TG+GKT AF I +I
Sbjct  9   TRFHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISII  68

Query  62  QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNP  95
             + +T   ++  +          +   +  +  
Sbjct  69  TQLLQTPPPKE--RYMGEPRALIIAPTRELVVQI  100


>sp|Q87KH5|RHLB_VIBPA ATP-dependent RNA helicase RhlB OS=Vibrio 
parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926 
GN=rhlB PE=3 SV=1
Length=437

 Score = 298 bits (763),  Expect = 2e-92, Method: Composition-based stats.
 Identities = 112/419 (27%), Positives = 181/419 (43%), Gaps = 71/419 (17%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
              DLGL  ++   ++ +       ++   L      ++            ++   G  + 
Sbjct  11   FADLGLQPQVTEGLEKKGFEYCTPIQALALPVLLTGQD--------IAGQAQTGTGKTLA  62

Query  269  SQHSGNAQVTQTKF----LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
               +    +  T       P  P+A+I+ P+RELA Q  N+ +     I +  L+  L  
Sbjct  63   FLTATFNHLLTTPEHEGRQPTQPRAIIMAPTRELAIQIFNDAEPL---IASTGLKAALAY  119

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG +   QL+ L++GVDI++GT GR+ D       NL+ ++ +VLDEAD +   G+   I
Sbjct  120  GGESYDKQLAKLQDGVDILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDI  179

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-H  443
              +  ++P+     K    ++ SATL S+ V++L+ + MH P  V ++        +   
Sbjct  180  RFLFRRMPE----PKERLNMLFSATL-SYRVQELAFEHMHNPEHVVVEPAQKTGHRIQEE  234

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
            +  P N     L + L                                         I+E
Sbjct  235  LFYPSNEDKMALLQTL-----------------------------------------IEE  253

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
               D+AI+F  TK  C+++  +    G              L GD    +R++ LE+F K
Sbjct  254  EWPDRAIVFANTKHKCESVWGHLAADG---------HRVGLLTGDVPQKKREKILEQFTK  304

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            GDV  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +IS    E
Sbjct  305  GDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEE  363


 Score = 102 bits (253),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 56/352 (16%), Positives = 118/352 (34%), Gaps = 58/352 (16%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+++G+ P++ + +E+  +   T IQA ++P++L G D+   A+TG+GKT AF       
Sbjct  11   FADLGLQPQVTEGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +  T   + EG++         +   +  +  ++               +  +    G +
Sbjct  71   LLTTP--EHEGRQPTQPRAIIMAPTRELAIQIFN--------------DAEPLIASTGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
            A        +  +++    G+           + +GT                +  D Y 
Sbjct  115  AALAYGGESYDKQLAKLQDGV----------DILIGTTG--------------RIIDFYK  150

Query  184  EE-FTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFE---IPPHMKNQALFPACVLKNAEL  238
            +  F +++     LD  +    F     KD+   F     P    N         +  EL
Sbjct  151  QRVFNLNNIQAVVLD--EADRMFDLGFIKDIRFLFRRMPEPKERLNMLFSATLSYRVQEL  208

Query  239  KFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSREL  298
             F           +       +  +     S     A +          +A++   ++  
Sbjct  209  AFEHMHNPEHVVVEPAQKTGHRIQEELFYPSNEDKMALLQTLIEEEWPDRAIVFANTK--  266

Query  299  AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                 +  +    ++     R  L+ G V  + +  +LE      VDI+V T
Sbjct  267  -----HKCESVWGHLAADGHRVGLLTGDVPQKKREKILEQFTKGDVDILVAT  313


>sp|O25029|RHPA_HELPY DEAD-box ATP-dependent RNA helicase RhpA 
OS=Helicobacter pylori (strain ATCC 700392 / 26695) OX=85962 
GN=rhpA PE=1 SV=1
Length=492

 Score = 300 bits (768),  Expect = 2e-92, Method: Composition-based stats.
 Identities = 102/473 (22%), Positives = 190/473 (40%), Gaps = 67/473 (14%)

Query  228  FPACVLKNAELKFNF--GEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN  285
            F    LK + LK  +  G        +    A+ +  D        +G         + N
Sbjct  22   FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN  81

Query  286  -----APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGV  340
                   +AL++ P+RELA Q  + I +  K+    + + + + GG + + Q   ++   
Sbjct  82   LKNNHTIEALVITPTRELAMQISDEIFKLGKH---TRTKTVCVYGGQSVKKQCEFIKKNP  138

Query  341  DIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR  400
             +++ TPGRL D +   +++    + +VLDE+D +L  G+ D I  + + +P        
Sbjct  139  QVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEA-----  193

Query  401  LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLG  460
             Q+++ SAT+    +K+L++KI+  P  + +   +     +      +N           
Sbjct  194  -QILLFSATMPEP-IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHE--------  243

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
                                            + E  +R +      ++I+F RTK + D
Sbjct  244  --------------------------------RAEAIMRLLDTQAPKKSIVFTRTKKEAD  271

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             L Q+   +          +    LHGD    +R+ ++  FKK D   L+ TDVA+RG+D
Sbjct  272  ELHQFLASK---------NYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLD  322

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYN  640
            I GV +V N  LP   ++Y+HRIGR GRA + G+AI+LV   + K    +          
Sbjct  323  ISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIEL  382

Query  641  TRLKEDGGCTIWYNEMQL-LSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQ  692
              +       I        +SE    L   ++++    ++ +     +    +
Sbjct  383  FEIPTINENQIIKTLHDAKVSEGIISLYEQLTEIFEPSQLVLKLLSLQFETSK  435


 Score = 109 bits (273),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 10/102 (10%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F+++G+   + ++V E  +  P+ IQ ++IP +L G DV+  A+TG+GKT AF++P+I 
Sbjct  21   SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN  80

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
             +          K   T      +   +  M   D       
Sbjct  81   NL----------KNNHTIEALVITPTRELAMQISDEIFKLGK  112


>sp|B7LU75|RHLB_ESCF3 ATP-dependent RNA helicase RhlB OS=Escherichia 
fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 
/ IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 
/ CDC 0568-73) OX=585054 GN=rhlB PE=3 SV=1
Length=421

 Score = 297 bits (761),  Expect = 2e-92, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 184/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +       ++   L                    ++   G  +   
Sbjct  13   DFALHPKVVEALEKKGFHNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQ----TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +           N P+ALI+ P+RELA Q   + +   +      L+  L  GG
Sbjct  65   TSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQ---ATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +++++ E      +   + 
Sbjct  182  LFRRMPPAN----QRLNMLFSATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+ +  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEEIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + +  G     ++   D   T     ++L
Sbjct  367  NLPAIETYIGHSIPVSKYNPDALMTDLPKPLRL  399


 Score = 99.4 bits (246),  Expect = 8e-21, Method: Composition-based stats.
 Identities = 55/354 (16%), Positives = 120/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + +  G +
Sbjct  71   LLSHPAIAD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAQATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPANQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  ++   ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|P20447|DBP3_YEAST ATP-dependent RNA helicase DBP3 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP3 
PE=1 SV=2
Length=523

 Score = 301 bits (770),  Expect = 2e-92, Method: Composition-based stats.
 Identities = 108/421 (26%), Positives = 182/421 (43%), Gaps = 72/421 (17%)

Query  256  VALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDN  315
            V +++   G          + +   +      + L++ P+RELA Q  +N+       D 
Sbjct  153  VGVAETGSGKTFAFGVPAISHLMNDQ-KKRGIQVLVISPTRELASQIYDNLIVL---TDK  208

Query  316  PKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGL  375
              ++   + GGV   +Q   L+    +VV TPGRL DL+  G ++LSQV +LVLDEAD +
Sbjct  209  VGMQCCCVYGGVPKDEQRIQLKKS-QVVVATPGRLLDLLQEGSVDLSQVNYLVLDEADRM  267

Query  376  LSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED  435
            L +G+ + I  +  +     +D  + Q ++ +AT    +V++L+   M+ P  V +   D
Sbjct  268  LEKGFEEDIKNIIRE-----TDASKRQTLMFTATWPK-EVRELASTFMNNPIKVSIGNTD  321

Query  436  --SVPDTVHHVVVPVNP--KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
              +    +  +V  V+P  K  +L E L K H                            
Sbjct  322  QLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPK------------------------  357

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
                         K ++ +IF   K +   +E+     G         ++   +HGD   
Sbjct  358  -------------KNEKVLIFALYKKEAARVERNLKYNG---------YNVAAIHGDLSQ  395

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
             +R Q L  FK G    L+ TDVAARG+DI  V  VIN+T P   ++YVHRIGR GRA +
Sbjct  396  QQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQ  455

Query  612  MGLAISLVATEKEKVWYHVCSSRG-----------KGCYNTRLKEDGGCTIWYNEMQLLS  660
             G A +L   +++ +   + +              K   +T+ KE      ++ ++ L  
Sbjct  456  TGTAHTLFTEQEKHLAGGLVNVLNGANQPVPEDLIKFGTHTKKKEHSAYGSFFKDVDLTK  515

Query  661  E  661
            +
Sbjct  516  K  516


 Score = 91.7 bits (226),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 37/139 (27%), Positives = 56/139 (40%), Gaps = 19/139 (14%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F  + +   I   + +  +  PT IQA + P +L G DV+  AETGSGKT AF +P 
Sbjct  113  LLSFDYLSLDSSIQAEISK--FPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPA  170

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC---------  111
            I  +    K     K+G   +    S   +     YD            CC         
Sbjct  171  ISHLMNDQK-----KRGIQVL--VISPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKD  223

Query  112  -QSREVKEWHGCRATKGLM  129
             Q  ++K+     AT G +
Sbjct  224  EQRIQLKKSQVVVATPGRL  242


>sp|Q54QS3|DDX3_DICDI Probable ATP-dependent RNA helicase ddx3 
OS=Dictyostelium discoideum OX=44689 GN=ddx3 PE=3 SV=1
Length=712

 Score = 306 bits (784),  Expect = 2e-92, Method: Composition-based stats.
 Identities = 96/371 (26%), Positives = 158/371 (43%), Gaps = 57/371 (15%)

Query  263  DGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
             G ++                   P+AL++ P+RELA+Q  +   +F        +  ++
Sbjct  307  SGILLDGAPEAPPAYKPGVPRAACPRALVLAPTRELAQQIFDEANKFS---YGSPVSSVV  363

Query  323  IIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD  382
            I GG     Q++ L+ G DI+V T GRL DL+  G+++LS++++LVLDEAD +L  G+  
Sbjct  364  IYGGAEVFHQINELDRGCDILVATTGRLVDLLMRGRVSLSKIKYLVLDEADRMLDMGFEP  423

Query  383  FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH  442
             I ++ ++        +  Q ++ SAT     ++ L+   ++   ++ +    +  +   
Sbjct  424  QIRQIISEFD--MPGCRDRQTLMFSATFPKQ-IQNLAADFLYNYIFLKVGVVGTTQNITQ  480

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
             +   V                                            K  Y +  + 
Sbjct  481  RIEYVVEED-----------------------------------------KNSYLLDYLS  499

Query  503  EHKMD-QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
              K D   +IF  TK  CD L  +  Q+          F   C+HGD    ER+  L+ F
Sbjct  500  GLKSDGLCLIFVETKRSCDTLTYFLNQR---------NFPTTCIHGDLTQPERENALQSF  550

Query  562  KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT  621
            +     FL+ TD+A+RG+ I  V  VIN  LP +   YVHRIGR GRA + GLAIS    
Sbjct  551  RSFATPFLVATDIASRGLHIGNVNLVINFDLPTDIHIYVHRIGRTGRAGKKGLAISFFNE  610

Query  622  EKEKVWYHVCS  632
            + + V   +  
Sbjct  611  KNKPVGAELLK  621


 Score = 102 bits (254),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 51/112 (46%), Gaps = 6/112 (5%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F+++ +   +   ++   +  PT +Q  ++P+IL   D++  A+TGSGKT AF  P+
Sbjct  246  LNSFADVDLGDVLLGNIKHAKYTKPTPVQKSALPIILKNRDLMACAQTGSGKTAAFLFPI  305

Query  61   IQIVY-----ETLKDQQEG-KKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            I  +      E     + G  +         +   +     +D  + F+ GS
Sbjct  306  ISGILLDGAPEAPPAYKPGVPRAACPRALVLAPTRELAQQIFDEANKFSYGS  357


>sp|Q5RC67|DDX23_PONAB Probable ATP-dependent RNA helicase DDX23 
OS=Pongo abelii OX=9601 GN=DDX23 PE=2 SV=1
Length=820

 Score = 309 bits (791),  Expect = 2e-92, Method: Composition-based stats.
 Identities = 92/413 (22%), Positives = 164/413 (40%), Gaps = 79/413 (19%)

Query  251  PKDGFVALSKAPDGYIVKS------QHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLN  304
                 + +++   G             +   ++ + +     P A+I+ P+RELA+Q   
Sbjct  427  QNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEE  486

Query  305  NIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQV  364
               +F K +    +R + +IGG++  DQ   L  G +IV+ TPGRL D++    L  S+ 
Sbjct  487  ETIKFGKPLG---IRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVPSRC  543

Query  365  RFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG--------------------KRLQVI  404
             ++VLDEAD ++  G+   + ++   +P                          K  Q +
Sbjct  544  TYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTV  603

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + +AT+    V++L+   +  P  V +       + V   V  ++    R          
Sbjct  604  MFTATMPPA-VERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKR----------  652

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                                          +  +  +++      IIF   K  CD L +
Sbjct  653  ------------------------------KKLLAILEQGFDPPIIIFVNQKKGCDVLAK  682

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
               + G         ++   LHG +   +R+  L   K G    L+ TDVA RGIDI  V
Sbjct  683  SLEKMG---------YNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDV  733

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
              V+N  +    ++Y+HRIGR GRA + G+AI+ +  E   V+Y +  +  + 
Sbjct  734  SMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILES  786


 Score = 109 bits (271),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 0/104 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + ++ +  + P I + +++  +  PT IQ ++IP+ L   D++  AETGSGKT AF IP+
Sbjct  390  IRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPL  449

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            +  +    K  +  +  +       +   +      +    F  
Sbjct  450  LVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGK  493


>sp|Q89AF9|DEAD_BUCBP ATP-dependent RNA helicase DeaD OS=Buchnera 
aphidicola subsp. Baizongia pistaciae (strain Bp) OX=224915 
GN=deaD PE=3 SV=1
Length=602

 Score = 303 bits (776),  Expect = 2e-92, Method: Composition-based stats.
 Identities = 109/457 (24%), Positives = 179/457 (39%), Gaps = 72/457 (16%)

Query  226  ALFPACVLKNAELKFN--FGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFL  283
              F +  L +  +      G  +           L K  D   +    SG         L
Sbjct  6    MTFSSFGLNSCIITALNDIGYVQPSPIQAACIPYLIKGKDVLGMAQTGSGKTAAFALPLL  65

Query  284  PN------APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE  337
             N       P+ L++ P+RELA Q       F K +    +  L + GG     QL  L 
Sbjct  66   HNIKLDVRVPQILVLTPTRELAVQVAEAFSNFSKKL--IGVHVLALYGGQRYDLQLKSLR  123

Query  338  NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD  397
             G  I+VGTPGRL D +    L+LS +  LVLDEAD +L  G+ + +  +  +IP     
Sbjct  124  KGPQIIVGTPGRLLDHLKRRTLSLSNLHSLVLDEADEMLRMGFIEDVETIMTEIPD----  179

Query  398  GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWE  457
              R Q  + SAT+    ++++S + M  P  + ++   +    +      V  K      
Sbjct  180  --RHQTALFSATMPEA-IRRISRRFMKNPKEIRIQSNITTRPDIQQSYWMVYGK------  230

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
                                               K +  +R ++       IIF RTK 
Sbjct  231  -----------------------------------KTDALIRFLEAEDFSATIIFVRTKN  255

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
                + +   + G         ++   L+GD     R+Q LE+ K G +  LI TDVAAR
Sbjct  256  ATLEVSEVLERYG---------YNSAALNGDMNQSLREQTLEKLKDGRLDILIATDVAAR  306

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
            G+D+  + +VIN  +P + ++YVHRIGR GRA R G A+  V   + ++  ++  +    
Sbjct  307  GLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRKGKALLFVENRERRLLRNIERA----  362

Query  638  CYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVE  674
              N  + E       +   + L +  + +   +   +
Sbjct  363  -MNISISEVNLPKSDFLSKRRLEKFAQKVQIQLDSKD  398


 Score = 99.0 bits (245),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 52/107 (49%), Gaps = 9/107 (8%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             FS  G+   I  A+ ++ ++ P+ IQA  IP ++ G DVL  A+TGSGKT AF++P++ 
Sbjct  7    TFSSFGLNSCIITALNDIGYVQPSPIQAACIPYLIKGKDVLGMAQTGSGKTAAFALPLLH  66

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGL  109
             +   ++  Q             +   +  +   +  S F+    G+
Sbjct  67   NIKLDVRVPQ---------ILVLTPTRELAVQVAEAFSNFSKKLIGV  104


>sp|P47943|IF4A_SCHPO ATP-dependent RNA helicase eIF4A OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=tif1 
PE=1 SV=2
Length=392

 Score = 296 bits (758),  Expect = 2e-92, Method: Composition-based stats.
 Identities = 109/429 (25%), Positives = 184/429 (43%), Gaps = 75/429 (17%)

Query  227  LFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQ--------  276
             F    LK   L+  + +G E      +   + +    +  ++    SG  +        
Sbjct  20   TFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPI--LGERDVLAQAQSGTGKTATFSISV  77

Query  277  VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL  336
            + +        +ALI+ P+RELA+Q    +      ++   +     IGG   RD ++ L
Sbjct  78   LQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMN---VECHACIGGTLVRDDMAAL  134

Query  337  ENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTS  396
            + GV +VVGTPGR+ D++    L    V+  VLDEAD +LS+G+ D I  +   +P    
Sbjct  135  QAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTA-  193

Query  397  DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLW  456
                 QV++ SAT+   DV +++ K M  P  + +K ++   + +    V V  +  +L 
Sbjct  194  -----QVVLLSATMP-QDVLEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVEKEEWKL-  246

Query  457  ERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTK  516
                                                  +      +   + QA+IFC T+
Sbjct  247  --------------------------------------DTLCDLYETVTVTQAVIFCNTR  268

Query  517  IDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAA  576
               D L +   ++          F+   +HGD    +R   +  F+ G  R LI TD+ A
Sbjct  269  RKVDWLTEQLTER---------DFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLA  319

Query  577  RGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGK  636
            RGID+  V  VIN  LP  ++NY+HRIGR GR  R G++I+ V  +  ++   +     +
Sbjct  320  RGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREI-----E  374

Query  637  GCYNTRLKE  645
              YNT ++E
Sbjct  375  QFYNTHIEE  383


 Score = 100 bits (248),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 33/133 (25%), Positives = 51/133 (38%), Gaps = 2/133 (2%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F +M + PE+ + +    +  P+ IQ  +I  ILG  DVL  A++G+GKT  FSI V
Sbjct  18   IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV  77

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEW-  119
            +Q +  +LK  Q      T             +         A     L        +  
Sbjct  78   LQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAG  137

Query  120  -HGCRATKGLMKG  131
             H    T G +  
Sbjct  138  VHVVVGTPGRVHD  150


>sp|Q9LU46|RH35_ARATH DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis 
thaliana OX=3702 GN=RH35 PE=2 SV=1
Length=591

 Score = 303 bits (775),  Expect = 2e-92, Method: Composition-based stats.
 Identities = 116/511 (23%), Positives = 198/511 (39%), Gaps = 77/511 (15%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            KN KD+     +   +K + +     ++   L                 + ++    G  
Sbjct  146  KNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILA--------GRDMIGIAFTGSGKT  197

Query  267  VKSQHSGNAQVTQTKFLPN-----APKALIVEPSRELAEQTLNNIKQFKKYI---DNPKL  318
            +           Q + +        P  LIV PSRELA QT   ++QF   +     P L
Sbjct  198  LVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPL  257

Query  319  RELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQ  378
            R LL IGG+  R QL V++ GV IVV TPGRL D+++  K++L   R+L LDEAD L+  
Sbjct  258  RSLLCIGGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDL  317

Query  379  GYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVP  438
            G+ D I  + +          + Q ++ SAT+ +  ++  +   +  P  V++    +  
Sbjct  318  GFEDDIREVFDHF------KSQRQTLLFSATMPT-KIQIFARSALVKPVTVNVGRAGAAN  370

Query  439  DTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAV  498
              V   V  V  +                                         K  Y +
Sbjct  371  LDVIQEVEYVKQEA----------------------------------------KIVYLL  390

Query  499  RAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNL  558
              +++      +IFC  K D D++ +Y + +G            V +HG +   +R+  +
Sbjct  391  ECLQKTSP-PVLIFCENKADVDDIHEYLLLKG---------VEAVAIHGGKDQEDREYAI  440

Query  559  ERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
              FK G    L+ TDVA++G+D   + +VIN  +P E +NYVHRIGR GR  + G+A + 
Sbjct  441  SSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTF  500

Query  619  VATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCT----ISQVE  674
            +   + +          +                  E + ++       C     +    
Sbjct  501  INKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEEAETIANASGVKGCAYCGGLGHRI  560

Query  675  PDIKVPVDEFDGKVTYGQKRAAGGGSYKGHV  705
             D      +    ++  +K   G G Y+G +
Sbjct  561  RDCPKLEHQKSVAISNSRKDYFGSGGYRGEI  591


 Score = 96.4 bits (238),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 1/102 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F +M     +   ++E   + PT IQ + +P+IL G D++  A TGSGKT  F +P+
Sbjct  145  IKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPM  204

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            I I  +          G+  I        +     Y+    F
Sbjct  205  IMIALQEEM-MMPIAAGEGPIGLIVCPSRELARQTYEVVEQF  245


>sp|B7NTG2|RHLB_ECO7I ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O7:K1 (strain IAI39 / ExPEC) OX=585057 GN=rhlB PE=3 
SV=1
Length=421

 Score = 297 bits (761),  Expect = 2e-92, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 184/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +       ++   L                    ++   G  +   
Sbjct  13   DFALHPKVVEALEKKGFHNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQ----TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +           N P+ALI+ P+RELA Q   + +   +      L+  L  GG
Sbjct  65   TSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQ---ATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +++++ E      +   + 
Sbjct  182  LFRRMPPAN----QRLNMLFSATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+ +  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEEIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + +  G     ++   D   T     ++L
Sbjct  367  NLPAIETYIGHSIPVSKYNPDALMTDLPKPLRL  399


 Score = 99.4 bits (246),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 55/354 (16%), Positives = 120/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + +  G +
Sbjct  71   LLSHPAIAD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAQATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPANQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  ++   ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|B9XXL6|RHPA_HELP8 DEAD-box ATP-dependent RNA helicase RhpA 
OS=Helicobacter pylori (strain B128) OX=544406 GN=rhpA PE=1 
SV=1
Length=492

 Score = 300 bits (767),  Expect = 3e-92, Method: Composition-based stats.
 Identities = 104/484 (21%), Positives = 194/484 (40%), Gaps = 67/484 (14%)

Query  217  EIPPHMKNQALFPACVLKNAELKFNF--GEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN  274
            EI     ++  F    LK + LK  +  G        +    A+ +  D        +G 
Sbjct  11   EIDDDAYHKPSFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGK  70

Query  275  AQVTQTKFLPN-----APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAA  329
                    + N       +AL++ P+RELA Q  + I +  K+    + + + + GG + 
Sbjct  71   TAAFALPIINNLKNNHTIEALVITPTRELAMQISDEIFKLGKH---TRTKTVCVYGGQSV  127

Query  330  RDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHN  389
            + Q   ++    +++ TPGRL D +   +++    + +VLDE+D +L  G+ D I  + +
Sbjct  128  KKQCEFIKKNPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFD  187

Query  390  QIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN  449
             +P         Q+++ SAT+    +K+L++KI+  P  + +   +     +      +N
Sbjct  188  YLPSEA------QILLFSATMPEP-IKRLADKILENPIKIHIAPSNITNTDITQRFYVIN  240

Query  450  PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA  509
                                                       + E  +R +      ++
Sbjct  241  EHE----------------------------------------RAEAIMRLLDTQAPKKS  260

Query  510  IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL  569
            I+F RTK + D L Q+   +          +    LHGD    +R+ ++  FKK D   L
Sbjct  261  IVFTRTKKEADELHQFLASK---------NYKSTALHGDMDQRDRRASIMAFKKNDADVL  311

Query  570  ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            + TDVA+RG+DI GV +V N  LP   ++Y+HRIGR GRA + G+AI+LV   + K    
Sbjct  312  VATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLR  371

Query  630  VCSSRGKGCYNTRLKEDGGCTIWYNEMQL-LSEIEEHLNCTISQVEPDIKVPVDEFDGKV  688
            +            +       I        +SE    L   ++++    ++ +     + 
Sbjct  372  MQKEIDSEIELFEIPTINENQIIKTLHDAKVSEGIISLYEQLTEIFEPSQLVLKLLSLQF  431

Query  689  TYGQ  692
               +
Sbjct  432  ETSK  435


 Score = 109 bits (273),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 10/102 (10%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F+++G+   + ++V E  +  P+ IQ ++IP +L G DV+  A+TG+GKT AF++P+I 
Sbjct  21   SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN  80

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
             +          K   T      +   +  M   D       
Sbjct  81   NL----------KNNHTIEALVITPTRELAMQISDEIFKLGK  112


>sp|Q4P331|IF4A_USTMA ATP-dependent RNA helicase eIF4A OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=TIF1 PE=3 
SV=1
Length=411

 Score = 297 bits (760),  Expect = 3e-92, Method: Composition-based stats.
 Identities = 113/426 (27%), Positives = 185/426 (43%), Gaps = 71/426 (17%)

Query  228  FPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN------AQVTQ  279
            F    LK   L+  + +G E          V + K  D        +G       A + +
Sbjct  40   FDNMELKEELLRGVYAYGFERPSAIQARAIVPVIKGHDVIAQAQSGTGKTATFSIAILQR  99

Query  280  TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
                  A +ALI+ P+RELA+Q    +     Y+   K+     IGG   R+ ++ L  G
Sbjct  100  IDPSIKAVQALILAPTRELAQQIQKVVIALGDYM---KIDCHACIGGTNVREDMAKLNEG  156

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
              +VVGTPGR+ D+++       Q++   LDEAD +LS+G+ D +  +   +PQ T    
Sbjct  157  AQVVVGTPGRVYDMINRRAFKTDQLKMFCLDEADEMLSRGFKDQMYEVFQLLPQDT----  212

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              Q ++ SAT+   +V ++++K M  P  + +K ++   + +    V V  +  +L    
Sbjct  213  --QCVLLSATMP-QEVLEVTKKFMRDPIRILVKRDELTLEGIKQFYVAVEKEDWKL----  265

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
                                            L   Y    I      QA+IFC T+   
Sbjct  266  ------------------------------DTLCDLYETVTIT-----QAVIFCNTRRKV  290

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            D L                +F+   +HGD +  +R+  +  F+ G  R LI TD+ ARGI
Sbjct  291  DWLTDKLT---------SREFTVSAMHGDMEQAQREVIMREFRSGSSRVLITTDLLARGI  341

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCY  639
            D+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V ++  ++   +     +  Y
Sbjct  342  DVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTSDDVRMLRDI-----EQFY  396

Query  640  NTRLKE  645
            +T++ E
Sbjct  397  STQIDE  402


 Score = 93.3 bits (230),  Expect = 7e-19, Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 46/103 (45%), Gaps = 0/103 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F  M +  E+ + V    +  P+ IQA +I  ++ G DV+  A++G+GKT  FSI +
Sbjct  37   IDNFDNMELKEELLRGVYAYGFERPSAIQARAIVPVIKGHDVIAQAQSGTGKTATFSIAI  96

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
            +Q +  ++K  Q      T             +  Y +    A
Sbjct  97   LQRIDPSIKAVQALILAPTRELAQQIQKVVIALGDYMKIDCHA  139


>sp|Q3YVI4|RHLB_SHISS ATP-dependent RNA helicase RhlB OS=Shigella 
sonnei (strain Ss046) OX=300269 GN=rhlB PE=3 SV=1
Length=421

 Score = 297 bits (761),  Expect = 3e-92, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 184/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +       ++   L                    ++   G  +   
Sbjct  13   DFALHPKVVEALEKKGFHNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQ----TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +           N P+ALI+ P+RELA Q   + +      +   L+  L  GG
Sbjct  65   TSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLA---EATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +++++ E      +   + 
Sbjct  182  LFRRMPPAN----QRLNMLFSATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+ +  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEEIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + +  G     ++   D   T     ++L
Sbjct  367  NLPAIETYIGHSIPVSKYNPDALMTDLPKPLRL  399


 Score = 99.4 bits (246),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 56/354 (16%), Positives = 120/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + E  G +
Sbjct  71   LLSHPAIAD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAEATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPANQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  ++   ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|P0A8K0|RHLB_SHIFL ATP-dependent RNA helicase RhlB OS=Shigella 
flexneri OX=623 GN=rhlB PE=3 SV=2
Length=421

 Score = 297 bits (761),  Expect = 3e-92, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 184/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +       ++   L                    ++   G  +   
Sbjct  13   DFALHPKVVEALEKKGFHNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQ----TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +           N P+ALI+ P+RELA Q   + +      +   L+  L  GG
Sbjct  65   TSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLA---EATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +++++ E      +   + 
Sbjct  182  LFRRMPPAN----QRLNMLFSATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+ +  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEEIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + +  G     ++   D   T     ++L
Sbjct  367  NLPAIETYIGHSIPVSKYNPDALMTDLPKPLRL  399


 Score = 99.4 bits (246),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 56/354 (16%), Positives = 120/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + E  G +
Sbjct  71   LLSHPAIAD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAEATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPANQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  ++   ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|Q1R4F9|RHLB_ECOUT ATP-dependent RNA helicase RhlB OS=Escherichia 
coli (strain UTI89 / UPEC) OX=364106 GN=rhlB PE=3 SV=1
Length=421

 Score = 297 bits (761),  Expect = 3e-92, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 184/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +       ++   L                    ++   G  +   
Sbjct  13   DFALHPKVVEALEKKGFHNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQ----TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +           N P+ALI+ P+RELA Q   + +      +   L+  L  GG
Sbjct  65   TSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLA---EATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +++++ E      +   + 
Sbjct  182  LFRRMPPAN----QRLNMLFSATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+ +  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEEIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + +  G     ++   D   T     ++L
Sbjct  367  NLPAIETYIGHSIPVSKYNPDALMTDLPKPLRL  399


 Score = 99.4 bits (246),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 56/354 (16%), Positives = 120/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + E  G +
Sbjct  71   LLSHPAIAD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAEATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPANQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  ++   ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|B6I4B6|RHLB_ECOSE ATP-dependent RNA helicase RhlB OS=Escherichia 
coli (strain SE11) OX=409438 GN=rhlB PE=3 SV=1
Length=421

 Score = 297 bits (761),  Expect = 3e-92, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 184/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +       ++   L                    ++   G  +   
Sbjct  13   DFALHPKVVEALEKKGFHNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQ----TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +           N P+ALI+ P+RELA Q   + +      +   L+  L  GG
Sbjct  65   TSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLA---EATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +++++ E      +   + 
Sbjct  182  LFRRMPPAN----QRLNMLFSATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+ +  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEEIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + +  G     ++   D   T     ++L
Sbjct  367  NLPAIETYIGHSIPVSKYNPDALMTDLPKPLRL  399


 Score = 99.4 bits (246),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 56/354 (16%), Positives = 120/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + E  G +
Sbjct  71   LLSHPAIAD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAEATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPANQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  ++   ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|P0A8J8|RHLB_ECOLI ATP-dependent RNA helicase RhlB OS=Escherichia 
coli (strain K12) OX=83333 GN=rhlB PE=1 SV=2
Length=421

 Score = 297 bits (761),  Expect = 3e-92, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 184/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +       ++   L                    ++   G  +   
Sbjct  13   DFALHPKVVEALEKKGFHNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQ----TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +           N P+ALI+ P+RELA Q   + +      +   L+  L  GG
Sbjct  65   TSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLA---EATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +++++ E      +   + 
Sbjct  182  LFRRMPPAN----QRLNMLFSATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+ +  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEEIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + +  G     ++   D   T     ++L
Sbjct  367  NLPAIETYIGHSIPVSKYNPDALMTDLPKPLRL  399


 Score = 99.4 bits (246),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 56/354 (16%), Positives = 120/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + E  G +
Sbjct  71   LLSHPAIAD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAEATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPANQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  ++   ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|B1IWC0|RHLB_ECOLC ATP-dependent RNA helicase RhlB OS=Escherichia 
coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 
8545 / WDCM 00012 / Crooks) OX=481805 GN=rhlB PE=3 SV=1
Length=421

 Score = 297 bits (761),  Expect = 3e-92, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 184/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +       ++   L                    ++   G  +   
Sbjct  13   DFALHPKVVEALEKKGFHNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQ----TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +           N P+ALI+ P+RELA Q   + +      +   L+  L  GG
Sbjct  65   TSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLA---EATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +++++ E      +   + 
Sbjct  182  LFRRMPPAN----QRLNMLFSATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+ +  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEEIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + +  G     ++   D   T     ++L
Sbjct  367  NLPAIETYIGHSIPVSKYNPDALMTDLPKPLRL  399


 Score = 99.4 bits (246),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 56/354 (16%), Positives = 120/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + E  G +
Sbjct  71   LLSHPAIAD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAEATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPANQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  ++   ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|P0A8J9|RHLB_ECOL6 ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 
GN=rhlB PE=3 SV=2
Length=421

 Score = 297 bits (761),  Expect = 3e-92, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 184/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +       ++   L                    ++   G  +   
Sbjct  13   DFALHPKVVEALEKKGFHNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQ----TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +           N P+ALI+ P+RELA Q   + +      +   L+  L  GG
Sbjct  65   TSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLA---EATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +++++ E      +   + 
Sbjct  182  LFRRMPPAN----QRLNMLFSATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+ +  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEEIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + +  G     ++   D   T     ++L
Sbjct  367  NLPAIETYIGHSIPVSKYNPDALMTDLPKPLRL  399


 Score = 99.4 bits (246),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 56/354 (16%), Positives = 120/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + E  G +
Sbjct  71   LLSHPAIAD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAEATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPANQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  ++   ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|Q0TAU3|RHLB_ECOL5 ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O6:K15:H31 (strain 536 / UPEC) OX=362663 GN=rhlB 
PE=3 SV=1
Length=421

 Score = 297 bits (761),  Expect = 3e-92, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 184/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +       ++   L                    ++   G  +   
Sbjct  13   DFALHPKVVEALEKKGFHNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQ----TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +           N P+ALI+ P+RELA Q   + +      +   L+  L  GG
Sbjct  65   TSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLA---EATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +++++ E      +   + 
Sbjct  182  LFRRMPPAN----QRLNMLFSATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+ +  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEEIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + +  G     ++   D   T     ++L
Sbjct  367  NLPAIETYIGHSIPVSKYNPDALMTDLPKPLRL  399


 Score = 99.4 bits (246),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 56/354 (16%), Positives = 120/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + E  G +
Sbjct  71   LLSHPAIAD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAEATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPANQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  ++   ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|A1AHV0|RHLB_ECOK1 ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O1:K1 / APEC OX=405955 GN=rhlB PE=3 SV=1
Length=421

 Score = 297 bits (761),  Expect = 3e-92, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 184/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +       ++   L                    ++   G  +   
Sbjct  13   DFALHPKVVEALEKKGFHNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQ----TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +           N P+ALI+ P+RELA Q   + +      +   L+  L  GG
Sbjct  65   TSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLA---EATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +++++ E      +   + 
Sbjct  182  LFRRMPPAN----QRLNMLFSATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+ +  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEEIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + +  G     ++   D   T     ++L
Sbjct  367  NLPAIETYIGHSIPVSKYNPDALMTDLPKPLRL  399


 Score = 99.4 bits (246),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 56/354 (16%), Positives = 120/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + E  G +
Sbjct  71   LLSHPAIAD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAEATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPANQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  ++   ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|A8A6N4|RHLB_ECOHS ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O9:H4 (strain HS) OX=331112 GN=rhlB PE=3 SV=1
Length=421

 Score = 297 bits (761),  Expect = 3e-92, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 184/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +       ++   L                    ++   G  +   
Sbjct  13   DFALHPKVVEALEKKGFHNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQ----TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +           N P+ALI+ P+RELA Q   + +      +   L+  L  GG
Sbjct  65   TSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLA---EATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +++++ E      +   + 
Sbjct  182  LFRRMPPAN----QRLNMLFSATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+ +  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEEIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + +  G     ++   D   T     ++L
Sbjct  367  NLPAIETYIGHSIPVSKYNPDALMTDLPKPLRL  399


 Score = 99.4 bits (246),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 56/354 (16%), Positives = 120/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + E  G +
Sbjct  71   LLSHPAIAD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAEATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPANQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  ++   ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|B1X9Z4|RHLB_ECODH ATP-dependent RNA helicase RhlB OS=Escherichia 
coli (strain K12 / DH10B) OX=316385 GN=rhlB PE=3 SV=1
Length=421

 Score = 297 bits (761),  Expect = 3e-92, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 184/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +       ++   L                    ++   G  +   
Sbjct  13   DFALHPKVVEALEKKGFHNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQ----TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +           N P+ALI+ P+RELA Q   + +      +   L+  L  GG
Sbjct  65   TSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLA---EATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +++++ E      +   + 
Sbjct  182  LFRRMPPAN----QRLNMLFSATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+ +  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEEIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + +  G     ++   D   T     ++L
Sbjct  367  NLPAIETYIGHSIPVSKYNPDALMTDLPKPLRL  399


 Score = 99.4 bits (246),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 56/354 (16%), Positives = 120/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + E  G +
Sbjct  71   LLSHPAIAD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAEATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPANQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  ++   ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|C4ZZ48|RHLB_ECOBW ATP-dependent RNA helicase RhlB OS=Escherichia 
coli (strain K12 / MC4100 / BW2952) OX=595496 GN=rhlB 
PE=3 SV=1
Length=421

 Score = 297 bits (761),  Expect = 3e-92, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 184/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +       ++   L                    ++   G  +   
Sbjct  13   DFALHPKVVEALEKKGFHNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQ----TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +           N P+ALI+ P+RELA Q   + +      +   L+  L  GG
Sbjct  65   TSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLA---EATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +++++ E      +   + 
Sbjct  182  LFRRMPPAN----QRLNMLFSATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+ +  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEEIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + +  G     ++   D   T     ++L
Sbjct  367  NLPAIETYIGHSIPVSKYNPDALMTDLPKPLRL  399


 Score = 99.4 bits (246),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 56/354 (16%), Positives = 120/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + E  G +
Sbjct  71   LLSHPAIAD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAEATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPANQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  ++   ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|B7M5C7|RHLB_ECO8A ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O8 (strain IAI1) OX=585034 GN=rhlB PE=3 SV=1
Length=421

 Score = 297 bits (761),  Expect = 3e-92, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 184/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +       ++   L                    ++   G  +   
Sbjct  13   DFALHPKVVEALEKKGFHNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQ----TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +           N P+ALI+ P+RELA Q   + +      +   L+  L  GG
Sbjct  65   TSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLA---EATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +++++ E      +   + 
Sbjct  182  LFRRMPPAN----QRLNMLFSATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+ +  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEEIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + +  G     ++   D   T     ++L
Sbjct  367  NLPAIETYIGHSIPVSKYNPDALMTDLPKPLRL  399


 Score = 99.4 bits (246),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 56/354 (16%), Positives = 120/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + E  G +
Sbjct  71   LLSHPAIAD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAEATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPANQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  ++   ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|B7MR01|RHLB_ECO81 ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O81 (strain ED1a) OX=585397 GN=rhlB PE=3 SV=1
Length=421

 Score = 297 bits (761),  Expect = 3e-92, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 184/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +       ++   L                    ++   G  +   
Sbjct  13   DFALHPKVVEALEKKGFHNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQ----TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +           N P+ALI+ P+RELA Q   + +      +   L+  L  GG
Sbjct  65   TSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLA---EATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +++++ E      +   + 
Sbjct  182  LFRRMPPAN----QRLNMLFSATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+ +  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEEIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + +  G     ++   D   T     ++L
Sbjct  367  NLPAIETYIGHSIPVSKYNPDALMTDLPKPLRL  399


 Score = 99.4 bits (246),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 56/354 (16%), Positives = 120/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + E  G +
Sbjct  71   LLSHPAIAD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAEATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPANQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  ++   ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|B7L8B6|RHLB_ECO55 ATP-dependent RNA helicase RhlB OS=Escherichia 
coli (strain 55989 / EAEC) OX=585055 GN=rhlB PE=3 SV=1
Length=421

 Score = 297 bits (761),  Expect = 3e-92, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 184/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +       ++   L                    ++   G  +   
Sbjct  13   DFALHPKVVEALEKKGFHNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQ----TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +           N P+ALI+ P+RELA Q   + +      +   L+  L  GG
Sbjct  65   TSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLA---EATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +++++ E      +   + 
Sbjct  182  LFRRMPPAN----QRLNMLFSATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+ +  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEEIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + +  G     ++   D   T     ++L
Sbjct  367  NLPAIETYIGHSIPVSKYNPDALMTDLPKPLRL  399


 Score = 99.4 bits (246),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 56/354 (16%), Positives = 120/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + E  G +
Sbjct  71   LLSHPAIAD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAEATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPANQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  ++   ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|B7MGJ1|RHLB_ECO45 ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O45:K1 (strain S88 / ExPEC) OX=585035 GN=rhlB PE=3 
SV=1
Length=421

 Score = 297 bits (761),  Expect = 3e-92, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 184/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +       ++   L                    ++   G  +   
Sbjct  13   DFALHPKVVEALEKKGFHNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQ----TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +           N P+ALI+ P+RELA Q   + +      +   L+  L  GG
Sbjct  65   TSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLA---EATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +++++ E      +   + 
Sbjct  182  LFRRMPPAN----QRLNMLFSATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+ +  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEEIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + +  G     ++   D   T     ++L
Sbjct  367  NLPAIETYIGHSIPVSKYNPDALMTDLPKPLRL  399


 Score = 99.4 bits (246),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 56/354 (16%), Positives = 120/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + E  G +
Sbjct  71   LLSHPAIAD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAEATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPANQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  ++   ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|B7UMN5|RHLB_ECO27 ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O127:H6 (strain E2348/69 / EPEC) OX=574521 GN=rhlB 
PE=3 SV=1
Length=421

 Score = 297 bits (761),  Expect = 3e-92, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 184/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +       ++   L                    ++   G  +   
Sbjct  13   DFALHPKVVEALEKKGFHNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQ----TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +           N P+ALI+ P+RELA Q   + +      +   L+  L  GG
Sbjct  65   TSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLA---EATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +++++ E      +   + 
Sbjct  182  LFRRMPPAN----QRLNMLFSATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+ +  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEEIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + +  G     ++   D   T     ++L
Sbjct  367  NLPAIETYIGHSIPVSKYNPDALMTDLPKPLRL  399


 Score = 99.4 bits (246),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 56/354 (16%), Positives = 120/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + E  G +
Sbjct  71   LLSHPAIAD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAEATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPANQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  ++   ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|A7ZTY2|RHLB_ECO24 ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O139:H28 (strain E24377A / ETEC) OX=331111 GN=rhlB 
PE=3 SV=1
Length=421

 Score = 297 bits (761),  Expect = 3e-92, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 184/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +       ++   L                    ++   G  +   
Sbjct  13   DFALHPKVVEALEKKGFHNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQ----TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +           N P+ALI+ P+RELA Q   + +      +   L+  L  GG
Sbjct  65   TSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLA---EATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +++++ E      +   + 
Sbjct  182  LFRRMPPAN----QRLNMLFSATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+ +  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEEIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + +  G     ++   D   T     ++L
Sbjct  367  NLPAIETYIGHSIPVSKYNPDALMTDLPKPLRL  399


 Score = 99.4 bits (246),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 56/354 (16%), Positives = 120/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + E  G +
Sbjct  71   LLSHPAIAD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAEATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPANQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  ++   ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|B7NF85|RHLB_ECOLU ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O17:K52:H18 (strain UMN026 / ExPEC) OX=585056 GN=rhlB 
PE=3 SV=1
Length=421

 Score = 297 bits (760),  Expect = 3e-92, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 184/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +       ++   L                    ++   G  +   
Sbjct  13   DFALHPKVVEALEKKGFHNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQ----TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +           N P+ALI+ P+RELA Q   + +      +   L+  L  GG
Sbjct  65   TSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLA---EATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +++++ E      +   + 
Sbjct  182  LFRRMPPAN----QRLNMLFSATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+ +  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEEIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + +  G     ++   D   T     ++L
Sbjct  367  NLPAIETYIGHSIPVSKYNPDALMTDLPKPLRL  399


 Score = 99.0 bits (245),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 56/354 (16%), Positives = 120/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + E  G +
Sbjct  71   LLSHPAIAD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAEATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPANQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  ++   ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|B1LLV3|RHLB_ECOSM ATP-dependent RNA helicase RhlB OS=Escherichia 
coli (strain SMS-3-5 / SECEC) OX=439855 GN=rhlB PE=3 
SV=1
Length=421

 Score = 297 bits (760),  Expect = 3e-92, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 184/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +       ++   L                    ++   G  +   
Sbjct  13   DFALHPKVVEALEKKGFHNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQ----TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +           N P+ALI+ P+RELA Q   + +   +      L+  L  GG
Sbjct  65   TSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQ---ATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLCAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +++++ E      +   + 
Sbjct  182  LFRRMPPAN----QRLNMLFSATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+ +  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEEIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + +  G     ++   D   T     ++L
Sbjct  367  NLPAIETYIGHSIPVSKYNPDALMTDLPKPLRL  399


 Score = 100 bits (249),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 54/354 (15%), Positives = 121/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + +  G +
Sbjct  71   LLSHPAIAD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAQATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EEFTMHDTIGCYLD---IDKGHVKFSKNG-KDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++   +    C +    +D+    +     KD+   F  +PP  +   +  +  L     
Sbjct  150  KQ---NHINLCAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  ++   ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|A3Q9R3|RHLB_SHELP ATP-dependent RNA helicase RhlB OS=Shewanella 
loihica (strain ATCC BAA-1088 / PV-4) OX=323850 GN=rhlB 
PE=3 SV=1
Length=435

 Score = 297 bits (761),  Expect = 3e-92, Method: Composition-based stats.
 Identities = 110/451 (24%), Positives = 180/451 (40%), Gaps = 73/451 (16%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
              D  L  EI   +          ++   L      ++            ++   G  + 
Sbjct  11   FADFSLHPEIQQALVESGFEYCTPIQALSLPILLEHKD--------IAGQAQTGTGKTLA  62

Query  269  SQHSGNAQVTQTKFLP-----NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLI  323
                       T  +P     N P+A+++ P+RELA Q   + +   K+     L+  ++
Sbjct  63   FLV-ATFNHLLTTPIPDGRQLNQPRAIVMAPTRELAIQIAKDGELLAKHTG---LKVGIV  118

Query  324  IGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDF  383
             GG +   Q  VL+ GVDI++GT GR+ D V  G +NLS ++ +VLDEAD +   G+   
Sbjct  119  YGGESYEVQRKVLDKGVDILIGTTGRIIDYVRQGVINLSAIQAVVLDEADRMFDLGFIKD  178

Query  384  INRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-H  442
            I  +  ++P    D      ++ SATL S  V++L+   M+ P  V++   +     +  
Sbjct  179  IRFLFRRMP----DANERLNMLFSATL-SMKVQELAYDHMNDPEKVEIAPSEKTSKNITE  233

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
             +  P      RL                                          +  I+
Sbjct  234  EIFYPSMEDKMRL-----------------------------------------LLTLIE  252

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
            E   ++AI+F  TK  C+NL  +          +G       L GD    +R + LE+F 
Sbjct  253  EDWPEKAIVFSNTKHSCENLWAHL---------EGDGHRVGLLTGDVPQKKRIRILEQFT  303

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            KG++  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA + G+++S    E
Sbjct  304  KGELDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFACEE  363

Query  623  KEKVWYHVCSSRGKGCYNTRLKEDGGCTIWY  653
                   +          T    +       
Sbjct  364  YALNLPAIEHYIQHSIPVTNYDSEALLDDIP  394


 Score = 104 bits (258),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 64/354 (18%), Positives = 126/354 (36%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F++  + PEI QA+ E  +   T IQA S+P++L   D+   A+TG+GKT AF +     
Sbjct  11   FADFSLHPEIQQALVESGFEYCTPIQALSLPILLEHKDIAGQAQTGTGKTLAFLVATFNH  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +  T     +G++         +   +  +                  +  E+   H   
Sbjct  71   LLTTP--IPDGRQLNQPRAIVMAPTRELAIQI---------------AKDGELLAKHTGL  113

Query  124  ATKGLMKGKHYYEV--SCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDN  181
               G++ G   YEV     D+G+           + +GT                 +  +
Sbjct  114  KV-GIVYGGESYEVQRKVLDKGV----------DILIGTT---------------GRIID  147

Query  182  YGEEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFEIPP---HMKNQALFPACVLKNAE  237
            Y  +  ++ +    + +D+    F     KD+   F   P      N        +K  E
Sbjct  148  YVRQGVINLSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDANERLNMLFSATLSMKVQE  207

Query  238  LKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            L ++   +  +          SK     I         ++  T    + P KA++   ++
Sbjct  208  LAYDHMNDP-EKVEIAPSEKTSKNITEEIFYPSMEDKMRLLLTLIEEDWPEKAIVFSNTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                   ++ +    +++    R  L+ G V  + ++ +LE      +DI+V T
Sbjct  267  -------HSCENLWAHLEGDGHRVGLLTGDVPQKKRIRILEQFTKGELDILVAT  313


>sp|B5YY28|RHLB_ECO5E ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O157:H7 (strain EC4115 / EHEC) OX=444450 GN=rhlB 
PE=3 SV=1
Length=421

 Score = 297 bits (760),  Expect = 3e-92, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 184/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +       ++   L                    ++   G  +   
Sbjct  13   DFALHPKVVEALEKKGFHNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQ----TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +           N P+ALI+ P+RELA Q   + +      +   L+  L  GG
Sbjct  65   TSTFHCLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLA---EATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +++++ E      +   + 
Sbjct  182  LFRRMPPAN----QRLNMLFSATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+ +  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEEIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + +  G     ++   D   T     ++L
Sbjct  367  NLPAIETYIGHSIPVSKYNPDALMTDLPKPLRL  399


 Score = 98.3 bits (243),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 56/354 (16%), Positives = 120/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHC  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + E  G +
Sbjct  71   LLSHPAIAD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAEATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPANQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  ++   ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|Q31UK5|RHLB_SHIBS ATP-dependent RNA helicase RhlB OS=Shigella 
boydii serotype 4 (strain Sb227) OX=300268 GN=rhlB PE=3 
SV=1
Length=421

 Score = 297 bits (760),  Expect = 3e-92, Method: Composition-based stats.
 Identities = 110/407 (27%), Positives = 174/407 (43%), Gaps = 63/407 (15%)

Query  257  ALSKAPDGYIVKSQHSGNAQVTQ----TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKY  312
              ++   G  +    S    +           N P+ALI+ P+RELA Q   + +     
Sbjct  51   GQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLA--  108

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
             +   L+  L  GG     QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEA
Sbjct  109  -EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEA  167

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D +   G+   I  +  ++P       +   ++ SATL S+ V++L+ + M+   +++++
Sbjct  168  DRMYDLGFIKDIRWLFRRMPPAN----QRLNMLFSATL-SYRVRELAFEQMNNAEYIEVE  222

Query  433  GEDSVPDTVH-HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
             E      +   +  P N +  RL + L                                
Sbjct  223  PEQKTGHRIKEELFYPSNEEKMRLLQTL--------------------------------  250

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
                     I+E   D+AIIF  TK  C+ +  +    G              L GD   
Sbjct  251  ---------IEEEWPDRAIIFANTKHRCEEIWGHLAADG---------HRVGLLTGDVAQ  292

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
             +R + L+ F +GD+  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA  
Sbjct  293  KKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGA  352

Query  612  MGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
             G +ISL   E       + +  G     ++   D   T     ++L
Sbjct  353  SGHSISLACEEYALNLPAIETYIGHSIPVSKYNPDALMTDLPKPLRL  399


 Score = 97.5 bits (241),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 55/354 (16%), Positives = 119/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ + +E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPKVVEVLEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + E  G +
Sbjct  71   LLSHPAIAD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAEATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPANQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  ++   ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|B2TU12|RHLB_SHIB3 ATP-dependent RNA helicase RhlB OS=Shigella 
boydii serotype 18 (strain CDC 3083-94 / BS512) OX=344609 
GN=rhlB PE=3 SV=1
Length=421

 Score = 297 bits (760),  Expect = 3e-92, Method: Composition-based stats.
 Identities = 110/407 (27%), Positives = 174/407 (43%), Gaps = 63/407 (15%)

Query  257  ALSKAPDGYIVKSQHSGNAQVTQ----TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKY  312
              ++   G  +    S    +           N P+ALI+ P+RELA Q   + +     
Sbjct  51   GQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLA--  108

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
             +   L+  L  GG     QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEA
Sbjct  109  -EATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEA  167

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D +   G+   I  +  ++P       +   ++ SATL S+ V++L+ + M+   +++++
Sbjct  168  DRMYDLGFIKDIRWLFRRMPPAN----QRLNMLFSATL-SYRVRELAFEQMNNAEYIEVE  222

Query  433  GEDSVPDTVH-HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
             E      +   +  P N +  RL + L                                
Sbjct  223  PEQKTGHRIKEELFYPSNEEKMRLLQTL--------------------------------  250

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
                     I+E   D+AIIF  TK  C+ +  +    G              L GD   
Sbjct  251  ---------IEEEWPDRAIIFANTKHRCEEIWGHLAADG---------HRVGLLTGDVAQ  292

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
             +R + L+ F +GD+  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA  
Sbjct  293  KKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGA  352

Query  612  MGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
             G +ISL   E       + +  G     ++   D   T     ++L
Sbjct  353  SGHSISLACEEYALNLPAIETYIGHSIPVSKYNPDALMTDLPKPLRL  399


 Score = 97.5 bits (241),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 55/354 (16%), Positives = 119/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ + +E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPKVVEVLEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + E  G +
Sbjct  71   LLSHPAIAD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAEATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPANQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  ++   ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|A4WG30|RHLB_ENT38 ATP-dependent RNA helicase RhlB OS=Enterobacter 
sp. (strain 638) OX=399742 GN=rhlB PE=3 SV=1
Length=421

 Score = 297 bits (760),  Expect = 3e-92, Method: Composition-based stats.
 Identities = 115/453 (25%), Positives = 185/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++N+       ++   L                    ++   G  +   
Sbjct  13   DFALHAKVIEALENKGFHYCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQTKF----LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +           N P+ALI+ P+RELA Q   + +   +      L+  L  GG
Sbjct  65   TSAFHYLLSNPAMADRKVNQPRALIMAPTRELAVQIHADAEPLAQ---TTGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +V+++ E      +   + 
Sbjct  182  LFRRMPPTP----QRLNMLFSATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+++  +    G              L GD    +R + LE F +GD
Sbjct  256  PDRAIIFANTKHRCEDIWGHLAADG---------HRVGLLTGDVAQKKRLRILEDFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + +  G     ++   D   +      +L
Sbjct  367  NLTAIETYIGHSVPQSKYNPDALLSELPPPKRL  399


 Score = 94.8 bits (234),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 57/355 (16%), Positives = 118/355 (33%), Gaps = 64/355 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  +  ++ +A+E   +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHAKVIEALENKGFHYCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSAFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + +  G +
Sbjct  71   LLSNPA--MADRKVNQPRALIMAPTRELAVQIH--------------ADAEPLAQTTGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAFEIPPHMKNQ--ALFPACVLKNAE  237
            ++    +       LD       + F K+ + L   F   P    +   LF A  L    
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPTPQRLNMLFSAT-LSYRV  205

Query  238  LKFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPS  295
             +  F +    ++   +            +    +    ++ QT      P +A+I   +
Sbjct  206  RELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANT  265

Query  296  RELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
            +       +  +    ++     R  L+ G VA + +L +LE+     +DI+V T
Sbjct  266  K-------HRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTRGDLDILVAT  313


>sp|A6ZUA1|DBP3_YEAS7 ATP-dependent RNA helicase DBP3 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DBP3 PE=3 SV=1
Length=523

 Score = 300 bits (768),  Expect = 3e-92, Method: Composition-based stats.
 Identities = 108/421 (26%), Positives = 182/421 (43%), Gaps = 72/421 (17%)

Query  256  VALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDN  315
            V +++   G          + +   +      + L++ P+RELA Q  +N+       D 
Sbjct  153  VGVAETGSGKTFAFGVPAISHLMNDQ-KKRGIQVLVISPTRELASQIYDNLIVL---TDK  208

Query  316  PKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGL  375
              ++   + GGV   +Q   L+    +VV TPGRL DL+  G ++LSQV +LVLDEAD +
Sbjct  209  VGMQCCCVYGGVPKDEQRIQLKKS-QVVVATPGRLLDLLQEGSVDLSQVNYLVLDEADRM  267

Query  376  LSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED  435
            L +G+ + I  +  +     +D  + Q ++ +AT    +V++L+   M+ P  V +   D
Sbjct  268  LEKGFEEDIKNIIRE-----TDASKRQTLMFTATWPK-EVRELASTFMNNPIKVSIGNTD  321

Query  436  --SVPDTVHHVVVPVNP--KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
              +    +  +V  V+P  K  +L E L K H                            
Sbjct  322  QLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPK------------------------  357

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
                         K ++ +IF   K +   +E+     G         ++   +HGD   
Sbjct  358  -------------KNEKVLIFALYKKEAARVERNLKYNG---------YNIAAIHGDLSQ  395

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
             +R Q L  FK G    L+ TDVAARG+DI  V  VIN+T P   ++YVHRIGR GRA +
Sbjct  396  QQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQ  455

Query  612  MGLAISLVATEKEKVWYHVCSSRG-----------KGCYNTRLKEDGGCTIWYNEMQLLS  660
             G A +L   +++ +   + +              K   +T+ KE      ++ ++ L  
Sbjct  456  TGTAHTLFTEQEKHLAGGLVNVLNGANQPVPEDLIKFGTHTKKKEHSAYGSFFKDVDLTK  515

Query  661  E  661
            +
Sbjct  516  K  516


 Score = 91.7 bits (226),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 37/139 (27%), Positives = 56/139 (40%), Gaps = 19/139 (14%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F  + +   I   + +  +  PT IQA + P +L G DV+  AETGSGKT AF +P 
Sbjct  113  LLSFDYLSLDSSIQAEISK--FPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPA  170

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC---------  111
            I  +    K     K+G   +    S   +     YD            CC         
Sbjct  171  ISHLMNDQK-----KRGIQVL--VISPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKD  223

Query  112  -QSREVKEWHGCRATKGLM  129
             Q  ++K+     AT G +
Sbjct  224  EQRIQLKKSQVVVATPGRL  242


>sp|Q5BFU7|DBP10_EMENI ATP-dependent RNA helicase dbp10 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / 
NRRL 194 / M139) OX=227321 GN=dbp10 PE=3 SV=1
Length=936

 Score = 311 bits (796),  Expect = 4e-92, Method: Composition-based stats.
 Identities = 115/487 (24%), Positives = 190/487 (39%), Gaps = 33/487 (7%)

Query  224  NQALFPACVLKNAELKFNFGEEEFKFPPKDG-FVALSKAPDGYIVKSQHSGNAQVTQTKF  282
            N  L  A   K   +      +      +D   V +++   G           ++ ++  
Sbjct  99   NANLLKAIARKGFSVPTPIQRKTIPVIMEDQDVVGMARTGSGKTAAFVIPMIEKL-KSHS  157

Query  283  LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDI  342
                 + LI+ PSRELA QTL  +K+  K      L+ +L++GG +  +Q  ++    DI
Sbjct  158  TKFGARGLILSPSRELALQTLKVVKELGK---GTDLKSVLLVGGDSLEEQFGMMAGNPDI  214

Query  343  VVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            V+ TPGR   L     L+LS ++++V DEAD L   G++  +  + + +P         Q
Sbjct  215  VIATPGRFLHLKVEMNLDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPST------RQ  268

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNP--KTDRLWERLG  460
             ++ SATL    V+  +   +  PT V L  E  +   + +    V    K   L   L 
Sbjct  269  TLLFSATLPKSLVE-FARAGLQDPTLVRLDTESKISPDLQNAFFSVKSAEKEGALLYILN  327

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
            +                     +  ++  K  + E AV   +       I+F  TK   D
Sbjct  328  EVIKMPTGPTEASLRLKEKGPEDSKNKKRKRAEMERAVNMKESPTKHSTIVFAATKHHVD  387

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             L     + G         F+   ++G      RK  ++ F+ G    L+ TDVAARGID
Sbjct  388  YLYSLLREAG---------FAVSYVYGSLDQTARKIQVQNFRTGISNILVVTDVAARGID  438

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYN  640
            I  +  VIN   P + + +VHR+GR  RA R G + SLV          +    G+    
Sbjct  439  IPILANVINYDFPSQPKIFVHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLFLGRKLVL  498

Query  641  TRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEF-------DGKVTYGQK  693
             R   +     +  ++ + S   + L+ T   V   +    D F        G+  Y + 
Sbjct  499  GR---ESDQVNFAEDVAVGSLPRDGLSQTCEWVSRVLDDDADIFAQRAVSTKGEKLYLRT  555

Query  694  RAAGGGS  700
            R A    
Sbjct  556  RNAASAE  562


 Score = 100 bits (248),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 65/364 (18%), Positives = 123/364 (34%), Gaps = 47/364 (13%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F  MG+   + +A+    + +PT IQ ++IP+I+   DV+  A TGSGKT AF IP+I+ 
Sbjct  93   FQAMGLNANLLKAIARKGFSVPTPIQRKTIPVIMEDQDVVGMARTGSGKTAAFVIPMIEK  152

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +       + G +G        S   +  +           G+D    +S  +       
Sbjct  153  LKSH--STKFGARG-----LILSPSRELALQTLKVVKELGKGTD---LKSVLLVGGDSLE  202

Query  124  ATKGLMKGKHYYEVSCHDQG-------LCRVGWSTMQA-SLDLGTDKFGFGFGGTGKKSH  175
               G+M G    ++     G          +  S+++    D     F  GF     +  
Sbjct  203  EQFGMMAGNP--DIVIATPGRFLHLKVEMNLDLSSIKYVVFDEADRLFEMGFAAQLTEIL  260

Query  176  NKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKD------LGLAFEIPPHMKNQALFP  229
            +              T+     + K  V+F++ G        L    +I P ++N     
Sbjct  261  HGLPS-------TRQTLLFSATLPKSLVEFARAGLQDPTLVRLDTESKISPDLQNAFFSV  313

Query  230  ACVLKNAELKFNFGE--EEFKFPPKDGFVALSKAPDGYIVKSQHSGN-AQVTQTKFLPNA  286
                K   L +   E  +    P +       K P+    K +      +    K  P  
Sbjct  314  KSAEKEGALLYILNEVIKMPTGPTEASLRLKEKGPEDSKNKKRKRAEMERAVNMKESPTK  373

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG---VAARDQLSVLENGV-DI  342
               ++   ++       +++      +         + G     A + Q+     G+ +I
Sbjct  374  HSTIVFAATK-------HHVDYLYSLLREAGFAVSYVYGSLDQTARKIQVQNFRTGISNI  426

Query  343  VVGT  346
            +V T
Sbjct  427  LVVT  430


>sp|B5FF87|RHLB_ALIFM ATP-dependent RNA helicase RhlB OS=Aliivibrio 
fischeri (strain MJ11) OX=388396 GN=rhlB PE=3 SV=1
Length=432

 Score = 297 bits (760),  Expect = 4e-92, Method: Composition-based stats.
 Identities = 119/491 (24%), Positives = 195/491 (40%), Gaps = 79/491 (16%)

Query  208  NGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGF---VALSKAPDG  264
            N  DLGL  ++   +  +       ++   L      ++     + G    +A   A   
Sbjct  10   NFADLGLQPQVIDGLNAKGFIKCTPIQAKALPVLLAGQDIAGQAQTGTGKTLAFLTATFN  69

Query  265  YIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
            +++ +      ++TQ       P+A+I+ P+RELA Q  N+ +     I +  L+  L  
Sbjct  70   HLLTTPAPEGRKITQ-------PRAIIMAPTRELAIQIFNDAESL---IASTGLKAALAY  119

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG     Q  V+E GVDI++GT GR+ D    G ++   ++ +VLDEAD +   G+   I
Sbjct  120  GGERYEKQQQVIEQGVDILIGTTGRIIDFYKQGHIDFKMIQAVVLDEADRMFDLGFIKDI  179

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-H  443
              +  ++P  T        ++ SATL S+ V++L+ + M  P  V ++ E      +   
Sbjct  180  RFIFRRMPAPT----ERLNMLFSATL-SYRVQELAFEHMQEPEHVVVEPEQKTGHRIKEE  234

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
            +  P N     L + L                                         I+E
Sbjct  235  LFYPSNDHKMALLQTL-----------------------------------------IEE  253

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
               D+AIIF  TK  C+++  +             +     L GD    +R++ LE F +
Sbjct  254  EWPDRAIIFANTKHKCESVWGHL---------AADKHRVGLLTGDVPQKKRERILEEFTQ  304

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
            G+V  L+ TDVAARG+ I  V +V N  LP+E ++YVHRIGR GRA   G +IS    E 
Sbjct  305  GNVDILVATDVAARGLHIPQVTHVFNFDLPNEAEDYVHRIGRTGRAGASGNSISFACEEY  364

Query  624  EKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDE  683
                  +              E       Y+   LL ++   L       +         
Sbjct  365  AINLPAIEE----------YIEHSIPQSDYDASALLEDLPAPLRLQRRPQQNRRNNNGQR  414

Query  684  FDGKVTYGQKR  694
              G   + + R
Sbjct  415  QGGNRKHSRPR  425


 Score = 108 bits (270),  Expect = 7e-24, Method: Composition-based stats.
 Identities = 57/351 (16%), Positives = 119/351 (34%), Gaps = 56/351 (16%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+++G+ P++   +    ++  T IQA+++P++L G D+   A+TG+GKT AF       
Sbjct  11   FADLGLQPQVIDGLNAKGFIKCTPIQAKALPVLLAGQDIAGQAQTGTGKTLAFLTATFNH  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +  T     EG+K         +   +  +  ++               +  +    G +
Sbjct  71   LLTTPAP--EGRKITQPRAIIMAPTRELAIQIFN--------------DAESLIASTGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
            A       ++  +    +QG+           + +GT        G     + +   ++ 
Sbjct  115  AALAYGGERYEKQQQVIEQGV----------DILIGTT-------GRIIDFYKQGHIDF-  156

Query  184  EEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFE---IPPHMKNQALFPACVLKNAELK  239
            +           + +D+    F     KD+   F     P    N         +  EL 
Sbjct  157  KMIQA-------VVLDEADRMFDLGFIKDIRFIFRRMPAPTERLNMLFSATLSYRVQELA  209

Query  240  FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELA  299
            F   +E      +       +  +     S     A +          +A+I   ++   
Sbjct  210  FEHMQEPEHVVVEPEQKTGHRIKEELFYPSNDHKMALLQTLIEEEWPDRAIIFANTK---  266

Query  300  EQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                +  +    ++   K R  L+ G V  + +  +LE      VDI+V T
Sbjct  267  ----HKCESVWGHLAADKHRVGLLTGDVPQKKRERILEEFTQGNVDILVAT  313


>sp|Q2UPY3|IF4A_ASPOR ATP-dependent RNA helicase eIF4A OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=tif1 
PE=3 SV=1
Length=421

 Score = 297 bits (759),  Expect = 4e-92, Method: Composition-based stats.
 Identities = 111/426 (26%), Positives = 186/426 (44%), Gaps = 71/426 (17%)

Query  228  FPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN------AQVTQ  279
            F A  LK   L+  + +G E      +     + K  D        +G       + + +
Sbjct  50   FDAMELKPELLRGVYAYGFERPSAIQQRAIKPIIKGSDVIAQAQSGTGKTATFSISALQK  109

Query  280  TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
                    +ALI+ P+RELA+Q    +     +++   +     IGG A R+ +  L  G
Sbjct  110  LDPNVKGCQALILAPTRELAQQIQKVVVAIGDFMN---ITCHACIGGTAVREDMKALGEG  166

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
             ++VVGTPGR+ D++    L    ++  +LDEAD +LS+G+++ I  +   +PQ T    
Sbjct  167  PEVVVGTPGRVHDMIQRRVLKTDHLKQFILDEADEMLSRGFTEQIYDIFQLLPQST----  222

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              QV++ SAT+   DV +++ K M  P  + +K ++   + +    + V  +  +L    
Sbjct  223  --QVVLLSATMP-QDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKL----  275

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
                                            L   Y    I      QA+IFC T+   
Sbjct  276  ------------------------------DTLSDLYETVTIT-----QAVIFCNTRRKV  300

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            D L                 F+   +HGD +  +R   ++ F+ G  R LI TD+ ARGI
Sbjct  301  DWLTDKLT---------ARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIATDLLARGI  351

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCY  639
            D+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V  +  ++   +     +  Y
Sbjct  352  DVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREI-----EQFY  406

Query  640  NTRLKE  645
            +T+++E
Sbjct  407  STQIEE  412


 Score = 89.8 bits (221),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 44/108 (41%), Gaps = 9/108 (8%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F  M + PE+ + V    +  P+ IQ  +I  I+ G DV+  A++G+GKT  FSI  +Q
Sbjct  49   SFDAMELKPELLRGVYAYGFERPSAIQQRAIKPIIKGSDVIAQAQSGTGKTATFSISALQ  108

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLC  110
             +   +K  Q             +   +          A     +  C
Sbjct  109  KLDPNVKGCQ---------ALILAPTRELAQQIQKVVVAIGDFMNITC  147


>sp|Q9P7C7|PRP11_SCHPO Pre-mRNA-processing ATP-dependent RNA helicase 
prp11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 
24843) OX=284812 GN=prp11 PE=1 SV=1
Length=1014

 Score = 312 bits (800),  Expect = 4e-92, Method: Composition-based stats.
 Identities = 109/501 (22%), Positives = 191/501 (38%), Gaps = 78/501 (16%)

Query  231  CVLKNAELKF--NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN---  285
            C L    +    + G E+          A++   D   V    SG           +   
Sbjct  423  CGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKD  482

Query  286  --------APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE  337
                     P A+I+ P+RELA Q     K F K ++   +R     GG   +DQ++ L+
Sbjct  483  QRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLN---IRACCAYGGAPIKDQIADLK  539

Query  338  NGVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV  394
             G +IVV TPGR+ D++S       NL +  +LVLDEAD +   G+   + R+ N I   
Sbjct  540  RGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNI---  596

Query  395  TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVV--PVNPKT  452
                   Q ++ SAT     ++ L+ K++  P  + + G   V   V  +V   P   K 
Sbjct  597  ---RPDRQTVLFSATFPRA-MEALARKVLKKPVEITVGGRSVVASEVEQIVEVRPEESKF  652

Query  453  DRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF  512
             RL E LG+ +    DV                                      + ++F
Sbjct  653  SRLLELLGELYNNQLDV--------------------------------------RTLVF  674

Query  513  CRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICT  572
               +   D L    +++G         ++   +HG +  H+R   +  +K G    LI T
Sbjct  675  VDRQESADALLSDLMKRG---------YTSNSIHGGKDQHDRDSTISDYKAGVFDVLIAT  725

Query  573  DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
             V ARG+D+  +  V+N   P+  ++YVHR+GR GRA   G+A++ +  E+EK    +  
Sbjct  726  SVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYAVDIAK  785

Query  633  SRGKGCYNTRLKEDGGCTIWYNEMQLLSE---IEEHLNCTISQVEPDIKVPVDEFDGKVT  689
            +          +     + +  +++   E           +S+++               
Sbjct  786  ALKMSKQPVPKELQTLASQFLEKVKAGKEKAAGGGFGGKGLSRLDETRNAERKMQRKAYG  845

Query  690  YGQKRAAGGGSYKGHVDILAP  710
              ++        K  ++ + P
Sbjct  846  EDEEDVETEAEAKSPLEKITP  866


 Score = 115 bits (287),  Expect = 6e-25, Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 4/96 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + ++S+ G+  +    +  + +  PT IQA++IP I  G DV+  A+TGSGKT AF +P+
Sbjct  417  VTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPM  476

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
             + +    KDQ+  K G+  I    +   +  +  +
Sbjct  477  FRHI----KDQRPLKTGEGPIAIIMTPTRELAVQIF  508


>sp|Q9LUW6|RH9_ARATH DEAD-box ATP-dependent RNA helicase 9, mitochondrial 
OS=Arabidopsis thaliana OX=3702 GN=RH9 PE=1 SV=1
Length=610

 Score = 303 bits (775),  Expect = 4e-92, Method: Composition-based stats.
 Identities = 107/434 (25%), Positives = 185/434 (43%), Gaps = 70/434 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            DLG++ EI   +K + +     ++ A L+                +  ++   G  +   
Sbjct  120  DLGISPEIVKALKGRGIEKLFPIQKAVLE--------PAMEGRDMIGRARTGTGKTLAFG  171

Query  271  HSGNAQVTQTKFLPNA---PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
                 ++ +          P+ L++ P+RELA Q     ++       P L  + + GG 
Sbjct  172  IPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEKEFRE-----SAPSLDTICLYGGT  226

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM  387
                Q+  L  G+D+ VGTPGR+ DL+  G LNLS+V+F+VLDEAD +L  G+++ +  +
Sbjct  227  PIGQQMRELNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEII  286

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
              ++P       + Q ++ SAT+ S+ ++ L++K ++ P  +DL G+             
Sbjct  287  LQKLPA------KRQSMMFSATMPSW-IRSLTKKYLNNPLTIDLVGDS------------  327

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
                  +L + +    I  D         P                        +  K  
Sbjct  328  ----DQKLADGITMYSIAADSYGRASIIGPLVK---------------------EHGKGG  362

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
            + I+F +TK D D L                 + C  LHGD    +R++ L  F+ G+  
Sbjct  363  KCIVFTQTKRDADRLAFGL----------AKSYKCEALHGDISQAQRERTLAGFRDGNFS  412

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             L+ TDVAARG+D+  V  VI+  LP+  + +VHR GR GRA + G AI +   ++ +  
Sbjct  413  ILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAV  472

Query  628  YHVCSSRGKGCYNT  641
              +    G      
Sbjct  473  KMIEKEVGSRFNEL  486


 Score = 92.9 bits (229),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 29/139 (21%), Positives = 52/139 (37%), Gaps = 10/139 (7%)

Query  5    SEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIV  64
            +++G+ PEI +A++         IQ   +   + G D++  A TG+GKT AF IP+I  +
Sbjct  119  ADLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKI  178

Query  65   YETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRA  124
               +K   +  +GK       +   +            A   D +C              
Sbjct  179  ---IKFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMREL  235

Query  125  TKGLMKGKHYYEVSCHDQG  143
              G+       +V+    G
Sbjct  236  NYGI-------DVAVGTPG  247


>sp|A6TGG9|RHLB_KLEP7 ATP-dependent RNA helicase RhlB OS=Klebsiella 
pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 
78578) OX=272620 GN=rhlB PE=3 SV=1
Length=421

 Score = 297 bits (759),  Expect = 4e-92, Method: Composition-based stats.
 Identities = 111/413 (27%), Positives = 176/413 (43%), Gaps = 63/413 (15%)

Query  251  PKDGFVALSKAPDGYIVKSQHSGNAQVTQ----TKFLPNAPKALIVEPSRELAEQTLNNI  306
                    ++   G  +    S    +           N P+ALI+ P+RELA Q   + 
Sbjct  45   EGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRQVNQPRALIMAPTRELAVQIHADA  104

Query  307  KQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRF  366
            +   +      L+  L  GG     QL VLE+GVDI++GT GRL D      +NL  ++ 
Sbjct  105  EPLAQ---ATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQV  161

Query  367  LVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFP  426
            +VLDEAD +   G+   I  +  ++P  T    +   ++ SATL S+ V++L+ + M+  
Sbjct  162  VVLDEADRMYDLGFIKDIRWLFRRMPPAT----QRLNMLFSATL-SYRVRELAFEQMNNA  216

Query  427  TWVDLKGEDSVPDTVH-HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW  485
             +V+++ E      +   +  P N +  RL + L                          
Sbjct  217  EYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL--------------------------  250

Query  486  SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL  545
                           ++E   D+AI+F  TK  C+++  +    G              L
Sbjct  251  ---------------LEEEWPDRAIVFANTKHRCEDIWGHLAADG---------HRVGLL  286

Query  546  HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR  605
             GD    +R + LE F +GD+  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR
Sbjct  287  TGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGR  346

Query  606  VGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
             GRA   G +ISL   E       + +  G     ++   D   T     ++L
Sbjct  347  TGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSKYNPDALMTDLPKPLRL  399


 Score = 97.9 bits (242),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 54/354 (15%), Positives = 119/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P + +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPAVIEALEKKGFHNCTPIQALALPLTLEGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          ++         +   +  +  +                +  + +  G +
Sbjct  71   LLSHPAIAD--RQVNQPRALIMAPTRELAVQIH--------------ADAEPLAQATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPATQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A++   ++
Sbjct  207  ELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLLEEEWPDRAIVFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                   +  +    ++     R  L+ G VA + +L +LE      +DI+V T
Sbjct  267  -------HRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVAT  313


>sp|Q2U2J6|PRP5_ASPOR Pre-mRNA-processing ATP-dependent RNA helicase 
prp5 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) 
OX=510516 GN=prp5 PE=3 SV=1
Length=1186

 Score = 315 bits (807),  Expect = 4e-92, Method: Composition-based stats.
 Identities = 105/492 (21%), Positives = 196/492 (40%), Gaps = 98/492 (20%)

Query  213  GLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHS  272
            GL  +    +          ++   +                 + ++K   G  +     
Sbjct  560  GLGVQTLDVIDRLGYSAPTSIQAQAIPAIMS--------GRDVIGVAKTGSGKTIAFLIP  611

Query  273  GNAQVTQTKFLPN--APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
                +   + L N   P  LI+ P+RELA Q   + K F K ++   LR +   GG   +
Sbjct  612  MFRHIKDQRPLENMEGPVGLIMTPTRELATQIHKDCKPFLKALN---LRAVCAYGGAPIK  668

Query  331  DQLSVLENGVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRM  387
            DQ++ L+ G +I+V TPGR+ DL++       NL +V ++VLDEAD +   G+   + ++
Sbjct  669  DQIADLKRGAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKI  728

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
               +          Q ++ SAT    +++ L+ K ++ P  + + G   V   +  +V  
Sbjct  729  LANV------RPDKQTVLFSATFP-RNMEALARKTLNKPVEIVVGGRSVVAPEITQIVEV  781

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
             +                                     + I++L+    + +  E++  
Sbjct  782  RSED----------------------------------KKFIRLLELLGNLYSTDENEDA  807

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
            +A+IF   +   D L +  +++G         + C+ +HG +   +R   +E FK G   
Sbjct  808  RALIFVERQEGADTLLRELMRKG---------YPCMSIHGGKDQIDRDSTIEDFKAGIFP  858

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             LI T VAARG+D+  +  V+N   P+  ++YVHR GR GRA   G A++ +  ++E+  
Sbjct  859  VLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERYS  918

Query  628  YHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGK  687
              +  +                                L  +   V   ++  VD F  K
Sbjct  919  VDIAKA--------------------------------LKQSGQSVPEPVQKMVDSFLEK  946

Query  688  VTYGQKRAAGGG  699
            V  G+++A+  G
Sbjct  947  VKAGKEKASASG  958


 Score = 108 bits (269),  Expect = 7e-23, Method: Composition-based stats.
 Identities = 65/372 (17%), Positives = 131/372 (35%), Gaps = 49/372 (13%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++ +S+ G+  +    ++ + +  PT IQA++IP I+ G DV+  A+TGSGKT AF IP+
Sbjct  553  VSKWSQCGLGVQTLDVIDRLGYSAPTSIQAQAIPAIMSGRDVIGVAKTGSGKTIAFLIPM  612

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120
             + +    KDQ+  +  +  +    +   +     +     F    +      R V  + 
Sbjct  613  FRHI----KDQRPLENMEGPVGLIMTPTRELATQIHKDCKPFLKALN-----LRAVCAYG  663

Query  121  GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD  180
            G      +   K   E+     G   +      A       +  +       +  +  F+
Sbjct  664  GAPIKDQIADLKRGAEIIVCTPGRM-IDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFE  722

Query  181  NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF  240
                +   +      +  DK  V FS               +  + L       N  ++ 
Sbjct  723  PQVMKILAN------VRPDKQTVLFSATF------PRNMEALARKTL-------NKPVEI  763

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE  300
              G      P     V +      +I   +  GN  +  T    +A +ALI    +E A+
Sbjct  764  VVGGRSVVAPEITQIVEVRSEDKKFIRLLELLGN--LYSTDENEDA-RALIFVERQEGAD  820

Query  301  QTLNNIKQFKKYIDNPKLRELLIIGG---VAARDQLSVLENGV-DIVVGTPGRLDDLVST  356
                      + +       + I GG   +     +   + G+  +++ T       V+ 
Sbjct  821  -------TLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIAT------SVAA  867

Query  357  GKLNLSQVRFLV  368
              L++ Q++ +V
Sbjct  868  RGLDVKQLKLVV  879


>sp|P29562|IF4A1_RABIT Eukaryotic initiation factor 4A-I (Fragment) 
OS=Oryctolagus cuniculus OX=9986 GN=EIF4A1 PE=1 SV=2
Length=398

 Score = 296 bits (757),  Expect = 4e-92, Method: Composition-based stats.
 Identities = 114/428 (27%), Positives = 187/428 (44%), Gaps = 74/428 (17%)

Query  228  FPACVLKNAELK--FNFGEEEFK-------FPPKDGFVALSKAPDGYIVKSQHSGNAQVT  278
            F    L  + L+  + +G E+          P   G+  +++A  G   K+     + + 
Sbjct  26   FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSG-TGKTATFAISILQ  84

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            Q +    A +AL++ P+RELA+Q    +     Y+          IGG   R ++  L+ 
Sbjct  85   QIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGAS---CHACIGGTNVRAEVQKLQM  141

Query  339  G-VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD  397
                I+VGTPGR+ D+++   L+   ++  VLDEAD +LS+G+ D I  +  ++      
Sbjct  142  EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKL------  195

Query  398  GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWE  457
                QV++ SAT+ S DV ++++K M  P  + +K E+   + +    + V  +  +L  
Sbjct  196  NSNTQVVLLSATMPS-DVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKL--  252

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
                                              L   Y    I      QA+IF  T+ 
Sbjct  253  --------------------------------DTLCDLYETLTIT-----QAVIFINTRR  275

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
              D L +               F+   +HGD    ER   +  F+ G  R LI TD+ AR
Sbjct  276  KVDWLTEKM---------HARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLAR  326

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
            GID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI++V  E ++    +     + 
Sbjct  327  GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI-----ET  381

Query  638  CYNTRLKE  645
             YNT ++E
Sbjct  382  FYNTSIEE  389


 Score = 96.0 bits (237),  Expect = 9e-20, Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 52/131 (40%), Gaps = 3/131 (2%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F +M +   + + +    +  P+ IQ  +I   + G DV+  A++G+GKT  F+I +
Sbjct  23   VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISI  82

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI---GSDGLCCQSREVK  117
            +Q +   LK  Q      T             +  Y   S  A     +     Q  +++
Sbjct  83   LQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQME  142

Query  118  EWHGCRATKGL  128
              H    T G 
Sbjct  143  APHIIVGTPGR  153


>sp|A7TJ36|DBP3_VANPO ATP-dependent RNA helicase DBP3 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=DBP3 PE=3 SV=1
Length=530

 Score = 300 bits (768),  Expect = 4e-92, Method: Composition-based stats.
 Identities = 111/427 (26%), Positives = 184/427 (43%), Gaps = 74/427 (17%)

Query  256  VALSKAPDGYIVKS-QHSGNAQVTQTKFLP--NAPKALIVEPSRELAEQTLNNIKQFKKY  312
            + +++   G        + N  +T++   P  N  + LI+ P+RELA Q  +N+      
Sbjct  156  IGVAETGSGKTFAFGVPAINNILTKSGSKPGKNGIQVLIISPTRELASQIYDNLVIL---  212

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
             D   L    + GGV   +Q + L+    +VV TPGRL DL+  G  NLS V +LVLDEA
Sbjct  213  TDKVGLECCCVYGGVPKDEQRTQLKRS-QVVVATPGRLLDLIQEGAANLSNVNYLVLDEA  271

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D +L +G+ + I  +  +     +     Q ++ +AT    +V++L+   M+ P  V + 
Sbjct  272  DRMLEKGFEEDIKNIIRE-----TKSTGRQTLMFTATWPK-EVRELASTFMNSPIKVSIG  325

Query  433  GED--SVPDTVHHVVVPVNP--KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEA  488
              D  S    +  +V  ++P  K  +L E L K    +                      
Sbjct  326  NTDELSANKRITQIVEVIDPFKKERKLLELLKKYQSGSK---------------------  364

Query  489  IKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGD  548
                            K D+ +IF   K +   +E+     G         +    +HGD
Sbjct  365  ----------------KDDKVLIFALYKKEAARVERNLNYNG---------YKVSAIHGD  399

Query  549  RKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
                +R   L+ FK G    L+ TDVAARG+DI  V  VIN+T P   ++YVHRIGR GR
Sbjct  400  LSQQQRTNALDEFKTGRSSILLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGR  459

Query  609  AERMGLAISLVATEKEKVWYHVCSSRG-----------KGCYNTRLKEDGGCTIWYNEMQ  657
            A + G A +L   +++ +   + +              K   +T+ KE      +Y ++ 
Sbjct  460  AGKTGTAHTLFTEQEKHLAGSLVNVLNGAGQPVPEELKKFGTHTKKKEHSAYGAFYKDVD  519

Query  658  LLSEIEE  664
            +  + ++
Sbjct  520  MTKKAKK  526


 Score = 96.0 bits (237),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 40/139 (29%), Positives = 57/139 (41%), Gaps = 15/139 (11%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +FS + +   I   + +  +  PT IQA S P +L G DV+  AETGSGKT AF +P 
Sbjct  116  LLSFSHISLDSRIQAEISK--FPKPTPIQAVSWPYLLAGKDVIGVAETGSGKTFAFGVPA  173

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC---------  111
            I  +  T    + GK G   +    S   +     YD            CC         
Sbjct  174  INNIL-TKSGSKPGKNGIQVL--IISPTRELASQIYDNLVILTDKVGLECCCVYGGVPKD  230

Query  112  -QSREVKEWHGCRATKGLM  129
             Q  ++K      AT G +
Sbjct  231  EQRTQLKRSQVVVATPGRL  249


>sp|A2QQA8|PRP5_ASPNC Pre-mRNA-processing ATP-dependent RNA helicase 
prp5 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 
513.88 / FGSC A1513) OX=425011 GN=prp5 PE=3 SV=2
Length=1180

 Score = 315 bits (806),  Expect = 5e-92, Method: Composition-based stats.
 Identities = 106/492 (22%), Positives = 197/492 (40%), Gaps = 98/492 (20%)

Query  213  GLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHS  272
            GL  +    +          ++   +                 + ++K   G  +     
Sbjct  553  GLGVQTLDVIDKLGYEKTTSIQAQAIPAIMS--------GRDVIGVAKTGSGKTIAFLIP  604

Query  273  GNAQVTQTKFLPN--APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
                +   + L N   P  LI+ P+RELA Q   + K F K ++   LR +   GG   +
Sbjct  605  MFRHIKDQRPLDNMEGPVGLIMTPTRELATQIHKDCKPFLKALN---LRAVCAYGGAPIK  661

Query  331  DQLSVLENGVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRM  387
            DQ++ L+ G +I+V TPGR+ DL++       NL +V ++VLDEAD +   G+   + ++
Sbjct  662  DQIADLKRGAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKI  721

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
               I          Q ++ SAT    +++ L+ K +  P  + + G+  V   +  +V  
Sbjct  722  MANI------RPDRQTVLFSATFP-RNMEALARKTLTKPIEIVVGGKSVVAPEITQIVEV  774

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
             N                                     + +++L+    + +  E++  
Sbjct  775  RNDD----------------------------------QKFVRLLELLGNLYSSDENEDA  800

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
            +A+IF   +   D L +  +++G         + C+ +HG +   +R   +E FK G   
Sbjct  801  RALIFVDRQEAADALLRELMRKG---------YPCMSIHGGKDQIDRDSTIEDFKAGIFP  851

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             LI T VAARG+D+  +  V+N   P+  ++YVHR GR GRA   G A++ +  ++E+  
Sbjct  852  VLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERYS  911

Query  628  YHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGK  687
              +  +                                L  +  +V   ++  VD F  K
Sbjct  912  VDIAKA--------------------------------LKQSGQKVPEPVQKLVDAFLEK  939

Query  688  VTYGQKRAAGGG  699
            V  G+++A+  G
Sbjct  940  VKAGKEKASASG  951


 Score = 103 bits (257),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 26/97 (27%), Positives = 50/97 (52%), Gaps = 4/97 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  +S+ G+  +    ++++ +   T IQA++IP I+ G DV+  A+TGSGKT AF IP+
Sbjct  546  VQKWSQCGLGVQTLDVIDKLGYEKTTSIQAQAIPAIMSGRDVIGVAKTGSGKTIAFLIPM  605

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYD  97
             + +    KDQ+     +  +    +   +     + 
Sbjct  606  FRHI----KDQRPLDNMEGPVGLIMTPTRELATQIHK  638


>sp|B5XYY9|RHLB_KLEP3 ATP-dependent RNA helicase RhlB OS=Klebsiella 
pneumoniae (strain 342) OX=507522 GN=rhlB PE=3 SV=1
Length=421

 Score = 297 bits (759),  Expect = 5e-92, Method: Composition-based stats.
 Identities = 111/413 (27%), Positives = 176/413 (43%), Gaps = 63/413 (15%)

Query  251  PKDGFVALSKAPDGYIVKSQHSGNAQVTQ----TKFLPNAPKALIVEPSRELAEQTLNNI  306
                    ++   G  +    S    +           N P+ALI+ P+RELA Q   + 
Sbjct  45   EGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRQVNQPRALIMAPTRELAVQIHADA  104

Query  307  KQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRF  366
            +   +      L+  L  GG     QL VLE+GVDI++GT GRL D      +NL  ++ 
Sbjct  105  EPLAQ---ATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQV  161

Query  367  LVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFP  426
            +VLDEAD +   G+   I  +  ++P  T    +   ++ SATL S+ V++L+ + M+  
Sbjct  162  VVLDEADRMYDLGFIKDIRWLFRRMPPAT----QRLNMLFSATL-SYRVRELAFEQMNNA  216

Query  427  TWVDLKGEDSVPDTVH-HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW  485
             +V+++ E      +   +  P N +  RL + L                          
Sbjct  217  EYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL--------------------------  250

Query  486  SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL  545
                           ++E   D+AIIF  TK  C+++  +    G              L
Sbjct  251  ---------------LEEEWPDRAIIFANTKHRCEDIWGHLAADG---------HRVGLL  286

Query  546  HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR  605
             GD    +R + L+ F +GD+  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR
Sbjct  287  TGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGR  346

Query  606  VGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
             GRA   G +ISL   E       + +  G     ++   D   T     ++L
Sbjct  347  TGRAGASGNSISLACEEYALNLPAIETYIGHSIPVSKYNPDALMTDLPKPLRL  399


 Score = 97.9 bits (242),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 54/354 (15%), Positives = 118/354 (33%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P + +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPAVIEALEKKGFHNCTPIQALALPLTLEGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          ++         +   +  +  +                +  + +  G +
Sbjct  71   LLSHPAIAD--RQVNQPRALIMAPTRELAVQIH--------------ADAEPLAQATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPATQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLLEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  +    ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|Q0CGJ9|SUB2_ASPTN ATP-dependent RNA helicase sub2 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=sub2 
PE=3 SV=1
Length=438

 Score = 297 bits (760),  Expect = 5e-92, Method: Composition-based stats.
 Identities = 99/382 (26%), Positives = 161/382 (42%), Gaps = 63/382 (16%)

Query  256  VALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDN  315
              L +A  G + K+       + Q + +P     L++  +RELA Q  N   +F KY+  
Sbjct  94   DVLCQAKSG-LGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYL--  150

Query  316  PKLRELLIIGGVAARDQLSVLENG---VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
            P ++  +  GG   +  + VL N     +IVVGTPGRL+ LV   KL+L  V+  VLDE 
Sbjct  151  PDVKTAVFYGGTPIQKDIEVLSNKESYPNIVVGTPGRLNALVREKKLSLRNVKAFVLDEC  210

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D +L       + R   +I + T   K  QV++ SATL S +++ + +K M  P  V + 
Sbjct  211  DKMLD---QIDMRRDVQEIFRATPADK--QVMMFSATL-SQEIRPICKKFMRNPLEVYVD  264

Query  433  GEDS-VPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
             +       +    + ++                                          
Sbjct  265  DDTKLTLHGLQQYYIKLSESE---------------------------------------  285

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
             K       +   + +Q IIF ++    + L++   +           F  + +H     
Sbjct  286  -KNRKLNDLLDNLEFNQVIIFVKSTQRANELDKLLRE---------CNFPSIAVHSGVSQ  335

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
             ER +  + FK+ + R  + TDV  RGIDI  +   IN  LP +  +Y+HR+GR GR   
Sbjct  336  EERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGT  395

Query  612  MGLAISLVATE-KEKVWYHVCS  632
             GL+IS V++E  EKV   +  
Sbjct  396  KGLSISFVSSEDDEKVLKDIEK  417


 Score = 62.8 bits (151),  Expect = 5e-09, Method: Composition-based stats.
 Identities = 15/63 (24%), Positives = 31/63 (49%), Gaps = 3/63 (5%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F +  +  E+ +A+ +  +  P+++    IP  +   DVL  A++G GKT  F +  +
Sbjct  58   TGFRDFLLKGELLRAITDCGFEHPSEV---CIPTAILNVDVLCQAKSGLGKTAVFVLTTL  114

Query  62   QIV  64
              +
Sbjct  115  HQL  117


>sp|A8ACT3|RHLB_CITK8 ATP-dependent RNA helicase RhlB OS=Citrobacter 
koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) 
OX=290338 GN=rhlB PE=3 SV=1
Length=421

 Score = 296 bits (758),  Expect = 5e-92, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 187/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++N+       ++   L                    ++   G  +   
Sbjct  13   DFALHPKVIEALENKGFHNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQTKFLP----NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +     +     N P+ALI+ P+RELA Q   + +   +      L+  L  GG
Sbjct  65   TSSFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQ---TTGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +V+++ E      +   + 
Sbjct  182  LFRRMPPAN----QRLNMLFSATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AI+F  TK  C+++  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIVFANTKHRCEDIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + +  G     ++   +   T     ++L
Sbjct  367  NLPAIEAYIGHSIPVSKYNPEALMTNLPKPLRL  399


 Score = 96.7 bits (239),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 54/354 (15%), Positives = 118/354 (33%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E   +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPKVIEALENKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSSFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + +  G +
Sbjct  71   LLSHPAIDD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAQTTGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPANQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A++   ++
Sbjct  207  ELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIVFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  +    ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|Q9Y7T7|PRP28_SCHPO Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Schizosaccharomyces pombe (strain 972 / ATCC 
24843) OX=284812 GN=prp28 PE=3 SV=1
Length=662

 Score = 304 bits (778),  Expect = 6e-92, Method: Composition-based stats.
 Identities = 101/457 (22%), Positives = 177/457 (39%), Gaps = 77/457 (17%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            +N ++ GL  E+   +K         ++ A +             +   + +++   G  
Sbjct  249  RNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLL--------QRKDLIGIAETGSGKT  300

Query  267  VKSQHSGNAQVTQTKFLPN-----APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLREL  321
                      +++   L        P A+++ P+RELA+Q      +F + +     R +
Sbjct  301  AAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLG---FRCV  357

Query  322  LIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYS  381
             ++GG A  +Q   +  G  IVV TPGRL D +      LSQ  ++V+DEAD +L  G+ 
Sbjct  358  SVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFE  417

Query  382  DFINRMHNQIPQVTSDGK-------------RLQVIVCSATLHSFDVKKLSEKIMHFPTW  428
            D +N++ + +P   +  K             R Q I+ SATL    V  L++  +  P  
Sbjct  418  DDVNKILSSLPSSNASEKDGSILATANSSSSRRQTIMFSATLPPR-VANLAKSYLIEPVM  476

Query  429  VDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEA  488
            + +       D V   V                                 ++  + W   
Sbjct  477  LTIGNIGQAVDRVEQRV------------------------------EMISDDSKKWRRV  506

Query  489  IKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGD  548
             +IL+                IIF   K + + + +     G         +  V LHG 
Sbjct  507  EEILES--------NRFSPPIIIFVNLKRNIEAIAKQLNAIG---------WHAVTLHGS  549

Query  549  RKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
            +   +R++ +E+ +      L+ TD+A RGIDI  V  V+N  +    ++Y HRIGR GR
Sbjct  550  KSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGR  609

Query  609  AERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            A + G AI+ +  E   V+Y +     +        E
Sbjct  610  AGKSGTAITFLGPEDTDVYYDLRVLLSRSAKAHIPDE  646


 Score = 97.1 bits (240),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 51/103 (50%), Gaps = 1/103 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  + E G+  E+ + ++++++  P+ IQ  +IP++L   D++  AETGSGKT AF IP+
Sbjct  248  LRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPL  307

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
            I  + + L    E            +   +        G+ FA
Sbjct  308  IIAISK-LPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFA  349


>sp|Q2UMH8|DBP3_ASPOR ATP-dependent RNA helicase dbp3 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp3 
PE=3 SV=1
Length=498

 Score = 299 bits (765),  Expect = 6e-92, Method: Composition-based stats.
 Identities = 114/430 (27%), Positives = 178/430 (41%), Gaps = 67/430 (16%)

Query  214  LAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSG  273
            ++F   P  K+    P    K+                    + +++   G  +      
Sbjct  81   ISFSHLPPCKDDLYAPLSSFKSPT--SIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPC  138

Query  274  NAQVT---QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
              ++     TK  P  P A+I+ P+RELA Q  +   Q  K+  +  +R   + GGV   
Sbjct  139  LKKIQDSAMTKQKPYRPLAVIISPTRELAMQIYD---QLLKFSGSVGVRVACVFGGVRKE  195

Query  331  DQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ  390
            +Q   L+    +VV TPGRL DL + G ++L +V++LVLDEAD +L +G+   I  +   
Sbjct  196  EQREALKT-AGVVVATPGRLKDLQNDGSVDLGKVKYLVLDEADRMLDKGFEQDIKDIIRP  254

Query  391  IPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSV----PDTVHHVVV  446
            +P       + Q I+ +AT     V+ L+   M  P  V + G+ S        +  VV 
Sbjct  255  MPV-----SKRQTIMFTATWPP-SVRDLASTFMSSPVTVTIGGDPSADPRANTRIKQVVE  308

Query  447  PVNP--KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
             V P  K  RL + L +S                                          
Sbjct  309  VVKPHEKESRLVQLLNRSQRGVP-------------------------------------  331

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
            + ++ + FC  K +   +E+    +G         F    +HGD    ER ++L+ FK G
Sbjct  332  EPEKVLAFCLYKKEAMRIERLLRTKG---------FKVAGIHGDLSQQERFRSLDAFKTG  382

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
                L+ TDVAARG+DI  V  VINVT P   ++YVHRIGR GRA   G A++L     +
Sbjct  383  AATVLVATDVAARGLDIPSVKQVINVTFPLTVEDYVHRIGRTGRAGAEGHAVTLFTETDK  442

Query  625  KVWYHVCSSR  634
                 + +  
Sbjct  443  AQSGALINVL  452


 Score = 99.8 bits (247),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 62/142 (44%), Gaps = 16/142 (11%)

Query  1    MAAFSEMG-VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
            + +FS +     ++   +    +  PT IQ+ + PL+  G DV+  AETGSGKT AF +P
Sbjct  80   IISFSHLPPCKDDLYAPLSS--FKSPTSIQSATWPLLFAGRDVIGIAETGSGKTLAFGLP  137

Query  60   VIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG-SDGLCC-------  111
             ++ + ++   +Q+  +    I    S   +  M  YD+   F+      + C       
Sbjct  138  CLKKIQDSAMTKQKPYRPLAVI---ISPTRELAMQIYDQLLKFSGSVGVRVACVFGGVRK  194

Query  112  --QSREVKEWHGCRATKGLMKG  131
              Q   +K      AT G +K 
Sbjct  195  EEQREALKTAGVVVATPGRLKD  216


>sp|B8CHZ1|RHLB_SHEPW ATP-dependent RNA helicase RhlB OS=Shewanella 
piezotolerans (strain WP3 / JCM 13877) OX=225849 GN=rhlB 
PE=3 SV=1
Length=437

 Score = 297 bits (760),  Expect = 6e-92, Method: Composition-based stats.
 Identities = 104/457 (23%), Positives = 184/457 (40%), Gaps = 69/457 (15%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
            +K   D  L  E+   +          ++   L     +++            ++   G 
Sbjct  8    TKKFADFPLHKEVQQALNEVGFEFCTPIQALSLPILLAKKD--------IAGQAQTGTGK  59

Query  266  IVKSQHSG----NAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLREL  321
             +    +       +   T+   N P+A+I+ P+RELA Q   +     K+     L+  
Sbjct  60   TLAFLVATFNHLLTEAAPTERKINQPRAIIMAPTRELAIQIAKDANLLAKHTG---LKVG  116

Query  322  LIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYS  381
            ++ GG     Q  VL+ G+DI++GT GR+ D V  G +++S ++ +VLDEAD +   G+ 
Sbjct  117  IVYGGEGYEAQRKVLDKGIDILIGTTGRIIDYVRQGVIDVSAIQAVVLDEADRMFDLGFI  176

Query  382  DFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV  441
              I  +  ++P    D K    ++ SATL S  V++L+   M+ P  V++   +     +
Sbjct  177  KDIRFLFRRMP----DAKSRLNMLFSATL-SMKVQELAYDHMNEPEKVEIAPNEKTSKNI  231

Query  442  HHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI  501
               +   + +                                         K    +  +
Sbjct  232  KEEIFYPSMEE----------------------------------------KMPLLLSLL  251

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
            +E   ++AI+F  TK  C+ +  +          +G       L GD    +R + LE+F
Sbjct  252  EEDWPEKAIVFSNTKHSCEKVWSWL---------EGDGHRVGLLTGDVPQKKRLRILEQF  302

Query  562  KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT  621
              GD+  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA + G+++S    
Sbjct  303  TSGDIDVLVATDVAARGLHIADVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFACE  362

Query  622  EKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
            E       + S        T    +          ++
Sbjct  363  EYALNLPAIESYIQHSIPVTSYDSEALLDDIPAPKRI  399


 Score = 101 bits (252),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 60/356 (17%), Positives = 119/356 (33%), Gaps = 62/356 (17%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F++  +  E+ QA+ E+ +   T IQA S+P++L   D+   A+TG+GKT AF +   
Sbjct  9    KKFADFPLHKEVQQALNEVGFEFCTPIQALSLPILLAKKDIAGQAQTGTGKTLAFLVATF  68

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHG  121
              +       +  +K         +   +  +    + +       GL            
Sbjct  69   NHLLTEAAPTE--RKINQPRAIIMAPTRELAIQI-AKDANLLAKHTGLKV----------  115

Query  122  CRATKGLMKGKHYYEV--SCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQF  179
                 G++ G   YE      D+G+           + +GT                 + 
Sbjct  116  -----GIVYGGEGYEAQRKVLDKGI----------DILIGTT---------------GRI  145

Query  180  DNYGEEFTMHDTIGC-YLDIDKGHVKFSKNG-KDLGLAFEIPPHMK---NQALFPACVLK  234
             +Y  +  + D      + +D+    F     KD+   F   P  K   N        +K
Sbjct  146  IDYVRQ-GVIDVSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAKSRLNMLFSATLSMK  204

Query  235  NAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEP  294
              EL ++   E  K              +     S       +          KA++   
Sbjct  205  VQELAYDHMNEPEKVEIAPNEKTSKNIKEEIFYPSMEEKMPLLLSLLEEDWPEKAIVFSN  264

Query  295  SRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
            ++       ++ ++   +++    R  L+ G V  + +L +LE      +D++V T
Sbjct  265  TK-------HSCEKVWSWLEGDGHRVGLLTGDVPQKKRLRILEQFTSGDIDVLVAT  313


>sp|Q7XMK8|RH6_ORYSJ DEAD-box ATP-dependent RNA helicase 6 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os04g0533000 PE=2 SV=1
Length=498

 Score = 299 bits (765),  Expect = 6e-92, Method: Composition-based stats.
 Identities = 98/382 (26%), Positives = 160/382 (42%), Gaps = 61/382 (16%)

Query  254  GFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI  313
            G   L++A +G   K+       + +     NA + +I+ P+RELA QT    K+  K++
Sbjct  161  GSDILARAKNG-TGKTAAFCIPALEKIDQDKNAIQVVILVPTRELALQTSQVCKELGKHL  219

Query  314  DNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEAD  373
               K++ ++  GG + +D +  L   V ++VGTPGR+ DL   G   L     LV+DEAD
Sbjct  220  ---KIQVMVTTGGTSLKDDIVRLYQPVHLLVGTPGRILDLTKKGVCVLKNCSMLVMDEAD  276

Query  374  GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG  433
             LLS  +   I  +   +P         Q+++ SAT     VK+  +K +  P  ++L  
Sbjct  277  KLLSPEFQPSIQELIRYLP------SNRQILMFSATFP-VTVKEFKDKYLPKPYVINLMD  329

Query  434  EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK  493
            E ++   +      V  +                                         K
Sbjct  330  ELTLK-GITQFYAFVEERQ----------------------------------------K  348

Query  494  GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
                     + +++Q+IIFC +    + L +   + G         +SC  +H       
Sbjct  349  VHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELG---------YSCFYIHAKMLQDH  399

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
            R +    F+ G  R L+CTD+  RGIDI  V  VIN   P   + Y+HR+GR GR   +G
Sbjct  400  RNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKSAETYLHRVGRSGRFGHLG  459

Query  614  LAISLVATEKEKVWYHVCSSRG  635
            LA++L+  E     Y +    G
Sbjct  460  LAVNLITYEDRFNLYRIEQELG  481


 Score = 96.4 bits (238),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 40/91 (44%), Gaps = 9/91 (10%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +  +  E+   + E  +  P+ IQ ESIP+ L G D+L  A+ G+GKT AF IP ++ 
Sbjct  126  FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEK  185

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
            + +     Q                 +  + 
Sbjct  186  IDQDKNAIQV---------VILVPTRELALQ  207


>sp|Q4R8K5|IF4A1_MACFA Eukaryotic initiation factor 4A-I OS=Macaca 
fascicularis OX=9541 GN=EIF4A1 PE=2 SV=1
Length=406

 Score = 296 bits (757),  Expect = 6e-92, Method: Composition-based stats.
 Identities = 114/428 (27%), Positives = 187/428 (44%), Gaps = 74/428 (17%)

Query  228  FPACVLKNAELK--FNFGEEEFK-------FPPKDGFVALSKAPDGYIVKSQHSGNAQVT  278
            F    L  + L+  + +G E+          P   G+  +++A  G   K+     + + 
Sbjct  34   FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSG-TGKTATFAISILQ  92

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            Q +    A +AL++ P+RELA+Q    +     Y+          IGG   R ++  L+ 
Sbjct  93   QIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGAS---CHACIGGTNVRAEVQKLQM  149

Query  339  G-VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD  397
                I+VGTPGR+ D+++   L+   ++  VLDEAD +LS+G+ D I  +  ++      
Sbjct  150  EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKL------  203

Query  398  GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWE  457
                QV++ SAT+ S DV ++++K M  P  + +K E+   + +    + V  +  +L  
Sbjct  204  NSNTQVVLLSATMPS-DVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKL--  260

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
                                              L   Y    I      QA+IF  T+ 
Sbjct  261  --------------------------------DTLCDLYETLTIT-----QAVIFINTRR  283

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
              D L +               F+   +HGD    ER   +  F+ G  R LI TD+ AR
Sbjct  284  KVDWLTEKM---------HARDFTASAMHGDMDQKERDVIMREFRSGSSRVLITTDLLAR  334

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
            GID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI++V  E ++    +     + 
Sbjct  335  GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI-----ET  389

Query  638  CYNTRLKE  645
             YNT ++E
Sbjct  390  FYNTSIEE  397


 Score = 96.0 bits (237),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 52/131 (40%), Gaps = 3/131 (2%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F +M +   + + +    +  P+ IQ  +I   + G DV+  A++G+GKT  F+I +
Sbjct  31   VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISI  90

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI---GSDGLCCQSREVK  117
            +Q +   LK  Q      T             +  Y   S  A     +     Q  +++
Sbjct  91   LQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQME  150

Query  118  EWHGCRATKGL  128
              H    T G 
Sbjct  151  APHIIVGTPGR  161


>sp|A4R715|DHH1_PYRO7 ATP-dependent RNA helicase DHH1 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=DHH1 PE=3 SV=2
Length=535

 Score = 300 bits (768),  Expect = 6e-92, Method: Composition-based stats.
 Identities = 106/446 (24%), Positives = 179/446 (40%), Gaps = 71/446 (16%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             ++ GL  ++   +          ++   +       +     K+G    +     ++V 
Sbjct  49   FENFGLKRDLLMGIFEAGFEKPSPIQEESIPVALTGRDILARAKNG----TGKTAAFVVP  104

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
            +  + N +V++        + LI+ P+RELA QT    K   K++    +  ++  GG  
Sbjct  105  ALETINPKVSKI-------QCLILVPTRELAMQTSQVCKTLGKHLG---INVMVTTGGTT  154

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
             RD +  L++ V IVVGTPGR+ DL      +LS+    ++DEAD LLS  ++  I ++ 
Sbjct  155  LRDDILRLQDPVHIVVGTPGRILDLAGKNVADLSECPMFIMDEADKLLSIEFTPVIEQLL  214

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
               P      K  QV++ SAT     VK+ S+K M  P  ++L  ++     +      V
Sbjct  215  QFHP------KDRQVMLFSATFP-ISVKEFSDKNMTNPYEINLM-DELTLRGITQYYAFV  266

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
              K                                         K         + +++Q
Sbjct  267  EEKQ----------------------------------------KVHCLNTLFSKLQINQ  286

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
            +IIFC +    + L +   + G         +SC   H   +   R +    F+ G  R 
Sbjct  287  SIIFCNSTNRVELLAKKITELG---------YSCFYSHAKMQQQARNRVFHDFRNGVCRN  337

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            L+C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR   +GLAI+L++ E     Y
Sbjct  338  LVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLISWEDRFNLY  397

Query  629  HVCSSRGKGCYNTRLKEDGGCTIWYN  654
            ++    G          D    ++ N
Sbjct  398  NIERDLGTEIQPIPSTIDKSLYVYDN  423


 Score = 100 bits (249),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 40/91 (44%), Gaps = 9/91 (10%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F   G+  ++   + E  +  P+ IQ ESIP+ L G D+L  A+ G+GKT AF +P ++ 
Sbjct  49   FENFGLKRDLLMGIFEAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVVPALET  108

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
            +   +   Q                 +  M 
Sbjct  109  INPKVSKIQ---------CLILVPTRELAMQ  130


>sp|A8G0U0|RHLB_SHESH ATP-dependent RNA helicase RhlB OS=Shewanella 
sediminis (strain HAW-EB3) OX=425104 GN=rhlB PE=3 SV=1
Length=435

 Score = 297 bits (759),  Expect = 6e-92, Method: Composition-based stats.
 Identities = 105/418 (25%), Positives = 172/418 (41%), Gaps = 65/418 (16%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP-----NAPKALIVEPSRELAEQ  301
                 K      ++   G  +            T  +P     N P+A+I+ P+RELA Q
Sbjct  41   PILLQKKDIAGQAQTGTGKTLAFLV-ATFNHLLTTPIPEGRQLNQPRAIIMAPTRELAIQ  99

Query  302  TLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNL  361
               +     K+     L+  ++ GG +   Q  VL+ GVDI++GT GR+ D V  G +N+
Sbjct  100  IAKDADLLAKHTG---LKVGIVYGGESYEVQRKVLDKGVDILIGTTGRIIDYVRQGIINV  156

Query  362  SQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEK  421
            S ++ +VLDEAD +   G+   I  +  ++P    D K    ++ SATL S  V++L+  
Sbjct  157  SAIQAVVLDEADRMFDLGFIKDIRFLFRRMP----DAKSRLNMLFSATL-SMKVQELAYD  211

Query  422  IMHFPTWVDLKGEDSVPDTVH-HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480
             M+ P  V++   +     +   +  P   +  RL                         
Sbjct  212  HMNEPEKVEIAPNEKTSKNIKEEIFYPSMDEKMRL-------------------------  246

Query  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540
                             +  ++E   D+AI+F  TK  C+ L  +          +G   
Sbjct  247  ----------------LLTLLEEDWPDKAIVFSNTKHSCEKLWSWL---------EGDGH  281

Query  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600
                L GD    +R + LE F +G +  L+ TDVAARG+ I  V +V N  LPD+ ++YV
Sbjct  282  RVGLLTGDVPQKKRIRILELFTEGKLDVLVATDVAARGLHISDVSHVYNYDLPDDCEDYV  341

Query  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
            HRIGR GRA + G+++S    E       +          T    +         +++
Sbjct  342  HRIGRTGRAGKKGVSVSFACEEYALNLPAIEEYINHTIPVTNYDSEALLDDIPAPVRV  399


 Score = 101 bits (252),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 61/353 (17%), Positives = 121/353 (34%), Gaps = 60/353 (17%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F++  +  EI  A+ E  +   T IQA S+P++L   D+   A+TG+GKT AF +     
Sbjct  11   FADFSLQTEIKTALNESGFEYCTPIQALSLPILLQKKDIAGQAQTGTGKTLAFLVATFNH  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +  T     EG++         +   +  +    + +       GL              
Sbjct  71   LLTTP--IPEGRQLNQPRAIIMAPTRELAIQI-AKDADLLAKHTGLKV------------  115

Query  124  ATKGLMKGKHYYEV--SCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDN  181
               G++ G   YEV     D+G+           + +GT                 +  +
Sbjct  116  ---GIVYGGESYEVQRKVLDKGV----------DILIGTT---------------GRIID  147

Query  182  YGEEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFEIPPHMK---NQALFPACVLKNAE  237
            Y  +  ++ +    + +D+    F     KD+   F   P  K   N        +K  E
Sbjct  148  YVRQGIINVSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAKSRLNMLFSATLSMKVQE  207

Query  238  LKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRE  297
            L ++   E  K              +     S       +          KA++   ++ 
Sbjct  208  LAYDHMNEPEKVEIAPNEKTSKNIKEEIFYPSMDEKMRLLLTLLEEDWPDKAIVFSNTK-  266

Query  298  LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                  ++ ++   +++    R  L+ G V  + ++ +L    E  +D++V T
Sbjct  267  ------HSCEKLWSWLEGDGHRVGLLTGDVPQKKRIRILELFTEGKLDVLVAT  313


>sp|A2QFL3|DBP3_ASPNC ATP-dependent RNA helicase dbp3 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=dbp3 PE=3 SV=1
Length=495

 Score = 298 bits (764),  Expect = 6e-92, Method: Composition-based stats.
 Identities = 120/430 (28%), Positives = 181/430 (42%), Gaps = 74/430 (17%)

Query  225  QALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKS--QHSGNAQVTQTKF  282
            ++      +++A   F F             + +++   G  +        N Q +  K 
Sbjct  96   ESFTSPTAIQSATWPFLFS--------GRDVIGIAETGSGKTLGFGLPCLKNLQDSAKKG  147

Query  283  LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDI  342
             P  P A+++ P+RELA Q  +   Q  K+ +   ++   I GGV   +Q   L+    I
Sbjct  148  KPYKPTAVMISPTRELAMQIHD---QISKFAELVDIKVACIFGGVKKEEQREALKTAA-I  203

Query  343  VVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            VV TPGRL DL + G ++L +V++LVLDEAD +L +G+   I  +   +P       + Q
Sbjct  204  VVATPGRLKDLQNDGSVDLGKVKYLVLDEADRMLDKGFEQDIKDIIRPMPV-----SKRQ  258

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSV----PDTVHHVVVPVNP--KTDRLW  456
             ++ +AT     V+ L+   M  P  V + GE S        +  VV  V P  K  RL 
Sbjct  259  TVMFTATWPPV-VRDLAATFMTSPVTVTIGGEPSADPRANTRIKQVVEVVKPHEKEQRLV  317

Query  457  ERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTK  516
            + L K                                             D+ ++FC  K
Sbjct  318  QLLNKYQKGPS-------------------------------------SSDKILVFCLYK  340

Query  517  IDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAA  576
             +   +E+    +G         F    +HGD    ER ++LE FKKG    L+ TDVAA
Sbjct  341  KEAVRVERLLWNKG---------FKVAGIHGDLGQQERFKSLESFKKGVSTVLVATDVAA  391

Query  577  RGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGK  636
            RG+DI  V  VINVT P   ++YVHRIGR GRA   G AI+L     +     + +    
Sbjct  392  RGLDIPSVKLVINVTFPLTVEDYVHRIGRTGRAGAEGHAITLFTEVDKAQSGALINVL--  449

Query  637  GCYNTRLKED  646
               N  + ED
Sbjct  450  KAANQDVPED  459


 Score = 97.9 bits (242),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 17/142 (12%)

Query  1    MAAFSEMG-VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
            + +FS +      + + +E   +  PT IQ+ + P +  G DV+  AETGSGKT  F +P
Sbjct  78   ITSFSHLPTCNSALYRPLES--FTSPTAIQSATWPFLFSGRDVIGIAETGSGKTLGFGLP  135

Query  60   VIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD-GLCC-------  111
             ++ + ++ K      K         S   +  M  +D+ S FA   D  + C       
Sbjct  136  CLKNLQDSAKK----GKPYKPTAVMISPTRELAMQIHDQISKFAELVDIKVACIFGGVKK  191

Query  112  --QSREVKEWHGCRATKGLMKG  131
              Q   +K      AT G +K 
Sbjct  192  EEQREALKTAAIVVATPGRLKD  213


>sp|A8GZJ0|RHLB_SHEPA ATP-dependent RNA helicase RhlB OS=Shewanella 
pealeana (strain ATCC 700345 / ANG-SQ1) OX=398579 GN=rhlB 
PE=3 SV=1
Length=436

 Score = 297 bits (759),  Expect = 6e-92, Method: Composition-based stats.
 Identities = 106/430 (25%), Positives = 177/430 (41%), Gaps = 61/430 (14%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKF----LPNAPKALIVEPSRELAEQT  302
                 K      ++   G  +    +    +  T        N P+A+I+ P+RELA Q 
Sbjct  41   PILLEKKDIAGQAQTGTGKTLAFLVATFNHLLSTPIPAERQLNQPRAIIMAPTRELAIQI  100

Query  303  LNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLS  362
              +     K+     L+  ++ GG     Q  VL+ GVDI++GT GR+ D V  G +N+S
Sbjct  101  AKDANLLAKHTG---LKVGIVYGGEGYEVQRKVLDKGVDILIGTTGRIIDYVRQGVINVS  157

Query  363  QVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKI  422
             ++ +VLDEAD +   G+   I  +  ++P    D K    ++ SATL S  V++L+   
Sbjct  158  CIQAVVLDEADRMFDLGFIKDIRFLFRRMP----DAKSRLNMLFSATL-SMKVQELAYDH  212

Query  423  MHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSP  482
            M+ P  V++   +     +   +   + +                               
Sbjct  213  MNEPEKVEIAPNEKTSKNIKEEIFYPSMEE------------------------------  242

Query  483  EMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSC  542
                      K    +  ++E   ++AI+F  TK  C+ +  +          +G     
Sbjct  243  ----------KMPLLLSLLEEDWPEKAIVFSNTKHSCEKVWSWL---------EGDGHRA  283

Query  543  VCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHR  602
              L GD    +R + LE+F KGD+  L+ TDVAARG+ I  V +V N  LPD+ ++YVHR
Sbjct  284  GLLTGDVPQKKRLRILEQFTKGDIDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHR  343

Query  603  IGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEI  662
            IGR GRA + G+++S    E       + S        T    D         +++  + 
Sbjct  344  IGRTGRAGQKGVSVSFACEEYALNLPAIESYIQHSIPVTSYDSDALLDDIPPPVRIHRKP  403

Query  663  EEHLNCTISQ  672
              H   T  +
Sbjct  404  STHTRNTRDR  413


 Score = 105 bits (263),  Expect = 6e-23, Method: Composition-based stats.
 Identities = 62/355 (17%), Positives = 121/355 (34%), Gaps = 64/355 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F++  +  E+ QA+ E  +   T IQA S+P++L   D+   A+TG+GKT AF +     
Sbjct  11   FADFPLHKEVHQALNEAGFEFCTPIQALSLPILLEKKDIAGQAQTGTGKTLAFLVATFNH  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +  T       ++         +   +  +    + +       GL              
Sbjct  71   LLSTP--IPAERQLNQPRAIIMAPTRELAIQI-AKDANLLAKHTGLKV------------  115

Query  124  ATKGLMKGKHYYEV--SCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDN  181
               G++ G   YEV     D+G+           + +GT                 +  +
Sbjct  116  ---GIVYGGEGYEVQRKVLDKGV----------DILIGTT---------------GRIID  147

Query  182  YGEEFTMHDTIGCY--LDIDKGHVKFSKNG-KDLGLAFEIPPHMK---NQALFPACVLKN  235
            Y  +  ++  + C   + +D+    F     KD+   F   P  K   N        +K 
Sbjct  148  YVRQGVIN--VSCIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAKSRLNMLFSATLSMKV  205

Query  236  AELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPS  295
             EL ++   E  K              +     S       +          KA++   +
Sbjct  206  QELAYDHMNEPEKVEIAPNEKTSKNIKEEIFYPSMEEKMPLLLSLLEEDWPEKAIVFSNT  265

Query  296  RELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
            +       ++ ++   +++    R  L+ G V  + +L +LE      +DI+V T
Sbjct  266  K-------HSCEKVWSWLEGDGHRAGLLTGDVPQKKRLRILEQFTKGDIDILVAT  313


>sp|B0TJ29|RHLB_SHEHH ATP-dependent RNA helicase RhlB OS=Shewanella 
halifaxensis (strain HAW-EB4) OX=458817 GN=rhlB PE=3 SV=1
Length=436

 Score = 297 bits (759),  Expect = 7e-92, Method: Composition-based stats.
 Identities = 112/466 (24%), Positives = 183/466 (39%), Gaps = 81/466 (17%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKF----LPNAPKALIVEPSRELAEQT  302
                 K      ++   G  +    +    +  T        N P+A+I+ P+RELA Q 
Sbjct  41   PILLEKKDIAGQAQTGTGKTLAFLVATFNHLLSTPIPAERQLNQPRAIIMAPTRELAIQI  100

Query  303  LNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLS  362
              +     K+     L+  ++ GG     Q  VL+ GVDI++GT GR+ D V  G +N+S
Sbjct  101  AKDANLLAKHTG---LKVGIVYGGEGYEVQRKVLDKGVDILIGTTGRIIDYVRQGVINVS  157

Query  363  QVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKI  422
             ++ +VLDEAD +   G+   I  +  ++P    D K    ++ SATL S  V++L+   
Sbjct  158  CIQAVVLDEADRMFDLGFIKDIRFLFRRMP----DAKSRLNMLFSATL-SMKVQELAYDH  212

Query  423  MHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSP  482
            M+ P  V++   +     +   +   + +                               
Sbjct  213  MNEPEKVEIAPNEKTSKNIKEEIFYPSMEE------------------------------  242

Query  483  EMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSC  542
                      K    +  ++E   ++AI+F  TK  C+ +  +          +G     
Sbjct  243  ----------KMPLLLSLLEEDWPEKAIVFSNTKHSCEKVWSWL---------EGDGHRA  283

Query  543  VCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHR  602
              L GD    +R + LE+F KG++  L+ TDVAARG+ I  V +V N  LPD+ ++YVHR
Sbjct  284  GLLTGDVPQKKRLRILEQFTKGEIDILVATDVAARGLHIADVSHVYNYDLPDDCEDYVHR  343

Query  603  IGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEI  662
            IGR GRA + G+++S    E       + S        T    D           LL +I
Sbjct  344  IGRTGRAGQKGISVSFACEEYALNLPAIESYIQHSIPVTSYDSDA----------LLDDI  393

Query  663  EEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGG--SYKGHVD  706
               +           + P          G  R  GG     + H  
Sbjct  394  PPPVRIH--------RKPSTHTRNTRDRGASRPQGGQRSGPRRHDR  431


 Score = 106 bits (265),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 62/355 (17%), Positives = 121/355 (34%), Gaps = 64/355 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F++  +  E+ QA+ E  +   T IQA S+P++L   D+   A+TG+GKT AF +     
Sbjct  11   FADFPLHKEVHQALNEAGFEFCTPIQALSLPILLEKKDIAGQAQTGTGKTLAFLVATFNH  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +  T       ++         +   +  +    + +       GL              
Sbjct  71   LLSTP--IPAERQLNQPRAIIMAPTRELAIQI-AKDANLLAKHTGLKV------------  115

Query  124  ATKGLMKGKHYYEV--SCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDN  181
               G++ G   YEV     D+G+           + +GT                 +  +
Sbjct  116  ---GIVYGGEGYEVQRKVLDKGV----------DILIGTT---------------GRIID  147

Query  182  YGEEFTMHDTIGCY--LDIDKGHVKFSKNG-KDLGLAFEIPPHMK---NQALFPACVLKN  235
            Y  +  ++  + C   + +D+    F     KD+   F   P  K   N        +K 
Sbjct  148  YVRQGVIN--VSCIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAKSRLNMLFSATLSMKV  205

Query  236  AELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPS  295
             EL ++   E  K              +     S       +          KA++   +
Sbjct  206  QELAYDHMNEPEKVEIAPNEKTSKNIKEEIFYPSMEEKMPLLLSLLEEDWPEKAIVFSNT  265

Query  296  RELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
            +       ++ ++   +++    R  L+ G V  + +L +LE      +DI+V T
Sbjct  266  K-------HSCEKVWSWLEGDGHRAGLLTGDVPQKKRLRILEQFTKGEIDILVAT  313


>sp|A7MQI2|RHLB_CROS8 ATP-dependent RNA helicase RhlB OS=Cronobacter 
sakazakii (strain ATCC BAA-894) OX=290339 GN=rhlB PE=3 
SV=1
Length=421

 Score = 296 bits (758),  Expect = 7e-92, Method: Composition-based stats.
 Identities = 117/452 (26%), Positives = 192/452 (42%), Gaps = 69/452 (15%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGF---VALSKAPDGYIV  267
            D  L   +   ++ +  +    ++   L       +     + G    +A   +   Y++
Sbjct  13   DFALHPVVVQALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLL  72

Query  268  KSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
                + N QV Q       P+ALI+ P+RELA Q  ++ +      +   ++  L  GG 
Sbjct  73   SHPAAENRQVNQ-------PRALIMAPTRELAVQIHSDAEPLA---EATGIKLGLAYGGD  122

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM  387
                QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  +
Sbjct  123  GYDKQLKVLESGVDILIGTTGRLIDYTKQNHVNLGAIQVVVLDEADRMYDLGFIKDIRWL  182

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVVV  446
              ++P  T        ++ SATL S+ V++L+ + M+   +V+++ E      +   +  
Sbjct  183  FRRMPAAT----ERLNMLFSATL-SYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFY  237

Query  447  PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM  506
            P N +  RL + L                                         I+E   
Sbjct  238  PSNEEKMRLLQTL-----------------------------------------IEEEWP  256

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
            D+AIIF  TK  C+++  +    G              L GD    +R + L+ F +GD+
Sbjct  257  DRAIIFANTKHRCEDIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGDL  307

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
              L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E    
Sbjct  308  DILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN  367

Query  627  WYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
               + +  G     ++   D   +      +L
Sbjct  368  LPAIETYIGHSIPVSKYNPDALLSELPPPKRL  399


 Score = 99.0 bits (245),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 60/352 (17%), Positives = 117/352 (33%), Gaps = 58/352 (16%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P + QA+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPVVVQALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +        E ++         +   +  +  +                +  + E  G +
Sbjct  71   LLSHPAA--ENRQVNQPRALIMAPTRELAVQIH--------------SDAEPLAEATGIK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT        G       +   N G
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT-------GRLIDYTKQNHVNLG  157

Query  184  EEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFEIPPHMKNQ--ALFPACVLKNAELKF  240
                    I   + +D+    +     KD+   F   P    +   LF A  L     + 
Sbjct  158  A-------IQVVV-LDEADRMYDLGFIKDIRWLFRRMPAATERLNMLFSAT-LSYRVREL  208

Query  241  NFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSREL  298
             F +    ++   +            +    +    ++ QT      P +A+I   ++  
Sbjct  209  AFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK--  266

Query  299  AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                 +  +    ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -----HRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|P60843|IF4A1_MOUSE Eukaryotic initiation factor 4A-I OS=Mus 
musculus OX=10090 GN=Eif4a1 PE=1 SV=1
Length=406

 Score = 295 bits (756),  Expect = 7e-92, Method: Composition-based stats.
 Identities = 114/428 (27%), Positives = 187/428 (44%), Gaps = 74/428 (17%)

Query  228  FPACVLKNAELK--FNFGEEEFK-------FPPKDGFVALSKAPDGYIVKSQHSGNAQVT  278
            F    L  + L+  + +G E+          P   G+  +++A  G   K+     + + 
Sbjct  34   FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSG-TGKTATFAISILQ  92

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            Q +    A +AL++ P+RELA+Q    +     Y+          IGG   R ++  L+ 
Sbjct  93   QIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGAS---CHACIGGTNVRAEVQKLQM  149

Query  339  G-VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD  397
                I+VGTPGR+ D+++   L+   ++  VLDEAD +LS+G+ D I  +  ++      
Sbjct  150  EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKL------  203

Query  398  GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWE  457
                QV++ SAT+ S DV ++++K M  P  + +K E+   + +    + V  +  +L  
Sbjct  204  NSNTQVVLLSATMPS-DVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKL--  260

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
                                              L   Y    I      QA+IF  T+ 
Sbjct  261  --------------------------------DTLCDLYETLTIT-----QAVIFINTRR  283

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
              D L +               F+   +HGD    ER   +  F+ G  R LI TD+ AR
Sbjct  284  KVDWLTEKM---------HARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLAR  334

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
            GID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI++V  E ++    +     + 
Sbjct  335  GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI-----ET  389

Query  638  CYNTRLKE  645
             YNT ++E
Sbjct  390  FYNTSIEE  397


 Score = 96.0 bits (237),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 52/131 (40%), Gaps = 3/131 (2%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F +M +   + + +    +  P+ IQ  +I   + G DV+  A++G+GKT  F+I +
Sbjct  31   VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISI  90

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI---GSDGLCCQSREVK  117
            +Q +   LK  Q      T             +  Y   S  A     +     Q  +++
Sbjct  91   LQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQME  150

Query  118  EWHGCRATKGL  128
              H    T G 
Sbjct  151  APHIIVGTPGR  161


>sp|P60842|IF4A1_HUMAN Eukaryotic initiation factor 4A-I OS=Homo 
sapiens OX=9606 GN=EIF4A1 PE=1 SV=1
Length=406

 Score = 295 bits (756),  Expect = 7e-92, Method: Composition-based stats.
 Identities = 114/428 (27%), Positives = 187/428 (44%), Gaps = 74/428 (17%)

Query  228  FPACVLKNAELK--FNFGEEEFK-------FPPKDGFVALSKAPDGYIVKSQHSGNAQVT  278
            F    L  + L+  + +G E+          P   G+  +++A  G   K+     + + 
Sbjct  34   FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSG-TGKTATFAISILQ  92

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            Q +    A +AL++ P+RELA+Q    +     Y+          IGG   R ++  L+ 
Sbjct  93   QIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGAS---CHACIGGTNVRAEVQKLQM  149

Query  339  G-VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD  397
                I+VGTPGR+ D+++   L+   ++  VLDEAD +LS+G+ D I  +  ++      
Sbjct  150  EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKL------  203

Query  398  GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWE  457
                QV++ SAT+ S DV ++++K M  P  + +K E+   + +    + V  +  +L  
Sbjct  204  NSNTQVVLLSATMPS-DVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKL--  260

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
                                              L   Y    I      QA+IF  T+ 
Sbjct  261  --------------------------------DTLCDLYETLTIT-----QAVIFINTRR  283

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
              D L +               F+   +HGD    ER   +  F+ G  R LI TD+ AR
Sbjct  284  KVDWLTEKM---------HARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLAR  334

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
            GID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI++V  E ++    +     + 
Sbjct  335  GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI-----ET  389

Query  638  CYNTRLKE  645
             YNT ++E
Sbjct  390  FYNTSIEE  397


 Score = 96.0 bits (237),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 52/131 (40%), Gaps = 3/131 (2%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F +M +   + + +    +  P+ IQ  +I   + G DV+  A++G+GKT  F+I +
Sbjct  31   VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISI  90

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI---GSDGLCCQSREVK  117
            +Q +   LK  Q      T             +  Y   S  A     +     Q  +++
Sbjct  91   LQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQME  150

Query  118  EWHGCRATKGL  128
              H    T G 
Sbjct  151  APHIIVGTPGR  161


>sp|Q3SZ54|IF4A1_BOVIN Eukaryotic initiation factor 4A-I OS=Bos 
taurus OX=9913 GN=EIF4A1 PE=2 SV=1
Length=406

 Score = 295 bits (756),  Expect = 7e-92, Method: Composition-based stats.
 Identities = 114/428 (27%), Positives = 187/428 (44%), Gaps = 74/428 (17%)

Query  228  FPACVLKNAELK--FNFGEEEFK-------FPPKDGFVALSKAPDGYIVKSQHSGNAQVT  278
            F    L  + L+  + +G E+          P   G+  +++A  G   K+     + + 
Sbjct  34   FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSG-TGKTATFAISILQ  92

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            Q +    A +AL++ P+RELA+Q    +     Y+          IGG   R ++  L+ 
Sbjct  93   QIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGAS---CHACIGGTNVRAEVQKLQM  149

Query  339  G-VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD  397
                I+VGTPGR+ D+++   L+   ++  VLDEAD +LS+G+ D I  +  ++      
Sbjct  150  EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKL------  203

Query  398  GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWE  457
                QV++ SAT+ S DV ++++K M  P  + +K E+   + +    + V  +  +L  
Sbjct  204  NSNTQVVLLSATMPS-DVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKL--  260

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
                                              L   Y    I      QA+IF  T+ 
Sbjct  261  --------------------------------DTLCDLYETLTIT-----QAVIFINTRR  283

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
              D L +               F+   +HGD    ER   +  F+ G  R LI TD+ AR
Sbjct  284  KVDWLTEKM---------HARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLAR  334

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
            GID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI++V  E ++    +     + 
Sbjct  335  GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI-----ET  389

Query  638  CYNTRLKE  645
             YNT ++E
Sbjct  390  FYNTSIEE  397


 Score = 96.0 bits (237),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 52/131 (40%), Gaps = 3/131 (2%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F +M +   + + +    +  P+ IQ  +I   + G DV+  A++G+GKT  F+I +
Sbjct  31   VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISI  90

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI---GSDGLCCQSREVK  117
            +Q +   LK  Q      T             +  Y   S  A     +     Q  +++
Sbjct  91   LQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQME  150

Query  118  EWHGCRATKGL  128
              H    T G 
Sbjct  151  APHIIVGTPGR  161


>sp|Q2NQB2|RHLB_SODGM ATP-dependent RNA helicase RhlB OS=Sodalis 
glossinidius (strain morsitans) OX=343509 GN=rhlB PE=3 SV=1
Length=415

 Score = 296 bits (757),  Expect = 7e-92, Method: Composition-based stats.
 Identities = 109/378 (29%), Positives = 165/378 (44%), Gaps = 59/378 (16%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P+ALI+ P+RELA Q  ++ +   +      L+  L  GG     QL VLE GVDI+V
Sbjct  83   NQPRALIMAPTRELAVQIHSDAEPLAQ---ATGLKMGLAYGGDGYDKQLKVLEAGVDILV  139

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GT GRL D      +N+S ++ +VLDEAD +   G+   I  +  ++P           +
Sbjct  140  GTTGRLIDYTKQNYVNMSAIQVVVLDEADRMFDLGFIKDIRWLFRRMPAAAG----RLNM  195

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVVVPVNPKTDRLWERLGKSH  463
            + SATL S+ V++L+ + M+   +V+++        +   +  P N +  RL + L    
Sbjct  196  LFSATL-SYRVRELAFEHMNNAEYVEVEPLQKTGHRIQEELFYPSNEEKMRLLQTL----  250

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                 I+E   D+ IIF  TK  C+++ 
Sbjct  251  -------------------------------------IEEEWPDRCIIFANTKHRCEDIW  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +    G              L GD     R + LE+F +G +  L+ TDVAARG+ I  
Sbjct  274  GHLAADG---------HRVGLLTGDVSQKRRLRILEKFTQGALDILVATDVAARGLHIPS  324

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRL  643
            V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E       + S  G     ++ 
Sbjct  325  VTHVFNYDLPDDCEDYVHRIGRTGRAGESGCSISLACEEYALNLTAIESYIGHQIPVSKY  384

Query  644  KEDGGCTIWYNEMQLLSE  661
              D   T      +L   
Sbjct  385  NSDALLTDLPAPKRLTRR  402


 Score = 102 bits (254),  Expect = 7e-22, Method: Composition-based stats.
 Identities = 55/354 (16%), Positives = 114/354 (32%), Gaps = 58/354 (16%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              FS+  + P I + ++   +   T IQA ++P  L G DV   A+TG+GKT AF     
Sbjct  9    KKFSDFALYPPIVEVLDSKGFNNCTPIQALTLPTTLAGKDVAGQAQTGTGKTLAFLTATF  68

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHG  121
              +        EG++         +   +  +  +                +  + +  G
Sbjct  69   HHLLTHPAA--EGRQTNQPRALIMAPTRELAVQIH--------------SDAEPLAQATG  112

Query  122  CRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDN  181
             +         +  ++   + G+           + +GT            +  +    N
Sbjct  113  LKMGLAYGGDGYDKQLKVLEAGV----------DILVGTT----------GRLIDYTKQN  152

Query  182  YGEEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFEIPPHMKNQ--ALFPACVLKNAEL  238
            Y     +   +     +D+    F     KD+   F   P    +   LF A  L     
Sbjct  153  YVNMSAIQVVV-----LDEADRMFDLGFIKDIRWLFRRMPAAAGRLNMLFSAT-LSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F      ++   +            +    +    ++ QT      P + +I   ++
Sbjct  207  ELAFEHMNNAEYVEVEPLQKTGHRIQEELFYPSNEEKMRLLQTLIEEEWPDRCIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                   +  +    ++     R  L+ G V+ + +L +LE      +DI+V T
Sbjct  267  -------HRCEDIWGHLAADGHRVGLLTGDVSQKRRLRILEKFTQGALDILVAT  313


>sp|A8G828|RHLB_SERP5 ATP-dependent RNA helicase RhlB OS=Serratia 
proteamaculans (strain 568) OX=399741 GN=rhlB PE=3 SV=1
Length=428

 Score = 296 bits (758),  Expect = 7e-92, Method: Composition-based stats.
 Identities = 110/407 (27%), Positives = 176/407 (43%), Gaps = 63/407 (15%)

Query  257  ALSKAPDGYIVKSQHSGNAQVTQTKFLP----NAPKALIVEPSRELAEQTLNNIKQFKKY  312
              ++   G  +    S    +           N P+ALI+ P+RELA Q  ++ +   + 
Sbjct  51   GQAQTGTGKTLAFLTSTFHYLLSHPAKQDRKINQPRALIMAPTRELAVQIHSDAEALSQ-  109

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
              +  L+  L  GG     QL VLE+GVDI+VGT GRL D      ++L  ++ +VLDEA
Sbjct  110  --STGLKMGLAYGGDGYDKQLKVLESGVDILVGTTGRLIDYAKQNYIDLGAIQVVVLDEA  167

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D +   G+   I  +  ++P V     +   ++ SATL S+ V++L+ + M+   +V+++
Sbjct  168  DRMYDLGFIKDIRWLFRRMPAV----DQRLNMLFSATL-SYRVRELAFEQMNNAEYVEVE  222

Query  433  GEDSVPDTVH-HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
             E      +   +  P N +  RL + L                                
Sbjct  223  PEQKTGHRIKEELFYPSNEEKMRLLQTL--------------------------------  250

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
                     I+E   D+ IIF  TK  C+++  +    G              L GD   
Sbjct  251  ---------IEEEWPDRCIIFANTKHRCEDVWGHLAADG---------HRVGLLTGDVAQ  292

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
             +R + L+ F KG++  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA  
Sbjct  293  KKRLRILDDFTKGNLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGE  352

Query  612  MGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
             G +ISL   E       + +  G     ++   D   +      +L
Sbjct  353  SGHSISLACEEYALNLPAIETYTGHSIPVSKYNSDALLSDLPAPKRL  399


 Score = 105 bits (262),  Expect = 8e-23, Method: Composition-based stats.
 Identities = 56/352 (16%), Positives = 120/352 (34%), Gaps = 58/352 (16%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P + +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPLVLEALEKKGFQHCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLTSTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +      Q   +K         +   +  +  +                +  + +  G +
Sbjct  71   LLSHPAKQD--RKINQPRALIMAPTRELAVQIH--------------SDAEALSQSTGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT      +         + + + G
Sbjct  115  MGLAYGGDGYDKQLKVLESGV----------DILVGTTGRLIDYA-------KQNYIDLG  157

Query  184  EEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFEIPPHMKNQ--ALFPACVLKNAELKF  240
                    I   + +D+    +     KD+   F   P +  +   LF A  L     + 
Sbjct  158  A-------IQVVV-LDEADRMYDLGFIKDIRWLFRRMPAVDQRLNMLFSAT-LSYRVREL  208

Query  241  NFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSREL  298
             F +    ++   +            +    +    ++ QT      P + +I   ++  
Sbjct  209  AFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRCIIFANTK--  266

Query  299  AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                 +  +    ++     R  L+ G VA + +L +L++     +DI+V T
Sbjct  267  -----HRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGNLDILVAT  313


>sp|Q8XAT4|RHLB_ECO57 ATP-dependent RNA helicase RhlB OS=Escherichia 
coli O157:H7 OX=83334 GN=rhlB PE=3 SV=3
Length=421

 Score = 296 bits (758),  Expect = 7e-92, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 184/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +       ++   L                    ++   G  +   
Sbjct  13   DFALHPKVVEALEKKGFHNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQ----TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +           N P+ALI+ P+RELA Q   + +      +   L+  L  GG
Sbjct  65   TSTFHCLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLA---EATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +++++ E      +   + 
Sbjct  182  LFRRMPPAN----QRLNMLFSATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+ +  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEEIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGANGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + +  G     ++   D   T     ++L
Sbjct  367  NLPAIETYIGHSIPVSKYNPDALMTDLPKPLRL  399


 Score = 98.3 bits (243),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 56/354 (16%), Positives = 120/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHC  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + E  G +
Sbjct  71   LLSHPAIAD--RKVNQPRALIMAPTRELAVQIH--------------ADAEPLAEATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPANQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  ++   ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|Q329V8|RHLB_SHIDS ATP-dependent RNA helicase RhlB OS=Shigella 
dysenteriae serotype 1 (strain Sd197) OX=300267 GN=rhlB 
PE=3 SV=1
Length=421

 Score = 296 bits (757),  Expect = 7e-92, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 184/453 (41%), Gaps = 71/453 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L  ++   ++ +       ++   L                    ++   G  +   
Sbjct  13   DFSLHPKVVEALEKKGFHNCTPIQALALPLTLA--------GRDVAGQAQTGTGKTMAFL  64

Query  271  HSGNAQVTQ----TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S    +           N P+ALI+ P+RELA Q   + +      +   L+  L  GG
Sbjct  65   TSMFHYLLSHPAIADRKVNKPRALIMAPTRELAVQIHADAEPLA---EATGLKLGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P       +   ++ SATL S+ V++L+ + M+   +++++ E      +   + 
Sbjct  182  LFRRMPPAN----QRLNMLFSATL-SYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N +  RL + L                                         I+E  
Sbjct  237  YPSNEEKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AIIF  TK  C+ +  +    G              L GD    +R + L+ F +GD
Sbjct  256  PDRAIIFANTKHRCEEIWGHLAADG---------HRVGLLTGDVAQKKRLRILDEFTRGD  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   E   
Sbjct  307  LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
                + +  G     ++   D   T     ++L
Sbjct  367  NLPAIETYIGHSIPVSKYNPDALMTDLPKPLRL  399


 Score = 101 bits (251),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 56/354 (16%), Positives = 121/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P++ +A+E+  +   T IQA ++PL L G DV   A+TG+GKT AF   +   
Sbjct  11   FSDFSLHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSMFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +          +K         +   +  +  +                +  + E  G +
Sbjct  71   LLSHPAIAD--RKVNKPRALIMAPTRELAVQIH--------------ADAEPLAEATGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTT---------------GRLIDYA  149

Query  184  EE--FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAF-EIPPHMKNQALFPACVLKNAEL  238
            ++    +       LD       + F K+ + L   F  +PP  +   +  +  L     
Sbjct  150  KQNHINLGAIQVVVLDEADRMYDLGFIKDIRWL---FRRMPPANQRLNMLFSATLSYRVR  206

Query  239  KFNFGEE-EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
            +  F +    ++   +            +    +    ++ QT      P +A+I   ++
Sbjct  207  ELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGT  346
                   +  ++   ++     R  L+ G VA + +L +L       +DI+V T
Sbjct  267  -------HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVAT  313


>sp|P09052|VASA1_DROME ATP-dependent RNA helicase vasa OS=Drosophila 
melanogaster OX=7227 GN=vas PE=1 SV=3
Length=661

 Score = 303 bits (777),  Expect = 8e-92, Method: Composition-based stats.
 Identities = 97/381 (25%), Positives = 160/381 (42%), Gaps = 60/381 (16%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQT--KFLPNAPKALIVEPSRELAEQTLN  304
                     +A ++   G          +++ +   +     P+ +IV P+RELA Q  N
Sbjct  277  PVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFN  336

Query  305  NIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQV  364
              ++F        L+  ++ GG + R Q   +  G  +V+ TPGRL D V    +     
Sbjct  337  EARKFA---FESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDT  393

Query  365  RFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH  424
            RF+VLDEAD +L  G+S+ + R+   +          Q ++ SAT    ++++++ + + 
Sbjct  394  RFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEH----QTLMFSATFP-EEIQRMAGEFLK  448

Query  425  FPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEM  484
               +V +         V   +  VN    R                              
Sbjct  449  NYVFVAIGIVGGACSDVKQTIYEVNKYAKR------------------------------  478

Query  485  WSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC  544
             S+ I+IL            + D  I+F  TK   D L  +  ++         +F    
Sbjct  479  -SKLIEILS----------EQADGTIVFVETKRGADFLASFLSEK---------EFPTTS  518

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            +HGDR   +R+Q L  FK G ++ LI T VA+RG+DI  + +VIN  +P +  +YVHRIG
Sbjct  519  IHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIG  578

Query  605  RVGRAERMGLAISLVATEKEK  625
            R GR    G A S    EK++
Sbjct  579  RTGRVGNNGRATSFFDPEKDR  599


 Score = 103 bits (257),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 49/103 (48%), Gaps = 4/103 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F+   +   I   V +  + +PT IQ  SIP+I  G D++  A+TGSGKT AF +P+
Sbjct  244  IQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPI  303

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
            +  + E   + + G+          S   +  +  ++    FA
Sbjct  304  LSKLLEDPHELELGR----PQVVIVSPTRELAIQIFNEARKFA  342


>sp|Q887N8|RHLB_PSESM ATP-dependent RNA helicase RhlB OS=Pseudomonas 
syringae pv. tomato (strain ATCC BAA-871 / DC3000) OX=223283 
GN=rhlB PE=3 SV=1
Length=397

 Score = 295 bits (755),  Expect = 9e-92, Method: Composition-based stats.
 Identities = 114/434 (26%), Positives = 181/434 (42%), Gaps = 70/434 (16%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
              D  LA E+   +++   FP C           G   F    KD  +  ++   G    
Sbjct  10   FHDFNLAPELMHAIQDLG-FPYCT------PIQAGVLGFTLKGKDA-IGRAQTGTGKTAA  61

Query  269  SQHSGNAQVTQTKF----LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
               S   Q+TQT          P+ALI+ P+REL  Q   +     KY +   L  +  +
Sbjct  62   FLISIIEQLTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTN---LNVMTFV  118

Query  325  GGVAARDQLSVLE-NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDF  383
            GG+    QL  LE    DI+V TPGRL D    G+++L  V  +VLDEAD +L  G+   
Sbjct  119  GGMDFDKQLKQLEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQ  178

Query  384  INRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHH  443
            + ++  Q P         Q ++ SAT  + DV  L+++    P+ V+++  +   D V  
Sbjct  179  VRQIIRQTPH----KGERQTLLFSATF-TEDVMNLAKQWTTDPSIVEIESLNVASDNVEQ  233

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
             +  V                                            K +     + +
Sbjct  234  HIYAVAGAD----------------------------------------KYKLLYNLVTD  253

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
            +  ++ ++F   K +   +E+  ++ G          +   L GD   H+R + LE F++
Sbjct  254  NGWERVMVFANRKDEVRRIEERLVRDG---------VNAAQLSGDVPQHKRIKTLEGFRE  304

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
            G +R L+ TDVA RGI I G+ +VIN TLP+   +YVHRIGR GRA   G++IS    + 
Sbjct  305  GKIRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDD  364

Query  624  EKVWYHVCSSRGKG  637
                  +    G+ 
Sbjct  365  SYQLPAIEEKLGRK  378


 Score = 90.6 bits (223),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 43/94 (46%), Gaps = 2/94 (2%)

Query  2   AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             F +  + PE+  A++++ +   T IQA  +   L G D +  A+TG+GKT AF I +I
Sbjct  8   TRFHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISII  67

Query  62  QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNP  95
           + + +T    +  +          +   +  +  
Sbjct  68  EQLTQTPPPAE--RYMGEPRALIIAPTRELVVQI  99


>sp|Q5E8U5|RHLB_ALIF1 ATP-dependent RNA helicase RhlB OS=Aliivibrio 
fischeri (strain ATCC 700601 / ES114) OX=312309 GN=rhlB 
PE=3 SV=2
Length=432

 Score = 296 bits (758),  Expect = 9e-92, Method: Composition-based stats.
 Identities = 119/491 (24%), Positives = 195/491 (40%), Gaps = 79/491 (16%)

Query  208  NGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGF---VALSKAPDG  264
            N  DLGL  ++   +  +       ++   L      ++     + G    +A   A   
Sbjct  10   NFADLGLQPQVIDGLNAKGFIKCTPIQAKALPVLLAGQDIAGQAQTGTGKTLAFLTATFN  69

Query  265  YIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
            +++ +      ++TQ       P+A+I+ P+RELA Q  N+ +     I +  L+  L  
Sbjct  70   HLLTTPAPEGRKITQ-------PRAIIMAPTRELAIQIFNDAESL---IASTGLKAALAY  119

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG     Q  V+E GVDI++GT GR+ D    G ++   ++ +VLDEAD +   G+   I
Sbjct  120  GGERYEKQQQVIEQGVDILIGTTGRIIDFYKQGHIDFKMIQAVVLDEADRMFDLGFIKDI  179

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-H  443
              +  ++P  T        ++ SATL S+ V++L+ + M  P  V ++ E      +   
Sbjct  180  RFIFRRMPAPT----ERLNMLFSATL-SYRVQELAFEHMQEPEHVVVEPEQKTGHRIKEE  234

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
            +  P N     L + L                                         I+E
Sbjct  235  LFYPSNDHKMALLQTL-----------------------------------------IEE  253

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
               D+AIIF  TK  C+++  +             +     L GD    +R++ LE F +
Sbjct  254  EWPDRAIIFANTKHKCESVWGHL---------AADKHRVGLLTGDVPQKKRERILEEFTQ  304

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
            G+V  L+ TDVAARG+ I  V +V N  LP+E ++YVHRIGR GRA   G +IS    E 
Sbjct  305  GNVDILVATDVAARGLHIPQVTHVFNFDLPNEAEDYVHRIGRTGRAGASGNSISFACEEY  364

Query  624  EKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDE  683
                  +              E       Y+   LL ++   L       +         
Sbjct  365  AINLPAIEE----------YIEHSIPQSDYDASALLEDLPAPLRLQRRPQQNRRNNNGQR  414

Query  684  FDGKVTYGQKR  694
              G   + + R
Sbjct  415  QGGNRKHTRPR  425


 Score = 108 bits (270),  Expect = 7e-24, Method: Composition-based stats.
 Identities = 57/351 (16%), Positives = 119/351 (34%), Gaps = 56/351 (16%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+++G+ P++   +    ++  T IQA+++P++L G D+   A+TG+GKT AF       
Sbjct  11   FADLGLQPQVIDGLNAKGFIKCTPIQAKALPVLLAGQDIAGQAQTGTGKTLAFLTATFNH  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +  T     EG+K         +   +  +  ++               +  +    G +
Sbjct  71   LLTTPAP--EGRKITQPRAIIMAPTRELAIQIFN--------------DAESLIASTGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
            A       ++  +    +QG+           + +GT        G     + +   ++ 
Sbjct  115  AALAYGGERYEKQQQVIEQGV----------DILIGTT-------GRIIDFYKQGHIDF-  156

Query  184  EEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFE---IPPHMKNQALFPACVLKNAELK  239
            +           + +D+    F     KD+   F     P    N         +  EL 
Sbjct  157  KMIQA-------VVLDEADRMFDLGFIKDIRFIFRRMPAPTERLNMLFSATLSYRVQELA  209

Query  240  FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELA  299
            F   +E      +       +  +     S     A +          +A+I   ++   
Sbjct  210  FEHMQEPEHVVVEPEQKTGHRIKEELFYPSNDHKMALLQTLIEEEWPDRAIIFANTK---  266

Query  300  EQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                +  +    ++   K R  L+ G V  + +  +LE      VDI+V T
Sbjct  267  ----HKCESVWGHLAADKHRVGLLTGDVPQKKRERILEEFTQGNVDILVAT  313


>sp|Q02748|IF4A_DROME Eukaryotic initiation factor 4A OS=Drosophila 
melanogaster OX=7227 GN=eIF4A PE=1 SV=3
Length=403

 Score = 295 bits (755),  Expect = 1e-91, Method: Composition-based stats.
 Identities = 117/438 (27%), Positives = 191/438 (44%), Gaps = 74/438 (17%)

Query  208  NGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIV  267
            N  D+ L  E+   +          ++   +           P   G   +++A  G   
Sbjct  31   NFDDMNLREELLRGIYGYGFEKPSAIQQRAI----------IPCVRGRDVIAQAQSG-TG  79

Query  268  KSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
            K+     A + Q        +ALI+ P+RELA Q    +    +Y+   K+     IGG 
Sbjct  80   KTATFSIAILQQIDTSIRECQALILAPTRELATQIQRVVMALGEYM---KVHSHACIGGT  136

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM  387
              R+   +LE+G  +VVGTPGR+ D+++   L    ++  VLDEAD +LS+G+ D I  +
Sbjct  137  NVREDARILESGCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDV  196

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
               +P        +QVI+ SAT+   DV ++S   M  P  + +K E+   + +    V 
Sbjct  197  FKMLP------PDVQVILLSATMPP-DVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVN  249

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
            V  +  +L                                    L   Y   +I      
Sbjct  250  VKQENWKL----------------------------------GTLCDLYDTLSIT-----  270

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
            Q++IFC T+   D L Q             H F+   +HGD +  +R+  +++F+ G  R
Sbjct  271  QSVIFCNTRRKVDQLTQEM---------SIHNFTVSAMHGDMEQRDREVIMKQFRSGSSR  321

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             LI TD+ ARGID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ +  +  ++ 
Sbjct  322  VLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRIL  381

Query  628  YHVCSSRGKGCYNTRLKE  645
              +     +  Y+T ++E
Sbjct  382  KDI-----EQFYHTTIEE  394


 Score = 97.1 bits (240),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 29/127 (23%), Positives = 56/127 (44%), Gaps = 2/127 (2%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +M +  E+ + +    +  P+ IQ  +I   + G DV+  A++G+GKT  FSI ++Q 
Sbjct  32   FDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQ  91

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA-IGSDGLCCQSREVKEW-HG  121
            +  ++++ Q      T             +  Y +  + A IG   +   +R ++   H 
Sbjct  92   IDTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILESGCHV  151

Query  122  CRATKGL  128
               T G 
Sbjct  152  VVGTPGR  158


>sp|P44586|DEAD_HAEIN ATP-dependent RNA helicase DeaD OS=Haemophilus 
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) 
OX=71421 GN=deaD PE=3 SV=1
Length=613

 Score = 302 bits (772),  Expect = 1e-91, Method: Composition-based stats.
 Identities = 110/438 (25%), Positives = 185/438 (42%), Gaps = 69/438 (16%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
              DLGL   I   + +        ++ + +              +  + +++   G    
Sbjct  7    FNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLN--------GNDVLGMAQTGSGKTAA  58

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
                    + Q       P+ L++ P+RELA Q  +  + F KY      R + + GG  
Sbjct  59   FAL---PLLAQIDPSEKHPQMLVMAPTRELAIQVADACELFVKYAQGT--RIVTLYGGQR  113

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
               QL  L+ G  +VVGTPGR+ D +  G LNLS++RF+VLDEAD +L  G+ D +  + 
Sbjct  114  YDIQLRALKQGAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVM  173

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
             ++P      +  Q  + SAT+    +++++++ M+ P  V +K  +     +      V
Sbjct  174  AELP------ENHQTALFSATMPEP-IRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYV  226

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
            +                                         + K E  +R ++    D 
Sbjct  227  H----------------------------------------GVRKNEALLRFLEVEDFDA  246

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
            AIIF RTK    ++ +   + G         F    L+GD     R+Q L+R + G +  
Sbjct  247  AIIFARTKTGTLDITELLEKNG---------FRSAALNGDMTQQLREQTLDRLRNGSLDI  297

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            ++ TDVAARGIDI  +  V+N  +P + ++YVHRIGR GRA R G A+  V   + ++  
Sbjct  298  VVATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLR  357

Query  629  HVCSSRGKGCYNTRLKED  646
            ++     KG     L   
Sbjct  358  NIEHLMKKGINEVELPNH  375


 Score = 106 bits (265),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 0/125 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F+++G+   I +AV ++ +  P+ IQ   IP +L G DVL  A+TGSGKT AF++P++ 
Sbjct  6    TFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLA  65

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGC  122
             +  + K  Q      T                Y +G+       G     +      G 
Sbjct  66   QIDPSEKHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALKQGA  125

Query  123  RATKG  127
            +   G
Sbjct  126  QVVVG  130


>sp|Q0UY62|DBP3_PHANO ATP-dependent RNA helicase DBP3 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=DBP3 PE=3 SV=1
Length=592

 Score = 301 bits (770),  Expect = 1e-91, Method: Composition-based stats.
 Identities = 118/482 (24%), Positives = 188/482 (39%), Gaps = 85/482 (18%)

Query  204  KFSKNG---KDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFP-------PKD  253
              +KN    +D   A      + N    P            F                  
Sbjct  157  FLTKNTMTIEDPKPAARKLRPIVNFKYLPVTDESQRAPFAGFTAPTPIQAATWPFLLSGR  216

Query  254  GFVALSKAPDGYIVKS-QHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKY  312
              V +++   G  +        A ++  K      KA+IV P+RELA Q  + +      
Sbjct  217  DMVGVAETGSGKTLAFGVPCVRAILSLPKDKRKGIKAVIVSPTRELAVQIYDQLVALAHP  276

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
                 L  + + GGV    Q++       IVV TPGRL+DL+  G  +LS   ++VLDEA
Sbjct  277  AG---LSVVCVYGGVPKDPQVAACRK-AHIVVATPGRLNDLIGDGSADLSNADYVVLDEA  332

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D +L +G+ + I ++ +Q P      K+ Q ++ +AT     V+ L+   M  P  + + 
Sbjct  333  DRMLDKGFEEPIRQIISQTP------KKRQTLMFTATWPP-SVRDLASTFMVSPVRITIG  385

Query  433  GEDS----VPDTVHHVVVPVNP--KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWS  486
               S        +  +V  ++P  K  RL + L +                         
Sbjct  386  DNQSGELRANVRIKQLVEVLDPHAKEQRLLQLLKQ-------------------------  420

Query  487  EAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLH  546
                            ++K D+ ++FC  K +   +E +   +G         F    +H
Sbjct  421  ------------YQSGKNKDDRILVFCLYKKEAMRIENFIRMKG---------FRVGGIH  459

Query  547  GDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRV  606
            GD    +R  +L  FK+G V  L+ TDVAARG+DI  V  VINVT P   ++YVHRIGR 
Sbjct  460  GDLSQEKRSASLAAFKEGQVPLLVATDVAARGLDIPAVKLVINVTFPLTAEDYVHRIGRT  519

Query  607  GRAERMGLAISLVATEKEKVWYHVCSSRG-----------KGCYNTRLKEDGGCTIWYNE  655
            GRA + GLAI+      + +   + +              K     + KE G    +Y +
Sbjct  520  GRAGKEGLAITFFTEHDKGLSGSLINVLKAANQEVPEELLKFGTTVKKKEHGAYGAFYKD  579

Query  656  MQ  657
            + 
Sbjct  580  VD  581


 Score = 101 bits (252),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 39/141 (28%), Positives = 61/141 (43%), Gaps = 16/141 (11%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F  + V  E  +A     +  PT IQA + P +L G D++  AETGSGKT AF +P 
Sbjct  178  IVNFKYLPVTDESQRA-PFAGFTAPTPIQAATWPFLLSGRDMVGVAETGSGKTLAFGVPC  236

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA-IGSDGLCC--------  111
            ++ +    KD+++G K         S   +  +  YD+  A A      + C        
Sbjct  237  VRAILSLPKDKRKGIK-----AVIVSPTRELAVQIYDQLVALAHPAGLSVVCVYGGVPKD  291

Query  112  -QSREVKEWHGCRATKGLMKG  131
             Q    ++ H   AT G +  
Sbjct  292  PQVAACRKAHIVVATPGRLND  312


>sp|P0CQ70|IF4A_CRYNJ ATP-dependent RNA helicase eIF4A OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=TIF1 PE=3 SV=1
Length=401

 Score = 295 bits (754),  Expect = 1e-91, Method: Composition-based stats.
 Identities = 115/426 (27%), Positives = 185/426 (43%), Gaps = 71/426 (17%)

Query  228  FPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN  285
            F    LK   L+  + +G E      +   + +    D        +G         L  
Sbjct  30   FDDMKLKGELLRGIYAYGFERPSAIQQRAIMPIVTGRDCIAQAQSGTGKTATFSVSILQR  89

Query  286  ------APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
                    +AL++ P+RELA+Q    +     Y++   +     +GG A R+ ++ L  G
Sbjct  90   IDTTVKKTQALVLAPTRELAQQIQKVVIALGDYLN---VDCHACVGGTAVREDIARLNEG  146

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
              IVVGTPGR+ D+++ G L    V    LDEAD +LS G+ + I  +   +P  T    
Sbjct  147  PHIVVGTPGRVFDMINRGALKTEAVMMFCLDEADEMLSTGFKESIYEIFQLLPGET----  202

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              QV++ SAT+   +V  +++K M  P  + +K ++   + +    + V  +  +L    
Sbjct  203  --QVVLLSATMAP-EVLDVTKKFMRDPIRILVKKDELTLEGIRQFYINVEKEEWKL----  255

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
                                               E      +   + QA+IFC T+   
Sbjct  256  -----------------------------------ETLCDLYETVTITQAVIFCSTRRKV  280

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            D L Q    +         QF+   +HGD K  ER+  ++ F+ G  R LI TD+ ARGI
Sbjct  281  DWLTQQLHDR---------QFTVSAMHGDMKQEEREVIMKEFRSGSSRVLITTDLLARGI  331

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCY  639
            D+  V  VIN  LP  K+NY+HRIGR GR  R G+AI+ V+ E + +   +     +  Y
Sbjct  332  DVQQVSLVINYDLPSSKENYIHRIGRGGRFGRKGVAINFVSNEDKNMLEEI-----ETYY  386

Query  640  NTRLKE  645
            NT+++E
Sbjct  387  NTQVEE  392


 Score = 92.5 bits (228),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (57%), Gaps = 0/69 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F +M +  E+ + +    +  P+ IQ  +I  I+ G D +  A++G+GKT  FS+ ++Q 
Sbjct  30  FDDMKLKGELLRGIYAYGFERPSAIQQRAIMPIVTGRDCIAQAQSGTGKTATFSVSILQR  89

Query  64  VYETLKDQQ  72
           +  T+K  Q
Sbjct  90  IDTTVKKTQ  98


>sp|P0CQ71|IF4A_CRYNB ATP-dependent RNA helicase eIF4A OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=TIF1 PE=3 SV=1
Length=401

 Score = 295 bits (754),  Expect = 1e-91, Method: Composition-based stats.
 Identities = 115/426 (27%), Positives = 185/426 (43%), Gaps = 71/426 (17%)

Query  228  FPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN  285
            F    LK   L+  + +G E      +   + +    D        +G         L  
Sbjct  30   FDDMKLKGELLRGIYAYGFERPSAIQQRAIMPIVTGRDCIAQAQSGTGKTATFSVSILQR  89

Query  286  ------APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
                    +AL++ P+RELA+Q    +     Y++   +     +GG A R+ ++ L  G
Sbjct  90   IDTTVKKTQALVLAPTRELAQQIQKVVIALGDYLN---VDCHACVGGTAVREDIARLNEG  146

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
              IVVGTPGR+ D+++ G L    V    LDEAD +LS G+ + I  +   +P  T    
Sbjct  147  PHIVVGTPGRVFDMINRGALKTEAVMMFCLDEADEMLSTGFKESIYEIFQLLPGET----  202

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              QV++ SAT+   +V  +++K M  P  + +K ++   + +    + V  +  +L    
Sbjct  203  --QVVLLSATMAP-EVLDVTKKFMRDPIRILVKKDELTLEGIRQFYINVEKEEWKL----  255

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
                                               E      +   + QA+IFC T+   
Sbjct  256  -----------------------------------ETLCDLYETVTITQAVIFCSTRRKV  280

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            D L Q    +         QF+   +HGD K  ER+  ++ F+ G  R LI TD+ ARGI
Sbjct  281  DWLTQQLHDR---------QFTVSAMHGDMKQEEREVIMKEFRSGSSRVLITTDLLARGI  331

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCY  639
            D+  V  VIN  LP  K+NY+HRIGR GR  R G+AI+ V+ E + +   +     +  Y
Sbjct  332  DVQQVSLVINYDLPSSKENYIHRIGRGGRFGRKGVAINFVSNEDKNMLEEI-----ETYY  386

Query  640  NTRLKE  645
            NT+++E
Sbjct  387  NTQVEE  392


 Score = 92.5 bits (228),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (57%), Gaps = 0/69 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F +M +  E+ + +    +  P+ IQ  +I  I+ G D +  A++G+GKT  FS+ ++Q 
Sbjct  30  FDDMKLKGELLRGIYAYGFERPSAIQQRAIMPIVTGRDCIAQAQSGTGKTATFSVSILQR  89

Query  64  VYETLKDQQ  72
           +  T+K  Q
Sbjct  90  IDTTVKKTQ  98


>sp|A0KEG9|RHLB_AERHH ATP-dependent RNA helicase RhlB OS=Aeromonas 
hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 
/ BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 
9240 / NCTC 8049) OX=380703 GN=rhlB PE=3 SV=1
Length=429

 Score = 295 bits (756),  Expect = 1e-91, Method: Composition-based stats.
 Identities = 116/494 (23%), Positives = 193/494 (39%), Gaps = 80/494 (16%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
            +     +GL  E+   ++++       ++   L                    ++   G 
Sbjct  8    TDKFAQMGLEPEVLAGLESKGFHYCTPIQALSLPL--------LVEGHDLAGQAQTGTGK  59

Query  266  IVKSQHSG-NAQVTQTKFLP---NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLREL  321
             +    +  N  +T     P   N P+A+I+ P+RELA Q  N+ +       +  L+  
Sbjct  60   TLAFLAATFNYLLTHPLTKPRLINQPRAIIMAPTRELAVQIYNDAESMSA---STGLKLG  116

Query  322  LIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYS  381
            L  GG     QL+VLE GVDI++GT GR+ D   +  ++LS ++ +VLDEAD +   G+ 
Sbjct  117  LAYGGEGYDKQLAVLEQGVDILIGTTGRIIDYFKSKVIDLSNIQVVVLDEADRMFDLGFI  176

Query  382  DFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV  441
              I  +  ++P  T        ++ SATL S  V++L+ + M+ P  V ++ E      +
Sbjct  177  KDIRFLFRRMPPAT----ERLSMLFSATL-SLRVQELAYEHMNHPEHVQIEPEQMTGVRI  231

Query  442  HHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI  501
                                                     E         K    +  +
Sbjct  232  K----------------------------------------EELFYPSNEDKMLLLLSLM  251

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
            +E   ++AI+F  TK  C+++  +    G              L GD    +R + LE F
Sbjct  252  EEEWPEKAIVFANTKHVCEDVHAWLENDG---------HRVGLLTGDVPQKKRMKILEDF  302

Query  562  KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT  621
             KG V  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA + G +ISL   
Sbjct  303  TKGTVDILVATDVAARGLHIPDVTHVFNYDLPDDAEDYVHRIGRTGRAGKSGHSISLACE  362

Query  622  EKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPV  681
            +       +                      Y+   LL ++           +P  +   
Sbjct  363  DYAFNLPAIEE----------YIHHPIPVSKYDREALLDDVTAP-KRVFRNRQPVNRNMR  411

Query  682  DEFDGKVTYGQKRA  695
            D   G  +  ++R 
Sbjct  412  DRQGGGNSNNRRRP  425


 Score = 103 bits (256),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 114/352 (32%), Gaps = 58/352 (16%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F++MG+ PE+   +E   +   T IQA S+PL++ G D+   A+TG+GKT AF       
Sbjct  11   FAQMGLEPEVLAGLESKGFHYCTPIQALSLPLLVEGHDLAGQAQTGTGKTLAFLAATFNY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +      +         I    +   +  +  Y+   + +                    
Sbjct  71   LLTHPLTKPRLINQPRAI--IMAPTRELAVQIYNDAESMS--------------------  108

Query  124  ATKGLMKGKHYYEVSCHDQGL-CRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNY  182
            A+ GL  G  Y       +G   ++        + +GT      +     K  +      
Sbjct  109  ASTGLKLGLAY-----GGEGYDKQLAVLEQGVDILIGTTGRIIDY--FKSKVIDLSNIQ-  160

Query  183  GEEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFEIPP---HMKNQALFPACVLKNAEL  238
                         + +D+    F     KD+   F   P      +        L+  EL
Sbjct  161  ------------VVVLDEADRMFDLGFIKDIRFLFRRMPPATERLSMLFSATLSLRVQEL  208

Query  239  KFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSREL  298
             +           +   +   +  +     S       +          KA++   ++  
Sbjct  209  AYEHMNHPEHVQIEPEQMTGVRIKEELFYPSNEDKMLLLLSLMEEEWPEKAIVFANTK--  266

Query  299  AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                 +  +    +++N   R  L+ G V  + ++ +LE+     VDI+V T
Sbjct  267  -----HVCEDVHAWLENDGHRVGLLTGDVPQKKRMKILEDFTKGTVDILVAT  313


>sp|Q75BS4|DHH1_EREGS ATP-dependent RNA helicase DHH1 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DHH1 PE=3 SV=1
Length=484

 Score = 297 bits (761),  Expect = 1e-91, Method: Composition-based stats.
 Identities = 110/487 (23%), Positives = 184/487 (38%), Gaps = 88/487 (18%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             +D  L  E+   +          ++   +                   L++A +G   K
Sbjct  31   FEDFYLRRELLMGIFEAGFERPSPIQEEAIPIALAR----------RDILARAKNG-TGK  79

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
            +       +   K   N  +ALI+ P+RELA QT   ++   K+     +  ++  GG  
Sbjct  80   TAAFVIPTLEIVKPKVNKIQALIMVPTRELALQTSQVVRTLGKHCG---ISCMVTTGGTN  136

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
             RD +  L   V ++VGTPGR+ DL S    +LS+    V+DEAD +LS+ +   + ++ 
Sbjct  137  LRDDIMRLNEPVHVLVGTPGRVLDLASRKVADLSECSLFVMDEADKMLSRDFKSLVEQIL  196

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
            + +PQ        Q ++ SAT     VK+   K ++ P  ++L  E ++   +      V
Sbjct  197  SFLPQ------NHQSLLFSATFP-LTVKEFMVKHLNKPYEINLMDELTLK-GITQYYAFV  248

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
              +                                         K         + +++Q
Sbjct  249  EERQ----------------------------------------KLHCLNTLFSKLQINQ  268

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
            AIIFC +    + L +     G         +SC   H   K  ER +    F++G VR 
Sbjct  269  AIIFCNSTNRVELLAKKITDLG---------YSCYYSHARMKQQERNKVFHEFRQGKVRT  319

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            L+C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR   +GLAI+L+        Y
Sbjct  320  LVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLY  379

Query  629  HVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKV  688
             +    G                      + ++I++ L          +  P+D   G  
Sbjct  380  KIEQELGT-----------------EIAAIPAQIDKSLYVAEDTSAVPVPFPLDTMQGNA  422

Query  689  TYGQKRA  695
               Q+  
Sbjct  423  RAAQQMP  429


 Score = 95.2 bits (235),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 9/92 (10%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F +  +  E+   + E  +  P+ IQ E+IP+ L   D+L  A+ G+GKT AF IP ++
Sbjct  30   TFEDFYLRRELLMGIFEAGFERPSPIQEEAIPIALARRDILARAKNGTGKTAAFVIPTLE  89

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
            IV   +   Q                 +  + 
Sbjct  90   IVKPKVNKIQ---------ALIMVPTRELALQ  112


>sp|P0CQ74|DED1_CRYNJ ATP-dependent RNA helicase ded1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=DED1 PE=3 SV=1
Length=637

 Score = 302 bits (773),  Expect = 1e-91, Method: Composition-based stats.
 Identities = 87/355 (25%), Positives = 144/355 (41%), Gaps = 54/355 (15%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P AL++ P+REL  Q     ++F        +R  ++ GG     Q+  L+ G D++  T
Sbjct  248  PTALVLAPTRELVSQIHEEARKFA---YRSWVRPAVVYGGADIGSQMRALDRGCDLLSAT  304

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL DL+  GK++L+ V++LVLDEAD +L  G+   I R+ ++  +        Q ++ 
Sbjct  305  PGRLVDLIERGKISLANVKYLVLDEADRMLDMGFEPQIRRIVDE--EDMPGVLERQTLMF  362

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT    +++ L+   +    ++ +    S  + +   V  V+ +  R            
Sbjct  363  SATFP-REIQNLARSFLKEYIFLTVGRVGSTSENITQRVEYVDDQDKR------------  409

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                                              + E      ++F  TK   D L  + 
Sbjct  410  ---------------------------SLLLDLLLAEQSGGLILVFVETKRMADTLCDFL  442

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                        + +   +HGDR   ER+  L  FK G    L+ T VAARG+DI  V +
Sbjct  443  C---------SRRHNATSIHGDRTQREREAALYAFKSGRAPILVATAVAARGLDIPNVTH  493

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
            VI   LP++   Y HRIGR GRA  +G + +        +   +     +     
Sbjct  494  VILYDLPNDVAEYTHRIGRTGRAGNVGTSTAFFNRGNTNIGKDLIELLKEANQEV  548


 Score = 92.5 bits (228),  Expect = 4e-18, Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 10/116 (9%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F+   + P + + V+   +  PT +Q  SIP++  G D++  A+TGSGKTG F  P+
Sbjct  159  VTEFTNPPINPVLLENVKYARYATPTPVQKYSIPIVADGRDLMACAQTGSGKTGGFLFPI  218

Query  61   IQIVYETLKDQQE-------GKKGKTTIKTGAS---VLNKWQMNPYDRGSAFAIGS  106
            +  ++               G +    +   A       +     ++    FA  S
Sbjct  219  LSALFTYGPSTPPVEQDTGYGYRRTKKVYPTALVLAPTRELVSQIHEEARKFAYRS  274


>sp|P0CQ75|DED1_CRYNB ATP-dependent RNA helicase ded1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=DED1 PE=3 SV=1
Length=637

 Score = 302 bits (773),  Expect = 1e-91, Method: Composition-based stats.
 Identities = 87/355 (25%), Positives = 144/355 (41%), Gaps = 54/355 (15%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P AL++ P+REL  Q     ++F        +R  ++ GG     Q+  L+ G D++  T
Sbjct  248  PTALVLAPTRELVSQIHEEARKFA---YRSWVRPAVVYGGADIGSQMRALDRGCDLLSAT  304

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL DL+  GK++L+ V++LVLDEAD +L  G+   I R+ ++  +        Q ++ 
Sbjct  305  PGRLVDLIERGKISLANVKYLVLDEADRMLDMGFEPQIRRIVDE--EDMPGVLERQTLMF  362

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT    +++ L+   +    ++ +    S  + +   V  V+ +  R            
Sbjct  363  SATFP-REIQNLARSFLKEYIFLTVGRVGSTSENITQRVEYVDDQDKR------------  409

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                                              + E      ++F  TK   D L  + 
Sbjct  410  ---------------------------SLLLDLLLAEQSGGLILVFVETKRMADTLCDFL  442

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
                        + +   +HGDR   ER+  L  FK G    L+ T VAARG+DI  V +
Sbjct  443  C---------SRRHNATSIHGDRTQREREAALYAFKSGRAPILVATAVAARGLDIPNVTH  493

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
            VI   LP++   Y HRIGR GRA  +G + +        +   +     +     
Sbjct  494  VILYDLPNDVAEYTHRIGRTGRAGNVGTSTAFFNRGNTNIGKDLIELLKEANQEV  548


 Score = 92.5 bits (228),  Expect = 4e-18, Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 10/116 (9%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F+   + P + + V+   +  PT +Q  SIP++  G D++  A+TGSGKTG F  P+
Sbjct  159  VTEFTNPPINPVLLENVKYARYATPTPVQKYSIPIVADGRDLMACAQTGSGKTGGFLFPI  218

Query  61   IQIVYETLKDQQE-------GKKGKTTIKTGAS---VLNKWQMNPYDRGSAFAIGS  106
            +  ++               G +    +   A       +     ++    FA  S
Sbjct  219  LSALFTYGPSTPPVEQDTGYGYRRTKKVYPTALVLAPTRELVSQIHEEARKFAYRS  274


>sp|Q2GQ93|DHH1_CHAGB ATP-dependent RNA helicase DHH1 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=DHH1 PE=3 SV=1
Length=512

 Score = 298 bits (763),  Expect = 2e-91, Method: Composition-based stats.
 Identities = 109/466 (23%), Positives = 178/466 (38%), Gaps = 71/466 (15%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
             + +D GL  ++   +          ++   +               G   L++A +G  
Sbjct  11   LDFEDFGLKRDLLMGIFEAGFEKPSPIQEESIPVALV----------GRDILARAKNG-T  59

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             K+       + +     +  + LI+ P+RELA QT    K   K++    +  ++  GG
Sbjct  60   GKTAAFVIPALEKINPKVSKIQCLILVPTRELAMQTSQVCKTLGKHLG---INVMVTTGG  116

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
               RD +  L++ V IVVGTPGR+ DL      +LS+    ++DEAD LLS  ++  I +
Sbjct  117  TGLRDDIVRLQDPVHIVVGTPGRILDLAGKQVADLSECPMFIMDEADKLLSIEFTPVIEQ  176

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVV  446
            +    P      K  QV++ SAT     VK  S+K M  P  ++L  ++     +     
Sbjct  177  LLRFHP------KDRQVMLFSATFP-ISVKDFSDKNMTSPYEINLM-DELTLRGITQYYA  228

Query  447  PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM  506
             V  K                                         K         + ++
Sbjct  229  YVEEKQ----------------------------------------KVHCLNTLFSKLQI  248

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
            +Q+IIFC +    + L +   + G         +SC   H       R +    F+ G  
Sbjct  249  NQSIIFCNSTNRVELLAKKITELG---------YSCFYSHAKMAQQARNRVFHDFRNGVC  299

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
            R L+C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR   +GLAI+L+  +    
Sbjct  300  RNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLINWDDRFN  359

Query  627  WYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQ  672
             Y++    G          D    ++ N   +   I       I Q
Sbjct  360  LYNIERDLGTEIQPIPQTIDKSLYVYENPESIPRPISNLKPAGIQQ  405


 Score = 102 bits (254),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 9/91 (10%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F + G+  ++   + E  +  P+ IQ ESIP+ L G D+L  A+ G+GKT AF IP ++ 
Sbjct  13  FEDFGLKRDLLMGIFEAGFEKPSPIQEESIPVALVGRDILARAKNGTGKTAAFVIPALEK  72

Query  64  VYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
           +   +   Q                 +  M 
Sbjct  73  INPKVSKIQ---------CLILVPTRELAMQ  94


>sp|Q9C551|RH5_ARATH DEAD-box ATP-dependent RNA helicase 5 OS=Arabidopsis 
thaliana OX=3702 GN=RH5 PE=1 SV=1
Length=537

 Score = 299 bits (765),  Expect = 2e-91, Method: Composition-based stats.
 Identities = 104/395 (26%), Positives = 182/395 (46%), Gaps = 68/395 (17%)

Query  252  KDGFVALSKAPDGYIVKS-QHSGNAQVTQTKFLPNA-----PKALIVEPSRELAEQTLNN  305
                + ++K   G  +     +    + + K +        P  L++ P+RELA Q  + 
Sbjct  151  GRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDV  210

Query  306  IKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVR  365
            +++  +      L+ + + GG +   Q+S + +GVDIV+GTPGRL DL+ +  L LS V 
Sbjct  211  LREAGEPCG---LKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVS  267

Query  366  FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIM-H  424
            F+VLDEAD +L  G+ + +  + +      +  K  Q+++ SAT    DV KL+++ M  
Sbjct  268  FVVLDEADRMLDMGFEEPVRFILS------NTNKVRQMVMFSATWP-LDVHKLAQEFMDP  320

Query  425  FPTWVDLKGEDSVPD-TVHHVVVPVNPKT--DRLWERLGKSHIRTDDVHAKDNTRPGANS  481
             P  V +   D   +  V  ++  ++ +    RL   L K H                  
Sbjct  321  NPIKVIIGSVDLAANHDVMQIIEVLDERARDQRLIALLEKYH------------------  362

Query  482  PEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFS  541
                                 + + ++ ++F   K++ + LE++  Q+G         + 
Sbjct  363  ---------------------KSQKNRVLVFALYKVEAERLERFLQQRG---------WK  392

Query  542  CVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH  601
             V +HG++   ER ++L  FK+G    L+ TDVAARG+DI  V  VIN T P   ++YVH
Sbjct  393  AVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVH  452

Query  602  RIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGK  636
            RIGR GRA + G+A +      + +   + +   +
Sbjct  453  RIGRTGRAGKKGVAHTFFTPLNKGLAGELVNVLRE  487


 Score = 105 bits (261),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 32/146 (22%), Positives = 56/146 (38%), Gaps = 7/146 (5%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F+E  +   +    +   +  P+ IQ+ + P +L G D++  A+TGSGKT AF IP 
Sbjct  115  LKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPA  172

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120
            I  V +  K    G K         S   +  +   D      +   G  C  + +  + 
Sbjct  173  IMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDV-----LREAGEPCGLKSICVYG  227

Query  121  GCRATKGLMKGKHYYEVSCHDQGLCR  146
            G      +   +   ++     G  R
Sbjct  228  GSSKGPQISAIRSGVDIVIGTPGRLR  253


>sp|A1DL85|SUB2_NEOFI ATP-dependent RNA helicase sub2 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=sub2 
PE=3 SV=1
Length=441

 Score = 295 bits (756),  Expect = 2e-91, Method: Composition-based stats.
 Identities = 99/382 (26%), Positives = 161/382 (42%), Gaps = 63/382 (16%)

Query  256  VALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDN  315
              L +A  G + K+       + Q + +P     L++  +RELA Q  N   +F KY+  
Sbjct  97   DVLCQAKSG-LGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYL--  153

Query  316  PKLRELLIIGGVAARDQLSVLENG---VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
            P ++  +  GG   +  + VL N     +IVVGTPGRL+ LV   KL+L  V+  VLDE 
Sbjct  154  PDVKTAVFYGGTPIQKDIEVLSNKESYPNIVVGTPGRLNALVREKKLSLRNVKAFVLDEC  213

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D +L       + R   +I + T   K  QV++ SATL S +++ + +K M  P  V + 
Sbjct  214  DKMLD---QIDMRRDVQEIFRATPADK--QVMMFSATL-SQEIRPICKKFMRNPLEVYVD  267

Query  433  GEDS-VPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
             +       +    + ++                                          
Sbjct  268  DDTKLTLHGLQQYYIKLSESE---------------------------------------  288

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
             K       +   + +Q IIF ++ +  + L++   +           F  + +H     
Sbjct  289  -KNRKLNELLDSLEFNQVIIFVKSTLRANELDKLLRE---------CNFPSIAVHSGVSQ  338

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
             ER +  + FK+ + R  + TDV  RGIDI  +   IN  LP +  +Y+HR+GR GR   
Sbjct  339  EERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGT  398

Query  612  MGLAISLV-ATEKEKVWYHVCS  632
             GL+IS V + E EKV   +  
Sbjct  399  KGLSISFVSSEEDEKVLKEIEK  420


 Score = 71.3 bits (173),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 32/63 (51%), Gaps = 0/63 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F +  +  E+ +A+ +  +  P+++Q   IP  +   DVL  A++G GKT  F +  +
Sbjct  58   TGFRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTL  117

Query  62   QIV  64
              +
Sbjct  118  HQL  120


>sp|Q0D8N0|RH53_ORYSJ DEAD-box ATP-dependent RNA helicase 53 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os07g0143700 PE=2 
SV=2
Length=602

 Score = 300 bits (769),  Expect = 2e-91, Method: Composition-based stats.
 Identities = 108/403 (27%), Positives = 176/403 (44%), Gaps = 65/403 (16%)

Query  251  PKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNA---PKALIVEPSRELAEQTLNNIK  307
                 +  ++   G  +        ++ +      +   P A+I+ P+RELA Q     K
Sbjct  120  QGKDMIGRARTGTGKTLAFGIPIMDRILRHNEKNGSGRNPLAIILAPTRELARQVEKEFK  179

Query  308  QFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFL  367
            +      +  L  L + GGV    Q+  L  GVD+VVGTPGR+ DL+  G LNLS+++F+
Sbjct  180  E------SAPLDSLCVYGGVPISHQMRALNYGVDVVVGTPGRIIDLLRRGVLNLSEIQFV  233

Query  368  VLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPT  427
            VLDEAD +L+ G+ + +  +   +PQ        Q ++ SAT+ S+ ++K++ K +  P 
Sbjct  234  VLDEADQMLAVGFDEDVEVIMENLPQ------NRQSMLFSATMPSW-IRKITSKYLKDPI  286

Query  428  WVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSE  487
             +DL G++                  +L E +    I ++                    
Sbjct  287  IIDLVGDE----------------DQKLPEGISLYSIASEHYG-----------------  313

Query  488  AIKILKGEYAVRAIKEH-KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLH  546
                 K       IKEH    + I+F +TK + D L              G  ++C  LH
Sbjct  314  -----KPSILGPLIKEHANGGKCIVFTQTKREADRLAYAM----------GRSYACQALH  358

Query  547  GDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRV  606
            GD   ++R++ L  F+ G    L+ TDVAARG+DI  V  VI+  LP+  + +VHR GR 
Sbjct  359  GDISQNQRERTLSGFRDGRFNILVATDVAARGLDIPNVDLVIHYELPNTSELFVHRSGRT  418

Query  607  GRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGC  649
             RA + G AI +   ++ +    +    G         E    
Sbjct  419  ARAGKKGSAILIYTNDQARAVRIIEQDIGCKFTELPKIEVADE  461


 Score = 87.5 bits (215),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 53/348 (15%), Positives = 105/348 (30%), Gaps = 60/348 (17%)

Query  7    MGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYE  66
            +G+ P I + +          IQ   +   + G D++  A TG+GKT AF IP++  +  
Sbjct  89   LGISPWIVERLAARGITRLFPIQRAVLDPAMQGKDMIGRARTGTGKTLAFGIPIMDRILR  148

Query  67   TLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATK  126
                 ++   G+  +    +   +            A   D LC        + G   + 
Sbjct  149  H---NEKNGSGRNPLAIILAPTRELARQVEKEFKESAP-LDSLCV-------YGGVPISH  197

Query  127  GLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEF  186
             +    +  +V     G  R+     +  L+L   +  F       +     FD      
Sbjct  198  QMRALNYGVDVVVGTPG--RIIDLLRRGVLNL--SEIQFVVLDEADQMLAVGFD------  247

Query  187  TMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLK-NAELKFNFGEE  245
                                   +D+ +  E  P  +   LF A +     ++   + ++
Sbjct  248  -----------------------EDVEVIMENLPQNRQSMLFSATMPSWIRKITSKYLKD  284

Query  246  EFKFP-PKDGFVALSKAPDGYIVKSQHSGNAQVT--QTKFLPNAPKALIVEPSRELAEQT  302
                    D    L +    Y + S+H G   +     K   N  K ++         QT
Sbjct  285  PIIIDLVGDEDQKLPEGISLYSIASEHYGKPSILGPLIKEHANGGKCIVFT-------QT  337

Query  303  LNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE----NGVDIVVGT  346
                 +    +         + G ++   +   L        +I+V T
Sbjct  338  KREADRLAYAMGRSY-ACQALHGDISQNQRERTLSGFRDGRFNILVAT  384


>sp|A7MXT4|RHLB_VIBC1 ATP-dependent RNA helicase RhlB OS=Vibrio 
campbellii (strain ATCC BAA-1116) OX=2902295 GN=rhlB PE=3 
SV=1
Length=437

 Score = 295 bits (756),  Expect = 2e-91, Method: Composition-based stats.
 Identities = 117/494 (24%), Positives = 197/494 (40%), Gaps = 86/494 (17%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
              DLGL  ++   ++ +       ++   L      ++            ++   G  + 
Sbjct  11   FADLGLKPQVTEGLEKKGFEYCTPIQALALPVLLTGQD--------IAGQAQTGTGKTLA  62

Query  269  SQHSGNAQVTQTKF----LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
               +    +  T       P  P+A+I+ P+RELA Q  N+       I +  L+  L  
Sbjct  63   FLTATFNHLLTTPEHEGRKPTQPRAIIMAPTRELAIQIFNDAAPL---IASTGLKAALAY  119

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG +   QL+ L++GVDI++GT GR+ D       NL+ ++ +VLDEAD +   G+   I
Sbjct  120  GGESYDKQLAKLQDGVDILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDI  179

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-H  443
              +  ++P+     K    ++ SATL S+ V++L+ + MH P  V ++ E      +   
Sbjct  180  RFLFRRMPE----PKERLNMLFSATL-SYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEE  234

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
            +  P N     L + L                                         I+E
Sbjct  235  LFYPSNEDKMALLQTL-----------------------------------------IEE  253

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
               D+AI+F  TK  C+++  +    G              L GD    +R++ LE+F +
Sbjct  254  EWPDRAIVFANTKHKCESIWGHLAADG---------HRVGLLTGDVPQKKREKILEQFTR  304

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
            G+V  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +IS    + 
Sbjct  305  GEVDLLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDY  364

Query  624  EKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDE  683
                  +              E       Y+   L+ ++   L     ++          
Sbjct  365  AINLPPIEE----------YIEHAIPVSDYDASALIQDLPAPL-----RMRAPRTQQRRT  409

Query  684  FDGKVTYGQKRAAG  697
              G    G ++  G
Sbjct  410  NTGGTRSGNRKPQG  423


 Score = 102 bits (254),  Expect = 9e-22, Method: Composition-based stats.
 Identities = 56/352 (16%), Positives = 118/352 (34%), Gaps = 58/352 (16%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+++G+ P++ + +E+  +   T IQA ++P++L G D+   A+TG+GKT AF       
Sbjct  11   FADLGLKPQVTEGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +  T   + EG+K         +   +  +  ++               +  +    G +
Sbjct  71   LLTTP--EHEGRKPTQPRAIIMAPTRELAIQIFN--------------DAAPLIASTGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
            A        +  +++    G+           + +GT                +  D Y 
Sbjct  115  AALAYGGESYDKQLAKLQDGV----------DILIGTTG--------------RIIDFYK  150

Query  184  EE-FTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFE---IPPHMKNQALFPACVLKNAEL  238
            +  F +++     LD  +    F     KD+   F     P    N         +  EL
Sbjct  151  QRVFNLNNIQAVVLD--EADRMFDLGFIKDIRFLFRRMPEPKERLNMLFSATLSYRVQEL  208

Query  239  KFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSREL  298
             F           +       +  +     S     A +          +A++   ++  
Sbjct  209  AFEHMHNPEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQTLIEEEWPDRAIVFANTK--  266

Query  299  AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                 +  +    ++     R  L+ G V  + +  +LE      VD++V T
Sbjct  267  -----HKCESIWGHLAADGHRVGLLTGDVPQKKREKILEQFTRGEVDLLVAT  313


>sp|A0KS84|RHLB_SHESA ATP-dependent RNA helicase RhlB OS=Shewanella 
sp. (strain ANA-3) OX=94122 GN=rhlB PE=3 SV=1
Length=439

 Score = 295 bits (756),  Expect = 2e-91, Method: Composition-based stats.
 Identities = 107/451 (24%), Positives = 176/451 (39%), Gaps = 73/451 (16%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
              DL L  E+   +          ++   L                    ++   G  + 
Sbjct  11   FADLPLHPEVKQALAENGFEFCTPIQALSLPVLL--------QSKDIAGQAQTGTGKTMA  62

Query  269  SQHSGNAQVTQTKFLP-----NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLI  323
                       +  +P     N P+A+I+ P+RELA Q   +     K+     L+  ++
Sbjct  63   FLV-ATFNHLLSTPVPENRQLNQPRAIIMAPTRELAIQIAKDAILLAKH---SHLKVGIV  118

Query  324  IGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDF  383
             GG +   Q   L+ GVDI++GT GR+ D V  G +NL  ++ +VLDEAD +   G+   
Sbjct  119  YGGESYDVQRKTLDQGVDILIGTTGRIIDYVRQGIINLGGIQAVVLDEADRMFDLGFIKD  178

Query  384  INRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-  442
            I  +  ++P       +   ++ SATL S  V++L+   M+ P  V++  E+     +  
Sbjct  179  IRFLFRRMPSA----DQRLNMLFSATL-SMKVQELAYDHMNEPVKVEIAPEEKTSKNIKE  233

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
             +  P      RL                                          +  I+
Sbjct  234  EIFYPSQEDKMRL-----------------------------------------LLTLIE  252

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
            E   ++AI+F  TK  C+NL  +          +G       L GD    +R + LE+F 
Sbjct  253  EDWPEKAIVFSNTKHSCENLWSWL---------EGDGHRVGLLTGDVPQKKRIRILEQFT  303

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            +G +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G+++S    E
Sbjct  304  QGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEE  363

Query  623  KEKVWYHVCSSRGKGCYNTRLKEDGGCTIWY  653
                   + +        +    D       
Sbjct  364  YALNLPAIETYINHSIPVSNYDRDALLEDIP  394


 Score = 101 bits (252),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 62/351 (18%), Positives = 118/351 (34%), Gaps = 56/351 (16%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+++ + PE+ QA+ E  +   T IQA S+P++L   D+   A+TG+GKT AF +     
Sbjct  11   FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNH  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +  T     E ++         +   +  +         A  S          + +   R
Sbjct  71   LLSTP--VPENRQLNQPRAIIMAPTRELAIQIAKDAILLAKHSHLKVGIVYGGESYDVQR  128

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
             T  L +G    ++     G  R+     Q  ++LG           G ++         
Sbjct  129  KT--LDQGV---DILIGTTG--RIIDYVRQGIINLG-----------GIQA---------  161

Query  184  EEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFEIPPHM---KNQALFPACVLKNAELK  239
                        + +D+    F     KD+   F   P      N        +K  EL 
Sbjct  162  ------------VVLDEADRMFDLGFIKDIRFLFRRMPSADQRLNMLFSATLSMKVQELA  209

Query  240  FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELA  299
            ++   E  K              +     SQ      +          KA++   ++   
Sbjct  210  YDHMNEPVKVEIAPEEKTSKNIKEEIFYPSQEDKMRLLLTLIEEDWPEKAIVFSNTK---  266

Query  300  EQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                ++ +    +++    R  L+ G V  + ++ +LE      +DI+V T
Sbjct  267  ----HSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDILVAT  313


>sp|A1DG51|DBP3_NEOFI ATP-dependent RNA helicase dbp3 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp3 
PE=3 SV=1
Length=503

 Score = 297 bits (761),  Expect = 2e-91, Method: Composition-based stats.
 Identities = 110/397 (28%), Positives = 167/397 (42%), Gaps = 65/397 (16%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVT---QTKFLPNAPKALIVEPSRELAEQTL  303
                     + +++   G  +        ++    + K     P A+I+ P+RELA Q  
Sbjct  117  PLLFAGRDVIGIAETGSGKTLAFGLPCIKKILDSGKVKRKHARPAAVIISPTRELAMQIY  176

Query  304  NNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQ  363
            +   Q  K+  +  +R   I GGV   +Q   L+    IVV TPGRL DL + G ++L +
Sbjct  177  D---QLSKFGASVDIRVTCIYGGVKKDEQREALKTAA-IVVATPGRLKDLQNDGSVDLGK  232

Query  364  VRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIM  423
            V++LVLDEAD +L +G+   I  +   +P       + Q ++ +AT     V+ L+   M
Sbjct  233  VKYLVLDEADRMLDKGFEQDIKDIIRSMPD-----SKRQTVMFTATWPP-SVRDLAATFM  286

Query  424  HFPTWVDLKGEDSV----PDTVHHVVVPVNP--KTDRLWERLGKSHIRTDDVHAKDNTRP  477
                 V + G+ S        +  VV  V P  K  RL + L +S               
Sbjct  287  TSAVTVTIGGDPSADPRANTRIKQVVEVVKPQEKEARLVQLLNRSQRGAAVC--------  338

Query  478  GANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKG  537
                                         D+ ++FC  K +   +E+           + 
Sbjct  339  -----------------------------DKVLVFCLYKKEAVRVERLL---------RT  360

Query  538  HQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQ  597
              F    +HGD   HER ++LE FK G    L+ TDVAARG+DI  V  VINVT P   +
Sbjct  361  KNFKVAGIHGDLNQHERFKSLEAFKTGAATVLVATDVAARGLDIPSVKLVINVTFPLTVE  420

Query  598  NYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            +YVHRIGR GRA   G AI+L     +     + +  
Sbjct  421  DYVHRIGRTGRAGADGHAITLFTETDKAQSGALINVL  457


 Score = 105 bits (263),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 40/143 (28%), Positives = 64/143 (45%), Gaps = 18/143 (13%)

Query  1    MAAFSEMGVMPEIAQAVEE--MDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSI  58
            + +FS +   P     + +    +  PT IQ+ + PL+  G DV+  AETGSGKT AF +
Sbjct  85   IISFSHL---PSSFSKIYDPLSSFSSPTPIQSATWPLLFAGRDVIGIAETGSGKTLAFGL  141

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD-GLCC------  111
            P I+ + ++ K +++  +    I    S   +  M  YD+ S F    D  + C      
Sbjct  142  PCIKKILDSGKVKRKHARPAAVI---ISPTRELAMQIYDQLSKFGASVDIRVTCIYGGVK  198

Query  112  ---QSREVKEWHGCRATKGLMKG  131
               Q   +K      AT G +K 
Sbjct  199  KDEQREALKTAAIVVATPGRLKD  221


>sp|Q5R5F5|IF4A1_PONAB Eukaryotic initiation factor 4A-I OS=Pongo 
abelii OX=9601 GN=EIF4A1 PE=2 SV=1
Length=406

 Score = 294 bits (752),  Expect = 3e-91, Method: Composition-based stats.
 Identities = 112/425 (26%), Positives = 186/425 (44%), Gaps = 74/425 (17%)

Query  231  CVLKNAELK--FNFGEEEFKFPPKD-------GFVALSKAPDGYIVKSQHSGNAQVTQTK  281
              L  + L+  + +G E+     +        G+  +++A  G   K+     + + Q +
Sbjct  37   MNLSESLLRGIYAYGFEKPSAIQQRAILSCIKGYDVIAQAQSG-TGKTATFAISILQQIE  95

Query  282  FLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG-V  340
                A +AL++ P+RELA+Q    +     Y+          IGG   R ++  L+    
Sbjct  96   LDLKATQALVLAPTRELAQQIQKVVMALGDYMGAS---CHACIGGTNVRAEVQKLQMEAP  152

Query  341  DIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR  400
             I+VGTPGR+ D+++   L+   ++  VLDEAD +LS+G+ D I  +  ++         
Sbjct  153  HIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKL------NSN  206

Query  401  LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLG  460
             QV++ SAT+ S DV ++++K M  P  + +K E+   + +    + V  +  +L     
Sbjct  207  TQVVLLSATMPS-DVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKL-----  260

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
                                           L   Y    I      QA+IF  T+   D
Sbjct  261  -----------------------------DTLCDLYETLTIT-----QAVIFINTRRKVD  286

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             L +               F+   +HGD    ER   +  F+ G  R LI TD+ ARGID
Sbjct  287  WLTEKM---------HARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGID  337

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYN  640
            +  V  VIN  LP  ++NY+HRIGR GR  R G+AI++V  E ++    +     +  YN
Sbjct  338  VQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI-----ETFYN  392

Query  641  TRLKE  645
            T ++E
Sbjct  393  TSIEE  397


 Score = 89.8 bits (221),  Expect = 9e-18, Method: Composition-based stats.
 Identities = 27/131 (21%), Positives = 51/131 (39%), Gaps = 3/131 (2%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +  +M +   + + +    +  P+ IQ  +I   + G DV+  A++G+GKT  F+I +
Sbjct  31   VDSLDDMNLSESLLRGIYAYGFEKPSAIQQRAILSCIKGYDVIAQAQSGTGKTATFAISI  90

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI---GSDGLCCQSREVK  117
            +Q +   LK  Q      T             +  Y   S  A     +     Q  +++
Sbjct  91   LQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQME  150

Query  118  EWHGCRATKGL  128
              H    T G 
Sbjct  151  APHIIVGTPGR  161


>sp|Q2H0R2|DBP10_CHAGB ATP-dependent RNA helicase DBP10 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / 
NBRC 6347 / NRRL 1970) OX=306901 GN=DBP10 PE=3 SV=1
Length=762

 Score = 305 bits (780),  Expect = 3e-91, Method: Composition-based stats.
 Identities = 111/454 (24%), Positives = 177/454 (39%), Gaps = 36/454 (8%)

Query  219  PPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVT  278
                K    F A  L +  L+     + F  P       +    +   V       +  T
Sbjct  79   SKSAKKSGGFQAMGLNSNLLR-AISRKGFSVPTPIQRKTIPLVLERRDVVGMARTGSGKT  137

Query  279  QTKFLPN-----------APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
                +P              +A+I+ PSRELA QTL  +K+  K      L+ +L++GG 
Sbjct  138  AAFVIPMIERLKAHSARVGARAIIMSPSRELALQTLKVVKELGK---GTDLKTVLLVGGD  194

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM  387
            +  +Q  ++    DI++ TPGR   L     LNLS VR++V DEAD L   G++  +  +
Sbjct  195  SLEEQFGLMAANPDIIIATPGRFLHLKVEMSLNLSSVRYVVFDEADRLFEMGFAAQLTEI  254

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
             + +P         Q ++ SATL S  V+  +   +  P+ + L  E  V   +      
Sbjct  255  LHALP------PSRQTLLFSATLPSSLVE-FARAGLQEPSLIRLDAETKVSPDLESAFFS  307

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
            V              HI  D +        G        +A K  +        ++    
Sbjct  308  VKGGEKEG----ALLHILHDVIKMPLGVPEGIEEETDEQQARKRKRDSERRNRKEKPTEH  363

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
              IIF  TK   + +       G         FS   ++G      RK  ++ F++G   
Sbjct  364  STIIFTATKHHVEYIAHLLRHAG---------FSVSYIYGSLDQTARKIQVDNFRRGRTN  414

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             L+ TDVAARGIDI  +  VIN   P + + +VHR+GR  RA + G A +L+        
Sbjct  415  ILVVTDVAARGIDIPVLANVINYDFPPQPKIFVHRVGRTARAGQRGWAYALLQGTSRPCG  474

Query  628  YHVCSSRGKGC-YNTRLKEDGGCTIWYNEMQLLS  660
              V   R +     TR+ +    T W +  +  +
Sbjct  475  GRVRRMRTQRWRMQTRMNQPLRKTKWTSSPEKTN  508


 Score = 104 bits (259),  Expect = 9e-22, Method: Composition-based stats.
 Identities = 58/361 (16%), Positives = 114/361 (32%), Gaps = 47/361 (13%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F  MG+   + +A+    + +PT IQ ++IPL+L   DV+  A TGSGKT AF IP+I+ 
Sbjct  88   FQAMGLNSNLLRAISRKGFSVPTPIQRKTIPLVLERRDVVGMARTGSGKTAAFVIPMIER  147

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD---GLCCQSREVKEWH  120
            +          + G   I    S   +  +           G+D    L      ++E  
Sbjct  148  LKAHS-----ARVGARAI--IMSPSRELALQTLKVVKELGKGTDLKTVLLVGGDSLEEQF  200

Query  121  GCRATKGLMKGKHYYEVSCHDQG-------LCRVGWSTMQA-SLDLGTDKFGFGFGGTGK  172
            G  A           ++     G          +  S+++    D     F  GF     
Sbjct  201  GLMAANP--------DIIIATPGRFLHLKVEMSLNLSSVRYVVFDEADRLFEMGFAAQLT  252

Query  173  KSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACV  232
            +  +              T+     +    V+F++ G        +    K      +  
Sbjct  253  EILHAL-----PPSRQ--TLLFSATLPSSLVEFARAGLQEPSLIRLDAETKVSPDLESAF  305

Query  233  LKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQ---TKFLPNAPKA  289
                  +                + + +  +    + Q     + ++    K  P     
Sbjct  306  FSVKGGEKEGALLHILHDVIKMPLGVPEGIEEETDEQQARKRKRDSERRNRKEKPTEHST  365

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG---VAARDQLSVLENG-VDIVVG  345
            +I   ++       ++++     + +       I G     A + Q+     G  +I+V 
Sbjct  366  IIFTATK-------HHVEYIAHLLRHAGFSVSYIYGSLDQTARKIQVDNFRRGRTNILVV  418

Query  346  T  346
            T
Sbjct  419  T  419


>sp|Q0CL13|DBP3_ASPTN ATP-dependent RNA helicase dbp3 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dbp3 
PE=3 SV=1
Length=493

 Score = 297 bits (759),  Expect = 3e-91, Method: Composition-based stats.
 Identities = 113/418 (27%), Positives = 177/418 (42%), Gaps = 76/418 (18%)

Query  226  ALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSG---NAQVTQTKF  282
            +      +++A     FG            + +++   G  +              + K 
Sbjct  97   SFKSPTSIQSATWPLLFG--------GRDVIGIAETGSGKTLAFGLPCLKKIEDSKKKKS  148

Query  283  LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDI  342
             P  P A+I+ P+RELA Q  +   Q +K+      +   I GGV   +Q  VL+   +I
Sbjct  149  KPYQPMAVIISPTRELAMQIHD---QLQKFAGPVGAKVACIFGGVRKDEQREVLKT-ANI  204

Query  343  VVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            VV TPGRL DL + G ++L +VR+LVLDEAD +L +G+   I  +   +P       + Q
Sbjct  205  VVATPGRLKDLQNDGSVDLGKVRYLVLDEADRMLDKGFEQDIKDIIQPMPV-----SKRQ  259

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDS----VPDTVHHVVVPVNPKTDRLWER  458
             ++ +AT     V++L+   M  P  V + G+ S        +  VV  V P        
Sbjct  260  TVMFTATWPPV-VRELASTFMSSPVTVTIGGDPSADPRANTRIKQVVEVVKPHE------  312

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK--MDQAIIFCRTK  516
                                              K    V+ +K+H+   ++ + FC  K
Sbjct  313  ----------------------------------KEGRLVQLLKQHQRGAEKVLAFCLYK  338

Query  517  IDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAA  576
             +   +E++   +G         F    +HGD    ER ++L+ FK G    L+ TDVAA
Sbjct  339  KEATRIERFLQSRG---------FKVAGIHGDLSQQERFRSLDAFKTGAATVLVATDVAA  389

Query  577  RGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            RG+DI  V  VINVT P   ++YVHRIGR GRA   G AI+L     +     + +  
Sbjct  390  RGLDIPAVKLVINVTFPLTVEDYVHRIGRTGRAGAEGHAITLFTETDKAQSGALINVL  447


 Score = 93.3 bits (230),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 40/143 (28%), Positives = 65/143 (45%), Gaps = 18/143 (13%)

Query  1    MAAFSEMGVMPEIAQAVEEM--DWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSI  58
            + +FS +   PE    + E    +  PT IQ+ + PL+ GG DV+  AETGSGKT AF +
Sbjct  78   IISFSHL---PECNSNLYEQLNSFKSPTSIQSATWPLLFGGRDVIGIAETGSGKTLAFGL  134

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA-IGSDGLCC------  111
            P ++ + ++ K + +  +    I    S   +  M  +D+   FA      + C      
Sbjct  135  PCLKKIEDSKKKKSKPYQPMAVI---ISPTRELAMQIHDQLQKFAGPVGAKVACIFGGVR  191

Query  112  ---QSREVKEWHGCRATKGLMKG  131
               Q   +K  +   AT G +K 
Sbjct  192  KDEQREVLKTANIVVATPGRLKD  214


>sp|A6R3R5|IF4A_AJECN ATP-dependent RNA helicase eIF4A OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=TIF1 PE=3 
SV=1
Length=385

 Score = 293 bits (750),  Expect = 4e-91, Method: Composition-based stats.
 Identities = 109/416 (26%), Positives = 178/416 (43%), Gaps = 66/416 (16%)

Query  228  FPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN------AQVTQ  279
            F A  L+   L+  + +G E      +   + + K  D        +G       + + +
Sbjct  27   FDAMNLRAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQK  86

Query  280  TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
                  A +ALI+ P+RELA+Q    +     ++    +     IGG++ R+ +  L++G
Sbjct  87   VDTNLKACQALILAPTRELAQQIQKVVVAIGDFMS---IECHACIGGISVREDMKALQDG  143

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
              +VVGTPGR+ D++    L    ++  VLDEAD +LS G+++ I  +   +PQ T    
Sbjct  144  PQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEADEMLSHGFTEQIYDIFQFLPQST----  199

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              QV++ SAT+   DV +++ K M  P  + +K  +   + +    + V  +  +L    
Sbjct  200  --QVVLLSATMP-QDVLEVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKEEWKL----  252

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
                                            L   Y    I      QA+IFC T+   
Sbjct  253  ------------------------------DTLSDLYETVTIT-----QAVIFCNTRRKV  277

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            D L                 F+   +HGD +  +R   ++ F+ G  R LI TD+ ARGI
Sbjct  278  DWLTDKLT---------ARDFTVSAMHGDMEQQQRDVIMKEFRSGSSRVLIATDLLARGI  328

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRG  635
            D+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V  +           +G
Sbjct  329  DVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDNGRTRKAKRKKG  384


 Score = 90.6 bits (223),  Expect = 4e-18, Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 39/77 (51%), Gaps = 0/77 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F  M +  E+ + V    +  P+ IQ  +I  ++ G DV+  A++G+GKT  FSI  +Q
Sbjct  26   SFDAMNLRAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQ  85

Query  63   IVYETLKDQQEGKKGKT  79
             V   LK  Q      T
Sbjct  86   KVDTNLKACQALILAPT  102


>sp|Q8RXK6|RH8_ARATH DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis 
thaliana OX=3702 GN=RH8 PE=2 SV=1
Length=505

 Score = 297 bits (760),  Expect = 4e-91, Method: Composition-based stats.
 Identities = 97/382 (25%), Positives = 162/382 (42%), Gaps = 61/382 (16%)

Query  254  GFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI  313
            G   L++A +G   K+       + +     N  +A+I+ P+RELA QT    K+  K++
Sbjct  168  GRDILARAKNG-TGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHL  226

Query  314  DNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEAD  373
               K++ ++  GG + +D +  L   V ++VGTPGR+ DL   G   L     LV+DEAD
Sbjct  227  ---KIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEAD  283

Query  374  GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG  433
             LLSQ +   +  + + +P      +  Q+++ SAT     VK   ++ +  P  ++L  
Sbjct  284  KLLSQEFQPSVEHLISFLP------ESRQILMFSATFP-VTVKDFKDRFLTNPYVINLMD  336

Query  434  EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK  493
            E ++   +      V  +                                         K
Sbjct  337  ELTLK-GITQFYAFVEERQ----------------------------------------K  355

Query  494  GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
                     + +++Q+IIFC +    + L +   + G         +SC  +H       
Sbjct  356  IHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELG---------YSCFYIHAKMLQDH  406

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
            R +    F+ G  R L+CTD+  RGIDI  V  VIN   P   + Y+HR+GR GR   +G
Sbjct  407  RNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLG  466

Query  614  LAISLVATEKEKVWYHVCSSRG  635
            LA++L+  E     Y +    G
Sbjct  467  LAVNLITYEDRFNLYRIEQELG  488


 Score = 99.8 bits (247),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 9/91 (10%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +  +  E+   + E  +  P+ IQ ESIP+ L G D+L  A+ G+GKT AF IPV++ 
Sbjct  133  FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK  192

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
            + +     Q                 +  + 
Sbjct  193  IDQDNNVIQ---------AVIIVPTRELALQ  214


>sp|Q6FS54|DBP3_CANGA ATP-dependent RNA helicase DBP3 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP3 PE=3 SV=1
Length=540

 Score = 298 bits (763),  Expect = 4e-91, Method: Composition-based stats.
 Identities = 105/419 (25%), Positives = 177/419 (42%), Gaps = 67/419 (16%)

Query  256  VALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDN  315
            + +++   G            +  +   P   K L++ P+RELA Q  +N+    +    
Sbjct  169  IGVAETGSGKTFAFGVPAINNLLTSSSKPKGIKVLVISPTRELASQIYDNLVLLTQ---K  225

Query  316  PKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGL  375
              +   ++ GGV   DQ   +    ++VV TPGRL DL+  G ++LS V ++VLDEAD +
Sbjct  226  VGIDCCVVYGGVPKDDQRRQIAKS-NVVVATPGRLLDLIEEGSVDLSPVDYMVLDEADRM  284

Query  376  LSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED  435
            L +G+ + I R+  Q     +  K  Q ++ +AT    +V++L+   M  P  V +   D
Sbjct  285  LEKGFEEDIKRIIGQ-----TKSKDRQTLMFTATWPK-EVRELASTFMKEPVKVSIGNRD  338

Query  436  --SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK  493
              S    +  +V  V+P++                                     + L 
Sbjct  339  ELSANKRITQIVEVVDPRSKE-----------------------------------RKLL  363

Query  494  GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
                       K D+ +IF   K +   +E+     G         +    +HGD    +
Sbjct  364  DLLKKYQSGPKKNDKVLIFALYKKEASRVERNLNYNG---------YKVAAIHGDLSQQQ  414

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
            R Q L  FK G    L+ TDVAARG+DI  V  VIN+T P   ++YVHRIGR GRA + G
Sbjct  415  RTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTG  474

Query  614  LAISLVATEKEKVWYHVCSSRG-----------KGCYNTRLKEDGGCTIWYNEMQLLSE  661
             A +L   +++ +   + +              K   +T+ KE G    ++ ++ +  +
Sbjct  475  TAHTLFTEQEKHLAGGLVNVLNGANQPVPEDLIKFGTHTKRKEHGAYGAFFKDIDMSKK  533


 Score = 91.7 bits (226),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 58/139 (42%), Gaps = 18/139 (13%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + AF+++ +  E+   + +  +  PT IQA S P +L G DV+  AETGSGKT AF +P 
Sbjct  129  LLAFNQISLDKEVQNEIAK--FPKPTPIQAVSWPYLLSGKDVIGVAETGSGKTFAFGVPA  186

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC---------  111
            I  +  +        K K       S   +     YD            CC         
Sbjct  187  INNLLTS------SSKPKGIKVLVISPTRELASQIYDNLVLLTQKVGIDCCVVYGGVPKD  240

Query  112  -QSREVKEWHGCRATKGLM  129
             Q R++ + +   AT G +
Sbjct  241  DQRRQIAKSNVVVATPGRL  259


>sp|Q4IP34|PRP5_GIBZE Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 
/ FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=PRP5 PE=3 
SV=2
Length=1207

 Score = 312 bits (800),  Expect = 4e-91, Method: Composition-based stats.
 Identities = 119/495 (24%), Positives = 188/495 (38%), Gaps = 107/495 (22%)

Query  231  CVLKNAELKF--NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN------AQVTQTKF  282
            C L    L    N G E+          AL    D   V    SG             K 
Sbjct  582  CGLTRQTLDVVDNLGYEKPTPIQMQALPALMSGRDVIGVAKTGSGKTVAFLLPMFRHIKD  641

Query  283  LP-----NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE  337
             P     + P  LI+ P+RELA Q   + K F K +    LR +   GG   R+Q++ L+
Sbjct  642  QPPLKDTDGPIGLIMTPTRELAVQIHKDCKPFLKMMG---LRAVCAYGGAPIREQIAELK  698

Query  338  NGVDIVVGTPGRLDDLV---STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV  394
             G +I+V TPGR+ DL+        NL +V ++VLDEAD +   G+   + ++   +   
Sbjct  699  RGAEIIVCTPGRMIDLLAANQGRVTNLKRVTYVVLDEADRMFDMGFEPQVMKIFANM---  755

Query  395  TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVV--PVNPKT  452
                   Q I+ SAT+    +  L++K++  P  V + G   V   +  +V       K 
Sbjct  756  ---RPDRQTILFSATMPRI-IDSLTKKVLKNPIEVTVGGRSVVAKEIEQIVEVRDEPSKF  811

Query  453  DRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF  512
             R+ E LG+ + R +D                                       + +IF
Sbjct  812  HRVLELLGELYDRDEDA--------------------------------------RTLIF  833

Query  513  CRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICT  572
               +   D+L +  + +G         + C+ +HG +   +R   +  FKKG V  LI T
Sbjct  834  VERQEKADDLLKELMMKG---------YPCMSIHGGKDQIDRDSTISDFKKGVVPILIAT  884

Query  573  DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
             VAARG+D+  +  VIN   P+  ++YVHR GR GRA   G+A++ V  E+E     +  
Sbjct  885  SVAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGVAVTFVTPEQENCAPGIAK  944

Query  633  SRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQ  692
            +                                L  +   +   +         KV  G+
Sbjct  945  A--------------------------------LEQSGQPIPDRLNEMRKAHREKVKSGK  972

Query  693  KRAAGGGSYKGHVDI  707
             +   G   KG   +
Sbjct  973  AKDTSGFGGKGLDRL  987


 Score = 112 bits (280),  Expect = 4e-24, Method: Composition-based stats.
 Identities = 61/372 (16%), Positives = 127/372 (34%), Gaps = 51/372 (14%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  +++ G+  +    V+ + +  PT IQ +++P ++ G DV+  A+TGSGKT AF +P+
Sbjct  576  VQKWAQCGLTRQTLDVVDNLGYEKPTPIQMQALPALMSGRDVIGVAKTGSGKTVAFLLPM  635

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120
             + +    KDQ   K     I    +   +  +  +     F           R V  + 
Sbjct  636  FRHI----KDQPPLKDTDGPIGLIMTPTRELAVQIHKDCKPFLKMM-----GLRAVCAYG  686

Query  121  GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD  180
            G    + + + K   E+     G   +              +  +       +  +  F+
Sbjct  687  GAPIREQIAELKRGAEIIVCTPGRM-IDLLAANQGRVTNLKRVTYVVLDEADRMFDMGFE  745

Query  181  NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF  240
                +   +      +  D+  + FS           I   +  +      VLKN  ++ 
Sbjct  746  PQVMKIFAN------MRPDRQTILFSA------TMPRIIDSLTKK------VLKNP-IEV  786

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE  300
              G         +  V +   P  +     H     + +        + LI    +E A+
Sbjct  787  TVGGRSVVAKEIEQIVEVRDEPSKF-----HRVLELLGELYDRDEDARTLIFVERQEKAD  841

Query  301  QTLNNIKQFKKYIDNPKLRELLIIGG---VAARDQLSVLENG-VDIVVGTPGRLDDLVST  356
                      K +       + I GG   +     +S  + G V I++ T       V+ 
Sbjct  842  -------DLLKELMMKGYPCMSIHGGKDQIDRDSTISDFKKGVVPILIAT------SVAA  888

Query  357  GKLNLSQVRFLV  368
              L++ Q++ ++
Sbjct  889  RGLDVKQLKLVI  900


>sp|Q6CT46|DBP3_KLULA ATP-dependent RNA helicase DBP3 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP3 PE=3 SV=1
Length=504

 Score = 297 bits (760),  Expect = 4e-91, Method: Composition-based stats.
 Identities = 106/419 (25%), Positives = 171/419 (41%), Gaps = 67/419 (16%)

Query  256  VALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDN  315
            + +++   G            +  +    ++ K L++ P+RELA Q  +N+         
Sbjct  133  IGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTRELASQIYDNLIVLTDACG-  191

Query  316  PKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGL  375
              LR   + GGV    Q   L     +VV TPGRL DL+  G ++LS V +LVLDEAD +
Sbjct  192  --LRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEEGSVDLSHVNYLVLDEADRM  248

Query  376  LSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED  435
            L +G+ + I ++  Q     +     Q ++ +AT    +V++L+   M  P  V +   D
Sbjct  249  LEKGFEEDIKKIIRQ-----TRSTSRQTLMFTATWPK-EVRELASSFMSEPVKVSIGNRD  302

Query  436  --SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK  493
              S    +  +V  V+P                                       K L 
Sbjct  303  ELSANKRITQIVEVVDP-----------------------------------FRKEKKLL  327

Query  494  GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
                       K D+ +IF   K +   +E+     G         +    +HGD    +
Sbjct  328  ELLKKYHSGPTKNDKVLIFALYKKEASRVERNLKYNG---------YDVAAIHGDLSQQQ  378

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
            R Q L  FK G    L+ TDVAARG+DI  V  VIN+T P   ++YVHRIGR GRA + G
Sbjct  379  RTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYG  438

Query  614  LAISLVATEKEKVWYHVCSSRG-----------KGCYNTRLKEDGGCTIWYNEMQLLSE  661
             A +L   +++ +   + +              K   +T+ KE      ++ ++ L  +
Sbjct  439  TAHTLFTEQEKHLAGALVNVLNGAGQPVPEELKKFGTHTKKKEHSAYGAFFKDVDLSKK  497


 Score = 87.5 bits (215),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 56/136 (41%), Gaps = 18/136 (13%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS++  + +I + + +  +  PT IQA S P +L G DV+  AETGSGKT AF +P I  
Sbjct  96   FSQVSFIDQIQKEISK--FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINN  153

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD-GLCC---------QS  113
            +  +      G K  +      S   +     YD             CC         Q 
Sbjct  154  IVTS------GDKSSSVKVLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQR  207

Query  114  REVKEWHGCRATKGLM  129
             +++      AT G +
Sbjct  208  EDLRRSQVVVATPGRL  223


>sp|Q109G2|RH12_ORYSJ DEAD-box ATP-dependent RNA helicase 12 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os10g0503700 PE=2 
SV=2
Length=521

 Score = 297 bits (761),  Expect = 4e-91, Method: Composition-based stats.
 Identities = 98/382 (26%), Positives = 161/382 (42%), Gaps = 61/382 (16%)

Query  254  GFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI  313
            G   L++A +G   K+       + +     NA + +I+ P+RELA QT    K+  KY+
Sbjct  184  GSDILARAKNG-TGKTAAFCIPALEKIDPEKNAIQVVILVPTRELALQTSQVCKELGKYL  242

Query  314  DNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEAD  373
            +   ++ ++  GG + +D +  L   V ++VGTPGR+ DL   G   L     LV+DEAD
Sbjct  243  N---IQVMVSTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTRKGICVLKDCSMLVMDEAD  299

Query  374  GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG  433
             LL+  +   I ++ + +P         Q+++ SAT     VK   EK +  P  ++L  
Sbjct  300  KLLAPEFQPSIEQLIHFLPA------NRQLLMFSATFP-VTVKDFKEKYLPRPYVINLMD  352

Query  434  EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK  493
            E ++   +      V  +                                         K
Sbjct  353  ELTLK-GITQYYAFVEERQ----------------------------------------K  371

Query  494  GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
                     + +++Q+IIFC +    + L +   + G         +SC  +H       
Sbjct  372  VHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELG---------YSCFYIHAKMLQDH  422

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
            R +    F+ G  R L+CTD+  RGIDI  V  VIN   P   + Y+HR+GR GR   +G
Sbjct  423  RNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKTSETYLHRVGRSGRFGHLG  482

Query  614  LAISLVATEKEKVWYHVCSSRG  635
            LA++L+  E     Y +    G
Sbjct  483  LAVNLITYEDRFNLYRIEQELG  504


 Score = 96.0 bits (237),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 39/91 (43%), Gaps = 9/91 (10%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +  +  E+   + E  +  P+ IQ ESIP+ L G D+L  A+ G+GKT AF IP ++ 
Sbjct  149  FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEK  208

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
            +       Q                 +  + 
Sbjct  209  IDPEKNAIQV---------VILVPTRELALQ  230


>sp|A1CMQ7|SUB2_ASPCL ATP-dependent RNA helicase sub2 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=sub2 PE=3 SV=1
Length=441

 Score = 295 bits (754),  Expect = 4e-91, Method: Composition-based stats.
 Identities = 99/382 (26%), Positives = 161/382 (42%), Gaps = 63/382 (16%)

Query  256  VALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDN  315
              L +A  G + K+       + Q + +P     L++  +RELA Q  N   +F KY+  
Sbjct  97   DVLCQAKSG-LGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYL--  153

Query  316  PKLRELLIIGGVAARDQLSVLENG---VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
            P ++  +  GG   +  + VL N     +IVVGTPGRL+ LV   KL+L  V+  VLDE 
Sbjct  154  PDVKTAVFYGGTPIQKDVEVLSNKESYPNIVVGTPGRLNALVRDKKLSLRNVKAFVLDEC  213

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D +L       + R   +I + T   K  QV++ SATL S +++ + +K M  P  V + 
Sbjct  214  DKMLD---QIDMRRDVQEIFRATPADK--QVMMFSATL-SQEIRPICKKFMRNPLEVYVD  267

Query  433  GEDS-VPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
             +       +    + ++                                          
Sbjct  268  DDTKLTLHGLQQYYIKLSESE---------------------------------------  288

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
             K       +   + +Q IIF ++ +  + L++   +           F  + +H     
Sbjct  289  -KNRKLNELLDSLEFNQVIIFVKSTLRANELDKLLRE---------CNFPSIAVHSGVSQ  338

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
             ER +  + FK+ + R  + TDV  RGIDI  +   IN  LP +  +Y+HR+GR GR   
Sbjct  339  EERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGT  398

Query  612  MGLAISLVATE-KEKVWYHVCS  632
             GL+IS V+ E  EKV   +  
Sbjct  399  KGLSISFVSNEDDEKVLKEIEK  420


 Score = 71.7 bits (174),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 32/63 (51%), Gaps = 0/63 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F +  +  E+ +A+ +  +  P+++Q   IP  +   DVL  A++G GKT  F +  +
Sbjct  58   TGFRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTL  117

Query  62   QIV  64
              +
Sbjct  118  HQL  120


>sp|Q53RK8|RH21_ORYSJ DEAD-box ATP-dependent RNA helicase 21 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os03g0708600 PE=2 
SV=1
Length=736

 Score = 303 bits (777),  Expect = 5e-91, Method: Composition-based stats.
 Identities = 92/441 (21%), Positives = 167/441 (38%), Gaps = 77/441 (17%)

Query  213  GLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHS  272
             L  E+   ++         ++ A +             +   + +++   G        
Sbjct  321  KLGTELLRAVEKAGYKEPSPIQMASIPLGL--------QQRDVIGIAETGSGKTAAFVLP  372

Query  273  GNAQVTQTKFLPN-----APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
              + +T+   +        P A+++ P+RELA+Q      +F  Y+    ++ + I+GG 
Sbjct  373  MLSYITRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFATYLG---IKVVSIVGGQ  429

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM  387
            +  +Q   +  G ++V+ TPGRL D +      L+Q  ++VLDEAD ++  G+   +  +
Sbjct  430  SIEEQGFKIRQGCEVVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGV  489

Query  388  HNQIPQVTSDGKR-----------LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDS  436
             + +P      +                + SAT+    V++L+ K +  P  V +     
Sbjct  490  LDAMPSSNLKPENEDEELDAKTIYRTTYMFSATMPPA-VERLARKYLRNPVVVTIGTAGK  548

Query  437  VPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEY  496
              D +   V+                                              K   
Sbjct  549  ATDLITQNVIMTKESE----------------------------------------KMSR  568

Query  497  AVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQ  556
              + + +     AI+FC TK   D   +   + G         F    LHG +   +R+ 
Sbjct  569  LQKILTDLGDKPAIVFCNTKKSADARAKDLDKAG---------FRVTTLHGGKSQEQRET  619

Query  557  NLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAI  616
            +L+ F+      L+ TDVA RGIDI  V +VIN  +P     Y HRIGR GRA + GLA 
Sbjct  620  SLDGFRNRRFTVLVATDVAGRGIDIPDVAHVINYEMPSSIDTYTHRIGRTGRAGKKGLAT  679

Query  617  SLVATEKEKVWYHVCSSRGKG  637
            S +  E   +++ +     + 
Sbjct  680  SFLTLENTDIFFDLKQMLIQS  700


 Score = 105 bits (261),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 49/103 (48%), Gaps = 1/103 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M  +SE  +  E+ +AVE+  +  P+ IQ  SIPL L   DV+  AETGSGKT AF +P+
Sbjct  314  MRKWSESKLGTELLRAVEKAGYKEPSPIQMASIPLGLQQRDVIGIAETGSGKTAAFVLPM  373

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
            +  +   L    E  + +       +   +      +    FA
Sbjct  374  LSYITR-LPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFA  415


>sp|O22907|RH24_ARATH DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis 
thaliana OX=3702 GN=RH24 PE=1 SV=2
Length=760

 Score = 304 bits (778),  Expect = 5e-91, Method: Composition-based stats.
 Identities = 108/438 (25%), Positives = 171/438 (39%), Gaps = 68/438 (16%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K  +D G + +I   +K QA      ++   L                 + ++K   G  
Sbjct  228  KTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLS--------GRDVIGIAKTGSGKT  279

Query  267  VKSQHSGNAQVTQTKFLPN--APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
                      +     L     P  +I  P+RELA Q     K+F K      LR   + 
Sbjct  280  AAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSK---AYGLRVSAVY  336

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG++  +Q   L+ G +IVV TPGRL D++    L + +  +LVLDEAD +   G+   +
Sbjct  337  GGMSKHEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQV  396

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
              +  QI          Q ++ SAT+  + V+KL+ +I+  P  V +       + +  V
Sbjct  397  RSIVGQI------RPDRQTLLFSATMP-WKVEKLAREILSDPIRVTVGEVGMANEDITQV  449

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
            V  +    ++L   L K     D+                                    
Sbjct  450  VNVIPSDAEKLPWLLEKLPGMIDEGD----------------------------------  475

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
                 ++F   K   D +E              + F    LHGD+    R + L++FK G
Sbjct  476  ----VLVFASKKATVDEIEAQLTL---------NSFKVAALHGDKDQASRMETLQKFKSG  522

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAE-RMGLAISLVATEK  623
                LI TDVAARG+DI  +  V+N  +  +   +VHRIGR GRA  R G+A +LV   +
Sbjct  523  VHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQRE  582

Query  624  EKVWYHVCSSRGKGCYNT  641
             +    + +S      N 
Sbjct  583  ARFAGELVNSLVAAGQNV  600


 Score = 115 bits (287),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 29/105 (28%), Positives = 53/105 (50%), Gaps = 4/105 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F + G   +I  A+++  +  PT IQ +++P++L G DV+  A+TGSGKT AF +P+
Sbjct  227  VKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPM  286

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG  105
            I  +     DQ E ++ +  I    +   +     +     F+  
Sbjct  287  IVHIM----DQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKA  327


>sp|Q2U6P7|SUB2_ASPOR ATP-dependent RNA helicase sub2 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=sub2 
PE=3 SV=1
Length=441

 Score = 294 bits (753),  Expect = 6e-91, Method: Composition-based stats.
 Identities = 99/382 (26%), Positives = 161/382 (42%), Gaps = 63/382 (16%)

Query  256  VALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDN  315
              L +A  G + K+       + Q + +P     L++  +RELA Q  N   +F KY+  
Sbjct  97   DVLCQAKSG-LGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYL--  153

Query  316  PKLRELLIIGGVAARDQLSVLENG---VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
            P ++  +  GG   +  + VL N     +IVVGTPGRL+ LV   KL+L  V+  VLDE 
Sbjct  154  PDVKTAVFYGGTPIQKDVEVLSNKESYPNIVVGTPGRLNALVRDKKLSLRNVKAFVLDEC  213

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D +L       + R   +I + T   K  QV++ SATL S +++ + +K M  P  V + 
Sbjct  214  DKMLD---QIDMRRDVQEIFRATPADK--QVMMFSATL-SQEIRPVCKKFMRNPLEVYVD  267

Query  433  GEDS-VPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
             +       +    + ++                                          
Sbjct  268  DDTKLTLHGLQQYYIKLSEAE---------------------------------------  288

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
             K       +   + +Q IIF ++ +  + L++   +           F  + +H     
Sbjct  289  -KNRKLNELLDSLEFNQVIIFVKSTLRANELDKLLRE---------CNFPSIAVHSGVSQ  338

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
             ER +  + FK+ + R  + TDV  RGIDI  +   IN  LP +  +Y+HR+GR GR   
Sbjct  339  EERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGT  398

Query  612  MGLAISLVA-TEKEKVWYHVCS  632
             GL+IS V+  E EKV   +  
Sbjct  399  KGLSISFVSNEEDEKVLKDIEK  420


 Score = 71.7 bits (174),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 32/63 (51%), Gaps = 0/63 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F +  +  E+ +A+ +  +  P+++Q   IP  +   DVL  A++G GKT  F +  +
Sbjct  58   TGFRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTL  117

Query  62   QIV  64
              +
Sbjct  118  HQL  120


>sp|A4STJ7|RHLB_AERS4 ATP-dependent RNA helicase RhlB OS=Aeromonas 
salmonicida (strain A449) OX=382245 GN=rhlB PE=3 SV=1
Length=429

 Score = 294 bits (752),  Expect = 6e-91, Method: Composition-based stats.
 Identities = 115/494 (23%), Positives = 194/494 (39%), Gaps = 80/494 (16%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
            ++    +GL  E+   ++++       ++   L                    ++   G 
Sbjct  8    TEKFAQMGLEPEVLAGLESKGFHYCTPIQALSLPL--------LVEGHDLAGQAQTGTGK  59

Query  266  IVKSQHSG-NAQVTQTKFLP---NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLREL  321
             +    +  N  +T     P   N P+A+I+ P+RELA Q  N+         +  L+  
Sbjct  60   TIAFLAATFNYLLTHPLSNPRLVNQPRAIIMAPTRELAVQIYNDADTISA---STGLKLG  116

Query  322  LIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYS  381
            L  GG     QL+VLE GVDI++GT GR+ D   +  ++LS ++ +VLDEAD +   G+ 
Sbjct  117  LAYGGEGYDKQLAVLEQGVDILIGTTGRIIDYFKSKVIDLSNIQVVVLDEADRMFDLGFI  176

Query  382  DFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV  441
              I  +  ++P  T        ++ SATL S  V++L+ + M+ P  V ++ E      +
Sbjct  177  KDIRFLFRRMPAPT----ERLSMLFSATL-SLRVQELAYEHMNHPEHVQIEPEQMTGIRI  231

Query  442  HHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI  501
                                                     E         K    +  +
Sbjct  232  Q----------------------------------------EELFYPSNEDKMLLLLSLM  251

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
            +E   ++AI+F  TK  C+++  +    G              L GD    +R + LE F
Sbjct  252  EEEWPEKAIVFANTKHVCEDVHAWLENDG---------HRVGLLTGDVPQKKRMKILEDF  302

Query  562  KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT  621
             KG +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA + G +ISL   
Sbjct  303  TKGTLDILVATDVAARGLHIPDVTHVFNYDLPDDAEDYVHRIGRTGRAGKSGHSISLACE  362

Query  622  EKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPV  681
            +       +                      Y+   LL ++       +   +P  +   
Sbjct  363  DYAFNLPAIEE----------YIHHPIPVSKYDREALLDDVTAP-KRVVRNRQPVNRNMR  411

Query  682  DEFDGKVTYGQKRA  695
            D   G  +  ++R 
Sbjct  412  DRQGGGNSNNRRRP  425


 Score = 98.3 bits (243),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 57/352 (16%), Positives = 112/352 (32%), Gaps = 58/352 (16%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F++MG+ PE+   +E   +   T IQA S+PL++ G D+   A+TG+GKT AF       
Sbjct  11   FAQMGLEPEVLAGLESKGFHYCTPIQALSLPLLVEGHDLAGQAQTGTGKTIAFLAATFNY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +                I    +   +  +  Y+                    +     
Sbjct  71   LLTHPLSNPRLVNQPRAI--IMAPTRELAVQIYN--------------------DADTIS  108

Query  124  ATKGLMKGKHYYEVSCHDQGL-CRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNY  182
            A+ GL  G  Y       +G   ++        + +GT      +     K  +      
Sbjct  109  ASTGLKLGLAY-----GGEGYDKQLAVLEQGVDILIGTTGRIIDY--FKSKVIDLSNIQ-  160

Query  183  GEEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFE---IPPHMKNQALFPACVLKNAEL  238
                         + +D+    F     KD+   F     P    +        L+  EL
Sbjct  161  ------------VVVLDEADRMFDLGFIKDIRFLFRRMPAPTERLSMLFSATLSLRVQEL  208

Query  239  KFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSREL  298
             +           +   +   +  +     S       +          KA++   ++  
Sbjct  209  AYEHMNHPEHVQIEPEQMTGIRIQEELFYPSNEDKMLLLLSLMEEEWPEKAIVFANTK--  266

Query  299  AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                 +  +    +++N   R  L+ G V  + ++ +LE+     +DI+V T
Sbjct  267  -----HVCEDVHAWLENDGHRVGLLTGDVPQKKRMKILEDFTKGTLDILVAT  313


>sp|B7VME9|RHLB_VIBA3 ATP-dependent RNA helicase RhlB OS=Vibrio 
atlanticus (strain LGP32) OX=575788 GN=rhlB PE=3 SV=1
Length=436

 Score = 294 bits (752),  Expect = 6e-91, Method: Composition-based stats.
 Identities = 108/410 (26%), Positives = 172/410 (42%), Gaps = 63/410 (15%)

Query  257  ALSKAPDGYIVKSQHSGNAQVTQTKF----LPNAPKALIVEPSRELAEQTLNNIKQFKKY  312
              ++   G  +    +    + +T       PN P+A+I+ P+RELA Q  N+       
Sbjct  51   GQAQTGTGKTLAFLTATFNHLLKTPEHEGRKPNQPRAIIMAPTRELAIQIYNDADSL---  107

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
            + +  ++  L  GG +   QL  +E G DI++GT GR+ D       NL+ ++ +VLDEA
Sbjct  108  VASTGIKAALAYGGESYDKQLGKIEEGADILIGTTGRIIDFYKQKVFNLNHIQAVVLDEA  167

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D +   G+   I  +  ++P+     K    ++ SATL S+ V++L+ + MH P  V ++
Sbjct  168  DRMFDLGFIKDIRFLFRRMPE----PKDRLNMLFSATL-SYRVQELAFEHMHNPEHVVVE  222

Query  433  GEDSVPDTVH-HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
             E      +   +  P N     L + L                                
Sbjct  223  PERKTGHRIQEELFYPSNEHKMALLQTL--------------------------------  250

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
                     I+E   D+AIIF  TK  C+++  +    G              L GD   
Sbjct  251  ---------IEEEWPDRAIIFANTKHKCESVWGHLAADG---------HRVGLLTGDVPQ  292

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
             +R++ LE+F KGDV  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA  
Sbjct  293  KKREKILEQFTKGDVDLLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGE  352

Query  612  MGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE  661
             G +IS    +       +          +              M+L + 
Sbjct  353  SGHSISFACEDYAINLPPIEEYIEHAIPMSDYDASALLEDLPAPMRLRTR  402


 Score = 104 bits (258),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 58/351 (17%), Positives = 119/351 (34%), Gaps = 56/351 (16%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+++ ++P++ + +E+  +   T IQA ++P++L G D+   A+TG+GKT AF       
Sbjct  11   FADLDLLPQVIEGLEKKGFDYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            + +T   + EG+K         +   +  +  Y+   +                      
Sbjct  71   LLKTP--EHEGRKPNQPRAIIMAPTRELAIQIYNDADSL--------------------V  108

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
            A+ G+     Y      +    ++G     A + +GT                +  D Y 
Sbjct  109  ASTGIKAALAY----GGESYDKQLGKIEEGADILIGTTG--------------RIIDFYK  150

Query  184  EEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFE---IPPHMKNQALFPACVLKNAELK  239
            ++    + I   + +D+    F     KD+   F     P    N         +  EL 
Sbjct  151  QKVFNLNHIQAVV-LDEADRMFDLGFIKDIRFLFRRMPEPKDRLNMLFSATLSYRVQELA  209

Query  240  FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELA  299
            F           +       +  +     S     A +          +A+I   ++   
Sbjct  210  FEHMHNPEHVVVEPERKTGHRIQEELFYPSNEHKMALLQTLIEEEWPDRAIIFANTK---  266

Query  300  EQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                +  +    ++     R  L+ G V  + +  +LE      VD++V T
Sbjct  267  ----HKCESVWGHLAADGHRVGLLTGDVPQKKREKILEQFTKGDVDLLVAT  313


>sp|Q7MYL2|RHLB_PHOLL ATP-dependent RNA helicase RhlB OS=Photorhabdus 
laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 
/ TT01) OX=243265 GN=rhlB PE=3 SV=1
Length=428

 Score = 294 bits (752),  Expect = 6e-91, Method: Composition-based stats.
 Identities = 111/458 (24%), Positives = 182/458 (40%), Gaps = 71/458 (16%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K   D  L  ++   + N+       ++   L F                  ++   G  
Sbjct  9    KKFSDFALHPKVIEALDNKGFSNCTPIQALTLPFT--------VEGRDVAGQAQTGTGKT  60

Query  267  VKSQHSGNAQV----TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
            +    S    +       +   N P+ALI+ P+RELA Q  ++ +   +      L+  L
Sbjct  61   LAFLASAFHYLLTHPAAEERQTNQPRALIMAPTRELAVQIYSDAEDLAQ---ATGLKMGL  117

Query  323  IIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD  382
              GG     QL +LE+GVDI++GT GRL D    G +NL+ V+ +VLDEAD +   G+  
Sbjct  118  AYGGDGYDKQLKILESGVDILIGTTGRLIDYTKQGHINLNAVQVVVLDEADRMYDLGFIK  177

Query  383  FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-  441
             I  +  ++P V         ++ SATL S+ V++L+ + M+   +++++        + 
Sbjct  178  DIRWLFRRMPPVN----ERMNLLFSATL-SYRVRELAFEQMNHAEYIEVEPLQKTGHRIR  232

Query  442  HHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI  501
              +  P N +  RL + L                                         +
Sbjct  233  EELFYPSNEEKMRLLQTL-----------------------------------------L  251

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
            +E   D+ IIF  TK  C+++  +    G              L GD    +R + LE F
Sbjct  252  EEEWPDRCIIFANTKHRCEDIWAHLAADG---------HRVGLLTGDVAQKKRLRILEEF  302

Query  562  KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT  621
              G++  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +ISL   
Sbjct  303  SNGNIDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACE  362

Query  622  EKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLL  659
            E       +          ++              +  
Sbjct  363  EYALNLPAIEDYIQHSIPVSKYNSQALLKDLPAPKRRY  400


 Score = 109 bits (272),  Expect = 5e-24, Method: Composition-based stats.
 Identities = 55/355 (15%), Positives = 116/355 (33%), Gaps = 60/355 (17%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              FS+  + P++ +A++   +   T IQA ++P  + G DV   A+TG+GKT AF     
Sbjct  9    KKFSDFALHPKVIEALDNKGFSNCTPIQALTLPFTVEGRDVAGQAQTGTGKTLAFLASAF  68

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHG  121
              +        E ++         +   +  +  Y                + ++ +  G
Sbjct  69   HYLLTHPAA--EERQTNQPRALIMAPTRELAVQIY--------------SDAEDLAQATG  112

Query  122  CRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDN  181
             +         +  ++   + G+           + +GT      +   G  + N     
Sbjct  113  LKMGLAYGGDGYDKQLKILESGV----------DILIGTTGRLIDYTKQGHINLNAVQ--  160

Query  182  YGEEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAF-EIPPHMKNQALFPACVLKNAELK  239
                          + +D+    +     KD+   F  +PP  +   L  +  L     +
Sbjct  161  -------------VVVLDEADRMYDLGFIKDIRWLFRRMPPVNERMNLLFSATLSYRVRE  207

Query  240  FNFGEEEFKFPPKDGFVALSKAPDGY---IVKSQHSGNAQVTQTKFLPNAP-KALIVEPS  295
              F +             L K        +    +    ++ QT      P + +I   +
Sbjct  208  LAFEQM--NHAEYIEVEPLQKTGHRIREELFYPSNEEKMRLLQTLLEEEWPDRCIIFANT  265

Query  296  RELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
            +       +  +    ++     R  L+ G VA + +L +LE      +DI+V T
Sbjct  266  K-------HRCEDIWAHLAADGHRVGLLTGDVAQKKRLRILEEFSNGNIDILVAT  313


>sp|A5DS77|DBP2_LODEL ATP-dependent RNA helicase DBP2 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP2 PE=3 SV=1
Length=552

 Score = 298 bits (762),  Expect = 7e-91, Method: Composition-based stats.
 Identities = 107/422 (25%), Positives = 176/422 (42%), Gaps = 67/422 (16%)

Query  218  IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQV  277
            +   +KNQ       ++                     V ++    G  +     G   +
Sbjct  127  VLNELKNQGFPKPTGIQCQGWPMALS--------GRDMVGIAATGSGKTLSYCLPGIVHI  178

Query  278  TQTKFLP--NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
                 L   + P  L++ P+RELA Q      +  K+  + ++R   + GG     Q+  
Sbjct  179  NAQPLLKRGDGPIVLVLAPTRELACQIQ---TECSKFGASSRIRNTCVYGGAPKGPQIRD  235

Query  336  LENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
            L NGV+I + TPGRL D++  GK NL +V +LVLDEAD +L  G+   I ++ +QI    
Sbjct  236  LANGVEICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQI----  291

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG-EDSVPDTVHHVVVPVNPKTDR  454
                  Q ++ SAT    +V+ L+   +  P  V +   E +   T+  +V  V     R
Sbjct  292  --RPDRQTLMWSATWPK-EVQNLARDYLDNPIQVTIGSLELAASHTITQIVQVVTEYQKR  348

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
                L   H+ +    +                                    + ++F  
Sbjct  349  ---DLLVKHLESALADSN----------------------------------SKVLVFAS  371

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
            TK  CD +  Y    G         +  + +HGD++ HER   L+ F++G    ++ TDV
Sbjct  372  TKRTCDEVTSYLRADG---------WPALAIHGDKEQHERDWVLKEFRQGSHSIMVATDV  422

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            AARGID+ G+ +V+N  +P   ++YVHRIGR GR    G AIS     ++K+   +C   
Sbjct  423  AARGIDVKGITHVVNYDMPGNIEDYVHRIGRTGRGGATGTAISFFTDNEKKLGGDLCKIM  482

Query  635  GK  636
             +
Sbjct  483  RE  484


 Score = 100 bits (248),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 44/106 (42%), Gaps = 4/106 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F E G    +   ++   +  PT IQ +  P+ L G D++  A TGSGKT ++ +P 
Sbjct  115  ITSFDEAGFPDYVLNELKNQGFPKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPG  174

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            I  +      Q   K+G   I    +   +         S F   S
Sbjct  175  IVHI----NAQPLLKRGDGPIVLVLAPTRELACQIQTECSKFGASS  216


>sp|A5DB98|IF4A_PICGU ATP-dependent RNA helicase eIF4A OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=TIF1 PE=3 
SV=1
Length=396

 Score = 292 bits (748),  Expect = 8e-91, Method: Composition-based stats.
 Identities = 116/462 (25%), Positives = 190/462 (41%), Gaps = 78/462 (17%)

Query  184  EEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFG  243
            +EF   D      + D     F     DL L   I   +          ++   +     
Sbjct  3    QEFNEIDANTIETNYDNVVYSFD----DLNLKPNIVRGIFGYGYESPSAIQQRAI-----  53

Query  244  EEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTL  303
                  P  +G   L++A  G   K+     + + +      A +ALI+ P+RELA Q  
Sbjct  54   -----LPITEGRDVLAQAQSG-TGKTATFTISALQRIDENLKATQALILAPTRELALQIQ  107

Query  304  NNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQ  363
            N I     Y++   +     IGG + +D +   ++GV IVVGTPGR+ D++        +
Sbjct  108  NVITHIGLYLN---VTVHASIGGTSMKDDIEAFKSGVQIVVGTPGRVFDMIERRFFRTDK  164

Query  364  VRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIM  423
            V+  ++DEAD +LS G+ + I  +   +P+ T      QV++ SAT+   DV +++ K M
Sbjct  165  VKMFIMDEADEMLSSGFKEQIYNIFRLLPETT------QVVLLSATMP-QDVLEVTTKFM  217

Query  424  HFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPE  483
            + P  + +K ++   + +    + V  +                                
Sbjct  218  NNPVRILVKKDELTLEGIKQFYINVEQED-------------------------------  246

Query  484  MWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCV  543
                     K +          + QA+IFC T+   + L             K   F+  
Sbjct  247  --------FKFDCLCDLYDSISVTQAVIFCNTRSKVEFLTTKL---------KAENFTVS  289

Query  544  CLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI  603
             +H D    +R   +  F+ G  R LI TD+ ARGID+  V  VIN  LP  K+NY+HRI
Sbjct  290  AIHADLPQSDRDTIMNEFRSGSSRILIATDLLARGIDVQQVSLVINYDLPANKENYIHRI  349

Query  604  GRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            GR GR  R G+AI+ V  E   +   +        Y+T+++E
Sbjct  350  GRGGRFGRKGVAINFVTDEDVGMMREIEK-----FYSTQIEE  386


 Score = 96.7 bits (239),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 24/102 (24%), Positives = 45/102 (44%), Gaps = 9/102 (9%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F ++ + P I + +    +  P+ IQ  +I  I  G DVL  A++G+GKT  F+I  +Q
Sbjct  23   SFDDLNLKPNIVRGIFGYGYESPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQ  82

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
             + E LK  Q             +   +  +   +  +   +
Sbjct  83   RIDENLKATQ---------ALILAPTRELALQIQNVITHIGL  115


>sp|A2R0B5|SUB2_ASPNC ATP-dependent RNA helicase sub2 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=sub2 PE=3 SV=1
Length=440

 Score = 294 bits (752),  Expect = 8e-91, Method: Composition-based stats.
 Identities = 105/416 (25%), Positives = 173/416 (42%), Gaps = 74/416 (18%)

Query  232  VLKNAELKFNFGEEEFKFPPKDGFV----------ALSKAPDGYIVKSQHSGNAQVTQTK  281
            +LK   L+    +  F+ P +   V           L +A  G + K+       + Q +
Sbjct  63   LLKEELLR-AITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSG-LGKTAVFVLTTLHQLE  120

Query  282  FLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG--  339
             +P     L++  +RELA Q  N   +F KY+  P ++  +  GG   +  + +L N   
Sbjct  121  PVPGECSILVMCHTRELAYQIKNEYARFSKYL--PDVKTAVFYGGTPIQKDVELLSNKES  178

Query  340  -VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
              +IVVGTPGRL+ LV   KL+L  V+  VLDE D +L       + R   +I + T   
Sbjct  179  YPNIVVGTPGRLNALVRDKKLSLRNVKAFVLDECDKMLD---QIDMRRDVQEIFRATPAD  235

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDS-VPDTVHHVVVPVNPKTDRLWE  457
            K  QV++ SATL S +++ + +K M  P  V +  +       +    + ++        
Sbjct  236  K--QVMMFSATL-SQEIRPVCKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSEAE-----  287

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
                                               K       +   + +Q IIF ++ +
Sbjct  288  -----------------------------------KNRKLNELLDSLEFNQVIIFVKSTL  312

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
              + L++   +           F  + +H      ER +  + FK+ + R  + TDV  R
Sbjct  313  RANELDKLLRE---------CNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGR  363

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE-KEKVWYHVCS  632
            GIDI  +   IN  LP +  +Y+HR+GR GR    GL+IS V+TE  EKV   +  
Sbjct  364  GIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSTEDDEKVLKDIEK  419


 Score = 74.0 bits (180),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 32/63 (51%), Gaps = 0/63 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F +  +  E+ +A+ +  +  P+++Q   IP  +   DVL  A++G GKT  F +  +
Sbjct  57   TGFRDFLLKEELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTL  116

Query  62   QIV  64
              +
Sbjct  117  HQL  119


>sp|Q9LUW5|RH53_ARATH DEAD-box ATP-dependent RNA helicase 53, 
mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RH53 PE=1 SV=1
Length=616

 Score = 299 bits (766),  Expect = 8e-91, Method: Composition-based stats.
 Identities = 107/433 (25%), Positives = 185/433 (43%), Gaps = 70/433 (16%)

Query  212  LGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQH  271
            LG++ EI   + ++ +     ++ A L+                +  ++   G  +    
Sbjct  109  LGISPEIVKALSSKGIEKLFPIQKAVLE--------PAMEGRDMIGRARTGTGKTLAFGI  160

Query  272  SGNAQVTQTKFLPNA---PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
                ++ +          P  L++ P+RELA Q     ++       P L  + + GG  
Sbjct  161  PIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEFRE-----SAPSLDTICLYGGTP  215

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
               Q+  L+ GVD+ VGTPGR+ DL+  G LNLS+V+F+VLDEAD +L  G+++ +  + 
Sbjct  216  IGQQMRQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIIL  275

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
             ++P      ++ Q ++ SAT+ S+ ++ L++K ++ P  VDL G+              
Sbjct  276  EKLP------EKRQSMMFSATMPSW-IRSLTKKYLNNPLTVDLVGDS-------------  315

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
                 +L + +    I  D         P                        +  K  +
Sbjct  316  ---DQKLADGITTYSIIADSYGRASIIGPLVT---------------------EHAKGGK  351

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
             I+F +TK D D L                 F C  LHGD    +R++ L  F+ G    
Sbjct  352  CIVFTQTKRDADRLSYAL----------ARSFKCEALHGDISQSQRERTLAGFRDGHFNI  401

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            L+ TDVAARG+D+  V  +I+  LP+  + +VHR GR GRA + G AI + + ++ +   
Sbjct  402  LVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVK  461

Query  629  HVCSSRGKGCYNT  641
             +    G      
Sbjct  462  IIEREVGSRFTEL  474


 Score = 94.0 bits (232),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 30/139 (22%), Positives = 53/139 (38%), Gaps = 10/139 (7%)

Query  5    SEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIV  64
            SE+G+ PEI +A+          IQ   +   + G D++  A TG+GKT AF IP+I  +
Sbjct  107  SELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKI  166

Query  65   YETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRA  124
               +K   +  +G+  +    +   +            A   D +C            + 
Sbjct  167  ---IKYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRQL  223

Query  125  TKGLMKGKHYYEVSCHDQG  143
              G+       +V+    G
Sbjct  224  DYGV-------DVAVGTPG  235


>sp|Q7Y183|RH10_ORYSJ DEAD-box ATP-dependent RNA helicase 10 OS=Oryza 
sativa subsp. japonica OX=39947 GN=RH10 PE=2 SV=1
Length=472

 Score = 295 bits (755),  Expect = 9e-91, Method: Composition-based stats.
 Identities = 110/457 (24%), Positives = 168/457 (37%), Gaps = 70/457 (15%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
                +LG+  E+              ++   +                 + L +   G  
Sbjct  41   STFAELGVVPELVAACDAMGWKEPTRIQAEAIPHAL--------EGRDLIGLGQTGSGKT  92

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
                     Q    +  P A  A ++ P+RELA Q     +     I    L   +++GG
Sbjct  93   GAFALPII-QALLKQDKPQALFACVLSPTRELAFQIGQQFEALGSAIG---LSCTVLVGG  148

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            V    Q   L     IVVGTPGRL D +  T   +L+++++LVLDEAD LL+  +   ++
Sbjct  149  VDRVQQAVSLAKRPHIVVGTPGRLLDHLTDTKGFSLNKLKYLVLDEADKLLNVEFQKALD  208

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
             + N IP      K  +  + SAT+ +  V KL    +  P  V++  + S  DT+    
Sbjct  209  DILNVIP------KERRTFLFSATMTN-KVSKLQRACLRNPVKVEVASKYSTVDTLRQEF  261

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
              V                                            K  + V  + E  
Sbjct  262  YFVPAD----------------------------------------YKDCFLVHVLNELP  281

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
                +IF RT      L                +F  + + G     +R   L RFK  D
Sbjct  282  GSMIMIFVRTCESTRLLALTLRNL---------RFKAISISGQMSQDKRLGALNRFKTKD  332

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
               LICTDVA+RG+DI GV  VIN  +P   ++YVHR+GR  RA   G A+SLV  + E 
Sbjct  333  CNILICTDVASRGLDIQGVDVVINYDIPMNSKDYVHRVGRTARAGNTGYAVSLV-NQYEA  391

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEI  662
            +W+ +           R  ++    I    +     I
Sbjct  392  MWFKMIEKLLGYEIPDRKVDNAEIMILRERISDSKRI  428


 Score = 105 bits (261),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 39/110 (35%), Positives = 56/110 (51%), Gaps = 8/110 (7%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F+E+GV+PE+  A + M W  PT IQAE+IP  L G D++   +TGSGKTGAF++P+I
Sbjct  41   STFAELGVVPELVAACDAMGWKEPTRIQAEAIPHALEGRDLIGLGQTGSGKTGAFALPII  100

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
            Q + +  K Q              S   +       +  A      GL C
Sbjct  101  QALLKQDKPQ-------ALFACVLSPTRELAFQIGQQFEALGSAI-GLSC  142


>sp|A2XKG2|RH10_ORYSI DEAD-box ATP-dependent RNA helicase 10 OS=Oryza 
sativa subsp. indica OX=39946 GN=RH10 PE=1 SV=1
Length=472

 Score = 295 bits (755),  Expect = 9e-91, Method: Composition-based stats.
 Identities = 110/457 (24%), Positives = 168/457 (37%), Gaps = 70/457 (15%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
                +LG+  E+              ++   +                 + L +   G  
Sbjct  41   STFAELGVVPELVAACDAMGWKEPTRIQAEAIPHAL--------EGRDLIGLGQTGSGKT  92

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
                     Q    +  P A  A ++ P+RELA Q     +     I    L   +++GG
Sbjct  93   GAFALPII-QALLKQDKPQALFACVLSPTRELAFQIGQQFEALGSAIG---LSCTVLVGG  148

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            V    Q   L     IVVGTPGRL D +  T   +L+++++LVLDEAD LL+  +   ++
Sbjct  149  VDRVQQAVSLAKRPHIVVGTPGRLLDHLTDTKGFSLNKLKYLVLDEADKLLNVEFQKALD  208

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
             + N IP      K  +  + SAT+ +  V KL    +  P  V++  + S  DT+    
Sbjct  209  DILNVIP------KERRTFLFSATMTN-KVSKLQRACLRNPVKVEVASKYSTVDTLRQEF  261

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
              V                                            K  + V  + E  
Sbjct  262  YFVPAD----------------------------------------YKDCFLVHVLNELP  281

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
                +IF RT      L                +F  + + G     +R   L RFK  D
Sbjct  282  GSMIMIFVRTCESTRLLALTLRNL---------RFKAISISGQMSQDKRLGALNRFKTKD  332

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
               LICTDVA+RG+DI GV  VIN  +P   ++YVHR+GR  RA   G A+SLV  + E 
Sbjct  333  CNILICTDVASRGLDIQGVDVVINYDIPMNSKDYVHRVGRTARAGNTGYAVSLV-NQYEA  391

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEI  662
            +W+ +           R  ++    I    +     I
Sbjct  392  MWFKMIEKLLGYEIPDRKVDNAEIMILRERISDSKRI  428


 Score = 105 bits (261),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 39/110 (35%), Positives = 56/110 (51%), Gaps = 8/110 (7%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F+E+GV+PE+  A + M W  PT IQAE+IP  L G D++   +TGSGKTGAF++P+I
Sbjct  41   STFAELGVVPELVAACDAMGWKEPTRIQAEAIPHALEGRDLIGLGQTGSGKTGAFALPII  100

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
            Q + +  K Q              S   +       +  A      GL C
Sbjct  101  QALLKQDKPQ-------ALFACVLSPTRELAFQIGQQFEALGSAI-GLSC  142


>sp|Q7MGP7|RHLB_VIBVY ATP-dependent RNA helicase RhlB OS=Vibrio 
vulnificus (strain YJ016) OX=196600 GN=rhlB PE=3 SV=1
Length=435

 Score = 293 bits (751),  Expect = 9e-91, Method: Composition-based stats.
 Identities = 112/493 (23%), Positives = 192/493 (39%), Gaps = 81/493 (16%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
              DLGL  ++   ++ +       ++   L      ++            ++   G  + 
Sbjct  11   FADLGLNPQVVEGLEKKGFEFCTPIQALALPVLLSGQD--------IAGQAQTGTGKTLA  62

Query  269  SQHSG----NAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
               +               P  P+A+I+ P+RELA Q  N+ +     I +  ++  L  
Sbjct  63   FLTATFNHLLTTHAHEGRQPTQPRAIIMAPTRELAIQIYNDAEPL---IASTGIKAALAY  119

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG +   QL+ L+ GVD+++GT GR+ D       NL+ ++ +VLDEAD +   G+   I
Sbjct  120  GGESYDKQLAKLQGGVDVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDI  179

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-H  443
              +  ++P      +    ++ SATL S+ V++L+ + MH P  V ++ E      +   
Sbjct  180  RFLFRRMPA----PQERLNMLFSATL-SYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEE  234

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
            +  P N     L + L                                         I+E
Sbjct  235  LFYPSNEDKMALLQTL-----------------------------------------IEE  253

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
               D+AIIF  TK  C+++  +    G              L GD    +R++ LE+F +
Sbjct  254  EWPDRAIIFANTKYKCESIWAHLAADG---------HRVGLLTGDVPQKKREKILEQFTQ  304

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
            G V  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +IS    + 
Sbjct  305  GSVDLLVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEDY  364

Query  624  EKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDE  683
                  +              E       Y+   L+ ++   +    ++ +         
Sbjct  365  AINLPAIEE----------YIEHTIPVSDYDSSALIQDLPAPVRTPSARNQQRRTNTGGA  414

Query  684  FDGKVTYGQKRAA  696
              G      +R  
Sbjct  415  RSGDRKSNNRRPR  427


 Score = 105 bits (261),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 60/352 (17%), Positives = 116/352 (33%), Gaps = 58/352 (16%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+++G+ P++ + +E+  +   T IQA ++P++L G D+   A+TG+GKT AF       
Sbjct  11   FADLGLNPQVVEGLEKKGFEFCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +  T     EG++         +   +  +  Y+               +  +    G +
Sbjct  71   LLTT--HAHEGRQPTQPRAIIMAPTRELAIQIYN--------------DAEPLIASTGIK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
            A      G+ Y +     QG            + +GT                +  D Y 
Sbjct  115  AALA-YGGESYDKQLAKLQG---------GVDVLIGTTG--------------RIIDFYK  150

Query  184  EE-FTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFE---IPPHMKNQALFPACVLKNAEL  238
            +  F +++     LD  +    F     KD+   F     P    N         +  EL
Sbjct  151  QRVFNLNNIQAVVLD--EADRMFDLGFIKDIRFLFRRMPAPQERLNMLFSATLSYRVQEL  208

Query  239  KFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSREL  298
             F           +       +  +     S     A +          +A+I   ++  
Sbjct  209  AFEHMHNPEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQTLIEEEWPDRAIIFANTK--  266

Query  299  AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                    +    ++     R  L+ G V  + +  +LE      VD++V T
Sbjct  267  -----YKCESIWAHLAADGHRVGLLTGDVPQKKREKILEQFTQGSVDLLVAT  313


>sp|Q7SEL0|PRP28_NEUCR Pre-mRNA-splicing ATP-dependent RNA helicase 
prp-28 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A 
/ CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=prp-28 
PE=3 SV=1
Length=728

 Score = 302 bits (774),  Expect = 9e-91, Method: Composition-based stats.
 Identities = 105/478 (22%), Positives = 181/478 (38%), Gaps = 89/478 (19%)

Query  217  EIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQ  276
             +   +KN        ++ A +                 + ++    G            
Sbjct  303  RLLDIVKNVGYDEPTPIQRAAIPIAL--------QARDLIGVAVTGSGKTAAFLLPLLVY  354

Query  277  VTQTKFL-----PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARD  331
            +++   L      + P ALI+ P+REL +Q  +  K+F   +       + I+GG +  +
Sbjct  355  ISELPPLTEYNKNDGPYALILAPTRELVQQIESEAKKFATPLG---FTVVSIVGGHSLEE  411

Query  332  QLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQI  391
            Q   L NG +I+V TPGRL D +    L  SQ  + ++DEAD ++ QG+ + + ++ + +
Sbjct  412  QAFALRNGAEIIVATPGRLVDCLERRLLVFSQCCYTIMDEADRMIDQGFEEPLTKILDAM  471

Query  392  PQVTSDG-------------------KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            P                         +  Q ++ +AT+    V+++++K +  P  V + 
Sbjct  472  PVTNEKPDTDDAENPQLMSRYVDGKDRYRQTMMYTATMPPI-VERIAKKYLRRPAIVTIG  530

Query  433  GEDSVPDTVHHVVVPV---NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAI  489
                  DTV   V  V   + +  RL E L     +                        
Sbjct  531  NAGEAVDTVEQRVEFVSGEDKRKKRLQEILNSGQFKPP----------------------  568

Query  490  KILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDR  549
                                I+F   K +CD + +         D KG  +S V LHG +
Sbjct  569  -------------------IIVFVNIKRNCDMVAR---------DIKGMGYSAVTLHGSK  600

Query  550  KPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA  609
               +R+  L   + G    L+ TD+A RGID+  V  V+N  +    ++Y HRIGR GRA
Sbjct  601  TQEQREAALASLRNGQTDILVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRTGRA  660

Query  610  ERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLN  667
             + G+AI+ +  E   V Y +     K   +    E        N+ Q   +  E  N
Sbjct  661  GKSGVAITFLGPEDNDVLYDLRQIISKSSISKVPDELRRHEAAQNKPQKGQKKLEESN  718


 Score = 106 bits (265),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 44/103 (43%), Gaps = 1/103 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M ++ E  +   +   V+ + +  PT IQ  +IP+ L   D++  A TGSGKT AF +P+
Sbjct  292  MRSWEESTLPRRLLDIVKNVGYDEPTPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPL  351

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
            +  + E L    E  K         +   +           FA
Sbjct  352  LVYISE-LPPLTEYNKNDGPYALILAPTRELVQQIESEAKKFA  393


>sp|P39517|DHH1_YEAST ATP-dependent RNA helicase DHH1 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DHH1 
PE=1 SV=1
Length=506

 Score = 296 bits (757),  Expect = 9e-91, Method: Composition-based stats.
 Identities = 108/447 (24%), Positives = 173/447 (39%), Gaps = 71/447 (16%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             +D  L  E+   +          ++   +               G   L++A +G   K
Sbjct  48   FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAIT----------GRDILARAKNG-TGK  96

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
            +       + + K   N  +ALI+ P+RELA QT   ++   K+     +  ++  GG  
Sbjct  97   TAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCG---ISCMVTTGGTN  153

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
             RD +  L   V I+VGTPGR+ DL S    +LS     ++DEAD +LS+ +   I ++ 
Sbjct  154  LRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQIL  213

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
            + +P         Q ++ SAT     VK+   K +H P  ++L  E+     +      V
Sbjct  214  SFLP------PTHQSLLFSATFP-LTVKEFMVKHLHKPYEINLM-EELTLKGITQYYAFV  265

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
              +                                         K         + +++Q
Sbjct  266  EERQ----------------------------------------KLHCLNTLFSKLQINQ  285

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
            AIIFC +    + L +     G         +SC   H   K  ER +    F++G VR 
Sbjct  286  AIIFCNSTNRVELLAKKITDLG---------YSCYYSHARMKQQERNKVFHEFRQGKVRT  336

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            L+C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR   +GLAI+L+        Y
Sbjct  337  LVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLY  396

Query  629  HVCSSRGKGCYNTRLKEDGGCTIWYNE  655
             +    G          D    +  N+
Sbjct  397  KIEQELGTEIAAIPATIDKSLYVAEND  423


 Score = 99.0 bits (245),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 9/92 (10%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F +  +  E+   + E  +  P+ IQ E+IP+ + G D+L  A+ G+GKT AF IP ++
Sbjct  47   TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLE  106

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
             V   L   Q                 +  + 
Sbjct  107  KVKPKLNKIQ---------ALIMVPTRELALQ  129


>sp|A6ZXG9|DHH1_YEAS7 ATP-dependent RNA helicase DHH1 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DHH1 PE=3 SV=1
Length=506

 Score = 296 bits (757),  Expect = 9e-91, Method: Composition-based stats.
 Identities = 108/447 (24%), Positives = 173/447 (39%), Gaps = 71/447 (16%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             +D  L  E+   +          ++   +               G   L++A +G   K
Sbjct  48   FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAIT----------GRDILARAKNG-TGK  96

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
            +       + + K   N  +ALI+ P+RELA QT   ++   K+     +  ++  GG  
Sbjct  97   TAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCG---ISCMVTTGGTN  153

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
             RD +  L   V I+VGTPGR+ DL S    +LS     ++DEAD +LS+ +   I ++ 
Sbjct  154  LRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQIL  213

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
            + +P         Q ++ SAT     VK+   K +H P  ++L  E+     +      V
Sbjct  214  SFLP------PTHQSLLFSATFP-LTVKEFMVKHLHKPYEINLM-EELTLKGITQYYAFV  265

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
              +                                         K         + +++Q
Sbjct  266  EERQ----------------------------------------KLHCLNTLFSKLQINQ  285

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
            AIIFC +    + L +     G         +SC   H   K  ER +    F++G VR 
Sbjct  286  AIIFCNSTNRVELLAKKITDLG---------YSCYYSHARMKQQERNKVFHEFRQGKVRT  336

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            L+C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR   +GLAI+L+        Y
Sbjct  337  LVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLY  396

Query  629  HVCSSRGKGCYNTRLKEDGGCTIWYNE  655
             +    G          D    +  N+
Sbjct  397  KIEQELGTEIAAIPATIDKSLYVAEND  423


 Score = 99.0 bits (245),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 9/92 (10%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F +  +  E+   + E  +  P+ IQ E+IP+ + G D+L  A+ G+GKT AF IP ++
Sbjct  47   TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLE  106

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
             V   L   Q                 +  + 
Sbjct  107  KVKPKLNKIQ---------ALIMVPTRELALQ  129


>sp|A7TGU7|DHH1_VANPO ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=DHH1 PE=3 SV=1
Length=484

 Score = 295 bits (755),  Expect = 1e-90, Method: Composition-based stats.
 Identities = 107/427 (25%), Positives = 170/427 (40%), Gaps = 71/427 (17%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             +D  L  E+   +          ++   +               G   L++A +G   K
Sbjct  36   FEDFYLKRELLMGIFEAGFEKPSPIQEESIPVAL----------AGRDILARAKNG-TGK  84

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
            +       + + K   N  +ALI+ P+RELA QT   ++   K+     +  ++  GG  
Sbjct  85   TAAFVIPTLEKVKSKHNKIQALIMVPTRELALQTSQVVRTLGKHCG---ISCMVTTGGTN  141

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
             RD +  L   V I+VGTPGR+ DL S    +LS+    ++DEAD +LS+ +   I ++ 
Sbjct  142  LRDDILRLNETVHILVGTPGRVLDLASRKVADLSECNLFIMDEADKMLSRDFKSIIEQIL  201

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
              +P      K  Q ++ SAT     VK+     +H P  ++L  E ++   +      V
Sbjct  202  VFLP------KNHQSLLFSATFP-LSVKEFMVNHLHKPYEINLMDELTLK-GITQYYAFV  253

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
              K                                         K         + +++Q
Sbjct  254  EEKQ----------------------------------------KLHCLNTLFSKLQINQ  273

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
            AIIFC +    + L +     G         +SC   H   K  ER +    F++G VR 
Sbjct  274  AIIFCNSTNRVELLAKKITDLG---------YSCYYSHARMKQQERNRVFHEFRQGKVRT  324

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            L+C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR   +GLAI+L+        Y
Sbjct  325  LVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLY  384

Query  629  HVCSSRG  635
             +    G
Sbjct  385  KIEQELG  391


 Score = 99.4 bits (246),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 9/92 (10%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F +  +  E+   + E  +  P+ IQ ESIP+ L G D+L  A+ G+GKT AF IP ++
Sbjct  35   TFEDFYLKRELLMGIFEAGFEKPSPIQEESIPVALAGRDILARAKNGTGKTAAFVIPTLE  94

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
             V       Q                 +  + 
Sbjct  95   KVKSKHNKIQ---------ALIMVPTRELALQ  117


>sp|Q4HW67|DHH1_GIBZE ATP-dependent RNA helicase DHH1 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=DHH1 PE=3 SV=1
Length=486

 Score = 295 bits (755),  Expect = 1e-90, Method: Composition-based stats.
 Identities = 113/444 (25%), Positives = 178/444 (40%), Gaps = 68/444 (15%)

Query  213  GLAFE--IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            GL FE           +F A   K + +     +EE       G   L++A +G   K+ 
Sbjct  41   GLEFENFALKRDLLMGIFEAGFEKPSPI-----QEESIPVALTGRDILARAKNG-TGKTA  94

Query  271  HSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
                  + +     +  + LI+ P+RELA QT    K   K++    +  ++  GG   R
Sbjct  95   AFVIPTLERINPKISKIQCLILVPTRELAMQTSQVCKTLGKHLG---INVMVTTGGTGLR  151

Query  331  DQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ  390
            D +  L++ V IVVGTPGR+ DL      +LS+    ++DEAD LLS  ++  I ++   
Sbjct  152  DDIIRLQDPVHIVVGTPGRILDLAGKNVADLSECPMFIMDEADKLLSIEFTPVIEQLLQF  211

Query  391  IPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNP  450
             P      K  QV++ SAT     VK  S+K M  P  ++L  ++     +      V  
Sbjct  212  HP------KDRQVMLFSATFP-LSVKDFSDKNMVSPYEINLM-DELTLRGITQYYAFVEE  263

Query  451  KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAI  510
            K                                         K         + +++Q+I
Sbjct  264  KQ----------------------------------------KVHCLNTLFSKLQINQSI  283

Query  511  IFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLI  570
            IFC +    + L +   + G         +SC   H   + H R +    F+ G  R L+
Sbjct  284  IFCNSTNRVELLAKKITELG---------YSCFYSHAKMQQHARNRVFHDFRNGVCRNLV  334

Query  571  CTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
            C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR   +GLAI+L+  +     Y++
Sbjct  335  CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLINWDDRFNLYNI  394

Query  631  CSSRGKGCYNTRLKEDGGCTIWYN  654
                G          D    ++ N
Sbjct  395  ERDLGTEIQPIPASIDKSLYVYEN  418


 Score = 98.7 bits (244),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 39/91 (43%), Gaps = 9/91 (10%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F    +  ++   + E  +  P+ IQ ESIP+ L G D+L  A+ G+GKT AF IP ++ 
Sbjct  44   FENFALKRDLLMGIFEAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVIPTLER  103

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
            +   +   Q                 +  M 
Sbjct  104  INPKISKIQ---------CLILVPTRELAMQ  125


>sp|P32892|DRS1_YEAST ATP-dependent RNA helicase DRS1 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DRS1 
PE=1 SV=2
Length=752

 Score = 303 bits (775),  Expect = 1e-90, Method: Composition-based stats.
 Identities = 104/539 (19%), Positives = 204/539 (38%), Gaps = 70/539 (13%)

Query  199  DKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVAL  258
            D+   +  +N   L L+  +   + +        +++A +                 +A 
Sbjct  223  DEAKKQMYENFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIAL--------LGKDIIAG  274

Query  259  SKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKL  318
            +    G           ++        + + +++ P+RELA Q  +  KQ  +++    +
Sbjct  275  AVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSG--I  332

Query  319  RELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLS  377
               L +GG+  R Q  +L++  DIV+ TPGR  D + ++   N+  V  LV+DEAD +L 
Sbjct  333  TFGLAVGGLNLRQQEQMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLE  392

Query  378  QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSV  437
            +G+ D +N +   +P         Q ++ SAT++S  +K L    +  P  + +      
Sbjct  393  EGFQDELNEIMGLLP------SNRQNLLFSATMNS-KIKSLVSLSLKKPVRIMIDPPKKA  445

Query  438  PDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYA  497
               +    V +  +       L                                      
Sbjct  446  ATKLTQEFVRIRKRDHLKPALLFN-----------------------------------L  470

Query  498  VRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQN  557
            +R +      + ++F   K     L       G          S   LHG     +R  +
Sbjct  471  IRKLDPTGQKRIVVFVARKETAHRLRIIMGLLG---------MSVGELHGSLTQEQRLDS  521

Query  558  LERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAIS  617
            + +FK  +V  LICTD+A+RG+DI  +  VIN  +P   + Y+HR+GR  RA R G +++
Sbjct  522  VNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVT  581

Query  618  LV--ATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEP  675
             V  +++   +      S  +    T+ K  G    W  +++  +++ E +N TI  +  
Sbjct  582  FVGESSQDRSIVRAAIKSVEENKSLTQGKALGRNVDWV-QIEETNKLVESMNDTIEDILV  640

Query  676  DIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKEAQTSFLHLGYLPN  734
            + K        ++   + +   G +   H   +    +      +  + +   LG L  
Sbjct  641  EEKEE-----KEILRAEMQLRKGENMLKHKKEIQARPRRTWFQSESDKKNSKVLGALSR  694


 Score = 101 bits (252),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 6/106 (6%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+ + +   + + +  + ++ P+ IQ+ +IP+ L G D++  A TGSGKT AF IP+I+ 
Sbjct  233  FNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIER  292

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGL  109
            +           K  +T         +  +   D G   A    G+
Sbjct  293  LLYKP------AKIASTRVIVLLPTRELAIQVADVGKQIARFVSGI  332


>sp|Q4WCW2|SUB2_ASPFU ATP-dependent RNA helicase sub2 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=sub2 PE=3 SV=1
Length=448

 Score = 294 bits (752),  Expect = 1e-90, Method: Composition-based stats.
 Identities = 102/386 (26%), Positives = 163/386 (42%), Gaps = 64/386 (17%)

Query  256  VALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDN  315
              L +A  G + K+       + Q + +P     L++  +RELA Q  N   +F KY+  
Sbjct  97   DVLCQAKSG-LGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYL--  153

Query  316  PKLRELLIIGGVAARDQLSVLENG---VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
            P ++  +  GG   +  + VL N     +IVVGTPGRL+ LV   KL+L  V+  VLDE 
Sbjct  154  PDVKTAVFYGGTPIQKDIEVLSNKESYPNIVVGTPGRLNALVREKKLSLRNVKAFVLDEC  213

Query  373  DGLLSQ-GYSDFI---NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTW  428
            D +L Q G    I    R   +I + T   K  QV++ SATL S +++ + +K M  P  
Sbjct  214  DKMLDQIGKQAQIAHMRRDVQEIFRATPADK--QVMMFSATL-SQEIRPICKKFMRNPLE  270

Query  429  VDLKGEDS-VPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSE  487
            V +  +       +    + ++                                      
Sbjct  271  VYVDDDTKLTLHGLQQYYIKLSESE-----------------------------------  295

Query  488  AIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHG  547
                 K       +   + +Q IIF ++ +  + L++   +           F  + +H 
Sbjct  296  -----KNRKLNELLDSLEFNQVIIFVKSTLRANELDKLLRE---------CNFPSIAVHS  341

Query  548  DRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVG  607
                 ER +  + FK+ + R  + TDV  RGIDI  +   IN  LP +  +Y+HR+GR G
Sbjct  342  GVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAG  401

Query  608  RAERMGLAISLV-ATEKEKVWYHVCS  632
            R    GL+IS V + E EKV   +  
Sbjct  402  RFGTKGLSISFVSSEEDEKVLKEIEK  427


 Score = 71.3 bits (173),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 32/63 (51%), Gaps = 0/63 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F +  +  E+ +A+ +  +  P+++Q   IP  +   DVL  A++G GKT  F +  +
Sbjct  58   TGFRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTL  117

Query  62   QIV  64
              +
Sbjct  118  HQL  120


>sp|A7A0P8|DRS1_YEAS7 ATP-dependent RNA helicase DRS1 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DRS1 PE=3 SV=1
Length=754

 Score = 303 bits (775),  Expect = 1e-90, Method: Composition-based stats.
 Identities = 104/539 (19%), Positives = 204/539 (38%), Gaps = 70/539 (13%)

Query  199  DKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVAL  258
            D+   +  +N   L L+  +   + +        +++A +                 +A 
Sbjct  225  DEAKKQMYENFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIAL--------LGKDIIAG  276

Query  259  SKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKL  318
            +    G           ++        + + +++ P+RELA Q  +  KQ  +++    +
Sbjct  277  AVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSG--I  334

Query  319  RELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLS  377
               L +GG+  R Q  +L++  DIV+ TPGR  D + ++   N+  V  LV+DEAD +L 
Sbjct  335  TFGLAVGGLNLRQQEQMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLE  394

Query  378  QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSV  437
            +G+ D +N +   +P         Q ++ SAT++S  +K L    +  P  + +      
Sbjct  395  EGFQDELNEIMGLLP------SNRQNLLFSATMNS-KIKSLVSLSLKKPVRIMIDPPKKA  447

Query  438  PDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYA  497
               +    V +  +       L                                      
Sbjct  448  ATKLTQEFVRIRKRDHLKPALLFN-----------------------------------L  472

Query  498  VRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQN  557
            +R +      + ++F   K     L       G          S   LHG     +R  +
Sbjct  473  IRKLDPTGQKRIVVFVARKETAHRLRIIMGLLG---------MSVGELHGSLTQEQRLDS  523

Query  558  LERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAIS  617
            + +FK  +V  LICTD+A+RG+DI  +  VIN  +P   + Y+HR+GR  RA R G +++
Sbjct  524  VNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVT  583

Query  618  LV--ATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEP  675
             V  +++   +      S  +    T+ K  G    W  +++  +++ E +N TI  +  
Sbjct  584  FVGESSQDRSIVRAAIKSVEENKSLTQGKALGRNVDWV-QIEETNKLVESMNDTIEDILV  642

Query  676  DIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKEAQTSFLHLGYLPN  734
            + K        ++   + +   G +   H   +    +      +  + +   LG L  
Sbjct  643  EEKEE-----KEILRAEMQLRKGENMLKHKKEIQARPRRTWFQSESDKKNSKVLGALSR  696


 Score = 101 bits (252),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 6/106 (6%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+ + +   + + +  + ++ P+ IQ+ +IP+ L G D++  A TGSGKT AF IP+I+ 
Sbjct  235  FNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIER  294

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGL  109
            +           K  +T         +  +   D G   A    G+
Sbjct  295  LLYKP------AKIASTRVIVLLPTRELAIQVADVGKQIARFVSGI  334


>sp|A5A6N4|IF4A1_PANTR Eukaryotic initiation factor 4A-I OS=Pan 
troglodytes OX=9598 GN=EIF4A1 PE=2 SV=1
Length=406

 Score = 292 bits (748),  Expect = 1e-90, Method: Composition-based stats.
 Identities = 113/428 (26%), Positives = 186/428 (43%), Gaps = 74/428 (17%)

Query  228  FPACVLKNAELK--FNFGEEEFK-------FPPKDGFVALSKAPDGYIVKSQHSGNAQVT  278
            F    L  + L+  + +G E+          P   G+  +++A  G   K+     + + 
Sbjct  34   FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSG-TGKTATFAISILQ  92

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            Q +    A +AL++ P+RELA+Q    +     Y+          IGG   R ++  L+ 
Sbjct  93   QIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGAS---CHACIGGTNVRAEVQKLQM  149

Query  339  G-VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD  397
                I+VGTPGR+ D+++   L+   ++  VLDEAD +LS+G+ D I  +  ++      
Sbjct  150  EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKL------  203

Query  398  GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWE  457
                QV++ SAT+ S DV ++++K M  P  + +K E+   + +    + V  +  +L  
Sbjct  204  NSNTQVVLLSATMPS-DVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKL--  260

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
                                              L   Y    I      QA+IF  T+ 
Sbjct  261  --------------------------------DTLCDLYETLTIT-----QAVIFINTRR  283

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
              D L +               F+   +HGD    ER   +  F+ G  R LI TD+ AR
Sbjct  284  KVDWLTEKM---------HARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLAR  334

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
            GID+  V  VIN  LP  ++NY+HRIGR GR  R G+ I++V  E ++    +     + 
Sbjct  335  GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVTINMVTEEDKRTLRDI-----ET  389

Query  638  CYNTRLKE  645
             YNT ++E
Sbjct  390  FYNTSIEE  397


 Score = 95.6 bits (236),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 52/131 (40%), Gaps = 3/131 (2%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F +M +   + + +    +  P+ IQ  +I   + G DV+  A++G+GKT  F+I +
Sbjct  31   VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISI  90

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI---GSDGLCCQSREVK  117
            +Q +   LK  Q      T             +  Y   S  A     +     Q  +++
Sbjct  91   LQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQME  150

Query  118  EWHGCRATKGL  128
              H    T G 
Sbjct  151  APHIIVGTPGR  161


>sp|A1C5V3|DBP3_ASPCL ATP-dependent RNA helicase dbp3 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp3 PE=3 SV=1
Length=503

 Score = 295 bits (756),  Expect = 1e-90, Method: Composition-based stats.
 Identities = 107/404 (26%), Positives = 168/404 (42%), Gaps = 65/404 (16%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVT---QTKFLPNAPKALIVEPSRELAEQTL  303
                     + +++   G  +        ++    + KF    P A+I+ P+RELA Q  
Sbjct  117  PLLFAGRDVIGIAETGSGKTLAFGLPCLKKILDSGKIKFKNARPAAVIISPTRELAMQIY  176

Query  304  NNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQ  363
            +   Q  KY  +  ++   I GGV   +Q   L++   IVV TPGRL DL + G ++L +
Sbjct  177  D---QISKYAGSIGIKATCIFGGVKKDEQREALKSAA-IVVATPGRLKDLQNDGSVDLGK  232

Query  364  VRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIM  423
            V++LVLDEAD +L +G+   I  + +  P       + Q ++ +AT     V+ L+   M
Sbjct  233  VKYLVLDEADRMLDKGFEQDIKDIISSTPD-----SKRQTVMFTATWPP-SVRDLAATFM  286

Query  424  HFPTWVDLKGEDS----VPDTVHHVVVPVNP--KTDRLWERLGKSHIRTDDVHAKDNTRP  477
                 V + G+ S        +   V  V    K  RL + L ++      +        
Sbjct  287  TSAVTVTIGGDPSADPRANTRIKQTVEVVQSHDKEYRLVQLLSENQRGAAAL--------  338

Query  478  GANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKG  537
                                         D+ ++FC  K +   +E+           + 
Sbjct  339  -----------------------------DKVLVFCLYKKEAMRVERLL---------RN  360

Query  538  HQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQ  597
              F    +HGD   HER ++L+ FK G    L+ TDVAARG+DI  V  VINVT P   +
Sbjct  361  KNFKVAGIHGDLNQHERFKSLDAFKSGAATVLVATDVAARGLDIPSVKLVINVTFPLTVE  420

Query  598  NYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
            +YVHRIGR GRA   G AI+L     +     + +         
Sbjct  421  DYVHRIGRTGRAGAEGRAITLFTETDKAQSGALINVLKAAKQEV  464


 Score = 106 bits (264),  Expect = 9e-23, Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 65/142 (46%), Gaps = 16/142 (11%)

Query  1    MAAFSEMG-VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
            + +FS +     ++  ++    +  PT IQ+ + PL+  G DV+  AETGSGKT AF +P
Sbjct  85   IISFSHLPSCDSKLYSSLSS--FASPTPIQSATWPLLFAGRDVIGIAETGSGKTLAFGLP  142

Query  60   VIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA--IGSDGLCC------  111
             ++ + ++ K + +  +    I    S   +  M  YD+ S +A  IG    C       
Sbjct  143  CLKKILDSGKIKFKNARPAAVI---ISPTRELAMQIYDQISKYAGSIGIKATCIFGGVKK  199

Query  112  --QSREVKEWHGCRATKGLMKG  131
              Q   +K      AT G +K 
Sbjct  200  DEQREALKSAAIVVATPGRLKD  221


>sp|Q6LLL5|RHLB_PHOPR ATP-dependent RNA helicase RhlB OS=Photobacterium 
profundum (strain SS9) OX=298386 GN=rhlB PE=3 SV=1
Length=437

 Score = 293 bits (751),  Expect = 1e-90, Method: Composition-based stats.
 Identities = 121/494 (24%), Positives = 192/494 (39%), Gaps = 84/494 (17%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
              DLGL   +   +  Q       ++   L      ++            ++   G  + 
Sbjct  11   FADLGLEPTVLEGLDAQGFHYCTPIQALALPVVLTGQD--------IAGQAQTGTGKTLA  62

Query  269  SQHSGNAQVTQTKFLP----NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
               +    +           N P+A+I+ P+RELA Q  N+       + +  L+  L  
Sbjct  63   FLTATFNYLLLNPASDERKTNQPRAIIMAPTRELAIQIYNDAAPL---LASTGLKAGLAY  119

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG A   Q  V   GVDI++GT GR+ D      ++L+ ++ +VLDEAD +   G+   I
Sbjct  120  GGEAYEKQQKVFAEGVDILIGTCGRIIDFYKQRVIDLASIQVVVLDEADRMFDLGFIKDI  179

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-H  443
              +  ++P      K    ++ SATL S+ VK+L+ + M+ P  V ++        +   
Sbjct  180  RFLFRRMPA----PKARLNMLFSATL-SYRVKELAFEHMNSPESVVVEPNQKTGHLIQEE  234

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
            +  P N +  RL + L                                         I+E
Sbjct  235  LFYPSNQEKMRLLQTL-----------------------------------------IEE  253

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
               D+AIIF  TK  C+++  +                   L+GD    +R + LE+F +
Sbjct  254  EWPDRAIIFANTKHRCEDIWGHL---------AADNHRVGLLNGDVPQKKRVRILEQFTQ  304

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
            GD+  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +IS    E 
Sbjct  305  GDIDILVATDVAARGLHIPQVTHVYNYDLPDDAEDYVHRIGRTGRAGESGSSISFACEEY  364

Query  624  EKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDE  683
                  +              E       YN   LL E+   L    +  +   + P   
Sbjct  365  AINLPAIE----------TYIEHPIPLSKYNSEALLDELPAPLRLQRTPRQGGNRRPNGN  414

Query  684  FDGKVTYGQKRAAG  697
              G+   GQ R   
Sbjct  415  RQGQ---GQSRPRN  425


 Score = 99.8 bits (247),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 56/357 (16%), Positives = 119/357 (33%), Gaps = 68/357 (19%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+++G+ P + + ++   +   T IQA ++P++L G D+   A+TG+GKT AF       
Sbjct  11   FADLGLEPTVLEGLDAQGFHYCTPIQALALPVVLTGQDIAGQAQTGTGKTLAFLTATFNY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +   L    + +K         +   +  +  Y+               +  +    G +
Sbjct  71   LL--LNPASDERKTNQPRAIIMAPTRELAIQIYN--------------DAAPLLASTGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
            A        +  +     +G+           + +GT                +  D Y 
Sbjct  115  AGLAYGGEAYEKQQKVFAEGV----------DILIGT--------------CGRIIDFYK  150

Query  184  EEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFE---IPPHMKNQALFPACVLKNAELK  239
            +      +I   + +D+    F     KD+   F     P    N         +  EL 
Sbjct  151  QRVIDLASIQVVV-LDEADRMFDLGFIKDIRFLFRRMPAPKARLNMLFSATLSYRVKELA  209

Query  240  FNFGEEEFKFPPKDGFVALSKAPDGYIVK-----SQHSGNAQVTQTKFLPNAP-KALIVE  293
            F           +           G++++       +    ++ QT      P +A+I  
Sbjct  210  FEHMNSPESVVVE------PNQKTGHLIQEELFYPSNQEKMRLLQTLIEEEWPDRAIIFA  263

Query  294  PSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
             ++       +  +    ++     R  L+ G V  + ++ +LE      +DI+V T
Sbjct  264  NTK-------HRCEDIWGHLAADNHRVGLLNGDVPQKKRVRILEQFTQGDIDILVAT  313


>sp|Q8DDN6|RHLB_VIBVU ATP-dependent RNA helicase RhlB OS=Vibrio 
vulnificus (strain CMCP6) OX=216895 GN=rhlB PE=3 SV=1
Length=435

 Score = 293 bits (750),  Expect = 1e-90, Method: Composition-based stats.
 Identities = 113/493 (23%), Positives = 194/493 (39%), Gaps = 81/493 (16%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
              DLGL  ++   ++ +       ++   L      ++            ++   G  + 
Sbjct  11   FADLGLNPQVVEGLEKKGFEFCTPIQALALPVLLSGQD--------IAGQAQTGTGKTLA  62

Query  269  SQHSGNAQVTQTKF----LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
               +    +  T       P  P+A+I+ P+RELA Q  N+ +     I +  ++  L  
Sbjct  63   FLTATFNHLLTTPAHEGRQPTQPRAIIMAPTRELAIQIYNDAEPL---IASTGIKAALAY  119

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG +   QL+ L+ GVD+++GT GR+ D       NL+ ++ +VLDEAD +   G+   I
Sbjct  120  GGESYDKQLTKLQGGVDVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDI  179

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-H  443
              +  ++P      +    ++ SATL S+ V++L+ + MH P  V ++ E      +   
Sbjct  180  RFLFRRMPA----PQERLNMLFSATL-SYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEE  234

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
            +  P N     L + L                                         I+E
Sbjct  235  LFYPSNEDKMALLQTL-----------------------------------------IEE  253

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
               D+AIIF  TK  C+++  +    G              L GD    +R++ LE+F +
Sbjct  254  EWPDRAIIFANTKYKCESIWAHLAADG---------HRVGLLTGDVPQKKREKILEQFTQ  304

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
            G V  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G +IS    + 
Sbjct  305  GSVDLLVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEDY  364

Query  624  EKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDE  683
                  +              E       Y+   L+ ++   +    ++ +         
Sbjct  365  AINLPAIEE----------YIEHTIPVSDYDSSALIQDLPAPVRTPSARNQQRRTNTGGA  414

Query  684  FDGKVTYGQKRAA  696
              G      +R  
Sbjct  415  RSGDRKSNNRRPR  427


 Score = 104 bits (259),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 60/352 (17%), Positives = 116/352 (33%), Gaps = 58/352 (16%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+++G+ P++ + +E+  +   T IQA ++P++L G D+   A+TG+GKT AF       
Sbjct  11   FADLGLNPQVVEGLEKKGFEFCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +  T     EG++         +   +  +  Y+               +  +    G +
Sbjct  71   LLTTPAH--EGRQPTQPRAIIMAPTRELAIQIYN--------------DAEPLIASTGIK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
            A      G+ Y +     QG            + +GT                +  D Y 
Sbjct  115  AALA-YGGESYDKQLTKLQG---------GVDVLIGTTG--------------RIIDFYK  150

Query  184  EE-FTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFE---IPPHMKNQALFPACVLKNAEL  238
            +  F +++     LD  +    F     KD+   F     P    N         +  EL
Sbjct  151  QRVFNLNNIQAVVLD--EADRMFDLGFIKDIRFLFRRMPAPQERLNMLFSATLSYRVQEL  208

Query  239  KFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSREL  298
             F           +       +  +     S     A +          +A+I   ++  
Sbjct  209  AFEHMHNPEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQTLIEEEWPDRAIIFANTK--  266

Query  299  AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                    +    ++     R  L+ G V  + +  +LE      VD++V T
Sbjct  267  -----YKCESIWAHLAADGHRVGLLTGDVPQKKREKILEQFTQGSVDLLVAT  313


>sp|B1JQ11|RHLB_YERPY ATP-dependent RNA helicase RhlB OS=Yersinia 
pseudotuberculosis serotype O:3 (strain YPIII) OX=502800 
GN=rhlB PE=3 SV=1
Length=428

 Score = 293 bits (750),  Expect = 1e-90, Method: Composition-based stats.
 Identities = 112/407 (28%), Positives = 173/407 (43%), Gaps = 63/407 (15%)

Query  257  ALSKAPDGYIVKSQHSGNAQVTQTKFLP----NAPKALIVEPSRELAEQTLNNIKQFKKY  312
              ++   G  +    S    +           N P+ALI+ P+RELA Q  ++ +   + 
Sbjct  51   GQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQ-  109

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
                 L+  L  GG     QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEA
Sbjct  110  --VTGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEA  167

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D +   G+   I  +  ++P V     +   ++ SATL S+ V++L+ + M+   +V+++
Sbjct  168  DRMYDLGFIKDIRWLFRRMPSV----DKRLNMLFSATL-SYRVRELAFEQMNNAEYVEVE  222

Query  433  GEDSVPDTVH-HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
                    +   +  P N +  RL + L                                
Sbjct  223  PLQKTGHRIKEELFYPSNEEKMRLLQTL--------------------------------  250

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
                     I+E   D+ IIF  TK  C+ +  +    G              L GD   
Sbjct  251  ---------IEEEWPDRCIIFANTKHRCEEIWGHLAADG---------HRVGLLTGDVAQ  292

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
             +R + LE F KGD+  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA  
Sbjct  293  KKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGE  352

Query  612  MGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
             G +ISL   E       + +  G     ++   D   T      +L
Sbjct  353  SGHSISLACEEYALNLPAIETYTGHSIPVSKYNSDALLTDLPAPKRL  399


 Score = 109 bits (271),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 60/354 (17%), Positives = 121/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P + +A+E   +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +     +  EG++         +   +  +  +                +  + +  G +
Sbjct  71   LLSHPAE--EGRQTNQPRALIMAPTRELAVQIH--------------SDAESLSQVTGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT      +         + + N G
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTTGRLIDYA-------KQNYINLG  157

Query  184  EEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFEIPPHMKNQ--ALFPACVLKNAELKF  240
                    I   + +D+    +     KD+   F   P +  +   LF A  L     + 
Sbjct  158  A-------IQVVV-LDEADRMYDLGFIKDIRWLFRRMPSVDKRLNMLFSAT-LSYRVREL  208

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVK---SQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
             F +             L K       +     +    ++ QT      P + +I   ++
Sbjct  209  AFEQM--NNAEYVEVEPLQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRCIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                   +  ++   ++     R  L+ G VA + +L +LE+     +DI+V T
Sbjct  267  -------HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVAT  313


>sp|Q66G19|RHLB_YERPS ATP-dependent RNA helicase RhlB OS=Yersinia 
pseudotuberculosis serotype I (strain IP32953) OX=273123 
GN=rhlB PE=3 SV=1
Length=428

 Score = 293 bits (750),  Expect = 1e-90, Method: Composition-based stats.
 Identities = 112/407 (28%), Positives = 173/407 (43%), Gaps = 63/407 (15%)

Query  257  ALSKAPDGYIVKSQHSGNAQVTQTKFLP----NAPKALIVEPSRELAEQTLNNIKQFKKY  312
              ++   G  +    S    +           N P+ALI+ P+RELA Q  ++ +   + 
Sbjct  51   GQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQ-  109

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
                 L+  L  GG     QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEA
Sbjct  110  --VTGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEA  167

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D +   G+   I  +  ++P V     +   ++ SATL S+ V++L+ + M+   +V+++
Sbjct  168  DRMYDLGFIKDIRWLFRRMPSV----DKRLNMLFSATL-SYRVRELAFEQMNNAEYVEVE  222

Query  433  GEDSVPDTVH-HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
                    +   +  P N +  RL + L                                
Sbjct  223  PLQKTGHRIKEELFYPSNEEKMRLLQTL--------------------------------  250

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
                     I+E   D+ IIF  TK  C+ +  +    G              L GD   
Sbjct  251  ---------IEEEWPDRCIIFANTKHRCEEIWGHLAADG---------HRVGLLTGDVAQ  292

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
             +R + LE F KGD+  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA  
Sbjct  293  KKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGE  352

Query  612  MGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
             G +ISL   E       + +  G     ++   D   T      +L
Sbjct  353  SGHSISLACEEYALNLPAIETYTGHSIPVSKYNSDALLTDLPAPKRL  399


 Score = 109 bits (271),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 60/354 (17%), Positives = 121/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P + +A+E   +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +     +  EG++         +   +  +  +                +  + +  G +
Sbjct  71   LLSHPAE--EGRQTNQPRALIMAPTRELAVQIH--------------SDAESLSQVTGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT      +         + + N G
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTTGRLIDYA-------KQNYINLG  157

Query  184  EEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFEIPPHMKNQ--ALFPACVLKNAELKF  240
                    I   + +D+    +     KD+   F   P +  +   LF A  L     + 
Sbjct  158  A-------IQVVV-LDEADRMYDLGFIKDIRWLFRRMPSVDKRLNMLFSAT-LSYRVREL  208

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVK---SQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
             F +             L K       +     +    ++ QT      P + +I   ++
Sbjct  209  AFEQM--NNAEYVEVEPLQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRCIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                   +  ++   ++     R  L+ G VA + +L +LE+     +DI+V T
Sbjct  267  -------HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVAT  313


>sp|A4TRC8|RHLB_YERPP ATP-dependent RNA helicase RhlB OS=Yersinia 
pestis (strain Pestoides F) OX=386656 GN=rhlB PE=3 SV=1
Length=428

 Score = 293 bits (750),  Expect = 1e-90, Method: Composition-based stats.
 Identities = 112/407 (28%), Positives = 173/407 (43%), Gaps = 63/407 (15%)

Query  257  ALSKAPDGYIVKSQHSGNAQVTQTKFLP----NAPKALIVEPSRELAEQTLNNIKQFKKY  312
              ++   G  +    S    +           N P+ALI+ P+RELA Q  ++ +   + 
Sbjct  51   GQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQ-  109

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
                 L+  L  GG     QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEA
Sbjct  110  --VTGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEA  167

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D +   G+   I  +  ++P V     +   ++ SATL S+ V++L+ + M+   +V+++
Sbjct  168  DRMYDLGFIKDIRWLFRRMPSV----DKRLNMLFSATL-SYRVRELAFEQMNNAEYVEVE  222

Query  433  GEDSVPDTVH-HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
                    +   +  P N +  RL + L                                
Sbjct  223  PLQKTGHRIKEELFYPSNEEKMRLLQTL--------------------------------  250

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
                     I+E   D+ IIF  TK  C+ +  +    G              L GD   
Sbjct  251  ---------IEEEWPDRCIIFANTKHRCEEIWGHLAADG---------HRVGLLTGDVAQ  292

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
             +R + LE F KGD+  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA  
Sbjct  293  KKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGE  352

Query  612  MGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
             G +ISL   E       + +  G     ++   D   T      +L
Sbjct  353  SGHSISLACEEYALNLPAIETYTGHSIPVSKYNSDALLTDLPAPKRL  399


 Score = 109 bits (271),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 60/354 (17%), Positives = 121/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P + +A+E   +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +     +  EG++         +   +  +  +                +  + +  G +
Sbjct  71   LLSHPAE--EGRQTNQPRALIMAPTRELAVQIH--------------SDAESLSQVTGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT      +         + + N G
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTTGRLIDYA-------KQNYINLG  157

Query  184  EEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFEIPPHMKNQ--ALFPACVLKNAELKF  240
                    I   + +D+    +     KD+   F   P +  +   LF A  L     + 
Sbjct  158  A-------IQVVV-LDEADRMYDLGFIKDIRWLFRRMPSVDKRLNMLFSAT-LSYRVREL  208

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVK---SQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
             F +             L K       +     +    ++ QT      P + +I   ++
Sbjct  209  AFEQM--NNAEYVEVEPLQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRCIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                   +  ++   ++     R  L+ G VA + +L +LE+     +DI+V T
Sbjct  267  -------HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVAT  313


>sp|Q1CNK3|RHLB_YERPN ATP-dependent RNA helicase RhlB OS=Yersinia 
pestis bv. Antiqua (strain Nepal516) OX=377628 GN=rhlB PE=3 
SV=1
Length=428

 Score = 293 bits (750),  Expect = 1e-90, Method: Composition-based stats.
 Identities = 112/407 (28%), Positives = 173/407 (43%), Gaps = 63/407 (15%)

Query  257  ALSKAPDGYIVKSQHSGNAQVTQTKFLP----NAPKALIVEPSRELAEQTLNNIKQFKKY  312
              ++   G  +    S    +           N P+ALI+ P+RELA Q  ++ +   + 
Sbjct  51   GQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQ-  109

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
                 L+  L  GG     QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEA
Sbjct  110  --VTGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEA  167

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D +   G+   I  +  ++P V     +   ++ SATL S+ V++L+ + M+   +V+++
Sbjct  168  DRMYDLGFIKDIRWLFRRMPSV----DKRLNMLFSATL-SYRVRELAFEQMNNAEYVEVE  222

Query  433  GEDSVPDTVH-HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
                    +   +  P N +  RL + L                                
Sbjct  223  PLQKTGHRIKEELFYPSNEEKMRLLQTL--------------------------------  250

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
                     I+E   D+ IIF  TK  C+ +  +    G              L GD   
Sbjct  251  ---------IEEEWPDRCIIFANTKHRCEEIWGHLAADG---------HRVGLLTGDVAQ  292

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
             +R + LE F KGD+  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA  
Sbjct  293  KKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGE  352

Query  612  MGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
             G +ISL   E       + +  G     ++   D   T      +L
Sbjct  353  SGHSISLACEEYALNLPAIETYTGHSIPVSKYNSDALLTDLPAPKRL  399


 Score = 109 bits (271),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 60/354 (17%), Positives = 121/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P + +A+E   +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +     +  EG++         +   +  +  +                +  + +  G +
Sbjct  71   LLSHPAE--EGRQTNQPRALIMAPTRELAVQIH--------------SDAESLSQVTGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT      +         + + N G
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTTGRLIDYA-------KQNYINLG  157

Query  184  EEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFEIPPHMKNQ--ALFPACVLKNAELKF  240
                    I   + +D+    +     KD+   F   P +  +   LF A  L     + 
Sbjct  158  A-------IQVVV-LDEADRMYDLGFIKDIRWLFRRMPSVDKRLNMLFSAT-LSYRVREL  208

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVK---SQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
             F +             L K       +     +    ++ QT      P + +I   ++
Sbjct  209  AFEQM--NNAEYVEVEPLQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRCIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                   +  ++   ++     R  L+ G VA + +L +LE+     +DI+V T
Sbjct  267  -------HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVAT  313


>sp|Q8ZAD8|RHLB_YERPE ATP-dependent RNA helicase RhlB OS=Yersinia 
pestis OX=632 GN=rhlB PE=3 SV=1
Length=428

 Score = 293 bits (750),  Expect = 1e-90, Method: Composition-based stats.
 Identities = 112/407 (28%), Positives = 173/407 (43%), Gaps = 63/407 (15%)

Query  257  ALSKAPDGYIVKSQHSGNAQVTQTKFLP----NAPKALIVEPSRELAEQTLNNIKQFKKY  312
              ++   G  +    S    +           N P+ALI+ P+RELA Q  ++ +   + 
Sbjct  51   GQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQ-  109

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
                 L+  L  GG     QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEA
Sbjct  110  --VTGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEA  167

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D +   G+   I  +  ++P V     +   ++ SATL S+ V++L+ + M+   +V+++
Sbjct  168  DRMYDLGFIKDIRWLFRRMPSV----DKRLNMLFSATL-SYRVRELAFEQMNNAEYVEVE  222

Query  433  GEDSVPDTVH-HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
                    +   +  P N +  RL + L                                
Sbjct  223  PLQKTGHRIKEELFYPSNEEKMRLLQTL--------------------------------  250

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
                     I+E   D+ IIF  TK  C+ +  +    G              L GD   
Sbjct  251  ---------IEEEWPDRCIIFANTKHRCEEIWGHLAADG---------HRVGLLTGDVAQ  292

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
             +R + LE F KGD+  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA  
Sbjct  293  KKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGE  352

Query  612  MGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
             G +ISL   E       + +  G     ++   D   T      +L
Sbjct  353  SGHSISLACEEYALNLPAIETYTGHSIPVSKYNSDALLTDLPAPKRL  399


 Score = 109 bits (271),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 60/354 (17%), Positives = 121/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P + +A+E   +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +     +  EG++         +   +  +  +                +  + +  G +
Sbjct  71   LLSHPAE--EGRQTNQPRALIMAPTRELAVQIH--------------SDAESLSQVTGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT      +         + + N G
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTTGRLIDYA-------KQNYINLG  157

Query  184  EEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFEIPPHMKNQ--ALFPACVLKNAELKF  240
                    I   + +D+    +     KD+   F   P +  +   LF A  L     + 
Sbjct  158  A-------IQVVV-LDEADRMYDLGFIKDIRWLFRRMPSVDKRLNMLFSAT-LSYRVREL  208

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVK---SQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
             F +             L K       +     +    ++ QT      P + +I   ++
Sbjct  209  AFEQM--NNAEYVEVEPLQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRCIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                   +  ++   ++     R  L+ G VA + +L +LE+     +DI+V T
Sbjct  267  -------HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVAT  313


>sp|B2K046|RHLB_YERPB ATP-dependent RNA helicase RhlB OS=Yersinia 
pseudotuberculosis serotype IB (strain PB1/+) OX=502801 
GN=rhlB PE=3 SV=1
Length=428

 Score = 293 bits (750),  Expect = 1e-90, Method: Composition-based stats.
 Identities = 112/407 (28%), Positives = 173/407 (43%), Gaps = 63/407 (15%)

Query  257  ALSKAPDGYIVKSQHSGNAQVTQTKFLP----NAPKALIVEPSRELAEQTLNNIKQFKKY  312
              ++   G  +    S    +           N P+ALI+ P+RELA Q  ++ +   + 
Sbjct  51   GQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQ-  109

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
                 L+  L  GG     QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEA
Sbjct  110  --VTGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEA  167

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D +   G+   I  +  ++P V     +   ++ SATL S+ V++L+ + M+   +V+++
Sbjct  168  DRMYDLGFIKDIRWLFRRMPSV----DKRLNMLFSATL-SYRVRELAFEQMNNAEYVEVE  222

Query  433  GEDSVPDTVH-HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
                    +   +  P N +  RL + L                                
Sbjct  223  PLQKTGHRIKEELFYPSNEEKMRLLQTL--------------------------------  250

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
                     I+E   D+ IIF  TK  C+ +  +    G              L GD   
Sbjct  251  ---------IEEEWPDRCIIFANTKHRCEEIWGHLAADG---------HRVGLLTGDVAQ  292

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
             +R + LE F KGD+  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA  
Sbjct  293  KKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGE  352

Query  612  MGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
             G +ISL   E       + +  G     ++   D   T      +L
Sbjct  353  SGHSISLACEEYALNLPAIETYTGHSIPVSKYNSDALLTDLPAPKRL  399


 Score = 109 bits (271),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 60/354 (17%), Positives = 121/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P + +A+E   +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +     +  EG++         +   +  +  +                +  + +  G +
Sbjct  71   LLSHPAE--EGRQTNQPRALIMAPTRELAVQIH--------------SDAESLSQVTGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT      +         + + N G
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTTGRLIDYA-------KQNYINLG  157

Query  184  EEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFEIPPHMKNQ--ALFPACVLKNAELKF  240
                    I   + +D+    +     KD+   F   P +  +   LF A  L     + 
Sbjct  158  A-------IQVVV-LDEADRMYDLGFIKDIRWLFRRMPSVDKRLNMLFSAT-LSYRVREL  208

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVK---SQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
             F +             L K       +     +    ++ QT      P + +I   ++
Sbjct  209  AFEQM--NNAEYVEVEPLQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRCIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                   +  ++   ++     R  L+ G VA + +L +LE+     +DI+V T
Sbjct  267  -------HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVAT  313


>sp|Q1CBQ4|RHLB_YERPA ATP-dependent RNA helicase RhlB OS=Yersinia 
pestis bv. Antiqua (strain Antiqua) OX=360102 GN=rhlB PE=3 
SV=1
Length=428

 Score = 293 bits (750),  Expect = 1e-90, Method: Composition-based stats.
 Identities = 112/407 (28%), Positives = 173/407 (43%), Gaps = 63/407 (15%)

Query  257  ALSKAPDGYIVKSQHSGNAQVTQTKFLP----NAPKALIVEPSRELAEQTLNNIKQFKKY  312
              ++   G  +    S    +           N P+ALI+ P+RELA Q  ++ +   + 
Sbjct  51   GQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQ-  109

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
                 L+  L  GG     QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEA
Sbjct  110  --VTGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEA  167

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D +   G+   I  +  ++P V     +   ++ SATL S+ V++L+ + M+   +V+++
Sbjct  168  DRMYDLGFIKDIRWLFRRMPSV----DKRLNMLFSATL-SYRVRELAFEQMNNAEYVEVE  222

Query  433  GEDSVPDTVH-HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
                    +   +  P N +  RL + L                                
Sbjct  223  PLQKTGHRIKEELFYPSNEEKMRLLQTL--------------------------------  250

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
                     I+E   D+ IIF  TK  C+ +  +    G              L GD   
Sbjct  251  ---------IEEEWPDRCIIFANTKHRCEEIWGHLAADG---------HRVGLLTGDVAQ  292

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
             +R + LE F KGD+  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA  
Sbjct  293  KKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGE  352

Query  612  MGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
             G +ISL   E       + +  G     ++   D   T      +L
Sbjct  353  SGHSISLACEEYALNLPAIETYTGHSIPVSKYNSDALLTDLPAPKRL  399


 Score = 109 bits (271),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 60/354 (17%), Positives = 121/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P + +A+E   +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +     +  EG++         +   +  +  +                +  + +  G +
Sbjct  71   LLSHPAE--EGRQTNQPRALIMAPTRELAVQIH--------------SDAESLSQVTGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT      +         + + N G
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTTGRLIDYA-------KQNYINLG  157

Query  184  EEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFEIPPHMKNQ--ALFPACVLKNAELKF  240
                    I   + +D+    +     KD+   F   P +  +   LF A  L     + 
Sbjct  158  A-------IQVVV-LDEADRMYDLGFIKDIRWLFRRMPSVDKRLNMLFSAT-LSYRVREL  208

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVK---SQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
             F +             L K       +     +    ++ QT      P + +I   ++
Sbjct  209  AFEQM--NNAEYVEVEPLQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRCIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                   +  ++   ++     R  L+ G VA + +L +LE+     +DI+V T
Sbjct  267  -------HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVAT  313


>sp|A7FD47|RHLB_YERP3 ATP-dependent RNA helicase RhlB OS=Yersinia 
pseudotuberculosis serotype O:1b (strain IP 31758) OX=349747 
GN=rhlB PE=3 SV=1
Length=428

 Score = 293 bits (750),  Expect = 1e-90, Method: Composition-based stats.
 Identities = 112/407 (28%), Positives = 173/407 (43%), Gaps = 63/407 (15%)

Query  257  ALSKAPDGYIVKSQHSGNAQVTQTKFLP----NAPKALIVEPSRELAEQTLNNIKQFKKY  312
              ++   G  +    S    +           N P+ALI+ P+RELA Q  ++ +   + 
Sbjct  51   GQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQ-  109

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
                 L+  L  GG     QL VLE+GVDI++GT GRL D      +NL  ++ +VLDEA
Sbjct  110  --VTGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEA  167

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D +   G+   I  +  ++P V     +   ++ SATL S+ V++L+ + M+   +V+++
Sbjct  168  DRMYDLGFIKDIRWLFRRMPSV----DKRLNMLFSATL-SYRVRELAFEQMNNAEYVEVE  222

Query  433  GEDSVPDTVH-HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
                    +   +  P N +  RL + L                                
Sbjct  223  PLQKTGHRIKEELFYPSNEEKMRLLQTL--------------------------------  250

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
                     I+E   D+ IIF  TK  C+ +  +    G              L GD   
Sbjct  251  ---------IEEEWPDRCIIFANTKHRCEEIWGHLAADG---------HRVGLLTGDVAQ  292

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
             +R + LE F KGD+  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA  
Sbjct  293  KKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGE  352

Query  612  MGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
             G +ISL   E       + +  G     ++   D   T      +L
Sbjct  353  SGHSISLACEEYALNLPAIETYTGHSIPVSKYNSDALLTDLPAPKRL  399


 Score = 109 bits (271),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 60/354 (17%), Positives = 121/354 (34%), Gaps = 62/354 (18%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P + +A+E   +   T IQA ++PL L G DV   A+TG+GKT AF       
Sbjct  11   FSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +     +  EG++         +   +  +  +                +  + +  G +
Sbjct  71   LLSHPAE--EGRQTNQPRALIMAPTRELAVQIH--------------SDAESLSQVTGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT      +         + + N G
Sbjct  115  LGLAYGGDGYDKQLKVLESGV----------DILIGTTGRLIDYA-------KQNYINLG  157

Query  184  EEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFEIPPHMKNQ--ALFPACVLKNAELKF  240
                    I   + +D+    +     KD+   F   P +  +   LF A  L     + 
Sbjct  158  A-------IQVVV-LDEADRMYDLGFIKDIRWLFRRMPSVDKRLNMLFSAT-LSYRVREL  208

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVK---SQHSGNAQVTQTKFLPNAP-KALIVEPSR  296
             F +             L K       +     +    ++ QT      P + +I   ++
Sbjct  209  AFEQM--NNAEYVEVEPLQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRCIIFANTK  266

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                   +  ++   ++     R  L+ G VA + +L +LE+     +DI+V T
Sbjct  267  -------HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVAT  313


>sp|Q1EB38|DBP10_COCIM ATP-dependent RNA helicase DBP10 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DBP10 PE=3 SV=1
Length=927

 Score = 307 bits (785),  Expect = 1e-90, Method: Composition-based stats.
 Identities = 105/510 (21%), Positives = 193/510 (38%), Gaps = 34/510 (7%)

Query  197  DIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFV  256
            ++    VK     + +GL   +   +  +       ++   +     +++         V
Sbjct  71   NLKGRTVKKGGGFQAMGLNANLLKAITRKGFSVPTPIQRKTIPLVLDDQD--------VV  122

Query  257  ALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNP  316
             +++   G           ++ ++       + LI+ PSRELA QTL  +K+  +     
Sbjct  123  GMARTGSGKTAAFVIPMIEKL-KSHSTKVGSRGLILSPSRELALQTLKVVKELGR---GT  178

Query  317  KLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL  376
             L+ +L++GG +  +Q   +    DI++ TPGR   L     L+LS ++++V DEAD L 
Sbjct  179  DLKCVLLVGGDSLEEQFGYMAGNPDIIIATPGRFLHLKVEMNLDLSSIKYVVFDEADRLF  238

Query  377  SQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDS  436
              G++  +  + + +PQ        Q ++ SATL    V+  +   +  PT V L  E  
Sbjct  239  EMGFAAQLTEILHGLPQS------RQTLLFSATLPKSLVE-FARAGLQEPTLVRLDTESK  291

Query  437  VPDTVHHVVVPVNP-KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGE  495
            +   +  V   V   + +     +    I+      +        +    S   +    +
Sbjct  292  ISPDLQSVFFTVKSAEKEGALLHILHDVIKVPTGETEAGKHAREQAISGKSSKKRKRSEQ  351

Query  496  YAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERK  555
                  +       IIF  TK   D +     + G         F+    +G      RK
Sbjct  352  NNPNPQESPTEHSTIIFVATKHHVDYIASLLRESG---------FAVSYAYGSLDQTARK  402

Query  556  QNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLA  615
              +  F+ G    L+ TDVAARGIDI  +  VIN   P + + +VHR+GR  RA R G +
Sbjct  403  IQVSNFRTGISNILVVTDVAARGIDIPILENVINYDFPSQAKIFVHRVGRTARAGRKGWS  462

Query  616  ISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE--IEEHLNCTISQV  673
             SLV          +    G+     R +++         +  ++   I          +
Sbjct  463  YSLVRDADAPYLLDLQLFLGRRLVMGRGQQESANFAEDVVVGGMARESIARSCEWVSKLL  522

Query  674  EPDIKVPVD---EFDGKVTYGQKRAAGGGS  700
            + DI +         G+  Y + R +    
Sbjct  523  DEDIDIQNQREVAMKGEKLYIRTRNSASAE  552


 Score = 99.8 bits (247),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 32/108 (30%), Positives = 50/108 (46%), Gaps = 7/108 (6%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F  MG+   + +A+    + +PT IQ ++IPL+L   DV+  A TGSGKT AF IP+I+ 
Sbjct  83   FQAMGLNANLLKAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIPMIEK  142

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
            +       + G +G        S   +  +           G+D  C 
Sbjct  143  LKSH--STKVGSRG-----LILSPSRELALQTLKVVKELGRGTDLKCV  183


>sp|A4RK80|PRP28_PYRO7 Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 
/ FGSC 8958) OX=242507 GN=PRP28 PE=3 SV=1
Length=674

 Score = 300 bits (769),  Expect = 1e-90, Method: Composition-based stats.
 Identities = 106/448 (24%), Positives = 171/448 (38%), Gaps = 90/448 (20%)

Query  218  IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQV  277
            +   +K         ++ A +                 + +SK   G            +
Sbjct  268  LKDTIKQVGYTEPTPVQRAAIPIAL--------QCRDLIGISKTGSGKTAAFVL---PML  316

Query  278  TQTKFLPN--------APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV-A  328
            +  + LP          P ALI+ P+RELA Q    + +F           + +IG    
Sbjct  317  SYIEPLPPLNEVTKTEGPYALILAPTRELATQIQAEVIKFA---TRMGFTVVCLIGNKRT  373

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
              +    L NG +I+V TPGRL D +    L LSQ  ++VLDEAD ++  G+ D I+++ 
Sbjct  374  IEEDAFALRNGAEIIVATPGRLVDCLERHLLVLSQCSYVVLDEADRMVDGGFEDSIHKIL  433

Query  389  NQIPQ-------------------VTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWV  429
              +P                    +T + +  Q ++ SAT+    V+++++  +  P  V
Sbjct  434  AALPPSNGKPDDRDAEDPNIMSKFLTPNLRYRQTVMYSATMPP-SVERIAKNYLKHPAMV  492

Query  430  DLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAI  489
             +       DTV    + V  + +R                                   
Sbjct  493  TIGTIGEAVDTVEQQAMWVVSEDER-----------------------------------  517

Query  490  KILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDR  549
               + +              I+F  TK +CD + +           K   FS V LHG++
Sbjct  518  ---RNKLRAMLNTYGTGKLVIVFVNTKSNCDAVAKDL---------KSSSFSAVTLHGNK  565

Query  550  KPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA  609
               +R+  L+ F+ G    L+ TDVAARG+DI  V  VIN  +    + Y HRIGR GRA
Sbjct  566  TQDQREAALQSFRDGRTNVLVATDVAARGLDIPDVSLVINFNMAGTIEVYTHRIGRTGRA  625

Query  610  ERMGLAISLVATEKEKVWYHVCSSRGKG  637
             + G+AI+    E   V YH+     K 
Sbjct  626  GKEGMAITFCGPEDHGVLYHLKQIMSKS  653


 Score = 101 bits (252),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 46/107 (43%), Gaps = 1/107 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M  + E  +   +   ++++ +  PT +Q  +IP+ L   D++  ++TGSGKT AF +P+
Sbjct  256  MRFWEESNLPHVLKDTIKQVGYTEPTPVQRAAIPIALQCRDLIGISKTGSGKTAAFVLPM  315

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            +  + E L    E  K +       +   +           FA    
Sbjct  316  LSYI-EPLPPLNEVTKTEGPYALILAPTRELATQIQAEVIKFATRMG  361


>sp|A7EIX7|SUB2_SCLS1 ATP-dependent RNA helicase sub2 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=sub2 PE=3 SV=1
Length=444

 Score = 293 bits (750),  Expect = 2e-90, Method: Composition-based stats.
 Identities = 97/385 (25%), Positives = 158/385 (41%), Gaps = 62/385 (16%)

Query  254  GFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI  313
            G   L +A  G + K+       + Q + +      L++  +RELA Q  N  ++F  ++
Sbjct  96   GTDVLCQAKSG-LGKTAVFVLTTLQQVEVVAGETSVLVMCHTRELAYQIRNEYQRFCHFM  154

Query  314  DNPKLRELLIIGGVAARDQLSVLENG---VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLD  370
              P ++  +  GGV     + VL+N      I+VGTPGRL+ LV    L L+ V+  VLD
Sbjct  155  --PDVKIGVFYGGVPISKDVEVLKNPETHPHIIVGTPGRLNALVRDKYLRLNSVKVFVLD  212

Query  371  EADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVD  430
            E D +L       + R   +I + T   K  QV++ SATL S +V+ + +K M  P  + 
Sbjct  213  ECDKMLD---QIDMRRDVQEIFRATPPQK--QVMMFSATL-SQEVRPICKKFMQNPLEIY  266

Query  431  LKGEDSVPDT-VHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAI  489
            +  E  +    +    + +  +                                      
Sbjct  267  IDNETKLTLYGLQQYYIKLEERE-------------------------------------  289

Query  490  KILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDR  549
               K       + E   +Q IIF ++ +    L++   +           F  V +H   
Sbjct  290  ---KNRRLNELLDELSFNQVIIFVKSTVRATELDKLLRE---------CNFPSVAIHSGV  337

Query  550  KPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA  609
               ER +    FK  + R  + TDV  RGID++ +   IN  LP +  +Y+HR+GR GR 
Sbjct  338  SQEERIKRFNDFKDFNKRICVATDVFGRGIDVNKINLAINYDLPPDADSYLHRVGRAGRF  397

Query  610  ERMGLAISLVATEKEKVWYHVCSSR  634
               GLAIS V+ E ++        R
Sbjct  398  GTKGLAISFVSNEADQEVLKAVEKR  422


 Score = 76.7 bits (187),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 34/63 (54%), Gaps = 0/63 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F E  + PE+ +A+    +  P+++Q   IP  + G DVL  A++G GKT  F +  +
Sbjct  59   TGFREFLLKPELLRAISWCGFEHPSEVQQVCIPQAILGTDVLCQAKSGLGKTAVFVLTTL  118

Query  62   QIV  64
            Q V
Sbjct  119  QQV  121


>sp|A2QEN5|IF4A_ASPNC ATP-dependent RNA helicase eIF4A OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=tif1 PE=3 SV=1
Length=398

 Score = 292 bits (746),  Expect = 2e-90, Method: Composition-based stats.
 Identities = 112/426 (26%), Positives = 185/426 (43%), Gaps = 71/426 (17%)

Query  228  FPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN------AQVTQ  279
            F +  LK   L+  + +G E      +     +    D        +G       + + +
Sbjct  27   FDSMDLKPELLRGVYAYGFERPSAIQQRAIKPIIAGHDVIAQAQSGTGKTATFSISALQK  86

Query  280  TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
                  A +ALIV P+RELA+Q    +     +++   +     IGG   RD ++ L  G
Sbjct  87   IDQELKACQALIVAPTRELAQQIQKVVVAIGDFMN---IECHACIGGTNVRDDMNALRAG  143

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
              +VVGTPGR+ D++    L   Q++  +LDEAD +LS+G+++ I  +   +PQ T    
Sbjct  144  PQVVVGTPGRIHDMIERRVLKTDQMKLFILDEADEMLSRGFTEQIYDIFQLLPQST----  199

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              QV + SAT+   DV +++ K M  P  + +K ++   + +    + V  +  +L    
Sbjct  200  --QVTLLSATMP-QDVLEVTTKFMRDPIRILVKKQELTLEGIKQFYIAVEKEEWKL----  252

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
                                            L   Y    I      QA+IFC T+   
Sbjct  253  ------------------------------DTLSDLYETVTIT-----QAVIFCNTRRKV  277

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            D L                 F+   +HGD +  +R   ++ F+ G  R LI TD+ ARGI
Sbjct  278  DWLTDKLT---------ARDFTVSAMHGDMEQGQRDVIMKEFRSGSSRVLIATDLLARGI  328

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCY  639
            D+  V  VIN  LP  ++NY+HRIGR GR  R G+AI+ V  +  ++   +     +  Y
Sbjct  329  DVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREI-----EQFY  383

Query  640  NTRLKE  645
            +T+++E
Sbjct  384  STQIEE  389


 Score = 97.5 bits (241),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 30/133 (23%), Positives = 52/133 (39%), Gaps = 13/133 (10%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F  M + PE+ + V    +  P+ IQ  +I  I+ G DV+  A++G+GKT  FSI  +Q
Sbjct  26   SFDSMDLKPELLRGVYAYGFERPSAIQQRAIKPIIAGHDVIAQAQSGTGKTATFSISALQ  85

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSA----FAIGSDGLCCQSREVKE  118
             + + LK  Q             +   +          A      I        +    +
Sbjct  86   KIDQELKACQ---------ALIVAPTRELAQQIQKVVVAIGDFMNIECHACIGGTNVRDD  136

Query  119  WHGCRATKGLMKG  131
             +  RA   ++ G
Sbjct  137  MNALRAGPQVVVG  149


>sp|Q58083|H669_METJA Probable ATP-dependent RNA helicase MJ0669 
OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 
2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ0669 
PE=1 SV=1
Length=367

 Score = 290 bits (743),  Expect = 2e-90, Method: Composition-based stats.
 Identities = 108/435 (25%), Positives = 185/435 (43%), Gaps = 76/435 (17%)

Query  208  NGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIV  267
            N  +L L+  I   ++N+       ++   +     +E          VA ++   G   
Sbjct  7    NFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEY-------NIVAQARTGSGKTA  59

Query  268  KSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
                     V +     N  +A+I+ P+RELA Q  + I+  K    N  L+   I GG 
Sbjct  60   SFAIPLIELVNEN----NGIEAIILTPTRELAIQVADEIESLK---GNKNLKIAKIYGGK  112

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM  387
            A   Q+  L+N  +IVVGTPGR+ D ++ G LNL  V++ +LDEAD +L+ G+   + ++
Sbjct  113  AIYPQIKALKN-ANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKI  171

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
             N         K  ++++ SAT+   ++  L++K M   +++    +  +   +    V 
Sbjct  172  LNAC------NKDKRILLFSATMP-REILNLAKKYMGDYSFI----KAKINANIEQSYVE  220

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
            VN                                           + E   R +K  +  
Sbjct  221  VNENE----------------------------------------RFEALCRLLKNKEFY  240

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
              ++FC+TK D   L       G         F    +HGD    +R++ +  FK+  +R
Sbjct  241  -GLVFCKTKRDTKELASMLRDIG---------FKAGAIHGDLSQSQREKVIRLFKQKKIR  290

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             LI TDV +RGID++ +  VIN  LP   ++Y+HRIGR GRA + G AIS++   + K  
Sbjct  291  ILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKL  350

Query  628  YHVCSSRGKGCYNTR  642
             ++  +        +
Sbjct  351  RYIERAMKLKIKKLK  365


 Score = 89.4 bits (220),  Expect = 8e-18, Method: Composition-based stats.
 Identities = 31/141 (22%), Positives = 57/141 (40%), Gaps = 17/141 (12%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGG-DVLMAAETGSGKTGAFSIPVIQ  62
            F+E+ +   I  A+    +  PTDIQ + IPL L    +++  A TGSGKT +F+IP+I+
Sbjct  8    FNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE  67

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGC  122
            +V E                   +   +  +   D   +     +       ++ + +G 
Sbjct  68   LVNE----------NNGIEAIILTPTRELAIQVADEIESLKGNKN------LKIAKIYGG  111

Query  123  RATKGLMKGKHYYEVSCHDQG  143
            +A    +K      +     G
Sbjct  112  KAIYPQIKALKNANIVVGTPG  132


>sp|Q2H4D0|SUB2_CHAGB ATP-dependent RNA helicase SUB2 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=SUB2 PE=3 SV=1
Length=434

 Score = 293 bits (749),  Expect = 2e-90, Method: Composition-based stats.
 Identities = 112/469 (24%), Positives = 181/469 (39%), Gaps = 79/469 (17%)

Query  187  TMHDTIGCYLD-IDKGHVKFSKNGKD-------LGLAFEIPPHMKNQALFPACVLKNAEL  238
               D I    D ++      + NGK          +  +      +   F   +LK   L
Sbjct  3    GEEDLIDYSDDELNNETTAPASNGKKGDAAAAAQNVDKKGSYVGIHSTGFRDFLLKPELL  62

Query  239  KFNFGEEEFKFPPKDGFVALSKA-PDGYIVKSQHSGNAQ--------VTQTKFLPNAPKA  289
            +    +  F+ P +     + +A   G I+    SG  +        + Q + +      
Sbjct  63   R-AIADCGFEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVAGECSV  121

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG---VDIVVGT  346
            L++  +RELA Q  N   +F KY+  P ++  +  GG   +    VL+N      I+VGT
Sbjct  122  LVMCHTRELAFQIRNEYNRFSKYM--PDIKTGVFYGGTPIQKDAEVLKNKETHPHIIVGT  179

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGRL+ LV    L L  VR  VLDE D +L       + R   +I + T   K  QV++ 
Sbjct  180  PGRLNALVRDKHLRLGNVRMFVLDECDKMLD---QIDMRRDVQEIFRATPQQK--QVMMF  234

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDS-VPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
            SATL   ++K +  K M  PT   +  +       +    +P+  +              
Sbjct  235  SATLAD-EIKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYIPLEERE-------------  280

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                                       K       + E + +Q IIF ++ I    L++ 
Sbjct  281  ---------------------------KNRKLNELLDELQFNQVIIFVKSTIRATELDKL  313

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
              +           F  + +H      ER +  + FK+ + R  + TDV  RGIDI  + 
Sbjct  314  LRE---------CNFPSIAVHSGVSQEERIRRYKEFKEFNKRICVATDVFGRGIDIERIN  364

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
              IN  LP +  +Y+HR+GR GR    GLAIS V ++++K        R
Sbjct  365  LAINYDLPADADSYLHRVGRAGRFGTKGLAISFVNSDQDKEVLQQIEKR  413


 Score = 78.6 bits (192),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 0/63 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F +  + PE+ +A+ +  +  P+++Q   IP  + GGD++  A++G GKT  F +  +
Sbjct  50   TGFRDFLLKPELLRAIADCGFEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTL  109

Query  62   QIV  64
            Q V
Sbjct  110  QQV  112


>sp|A1CTZ6|DBP10_ASPCL ATP-dependent RNA helicase dbp10 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / 
NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp10 PE=3 
SV=1
Length=935

 Score = 306 bits (784),  Expect = 2e-90, Method: Composition-based stats.
 Identities = 117/488 (24%), Positives = 197/488 (40%), Gaps = 47/488 (10%)

Query  190  DTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQAL-----FPACVLKNAELKFNFGE  244
            D +G  ++ D G   F    +    A     ++K + +     F A  L    LK     
Sbjct  51   DFLG-DVNDDDGDEAFI--AQQQTSANRKASNLKGRTVKKGGGFQAMGLSANLLK-AIAR  106

Query  245  EEFKFPPKDGF------------VALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIV  292
            + F  P                 V +++   G           ++ ++       + LI+
Sbjct  107  KGFSVPTPIQRKTIPVIMDDQDVVGMARTGSGKTAAFVIPMIEKL-RSHSTKVGARGLIL  165

Query  293  EPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDD  352
             PSRELA QTL  +K+  K      L+ +L++GG +  +Q +++    DIV+ TPGR   
Sbjct  166  SPSRELALQTLKVVKELGK---GTDLKCVLLVGGDSLEEQFTMMAGNPDIVIATPGRFLH  222

Query  353  LVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHS  412
            L     L+L  +R++V DEAD L   G++  +  + + +P         Q ++ SATL  
Sbjct  223  LKVEMNLDLYSIRYVVFDEADRLFEMGFAAQLTEILHGLP------PNRQTLLFSATLPK  276

Query  413  FDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV--VPVNPKTDRLWERLGKSHIRTDDVH  470
              V+  +   +  PT + L  E  +   + +    +  + K   L   L +         
Sbjct  277  SLVE-FARAGLQEPTLIRLDTESKISPDLQNAFFSIKSSEKEGALLYILHEVIKMPTGPT  335

Query  471  AKDNTRPGANSPEMWSEAIKILKGE--YAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQ  528
                 R G ++   +S+A K  + E   AV   +       I+F  TK   D L     +
Sbjct  336  EMAQQRQGEDASARFSKANKRKRAEMEKAVNTKESPTQHSTIVFAATKHHVDYLYSLLHE  395

Query  529  QGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVI  588
             G         F+   ++G      RK  ++ F+ G    L+ TDVAARGIDI  +  VI
Sbjct  396  AG---------FAVSYVYGALDQTARKIQVQNFRSGLSNILVVTDVAARGIDIPILANVI  446

Query  589  NVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGG  648
            N   P + + ++HR+GR  RA R G + SLV          +    G+     R  E+G 
Sbjct  447  NYDFPSQPKIFIHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLFLGRRLVVGR--ENGD  504

Query  649  CTIWYNEM  656
               +  ++
Sbjct  505  HVNFAEDV  512


 Score = 101 bits (252),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 31/108 (29%), Positives = 50/108 (46%), Gaps = 7/108 (6%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F  MG+   + +A+    + +PT IQ ++IP+I+   DV+  A TGSGKT AF IP+I+ 
Sbjct  91   FQAMGLSANLLKAIARKGFSVPTPIQRKTIPVIMDDQDVVGMARTGSGKTAAFVIPMIEK  150

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
            +       + G +G        S   +  +           G+D  C 
Sbjct  151  LRSH--STKVGARG-----LILSPSRELALQTLKVVKELGKGTDLKCV  191


>sp|Q1DI07|SUB2_COCIM ATP-dependent RNA helicase SUB2 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=SUB2 PE=3 SV=1
Length=443

 Score = 293 bits (749),  Expect = 2e-90, Method: Composition-based stats.
 Identities = 94/384 (24%), Positives = 161/384 (42%), Gaps = 63/384 (16%)

Query  254  GFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI  313
                L +A  G + K+       + Q + +P     L++  +RELA Q  N   +F KY+
Sbjct  97   KVDVLCQAKSG-LGKTAVFVLTTLNQLEPVPGECSILVMCHTRELAYQIKNEYARFSKYL  155

Query  314  DNPKLRELLIIGGVAARDQLSVLENG---VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLD  370
              P ++  +  GG   +  + VL +     +IVVGTPGRL+ LV   KL+L  ++  VLD
Sbjct  156  --PDVKTAVFYGGTPMQKDIEVLSSKDTYPNIVVGTPGRLNALVREKKLSLRNIKAFVLD  213

Query  371  EADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVD  430
            E D +L       + R   +I + T   K  QV++ SATL S +++ + +K M  P  V 
Sbjct  214  ECDKMLD---QIDMRRDVQEIFRSTPADK--QVMMFSATL-SQEIRPICKKFMRNPLEVY  267

Query  431  LKGEDS-VPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAI  489
            +  +       +    + ++                                        
Sbjct  268  VDDDTKLTLHGLQQYYIKLSEAE-------------------------------------  290

Query  490  KILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDR  549
               K       +   + +Q IIF ++ +  + L++   +           F  + +H   
Sbjct  291  ---KNRKLNELLDNLEFNQVIIFVKSTLRANELDKLLRE---------CNFPSIAVHSGV  338

Query  550  KPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA  609
               ER +  + FK+ + R  + TDV  RGIDI  +   IN  +P +  +Y+HR+GR GR 
Sbjct  339  SQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDMPADADSYLHRVGRAGRF  398

Query  610  ERMGLAISLVATEKE-KVWYHVCS  632
               GL+IS V++E + K    +  
Sbjct  399  GTKGLSISFVSSEDDMKTLKDIEK  422


 Score = 74.0 bits (180),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 17/63 (27%), Positives = 33/63 (52%), Gaps = 0/63 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F +  + PE+ +A+ +  +  P+++Q   IP  +   DVL  A++G GKT  F +  +
Sbjct  60   TGFRDFLLKPELLRAITDCGFEHPSEVQQVCIPTAILKVDVLCQAKSGLGKTAVFVLTTL  119

Query  62   QIV  64
              +
Sbjct  120  NQL  122


>sp|A1SAL1|RHLB_SHEAM ATP-dependent RNA helicase RhlB OS=Shewanella 
amazonensis (strain ATCC BAA-1098 / SB2B) OX=326297 GN=rhlB 
PE=3 SV=1
Length=439

 Score = 293 bits (749),  Expect = 2e-90, Method: Composition-based stats.
 Identities = 106/413 (26%), Positives = 168/413 (41%), Gaps = 65/413 (16%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP-----NAPKALIVEPSRELAEQ  301
                 K      ++   G  +            T  +P     N P+A+++ P+RELA Q
Sbjct  41   PVLLEKKDIAGQAQTGTGKTLAFLV-ATFNHLLTTPVPEHRQLNQPRAIVMAPTRELAIQ  99

Query  302  TLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNL  361
               +     K+     L+  ++ GG     Q  VL+ GVD+++GT GR+ D V  G +NL
Sbjct  100  IAKDATLLSKH---SGLKVGIVYGGEGYEAQRKVLDKGVDVLIGTTGRIIDYVRQGVINL  156

Query  362  SQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEK  421
              ++ +VLDEAD +   G+   I  + N++P      K    ++ SATL S  V++L+  
Sbjct  157  GAIQAVVLDEADRMFDLGFIKDIRFLFNRMPGA----KERLNMLFSATL-SMKVQELAYD  211

Query  422  IMHFPTWVDLKGEDSVPDTVH-HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480
             M+ P  V++  E+     +   +  P      +L   L                     
Sbjct  212  HMNDPVKVEIAPEEKTSRNIKEEIFYPSMEDKLKLLHSL---------------------  250

Query  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540
                                I+E   ++AI+F  TK  C+NL       G          
Sbjct  251  --------------------IEEDWPEKAIVFANTKYQCENLWASLEADG---------H  281

Query  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600
                L GD    +R + LE+F + ++  L+ TDVAARG+ I  V +V N  LPD+ ++YV
Sbjct  282  RVGLLTGDVPQKKRLKILEQFTQSELDILVATDVAARGLHISDVSHVYNYDLPDDCEDYV  341

Query  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWY  653
            HRIGR GRA + G+++S    E       +          T    D    I  
Sbjct  342  HRIGRTGRAGQKGVSVSFACEEYALNLPAIEDYIKHSIPVTSYDRDALIDIPP  394


 Score = 97.5 bits (241),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 63/352 (18%), Positives = 115/352 (33%), Gaps = 58/352 (16%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+++ +  E+ QA+ E  +   T IQA S+P++L   D+   A+TG+GKT AF +     
Sbjct  11   FADLPLCDEVKQALNENGFEHCTPIQALSLPVLLEKKDIAGQAQTGTGKTLAFLVATFNH  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +  T     E ++         +   +  +    + +       GL      V    G  
Sbjct  71   LLTTP--VPEHRQLNQPRAIVMAPTRELAIQI-AKDATLLSKHSGLKVG--IVYGGEGYE  125

Query  124  ATKGL-MKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNY  182
            A + +  KG    +V     G  R+     Q  ++LG  +                    
Sbjct  126  AQRKVLDKGV---DVLIGTTG--RIIDYVRQGVINLGAIQ--------------------  160

Query  183  GEEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFEIPPHMK---NQALFPACVLKNAEL  238
                         + +D+    F     KD+   F   P  K   N        +K  EL
Sbjct  161  ------------AVVLDEADRMFDLGFIKDIRFLFNRMPGAKERLNMLFSATLSMKVQEL  208

Query  239  KFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSREL  298
             ++   +  K              +     S       +          KA++   ++  
Sbjct  209  AYDHMNDPVKVEIAPEEKTSRNIKEEIFYPSMEDKLKLLHSLIEEDWPEKAIVFANTK--  266

Query  299  AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
              Q     +     ++    R  L+ G V  + +L +LE      +DI+V T
Sbjct  267  -YQ----CENLWASLEADGHRVGLLTGDVPQKKRLKILEQFTQSELDILVAT  313


>sp|A7EYW0|DBP3_SCLS1 ATP-dependent RNA helicase dbp3 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=dbp3 PE=3 SV=2
Length=596

 Score = 298 bits (762),  Expect = 2e-90, Method: Composition-based stats.
 Identities = 108/391 (28%), Positives = 174/391 (45%), Gaps = 63/391 (16%)

Query  252  KDGFVALSKAPDGYIVKSQHSGNAQVTQTK--FLPNAPKALIVEPSRELAEQTLNNIKQF  309
                + +++   G  +         ++          P+A++V P+RELA Q+   I + 
Sbjct  216  GRDVIGVAETGSGKTMAFAVPCVRYMSSLPKNQKNKGPRAVVVSPTRELAMQSYEQIVKL  275

Query  310  KKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVL  369
             K      L  + + GGV   +Q+  L+   DIVV TPGRL+DL++ G  +LS+ R++VL
Sbjct  276  AK---ASGLECVCVYGGVPKDEQIRALKT-ADIVVATPGRLNDLINQGCADLSKARYVVL  331

Query  370  DEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWV  429
            DEAD +L +G+ + I ++ N  P +     + Q ++ +AT     V++L+   M  P  +
Sbjct  332  DEADRMLDKGFEEEIRKIINTTPSLG----KRQTLMFTATWP-ESVRELASTFMTSPVKI  386

Query  430  DLK----GEDSVPDTVHHVVVPVNP--KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPE  483
             +     G+      +   V  V P  K  RL + L +                      
Sbjct  387  AIGDNPTGDLRANSRIVQKVEVVEPRDKEYRLMQLLKQ----------------------  424

Query  484  MWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCV  543
                                 K D+ ++FC  K +   +E +  Q+G         F   
Sbjct  425  ---------------YQSGSQKDDRILVFCLYKKEATRVEGFIRQKG---------FRVA  460

Query  544  CLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI  603
             +HGD    +R ++LE FK G+   L+ TDVAARG+DI  V  VIN T P   ++YVHRI
Sbjct  461  GIHGDLSQEQRTRSLEAFKSGNTPVLVATDVAARGLDIPAVKLVINCTFPLTVEDYVHRI  520

Query  604  GRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            GR GRA + GLAI+L     +     + +  
Sbjct  521  GRTGRAGKDGLAITLFTEHDKAQSGALINVL  551


 Score = 100 bits (249),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 40/138 (29%), Positives = 59/138 (43%), Gaps = 15/138 (11%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F  + +     +A  + D+  PT IQA + P +L G DV+  AETGSGKT AF++P ++ 
Sbjct  182  FDYLPITDSAQRAPFK-DFKAPTPIQAAAWPFLLAGRDVIGVAETGSGKTMAFAVPCVRY  240

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC----------QS  113
            +    K+Q    K K       S   +  M  Y++    A  S   C           Q 
Sbjct  241  MSSLPKNQ----KNKGPRAVVVSPTRELAMQSYEQIVKLAKASGLECVCVYGGVPKDEQI  296

Query  114  REVKEWHGCRATKGLMKG  131
            R +K      AT G +  
Sbjct  297  RALKTADIVVATPGRLND  314


>sp|Q6C9P3|DBP3_YARLI ATP-dependent RNA helicase DBP3 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP3 PE=3 
SV=1
Length=532

 Score = 295 bits (756),  Expect = 3e-90, Method: Composition-based stats.
 Identities = 117/478 (24%), Positives = 194/478 (41%), Gaps = 70/478 (15%)

Query  198  IDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVA  257
              +  +  +  G+ +    E      +  +                   +    KD  V 
Sbjct  110  FKEHTI--TIEGEQMRPTMEFSHVTLDPRITKVLTKFPRPTPIQAVSWPYLLAGKD-MVG  166

Query  258  LSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPK  317
            +++   G            V  T       + L+V P+RELA Q  +NIK+     D   
Sbjct  167  VAETGSGKTFTFAVPALEHVLSTSG-GKGVRVLVVSPTRELAMQIYDNIKEL---CDVVG  222

Query  318  LRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLS  377
            L  + + GGV    Q S L+     V+ TPGRL DL+  G  +LS+V +LVLDEAD +L 
Sbjct  223  LHAVCVYGGVPKEQQRSDLKR-ASFVIATPGRLCDLIDEGSCDLSKVSYLVLDEADRMLE  281

Query  378  QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSV  437
            +G+ + I ++       ++     Q ++ SAT    +V+KL+E  M  PT V +   D +
Sbjct  282  KGFEEDIKKIIG-----STRPTGRQTVMFSATWPP-EVRKLAEGFMKTPTKVMIGERDEL  335

Query  438  PDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYA  497
                            R+ + +     R  +    D  R  AN                 
Sbjct  336  AAN------------KRITQSVEVLDPRAKEGRLLDLLRQYANDDF--------------  369

Query  498  VRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQN  557
                      + +IF   K +   +E    ++G         +    +HGD    +R + 
Sbjct  370  ----------KILIFALYKKEATRVENTLTRRG---------YGVAAIHGDLSQQQRTKA  410

Query  558  LERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAIS  617
            L+ FKKG+   L+ TDVAARG+DI  V  VIN+T P   ++YVHRIGR GRA + G AI+
Sbjct  411  LDEFKKGEKNILLATDVAARGLDIPNVKLVINLTFPLTVEDYVHRIGRTGRAGKTGQAIT  470

Query  618  LVATEKEKVWYHVCSSRG-----------KGCYNTRLKEDGGCTIWYNEMQLLSEIEE  664
            L    ++ +   + +              K   +T+ KE G    ++ ++ +  + ++
Sbjct  471  LFTEHEKHLSGALINVLRGADQPVPDELLKFGGHTKKKEHGAYGAFFKDVDMTKKAKK  528


 Score = 94.0 bits (232),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 39/136 (29%), Positives = 58/136 (43%), Gaps = 19/136 (14%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS + + P I + + +  +  PT IQA S P +L G D++  AETGSGKT  F++P ++ 
Sbjct  128  FSHVTLDPRITKVLTK--FPRPTPIQAVSWPYLLAGKDMVGVAETGSGKTFTFAVPALEH  185

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF--AIGSDGLCC--------QS  113
            V  T         GK       S   +  M  YD        +G   +C         Q 
Sbjct  186  VLSTSG-------GKGVRVLVVSPTRELAMQIYDNIKELCDVVGLHAVCVYGGVPKEQQR  238

Query  114  REVKEWHGCRATKGLM  129
             ++K      AT G +
Sbjct  239  SDLKRASFVIATPGRL  254


>sp|Q7SH33|PRP5_NEUCR Pre-mRNA-processing ATP-dependent RNA helicase 
prp-5 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A 
/ CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=prp-5 
PE=3 SV=1
Length=1194

 Score = 310 bits (794),  Expect = 3e-90, Method: Composition-based stats.
 Identities = 109/446 (24%), Positives = 187/446 (42%), Gaps = 75/446 (17%)

Query  231  CVLKNAELKF--NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFL-----  283
            C L    L    + G E+           +    D   V    SG         L     
Sbjct  566  CGLTRPILDTIESLGFEKPTPIQMQALPVIMSGRDVIGVAKTGSGKTMAFALPMLRHVKD  625

Query  284  ------PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE  337
                   +   ALI+ P+REL  Q  ++++ F K +   KLR +   GG A +DQ++ L+
Sbjct  626  QDPVTGDDGAIALIMTPTRELCTQIYSDLQPFAKAL---KLRVVAAYGGNAIKDQIAELK  682

Query  338  NGVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV  394
             G +I+V TPGRL DL++       NL +  +LVLDEAD +   G+   + ++ N +   
Sbjct  683  RGAEIIVATPGRLIDLLAANGGRVTNLKRATYLVLDEADRMFDMGFEPQVMKIFNNV---  739

Query  395  TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNP--KT  452
                   Q I+ SAT+    +  L++K++  P  + + G   V   +  +V  ++   K 
Sbjct  740  ---RPDRQTILFSATMPRI-IDALTKKVLRDPVEITVGGRSVVAPEITQIVEVMDEGKKF  795

Query  453  DRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF  512
            +RL E LG+ +   DDV                                      +++IF
Sbjct  796  NRLLELLGELYADDDDV--------------------------------------RSLIF  817

Query  513  CRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICT  572
               +   D+L +  +++G         + C+ +HG +   +R   +  FKKG    LI T
Sbjct  818  VERQEKADDLLRELLRRG---------YGCMSIHGGKDQEDRNSTISDFKKGVCPILIAT  868

Query  573  DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
             +AARG+D+  +  VIN   P+  ++YVHR GR GRA   G A++ +  E+E     +  
Sbjct  869  SIAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGTAVTFITEEQENCASGIAK  928

Query  633  SRGKGCYNTRLKEDGGCTIWYNEMQL  658
            +  +       + +     W  +++ 
Sbjct  929  ALEQSGQPVPDRLNEMRKAWKEKVKA  954


 Score = 112 bits (279),  Expect = 5e-24, Method: Composition-based stats.
 Identities = 61/372 (16%), Positives = 127/372 (34%), Gaps = 51/372 (14%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  +S+ G+   I   +E + +  PT IQ +++P+I+ G DV+  A+TGSGKT AF++P+
Sbjct  560  VQKWSQCGLTRPILDTIESLGFEKPTPIQMQALPVIMSGRDVIGVAKTGSGKTMAFALPM  619

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120
            ++ V    KDQ         I    +   +     Y     FA        + R V  + 
Sbjct  620  LRHV----KDQDPVTGDDGAIALIMTPTRELCTQIYSDLQPFAK-----ALKLRVVAAYG  670

Query  121  GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD  180
            G      + + K   E+     G   +              +  +       +  +  F+
Sbjct  671  GNAIKDQIAELKRGAEIIVATPGRL-IDLLAANGGRVTNLKRATYLVLDEADRMFDMGFE  729

Query  181  NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF  240
                +   +      +  D+  + FS           I   +  + L           + 
Sbjct  730  PQVMKIFNN------VRPDRQTILFSA------TMPRIIDALTKKVLRDPV-------EI  770

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE  300
              G      P     V +      +     +     + +     +  ++LI    +E A+
Sbjct  771  TVGGRSVVAPEITQIVEVMDEGKKF-----NRLLELLGELYADDDDVRSLIFVERQEKAD  825

Query  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQ---LSVLENG-VDIVVGTPGRLDDLVST  356
              L  + +            + I GG    D+   +S  + G   I++ T       ++ 
Sbjct  826  DLLRELLR-------RGYGCMSIHGGKDQEDRNSTISDFKKGVCPILIAT------SIAA  872

Query  357  GKLNLSQVRFLV  368
              L++ Q++ ++
Sbjct  873  RGLDVKQLKLVI  884


>sp|P21693|DBPA_ECOLI ATP-dependent RNA helicase DbpA OS=Escherichia 
coli (strain K12) OX=83333 GN=dbpA PE=1 SV=2
Length=457

 Score = 293 bits (750),  Expect = 3e-90, Method: Composition-based stats.
 Identities = 102/388 (26%), Positives = 159/388 (41%), Gaps = 65/388 (17%)

Query  242  FGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNA------QVTQTKFLPNAPKALIVEPS  295
             G             A+    D  +     SG         + Q        +AL++ P+
Sbjct  21   LGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPT  80

Query  296  RELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVS  355
            RELA+Q    +++  +++ N K+  L   GG     Q   L++   I+V TPGRL D + 
Sbjct  81   RELADQVAGELRRLARFLPNTKILTLC--GGQPFGMQRDSLQHAPHIIVATPGRLLDHLQ  138

Query  356  TGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDV  415
             G ++L  +  LV+DEAD +L  G+SD I+ +    P         Q ++ SAT     +
Sbjct  139  KGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS------RQTLLFSATWPEA-I  191

Query  416  KKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNT  475
              +S ++   P  +++   D++P          +     L +RL                
Sbjct  192  AAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRL----------------  235

Query  476  RPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDK  535
                                     +  H+    ++FC TK DC  +     + G     
Sbjct  236  -------------------------LSLHQPSSCVVFCNTKKDCQAVCDALNEVGQ----  266

Query  536  KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDE  595
                 S + LHGD +  +R Q L RF  G  R L+ TDVAARG+DI  +  V+N  L  +
Sbjct  267  -----SALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWD  321

Query  596  KQNYVHRIGRVGRAERMGLAISLVATEK  623
             + +VHRIGR  RA   GLAIS  A E+
Sbjct  322  PEVHVHRIGRTARAGNSGLAISFCAPEE  349


 Score = 89.0 bits (219),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 43/73 (59%), Gaps = 1/73 (1%)

Query  1   MAAFSEMG-VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
           M AFS +  + P     + E+ +L  T +QA ++P IL G DV + A+TGSGKT AF + 
Sbjct  1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG  60

Query  60  VIQIVYETLKDQQ  72
           ++Q +  +L   Q
Sbjct  61  LLQQIDASLFQTQ  73


>sp|Q54VT4|DDX47_DICDI Probable ATP-dependent RNA helicase ddx47 
OS=Dictyostelium discoideum OX=44689 GN=ddx47 PE=3 SV=1
Length=546

 Score = 296 bits (757),  Expect = 3e-90, Method: Composition-based stats.
 Identities = 102/484 (21%), Positives = 173/484 (36%), Gaps = 77/484 (16%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             + LG+  +I              ++   + +               + L++   G    
Sbjct  121  FESLGVHPQIIDACNKLGFNKPKEIQRESIPWAL--------KGRDIIGLAQTGSGKTAA  172

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
                   ++ +    P     L + P+RELA Q  +        I    ++  +++GG+ 
Sbjct  173  FVIPVLQKLLEA---PQGLFCLALAPTRELAYQIADQFNAIGSTIG---VKTCVLVGGID  226

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVS-TGKLNLSQVRFLVLDEADGLLSQGYSDFINRM  387
            +  Q   L     +VVG+PGR+   +  T   NL  +++ ++DEAD L S  + + +N +
Sbjct  227  SMSQSLALAKKPHVVVGSPGRVLHHLEHTKGFNLRSIKYFIMDEADRLFSADFEEEVNNI  286

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
               IP      K     + SAT+ S  V KL    +  P  V +  +    DT+    + 
Sbjct  287  LKVIP------KERNTYLFSATMTS-KVAKLQRASLVNPVKVQVASKYQTVDTLLQQYLF  339

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
            V  K                                         K  Y    + E   +
Sbjct  340  VPFK----------------------------------------YKDCYLAYILNELAGN  359

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
              IIF  T      +       G         F  + ++GD    +R  +L +FK+G   
Sbjct  360  LTIIFTSTCASSTKIAMMLRNLG---------FGAIPINGDMDQGKRLASLNKFKQGTKS  410

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             L+ TDVAARG+DI  V  VIN  +P   + YVHR+GR  RA   G AI++V     +++
Sbjct  411  ILVATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGNSGRAITIVTQYDVEMY  470

Query  628  YHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGK  687
              +     K   +   +E+    I+   +Q     E H   T    + +     D   G 
Sbjct  471  QRIEFVLKKKLDSFPCQEE-TVLIFLERVQ-----EAHRIATNELKDKNYSSSSDRHSGD  524

Query  688  VTYG  691
                
Sbjct  525  SEGS  528


 Score = 110 bits (276),  Expect = 4e-24, Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 49/109 (45%), Gaps = 9/109 (8%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F  +GV P+I  A  ++ +  P +IQ ESIP  L G D++  A+TGSGKT AF IPV+Q
Sbjct  120  TFESLGVHPQIIDACNKLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIPVLQ  179

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
             + E           +       +   +      D+ +A         C
Sbjct  180  KLLE---------APQGLFCLALAPTRELAYQIADQFNAIGSTIGVKTC  219


>sp|Q9M2E0|RH12_ARATH DEAD-box ATP-dependent RNA helicase 12 OS=Arabidopsis 
thaliana OX=3702 GN=RH12 PE=2 SV=1
Length=498

 Score = 294 bits (753),  Expect = 4e-90, Method: Composition-based stats.
 Identities = 111/449 (25%), Positives = 175/449 (39%), Gaps = 80/449 (18%)

Query  206  SKNGKDLGLAFEIPPHMK----------NQALFPACVLKNAELKFNFGEEEFKFPPKDGF  255
              NG+D      +PP                 F    LK   LK  + E+ F+ P     
Sbjct  94   DANGQDWKATLRLPPPDTRYQTADVTATKGNEFEDYFLKRDLLKGIY-EKGFEKPSPIQE  152

Query  256  VALSKAPDGY-IVKSQHSGNAQ--------VTQTKFLPNAPKALIVEPSRELAEQTLNNI  306
             ++  A  G  I+    +G  +        + +     N  +A+I+ P+RELA QT    
Sbjct  153  ESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVC  212

Query  307  KQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRF  366
            K+  KY++   ++ ++  GG + RD +  L   V ++VGTPGR+ DL   G   L     
Sbjct  213  KELSKYLN---IQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLKDCAM  269

Query  367  LVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFP  426
            LV+DEAD LLS  +   +  +   +PQ        Q ++ SAT     VK   ++ +  P
Sbjct  270  LVMDEADKLLSAEFQPSLEELIQFLPQ------NRQFLMFSATFP-VTVKAFKDRHLRKP  322

Query  427  TWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWS  486
              ++L  +      V      V  +                                   
Sbjct  323  YVINLM-DQLTLMGVTQYYAFVEERQ----------------------------------  347

Query  487  EAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLH  546
                  K         + +++Q+IIFC +    + L +   + G         +SC  +H
Sbjct  348  ------KVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELG---------YSCFYIH  392

Query  547  GDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRV  606
                   R +    F+ G  R L+CTD+  RGIDI  V  VIN   P   ++Y+HR+GR 
Sbjct  393  AKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRS  452

Query  607  GRAERMGLAISLVATEKEKVWYHVCSSRG  635
            GR   +GLA++LV  E     Y      G
Sbjct  453  GRFGHLGLAVNLVTYEDRFKMYQTEQELG  481


 Score = 96.0 bits (237),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 9/91 (10%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +  +  ++ + + E  +  P+ IQ ESIP+ L G D+L  A+ G+GKTGAF IPV++ 
Sbjct  126  FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK  185

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
            +       Q                 +  + 
Sbjct  186  IDPNNNVIQ---------AMILVPTRELALQ  207


>sp|Q94BV4|RH6_ARATH DEAD-box ATP-dependent RNA helicase 6 OS=Arabidopsis 
thaliana OX=3702 GN=RH6 PE=2 SV=2
Length=528

 Score = 295 bits (755),  Expect = 4e-90, Method: Composition-based stats.
 Identities = 113/465 (24%), Positives = 180/465 (39%), Gaps = 84/465 (18%)

Query  194  CYLDIDKGHV----KFSKNGKDLGLAFEIPPHM----------KNQALFPACVLKNAELK  239
             Y+D  +  V        N +D     ++PP                 F    LK   L+
Sbjct  108  SYIDEVEKTVQSEAISDSNNEDWKATLKLPPRDNRYQTEDVTATKGNEFEDYFLKRDLLR  167

Query  240  FNFGEEEFKFPPKDGFVALSKAPDGY-IVKSQHSGNAQ--------VTQTKFLPNAPKAL  290
              + E+ F+ P      ++  A  G  I+    +G  +        + +     N  +A+
Sbjct  168  GIY-EKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAV  226

Query  291  IVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRL  350
            I+ P+RELA QT    K+  KY+   K+  ++  GG + RD +  L   V ++VGTPGR+
Sbjct  227  ILVPTRELALQTSQVCKELSKYL---KIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRI  283

Query  351  DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATL  410
             DL   G   L     LV+DEAD LLS  +   I  +   +P      +  Q+++ SAT 
Sbjct  284  LDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLP------ESRQILMFSATF  337

Query  411  HSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVH  470
                VK   ++ +  P  ++L  +      V      V  +                   
Sbjct  338  P-VTVKSFKDRYLKKPYIINLM-DQLTLMGVTQYYAFVEERQ------------------  377

Query  471  AKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQG  530
                                  K         + +++Q+IIFC +    + L +   + G
Sbjct  378  ----------------------KVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELG  415

Query  531  GGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINV  590
                     +SC  +H       R +    F+ G  R L+CTD+  RGIDI  V  VIN 
Sbjct  416  ---------YSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINF  466

Query  591  TLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRG  635
              P   ++Y+HR+GR GR   +GLA++LV  E     Y      G
Sbjct  467  DFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQELG  511


 Score = 94.0 bits (232),  Expect = 9e-19, Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 9/91 (10%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +  +  ++ + + E  +  P+ IQ ESIP+ L G D+L  A+ G+GKTGAF IP ++ 
Sbjct  156  FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK  215

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
            +           +             +  + 
Sbjct  216  I---------DPENNVIQAVILVPTRELALQ  237


>sp|Q6H7S2|RH8_ORYSJ DEAD-box ATP-dependent RNA helicase 8 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os02g0641800 PE=2 SV=2
Length=508

 Score = 294 bits (753),  Expect = 4e-90, Method: Composition-based stats.
 Identities = 96/382 (25%), Positives = 161/382 (42%), Gaps = 61/382 (16%)

Query  254  GFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI  313
            G   L++A +G   K+       + +     NA + +I+ P+RELA QT    K+  K++
Sbjct  171  GSDILARAKNG-TGKTAAFCIPALEKIDQEKNAIQVVILVPTRELALQTSQVCKELGKHL  229

Query  314  DNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEAD  373
               K++ ++  GG + +D +  L   V ++VGTPGR+ DL   G   L     L++DEAD
Sbjct  230  ---KIQVMVTTGGTSLKDDIIRLYQPVHLLVGTPGRILDLTKKGICILKDCSMLIMDEAD  286

Query  374  GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG  433
             LLS  +   + ++   +P         Q+++ SAT     VK+  +K +  P  ++L  
Sbjct  287  KLLSPEFQPSVEQLIRYLPAS------RQILMFSATFP-VTVKEFKDKYLPKPYVINLMD  339

Query  434  EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK  493
            E ++   +      V  +                                         K
Sbjct  340  ELTLK-GITQFYAFVEERQ----------------------------------------K  358

Query  494  GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
                     + +++Q+IIFC +    + L +   + G         +SC  +H       
Sbjct  359  VHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELG---------YSCFYIHAKMLQDH  409

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
            R +    F+ G  R L+CTD+  RGIDI  V  VIN   P   + Y+HR+GR GR   +G
Sbjct  410  RNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKTAETYLHRVGRSGRFGHLG  469

Query  614  LAISLVATEKEKVWYHVCSSRG  635
            LA++L+  E     Y +    G
Sbjct  470  LAVNLITYEDRFNLYRIEQELG  491


 Score = 96.7 bits (239),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 40/91 (44%), Gaps = 9/91 (10%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +  +  E+   + E  +  P+ IQ ESIP+ L G D+L  A+ G+GKT AF IP ++ 
Sbjct  136  FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEK  195

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
            + +     Q                 +  + 
Sbjct  196  IDQEKNAIQV---------VILVPTRELALQ  217


>sp|Q1E5R1|DHH1_COCIM ATP-dependent RNA helicase DHH1 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DHH1 PE=3 SV=1
Length=512

 Score = 294 bits (753),  Expect = 4e-90, Method: Composition-based stats.
 Identities = 111/425 (26%), Positives = 174/425 (41%), Gaps = 68/425 (16%)

Query  213  GLAFEIP--PHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            GL FE           +F A   K + +     +EE       G   L++A +G   K+ 
Sbjct  46   GLEFEDFYIKRELMMGIFEAGFEKPSPI-----QEETIPVALTGRDILARAKNG-TGKTA  99

Query  271  HSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
                  + +T    +  +ALI+ P+RELA QT    K   K++    +  ++  GG   +
Sbjct  100  AFVIPTLERTNPKISKTQALILVPTRELALQTSQVCKTLGKHLG---INVMVTTGGTGLQ  156

Query  331  DQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ  390
            D +  L + V I+VGTPGR+ DL S G  +LS+    V+DEAD LLS  ++  I ++ + 
Sbjct  157  DDIIRLSDTVHIIVGTPGRILDLASKGVADLSECTTFVMDEADKLLSPEFTPVIEQLLSF  216

Query  391  IPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNP  450
             P      K  QV++ SAT     VK   +K M  P  ++L  ++     +      V  
Sbjct  217  HP------KDRQVMLFSATFP-MIVKSFKDKHMRNPYEINLM-DELTLRGITQYYAFVEE  268

Query  451  KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAI  510
            +                                         K         + +++Q+I
Sbjct  269  RQ----------------------------------------KVHCLNTLFSKLQINQSI  288

Query  511  IFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLI  570
            IFC +    + L +   + G         +SC   H       R +    F+ G  R L+
Sbjct  289  IFCNSTNRVELLAKKITELG---------YSCFYSHARMLQQNRNRVFHDFRNGVCRNLV  339

Query  571  CTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
            C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR   +GLAI+L+  +     Y +
Sbjct  340  CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRYNLYKI  399

Query  631  CSSRG  635
                G
Sbjct  400  EQELG  404


 Score = 96.4 bits (238),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 40/91 (44%), Gaps = 9/91 (10%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +  +  E+   + E  +  P+ IQ E+IP+ L G D+L  A+ G+GKT AF IP ++ 
Sbjct  49   FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLE-  107

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
                    +   K   T         +  + 
Sbjct  108  --------RTNPKISKTQALILVPTRELALQ  130


>sp|Q6BTL5|DRS1_DEBHA ATP-dependent RNA helicase DRS1 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DRS1 PE=3 SV=1
Length=771

 Score = 302 bits (772),  Expect = 5e-90, Method: Composition-based stats.
 Identities = 104/523 (20%), Positives = 203/523 (39%), Gaps = 67/523 (13%)

Query  178  QFDNYGEEFTMHDTIGCYLDIDKGHVK---FSKNGKDLGLAFEIPPHMKNQALFPACVLK  234
            Q D    E T  D    Y D ++            + L L+  +   +          ++
Sbjct  226  QEDEKPVEDTAEDMAEFYADEEEATTAKKQLHTTFQSLQLSRPVLKGLSQLGYTKPSPIQ  285

Query  235  NAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEP  294
            +A +                 VA +    G           ++       ++ + +++ P
Sbjct  286  SACIPIAL--------LGKDIVAGAVTGSGKTAAYMIPIIERLLYKPAKISSTRVIVLAP  337

Query  295  SRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV  354
            +RELA Q  +  K+  ++++N  L   L +GG+  R Q   L+   DIV+ TPGRL D +
Sbjct  338  TRELAIQVCDVGKKIGQFVNN--LNFGLAVGGLNLRQQEQQLKTRPDIVIATPGRLIDHI  395

Query  355  -STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSF  413
             ++   ++  +  LV+DEAD +L +G+   +  + + IP+      + Q ++ SAT+++ 
Sbjct  396  RNSPSFSIDSLEVLVIDEADRMLDEGFQAELTEILSLIPR-----HKRQTLLYSATMNT-  449

Query  414  DVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKD  473
             ++ L +  +  P  V +    S    +    V +  +       L +            
Sbjct  450  KIQDLIQLSLQKPVRVMIDPPKSAAIKLVQEFVRIRKRDHLKPALLFQ------------  497

Query  474  NTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGP  533
                                    ++++   + ++ ++F   K     L       G   
Sbjct  498  -----------------------LIKSVDPSQQNRIVVFVARKESAHKLRIILGLLG---  531

Query  534  DKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP  593
                       LHG     +R  ++  FK   V  LICTD+AARG+DI  +  VIN  +P
Sbjct  532  ------MRVSELHGSLTQEQRLASVNDFKNLTVPVLICTDLAARGLDIPKIEIVINYDMP  585

Query  594  DEKQNYVHRIGRVGRAERMGLAISLV--ATEKEKVWYHVCSSRG-KGCYNTRLKEDGGCT  650
               + Y+HR+GR  RA R G +I+ V  +T+   +      S   +   N++  +     
Sbjct  586  KTHEIYLHRVGRTARAGREGKSITFVGESTQDRAIVKDAIKSISEEQARNSKQGKAVSRN  645

Query  651  IWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQK  693
            + + E++ L++I E     I +V  + K   +    ++   + 
Sbjct  646  VDWKEVEELNKIVESKATVIEEVLDEEKQAKEMLHAEMELSKA  688


 Score = 103 bits (256),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 47/108 (44%), Gaps = 6/108 (6%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F  + +   + + + ++ +  P+ IQ+  IP+ L G D++  A TGSGKT A+ IP+I
Sbjct  258  TTFQSLQLSRPVLKGLSQLGYTKPSPIQSACIPIALLGKDIVAGAVTGSGKTAAYMIPII  317

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGL  109
            + +           K  +T     +   +  +   D G       + L
Sbjct  318  ERLLYKP------AKISSTRVIVLAPTRELAIQVCDVGKKIGQFVNNL  359


>sp|Q4WH83|DBP3_ASPFU ATP-dependent RNA helicase dbp3 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=dbp3 PE=3 SV=1
Length=503

 Score = 294 bits (752),  Expect = 5e-90, Method: Composition-based stats.
 Identities = 111/397 (28%), Positives = 165/397 (42%), Gaps = 65/397 (16%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVT---QTKFLPNAPKALIVEPSRELAEQTL  303
                     + +++   G  +        ++    + K     P A+I+ P+RELA Q  
Sbjct  117  PLLFAGRDVIGIAETGSGKTLAFGLPCIKKILDSGKVKRKHARPAAVIISPTRELAMQIY  176

Query  304  NNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQ  363
            +   Q  K+  +  +R   I GGV   +Q   L+    IVV TPGRL DL   G ++L +
Sbjct  177  D---QLSKFGASVDIRVTCIYGGVKKDEQREALKTAA-IVVATPGRLKDLKDDGSVDLGK  232

Query  364  VRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIM  423
            V++LVLDEAD +L +G+   I  +    P  T      Q ++ +AT     V+ L+   M
Sbjct  233  VKYLVLDEADRMLDKGFEQDIKDIIRSTPDST-----RQTVMFTATWPP-SVRDLAASFM  286

Query  424  HFPTWVDLKGEDSV----PDTVHHVVVPVNP--KTDRLWERLGKSHIRTDDVHAKDNTRP  477
                 V + G+ S        +  VV  V P  K  RL + L +S               
Sbjct  287  TSAVTVTIGGDPSADPRANTRIKQVVEVVKPQEKEARLVQLLSRSQRGAAV---------  337

Query  478  GANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKG  537
                                         D+ ++FC  K +   +E+           + 
Sbjct  338  ----------------------------GDKVLVFCLYKKEAVRVERLL---------RS  360

Query  538  HQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQ  597
              F    +HGD   HER ++LE FK G    L+ TDVAARG+DI  V  VINVT P   +
Sbjct  361  KNFKVAGIHGDLNQHERFKSLEAFKTGSATVLVATDVAARGLDIPSVKLVINVTFPLTVE  420

Query  598  NYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            +YVHRIGR GRA   G AI+L     +     + +  
Sbjct  421  DYVHRIGRTGRAGADGHAITLFTEADKAQSGALINVL  457


 Score = 106 bits (265),  Expect = 7e-23, Method: Composition-based stats.
 Identities = 40/143 (28%), Positives = 64/143 (45%), Gaps = 18/143 (13%)

Query  1    MAAFSEMGVMPEIAQAVEE--MDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSI  58
            + +FS +   P     + +    +  PT IQ+ + PL+  G DV+  AETGSGKT AF +
Sbjct  85   IMSFSHL---PSSFSKIYDPLSSFSSPTPIQSATWPLLFAGRDVIGIAETGSGKTLAFGL  141

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD-GLCC------  111
            P I+ + ++ K +++  +    I    S   +  M  YD+ S F    D  + C      
Sbjct  142  PCIKKILDSGKVKRKHARPAAVI---ISPTRELAMQIYDQLSKFGASVDIRVTCIYGGVK  198

Query  112  ---QSREVKEWHGCRATKGLMKG  131
               Q   +K      AT G +K 
Sbjct  199  KDEQREALKTAAIVVATPGRLKD  221


>sp|Q26696|DDX17_TRYBB Putative DEAD-box RNA helicase HEL64 OS=Trypanosoma 
brucei brucei OX=5702 GN=HEL64 PE=3 SV=1
Length=568

 Score = 296 bits (757),  Expect = 5e-90, Method: Composition-based stats.
 Identities = 99/487 (20%), Positives = 183/487 (38%), Gaps = 72/487 (15%)

Query  177  KQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNA  236
            +  +    ++     I  + D     +  S +     +   +   +  Q       ++  
Sbjct  73   QLSEEEATKWREEHVITIFGDDCPPPMS-SFDHLCGIVPPYLLKKLTAQNFTAPTPVQAQ  131

Query  237  ELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP--NAPKALIVEP  294
                               V ++K   G  +       A +   + L   + P  +++ P
Sbjct  132  SWPVLLS--------GRDLVGVAKTGSGKTLGFMVPALAHIAVQEPLRSGDGPMVVVLAP  183

Query  295  SRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV  354
            +RELA+Q     K+    +    +    + GG     QL +L  GV I+V TPGRL D +
Sbjct  184  TRELAQQIEEETKK----VIPGDVYCGCVYGGAPKGPQLGLLRRGVHILVATPGRLIDFL  239

Query  355  STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFD  414
               ++NL +V +LVLDEAD +L  G+   + ++  QI          Q ++ SAT    +
Sbjct  240  DIKRINLHRVTYLVLDEADRMLDMGFEPQVRKICGQI------RPDRQTVMFSATWP-RE  292

Query  415  VKKLSEKIMHFPTWVDLKG-EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKD  473
            +++L+ +       + +   E      V    +                           
Sbjct  293  IQRLAAEFQKQWIRISVGSTELQANKDVTQRFILTQE-----------------------  329

Query  474  NTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGP  533
                               K +   + ++EH+ ++ ++FC+ K   D LE+   + G   
Sbjct  330  -----------------FAKQDELRKLMQEHREERVLVFCKMKRTADELERQLRRWG---  369

Query  534  DKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP  593
                  +  + +HGD++  +R+  L RF+K     L+ TDVAARG+DI  +  VIN   P
Sbjct  370  ------YDAMAIHGDKEQRQREFILARFRKDPRLCLVATDVAARGLDIKQLETVINYDFP  423

Query  594  DEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWY  653
             +  +YVHRIGR GRA   G  + L+  ++ ++   V           + +       W 
Sbjct  424  MQIDDYVHRIGRTGRAGGEGRCVYLITKKEAQITPSVLKELIGILERAQQEIPDWMIEWN  483

Query  654  NEMQLLS  660
             +     
Sbjct  484  AQQPRYQ  490


 Score = 99.8 bits (247),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 6/113 (5%)

Query  1    MAAFSEMG--VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSI  58
            M++F  +   V P + + +   ++  PT +QA+S P++L G D++  A+TGSGKT  F +
Sbjct  99   MSSFDHLCGIVPPYLLKKLTAQNFTAPTPVQAQSWPVLLSGRDLVGVAKTGSGKTLGFMV  158

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
            P +  +      Q+  + G   +    +   +      +       G     C
Sbjct  159  PALAHI----AVQEPLRSGDGPMVVVLAPTRELAQQIEEETKKVIPGDVYCGC  207


>sp|Q0CMM8|DBP10_ASPTN ATP-dependent RNA helicase dbp10 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dbp10 
PE=3 SV=1
Length=928

 Score = 305 bits (781),  Expect = 5e-90, Method: Composition-based stats.
 Identities = 118/501 (24%), Positives = 189/501 (38%), Gaps = 47/501 (9%)

Query  222  MKNQALFPACVLKNAELKFNFGEEEFKFPPKDGF------------VALSKAPDGYIVKS  269
            +K    F A  L    LK     + F  P                 V +++   G     
Sbjct  85   VKKGGGFQAMGLNANLLK-AITRKGFSVPTPIQRKTIPVIMDDRDVVGMARTGSGKTAAF  143

Query  270  QHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAA  329
                  ++        A + LI+ PSRELA QTL  +K+  K      L+ +L++GG + 
Sbjct  144  VIPMIEKLKSHSSKFGA-RGLILSPSRELALQTLKVVKELGK---GTDLKSVLLVGGDSL  199

Query  330  RDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHN  389
             +Q  ++    DIV+ TPGR   L     L+LS +R++V DEAD L   G++  +  + +
Sbjct  200  EEQFGMMAGNPDIVIATPGRFLHLKVEMNLDLSSIRYVVFDEADRLFEMGFAAQLTEILH  259

Query  390  QIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN  449
             +P         Q ++ SATL    V+  +   +  PT + L  E  +   + +    V 
Sbjct  260  GLPTT------RQTLLFSATLPKSLVE-FARAGLQEPTLIRLDTESKISPDLQNAFFSVK  312

Query  450  PKTDR-----LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
                      +   + K      +V  +       +     S+  K  + + AV   +  
Sbjct  313  SADKEGALLYILHEVIKMPTGPTEVAQRLQEEKANSKDSKNSKKRKRSEMDKAVNMKESP  372

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
                 I+F  TK   D L     + G         F+    +G      RK  +  F+ G
Sbjct  373  TKHSTIVFAATKHHVDYLYSLLREAG---------FAVSYAYGSLDQTARKIQVNNFRTG  423

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
                L+ TDVAARGIDI  +  VIN   P + + +VHR+GR  RA R G + SLV     
Sbjct  424  LSNILVVTDVAARGIDIPILANVINYDFPSQPKIFVHRVGRTARAGRKGWSYSLVRDADA  483

Query  625  KVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEF  684
                 +    G+     R  E G    +  ++ +     + L      V   +    D F
Sbjct  484  PYLLDLQLFLGRRLVLGR--EHGDQVDYAEDVVVGGFPRDSLAQNCEWVTRVLDDNRDIF  541

Query  685  -------DGKVTYGQKRAAGG  698
                    G+  Y + R A  
Sbjct  542  SQRTVATKGEKLYMRTRNAAS  562


 Score = 101 bits (251),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 28/104 (27%), Positives = 45/104 (43%), Gaps = 7/104 (7%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F  MG+   + +A+    + +PT IQ ++IP+I+   DV+  A TGSGKT AF IP+I+ 
Sbjct  91   FQAMGLNANLLKAITRKGFSVPTPIQRKTIPVIMDDRDVVGMARTGSGKTAAFVIPMIEK  150

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            +                     S   +  +           G+D
Sbjct  151  LKSHSSKF-------GARGLILSPSRELALQTLKVVKELGKGTD  187


>sp|C4LB49|RHLB_TOLAT ATP-dependent RNA helicase RhlB OS=Tolumonas 
auensis (strain DSM 9187 / TA4) OX=595494 GN=rhlB PE=3 
SV=1
Length=425

 Score = 291 bits (745),  Expect = 5e-90, Method: Composition-based stats.
 Identities = 102/428 (24%), Positives = 172/428 (40%), Gaps = 69/428 (16%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
              +LGL  ++   ++ +       ++   +                    ++   G  + 
Sbjct  11   FAELGLEPQVLAGVEAKGFHNCTPIQAETIPLLL--------TGKNIAGQAQTGTGKTIA  62

Query  269  SQHSG-NAQVTQT---KFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
                  N  +T +   +   N P+ LI+ P+RELA Q  N+     +       +  L  
Sbjct  63   FLAGTFNYLLTHSASAERRQNQPRVLIMAPTRELAVQIYNDAVPMSESCG---FKMGLAY  119

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG     QL+VL+ GVD+++GT GR+ D +  G ++L  ++ +VLDEAD +   G+   I
Sbjct  120  GGDGYDKQLAVLQEGVDLLIGTTGRIIDYLKQGIIDLGAIQVVVLDEADRMFDLGFIKDI  179

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
              +  ++P       +   ++ SATL S  V++L+ + M+ P  + ++ E      +   
Sbjct  180  RFLFRRMP----PPAQRLNMLFSATL-SLRVQELAYEHMNEPQHIQIEPEQMTGQRIK--  232

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
                                                  E         K    +  ++E 
Sbjct  233  --------------------------------------EELFYPSNEDKMLLLLTLMEED  254

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
              ++AIIF  TK  C+++  +    G              L GD    +R + LE F  G
Sbjct  255  WPEKAIIFANTKHGCEDVHAWLQADG---------HRVGLLTGDVPQKKRLKILEDFTAG  305

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
             +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA R G AIS    +  
Sbjct  306  LLDVLVATDVAARGLHIPDVSHVFNYDLPDDAEDYVHRIGRTGRAGRSGHAISFACEDYA  365

Query  625  KVWYHVCS  632
                 +  
Sbjct  366  FNLPEIEE  373


 Score = 104 bits (259),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 59/352 (17%), Positives = 117/352 (33%), Gaps = 56/352 (16%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F+E+G+ P++   VE   +   T IQAE+IPL+L G ++   A+TG+GKT AF      
Sbjct  10   TFAELGLEPQVLAGVEAKGFHNCTPIQAETIPLLLTGKNIAGQAQTGTGKTIAFLAGTFN  69

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGC  122
             +       +  ++         +   +  +  Y+               +  + E  G 
Sbjct  70   YLLTHSASAE--RRQNQPRVLIMAPTRELAVQIYN--------------DAVPMSESCGF  113

Query  123  RATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNY  182
            +         +  +++   +G+           L +GT        G       +   + 
Sbjct  114  KMGLAYGGDGYDKQLAVLQEGV----------DLLIGTT-------GRIIDYLKQGIIDL  156

Query  183  GEEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFEI---PPHMKNQALFPACVLKNAEL  238
            G        I   + +D+    F     KD+   F     P    N        L+  EL
Sbjct  157  GA-------IQVVV-LDEADRMFDLGFIKDIRFLFRRMPPPAQRLNMLFSATLSLRVQEL  208

Query  239  KFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSREL  298
             +    E      +   +   +  +     S       +          KA+I   ++  
Sbjct  209  AYEHMNEPQHIQIEPEQMTGQRIKEELFYPSNEDKMLLLLTLMEEDWPEKAIIFANTK--  266

Query  299  AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                 +  +    ++     R  L+ G V  + +L +LE+     +D++V T
Sbjct  267  -----HGCEDVHAWLQADGHRVGLLTGDVPQKKRLKILEDFTAGLLDVLVAT  313


>sp|A3LQW7|DBP2_PICST ATP-dependent RNA helicase DBP2 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DBP2 PE=3 SV=1
Length=530

 Score = 295 bits (754),  Expect = 6e-90, Method: Composition-based stats.
 Identities = 99/389 (25%), Positives = 156/389 (40%), Gaps = 67/389 (17%)

Query  218  IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQV  277
            +   +K Q       ++                     V ++    G  +         +
Sbjct  108  VLNEVKAQGFPSPTAIQCQGWPMALS--------GRDMVGIAATGSGKTLSYCLPAIVHI  159

Query  278  TQTKFLP--NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
                 L   + P  L++ P+RELA Q         K+  + ++R   + GG     Q+  
Sbjct  160  NAQPLLSPGDGPVVLVLAPTRELAVQIQQEC---SKFGSSSRIRNTCVYGGAPKGQQIRD  216

Query  336  LENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
            L  GV+IV+ TPGRL D++  GK NL +V +LVLDEAD +L  G+   I ++ +QI    
Sbjct  217  LARGVEIVIATPGRLIDMLEMGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQI----  272

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG-EDSVPDTVHHVVVPVNPKTDR  454
                  Q ++ SAT    +V+ L+   +  P  V +   E +   T+  VV         
Sbjct  273  --RPDRQTLMWSATWPK-EVQNLARDYLQDPIQVRIGSLELAASHTITQVV---------  320

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
                                        E+ SE  K  +    +      K  + +IF  
Sbjct  321  ----------------------------EVISEYEKRDRLVKHLETATTEKESKVLIFAS  352

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
            TK  CD +  Y    G         +  + +HGD++  ER   L  FK G    ++ TDV
Sbjct  353  TKKTCDEVTSYLRADG---------WPALAIHGDKQQSERDWVLREFKTGKSPIMVATDV  403

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRI  603
            AARGID+ G+ +VIN  +P   ++YVHRI
Sbjct  404  AARGIDVKGINFVINFDMPGNIEDYVHRI  432


 Score = 97.5 bits (241),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 26/106 (25%), Positives = 42/106 (40%), Gaps = 4/106 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E G    +   V+   +  PT IQ +  P+ L G D++  A TGSGKT ++ +P 
Sbjct  96   ITTFDEAGFPEYVLNEVKAQGFPSPTAIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPA  155

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            I  +      Q     G   +    +   +  +      S F   S
Sbjct  156  IVHI----NAQPLLSPGDGPVVLVLAPTRELAVQIQQECSKFGSSS  197


>sp|Q9SZB4|RH43_ARATH Putative DEAD-box ATP-dependent RNA helicase 
43 OS=Arabidopsis thaliana OX=3702 GN=RH43 PE=3 SV=1
Length=542

 Score = 295 bits (755),  Expect = 6e-90, Method: Composition-based stats.
 Identities = 117/511 (23%), Positives = 200/511 (39%), Gaps = 77/511 (15%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            KN  D+     +   +K++ +     ++   L                 + ++    G  
Sbjct  97   KNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLS--------GRDMIGIAFTGSGKT  148

Query  267  VKSQHSGNAQVTQTKFLPN-----APKALIVEPSRELAEQTLNNIKQFKKYI---DNPKL  318
            +           Q + +        P AL++ PSRELA+QT + ++QF   +     P+L
Sbjct  149  LVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRL  208

Query  319  RELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQ  378
            R LL IGGV  R QL V++ GV IVV TPGRL D+++  K++L   R L LDEAD L+  
Sbjct  209  RSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDL  268

Query  379  GYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVP  438
            G+ D I  + +          + Q ++ SAT+    ++  +   +  P  V++    +  
Sbjct  269  GFEDDIRHVFDHF------KSQRQTLLFSATMP-AKIQIFATSALVKPVTVNVGRAGAAN  321

Query  439  DTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAV  498
              V   V  V  +                                         K  Y +
Sbjct  322  LDVIQEVEYVKQEA----------------------------------------KIVYLL  341

Query  499  RAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNL  558
              +++      +IFC  K D D++ +Y + +G            V +HG +   +R   +
Sbjct  342  ECLQKTTP-PVLIFCENKADVDDIHEYLLLKG---------VEAVAIHGGKDQEDRDYAI  391

Query  559  ERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
              FK G    L+ TDVA++G+D   + +VIN  +P E +NYVHRIGR GR  + G+A + 
Sbjct  392  SLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTF  451

Query  619  VATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTI--SQVEPD  676
            +   + ++         +                  E + ++       C          
Sbjct  452  INKNQSEITLLDLKHLLQEAKQRIPPVLAELNGPMEETETIANASGVKGCAYCGGLGHRI  511

Query  677  IKVPVDEFDGKV--TYGQKRAAGGGSYKGHV  705
            ++ P  E    V  +  +K   G   Y+G V
Sbjct  512  LQCPKFEHQKSVAISSSRKDHFGSDGYRGEV  542


 Score = 94.8 bits (234),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 54/148 (36%), Gaps = 18/148 (12%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F +M     + + +++   + PT IQ + +P++L G D++  A TGSGKT  F +P+
Sbjct  96   IKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPM  155

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDG---------LCC  111
            I +  +          G+  I        +     YD    F               LC 
Sbjct  156  IILALQEE-IMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCI  214

Query  112  Q--------SREVKEWHGCRATKGLMKG  131
                         K  H   AT G +K 
Sbjct  215  GGVDMRSQLDVVKKGVHIVVATPGRLKD  242


>sp|Q6CSZ7|DHH1_KLULA ATP-dependent RNA helicase DHH1 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DHH1 PE=3 SV=1
Length=514

 Score = 294 bits (752),  Expect = 7e-90, Method: Composition-based stats.
 Identities = 113/479 (24%), Positives = 187/479 (39%), Gaps = 88/479 (18%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            ++ +D  L  E+   +          ++   +               G   L++A +G  
Sbjct  36   RSFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVA----------IAGKDILARAKNG-T  84

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             K+       + + K   N  +ALI+ P+RELA QT   ++   K+     +  ++  GG
Sbjct  85   GKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCG---ISCMVTTGG  141

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
               RD +  L   V I+VGTPGR+ DL S    +LS+    ++DEAD +LS+ +     +
Sbjct  142  TNLRDDIMRLNEPVHILVGTPGRVLDLASRRVTDLSECHLFIMDEADKMLSRDFKVLAEQ  201

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVV  446
            +   +P      +R Q+++ SAT     VK+   K +  P  ++L  E ++   +     
Sbjct  202  ILGFLP------ERRQLLLFSATFP-VTVKEFMVKHLKNPHEINLMDELTLK-GISQFYA  253

Query  447  PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM  506
             V  K                                         K         + ++
Sbjct  254  FVEEKQ----------------------------------------KLHCLNTLFSKLQI  273

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
            +QAIIFC +    + L +   + G         FSC   H   K  ER +    F++G V
Sbjct  274  NQAIIFCNSTNRVELLAKKITELG---------FSCYYSHARMKQSERNKVFHEFRQGKV  324

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
            R L+C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR   +GLAI+L+       
Sbjct  325  RTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFN  384

Query  627  WYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFD  685
             Y +         NT +              + S+I++ L          I  P++   
Sbjct  385  LYKIEQEL-----NTEI------------APIPSQIDKSLYVAEDSSAVPIPFPLESLP  426


 Score = 99.0 bits (245),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 24/93 (26%), Positives = 41/93 (44%), Gaps = 9/93 (10%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +F +  +  E+   + E  +  P+ IQ E+IP+ + G D+L  A+ G+GKT AF IP +
Sbjct  36   RSFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAIAGKDILARAKNGTGKTAAFVIPTL  95

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
            + V   L   Q                 +  + 
Sbjct  96   EKVKPKLNKIQ---------ALIMVPTRELALQ  119


>sp|A1CJ18|DHH1_ASPCL ATP-dependent RNA helicase dhh1 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dhh1 PE=3 SV=1
Length=503

 Score = 293 bits (751),  Expect = 7e-90, Method: Composition-based stats.
 Identities = 115/479 (24%), Positives = 180/479 (38%), Gaps = 70/479 (15%)

Query  213  GLAFEIP--PHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            GL FE           +F A   K + +     +EE       G   L++A +G   K+ 
Sbjct  46   GLEFEDFYIKRELMMGIFEAGFEKPSPI-----QEETIPVALTGRDILARAKNG-TGKTA  99

Query  271  HSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
                  + +        +ALI+ P+RELA QT    K   K++    +  ++  GG    
Sbjct  100  AFVIPTLERINPKSTKTQALILVPTRELALQTSQVCKTLGKHLG---INVMVTTGGTGLM  156

Query  331  DQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ  390
            D +  L + V I+VGTPGR+ DL S G  +LS+    V+DEAD LLS  ++  I ++ + 
Sbjct  157  DDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSF  216

Query  391  IPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNP  450
             P      K  QV++ SAT     VK   +K M  P  ++L  ++     +      V  
Sbjct  217  HP------KDRQVMLFSATFP-LIVKSFKDKHMRNPYEINLM-DELTLRGITQYYAFVEE  268

Query  451  KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAI  510
            K                                         K         + +++Q+I
Sbjct  269  KQ----------------------------------------KVHCLNTLFSKLQINQSI  288

Query  511  IFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLI  570
            IFC +    + L +   + G         +SC   H       R +    F+ G  R L+
Sbjct  289  IFCNSTNRVELLAKKITELG---------YSCFYSHARMLQQHRNRVFHDFRNGVCRNLV  339

Query  571  CTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
            C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR   +GLAI+L+  E     Y +
Sbjct  340  CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYKI  399

Query  631  CSSRGKGCYNT--RLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGK  687
                G         + +          +         L      V  + +       G+
Sbjct  400  EQELGTEIQPIPQNIDKKLYVYDSPETIPRPISNPPQLRQATQSVTAERRHQNHANSGQ  458


 Score = 97.5 bits (241),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 40/91 (44%), Gaps = 9/91 (10%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +  +  E+   + E  +  P+ IQ E+IP+ L G D+L  A+ G+GKT AF IP ++ 
Sbjct  49   FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER  108

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
            +           K   T         +  + 
Sbjct  109  I---------NPKSTKTQALILVPTRELALQ  130


>sp|Q6BRN4|IF4A_DEBHA ATP-dependent RNA helicase eIF4A OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 
/ JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=TIF1 PE=3 SV=1
Length=397

 Score = 290 bits (742),  Expect = 7e-90, Method: Composition-based stats.
 Identities = 109/427 (26%), Positives = 183/427 (43%), Gaps = 71/427 (17%)

Query  227  LFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN------AQVT  278
             F    LK   ++  F +G E      +   + +++  D        +G       + + 
Sbjct  24   TFDDLNLKPNIVRGIFGYGYESPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQ  83

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            +      + +ALI+ P+RELA Q  N I     Y++   +     IGG + +D +   ++
Sbjct  84   RIDENEKSTQALILAPTRELALQIQNVITHIGLYLN---VTVHASIGGTSMKDDIEAFKS  140

Query  339  GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
            GV IVVGTPGR+ D++        +V+  +LDEAD +LS G+ + I  +   +P+ T   
Sbjct  141  GVQIVVGTPGRVFDMIERRFFKTDKVKMFILDEADEMLSSGFKEQIYNIFRLLPETT---  197

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER  458
               QV++ SAT+   DV +++ K M+ P  + +K ++   + +    + V  +       
Sbjct  198  ---QVVLLSATMP-QDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVEQED------  247

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
                                              K +          + QA+IFC T+  
Sbjct  248  ---------------------------------YKFDCLCDLYDSISVTQAVIFCNTRSK  274

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
             + L             KG  F+   +H D    +R   +  F+ G  R LI TD+ ARG
Sbjct  275  VEFLTTKL---------KGENFTVSAIHADLPQADRDTIMNEFRSGSSRILISTDLLARG  325

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGC  638
            ID+  V  VIN  LP  K+NY+HRIGR GR  R G+AI+ V  +   +   +        
Sbjct  326  IDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDQDVGMMREIEK-----F  380

Query  639  YNTRLKE  645
            Y+T+++E
Sbjct  381  YSTQIEE  387


 Score = 95.2 bits (235),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 23/102 (23%), Positives = 43/102 (42%), Gaps = 9/102 (9%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F ++ + P I + +    +  P+ IQ  +I  I  G DVL  A++G+GKT  F+I  +Q
Sbjct  24   TFDDLNLKPNIVRGIFGYGYESPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQ  83

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
             + E  K  Q             +   +  +   +  +   +
Sbjct  84   RIDENEKSTQ---------ALILAPTRELALQIQNVITHIGL  116


>sp|A2QY39|DHH1_ASPNC ATP-dependent RNA helicase dhh1 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=dhh1 PE=3 SV=1
Length=505

 Score = 293 bits (751),  Expect = 8e-90, Method: Composition-based stats.
 Identities = 112/425 (26%), Positives = 172/425 (40%), Gaps = 68/425 (16%)

Query  213  GLAFEIP--PHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            GL FE           +F A   K + +     +EE       G   L++A +G   K+ 
Sbjct  46   GLEFEDFYIKRELMMGIFEAGFEKPSPI-----QEETIPVALTGRDILARAKNG-TGKTA  99

Query  271  HSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
                  + +        +ALI+ P+RELA QT +  K   K++    +  ++  GG    
Sbjct  100  AFVIPTLERINPKSTKTQALILVPTRELALQTSHVCKTLGKHLG---INVMVTTGGTGLM  156

Query  331  DQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ  390
            D +  L + V I+VGTPGR+ DL S G  +LS+    V+DEAD LLS  ++  I ++ + 
Sbjct  157  DDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSF  216

Query  391  IPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNP  450
             P      K  QV++ SAT     VK   +K M  P  ++L  ++     +      V  
Sbjct  217  HP------KDRQVMLFSATFP-LIVKSFKDKHMRNPYEINLM-DELTLRGITQYYAFVEE  268

Query  451  KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAI  510
            K                                         K         + +++Q+I
Sbjct  269  KQ----------------------------------------KVHCLNTLFSKLQINQSI  288

Query  511  IFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLI  570
            IFC +    + L +   + G         +SC   H       R +    F+ G  R L+
Sbjct  289  IFCNSTNRVELLAKKITELG---------YSCFYSHARMLQQHRNRVFHDFRNGVCRNLV  339

Query  571  CTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
            C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR   +GLAI+L+  E     Y +
Sbjct  340  CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYKI  399

Query  631  CSSRG  635
                G
Sbjct  400  EQELG  404


 Score = 97.9 bits (242),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 40/91 (44%), Gaps = 9/91 (10%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +  +  E+   + E  +  P+ IQ E+IP+ L G D+L  A+ G+GKT AF IP ++ 
Sbjct  49   FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER  108

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
            +           K   T         +  + 
Sbjct  109  I---------NPKSTKTQALILVPTRELALQ  130


>sp|P0CQ79|DBP3_CRYNB ATP-dependent RNA helicase DBP3 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=DBP3 PE=3 SV=1
Length=605

 Score = 297 bits (759),  Expect = 8e-90, Method: Composition-based stats.
 Identities = 108/434 (25%), Positives = 175/434 (40%), Gaps = 71/434 (16%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFL----------PNAPKALIVEPSR  296
                 K   V +++   G  +     G   ++Q   +          P   + L++ P+R
Sbjct  205  PALLSKKDVVGIAETGSGKTLAFGVPGINLLSQLPPVTGSKKGRGQVPGQIQMLVLAPTR  264

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL-ENGVDIVVGTPGRLDDLVS  355
            ELA+Q+  +      + +   L+ + I GGV    Q   L +    +VVGTPGR  DL  
Sbjct  265  ELAQQSHEH---LSAFGEQVGLKSVCIFGGVGKDGQARELSQKDTRVVVGTPGRTLDLAD  321

Query  356  TGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDV  415
            +G+L+LS V +LVLDEAD +L  G+ + I R+    P      +  Q ++ SAT     V
Sbjct  322  SGELDLSSVSYLVLDEADRMLDAGFENDIRRIIAHTP---GHKEGRQTVMFSATWP-ESV  377

Query  416  KKLSEKIMHFPTWVDLKGED-SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDN  474
            ++L+   ++ P  + +  ++ S    +  +V  ++   D+ +                  
Sbjct  378  RRLASTFLNNPLRITVGSDELSANKRIEQIVEVLDNPRDKDF------------------  419

Query  475  TRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPD  534
                             LK    V    +    + ++F   K +   LE    + G    
Sbjct  420  ------------RLTHHLKAHLKVHPNSKTSPTRILVFALYKKEAQRLEYTIRRAG----  463

Query  535  KKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD  594
                 ++   LHGD     R + LE FK G    L+ TDVAARG+DI  V  VINVT P 
Sbjct  464  -----YAVGALHGDMTQEARFKALEAFKTGQQNVLVATDVAARGLDIPDVGLVINVTFPL  518

Query  595  EKQNYVHRIGRVGRAERMGLAISLVATEK-------------EKVWYHVCSSRGKGCYNT  641
              +++VHR GR GRA + G A++    E                V   +     +     
Sbjct  519  TTEDFVHRCGRTGRAGKTGKAVTFFTGENHEKSLAGEFMRVLRDVGAEIPKEMDRFPTTI  578

Query  642  RLKEDGGCTIWYNE  655
            + KE G    +Y E
Sbjct  579  KKKEHGSYGAFYKE  592


 Score = 80.9 bits (198),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 29/108 (27%), Positives = 48/108 (44%), Gaps = 8/108 (7%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +  ++ +  ++   + +  +  PT IQA S P +L   DV+  AETGSGKT AF +P 
Sbjct  174  LLSIRDLPINSKLQPFLNK--FEKPTPIQACSWPALLSKKDVVGIAETGSGKTLAFGVPG  231

Query  61   IQIVYETLKDQQEGKKGKTTIKTGAS-----VLNKWQMNPYDRGSAFA  103
            I  +   L      KKG+  +             +     ++  SAF 
Sbjct  232  IN-LLSQLPPVTGSKKGRGQVPGQIQMLVLAPTRELAQQSHEHLSAFG  278


>sp|Q9NXZ2|DDX43_HUMAN Probable ATP-dependent RNA helicase DDX43 
OS=Homo sapiens OX=9606 GN=DDX43 PE=1 SV=2
Length=648

 Score = 298 bits (762),  Expect = 8e-90, Method: Composition-based stats.
 Identities = 111/474 (23%), Positives = 181/474 (38%), Gaps = 76/474 (16%)

Query  198  IDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVA  257
            I      F    +      E+  ++K         +++                    + 
Sbjct  236  IPNPTCTFDDAFQCYP---EVMENIKKAGFQKPTPIQSQAWPIVL--------QGIDLIG  284

Query  258  LSKAPDGYIVKSQHSGNAQVTQ---TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYID  314
            +++   G  +     G   +      K   N P  L++ P+RELA Q      ++     
Sbjct  285  VAQTGTGKTLCYLMPGFIHLVLQPSLKGQRNRPGMLVLTPTRELALQVEGECCKYS----  340

Query  315  NPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADG  374
               LR + + GG    +Q+  L+ GVDI++ TPGRL+DL  +  +NL  + +LVLDEAD 
Sbjct  341  YKGLRSVCVYGGGNRDEQIEELKKGVDIIIATPGRLNDLQMSNFVNLKNITYLVLDEADK  400

Query  375  LLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE  434
            +L  G+   I ++              Q ++ SAT     V +L++  +  P  V +   
Sbjct  401  MLDMGFEPQIMKIL------LDVRPDRQTVMTSATWP-HSVHRLAQSYLKEPMIVYVGTL  453

Query  435  DSV-PDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK  493
            D V   +V   ++    +                               E WS     L+
Sbjct  454  DLVAVSSVKQNIIVTTEE-------------------------------EKWSHMQTFLQ  482

Query  494  GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
                         D+ I+F   K   D+L    I             S   LHGDR+  +
Sbjct  483  S--------MSSTDKVIVFVSRKAVADHLSSDLIL---------GNISVESLHGDREQRD  525

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
            R++ LE FK G VR LI TD+A+RG+D+H V +V N   P   + YVHRIGR GRA R G
Sbjct  526  REKALENFKTGKVRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTG  585

Query  614  LAISLVATEKEKVWYHVCS--SRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEH  665
            ++I+ +     +V   + +   R        L         + + + +    E 
Sbjct  586  VSITTLTRNDWRVASELINILERANQSIPEELVSMAERFKAHQQKREMERKMER  639


 Score = 91.7 bits (226),  Expect = 8e-18, Method: Composition-based stats.
 Identities = 23/111 (21%), Positives = 50/111 (45%), Gaps = 6/111 (5%)

Query  3    AFSE-MGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP-V  60
             F +     PE+ + +++  +  PT IQ+++ P++L G D++  A+TG+GKT  + +P  
Sbjct  242  TFDDAFQCYPEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGF  301

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
            I +V +     Q  + G   +    +   +  +        ++       C
Sbjct  302  IHLVLQPSLKGQRNRPGMLVL----TPTRELALQVEGECCKYSYKGLRSVC  348


>sp|Q7S9J4|DBP10_NEUCR ATP-dependent RNA helicase dbp-10 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 
/ DSM 1257 / FGSC 987) OX=367110 GN=dbp-10 PE=3 SV=1
Length=934

 Score = 305 bits (780),  Expect = 8e-90, Method: Composition-based stats.
 Identities = 115/509 (23%), Positives = 197/509 (39%), Gaps = 39/509 (8%)

Query  220  PHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQ  279
              +K    F A  L    L+     + F  P      A+    +   V       +  T 
Sbjct  93   KSVKKGGGFQAMGLNAHLLR-AITRKGFSVPTPIQRKAIPLILERKDVVGMARTGSGKTA  151

Query  280  TKFLP-------NAPK----ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
               +P       ++P+    ALI+ PSRELA QTL  +K+  +      L+ +L++GG +
Sbjct  152  AFVIPMIERLKGHSPRVGSRALIMSPSRELALQTLKVVKELGR---GTDLKTVLLVGGDS  208

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
              +Q  ++ +  DI++ TPGR   L     L+L+ ++++V DEAD L   G++  +  + 
Sbjct  209  LEEQFGMMASNPDIIIATPGRFLHLKVEMNLSLASIKYVVFDEADRLFEMGFATELTEIL  268

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
            + +P         Q ++ SATL S  V+  +   +  P+ V L  E  V   +      V
Sbjct  269  HALP------PSRQTLLFSATLPSSLVE-FARAGLQEPSLVRLDAETKVSPDLESAFFAV  321

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
                 +  E+ G       DV       P     E      +  K EY     ++     
Sbjct  322  -----KGGEKEGALLHLLHDVIKVPLGPPEGTKEESDELQARKRKREYRPNPKEKPTEYS  376

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
             IIF  TK   + +       G         F+   ++G      R   ++ F++G    
Sbjct  377  TIIFTATKHHVEYIANLLKLAG---------FAVSYVYGSLDQTARLIQVDNFRRGRTHI  427

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            L+ TDVAARGID+  +  VIN   P + + +VHR+GR  RA + G A  LV         
Sbjct  428  LVVTDVAARGIDMPALANVINYDFPSQPKIFVHRVGRTARAGQRGWAYGLVRQSDVPYLL  487

Query  629  HVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKV  688
             +    G+      +  D     +  ++ + +   + ++  I  VE  +K   D    K 
Sbjct  488  DLQLFLGRKLI---IGHDQKNPSFAADVVVGTLKRDGVDVNIEWVEKALKESADLKALKG  544

Query  689  TYGQKRAAGGGSYKGHVDILAPTVQELAA  717
               +       +        A   +E+  
Sbjct  545  VAAKAEKLYMKTRNSASSQSAKRAREVTQ  573


 Score = 100 bits (249),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 30/104 (29%), Positives = 46/104 (44%), Gaps = 7/104 (7%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F  MG+   + +A+    + +PT IQ ++IPLIL   DV+  A TGSGKT AF IP+I+ 
Sbjct  101  FQAMGLNAHLLRAITRKGFSVPTPIQRKAIPLILERKDVVGMARTGSGKTAAFVIPMIER  160

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            +               +     S   +  +           G+D
Sbjct  161  LKGHSPRV-------GSRALIMSPSRELALQTLKVVKELGRGTD  197


>sp|Q0E3X4|RH35A_ORYSJ DEAD-box ATP-dependent RNA helicase 35A 
OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0150100 PE=2 
SV=2
Length=627

 Score = 297 bits (760),  Expect = 9e-90, Method: Composition-based stats.
 Identities = 103/379 (27%), Positives = 166/379 (44%), Gaps = 60/379 (16%)

Query  286  APKALIVEPSRELAEQTLNNIKQFK---KYIDNPKLRELLIIGGVAARDQLSVLENGVDI  342
             P  +I+ PSRELA+QT + I+QF    K    P++R LL IGGV  R QL V++ GV I
Sbjct  258  GPFGMIICPSRELAKQTYDVIEQFLVPLKEAGYPEIRPLLCIGGVDMRAQLDVVKKGVHI  317

Query  343  VVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            VV TPGRL DL++  K+NL   R+L LDEAD L+  G+ D I  + +          + Q
Sbjct  318  VVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF------KAQRQ  371

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
             ++ SAT+    ++  ++  +  P  V++    +    V   V  V      +       
Sbjct  372  TLLFSATMPK-KIQNFAKSALVKPVIVNVGRAGAANLDVIQEVEYVKEDARII-------  423

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
                                             Y +  +++      ++FC  K D D +
Sbjct  424  ---------------------------------YLLECLQKTPP-PVLVFCENKADVDYI  449

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
             +Y + +G            V +HG +   ER+  +E FK G    L+ TDVA++G+D  
Sbjct  450  HEYLLLKG---------VEAVAIHGGKDQEERENAIEFFKNGKKDVLVATDVASKGLDFP  500

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTR  642
             + +VIN  +P E +NYVHRIGR GR  + G+A + +   + +          K      
Sbjct  501  DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRI  560

Query  643  LKEDGGCTIWYNEMQLLSE  661
                        + + +++
Sbjct  561  PPVLAELNDPLEDEETMAK  579


 Score = 92.5 bits (228),  Expect = 4e-18, Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 1/99 (1%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F ++ +   + + + E   + PT IQ + +P++L G D++  A TGSGKT  F +P+I +
Sbjct  184  FRDLRLPEPMLRKLREKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIMV  243

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
              +          G+           +     YD    F
Sbjct  244  ALQEEM-MMPIVPGEGPFGMIICPSRELAKQTYDVIEQF  281


>sp|Q5AWA6|DBP3_EMENI ATP-dependent RNA helicase dbp3 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=dbp3 PE=3 SV=2
Length=488

 Score = 293 bits (749),  Expect = 9e-90, Method: Composition-based stats.
 Identities = 110/418 (26%), Positives = 174/418 (42%), Gaps = 74/418 (18%)

Query  225  QALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP  284
                    +++A     F             + +++   G  +        +V   K   
Sbjct  91   DGFASPTAIQSATWPLLFA--------GRDVIGIAETGSGKTLAFGLPCLKKVLDLKTKQ  142

Query  285  NA--PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDI  342
             +  P A+++ P+RELA Q  +   Q  K+ +   ++   I GGV   +Q   L++   +
Sbjct  143  KSCRPLAVVISPTRELAMQIYD---QLVKFAEKVDIQVACIFGGVKKDEQREALKSAA-V  198

Query  343  VVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            VV TPGRL DL + G L+L +V++LVLDEAD +L +G+   I  + + +P       + Q
Sbjct  199  VVATPGRLKDLQNDGSLDLGRVKYLVLDEADRMLDKGFEQDIKDIISPMPV-----SKRQ  253

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSV----PDTVHHVVVPVNP--KTDRLW  456
             ++ +AT     V+ L+   M  P  V + G+ S        +  VV  V P  K  RL 
Sbjct  254  TVMFTATWPPI-VRNLASTFMTSPVTVTIGGDPSADPRANSRIKQVVEVVKPHEKEQRLV  312

Query  457  ERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTK  516
            + L +                                        +    D+ + FC  K
Sbjct  313  QILNRH---------------------------------------QRGTPDKVLAFCLYK  333

Query  517  IDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAA  576
             +   +E+    +G         F    +HGD    ER ++LE FK G    L+ TDVAA
Sbjct  334  KEAMRVERLLRTKG---------FKVAGIHGDLSQQERFRSLEAFKSGAATVLVATDVAA  384

Query  577  RGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            RG+DI  V  V+NVT P   ++YVHRIGR GRA   G AI+L     +     + +  
Sbjct  385  RGLDIPHVKLVVNVTFPLTVEDYVHRIGRTGRAGADGHAITLFTETDKAQSGALINVL  442


 Score = 100 bits (249),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 14/121 (12%)

Query  21   DWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTT  80
             +  PT IQ+ + PL+  G DV+  AETGSGKT AF +P ++ V + LK +Q+  +    
Sbjct  92   GFASPTAIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKVLD-LKTKQKSCRPLAV  150

Query  81   IKTGASVLNKWQMNPYDRGSAFAIGSD-GLCC---------QSREVKEWHGCRATKGLMK  130
            +    S   +  M  YD+   FA   D  + C         Q   +K      AT G +K
Sbjct  151  V---ISPTRELAMQIYDQLVKFAEKVDIQVACIFGGVKKDEQREALKSAAVVVATPGRLK  207

Query  131  G  131
             
Sbjct  208  D  208


>sp|B6EPA4|RHLB_ALISL ATP-dependent RNA helicase RhlB OS=Aliivibrio 
salmonicida (strain LFI1238) OX=316275 GN=rhlB PE=3 SV=1
Length=434

 Score = 291 bits (745),  Expect = 9e-90, Method: Composition-based stats.
 Identities = 120/510 (24%), Positives = 199/510 (39%), Gaps = 91/510 (18%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGF---VALSKAPDGY  265
              DLGL  ++   +  +       ++   L      ++     + G    +A   A   +
Sbjct  11   FADLGLEPQVLDGLNAKGFINCTPIQAKALPVLLAGQDIAGQAQTGTGKTLAFLAATFNH  70

Query  266  IVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
            ++ +      ++TQ       P+A+I+ P+RELA Q  N+ +     I +  L+  L  G
Sbjct  71   LLTTPAPEGRKITQ-------PRAIIMAPTRELAIQIYNDAESL---IASTGLKAALAYG  120

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            G     Q  V+E GVDI++GT GR+ D    G+++   ++ +VLDEAD +   G+   I 
Sbjct  121  GERYEKQQKVIEAGVDILIGTTGRIIDFYKQGQIDFKAIQVVVLDEADRMFDLGFIKDIR  180

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-HHV  444
             +  ++P           ++ SATL S+ V++L+ + M  P  V ++ +      +   +
Sbjct  181  FVFRRMPAPA----ERLNMLFSATL-SYRVQELAFEHMQEPEHVVVEPDQKTGHLITEEL  235

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
              P N     L + L                                         I+E 
Sbjct  236  FYPSNDHKMALLQTL-----------------------------------------IEEE  254

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
              D+AIIF  TK  C+ +  +             +     L GD    +R++ LE F KG
Sbjct  255  WPDRAIIFANTKHKCELVWGHL---------AADKHRVGLLTGDVPQKKRERILEEFTKG  305

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            +V  L+ TDVAARG+ I  V +V N  LP+E ++YVHRIGR GRA   G +IS    E  
Sbjct  306  EVDILVATDVAARGLHIPQVTHVFNFDLPNEAEDYVHRIGRTGRAGESGNSISFACEEYA  365

Query  625  KVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEF  684
                 +              E       Y+   LL ++   +     Q  P         
Sbjct  366  INLPAIEE----------YIEHSIPQSDYDTSALLEDLPAPIRL---QRRPPQNRRNGSN  412

Query  685  DGKVTYGQKRAAGGGSYKGHVDILAPTVQE  714
            +G+   G ++         H     P   +
Sbjct  413  NGQRQSGNRK---------HSRPRPPRSPQ  433


 Score = 107 bits (268),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 61/360 (17%), Positives = 123/360 (34%), Gaps = 74/360 (21%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+++G+ P++   +    ++  T IQA+++P++L G D+   A+TG+GKT AF       
Sbjct  11   FADLGLEPQVLDGLNAKGFINCTPIQAKALPVLLAGQDIAGQAQTGTGKTLAFLAATFNH  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +  T     EG+K         +   +  +  Y+               +  +    G +
Sbjct  71   LLTTPAP--EGRKITQPRAIIMAPTRELAIQIYN--------------DAESLIASTGLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
            A       ++  +    + G+           + +GT        G     + +   +  
Sbjct  115  AALAYGGERYEKQQKVIEAGV----------DILIGTT-------GRIIDFYKQGQID--  155

Query  184  EEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFE---IPPHMKNQALFPACVLKNAELK  239
              F     +     +D+    F     KD+   F     P    N         +  EL 
Sbjct  156  --FKAIQVVV----LDEADRMFDLGFIKDIRFVFRRMPAPAERLNMLFSATLSYRVQELA  209

Query  240  FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ---HSGNAQVTQTKFLPNAP---KALIVE  293
            F   +E      +           G+++  +    S + ++   + L       +A+I  
Sbjct  210  FEHMQEPEHVVVE------PDQKTGHLITEELFYPSNDHKMALLQTLIEEEWPDRAIIFA  263

Query  294  PSR---ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
             ++   EL             ++   K R  L+ G V  + +  +LE      VDI+V T
Sbjct  264  NTKHKCELVW----------GHLAADKHRVGLLTGDVPQKKRERILEEFTKGEVDILVAT  313


>sp|Q0JM17|RH56_ORYSJ DEAD-box ATP-dependent RNA helicase 56 OS=Oryza 
sativa subsp. japonica OX=39947 GN=AIP1 PE=1 SV=2
Length=432

 Score = 291 bits (744),  Expect = 1e-89, Method: Composition-based stats.
 Identities = 98/382 (26%), Positives = 164/382 (43%), Gaps = 58/382 (15%)

Query  254  GFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI  313
            G   + +A  G   K+     + + Q   +     AL++  +RELA Q  +  ++F KY+
Sbjct  88   GMDVICQAKSGM-GKTAVFVLSSLQQIDPVAGQVGALVLCHTRELAYQICHEFERFSKYL  146

Query  314  DNPKLRELLIIGGVAARDQLSVLEN-GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
              P+++  +  GGV  +    +L+N    IVVGTPGR+  L     L+L  VR  +LDE 
Sbjct  147  --PEVKVAVFYGGVHIKKHKDLLKNDCPHIVVGTPGRILALAREKDLSLKNVRHFILDEC  204

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D +L    S  + R   +I ++T   K  QV++ SATL S +++ + +K M  P  + + 
Sbjct  205  DKMLD---SLDMRRDVQEIFKMTPHDK--QVMMFSATL-SKEIRPVCKKFMQDPMEIYV-  257

Query  433  GEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKIL  492
             +D    T+H +V                                     + + +  +  
Sbjct  258  -DDEAKLTLHGLV-------------------------------------QHYIKLSEAE  279

Query  493  KGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPH  552
            K       +     +Q +IF ++      L +   +           F  + +H      
Sbjct  280  KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLCE---------CNFPAISIHSGMTQE  330

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM  612
            ER    + FK+G  R L+ TD+  RGIDI  V  VIN  +PD   +Y+HR+GR GR    
Sbjct  331  ERLTRYKNFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADSYLHRVGRAGRFGTK  390

Query  613  GLAISLVATEKEKVWYHVCSSR  634
            GLAI+ V++  +    +    R
Sbjct  391  GLAITFVSSASDSDVLNQVQER  412


 Score = 80.9 bits (198),  Expect = 9e-15, Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 38/63 (60%), Gaps = 0/63 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F +  + PE+ +A+++  +  P+++Q E IP  + G DV+  A++G GKT  F +  +
Sbjct  51   SGFRDFLLKPELLRAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSL  110

Query  62   QIV  64
            Q +
Sbjct  111  QQI  113


>sp|Q0CBE1|DHH1_ASPTN ATP-dependent RNA helicase dhh1 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dhh1 
PE=3 SV=1
Length=509

 Score = 293 bits (751),  Expect = 1e-89, Method: Composition-based stats.
 Identities = 111/425 (26%), Positives = 172/425 (40%), Gaps = 68/425 (16%)

Query  213  GLAFEIP--PHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            GL FE           +F A   K + +     +EE       G   L++A +G   K+ 
Sbjct  46   GLEFEDFYIKRELMMGIFEAGFEKPSPI-----QEETIPVALTGRDILARAKNG-TGKTA  99

Query  271  HSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
                  + +        +ALI+ P+RELA QT +  K   K++    +  ++  GG    
Sbjct  100  AFVIPTLERINPKSTKTQALILVPTRELALQTSHVCKTLGKHLG---INVMVTTGGTGLM  156

Query  331  DQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ  390
            D +  L + V I+VGTPGR+ DL S G  +LS+    V+DEAD LLS  ++  I ++ + 
Sbjct  157  DDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSF  216

Query  391  IPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNP  450
             P      K  QV++ SAT     VK   +K M  P  ++L  ++     +      V  
Sbjct  217  HP------KDRQVMLFSATFP-LIVKSFKDKHMRNPYEINLM-DELTLRGITQYYAFVEE  268

Query  451  KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAI  510
            K                                         K         + +++Q+I
Sbjct  269  KQ----------------------------------------KVHCLNTLFSKLQINQSI  288

Query  511  IFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLI  570
            IFC +    + L +   + G         +SC   H       R +    F+ G  R L+
Sbjct  289  IFCNSTNRVELLAKKITELG---------YSCFYSHARMLQQHRNRVFHDFRNGVCRNLV  339

Query  571  CTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
            C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR   +GLAI+L+  +     Y +
Sbjct  340  CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKI  399

Query  631  CSSRG  635
                G
Sbjct  400  EQELG  404


 Score = 97.9 bits (242),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 40/91 (44%), Gaps = 9/91 (10%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +  +  E+   + E  +  P+ IQ E+IP+ L G D+L  A+ G+GKT AF IP ++ 
Sbjct  49   FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER  108

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
            +           K   T         +  + 
Sbjct  109  I---------NPKSTKTQALILVPTRELALQ  130


>sp|P0CQ78|DBP3_CRYNJ ATP-dependent RNA helicase DBP3 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=DBP3 PE=3 SV=1
Length=605

 Score = 296 bits (758),  Expect = 1e-89, Method: Composition-based stats.
 Identities = 109/434 (25%), Positives = 176/434 (41%), Gaps = 71/434 (16%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFL----------PNAPKALIVEPSR  296
                 K   V +++   G  +     G   ++Q   +          P   + L++ P+R
Sbjct  205  PALLSKKDVVGIAETGSGKTLAFGVPGINLLSQLPPVTGSKKGRGQVPGQIQMLVLAPTR  264

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL-ENGVDIVVGTPGRLDDLVS  355
            ELA+Q+  ++  F    +   L+ + I GGV    Q   L +    +VVGTPGR  DL  
Sbjct  265  ELAQQSHEHLSAFG---EQVGLKSVCIFGGVGKDGQARELSQKDTRVVVGTPGRTLDLAD  321

Query  356  TGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDV  415
            +G+L+LS V +LVLDEAD +L  G+ + I R+    P      +  Q ++ SAT     V
Sbjct  322  SGELDLSSVSYLVLDEADRMLDAGFENDIRRIIAHTP---GHKEGRQTVMFSATWP-ESV  377

Query  416  KKLSEKIMHFPTWVDLKGED-SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDN  474
            ++L+   ++ P  + +  ++ S    +  +V  ++   D+ +                  
Sbjct  378  RRLASTFLNNPLRITVGSDELSANKRIEQIVEVLDNPRDKDF------------------  419

Query  475  TRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPD  534
                             LK    V    +    + ++F   K +   LE    + G    
Sbjct  420  ------------RLTHHLKAHLKVHPNSKTSPTRILVFALYKKEAQRLEYTIRRAG----  463

Query  535  KKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD  594
                 ++   LHGD     R + LE FK G    L+ TDVAARG+DI  V  VINVT P 
Sbjct  464  -----YAVGALHGDMTQEARFKALEAFKTGQQNVLVATDVAARGLDIPDVGLVINVTFPL  518

Query  595  EKQNYVHRIGRVGRAERMGLAISLVATEK-------------EKVWYHVCSSRGKGCYNT  641
              +++VHR GR GRA + G A++    E                V   +     +     
Sbjct  519  TTEDFVHRCGRTGRAGKTGKAVTFFTGENHEKSLAGEFMRVLRDVGAEIPKEMDRFPTTI  578

Query  642  RLKEDGGCTIWYNE  655
            + KE G    +Y E
Sbjct  579  KKKEHGSYGAFYKE  592


 Score = 80.9 bits (198),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 29/108 (27%), Positives = 48/108 (44%), Gaps = 8/108 (7%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +  ++ +  ++   + +  +  PT IQA S P +L   DV+  AETGSGKT AF +P 
Sbjct  174  LLSIRDLPINSKLQPFLNK--FEKPTPIQACSWPALLSKKDVVGIAETGSGKTLAFGVPG  231

Query  61   IQIVYETLKDQQEGKKGKTTIKTGAS-----VLNKWQMNPYDRGSAFA  103
            I  +   L      KKG+  +             +     ++  SAF 
Sbjct  232  IN-LLSQLPPVTGSKKGRGQVPGQIQMLVLAPTRELAQQSHEHLSAFG  278


>sp|Q09903|DRS1_SCHPO ATP-dependent RNA helicase drs1 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=drs1 
PE=3 SV=1
Length=754

 Score = 300 bits (768),  Expect = 1e-89, Method: Composition-based stats.
 Identities = 103/485 (21%), Positives = 184/485 (38%), Gaps = 68/485 (14%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
             + + + L+  I   + N        +++  +                 V  +    G  
Sbjct  259  SSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLAL--------LGKDIVGAAVTGSGKT  310

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
                     ++          + LI+ P+RELA Q  +   +   + D   +   L IGG
Sbjct  311  AAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTD---IMVCLCIGG  367

Query  327  VAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            ++ + Q   L    DIV+ TPGR +D + ++    +  +  +V+DEAD +L  G++D +N
Sbjct  368  LSLKLQEQELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELN  427

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
             +    P      K  Q ++ SAT+    V  L    ++ P  V +  + +    +    
Sbjct  428  EIIQACP------KSRQTMLFSATMTD-KVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEF  480

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
            V V P+ +                                     +L+    +   KE  
Sbjct  481  VRVRPQRE-------------------------------------LLRPAMLIYLCKELF  503

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
              + IIF R+K     +   F              +   +HG     +R + LE F+ G 
Sbjct  504  HRRTIIFFRSKAFAHKMRVIFGLL---------SLNATEIHGSLSQEQRVRALEDFRDGK  554

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
              +L+ TDVA+RGIDI G+  VIN   P   + Y+HR+GR  RA R G AI+L      K
Sbjct  555  CNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDRK  614

Query  626  VWYHVCSSRGKGCYNTR-LKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEF  684
            V   V   +     NT+ +  +          + + E+E  +   + + + + ++ + E 
Sbjct  615  VLKGVF--KNSSAQNTKLVNRNLDFNKVEKFGKEIEELEPVVQKVLDEEKQERELKIAER  672

Query  685  DGKVT  689
            D K  
Sbjct  673  DLKKG  677


 Score = 109 bits (273),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 6/110 (5%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            ++F  M +   I + +  + + +PT IQ ++IPL L G D++ AA TGSGKT AF +P++
Sbjct  259  SSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPIL  318

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
            + +    K      K  TT         +  M  +   +  A  +D + C
Sbjct  319  ERLLYRPK------KVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVC  362


>sp|A7ENE0|PRP5_SCLS1 Pre-mRNA-processing ATP-dependent RNA helicase 
prp5 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 
1980 / Ss-1) OX=665079 GN=prp5 PE=3 SV=1
Length=1114

 Score = 307 bits (787),  Expect = 1e-89, Method: Composition-based stats.
 Identities = 108/482 (22%), Positives = 191/482 (40%), Gaps = 89/482 (18%)

Query  213  GLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHS  272
            GL  +    +K         ++   +                 + ++K   G  +     
Sbjct  489  GLDVKSLDVIKKLGYDKPTSIQMQAIPAIMS--------GRDVIGVAKTGSGKTIAFLLP  540

Query  273  GNAQVTQTKFLPN--APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
                +   + L N   P  LI+ P+RELA Q     K F K +    LR +   GG   +
Sbjct  541  MFRHIRDQRPLKNSDGPIGLIMTPTRELATQIHKECKPFLKAMG---LRAVCAYGGAIIK  597

Query  331  DQLSVLENGVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRM  387
            DQ++ L+ G +I+V TPGR+ +L++       NL +V ++VLDEAD +   G+   + ++
Sbjct  598  DQIADLKRGAEIIVCTPGRMIELLAANSGRVTNLQRVTYVVLDEADRMFDMGFEPQVMKV  657

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVV-  446
             N I          Q I+ SAT+    +  L++K +  P  + + G   V   +  +V  
Sbjct  658  FNNI------RPNRQTILFSATMPRI-MDALAKKTLQSPVEIVVGGRSVVAPEITQIVEV  710

Query  447  -PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
                 K  RL E LG+ +   +D                                     
Sbjct  711  REEKEKFHRLLELLGELYNADEDA------------------------------------  734

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
              + +IF   +   D+L +  +++G         + C+ +HG +   +R   ++ FK G 
Sbjct  735  --RTLIFVDRQEKADDLLKDLMRKG---------YPCMSIHGGKDQVDRDSTIDDFKAGV  783

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            V  +I T VAARG+D+  +  V+N   P+  ++YVHR GR GRA   G A++ +  E+E+
Sbjct  784  VPIMIATSVAARGLDVKQLKLVVNFDAPNHLEDYVHRAGRTGRAGNTGTAVTFITEEQEQ  843

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFD  685
                +  +  +                    + L+E+ +       +V+   K     F 
Sbjct  844  YSVGIAKALEQSGQEV--------------PERLNEMRKSYK---DKVKSGAKKESSGFG  886

Query  686  GK  687
            GK
Sbjct  887  GK  888


 Score = 108 bits (270),  Expect = 6e-23, Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 51/107 (48%), Gaps = 4/107 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  +S+ G+  +    ++++ +  PT IQ ++IP I+ G DV+  A+TGSGKT AF +P+
Sbjct  482  VQKWSQCGLDVKSLDVIKKLGYDKPTSIQMQAIPAIMSGRDVIGVAKTGSGKTIAFLLPM  541

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
             + +    +DQ+  K     I    +   +     +     F     
Sbjct  542  FRHI----RDQRPLKNSDGPIGLIMTPTRELATQIHKECKPFLKAMG  584


>sp|Q95YF3|CGH1_CAEEL ATP-dependent RNA helicase cgh-1 OS=Caenorhabditis 
elegans OX=6239 GN=cgh-1 PE=1 SV=1
Length=430

 Score = 290 bits (743),  Expect = 1e-89, Method: Composition-based stats.
 Identities = 105/411 (26%), Positives = 176/411 (43%), Gaps = 63/411 (15%)

Query  254  GFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI  313
            G   L++A +G   K+       + + +    A +A+++ P+RELA QT     +  K+I
Sbjct  80   GQDILARAKNG-TGKTGAYCIPVIEKIQPALKAIQAMVIVPTRELALQTSQICVELSKHI  138

Query  314  DNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEAD  373
               +L+ ++  GG   RD +  L   V +V+ TPGR+ DL+  G   +   + LVLDEAD
Sbjct  139  ---QLKVMVTTGGTDLRDDIMRLNGTVHLVIATPGRILDLMEKGVAKMEHCKTLVLDEAD  195

Query  374  GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG  433
             LLSQ +   ++R+ N +P      K  QV++ SAT  +  V    +K MH P  ++L  
Sbjct  196  KLLSQDFQGILDRLINFLP------KERQVMLYSATFPNT-VTSFMQKHMHKPYEINLM-  247

Query  434  EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK  493
            E+     V      V  K                                         K
Sbjct  248  EELTLLGVTQYYAFVQEKQ----------------------------------------K  267

Query  494  GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
                    ++ +++Q+IIFC +    + L +   + G         +SC  +H     + 
Sbjct  268  VHCLNTLFRKLQINQSIIFCNSTQRVELLAKKITEIG---------YSCYYIHSKMAQNH  318

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
            R +    F++G+ R L+C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR   +G
Sbjct  319  RNRVFHDFRQGNCRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLG  378

Query  614  LAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEE  664
            +AI+L+  E       +            + +     ++  + QL+   +E
Sbjct  379  VAINLITYEDRHTLRRIEQELRTRIEP--IPKTVDPKLYVADQQLVDAADE  427


 Score = 90.6 bits (223),  Expect = 7e-18, Method: Composition-based stats.
 Identities = 26/91 (29%), Positives = 41/91 (45%), Gaps = 9/91 (10%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +  +  ++   + E  W  P+ IQ  SI + L G D+L  A+ G+GKTGA+ IPVI+ 
Sbjct  45   FEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEK  104

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
            +   LK  Q                 +  + 
Sbjct  105  IQPALKAIQ---------AMVIVPTRELALQ  126


>sp|Q5JK84|RH15_ORYSJ DEAD-box ATP-dependent RNA helicase 15 OS=Oryza 
sativa subsp. japonica OX=39947 GN=AIP2 PE=1 SV=1
Length=432

 Score = 290 bits (743),  Expect = 1e-89, Method: Composition-based stats.
 Identities = 98/382 (26%), Positives = 164/382 (43%), Gaps = 58/382 (15%)

Query  254  GFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI  313
            G   + +A  G   K+     + + Q   +     AL++  +RELA Q  +  ++F KY+
Sbjct  88   GMDVICQAKSGM-GKTAVFVLSSLQQIDPVAGQVGALVLCHTRELAYQICHEFERFSKYL  146

Query  314  DNPKLRELLIIGGVAARDQLSVLEN-GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
              P+++  +  GGV  +    +L+N    IVVGTPGR+  L     L+L  VR  +LDE 
Sbjct  147  --PEVKVAVFYGGVHIKKHKDLLKNDCPHIVVGTPGRILALAREKDLSLKNVRHFILDEC  204

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D +L    S  + R   +I ++T   K  QV++ SATL S +++ + +K M  P  + + 
Sbjct  205  DKMLD---SLDMRRDVQEIFKMTPHDK--QVMMFSATL-SKEIRPVCKKFMQDPMEIYV-  257

Query  433  GEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKIL  492
             +D    T+H +V                                     + + +  +  
Sbjct  258  -DDEAKLTLHGLV-------------------------------------QHYIKLSEAE  279

Query  493  KGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPH  552
            K       +     +Q +IF ++      L +   +           F  + +H      
Sbjct  280  KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLCE---------CNFPAISIHSGMTQE  330

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM  612
            ER    + FK+G  R L+ TD+  RGIDI  V  VIN  +PD   +Y+HR+GR GR    
Sbjct  331  ERLTRYKNFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADSYLHRVGRAGRFGTK  390

Query  613  GLAISLVATEKEKVWYHVCSSR  634
            GLAI+ V++  +    +    R
Sbjct  391  GLAITFVSSASDSDVLNQVQER  412


 Score = 80.9 bits (198),  Expect = 9e-15, Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 38/63 (60%), Gaps = 0/63 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F +  + PE+ +A+++  +  P+++Q E IP  + G DV+  A++G GKT  F +  +
Sbjct  51   SGFRDFLLKPELLRAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSL  110

Query  62   QIV  64
            Q +
Sbjct  111  QQI  113


>sp|A2QRY2|DBP10_ASPNC ATP-dependent RNA helicase dbp10 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=dbp10 PE=3 SV=1
Length=932

 Score = 304 bits (778),  Expect = 1e-89, Method: Composition-based stats.
 Identities = 125/535 (23%), Positives = 200/535 (37%), Gaps = 45/535 (8%)

Query  224  NQALFPACVLKNAELKFNFGEEEFKFPPKDG-FVALSKAPDGYIVKSQHSGNAQVTQTKF  282
            N  L  A   K   +      +      +D   V +++   G           ++ ++  
Sbjct  98   NANLLKAITRKGFSVPTPIQRKTIPVIMEDQDVVGMARTGSGKTAAFVIPMIQKL-KSHS  156

Query  283  LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDI  342
                 + LI+ PSRELA QTL  +K+  K      L+ +L++GG +  +Q S++    DI
Sbjct  157  TQVGARGLILSPSRELALQTLKVVKELGK---GTDLKAVLLVGGDSLEEQFSMMAGNPDI  213

Query  343  VVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            V+ TPGR   L     L+LS +R++V DEAD L   G++  +  + + +P         Q
Sbjct  214  VIATPGRFLHLKVEMNLDLSSIRYVVFDEADRLFEMGFAAQLTEILHGLPST------RQ  267

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNP--KTDRLWERLG  460
             ++ SATL    V+  +   +  PT V L  E  +   + +    V    K   L   L 
Sbjct  268  TLLFSATLPKSLVE-FARAGLQEPTLVRLDTESKISPDLQNAFFSVKSGDKEGALMYILH  326

Query  461  K--SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
                        A+      A+         +    + A+   +       IIF  TK  
Sbjct  327  NVIKMPTGPTEAAQRMKEENASGKSSKFSKKRKRSDDKAINFKESPTKHSTIIFAATKHH  386

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
             D L     + G         F+    +G      RK  +  F+ G    L+ TDVAARG
Sbjct  387  VDYLYSLLNEAG---------FATSYAYGSLDQTARKIQVHNFRTGISNILVVTDVAARG  437

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGC  638
            IDI  +  VIN   P + + +VHR+GR  RA R G + SLV          +    G+  
Sbjct  438  IDIPILANVINYDFPSQAKIFVHRVGRTARAGRTGWSYSLVRDSDAPYLLDLQLFLGRRL  497

Query  639  YNTRLKEDGGCTIWYNEM-------QLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYG  691
               R  E G    +  ++         LS+  E +N  +               G+  Y 
Sbjct  498  VLGR--EHGDQVNFAEDVVVGGFPRDGLSQSCEWVNKVLDDTVDIAAQRSVASKGEKLYL  555

Query  692  QKRAAGGGSYKGHVDILAPT----------VQELAALEKEAQTSFLHL-GYLPNQ  735
            + R A           +  +            E + LE E +     + GY PN+
Sbjct  556  RTRNAASLESAKRSKEVVSSDNWTALHPLFNDETSQLEAEREKMLARIGGYRPNE  610


 Score = 102 bits (255),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 32/104 (31%), Positives = 49/104 (47%), Gaps = 7/104 (7%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F  MG+   + +A+    + +PT IQ ++IP+I+   DV+  A TGSGKT AF IP+IQ 
Sbjct  92   FQAMGLNANLLKAITRKGFSVPTPIQRKTIPVIMEDQDVVGMARTGSGKTAAFVIPMIQK  151

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            +       Q G +G        S   +  +           G+D
Sbjct  152  LKSH--STQVGARG-----LILSPSRELALQTLKVVKELGKGTD  188


>sp|P87206|IF4A_CANAL ATP-dependent RNA helicase eIF4A OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=TIF1 
PE=3 SV=1
Length=397

 Score = 289 bits (740),  Expect = 1e-89, Method: Composition-based stats.
 Identities = 110/426 (26%), Positives = 182/426 (43%), Gaps = 71/426 (17%)

Query  228  FPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN------AQVTQ  279
            F    LK   ++  F +G E      +   + +++  D        +G       + + +
Sbjct  25   FDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQR  84

Query  280  TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
                  A +ALI+ P+RELA Q  N I     Y+   K+     IGG +  D +    +G
Sbjct  85   INENEKATQALILAPTRELALQIKNVITAIGLYL---KVTVHASIGGTSMSDDIEAFRSG  141

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
            V IVVGTPGR+ D++        +V+  +LDEAD +LS G+ + I  +   +P+ T    
Sbjct  142  VQIVVGTPGRVLDMIERRYFKTDKVKMFILDEADEMLSSGFKEQIYNIFRLLPETT----  197

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              Q+++ SAT+   DV +++ K M+ P  + +K ++   + +    + V           
Sbjct  198  --QIVLLSATMP-QDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVE----------  244

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
                                         ++  K +          + QA+IFC T+   
Sbjct  245  -----------------------------LEDYKFDCLCDLYDSISVTQAVIFCNTRSKV  275

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            + L     +Q          F+   +H D    ER   ++ F+ G  R LI TD+ ARGI
Sbjct  276  EFLTNKLREQ---------HFTVSAIHADLPQAERDTIMKEFRSGSSRILISTDLLARGI  326

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCY  639
            D+  V  VIN  LP  K+NY+HRIGR GR  R G+AI+ V      +   +        Y
Sbjct  327  DVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDRDVGMMREIEK-----FY  381

Query  640  NTRLKE  645
            +T+++E
Sbjct  382  STQIEE  387


 Score = 93.3 bits (230),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 24/101 (24%), Positives = 44/101 (44%), Gaps = 9/101 (9%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F ++ + P I + +    +  P+ IQ  +I  I  G DVL  A++G+GKT  F+I  +Q 
Sbjct  25   FDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQR  84

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            + E  K  Q             +   +  +   +  +A  +
Sbjct  85   INENEKATQ---------ALILAPTRELALQIKNVITAIGL  116


>sp|A1D8G1|DHH1_NEOFI ATP-dependent RNA helicase dhh1 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dhh1 
PE=3 SV=1
Length=507

 Score = 293 bits (749),  Expect = 2e-89, Method: Composition-based stats.
 Identities = 111/425 (26%), Positives = 171/425 (40%), Gaps = 68/425 (16%)

Query  213  GLAFEIP--PHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            GL FE           +F A   K + +     +EE       G   L++A +G   K+ 
Sbjct  46   GLEFEDFYIKRELMMGIFEAGFEKPSPI-----QEETIPVALTGRDILARAKNG-TGKTA  99

Query  271  HSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
                  + +        +ALI+ P+RELA QT    K   K++    +  ++  GG    
Sbjct  100  AFVIPTLERINPKSTKTQALILVPTRELALQTSQVCKTLGKHLG---INVMVTTGGTGLM  156

Query  331  DQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ  390
            D +  L + V I+VGTPGR+ DL S G  +LS+    V+DEAD LLS  ++  I ++ + 
Sbjct  157  DDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSF  216

Query  391  IPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNP  450
             P      K  QV++ SAT     VK   +K M  P  ++L  ++     +      V  
Sbjct  217  HP------KDRQVMLFSATFP-LIVKSFKDKHMRNPYEINLM-DELTLRGITQYYAFVEE  268

Query  451  KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAI  510
            K                                         K         + +++Q+I
Sbjct  269  KQ----------------------------------------KVHCLNTLFSKLQINQSI  288

Query  511  IFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLI  570
            IFC +    + L +   + G         +SC   H       R +    F+ G  R L+
Sbjct  289  IFCNSTNRVELLAKKITELG---------YSCFYSHARMLQQHRNRVFHDFRNGVCRNLV  339

Query  571  CTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
            C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR   +GLAI+L+  +     Y +
Sbjct  340  CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKI  399

Query  631  CSSRG  635
                G
Sbjct  400  EQELG  404


 Score = 97.9 bits (242),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 40/91 (44%), Gaps = 9/91 (10%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +  +  E+   + E  +  P+ IQ E+IP+ L G D+L  A+ G+GKT AF IP ++ 
Sbjct  49   FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER  108

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
            +           K   T         +  + 
Sbjct  109  I---------NPKSTKTQALILVPTRELALQ  130


>sp|A1CX72|PRP28_NEOFI Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 
3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) 
OX=331117 GN=prp28 PE=3 SV=1
Length=796

 Score = 301 bits (770),  Expect = 2e-89, Method: Composition-based stats.
 Identities = 99/457 (22%), Positives = 182/457 (40%), Gaps = 80/457 (18%)

Query  210  KDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKS  269
            ++ GL   +   +          ++ A +                 + ++    G     
Sbjct  367  EESGLPKRLLELVDQVGYKEPTPIQRAAIPIAL--------QSRDLIGVAVTGSGKTASF  418

Query  270  QHSGNAQVTQTKFLP-------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
                   +++   +        + P A+++ P+RELA+Q     ++F + +       + 
Sbjct  419  LLPLLVYISELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEARKFTQPLG---FNVVS  475

Query  323  IIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD  382
            I+GG +  +Q   L NG +I++ TPGRL D +    L LSQ  ++++DEAD ++  G+ +
Sbjct  476  IVGGHSFEEQAYSLRNGAEIIIATPGRLVDCIERRLLVLSQCCYVIMDEADRMIDLGFEE  535

Query  383  FINRMHNQIP--------------QVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTW  428
             +N++ + +P                    +  Q ++ +AT+ S  V++++ K +  P  
Sbjct  536  PVNKILDALPVTNEKPDTEEAENSAAMRSHRYRQTMMYTATMPSA-VERIARKYLRRPAI  594

Query  429  VDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEA  488
            V +       DTV   V  +  +  R          R  D+ +    RP           
Sbjct  595  VTIGSAGEAVDTVEQRVEMIAGEDKR--------KKRLADILSSGEFRPP----------  636

Query  489  IKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGD  548
                                 I+F   K +CD + +   Q G         FS V LHG 
Sbjct  637  --------------------IIVFVNIKRNCDAIAREIKQMG---------FSSVTLHGS  667

Query  549  RKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
            +   +R+  L   + G    L+ TD+A RGID+  V  V+N  + +  ++Y HRIGR GR
Sbjct  668  KTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMANSIESYTHRIGRTGR  727

Query  609  AERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            A + G+AI+ +  E   V Y +     K   +   +E
Sbjct  728  AGKSGVAITFLGNEDADVMYDLKQMLMKSPISRVPEE  764


 Score = 108 bits (270),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 1/104 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M ++ E G+   + + V+++ +  PT IQ  +IP+ L   D++  A TGSGKT +F +P+
Sbjct  363  MRSWEESGLPKRLLELVDQVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPL  422

Query  61   IQIVYETLK-DQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
            +  + E  + D+ E +K         +   +           F 
Sbjct  423  LVYISELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEARKFT  466


>sp|A5UI36|RHLB_HAEIG ATP-dependent RNA helicase RhlB OS=Haemophilus 
influenzae (strain PittGG) OX=374931 GN=rhlB PE=3 SV=1
Length=415

 Score = 289 bits (740),  Expect = 2e-89, Method: Composition-based stats.
 Identities = 102/399 (26%), Positives = 168/399 (42%), Gaps = 62/399 (16%)

Query  257  ALSKAPDGYIVKSQHSGNAQVTQTKFLPN----APKALIVEPSRELAEQTLNNIKQFKKY  312
              ++   G  +    +       T   PN     P+ALI+ P+RELA Q  N+ +   K 
Sbjct  51   GQAQTGTGKTMAFL-TATFHHLLTHQDPNLEYPHPRALILAPTRELAVQISNDAEFLAK-  108

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
                 L+  L  GG     QL V+E GVDI++GT GR+ D V  G + L +++ +VLDEA
Sbjct  109  --ASGLKTALAYGGDGYDKQLQVIECGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEA  166

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D +   G+   I  +  + P      +    ++ SATL S+ V++L+ + M+ P +++++
Sbjct  167  DRMFDLGFIRDIRYLLRKCPA----PQARLTMLFSATL-SYKVRELAFEDMNDPEYIEIE  221

Query  433  GEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKIL  492
             E      +                                         E         
Sbjct  222  PEQKTGHRIK----------------------------------------EELFYPSNQD  241

Query  493  KGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPH  552
            K    +  +++   ++ I+F  TK  C+ +  Y    G              L GD    
Sbjct  242  KMALLLTLMEDEWPERCIVFANTKHRCEEIWGYLAADG---------HRVGLLTGDVAQK  292

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM  612
            +R   L++F  GD+  L+ TDVAARG+ I  V +V N  LPD++++YVHRIGR GRA   
Sbjct  293  KRLSLLKQFTDGDLDILVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGES  352

Query  613  GLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTI  651
            G++IS    E       +    G     ++ + +    +
Sbjct  353  GVSISFACEEYAMNLPAIEEYIGHSIPVSQYETEALLEL  391


 Score = 92.9 bits (229),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 53/352 (15%), Positives = 110/352 (31%), Gaps = 59/352 (17%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS + + P +  A+ +  +   T IQA S+P+ L G DV   A+TG+GKT AF       
Sbjct  11   FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +      Q    +         +   +  +   +               +  + +  G +
Sbjct  71   LLTH---QDPNLEYPHPRALILAPTRELAVQISN--------------DAEFLAKASGLK  113

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  114  TALAYGGDGYDKQLQVIECGV----------DILIGTT---------------GRVIDYV  148

Query  184  EEFTMH-DTIGCYLDIDKGHVKFSKNG----KDLGLAFEIPPHMKNQALFPACVLKNAEL  238
            ++  +  D I   + +D+    F        + L      P              K  EL
Sbjct  149  KQGVIGLDEIQVVV-LDEADRMFDLGFIRDIRYLLRKCPAPQARLTMLFSATLSYKVREL  207

Query  239  KFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSREL  298
             F    +      +       +  +     S     A +          + ++   ++  
Sbjct  208  AFEDMNDPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTLMEDEWPERCIVFANTK--  265

Query  299  AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                 +  ++   Y+     R  L+ G VA + +LS+L+      +DI+V T
Sbjct  266  -----HRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILVAT  312


>sp|Q6FQU5|DHH1_CANGA ATP-dependent RNA helicase DHH1 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DHH1 PE=3 SV=1
Length=507

 Score = 292 bits (748),  Expect = 2e-89, Method: Composition-based stats.
 Identities = 105/427 (25%), Positives = 170/427 (40%), Gaps = 71/427 (17%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             +D  L  E+   +          ++   +               G   L++A +G   K
Sbjct  33   FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAIT----------GRDILARAKNG-TGK  81

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
            +       + + K   N  +ALI+ P+RELA QT   I+   ++     +  ++  GG  
Sbjct  82   TAAFVIPTLEKIKPKLNKIQALIMVPTRELALQTSQVIRTLGRHCG---VSCMVTTGGTN  138

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
             RD +  L   V ++VGTPGR+ DL S    +LS+    V+DEAD +LS+ +   I ++ 
Sbjct  139  LRDDILRLNETVHVLVGTPGRVLDLASRKVADLSECSLFVMDEADKMLSRDFKTIIEQVL  198

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
              +P+        Q ++ SAT     VK+   K +H P  ++L  E+     +      V
Sbjct  199  TFLPKAH------QSLLFSATFP-LTVKEFMVKHLHKPYEINLM-EELTLKGITQYYAFV  250

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
              +                                         K         + +++Q
Sbjct  251  EERQ----------------------------------------KLHCLNTLFSKLQINQ  270

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
            AIIFC +    + L +     G         +SC   H   K  +R +    F++G VR 
Sbjct  271  AIIFCNSTNRVELLAKKITDLG---------YSCYYSHARMKQQDRNKVFHDFRQGKVRT  321

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            L+C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR   +GLAI+L+        Y
Sbjct  322  LVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLY  381

Query  629  HVCSSRG  635
             +    G
Sbjct  382  KIEQELG  388


 Score = 100 bits (249),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 41/92 (45%), Gaps = 9/92 (10%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F +  +  E+   + E  +  P+ IQ E+IP+ + G D+L  A+ G+GKT AF IP ++
Sbjct  32   SFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLE  91

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
             +   L   Q                 +  + 
Sbjct  92   KIKPKLNKIQ---------ALIMVPTRELALQ  114


>sp|Q4WWD3|DHH1_ASPFU ATP-dependent RNA helicase dhh1 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=dhh1 PE=3 SV=1
Length=507

 Score = 292 bits (748),  Expect = 2e-89, Method: Composition-based stats.
 Identities = 111/425 (26%), Positives = 171/425 (40%), Gaps = 68/425 (16%)

Query  213  GLAFEIP--PHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            GL FE           +F A   K + +     +EE       G   L++A +G   K+ 
Sbjct  46   GLEFEDFYIKRELMMGIFEAGFEKPSPI-----QEETIPVALTGRDILARAKNG-TGKTA  99

Query  271  HSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
                  + +        +ALI+ P+RELA QT    K   K++    +  ++  GG    
Sbjct  100  AFVIPTLERINPKSTKTQALILVPTRELALQTSQVCKTLGKHLG---INVMVTTGGTGLM  156

Query  331  DQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ  390
            D +  L + V I+VGTPGR+ DL S G  +LS+    V+DEAD LLS  ++  I ++ + 
Sbjct  157  DDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSF  216

Query  391  IPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNP  450
             P      K  QV++ SAT     VK   +K M  P  ++L  ++     +      V  
Sbjct  217  HP------KDRQVMLFSATFP-LIVKSFKDKHMRNPYEINLM-DELTLRGITQYYAFVEE  268

Query  451  KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAI  510
            K                                         K         + +++Q+I
Sbjct  269  KQ----------------------------------------KVHCLNTLFSKLQINQSI  288

Query  511  IFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLI  570
            IFC +    + L +   + G         +SC   H       R +    F+ G  R L+
Sbjct  289  IFCNSTNRVELLAKKITELG---------YSCFYSHARMLQQHRNRVFHDFRNGVCRNLV  339

Query  571  CTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
            C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR   +GLAI+L+  +     Y +
Sbjct  340  CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKI  399

Query  631  CSSRG  635
                G
Sbjct  400  EQELG  404


 Score = 97.5 bits (241),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 40/91 (44%), Gaps = 9/91 (10%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +  +  E+   + E  +  P+ IQ E+IP+ L G D+L  A+ G+GKT AF IP ++ 
Sbjct  49   FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER  108

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
            +           K   T         +  + 
Sbjct  109  I---------NPKSTKTQALILVPTRELALQ  130


>sp|Q54E49|DDX6_DICDI Probable ATP-dependent RNA helicase ddx6 
OS=Dictyostelium discoideum OX=44689 GN=ddx6 PE=3 SV=1
Length=423

 Score = 290 bits (741),  Expect = 2e-89, Method: Composition-based stats.
 Identities = 102/425 (24%), Positives = 170/425 (40%), Gaps = 71/425 (17%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            DL L  ++   +  +       ++   +               G   +++A +G   K+ 
Sbjct  53   DLHLKRDLLRGIFEKGYVKPSPIQEKAIPIAL----------AGRDIMARAKNG-TGKTA  101

Query  271  HSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
                  + +T    +  + LI+ P+RELA QT    K+  KY++   ++ +   GG + +
Sbjct  102  SFLIPALEKTDPTKDVIQVLILVPTRELALQTSQVCKELGKYMN---VQVMASTGGTSLK  158

Query  331  DQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ  390
            D +  L N V I+V TPGR+ DL      NLS    +++DEAD LLSQ +   + ++ N 
Sbjct  159  DDIMRLYNPVHILVATPGRVLDLAQKNVANLSNCHTMIMDEADKLLSQEFQPLVEQLINF  218

Query  391  IPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNP  450
            +PQ      + Q+++ SAT     VK   E  +     ++L  E+     V      V  
Sbjct  219  LPQ------QRQILLFSATFP-VTVKSFKEHYLQQAFEINLM-EELTLKGVTQYYAFVEE  270

Query  451  KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAI  510
            +                                         K         + +++Q+I
Sbjct  271  RQ----------------------------------------KIHCLNTLFSKLQINQSI  290

Query  511  IFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLI  570
            IFC +    + L +   + G         +SC  +H       R +    F+ G  R L+
Sbjct  291  IFCNSVNRVELLAKKITELG---------YSCFFIHAKMVQAHRNRVFHDFRNGACRNLV  341

Query  571  CTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
             +D+  RGIDI  V  VIN   P   + Y+HRIGR GR   +GLAI+L+  E     Y +
Sbjct  342  SSDLFTRGIDIQDVNVVINFDFPKHSETYLHRIGRSGRFGHLGLAINLITYEDRFSLYKI  401

Query  631  CSSRG  635
                G
Sbjct  402  EQELG  406


 Score = 95.6 bits (236),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 28/129 (22%), Positives = 53/129 (41%), Gaps = 6/129 (5%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F ++ +  ++ + + E  ++ P+ IQ ++IP+ L G D++  A+ G+GKT +F IP ++ 
Sbjct  51   FDDLHLKRDLLRGIFEKGYVKPSPIQEKAIPIALAGRDIMARAKNGTGKTASFLIPALEK  110

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKW--QMNPYDRGSAFAIGSDGLCCQS--REVKEW  119
               T    Q         +  A   ++   ++  Y      A            R     
Sbjct  111  TDPTKDVIQVLI--LVPTRELALQTSQVCKELGKYMNVQVMASTGGTSLKDDIMRLYNPV  168

Query  120  HGCRATKGL  128
            H   AT G 
Sbjct  169  HILVATPGR  177


>sp|Q8NJM2|DBP10_ASPFU ATP-dependent RNA helicase dbp10 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC 
A1100 / Af293) OX=330879 GN=dbp10 PE=3 SV=1
Length=869

 Score = 302 bits (773),  Expect = 2e-89, Method: Composition-based stats.
 Identities = 116/531 (22%), Positives = 200/531 (38%), Gaps = 51/531 (10%)

Query  209  GKDLGLAFEIPPHMKNQAL-----FPACVLKNAELKFNFGEEEFKFPPKDGF--------  255
             +    A     ++K + +     F A  L    LK     + F  P             
Sbjct  48   AEQQTSANRKASNLKGRTVKKGGGFQAMGLSANLLK-AIARKGFSVPTPIQRKTIPVIMD  106

Query  256  ----VALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKK  311
                V +++   G           ++        A + L++ PSRELA QTL  +K+  +
Sbjct  107  DQDVVGMARTGSGKTAAFVIPMIEKLKSHSTKVGA-RGLVLSPSRELALQTLKVVKELGR  165

Query  312  YIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDE  371
                  L+ +L++GG +  +Q +++    DI++ TPGR   L     L+LS +R++V DE
Sbjct  166  ---GTDLKSVLLVGGDSLEEQFAMIAGNPDIIIATPGRFLHLKVEMNLDLSSIRYVVFDE  222

Query  372  ADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL  431
            AD L   G++  +  + + +P         Q ++ SATL    V+  +   +  PT V L
Sbjct  223  ADRLFEMGFAAQLTEILHGLPA------NRQTLLFSATLPKSLVE-FARAGLQEPTLVRL  275

Query  432  KGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT----DDVHAKDNTRPGANSPEMWSE  487
              E  +   + +    V               +          ++      A++  + ++
Sbjct  276  DTESKISPDLQNAFFSVKSSEKEGALLYILHEVIKMPTGPTEVSQQRKEEDASAKNLKNK  335

Query  488  AIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHG  547
              K  + E AV   +       I+F  TK   D L     + G         F+   ++G
Sbjct  336  KRKRAEMEKAVNTRESPTKHSTIVFAATKHHVDYLYSLLCEAG---------FAVSYVYG  386

Query  548  DRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVG  607
                  RK  ++ F+ G    L+ TDVAARGIDI  +  VIN   P + + +VHR+GR  
Sbjct  387  SLDQTARKIQVQNFRTGMTNILVVTDVAARGIDIPILANVINYDFPSQPKIFVHRVGRTA  446

Query  608  RAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLN  667
            RA R G + SLV          +    G+     R  E G    +  ++   S   + L+
Sbjct  447  RAGRKGWSYSLVRDADAPYLLDLQLFLGRRLVVGR--EFGDQVNFAEDVVTGSLPRDGLS  504

Query  668  CTISQVEPDIKVPVD-------EFDGKVTYGQKRAAGGGSYKGHVDILAPT  711
             +   V   +    D          G+  Y + R A           +  +
Sbjct  505  QSCEWVTKVLDDNADLAAQRTVAAKGEKLYMRTRNAASLESAKRSKQVVSS  555


 Score = 100 bits (248),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 30/104 (29%), Positives = 49/104 (47%), Gaps = 7/104 (7%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F  MG+   + +A+    + +PT IQ ++IP+I+   DV+  A TGSGKT AF IP+I+ 
Sbjct  72   FQAMGLSANLLKAIARKGFSVPTPIQRKTIPVIMDDQDVVGMARTGSGKTAAFVIPMIEK  131

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            +       + G +G        S   +  +           G+D
Sbjct  132  LKSH--STKVGARG-----LVLSPSRELALQTLKVVKELGRGTD  168


>sp|C4K8M8|RHLB_HAMD5 ATP-dependent RNA helicase RhlB OS=Hamiltonella 
defensa subsp. Acyrthosiphon pisum (strain 5AT) OX=572265 
GN=rhlB PE=3 SV=1
Length=422

 Score = 290 bits (741),  Expect = 2e-89, Method: Composition-based stats.
 Identities = 113/467 (24%), Positives = 192/467 (41%), Gaps = 72/467 (15%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L   +   ++NQ  +    ++                      A ++   G  +   
Sbjct  13   DFALHPLVIKAIENQGFYHCTPIQALSFPITLA--------GRDVAAQAQTGTGKTLAFL  64

Query  271  HSG-NAQVTQTKFLPNA---PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             S  N  +T           P+ALI+ P+RELA Q   + +   ++     L+  L  GG
Sbjct  65   ASVFNYLLTNAADETRQCEQPRALIMVPTRELAIQIYTDAETLSQFTS---LKMGLAYGG  121

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                 QL +LE+GVDI++GTPGR+ D      ++L+ ++ +VLDEAD +   G+   I  
Sbjct  122  DGYDKQLKILESGVDILIGTPGRIIDYAKQNFIHLNALQVIVLDEADRMYDLGFIKDIRW  181

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVV  445
            +  ++P      ++   ++ SATL S+ V++LS + M+ P +++++    +   +   + 
Sbjct  182  LFRRMP----PAEKRLNMLFSATL-SYRVRELSFEQMNHPEYIEVEPLQKIGSQIQEELF  236

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
             P N    RL + L                                         I+E  
Sbjct  237  YPSNEDKMRLLQTL-----------------------------------------IEEEW  255

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+ IIF  TK  C+++  + +  G              L GD    +R Q L+ F KG 
Sbjct  256  PDRCIIFANTKQRCEDIWGHLVADG---------HRVGLLTGDVAQRKRIQILDDFSKGY  306

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +  L+ TDVAARG+ I  V +V N  LP+  ++Y+HRIGR GRA   G +ISL       
Sbjct  307  LDILVATDVAARGLHIPKVTHVFNYDLPENVEDYIHRIGRTGRAGEKGYSISLACEAFAS  366

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQ  672
                + +  G     +   ++   T    + + L     H   + +Q
Sbjct  367  HLSTIEACTGHRIPTSEYNKEALLTDLP-QPKRLQRHHRHYAGSRNQ  412


 Score = 102 bits (254),  Expect = 8e-22, Method: Composition-based stats.
 Identities = 56/351 (16%), Positives = 122/351 (35%), Gaps = 56/351 (16%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  + P + +A+E   +   T IQA S P+ L G DV   A+TG+GKT AF   V   
Sbjct  11   FSDFALHPLVIKAIENQGFYHCTPIQALSFPITLAGRDVAAQAQTGTGKTLAFLASVFNY  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +     D  E ++ +           +  +  Y                +  + ++   +
Sbjct  71   LLTNAAD--ETRQCEQPRALIMVPTRELAIQIYT--------------DAETLSQFTSLK  114

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   + G+           + +GT                 +  +Y 
Sbjct  115  MGLAYGGDGYDKQLKILESGV----------DILIGT---------------PGRIIDYA  149

Query  184  EEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAF-EIPPHMKNQALFPACVLKNAELKFN  241
            ++  +H      + +D+    +     KD+   F  +PP  K   +  +  L     + +
Sbjct  150  KQNFIHLNALQVIVLDEADRMYDLGFIKDIRWLFRRMPPAEKRLNMLFSATLSYRVRELS  209

Query  242  FGEEE-FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-KALIVEPSRELA  299
            F +    ++   +    +       +    +    ++ QT      P + +I   ++   
Sbjct  210  FEQMNHPEYIEVEPLQKIGSQIQEELFYPSNEDKMRLLQTLIEEEWPDRCIIFANTK---  266

Query  300  EQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                   +    ++     R  L+ G VA R ++ +L++     +DI+V T
Sbjct  267  ----QRCEDIWGHLVADGHRVGLLTGDVAQRKRIQILDDFSKGYLDILVAT  313


>sp|Q4WPE9|PRP28_ASPFU Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / 
CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=prp28 PE=3 SV=1
Length=796

 Score = 300 bits (768),  Expect = 3e-89, Method: Composition-based stats.
 Identities = 99/457 (22%), Positives = 182/457 (40%), Gaps = 80/457 (18%)

Query  210  KDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKS  269
            ++ GL   +   +          ++ A +                 + ++    G     
Sbjct  367  EESGLPKRLLELVDQVGYKEPTPIQRAAIPIAL--------QSRDLIGVAVTGSGKTASF  418

Query  270  QHSGNAQVTQTKFLP-------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
                   +++   +        + P A+++ P+RELA+Q     ++F + +       + 
Sbjct  419  LLPLLVYISELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEARKFTQPLG---FNVVS  475

Query  323  IIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD  382
            I+GG +  +Q   L NG +I++ TPGRL D +    L LSQ  ++++DEAD ++  G+ +
Sbjct  476  IVGGHSFEEQAYSLRNGAEIIIATPGRLVDCIERRLLVLSQCCYVIMDEADRMIDLGFEE  535

Query  383  FINRMHNQIP--------------QVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTW  428
             +N++ + +P                    +  Q ++ +AT+ S  V++++ K +  P  
Sbjct  536  PVNKILDALPVTNEKPDTEEAENSAAMRSHRYRQTMMYTATMPSA-VERIARKYLRRPAI  594

Query  429  VDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEA  488
            V +       DTV   V  +  +  R          R  D+ +    RP           
Sbjct  595  VTIGSAGEAVDTVEQRVEMIAGEDKR--------KKRLADILSSGEFRPP----------  636

Query  489  IKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGD  548
                                 I+F   K +CD + +   Q G         FS V LHG 
Sbjct  637  --------------------IIVFVNIKRNCDAIAREIKQMG---------FSSVTLHGS  667

Query  549  RKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
            +   +R+  L   + G    L+ TD+A RGID+  V  V+N  + +  ++Y HRIGR GR
Sbjct  668  KTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMANSIESYTHRIGRTGR  727

Query  609  AERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            A + G+AI+ +  E   V Y +     K   +   +E
Sbjct  728  AGKSGVAITFLGNEDADVMYDLKQMLMKSPISRVPEE  764


 Score = 108 bits (270),  Expect = 5e-23, Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 1/104 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M ++ E G+   + + V+++ +  PT IQ  +IP+ L   D++  A TGSGKT +F +P+
Sbjct  363  MRSWEESGLPKRLLELVDQVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPL  422

Query  61   IQIVYETLK-DQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
            +  + E  + D+ E +K         +   +           F 
Sbjct  423  LVYISELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEARKFT  466


>sp|A4R5B8|DBP10_PYRO7 ATP-dependent RNA helicase DBP10 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=DBP10 PE=3 SV=1
Length=914

 Score = 303 bits (775),  Expect = 3e-89, Method: Composition-based stats.
 Identities = 109/474 (23%), Positives = 186/474 (39%), Gaps = 35/474 (7%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             + +GL   +   +  +       ++   +       +         V +++   G    
Sbjct  92   FQAMGLNPSLLQAITRKGFAVPTPIQRKSIPLILDRRD--------VVGMARTGSGKTAA  143

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
                   ++        A +ALI+ PSRELA QTL  +K+F K      L+ +L++GG +
Sbjct  144  FVIPMIERLRAHSARVGA-RALIMSPSRELALQTLKVVKEFGK---GTDLKTVLLVGGDS  199

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
              DQ   +    DI++ TPGR   L     L+LS ++++V DEAD L   G++  +  + 
Sbjct  200  LEDQFGFMTTNPDIIIATPGRFLHLKVEMSLDLSSIKYVVFDEADRLFEMGFATQLTEIL  259

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
            + +P         Q ++ SATL    V+  +   +  P+ V L  E  +   +      V
Sbjct  260  HSLP------PSRQTLLFSATLPRSLVE-FARAGLQDPSLVRLDAETKISPDLESAFFSV  312

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
                 +  E+ G       DV       P     +    + K  +G     A ++     
Sbjct  313  -----KGAEKEGALLHILQDVIKMPTGTPEGFKEDKDEGSKKRKRGPDRPNAKEKPTEHS  367

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
             IIF  TK   + L    +Q G         ++    +G      RK  +E F++G    
Sbjct  368  TIIFTATKFHVEYLTSILVQAG---------YAVSHAYGALDQTARKIQVEDFRRGKTNI  418

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            L+ TDVAARGIDI  +  VIN    D+ + +VHR+GR  RA + G + SLV+        
Sbjct  419  LVVTDVAARGIDIPVLANVINYDFCDQPKVFVHRVGRTARAGQKGWSYSLVSDIDAPYLL  478

Query  629  HVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVD  682
             +    G+     +    G        +  L      +   +  VE  ++   D
Sbjct  479  DLQLFLGRRLVVGQDTSAGANFASDVVLGALQR--NSIETNVEWVEKVVQESHD  530


 Score = 104 bits (258),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 34/104 (33%), Positives = 47/104 (45%), Gaps = 7/104 (7%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F  MG+ P + QA+    + +PT IQ +SIPLIL   DV+  A TGSGKT AF IP+I+ 
Sbjct  92   FQAMGLNPSLLQAITRKGFAVPTPIQRKSIPLILDRRDVVGMARTGSGKTAAFVIPMIER  151

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            +                     S   +  +        F  G+D
Sbjct  152  LRAHSARV-------GARALIMSPSRELALQTLKVVKEFGKGTD  188


>sp|A6QXC1|DBP3_AJECN ATP-dependent RNA helicase DBP3 OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=DBP3 PE=3 
SV=1
Length=487

 Score = 292 bits (746),  Expect = 3e-89, Method: Composition-based stats.
 Identities = 113/432 (26%), Positives = 182/432 (42%), Gaps = 78/432 (18%)

Query  215  AFEIPPHMKNQALFP------ACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
            AF   P   NQ   P         +++    + F             + +++   G  + 
Sbjct  72   AFSYLPSDSNQLYGPLEHFSKPTPIQSVTWPYLFA--------GRDVIGVAETGSGKTLA  123

Query  269  SQHSGNAQVTQTKFLPNAPK--ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
                   +V +     ++ +  A+I+ P+RELA Q  + + +F        +    I GG
Sbjct  124  FGVPCIRKVLEINASHSSFRISAVIITPTRELAMQIHDQLVKFT----PNGVGLACIYGG  179

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
             +  DQ   L+    ++V TPGRL D  S   LNL +V++LVLDEAD +L +G+   I  
Sbjct  180  ASKDDQRRALKK-ASVIVATPGRLKDFHSDESLNLKKVKYLVLDEADRMLDKGFEQDIKD  238

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDS----VPDTVH  442
            + + +P      ++ Q ++ +AT     V+KL+   M  P  V + G+ S        + 
Sbjct  239  IVSAMP----SSRKRQTVMFTATWP-ISVRKLATTFMKEPVTVTIGGDLSSDIRANTRIK  293

Query  443  HVVVPVNP--KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRA  500
             +V  V P  K  RL   L +                                       
Sbjct  294  QIVEVVKPENKESRLLSLLNQ-------------------------------------YQ  316

Query  501  IKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLER  560
               + MD+ ++FC  K +   +E++   +G         F    +HGD    ER  +L+ 
Sbjct  317  RGRNAMDKVLVFCLYKKEATRIERFIRSKG---------FKVAGIHGDMNQTERFNSLDA  367

Query  561  FKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            FK G V  L+ TDVAARG+DI  V  V+NVT P   ++YVHRIGR GRA   GLAI++  
Sbjct  368  FKSGSVPVLVATDVAARGLDIPAVKLVLNVTFPLTVEDYVHRIGRTGRAGSDGLAITMFT  427

Query  621  TEKEKVWYHVCS  632
               + +   + +
Sbjct  428  ENDKALSGGLVN  439


 Score = 108 bits (270),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 42/146 (29%), Positives = 59/146 (40%), Gaps = 14/146 (10%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + AFS +           E  +  PT IQ+ + P +  G DV+  AETGSGKT AF +P 
Sbjct  70   ITAFSYLPSDSNQLYGPLE-HFSKPTPIQSVTWPYLFAGRDVIGVAETGSGKTLAFGVPC  128

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC---------  111
            I+ V E        +     I    +   +  M  +D+   F     GL C         
Sbjct  129  IRKVLEINASHSSFRISAVII----TPTRELAMQIHDQLVKFTPNGVGLACIYGGASKDD  184

Query  112  QSREVKEWHGCRATKGLMKGKHYYEV  137
            Q R +K+     AT G +K  H  E 
Sbjct  185  QRRALKKASVIVATPGRLKDFHSDES  210


>sp|Q1DMX8|PRP28_COCIM Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Coccidioides immitis (strain RS) OX=246410 GN=PRP28 
PE=3 SV=2
Length=820

 Score = 301 bits (770),  Expect = 3e-89, Method: Composition-based stats.
 Identities = 97/380 (26%), Positives = 166/380 (44%), Gaps = 70/380 (18%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P A+I+ P+RELA+Q  N  +   K+ +      + I+GG +  +Q   L NG +I++
Sbjct  457  DGPYAIILAPTRELAQQIENEAR---KFCNPLGFNVVSIVGGHSLEEQSFSLRNGAEIII  513

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP------------  392
             TPGRL D +    L LSQ  ++++DEAD ++  G+ + +N++ + +P            
Sbjct  514  ATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEKPDTEEAE  573

Query  393  -------QVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
                    +    +  Q ++ +AT+ S  V++++ K +  P  V +       DTV   V
Sbjct  574  DARAMSQHLGGKDRYRQTMMYTATMPSA-VERIARKYLRRPAIVTIGNIGEAVDTVEQRV  632

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
              ++ +  R          R  D+ A    RP                            
Sbjct  633  EFISGEDKR--------KKRLADILASGEFRPP---------------------------  657

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
                I+F   K +CD + +   Q G         +S V LHG +   +R+  L   + G+
Sbjct  658  ---IIVFVNIKRNCDAVARDIKQMG---------YSSVTLHGSKTQEQREAALASVRNGN  705

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
               L+ TD+A RGID+  V  V+N  +    ++Y HRIGR GRA + G+AI+ +  E   
Sbjct  706  TDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRTGRAGKSGVAITFLGNEDAD  765

Query  626  VWYHVCSSRGKGCYNTRLKE  645
            V Y +     K   +   +E
Sbjct  766  VMYDLKQMLMKSSISRVPEE  785


 Score = 109 bits (272),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 50/103 (49%), Gaps = 1/103 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M ++ E G+   + + ++++ +  P+ IQ  +IP+ L   D++  A TGSGKT AF +P+
Sbjct  379  MRSWGESGLPKRLLEIIDKVGYKDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPL  438

Query  61   IQIVYETLK-DQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            +  + E  + D+ E +K         +   +      +    F
Sbjct  439  LVYIAELPRLDEFEWRKSDGPYAIILAPTRELAQQIENEARKF  481


>sp|A1DNG2|DBP10_NEOFI ATP-dependent RNA helicase dbp10 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 
/ FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp10 
PE=3 SV=1
Length=934

 Score = 303 bits (776),  Expect = 3e-89, Method: Composition-based stats.
 Identities = 113/495 (23%), Positives = 191/495 (39%), Gaps = 44/495 (9%)

Query  209  GKDLGLAFEIPPHMKNQAL-----FPACVLKNAELKFNFGEEEFKFPPKDGF--------  255
             +    A     ++K + +     F A  L    LK     + F  P             
Sbjct  68   AEQQTSANRKASNLKGRTVKKGGGFQAMGLSANLLK-AIARKGFSVPTPIQRKTIPVIMD  126

Query  256  ----VALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKK  311
                V +++   G           ++        A + LI+ PSRELA QTL  +K+  +
Sbjct  127  DQDVVGMARTGSGKTAAFVIPMIEKLKSHSTKVGA-RGLILSPSRELALQTLKVVKELGR  185

Query  312  YIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDE  371
                  L+ +L++GG +  +Q +++    DIV+ TPGR   L     L+LS +R++V DE
Sbjct  186  ---GTDLKSVLLVGGDSLEEQFAMMAGNPDIVIATPGRFLHLKVEMNLDLSSIRYVVFDE  242

Query  372  ADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL  431
            AD L   G++  +  + + +P         Q ++ SATL    V+  +   +  PT V L
Sbjct  243  ADRLFEMGFAAQLTEILHGLPA------NRQTLLFSATLPKSLVE-FARAGLQEPTLVRL  295

Query  432  KGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT----DDVHAKDNTRPGANSPEMWSE  487
              E  +   + +    V               +          ++      A++    ++
Sbjct  296  DTESKISPDLQNAFFSVKSSEKEGALLYILQEVIKMPTGPTEVSQQRKEEDASAKNWKNK  355

Query  488  AIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHG  547
              K  + E AV   +       I+F  TK   D L     + G         F+   ++G
Sbjct  356  KRKRAEMEKAVNMRESPTKHSTIVFAATKHHVDYLYSLLSEAG---------FAVSYVYG  406

Query  548  DRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVG  607
                  RK  ++ F+ G    L+ TDVAARGIDI  +  VIN   P + + ++HR+GR  
Sbjct  407  SLDQTARKIQVQNFRTGMTNILVVTDVAARGIDIPILANVINYDFPSQPKIFIHRVGRTA  466

Query  608  RAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLN  667
            RA R G + SLV          +    G+     R  E G    +  ++   S   + L+
Sbjct  467  RAGRKGWSYSLVRDADAPYLLDLQLFLGRRLVVGR--EFGDQVNFAEDVVTGSLPRDGLS  524

Query  668  CTISQVEPDIKVPVD  682
             +   V   +    D
Sbjct  525  QSCEWVTKVLDDNAD  539


 Score = 100 bits (250),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 30/104 (29%), Positives = 49/104 (47%), Gaps = 7/104 (7%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F  MG+   + +A+    + +PT IQ ++IP+I+   DV+  A TGSGKT AF IP+I+ 
Sbjct  92   FQAMGLSANLLKAIARKGFSVPTPIQRKTIPVIMDDQDVVGMARTGSGKTAAFVIPMIEK  151

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            +       + G +G        S   +  +           G+D
Sbjct  152  LKSH--STKVGARG-----LILSPSRELALQTLKVVKELGRGTD  188


>sp|Q5APT8|DBP3_CANAL ATP-dependent RNA helicase DBP3 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP3 
PE=3 SV=1
Length=564

 Score = 294 bits (752),  Expect = 3e-89, Method: Composition-based stats.
 Identities = 101/386 (26%), Positives = 168/386 (44%), Gaps = 67/386 (17%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
              L + P+RELA Q  +N+ +      +  +  + + GGV+  DQ+  ++   ++VV TP
Sbjct  225  SVLCISPTRELALQIYDNLIEL---TADSGVNCVAVYGGVSKDDQIRKIKT-ANVVVATP  280

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
            GRL DL++ G +NL +V +LVLDEAD +L +G+ + I  + +      +     Q ++ +
Sbjct  281  GRLVDLINDGAINLGKVNYLVLDEADRMLEKGFEEDIKTIIS-----NTSNSERQTLMFT  335

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGED--SVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
            AT    +V++L+   M+ P  V +   D  S    +  VV  +N                
Sbjct  336  ATWPK-EVRELANNFMNSPVKVTVGDRDELSANKRITQVVEVINK---------------  379

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                                 +  K L          E   ++ +IF   K +   +E +
Sbjct  380  --------------------FDKEKKLIQLLRKYNANESSDNKILIFALYKKEASRIENF  419

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
                      K ++FS   +HGD    +R   L  FK G    L+ TDVAARG+DI  V 
Sbjct  420  L---------KRNRFSVAAIHGDLSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPNVK  470

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS-----------SR  634
             VIN+T P   ++YVHRIGR GRA   G A +L   +++ +   +C+             
Sbjct  471  VVINLTFPLTIEDYVHRIGRTGRAGAKGTAHTLFTEDEKHLSGALCNILRGANQPVPEEL  530

Query  635  GKGCYNTRLKEDGGCTIWYNEMQLLS  660
             K   +T+ K       +Y ++ +  
Sbjct  531  LKFGGHTKKKAHSVYGAFYKDVDMTK  556


 Score = 95.2 bits (235),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 38/141 (27%), Positives = 57/141 (40%), Gaps = 19/141 (13%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F ++ +   I   + +  +  PT IQ+ S P +L G DV+  AETGSGKT AF +P 
Sbjct  154  ILSFDQVQLTSAITSKLSK--FDKPTPIQSVSWPFLLSGKDVIGVAETGSGKTFAFGVPA  211

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC---------  111
            I  +  T          KT      S   +  +  YD        S   C          
Sbjct  212  INNIITTGN-------TKTLSVLCISPTRELALQIYDNLIELTADSGVNCVAVYGGVSKD  264

Query  112  -QSREVKEWHGCRATKGLMKG  131
             Q R++K  +   AT G +  
Sbjct  265  DQIRKIKTANVVVATPGRLVD  285


>sp|A6QUM7|DBP10_AJECN ATP-dependent RNA helicase DBP10 OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=DBP10 
PE=3 SV=1
Length=900

 Score = 302 bits (774),  Expect = 3e-89, Method: Composition-based stats.
 Identities = 114/556 (21%), Positives = 210/556 (38%), Gaps = 48/556 (9%)

Query  197  DIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFV  256
            ++    VK     + LGL   +   +  +       ++   +     +++         V
Sbjct  76   NLRGRTVKKGGGFQSLGLNAALLKAITRKGFSVPTPIQRKTIPLVLDDQD--------VV  127

Query  257  ALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNP  316
             +++   G           ++ ++       +ALI+ PSRELA QTL  +K+  +     
Sbjct  128  GMARTGSGKTAAFVIPMIEKL-KSHSAKFGSRALILSPSRELALQTLKVVKELGR---GT  183

Query  317  KLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL  376
             L+ +L++GG +  +Q   + +  DI++ TPGR   L     L+LS +R++V DEAD L 
Sbjct  184  DLKSVLLVGGDSLEEQFEYMASNPDIIIATPGRFLHLKVEMSLDLSSIRYVVFDEADRLF  243

Query  377  SQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDS  436
              G++  +  + + +P         Q ++ SATL    V+  +   +  P  + L  E  
Sbjct  244  EMGFATQLTEILHGLPSS------RQTLLFSATLPKSLVE-FARAGLQEPILIRLDAESK  296

Query  437  VPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEY  496
            +   + +    V        E      +          T     + E    + K  + E 
Sbjct  297  ISPDLQNAFFTVKSSEK---EGALLHVLHEVIKIPTGETEALKRAKEEVKHSKKRKRSEV  353

Query  497  AVRAIKEHKMD-QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERK  555
               + KE   +   IIF  TK   D L       G         F+    +G      RK
Sbjct  354  TSNSHKESPTEHSTIIFTATKHHVDYLTSILRTSG---------FAVSYAYGSLDQTARK  404

Query  556  QNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLA  615
              ++ F+ G    L+ TDVAARGIDI  +  VIN   P + + +VHR+GR  RA + G +
Sbjct  405  IEVQNFRDGITHILVVTDVAARGIDIPILSNVINYDFPSQPKIFVHRVGRTARAGKTGWS  464

Query  616  ISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLL--SEIEEHLNCTISQV  673
             SL+          +    G+     R             +  L   ++  +       +
Sbjct  465  YSLIRESDTPYLLDLQLFLGRPLILGRGSGQQLNYAENVVVGSLPRDKVARYTEWMTKLL  524

Query  674  EPDIKVPVD---EFDGKVTYGQKRAAGGGSYKGHVDILAPTVQ----------ELAALEK  720
            + D+ + +       G+  Y + R +  G        +  + +          E + LE+
Sbjct  525  DEDVDIELQREVAIKGEKLYMRTRNSASGESAKRAKAVVESAEWMMVHPLFNDESSRLEE  584

Query  721  EAQTSFLHL-GYLPNQ  735
            + +     + GY P +
Sbjct  585  QREKMLARVGGYKPQE  600


 Score = 99.8 bits (247),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 28/104 (27%), Positives = 46/104 (44%), Gaps = 7/104 (7%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F  +G+   + +A+    + +PT IQ ++IPL+L   DV+  A TGSGKT AF IP+I+ 
Sbjct  88   FQSLGLNAALLKAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIPMIEK  147

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            +               +     S   +  +           G+D
Sbjct  148  LKSHSAKF-------GSRALILSPSRELALQTLKVVKELGRGTD  184


>sp|Q0U7S9|DHH1_PHANO ATP-dependent RNA helicase DHH1 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=DHH1 PE=3 SV=1
Length=522

 Score = 292 bits (748),  Expect = 3e-89, Method: Composition-based stats.
 Identities = 111/425 (26%), Positives = 173/425 (41%), Gaps = 68/425 (16%)

Query  213  GLAFE--IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            GL FE           +F A   K + +     +EE       G   L++A +G   K+ 
Sbjct  48   GLEFEDFFIKRELMMGIFEAGFEKPSPI-----QEETIPVALTGRDILARAKNG-TGKTA  101

Query  271  HSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
                  + +     +  +ALI+ P+RELA QT    K   K++    +  ++  GG   +
Sbjct  102  AFVIPTLERVNPKISKTQALILVPTRELALQTSQVCKTLGKHLG---INVMVSTGGTGLK  158

Query  331  DQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ  390
            D +  L + V I+VGTPGR+ DL   G  +LS  +  V+DEAD LLS  ++  + ++   
Sbjct  159  DDIIRLSDPVHIIVGTPGRILDLAGKGVADLSTCQTFVMDEADKLLSPEFTPVVEQLLGF  218

Query  391  IPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNP  450
             P      K  QV++ SAT     VK   +K M+ P  ++L  ++     +      V  
Sbjct  219  HP------KDRQVMLFSATFPIV-VKTFKDKHMNSPYEINLM-DELTLRGITQYYAFVEE  270

Query  451  KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAI  510
            K                                         K         + +++Q+I
Sbjct  271  KQ----------------------------------------KVHCLNTLFNKLQINQSI  290

Query  511  IFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLI  570
            IFC +    + L +   + G         +SC   H     H R +    F+ G  R L+
Sbjct  291  IFCNSTNRVELLAKKITELG---------YSCFYSHARMLQHNRNRVFHDFRNGVCRNLV  341

Query  571  CTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
            C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR   +GLAI+L+  E     Y +
Sbjct  342  CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYRI  401

Query  631  CSSRG  635
                G
Sbjct  402  EQELG  406


 Score = 96.7 bits (239),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 40/91 (44%), Gaps = 9/91 (10%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +  +  E+   + E  +  P+ IQ E+IP+ L G D+L  A+ G+GKT AF IP ++ 
Sbjct  51   FEDFFIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER  110

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
            V   +   Q                 +  + 
Sbjct  111  VNPKISKTQ---------ALILVPTRELALQ  132


>sp|Q55BR9|DDX49_DICDI Probable ATP-dependent RNA helicase ddx49 
OS=Dictyostelium discoideum OX=44689 GN=ddx49 PE=3 SV=1
Length=508

 Score = 292 bits (747),  Expect = 4e-89, Method: Composition-based stats.
 Identities = 106/477 (22%), Positives = 181/477 (38%), Gaps = 69/477 (14%)

Query  224  NQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDG-YIVKSQHSGNAQ------  276
            +   F    L    +  N  +  FK P       + +   G  I+ S  +G+ +      
Sbjct  2    SDKTFEELGLTTWLVA-NCKQLGFKAPSNIQANTIPEILKGRDIIASAKTGSGKTASFAI  60

Query  277  --VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLS  334
              + Q    P    A+I+ P+RELA Q           ++   +   ++IGG+    Q  
Sbjct  61   PILNQLSEDPYGVFAVILTPTRELAVQIGEQFNAIGAPMN---VNCSVVIGGIDNVTQAL  117

Query  335  VLENGVDIVVGTPGRLDDLVSTG-KLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ  393
            +L+    I+V TPGRL   ++ G K+ L   +FLVLDEAD LL + +   I  +   +P 
Sbjct  118  ILDKRPHIIVATPGRLASHLNNGLKIALKFCKFLVLDEADRLLGEDFELEIASILEHLP-  176

Query  394  VTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTD  453
                 ++ Q ++ SAT+   ++ KL    ++ P   +   +    DT+    + +   T 
Sbjct  177  ---PPEKRQTLLFSATMTK-NLTKLDSIALNKPFIFEDNSKYDTVDTLKQEYIYMPAPT-  231

Query  454  RLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFC  513
                                                   K  Y V  +K+H+   AI+F 
Sbjct  232  ---------------------------------------KDCYLVYILKKHEGSSAIVFV  252

Query  514  RTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTD  573
                  + ++    +              V LH       R   L+ FK G V+ L+ TD
Sbjct  253  NNCYAVEAVKGMLNKL---------DIPSVSLHSFLDQKSRLAALKTFKSGKVKVLVATD  303

Query  574  VAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
            VA+RG+DI  V  VIN  L +  ++Y+HR+GR  R  R G AIS +      +   +   
Sbjct  304  VASRGLDIPDVQIVINYKLSNSSKDYIHRVGRTARFGRSGRAISFITPHDVSLIKGIEEI  363

Query  634  RGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQV-EPDIKVPVDEFDGKVT  689
              K     +  +D               +E HL+     V + + +   +E   ++ 
Sbjct  364  IKKQLELYKTDDDEVFRHLKEASTARKIVEIHLDEIEFGVKQKERRTERNELQKQLK  420


 Score = 99.4 bits (246),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 26/110 (24%), Positives = 52/110 (47%), Gaps = 9/110 (8%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F E+G+   +    +++ +  P++IQA +IP IL G D++ +A+TGSGKT +F+IP++
Sbjct  4    KTFEELGLTTWLVANCKQLGFKAPSNIQANTIPEILKGRDIIASAKTGSGKTASFAIPIL  63

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
              + E                   +   +  +   ++ +A     +  C 
Sbjct  64   NQLSEDPY---------GVFAVILTPTRELAVQIGEQFNAIGAPMNVNCS  104


>sp|Q91VN6|DDX41_MOUSE Probable ATP-dependent RNA helicase DDX41 
OS=Mus musculus OX=10090 GN=Ddx41 PE=1 SV=2
Length=622

 Score = 295 bits (755),  Expect = 4e-89, Method: Composition-based stats.
 Identities = 99/444 (22%), Positives = 183/444 (41%), Gaps = 74/444 (17%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K+ K++     I   +K + +     ++   +                 + ++    G  
Sbjct  181  KSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILS--------GRDMIGIAFTGSGKT  232

Query  267  VK-SQHSGNAQVTQTKFLP----NAPKALIVEPSRELAEQTLNNIK---QFKKYIDNPKL  318
            +  +       + Q K LP      P  LI+ PSRELA QT   ++   +  +   +P L
Sbjct  233  LVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLL  292

Query  319  RELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQ  378
            R  L IGG++ ++Q+  + +GV ++V TPGRL DL+    ++L   R+L LDEAD ++  
Sbjct  293  RCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDM  352

Query  379  GYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVP  438
            G+   I  + +          + Q ++ SAT+    ++  ++  +  P  +++    +  
Sbjct  353  GFEGDIRTIFSYF------KGQRQTLLFSATMPK-KIQNFAKSALVKPVTINVGRAGAAS  405

Query  439  DTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAV  498
              V   V  V  +                                         K  Y +
Sbjct  406  LDVIQEVEYVKEEA----------------------------------------KMVYLL  425

Query  499  RAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNL  558
              +++      +IF   K D D + +Y + +G            V +HG +   ER + +
Sbjct  426  ECLQKTPP-PVLIFAEKKADVDAIHEYLLLKG---------VEAVAIHGGKDQEERTKAI  475

Query  559  ERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            E F++G    L+ TDVA++G+D   + +VIN  +P+E +NYVHRIGR GR+   G+A + 
Sbjct  476  EAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTF  535

Query  619  VAT-EKEKVWYHVCSSRGKGCYNT  641
            +     E V   + +   +     
Sbjct  536  INKACDESVLMDLKALLLEAKQKV  559


 Score = 98.3 bits (243),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 1/102 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F EM     I + +++   L PT IQ + IP IL G D++  A TGSGKT  F++PV
Sbjct  180  IKSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV  239

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            I    E  K     K+ +           +     +     +
Sbjct  240  IMFCLEQEKRLPFSKR-EGPYGLIICPSRELARQTHGILEYY  280


>sp|Q4HZ42|DBP10_GIBZE ATP-dependent RNA helicase DBP10 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 
/ NRRL 31084 / PH-1) OX=229533 GN=DBP10 PE=3 SV=1
Length=897

 Score = 302 bits (773),  Expect = 4e-89, Method: Composition-based stats.
 Identities = 123/533 (23%), Positives = 200/533 (38%), Gaps = 50/533 (9%)

Query  209  GKDLGLAFEIPPHMKNQAL-----FPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPD  263
                  +F    ++K + +     F A  L N  LK     + F  P      A+    D
Sbjct  60   ALQQAASFRKATNLKGRTVKKGGGFQAMGLNNNLLK-AITRKGFSVPTPIQRKAIPLILD  118

Query  264  GYIVKSQHSGNAQVTQTKFLPN-----------APKALIVEPSRELAEQTLNNIKQFKKY  312
               +       +  T    +P              +ALI+ PSRELA QTL  +K+F + 
Sbjct  119  RKDLVGMARTGSGKTAAFVIPMIEKLRAHSARFGTRALIMSPSRELAIQTLKVVKEFSR-  177

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
                 L+ +L++GG +  +Q   +    DIV+ TPGR   L     L+LS ++++V DEA
Sbjct  178  --GTDLKCVLLVGGDSLEEQFGYMAANPDIVIATPGRFLHLKVEMSLDLSSIKYVVFDEA  235

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D L   G++  +  + + +P         Q ++ SATL +  V+  +   +  P+ V L 
Sbjct  236  DRLFEMGFAAQLTEILHALP------PSRQSLLFSATLPASLVE-FARAGLQDPSLVRLD  288

Query  433  GEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKIL  492
             E  V   +      V              HI  D +     +  G N+        +  
Sbjct  289  AEQKVSPDLESAFFAVKGAEKEG----SLLHILHDVIKMPVGSPEGVNNDSEKGSKKRKR  344

Query  493  KGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPH  552
              +       EH     IIF  TK   + L    I  G         F+   ++G     
Sbjct  345  GADGGSGKPTEH---STIIFTATKHHVEYLANLLIYAG---------FAVSYVYGSLDQT  392

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM  612
             R+  +E F+ G    L+ TDVAARGIDI  +  VIN   P + + +VHR+GR  RA + 
Sbjct  393  ARRIQVEDFRMGKTNILVVTDVAARGIDIPVLANVINFDFPPQPKVFVHRVGRTARAGQR  452

Query  613  GLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL-LSEIEEHLNCTIS  671
            G + SLV          +    GK     +  ++   +       L    +E H+     
Sbjct  453  GWSYSLVRDTDAPYLIDLQLFLGKKLVVGQETKNPSFSEDVVVGALKRDPVEGHVEWFNK  512

Query  672  QVEPDIKVP----VDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEK  720
             +     +     V     K+    + +A   S K   +++    Q    L  
Sbjct  513  SLHESEDINALRGVAVKAEKLYLRTRNSAASQSAKRSKELVGS--QGWTQLHP  563


 Score = 100 bits (249),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 32/108 (30%), Positives = 49/108 (45%), Gaps = 7/108 (6%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F  MG+   + +A+    + +PT IQ ++IPLIL   D++  A TGSGKT AF IP+I+ 
Sbjct  84   FQAMGLNNNLLKAITRKGFSVPTPIQRKAIPLILDRKDLVGMARTGSGKTAAFVIPMIEK  143

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
            +               T     S   +  +        F+ G+D  C 
Sbjct  144  LRAHSARF-------GTRALIMSPSRELAIQTLKVVKEFSRGTDLKCV  184


>sp|A5DVM3|IF4A_LODEL ATP-dependent RNA helicase eIF4A OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=TIF1 PE=3 SV=1
Length=397

 Score = 288 bits (737),  Expect = 4e-89, Method: Composition-based stats.
 Identities = 110/426 (26%), Positives = 185/426 (43%), Gaps = 71/426 (17%)

Query  228  FPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN------AQVTQ  279
            F    LK   ++  F +G E      +   + +++  D        +G       + + +
Sbjct  25   FDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQR  84

Query  280  TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
                  + +ALI+ P+RELA Q  N I     Y++   +     IGG +  D +   ++G
Sbjct  85   IDENEKSTQALILAPTRELALQIKNVITSIGLYLN---VTVHASIGGTSMSDDIEAFKSG  141

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
            V IVVGTPGR+ D++        +V+  +LDEAD +LS G+ + I  +   +P+ T    
Sbjct  142  VQIVVGTPGRVFDMIERRYFRTDKVKMFILDEADEMLSSGFKEQIYNIFRLLPETT----  197

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              QV++ SAT+   DV +++ K M+ P  + +K ++   + +    + V           
Sbjct  198  --QVVLLSATMP-QDVLEVTTKFMNNPVRILVKKDELTLEGIKQYFINVE----------  244

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
                                         ++  K +  V       + QA+IFC T+   
Sbjct  245  -----------------------------VEDYKFDCLVDLYDSISVTQAVIFCNTRSKV  275

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            + L     +Q         +F+   +H D    ER   ++ F+ G  R LI TD+ ARGI
Sbjct  276  EFLTNKLREQ---------KFTVSAIHADLPQGERDTIMKEFRSGSSRILISTDLLARGI  326

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCY  639
            D+  V  VIN  LP  K+NY+HRIGR GR  R G+AI+ V  +   +   +        Y
Sbjct  327  DVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDKDVGMMREIEK-----FY  381

Query  640  NTRLKE  645
            +T++ E
Sbjct  382  STQITE  387


 Score = 93.3 bits (230),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 23/101 (23%), Positives = 44/101 (44%), Gaps = 9/101 (9%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F ++ + P I + +    +  P+ IQ  +I  I  G DVL  A++G+GKT  F+I  +Q 
Sbjct  25   FDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQR  84

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            + E  K  Q             +   +  +   +  ++  +
Sbjct  85   IDENEKSTQ---------ALILAPTRELALQIKNVITSIGL  116


>sp|Q2U5A2|DHH1_ASPOR ATP-dependent RNA helicase dhh1 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dhh1 
PE=3 SV=1
Length=511

 Score = 292 bits (747),  Expect = 4e-89, Method: Composition-based stats.
 Identities = 111/425 (26%), Positives = 172/425 (40%), Gaps = 68/425 (16%)

Query  213  GLAFEIP--PHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            GL FE           +F A   K + +     +EE       G   L++A +G   K+ 
Sbjct  46   GLEFEDFYIKRELMMGIFEAGFEKPSPI-----QEETIPVALTGRDILARAKNG-TGKTA  99

Query  271  HSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
                  + +        +ALI+ P+RELA QT +  K   K++    +  ++  GG    
Sbjct  100  AFVIPTLERINPKSTKTQALILVPTRELALQTSHVCKTLGKHLG---INVMVTTGGTGLM  156

Query  331  DQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ  390
            D +  L + V I+VGTPGR+ DL S G  +LS+    V+DEAD LLS  ++  I ++ + 
Sbjct  157  DDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSF  216

Query  391  IPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNP  450
             P      K  QV++ SAT     VK   +K M  P  ++L  ++     +      V  
Sbjct  217  HP------KDRQVMLFSATFP-LIVKSFKDKHMRNPYEINLM-DELTLRGITQYYAFVEE  268

Query  451  KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAI  510
            K                                         K         + +++Q+I
Sbjct  269  KQ----------------------------------------KVHCLNTLFSKLQINQSI  288

Query  511  IFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLI  570
            IFC +    + L +   + G         +SC   H       R +    F+ G  R L+
Sbjct  289  IFCNSTNRVELLAKKITELG---------YSCFYSHARMLQQHRNRVFHDFRNGVCRNLV  339

Query  571  CTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
            C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR   +GLAI+L+  +     Y +
Sbjct  340  CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKI  399

Query  631  CSSRG  635
                G
Sbjct  400  EQELG  404


 Score = 97.5 bits (241),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 40/91 (44%), Gaps = 9/91 (10%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +  +  E+   + E  +  P+ IQ E+IP+ L G D+L  A+ G+GKT AF IP ++ 
Sbjct  49   FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER  108

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
            +           K   T         +  + 
Sbjct  109  I---------NPKSTKTQALILVPTRELALQ  130


>sp|A5DDN0|SUB2_PICGU ATP-dependent RNA helicase SUB2 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=SUB2 PE=3 
SV=3
Length=432

 Score = 289 bits (740),  Expect = 4e-89, Method: Composition-based stats.
 Identities = 104/437 (24%), Positives = 171/437 (39%), Gaps = 72/437 (16%)

Query  232  VLKNAELKFNFGEEEFKFPPKDGFV----------ALSKAPDGYIVKSQHSGNAQVTQTK  281
             L   EL    G+  F+ P +   V           L +A  G + K+     + + Q  
Sbjct  53   FLLKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSG-LGKTAVFVLSTLQQLD  111

Query  282  FLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG--  339
             +P     L++  +RELA Q  N   +F KY+  P ++  +  GG+     +  L+N   
Sbjct  112  PVPGEITTLVICHTRELAYQIRNEYARFSKYM--PDVKTEVFYGGIPIAKDIEKLKNKDT  169

Query  340  -VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
               IVV TPGRL  LV    + L+ V+  V+DE D +L    +  + R    I + T   
Sbjct  170  CPHIVVATPGRLHALVEEKAIRLNNVKSFVIDECDKVLE---AIDMRRDVQDIFRNTPHQ  226

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDS-VPDTVHHVVVPVNPKTDRLWE  457
            K  QV++ SATL S +++ + +K M  P  + +  E       +    + ++ K      
Sbjct  227  K--QVMMFSATL-SQEIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQYYLKLDEKE-----  278

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
                                               K       +   + +Q IIF ++  
Sbjct  279  -----------------------------------KNRKLADLLDSLEFNQVIIFVKSTS  303

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
              + L +  +            F  + +H      ER    + FK+ + R  + TDV  R
Sbjct  304  RANELNKLLV---------ASNFPSIAVHSAMPQEERIARYKSFKEFNKRICVSTDVFGR  354

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
            GIDI  +   IN  LP+E   Y+HR+GR GR    GLAIS V +++++       SR   
Sbjct  355  GIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLAISFVGSKEDEEVLEKIQSRFDV  414

Query  638  CYNTRLKEDGGCTIWYN  654
                  +E    + + N
Sbjct  415  KITEFPEEGVDSSTYMN  431


 Score = 79.4 bits (194),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 44/103 (43%), Gaps = 9/103 (9%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F +  + PE+ +A+ +  +  P+++Q   IP  + G DVL  A++G GKT  F +  +
Sbjct  48   TGFRDFLLKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTL  107

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            Q +     D   G+     I        +      +  + F+ 
Sbjct  108  QQL-----DPVPGEITTLVICH----TRELAYQIRNEYARFSK  141


>sp|Q2HEB0|PRP28_CHAGB Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 
/ DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=PRP28 
PE=3 SV=1
Length=705

 Score = 297 bits (761),  Expect = 4e-89, Method: Composition-based stats.
 Identities = 94/423 (22%), Positives = 163/423 (39%), Gaps = 75/423 (18%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFL-----PNAPKALIVEPSRELAEQ  301
                     + ++    G            +++   L      + P ALI+ P+REL +Q
Sbjct  301  PIAQQARDLIGVAVTGSGKTAAFLLPLLVYISELPPLTEFNKNDGPYALILAPTRELVQQ  360

Query  302  TLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNL  361
                 ++F           + I+GG +  +Q   L NG +I+V TPGRL D +    L  
Sbjct  361  IETEARKFA---GPLGFTVVSIVGGHSLEEQAFALRNGAEIIVATPGRLVDCLERRLLVF  417

Query  362  SQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG-------------------KRLQ  402
            SQ  ++++DEAD ++ QG+ + + ++ + +P                         +  Q
Sbjct  418  SQCCYIIMDEADRMIDQGFEEPLTKILDALPVANEKPDTEDAENSQLMSRYLGGKDRYRQ  477

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
             ++ +AT+    V+K+++K +  P  V +       DTV   V  V+ +  R        
Sbjct  478  TMMYTATMPPL-VEKIAKKYLRRPAIVTIGNAGEAVDTVEQRVEFVSGEDKR--------  528

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
                                          K                I+F   K +C+ +
Sbjct  529  ------------------------------KRRLQEILNSGQFKPPVIVFVNIKRNCEMV  558

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
             +     G         +S V LHG +   +R+ +L   + G    L+ TD+A RGID+ 
Sbjct  559  AKDIKSWG---------YSTVTLHGSKTQEQREASLASVRNGQANILVATDLAGRGIDVA  609

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTR  642
             V  V+N  +P   + Y HRIGR GRA + G+AI+ +  E   V Y +     K   +  
Sbjct  610  DVSLVVNFNMPSSIEAYTHRIGRTGRAGKSGVAITFLGNEDSDVMYDLKQIISKSSISKV  669

Query  643  LKE  645
             +E
Sbjct  670  PEE  672


 Score = 105 bits (261),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 45/103 (44%), Gaps = 1/103 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M +++E  +   + + VE + +  PT IQ  +IP+     D++  A TGSGKT AF +P+
Sbjct  268  MRSWAESNLPRRLLEIVENVGYDEPTPIQRAAIPIAQQARDLIGVAVTGSGKTAAFLLPL  327

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
            +  + E L    E  K         +   +           FA
Sbjct  328  LVYISE-LPPLTEFNKNDGPYALILAPTRELVQQIETEARKFA  369


>sp|A3LST5|SUB2_PICST ATP-dependent RNA helicase SUB2 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=SUB2 PE=3 SV=1
Length=433

 Score = 289 bits (740),  Expect = 4e-89, Method: Composition-based stats.
 Identities = 106/437 (24%), Positives = 171/437 (39%), Gaps = 72/437 (16%)

Query  232  VLKNAELKFNFGEEEFKFPPKDGFV----------ALSKAPDGYIVKSQHSGNAQVTQTK  281
             L   EL    G+  F+ P +   V           L +A  G + K+     + + Q  
Sbjct  54   FLLKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSG-LGKTAVFVLSTLQQLD  112

Query  282  FLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG--  339
             +P     L++  +RELA Q  N   +F KY+  P ++  +  GG   +  +  L++   
Sbjct  113  PVPGEISTLVICHTRELAYQIRNEYARFSKYM--PDVKTEVFYGGTPIKRDIEKLKSKDT  170

Query  340  -VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
               IVV TPGRL  LV+   + LS V+  V+DE D +L    S  + R    I + T   
Sbjct  171  CPHIVVATPGRLHALVNEKAIRLSNVKSFVIDECDKVLE---SIDMRRDVQDIFRATPHQ  227

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDS-VPDTVHHVVVPVNPKTDRLWE  457
            K  QV++ SATL S +++ + +K M  P  + +  E       +    + +  K      
Sbjct  228  K--QVMMFSATL-SQEIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQYYIKLEEKE-----  279

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
                                               K       +   + +Q IIF ++  
Sbjct  280  -----------------------------------KNRKLSDLLDSLEFNQVIIFVKSTQ  304

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
              + L +               F  + +H      ER +    FK+ + R  + TDV  R
Sbjct  305  RANELNKLLC---------SCNFPSIAVHSGLPQEERIERYRSFKEFNKRICVSTDVFGR  355

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
            GIDI  +   IN  LP+E   Y+HR+GR GR    GLAISLV +++++       SR   
Sbjct  356  GIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLAISLVGSKEDEEVLEKIQSRFDV  415

Query  638  CYNTRLKEDGGCTIWYN  654
                  +E    + + N
Sbjct  416  KITEFPEEGVDPSTYMN  432


 Score = 79.0 bits (193),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 44/103 (43%), Gaps = 9/103 (9%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F +  + PE+ +A+ +  +  P+++Q   IP  + G DVL  A++G GKT  F +  +
Sbjct  49   TGFRDFLLKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTL  108

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            Q +     D   G+     I        +      +  + F+ 
Sbjct  109  QQL-----DPVPGEISTLVICH----TRELAYQIRNEYARFSK  142


>sp|A4RBS3|SUB2_PYRO7 ATP-dependent RNA helicase SUB2 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=SUB2 PE=3 SV=1
Length=436

 Score = 289 bits (740),  Expect = 5e-89, Method: Composition-based stats.
 Identities = 104/416 (25%), Positives = 168/416 (40%), Gaps = 70/416 (17%)

Query  232  VLKNAELKFNFGEEEFKFPPKDGFVALSKA-PDGYIVKSQHSGNAQ--------VTQTKF  282
             L   EL    G+  F+ P +     + +A   G I+    SG  +        + Q + 
Sbjct  57   FLLKPELLRAIGDCGFEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEP  116

Query  283  LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG---  339
            +      L++  +RELA Q  N   +F KY+  P ++  +  GG   +    +L+N    
Sbjct  117  VAGECSVLVMCHTRELAFQIRNEYNRFSKYM--PDIKTGVFFGGTPIQKDAELLKNKETH  174

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
              I+VGTPGRL+ LV    L LS VR  VLDE D +L       + R   +I + T   K
Sbjct  175  PHIIVGTPGRLNALVRDKFLRLSSVRIFVLDECDKMLD---QIDMRRDVQEIFRATPQQK  231

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDS-VPDTVHHVVVPVNPKTDRLWER  458
              QV++ SATL S ++K + +K M  PT   +  +       +    V +  K       
Sbjct  232  --QVMMFSATL-SDEIKPICKKFMQNPTEHYVDEDTKLTLHGLQQYFVALEEKE------  282

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
                                              K       + + + +Q IIF ++ + 
Sbjct  283  ----------------------------------KNRKLNELLDDLQFNQVIIFVKSTLR  308

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
               L++   +           F  + +H      ER +  + FK+ + R  + TDV  RG
Sbjct  309  ATELDKLLRE---------CNFPSIAVHSGVSQEERIRRYKEFKEFNKRICVATDVFGRG  359

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            IDI  +   IN  +P +  +Y+HR+GR GR    GLA+S V  +++K        R
Sbjct  360  IDIERINLAINYDMPADADSYLHRVGRAGRFGTKGLAVSFVTNDQDKEVLTAIEKR  415


 Score = 77.9 bits (190),  Expect = 8e-14, Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 0/63 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F +  + PE+ +A+ +  +  P+++Q   IP  + GGD++  A++G GKT  F +  +
Sbjct  52   TGFRDFLLKPELLRAIGDCGFEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTL  111

Query  62   QIV  64
            Q V
Sbjct  112  QQV  114


>sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis 
thaliana OX=3702 GN=RH42 PE=1 SV=2
Length=1166

 Score = 306 bits (783),  Expect = 6e-89, Method: Composition-based stats.
 Identities = 119/498 (24%), Positives = 197/498 (40%), Gaps = 109/498 (22%)

Query  210  KDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKS  269
               GL  +I   MK         ++   L                 + ++K   G   K+
Sbjct  532  HQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMS--------GRDCIGVAKTGSG---KT  580

Query  270  QHSGNAQVTQTKFLP-----NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
                   +   K  P     + P  L++ P+REL +Q  ++I++F K +    +R + + 
Sbjct  581  LGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLG---IRCVPVY  637

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLV---STGKLNLSQVRFLVLDEADGLLSQGYS  381
            GG     Q+S L+ G +IVV TPGR+ D++   S    NL +V FLV+DEAD +   G+ 
Sbjct  638  GGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFE  697

Query  382  DFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV  441
              I R+   I          Q ++ SAT     V+ L+ K+++ P  + + G   V   +
Sbjct  698  PQITRIIQNI------RPERQTVLFSATFP-RQVETLARKVLNKPVEIQVGGRSVVNKDI  750

Query  442  HHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI  501
              +V  V P++DR    L                         WSE              
Sbjct  751  TQLV-EVRPESDRFLRLLELLG--------------------EWSEK-------------  776

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
                  + ++F +++  CD L +  I+           + C+ LHG +   +R+  +  F
Sbjct  777  -----GKILVFVQSQEKCDALYRDMIK---------SSYPCLSLHGGKDQTDRESTISDF  822

Query  562  KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT  621
            K      LI T VAARG+D+  +  V+N   P+  ++YVHR+GR GRA R G A++ ++ 
Sbjct  823  KNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISE  882

Query  622  EKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPV  681
            +  K    +  +                                L  +   V  D+K   
Sbjct  883  DDAKYAPDLVKA--------------------------------LELSEQPVPDDLKALA  910

Query  682  DEFDGKVTYGQKRAAGGG  699
            D F  KV  G ++A G G
Sbjct  911  DGFMVKVKQGIEQAHGTG  928


 Score = 103 bits (257),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 33/151 (22%), Positives = 64/151 (42%), Gaps = 20/151 (13%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            + + G+  +I   ++++++  P  IQ +++P+I+ G D +  A+TGSGKT  F +P+++ 
Sbjct  531  WHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRH  590

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI----------GSDGLCCQS  113
            +    KDQ   + G   I    +   +     +     F+           G  G+  Q 
Sbjct  591  I----KDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQI  646

Query  114  REVKE-WHGCRATKGLMKGKHYYEVSCHDQG  143
             E+K        T G        ++ C   G
Sbjct  647  SELKRGTEIVVCTPGR-----MIDILCTSSG  672


>sp|Q9UJV9|DDX41_HUMAN Probable ATP-dependent RNA helicase DDX41 
OS=Homo sapiens OX=9606 GN=DDX41 PE=1 SV=2
Length=622

 Score = 295 bits (754),  Expect = 6e-89, Method: Composition-based stats.
 Identities = 106/447 (24%), Positives = 185/447 (41%), Gaps = 86/447 (19%)

Query  218  IPPHMKN--QALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI---VKSQHS  272
            IPP +K+  +  FPA +L+         ++    P       +     G     +    S
Sbjct  176  IPPPIKSFKEMKFPAAILRG------LKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGS  229

Query  273  GNAQ----------VTQTKFLP----NAPKALIVEPSRELAEQTLNNIK---QFKKYIDN  315
            G             + Q K LP      P  LI+ PSRELA QT   ++   +  +   +
Sbjct  230  GKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSS  289

Query  316  PKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGL  375
            P LR  L IGG++ ++Q+  + +GV ++V TPGRL DL+    ++L   R+L LDEAD +
Sbjct  290  PLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRM  349

Query  376  LSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED  435
            +  G+   I  + +          + Q ++ SAT+    ++  ++  +  P  +++    
Sbjct  350  IDMGFEGDIRTIFSYF------KGQRQTLLFSATMPK-KIQNFAKSALVKPVTINVGRAG  402

Query  436  SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGE  495
            +    V   V  V  +                                         K  
Sbjct  403  AASLDVIQEVEYVKEEA----------------------------------------KMV  422

Query  496  YAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERK  555
            Y +  +++      +IF   K D D + +Y + +G            V +HG +   ER 
Sbjct  423  YLLECLQKTPP-PVLIFAEKKADVDAIHEYLLLKG---------VEAVAIHGGKDQEERT  472

Query  556  QNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLA  615
            + +E F++G    L+ TDVA++G+D   + +VIN  +P+E +NYVHRIGR GR+   G+A
Sbjct  473  KAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIA  532

Query  616  ISLVAT-EKEKVWYHVCSSRGKGCYNT  641
             + +     E V   + +   +     
Sbjct  533  TTFINKACDESVLMDLKALLLEAKQKV  559


 Score = 98.7 bits (244),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 1/102 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F EM     I + +++     PT IQ + IP IL G D++  A TGSGKT  F++PV
Sbjct  180  IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV  239

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            I    E  K     K+ +           +     +     +
Sbjct  240  IMFCLEQEKRLPFSKR-EGPYGLIICPSRELARQTHGILEYY  280


>sp|Q6BME5|SUB2_DEBHA ATP-dependent RNA helicase SUB2 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=SUB2 PE=3 SV=2
Length=435

 Score = 289 bits (739),  Expect = 7e-89, Method: Composition-based stats.
 Identities = 106/437 (24%), Positives = 172/437 (39%), Gaps = 72/437 (16%)

Query  232  VLKNAELKFNFGEEEFKFPPKDGFV----------ALSKAPDGYIVKSQHSGNAQVTQTK  281
             L   EL    G+  F+ P +   V           L +A  G + K+     + + Q  
Sbjct  56   FLLKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSG-LGKTAVFVLSTLQQLD  114

Query  282  FLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG--  339
             +P     L++  +RELA Q  N   +F KY+  P ++  +  GG      L  L+N   
Sbjct  115  PVPGEISTLVICHTRELAYQIRNEYARFSKYM--PDVKTEVFYGGTPITRDLEKLKNKDT  172

Query  340  -VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
               IVV TPGRL  LV+   + L+ ++  V+DE D +L    +  + R    I + T   
Sbjct  173  CPHIVVATPGRLHALVTEKSIRLNNIKSFVIDECDKVLE---AVDMRRDVQDIFRNTPHQ  229

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDS-VPDTVHHVVVPVNPKTDRLWE  457
            K  QV++ SATL S +++ + +K M  P  + +  E       +    + ++ K      
Sbjct  230  K--QVMMFSATL-SQEIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQYYIKLDEKE-----  281

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
                                               K       +   + +Q IIF R+  
Sbjct  282  -----------------------------------KNRKLSDLLDSLEFNQVIIFVRSTQ  306

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
              + L +               F  + +H      ER +  + FK+ + R  + TDV  R
Sbjct  307  RANELNKLLC---------SSNFPSIAVHSGLPQEERIERYKSFKEFNKRICVSTDVFGR  357

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
            GIDI  +   IN  LP+E   Y+HR+GR GR    GLA+SLV+T+ ++       SR   
Sbjct  358  GIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLAVSLVSTKDDEEVLEKIQSRFDV  417

Query  638  CYNTRLKEDGGCTIWYN  654
                  +E    + + N
Sbjct  418  KITEFPEEGVDPSTYMN  434


 Score = 79.0 bits (193),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 44/103 (43%), Gaps = 9/103 (9%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F +  + PE+ +A+ +  +  P+++Q   IP  + G DVL  A++G GKT  F +  +
Sbjct  51   TGFRDFLLKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTL  110

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            Q +     D   G+     I        +      +  + F+ 
Sbjct  111  QQL-----DPVPGEISTLVICH----TRELAYQIRNEYARFSK  144


>sp|A6RW79|PRP5_BOTFB Pre-mRNA-processing ATP-dependent RNA helicase 
prp5 OS=Botryotinia fuckeliana (strain B05.10) OX=332648 
GN=prp5 PE=3 SV=1
Length=1151

 Score = 305 bits (782),  Expect = 8e-89, Method: Composition-based stats.
 Identities = 106/482 (22%), Positives = 189/482 (39%), Gaps = 89/482 (18%)

Query  213  GLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHS  272
            GL  +    +          ++   +                 + ++K   G  +     
Sbjct  560  GLDVKSLDVITKLGYERPTSIQMQAIPAIMS--------GRDVIGVAKTGSGKTIAFLLP  611

Query  273  GNAQVTQTKFLP--NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
                +   + L   + P  LI+ P+RELA Q     K F K +    LR +   GG   +
Sbjct  612  MFRHIRDQRPLKGSDGPIGLIMTPTRELATQIHKECKPFLKAMG---LRAVCAYGGAIIK  668

Query  331  DQLSVLENGVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRM  387
            DQ++ L+ G +I+V TPGR+ +L++       NL +V ++VLDEAD +   G+   + ++
Sbjct  669  DQIADLKRGAEIIVCTPGRMIELLAANSGRVTNLQRVTYVVLDEADRMFDMGFEPQVMKV  728

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVV-  446
             N I          Q I+ SAT+    +  L++K +  P  + + G   V   +  +V  
Sbjct  729  FNNI------RPNRQTILFSATMPRI-MDALAKKTLQSPVEIVVGGRSVVAPEITQIVEV  781

Query  447  -PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
                 K  RL E LG+ +   +D                                     
Sbjct  782  REEKEKFHRLLELLGELYNTDEDA------------------------------------  805

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
              + +IF   +   D+L +  +++G         + C+ +HG +   +R   ++ FK G 
Sbjct  806  --RTLIFVDRQEKADDLLKDLMRKG---------YPCMSIHGGKDQVDRDSTIDDFKAGV  854

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            V  +I T VAARG+D+  +  V+N   P+  ++YVHR GR GRA   G A++ +  E+E+
Sbjct  855  VPIMIATSVAARGLDVKQLKLVVNFDAPNHLEDYVHRAGRTGRAGNTGTAVTFITEEQEQ  914

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFD  685
                +  +  +                      L+E+ +       +V+   K     F 
Sbjct  915  YSVGIAKALEQSGQEV--------------PDRLNEMRKSYK---DKVKSGAKKESSGFR  957

Query  686  GK  687
            GK
Sbjct  958  GK  959


 Score = 107 bits (267),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 50/107 (47%), Gaps = 4/107 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  +S+ G+  +    + ++ +  PT IQ ++IP I+ G DV+  A+TGSGKT AF +P+
Sbjct  553  VQKWSQCGLDVKSLDVITKLGYERPTSIQMQAIPAIMSGRDVIGVAKTGSGKTIAFLLPM  612

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
             + +    +DQ+  K     I    +   +     +     F     
Sbjct  613  FRHI----RDQRPLKGSDGPIGLIMTPTRELATQIHKECKPFLKAMG  655


>sp|A6RY31|DHH1_BOTFB ATP-dependent RNA helicase dhh1 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=dhh1 PE=3 SV=1
Length=538

 Score = 292 bits (747),  Expect = 8e-89, Method: Composition-based stats.
 Identities = 110/494 (22%), Positives = 181/494 (37%), Gaps = 75/494 (15%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             +D  +  E+   +          ++   +               G   L++A +G   K
Sbjct  49   FEDFSIKRELLMGIFEMGYEKPSPIQEEAIPVALT----------GRDILARAKNG-TGK  97

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
            +       + +        + LI+ P+RELA QT    K   +++    +  ++  GG  
Sbjct  98   TAAFVIPALERINPKNTKVQCLILVPTRELALQTSQVCKTLGQHLG---INVMVTTGGTT  154

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
             RD +  L+  V I+VGTPGR+ DL      +LS+    V+DEAD LLS  ++  I ++ 
Sbjct  155  LRDDILRLQEPVHIIVGTPGRILDLAGKNVADLSECNMFVMDEADKLLSPEFTIVIEQLL  214

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
               P      K  Q+++ SAT     VK  S+K M  P  ++L  ++     +      V
Sbjct  215  QFHP------KDRQIMLFSATFP-MTVKDFSDKNMADPYEINLM-DELTLRGITQFYAFV  266

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
              K                                         K         + +++Q
Sbjct  267  EEKE----------------------------------------KVHCLNTLFSKLQINQ  286

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
            +IIFC +    + L +   + G         +SC   H       R +    F+ G  R 
Sbjct  287  SIIFCNSTNRVELLAKKITELG---------YSCFYSHARMIQANRNRVFHDFRNGVCRN  337

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            L+C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR   +GLAI+L++ E     Y
Sbjct  338  LVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLISWEDRFNLY  397

Query  629  HVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVE---PDIKVPVDEFD  685
            ++    G               + Y   + +     +      Q      D + P     
Sbjct  398  NIERELGTEIAPIPQIIPKNLYV-YETPENIPRPVSNFQTNTRQASGPGRDQQQPTQHSG  456

Query  686  GKVTYGQKRAAGGG  699
             + T GQ      G
Sbjct  457  NQRTGGQYNNYNNG  470


 Score = 101 bits (252),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 40/91 (44%), Gaps = 9/91 (10%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +  +  E+   + EM +  P+ IQ E+IP+ L G D+L  A+ G+GKT AF IP ++ 
Sbjct  49   FEDFSIKRELLMGIFEMGYEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALER  108

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
            +           K             +  + 
Sbjct  109  I---------NPKNTKVQCLILVPTRELALQ  130


>sp|Q5QYF8|RHLB_IDILO ATP-dependent RNA helicase RhlB OS=Idiomarina 
loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) OX=283942 
GN=rhlB PE=3 SV=1
Length=425

 Score = 288 bits (737),  Expect = 8e-89, Method: Composition-based stats.
 Identities = 110/447 (25%), Positives = 179/447 (40%), Gaps = 68/447 (15%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
              DL L  +I   + +        ++   L       +            ++   G  + 
Sbjct  11   FADLALHPKIQQAISSAGFEYCTPIQALSLPVALSNRDVA--------GQAQTGTGKTLA  62

Query  269  SQHSGNAQVTQ---TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
               +   ++ Q   ++   + P+ALI+ P+RELA Q  ++     ++     L+  +I G
Sbjct  63   FLLATFNRLMQNESSEKTESGPRALIMAPTRELAIQIAHDADALIEHCG---LKMGVIYG  119

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            G     Q   L    DI+VGT GRL D       +L  +  +VLDEAD +   G+ D I 
Sbjct  120  GEGYEGQKEQLAAQPDILVGTTGRLIDFYKQDLFSLKDIEVVVLDEADRMFDLGFIDDIR  179

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
             +  ++P    D  +   ++ SATL S+ V++L+ + M+ PT ++++        V    
Sbjct  180  YLLQKMP----DPSKRLNLLFSATL-SYRVQELAYEHMNAPTKLEVEPLQKTATRVT---  231

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
                                                 E      K  K    +  I+E  
Sbjct  232  -------------------------------------EELFYPSKPEKFPLLLTLIEEDW  254

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             D+AI+F  TK  C+ +  + +          ++     L GD    +R + LE F +G 
Sbjct  255  PDKAIVFANTKHGCEKVHGWLV---------ANEHRAGLLTGDVPQKKRLRILEDFAEGK  305

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            + FL+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G AISL   E   
Sbjct  306  LDFLVATDVAARGLHIPEVTHVYNFDLPDDCEDYVHRIGRTGRAGASGAAISLACEEYVY  365

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIW  652
                +    G     T+   D   +  
Sbjct  366  NLPAIEDYIGHTIPVTKYDGDALLSDL  392


 Score = 96.0 bits (237),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 57/352 (16%), Positives = 117/352 (33%), Gaps = 55/352 (16%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F+++ + P+I QA+    +   T IQA S+P+ L   DV   A+TG+GKT AF +   
Sbjct  9    TRFADLALHPKIQQAISSAGFEYCTPIQALSLPVALSNRDVAGQAQTGTGKTLAFLLATF  68

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHG  121
              + +    ++             +   +  +               +   +  + E  G
Sbjct  69   NRLMQNESSEKTE---SGPRALIMAPTRELAIQ--------------IAHDADALIEHCG  111

Query  122  CRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDN  181
             +   G++ G   YE                Q  + +GT                +  D 
Sbjct  112  LK--MGVIYGGEGYEGQKEQL--------AAQPDILVGTTG--------------RLIDF  147

Query  182  YGEE-FTMHDTIGCYLDIDKG--HVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAEL  238
            Y ++ F++ D     LD       + F  + + L      P    N         +  EL
Sbjct  148  YKQDLFSLKDIEVVVLDEADRMFDLGFIDDIRYLLQKMPDPSKRLNLLFSATLSYRVQEL  207

Query  239  KFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSREL  298
             +       K   +      ++  +     S+      +          KA++   ++  
Sbjct  208  AYEHMNAPTKLEVEPLQKTATRVTEELFYPSKPEKFPLLLTLIEEDWPDKAIVFANTK--  265

Query  299  AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                 +  ++   ++   + R  L+ G V  + +L +LE+     +D +V T
Sbjct  266  -----HGCEKVHGWLVANEHRAGLLTGDVPQKKRLRILEDFAEGKLDFLVAT  312


>sp|Q4IJH1|DBP3_GIBZE ATP-dependent RNA helicase DBP3 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=DBP3 PE=3 SV=1
Length=581

 Score = 293 bits (750),  Expect = 8e-89, Method: Composition-based stats.
 Identities = 103/381 (27%), Positives = 169/381 (44%), Gaps = 44/381 (12%)

Query  252  KDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKK  311
                + +++   G  +         ++  K      KA++V P+RELA QT    +Q   
Sbjct  198  GRDVIGVAETGSGKTMAFALPCVEAISALKHK--HTKAVVVSPTRELAMQTY---EQMAS  252

Query  312  YIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDE  371
                 +++ + + GG +  DQ ++L  G DI+V TPGRL D +S G ++LS   F VLDE
Sbjct  253  VAALNRMKCVCLYGGASKDDQRNLLNRGADIIVATPGRLKDFMSDGTVDLSHSAFAVLDE  312

Query  372  ADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL  431
            AD +L +G+ + I  + +  P      ++ Q ++ +AT     V+ L+   M  P  + +
Sbjct  313  ADRMLDKGFEEDIKMILSSCP----PREKRQTLMFTATWP-QSVQTLAATFMVSPVKIAI  367

Query  432  KGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
                               +T      L  +   +  V   +         E+  E  + 
Sbjct  368  GS--------------GGKETAGGAVELQANARISQSVEVLEPRGKEFRLLEVLKEHQQG  413

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
             K           K D+ ++FC  K +   +E +  ++G              +HGD + 
Sbjct  414  SK-----------KNDRILVFCLYKKEATRIENFLSRKG---------IRVGGIHGDLRQ  453

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
             +R ++LE FK G    L+ TDVAARG+DI  V  VINVT P   ++YVHRIGR GRA +
Sbjct  454  EQRTRSLEAFKSGQTPVLVATDVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGK  513

Query  612  MGLAISLVATEKEKVWYHVCS  632
             G AI+    E +     + +
Sbjct  514  TGQAITFFTVEDKSHSGSLVN  534


 Score = 83.6 bits (205),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 19/124 (15%)

Query  20   MDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKT  79
             ++  PT IQ+ S P  L G DV+  AETGSGKT AF++P ++ +           K K 
Sbjct  179  ANYKAPTPIQSASWPFTLSGRDVIGVAETGSGKTMAFALPCVEAIS--------ALKHKH  230

Query  80   TIKTGASVLNKWQMNPYDRGSAFAI--GSDGLCCQSREVKEWHG---------CRATKGL  128
            T     S   +  M  Y++ ++ A       +C      K+              AT G 
Sbjct  231  TKAVVVSPTRELAMQTYEQMASVAALNRMKCVCLYGGASKDDQRNLLNRGADIIVATPGR  290

Query  129  MKGK  132
            +K  
Sbjct  291  LKDF  294


>sp|Q9LFN6|RH56_ARATH DEAD-box ATP-dependent RNA helicase 56 OS=Arabidopsis 
thaliana OX=3702 GN=RH56 PE=1 SV=2
Length=427

 Score = 288 bits (737),  Expect = 9e-89, Method: Composition-based stats.
 Identities = 101/382 (26%), Positives = 163/382 (43%), Gaps = 58/382 (15%)

Query  254  GFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI  313
            G   + +A  G   K+     + + Q +  P    AL++  +RELA Q  N   +F  Y+
Sbjct  83   GMDVICQAKSGM-GKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYL  141

Query  314  DNPKLRELLIIGGVAARDQLSVLENG-VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
              P  +  +  GGV  +    +L+N    IVVGTPGR+  L     L+L  VR  +LDE 
Sbjct  142  --PDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDEC  199

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D +L    S  + R   +I ++T   K  QV++ SATL S +++ + +K M  P  + + 
Sbjct  200  DKMLE---SLDMRRDVQEIFKMTPHDK--QVMMFSATL-SKEIRPVCKKFMQDPMEIYV-  252

Query  433  GEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKIL  492
             +D    T+H +V                                     + + +  ++ 
Sbjct  253  -DDEAKLTLHGLV-------------------------------------QHYIKLSEME  274

Query  493  KGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPH  552
            K       +     +Q +IF ++      L +  ++           F  +C+H      
Sbjct  275  KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVE---------CNFPSICIHSGMSQE  325

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM  612
            ER    + FK+G  R L+ TD+  RGIDI  V  VIN  +PD    Y+HR+GR GR    
Sbjct  326  ERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTK  385

Query  613  GLAISLVATEKEKVWYHVCSSR  634
            GLAI+ VA+  +    +    R
Sbjct  386  GLAITFVASASDSEVLNQVQER  407


 Score = 80.6 bits (197),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 38/67 (57%), Gaps = 0/67 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F +  + PE+ +A+ +  +  P+++Q E IP  + G DV+  A++G GKT  F +  +
Sbjct  46   SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTL  105

Query  62   QIVYETL  68
            Q +  + 
Sbjct  106  QQIEPSP  112


>sp|Q56XG6|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15 OS=Arabidopsis 
thaliana OX=3702 GN=RH15 PE=1 SV=3
Length=427

 Score = 288 bits (737),  Expect = 9e-89, Method: Composition-based stats.
 Identities = 101/382 (26%), Positives = 163/382 (43%), Gaps = 58/382 (15%)

Query  254  GFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI  313
            G   + +A  G   K+     + + Q +  P    AL++  +RELA Q  N   +F  Y+
Sbjct  83   GMDVICQAKSGM-GKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYL  141

Query  314  DNPKLRELLIIGGVAARDQLSVLENG-VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
              P  +  +  GGV  +    +L+N    IVVGTPGR+  L     L+L  VR  +LDE 
Sbjct  142  --PDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDEC  199

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D +L    S  + R   +I ++T   K  QV++ SATL S +++ + +K M  P  + + 
Sbjct  200  DKMLE---SLDMRRDVQEIFKMTPHDK--QVMMFSATL-SKEIRPVCKKFMQDPMEIYV-  252

Query  433  GEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKIL  492
             +D    T+H +V                                     + + +  ++ 
Sbjct  253  -DDEAKLTLHGLV-------------------------------------QHYIKLSEME  274

Query  493  KGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPH  552
            K       +     +Q +IF ++      L +  ++           F  +C+H      
Sbjct  275  KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVE---------CNFPSICIHSGMSQE  325

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM  612
            ER    + FK+G  R L+ TD+  RGIDI  V  VIN  +PD    Y+HR+GR GR    
Sbjct  326  ERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTK  385

Query  613  GLAISLVATEKEKVWYHVCSSR  634
            GLAI+ VA+  +    +    R
Sbjct  386  GLAITFVASASDSEVLNQVQER  407


 Score = 80.6 bits (197),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 38/67 (57%), Gaps = 0/67 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F +  + PE+ +A+ +  +  P+++Q E IP  + G DV+  A++G GKT  F +  +
Sbjct  46   SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTL  105

Query  62   QIVYETL  68
            Q +  + 
Sbjct  106  QQIEPSP  112


>sp|A1CYG5|DBP5_NEOFI ATP-dependent RNA helicase dbp5 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp5 
PE=3 SV=1
Length=489

 Score = 290 bits (742),  Expect = 9e-89, Method: Composition-based stats.
 Identities = 116/519 (22%), Positives = 202/519 (39%), Gaps = 113/519 (22%)

Query  199  DKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVAL  258
                +   KN +DLGL   I   + N        ++   L                 V  
Sbjct  69   PNNPLYSVKNFEDLGLDPRILKGLSNMNFRKPSKIQERALPLLLNNPP------KNLVGQ  122

Query  259  SKAPDGYIVKSQHSGNAQVTQ-TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPK  317
            S++  G       +  ++V   T+ +   P+ALI+ P+RELA Q L  ++   +++D   
Sbjct  123  SQSGTGKTAAFVLNALSRVDLSTEQMQKTPQALILAPTRELARQILGVVQVMGQFVDG--  180

Query  318  LRELLIIGGVAARDQLSVLEN-GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL  376
                LIIG     D+ S  +     IVVGTPG + D++       ++++ LVLDEAD +L
Sbjct  181  ----LIIGAAVPTDRDSRPKRLECSIVVGTPGTVGDMIKRRTFIPNKLKVLVLDEADNML  236

Query  377  S-QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED  435
              QG  D   R+   +P      + +QV++ SAT     V + + K       + L+ E+
Sbjct  237  DQQGLGDQCIRVKALLP------RDIQVVLFSATFPEH-VHQYASKFAPNANEITLQHEE  289

Query  436  SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGE  495
               + +  + +      D+    +    + T                             
Sbjct  290  LTVEGIKQLYLDCADGEDKYKTLVQLYGLLT-----------------------------  320

Query  496  YAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERK  555
                      +  +IIF +T+     +E+    +G          + V L G+R P  R 
Sbjct  321  ----------VGSSIIFVQTRAAAQEIEKRMTAEG---------HTVVSLTGERDPSVRD  361

Query  556  QNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD-----------EKQNYVHRIG  604
              +++F++G+ + LI T+V ARGID+  V  VIN  +P+           + Q Y+HRIG
Sbjct  362  AIIDQFRRGEAKVLIATNVLARGIDVSTVSMVINYDIPELHQPSVPGRQADFQTYLHRIG  421

Query  605  RVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEE  664
            R GR  R+G++IS V+  +E                                ++L++I+ 
Sbjct  422  RTGRFGRVGVSISFVSNREE-------------------------------WEMLNQIQT  450

Query  665  HLNCTISQVE-PDIKVPVDEFDGKVTYGQKRAAGGGSYK  702
            + NC I +V+  D     D     +   +      G  +
Sbjct  451  YFNCEIQRVDTKDWDEVEDIIKKTIKNSRANPKFAGGKE  489


 Score = 87.5 bits (215),  Expect = 8e-17, Method: Composition-based stats.
 Identities = 24/116 (21%), Positives = 50/116 (43%), Gaps = 7/116 (6%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            +  F ++G+ P I + +  M++  P+ IQ  ++PL+L     +++  +++G+GKT AF +
Sbjct  76   VKNFEDLGLDPRILKGLSNMNFRKPSKIQERALPLLLNNPPKNLVGQSQSGTGKTAAFVL  135

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSR  114
              +  V  + +  Q     KT      +   +                DGL   + 
Sbjct  136  NALSRVDLSTEQMQ-----KTPQALILAPTRELARQILGVVQVMGQFVDGLIIGAA  186


>sp|A6R603|SUB2_AJECN ATP-dependent RNA helicase SUB2 OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=SUB2 PE=3 
SV=2
Length=442

 Score = 288 bits (738),  Expect = 9e-89, Method: Composition-based stats.
 Identities = 98/381 (26%), Positives = 163/381 (43%), Gaps = 61/381 (16%)

Query  256  VALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDN  315
              L +A  G + K+       + Q + +P     L++  +RELA Q  N   +F KY+  
Sbjct  98   DVLCQAKSG-LGKTAVFVLTTLHQLEPVPGECSILVMCHTRELAYQIKNEYARFSKYL--  154

Query  316  PKLRELLIIGGVAARDQLSVLENG---VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
            P ++  +  GG   +  + +L +      IVVGTPGRL+ LV   KL+L  ++  VLDE 
Sbjct  155  PDVKTAVFYGGTPMQKDIELLSSKDTYPSIVVGTPGRLNALVRDKKLSLRNIKAFVLDEC  214

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D +L       + R   +I + T   K  QV++ SATL S +V+ + +K M  P  V + 
Sbjct  215  DKMLD---QIDMRRDVQEIFRATPADK--QVMMFSATL-SQEVRPICKKFMRNPLEVYVD  268

Query  433  GEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKIL  492
             +  +                     L + +I+  +                        
Sbjct  269  DDTKL-----------------TLHGLLQYYIKLGESE----------------------  289

Query  493  KGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPH  552
            K       +   + +Q IIF ++      L++   +           F  + +H      
Sbjct  290  KNRKLNELLDSLEFNQVIIFVKSTQRASELDKLLRE---------CNFPSIAVHSGVSQE  340

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM  612
            ER +  + FK+ + R  + TDV  RGIDI  +   IN  LP +  +Y+HR+GR GR    
Sbjct  341  ERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTK  400

Query  613  GLAISLVATEKE-KVWYHVCS  632
            GLAIS V++E++ +V   +  
Sbjct  401  GLAISFVSSEQDQEVLKDIEK  421


 Score = 71.3 bits (173),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 32/63 (51%), Gaps = 0/63 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F +  +  E+ +A+ +  +  P+++Q   IP  +   DVL  A++G GKT  F +  +
Sbjct  59   TGFRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTL  118

Query  62   QIV  64
              +
Sbjct  119  HQL  121


>sp|A3GFI4|IF4A_PICST ATP-dependent RNA helicase eIF4A OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=TIF1 PE=3 SV=1
Length=397

 Score = 287 bits (734),  Expect = 9e-89, Method: Composition-based stats.
 Identities = 107/426 (25%), Positives = 183/426 (43%), Gaps = 71/426 (17%)

Query  228  FPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN------AQVTQ  279
            F    LK   ++  F +G E      +   + +++  D        +G       + + +
Sbjct  25   FDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQR  84

Query  280  TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
                  + +ALI+ P+RELA Q  N I     Y++   +     IGG + +D +    +G
Sbjct  85   IDENEKSTQALILAPTRELALQIKNVITSIGLYLN---VTVHASIGGTSMQDDIEAFRSG  141

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
            V +VVGTPGR+ D++        +V+  ++DEAD +LS G+ + I  +   +P+ T    
Sbjct  142  VQVVVGTPGRVFDMIERRYFKTEKVKMFIMDEADEMLSSGFKEQIYNIFRLLPETT----  197

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              QV++ SAT+   DV +++ K M+ P  + +K ++   + +    + V           
Sbjct  198  --QVVLLSATMP-QDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVE----------  244

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
                                         ++  K +          + QA+IFC T+   
Sbjct  245  -----------------------------LEDYKFDCLCDLYDSISVTQAVIFCNTRSKV  275

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            + L             K   F+   +H D    ER   ++ F+ G  R LI TD+ ARGI
Sbjct  276  EFLTTKL---------KAENFTVSAIHADLPQAERDTIMKEFRSGSSRILIATDLLARGI  326

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCY  639
            D+  V  VIN  LP  K+NY+HRIGR GR  R G+AI+ V      +   +     +  Y
Sbjct  327  DVQQVSLVINYDLPSNKENYIHRIGRGGRFGRKGVAINFVTERDVGMMREI-----EQFY  381

Query  640  NTRLKE  645
            +T+++E
Sbjct  382  STQIEE  387


 Score = 93.3 bits (230),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 25/132 (19%), Positives = 50/132 (38%), Gaps = 13/132 (10%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F ++ + P I + +    +  P+ IQ  +I  I  G DVL  A++G+GKT  F+I  +Q 
Sbjct  25   FDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQR  84

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGS----AFAIGSDGLCCQSREVKEW  119
            + E  K  Q             +   +  +   +  +       +        +    + 
Sbjct  85   IDENEKSTQ---------ALILAPTRELALQIKNVITSIGLYLNVTVHASIGGTSMQDDI  135

Query  120  HGCRATKGLMKG  131
               R+   ++ G
Sbjct  136  EAFRSGVQVVVG  147


>sp|Q54KG1|DDX41_DICDI Probable ATP-dependent RNA helicase ddx41 
OS=Dictyostelium discoideum OX=44689 GN=ddx41 PE=1 SV=1
Length=671

 Score = 295 bits (756),  Expect = 1e-88, Method: Composition-based stats.
 Identities = 110/482 (23%), Positives = 192/482 (40%), Gaps = 80/482 (17%)

Query  226  ALFPACVLKNAELKFNF--GEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFL  283
              F    +    +      G ++       G   +    D   +    SG   V     +
Sbjct  222  TTFKEMKIPKPVIDVLLEKGIKKPSPIQVQGLPVILSGRDMIGIAYTGSGKTLVFTLPMV  281

Query  284  P--------------NAPKALIVEPSRELAEQTLNNIKQFK----KYIDNPKLRELLIIG  325
                             P  LI+ PSRELA QT + +  F     K   +P+LR LL IG
Sbjct  282  LFALEEECKLPIIQGEGPFGLILCPSRELARQTYDLVNSFTNALHKNGGHPQLRTLLAIG  341

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            G+  R+Q  + + GV +++ TPGRL DL++  K+N    ++L LDEAD L+  G+ D I 
Sbjct  342  GIDLREQEHIFKKGVHMIIATPGRLLDLLNKKKINFKLCKYLGLDEADRLIDLGFEDDIR  401

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
             + +          + Q ++ SAT+    +++ +   +  P  V++    +    V   V
Sbjct  402  SVLDNF------TNQRQTLLFSATMPK-KIQEFARSALVLPVEVNVGRAGAANLNVTQEV  454

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
              V P+                                         K  Y +  +++  
Sbjct  455  EFVKPEA----------------------------------------KIVYLLECLQKTP  474

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
                +IFC  K D D++ +Y + +         Q   V +HGD+   ER+  ++ F++G 
Sbjct  475  P-PVLIFCENKKDVDDIYEYLLLK---------QVEAVSIHGDKSQDERESAIKAFREGK  524

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
               L+ TDVA++G+D   + +VIN  +P E +NY+HRIGR GR    G+A + +     +
Sbjct  525  KDVLVATDVASKGLDFPEIQHVINFDMPREIENYIHRIGRTGRRGNKGVATTFINKNNTE  584

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFD  685
                +           + K         ++ Q L ++++    T    + D   P +  D
Sbjct  585  ---SLLLDLKYLLIEAKQKVPPALLEIPDDNQYLQKLQDRNGNTGGGADDDDTKPCEYCD  641

Query  686  GK  687
            G+
Sbjct  642  GR  643


 Score = 94.4 bits (233),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 45/103 (44%), Gaps = 1/103 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F EM +   +   + E     P+ IQ + +P+IL G D++  A TGSGKT  F++P+
Sbjct  221  ITTFKEMKIPKPVIDVLLEKGIKKPSPIQVQGLPVILSGRDMIGIAYTGSGKTLVFTLPM  280

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
            +    E         +G+           +     YD  ++F 
Sbjct  281  VLFALEEECKL-PIIQGEGPFGLILCPSRELARQTYDLVNSFT  322


>sp|Q5Z6G5|RH35B_ORYSJ DEAD-box ATP-dependent RNA helicase 35B 
OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0697200 PE=3 
SV=1
Length=619

 Score = 294 bits (752),  Expect = 1e-88, Method: Composition-based stats.
 Identities = 121/513 (24%), Positives = 203/513 (40%), Gaps = 78/513 (15%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
            S++  DL L   I   ++ + +     ++   L                 + ++    G 
Sbjct  172  SRSFGDLRLPEPILRALRGKGIEKPTPIQVQGLPVALS--------GRDMIGIAFTGSGK  223

Query  266  IVKSQHSGNAQVTQTKFLPN-----APKALIVEPSRELAEQTLNNIKQFKKYI---DNPK  317
             +           Q + L        P  LIV PSRELA QT   I+ F   +     P+
Sbjct  224  TLVFVLPLIMAALQEEILMPIVPGEGPFGLIVCPSRELARQTHEVIEMFLAPLMEAGYPE  283

Query  318  LRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLS  377
            +R LL IGGV  R Q+ V++ GV IVV TPGRL DL+S  K+NL   R+L LDEAD L+ 
Sbjct  284  IRPLLCIGGVDMRTQMEVVKKGVHIVVATPGRLKDLLSKKKMNLDNCRYLTLDEADRLVD  343

Query  378  QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSV  437
             G+ D I  + +          + Q ++ SAT+    ++  ++  +  P  V++    + 
Sbjct  344  LGFEDDIREVFDHF------KAQRQTLLFSATMP-EKIQNFAKSALVKPIIVNVGRAGAA  396

Query  438  PDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYA  497
               V   V  V  +   +                                        Y 
Sbjct  397  NLDVIQEVEYVKEEARII----------------------------------------YL  416

Query  498  VRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQN  557
            +  +++      ++FC  K D D ++++ + +G            V +HG +   ERK  
Sbjct  417  LECLQKTPP-PVLVFCEHKADVDYIQEFLLLKG---------VEAVAIHGGKDDEERKDA  466

Query  558  LERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAIS  617
             + FK  +   L+ TDVA++G+DI  + +VIN  +P E +NYVHRIGR GR  + G+A +
Sbjct  467  FKSFKASEKDVLVATDVASKGLDIPDIQHVINYDMPAEIENYVHRIGRTGRRGKTGVATT  526

Query  618  LVATEK-EKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTI--SQVE  674
             +   + E     +     +                 ++   +++      C        
Sbjct  527  FINKNQTETTLLDLKQLLIESKQRLPPILADLDDPQEDDKVAIAQQSGVKGCAFCGGLGH  586

Query  675  PDIKVPVDEFDGKVTYGQKRAA--GGGSYKGHV  705
                 P  +    VT  + R+   GGG Y+G +
Sbjct  587  RIEACPKQQLQNSVTLARARSDYFGGGGYRGEI  619


 Score = 93.7 bits (231),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 23/101 (23%), Positives = 41/101 (41%), Gaps = 1/101 (1%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +F ++ +   I +A+       PT IQ + +P+ L G D++  A TGSGKT  F +P+I
Sbjct  173  RSFGDLRLPEPILRALRGKGIEKPTPIQVQGLPVALSGRDMIGIAFTGSGKTLVFVLPLI  232

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
                +          G+           +     ++    F
Sbjct  233  MAALQEE-ILMPIVPGEGPFGLIVCPSRELARQTHEVIEMF  272


>sp|A4QYM6|DRS1_PYRO7 ATP-dependent RNA helicase DRS1 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=DRS1 PE=3 SV=1
Length=790

 Score = 298 bits (763),  Expect = 1e-88, Method: Composition-based stats.
 Identities = 111/486 (23%), Positives = 187/486 (38%), Gaps = 75/486 (15%)

Query  197  DIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFV  256
            D +KG+  F            I   + +        +++  +                 V
Sbjct  249  DTNKGNASFQSMSLSRP----ILRGLTSVGFAKPTPIQSKTIPIAL--------MGKDVV  296

Query  257  ALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNP  316
              +    G           ++          + +I+ P+RELA Q      +   + D  
Sbjct  297  GGAVTGSGKTAAFVVPILERLLYRPKKVPTSRVVILAPTRELAIQCHAVATKLASHTD--  354

Query  317  KLRELLIIGGVAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGL  375
             ++  L +GG++ + Q S L    D+++ TPGR +D + ++    +  V  LVLDEAD +
Sbjct  355  -IKFCLAVGGLSLKVQESELRLRPDVIIATPGRFIDHMRNSASFAVDTVEILVLDEADRM  413

Query  376  LSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED  435
            L  G++D +N +   +P      K  Q ++ SAT+ S  V  L    ++ P  + +  + 
Sbjct  414  LEDGFADELNEILTTLP------KSRQTMLFSATMTS-SVDNLIRVGLNKPVRLMVDSQK  466

Query  436  SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGE  495
                T+    V + P  +                                       +  
Sbjct  467  KTVVTLTQEFVRLRPGREE-------------------------------------KRMG  489

Query  496  YAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERK  555
            Y V   K    ++ IIF R K    +    F   G          SC  LHG     +R 
Sbjct  490  YLVYLCKNLYTERVIIFFRQKKIAHHARIIFGLLG---------LSCAELHGSMSQIQRI  540

Query  556  QNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLA  615
            Q++E F+ G V FL+ TD+A+RG+DI GV  VIN   P   + YVHR+GR  RA R G A
Sbjct  541  QSVEAFRDGKVSFLLATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRSGTA  600

Query  616  ISLVATEKEKVWYHVCSS--RGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQV  673
            I+L A    KV      +        ++R+ +      W  +   + E+E+ +   + + 
Sbjct  601  ITLAAEPDRKVVKAAVKAGKAQGAKISSRIIDAADADSWQAK---IDELEDEVEAVMRE-  656

Query  674  EPDIKV  679
            E + KV
Sbjct  657  EKEEKV  662


 Score = 109 bits (273),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 6/106 (6%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            A+F  M +   I + +  + +  PT IQ+++IP+ L G DV+  A TGSGKT AF +P++
Sbjct  255  ASFQSMSLSRPILRGLTSVGFAKPTPIQSKTIPIALMGKDVVGGAVTGSGKTAAFVVPIL  314

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            + +    K      K  T+     +   +  +  +   +  A  +D
Sbjct  315  ERLLYRPK------KVPTSRVVILAPTRELAIQCHAVATKLASHTD  354


>sp|Q8L7S8|RH3_ARATH DEAD-box ATP-dependent RNA helicase 3, chloroplastic 
OS=Arabidopsis thaliana OX=3702 GN=RH3 PE=1 SV=2
Length=748

 Score = 297 bits (760),  Expect = 2e-88, Method: Composition-based stats.
 Identities = 129/505 (26%), Positives = 213/505 (42%), Gaps = 89/505 (18%)

Query  232  VLKNAELKFNFGEEEFKFPPK-DGFVALSKAPDGY---------IVKSQHSGNAQVTQTK  281
             L+   +   F  +     P   G   +++A  G          I+K         T  +
Sbjct  116  SLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFR  175

Query  282  FLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVD  341
                 PK L++ P+RELA+Q    IK+       P L  + + GGV+   Q S L  GVD
Sbjct  176  RSGRLPKFLVLAPTRELAKQVEKEIKE-----SAPYLSTVCVYGGVSYTIQQSALTRGVD  230

Query  342  IVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL  401
            +VVGTPGR+ DL+    L L +V +LVLDEAD +L+ G+ + +  +   +P       + 
Sbjct  231  VVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPT------KR  284

Query  402  QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG--EDSVPDTVHHVVVPVNPKTDRLWERL  459
            Q ++ SAT+ ++ VKKL+ K +  P  +DL G  ++ + + +    +     + R     
Sbjct  285  QSMLFSATMPTW-VKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRT----  339

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
                                           IL     V A    K  + I+F +TK D 
Sbjct  340  -------------------------------ILSDLITVYA----KGGKTIVFTQTKRDA  364

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            D +               +  +   LHGD   H+R++ L  F++G    L+ TDVA+RG+
Sbjct  365  DEVSLAL----------SNSIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGL  414

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCY  639
            DI  V  VI+  LP++ + +VHR GR GRA + G AI +  + +++    +   R  GC+
Sbjct  415  DIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLE--RDVGCH  472

Query  640  NTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFD--GKVTYGQKRAAG  697
               +              LL    + +  T++ V PD    +  F    +  Y +K    
Sbjct  473  FEFISP-------PTVGDLLESSADQVVATLNGVHPDS---IKFFSATAQKLYEEKGTDA  522

Query  698  GGSYKGHVDIL--APTVQELAALEK  720
              +   H+      P+ + L + EK
Sbjct  523  LAAALAHLSGFSQPPSSRSLLSHEK  547


 Score = 84.4 bits (207),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 60/160 (38%), Gaps = 10/160 (6%)

Query  5    SEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIV  64
            S++ +   + +++E+        IQ   +   L G D++  A+TG+GKT AF IP+I+ +
Sbjct  105  SKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRL  164

Query  65   YETLKDQQEGKK-GKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
             E   D    ++ G+       +   +            A     +C             
Sbjct  165  TEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYTIQQSA  224

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKF  163
             T+G+       +V     G  R+       SL LG  ++
Sbjct  225  LTRGV-------DVVVGTPG--RIIDLIEGRSLKLGEVEY  255


>sp|Q5ADL0|PRP5_CANAL Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) 
OX=237561 GN=PRP5 PE=3 SV=1
Length=884

 Score = 300 bits (768),  Expect = 2e-88, Method: Composition-based stats.
 Identities = 115/506 (23%), Positives = 201/506 (40%), Gaps = 103/506 (20%)

Query  244  EEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP--------------NAPKA  289
            + +F+ P      AL     G  V       +  T +  LP                P  
Sbjct  311  KLKFEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQDQQFSKDNQGPIG  370

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR  349
            LI+ P+RELA Q    I  F K  +N  LR     GG +  +Q++ L+ GV+I+VGTPGR
Sbjct  371  LILSPTRELALQIEKEILNFTKRNNN--LRVCCCYGGSSIENQINELKKGVEIIVGTPGR  428

Query  350  LDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            + DL++      LNL +  F+VLDEAD +   G+   +N++  QI          Q ++ 
Sbjct  429  VIDLLAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNKILTQI------RPDRQTVLF  482

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT     ++ L+++I+  P  + + G   V   +   VV      +   +   +   + 
Sbjct  483  SATFP-RKMETLAKQILTDPVVIIVGGISVVAPEIKQEVVLFETSAEEQDKYKQQRVEKL  541

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
             D+                                 EH   + ++F   + D D L    
Sbjct  542  HDILTNYQI---------------------------EHPDSKILVFTEKQNDADELVANL  574

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK--GDVRFLICTDVAARGIDIHGV  584
            +          +++  + +HG +   +RK  ++ F      +  LI T +AARG+D+  +
Sbjct  575  L---------SNKYPAIAIHGGKDQMDRKYAIKEFASMDSGINILIATSIAARGLDVRNL  625

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLK  644
              VIN   P+  ++YVHR+GR GRA   G AI+ V++ + K  +++  +           
Sbjct  626  GLVINFDPPNHMEDYVHRVGRTGRAGAKGNAITFVSSSQPKEVFNLVKA-----------  674

Query  645  EDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKG-  703
                                 L  + S ++P ++   ++F  KV  G+++ + G   KG 
Sbjct  675  ---------------------LKLSHSDIDPKLEEIANKFVTKVKAGKEKISSGFGGKGL  713

Query  704  ------HVDILAPTVQELAALEKEAQ  723
                    + L    Q     + + Q
Sbjct  714  DNLQEVRDNKLKLEKQRFGDQQPQRQ  739


 Score = 109 bits (271),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 59/378 (16%), Positives = 130/378 (34%), Gaps = 50/378 (13%)

Query  1    MAAFSEMGVMPEIAQAV-EEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
            +  +S + +   ++  + +++ +  P+ IQ++++P IL G DV+  A+TGSGKT ++ +P
Sbjct  292  ILKWSHLALPTNLSSVIHDKLKFEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLP  351

Query  60   VIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGL---CCQSREV  116
            +++ +     DQQ  K  +  I    S   +  +        F   ++ L   CC     
Sbjct  352  MLRHIQ----DQQFSKDNQGPIGLILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSS  407

Query  117  KEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHN  176
             E       KG+       E+     G   +      +   L   +  F       +  +
Sbjct  408  IENQINELKKGV-------EIIVGTPGRV-IDLLAANSGRVLNLKRCTFVVLDEADRMFD  459

Query  177  KQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNA  236
              F+    +          +  D+  V FS               +  Q L    V+   
Sbjct  460  LGFEPQVNKILTQ------IRPDRQTVLFSATF------PRKMETLAKQILTDPVVIIVG  507

Query  237  ELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSR  296
             +                F   ++  D Y  +     +  +T  +      K L+     
Sbjct  508  GISVV---APEIKQEVVLFETSAEEQDKYKQQRVEKLHDILTNYQIEHPDSKILVFT---  561

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN------GVDIVVGTPGRL  350
                +  N+  +    + + K   + I GG    D+   ++       G++I++ T    
Sbjct  562  ----EKQNDADELVANLLSNKYPAIAIHGGKDQMDRKYAIKEFASMDSGINILIAT----  613

Query  351  DDLVSTGKLNLSQVRFLV  368
               ++   L++  +  ++
Sbjct  614  --SIAARGLDVRNLGLVI  629


>sp|A5E3W5|SUB2_LODEL ATP-dependent RNA helicase SUB2 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=SUB2 PE=3 SV=1
Length=433

 Score = 288 bits (736),  Expect = 2e-88, Method: Composition-based stats.
 Identities = 105/437 (24%), Positives = 169/437 (39%), Gaps = 72/437 (16%)

Query  232  VLKNAELKFNFGEEEFKFPPKDGFV----------ALSKAPDGYIVKSQHSGNAQVTQTK  281
             L   EL    G+  F+ P +   V           L +A  G + K+     + + Q  
Sbjct  54   FLLKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSG-LGKTAVFVLSTLQQLD  112

Query  282  FLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG--  339
             +      L++  +RELA Q  N   +F KY+  P ++  +  GG   +  +  L+N   
Sbjct  113  PVAGEISTLVICHTRELAYQIRNEYARFSKYM--PDVKTEVFYGGTPVKRDIEKLKNKDT  170

Query  340  -VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
               IVV TPGRL  LV    + L+ V+  V+DE D +L    S  + R    I + T   
Sbjct  171  CPHIVVATPGRLHALVQEKAIRLNNVKSFVIDECDKVLE---SLDMRRDVQDIFRATPHQ  227

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDS-VPDTVHHVVVPVNPKTDRLWE  457
            K  QV++ SATL S D++ + +K M  P  + +  E       +    + +  K      
Sbjct  228  K--QVMMFSATL-SQDIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQYYIKLEEKE-----  279

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
                                               K       +   + +Q IIF ++  
Sbjct  280  -----------------------------------KNRKLSDLLDSLEFNQVIIFVKSTQ  304

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
              + L +               F  + +H      ER +  + FK+ + R  + TDV  R
Sbjct  305  RANELNKLLC---------ACNFPSIAVHSGLPQEERIERYKSFKEFNKRICVSTDVFGR  355

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
            GIDI  +   IN  LP+E   Y+HR+GR GR    GL IS V+T++++       SR   
Sbjct  356  GIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLGISFVSTKEDEEVLEKIQSRFDV  415

Query  638  CYNTRLKEDGGCTIWYN  654
                  +E    + + N
Sbjct  416  KITEFPEEGVDPSTYMN  432


 Score = 77.5 bits (189),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 44/103 (43%), Gaps = 9/103 (9%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F +  + PE+ +A+ +  +  P+++Q   IP  + G DVL  A++G GKT  F +  +
Sbjct  49   TGFRDFLLKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTL  108

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            Q +     D   G+     I        +      +  + F+ 
Sbjct  109  QQL-----DPVAGEISTLVICH----TRELAYQIRNEYARFSK  142


>sp|Q9NQI0|DDX4_HUMAN Probable ATP-dependent RNA helicase DDX4 
OS=Homo sapiens OX=9606 GN=DDX4 PE=1 SV=2
Length=724

 Score = 296 bits (758),  Expect = 2e-88, Method: Composition-based stats.
 Identities = 97/412 (24%), Positives = 163/412 (40%), Gaps = 69/412 (17%)

Query  252  KDGFVALSKAPDGYIVKSQHSGNA-----QVTQTKFLP-NAPKALIVEPSRELAEQTLNN  305
                +A ++   G          A      +T ++F     P+ +IV P+REL  Q    
Sbjct  325  GRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLE  384

Query  306  IKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVR  365
             ++F        +R ++I GG      +  +  G +I+  TPGRL D++   K+ L Q++
Sbjct  385  ARKFS---FGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIK  441

Query  366  FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH-  424
            +LVLDEAD +L  G+   + ++ +         ++ Q ++ SAT    ++++L+ + +  
Sbjct  442  YLVLDEADRMLDMGFGPEMKKLISC--PGMPSKEQRQTLMFSATFP-EEIQRLAAEFLKS  498

Query  425  FPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEM  484
               +V +         V   V+ V                                    
Sbjct  499  NYLFVAVGQVGGACRDVQQTVLQVG-----------------------------------  523

Query  485  WSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC  544
                 +  K E  V  ++    ++ ++F  TK   D +  +  Q+         + S   
Sbjct  524  -----QFSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQE---------KISTTS  569

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            +HGDR+  ER+Q L  F+ G    L+ T VAARG+DI  V +VIN  LP     YVHRIG
Sbjct  570  IHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIG  629

Query  605  RVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEM  656
            R GR    G AIS    E +       +   +               W  E+
Sbjct  630  RTGRCGNTGRAISFFDLESD-------NHLAQPLVKVLTDAQQDVPAWLEEI  674


 Score = 105 bits (263),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 25/106 (24%), Positives = 46/106 (43%), Gaps = 0/106 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E  +   +   + +  +   T +Q  SIP+IL G D++  A+TGSGKT AF +P+
Sbjct  287  ILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPI  346

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            +  +          K+ +       +   +     Y     F+ G+
Sbjct  347  LAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGT  392


>sp|Q7S5D9|DHH1_NEUCR ATP-dependent RNA helicase dhh1 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=drh-10 PE=3 SV=3
Length=569

 Score = 292 bits (747),  Expect = 2e-88, Method: Composition-based stats.
 Identities = 104/401 (26%), Positives = 164/401 (41%), Gaps = 61/401 (15%)

Query  254  GFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI  313
            G   L++A +G   K+       + +     +  + LI+ P+RELA QT    K   K++
Sbjct  82   GRDILARAKNG-TGKTAAFVIPALNKINPKVSKIQCLILVPTRELAMQTSQVCKTLGKHL  140

Query  314  DNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEAD  373
                +  ++  GG   RD +  L++ V IVVGTPGR+ DL      +LS+    ++DEAD
Sbjct  141  G---INVMVTTGGTGLRDDIVRLQDPVHIVVGTPGRILDLAGKQVADLSECPMFIMDEAD  197

Query  374  GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG  433
             LLSQ ++  I ++    P      K  QV++ SAT     VK  S+K M  P  ++L  
Sbjct  198  KLLSQEFTPVIEQLLQFHP------KDRQVMLFSATFP-LSVKDFSDKNMTSPYEINLM-  249

Query  434  EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK  493
            ++     +      V  K                                         K
Sbjct  250  DELTLRGITQYYAFVEEKQ----------------------------------------K  269

Query  494  GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
                     + +++Q+IIFC +    + L +   + G         +SC   H       
Sbjct  270  VHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELG---------YSCFYSHAKMAQQA  320

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
            R +    F+ G  R L+C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR   +G
Sbjct  321  RNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLG  380

Query  614  LAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYN  654
            LAI+L+  +     Y++    G          D    ++ N
Sbjct  381  LAINLINWDDRFNLYNIERDLGTEIQPIPQTIDKSLYVYEN  421


 Score = 94.0 bits (232),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 38/91 (42%), Gaps = 9/91 (10%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            + +     ++   + E  +  P+ IQ E+IP+ L G D+L  A+ G+GKT AF IP +  
Sbjct  47   WEDFIHDRDLLMGIFEAGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALNK  106

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
            +   +   Q                 +  M 
Sbjct  107  INPKVSKIQ---------CLILVPTRELAMQ  128


>sp|A1SZG4|RHLB_PSYIN ATP-dependent RNA helicase RhlB OS=Psychromonas 
ingrahamii (strain DSM 17664 / CCUG 51855 / 37) OX=357804 
GN=rhlB PE=3 SV=1
Length=418

 Score = 287 bits (734),  Expect = 2e-88, Method: Composition-based stats.
 Identities = 108/451 (24%), Positives = 172/451 (38%), Gaps = 73/451 (16%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
              DL L   +   + +Q       ++   L                    ++   G  + 
Sbjct  11   FADLPLEKSLISGLTSQGYEYCTPIQALSLPITL--------TGKDIAGQAQTGTGKTLA  62

Query  269  SQH------SGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
                       NAQ    +   N P+A+I+ P+RELA Q   +            LR  L
Sbjct  63   FLPAVFHHLLTNAQPENRR--KNQPRAIILAPTRELAIQIHKDAMVLA---SMSNLRLGL  117

Query  323  IIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD  382
              GG     Q + LE GVDI++GT GR  D V  G +++  ++ +VLDEAD +   G+  
Sbjct  118  AYGGEKVEIQRTKLEKGVDILIGTTGRTIDFVKQGVIDMGSIQSVVLDEADRMFDLGFIK  177

Query  383  FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH  442
             I  +  ++P+     K    ++ SATL S  V++L+ + M+ P  + ++ E      + 
Sbjct  178  DIRYLFRRMPEA----KSRLNMLFSATL-SHKVQELAFEHMNDPESIQIEPEVMTSVNIT  232

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
                                                    E         K    +  I+
Sbjct  233  ----------------------------------------EELFYPSNQDKILLLLSLIE  252

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
            E   D+AI+F  TK  C+ +  Y    G              L GD   ++R + L++F 
Sbjct  253  EDWPDKAIVFANTKHTCEKVWGYLAGDGLRTGL---------LTGDVPQNKRLKILQQFT  303

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             G++  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   GLAIS    +
Sbjct  304  DGEIDILVATDVAARGLHIPKVSHVFNFDLPDDCEDYVHRIGRTGRAGEKGLAISFACEK  363

Query  623  KEKVWYHVCSSRGKGCYNTRLKEDGGCTIWY  653
                   +          +   ++       
Sbjct  364  YVFNLPAIEEYIKHPIPCSEYDKNAMLDSLP  394


 Score = 107 bits (266),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 62/356 (17%), Positives = 107/356 (30%), Gaps = 62/356 (17%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F+++ +   +   +    +   T IQA S+P+ L G D+   A+TG+GKT AF   V 
Sbjct  9    TKFADLPLEKSLISGLTSQGYEYCTPIQALSLPITLTGKDIAGQAQTGTGKTLAFLPAVF  68

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD---GLCCQSREVKE  118
              +      Q E ++         +   +  +  +      A  S+   GL     E  E
Sbjct  69   HHLLTN--AQPENRRKNQPRAIILAPTRELAIQIHKDAMVLASMSNLRLGLAYG-GEKVE  125

Query  119  WHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQ  178
                +  KG+                           + +GT      F   G       
Sbjct  126  IQRTKLEKGV--------------------------DILIGTTGRTIDFVKQGV------  153

Query  179  FDNYGEEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFEIPPHMK---NQALFPACVLK  234
                     M       LD  +    F     KD+   F   P  K   N         K
Sbjct  154  -------IDMGSIQSVVLD--EADRMFDLGFIKDIRYLFRRMPEAKSRLNMLFSATLSHK  204

Query  235  NAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEP  294
              EL F    +      +   +      +     S       +          KA++   
Sbjct  205  VQELAFEHMNDPESIQIEPEVMTSVNITEELFYPSNQDKILLLLSLIEEDWPDKAIVFAN  264

Query  295  SRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
            ++       +  ++   Y+    LR  L+ G V    +L +L+      +DI+V T
Sbjct  265  TK-------HTCEKVWGYLAGDGLRTGLLTGDVPQNKRLKILQQFTDGEIDILVAT  313


>sp|A3LRW2|DBP3_PICST ATP-dependent RNA helicase DBP3 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DBP3 PE=3 SV=1
Length=526

 Score = 290 bits (743),  Expect = 2e-88, Method: Composition-based stats.
 Identities = 103/380 (27%), Positives = 165/380 (43%), Gaps = 60/380 (16%)

Query  256  VALSKAPDGYIVKS-QHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYID  314
            + +++   G        + N  +T  K   +    L + P+RELA Q  +N+        
Sbjct  157  IGVAETGSGKTFAFGVPAINNILTLGK---SGLSVLCISPTRELASQIYDNLVDL---TS  210

Query  315  NPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADG  374
            N  ++ + + GGV   DQ+  L+N  ++VV TPGRL DL+  G +NL  V +LVLDEAD 
Sbjct  211  NTNVKCVCVYGGVPKHDQVKNLKN-ANVVVATPGRLLDLIEDGAVNLGTVDYLVLDEADR  269

Query  375  LLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE  434
            +L  G+ D I  +        +  +  Q ++ +AT    +V+KL+   M+ P  V +   
Sbjct  270  MLETGFEDAIKAIIG-----GTKKENRQTLMFTATWP-QEVRKLASTFMNQPVKVSIGDR  323

Query  435  DS--VPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKIL  492
            D       +  +V  + P                                    +  K L
Sbjct  324  DELAANKRITQIVEVIEP-----------------------------------FDKEKKL  348

Query  493  KGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPH  552
             G          K D+ +IF   K +   +E    +         + ++   +HGD    
Sbjct  349  LGLLRQYQSGSKKNDKVLIFALYKKEATRIEGLLRR---------NSYNVAAIHGDLSQQ  399

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM  612
            +R   L  FKKG+   L+ TDVAARG+DI  V  VIN+T P   ++YVHRIGR GRA + 
Sbjct  400  QRTNALNSFKKGESSLLLATDVAARGLDIPNVKVVINLTFPLTVEDYVHRIGRTGRAGQT  459

Query  613  GLAISLVATEKEKVWYHVCS  632
            G A +L    ++ +   + +
Sbjct  460  GTAHTLFTEHEKHLSGALMN  479


 Score = 94.0 bits (232),  Expect = 8e-19, Method: Composition-based stats.
 Identities = 36/139 (26%), Positives = 60/139 (43%), Gaps = 20/139 (14%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F ++ +  +I+  V +  +  PT IQ+ + P +L G DV+  AETGSGKT AF +P 
Sbjct  117  LLSFDQIQLNSKISAVVNK--FPTPTPIQSVAWPYLLSGKDVIGVAETGSGKTFAFGVPA  174

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC---------  111
            I  +         GK G + +    S   +     YD        ++  C          
Sbjct  175  INNIL------TLGKSGLSVLC--ISPTRELASQIYDNLVDLTSNTNVKCVCVYGGVPKH  226

Query  112  -QSREVKEWHGCRATKGLM  129
             Q + +K  +   AT G +
Sbjct  227  DQVKNLKNANVVVATPGRL  245


>sp|P0CQ98|PRP5_CRYNJ Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Cryptococcus neoformans var. neoformans serotype 
D (strain JEC21 / ATCC MYA-565) OX=214684 GN=PRP5 PE=3 SV=1
Length=1072

 Score = 303 bits (776),  Expect = 2e-88, Method: Composition-based stats.
 Identities = 106/464 (23%), Positives = 189/464 (41%), Gaps = 94/464 (20%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN--APKALIVEPSRELAEQTLN  304
                     + ++K   G  V         V   + +     P A+++ P+RELA Q   
Sbjct  435  PAIMSGRDVIGIAKTGSGKTVAFLLPMLRHVRDQRPVSGSEGPIAVVMSPTRELASQIYK  494

Query  305  NIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQV  364
              + F K ++   +R    +GG +  + ++ ++ G ++V+ TPGR+ DL++     ++ V
Sbjct  495  ECQPFLKVLN---IRASCCVGGSSISEDIAAMKKGAEVVICTPGRMIDLLTANNGRVTNV  551

Query  365  R---FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEK  421
            R   ++V+DEAD +   G+   + ++ N +          Q ++ SAT     ++ L+ +
Sbjct  552  RRTTYIVMDEADRMFDMGFEPQVMKIINNV------RPSAQKVLFSATFPKT-MESLARR  604

Query  422  IMHFPTWVDLKGEDSVPDTVHHVVV--PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGA  479
            I+  P  + + G   V   +   V     + K  RL E LG+      D           
Sbjct  605  ILVKPLEITVGGRSVVAPEIDQRVEVRDGDTKFTRLLEILGEMGEEHKDEDDF-------  657

Query  480  NSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQ  539
                                        + +IF   +   D+L +  +Q+G         
Sbjct  658  ----------------------------RTLIFVDRQESADDLFRELLQRG---------  680

Query  540  FSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNY  599
            + C  LHG ++  +R + ++ FK GDV  ++ T VAARG+D+  +  VIN   P+  ++Y
Sbjct  681  YVCASLHGGKEQVDRDEAIKNFKNGDVPIIVATSVAARGLDVKELKLVINYDAPNHMEDY  740

Query  600  VHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLL  659
            VHR GR GRA   G  I+ +  E+E+    +  +                          
Sbjct  741  VHRAGRTGRAGNKGTCITFITPEQERFSVDIVRA--------------------------  774

Query  660  SEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKG  703
                  L  + + +  D+K   D F GK+  G+ RAAG G Y G
Sbjct  775  ------LEASKAFIPDDLKKMSDSFLGKIKSGKARAAGSG-YSG  811


 Score = 106 bits (265),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 63/375 (17%), Positives = 119/375 (32%), Gaps = 54/375 (14%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  +   G+       ++   W  PT IQA++IP I+ G DV+  A+TGSGKT AF +P+
Sbjct  402  VRNWGAFGLPQGCLDVIKHQGWETPTSIQAQAIPAIMSGRDVIGIAKTGSGKTVAFLLPM  461

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG---SDGLCCQSREVK  117
            ++ V    +DQ+     +  I    S   +     Y     F          C     + 
Sbjct  462  LRHV----RDQRPVSGSEGPIAVVMSPTRELASQIYKECQPFLKVLNIRASCCVGGSSIS  517

Query  118  EWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNK  177
            E         + KG    EV     G   +   T          +  +       +  + 
Sbjct  518  ED-----IAAMKKGA---EVVICTPGRM-IDLLTANNGRVTNVRRTTYIVMDEADRMFDM  568

Query  178  QFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAE  237
             F+    +   +      +      V FS          +    +  + L          
Sbjct  569  GFEPQVMKIINN------VRPSAQKVLFSATF------PKTMESLARRILVKP-------  609

Query  238  LKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRE  297
            L+   G      P  D  V +      +          ++ +     +  + LI    +E
Sbjct  610  LEITVGGRSVVAPEIDQRVEVRDGDTKFT--RLLEILGEMGEEHKDEDDFRTLIFVDRQE  667

Query  298  LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGTPGRLDDL  353
             A+     + Q              + GG    D+   ++N     V I+V T       
Sbjct  668  SADDLFRELLQ-------RGYVCASLHGGKEQVDRDEAIKNFKNGDVPIIVAT------S  714

Query  354  VSTGKLNLSQVRFLV  368
            V+   L++ +++ ++
Sbjct  715  VAARGLDVKELKLVI  729


>sp|P0CQ99|PRP5_CRYNB Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Cryptococcus neoformans var. neoformans serotype 
D (strain B-3501A) OX=283643 GN=PRP5 PE=3 SV=1
Length=1072

 Score = 303 bits (776),  Expect = 2e-88, Method: Composition-based stats.
 Identities = 106/464 (23%), Positives = 189/464 (41%), Gaps = 94/464 (20%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN--APKALIVEPSRELAEQTLN  304
                     + ++K   G  V         V   + +     P A+++ P+RELA Q   
Sbjct  435  PAIMSGRDVIGIAKTGSGKTVAFLLPMLRHVRDQRPVSGSEGPIAVVMSPTRELASQIYK  494

Query  305  NIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQV  364
              + F K ++   +R    +GG +  + ++ ++ G ++V+ TPGR+ DL++     ++ V
Sbjct  495  ECQPFLKVLN---IRASCCVGGSSISEDIAAMKKGAEVVICTPGRMIDLLTANNGRVTNV  551

Query  365  R---FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEK  421
            R   ++V+DEAD +   G+   + ++ N +          Q ++ SAT     ++ L+ +
Sbjct  552  RRTTYIVMDEADRMFDMGFEPQVMKIINNV------RPSAQKVLFSATFPKT-MESLARR  604

Query  422  IMHFPTWVDLKGEDSVPDTVHHVVV--PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGA  479
            I+  P  + + G   V   +   V     + K  RL E LG+      D           
Sbjct  605  ILVKPLEITVGGRSVVAPEIDQRVEVRDGDTKFTRLLEILGEMGEEHKDEDDF-------  657

Query  480  NSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQ  539
                                        + +IF   +   D+L +  +Q+G         
Sbjct  658  ----------------------------RTLIFVDRQESADDLFRELLQRG---------  680

Query  540  FSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNY  599
            + C  LHG ++  +R + ++ FK GDV  ++ T VAARG+D+  +  VIN   P+  ++Y
Sbjct  681  YVCASLHGGKEQVDRDEAIKNFKNGDVPIIVATSVAARGLDVKELKLVINYDAPNHMEDY  740

Query  600  VHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLL  659
            VHR GR GRA   G  I+ +  E+E+    +  +                          
Sbjct  741  VHRAGRTGRAGNKGTCITFITPEQERFSVDIVRA--------------------------  774

Query  660  SEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKG  703
                  L  + + +  D+K   D F GK+  G+ RAAG G Y G
Sbjct  775  ------LEASKAFIPDDLKKMSDSFLGKIKSGKARAAGSG-YSG  811


 Score = 106 bits (265),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 63/375 (17%), Positives = 119/375 (32%), Gaps = 54/375 (14%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  +   G+       ++   W  PT IQA++IP I+ G DV+  A+TGSGKT AF +P+
Sbjct  402  VRNWGAFGLPQGCLDVIKHQGWETPTSIQAQAIPAIMSGRDVIGIAKTGSGKTVAFLLPM  461

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG---SDGLCCQSREVK  117
            ++ V    +DQ+     +  I    S   +     Y     F          C     + 
Sbjct  462  LRHV----RDQRPVSGSEGPIAVVMSPTRELASQIYKECQPFLKVLNIRASCCVGGSSIS  517

Query  118  EWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNK  177
            E         + KG    EV     G   +   T          +  +       +  + 
Sbjct  518  ED-----IAAMKKGA---EVVICTPGRM-IDLLTANNGRVTNVRRTTYIVMDEADRMFDM  568

Query  178  QFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAE  237
             F+    +   +      +      V FS          +    +  + L          
Sbjct  569  GFEPQVMKIINN------VRPSAQKVLFSATF------PKTMESLARRILVKP-------  609

Query  238  LKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRE  297
            L+   G      P  D  V +      +          ++ +     +  + LI    +E
Sbjct  610  LEITVGGRSVVAPEIDQRVEVRDGDTKFT--RLLEILGEMGEEHKDEDDFRTLIFVDRQE  667

Query  298  LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGTPGRLDDL  353
             A+     + Q              + GG    D+   ++N     V I+V T       
Sbjct  668  SADDLFRELLQ-------RGYVCASLHGGKEQVDRDEAIKNFKNGDVPIIVAT------S  714

Query  354  VSTGKLNLSQVRFLV  368
            V+   L++ +++ ++
Sbjct  715  VAARGLDVKELKLVI  729


>sp|Q4P9P3|DRS1_USTMA ATP-dependent RNA helicase DRS1 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=DRS1 PE=3 SV=1
Length=932

 Score = 300 bits (769),  Expect = 2e-88, Method: Composition-based stats.
 Identities = 99/473 (21%), Positives = 186/473 (39%), Gaps = 35/473 (7%)

Query  218  IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQV  277
            +   + + +      +++  +      +        G V  S     +++ +      + 
Sbjct  344  VLRALSSLSFHKPTPIQSRTIPIALAGK----DIVAGAVTGSGKTAAFMIPTIERLTWRA  399

Query  278  TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE  337
                      + LI+ P+RELA Q  +  K   K+ D   +R  L +GG++ + Q + L+
Sbjct  400  KTRTPHEAKSRVLILAPTRELAIQCYSVGKSIAKFTD---IRFCLCVGGLSVKSQEAELK  456

Query  338  NGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTS  396
               ++V+ TPGRL D V ++    L  +  LV+DEAD +L  G++D +N +    P+   
Sbjct  457  LRPEVVIATPGRLIDHVRNSASFTLDDIEILVMDEADRMLEDGFADELNEIVKSCPKGA-  515

Query  397  DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLW  456
                 Q ++ SAT+   DV++L    +  P  + +  + +    +    V V        
Sbjct  516  ----RQTMLFSATMTD-DVEQLVRLSLKRPVRLFVDPKRTTAKKLIQEFVRVRGTGTGGV  570

Query  457  ERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTK  516
                      D      +    +   +         +    +         Q +IF R+K
Sbjct  571  AGADGLSGIQDQPATWISGGRKSEDAQ---------RPALLLSLCTRTFTSQTMIFVRSK  621

Query  517  IDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAA  576
                 L+  F   G          S   LHGD    +R   L  F+ G   FL+ TD+A+
Sbjct  622  KLAHQLKIVFGLLG---------LSAGELHGDLSQEQRIDALTDFRDGKTDFLLATDLAS  672

Query  577  RGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGK  636
            RG+DI GV  VIN  +P + + Y+HR+GR  RA R G A++LV     ++          
Sbjct  673  RGLDIKGVQTVINYDMPGQFEAYLHRVGRTARAGRNGRAVTLVGEADRRMLKLAIKKSSA  732

Query  637  GCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVT  689
                 R+          +  + L  ++  ++  + + + +  + + E + K  
Sbjct  733  EQIKHRIIPSAVAA---HMCETLERLKPEVDAVLREEKEEKALRIAEMELKKG  782


 Score = 103 bits (256),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 32/120 (27%), Positives = 55/120 (46%), Gaps = 5/120 (4%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            ++F    +   + +A+  + +  PT IQ+ +IP+ L G D++  A TGSGKT AF IP I
Sbjct  333  SSFGAFDLSRPVLRALSSLSFHKPTPIQSRTIPIALAGKDIVAGAVTGSGKTAAFMIPTI  392

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD---GLCCQSREVKE  118
            + +    K +   +     +    +   +  +  Y  G + A  +D    LC     VK 
Sbjct  393  ERLTWRAKTRTPHEAKSRVL--ILAPTRELAIQCYSVGKSIAKFTDIRFCLCVGGLSVKS  450


>sp|Q10MH8|RH24_ORYSJ DEAD-box ATP-dependent RNA helicase 24 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os03g0308500 PE=2 
SV=1
Length=770

 Score = 297 bits (760),  Expect = 3e-88, Method: Composition-based stats.
 Identities = 104/428 (24%), Positives = 169/428 (39%), Gaps = 68/428 (16%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K+  D G   ++   +  Q       ++   L                 + ++K   G  
Sbjct  219  KSFADCGFPVQLMNAIAKQGYEKPTTIQCQALPIVLS--------GRDIIGIAKTGSGKT  270

Query  267  VKSQHSGNAQVTQTKFLPN--APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
                      +     L     P  ++  P+RELA Q     K+F K  +   LR   + 
Sbjct  271  AAFVLPMIVHIMDQPELEKEEGPIGVVCAPTRELAHQIYLEAKKFAKPYN---LRVAAVY  327

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GGV+  DQ   L+ G +IV+ TPGRL DL+    L + +  +LVLDEAD +   G+   I
Sbjct  328  GGVSKFDQFKELKAGCEIVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQI  387

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
              +  QI          Q ++ SAT+  + V++L+ +I+  P  V +    S  + +  V
Sbjct  388  RSIVGQI------RPDRQTLLFSATMP-YKVERLAREILTDPIRVTVGQVGSANEDIKQV  440

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
            V  +    +++   L K     DD                                    
Sbjct  441  VNVLPSDAEKMPWLLEKLPGMIDDGD----------------------------------  466

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
                 ++F   K   D +E    Q+G         F    LHGD+    R + L++FK G
Sbjct  467  ----VLVFAAKKARVDEIESQLNQRG---------FRIAALHGDKDQASRMETLQKFKSG  513

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAE-RMGLAISLVATEK  623
                L+ TDVAARG+DI  +  V+N  +  E   ++HRIGR GRA  + G A +L+  ++
Sbjct  514  VYHVLVATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKE  573

Query  624  EKVWYHVC  631
             +    + 
Sbjct  574  VRFAGELV  581


 Score = 115 bits (288),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 30/104 (29%), Positives = 54/104 (52%), Gaps = 4/104 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F++ G   ++  A+ +  +  PT IQ +++P++L G D++  A+TGSGKT AF +P+
Sbjct  218  IKSFADCGFPVQLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPM  277

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            I  +     DQ E +K +  I    +   +     Y     FA 
Sbjct  278  IVHIM----DQPELEKEEGPIGVVCAPTRELAHQIYLEAKKFAK  317


>sp|Q4PFD9|PRP5_USTMA Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 
GN=PRP5 PE=3 SV=1
Length=1156

 Score = 304 bits (778),  Expect = 3e-88, Method: Composition-based stats.
 Identities = 100/432 (23%), Positives = 174/432 (40%), Gaps = 74/432 (17%)

Query  242  FGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN-----------APKAL  290
             G             A+    D   V    SG           +            P  +
Sbjct  494  LGYSAPTPIQSQAMPAIMSGRDIIGVAKTGSGKTMAFLLPMFRHIKDQRPVEPSEGPVGI  553

Query  291  IVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRL  350
            I+ P+RELA Q    ++ F K +    LR   + GG    +Q++ ++   DIVV TPGRL
Sbjct  554  IMTPTRELAVQIYREMRPFIKALG---LRAACVYGGAPISEQIAEMKKTADIVVATPGRL  610

Query  351  DDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
             DL++       NL +V +LVLDEAD +   G+   + ++ N I          Q ++ S
Sbjct  611  IDLLTANSGRVTNLYRVTYLVLDEADRMFDMGFEPQVMKILNNI------RPDRQTVLFS  664

Query  408  ATLHSFDVKKLSEKIMHF-PTWVDLKGEDSVPDTVHHVVV--PVNPKTDRLWERLGKSHI  464
            AT     ++ L+ K++   P  + + G   V   +  +V     + K  RL E LG+ + 
Sbjct  665  ATFPKQ-MESLARKVLKNKPLEITVGGRSVVAAEIEQIVEVRSEDTKFHRLLEILGELYN  723

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
            R  D                                       + +IF   +   D+L +
Sbjct  724  REKDA--------------------------------------RTLIFVDRQEAADDLLK  745

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
              I++G         +  + LHG +   +R + +  FK G+V  +  T VAARG+D+  +
Sbjct  746  DLIRKG---------YVTMSLHGGKDQVDRDETISDFKAGNVPIVTATSVAARGLDVKQL  796

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLK  644
              VIN  +P+  ++YVHR GR GRA + G  I+ +  E+++    + ++      +   +
Sbjct  797  KLVINYDVPNHMEDYVHRAGRTGRAGQKGTCITFITPEQDRYARDIIAALKASAAHVPPE  856

Query  645  EDGGCTIWYNEM  656
             +     +  ++
Sbjct  857  LEAMAASFKEKL  868


 Score = 108 bits (270),  Expect = 7e-23, Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 50/96 (52%), Gaps = 4/96 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  +S  G+       ++ + +  PT IQ++++P I+ G D++  A+TGSGKT AF +P+
Sbjct  475  LTKWSHCGLPASCLDVIKRLGYSAPTPIQSQAMPAIMSGRDIIGVAKTGSGKTMAFLLPM  534

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
             + +    KDQ+  +  +  +    +   +  +  Y
Sbjct  535  FRHI----KDQRPVEPSEGPVGIIMTPTRELAVQIY  566


>sp|O13792|SUB2_SCHPO ATP-dependent RNA helicase uap56 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=uap56 
PE=1 SV=3
Length=434

 Score = 287 bits (734),  Expect = 3e-88, Method: Composition-based stats.
 Identities = 101/405 (25%), Positives = 166/405 (41%), Gaps = 63/405 (16%)

Query  254  GFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI  313
            G   L +A  G   K+     + + Q + +      L++  +RELA Q  N   +F KY+
Sbjct  88   GTDVLCQAKSGM-GKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYL  146

Query  314  DNPKLRELLIIGGVAARDQLSVLENG---VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLD  370
              P +R  +  GG+  +  +   ++      IVV TPGRL+ LV    L ++ V+  VLD
Sbjct  147  --PDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLD  204

Query  371  EADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVD  430
            E D LL    S  + R   ++ + T   K  QV++ SATL S +++ + +K M  P  + 
Sbjct  205  ECDKLLE---SVDMRRDIQEVFRATPPQK--QVMMFSATL-SNEIRPICKKFMQNPLEIY  258

Query  431  LKGEDS-VPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAI  489
            +  E       +    V +  K                                      
Sbjct  259  VDDETKLTLHGLQQHYVKLEEKA-------------------------------------  281

Query  490  KILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDR  549
               K       +   + +Q +IF ++    + L++   +           F  +C+HG  
Sbjct  282  ---KNRKINDLLDSLEFNQVVIFVKSVSRANELDRLLRE---------CNFPSICIHGGL  329

Query  550  KPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA  609
               ER +  + FK  D R  + TDV  RGIDI  V  VIN  +PD   +Y+HR+GR GR 
Sbjct  330  PQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRF  389

Query  610  ERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYN  654
               GLAI+  ++E++         R +    T L ++     + N
Sbjct  390  GTKGLAITFSSSEEDSQILDKIQERFE-VNITELPDEIDVGSYMN  433


 Score = 79.4 bits (194),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 35/63 (56%), Gaps = 0/63 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F +  + PE+ +A+ +  +  P+++Q   IP  + G DVL  A++G GKT  F +  +
Sbjct  51   TGFRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTL  110

Query  62   QIV  64
            Q +
Sbjct  111  QQI  113


>sp|A6RJA2|PRP28_BOTFB Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Botryotinia fuckeliana (strain B05.10) OX=332648 
GN=prp28 PE=3 SV=1
Length=783

 Score = 297 bits (760),  Expect = 3e-88, Method: Composition-based stats.
 Identities = 96/458 (21%), Positives = 173/458 (38%), Gaps = 89/458 (19%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            +N  +  L   +   +          ++ A +                 + ++    G  
Sbjct  380  RNWSESKLPKRLLDVIHQVGYDEPSAVQRAAIPIAL--------QARDLIGVAVTGSGKT  431

Query  267  VKSQHSGNAQVTQTKFLP-----NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLREL  321
                      +++   L      + P A+I+ P+RELA+Q     K+F   +       +
Sbjct  432  AAFLLPLLVYISELPPLNEFTKNDGPYAIILAPTRELAQQIEVEAKKFATPLG---FTCV  488

Query  322  LIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYS  381
             I+GG +  +Q   L NG +I++ TPGRL D +    L L Q  ++++DEAD ++  G+ 
Sbjct  489  SIVGGHSLEEQSYNLRNGAEIIIATPGRLVDCIERRVLVLGQCCYIIMDEADRMIDLGFE  548

Query  382  DFINRMHNQIP-------------------QVTSDGKRLQVIVCSATLHSFDVKKLSEKI  422
            + +N++ + +P                    +    +  Q ++ +AT+    V+K+++K 
Sbjct  549  ESVNKILDALPVSNEKPDTDDAEDAQAMSRHLGGKDRYRQTMMYTATMPPA-VEKIAKKY  607

Query  423  MHFPTWVDLKGEDSVPDTVHHVVVPV---NPKTDRLWERLGKSHIRTDDVHAKDNTRPGA  479
            +  P  V +       +TV   V  V   + +  RL E L                    
Sbjct  608  LRRPAIVTIGNIGEAVETVEQRVEFVAGEDKRKKRLNEILASGEFAPP------------  655

Query  480  NSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQ  539
                                          I+F   K +CD + +     G         
Sbjct  656  -----------------------------IIVFVNIKRNCDAVARDIKHMG---------  677

Query  540  FSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNY  599
            F+ V LHG +   +R+  L   + G    L+ TD+A RGID+  V  V+N  +    ++Y
Sbjct  678  FTSVTLHGSKTQEQREAALASVRSGATNVLVATDLAGRGIDVPDVSLVVNFNMATNIESY  737

Query  600  VHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
             HRIGR GRA + G+AI+ +  E     Y +     K 
Sbjct  738  THRIGRTGRAGKSGVAITFLGNEDSDTMYDLKQMLTKS  775


 Score = 102 bits (255),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 45/111 (41%), Gaps = 1/111 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M  +SE  +   +   + ++ +  P+ +Q  +IP+ L   D++  A TGSGKT AF +P+
Sbjct  379  MRNWSESKLPKRLLDVIHQVGYDEPSAVQRAAIPIALQARDLIGVAVTGSGKTAAFLLPL  438

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
            +  + E L    E  K         +   +           FA      C 
Sbjct  439  LVYISE-LPPLNEFTKNDGPYAIILAPTRELAQQIEVEAKKFATPLGFTCV  488


>sp|Q2UH00|PRP28_ASPOR Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) 
OX=510516 GN=prp28 PE=3 SV=1
Length=803

 Score = 297 bits (761),  Expect = 3e-88, Method: Composition-based stats.
 Identities = 96/380 (25%), Positives = 164/380 (43%), Gaps = 70/380 (18%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P A+++ P+RELA+Q     K   K+ +      + I+GG +  +Q   L NG +I++
Sbjct  444  DGPYAIVLAPTRELAQQIEIEAK---KFTEPLGFNVVSIVGGHSFEEQAYSLRNGAEIII  500

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP------------  392
             TPGRL D +    L LSQ  ++++DEAD ++  G+ + +N++ + +P            
Sbjct  501  ATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEKPDSEEAE  560

Query  393  -------QVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
                    + +  +  Q ++ +AT+ +  V++++ K +  P  V +       DTV   V
Sbjct  561  NSMAMSQHIGTKDRYRQTMMYTATMPTA-VERIARKYLRRPAIVTIGSAGEAVDTVEQRV  619

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
              +  +  R          R  D+ +    RP                            
Sbjct  620  EFIAGEDKR--------KKRLGDILSSGEFRPP---------------------------  644

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
                I+F   K +CD + +   Q G         FS V LHG +   +R+  L   + G 
Sbjct  645  ---IIVFVNIKRNCDAIAREIKQWG---------FSSVTLHGSKTQEQREAALASVRNGQ  692

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
               L+ TD+A RGID+  V  VIN  +    ++Y HRIGR GRA + G+AI+ +  E   
Sbjct  693  TDVLVATDLAGRGIDVPDVSLVINFNMATTIESYTHRIGRTGRAGKSGVAITFLGNEDTD  752

Query  626  VWYHVCSSRGKGCYNTRLKE  645
            V Y +     K   +   +E
Sbjct  753  VMYDLKQMIMKSSISRLPEE  772


 Score = 108 bits (270),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 1/104 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M ++ E G+   + + V ++ +  PT IQ  +IP+ +   D++  A TGSGKT +F +P+
Sbjct  366  MRSWDESGLPKRLMELVNKVGYKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTASFLLPL  425

Query  61   IQIVYETLK-DQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
            +  + E  + D+ E +K         +   +           F 
Sbjct  426  LVYIAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFT  469


>sp|Q4WIN6|DBP5_ASPFU ATP-dependent RNA helicase dbp5 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=dbp5 PE=3 SV=2
Length=489

 Score = 288 bits (738),  Expect = 3e-88, Method: Composition-based stats.
 Identities = 115/518 (22%), Positives = 201/518 (39%), Gaps = 113/518 (22%)

Query  199  DKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVAL  258
                +   KN +DLGL   I   + +        ++   L                 V  
Sbjct  69   PNNPLYSVKNFEDLGLDPRILKGLSSMNFRKPSKIQERALPLLLNNPP------KNLVGQ  122

Query  259  SKAPDGYIVKSQHSGNAQVTQ-TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPK  317
            S++  G       +  ++V   T+ +   P+ALI+ P+RELA Q L  ++   +++D   
Sbjct  123  SQSGTGKTAAFVLNALSRVDLSTEQMQKTPQALILAPTRELARQILGVVQVMGQFVDG--  180

Query  318  LRELLIIGGVAARDQLSVLEN-GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL  376
                LIIG     D+ S  +     IVVGTPG + D++       ++++ LVLDEAD +L
Sbjct  181  ----LIIGAAVPTDRDSRPKRLECSIVVGTPGTVGDMIKRRTFIPNKLKVLVLDEADNML  236

Query  377  S-QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED  435
              QG  D   R+   +P      + +QV++ SAT     V + + K       + L+ E+
Sbjct  237  DQQGLGDQCIRVKALLP------RDIQVVLFSATFPEH-VHQYASKFAPNANEITLQHEE  289

Query  436  SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGE  495
               + +  + +      D+    +    + T                             
Sbjct  290  LTVEGIKQLYLDCADGEDKYRTLVQLYGLLT-----------------------------  320

Query  496  YAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERK  555
                      +  +IIF +T+     +E+    +G          + V L G+R P  R 
Sbjct  321  ----------VGSSIIFVQTRAAAQEIERRMTAEG---------HTVVSLTGERDPSVRD  361

Query  556  QNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD-----------EKQNYVHRIG  604
              +++F++G+ + LI T+V ARGID+  V  VIN  +P+           + Q Y+HRIG
Sbjct  362  AIIDQFRRGEAKVLIATNVLARGIDVSTVSMVINYDIPELHQPNVPGRQADFQTYLHRIG  421

Query  605  RVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEE  664
            R GR  R+G++IS V+  +E                                ++L++I+ 
Sbjct  422  RTGRFGRVGVSISFVSNREE-------------------------------WEMLNQIQT  450

Query  665  HLNCTISQVE-PDIKVPVDEFDGKVTYGQKRAAGGGSY  701
            + NC I +V+  D     D     +   +      G  
Sbjct  451  YFNCEIQRVDTKDWDEVEDIIKKTIKNSRANPKFAGGK  488


 Score = 87.5 bits (215),  Expect = 9e-17, Method: Composition-based stats.
 Identities = 24/116 (21%), Positives = 50/116 (43%), Gaps = 7/116 (6%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            +  F ++G+ P I + +  M++  P+ IQ  ++PL+L     +++  +++G+GKT AF +
Sbjct  76   VKNFEDLGLDPRILKGLSSMNFRKPSKIQERALPLLLNNPPKNLVGQSQSGTGKTAAFVL  135

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSR  114
              +  V  + +  Q     KT      +   +                DGL   + 
Sbjct  136  NALSRVDLSTEQMQ-----KTPQALILAPTRELARQILGVVQVMGQFVDGLIIGAA  186


>sp|Q64060|DDX4_RAT Probable ATP-dependent RNA helicase DDX4 OS=Rattus 
norvegicus OX=10116 GN=Ddx4 PE=1 SV=1
Length=713

 Score = 295 bits (755),  Expect = 3e-88, Method: Composition-based stats.
 Identities = 104/463 (22%), Positives = 174/463 (38%), Gaps = 69/463 (15%)

Query  252  KDGFVALSKAPDGYIVKSQHSGNA-----QVTQTKFLP-NAPKALIVEPSRELAEQTLNN  305
                +A ++   G          A      +T ++F     P+ +IV P+REL  Q    
Sbjct  310  GRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLE  369

Query  306  IKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVR  365
             ++F        +R ++I GG      +  +  G +I+  TPGRL D++   K+ L QV+
Sbjct  370  ARKFS---FGTCVRAVVIYGGTQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVK  426

Query  366  FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH-  424
            +LVLDEAD +L  G+   + ++ +         ++ Q ++ SAT    ++++L+ + +  
Sbjct  427  YLVLDEADRMLDMGFGPEMKKLISC--PGMPSKEQRQTLLFSATFP-EEIQRLAGEFLKS  483

Query  425  FPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEM  484
               +V +         V   ++ V P                                  
Sbjct  484  NYLFVAVGQVGGACRDVQQSILQVGP----------------------------------  509

Query  485  WSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC  544
                  + K    V  ++    ++ ++F  TK   D +  +  Q+         + S   
Sbjct  510  ------VFKKRKLVEILRNIGDERPMVFVETKKKADFIATFLCQE---------KISTTS  554

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            +HGDR+  ER+Q L  F+ G    L+ T VAARG+DI  V +VIN  LP     YVHRIG
Sbjct  555  IHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIG  614

Query  605  RVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEE  664
            R GR    G AIS   TE +       +   +               W  E+   S    
Sbjct  615  RTGRCGNTGRAISFFDTESD-------NHLAQPLVKVLSDAQQDVPAWLEEIAFSSYAPP  667

Query  665  HLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDI  707
              + +              F GK T      +   +     D 
Sbjct  668  SFSNSTRGAVFASFDTRKNFQGKNTLNTAGISSAQAPNPVDDE  710


 Score = 104 bits (260),  Expect = 7e-22, Method: Composition-based stats.
 Identities = 24/106 (23%), Positives = 46/106 (43%), Gaps = 0/106 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E  +   +   + +  +   T +Q  SIP++L G D++  A+TGSGKT AF +P+
Sbjct  272  ILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPI  331

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            +  +          K+ +       +   +     Y     F+ G+
Sbjct  332  LAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGT  377


>sp|Q75BL8|IF4A_EREGS ATP-dependent RNA helicase eIF4A OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=TIF1 PE=3 SV=1
Length=396

 Score = 285 bits (730),  Expect = 4e-88, Method: Composition-based stats.
 Identities = 106/426 (25%), Positives = 179/426 (42%), Gaps = 71/426 (17%)

Query  228  FPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN------AQVTQ  279
            F    LK   L+  + +G  +     +   + + +  D        +G       A + +
Sbjct  24   FDELKLKEVLLRGIYGYGFVDPSAIQQRAILPIIEGHDVLAQAQSGTGKTGTFSIAALQR  83

Query  280  TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
                  AP+ALI+ P+RELA Q    +     ++D   ++    IGG   R+    L  G
Sbjct  84   IDESIKAPQALILAPTRELALQIQKVVMALALHMD---VKVHACIGGTDPREDAEALRAG  140

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
              IVVGTPGR+ D++         ++  +LDEAD +LS G+ + I ++   +P  T    
Sbjct  141  AQIVVGTPGRVFDMIERRNFKTDHIKMFILDEADEMLSSGFKEQIYKIFTMLPPTT----  196

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              QV++ SAT+   +V  +++K M+ P  + +K +    + +    + V  +  +     
Sbjct  197  --QVVLLSATMPK-EVLDVTDKFMNKPVRILVKKDALTLEGIQQYYINVESEEYK-----  248

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
                                            L   Y         + QA+IFC T+   
Sbjct  249  -----------------------------YDCLSDLY-----DSISVTQAVIFCNTRRKV  274

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            + L +               F+   ++ D    +R   ++ F+ G  R LI TD+ ARGI
Sbjct  275  EELTKRLTDD---------SFTVSAIYSDLPQAQRDTIMKEFRTGSSRILISTDLLARGI  325

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCY  639
            D+  V  VIN  LP+ K+NY+HRIGR GR  R G+AI+LV          +     +  Y
Sbjct  326  DVQQVSLVINYDLPNNKENYIHRIGRGGRFGRKGVAINLVTDRDVGDMREL-----ERFY  380

Query  640  NTRLKE  645
            +T+++E
Sbjct  381  STQIEE  386


 Score = 92.9 bits (229),  Expect = 9e-19, Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 13/135 (10%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E+ +   + + +    ++ P+ IQ  +I  I+ G DVL  A++G+GKTG FSI  
Sbjct  21   VHKFDELKLKEVLLRGIYGYGFVDPSAIQQRAILPIIEGHDVLAQAQSGTGKTGTFSIAA  80

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD----GLCCQSREV  116
            +Q + E++K  Q             +   +  +       A A+  D         +   
Sbjct  81   LQRIDESIKAPQ---------ALILAPTRELALQIQKVVMALALHMDVKVHACIGGTDPR  131

Query  117  KEWHGCRATKGLMKG  131
            ++    RA   ++ G
Sbjct  132  EDAEALRAGAQIVVG  146


>sp|A5UDI1|RHLB_HAEIE ATP-dependent RNA helicase RhlB OS=Haemophilus 
influenzae (strain PittEE) OX=374930 GN=rhlB PE=3 SV=1
Length=415

 Score = 286 bits (732),  Expect = 4e-88, Method: Composition-based stats.
 Identities = 100/399 (25%), Positives = 166/399 (42%), Gaps = 62/399 (16%)

Query  257  ALSKAPDGYIVKSQHSGNAQVTQTKFLPN----APKALIVEPSRELAEQTLNNIKQFKKY  312
              ++   G  +    +       T   PN     P+ALI+  +RELA Q  N+ +   K 
Sbjct  51   GQAQTGTGKTMAFL-TATFHHLLTHQDPNLEYPHPRALILASTRELAVQISNDAEFLAKA  109

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
                 L+  L  GG     QL  +E GVDI++GT GR+ D V  G + L +++ +VLDEA
Sbjct  110  CG---LKTALAYGGDGYDKQLQAIERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEA  166

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D +   G+   I  +  + P      +    ++ SATL S+ V++L+ + M+ P +++++
Sbjct  167  DRMFDLGFIRDIRYLLRKCP----TPQVRLTMLFSATL-SYKVRELAFEDMNDPEYIEIE  221

Query  433  GEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKIL  492
             E      +                                         E         
Sbjct  222  PEQKTGHRIK----------------------------------------EELFYPSNQD  241

Query  493  KGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPH  552
            K    +  +++   ++ I+F  TK  C+ +  Y    G              L GD    
Sbjct  242  KMALLLTLMEDEWPERCIVFANTKHRCEEIWGYLAADG---------HRVGLLTGDVAQK  292

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM  612
            +R   L++F  GD+  L+ TDVAARG+ I  V +V N  LPD++++YVHRIGR GRA   
Sbjct  293  KRLSLLKQFTDGDLDILVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGES  352

Query  613  GLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTI  651
            G++IS    E       +    G     ++ + +    +
Sbjct  353  GVSISFACEEYAMNLPAIEEYIGHSIPVSQYETEALLEL  391


 Score = 91.3 bits (225),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 52/352 (15%), Positives = 111/352 (32%), Gaps = 59/352 (17%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS++ + P +   + +  +   T IQA S+P+ L G DV   A+TG+GKT AF       
Sbjct  11   FSDLSLHPIVRDTLAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +      Q    +         +   +  +   +               +  + +  G +
Sbjct  71   LLTH---QDPNLEYPHPRALILASTRELAVQISN--------------DAEFLAKACGLK  113

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   ++G+           + +GT                 +  +Y 
Sbjct  114  TALAYGGDGYDKQLQAIERGV----------DILIGTT---------------GRVIDYV  148

Query  184  EEFTMH-DTIGCYLDIDKGHVKFSKNG----KDLGLAFEIPPHMKNQALFPACVLKNAEL  238
            ++  +  D I   + +D+    F        + L      P              K  EL
Sbjct  149  KQGVIGLDEIQVVV-LDEADRMFDLGFIRDIRYLLRKCPTPQVRLTMLFSATLSYKVREL  207

Query  239  KFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSREL  298
             F    +      +       +  +     S     A +          + ++   ++  
Sbjct  208  AFEDMNDPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTLMEDEWPERCIVFANTK--  265

Query  299  AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                 +  ++   Y+     R  L+ G VA + +LS+L+      +DI+V T
Sbjct  266  -----HRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILVAT  312


>sp|Q61496|DDX4_MOUSE ATP-dependent RNA helicase DDX4 OS=Mus musculus 
OX=10090 GN=Ddx4 PE=1 SV=2
Length=702

 Score = 295 bits (754),  Expect = 5e-88, Method: Composition-based stats.
 Identities = 97/428 (23%), Positives = 167/428 (39%), Gaps = 69/428 (16%)

Query  252  KDGFVALSKAPDGYIVKSQHSGNA-----QVTQTKFLP-NAPKALIVEPSRELAEQTLNN  305
                +A ++   G          A      +T ++F     P+ +IV P+REL  Q    
Sbjct  298  GRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLE  357

Query  306  IKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVR  365
             ++F        +R ++I GG      +  +  G +I+  TPGRL D++   K+ L QV+
Sbjct  358  ARKFS---FGTCVRAVVIYGGTQFGHSVRQIVQGCNILCATPGRLMDIIGKEKIGLKQVK  414

Query  366  FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH-  424
            +LVLDEAD +L  G+   + ++ +         ++ Q ++ SAT    ++++L+   +  
Sbjct  415  YLVLDEADRMLDMGFGPEMKKLISC--PGMPSKEQRQTLLFSATFP-EEIQRLAGDFLKS  471

Query  425  FPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEM  484
               +V +         V   ++ V   + R                              
Sbjct  472  SYLFVAVGQVGGACRDVQQTILQVGQYSKR------------------------------  501

Query  485  WSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC  544
                      E  V  ++    ++ ++F  TK   D +  +  Q+         + S   
Sbjct  502  ----------EKLVEILRNIGDERTMVFVETKKKADFIATFLCQE---------KISTTS  542

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            +HGDR+  ER+Q L  F+ G    L+ T VAARG+DI  V +VIN  LP     YVHRIG
Sbjct  543  IHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIG  602

Query  605  RVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEE  664
            R GR    G AIS   T+ +       +   +               W  E+   + +  
Sbjct  603  RTGRCGNTGRAISFFDTDSD-------NHLAQPLVKVLSDAQQDVPAWLEEIAFSTYVPP  655

Query  665  HLNCTISQ  672
              + +   
Sbjct  656  SFSSSTRG  663


 Score = 104 bits (260),  Expect = 7e-22, Method: Composition-based stats.
 Identities = 24/106 (23%), Positives = 46/106 (43%), Gaps = 0/106 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E  +   +   + +  +   T +Q  SIP++L G D++  A+TGSGKT AF +P+
Sbjct  260  ILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPI  319

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            +  +          K+ +       +   +     Y     F+ G+
Sbjct  320  LAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGT  365


>sp|Q4I7F9|PRP28_GIBZE Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 
/ FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=PRP28 PE=3 
SV=1
Length=721

 Score = 295 bits (755),  Expect = 5e-88, Method: Composition-based stats.
 Identities = 95/423 (22%), Positives = 165/423 (39%), Gaps = 75/423 (18%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP-----NAPKALIVEPSRELAEQ  301
                     + ++    G            ++    L      + P ALI+ P+REL +Q
Sbjct  320  PIALQARDLIGVAVTGSGKTAAFLLPLLVYISDLPPLDEINKHDGPYALIMAPTRELVQQ  379

Query  302  TLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNL  361
                 ++F         R + I+GG    +Q   L +G +IVV TPGRL D +    L L
Sbjct  380  IETEARKFA---GPLGFRVVSIVGGHQIEEQAYNLRDGAEIVVATPGRLLDCIERRLLVL  436

Query  362  SQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG-------------------KRLQ  402
            SQ  ++++DEAD ++  G+ + +N++ + +P                         +  Q
Sbjct  437  SQCCYVIMDEADRMIDLGFEESVNKILDALPVTNEKPDTDEAENAQIMQRYLGGRDRYRQ  496

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
             ++ +AT+    V+++++K +  P  V +       DTV   V  V+ +  R        
Sbjct  497  TMMYTATMPPL-VERIAKKYLRRPAIVTIGNAGEAVDTVEQRVEFVSGEDRR--------  547

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
                                          K          +     I+F   K +CD +
Sbjct  548  ------------------------------KKRLQEILSSGNFGPPIIVFVNIKRNCDAV  577

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
             +   Q G         +S V LHG +   +R+  L   + G  + L+ TD+A RGID+ 
Sbjct  578  ARDIKQMG---------WSAVTLHGSKTQEQREAALGSVRAGHTQVLVATDLAGRGIDVP  628

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTR  642
             V  V+N  +    ++Y HRIGR GRA + G+AI+ +  E  +  Y +     K   +  
Sbjct  629  DVSLVVNFNMATNIESYTHRIGRTGRAGKSGVAITFLGPEDHETMYDLKQILSKSSISKV  688

Query  643  LKE  645
             +E
Sbjct  689  PEE  691


 Score = 101 bits (252),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 45/103 (44%), Gaps = 1/103 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M ++ E  +   +   V+++ +  P+ IQ  +IP+ L   D++  A TGSGKT AF +P+
Sbjct  287  MRSWQESNLPQRLLNIVDDVGYKDPSPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPL  346

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
            +  + + L    E  K         +   +           FA
Sbjct  347  LVYISD-LPPLDEINKHDGPYALIMAPTRELVQQIETEARKFA  388


>sp|A4RN46|PRP5_PYRO7 Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 
/ FGSC 8958) OX=242507 GN=PRP5 PE=3 SV=1
Length=1012

 Score = 301 bits (770),  Expect = 5e-88, Method: Composition-based stats.
 Identities = 105/464 (23%), Positives = 181/464 (39%), Gaps = 96/464 (21%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN--APKALIVEPSRELAEQTLN  304
                     V ++K   G  +         +   + + +   P  LI+ P+RELA Q   
Sbjct  410  PVIMSGRDVVGVAKTGSGKTMAFLLPMFRHIKDQEPVKDNEGPIGLILTPTRELAVQIFR  469

Query  305  NIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV---STGKLNL  361
            + K F K +    LR +   GG   +DQ++ L+ G +IVV T GR+ DL+       ++L
Sbjct  470  DCKPFLKTLG---LRAVCAYGGPPIKDQIADLKRGAEIVVATTGRMIDLLAANQGRVVSL  526

Query  362  SQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEK  421
             +  ++VLDEAD +   G+   + ++   +          Q ++ SAT+    +  L +K
Sbjct  527  RRTTYIVLDEADRMFDMGFEPQVMKIFANV------RPDRQTVLFSATMPKI-MDALVKK  579

Query  422  IMHFPTWVDLKGEDSVPDTVHHVVV--PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGA  479
            ++  P  +++ G+  V   +  +V       K +RL E LG+ +   DDV          
Sbjct  580  VLKNPVEIEVGGKSVVASEITQIVEIRDEKSKFNRLLELLGELYKDDDDV----------  629

Query  480  NSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQ  539
                                        +++IF   +   D L +  +++G         
Sbjct  630  ----------------------------RSLIFVERQEKADELLRELLRKG---------  652

Query  540  FSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNY  599
            + C+ LHG +   +R   +  FK G    +I T VAARG+D+  +  V+N   P+  ++Y
Sbjct  653  YGCMSLHGGKDQVDRDSTISDFKSGVCPVMIATSVAARGLDVKQLKLVVNYDAPNHLEDY  712

Query  600  VHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLL  659
            VHR GR GRA   G A++ V  E+E     +  +                          
Sbjct  713  VHRAGRTGRAGNTGTAVTFVTEEQENCAIGIAKA--------------------------  746

Query  660  SEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKG  703
                  L  +   V   +      F  KV  G+ +   G   KG
Sbjct  747  ------LEQSGQPVPEKLIEMRKAFREKVKAGKAKDQSGFGGKG  784


 Score = 106 bits (265),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 4/96 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  +S  G+   I   + ++++  PT IQ +++P+I+ G DV+  A+TGSGKT AF +P+
Sbjct  377  VQKWSLCGLTRPILDVIAKLEYDKPTAIQMQALPVIMSGRDVVGVAKTGSGKTMAFLLPM  436

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
             + +    KDQ+  K  +  I    +   +  +  +
Sbjct  437  FRHI----KDQEPVKDNEGPIGLILTPTRELAVQIF  468


>sp|Q3MSQ8|DDX4_PELLE Probable ATP-dependent RNA helicase DDX4 
OS=Pelophylax lessonae OX=45623 GN=ddx4 PE=2 SV=1
Length=724

 Score = 295 bits (754),  Expect = 6e-88, Method: Composition-based stats.
 Identities = 96/417 (23%), Positives = 162/417 (39%), Gaps = 67/417 (16%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQV------TQTKFLPNAPKALIVEPSRELAE  300
                     +A ++   G          A +      +        P+A+IV P+REL  
Sbjct  318  PIIVAGRDLMACAQTGSGKTAAFLLPILAHLMVKGVESSAFQTLKEPEAIIVAPTRELIN  377

Query  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN  360
            Q   + ++F        +R ++I GG      L  +  G +I+  TPGRL D++   K+ 
Sbjct  378  QIYLDARKFS---YGTCVRPVVIYGGTQMFHSLKQISEGCNILCATPGRLLDVIRKEKIG  434

Query  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
            L+++R+LVLDEAD +L  G+ + I  +           +  Q ++ SAT  S  ++ L+ 
Sbjct  435  LTKLRYLVLDEADRMLDMGFREDIENLLKS--SGMPSKEERQTLMFSATFPS-SIQSLAR  491

Query  421  KIMH-FPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGA  479
            +I+     +V +         V  +V+ V+                              
Sbjct  492  EILKPDYLFVVVGQVGGACSDVEQMVIEVDE-----------------------------  522

Query  480  NSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQ  539
                         K +  +  ++E   ++ ++F +TK   D +  +  Q+         +
Sbjct  523  -----------FGKKDKLMEILQEIGSERTMVFVKTKKKADFIATFLCQE---------K  562

Query  540  FSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNY  599
                 +HGDR+  ER+  L  F+ G    ++ T VAARG+DI  V YVIN  +PD+   Y
Sbjct  563  VPSTSIHGDREQKERETALRDFRTGQCPVIVATSVAARGLDIENVSYVINFDIPDDIDEY  622

Query  600  VHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEM  656
            VHRIGR GR    G AIS      +           +               W  E+
Sbjct  623  VHRIGRTGRCGNTGRAISFFDKRGDD-----EQRIARSLVKVLSDAHQEVPAWLEEV  674


 Score = 100 bits (249),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 0/106 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E  +   +A+ V +  ++  T IQ  SIP+I+ G D++  A+TGSGKT AF +P+
Sbjct  285  ILTFEEANLCDSLAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMACAQTGSGKTAAFLLPI  344

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            +  +     +    +  K       +   +     Y     F+ G+
Sbjct  345  LAHLMVKGVESSAFQTLKEPEAIIVAPTRELINQIYLDARKFSYGT  390


>sp|Q6CDV4|IF4A_YARLI ATP-dependent RNA helicase eIF4A OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=TIF1 
PE=3 SV=1
Length=395

 Score = 285 bits (728),  Expect = 6e-88, Method: Composition-based stats.
 Identities = 112/449 (25%), Positives = 191/449 (43%), Gaps = 78/449 (17%)

Query  197  DIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFV  256
            + D+    F     DLGL  E+   +          ++   +           P   G  
Sbjct  16   NYDEVVTSFD----DLGLKDELLRGIYGYGFENPSSIQQRAI----------LPVIKGND  61

Query  257  ALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNP  316
             L++A  G   K+     + +         P+ALI+ P+RELA Q    +  F +Y+   
Sbjct  62   VLAQAQSG-TGKTATFSISALQNIDEKIKKPQALIIAPTRELAHQIQKVVLAFGEYM---  117

Query  317  KLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL  376
            K+     IGG +  + + V++ GV ++VGTPGR+ D++    L    ++  +LDEAD +L
Sbjct  118  KIECHACIGGTSVAEDIRVIQEGVHVIVGTPGRIHDMIERRILKTDLIKMFILDEADEML  177

Query  377  SQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDS  436
            S+ + D I  +   +P+ T      Q ++ SAT+   +V  ++ K M  P  + +K ++ 
Sbjct  178  SREFKDPIYDIFTTLPETT------QTVLLSATMP-AEVLDITGKFMRDPVRILVKKDEL  230

Query  437  VPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEY  496
              + +    + V  ++                                        K E 
Sbjct  231  TLEGIKQFYIDVEQES---------------------------------------YKFEV  251

Query  497  AVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQ  556
                 +   + QA+IFC T+   D L Q   +           F+   +HG+ +  +R  
Sbjct  252  LCDLYETINVSQAVIFCNTRRKVDYLTQALTEA---------DFTVSSMHGETEQSQRDV  302

Query  557  NLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAI  616
             ++ F+ G  R LI TD+ ARGID+  V  VIN  LP  ++NY+HRIGR GR  R G+AI
Sbjct  303  IMKAFRTGSSRILITTDLLARGIDVQQVSLVINFDLPSNRENYIHRIGRGGRFGRKGVAI  362

Query  617  SLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            + V +E   +   +     +  Y+T + E
Sbjct  363  NFVTSEDHGMLKEL-----ERFYSTEIVE  386


 Score = 100 bits (249),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 33/133 (25%), Positives = 57/133 (43%), Gaps = 2/133 (2%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F ++G+  E+ + +    +  P+ IQ  +I  ++ G DVL  A++G+GKT  FSI  
Sbjct  21   VTSFDDLGLKDELLRGIYGYGFENPSSIQQRAILPVIKGNDVLAQAQSGTGKTATFSISA  80

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA-IGSDGLCCQSREVKE-  118
            +Q + E +K  Q      T                Y +    A IG   +    R ++E 
Sbjct  81   LQNIDEKIKKPQALIIAPTRELAHQIQKVVLAFGEYMKIECHACIGGTSVAEDIRVIQEG  140

Query  119  WHGCRATKGLMKG  131
             H    T G +  
Sbjct  141  VHVIVGTPGRIHD  153


>sp|Q2HAD8|PRP5_CHAGB Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 
/ DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=PRP5 
PE=3 SV=1
Length=1064

 Score = 302 bits (772),  Expect = 6e-88, Method: Composition-based stats.
 Identities = 108/445 (24%), Positives = 184/445 (41%), Gaps = 75/445 (17%)

Query  231  CVLKNAELKF--NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFL-----  283
            C L    L      G E+           +    D   V    SG         L     
Sbjct  434  CGLTRPILDVVEGLGYEKPTSIQMQALPVIMSGRDVIGVAKTGSGKTMAFVLPMLRHIKD  493

Query  284  ------PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE  337
                   +   ALI+ P+REL  Q  +++  F K +   KLR +   GG A +DQ++ L+
Sbjct  494  QDPVTGDDGAIALIMTPTRELCTQIYSDLLPFAKAL---KLRAIAAYGGNAIKDQIAELK  550

Query  338  NGVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV  394
             G +I+V TPGR+ DL++       NL +  +LVLDEAD +   G+   + ++ N +   
Sbjct  551  RGAEIIVATPGRMIDLLAANSGRVTNLKRATYLVLDEADRMFDMGFEPQVMKIFNNV---  607

Query  395  TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNP--KT  452
                   Q I+ SAT+    +  L++K++  P  + + G   V   +  +V  ++   K 
Sbjct  608  ---RPDRQTILFSATMPRI-IDALTKKVLREPVEIQVGGRSVVAPEITQIVEILDEGKKF  663

Query  453  DRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF  512
             RL E LG+ +   DDV                                      +A+IF
Sbjct  664  VRLLELLGELYADDDDV--------------------------------------RALIF  685

Query  513  CRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICT  572
               +   D+L +  +++G         + C+ +HG +   +R   +  FKKG    +I T
Sbjct  686  VERQEKADDLLREVLRRG---------YGCMSIHGGKDQEDRNSTISDFKKGVCPIMIAT  736

Query  573  DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
             VAARG+D+  +  V+N   P+  ++YVHR GR GRA   G A++ +  E+E     +  
Sbjct  737  SVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFITEEQENCAPGIAK  796

Query  633  SRGKGCYNTRLKEDGGCTIWYNEMQ  657
            +  +       + +     W  +++
Sbjct  797  ALEQSGQPVPEQLNEMRKAWKEKVK  821


 Score = 113 bits (282),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 64/372 (17%), Positives = 129/372 (35%), Gaps = 51/372 (14%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  +S+ G+   I   VE + +  PT IQ +++P+I+ G DV+  A+TGSGKT AF +P+
Sbjct  428  VQKWSQCGLTRPILDVVEGLGYEKPTSIQMQALPVIMSGRDVIGVAKTGSGKTMAFVLPM  487

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120
            ++ +    KDQ         I    +   +     Y     FA        + R +  + 
Sbjct  488  LRHI----KDQDPVTGDDGAIALIMTPTRELCTQIYSDLLPFAK-----ALKLRAIAAYG  538

Query  121  GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD  180
            G      + + K   E+     G   +      +       +  +       +  +  F+
Sbjct  539  GNAIKDQIAELKRGAEIIVATPGRM-IDLLAANSGRVTNLKRATYLVLDEADRMFDMGFE  597

Query  181  NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF  240
                +   +      +  D+  + FS           I   +  + L     ++      
Sbjct  598  PQVMKIFNN------VRPDRQTILFSA------TMPRIIDALTKKVLREPVEIQ------  639

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE  300
              G      P     V +      ++   +  G     +     +  +ALI    +E A+
Sbjct  640  -VGGRSVVAPEITQIVEILDEGKKFVRLLELLG-----ELYADDDDVRALIFVERQEKAD  693

Query  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQ---LSVLENG-VDIVVGTPGRLDDLVST  356
              L  + +            + I GG    D+   +S  + G   I++ T       V+ 
Sbjct  694  DLLREVLR-------RGYGCMSIHGGKDQEDRNSTISDFKKGVCPIMIAT------SVAA  740

Query  357  GKLNLSQVRFLV  368
              L++ Q++ +V
Sbjct  741  RGLDVKQLKLVV  752


>sp|Q5BCU6|PRP28_EMENI Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 
/ CBS 112.46 / NRRL 194 / M139) OX=227321 GN=prp28 PE=3 
SV=2
Length=782

 Score = 296 bits (758),  Expect = 7e-88, Method: Composition-based stats.
 Identities = 97/383 (25%), Positives = 163/383 (43%), Gaps = 76/383 (20%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P A+++ P+RELA+Q     K   K+ +      + I+GG +  +Q   L NG +I++
Sbjct  423  DGPYAIVLAPTRELAQQIEIEAK---KFTEPLGFNVVSIVGGHSFEEQAYSLRNGAEIII  479

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP------------  392
             TPGRL D +    L LSQ  ++++DEAD ++  G+ + +N++ + +P            
Sbjct  480  ATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEKPDTEEAE  539

Query  393  -------QVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
                    + S  +  Q ++ +AT+ +  V++++ K +  P  V +       DTV   V
Sbjct  540  DSSAMSRHLGSKDRYRQTMMYTATMPTA-VERIARKYLRRPAIVTIGSAGEAVDTVEQRV  598

Query  446  VPV---NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
              +   + +  RL E L     R                                     
Sbjct  599  EMIAGEDKRKKRLGEILSSGDFRPP-----------------------------------  623

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
                   I+F   K +CD + +   Q G         FS V LHG +   +R+  L   +
Sbjct  624  ------IIVFVNIKRNCDAIAREIKQWG---------FSSVTLHGSKTQEQREAALASVR  668

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             G    L+ TD+A RGID+  V  VIN  +    ++Y HRIGR GRA + G+AI+ +  E
Sbjct  669  NGSTDVLVATDLAGRGIDVPDVSLVINFNMATSIESYTHRIGRTGRAGKSGVAITFLGNE  728

Query  623  KEKVWYHVCSSRGKGCYNTRLKE  645
               V Y +     K   +   +E
Sbjct  729  DADVMYDLKQMLIKSPISRVPEE  751


 Score = 110 bits (276),  Expect = 8e-24, Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 1/104 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M ++ E G+   + + V+ + +  PT IQ  +IP+ +   D++  A TGSGKT AF +P+
Sbjct  345  MRSWDESGLPKRLLELVDRVGYKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPL  404

Query  61   IQIVYETLK-DQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
            +  + E  + D+ E +K         +   +           F 
Sbjct  405  LCYIAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFT  448


>sp|A7EGG4|PRP28_SCLS1 Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 
1980 / Ss-1) OX=665079 GN=prp28 PE=3 SV=1
Length=816

 Score = 297 bits (759),  Expect = 8e-88, Method: Composition-based stats.
 Identities = 101/482 (21%), Positives = 181/482 (38%), Gaps = 92/482 (19%)

Query  213  GLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHS  272
             L   +   +          ++ A +                 + ++    G        
Sbjct  385  KLPKRLLDVINQVGYDEPSAVQRAAIPIAL--------QARDLIGVAVTGSGKTAAFLLP  436

Query  273  GNAQVTQTKFLP-----NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
                +++   L      + P A+I+ P+RELA+Q     K+F   +       + I+GG 
Sbjct  437  LLVYISELPPLNEFTKNDGPYAIILAPTRELAQQIEVEAKKFATPLG---FTCVSIVGGH  493

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM  387
            +  +Q   L NG +I++ TPGRL D +    L L Q  ++++DEAD ++  G+ + +N++
Sbjct  494  SLEEQSYNLRNGAEIIIATPGRLVDCIERRVLVLGQCCYIIMDEADRMIDLGFEESVNKI  553

Query  388  HNQIP-------------------QVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTW  428
             + +P                    +    +  Q ++ +AT+    V+K+++K +  P  
Sbjct  554  LDALPVSNEKPDTDDAEDAQAMSRHLGGKDRYRQTMMYTATMPPA-VEKIAKKYLRRPAI  612

Query  429  VDLKGEDSVPDTVHHVVVPV---NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW  485
            V +       +TV   V  V   + +  RL E L     +                    
Sbjct  613  VTIGNIGEAVETVEQRVEFVAGEDKRKKRLNEILASGEFQPP------------------  654

Query  486  SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL  545
                                    I+F   K +CD + +     G         F+ V L
Sbjct  655  -----------------------IIVFVNIKRNCDAVARDIKHMG---------FTSVTL  682

Query  546  HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR  605
            HG +   +R+  L   + G    L+ TD+A RGID+  V  V+N  +    ++Y HRIGR
Sbjct  683  HGSKTQEQREAALASVRSGATNVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGR  742

Query  606  VGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL---LSEI  662
             GRA + G+AI+ +  E     Y +     K   +   +E         + Q    L +I
Sbjct  743  TGRAGKSGVAITFLGNEDADTMYDLKQMLMKSSISRVPEELRKHEAAQQKSQRGQGLKKI  802

Query  663  EE  664
            EE
Sbjct  803  EE  804


 Score = 105 bits (261),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 1/111 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M ++SE  +   +   + ++ +  P+ +Q  +IP+ L   D++  A TGSGKT AF +P+
Sbjct  378  MRSWSESKLPKRLLDVINQVGYDEPSAVQRAAIPIALQARDLIGVAVTGSGKTAAFLLPL  437

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
            +  + E L    E  K         +   +           FA      C 
Sbjct  438  LVYISE-LPPLNEFTKNDGPYAIILAPTRELAQQIEVEAKKFATPLGFTCV  487


>sp|P0CQ80|DHH1_CRYNJ ATP-dependent RNA helicase DHH1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=DHH1 PE=3 SV=1
Length=625

 Score = 292 bits (747),  Expect = 8e-88, Method: Composition-based stats.
 Identities = 109/427 (26%), Positives = 174/427 (41%), Gaps = 70/427 (16%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             +D GL  E+   +          ++   +               G   L++A +G   K
Sbjct  38   FEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALT----------GRDILARAKNG-TGK  86

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
            +       + +     +  +ALI+ P+RELA QT    K    +I  P L+ ++  GG  
Sbjct  87   TASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTLGAHI--PNLQVMITTGGTT  144

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
             RD +  L+  V I+VGTPGR+ DL S G  +L++    V+DEAD LLS+ +   I +  
Sbjct  145  LRDDILRLQQPVHILVGTPGRILDLGSKGIASLNKCGVFVMDEADKLLSEDFMPVIEQTL  204

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
               PQ        QV++ SAT   + VK+  ++ M  P  ++L  E ++     +     
Sbjct  205  ALCPQ------ERQVMLFSATFP-WTVKEFKDQHMVQPYEINLMDELTLKGVTQYYAYVE  257

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
              +                                         K         + +++Q
Sbjct  258  ESQ-----------------------------------------KVHCLNTLFSKLQINQ  276

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
            +IIFC +    + L +   + G         +SC   H   +   R +    F+ G  R 
Sbjct  277  SIIFCNSTNRVELLAKKVTELG---------YSCFYSHAKMQQAHRNRVFHDFRNGMTRN  327

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            L+C+D+  RGIDI  V  VIN   P   ++Y+HRIGR GR   +GLAISL+  E     Y
Sbjct  328  LVCSDLLTRGIDIQAVNVVINFDFPRTAESYLHRIGRSGRFGHLGLAISLLTLEDRHNLY  387

Query  629  HVCSSRG  635
             + S  G
Sbjct  388  RIESELG  394


 Score = 100 bits (249),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 22/93 (24%), Positives = 41/93 (44%), Gaps = 9/93 (10%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F + G+  E+   +    +  P+ IQ ++IP+ L G D+L  A+ G+GKT +F IP +
Sbjct  36   SRFEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALTGRDILARAKNGTGKTASFIIPTL  95

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
              +  +L   Q                 +  + 
Sbjct  96   NRINTSLSHIQ---------ALILVPTRELALQ  119


>sp|P0CQ81|DHH1_CRYNB ATP-dependent RNA helicase DHH1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=DHH1 PE=3 SV=1
Length=625

 Score = 292 bits (747),  Expect = 8e-88, Method: Composition-based stats.
 Identities = 109/427 (26%), Positives = 174/427 (41%), Gaps = 70/427 (16%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             +D GL  E+   +          ++   +               G   L++A +G   K
Sbjct  38   FEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALT----------GRDILARAKNG-TGK  86

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
            +       + +     +  +ALI+ P+RELA QT    K    +I  P L+ ++  GG  
Sbjct  87   TASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTLGAHI--PNLQVMITTGGTT  144

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
             RD +  L+  V I+VGTPGR+ DL S G  +L++    V+DEAD LLS+ +   I +  
Sbjct  145  LRDDILRLQQPVHILVGTPGRILDLGSKGIASLNKCGVFVMDEADKLLSEDFMPVIEQTL  204

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
               PQ        QV++ SAT   + VK+  ++ M  P  ++L  E ++     +     
Sbjct  205  ALCPQ------ERQVMLFSATFP-WTVKEFKDQHMVQPYEINLMDELTLKGVTQYYAYVE  257

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
              +                                         K         + +++Q
Sbjct  258  ESQ-----------------------------------------KVHCLNTLFSKLQINQ  276

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
            +IIFC +    + L +   + G         +SC   H   +   R +    F+ G  R 
Sbjct  277  SIIFCNSTNRVELLAKKVTELG---------YSCFYSHAKMQQAHRNRVFHDFRNGMTRN  327

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            L+C+D+  RGIDI  V  VIN   P   ++Y+HRIGR GR   +GLAISL+  E     Y
Sbjct  328  LVCSDLLTRGIDIQAVNVVINFDFPRTAESYLHRIGRSGRFGHLGLAISLLTLEDRHNLY  387

Query  629  HVCSSRG  635
             + S  G
Sbjct  388  RIESELG  394


 Score = 100 bits (249),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 22/93 (24%), Positives = 41/93 (44%), Gaps = 9/93 (10%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F + G+  E+   +    +  P+ IQ ++IP+ L G D+L  A+ G+GKT +F IP +
Sbjct  36   SRFEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALTGRDILARAKNGTGKTASFIIPTL  95

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
              +  +L   Q                 +  + 
Sbjct  96   NRINTSLSHIQ---------ALILVPTRELALQ  119


>sp|Q4R5S7|DDX4_MACFA Probable ATP-dependent RNA helicase DDX4 
OS=Macaca fascicularis OX=9541 GN=DDX4 PE=2 SV=1
Length=725

 Score = 294 bits (753),  Expect = 8e-88, Method: Composition-based stats.
 Identities = 97/412 (24%), Positives = 162/412 (39%), Gaps = 69/412 (17%)

Query  252  KDGFVALSKAPDGYIVKSQHSGNA-----QVTQTKFLP-NAPKALIVEPSRELAEQTLNN  305
                +A ++   G          A      +T + F     P+ +IV P+REL  Q    
Sbjct  326  GRDLMACAQTGSGKTAAFLLPILAHMMHDGITASCFKELQEPECIIVAPTRELVNQIYLE  385

Query  306  IKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVR  365
             ++F        +R ++I GG      +  +  G +I+  TPGRL D++   K+ L Q++
Sbjct  386  ARKFS---FGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIK  442

Query  366  FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH-  424
            +LVLDEAD +L  G+   + ++ +         ++ Q ++ SAT    ++++L+ + +  
Sbjct  443  YLVLDEADRMLDMGFGPEMKKLISC--PGMPSKEQRQTLMFSATFP-EEIQRLAAEFLKS  499

Query  425  FPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEM  484
               +V +         V   V+ V                                    
Sbjct  500  NYLFVAVGQVGGACRDVQQTVLQVG-----------------------------------  524

Query  485  WSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC  544
                 +  K E  V  ++    ++ ++F  TK   D +  +  Q+         + S   
Sbjct  525  -----QFSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQE---------KISTTS  570

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            +HGDR+  ER+Q L  F+ G    L+ T VAARG+DI  V +VIN  LP     YVHRIG
Sbjct  571  IHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIG  630

Query  605  RVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEM  656
            R GR    G AIS    E +       +   +               W  E+
Sbjct  631  RTGRCGNTGRAISFFDLESD-------NHLAQPLVKVLTDAQQDVPAWLEEI  675


 Score = 104 bits (260),  Expect = 7e-22, Method: Composition-based stats.
 Identities = 25/106 (24%), Positives = 46/106 (43%), Gaps = 0/106 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E  +   +   + +  +   T +Q  SIP+IL G D++  A+TGSGKT AF +P+
Sbjct  288  ILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPI  347

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            +  +          K+ +       +   +     Y     F+ G+
Sbjct  348  LAHMMHDGITASCFKELQEPECIIVAPTRELVNQIYLEARKFSFGT  393


>sp|Q7ZY47|DDX42_XENLA ATP-dependent RNA helicase DDX42 OS=Xenopus 
laevis OX=8355 GN=ddx42 PE=2 SV=1
Length=947

 Score = 299 bits (766),  Expect = 9e-88, Method: Composition-based stats.
 Identities = 96/431 (22%), Positives = 163/431 (38%), Gaps = 67/431 (16%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
              +    G   ++   ++         ++   +                 + ++K   G 
Sbjct  249  CSSFAHFGFDEQLLHQIRKSEYTQPTPIQCQGIPVALS--------GRDMIGIAKTGSGK  300

Query  266  IVKSQHSGNAQVTQTKFLP--NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLI  323
                       +   K L   + P A+IV P+REL +Q  +  K+F K  +   LR + +
Sbjct  301  TAAFIWPILVHIMDQKELQPADGPIAVIVCPTRELCQQIHSECKRFGKAYN---LRSVAV  357

Query  324  IGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDF  383
             GG +  +Q   L+ G +IVV TPGRL D V     NL +V +LV DEAD +   G+   
Sbjct  358  YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ  417

Query  384  INRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHH  443
            +  + N +          Q ++ SAT     ++KL+  I+  P  V         + +  
Sbjct  418  VRSIANHV------RPDRQTLLFSATF-RKKIEKLARDILVDPIRVVQGDIGEANEDITQ  470

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
            VV  +                                 PE W+   +        R ++ 
Sbjct  471  VVEILPS------------------------------GPEKWTWLTR--------RLVEF  492

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
                  ++F   K + + L     Q                LHGD    ER + +  FKK
Sbjct  493  TSTGSVLVFVTKKANAEELAANLRQD---------DHPLGLLHGDMDQSERNKVISDFKK  543

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
              +  L+ TDVAARG+DI  +  V+N  +  +   + HRIGR GRA   G+A +L+ +++
Sbjct  544  KSIPVLVATDVAARGLDIPSIKTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTSKE  603

Query  624  EKVWYHVCSSR  634
                  +  + 
Sbjct  604  SNFAGDLVRNL  614


 Score = 106 bits (264),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 4/104 (4%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            ++F+  G   ++   + + ++  PT IQ + IP+ L G D++  A+TGSGKT AF  P++
Sbjct  250  SSFAHFGFDEQLLHQIRKSEYTQPTPIQCQGIPVALSGRDMIGIAKTGSGKTAAFIWPIL  309

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG  105
              +     DQ+E +     I        +     +     F   
Sbjct  310  VHIM----DQKELQPADGPIAVIVCPTRELCQQIHSECKRFGKA  349


>sp|Q6CH90|SUB2_YARLI ATP-dependent RNA helicase SUB2 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=SUB2 PE=3 
SV=2
Length=441

 Score = 286 bits (731),  Expect = 9e-88, Method: Composition-based stats.
 Identities = 101/406 (25%), Positives = 163/406 (40%), Gaps = 62/406 (15%)

Query  254  GFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI  313
            G   L +A  G + K+     + + Q + +P     +++  +RELA Q +N   +F KY+
Sbjct  94   GTDVLCQAKAG-VGKTAVFVLSTLQQLEPVPGECSVVVLCHTRELAYQIMNEYARFSKYL  152

Query  314  DNPKLRELLIIGGVAARDQLSVLENG---VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLD  370
              P ++  +  GG   +  + +++N      ++V TPGRL  LV    L L  V+  V+D
Sbjct  153  --PDVKTAVFYGGSPIQKDIELIQNKETSPHVIVATPGRLHALVRDKHLRLGNVKTFVID  210

Query  371  EADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVD  430
            E D +L       + R   +I +VT   ++ QV++ SATL S +++ + +K M  P  + 
Sbjct  211  ECDKVLD---QIDMRRDVQEIFRVTP--RQKQVMMFSATL-SQEIRPICKKFMSSPLEIL  264

Query  431  LKGEDS-VPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAI  489
            +  E       +    V V  K+                                     
Sbjct  265  VDDEGKLTLHGLQQYYVDVEEKS-------------------------------------  287

Query  490  KILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDR  549
               K       +   + +Q IIF ++    + L Q     G         F C  +H   
Sbjct  288  ---KNRKLGDLLDNLEFNQVIIFVKSTSRANGLSQVLNANG---------FPCTAVHSGI  335

Query  550  KPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA  609
               ER    + FK+   R  + TDV  RGIDI  +   IN  LP E   Y+HR+GR GR 
Sbjct  336  PQEERIARYKEFKEFKKRICVSTDVFGRGIDIERINLAINYDLPAEADQYLHRVGRAGRF  395

Query  610  ERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNE  655
               GLAIS V+T ++K        R +        E    + + N 
Sbjct  396  GTKGLAISFVSTPEDKEVLAKIQERFEVNIAPYPAEGVDPSTYMNS  441


 Score = 75.9 bits (185),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 43/103 (42%), Gaps = 9/103 (9%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F +  + PE+ +A+ +  +  P+++Q   IP  + G DVL  A+ G GKT  F +  +
Sbjct  57   TGFRDFLLKPELLRAIVDCGFEHPSEVQQVCIPQSILGTDVLCQAKAGVGKTAVFVLSTL  116

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            Q +     +   G+     +        +      +  + F+ 
Sbjct  117  QQL-----EPVPGECSVVVLCH----TRELAYQIMNEYARFSK  150


>sp|A1CHL3|PRP28_ASPCL Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 
513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 
GN=prp28 PE=3 SV=1
Length=798

 Score = 296 bits (757),  Expect = 1e-87, Method: Composition-based stats.
 Identities = 100/457 (22%), Positives = 178/457 (39%), Gaps = 80/457 (18%)

Query  210  KDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKS  269
            ++ GL   +   +          ++ A +                 + ++    G     
Sbjct  369  EESGLPKRLLELVDRVGYKEPTPIQRAAIPIAL--------QSRDLIGVAVTGSGKTASF  420

Query  270  QHSGNAQVTQTKFLP-------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
                   + +   +        + P A+++ P+RELA+Q     K+F + +       + 
Sbjct  421  LLPLLVYIAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFTQPLG---FNVVS  477

Query  323  IIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD  382
            I+GG +  +Q   L NG +I++ TPGRL D +    L LSQ  ++++DEAD ++  G+ +
Sbjct  478  IVGGHSLEEQAYSLRNGAEIIIATPGRLVDCIERRILVLSQCCYIIMDEADRMIDLGFEE  537

Query  383  FINRMHNQIP--------------QVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTW  428
             +N++ + +P                    +  Q ++ +AT+ S  V++++ K +  P  
Sbjct  538  PVNKILDALPVTNEKPDSDEAENSAAMRSHRYRQTMMYTATMPSA-VERIARKYLRRPAI  596

Query  429  VDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEA  488
            V +       DTV   V         L     K   R  D+ +    RP           
Sbjct  597  VTIGSAGEAVDTVEQRV--------ELIAGEDKRKKRLADILSSGEFRPP----------  638

Query  489  IKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGD  548
                                 I+F   K +CD + +     G         FS V LHG 
Sbjct  639  --------------------IIVFVNIKRNCDAIAREIKHMG---------FSSVTLHGS  669

Query  549  RKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
            +   +R+  L   + G    L+ TD+A RGID+  V  V+N  +    ++Y HRIGR GR
Sbjct  670  KTQDQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATSIESYTHRIGRTGR  729

Query  609  AERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            A + G+AI+ +  E   V Y +     K   +   +E
Sbjct  730  AGKSGVAITFLGNEDADVMYDLKQMLMKSPISRVPEE  766


 Score = 109 bits (272),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 1/104 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M ++ E G+   + + V+ + +  PT IQ  +IP+ L   D++  A TGSGKT +F +P+
Sbjct  365  MRSWEESGLPKRLLELVDRVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPL  424

Query  61   IQIVYETLK-DQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
            +  + E  + D+ E +K         +   +           F 
Sbjct  425  LVYIAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFT  468


>sp|Q5W5U4|DDX4_BOVIN Probable ATP-dependent RNA helicase DDX4 
OS=Bos taurus OX=9913 GN=DDX4 PE=2 SV=1
Length=729

 Score = 294 bits (753),  Expect = 1e-87, Method: Composition-based stats.
 Identities = 95/385 (25%), Positives = 158/385 (41%), Gaps = 62/385 (16%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNA-----QVTQTKFLP-NAPKALIVEPSRELAE  300
                     +A ++   G          A      +T ++F     P+ +IV P+REL  
Sbjct  322  PIIQGGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELIN  381

Query  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN  360
            Q     ++F        +R ++I GG      +  +  G +I+  TPGRL D++   K+ 
Sbjct  382  QIYLEARKFS---FGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDVIGKEKIG  438

Query  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
            L QV++LVLDEAD +L  G+   + ++ +         ++ Q ++ SAT    ++++L+ 
Sbjct  439  LRQVKYLVLDEADRMLDMGFGPEMKKLISC--PGMPSKEQRQTLMFSATFP-EEIQRLAG  495

Query  421  KIMH-FPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGA  479
            + +     +V +         V   ++ V   + R                         
Sbjct  496  EFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSKR-------------------------  530

Query  480  NSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQ  539
                           E  V  ++    ++ ++F  TK   D +  +  Q+         +
Sbjct  531  ---------------EKLVEILRNIGDERTMVFVETKKKADFIATFLCQE---------K  566

Query  540  FSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNY  599
             S   +HGDR+  ER+Q L  F+ G    L+ T VAARG+DI  V +VIN  LP     Y
Sbjct  567  ISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEY  626

Query  600  VHRIGRVGRAERMGLAISLVATEKE  624
            VHRIGR GR    G AIS    E +
Sbjct  627  VHRIGRTGRCGNTGRAISFFDLESD  651


 Score = 101 bits (252),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 25/106 (24%), Positives = 46/106 (43%), Gaps = 0/106 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E  +   +   + +  +   T +Q  SIP+I GG D++  A+TGSGKT AF +P+
Sbjct  289  ILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTGSGKTAAFLLPI  348

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            +  +          K+ +       +   +     Y     F+ G+
Sbjct  349  LAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGT  394


>sp|Q5WR10|DX39B_CANLF Spliceosome RNA helicase DDX39B OS=Canis 
lupus familiaris OX=9615 GN=DDX39B PE=3 SV=1
Length=428

 Score = 285 bits (730),  Expect = 1e-87, Method: Composition-based stats.
 Identities = 109/509 (21%), Positives = 194/509 (38%), Gaps = 106/509 (21%)

Query  187  TMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACV-----LKNAELKFN  241
              +D     LD ++  V+ +  G D G        +K   +          L   EL   
Sbjct  2    AENDVDNELLDYEEDEVE-TAAGGD-GSEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRA  59

Query  242  FGEEEFKFPPKD----------GFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALI  291
              +  F+ P +           G   L +A  G   K+     A + Q + +      L+
Sbjct  60   IVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGM-GKTAVFVLATLQQLEPVTGQVSVLV  118

Query  292  VEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG-VDIVVGTPGRL  350
            +  +RELA Q     ++F KY+  P ++  +  GG++ +    VL+     IVVGTPGR+
Sbjct  119  MCHTRELAFQISKEYERFSKYM--PNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI  176

Query  351  DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATL  410
              L     LNL  ++  +LDE D +L       + R   +I ++T   K  QV++ SATL
Sbjct  177  LALARNKSLNLKHIKHFILDECDKMLE---QLDMRRDVQEIFRMTPHEK--QVMMFSATL  231

Query  411  HSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVH  470
             S +++ +  K M  P  + +  E  +                     L + +++  D  
Sbjct  232  -SKEIRPVCRKFMQDPMEIFVDDETKL-----------------TLHGLQQYYVKLKDNE  273

Query  471  AKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQG  530
                                  K       +   + +Q +IF ++   C  L Q  ++Q 
Sbjct  274  ----------------------KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ-  310

Query  531  GGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINV  590
                     F  + +H      ER    ++FK    R L+ T++  RG+DI  V    N 
Sbjct  311  --------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNY  362

Query  591  TLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCT  650
             +P++   Y+HR+ R GR    GLAI+ V+ E                            
Sbjct  363  DMPEDSDTYLHRVARAGRFGTKGLAITFVSDE----------------------------  394

Query  651  IWYNEMQLLSEIEEHLNCTISQVEPDIKV  679
               N+ ++L+++++     IS++  +I +
Sbjct  395  ---NDAKILNDVQDRFEVNISELPDEIDI  420


 Score = 77.9 bits (190),  Expect = 8e-14, Method: Composition-based stats.
 Identities = 20/63 (32%), Positives = 37/63 (59%), Gaps = 0/63 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F +  + PE+ +A+ +  +  P+++Q E IP  + G DVL  A++G GKT  F +  +
Sbjct  45   SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL  104

Query  62   QIV  64
            Q +
Sbjct  105  QQL  107


>sp|Q62780|DDX46_RAT Probable ATP-dependent RNA helicase DDX46 
OS=Rattus norvegicus OX=10116 GN=Ddx46 PE=1 SV=1
Length=1032

 Score = 300 bits (769),  Expect = 1e-87, Method: Composition-based stats.
 Identities = 92/455 (20%), Positives = 178/455 (39%), Gaps = 71/455 (16%)

Query  213  GLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHS  272
            G++ +I   +K         ++   +                 + ++K   G  +     
Sbjct  378  GISMKILNSLKKHGYEKPTPIQTQAIPAIMS--------GRDLIGIAKTGSGKTIAFLLP  429

Query  273  G--NAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
               +    ++      P A+I+ P+RELA Q     K+F K +    LR + + GG    
Sbjct  430  MFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLG---LRVVCVYGGTGIS  486

Query  331  DQLSVLENGVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRM  387
            +Q++ L+ G +I+V TPGR+ D+++       NL +V ++VLDEAD +   G+   + R+
Sbjct  487  EQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRI  546

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
             + +          Q ++ SAT     ++ L+ +I+  P  V + G   V   V   V+ 
Sbjct  547  VDNV------RPDRQTVMFSATFPRA-MEALARRILSKPIEVQVGGRSVVCSDVEQQVIV  599

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
            +  +   L       H +                                       +  
Sbjct  600  IEEEKKFLKLLELLGHYQ---------------------------------------ESG  620

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
              IIF   +   D L +  ++           + C+ LHG    ++R   +  FK G  +
Sbjct  621  SVIIFVDKQEHADGLLKDLMRA---------SYPCMSLHGGIDQYDRDSIINDFKNGTCK  671

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             L+ T VAARG+D+  +  V+N + P+  ++YVHR GR GRA   G A + +  ++ +  
Sbjct  672  LLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYA  731

Query  628  YHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEI  662
              +  +            +   + + ++ +   +I
Sbjct  732  GDIIKALELSGTAVPPDLEKLWSDFKDQQKAEGKI  766


 Score = 114 bits (285),  Expect = 9e-25, Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 15/140 (11%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + ++ + G+  +I  ++++  +  PT IQ ++IP I+ G D++  A+TGSGKT AF +P+
Sbjct  371  IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM  430

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI----------GSDGLC  110
             + +     DQ+  ++G+  I    +   +  +        F+           G  G+ 
Sbjct  431  FRHIM----DQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGIS  486

Query  111  CQSREVKE-WHGCRATKGLM  129
             Q  E+K        T G M
Sbjct  487  EQIAELKRGAEIIVCTPGRM  506


>sp|Q5RE47|DX39B_PONAB Spliceosome RNA helicase DDX39B OS=Pongo 
abelii OX=9601 GN=DDX39B PE=2 SV=1
Length=428

 Score = 285 bits (730),  Expect = 1e-87, Method: Composition-based stats.
 Identities = 109/509 (21%), Positives = 193/509 (38%), Gaps = 106/509 (21%)

Query  187  TMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACV-----LKNAELKFN  241
              +D     LD +   V+ +  G D G        +K   +          L   EL   
Sbjct  2    AENDVDNELLDYEDDEVE-TAAGGD-GAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRA  59

Query  242  FGEEEFKFPPKD----------GFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALI  291
              +  F+ P +           G   L +A  G   K+     A + Q + +      L+
Sbjct  60   IVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGM-GKTAVFVLATLQQLEPVTGQVSVLV  118

Query  292  VEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG-VDIVVGTPGRL  350
            +  +RELA Q     ++F KY+  P ++  +  GG++ +    VL+     IVVGTPGR+
Sbjct  119  MCHTRELAFQISKEYERFSKYM--PNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI  176

Query  351  DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATL  410
              L     LNL  ++  +LDE D +L       + R   +I ++T   K  QV++ SATL
Sbjct  177  LALARNKSLNLKHIKHFILDECDKMLE---QLDMRRDVQEIFRMTPHEK--QVMMFSATL  231

Query  411  HSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVH  470
             S +++ +  K M  P  + +  E  +                     L + +++  D  
Sbjct  232  -SKEIRPVCRKFMQDPMEIFVDDETKL-----------------TLHGLQQYYVKLKDNE  273

Query  471  AKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQG  530
                                  K       +   + +Q +IF ++   C  L Q  ++Q 
Sbjct  274  ----------------------KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ-  310

Query  531  GGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINV  590
                     F  + +H      ER    ++FK    R L+ T++  RG+DI  V    N 
Sbjct  311  --------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNY  362

Query  591  TLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCT  650
             +P++   Y+HR+ R GR    GLAI+ V+ E                            
Sbjct  363  DMPEDSDTYLHRVARAGRFGTKGLAITFVSDE----------------------------  394

Query  651  IWYNEMQLLSEIEEHLNCTISQVEPDIKV  679
               N+ ++L+++++     IS++  +I +
Sbjct  395  ---NDAKILNDVQDRFEVNISELPDEIDI  420


 Score = 77.9 bits (190),  Expect = 8e-14, Method: Composition-based stats.
 Identities = 20/63 (32%), Positives = 37/63 (59%), Gaps = 0/63 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F +  + PE+ +A+ +  +  P+++Q E IP  + G DVL  A++G GKT  F +  +
Sbjct  45   SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL  104

Query  62   QIV  64
            Q +
Sbjct  105  QQL  107


>sp|Q29024|DX39B_PIG Spliceosome RNA helicase DDX39B OS=Sus scrofa 
OX=9823 GN=DDX39B PE=3 SV=2
Length=428

 Score = 285 bits (730),  Expect = 1e-87, Method: Composition-based stats.
 Identities = 109/509 (21%), Positives = 193/509 (38%), Gaps = 106/509 (21%)

Query  187  TMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACV-----LKNAELKFN  241
              +D     LD +   V+ +  G D G        +K   +          L   EL   
Sbjct  2    AENDVDNELLDYEDDEVE-TAAGGD-GAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRA  59

Query  242  FGEEEFKFPPKD----------GFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALI  291
              +  F+ P +           G   L +A  G   K+     A + Q + +      L+
Sbjct  60   IVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGM-GKTAVFVLATLQQLEPVTGQVSVLV  118

Query  292  VEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG-VDIVVGTPGRL  350
            +  +RELA Q     ++F KY+  P ++  +  GG++ +    VL+     IVVGTPGR+
Sbjct  119  MCHTRELAFQISKEYERFSKYM--PNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI  176

Query  351  DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATL  410
              L     LNL  ++  +LDE D +L       + R   +I ++T   K  QV++ SATL
Sbjct  177  LALARNKSLNLKHIKHFILDECDKMLE---QLDMRRDVQEIFRMTPHEK--QVMMFSATL  231

Query  411  HSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVH  470
             S +++ +  K M  P  + +  E  +                     L + +++  D  
Sbjct  232  -SKEIRPVCRKFMQDPMEIFVDDETKL-----------------TLHGLQQYYVKLKDNE  273

Query  471  AKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQG  530
                                  K       +   + +Q +IF ++   C  L Q  ++Q 
Sbjct  274  ----------------------KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ-  310

Query  531  GGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINV  590
                     F  + +H      ER    ++FK    R L+ T++  RG+DI  V    N 
Sbjct  311  --------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNY  362

Query  591  TLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCT  650
             +P++   Y+HR+ R GR    GLAI+ V+ E                            
Sbjct  363  DMPEDSDTYLHRVARAGRFGTKGLAITFVSDE----------------------------  394

Query  651  IWYNEMQLLSEIEEHLNCTISQVEPDIKV  679
               N+ ++L+++++     IS++  +I +
Sbjct  395  ---NDAKILNDVQDRFEVNISELPDEIDI  420


 Score = 77.9 bits (190),  Expect = 8e-14, Method: Composition-based stats.
 Identities = 20/63 (32%), Positives = 37/63 (59%), Gaps = 0/63 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F +  + PE+ +A+ +  +  P+++Q E IP  + G DVL  A++G GKT  F +  +
Sbjct  45   SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL  104

Query  62   QIV  64
            Q +
Sbjct  105  QQL  107


>sp|P60024|DX39B_PANTR Spliceosome RNA helicase DDX39B OS=Pan 
troglodytes OX=9598 GN=DDX39B PE=3 SV=1
Length=428

 Score = 285 bits (730),  Expect = 1e-87, Method: Composition-based stats.
 Identities = 109/509 (21%), Positives = 193/509 (38%), Gaps = 106/509 (21%)

Query  187  TMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACV-----LKNAELKFN  241
              +D     LD +   V+ +  G D G        +K   +          L   EL   
Sbjct  2    AENDVDNELLDYEDDEVE-TAAGGD-GAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRA  59

Query  242  FGEEEFKFPPKD----------GFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALI  291
              +  F+ P +           G   L +A  G   K+     A + Q + +      L+
Sbjct  60   IVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGM-GKTAVFVLATLQQLEPVTGQVSVLV  118

Query  292  VEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG-VDIVVGTPGRL  350
            +  +RELA Q     ++F KY+  P ++  +  GG++ +    VL+     IVVGTPGR+
Sbjct  119  MCHTRELAFQISKEYERFSKYM--PNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI  176

Query  351  DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATL  410
              L     LNL  ++  +LDE D +L       + R   +I ++T   K  QV++ SATL
Sbjct  177  LALARNKSLNLKHIKHFILDECDKMLE---QLDMRRDVQEIFRMTPHEK--QVMMFSATL  231

Query  411  HSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVH  470
             S +++ +  K M  P  + +  E  +                     L + +++  D  
Sbjct  232  -SKEIRPVCRKFMQDPMEIFVDDETKL-----------------TLHGLQQYYVKLKDNE  273

Query  471  AKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQG  530
                                  K       +   + +Q +IF ++   C  L Q  ++Q 
Sbjct  274  ----------------------KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ-  310

Query  531  GGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINV  590
                     F  + +H      ER    ++FK    R L+ T++  RG+DI  V    N 
Sbjct  311  --------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNY  362

Query  591  TLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCT  650
             +P++   Y+HR+ R GR    GLAI+ V+ E                            
Sbjct  363  DMPEDSDTYLHRVARAGRFGTKGLAITFVSDE----------------------------  394

Query  651  IWYNEMQLLSEIEEHLNCTISQVEPDIKV  679
               N+ ++L+++++     IS++  +I +
Sbjct  395  ---NDAKILNDVQDRFEVNISELPDEIDI  420


 Score = 77.9 bits (190),  Expect = 8e-14, Method: Composition-based stats.
 Identities = 20/63 (32%), Positives = 37/63 (59%), Gaps = 0/63 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F +  + PE+ +A+ +  +  P+++Q E IP  + G DVL  A++G GKT  F +  +
Sbjct  45   SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL  104

Query  62   QIV  64
            Q +
Sbjct  105  QQL  107


>sp|Q5TM17|DX39B_MACMU Spliceosome RNA helicase DDX39B OS=Macaca 
mulatta OX=9544 GN=DDX39B PE=3 SV=1
Length=428

 Score = 285 bits (730),  Expect = 1e-87, Method: Composition-based stats.
 Identities = 109/509 (21%), Positives = 193/509 (38%), Gaps = 106/509 (21%)

Query  187  TMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACV-----LKNAELKFN  241
              +D     LD +   V+ +  G D G        +K   +          L   EL   
Sbjct  2    AENDVDNELLDYEDDEVE-TAAGGD-GAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRA  59

Query  242  FGEEEFKFPPKD----------GFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALI  291
              +  F+ P +           G   L +A  G   K+     A + Q + +      L+
Sbjct  60   IVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGM-GKTAVFVLATLQQLEPVTGQVSVLV  118

Query  292  VEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG-VDIVVGTPGRL  350
            +  +RELA Q     ++F KY+  P ++  +  GG++ +    VL+     IVVGTPGR+
Sbjct  119  MCHTRELAFQISKEYERFSKYM--PNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI  176

Query  351  DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATL  410
              L     LNL  ++  +LDE D +L       + R   +I ++T   K  QV++ SATL
Sbjct  177  LALARNKSLNLKHIKHFILDECDKMLE---QLDMRRDVQEIFRMTPHEK--QVMMFSATL  231

Query  411  HSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVH  470
             S +++ +  K M  P  + +  E  +                     L + +++  D  
Sbjct  232  -SKEIRPVCRKFMQDPMEIFVDDETKL-----------------TLHGLQQYYVKLKDNE  273

Query  471  AKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQG  530
                                  K       +   + +Q +IF ++   C  L Q  ++Q 
Sbjct  274  ----------------------KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ-  310

Query  531  GGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINV  590
                     F  + +H      ER    ++FK    R L+ T++  RG+DI  V    N 
Sbjct  311  --------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNY  362

Query  591  TLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCT  650
             +P++   Y+HR+ R GR    GLAI+ V+ E                            
Sbjct  363  DMPEDSDTYLHRVARAGRFGTKGLAITFVSDE----------------------------  394

Query  651  IWYNEMQLLSEIEEHLNCTISQVEPDIKV  679
               N+ ++L+++++     IS++  +I +
Sbjct  395  ---NDAKILNDVQDRFEVNISELPDEIDI  420


 Score = 77.9 bits (190),  Expect = 8e-14, Method: Composition-based stats.
 Identities = 20/63 (32%), Positives = 37/63 (59%), Gaps = 0/63 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F +  + PE+ +A+ +  +  P+++Q E IP  + G DVL  A++G GKT  F +  +
Sbjct  45   SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL  104

Query  62   QIV  64
            Q +
Sbjct  105  QQL  107


>sp|Q13838|DX39B_HUMAN Spliceosome RNA helicase DDX39B OS=Homo 
sapiens OX=9606 GN=DDX39B PE=1 SV=1
Length=428

 Score = 285 bits (730),  Expect = 1e-87, Method: Composition-based stats.
 Identities = 109/509 (21%), Positives = 193/509 (38%), Gaps = 106/509 (21%)

Query  187  TMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACV-----LKNAELKFN  241
              +D     LD +   V+ +  G D G        +K   +          L   EL   
Sbjct  2    AENDVDNELLDYEDDEVE-TAAGGD-GAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRA  59

Query  242  FGEEEFKFPPKD----------GFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALI  291
              +  F+ P +           G   L +A  G   K+     A + Q + +      L+
Sbjct  60   IVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGM-GKTAVFVLATLQQLEPVTGQVSVLV  118

Query  292  VEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG-VDIVVGTPGRL  350
            +  +RELA Q     ++F KY+  P ++  +  GG++ +    VL+     IVVGTPGR+
Sbjct  119  MCHTRELAFQISKEYERFSKYM--PNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI  176

Query  351  DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATL  410
              L     LNL  ++  +LDE D +L       + R   +I ++T   K  QV++ SATL
Sbjct  177  LALARNKSLNLKHIKHFILDECDKMLE---QLDMRRDVQEIFRMTPHEK--QVMMFSATL  231

Query  411  HSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVH  470
             S +++ +  K M  P  + +  E  +                     L + +++  D  
Sbjct  232  -SKEIRPVCRKFMQDPMEIFVDDETKL-----------------TLHGLQQYYVKLKDNE  273

Query  471  AKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQG  530
                                  K       +   + +Q +IF ++   C  L Q  ++Q 
Sbjct  274  ----------------------KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ-  310

Query  531  GGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINV  590
                     F  + +H      ER    ++FK    R L+ T++  RG+DI  V    N 
Sbjct  311  --------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNY  362

Query  591  TLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCT  650
             +P++   Y+HR+ R GR    GLAI+ V+ E                            
Sbjct  363  DMPEDSDTYLHRVARAGRFGTKGLAITFVSDE----------------------------  394

Query  651  IWYNEMQLLSEIEEHLNCTISQVEPDIKV  679
               N+ ++L+++++     IS++  +I +
Sbjct  395  ---NDAKILNDVQDRFEVNISELPDEIDI  420


 Score = 77.9 bits (190),  Expect = 8e-14, Method: Composition-based stats.
 Identities = 20/63 (32%), Positives = 37/63 (59%), Gaps = 0/63 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F +  + PE+ +A+ +  +  P+++Q E IP  + G DVL  A++G GKT  F +  +
Sbjct  45   SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL  104

Query  62   QIV  64
            Q +
Sbjct  105  QQL  107


>sp|Q58Z64|DHH1_CRYNH ATP-dependent RNA helicase VAD1 OS=Cryptococcus 
neoformans var. grubii serotype A (strain H99 / ATCC 
208821 / CBS 10515 / FGSC 9487) OX=235443 GN=VAD1 PE=1 SV=1
Length=616

 Score = 291 bits (745),  Expect = 1e-87, Method: Composition-based stats.
 Identities = 109/427 (26%), Positives = 173/427 (41%), Gaps = 70/427 (16%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             +D GL  E+   +          ++   +               G   L++A +G   K
Sbjct  38   FEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALT----------GRDILARAKNG-TGK  86

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
            +       + +     +  +ALI+ P+RELA QT    K    +I  P L+ ++  GG  
Sbjct  87   TASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTLGAHI--PNLQVMITTGGTT  144

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
             RD +  L+  V I+VGTPGR+ DL S G   L++    V+DEAD LLS+ +   I +  
Sbjct  145  LRDDILRLQQPVHILVGTPGRILDLGSKGIAGLNKCGIFVMDEADKLLSEDFMPVIEQTL  204

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
               PQ        QV++ SAT   + VK+  ++ M  P  ++L  E ++     +     
Sbjct  205  ALCPQ------ERQVMLFSATFP-WTVKEFKDQHMVQPYEINLMDELTLKGVTQYYAYVE  257

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
              +                                         K         + +++Q
Sbjct  258  ESQ-----------------------------------------KVHCLNTLFSKLQINQ  276

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
            +IIFC +    + L +   + G         +SC   H   +   R +    F+ G  R 
Sbjct  277  SIIFCNSTNRVELLAKKVTELG---------YSCFYSHAKMQQAHRNRVFHDFRNGMTRN  327

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            L+C+D+  RGIDI  V  VIN   P   ++Y+HRIGR GR   +GLAISL+  E     Y
Sbjct  328  LVCSDLLTRGIDIQAVNVVINFDFPRTAESYLHRIGRSGRFGHLGLAISLLTLEDRHNLY  387

Query  629  HVCSSRG  635
             + S  G
Sbjct  388  RIESELG  394


 Score = 100 bits (250),  Expect = 8e-21, Method: Composition-based stats.
 Identities = 22/93 (24%), Positives = 41/93 (44%), Gaps = 9/93 (10%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F + G+  E+   +    +  P+ IQ ++IP+ L G D+L  A+ G+GKT +F IP +
Sbjct  36   SRFEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALTGRDILARAKNGTGKTASFIIPTL  95

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
              +  +L   Q                 +  + 
Sbjct  96   NRINTSLSHIQ---------ALILVPTRELALQ  119


>sp|Q6C024|PRP28_YARLI Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) 
OX=284591 GN=PRP28 PE=3 SV=1
Length=575

 Score = 290 bits (742),  Expect = 1e-87, Method: Composition-based stats.
 Identities = 90/439 (21%), Positives = 174/439 (40%), Gaps = 78/439 (18%)

Query  218  IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQV  277
            +   +          ++ A +    G            + +++   G          + +
Sbjct  174  VRDTISRMGYKEPTPIQRAAIPIALG--------IRDVIGVAETGSGKTASFLIPLISYI  225

Query  278  TQTKFLP-----NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQ  332
             +   L      N P  LI+ P+RELA Q  +      K+      + + ++GG +A++Q
Sbjct  226  CELPKLDERSKVNGPYGLILAPTRELAMQIKDEAV---KFCAPLGFKVVSVVGGYSAQEQ  282

Query  333  LSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP  392
               ++ G +++V TPGRL D++    L L+Q  ++V+DEAD ++  G+ + + ++   +P
Sbjct  283  ALAVQEGAELIVATPGRLLDVIDRRLLVLNQCCYVVMDEADRMVDMGFEEQVQKVLASLP  342

Query  393  QVT--------------SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVP  438
                             S  +  Q ++ +AT+    ++KL++K +  P  V +       
Sbjct  343  SSNAKPDSDEAENLAAVSTRRYRQTMMYTATMPVA-IEKLAKKYLRRPGIVTIGSAGQAG  401

Query  439  DTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAV  498
             TV  +V  +N    R                                      K     
Sbjct  402  STVTQLVEFLNTDEKR--------------------------------------KRRLLD  423

Query  499  RAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNL  558
               K       ++F   K DC+ +    +  G         +    +HG ++  +R+Q +
Sbjct  424  IISKRQYRPPIVVFLNYKRDCEAVSDALVAAG---------WRTAIIHGGKQQEQREQAV  474

Query  559  ERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            +  K+G V  L+ TDVA RG+DI  V  V+N  + +  ++Y HRIGR GRA + G A++ 
Sbjct  475  QHLKRGAVDVLVATDVAGRGLDIPNVSLVVNFQMANNIESYTHRIGRTGRAGKRGTAVTF  534

Query  619  VATEKEKVWYHVCSSRGKG  637
            +  E + V + +     + 
Sbjct  535  LGQEDDDVLFELKQMISRS  553


 Score = 102 bits (255),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 49/103 (48%), Gaps = 2/103 (2%)

Query  1    MAAFSEMGVMPEIAQ-AVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
            + +++E   +P I +  +  M +  PT IQ  +IP+ LG  DV+  AETGSGKT +F IP
Sbjct  161  LRSWNECKEIPGIVRDTISRMGYKEPTPIQRAAIPIALGIRDVIGVAETGSGKTASFLIP  220

Query  60   VIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            +I  + E  K   E  K         +   +  M   D    F
Sbjct  221  LISYICELPK-LDERSKVNGPYGLILAPTRELAMQIKDEAVKF  262


>sp|Q810A7|DDX42_MOUSE ATP-dependent RNA helicase DDX42 OS=Mus 
musculus OX=10090 GN=Ddx42 PE=1 SV=3
Length=929

 Score = 298 bits (764),  Expect = 1e-87, Method: Composition-based stats.
 Identities = 96/390 (25%), Positives = 156/390 (40%), Gaps = 59/390 (15%)

Query  247  FKFPPKDGFVALSKAPDGYIVKS-QHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLN  304
                     + ++K   G             + Q +  P + P A+IV P+REL +Q   
Sbjct  285  PVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHA  344

Query  305  NIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQV  364
              K+F K  +   LR + + GG +  +Q   L+ G +IVV TPGRL D V     NL +V
Sbjct  345  ECKRFGKAYN---LRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRV  401

Query  365  RFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH  424
             +LV DEAD +   G+   +  + + +          Q ++ SAT     ++KL+  I+ 
Sbjct  402  SYLVFDEADRMFDMGFEYQVRSIASHV------RPDRQTLLFSATF-RKKIEKLARDILI  454

Query  425  FPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEM  484
             P  V         + V  +V  ++    + W  L +                       
Sbjct  455  DPIRVVQGDIGEANEDVTQIVEILHSGPSK-WNWLTR-----------------------  490

Query  485  WSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC  544
                          R ++       ++F   K + + L     Q+G          +   
Sbjct  491  --------------RLVEFTSSGSVLLFVTKKANAEELASNLKQEG---------HNLGL  527

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            LHGD    ER + +  FKK D+  L+ TDVAARG+DI  +  VIN  +  +   + HRIG
Sbjct  528  LHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIG  587

Query  605  RVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            R GRA   G+A +L+  +       +  + 
Sbjct  588  RTGRAGEKGVAYTLLTPKDSNFAGDLVRNL  617


 Score = 107 bits (267),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 4/104 (4%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            ++F+  G   ++   + + ++  PT IQ + +P+ L G D++  A+TGSGKT AF  P++
Sbjct  253  SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML  312

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG  105
              +     DQ+E + G   I        +     +     F   
Sbjct  313  IHIM----DQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKA  352


>sp|Q7L014|DDX46_HUMAN Probable ATP-dependent RNA helicase DDX46 
OS=Homo sapiens OX=9606 GN=DDX46 PE=1 SV=2
Length=1031

 Score = 300 bits (768),  Expect = 1e-87, Method: Composition-based stats.
 Identities = 92/455 (20%), Positives = 178/455 (39%), Gaps = 71/455 (16%)

Query  213  GLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHS  272
            G++ +I   +K         ++   +                 + ++K   G  +     
Sbjct  378  GISMKILNSLKKHGYEKPTPIQTQAIPAIMS--------GRDLIGIAKTGSGKTIAFLLP  429

Query  273  G--NAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
               +    ++      P A+I+ P+RELA Q     K+F K +    LR + + GG    
Sbjct  430  MFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLG---LRVVCVYGGTGIS  486

Query  331  DQLSVLENGVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRM  387
            +Q++ L+ G +I+V TPGR+ D+++       NL +V ++VLDEAD +   G+   + R+
Sbjct  487  EQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRI  546

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
             + +          Q ++ SAT     ++ L+ +I+  P  V + G   V   V   V+ 
Sbjct  547  VDNV------RPDRQTVMFSATFPRA-MEALARRILSKPIEVQVGGRSVVCSDVEQQVIV  599

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
            +  +   L       H +                                       +  
Sbjct  600  IEEEKKFLKLLELLGHYQ---------------------------------------ESG  620

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
              IIF   +   D L +  ++           + C+ LHG    ++R   +  FK G  +
Sbjct  621  SVIIFVDKQEHADGLLKDLMRA---------SYPCMSLHGGIDQYDRDSIINDFKNGTCK  671

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             L+ T VAARG+D+  +  V+N + P+  ++YVHR GR GRA   G A + +  ++ +  
Sbjct  672  LLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYA  731

Query  628  YHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEI  662
              +  +            +   + + ++ +   +I
Sbjct  732  GDIIKALELSGTAVPPDLEKLWSDFKDQQKAEGKI  766


 Score = 114 bits (285),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 15/140 (11%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + ++ + G+  +I  ++++  +  PT IQ ++IP I+ G D++  A+TGSGKT AF +P+
Sbjct  371  IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM  430

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI----------GSDGLC  110
             + +     DQ+  ++G+  I    +   +  +        F+           G  G+ 
Sbjct  431  FRHIM----DQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGIS  486

Query  111  CQSREVKE-WHGCRATKGLM  129
             Q  E+K        T G M
Sbjct  487  EQIAELKRGAEIIVCTPGRM  506


>sp|O00148|DX39A_HUMAN ATP-dependent RNA helicase DDX39A OS=Homo 
sapiens OX=9606 GN=DDX39A PE=1 SV=2
Length=427

 Score = 285 bits (729),  Expect = 1e-87, Method: Composition-based stats.
 Identities = 95/382 (25%), Positives = 157/382 (41%), Gaps = 58/382 (15%)

Query  254  GFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI  313
            G   L +A  G   K+     A + Q + +      L++  +RELA Q     ++F KY+
Sbjct  81   GMDVLCQAKSGM-GKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYM  139

Query  314  DNPKLRELLIIGGVAARDQLSVLENG-VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
              P ++  +  GG++ +    VL+     +VVGTPGR+  LV     +L  V+  VLDE 
Sbjct  140  --PSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDEC  197

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D +L       + R   +I ++T   K  Q ++ SATL S D++ +  K M  P  V + 
Sbjct  198  DKMLE---QLDMRRDVQEIFRLTPHEK--QCMMFSATL-SKDIRPVCRKFMQDPMEVFVD  251

Query  433  GEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKIL  492
             E  +                     L + +++  D                        
Sbjct  252  DETKL-----------------TLHGLQQYYVKLKDSE----------------------  272

Query  493  KGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPH  552
            K       +   + +Q IIF ++   C  L Q  ++Q          F  + +H      
Sbjct  273  KNRKLFDLLDVLEFNQVIIFVKSVQRCMALAQLLVEQ---------NFPAIAIHRGMAQE  323

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM  612
            ER    ++FK    R L+ T++  RG+DI  V  V N  +P++   Y+HR+ R GR    
Sbjct  324  ERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK  383

Query  613  GLAISLVATEKEKVWYHVCSSR  634
            GLAI+ V+ E +    +    R
Sbjct  384  GLAITFVSDENDAKILNDVQDR  405


 Score = 78.2 bits (191),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 20/63 (32%), Positives = 37/63 (59%), Gaps = 0/63 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F +  + PE+ +A+ +  +  P+++Q E IP  + G DVL  A++G GKT  F +  +
Sbjct  44   SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL  103

Query  62   QIV  64
            Q +
Sbjct  104  QQI  106


>sp|Q0UWC8|PRP28_PHANO Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 
/ FGSC 10173) OX=321614 GN=PRP28 PE=3 SV=1
Length=746

 Score = 294 bits (753),  Expect = 1e-87, Method: Composition-based stats.
 Identities = 98/459 (21%), Positives = 182/459 (40%), Gaps = 79/459 (17%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            +N ++ GL  ++   +++        ++ A +                 + ++    G  
Sbjct  327  RNWQESGLPDKVLRLVEHVGYAEPSAVQRAAIPIAL--------QCRDLIGVAVTGSGKT  378

Query  267  VKSQHSGNAQVTQTKFL-----PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLREL  321
                      ++Q   L      + P A+++ P+RELA+Q     ++F   +        
Sbjct  379  ASFVLPLLVYISQLPPLGPSNRADGPYAIVLAPTRELAQQIEVETRKFAAPLG---FNTA  435

Query  322  LIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYS  381
            +I+GG +  +Q   + +G +IV+ TPGRL D +    L LSQ  ++++DEAD ++  G+ 
Sbjct  436  VIVGGHSIEEQAFQMRDGAEIVIATPGRLVDCIERRMLVLSQCTYVIMDEADRMIDMGFE  495

Query  382  DFINRMHNQIP--------------QVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPT  427
            + +N++ + +P                   G   Q ++ +AT+ +  V++++ K +  P 
Sbjct  496  EPVNKILDALPVTNEKPDSDAAEDPNAMKRGMYRQTMMYTATMPTA-VERIARKYLRRPA  554

Query  428  WVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSE  487
             V +       +TV   V  +  +  R                                 
Sbjct  555  IVTIGNVGEAVETVEQRVEHIQGEEKR---------------------------------  581

Query  488  AIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHG  547
                 K                I+F   K +CD + +     G         FS V LHG
Sbjct  582  -----KKRLQEILNSGEFTPPIIVFVNIKRNCDAIARDIKNMG---------FSSVTLHG  627

Query  548  DRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVG  607
             +   +R+  L + ++  V  L+ TD+A RGIDI  V  V+N  +    ++Y HRIGR G
Sbjct  628  SKTQEQREAALAQLREHRVDVLVATDLAGRGIDITDVSLVVNFNMATSIESYTHRIGRTG  687

Query  608  RAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKED  646
            RA + G+AI+    E   V Y +     K    +++ ED
Sbjct  688  RAGKSGVAITFWGNEDADVLYDLKQMLTKSQI-SKVPED  725


 Score = 93.7 bits (231),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 1/104 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M  + E G+  ++ + VE + +  P+ +Q  +IP+ L   D++  A TGSGKT +F +P+
Sbjct  326  MRNWQESGLPDKVLRLVEHVGYAEPSAVQRAAIPIALQCRDLIGVAVTGSGKTASFVLPL  385

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            +  + + L       +         +   +           FA 
Sbjct  386  LVYISQ-LPPLGPSNRADGPYAIVLAPTRELAQQIEVETRKFAA  428


>sp|Q63413|DX39B_RAT Spliceosome RNA helicase Ddx39b OS=Rattus 
norvegicus OX=10116 GN=Ddx39b PE=2 SV=3
Length=428

 Score = 285 bits (729),  Expect = 1e-87, Method: Composition-based stats.
 Identities = 109/509 (21%), Positives = 193/509 (38%), Gaps = 106/509 (21%)

Query  187  TMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACV-----LKNAELKFN  241
              +D     LD +   V+ +  G D G        +K   +          L   EL   
Sbjct  2    AENDVDNELLDYEDDEVE-TAAGAD-GTEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRA  59

Query  242  FGEEEFKFPPKD----------GFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALI  291
              +  F+ P +           G   L +A  G   K+     A + Q + +      L+
Sbjct  60   IVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGM-GKTAVFVLATLQQLEPVTGQVSVLV  118

Query  292  VEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG-VDIVVGTPGRL  350
            +  +RELA Q     ++F KY+  P ++  +  GG++ +    VL+     IVVGTPGR+
Sbjct  119  MCHTRELAFQISKEYERFSKYM--PNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI  176

Query  351  DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATL  410
              L     LNL  ++  +LDE D +L       + R   +I ++T   K  QV++ SATL
Sbjct  177  LALARNKSLNLKHIKHFILDECDKMLE---QLDMRRDVQEIFRMTPHEK--QVMMFSATL  231

Query  411  HSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVH  470
             S +++ +  K M  P  + +  E  +                     L + +++  D  
Sbjct  232  -SKEIRPVCRKFMQDPMEIFVDDETKL-----------------TLHGLQQYYVKLKDNE  273

Query  471  AKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQG  530
                                  K       +   + +Q +IF ++   C  L Q  ++Q 
Sbjct  274  ----------------------KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ-  310

Query  531  GGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINV  590
                     F  + +H      ER    ++FK    R L+ T++  RG+DI  V    N 
Sbjct  311  --------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNY  362

Query  591  TLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCT  650
             +P++   Y+HR+ R GR    GLAI+ V+ E                            
Sbjct  363  DMPEDSDTYLHRVARAGRFGTKGLAITFVSDE----------------------------  394

Query  651  IWYNEMQLLSEIEEHLNCTISQVEPDIKV  679
               N+ ++L+++++     IS++  +I +
Sbjct  395  ---NDAKILNDVQDRFEVNISELPDEIDI  420


 Score = 77.9 bits (190),  Expect = 8e-14, Method: Composition-based stats.
 Identities = 20/63 (32%), Positives = 37/63 (59%), Gaps = 0/63 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F +  + PE+ +A+ +  +  P+++Q E IP  + G DVL  A++G GKT  F +  +
Sbjct  45   SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL  104

Query  62   QIV  64
            Q +
Sbjct  105  QQL  107


>sp|Q9Z1N5|DX39B_MOUSE Spliceosome RNA helicase Ddx39b OS=Mus 
musculus OX=10090 GN=Ddx39b PE=1 SV=1
Length=428

 Score = 285 bits (729),  Expect = 1e-87, Method: Composition-based stats.
 Identities = 109/509 (21%), Positives = 193/509 (38%), Gaps = 106/509 (21%)

Query  187  TMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACV-----LKNAELKFN  241
              +D     LD +   V+ +  G D G        +K   +          L   EL   
Sbjct  2    AENDVDNELLDYEDDEVE-TAAGAD-GTEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRA  59

Query  242  FGEEEFKFPPKD----------GFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALI  291
              +  F+ P +           G   L +A  G   K+     A + Q + +      L+
Sbjct  60   IVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGM-GKTAVFVLATLQQLEPVTGQVSVLV  118

Query  292  VEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG-VDIVVGTPGRL  350
            +  +RELA Q     ++F KY+  P ++  +  GG++ +    VL+     IVVGTPGR+
Sbjct  119  MCHTRELAFQISKEYERFSKYM--PNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI  176

Query  351  DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATL  410
              L     LNL  ++  +LDE D +L       + R   +I ++T   K  QV++ SATL
Sbjct  177  LALARNKSLNLKHIKHFILDECDKMLE---QLDMRRDVQEIFRMTPHEK--QVMMFSATL  231

Query  411  HSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVH  470
             S +++ +  K M  P  + +  E  +                     L + +++  D  
Sbjct  232  -SKEIRPVCRKFMQDPMEIFVDDETKL-----------------TLHGLQQYYVKLKDNE  273

Query  471  AKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQG  530
                                  K       +   + +Q +IF ++   C  L Q  ++Q 
Sbjct  274  ----------------------KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ-  310

Query  531  GGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINV  590
                     F  + +H      ER    ++FK    R L+ T++  RG+DI  V    N 
Sbjct  311  --------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNY  362

Query  591  TLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCT  650
             +P++   Y+HR+ R GR    GLAI+ V+ E                            
Sbjct  363  DMPEDSDTYLHRVARAGRFGTKGLAITFVSDE----------------------------  394

Query  651  IWYNEMQLLSEIEEHLNCTISQVEPDIKV  679
               N+ ++L+++++     IS++  +I +
Sbjct  395  ---NDAKILNDVQDRFEVNISELPDEIDI  420


 Score = 77.9 bits (190),  Expect = 8e-14, Method: Composition-based stats.
 Identities = 20/63 (32%), Positives = 37/63 (59%), Gaps = 0/63 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F +  + PE+ +A+ +  +  P+++Q E IP  + G DVL  A++G GKT  F +  +
Sbjct  45   SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL  104

Query  62   QIV  64
            Q +
Sbjct  105  QQL  107


>sp|Q6BZ77|DBP3_DEBHA ATP-dependent RNA helicase DBP3 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP3 PE=3 SV=1
Length=527

 Score = 288 bits (737),  Expect = 2e-87, Method: Composition-based stats.
 Identities = 102/382 (27%), Positives = 165/382 (43%), Gaps = 60/382 (16%)

Query  256  VALSKAPDGYIVKS-QHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYID  314
            + +++   G        + N  +T  K      K L + P+RELA Q  +N+        
Sbjct  158  IGVAETGSGKTFAFGVPAINNILTHDK---KGLKVLCISPTRELALQIYDNLVDL---TA  211

Query  315  NPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADG  374
            N  L+ + + GGV+  +Q+S L N   +VV TPGRL DL++ G L+L  + +LVLDEAD 
Sbjct  212  NTPLKCVAVYGGVSKHEQVSSLRN-ASVVVATPGRLIDLLNDGALSLDSIEYLVLDEADR  270

Query  375  LLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE  434
            +L +G+   I  +  Q           Q ++ +AT    +V++L+   M+ P  V +   
Sbjct  271  MLEKGFEQDIKSVMQQTNHA-----NRQTLMFTATWPK-EVRELASTFMNSPVKVSIGDR  324

Query  435  D--SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKIL  492
            +  S    +  +V  + P                                    +  K L
Sbjct  325  NELSANKRITQIVEVIEP-----------------------------------YDKEKKL  349

Query  493  KGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPH  552
                       +K D+ +IF   K +   +E   ++         + F    +HGD    
Sbjct  350  LSLLRKYQSGSNKDDKVLIFALYKKEATRIENLLVR---------NSFKVSAVHGDLSQQ  400

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM  612
            +R   L  FK G    L+ TDVAARG+DI  V  VIN+T P   ++YVHRIGR GRA + 
Sbjct  401  QRTSALGAFKAGKTTLLLATDVAARGLDIPNVKVVINLTFPLTVEDYVHRIGRTGRAGQT  460

Query  613  GLAISLVATEKEKVWYHVCSSR  634
            G+A +L    ++ +   + +  
Sbjct  461  GIAHTLFTEHEKHLSGALMNVL  482


 Score = 96.7 bits (239),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 54/136 (40%), Gaps = 20/136 (15%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F ++ +   IA  + +  +  PT IQA S P +L G DV+  AETGSGKT AF +P I  
Sbjct  121  FDQIDLDSRIASVISK--FPTPTPIQAVSWPYLLSGKDVIGVAETGSGKTFAFGVPAINN  178

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC----------QS  113
            +    K      KG   +    S   +  +  YD        +   C           Q 
Sbjct  179  ILTHDK------KGLKVLC--ISPTRELALQIYDNLVDLTANTPLKCVAVYGGVSKHEQV  230

Query  114  REVKEWHGCRATKGLM  129
              ++      AT G +
Sbjct  231  SSLRNASVVVATPGRL  246


>sp|A7TJM9|DRS1_VANPO ATP-dependent RNA helicase DRS1 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=DRS1 PE=3 SV=1
Length=752

 Score = 294 bits (753),  Expect = 2e-87, Method: Composition-based stats.
 Identities = 95/486 (20%), Positives = 183/486 (38%), Gaps = 67/486 (14%)

Query  200  KGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALS  259
            +           L L+  +   + +        +++A +                 +A +
Sbjct  224  EATSTVHSTFNSLTLSRPVLKGLSDLGYTKPSPIQSATIPIGLS--------GKDIIAGA  275

Query  260  KAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLR  319
                G           ++        + + +++ P+RELA Q  +  K+  KY+    L 
Sbjct  276  VTGSGKTAAFMIPIIERLLYKPAKVASTRVIVLTPTRELAIQIADVGKKIGKYVSG--LT  333

Query  320  ELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQ  378
              L +GG+  R Q   L+   DIV+ TPGR  D V ++   N+  V  LV+DEAD +L +
Sbjct  334  FGLAVGGLNLRQQEQELKTRPDIVIATPGRFIDHVRNSSSFNVDSVEVLVMDEADRMLEE  393

Query  379  GYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVP  438
            G+ + +N +   +P       + Q ++ SAT++S  +K L    +  P  + +       
Sbjct  394  GFQEELNEILTLLP------SKRQTLLFSATMNSR-IKSLISLSLRKPVRIMINPPKQAA  446

Query  439  DTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAV  498
              +    V +  +       L                                    Y +
Sbjct  447  ARLTQEFVRIRKRDHLKPALLF-----------------------------------YLI  471

Query  499  RAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNL  558
            R +      + ++F   K     L       G              LHG     +R Q++
Sbjct  472  RKLDGTGQKRIVVFVARKEMAHKLRIILGLLG---------MKVGELHGSLTQEQRLQSV  522

Query  559  ERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
              FK  +V  LICTD+A+RG+DI  +  VIN  +P   + Y+HR+GR  RA R G +++ 
Sbjct  523  NNFKSLEVPVLICTDLASRGLDIPKIEVVINFDMPKSYEIYLHRVGRTARAGREGRSVTF  582

Query  619  V--ATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPD  676
            V  +++   +      S  +   ++   +     + + +++  +++ E    TI  +  +
Sbjct  583  VGESSQDRSIVRSAIKSVEE---SSSKNKAVSRNVEWTQIEETNKLVESFGETIDDILVE  639

Query  677  IKVPVD  682
             K   +
Sbjct  640  EKQEKE  645


 Score = 105 bits (262),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 6/108 (6%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F+ + +   + + + ++ +  P+ IQ+ +IP+ L G D++  A TGSGKT AF IP+I
Sbjct  231  STFNSLTLSRPVLKGLSDLGYTKPSPIQSATIPIGLSGKDIIAGAVTGSGKTAAFMIPII  290

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGL  109
            + +           K  +T     +   +  +   D G        GL
Sbjct  291  ERLLYKP------AKVASTRVIVLTPTRELAIQIADVGKKIGKYVSGL  332


>sp|Q569Z5|DDX46_MOUSE Probable ATP-dependent RNA helicase DDX46 
OS=Mus musculus OX=10090 GN=Ddx46 PE=1 SV=2
Length=1032

 Score = 300 bits (768),  Expect = 2e-87, Method: Composition-based stats.
 Identities = 92/455 (20%), Positives = 178/455 (39%), Gaps = 71/455 (16%)

Query  213  GLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHS  272
            G++ +I   +K         ++   +                 + ++K   G  +     
Sbjct  378  GISMKILNSLKKHGYEKPTPIQTQAIPAIMS--------GRDLIGIAKTGSGKTIAFLLP  429

Query  273  G--NAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
               +    ++      P A+I+ P+RELA Q     K+F K +    LR + + GG    
Sbjct  430  MFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLG---LRVVCVYGGTGIS  486

Query  331  DQLSVLENGVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRM  387
            +Q++ L+ G +I+V TPGR+ D+++       NL +V ++VLDEAD +   G+   + R+
Sbjct  487  EQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRI  546

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
             + +          Q ++ SAT     ++ L+ +I+  P  V + G   V   V   V+ 
Sbjct  547  VDNV------RPDRQTVMFSATFPRA-MEALARRILSKPIEVQVGGRSVVCSDVEQQVIV  599

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
            +  +   L       H +                                       +  
Sbjct  600  IEEEKKFLKLLELLGHYQ---------------------------------------ESG  620

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
              IIF   +   D L +  ++           + C+ LHG    ++R   +  FK G  +
Sbjct  621  SVIIFVDKQEHADGLLKDLMRA---------SYPCMSLHGGIDQYDRDSIINDFKNGTCK  671

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             L+ T VAARG+D+  +  V+N + P+  ++YVHR GR GRA   G A + +  ++ +  
Sbjct  672  LLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYA  731

Query  628  YHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEI  662
              +  +            +   + + ++ +   +I
Sbjct  732  GDIIKALELSGTAVPPDLEKLWSDFKDQQKAEGKI  766


 Score = 114 bits (285),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 15/140 (11%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + ++ + G+  +I  ++++  +  PT IQ ++IP I+ G D++  A+TGSGKT AF +P+
Sbjct  371  IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM  430

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI----------GSDGLC  110
             + +     DQ+  ++G+  I    +   +  +        F+           G  G+ 
Sbjct  431  FRHIM----DQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGIS  486

Query  111  CQSREVKE-WHGCRATKGLM  129
             Q  E+K        T G M
Sbjct  487  EQIAELKRGAEIIVCTPGRM  506


>sp|Q4TVV3|DDX46_DANRE Probable ATP-dependent RNA helicase DDX46 
OS=Danio rerio OX=7955 GN=ddx46 PE=2 SV=1
Length=1018

 Score = 300 bits (767),  Expect = 2e-87, Method: Composition-based stats.
 Identities = 92/455 (20%), Positives = 178/455 (39%), Gaps = 71/455 (16%)

Query  213  GLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHS  272
            G++ ++   +K         ++   +                 + ++K   G  +     
Sbjct  346  GISMKVLNALKKHNYEKPTPIQAQAIPAIMS--------GRDLIGIAKTGSGKTIAFLLP  397

Query  273  GNAQVTQTKFL--PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
                +   + +     P A+I+ P+RELA Q     K+F K +    LR + + GG    
Sbjct  398  MFRHILDQRPVGEAEGPLAVIMTPTRELALQITKECKKFSKSLA---LRVVCVYGGTGIS  454

Query  331  DQLSVLENGVDIVVGTPGRLDDLV---STGKLNLSQVRFLVLDEADGLLSQGYSDFINRM  387
            +Q++ L+ G +I+V TPGR+ D++   +    NL +V ++V+DEAD +   G+   + R+
Sbjct  455  EQIAELKRGAEIIVCTPGRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQVMRI  514

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
             + +          Q ++ SAT     ++ L+ +I+  P  V + G   V   V   V+ 
Sbjct  515  VDNV------RPDRQTVMFSATFPRT-MEALARRILSKPVEVQVGGRSVVCSDVEQHVIV  567

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
            +  +   L       H +                                       +  
Sbjct  568  IEEEKKFLKLLEILGHYQ---------------------------------------EKG  588

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
              IIF   +   D L +  ++           + C+ LHG    ++R   +  FK G  R
Sbjct  589  SVIIFVDKQEHADGLLKDLMKA---------SYPCMSLHGGIDQYDRDSIINDFKNGACR  639

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             L+ T VAARG+D+  +  V+N + P+  ++YVHR GR GRA   G A + +   + +  
Sbjct  640  LLVATSVAARGLDVKQLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEGQARYS  699

Query  628  YHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEI  662
              +  +      +   + +   T +  + +   +I
Sbjct  700  GDILKALELSGSSVPAELEQLWTNFKEQQKAEGKI  734


 Score = 110 bits (275),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 33/140 (24%), Positives = 64/140 (46%), Gaps = 15/140 (11%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  + + G+  ++  A+++ ++  PT IQA++IP I+ G D++  A+TGSGKT AF +P+
Sbjct  339  IKTWVQCGISMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM  398

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI----------GSDGLC  110
             + +     DQ+   + +  +    +   +  +        F+           G  G+ 
Sbjct  399  FRHIL----DQRPVGEAEGPLAVIMTPTRELALQITKECKKFSKSLALRVVCVYGGTGIS  454

Query  111  CQSREVKE-WHGCRATKGLM  129
             Q  E+K        T G M
Sbjct  455  EQIAELKRGAEIIVCTPGRM  474


>sp|Q9CJS1|RHLB_PASMU ATP-dependent RNA helicase RhlB OS=Pasteurella 
multocida (strain Pm70) OX=272843 GN=rhlB PE=3 SV=1
Length=423

 Score = 285 bits (728),  Expect = 2e-87, Method: Composition-based stats.
 Identities = 100/397 (25%), Positives = 163/397 (41%), Gaps = 59/397 (15%)

Query  257  ALSKAPDGYIVKSQHSGNAQV--TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYID  314
              ++   G  +    +    +   Q       P+ALI+ P+RELA Q  N+     K   
Sbjct  51   GQAQTGTGKTMAFLTATFHHLLTQQGDKGGRQPRALILAPTRELAVQINNDAALLTK---  107

Query  315  NPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADG  374
               L+  L  GG     QL  +E GVDI++GT GR+ D V  G + L +++ +VLDEAD 
Sbjct  108  ATGLKTGLAYGGDGYEKQLKAIEQGVDILIGTTGRVIDYVKQGIVRLDKIQVVVLDEADR  167

Query  375  LLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE  434
            +   G+   I  +  + P      +    ++ SATL S+ V++L+ + M+ P +V+++  
Sbjct  168  MFDLGFIKDIRYLLRKCPA----PQHRLTMLFSATL-SYKVRELAFEDMNDPEYVEIEPL  222

Query  435  DSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG  494
                  +                                         E         K 
Sbjct  223  QKTGHRIK----------------------------------------EELFYPSNQDKM  242

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
               +  ++E   ++ IIF  TK  C+++  Y    G              L GD    +R
Sbjct  243  ALLLTLLEEEWPERCIIFANTKHRCEDIWGYLAADG---------HRVGLLTGDVAQKKR  293

Query  555  KQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGL  614
               L++F +G +  L+ TDVAARG+ I  V +V N  LPD++++YVHRIGR GRA   G+
Sbjct  294  LSLLKQFTEGHLDILVATDVAARGLHISDVSHVFNYDLPDDREDYVHRIGRTGRAGESGV  353

Query  615  AISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTI  651
            +IS    E       +          ++       T+
Sbjct  354  SISFACEEYAMNLPAIEEYISHSIPVSQYDVAALLTL  390


 Score = 100 bits (250),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 61/347 (18%), Positives = 117/347 (34%), Gaps = 50/347 (14%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS++ +  ++  A++E  +   T IQA S+P+ L G DV   A+TG+GKT AF    +  
Sbjct  11   FSDLPLHHQVLAALQEKGFDYCTPIQALSLPMSLAGKDVAGQAQTGTGKTMAF----LTA  66

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
             +  L  QQ  K G+       +   +  +   +               +  + +  G +
Sbjct  67   TFHHLLTQQGDKGGRQPRALILAPTRELAVQINN--------------DAALLTKATGLK  112

Query  124  ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG  183
                     +  ++   +QG+           + +GT      +   G    +K      
Sbjct  113  TGLAYGGDGYEKQLKAIEQGV----------DILIGTTGRVIDYVKQGIVRLDK------  156

Query  184  EEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFG  243
             +  + D      D+      F K+ + L      P H            K  EL F   
Sbjct  157  IQVVVLDEADRMFDL-----GFIKDIRYLLRKCPAPQHRLTMLFSATLSYKVRELAFEDM  211

Query  244  EEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTL  303
             +      +       +  +     S     A +          + +I   ++       
Sbjct  212  NDPEYVEIEPLQKTGHRIKEELFYPSNQDKMALLLTLLEEEWPERCIIFANTK-------  264

Query  304  NNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
            +  +    Y+     R  L+ G VA + +LS+L+      +DI+V T
Sbjct  265  HRCEDIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTEGHLDILVAT  311


>sp|A7TGW7|DBP10_VANPO ATP-dependent RNA helicase DBP10 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 
21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=DBP10 PE=3 SV=1
Length=977

 Score = 299 bits (765),  Expect = 2e-87, Method: Composition-based stats.
 Identities = 107/472 (23%), Positives = 184/472 (39%), Gaps = 47/472 (10%)

Query  195  YLDIDKGHVKFSKNGK--DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPK  252
            Y  I+       K G     G +  I  ++  +       ++   +             K
Sbjct  107  YFSINNSEKSKHKKGSFPSFGFSKLILSNVHKKGFRQPTPIQRKTIPLIL--------QK  158

Query  253  DGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKY  312
               V +++   G           ++        A +A+I+ PSRELA QT    K+F K 
Sbjct  159  RDIVGMARTGSGKTAAFVLPMIEKLKSHSSKIGA-RAVILSPSRELALQTHRVFKEFSK-  216

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
                 LR +L+ GG +  DQ S++ +  D++V TPGR   L     L+L  V ++V DEA
Sbjct  217  --GTHLRSVLLTGGDSLEDQFSMMMSNPDVIVATPGRFLHLKVEMSLDLKTVEYVVFDEA  274

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D L   G+ + +N +   +P         Q ++ SATL S  V   ++  +  P  V L 
Sbjct  275  DRLFEMGFQEQLNELLAALP------MNRQTLLFSATLPSSLV-DFAKAGLTNPVLVRLD  327

Query  433  GEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKIL  492
             E  + + +  + +    +            +    +   D  +  ++  +  S++    
Sbjct  328  AETKISENLEILFLSTKNEERENNLLYLLQDVIKIPLGTDDQIKKLSDFNKSLSDSDSED  387

Query  493  KGEYAVRAIKEHKMDQ-----------------AIIFCRTKIDCDNLEQYFIQQGGGPDK  535
            +     +  ++ K  +                  I+F  T+   + + Q     G     
Sbjct  388  EDNKGKQNSRKSKKGKFQKLKVSASNELPTEKSTIVFAPTRHHVEYITQLLKDSG-----  442

Query  536  KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDE  595
                F    L+G    H RK+ L  F+ G    L+ TDVAARG+DI  +  VIN +LP  
Sbjct  443  ----FLVSYLYGTLDQHARKRQLLNFRAGLTSILVVTDVAARGVDIPMLANVINYSLPAS  498

Query  596  KQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDG  647
             + ++HR+GR  RA   G A S+V+  +      +    GK    T + E  
Sbjct  499  SKIFIHRVGRTARAGNRGWAYSIVSETELPYMLDLELFLGKKILLTSMYEAS  550


 Score = 100 bits (249),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 30/105 (29%), Positives = 47/105 (45%), Gaps = 7/105 (7%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F   G    I   V +  +  PT IQ ++IPLIL   D++  A TGSGKT AF +P+I+
Sbjct  122  SFPSFGFSKLILSNVHKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE  181

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
             +          K G   +    S   +  +  +     F+ G+ 
Sbjct  182  KLKSHS-----SKIGARAV--ILSPSRELALQTHRVFKEFSKGTH  219


>sp|Q75F95|DRS1_EREGS ATP-dependent RNA helicase DRS1 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DRS1 PE=3 SV=1
Length=734

 Score = 294 bits (752),  Expect = 2e-87, Method: Composition-based stats.
 Identities = 99/479 (21%), Positives = 180/479 (38%), Gaps = 64/479 (13%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
                 L L+  +   +          ++ A +                 +A +    G  
Sbjct  219  STFNSLSLSRPVLKGLAALGYTKPSPIQGATIPIAL--------LGKDVIAGAVTGSGKT  270

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
                     ++        + + L++ P+RELA Q  +  K+  K++    L   L +GG
Sbjct  271  AAFMIPIIERLLYKPAKIASTRVLVLTPTRELAIQVADVGKKLGKFVSG--LTFGLAVGG  328

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            +  R Q   L+   DIV+ TPGR+ D + ++   ++  V  LV+DEAD +L  G+ D +N
Sbjct  329  LNLRQQEQALKLRPDIVIATPGRIIDHIRNSASFSVDSVEVLVIDEADRMLEDGFQDELN  388

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
             + + IP       + Q ++ SAT++S  +K+L    +  P  + +       + +    
Sbjct  389  EIMSLIP------SKRQTLLFSATMNSR-IKQLISLSLKKPVRIMIDPPKQAANKLTQEF  441

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
            V +  +       L                                    + +R +    
Sbjct  442  VRLRKREHLKPALL-----------------------------------YHLLRKLDSTG  466

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
              + ++F   K     L       G              LHG     +R Q++  FK  D
Sbjct  467  QKRIVVFVARKEVAHRLRVILGLLG---------MKAGELHGSLTQEQRLQSVNNFKSLD  517

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV--ATEK  623
            V  L+CTD+A+RG+DI  +  VIN  +P   + Y+HR+GR  RA R G +++LV  +T++
Sbjct  518  VPVLVCTDLASRGLDIPKIEVVINYDMPKTYEIYLHRVGRTARAGREGKSVTLVGESTQE  577

Query  624  EKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVD  682
              +      S      + R            E+  L + +E +   I + E   K  + 
Sbjct  578  RSIVKDAIKSVDGSKGSGRACGRVVDWKQVEEIHKLVQAKEDVIGEILEEEKQEKEILR  636


 Score = 105 bits (263),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 28/108 (26%), Positives = 48/108 (44%), Gaps = 6/108 (6%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F+ + +   + + +  + +  P+ IQ  +IP+ L G DV+  A TGSGKT AF IP+I
Sbjct  219  STFNSLSLSRPVLKGLAALGYTKPSPIQGATIPIALLGKDVIAGAVTGSGKTAAFMIPII  278

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGL  109
            + +           K  +T     +   +  +   D G        GL
Sbjct  279  ERLLYKP------AKIASTRVLVLTPTRELAIQVADVGKKLGKFVSGL  320


>sp|Q3T147|DX39B_BOVIN Spliceosome RNA helicase DDX39B OS=Bos 
taurus OX=9913 GN=DDX39B PE=2 SV=1
Length=428

 Score = 285 bits (728),  Expect = 2e-87, Method: Composition-based stats.
 Identities = 109/509 (21%), Positives = 193/509 (38%), Gaps = 106/509 (21%)

Query  187  TMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACV-----LKNAELKFN  241
              +D     LD +   V+ +  G D G        +K   +          L   EL   
Sbjct  2    AENDVDNELLDYEDDEVE-TAAGGD-GAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRA  59

Query  242  FGEEEFKFPPKD----------GFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALI  291
              +  F+ P +           G   L +A  G   K+     A + Q + +      L+
Sbjct  60   IVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGM-GKTAVFVLATLQQLEPVTGQVSVLV  118

Query  292  VEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG-VDIVVGTPGRL  350
            +  +RELA Q     ++F KY+  P ++  +  GG++ +    VL+     IVVGTPGR+
Sbjct  119  MCHTRELAFQISKEYERFSKYM--PSVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI  176

Query  351  DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATL  410
              L     LNL  ++  +LDE D +L       + R   +I ++T   K  QV++ SATL
Sbjct  177  LALARNKSLNLKHIKHFILDECDKMLE---QLDMRRDVQEIFRMTPHEK--QVMMFSATL  231

Query  411  HSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVH  470
             S +++ +  K M  P  + +  E  +                     L + +++  D  
Sbjct  232  -SKEIRPVCRKFMQDPMEIFVDDETKL-----------------TLHGLQQYYVKLKDNE  273

Query  471  AKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQG  530
                                  K       +   + +Q +IF ++   C  L Q  ++Q 
Sbjct  274  ----------------------KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ-  310

Query  531  GGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINV  590
                     F  + +H      ER    ++FK    R L+ T++  RG+DI  V    N 
Sbjct  311  --------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNY  362

Query  591  TLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCT  650
             +P++   Y+HR+ R GR    GLAI+ V+ E                            
Sbjct  363  DMPEDSDTYLHRVARAGRFGTKGLAITFVSDE----------------------------  394

Query  651  IWYNEMQLLSEIEEHLNCTISQVEPDIKV  679
               N+ ++L+++++     IS++  +I +
Sbjct  395  ---NDAKILNDVQDRFEVNISELPDEIDI  420


 Score = 77.9 bits (190),  Expect = 8e-14, Method: Composition-based stats.
 Identities = 20/63 (32%), Positives = 37/63 (59%), Gaps = 0/63 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F +  + PE+ +A+ +  +  P+++Q E IP  + G DVL  A++G GKT  F +  +
Sbjct  45   SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL  104

Query  62   QIV  64
            Q +
Sbjct  105  QQL  107


>sp|Q86XP3|DDX42_HUMAN ATP-dependent RNA helicase DDX42 OS=Homo 
sapiens OX=9606 GN=DDX42 PE=1 SV=1
Length=938

 Score = 298 bits (763),  Expect = 2e-87, Method: Composition-based stats.
 Identities = 96/390 (25%), Positives = 156/390 (40%), Gaps = 59/390 (15%)

Query  247  FKFPPKDGFVALSKAPDGYIVKS-QHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLN  304
                     + ++K   G             + Q +  P + P A+IV P+REL +Q   
Sbjct  285  PVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHA  344

Query  305  NIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQV  364
              K+F K  +   LR + + GG +  +Q   L+ G +IVV TPGRL D V     NL +V
Sbjct  345  ECKRFGKAYN---LRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRV  401

Query  365  RFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH  424
             +LV DEAD +   G+   +  + + +          Q ++ SAT     ++KL+  I+ 
Sbjct  402  SYLVFDEADRMFDMGFEYQVRSIASHV------RPDRQTLLFSATF-RKKIEKLARDILI  454

Query  425  FPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEM  484
             P  V         + V  +V  ++    + W  L +                       
Sbjct  455  DPIRVVQGDIGEANEDVTQIVEILHSGPSK-WNWLTR-----------------------  490

Query  485  WSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC  544
                          R ++       ++F   K + + L     Q+G          +   
Sbjct  491  --------------RLVEFTSSGSVLLFVTKKANAEELANNLKQEG---------HNLGL  527

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            LHGD    ER + +  FKK D+  L+ TDVAARG+DI  +  VIN  +  +   + HRIG
Sbjct  528  LHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIG  587

Query  605  RVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            R GRA   G+A +L+  +       +  + 
Sbjct  588  RTGRAGEKGVAYTLLTPKDSNFAGDLVRNL  617


 Score = 107 bits (267),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 4/104 (4%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            ++F+  G   ++   + + ++  PT IQ + +P+ L G D++  A+TGSGKT AF  P++
Sbjct  253  SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML  312

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG  105
              +     DQ+E + G   I        +     +     F   
Sbjct  313  IHIM----DQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKA  352


>sp|D0PV95|DDX3_CAEEL ATP-dependent RNA helicase laf-1 OS=Caenorhabditis 
elegans OX=6239 GN=laf-1 PE=1 SV=1
Length=708

 Score = 293 bits (749),  Expect = 2e-87, Method: Composition-based stats.
 Identities = 94/387 (24%), Positives = 152/387 (39%), Gaps = 65/387 (17%)

Query  258  LSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPK  317
            L   PD        SG  +          P AL++ P+REL+ Q  N  ++F        
Sbjct  294  LQDGPDAVHRSVTSSGGRKKQ-------YPSALVLSPTRELSLQIFNESRKFA---YRTP  343

Query  318  LRELLIIGG-VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL  376
            +   L+ GG    +DQ+  L  G  I++ TPGRL D++  G + +   R+LVLDEAD +L
Sbjct  344  ITSALLYGGRENYKDQIHKLRLGCHILIATPGRLIDVMDQGLIGMEGCRYLVLDEADRML  403

Query  377  SQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH-FPTWVDLKGED  435
              G+   I ++           +     + SAT    +++ L++  +     ++ +    
Sbjct  404  DMGFEPQIRQIVEC--NRMPSKEERITAMFSATFPK-EIQLLAQDFLKENYVFLAVGRVG  460

Query  436  SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGE  495
            S  + +   +V V     R                                         
Sbjct  461  STSENIMQKIVWVEEDEKR----------------------------------------S  480

Query  496  YAVRAIKEHKMDQ-AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
            Y +  +         ++F  TK    +L  Y  +Q          +  V +HGD K  ER
Sbjct  481  YLMDLLDATGDSSLTLVFVETKRGASDLAYYLNRQ---------NYEVVTIHGDLKQFER  531

Query  555  KQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGL  614
            +++L+ F+ G    L+ T VAARG+DI  V +VIN  LP +   YVHRIGR GR   +GL
Sbjct  532  EKHLDLFRTGTAPILVATAVAARGLDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGL  591

Query  615  AISLVATEKEKVWYHVCSSRGKGCYNT  641
            A S    +   +   +     +     
Sbjct  592  ATSFFNDKNRNIARELMDLIVEANQEL  618


 Score = 109 bits (271),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 69/166 (42%), Gaps = 26/166 (16%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++ FS++ +   I + ++   +  PT +Q  SIP + GG D++  A+TGSGKT AF +P+
Sbjct  230  ISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTGSGKTAAFLVPL  289

Query  61   IQIVYETLKD-------QQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA---IGSDGLC  110
            +  + +   D          G+K +       S   +  +  ++    FA     +  L 
Sbjct  290  VNAILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTRELSLQIFNESRKFAYRTPITSALL  349

Query  111  CQSREVKEW---------HGCRATKGLMKGKHYYEVSCHDQGLCRV  147
               RE  +          H   AT G +       +   DQGL  +
Sbjct  350  YGGRENYKDQIHKLRLGCHILIATPGRL-------IDVMDQGLIGM  388


>sp|Q6CXT4|IF4A_KLULA ATP-dependent RNA helicase eIF4A OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / 
NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=TIF1 PE=3 SV=1
Length=396

 Score = 283 bits (724),  Expect = 3e-87, Method: Composition-based stats.
 Identities = 105/426 (25%), Positives = 178/426 (42%), Gaps = 71/426 (17%)

Query  228  FPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN------AQVTQ  279
            F    LK   L+  F +G  E     +   + + +  D        +G       A +  
Sbjct  24   FDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQN  83

Query  280  TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
                  AP+ LI+ P+RELA Q    +     ++D   ++    IGG + ++    L  G
Sbjct  84   IDEKIKAPQGLILAPTRELALQIQKVVMALAIHMD---VKVHACIGGTSLQEDSEALRGG  140

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
              I+VGTPGR+ D++         ++  +LDEAD +LS G+ + I  +   +P  +    
Sbjct  141  AQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTS----  196

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              QV++ SAT+   DV +++ K M  P  + +K ++   + +    V V  +        
Sbjct  197  --QVVLLSATMP-GDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQ-------  246

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
                                             K +          + QA+IFC T+   
Sbjct  247  --------------------------------YKYDCLTDLYDSISVTQAVIFCNTRRKV  274

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            + L +   +         + F+   ++ D +  ER   ++ F+ G  R LI TD+ ARGI
Sbjct  275  EELTERLRE---------NNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGI  325

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCY  639
            D+  V  VIN  LP  K+NY+HRIGR GR  R G+AI+ V  +       +     +  Y
Sbjct  326  DVQQVSLVINYDLPSNKENYIHRIGRGGRFGRKGIAINFVTNKDIGAMREL-----ERFY  380

Query  640  NTRLKE  645
            +T+++E
Sbjct  381  STQIEE  386


 Score = 95.6 bits (236),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 28/105 (27%), Positives = 49/105 (47%), Gaps = 9/105 (9%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F ++ +  E+ + +    ++ P+ IQ  +I  I+ G DVL  A++G+GKTG FSI  +Q
Sbjct  23   SFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQ  82

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
             + E +K  Q             +   +  +       A AI  D
Sbjct  83   NIDEKIKAPQ---------GLILAPTRELALQIQKVVMALAIHMD  118


>sp|A7ESL7|DBP10_SCLS1 ATP-dependent RNA helicase dbp10 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=dbp10 PE=3 SV=2
Length=920

 Score = 297 bits (761),  Expect = 3e-87, Method: Composition-based stats.
 Identities = 108/420 (26%), Positives = 163/420 (39%), Gaps = 36/420 (9%)

Query  221  HMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQT  280
             +K    F A  L +  LK     + F  P       +    D   V       +  T  
Sbjct  83   SVKKGGGFQAMGLNSHLLK-AISRKGFNVPTPIQRKTIPLVLDNQDVVGMARTGSGKTAA  141

Query  281  KFLPN-----------APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAA  329
              +P              +ALI+ PSRELA QTL  +K+F +      L+ +L++GG + 
Sbjct  142  FVIPMIEKLRAHSVRVGARALIMSPSRELALQTLKVVKEFGR---GTDLKCVLLVGGDSL  198

Query  330  RDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHN  389
             +Q   +    DIV+ TPGR   L     L+LS ++++V DEAD L   G++  +  + +
Sbjct  199  EEQFGFMAANPDIVIATPGRFLHLKVEMSLDLSSMKYVVFDEADRLFEMGFAAQLGEILH  258

Query  390  QIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN  449
             +P         Q ++ SATL    V+  +   +  P+ V L  E  V   +      V 
Sbjct  259  ALPIS------RQTLLFSATLPKSLVE-FARAGLQEPSLVRLDAESKVSPDLQSAFFSVK  311

Query  450  PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA  509
                         HI  D V         A +        +    +   + +K  +    
Sbjct  312  GAEKEG----ALLHILQDLVKMPTGLPENALNATDNFSKKRKRGPDGPTKKLKPTE-HST  366

Query  510  IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL  569
            IIF  TK   D L       G         F+    +G      R   +E F+ G    L
Sbjct  367  IIFAATKHHVDYLASLLRMSG---------FAVSHAYGSLDQTARNIQVEDFRTGKSNIL  417

Query  570  ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            + TDVAARGIDI  +  VIN   P + + +VHR+GR  RA + G + SLV          
Sbjct  418  VVTDVAARGIDIPVLANVINYDFPPQPKVFVHRVGRTARAGQRGWSYSLVRDTDAPYLLD  477


 Score = 101 bits (251),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 32/108 (30%), Positives = 50/108 (46%), Gaps = 7/108 (6%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F  MG+   + +A+    + +PT IQ ++IPL+L   DV+  A TGSGKT AF IP+I+ 
Sbjct  90   FQAMGLNSHLLKAISRKGFNVPTPIQRKTIPLVLDNQDVVGMARTGSGKTAAFVIPMIEK  149

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
            +       + G +         S   +  +        F  G+D  C 
Sbjct  150  LRAH--SVRVGAR-----ALIMSPSRELALQTLKVVKEFGRGTDLKCV  190


>sp|Q6GWX0|DDX4_PIG Probable ATP-dependent RNA helicase DDX4 OS=Sus 
scrofa OX=9823 GN=DDX4 PE=2 SV=1
Length=722

 Score = 293 bits (749),  Expect = 4e-87, Method: Composition-based stats.
 Identities = 95/412 (23%), Positives = 162/412 (39%), Gaps = 69/412 (17%)

Query  252  KDGFVALSKAPDGYIVKSQHSGNA-----QVTQTKFLP-NAPKALIVEPSRELAEQTLNN  305
                +A ++   G          A      +T ++F     P+ +IV P+REL  Q    
Sbjct  323  GRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLE  382

Query  306  IKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVR  365
             ++F        +R ++I GG      +  +  G +I+  TPGRL D++   K+ L Q++
Sbjct  383  ARKFS---FGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIK  439

Query  366  FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH-  424
            +LVLDEAD +L  G+   + ++ +         ++ Q ++ SAT    ++++L+ + +  
Sbjct  440  YLVLDEADRMLDMGFGPEMKKLISC--PGMPSKEQRQTLMFSATFP-EEIQRLAAEFLKS  496

Query  425  FPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEM  484
               +V +         V    + V   + R                              
Sbjct  497  NYLFVAVGQVGGACRDVQQADLQVGQYSKR------------------------------  526

Query  485  WSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC  544
                      E  +  ++    ++ ++F  TK   D +  +  Q+         + S   
Sbjct  527  ----------EKLLEILRNIGDERTMVFVETKKKADFIATFLCQE---------KISTTS  567

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            +HGDR+  ER+Q L  F+ G    L+ T VAARG+DI  V +VIN  LP     YVHRIG
Sbjct  568  IHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIG  627

Query  605  RVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEM  656
            R GR    G AIS    E +       +   +               W  E+
Sbjct  628  RTGRCGNTGRAISFFDLESD-------NHLAQPLVKVLTDAQQDVPAWLEEI  672


 Score = 105 bits (262),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 25/106 (24%), Positives = 46/106 (43%), Gaps = 0/106 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E  +   +   + +  +   T +Q  SIP+IL G D++  A+TGSGKT AF +P+
Sbjct  285  ILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPI  344

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            +  +          K+ +       +   +     Y     F+ G+
Sbjct  345  LAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGT  390


>sp|Q879Y6|RHLB_XYLFT ATP-dependent RNA helicase RhlB OS=Xylella 
fastidiosa (strain Temecula1 / ATCC 700964) OX=183190 GN=rhlB 
PE=3 SV=1
Length=543

 Score = 288 bits (736),  Expect = 4e-87, Method: Composition-based stats.
 Identities = 102/431 (24%), Positives = 164/431 (38%), Gaps = 70/431 (16%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
             N     L   +   +          ++   L                    ++   G  
Sbjct  9    LNFSSFDLHPALLTGLTRAGFTLCTPIQALTLPVALA--------GRDIAGQAQTGTGKT  60

Query  267  VKSQHSGNAQVTQTKFL----PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
            +        ++  +  L    P  P+ALI+ P+RELA Q  N+  +F     N  LR  L
Sbjct  61   LAFLVVVVNRLLSSPGLVNRNPEDPRALILAPTRELAIQIYNDAVKFG---GNLGLRFAL  117

Query  323  IIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGK-LNLSQVRFLVLDEADGLLSQGYS  381
            I GGV    Q  +L  G D+V+ TPGRL D +   + ++L      VLDEAD +   G+ 
Sbjct  118  IYGGVDYDRQREMLRKGADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFI  177

Query  382  DFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV  441
              I  +  ++P+  S     Q ++ SATL S  V +L+ + M+ P  +  + E      V
Sbjct  178  KDIRFILRRLPERCS----RQTLLFSATL-SHRVLELAYEYMNEPEKLVAETESVTTTRV  232

Query  442  HHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI  501
               +     +                                         K    +  +
Sbjct  233  RQRIYFPAEEE----------------------------------------KIPLLLGLL  252

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
              ++  + ++F  TK+  + + +   + G         +    L GD    +R+  L RF
Sbjct  253  SRNEGMRTMVFVNTKVFVEGVARALDEAG---------YRVGVLSGDVPQRKRETLLNRF  303

Query  562  KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT  621
            +KG +  L+ TDVAARG+ I GV YV N  LP + ++YVHRIGR  R    G AIS    
Sbjct  304  QKGQLEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISFACE  363

Query  622  EKEKVWYHVCS  632
                    + +
Sbjct  364  RYAMSLPDIEA  374


 Score = 101 bits (251),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 55/360 (15%), Positives = 113/360 (31%), Gaps = 73/360 (20%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS   + P +   +    + L T IQA ++P+ L G D+   A+TG+GKT AF + V+  
Sbjct  11   FSSFDLHPALLTGLTRAGFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVVNR  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDR--------GSAFAIGSDGLCCQSRE  115
            +  +        +    +    +   +  +  Y+         G  FA+   G+    + 
Sbjct  71   LLSSPGLVNRNPEDPRAL--ILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDRQR  128

Query  116  ---VKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGK  172
                K      AT G +   +  +       +C +        LD     F  GF     
Sbjct  129  EMLRKGADVVIATPGRLID-YLKQHEVVSLRVCEI------CVLDEADRMFDLGFI----  177

Query  173  KSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACV  232
                                          ++F            +P     Q L  +  
Sbjct  178  ----------------------------KDIRFILR--------RLPERCSRQTLLFSAT  201

Query  233  LKNA--ELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKAL  290
            L +   EL + +  E  K   +   V  ++        ++      +          + +
Sbjct  202  LSHRVLELAYEYMNEPEKLVAETESVTTTRVRQRIYFPAEEEKIPLLLGLLSRNEGMRTM  261

Query  291  IVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
            +   ++         ++   + +D    R  ++ G V  R + ++L       ++I+V T
Sbjct  262  VFVNTK-------VFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQKGQLEILVAT  314


>sp|Q6C0X2|DHH1_YARLI ATP-dependent RNA helicase DHH1 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DHH1 PE=3 
SV=1
Length=522

 Score = 287 bits (734),  Expect = 4e-87, Method: Composition-based stats.
 Identities = 106/484 (22%), Positives = 184/484 (38%), Gaps = 88/484 (18%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             +D  L  E+   +          ++   +               G   L++A +G   K
Sbjct  30   FEDFFLKRELLMGIFEAGFENPSPIQEEAIPIAL----------AGRDILARAKNG-TGK  78

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
            +       + Q     N  +ALI+ P+RELA QT    K   K++    ++ ++  GG  
Sbjct  79   TAAFVIPALQQVNPKVNKIQALIMVPTRELALQTSQVCKTLGKHLG---IKVMVTTGGTN  135

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
             RD +  LE+ V ++VGTPGR+ DL   G  +LS+    ++DEAD LLS  ++  I ++ 
Sbjct  136  LRDDIMRLEDTVHVLVGTPGRVLDLAGKGVADLSESPMFIMDEADKLLSPDFTPIIEQVL  195

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
            +  P      +  Q+++ SAT     VK   ++ +H P  ++L  ++     +      V
Sbjct  196  HFFP------EDRQILLFSATFP-LTVKAFMDRNLHKPYEINLM-DELTLRGITQYYAFV  247

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
            + K                                         K         +  ++Q
Sbjct  248  DEKQ----------------------------------------KLHCLNTLFSKLDINQ  267

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
            +IIFC + +  + L +   + G         +SC   H       R +    F+ G  R 
Sbjct  268  SIIFCNSTVRVELLARKITELG---------YSCYYSHAKMIQSHRNRVFHEFRNGTCRN  318

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            L+C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR   +G+AI+L+        Y
Sbjct  319  LVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGIAINLINWNDRYNLY  378

Query  629  HVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKV  688
             +    G                      + ++I+++L    S        P+ +     
Sbjct  379  KIEQELGT-----------------EIKPIPAQIDKNLYVAESSENIPRPFPIADMPRGK  421

Query  689  TYGQ  692
               +
Sbjct  422  ESKR  425


 Score = 100 bits (248),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 25/93 (27%), Positives = 40/93 (43%), Gaps = 9/93 (10%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F +  +  E+   + E  +  P+ IQ E+IP+ L G D+L  A+ G+GKT AF IP +
Sbjct  28   TGFEDFFLKRELLMGIFEAGFENPSPIQEEAIPIALAGRDILARAKNGTGKTAAFVIPAL  87

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
            Q V   +   Q                 +  + 
Sbjct  88   QQVNPKVNKIQ---------ALIMVPTRELALQ  111


>sp|Q0TXZ2|SUB2_PHANO ATP-dependent RNA helicase SUB2 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=SUB2 PE=3 SV=1
Length=438

 Score = 284 bits (726),  Expect = 5e-87, Method: Composition-based stats.
 Identities = 97/418 (23%), Positives = 164/418 (39%), Gaps = 72/418 (17%)

Query  232  VLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY---------IVKSQHSGNAQVTQT--  280
             L   EL     +  F+ P +   V + +A  G          + K+     A + Q   
Sbjct  57   FLLKDELVRAITDCGFEHPSEVQQVTIPQAILGNDVLCQAKSGLGKTAVFVLATLQQMDE  116

Query  281  KFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG-  339
            K  P     L++  +RELA Q  N   +F K++  P ++  +  GG      + +L N  
Sbjct  117  KPEPGVASILVMCHTRELAYQIRNEYNRFAKFL--PDVKVGVFYGGTPVAKDIELLSNKD  174

Query  340  --VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD  397
                I+VGTPGR++ LV    L L+ ++  VLDE D +L       +      I + T  
Sbjct  175  THPHIIVGTPGRINALVRDRHLRLANLKHFVLDECDKMLD---QPDMRNDVQAIFRATPA  231

Query  398  GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDS-VPDTVHHVVVPVNPKTDRLW  456
             K  QV++ SATL S +++ + +K M  P  + +  E       +    V ++ +     
Sbjct  232  HK--QVMMFSATL-SKEIRAVCKKFMQNPLEIYVDDEKKLTLHGLQQFYVKLDERE----  284

Query  457  ERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTK  516
                                                K       +   + +Q IIF R+ 
Sbjct  285  ------------------------------------KNRKLNDLLDNLEFNQVIIFVRST  308

Query  517  IDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAA  576
            + C  L++   +           F    +H      ER +  + FK+   R  + TD+  
Sbjct  309  LRCTELDKLLRE---------CNFPSTAVHSGIGQEERIKRYKEFKEFQTRICVSTDIFG  359

Query  577  RGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            RGID+  +   IN  +PD+   Y+HR+GR GR    GL+IS V+++ ++        R
Sbjct  360  RGIDVERINVAINYDMPDKADAYLHRVGRAGRFGTKGLSISFVSSQDDEAVLKAIEER  417


 Score = 79.0 bits (193),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 42/103 (41%), Gaps = 7/103 (7%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F +  +  E+ +A+ +  +  P+++Q  +IP  + G DVL  A++G GKT  F +  +
Sbjct  52   TGFRDFLLKDELVRAITDCGFEHPSEVQQVTIPQAILGNDVLCQAKSGLGKTAVFVLATL  111

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            Q + E         +             +      +  + FA 
Sbjct  112  QQMDEK-------PEPGVASILVMCHTRELAYQIRNEYNRFAK  147


>sp|Q6C7X8|DBP10_YARLI ATP-dependent RNA helicase DBP10 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP10 
PE=3 SV=1
Length=926

 Score = 297 bits (760),  Expect = 5e-87, Method: Composition-based stats.
 Identities = 108/444 (24%), Positives = 172/444 (39%), Gaps = 41/444 (9%)

Query  221  HMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQT  280
              K+   F    L    LK N   + FK P       +    +G  V       +  T  
Sbjct  97   GKKSSGSFAGLGLSQLVLK-NIARKGFKQPTPIQRKTIPLVLEGKDVVGMARTGSGKTAA  155

Query  281  KFLPN-----------APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAA  329
              LP              +A+I+ PSRELA QTL  +K F        LR  +++GG + 
Sbjct  156  FVLPMLEKLKVHSAKVGARAVILSPSRELALQTLKVVKDFSA---GTDLRLAMLVGGDSL  212

Query  330  RDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHN  389
             +Q  ++ +  DI++ TPGR   L    +L+L+ V ++  DEAD L   G+ + +N +  
Sbjct  213  EEQFKMMMSNPDIIIATPGRFLHLKVEMELSLASVEYICFDEADRLFELGFGEQMNELLA  272

Query  390  QIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN  449
             +P         Q ++ SATL    V+  ++  +H P  V L  E  +P+ +      V 
Sbjct  273  SLP------SNRQTLLFSATLPKTLVE-FAKAGLHDPILVRLDAETKLPEHLEMTFFAVK  325

Query  450  PK----------TDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVR  499
                         + +           +     +         E   +     K E    
Sbjct  326  ENQRDACLAFILKEVIQMPFATPEQLKELERLDERAIDDGERDEDRKQKRPKFKKERLPP  385

Query  500  AIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLE  559
            A +       I+FC TK   + +       G         ++   ++G    H RK  L 
Sbjct  386  AHQLPSEKSTIVFCPTKHHVEYVIVLLQTLG---------YAVSYIYGTLDQHARKNQLY  436

Query  560  RFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            RF+ G    L+ TDVAARGID+  +  VIN +LP   + ++HR+GR  RA   G A S++
Sbjct  437  RFRTGKTSILVVTDVAARGIDVPVLANVINYSLPPSPKVFIHRVGRTARAGNRGWAYSII  496

Query  620  ATEKEKVWYHVCSSRGKGCYNTRL  643
                      +    G+     RL
Sbjct  497  KDNDIPYLLDLEVFLGRKLLTPRL  520


 Score = 106 bits (264),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 29/105 (28%), Positives = 51/105 (49%), Gaps = 7/105 (7%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F+ +G+   + + +    +  PT IQ ++IPL+L G DV+  A TGSGKT AF +P+++
Sbjct  103  SFAGLGLSQLVLKNIARKGFKQPTPIQRKTIPLVLEGKDVVGMARTGSGKTAAFVLPMLE  162

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
             +          K G   +    S   +  +        F+ G+D
Sbjct  163  KL-----KVHSAKVGARAV--ILSPSRELALQTLKVVKDFSAGTD  200


>sp|Q757U8|DBP10_EREGS ATP-dependent RNA helicase DBP10 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DBP10 PE=3 SV=1
Length=960

 Score = 297 bits (761),  Expect = 5e-87, Method: Composition-based stats.
 Identities = 99/447 (22%), Positives = 175/447 (39%), Gaps = 38/447 (9%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
                GL+  I  ++  +       ++   +             +   V +++   G    
Sbjct  122  FASFGLSKFILGNISRKGFRQPTPIQRKTIPLIL--------QQRDIVGMARTGSGKTAA  173

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
                   ++        A +A+I+ PSRELA QT    K+F K      LR +L+ GG  
Sbjct  174  FVLPLIEKLKMHSAKIGA-RAMILSPSRELAMQTHKVFKEFAK---GSNLRSVLLTGGDG  229

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
              DQ S++ +  D+++ TPGR   L     L+L  + ++V DEAD L   G+ + +N + 
Sbjct  230  LEDQFSMMMSNPDVIIATPGRFLHLKVEMNLDLHSIEYVVFDEADRLFEMGFQEQLNELL  289

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
              +P         Q ++ SATL S  V   ++  +  P  V L  E  V + +  + + V
Sbjct  290  GSLPTA------RQTLLFSATLPSSLV-DFAKAGLTNPVLVRLDTETKVSENLEMLFLSV  342

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM--  506
                           +    V  ++  +         ++       +    + K  +   
Sbjct  343  KNDEREANLLYLLQEVIKIPVATEEQLQRFRKQSNDDADDSDDETDKKKKHSKKSKQPLP  402

Query  507  --------DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNL  558
                    +  IIF  T+   + +       G         +    L+G    H R+Q L
Sbjct  403  SAKDMPSPNSTIIFVSTRHHVEYVSNLLKDCG---------YLVSYLYGTLDQHARRQQL  453

Query  559  ERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
              F+ G    L+ TDVAARG+DI  +  V+N++LP   + +VHR+GR  RA   G A ++
Sbjct  454  HNFRCGLTNILVVTDVAARGVDIPLLANVVNMSLPASSKIFVHRVGRTARAGNKGWAYTI  513

Query  619  VATEKEKVWYHVCSSRGKGCYNTRLKE  645
            ++  +      +    GK    T + E
Sbjct  514  LSESELPYLLDLELFLGKKVLLTPMYE  540


 Score = 105 bits (261),  Expect = 7e-22, Method: Composition-based stats.
 Identities = 32/105 (30%), Positives = 49/105 (47%), Gaps = 7/105 (7%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F+  G+   I   +    +  PT IQ ++IPLIL   D++  A TGSGKT AF +P+I+
Sbjct  121  SFASFGLSKFILGNISRKGFRQPTPIQRKTIPLILQQRDIVGMARTGSGKTAAFVLPLIE  180

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
             +          K G   +    S   +  M  +     FA GS+
Sbjct  181  KL-----KMHSAKIGARAM--ILSPSRELAMQTHKVFKEFAKGSN  218


>sp|Q09181|DHH1_SCHPO Putative ATP-dependent RNA helicase ste13 
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 
GN=ste13 PE=3 SV=1
Length=485

 Score = 285 bits (730),  Expect = 5e-87, Method: Composition-based stats.
 Identities = 106/420 (25%), Positives = 172/420 (41%), Gaps = 64/420 (15%)

Query  254  GFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI  313
            G   L++A +G   K+       + +     +  + LI+ P+RELA QT    K   K++
Sbjct  81   GRDILARAKNG-TGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHM  139

Query  314  DNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEAD  373
            +   ++ ++  GG   RD +  L + V IVVGTPGR+ DL   G  + S+    V+DEAD
Sbjct  140  N---VKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEAD  196

Query  374  GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG  433
             LLS  ++  I ++ +  P      K  Q+ + SAT     VK   +K ++ P  ++L  
Sbjct  197  KLLSPEFTPIIEQLLSYFP------KNRQISLYSATFP-LIVKNFMDKHLNKPYEINLM-  248

Query  434  EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK  493
            ++     V      V+                                    S+ +  L 
Sbjct  249  DELTLRGVTQYYAFVDE-----------------------------------SQKVHCLN  273

Query  494  GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
              +      + +++Q+IIFC +    + L +   + G         +SC   H       
Sbjct  274  TLF-----SKLQINQSIIFCNSTNRVELLAKKITELG---------YSCFYSHAKMLQSH  319

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
            R +    F+ G  R L+C+D+  RGIDI  V  VIN   P   + Y+HRIGR GR    G
Sbjct  320  RNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRG  379

Query  614  LAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQV  673
            LAIS ++       Y + +  G          D    ++ N      +I   L  +  QV
Sbjct  380  LAISFISWADRFNLYRIENELGTEIQPIPPSIDPSLYVFPNGD---YQIPRPLTASADQV  436


 Score = 98.3 bits (243),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 25/93 (27%), Positives = 39/93 (42%), Gaps = 9/93 (10%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F +  +  E+   + E  +  P+ IQ ESIP+ L G D+L  A+ G+GKT AF IP +
Sbjct  44   TEFEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSL  103

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
            + V       Q                 +  + 
Sbjct  104  EKVDTKKSKIQT---------LILVPTRELALQ  127


>sp|Q5F485|DDX42_CHICK ATP-dependent RNA helicase DDX42 OS=Gallus 
gallus OX=9031 GN=DDX42 PE=2 SV=1
Length=944

 Score = 297 bits (760),  Expect = 5e-87, Method: Composition-based stats.
 Identities = 95/390 (24%), Positives = 154/390 (39%), Gaps = 59/390 (15%)

Query  247  FKFPPKDGFVALSKAPDGYIVKS-QHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLN  304
                     + ++K   G             + Q +  P + P A+IV P+REL +Q  +
Sbjct  285  PVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHS  344

Query  305  NIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQV  364
              K+F K  +   LR + + GG +  +Q   L+ G +IVV TPGRL D V     NL +V
Sbjct  345  ECKRFGKAYN---LRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRV  401

Query  365  RFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH  424
             +LV DEAD +   G+   +  + + +          Q ++ SAT     ++KL+  I+ 
Sbjct  402  TYLVFDEADRMFDMGFEYQVRSIASHV------RPDRQTLLFSATF-RKKIEKLARDILI  454

Query  425  FPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEM  484
             P  V         + V  +V  + P     W  L +                       
Sbjct  455  DPIRVVQGDIGEANEDVTQIV-EIFPSGPSKWNWLTR-----------------------  490

Query  485  WSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC  544
                          R ++       ++F   K + + L     Q+           +   
Sbjct  491  --------------RLVEFTSSGSVLLFVTKKANAEELANNLKQE---------DHNLGL  527

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            LHGD    ER + +  FKK  +  L+ TDVAARG+DI  +  VIN  +  +   + HRIG
Sbjct  528  LHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIG  587

Query  605  RVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            R GRA   G+A +L+  +       +  + 
Sbjct  588  RTGRAGEKGVAYTLLTPKDSNFAGDLVRNL  617


 Score = 105 bits (261),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 4/104 (4%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            ++F+  G   ++   + + ++  PT IQ + +P+ + G D++  A+TGSGKT AF  P++
Sbjct  253  SSFARFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPML  312

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG  105
              +     DQ+E + G   I        +     +     F   
Sbjct  313  IHIM----DQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKA  352


>sp|Q5R6D8|DDX46_PONAB Probable ATP-dependent RNA helicase DDX46 
OS=Pongo abelii OX=9601 GN=DDX46 PE=2 SV=1
Length=1032

 Score = 298 bits (764),  Expect = 6e-87, Method: Composition-based stats.
 Identities = 92/455 (20%), Positives = 177/455 (39%), Gaps = 71/455 (16%)

Query  213  GLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHS  272
            G++ +I   +K         ++   +                 + ++K   G  +     
Sbjct  378  GISMKILNSLKKHGYEKPTPIQTQAIPAIMS--------GRDLIGIAKTGSGKTIAFLLP  429

Query  273  G--NAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
               +    ++      P A+I+ P+RELA Q     K+F K +    LR + + GG    
Sbjct  430  MFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLG---LRVVCVYGGTGIS  486

Query  331  DQLSVLENGVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRM  387
            +Q++ L+ G +I+V TPGR+ D+++       NL +V ++VLDEAD +   G+   + R+
Sbjct  487  EQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRI  546

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
             + +          Q ++ SAT     ++ L  +I+  P  V + G   V   V   V+ 
Sbjct  547  VDNV------RPDRQTVMFSATFPRA-MEALVRRILSKPIEVQVGGRSVVCSDVEQQVIV  599

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
            +  +   L       H +                                       +  
Sbjct  600  IEEEKKFLKLLELLGHYQ---------------------------------------ESG  620

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
              IIF   +   D L +  ++           + C+ LHG    ++R   +  FK G  +
Sbjct  621  SVIIFVDKQEHADGLLKDLMRA---------SYPCMSLHGGIDQYDRDSIINDFKNGTCK  671

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             L+ T VAARG+D+  +  V+N + P+  ++YVHR GR GRA   G A + +  ++ +  
Sbjct  672  LLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYA  731

Query  628  YHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEI  662
              +  +            +   + + ++ +   +I
Sbjct  732  GDIIKALELSGTAVPPDLEKLWSDFKDQQKAEGKI  766


 Score = 114 bits (285),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 15/140 (11%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + ++ + G+  +I  ++++  +  PT IQ ++IP I+ G D++  A+TGSGKT AF +P+
Sbjct  371  IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM  430

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI----------GSDGLC  110
             + +     DQ+  ++G+  I    +   +  +        F+           G  G+ 
Sbjct  431  FRHIM----DQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGIS  486

Query  111  CQSREVKE-WHGCRATKGLM  129
             Q  E+K        T G M
Sbjct  487  EQIAELKRGAEIIVCTPGRM  506


>sp|P23128|DDX6_DROME ATP-dependent RNA helicase me31b OS=Drosophila 
melanogaster OX=7227 GN=me31B PE=1 SV=3
Length=459

 Score = 284 bits (727),  Expect = 7e-87, Method: Composition-based stats.
 Identities = 98/409 (24%), Positives = 168/409 (41%), Gaps = 69/409 (17%)

Query  236  AELKFNFGEEEFKFPPKDGFVALSKAPDGY-IVKSQHSGNAQ--------VTQTKFLPNA  286
             EL     E+ ++ P      A+  A  G  ++    +G  +        + Q     + 
Sbjct  67   RELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQIDPTKDY  126

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
             +AL++ P+RELA QT     +  K++D   +R ++  GG   +D +  +   V +++ T
Sbjct  127  IQALVMVPTRELALQTSQICIELAKHLD---IRVMVTTGGTILKDDILRIYQKVQLIIAT  183

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            PGR+ DL+     ++S  R LVLDEAD LLS  +   ++ +  ++P      K  Q+++ 
Sbjct  184  PGRILDLMDKKVADMSHCRILVLDEADKLLSLDFQGMLDHVILKLP------KDPQILLF  237

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SAT     VK   EK +  P  ++L  E+     V      V  +               
Sbjct  238  SATFP-LTVKNFMEKHLREPYEINLM-EELTLKGVTQYYAFVQERQ--------------  281

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                                      K         + +++Q+IIFC +    + L +  
Sbjct  282  --------------------------KVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKI  315

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
             + G         + C  +H       R +    F++G  R L+C+D+  RGID+  V  
Sbjct  316  TELG---------YCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLFTRGIDVQAVNV  366

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRG  635
            VIN   P   + Y+HRIGR GR   +G+AI+L+  E     + +    G
Sbjct  367  VINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIEKELG  415


 Score = 96.0 bits (237),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 35/148 (24%), Positives = 59/148 (40%), Gaps = 8/148 (5%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F E  +  E+   + E  W  P+ IQ  +IP+ L G DVL  A+ G+GKTGA+ IPV++ 
Sbjct  60   FEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ  119

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNK--WQMNPYDRGSAFAIGSDGLCCQS--REVKEW  119
            +  T    Q         +  A   ++   ++  +            +      R  ++ 
Sbjct  120  IDPTKDYIQALV--MVPTRELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRIYQKV  177

Query  120  HGCRATKGLMKGKHYYEVSCHDQGLCRV  147
                AT G +      +    D   CR+
Sbjct  178  QLIIATPGRILD--LMDKKVADMSHCRI  203


>sp|Q7S5R1|DBP3_NEUCR ATP-dependent RNA helicase dbp-3 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=dbp-3 PE=3 SV=1
Length=614

 Score = 289 bits (739),  Expect = 7e-87, Method: Composition-based stats.
 Identities = 112/397 (28%), Positives = 174/397 (44%), Gaps = 50/397 (13%)

Query  246  EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN--------APKALIVEPSRE  297
             F        + +++   G  +        +   ++  P          P+A+IV P+RE
Sbjct  211  PFSL-SGRDVIGIAETGSGKTMAF-SLPCVESLASRPKPKFNSRDRTAHPRAVIVSPTRE  268

Query  298  LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL--ENGVDIVVGTPGRLDDLVS  355
            LA QT   +      +    L  + I GG    +Q ++L   NGVDI+  TPGRL D +S
Sbjct  269  LAMQTHAALSGLASLVG---LSAVCIFGGSDKNEQRNLLYKNNGVDIITATPGRLKDFLS  325

Query  356  TGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDV  415
             G ++L+ V F VLDEAD +L +G+S+ I  + +  P      ++ Q ++ +AT    D+
Sbjct  326  EGSISLANVSFAVLDEADRMLDRGFSEDIKLILSGCP----PKEQRQTLMFTATWP-LDI  380

Query  416  KKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNT  475
            +KL+E  M  P  V +                           L  +      V   D  
Sbjct  381  QKLAESYMINPAQVTIGHRTRAG----------GDGEGNGNIELQANSRIEQKVEVVDPR  430

Query  476  RPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDK  535
                   E+  EA K              K D+ ++FC  K +   +EQ+  ++G     
Sbjct  431  GKEFRLYELLKEAQK-----------GSQKDDRILVFCLYKKEAVRVEQFLSRKG-----  474

Query  536  KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDE  595
                     +HGD +  +R ++LE FK G    L+ TDVAARG+DI  V  VINVT P  
Sbjct  475  ----IKVASIHGDLRQDQRTRSLEAFKSGTTTVLVATDVAARGLDIPEVKLVINVTFPLT  530

Query  596  KQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
             ++YVHRIGR GRA ++G AI+L     +     + +
Sbjct  531  IEDYVHRIGRTGRAGKLGKAITLFTEHDKAHSGSLVN  567


 Score = 92.1 bits (227),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 30/105 (29%), Positives = 47/105 (45%), Gaps = 2/105 (2%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  FS++     I++      +  PT IQ+ S P  L G DV+  AETGSGKT AFS+P 
Sbjct  179  IMNFSQLPQSNLISKNPFAA-YTNPTPIQSASWPFSLSGRDVIGIAETGSGKTMAFSLPC  237

Query  61   IQIVYETLKDQQEGK-KGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            ++ +    K +   + +         S   +  M  +   S  A 
Sbjct  238  VESLASRPKPKFNSRDRTAHPRAVIVSPTRELAMQTHAALSGLAS  282


>sp|A6SFV4|DBP8_BOTFB ATP-dependent RNA helicase dbp8 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=dbp8 PE=3 SV=1
Length=545

 Score = 287 bits (734),  Expect = 8e-87, Method: Composition-based stats.
 Identities = 114/464 (25%), Positives = 171/464 (37%), Gaps = 71/464 (15%)

Query  224  NQALFPACVLKNAELKFNFGEEEFKFPPKDG---FVALSKAPDGYIVKSQHSGNAQVTQT  280
             Q  F A  +K   L  + G    K P          + K  D        SG       
Sbjct  114  AQTTFAALNVK-PWLVGSLGSMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAV  172

Query  281  KFL------PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLS  334
              L      P    AL++ P+RELA Q     +QFK       L+ +LI GG   R Q +
Sbjct  173  PILQKWAEDPFGIFALVLTPTRELALQIY---EQFKAISSPQSLKAVLITGGSDMRPQAT  229

Query  335  VLENGVDIVVGTPGRLDDLVSTGKLN----LSQVRFLVLDEADGLLSQG-YSDFINRMHN  389
             L     IV+ TPGRL D + T   +    L +VR +VLDEAD LL+ G     +  +  
Sbjct  230  ALAQRPHIVIATPGRLADHIRTSGEDTIGALRRVRMVVLDEADRLLASGSVGSMLPDVEE  289

Query  390  QIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN  449
             +  +    K  Q ++ +AT+               P    LK     P  +   V  V+
Sbjct  290  CLSILPPPAK-RQTLLFTATVT--------------PEVRALKDMPRTPGKLPVFVCEVD  334

Query  450  PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA  509
             +   +   L + H++    H +                             +++     
Sbjct  335  TQALAIPPSLNQMHLQVPVTHREHYLHMFL--------------------LTEKNLPKSI  374

Query  510  IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL  569
            +IFC      D L                      LH      +R  NL RF+    R L
Sbjct  375  VIFCNRTATADYLTHLLRLL---------DHRVTALHSKLPQRQRIDNLGRFRASAARIL  425

Query  570  ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            + TDVAARG+DI  V  VIN  +P +  +Y+HR+GR  RA R G A+S V     ++   
Sbjct  426  VATDVAARGLDIPEVGLVINYDIPRDPDDYIHRVGRTARAGRKGEAVSFVGQRDVQLIQA  485

Query  630  VCSSRGKGCY---------NTRLKEDGGCTIWYNEMQLLSEIEE  664
            + +  G+             TR+  +    +   + + + EIEE
Sbjct  486  IENRVGRQMEAWAEDGVNLETRVIRESLKLVGEKKREAMLEIEE  529


 Score = 96.0 bits (237),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 44/103 (43%), Gaps = 9/103 (9%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F+ + V P +  ++  M    PT IQ   IP IL G D +  + TGSGKT AF++P++
Sbjct  116  TTFAALNVKPWLVGSLGSMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPIL  175

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            Q   E                   +   +  +  Y++  A + 
Sbjct  176  QKWAE---------DPFGIFALVLTPTRELALQIYEQFKAISS  209


>sp|Q0CLX0|PRP28_ASPTN Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) 
OX=341663 GN=prp28 PE=3 SV=1
Length=783

 Score = 293 bits (750),  Expect = 8e-87, Method: Composition-based stats.
 Identities = 97/384 (25%), Positives = 160/384 (42%), Gaps = 74/384 (19%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P A+++ P+RELA+Q     K   K+        + I+GG +  +Q   L NG +I++
Sbjct  420  DGPYAIVLAPTRELAQQIEIEAK---KFTIPLGFTVVSIVGGHSLEEQAYSLRNGAEIII  476

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT---------  395
             TPGRL D +    L LSQ  ++++DEAD ++  G+ + +N++ + +P            
Sbjct  477  ATPGRLVDCIERRLLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEKPDSDAAE  536

Query  396  --------------SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV  441
                           D +  Q ++ +AT+ +  V++++ K +  P  V +       DTV
Sbjct  537  NAAAMSQLHHAGGGRDTRYRQTMMYTATMPTA-VERIARKYLRRPAIVTIGSAGEAVDTV  595

Query  442  HHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI  501
               V         L     K   R  D+ +    RP                        
Sbjct  596  EQRV--------ELIAGEDKRKKRLGDILSSGEFRPP-----------------------  624

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
                    I+F   K +CD + +   Q G         FS V LHG +   +R+  L   
Sbjct  625  -------IIVFVNIKRNCDAIAREIKQWG---------FSSVTLHGSKTQEQREAALASV  668

Query  562  KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT  621
            + G    L+ TD+A RGID+  V  V+N  +    ++Y HRIGR GRA + G+AI+ +  
Sbjct  669  RNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATSIESYTHRIGRTGRAGKSGVAITFLGN  728

Query  622  EKEKVWYHVCSSRGKGCYNTRLKE  645
            E   V Y +     K   +    E
Sbjct  729  EDADVMYDLKQMLIKSPISRVPDE  752


 Score = 109 bits (271),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 27/105 (26%), Positives = 48/105 (46%), Gaps = 1/105 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M +++E G+   +   V  + +  PT IQ  +IP+ +   D++  A TGSGKT AF +P+
Sbjct  342  MRSWAESGLPSRLLDLVHRVGYKDPTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPL  401

Query  61   IQIVYETLK-DQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            +  + E  + D+ E +K         +   +           F I
Sbjct  402  LVYIAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFTI  446


>sp|Q54TJ4|DDX27_DICDI Probable ATP-dependent RNA helicase ddx27 
OS=Dictyostelium discoideum OX=44689 GN=ddx27 PE=3 SV=1
Length=783

 Score = 293 bits (750),  Expect = 8e-87, Method: Composition-based stats.
 Identities = 116/479 (24%), Positives = 193/479 (40%), Gaps = 71/479 (15%)

Query  226  ALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP-  284
              F    L    LK    +  F  P      A+  A +G  + +  S  +  T    LP 
Sbjct  190  PTFEELHLSRPLLK-AVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPV  248

Query  285  -----------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQL  333
                        A + LI+ P+RELA Q  + ++   ++     +   LI+GG++ + Q 
Sbjct  249  LERLLFRDSEYRAIRVLILLPTRELALQCQSVMENLAQF---SNITSCLIVGGLSNKAQE  305

Query  334  SVLENGVDIVVGTPGRLDD-LVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP  392
              L    D+V+ TPGRL D L++   + L  +  L+LDEAD LL  G+ D IN++    P
Sbjct  306  VELRKSPDVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIVESCP  365

Query  393  QVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKT  452
                     Q ++ SATL+  +VK L++  +  P  V +     V  T+    V + P+ 
Sbjct  366  T------NRQTMLFSATLND-EVKTLAKLSLQQPIRVQVDALMQVTSTLEQEFVKIKPQ-  417

Query  453  DRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF  512
                                             S+   IL         +       IIF
Sbjct  418  -------------------------------HLSDRPAILLSLCTRVFNQ----GGTIIF  442

Query  513  CRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICT  572
            CR+K +   L   F                  LHG+    +R  +L++F+ G V +L+ +
Sbjct  443  CRSKKEVHRLRIIFGL---------SDLKAAELHGNLSQEQRFDSLQQFRDGQVNYLLAS  493

Query  573  DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
            DVA+RG+DI GV  VIN  +P+   NY+HR+GR  RA   G + S +     K+   +  
Sbjct  494  DVASRGLDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKLLKDIV-  552

Query  633  SRGKGCYNTRLKEDGGCTIWYNEMQLLSE-IEEHLNCTISQVEPDIKVPVDEFDGKVTY  690
            ++ +    +R         W N ++ L+E I+  +   + + +        +   K+  
Sbjct  553  TKARNKAKSRSVSQDNVNFWRNRIEELTEDIKSIVREEMKEADLRKAEKTLDKAEKIIS  611


 Score = 105 bits (263),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 52/111 (47%), Gaps = 6/111 (5%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E+ +   + +AV+++ +  PT IQA++IPL L G D+L +A TGSGKT AF +PV
Sbjct  189  LPTFEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPV  248

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
            ++ +     + +                 +  +         A  S+   C
Sbjct  249  LERLLFRDSEYR------AIRVLILLPTRELALQCQSVMENLAQFSNITSC  293


>sp|A2QIL2|PRP28_ASPNC Pre-mRNA-splicing ATP-dependent RNA helicase 
prp28 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 
513.88 / FGSC A1513) OX=425011 GN=prp28 PE=3 SV=1
Length=810

 Score = 293 bits (751),  Expect = 9e-87, Method: Composition-based stats.
 Identities = 91/381 (24%), Positives = 156/381 (41%), Gaps = 71/381 (19%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            + P A+++ P+RELA+Q     K   K+        + I+GG +  +Q   L +G +I++
Sbjct  449  DGPYAIVLAPTRELAQQIEIEAK---KFTGPLGFNVVSIVGGHSLEEQAYSLRDGAEIII  505

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG------  398
             TPGRL D +    L LSQ  ++++DEAD ++  G+ + +N++ + +P            
Sbjct  506  ATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEKPDSEDAE  565

Query  399  --------------KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
                          +  Q ++ +AT+ +  V++++ K +  P  V +       DTV   
Sbjct  566  NPLAMSRHINHDQHRYRQTMMYTATMPTA-VERIARKYLRRPAIVTIGSAGEAVDTVEQR  624

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
            V  +  +  R                                      K           
Sbjct  625  VEMIAGEDKR--------------------------------------KKRLGDILSSGE  646

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
                 I+F   K +CD + +   Q G         FS V LHG +   +R+  L   + G
Sbjct  647  FRAPIIVFVNIKRNCDAIAREIKQWG---------FSSVTLHGSKTQDQREAALASVRNG  697

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
                L+ TD+A RGID+  V  V+N  +    ++Y HRIGR GRA + G+AI+ +  E  
Sbjct  698  TTDVLVATDLAGRGIDVPDVSLVVNFNMATSIESYTHRIGRTGRAGKSGVAITFLGNEDA  757

Query  625  KVWYHVCSSRGKGCYNTRLKE  645
             V Y +     K   +   +E
Sbjct  758  DVMYDLKQMLMKSPISRVPEE  778


 Score = 111 bits (277),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 1/104 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M ++ E  +   + + +  + +  PT IQ  +IP+ +   D++  A TGSGKT AF +P+
Sbjct  371  MRSWDESNLPKRLMELINRVGYKEPTPIQRAAIPIAMQNRDLIGVAVTGSGKTAAFLLPL  430

Query  61   IQIVYETLK-DQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
            +  + E  + D+ E +K         +   +           F 
Sbjct  431  LCYIAELPRIDEFEWRKADGPYAIVLAPTRELAQQIEIEAKKFT  474


>sp|Q553B1|DDX46_DICDI ATP-dependent RNA helicase ddx46 OS=Dictyostelium 
discoideum OX=44689 GN=helB1 PE=2 SV=1
Length=1151

 Score = 300 bits (767),  Expect = 9e-87, Method: Composition-based stats.
 Identities = 102/418 (24%), Positives = 170/418 (41%), Gaps = 67/418 (16%)

Query  252  KDGFVALSKAPDGYIVKSQHSG-NAQVTQTKFLPN-APKALIVEPSRELAEQTLNNIKQF  309
                + +++   G  +          + Q K  P     ALI+ P+RELA Q     K+F
Sbjct  546  GRDLIGIARTGSGKTLAFLLPMFRHILAQPKSAPGEGMIALIMSPTRELALQIHVECKKF  605

Query  310  KKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV---STGKLNLSQVRF  366
             K +    LR   + GG +  +Q++ L+ G DIVV TPGR+ D++   +    NL +V F
Sbjct  606  SKVLG---LRTACVYGGASISEQIAELKRGADIVVCTPGRMIDILCANNRRITNLRRVTF  662

Query  367  LVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFP  426
            LVLDEAD +   G+   IN + + I          Q I+ SAT     V+ +++KI++ P
Sbjct  663  LVLDEADRMFDMGFGPQINCIVDSI------RPDRQTIMFSATFPP-KVENVAKKILNKP  715

Query  427  TWVDLKGEDSVPDTVHHVVV--PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEM  484
              +   G   V   +   V   P   +  RL E L   + +                   
Sbjct  716  LEIIAGGRSIVSSDIEQFVEVRPTETRFRRLIELLSIWYHK-------------------  756

Query  485  WSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC  544
                                   Q +IF   +   DNL +              Q+ C+ 
Sbjct  757  ----------------------GQILIFTNRQETTDNLYRQL---------SNSQYQCLS  785

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            LHG +   +R + +  FK      LI T +A+RG+DI  +  V+N   PD  ++YVHR+G
Sbjct  786  LHGSKDQTDRDETISDFKNKVKTILIATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRVG  845

Query  605  RVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEI  662
            R GRA   G A + +  ++E+    +  +  +       +       +  + +   ++
Sbjct  846  RTGRAGNRGTAYTFITPDEERFSSSIIKALEQSGSKVPDELRKLNDTYEKKRKEGKDV  903


 Score = 104 bits (258),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 4/104 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + ++++ G+  ++   +++  +  PT IQA++IP I+ G D++  A TGSGKT AF +P+
Sbjct  508  IQSWAQAGLTEKVHLLLKKFQYEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPM  567

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
             + +    K       G+  I    S   +  +  +     F+ 
Sbjct  568  FRHILAQPK----SAPGEGMIALIMSPTRELALQIHVECKKFSK  607


>sp|Q6CT49|PRP28_KLULA Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 
GN=PRP28 PE=3 SV=1
Length=539

 Score = 287 bits (733),  Expect = 9e-87, Method: Composition-based stats.
 Identities = 97/377 (26%), Positives = 163/377 (43%), Gaps = 60/377 (16%)

Query  253  DGFVALSKAPDGYIVKSQHSGNAQVTQTKFL-----PNAPKALIVEPSRELAEQTLNNIK  307
              F+ ++    G  +        ++     L      + P AL++ P+RELA+Q  +  +
Sbjct  176  RDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQ  235

Query  308  QFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFL  367
               K    P    + I+GG +  +  + L +G DI+V TPGRL D + +  L L QV  L
Sbjct  236  SITKLWKRP-CNIVSIVGGHSLEEISANLRDGCDILVATPGRLLDCLDSHLLFLKQVNTL  294

Query  368  VLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPT  427
            VLDEAD ++  G+ D +  +  +    T      Q ++ +AT  S  ++K++   +  P+
Sbjct  295  VLDEADKMIDFGFEDQLTTILAK----TETISNRQTMMFTATF-SPTIEKVANGYLKKPS  349

Query  428  WVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSE  487
            +V + GE+S P  +  +V  V  + ++L                                
Sbjct  350  YVTVGGEESKPK-IKQIVRYVPDEEEKL--------------------------------  376

Query  488  AIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHG  547
                   +  V+    +     IIF   K   D L     +          +F    LHG
Sbjct  377  -------KILVKDFLPNYKAPIIIFINYKRTADWLFDKLREA---------RFRATTLHG  420

Query  548  DRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVG  607
             +   +R+ +L   + G V  LI TDVA RGIDI  V  V+N+  P    ++VHR+GR G
Sbjct  421  SKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVGRTG  480

Query  608  RAERMGLAISLVATEKE  624
            RA + G A++ +  E++
Sbjct  481  RAGKTGTALTFLTEEED  497


 Score = 82.1 bits (201),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 22/106 (21%), Positives = 44/106 (42%), Gaps = 3/106 (3%)

Query  1    MAAFSEMGVMPEIAQAV--EEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSI  58
            +  + E+ ++PE    +   ++ +  PT IQ  +IP ++   D +  A TGSGKT AF +
Sbjct  135  LRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLL  194

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            P++  +   +       K    +    +   +        G +   
Sbjct  195  PILIKL-HGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITK  239


>sp|Q40466|IF413_TOBAC Eukaryotic initiation factor 4A-13 (Fragment) 
OS=Nicotiana tabacum OX=4097 PE=2 SV=1
Length=355

 Score = 280 bits (717),  Expect = 9e-87, Method: Composition-based stats.
 Identities = 96/439 (22%), Positives = 169/439 (38%), Gaps = 99/439 (23%)

Query  166  GFGGTGKKSHNKQFDNYGEEFT---MHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHM  222
            G    G +   +Q+D    E       +    Y ++                        
Sbjct  3    GLAPEGSQFDARQYDAKMTELLGTEQEEFFTSYDEVYDS---------------------  41

Query  223  KNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQ----  276
                 F A  L+   L+  + +G E+     + G V   K  D  +++   SG  +    
Sbjct  42   -----FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLD--VIQQAQSGTGKTATF  94

Query  277  ----VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQ  332
                + Q  +     +AL++ P+RELA+Q    ++    Y+    ++    +GG + R+ 
Sbjct  95   CSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLG---VKVHACVGGTSVRED  151

Query  333  LSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP  392
              +L++GV +VVGTPGR+ D++    L    ++  VLDEAD +LS+G+ D I  +   +P
Sbjct  152  QRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLP  211

Query  393  QVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKT  452
                   ++QV V SAT+   +  +++ K M+ P  + +K +D   + +    V V+ + 
Sbjct  212  ------PKIQVGVFSATMPP-EALEITRKFMNQPVRILVKRDDVTLEGIKQFYVNVDKEE  264

Query  453  DRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF  512
             +L                                       E      +   + Q++IF
Sbjct  265  WKL---------------------------------------ETLCDLYETLAITQSVIF  285

Query  513  CRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICT  572
              T+   D L             +    +    HGD   + R   +  F+ G  R LI T
Sbjct  286  VNTRRKVDWLTDKM---------RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITT  336

Query  573  DVAARGIDIHGVPYVINVT  591
            D+ ARGID+  V  VIN  
Sbjct  337  DLLARGIDVQQVSLVINYD  355


 Score = 81.3 bits (199),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 20/70 (29%), Positives = 35/70 (50%), Gaps = 0/70 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F  MG+   + + +    +  P+ IQ   I     G DV+  A++G+GKT  F   V+Q
Sbjct  41   SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQ  100

Query  63   IVYETLKDQQ  72
             +  +L + Q
Sbjct  101  QLDYSLVECQ  110


>sp|Q5R7D1|DDX42_PONAB ATP-dependent RNA helicase DDX42 OS=Pongo 
abelii OX=9601 GN=DDX42 PE=2 SV=1
Length=942

 Score = 296 bits (758),  Expect = 1e-86, Method: Composition-based stats.
 Identities = 96/390 (25%), Positives = 156/390 (40%), Gaps = 59/390 (15%)

Query  247  FKFPPKDGFVALSKAPDGYIVKS-QHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLN  304
                     + ++K   G             + Q +  P + P A+IV P+REL +Q   
Sbjct  285  PVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHA  344

Query  305  NIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQV  364
              K+F K  +   LR + + GG +  +Q   L+ G +IVV TPGRL D V     NL +V
Sbjct  345  EGKRFGKAYN---LRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRV  401

Query  365  RFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH  424
             +LV DEAD +   G+   +  + + +          Q ++ SAT     ++KL+  I+ 
Sbjct  402  SYLVFDEADRMFDMGFEYQVRSIASHV------RPDRQTLLFSATF-RKKIEKLARDILI  454

Query  425  FPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEM  484
             P  V         + V  +V  ++    + W  L +                       
Sbjct  455  DPIRVVQGDIGEANEDVTQIVEILHSGPSK-WNWLTR-----------------------  490

Query  485  WSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC  544
                          R ++       ++F   K + + L     Q+G          +   
Sbjct  491  --------------RLVEFTSSGSVLLFVTKKANAEELANNLKQEG---------HNLGL  527

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            LHGD    ER + +  FKK D+  L+ TDVAARG+DI  +  VIN  +  +   + HRIG
Sbjct  528  LHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIG  587

Query  605  RVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            R GRA   G+A +L+  +       +  + 
Sbjct  588  RTGRAGEKGVAYTLLTPKDSNFAGDLVRNL  617


 Score = 109 bits (271),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 27/104 (26%), Positives = 49/104 (47%), Gaps = 4/104 (4%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            ++F+  G   ++   + + ++  PT IQ + +P+ L G D++  A+TGSGKT AF  P++
Sbjct  253  SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML  312

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG  105
              +     DQ+E + G   I        +     +  G  F   
Sbjct  313  IHIM----DQKELEPGDGPIAVIVCPTRELCQQIHAEGKRFGKA  352


>sp|A3LSN3|DRS1_PICST ATP-dependent RNA helicase DRS1 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DRS1 PE=3 SV=3
Length=741

 Score = 292 bits (747),  Expect = 1e-86, Method: Composition-based stats.
 Identities = 96/472 (20%), Positives = 185/472 (39%), Gaps = 64/472 (14%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             + L L+  +   +          +++A +                 VA +    G    
Sbjct  224  FQTLQLSRPVLKGLSQLGYTKPSPIQSASIPIAL--------LGRDIVAGAVTGSGKTAA  275

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
                   ++        + + +++ P+RELA Q  +  K+  ++++N  L   L +GG+ 
Sbjct  276  YMIPIIERLLYKPSKVASTRVIVLTPTRELAIQVGDVGKKIGQFVNN--LNFGLAVGGLN  333

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFINRM  387
             R Q   L++  D+V+ TPGRL D + ++   ++  +  LV+DEAD +L +G+   +  +
Sbjct  334  LRQQEQQLKSRPDVVIATPGRLIDHIRNSPSFSIDSLEVLVIDEADRMLDEGFQVELTEI  393

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
             + IP+      + Q ++ SAT+++  ++ L +  +  P  + +    +    +    V 
Sbjct  394  LSLIPKN-----KRQTLLFSATMNT-KIQDLIQLSLQRPVRIMIDPPKTAATKLTQEFVR  447

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
            +  +       L +                                    ++ +   +  
Sbjct  448  IRKRDHLKPALLFQ-----------------------------------LLKKLDPAQQS  472

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
            + ++F   K     L       G              LHG     +R  N+  FKK  V 
Sbjct  473  RIVVFVSRKESAHKLRIVLGLLG---------MKVSELHGSLTQEQRLNNVNDFKKLIVP  523

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             LICTD+AARG+DI  +  VIN  +P   + Y+HR+GR  RA R G +IS V        
Sbjct  524  VLICTDLAARGLDIPKIEIVINYDMPKSHEVYLHRVGRTARAGRDGTSISFVGESTSD--  581

Query  628  YHVCSSRGKGCYNTRLK-EDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIK  678
             ++     K      +K +     I + +++ L++I E     I +V  + K
Sbjct  582  RNIVKDAIKSLEGGEVKGKAVSRNIDWVDVEQLNKIVESKQEIIEEVLDEEK  633


 Score = 101 bits (251),  Expect = 8e-21, Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 6/108 (6%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F  + +   + + + ++ +  P+ IQ+ SIP+ L G D++  A TGSGKT A+ IP+I
Sbjct  222  TTFQTLQLSRPVLKGLSQLGYTKPSPIQSASIPIALLGRDIVAGAVTGSGKTAAYMIPII  281

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGL  109
            + +           K  +T     +   +  +   D G       + L
Sbjct  282  ERLLYKPS------KVASTRVIVLTPTRELAIQVGDVGKKIGQFVNNL  323


>sp|Q0IHV9|DDX6_XENTR Probable ATP-dependent RNA helicase ddx6 
OS=Xenopus tropicalis OX=8364 GN=ddx6 PE=2 SV=1
Length=481

 Score = 284 bits (727),  Expect = 1e-86, Method: Composition-based stats.
 Identities = 97/433 (22%), Positives = 170/433 (39%), Gaps = 66/433 (15%)

Query  210  KDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKS  269
            KDL +        K       C+ +   +       E   P ++  + ++ +    + ++
Sbjct  80   KDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARA  139

Query  270  QHSGN-------AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
            ++            + +     +  +A+++ P+RELA Q      Q  K++    ++ + 
Sbjct  140  KNGTGKSGAYLIPLLERLDLKKDCIQAMVIVPTRELALQVSQICIQVSKHMGG--VKVMA  197

Query  323  IIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD  382
              GG   RD +  L++ V +V+ TPGR+ DL+  G   +  ++ +VLDEAD LLSQ +  
Sbjct  198  TTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHIQMIVLDEADKLLSQDFVQ  257

Query  383  FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH  442
             +  +   +P      K  Q+++ SAT     V+K     +  P  ++L  E+     V 
Sbjct  258  IMEDIIITLP------KNRQILLYSATFP-LSVQKFMTSHLQKPYEINLM-EELTLKGVT  309

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
                 V  +                                         K         
Sbjct  310  QYYAYVTERQ----------------------------------------KVHCLNTLFS  329

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
              +++Q+IIFC +    + L +   Q G         +SC  +H   +   R +    F+
Sbjct  330  RLQINQSIIFCNSSQRVELLAKKISQLG---------YSCFYIHAKMRQEHRNRVFHDFR  380

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             G  R L+CTD+  RGIDI  V  VIN   P   + Y+HRIGR GR   +GLAI+L+  +
Sbjct  381  NGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYD  440

Query  623  KEKVWYHVCSSRG  635
                   +    G
Sbjct  441  DRFNLKSIEEQLG  453


 Score = 91.7 bits (226),  Expect = 4e-18, Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 39/61 (64%), Gaps = 0/61 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +  +  E+   + EM W  P+ IQ ESIP+ L G D+L  A+ G+GK+GA+ IP+++ 
Sbjct  97   FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER  156

Query  64   V  64
            +
Sbjct  157  L  157


>sp|Q5ZHZ0|DX39B_CHICK Spliceosome RNA helicase DDX39B OS=Gallus 
gallus OX=9031 GN=DDX39B PE=2 SV=1
Length=428

 Score = 282 bits (722),  Expect = 1e-86, Method: Composition-based stats.
 Identities = 105/491 (21%), Positives = 188/491 (38%), Gaps = 105/491 (21%)

Query  190  DTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKF  249
            D  G Y+ I       S   +D  L  E+   + +        +++  +           
Sbjct  34   DVKGSYVSIH------SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIP----------  77

Query  250  PPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQF  309
                G   L +A  G   K+     A + Q + +      L++  +RELA Q     ++F
Sbjct  78   QAILGMDVLCQAKSGM-GKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERF  136

Query  310  KKYIDNPKLRELLIIGGVAARDQLSVLENG-VDIVVGTPGRLDDLVSTGKLNLSQVRFLV  368
             KY+  P ++  +  GG+A +    VL+     IVVGTPGR+  L     LNL  ++  +
Sbjct  137  SKYM--PSVKVAVFFGGLAVKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFI  194

Query  369  LDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTW  428
            LDE D +L       + R   +I ++T   K  QV++ SATL S +++ +  K M  P  
Sbjct  195  LDECDKMLE---QLDMRRDVQEIFRMTPHEK--QVMMFSATL-SKEIRPVCRKFMQDPME  248

Query  429  VDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEA  488
            + +  E  +                     L + +++  D                    
Sbjct  249  IFVDDETKL-----------------TLHGLQQYYVKLKDNE------------------  273

Query  489  IKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGD  548
                K       +   + +Q +IF ++   C  L Q  ++Q          F  + +H  
Sbjct  274  ----KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ---------NFPAIAIHRG  320

Query  549  RKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
                ER    ++FK    R L+ T++  RG+DI  V    N  +P++   Y+HR+ R GR
Sbjct  321  MPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGR  380

Query  609  AERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNC  668
                GLAI+ V+ E                               N+ ++L+++++    
Sbjct  381  FGTKGLAITFVSDE-------------------------------NDAKILNDVQDRFEV  409

Query  669  TISQVEPDIKV  679
             IS++  +I +
Sbjct  410  NISELPDEIDI  420


 Score = 77.9 bits (190),  Expect = 8e-14, Method: Composition-based stats.
 Identities = 20/63 (32%), Positives = 37/63 (59%), Gaps = 0/63 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F +  + PE+ +A+ +  +  P+++Q E IP  + G DVL  A++G GKT  F +  +
Sbjct  45   SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL  104

Query  62   QIV  64
            Q +
Sbjct  105  QQL  107


>sp|Q8VDW0|DX39A_MOUSE ATP-dependent RNA helicase DDX39A OS=Mus 
musculus OX=10090 GN=Ddx39a PE=1 SV=1
Length=427

 Score = 282 bits (722),  Expect = 1e-86, Method: Composition-based stats.
 Identities = 102/446 (23%), Positives = 176/446 (39%), Gaps = 74/446 (17%)

Query  190  DTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKF  249
            D  G Y+ I       S   +D  L  E+   + +        +++  +           
Sbjct  33   DVKGSYVSIH------SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIP----------  76

Query  250  PPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQF  309
                G   L +A  G   K+     A + Q + +      L++  +RELA Q     ++F
Sbjct  77   QAILGMDVLCQAKSGM-GKTAVFVLATLQQIEPVNGQVSVLVMCHTRELAFQISKEYERF  135

Query  310  KKYIDNPKLRELLIIGGVAARDQLSVLENG-VDIVVGTPGRLDDLVSTGKLNLSQVRFLV  368
             KY+  P ++  +  GG++ +    VL+     +VVGTPGR+  LV +  LNL  V+  V
Sbjct  136  SKYM--PSVKVSVFFGGLSIKKDEDVLKKNCPHVVVGTPGRILALVRSRSLNLRNVKHFV  193

Query  369  LDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTW  428
            LDE D +L       + R   +I ++T   K  Q ++ SATL S +++ +  K M  P  
Sbjct  194  LDECDKMLE---QLDMRRDVQEIFRLTPHEK--QCMMFSATL-SKEIRPVCRKFMQDPME  247

Query  429  VDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEA  488
            V +  E  +                     L + +++  D                    
Sbjct  248  VFVDDETKL-----------------TLHGLQQYYVKLKDSE------------------  272

Query  489  IKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGD  548
                K       +   + +Q +IF ++   C  L Q  ++Q          F  + +H  
Sbjct  273  ----KNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQ---------NFPAIAIHRG  319

Query  549  RKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
                ER    ++FK    R L+ T++  RG+DI  V  V N  +P++   Y+HR+ R GR
Sbjct  320  MAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR  379

Query  609  AERMGLAISLVATEKEKVWYHVCSSR  634
                GLA++ V+ E +    +    R
Sbjct  380  FGTKGLAVTFVSDENDAKILNDVQDR  405


 Score = 78.2 bits (191),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 20/63 (32%), Positives = 37/63 (59%), Gaps = 0/63 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F +  + PE+ +A+ +  +  P+++Q E IP  + G DVL  A++G GKT  F +  +
Sbjct  44   SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL  103

Query  62   QIV  64
            Q +
Sbjct  104  QQI  106


>sp|Q6BLU9|PRP28_DEBHA Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 
767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 
GN=PRP28 PE=3 SV=2
Length=580

 Score = 287 bits (735),  Expect = 1e-86, Method: Composition-based stats.
 Identities = 91/356 (26%), Positives = 153/356 (43%), Gaps = 49/356 (14%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N P  LI+ P+RELA Q     K F    D   L  + IIGG    + +  + NGV IVV
Sbjct  236  NKPLGLILAPTRELALQITKEAKLFG---DKLNLNVVTIIGGHQYEETVHSVRNGVHIVV  292

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTS--------  396
             TPGRL D +  G +NLS   F  +DEAD ++  G+   +  + N +P            
Sbjct  293  ATPGRLIDSLERGIINLSNCYFFTMDEADKMIDMGFEKSLQSILNYLPASEKLETTIDGK  352

Query  397  --DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDR  454
              + K+   ++ +AT+ S  ++K+++  +  P ++ +       D ++            
Sbjct  353  IFNIKKRITLMFTATI-SPPIEKITKNYLMKPGYLFIGNVGEAVDNINQQF---------  402

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
                         +      +      P+   +   IL+         E++    IIF  
Sbjct  403  -------------EYFGARQSSDEILDPKKLDKLFSILRFHK-----DENRNYSIIIFAN  444

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
             K  C+ L     ++G   +          +HG +    R++ ++ F++G  + LI TDV
Sbjct  445  FKKACEELAYELSRKGFSDN--------TVIHGSKSQEARERAIDSFREGKDKILIATDV  496

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
            AARGIDI  V  V+N  +  +   Y+HRIGR GRA   G + + +     +V+  +
Sbjct  497  AARGIDIPNVSLVVNYQMTKKFDEYIHRIGRTGRAGNKGTSCTFIDDGDSEVFLDL  552


 Score = 99.4 bits (246),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 53/133 (40%), Gaps = 10/133 (8%)

Query  1    MAAFSEMGVMPEIAQ-AVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
            +  ++E  +  ++    ++ + +  PT IQ  SIPL L G D++  AETGSGKT AF +P
Sbjct  153  LRCWAESKLPAKLLNILIKNLGYDSPTPIQRASIPLALNGRDIVGIAETGSGKTLAFLLP  212

Query  60   VIQIVYE-----TLKDQQEGKKGKTTIKTGASVLNKWQMNPYDR----GSAFAIGSDGLC  110
            +   +        L + Q+       +    +   +  +         G    +    + 
Sbjct  213  LFSYILSVDSNYLLYEHQQESNFNKPLGLILAPTRELALQITKEAKLFGDKLNLNVVTII  272

Query  111  CQSREVKEWHGCR  123
               +  +  H  R
Sbjct  273  GGHQYEETVHSVR  285


>sp|Q1DZK8|DBP3_COCIM ATP-dependent RNA helicase DBP3 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DBP3 PE=3 SV=2
Length=515

 Score = 285 bits (729),  Expect = 2e-86, Method: Composition-based stats.
 Identities = 109/425 (26%), Positives = 171/425 (40%), Gaps = 63/425 (15%)

Query  216  FEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNA  275
            F   P   N    P     +                    + +++   G  +        
Sbjct  102  FSFLPESSNDLYLPLEKFSSPTPIQAVSW--PLAFAGRDLIGVAETGSGKTLAFGLPCLR  159

Query  276  QVTQTKFLPNA--PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQL  333
            +V +      +  P ALI+ P+RELA Q  + + +F   +D   +    I GG     Q 
Sbjct  160  RVLELNNSETSCKPCALIITPTRELAVQIYDQLLRFSSAVD---VGIACIYGGSPKDHQR  216

Query  334  SVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ  393
              + N   +V+ TPGRL D  +   +NLS V++LVLDEAD +L +G+   I  +   IP 
Sbjct  217  REIRN-ASVVIATPGRLKDFQADQTINLSGVKYLVLDEADRMLDKGFEQDIQDIVKGIPS  275

Query  394  VTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG--EDSVPDTVHHVVVPVNP-  450
                 ++ Q I+ +AT     V+ L+      P  V +    +      +  +V  + P 
Sbjct  276  T----QKRQTIMFTATWP-IGVRNLAASFTKNPVTVTIGDSSDIRANKRIKQMVEVLQPY  330

Query  451  -KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA  509
             K  RL E L +      + H                                     + 
Sbjct  331  EKDSRLLELLRRYQDGGKNNH-------------------------------------RI  353

Query  510  IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL  569
            ++FC  K +   +E++   +G         F    +HGD    ER ++LE FK G +  L
Sbjct  354  LVFCLYKKEAMRVERFIGSKG---------FKVAGIHGDMSQTERFRSLEAFKSGSISLL  404

Query  570  ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            + TDVAARG+DI  V  V+NVT P   ++YVHRIGR GRA   GLAI+L     + +   
Sbjct  405  VATDVAARGLDIPAVKLVLNVTFPLTIEDYVHRIGRTGRAGAEGLAITLFTERDKALSGP  464

Query  630  VCSSR  634
            + +  
Sbjct  465  LINVL  469


 Score = 101 bits (251),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 42/142 (30%), Positives = 62/142 (44%), Gaps = 15/142 (11%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +FS +         +    +  PT IQA S PL   G D++  AETGSGKT AF +P 
Sbjct  99   ITSFSFLPESSNDLY-LPLEKFSSPTPIQAVSWPLAFAGRDLIGVAETGSGKTLAFGLPC  157

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD-GLCC--------  111
            ++ V E L + +   K    I T      +  +  YD+   F+   D G+ C        
Sbjct  158  LRRVLE-LNNSETSCKPCALIIT---PTRELAVQIYDQLLRFSSAVDVGIACIYGGSPKD  213

Query  112  -QSREVKEWHGCRATKGLMKGK  132
             Q RE++      AT G +K  
Sbjct  214  HQRREIRNASVVIATPGRLKDF  235


>sp|P54824|DDX6_XENLA ATP-dependent RNA helicase ddx6 OS=Xenopus 
laevis OX=8355 GN=ddx6 PE=1 SV=2
Length=481

 Score = 284 bits (726),  Expect = 2e-86, Method: Composition-based stats.
 Identities = 97/433 (22%), Positives = 169/433 (39%), Gaps = 66/433 (15%)

Query  210  KDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKS  269
            KDL +        K       C+ +   +       E   P ++  + ++ +    + ++
Sbjct  80   KDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARA  139

Query  270  QHSGN-------AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
            ++            + +     +  +A+++ P+RELA Q      Q  K++     + + 
Sbjct  140  KNGTGKSGAYLIPLLERLDLKKDCIQAMVIVPTRELALQVSQICIQVSKHMGGA--KVMA  197

Query  323  IIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD  382
              GG   RD +  L++ V +V+ TPGR+ DL+  G   +  ++ +VLDEAD LLSQ +  
Sbjct  198  TTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHIQMIVLDEADKLLSQDFMQ  257

Query  383  FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH  442
             +  +   +P      K  Q+++ SAT     V+K     +  P  ++L  E+     V 
Sbjct  258  IMEDIIMTLP------KNRQILLYSATFP-LSVQKFMTLHLQKPYEINLM-EELTLKGVT  309

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
                 V  +                                         K         
Sbjct  310  QYYAYVTERQ----------------------------------------KVHCLNTLFS  329

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
              +++Q+IIFC +    + L +   Q G         +SC  +H   +   R +    F+
Sbjct  330  RLQINQSIIFCNSSQRVELLAKKISQLG---------YSCFYIHAKMRQEHRNRVFHDFR  380

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             G  R L+CTD+  RGIDI  V  VIN   P   + Y+HRIGR GR   +GLAI+L+  +
Sbjct  381  NGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYD  440

Query  623  KEKVWYHVCSSRG  635
                   +    G
Sbjct  441  DRFNLKSIEEQLG  453


 Score = 91.7 bits (226),  Expect = 4e-18, Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 39/61 (64%), Gaps = 0/61 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +  +  E+   + EM W  P+ IQ ESIP+ L G D+L  A+ G+GK+GA+ IP+++ 
Sbjct  97   FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER  156

Query  64   V  64
            +
Sbjct  157  L  157


>sp|Q5U216|DX39A_RAT ATP-dependent RNA helicase DDX39A OS=Rattus 
norvegicus OX=10116 GN=Ddx39a PE=2 SV=1
Length=427

 Score = 282 bits (721),  Expect = 2e-86, Method: Composition-based stats.
 Identities = 102/446 (23%), Positives = 176/446 (39%), Gaps = 74/446 (17%)

Query  190  DTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKF  249
            D  G Y+ I       S   +D  L  E+   + +        +++  +           
Sbjct  33   DVKGSYVSIH------SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIP----------  76

Query  250  PPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQF  309
                G   L +A  G   K+     A + Q + +      L++  +RELA Q     ++F
Sbjct  77   QAILGMDVLCQAKSGM-GKTAVFVLATLQQIEPINGQVSVLVMCHTRELAFQISKEYERF  135

Query  310  KKYIDNPKLRELLIIGGVAARDQLSVLENG-VDIVVGTPGRLDDLVSTGKLNLSQVRFLV  368
             KY+  P ++  +  GG++ +    VL+     +VVGTPGR+  LV +  LNL  V+  V
Sbjct  136  SKYM--PSVKVSVFFGGLSIKKDEDVLKKNCPHVVVGTPGRILALVRSRSLNLRNVKHFV  193

Query  369  LDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTW  428
            LDE D +L       + R   +I ++T   K  Q ++ SATL S +++ +  K M  P  
Sbjct  194  LDECDKMLE---QLDMRRDVQEIFRLTPHEK--QCMMFSATL-SKEIRPVCRKFMQDPME  247

Query  429  VDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEA  488
            V +  E  +                     L + +++  D                    
Sbjct  248  VFVDDETKL-----------------TLHGLQQYYVKLKDSE------------------  272

Query  489  IKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGD  548
                K       +   + +Q +IF ++   C  L Q  ++Q          F  + +H  
Sbjct  273  ----KNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQ---------NFPAIAIHRG  319

Query  549  RKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
                ER    ++FK    R L+ T++  RG+DI  V  V N  +P++   Y+HR+ R GR
Sbjct  320  MAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR  379

Query  609  AERMGLAISLVATEKEKVWYHVCSSR  634
                GLA++ V+ E +    +    R
Sbjct  380  FGTKGLAVTFVSDENDAKILNDVQDR  405


 Score = 78.2 bits (191),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 20/63 (32%), Positives = 37/63 (59%), Gaps = 0/63 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F +  + PE+ +A+ +  +  P+++Q E IP  + G DVL  A++G GKT  F +  +
Sbjct  44   SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL  103

Query  62   QIV  64
            Q +
Sbjct  104  QQI  106


>sp|Q5ASK8|SUB2_EMENI ATP-dependent RNA helicase sub2 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=sub2 PE=3 SV=2
Length=434

 Score = 282 bits (721),  Expect = 2e-86, Method: Composition-based stats.
 Identities = 99/382 (26%), Positives = 158/382 (41%), Gaps = 71/382 (19%)

Query  256  VALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDN  315
              L +A  G + K+       + Q + +P     L++  +RELA Q  N   +F KY+  
Sbjct  98   DVLCQAKSG-LGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYL--  154

Query  316  PKLRELLIIGGVAARDQLSVLENG---VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
            P ++  +  GG   +  + VL N     +I+VGTPGRL+ LV   KL+L  V+  VLDE 
Sbjct  155  PDVKTAVFYGGTPIQKDIEVLSNKDTFPNIIVGTPGRLNALVRDKKLSLRNVKAFVLDEC  214

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D +L       + R   +I + T   K  QV++ SATL S DV+ + +K M  P  V + 
Sbjct  215  DKMLD---QIDMRRDVQEIFRATPTDK--QVMMFSATL-SQDVRPICKKFMRNPLEVYVD  268

Query  433  GEDS-VPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
             +       +    + ++                                          
Sbjct  269  DDTKLTLHGLQQYYIKLSEAE---------------------------------------  289

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
             K       +   + +Q IIF ++ I  + L++   +           F  + +H  R  
Sbjct  290  -KNRKLNELLDSLEFNQVIIFVKSTIRANELDKLLRE---------CNFPSIAVHSGR--  337

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
                   + FK+ + R  + TDV  RGIDI  +   IN  LP +  +Y+HR+GR GR   
Sbjct  338  ------YKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGT  391

Query  612  MGLAISLV-ATEKEKVWYHVCS  632
             GL+IS V   E E+V   +  
Sbjct  392  KGLSISFVSTPEDEQVLKDIEK  413


 Score = 71.7 bits (174),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 32/63 (51%), Gaps = 0/63 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F +  +  E+ +A+ +  +  P+++Q   IP  +   DVL  A++G GKT  F +  +
Sbjct  59   TGFRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTL  118

Query  62   QIV  64
              +
Sbjct  119  HQL  121


>sp|A3LZT3|DBP10_PICST ATP-dependent RNA helicase DBP10 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DBP10 PE=3 SV=2
Length=931

 Score = 295 bits (755),  Expect = 3e-86, Method: Composition-based stats.
 Identities = 112/479 (23%), Positives = 188/479 (39%), Gaps = 44/479 (9%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             +  GL+  +  ++  +       ++   +       +         V +++   G    
Sbjct  101  FQSFGLSKLVLTNIAKKGYRQPTPIQRKTIPLIMANRD--------VVGMARTGSGKTAA  152

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
                   ++ +        +A+I+ PSRELA QT   +K+F K      LR +++ GG +
Sbjct  153  FTLPVIEKL-KGHSARVGIRAIILSPSRELALQTYKQVKEFSK---GSDLRAIVLTGGDS  208

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
              DQ S + +  DIV+ TPGR   L    +L+L  V ++V DEAD L  QG+++ +N + 
Sbjct  209  LEDQFSSMVSNPDIVIATPGRFLHLQVEMQLDLKTVEYIVFDEADHLFEQGFAEQLNELL  268

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV--V  446
              +P       + Q ++ SATL    V   ++  +  P  V L  +  + D +       
Sbjct  269  AVLP------PQRQSLLFSATLPRSLV-DFAKAGLSNPVLVRLDADSKISDQLQMAFFTT  321

Query  447  PVNPKTDRLWERLGK------------SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG  494
              N +   L   L +              +R  D    D         E  S+     K 
Sbjct  322  KKNEREANLLYVLQEVIKMPLGTAEQIKKLRLMDKRVNDEAEEEELENESGSKRKYKFKK  381

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
            E    A         I+F  TK   + +       G         +    ++G    H R
Sbjct  382  ERLPSANVLPSPHSTIVFVPTKHHVEYITTLLRDAG---------YLVSYIYGTLDQHAR  432

Query  555  KQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGL  614
            K  L +F+ G    L+ TDVAARGIDI  +  V+N TLP   + ++HR+GR  RA   G 
Sbjct  433  KNQLYQFRLGMTTVLVVTDVAARGIDIPVLANVVNYTLPGSSKIFIHRVGRTARAGNKGW  492

Query  615  AISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQV  673
            A S+V  ++      +    GK    T ++E         + Q  + +E  +  T   V
Sbjct  493  AYSIVNEKELPYLLDLELFLGKKILLTAMQEQK--CQLLKDKQGDNYVEPKVQYTDRLV  549


 Score = 104 bits (259),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 32/105 (30%), Positives = 51/105 (49%), Gaps = 7/105 (7%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F   G+   +   + +  +  PT IQ ++IPLI+   DV+  A TGSGKT AF++PVI+
Sbjct  100  SFQSFGLSKLVLTNIAKKGYRQPTPIQRKTIPLIMANRDVVGMARTGSGKTAAFTLPVIE  159

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
             +          + G   I    S   +  +  Y +   F+ GSD
Sbjct  160  KLKGHS-----ARVGIRAI--ILSPSRELALQTYKQVKEFSKGSD  197


>sp|Q4JG17|VASAL_PENVA Probable ATP-dependent RNA helicase vasa-like 
OS=Penaeus vannamei OX=6689 GN=vasa PE=2 SV=2
Length=703

 Score = 290 bits (741),  Expect = 3e-86, Method: Composition-based stats.
 Identities = 114/528 (22%), Positives = 191/528 (36%), Gaps = 107/528 (20%)

Query  137  VSCHDQGLCRVGWSTMQASLDLGTDK--FGFGFGGTGKKSHNKQFD------NYGEEFTM  188
              C ++G       +       G +K  F  G  G   +      +           +  
Sbjct  167  FKCGEEGHM-----SRDCPSGGGRNKGCFKCGQEGHNARDCPNPGEGSEEKKPRAPLYIP  221

Query  189  HDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQAL-----------FPACVLKNAE  237
             D        ++  +     G + G  F+   ++                F +  L+   
Sbjct  222  ADV-------NEDELF--VMGIEAGSNFDAYANVPANVSGAEPIQPAAESFQSMNLRPLL  272

Query  238  LKFNFGEEEFKFPPKDGFVALSKAPDGYIV---KSQHSGNAQVTQTKFL-----------  283
            L+ N  +  +  P       +    +G  +       SG         L           
Sbjct  273  LE-NIVKAGYGCPTPVQKYTIPNVMNGRDIMACAQTGSGKTAAFLLPMLHYILDNNCPSN  331

Query  284  ----PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
                P  P  L++ P+RELA Q +   ++F     +   +  +  GG A   QL  + +G
Sbjct  332  AFEEPAQPTGLVICPTRELAIQIMREARKFSH---SSVAKCCVAYGGAAGFHQLKTIHSG  388

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
              I+V TPGRL D +  GK+  S +++LVLDEAD +L  G+   I  + N   +  +   
Sbjct  389  CHILVATPGRLLDFLEKGKIVFSSLKYLVLDEADRMLDMGFLSSIKTVINH--KTMTPTA  446

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV--VPVNPKTDRLWE  457
                ++ SAT    ++++L+   ++   +V +    +    V   V  VP   K  +L E
Sbjct  447  ERITLMFSATFP-HEIQELASAFLNNYLFVVVGTVGAANTDVKQEVLCVPKFEKKAKLVE  505

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
               +  I  DD                                      ++ ++F   K 
Sbjct  506  MCEEILISADD--------------------------------------EKILVFVEQKR  527

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
              D +  Y  ++         +F    +HGDR   +R+Q L  F+ G    L+ T V AR
Sbjct  528  VADFVGTYLCEK---------KFRATTMHGDRYQAQREQALSEFRTGVHNILVATAVTAR  578

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            G+DI G+  V+N  LP +   YVHRIGR GR    GL+IS    E + 
Sbjct  579  GLDIKGIGVVVNYDLPKDIDEYVHRIGRTGRLGNRGLSISFYDDETDA  626


 Score = 117 bits (293),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 0/109 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F  M + P + + + +  +  PT +Q  +IP ++ G D++  A+TGSGKT AF +P++ 
Sbjct  262  SFQSMNLRPLLLENIVKAGYGCPTPVQKYTIPNVMNGRDIMACAQTGSGKTAAFLLPMLH  321

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
             + +        ++             +  +        F+  S   CC
Sbjct  322  YILDNNCPSNAFEEPAQPTGLVICPTRELAIQIMREARKFSHSSVAKCC  370


>sp|Q759L6|SUB2_EREGS ATP-dependent RNA helicase SUB2 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=SUB2 PE=3 SV=1
Length=438

 Score = 282 bits (721),  Expect = 3e-86, Method: Composition-based stats.
 Identities = 96/409 (23%), Positives = 164/409 (40%), Gaps = 62/409 (15%)

Query  250  PPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQF  309
                G   L +A  G + K+     + + Q   +P     +++  +RELA Q  N   +F
Sbjct  87   QSIHGTDVLCQAKSG-LGKTAVFVLSTLQQLDPVPGEVSVVVLCNARELAYQIRNEYLRF  145

Query  310  KKYIDNPKLRELLIIGGVAARDQLSVLENG---VDIVVGTPGRLDDLVSTGKLNLSQVRF  366
             KY+  P ++  +  GG   R  + +L+N      IVV TPGRL  LV    ++LS V+ 
Sbjct  146  SKYM--PDVKTAVFYGGTDTRKDIELLKNKDTAPHIVVATPGRLKALVRDNNIDLSHVKN  203

Query  367  LVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFP  426
             V+DE D +L       + R    I + T   K  QV++ SATL S +++ +  + +  P
Sbjct  204  FVIDECDKVLE---ELDMRRDVQDIFRATPRDK--QVMMFSATL-SQEIRPICRRFLQNP  257

Query  427  TWVDLKGEDS-VPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW  485
              + +  E       +    + +  +                                  
Sbjct  258  LEIFVDDEAKLTLHGLQQYYIRLEERE---------------------------------  284

Query  486  SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL  545
                   K     + + + + +Q IIF ++ +  + L +               F  + +
Sbjct  285  -------KNRKLAQLLDDLEFNQVIIFVKSTLRANELTKLL---------NASNFPAITV  328

Query  546  HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR  605
            HG  +  ER    + FK+ + R  + TDV  RGIDI  +   IN  +P E   Y+HR+GR
Sbjct  329  HGHMRQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPSEADQYLHRVGR  388

Query  606  VGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYN  654
             GR    GLAISLV+++ ++        R         +E    + + N
Sbjct  389  AGRFGTKGLAISLVSSKDDEEVLAKIQERFDVKITEFPEEGVDPSTYLN  437


 Score = 75.6 bits (184),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 37/63 (59%), Gaps = 0/63 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F +  + PE+++A+ +  +  P+++Q  +IP  + G DVL  A++G GKT  F +  +
Sbjct  54   TGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTL  113

Query  62   QIV  64
            Q +
Sbjct  114  QQL  116


>sp|A5E0U9|DBP8_LODEL ATP-dependent RNA helicase DBP8 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP8 PE=3 SV=1
Length=444

 Score = 282 bits (721),  Expect = 3e-86, Method: Composition-based stats.
 Identities = 102/478 (21%), Positives = 181/478 (38%), Gaps = 63/478 (13%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             K+LG+A  +   ++   +     +++A +         +       +  +K   G  + 
Sbjct  5    FKELGVAKWLSESLEAMKIHSPTSIQSACIP--------EILKGRDCIGGAKTGSGKTIA  56

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
                    +TQ    P     LI+ P+RELA Q     +QF        ++  +++GG  
Sbjct  57   FAAL---MLTQWSQDPFGIFGLILTPTRELALQI---AEQFAALGALMNIKVCVVVGGED  110

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLV----STGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
               Q   L+     V+ TPGRL D +          L ++++LVLDEAD LLS  +   +
Sbjct  111  FVKQTLELQKKPHFVIATPGRLADHILNSGEETVSGLRRIKYLVLDEADRLLSNSFGSDL  170

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
             R    +P      ++ Q ++ +AT+    VK L +K          + E  +P  +H  
Sbjct  171  QRCFTILP----PSEKRQTLLFTATVTDA-VKALKDKP---------RAEGKLPVFLHQ-  215

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
             V        + + L   ++       +         P                    ++
Sbjct  216  -VDAGVDQIAIPKTLSTMYVFVPSYVKEAYLTSILKLP--------------------KY  254

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
            +   A++F    +  + L +   +          +F    LH +    ER  +L RFK G
Sbjct  255  EESTAVVFVNRTMTAEVLRRMLRKL---------EFKVASLHSEMPQTERTNSLHRFKAG  305

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
              R LI TDVA+RG+DI  V  V+N  +P +  +++HR+GR  RA R G AIS++  +  
Sbjct  306  AARILIATDVASRGLDIPTVELVVNFDIPADPDDFIHRVGRTARAGRKGDAISIIGEKDI  365

Query  625  KVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVD  682
            +    +     K        +D        +    ++ E  L+          KV   
Sbjct  366  ERIESIEERINKKMELLEGVDDDKVINDSLQKATTAKREAMLDMDKESFGERRKVNKK  423


 Score = 95.2 bits (235),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 37/156 (24%), Positives = 64/156 (41%), Gaps = 20/156 (13%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F E+GV   +++++E M    PT IQ+  IP IL G D +  A+TGSGKT AF+  ++ 
Sbjct  4    SFKELGVAKWLSESLEAMKIHSPTSIQSACIPEILKGRDCIGGAKTGSGKTIAFAALMLT  63

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA----------IGSDGLCCQ  112
               +                   +   +  +   ++ +A            +G +    Q
Sbjct  64   QWSQ---------DPFGIFGLILTPTRELALQIAEQFAALGALMNIKVCVVVGGEDFVKQ  114

Query  113  SREV-KEWHGCRATKGLMKGKHYYEVSCHDQGLCRV  147
            + E+ K+ H   AT G +             GL R+
Sbjct  115  TLELQKKPHFVIATPGRLADHILNSGEETVSGLRRI  150


>sp|A5DU73|PRP28_LODEL Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Lodderomyces elongisporus (strain ATCC 11503 
/ CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 
GN=PRP28 PE=3 SV=1
Length=597

 Score = 287 bits (733),  Expect = 4e-86, Method: Composition-based stats.
 Identities = 102/454 (22%), Positives = 184/454 (41%), Gaps = 76/454 (17%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
            +++  + GL  +I   +K+        ++ A +  +              V +++   G 
Sbjct  184  TRSWDESGLDPKILASLKSFGFRQPTPVQRASIPISL--------ELRDVVGVAETGSGK  235

Query  266  IVKSQHSGNAQVTQT-------KFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKL  318
             +         +++        + + N P AL++ P+RELA Q     ++F K       
Sbjct  236  TLAFLLPLLHYLSRVDGNYLNYEKVRNEPLALVLAPTRELALQITQEAEKFGK---QLGF  292

Query  319  RELLIIGGVAARDQLSVLEN-----GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEAD  373
              L IIGG   ++ +  ++N     GV IVVGTPGRL D V    LN S+  +LV+DEAD
Sbjct  293  NVLSIIGGRQYQETMDQIDNMIVGRGVHIVVGTPGRLLDSVERKILNFSKCYYLVMDEAD  352

Query  374  GLLSQGYSDFINRMHNQIPQVTS----------DGKRLQVIVCSATLHSFDVKKLSEKIM  423
             ++  G+   +N++ N +P+                +   ++ +AT+ S  ++K+++  +
Sbjct  353  RMIDMGFEKDLNKLINLLPKNEKLSTTIDGKLFHLTKRLTMMYTATI-SPPIEKITKSYL  411

Query  424  HFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPE  483
              P ++ + G     D +                                +         
Sbjct  412  IDPAYIYIGGAGEALDNIDQHF----------------------------DYLSTYAESA  443

Query  484  MWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCV  543
              S+ IK+++G       + ++    IIF   K  CD L     Q         +    V
Sbjct  444  RLSKLIKVVQGHK-----RRNRNALVIIFANFKHVCDVLSLELEQ---------NNLLNV  489

Query  544  CLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI  603
             +HG +    R++ LE F+      L+ TDVAARGID+  V  VIN  +  +   Y+HRI
Sbjct  490  VIHGSKSQEAREEALEDFRTHQAPILVATDVAARGIDVPNVSLVINYQMSKKFDEYIHRI  549

Query  604  GRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
            GR GRA  +G + + +     + +  +      G
Sbjct  550  GRTGRAGNLGESYTFLDDADAETFMPLKKFLKSG  583


 Score = 103 bits (256),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 1/104 (1%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             ++ E G+ P+I  +++   +  PT +Q  SIP+ L   DV+  AETGSGKT AF +P++
Sbjct  185  RSWDESGLDPKILASLKSFGFRQPTPVQRASIPISLELRDVVGVAETGSGKTLAFLLPLL  244

Query  62   QIVYETLKD-QQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
              +     +     K     +    +   +  +        F  
Sbjct  245  HYLSRVDGNYLNYEKVRNEPLALVLAPTRELALQITQEAEKFGK  288


>sp|P54823|DDX6_MOUSE Probable ATP-dependent RNA helicase DDX6 
OS=Mus musculus OX=10090 GN=Ddx6 PE=1 SV=1
Length=483

 Score = 283 bits (724),  Expect = 4e-86, Method: Composition-based stats.
 Identities = 98/433 (23%), Positives = 169/433 (39%), Gaps = 66/433 (15%)

Query  210  KDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKS  269
            KDL +        K       C+ +   +       E   P ++  + ++ +    + ++
Sbjct  81   KDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARA  140

Query  270  QHSGN-------AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
            ++            + +     +  +A+++ P+RELA Q      Q  K++     + + 
Sbjct  141  KNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGA--KVMA  198

Query  323  IIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD  382
              GG   RD +  L++ V +V+ TPGR+ DL+  G   +  V+ +VLDEAD LLSQ +  
Sbjct  199  TTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQ  258

Query  383  FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH  442
             +  +   +P      K  Q+++ SAT     V+K     +  P  ++L  E+     V 
Sbjct  259  IMEDIILTLP------KNRQILLYSATFP-LSVQKFMNSHLQKPYEINLM-EELTLKGVT  310

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
                 V  +                                         K         
Sbjct  311  QYYAYVTERQ----------------------------------------KVHCLNTLFS  330

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
              +++Q+IIFC +    + L +   Q G         +SC  +H   +   R +    F+
Sbjct  331  RLQINQSIIFCNSSQRVELLAKKISQLG---------YSCFYIHAKMRQEHRNRVFHDFR  381

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             G  R L+CTD+  RGIDI  V  VIN   P   + Y+HRIGR GR   +GLAI+L+  +
Sbjct  382  NGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYD  441

Query  623  KEKVWYHVCSSRG  635
                   +    G
Sbjct  442  DRFNLKSIEEQLG  454


 Score = 93.3 bits (230),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 33/128 (26%), Positives = 57/128 (45%), Gaps = 3/128 (2%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +  +  E+   + EM W  P+ IQ ESIP+ L G D+L  A+ G+GK+GA+ IP+++ 
Sbjct  98   FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER  157

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEW---H  120
            +     + Q      T            Q++ +  G+     + G   +   ++     H
Sbjct  158  LDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVH  217

Query  121  GCRATKGL  128
               AT G 
Sbjct  218  VVIATPGR  225


>sp|Q6FQQ6|IF4A_CANGA ATP-dependent RNA helicase eIF4A OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=TIF1 PE=3 SV=1
Length=396

 Score = 280 bits (716),  Expect = 5e-86, Method: Composition-based stats.
 Identities = 106/426 (25%), Positives = 178/426 (42%), Gaps = 72/426 (17%)

Query  228  FPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN------AQVTQ  279
            F    L    L+  F +G  +     +   + + +  D        +G       A + +
Sbjct  25   FDDMNLNEKLLRGVFGYGFNKPSAIQQRAIMPIIEGNDVLAQAQSGTGKTGTFSIAALQR  84

Query  280  TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
                  AP+AL++ P+RELA Q    +     ++D   ++    IGG +  +    L + 
Sbjct  85   IDPAIKAPQALMLAPTRELALQIQKVVMALGFHMD---IKVHACIGGTSFVEDAEGLRD-  140

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
              IVVGTPGR+ D +   K  +  ++  +LDEAD +LS G+ + I ++   +P  T    
Sbjct  141  AQIVVGTPGRVFDNIQRRKFKVDNIKMFILDEADEMLSTGFKEQIYQIFTMLPPTT----  196

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              QV++ SAT+   DV +++ K M  P  + +K ++   + +    V V  +        
Sbjct  197  --QVVLLSATMP-RDVLEVTAKFMQNPVRILVKKDELTLEGIKQFYVNVEEEQ-------  246

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
                                             K +          + QA+IFC T+   
Sbjct  247  --------------------------------FKYDCLTDLYDSISVTQAVIFCNTRRKV  274

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            + L Q               F+   ++ D    ER   ++ F+ G  R LI TD+ ARGI
Sbjct  275  EELTQRLT---------ADNFTVSSIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGI  325

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCY  639
            D+  V  VIN  LP  K+NY+HRIGR GR  R G+AI+ +  E  +    +     +  Y
Sbjct  326  DVQQVSLVINYDLPTNKENYIHRIGRGGRFGRKGVAINFIVNEDVQALREL-----EQFY  380

Query  640  NTRLKE  645
            +T+++E
Sbjct  381  STQIEE  386


 Score = 90.2 bits (222),  Expect = 7e-18, Method: Composition-based stats.
 Identities = 30/126 (24%), Positives = 51/126 (40%), Gaps = 1/126 (1%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +M +  ++ + V    +  P+ IQ  +I  I+ G DVL  A++G+GKTG FSI  +Q 
Sbjct  25   FDDMNLNEKLLRGVFGYGFNKPSAIQQRAIMPIIEGNDVLAQAQSGTGKTGTFSIAALQR  84

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA-IGSDGLCCQSREVKEWHGC  122
            +   +K  Q      T             +  +      A IG       +  +++    
Sbjct  85   IDPAIKAPQALMLAPTRELALQIQKVVMALGFHMDIKVHACIGGTSFVEDAEGLRDAQIV  144

Query  123  RATKGL  128
              T G 
Sbjct  145  VGTPGR  150


>sp|Q59PR3|DBP8_CANAL ATP-dependent RNA helicase DBP8 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP8 
PE=3 SV=1
Length=440

 Score = 282 bits (720),  Expect = 5e-86, Method: Composition-based stats.
 Identities = 112/500 (22%), Positives = 184/500 (37%), Gaps = 95/500 (19%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
              DLG+A  +   +    ++    +++A +               G   +  A  G   K
Sbjct  3    FNDLGVAKWLSESLDAMKIYTPTAIQSACIPAIL----------KGHDCIGGAKTG-SGK  51

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
            +       +TQ    P     LI+ P+RELA Q     +QF     N  ++  +++GG  
Sbjct  52   TIAFAAPMLTQWSEDPFGIFGLILTPTRELALQI---AEQFAALGANMNIKVAVVVGGED  108

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLV----STGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
               Q   L+     V+ TPGRL D +          L +V++LVLDEAD LLS  +   +
Sbjct  109  FVQQTLALQRKPHFVIATPGRLADHILNSGEETISGLRRVKYLVLDEADRLLSNSFGSDL  168

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEK---------IMHFPTWVDLKGED  435
             R  + +P       + Q ++ +AT+    V+ L EK          MH    V+   + 
Sbjct  169  QRCFDVLP----TSDKRQTLLFTATITDA-VRALKEKPPTPGKPPVFMH---EVETVDKV  220

Query  436  SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGE  495
            ++P T+    V V       +                                       
Sbjct  221  AIPSTLQISYVFVPSYVKEAY--------------------------------------L  242

Query  496  YAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERK  555
             ++  +++ K   A+IF       + L +   +           F    LH +    ER 
Sbjct  243  NSILHLEQFKDSTAVIFVNRTTTAEVLRRMLRKL---------DFRVASLHSEMPQSERT  293

Query  556  QNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLA  615
             +L RFK G  R LI TDVA+RG+DI  V  VIN  +P +  +++HR+GR  RA R G A
Sbjct  294  NSLHRFKAGAARILIATDVASRGLDIPTVELVINFDIPADPDDFIHRVGRTARAGRKGDA  353

Query  616  ISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEP  675
            +S++  +       +     K         D               I+E L+ T      
Sbjct  354  VSIIGEKDIDRIQSIEERINKKMELLEDVNDDNV------------IKESLSATSVAKRE  401

Query  676  DIKVPVDE-FDGKVTYGQKR  694
             +     E F  +    +K+
Sbjct  402  SLMEMDKENFGERKKINRKK  421


 Score = 97.9 bits (242),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 62/156 (40%), Gaps = 20/156 (13%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F+++GV   ++++++ M    PT IQ+  IP IL G D +  A+TGSGKT AF+ P++ 
Sbjct  2    SFNDLGVAKWLSESLDAMKIYTPTAIQSACIPAILKGHDCIGGAKTGSGKTIAFAAPMLT  61

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG----------SDGLCCQ  112
               E                   +   +  +   ++ +A               +    Q
Sbjct  62   QWSE---------DPFGIFGLILTPTRELALQIAEQFAALGANMNIKVAVVVGGEDFVQQ  112

Query  113  SREVKEW-HGCRATKGLMKGKHYYEVSCHDQGLCRV  147
            +  ++   H   AT G +             GL RV
Sbjct  113  TLALQRKPHFVIATPGRLADHILNSGEETISGLRRV  148


>sp|Q91372|DDX4_XENLA Probable ATP-dependent RNA helicase DDX4 
OS=Xenopus laevis OX=8355 GN=ddx4 PE=2 SV=1
Length=700

 Score = 289 bits (739),  Expect = 5e-86, Method: Composition-based stats.
 Identities = 99/389 (25%), Positives = 170/389 (44%), Gaps = 60/389 (15%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSG-----NAQVTQTKFLP-NAPKALIVEPSRELAE  300
                     +A ++   G              N  +T +++L    P+A+I+ P+REL  
Sbjct  306  PIIMAGRDLMACAQTGSGKTAAFLLPILSYMMNEGITASQYLQLQEPEAIIIAPTRELIN  365

Query  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN  360
            Q   + ++F        +R +++ GG+     +  +E G +I+  TPGRL D+VS  K+ 
Sbjct  366  QIYLDARKFS---YGTCVRPVVVYGGIQPVHAMRDVEKGCNILCATPGRLLDIVSKEKIG  422

Query  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
            LS++R+LVLDEAD +L  G++  I ++  +        ++ Q ++ SAT    ++++L+ 
Sbjct  423  LSKLRYLVLDEADRMLDMGFAPEIEKLMTK--PGMPTKEKRQTLMFSATYP-EEIRRLAS  479

Query  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480
              +                   H+ V V                              ++
Sbjct  480  NYLKS----------------EHLFVVVG-----------------------LVGGACSD  500

Query  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540
              +   E  +  K E  +  +K  + ++ +IF  TK   D +  Y  Q+         +F
Sbjct  501  VAQTVLEMRENGKMEKLLEILKSSEKERTMIFVNTKKKADFIAGYLCQE---------KF  551

Query  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600
            S   +HGDR+ ++R+  L  F+ G    ++CT VAARG+DI  V +VIN  +P E   YV
Sbjct  552  SSTSIHGDREQYQRESALWDFRTGKCTVIVCTAVAARGLDIENVQHVINYDVPKEVDEYV  611

Query  601  HRIGRVGRAERMGLAISLVATEKEKVWYH  629
            HRIGR GR    G A S    + + V   
Sbjct  612  HRIGRTGRCGNTGKATSFFNVQDDHVIAR  640


 Score = 102 bits (253),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 24/106 (23%), Positives = 47/106 (44%), Gaps = 0/106 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E  +   + + V    ++  T +Q  SIP+I+ G D++  A+TGSGKT AF +P+
Sbjct  273  ILTFEEANLCETLRRNVARAGYVKLTPVQKHSIPIIMAGRDLMACAQTGSGKTAAFLLPI  332

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            +  +        +  + +       +   +     Y     F+ G+
Sbjct  333  LSYMMNEGITASQYLQLQEPEAIIIAPTRELINQIYLDARKFSYGT  378


>sp|P0C2N8|DRS1_NEUCR ATP-dependent RNA helicase drs1 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=drh-11 PE=3 SV=1
Length=829

 Score = 292 bits (747),  Expect = 5e-86, Method: Composition-based stats.
 Identities = 115/518 (22%), Positives = 187/518 (36%), Gaps = 79/518 (15%)

Query  159  GTDKFGFGFGGTGKKSHNKQFDNYGEEFTM------HDTIGCYLDIDKGHVKFSKNGKDL  212
            G D+   G  G  K     + D   ++          D      +      + +K  +  
Sbjct  219  GEDEDSEGEDGEKKGEDEDEGDASDDDSVATAVEHPDDVQSSDDEEGIDEEEEAKMKEFF  278

Query  213  GLAFEIPPHMKN-QALFPACVLKNAELKFNFGEEEFKFPPKDGFVAL------------S  259
                E  P  K   + F    L    L+       F  P       +            +
Sbjct  279  APEEENQPKKKGEMSSFQEMSLSRPILR-GLTSVGFTKPTPIQAKTIPISLMGKDVVGGA  337

Query  260  KAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLR  319
                G           ++          + +I+ P+RELA Q      +   + D   ++
Sbjct  338  VTGSGKTAAFVVPILERLLYRPKKVPTTRVVILTPTRELAIQCHAVAVKLASHTD---IK  394

Query  320  ELLIIGGVAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQ  378
              L +GG++ + Q + L    D+V+ TPGR +D + ++    +  +  LVLDEAD +L  
Sbjct  395  FCLAVGGLSLKVQEAELRLRPDVVIATPGRFIDHMRNSASFAVDTIEILVLDEADRMLED  454

Query  379  GYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVP  438
            G++D +N +   +P      K  Q ++ SAT+ S  V +L    ++ P  +    +    
Sbjct  455  GFADELNEILTTLP------KSRQTMLFSATMTS-SVDRLIRAGLNKPVRIMADSQKKTA  507

Query  439  DTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAV  498
             T+    V + P  +   E                                      Y +
Sbjct  508  GTLVQEFVRLRPGRESKREG-------------------------------------YLL  530

Query  499  RAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNL  558
               K    ++ IIF R K     +   F   G          SC  LHG     +R Q++
Sbjct  531  HICKTIYTERVIIFFRQKKIAHKMRIIFGLFG---------LSCAELHGSMNQAQRIQSV  581

Query  559  ERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            E F+ G V FL+ TD+A+RG+DI GV  VIN   P   + YVHR+GR  RA R G AI+L
Sbjct  582  EDFRDGKVNFLLATDLASRGLDIKGVDTVINYEAPQTPEIYVHRVGRTARAGRSGTAITL  641

Query  619  VATEKEKVWYHVCSSRGKG--CYNTRLKEDGGCTIWYN  654
             A    KV      +        ++R+ +      W  
Sbjct  642  AAEPDRKVVKAAVKAGKSQGAKISSRIIDPADADKWQA  679


 Score = 112 bits (279),  Expect = 4e-24, Method: Composition-based stats.
 Identities = 32/107 (30%), Positives = 53/107 (50%), Gaps = 6/107 (6%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M++F EM +   I + +  + +  PT IQA++IP+ L G DV+  A TGSGKT AF +P+
Sbjct  292  MSSFQEMSLSRPILRGLTSVGFTKPTPIQAKTIPISLMGKDVVGGAVTGSGKTAAFVVPI  351

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            ++ +    K      K  TT     +   +  +  +      A  +D
Sbjct  352  LERLLYRPK------KVPTTRVVILTPTRELAIQCHAVAVKLASHTD  392


>sp|A1CFV3|DBP5_ASPCL ATP-dependent RNA helicase dbp5 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp5 PE=3 SV=1
Length=487

 Score = 283 bits (723),  Expect = 6e-86, Method: Composition-based stats.
 Identities = 108/495 (22%), Positives = 198/495 (40%), Gaps = 93/495 (19%)

Query  199  DKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVAL  258
                +   KN +DLGL   I   +          ++   L    G            V  
Sbjct  69   PNNPLYSVKNFEDLGLDPRILKGLSAMNFRKPSKIQERALPLLLGNPP------KNLVGQ  122

Query  259  SKAPDGYIVKSQHSGNAQVTQ-TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPK  317
            S++  G       +  ++V   T+ +   P+ALI+ P+RELA Q +  +    +++D   
Sbjct  123  SQSGTGKTAAFVLNALSRVDLSTEQMQKTPQALILAPTRELARQIVGVVSVMGQFLDG--  180

Query  318  LRELLIIGGVAARDQLSVLEN-GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL  376
                LIIG     D  +  +     I VGTPG + D++    +  ++++ LVLDEAD +L
Sbjct  181  ----LIIGTAVPADINNRPKRLECSIAVGTPGTVMDMIKRRIMVPNKLKVLVLDEADNML  236

Query  377  SQ-GYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED  435
             Q G  D   R+   +P      + +QV++ SAT     V   + K       + L+ E+
Sbjct  237  DQQGLGDQCIRVKALLP------RDIQVVLFSATFPDH-VHAYAAKFAPNANELTLQHEE  289

Query  436  SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGE  495
               + +  + +  + + D+    +    + T                             
Sbjct  290  LTVEGIKQLYLDCSDEEDKYKTLVQLYGLLT-----------------------------  320

Query  496  YAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERK  555
                      +  +IIF +T+     +E+  + +G          +   L G     +R 
Sbjct  321  ----------VGSSIIFVQTRTSASEIEKRMVAEG---------HTVASLTGGIDVTKRD  361

Query  556  QNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD-----------EKQNYVHRIG  604
            + +++F+ G+ + LI T+V ARGID+  V  VIN  +P+           + Q Y+HRIG
Sbjct  362  EIIDKFRSGEAKVLITTNVLARGIDVSTVSMVINYDIPELHRPGVPERQADFQTYLHRIG  421

Query  605  RVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEE  664
            R GR  R+G++IS V+  +E   + + +   +  +NT ++       W        E+E+
Sbjct  422  RTGRFGRVGVSISFVSNREE---WDMLNQIQR-YFNTEIQRV-DTKDW-------DEVED  469

Query  665  HLNCTISQVEPDIKV  679
             +  TI     + + 
Sbjct  470  IIKKTIKNTRANAQF  484


 Score = 86.3 bits (212),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 52/116 (45%), Gaps = 7/116 (6%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            +  F ++G+ P I + +  M++  P+ IQ  ++PL+LG    +++  +++G+GKT AF +
Sbjct  76   VKNFEDLGLDPRILKGLSAMNFRKPSKIQERALPLLLGNPPKNLVGQSQSGTGKTAAFVL  135

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSR  114
              +  V  + +  Q     KT      +   +         S      DGL   + 
Sbjct  136  NALSRVDLSTEQMQ-----KTPQALILAPTRELARQIVGVVSVMGQFLDGLIIGTA  186


>sp|Q6FNA2|DBP10_CANGA ATP-dependent RNA helicase DBP10 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP10 PE=3 SV=1
Length=969

 Score = 295 bits (754),  Expect = 6e-86, Method: Composition-based stats.
 Identities = 100/449 (22%), Positives = 177/449 (39%), Gaps = 40/449 (9%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
                GL+  I  ++  +       ++   +                 V +++   G    
Sbjct  117  FASFGLSKLILVNISKRGFRQPTPIQRKTIPLIL--------QNRDIVGMARTGSGKTAA  168

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
                   ++ +T       +A+I+ PSRELA QT +  K+F +      LR +L+ GG +
Sbjct  169  FVLPMIEKL-KTHSSKIGARAIILSPSRELAMQTHSVFKEFSR---GTHLRSVLLTGGDS  224

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
              DQ  ++    D+++ TPGR   L     L+L  V + V DEAD L   G+ + +N + 
Sbjct  225  LEDQFGMMMTNPDVIIATPGRFLHLKVEMNLDLKSVEYAVFDEADRLFEMGFQEQLNELL  284

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
              +P         Q ++ SATL +  V   ++  +  P  V L  E  + D +  + +  
Sbjct  285  AALPSS------RQTLLFSATLPTSLV-DFAKAGLVNPVLVRLDAESKISDNLEMLFLST  337

Query  449  NPKTDR-----LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSE-------AIKILKGEY  496
                       + + + K  + T +   + N     +S E   E         K    + 
Sbjct  338  KNDEREANLLYILQEVIKLPLATPEQIKQLNDNKADDSDESAEEDEDKKRRKRKSFNRKA  397

Query  497  AVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQ  556
              +A +       ++F  T+   + L       G         +    ++G    H RK 
Sbjct  398  MPKANELPSEKATVVFVPTRHHVEYLSNLLKDCG---------YLVSYIYGALDQHARKS  448

Query  557  NLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAI  616
             L  F+ G    L+ TDVAARG+DI  +  V+N +LP   + ++HR+GR  RA   G A 
Sbjct  449  QLYNFRIGLTSILVVTDVAARGVDIPMLANVVNYSLPASSKIFIHRVGRTARAGNRGWAY  508

Query  617  SLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            S+V+  +      +    G+    T + E
Sbjct  509  SIVSENELPYLLDLELFLGRKILLTPMYE  537


 Score = 105 bits (262),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 31/105 (30%), Positives = 49/105 (47%), Gaps = 7/105 (7%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F+  G+   I   + +  +  PT IQ ++IPLIL   D++  A TGSGKT AF +P+I+
Sbjct  116  SFASFGLSKLILVNISKRGFRQPTPIQRKTIPLILQNRDIVGMARTGSGKTAAFVLPMIE  175

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
             +          K G   I    S   +  M  +     F+ G+ 
Sbjct  176  KLKTHS-----SKIGARAI--ILSPSRELAMQTHSVFKEFSRGTH  213


>sp|A5DLR3|DBP10_PICGU ATP-dependent RNA helicase DBP10 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP10 PE=3 
SV=2
Length=914

 Score = 293 bits (751),  Expect = 7e-86, Method: Composition-based stats.
 Identities = 103/448 (23%), Positives = 171/448 (38%), Gaps = 37/448 (8%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
                GL+  +  ++  +       ++   +                 V +++   G    
Sbjct  101  FASFGLSKFLLKNIAKKGFKQPTPIQRKTIPLVM--------ESRDVVGMARTGSGKTAA  152

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
                   ++          +A+I+ PSRELA QT   +K+F K      LR +++IGG +
Sbjct  153  FVLPVVEKLKSHSPKV-GVRAVILSPSRELALQTFKQVKEFTK---GTDLRSIVLIGGDS  208

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
              DQ S +    DI+V TPGR   L     L+L  V ++V DEAD L   G+++ +N + 
Sbjct  209  LEDQFSSMMTNPDILVATPGRFLHLKVEMNLDLKTVEYIVFDEADRLFEMGFAEQLNELL  268

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
              +P         Q ++ SATL    V   ++  +  P  V L  E  + D +       
Sbjct  269  VALP------PSRQSLLFSATLPRSLV-DFAKAGLSNPVLVRLDAETKISDQLQMAFFTT  321

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM--  506
                         S +    +  +D  +      E   +     + +   +  K  K   
Sbjct  322  KRTERDANLLYILSEVIKMPLATQDQIKKLKELEEGADDDDSDEEKKPKKKKRKLEKPAP  381

Query  507  -------DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLE  559
                      I+F  TK   + +       G              ++G    H RKQ L 
Sbjct  382  ANRLPSEHSTIVFVPTKHHVEYVTTLLRDAGHL---------VSYIYGTLDQHARKQQLY  432

Query  560  RFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +F+      L+ TDVAARGIDI  +  V+N TLP   + ++HR+GR  RA   G A S+V
Sbjct  433  QFRAAYTNILVVTDVAARGIDIPVLANVVNYTLPGSSKIFIHRVGRTARAGNKGWAYSIV  492

Query  620  ATEKEKVWYHVCSSRGKGCYNTRLKEDG  647
              ++      +    GK    T++ E  
Sbjct  493  NEKELPYLLDLELFLGKKVLLTQMHEKK  520


 Score = 106 bits (265),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 26/105 (25%), Positives = 48/105 (46%), Gaps = 7/105 (7%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F+  G+   + + + +  +  PT IQ ++IPL++   DV+  A TGSGKT AF +PV++
Sbjct  100  SFASFGLSKFLLKNIAKKGFKQPTPIQRKTIPLVMESRDVVGMARTGSGKTAAFVLPVVE  159

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
             +                     S   +  +  + +   F  G+D
Sbjct  160  KLKSHSPKV-------GVRAVILSPSRELALQTFKQVKEFTKGTD  197


>sp|A5DAC8|DBP3_PICGU ATP-dependent RNA helicase DBP3 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP3 PE=3 
SV=2
Length=534

 Score = 284 bits (726),  Expect = 7e-86, Method: Composition-based stats.
 Identities = 107/430 (25%), Positives = 176/430 (41%), Gaps = 72/430 (17%)

Query  213  GLAFE---IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKS  269
             L F       H++ Q+     V K  +               D  V +++   G     
Sbjct  124  KLGFRPILSFDHVQLQSKIAPIVTKFPKPTPIQSASWPYLLNGDDVVGVAETGSGKTFAF  183

Query  270  -QHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
               + N  +T  K      + L + P+RELA Q  +N+    K      L  + I GGV 
Sbjct  184  GVPAINNIITDNK---KGLRVLCISPTRELALQIYDNLTMLTKNCG---LTCVAIYGGVP  237

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
               Q+  ++    +VV TPGRL DL++ G ++LS + +LVLDEAD +L +G+ + I  + 
Sbjct  238  KDQQIKAVKT-ASVVVATPGRLVDLLNDGAVDLSTIDYLVLDEADRMLEKGFEEDIKNII  296

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDS--VPDTVHHVVV  446
                      K+ Q ++ +AT    +V++L+   M+    V +   D       +   V 
Sbjct  297  GC------TNKQRQTLMFTATWPK-EVRELAATFMNKAVKVSIGNRDELAANKRITQTVE  349

Query  447  PVNP--KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
             ++P  K  RL + L +                                           
Sbjct  350  VMDPRDKERRLLQLLRQY-----------------------------------------G  368

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
               + ++F   K +   +E    + G         F+   +HGD    +R   L+ FK+G
Sbjct  369  SDQKILVFALYKKEATRVEAMLRRSG---------FNVAAIHGDLSQQQRTSALDSFKRG  419

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            D   L+ TDVAARG+DI  V  VIN+T P   ++YVHRIGR GRA + G+A +L    ++
Sbjct  420  DSNLLLATDVAARGLDIPNVKVVINLTFPLTVEDYVHRIGRTGRAGQTGIAHTLFTEHEK  479

Query  625  KVWYHVCSSR  634
             +   + +  
Sbjct  480  HLSGALMNVL  489


 Score = 92.5 bits (228),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 39/141 (28%), Positives = 58/141 (41%), Gaps = 20/141 (14%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F  + +  +IA  V +  +  PT IQ+ S P +L G DV+  AETGSGKT AF +P 
Sbjct  130  ILSFDHVQLQSKIAPIVTK--FPKPTPIQSASWPYLLNGDDVVGVAETGSGKTFAFGVPA  187

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC---------  111
            I  +        + KKG   +    S   +  +  YD  +         C          
Sbjct  188  INNI------ITDNKKGLRVLC--ISPTRELALQIYDNLTMLTKNCGLTCVAIYGGVPKD  239

Query  112  -QSREVKEWHGCRATKGLMKG  131
             Q + VK      AT G +  
Sbjct  240  QQIKAVKTASVVVATPGRLVD  260


>sp|Q6CM95|SUB2_KLULA ATP-dependent RNA helicase SUB2 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=SUB2 PE=3 SV=1
Length=437

 Score = 281 bits (718),  Expect = 8e-86, Method: Composition-based stats.
 Identities = 94/409 (23%), Positives = 164/409 (40%), Gaps = 62/409 (15%)

Query  250  PPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQF  309
                G   L +A  G + K+     + + Q   +      +++  +RELA Q  N   +F
Sbjct  86   QSIHGTDVLCQAKSG-LGKTAVFVLSTLQQLDPVQGEVSVVVLCNARELAYQIRNEYLRF  144

Query  310  KKYIDNPKLRELLIIGGVAARDQLSVLENG---VDIVVGTPGRLDDLVSTGKLNLSQVRF  366
             KY+  P ++  +  GG   ++ + +L        I+V TPGRL  LV    ++LS V+ 
Sbjct  145  SKYM--PDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKN  202

Query  367  LVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFP  426
             V+DE D +L       + R    I + T   K  QV++ SATL S +++ +  + +  P
Sbjct  203  FVIDECDKVLE---ELDMRRDVQDIFRATPRDK--QVMMFSATL-SQEIRPICRRFLQNP  256

Query  427  TWVDLKGEDS-VPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW  485
              + +  E       +    + +N K                                  
Sbjct  257  LEIFVDDEAKLTLHGLQQYYIKLNEKE---------------------------------  283

Query  486  SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL  545
                   K     + + + + +Q IIF ++ +  + L +               F  + +
Sbjct  284  -------KNRKLAQLLDDLEFNQVIIFVKSTVRANELTKLL---------NASNFPAITV  327

Query  546  HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR  605
            HG  K  ER    + FK+ + R  + TDV  RGIDI  +   IN  +P+E   Y+HR+GR
Sbjct  328  HGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGR  387

Query  606  VGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYN  654
             GR    GLAIS++++E ++        R         +E    + + N
Sbjct  388  AGRFGTKGLAISMISSEDDEQVLAKIQERFDVKITEFPEEGVDPSTYLN  436


 Score = 75.6 bits (184),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 37/63 (59%), Gaps = 0/63 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F +  + PE+++A+ +  +  P+++Q  +IP  + G DVL  A++G GKT  F +  +
Sbjct  53   TGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTL  112

Query  62   QIV  64
            Q +
Sbjct  113  QQL  115


>sp|Q0I1X0|RHLB_HISS1 ATP-dependent RNA helicase RhlB OS=Histophilus 
somni (strain 129Pt) OX=205914 GN=rhlB PE=3 SV=1
Length=419

 Score = 280 bits (716),  Expect = 8e-86, Method: Composition-based stats.
 Identities = 97/399 (24%), Positives = 161/399 (40%), Gaps = 59/399 (15%)

Query  257  ALSKAPDGYIVKSQHSGNAQVTQTKFLPN--APKALIVEPSRELAEQTLNNIKQFKKYID  314
              ++   G  +    +    + Q   + +   P+ALI+ P+REL  Q  N+       + 
Sbjct  51   GQAQTGTGKTIAFLTATFHHLLQKNNINSSEQPRALILAPTRELVVQIANDANFL---VQ  107

Query  315  NPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADG  374
               L+  L  GG     QL V++ G+DI++GT GR+ D V  G + L  ++ +VLDEAD 
Sbjct  108  ATGLKTGLAYGGEGYDKQLKVIDQGIDILIGTTGRVIDYVKQGIIRLDYIQVVVLDEADR  167

Query  375  LLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE  434
            +   G+   I  +  + P      ++   ++ SATL S+ V++L+ + M+ P +V+++  
Sbjct  168  MFDLGFIRDIRYLLRKCP----VPQQRLTMLFSATL-SYKVRELAFEHMNDPQYVEIEPL  222

Query  435  DSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG  494
                  +                                         E         K 
Sbjct  223  QKTGHRIR----------------------------------------EELFYPSNQDKM  242

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
               +  ++E   ++ IIF  TK  C+ +  Y    G              L GD    +R
Sbjct  243  ALLMTLLEEEWPERCIIFSNTKHRCEEIWGYLSADG---------HRVGLLTGDVMQKKR  293

Query  555  KQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGL  614
               L++F  G +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G+
Sbjct  294  LSLLKQFTDGTLDILVATDVAARGLHIPDVTHVFNYDLPDDCEDYVHRIGRTGRAGESGI  353

Query  615  AISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWY  653
            +IS    E       +    G     ++           
Sbjct  354  SISFACEEYAINLPAIEEYIGHSIPVSQYDAKALIEDLP  392


 Score = 92.9 bits (229),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 60/352 (17%), Positives = 114/352 (32%), Gaps = 60/352 (17%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS++ +   + QA++E  +   T IQA S+P+ L G D+   A+TG+GKT AF    +  
Sbjct  11   FSDLALHRSVQQAIKEKGFEFCTPIQALSLPITLKGQDIAGQAQTGTGKTIAF----LTA  66

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
             +  L  +      +       +   +  +      + F + + GL              
Sbjct  67   TFHHLLQKNNINSSEQPRALILAPTRELVVQI-ANDANFLVQATGL--------------  111

Query  124  ATKGLMKGKHYY-EVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNY  182
             T     G+ Y  ++   DQG+           + +GT      +   G           
Sbjct  112  KTGLAYGGEGYDKQLKVIDQGI----------DILIGTTGRVIDYVKQGIIRL-------  154

Query  183  GEEFTMHDTIGCYLDIDKGHVKFSKNG----KDLGLAFEIPPHMKNQALFPACVLKNAEL  238
                   D I   + +D+    F        + L     +P              K  EL
Sbjct  155  -------DYIQVVV-LDEADRMFDLGFIRDIRYLLRKCPVPQQRLTMLFSATLSYKVREL  206

Query  239  KFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSREL  298
             F    +      +       +  +     S     A +          + +I   ++  
Sbjct  207  AFEHMNDPQYVEIEPLQKTGHRIREELFYPSNQDKMALLMTLLEEEWPERCIIFSNTK--  264

Query  299  AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                 +  ++   Y+     R  L+ G V  + +LS+L+      +DI+V T
Sbjct  265  -----HRCEEIWGYLSADGHRVGLLTGDVMQKKRLSLLKQFTDGTLDILVAT  311


>sp|B0UUZ9|RHLB_HISS2 ATP-dependent RNA helicase RhlB OS=Histophilus 
somni (strain 2336) OX=228400 GN=rhlB PE=3 SV=1
Length=419

 Score = 280 bits (716),  Expect = 8e-86, Method: Composition-based stats.
 Identities = 97/399 (24%), Positives = 161/399 (40%), Gaps = 59/399 (15%)

Query  257  ALSKAPDGYIVKSQHSGNAQVTQTKFLPN--APKALIVEPSRELAEQTLNNIKQFKKYID  314
              ++   G  +    +    + Q   + +   P+ALI+ P+REL  Q  N+       + 
Sbjct  51   GQAQTGTGKTIAFLTATFHHLLQKNNINSSEQPRALILAPTRELVVQIANDANFL---VQ  107

Query  315  NPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADG  374
               L+  L  GG     QL V++ G+DI++GT GR+ D V  G + L  ++ +VLDEAD 
Sbjct  108  ATGLKTGLAYGGEGYDKQLKVIDRGIDILIGTTGRVIDYVKQGIIRLDYIQVVVLDEADR  167

Query  375  LLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE  434
            +   G+   I  +  + P      ++   ++ SATL S+ V++L+ + M+ P +V+++  
Sbjct  168  MFDLGFIRDIRYLLRKCP----VPQQRLTMLFSATL-SYKVRELAFEHMNDPQYVEIEPL  222

Query  435  DSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG  494
                  +                                         E         K 
Sbjct  223  QKTGHRIR----------------------------------------EELFYPSNQDKM  242

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
               +  ++E   ++ IIF  TK  C+ +  Y    G              L GD    +R
Sbjct  243  ALLMTLLEEEWPERCIIFSNTKHRCEEIWGYLSADG---------HRVGLLTGDVMQKKR  293

Query  555  KQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGL  614
               L++F  G +  L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA   G+
Sbjct  294  LSLLKQFTDGTLDVLVATDVAARGLHIPDVTHVFNYDLPDDCEDYVHRIGRTGRAGESGI  353

Query  615  AISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWY  653
            +IS    E       +    G     ++           
Sbjct  354  SISFACEEYAINLPAIEEYIGHSIPVSQYDAKALIEDLP  392


 Score = 90.2 bits (222),  Expect = 9e-18, Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 114/352 (32%), Gaps = 60/352 (17%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS++ +   + QA++E  +   T IQA S+P+ L G D+   A+TG+GKT AF    +  
Sbjct  11   FSDLALHRIVQQAIKEKGFEFCTPIQALSLPITLKGQDIAGQAQTGTGKTIAF----LTA  66

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
             +  L  +      +       +   +  +      + F + + GL              
Sbjct  67   TFHHLLQKNNINSSEQPRALILAPTRELVVQI-ANDANFLVQATGL--------------  111

Query  124  ATKGLMKGKHYY-EVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNY  182
             T     G+ Y  ++   D+G+           + +GT      +   G           
Sbjct  112  KTGLAYGGEGYDKQLKVIDRGI----------DILIGTTGRVIDYVKQGIIRL-------  154

Query  183  GEEFTMHDTIGCYLDIDKGHVKFSKNG----KDLGLAFEIPPHMKNQALFPACVLKNAEL  238
                   D I   + +D+    F        + L     +P              K  EL
Sbjct  155  -------DYIQVVV-LDEADRMFDLGFIRDIRYLLRKCPVPQQRLTMLFSATLSYKVREL  206

Query  239  KFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSREL  298
             F    +      +       +  +     S     A +          + +I   ++  
Sbjct  207  AFEHMNDPQYVEIEPLQKTGHRIREELFYPSNQDKMALLMTLLEEEWPERCIIFSNTK--  264

Query  299  AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                 +  ++   Y+     R  L+ G V  + +LS+L+      +D++V T
Sbjct  265  -----HRCEEIWGYLSADGHRVGLLTGDVMQKKRLSLLKQFTDGTLDVLVAT  311


>sp|P26196|DDX6_HUMAN Probable ATP-dependent RNA helicase DDX6 
OS=Homo sapiens OX=9606 GN=DDX6 PE=1 SV=2
Length=483

 Score = 282 bits (722),  Expect = 8e-86, Method: Composition-based stats.
 Identities = 98/433 (23%), Positives = 169/433 (39%), Gaps = 66/433 (15%)

Query  210  KDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKS  269
            KDL +        K       C+ +   +       E   P ++  + ++ +    + ++
Sbjct  81   KDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARA  140

Query  270  QHSGN-------AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
            ++            + +     +  +A+++ P+RELA Q      Q  K++     + + 
Sbjct  141  KNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGA--KVMA  198

Query  323  IIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD  382
              GG   RD +  L++ V +V+ TPGR+ DL+  G   +  V+ +VLDEAD LLSQ +  
Sbjct  199  TTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQ  258

Query  383  FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH  442
             +  +   +P      K  Q+++ SAT     V+K     +  P  ++L  E+     V 
Sbjct  259  IMEDIILTLP------KNRQILLYSATFP-LSVQKFMNSHLQKPYEINLM-EELTLKGVT  310

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
                 V  +                                         K         
Sbjct  311  QYYAYVTERQ----------------------------------------KVHCLNTLFS  330

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
              +++Q+IIFC +    + L +   Q G         +SC  +H   +   R +    F+
Sbjct  331  RLQINQSIIFCNSSQRVELLAKKISQLG---------YSCFYIHAKMRQEHRNRVFHDFR  381

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             G  R L+CTD+  RGIDI  V  VIN   P   + Y+HRIGR GR   +GLAI+L+  +
Sbjct  382  NGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYD  441

Query  623  KEKVWYHVCSSRG  635
                   +    G
Sbjct  442  DRFNLKSIEEQLG  454


 Score = 92.9 bits (229),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 33/128 (26%), Positives = 57/128 (45%), Gaps = 3/128 (2%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +  +  E+   + EM W  P+ IQ ESIP+ L G D+L  A+ G+GK+GA+ IP+++ 
Sbjct  98   FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER  157

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEW---H  120
            +     + Q      T            Q++ +  G+     + G   +   ++     H
Sbjct  158  LDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVH  217

Query  121  GCRATKGL  128
               AT G 
Sbjct  218  VVIATPGR  225


>sp|Q2GUI4|DBP3_CHAGB ATP-dependent RNA helicase DBP3 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=DBP3 PE=3 SV=1
Length=566

 Score = 285 bits (728),  Expect = 9e-86, Method: Composition-based stats.
 Identities = 106/383 (28%), Positives = 163/383 (43%), Gaps = 49/383 (13%)

Query  252  KDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP--------KALIVEPSRELAEQTL  303
                + +++   G  +        +   +   PN          +A++V P+RELA QT 
Sbjct  218  GRDVIGIAETGSGKTMAFAV-PCIESLASSPKPNHAKGDRTAYARAVVVSPTRELAMQTH  276

Query  304  NNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN--GVDIVVGTPGRLDDLVSTGKLNL  361
              +      +    L  + + GG    DQ ++L    G DI+V TPGRL D +S G ++L
Sbjct  277  AAMSSLASLVG---LSVVCLYGGAPKDDQRALLRKNSGADIIVATPGRLKDFLSEGCVSL  333

Query  362  SQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEK  421
            S V F VLDEAD +L +G+ + I  +           ++ Q ++ +AT  +  V+ L+E 
Sbjct  334  SDVMFAVLDEADRMLDKGFEEDIKLILG----SCRPREKRQTLMFTATWPT-SVRGLAEG  388

Query  422  IMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANS  481
             M  P    +       +                   L  +      V   D        
Sbjct  389  FMIDPVKATIGNRTRAGE----------EGEGNGSTELQANIRIEQKVEVVDPRGKEQRL  438

Query  482  PEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFS  541
             E+  EA K              K D+ ++FC  K +   +EQ   ++G           
Sbjct  439  LELLKEAQK-----------GSAKNDRILVFCLYKKEAVRVEQNLERRG---------IR  478

Query  542  CVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH  601
               +HGD +  +R ++LE FK G    L+ TDVAARG+DI  V  VINVT P   ++YVH
Sbjct  479  VCSIHGDLRQDQRTRSLESFKAGTTSVLVATDVAARGLDIPEVKLVINVTFPLTIEDYVH  538

Query  602  RIGRVGRAERMGLAISLVATEKE  624
            RIGR GRA + G AI+L     +
Sbjct  539  RIGRTGRAGKKGKAITLFTEHDK  561


 Score = 89.8 bits (221),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 29/84 (35%), Positives = 41/84 (49%), Gaps = 1/84 (1%)

Query  22   WLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQ-EGKKGKTT  80
            +  PT IQA S P  L G DV+  AETGSGKT AF++P I+ +  + K    +G +    
Sbjct  201  FTAPTPIQAASWPFALSGRDVIGIAETGSGKTMAFAVPCIESLASSPKPNHAKGDRTAYA  260

Query  81   IKTGASVLNKWQMNPYDRGSAFAI  104
                 S   +  M  +   S+ A 
Sbjct  261  RAVVVSPTRELAMQTHAAMSSLAS  284


>sp|A1D6X9|DBP8_NEOFI ATP-dependent RNA helicase dbp8 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp8 
PE=3 SV=1
Length=526

 Score = 283 bits (725),  Expect = 1e-85, Method: Composition-based stats.
 Identities = 107/478 (22%), Positives = 180/478 (38%), Gaps = 74/478 (15%)

Query  212  LGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQH  271
            L +A  +   +   A+     ++ A +         +       +  S+   G  +    
Sbjct  101  LNVAPWLVGSLTTMAVRKPTAIQKACIP--------EILKGRDCIGGSRTGSGKTIAFSV  152

Query  272  SGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARD  331
                 + +    P     +++ P+RELA Q    IK          ++ +LI GG   R 
Sbjct  153  ---PMLQKWAEDPFGIFGVVLTPTRELALQIFEQIKAISA---PQSMKPVLITGGTDMRP  206

Query  332  QLSVLENGVDIVVGTPGRLDDLVSTGKLN----LSQVRFLVLDEADGLLSQGYSDFINRM  387
            Q   L     +V+ TPGRL D + +   +    L +VR +VLDEAD LL+ G    +  +
Sbjct  207  QAIALAGRPHVVIATPGRLADHIKSSGEDTVCGLKRVRMVVLDEADRLLASGPGSMLPDV  266

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKL------SEKIMHFPTWVDLKGEDSVPDTV  441
               +  +    +  Q ++ +AT+   +V+ L      + K   F T +  + + S+P T+
Sbjct  267  ETCLSALPPSSE-RQTLLFTATVTP-EVRALKNMPRSANKPPVFVTEISTENQGSIPPTL  324

Query  442  HHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI  501
                + V      L  R    H+                                 + + 
Sbjct  325  KQTYLKVP-----LTHREAFLHV---------------------------------LLST  346

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
            +++    AIIFC      D LE+   +                LH      ER  NL RF
Sbjct  347  EDNASRPAIIFCNHTKTADLLERMLRRL---------THRVTSLHSLLPQSERNANLARF  397

Query  562  KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT  621
            +    R L+ TDVA+RG+DI  V  VIN  +P    +YVHR+GR  RA R G AI+LV  
Sbjct  398  RASAARILVATDVASRGLDIPTVSLVINYDVPRNPDDYVHRVGRTARAGRSGEAITLVGQ  457

Query  622  EKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKV  679
               ++   +    G+       +E            +L E+ E     + +++    V
Sbjct  458  RDVQLVLAIEERVGRQMEEWS-EEGVSIEGRLVRTGVLKEVGEAKREAMGEIDEGRDV  514


 Score = 98.3 bits (243),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 46/103 (45%), Gaps = 9/103 (9%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            ++F+ + V P +  ++  M    PT IQ   IP IL G D +  + TGSGKT AFS+P++
Sbjct  96   SSFAALNVAPWLVGSLTTMAVRKPTAIQKACIPEILKGRDCIGGSRTGSGKTIAFSVPML  155

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            Q   E                   +   +  +  +++  A + 
Sbjct  156  QKWAE---------DPFGIFGVVLTPTRELALQIFEQIKAISA  189


>sp|A5DBI5|DBP5_PICGU ATP-dependent RNA helicase DBP5 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP5 PE=3 
SV=1
Length=482

 Score = 282 bits (721),  Expect = 1e-85, Method: Composition-based stats.
 Identities = 107/462 (23%), Positives = 192/462 (42%), Gaps = 83/462 (18%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K+ ++LGL+ E+   +          ++   L                 +  S++  G  
Sbjct  92   KSFEELGLSPELLKGLYAMKFNKPSKIQEKALPLLISNPP------KNMIGQSQSGTGKT  145

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
                 +    +++        + + + P+RELA QTL  I    K+    K+   L++  
Sbjct  146  AAFSLT---MLSRVDVNDPNTQCICLSPTRELARQTLEVITTMGKF---TKVTTQLVVPQ  199

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLS-QGYSDFIN  385
               ++Q +       IVVGTPG L D++    L   +V+  VLDEAD +L  QG +    
Sbjct  200  AMEKNQGTQ----AHIVVGTPGTLLDMIKRKLLRTGKVKVFVLDEADNMLDGQGLAAQCI  255

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
            R+   +P         Q+++ SAT  + +V+K +EK +     ++LK E+   D +  + 
Sbjct  256  RVKKVLPTS------CQLVLFSATFPT-EVRKYAEKFVPNANSLELKQEELNVDAIKQLY  308

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
            +  + +  +                            E+ SE   +L             
Sbjct  309  MDCDSEKHK---------------------------AEVLSELYGLL------------T  329

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
            +  +IIF +TK   + L      +G          +C  LH D    ER + ++ F++G 
Sbjct  330  IGSSIIFVKTKATANYLYAKMKSEG---------HACSILHSDLDNSERDKLIDDFREGR  380

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQN------YVHRIGRVGRAERMGLAISLV  619
             + LI T+V ARGIDI  V  V+N  +P +K +      Y+HRIGR GR  R+G+A+S V
Sbjct  381  SKVLITTNVLARGIDIASVSMVVNYDIPVDKDDKPDPSTYLHRIGRTGRFGRVGVAVSFV  440

Query  620  ATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE  661
                +K +  +   R    Y   ++     T  ++E++ + +
Sbjct  441  H--DKKSYEDLEQIRS---YFNDIEMTRVPTDDWDEVEKIVK  477


 Score = 88.6 bits (218),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 21/106 (20%), Positives = 49/106 (46%), Gaps = 11/106 (10%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            + +F E+G+ PE+ + +  M +  P+ IQ +++PL++     +++  +++G+GKT AFS+
Sbjct  91   VKSFEELGLSPELLKGLYAMKFNKPSKIQEKALPLLISNPPKNMIGQSQSGTGKTAAFSL  150

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
             ++  V     + Q             S   +      +  +    
Sbjct  151  TMLSRVDVNDPNTQ---------CICLSPTRELARQTLEVITTMGK  187


>sp|Q4WRV2|DRS1_ASPFU ATP-dependent RNA helicase drs1 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=drs1 PE=3 SV=1
Length=830

 Score = 291 bits (745),  Expect = 1e-85, Method: Composition-based stats.
 Identities = 105/482 (22%), Positives = 188/482 (39%), Gaps = 73/482 (15%)

Query  205  FSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDG  264
            F+++ +D  L+  I   + +        ++   +                 V  +    G
Sbjct  308  FNRSFQDFNLSRPILRGLASVNFTTPTPIQQKTIPVAL--------LGKDIVGSAVTGSG  359

Query  265  YIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
                       ++          +  I+ P+RELA Q  N   +   + D   +    ++
Sbjct  360  KTAAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATHTD---ITFCQLV  416

Query  325  GGVAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDF  383
            GG + R+Q ++L+   D+++ TPGR +D + ++    +  +  LVLDEAD +L  G++D 
Sbjct  417  GGFSLREQENILKKRPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEDGFADE  476

Query  384  INRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHH  443
            +N +   IP      K  Q ++ SAT+    V KL    ++ P  + +  + +    +  
Sbjct  477  LNEILTTIP------KSRQTMLFSATMTD-SVDKLIRVGLNRPVRLMVDSKKNTSMNLTQ  529

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
              V + P   R  +RLG                                   Y +    E
Sbjct  530  EFVRLRP--GREDKRLG-----------------------------------YLLYLCNE  552

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
                + I+F R K +   +   F   G              LHG     +R +++E F++
Sbjct  553  IYTGRVIVFFRQKREAHRVRIVFGLLG---------LKAAELHGSMSQEQRIKSVENFRE  603

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
            G V FL+ TD+A+RG+DI GV  VIN   P   + Y+HR+GR  RA R G A ++ A   
Sbjct  604  GKVAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPD  663

Query  624  EKVWYHVCSS--RGKGCYNTRLKEDGGCTIWYNEMQLLSEI------EEHLNCTISQVEP  675
             K+      +         +R+ +      W  + + L +       EE L   ++Q E 
Sbjct  664  RKIVKSAVKAGKAQGAKIVSRVVDPAVADEWAAKAKGLEDEIEEVLQEEKLEKQMAQAEM  723

Query  676  DI  677
             +
Sbjct  724  QV  725


 Score = 109 bits (271),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 54/111 (49%), Gaps = 6/111 (5%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +F +  +   I + +  +++  PT IQ ++IP+ L G D++ +A TGSGKT AF +P++
Sbjct  310  RSFQDFNLSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPIL  369

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQ  112
            + +          +K  T+         +  +  Y+  +  A  +D   CQ
Sbjct  370  ERLLFRP------RKVPTSRVAILMPTRELAVQCYNVATKLATHTDITFCQ  414


>sp|Q6CCZ1|PRP5_YARLI Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) 
OX=284591 GN=PRP5 PE=3 SV=1
Length=974

 Score = 294 bits (752),  Expect = 1e-85, Method: Composition-based stats.
 Identities = 97/454 (21%), Positives = 186/454 (41%), Gaps = 48/454 (11%)

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
            +K +       T      + P  +I+ P+REL  Q   +++ F   ++   L  +   GG
Sbjct  440  IKHRVGVETHTTTLSGASSHPLGVIITPTRELCVQIYRDLRPFLAALE---LTAVCAYGG  496

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLV---STGKLNLSQVRFLVLDEADGLLSQGYSDF  383
               +DQ++ L+ G  I+V TPGR+ DL+       L+LS+V FLV+DEAD +   G+   
Sbjct  497  SPIKDQIAALKKGTHIIVCTPGRMIDLLAANQGRVLSLSRVTFLVIDEADRMFDMGFEPQ  556

Query  384  INRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF-------PTWVDLKGEDS  436
            + ++   I          Q ++ SAT     +++L+ +++         P  + +     
Sbjct  557  VLKLTQSI------RPDRQTVLFSATFPK-KMEQLARRVLSKRSSDSLGPIEIIVGARSV  609

Query  437  VPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEY  496
            V   +   V     +  +    L             + +     + E  +  I       
Sbjct  610  VASEITQFVEVFQNEKSKFPRLLEVLGKYFAQGFFDEQSEGRVGTGESAATPI-------  662

Query  497  AVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQ  556
                       + +IF   +   D+L +  IQ G         + C+ +HG ++  +R Q
Sbjct  663  --------PNPKCLIFVERQESADSLLKELIQSG---------YPCLSIHGGKEQADRDQ  705

Query  557  NLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAI  616
             +  FK G V  LI T VAARG+D+ G+  V+N   P+  ++YVHR+GR GRA + G A+
Sbjct  706  AISDFKSGLVSVLIATSVAARGLDVKGLGLVVNWDSPNHMEDYVHRVGRTGRAGQKGTAL  765

Query  617  SLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPD  676
            + + +++E++   +  +                  +  +++  +E       +   +E  
Sbjct  766  TFLLSDQERLAAEISRAIKSSGNAPPAPVQLMTERFEFKVRSGTEKRHMYGFSGKGLER-  824

Query  677  IKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAP  710
                 DE D    + ++   G  + +   +   P
Sbjct  825  ---LQDERDATREHERRAYEGDEAGEAETESSTP  855


 Score = 105 bits (261),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 77/372 (21%), Positives = 137/372 (37%), Gaps = 53/372 (14%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++ ++++G+       + ++ +  PT IQA++IP ++ G DV+  A+TGSGKT AF +P+
Sbjct  377  ISKWTQLGLPGPTMGVLNDLRYDKPTSIQAQAIPAVMSGRDVISVAKTGSGKTLAFLLPM  436

Query  61   IQIVYETLKDQQEGKKGKTTIKTGAS---------VLNKWQMNPYDRGSAF--AIGSDGL  109
            ++ +       + G +  TT  +GAS            +  +  Y     F  A+    +
Sbjct  437  LRHIKH-----RVGVETHTTTLSGASSHPLGVIITPTRELCVQIYRDLRPFLAALELTAV  491

Query  110  CCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGG  169
            C       +         L KG H   +     G   +          L   +  F    
Sbjct  492  CAYGGSPIKDQIA----ALKKGTH---IIVCTPGRM-IDLLAANQGRVLSLSRVTFLVID  543

Query  170  TGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNG--KDLGLAFEIPPHMKNQAL  227
               +  +  F+    + T        +  D+  V FS     K   LA  +     + +L
Sbjct  544  EADRMFDMGFEPQVLKLTQS------IRPDRQTVLFSATFPKKMEQLARRVLSKRSSDSL  597

Query  228  FP---------ACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVT  278
             P             +  +    F  E+ KFP     +    A   +  +S+       +
Sbjct  598  GPIEIIVGARSVVASEITQFVEVFQNEKSKFPRLLEVLGKYFAQGFFDEQSEGRVGTGES  657

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG--VAARDQ-LSV  335
                +PN PK LI    +E A+          K +       L I GG   A RDQ +S 
Sbjct  658  AATPIPN-PKCLIFVERQESAD-------SLLKELIQSGYPCLSIHGGKEQADRDQAISD  709

Query  336  LENG-VDIVVGT  346
             ++G V +++ T
Sbjct  710  FKSGLVSVLIAT  721


>sp|Q6CIR0|DBP10_KLULA ATP-dependent RNA helicase DBP10 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / 
NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP10 PE=3 SV=1
Length=973

 Score = 294 bits (752),  Expect = 1e-85, Method: Composition-based stats.
 Identities = 109/451 (24%), Positives = 182/451 (40%), Gaps = 40/451 (9%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
                GL+  +  ++  +       ++   +             K   V +++   G    
Sbjct  128  FASFGLSKLVLINISKKGFRQPTPIQRKTIPLIL--------QKRDIVGMARTGSGKTAA  179

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
                   ++ +T       +A+I+ PSRELA QT    K+F K      LR +L+ GG +
Sbjct  180  FVLPMIEKL-KTHSAKIGVRAVILSPSRELAIQTHRVFKEFSK---GSDLRSILLTGGDS  235

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
              DQ  ++    D+V+ TPGR   L     L+L  V ++V DEAD L   G+ + +N + 
Sbjct  236  LEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELL  295

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
               P         Q ++ SATL S  V   ++  +  P  V L  E  + + +  + + +
Sbjct  296  VAFPT------NRQTLLFSATLPSSLV-DFAKAGLSNPVLVRLDAETKISENLEMLFISI  348

Query  449  NPKTDR-----LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
                       L +   K  + T+    K   +  A+S    SE  K  K + A ++ + 
Sbjct  349  KKDEREANLLYLLQEAIKMPVATESQIKKLKQQNDADSDSDDSEDEKKKKAKKAKKSKRR  408

Query  504  HKM-------DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQ  556
                         I+F  T+   + + Q     G         +    ++G    H RKQ
Sbjct  409  LPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCG---------YLVSYIYGALNQHARKQ  459

Query  557  NLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAI  616
             L  F+ G    L+ TDVAARG+DI  +  VIN +LP   + ++HR+GR  RA   G A 
Sbjct  460  QLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAF  519

Query  617  SLVATEKEKVWYHVCSSRGKGCYNTRLKEDG  647
            S+V+  +      +    GK    T + E  
Sbjct  520  SIVSENELPYLLDLELFLGKKILLTPMYESS  550


 Score = 102 bits (255),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 30/105 (29%), Positives = 50/105 (48%), Gaps = 7/105 (7%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F+  G+   +   + +  +  PT IQ ++IPLIL   D++  A TGSGKT AF +P+I+
Sbjct  127  SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE  186

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
             +          K G   +    S   +  +  +     F+ GSD
Sbjct  187  KLKTHS-----AKIGVRAV--ILSPSRELAIQTHRVFKEFSKGSD  224


>sp|Q6FM43|PRP28_CANGA Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 
/ JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=PRP28 
PE=3 SV=1
Length=582

 Score = 285 bits (728),  Expect = 1e-85, Method: Composition-based stats.
 Identities = 95/392 (24%), Positives = 166/392 (42%), Gaps = 61/392 (16%)

Query  253  DGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP------NAPKALIVEPSRELAEQTLNNI  306
               + ++    G  +       A++      P      + P AL++ P+RELA+Q    I
Sbjct  214  RDILGIASTGSGKTLAFSIPILARLDALPARPVNLKTLDGPLALVLVPTRELAQQISQEI  273

Query  307  KQF-KKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVR  365
             +    + +   L  + I+GG +  D    L NG DI++ TPGRL D++    + L++++
Sbjct  274  NRLLSAWENKKNLNAVSIVGGHSMSDISHTLRNGCDILIATPGRLLDVLDNHLVVLNKIQ  333

Query  366  FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF  425
             LVLDEAD ++  G+ D +  + + +  +  +    Q ++ +ATL S  V+ +++  +  
Sbjct  334  SLVLDEADRMIDLGFEDQMKSILSHL--MADELAARQTMLFTATL-SSSVESIAKGYLKN  390

Query  426  PTWVDLKGE-DSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEM  484
            P  V +    DS    +  VV        +L                             
Sbjct  391  PLHVSVGSRWDSDKPLITQVVRHTGDDDKKLS----------------------------  422

Query  485  WSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC  544
                   LK +     +       AIIF   K   D L                +F+ V 
Sbjct  423  ------FLKDDLIKNGL------PAIIFINYKETADWLTLRL----------SDRFNIVT  460

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            LHG +   +R+  +++ K G    LI T+VAARG+DI  V  V+N  +  +  +Y+HRIG
Sbjct  461  LHGSKSQSQRESAIQKLKSGTANVLIATNVAARGLDIPDVALVVNFQMSKKFDDYIHRIG  520

Query  605  RVGRAERMGLAISLVATEKEKVWYHVCSSRGK  636
            R GRA + G+A++ +  E++       +   K
Sbjct  521  RTGRAGKTGIAVTYLTGEEDPQLIKQLAKYVK  552


 Score = 81.3 bits (199),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 28/109 (26%), Positives = 45/109 (41%), Gaps = 7/109 (6%)

Query  1    MAAFSEMGVMP-EIAQAVEE-MDWLLPTDIQAESIPLILGG-----GDVLMAAETGSGKT  53
            +  +SE  V+P ++ +A+ E M +  PT IQ  +IP  +        D+L  A TGSGKT
Sbjct  168  LRNWSETNVIPTDLVRALTEGMGFDEPTAIQRITIPNAISSNKSVPRDILGIASTGSGKT  227

Query  54   GAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
             AFSIP++  +          K     +        +         +  
Sbjct  228  LAFSIPILARLDALPARPVNLKTLDGPLALVLVPTRELAQQISQEINRL  276


>sp|A5DF03|PRP28_PICGU Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Meyerozyma guilliermondii (strain ATCC 6260 / 
CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 
GN=PRP28 PE=3 SV=2
Length=575

 Score = 285 bits (728),  Expect = 1e-85, Method: Composition-based stats.
 Identities = 101/449 (22%), Positives = 183/449 (41%), Gaps = 68/449 (15%)

Query  210  KDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKS  269
            K+ G+   +   +          ++ A +    G  +         V +++   G  +  
Sbjct  153  KESGIPTTLLNTIDQLGYKEPTPIQRAAIPTALGHRD--------VVGIAETGSGKTLAF  204

Query  270  QHSGNAQVTQT-----------KFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKL  318
                 + ++             +   N    L++ P+RELA Q     K+F   +     
Sbjct  205  LIPLLSYLSAIDKDYMEVEHKQESNLNKVLGLVLAPTRELALQISKEAKKFASVLG---Y  261

Query  319  RELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQ  378
              + IIGG    + +  +++G  IVV TPGRL D    G ++LSQ   L +DEAD ++  
Sbjct  262  NVVTIIGGHQYEETVKSVQDGAHIVVATPGRLIDSAEKGLIDLSQCYHLTMDEADRMIDM  321

Query  379  GYSDFINRMHNQIPQVTSDG----------KRLQVIVCSATLHSFDVKKLSEKIMHFPTW  428
            G+   +  + + +P  +S G          K    ++ +AT+ S  ++K+++  +  P +
Sbjct  322  GFEKALQSILSFLPSTSSSGFGLDSTIFKVKSRITLMFTATI-SPPIEKITKDYLQTPAY  380

Query  429  VDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEA  488
            + +     + D ++              E LG +    ++++A    +  +         
Sbjct  381  LYIGDAGEIVDNINQKF-----------EYLGDNVDSQEELNAPRTNKMISA--------  421

Query  489  IKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGD  548
                      + I+E +    IIF   K  C+ L      Q  G        S + +HG 
Sbjct  422  --------LRQHIRETEQPLIIIFANFKRTCELLSVELSNQNVG--------SNIVIHGS  465

Query  549  RKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
            +    R+  +  F++  V  LI TDVAARGIDI  V  V+N  +P     Y+HRIGR GR
Sbjct  466  KSQEARESAIASFREHKVNVLIATDVAARGIDIPNVSLVVNYHMPKRFDEYIHRIGRTGR  525

Query  609  AERMGLAISLVATEKEKVWYHVCSSRGKG  637
            A + G ++S V     ++  ++ S   KG
Sbjct  526  AGKSGASLSFVDDGDSEILVNLKSFLSKG  554


 Score = 105 bits (263),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 7/110 (6%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + ++ E G+   +   ++++ +  PT IQ  +IP  LG  DV+  AETGSGKT AF IP+
Sbjct  149  LRSWKESGIPTTLLNTIDQLGYKEPTPIQRAAIPTALGHRDVVGIAETGSGKTLAFLIPL  208

Query  61   IQIVYETLKD------QQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            +  +    KD      +QE    K  +    +   +  +        FA 
Sbjct  209  LSYLSAIDKDYMEVEHKQESNLNK-VLGLVLAPTRELALQISKEAKKFAS  257


>sp|Q8P4D4|RHLB_XANCP ATP-dependent RNA helicase RhlB OS=Xanthomonas 
campestris pv. campestris (strain ATCC 33913 / DSM 3586 
/ NCPPB 528 / LMG 568 / P 25) OX=190485 GN=rhlB PE=3 SV=1
Length=573

 Score = 284 bits (727),  Expect = 1e-85, Method: Composition-based stats.
 Identities = 95/381 (25%), Positives = 155/381 (41%), Gaps = 62/381 (16%)

Query  257  ALSKAPDGYIVKSQHSGNAQV----TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKY  312
              ++   G  +    +   ++          P  P+ALI+ P+RELA Q   +  +F   
Sbjct  51   GQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGA-  109

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVST-GKLNLSQVRFLVLDE  371
              +  LR  L+ GGV    Q  +L+ GVD+++ TPGRL D V     ++L      VLDE
Sbjct  110  --DLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDE  167

Query  372  ADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL  431
            AD +   G+   I  +  ++P+        Q ++ SATL S  V +L+ + M+ P  + +
Sbjct  168  ADRMFDLGFIKDIRFLLRRMPE----RGTRQTLLFSATL-SHRVLELAYEHMNEPEKLVV  222

Query  432  KGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
            + E      V   +   + +                                        
Sbjct  223  ETETITAARVRQRIYFPSDEE---------------------------------------  243

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
             K    +  +   +  + ++F  TK   + + +   + G         +    L GD   
Sbjct  244  -KQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHG---------YRVGVLSGDVPQ  293

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
             +R+  L RF+KG +  L+ TDVAARG+ I GV YV N  LP + ++YVHRIGR  R   
Sbjct  294  KKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGE  353

Query  612  MGLAISLVATEKEKVWYHVCS  632
             G AIS            + +
Sbjct  354  EGDAISFACERYAMSLPDIEA  374


 Score = 98.3 bits (243),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 45/103 (44%), Gaps = 2/103 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             FS   + P +   +E   +   T IQA ++P+ L GGDV   A+TG+GKT AF + V+ 
Sbjct  10   TFSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMN  69

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG  105
             +   ++     +K +       +   +  +  +     F   
Sbjct  70   RLL--IRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGAD  110


>sp|B0RWT6|RHLB_XANCB ATP-dependent RNA helicase RhlB OS=Xanthomonas 
campestris pv. campestris (strain B100) OX=509169 GN=rhlB 
PE=3 SV=1
Length=573

 Score = 284 bits (727),  Expect = 1e-85, Method: Composition-based stats.
 Identities = 95/381 (25%), Positives = 155/381 (41%), Gaps = 62/381 (16%)

Query  257  ALSKAPDGYIVKSQHSGNAQV----TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKY  312
              ++   G  +    +   ++          P  P+ALI+ P+RELA Q   +  +F   
Sbjct  51   GQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGA-  109

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVST-GKLNLSQVRFLVLDE  371
              +  LR  L+ GGV    Q  +L+ GVD+++ TPGRL D V     ++L      VLDE
Sbjct  110  --DLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDE  167

Query  372  ADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL  431
            AD +   G+   I  +  ++P+        Q ++ SATL S  V +L+ + M+ P  + +
Sbjct  168  ADRMFDLGFIKDIRFLLRRMPE----RGTRQTLLFSATL-SHRVLELAYEHMNEPEKLVV  222

Query  432  KGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
            + E      V   +   + +                                        
Sbjct  223  ETETITAARVRQRIYFPSDEE---------------------------------------  243

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
             K    +  +   +  + ++F  TK   + + +   + G         +    L GD   
Sbjct  244  -KQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHG---------YRVGVLSGDVPQ  293

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
             +R+  L RF+KG +  L+ TDVAARG+ I GV YV N  LP + ++YVHRIGR  R   
Sbjct  294  KKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGE  353

Query  612  MGLAISLVATEKEKVWYHVCS  632
             G AIS            + +
Sbjct  354  EGDAISFACERYAMSLPDIEA  374


 Score = 98.3 bits (243),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 45/103 (44%), Gaps = 2/103 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             FS   + P +   +E   +   T IQA ++P+ L GGDV   A+TG+GKT AF + V+ 
Sbjct  10   TFSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMN  69

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG  105
             +   ++     +K +       +   +  +  +     F   
Sbjct  70   RLL--IRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGAD  110


>sp|Q4UPY5|RHLB_XANC8 ATP-dependent RNA helicase RhlB OS=Xanthomonas 
campestris pv. campestris (strain 8004) OX=314565 GN=rhlB 
PE=3 SV=1
Length=573

 Score = 284 bits (727),  Expect = 1e-85, Method: Composition-based stats.
 Identities = 95/381 (25%), Positives = 155/381 (41%), Gaps = 62/381 (16%)

Query  257  ALSKAPDGYIVKSQHSGNAQV----TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKY  312
              ++   G  +    +   ++          P  P+ALI+ P+RELA Q   +  +F   
Sbjct  51   GQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGA-  109

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVST-GKLNLSQVRFLVLDE  371
              +  LR  L+ GGV    Q  +L+ GVD+++ TPGRL D V     ++L      VLDE
Sbjct  110  --DLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDE  167

Query  372  ADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL  431
            AD +   G+   I  +  ++P+        Q ++ SATL S  V +L+ + M+ P  + +
Sbjct  168  ADRMFDLGFIKDIRFLLRRMPE----RGTRQTLLFSATL-SHRVLELAYEHMNEPEKLVV  222

Query  432  KGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
            + E      V   +   + +                                        
Sbjct  223  ETETITAARVRQRIYFPSDEE---------------------------------------  243

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
             K    +  +   +  + ++F  TK   + + +   + G         +    L GD   
Sbjct  244  -KQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHG---------YRVGVLSGDVPQ  293

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
             +R+  L RF+KG +  L+ TDVAARG+ I GV YV N  LP + ++YVHRIGR  R   
Sbjct  294  KKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGE  353

Query  612  MGLAISLVATEKEKVWYHVCS  632
             G AIS            + +
Sbjct  354  EGDAISFACERYAMSLPDIEA  374


 Score = 98.3 bits (243),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 45/103 (44%), Gaps = 2/103 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             FS   + P +   +E   +   T IQA ++P+ L GGDV   A+TG+GKT AF + V+ 
Sbjct  10   TFSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMN  69

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG  105
             +   ++     +K +       +   +  +  +     F   
Sbjct  70   RLL--IRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGAD  110


>sp|Q5ZKB9|DDX6_CHICK Probable ATP-dependent RNA helicase DDX6 
OS=Gallus gallus OX=9031 GN=DDX6 PE=2 SV=1
Length=483

 Score = 282 bits (720),  Expect = 1e-85, Method: Composition-based stats.
 Identities = 98/433 (23%), Positives = 169/433 (39%), Gaps = 66/433 (15%)

Query  210  KDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKS  269
            KDL +        K       C+ +   +       E   P ++  + ++ +    + ++
Sbjct  81   KDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARA  140

Query  270  QHSGN-------AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
            ++            + +     +  +A+++ P+RELA Q      Q  K++     + + 
Sbjct  141  KNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGA--KVMA  198

Query  323  IIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD  382
              GG   RD +  L++ V +V+ TPGR+ DL+  G   +  V+ +VLDEAD LLSQ +  
Sbjct  199  TTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVEHVQMIVLDEADKLLSQDFVQ  258

Query  383  FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH  442
             +  +   +P      K  Q+++ SAT     V+K     +  P  ++L  E+     V 
Sbjct  259  IMEDIILTLP------KNRQILLYSATFP-LSVQKFMNSHLQKPYEINLM-EELTLKGVT  310

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
                 V  +                                         K         
Sbjct  311  QYYAYVTERQ----------------------------------------KVHCLNTLFS  330

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
              +++Q+IIFC +    + L +   Q G         +SC  +H   +   R +    F+
Sbjct  331  RLQINQSIIFCNSSQRVELLAKKISQLG---------YSCFYIHAKMRQEHRNRVFHDFR  381

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             G  R L+CTD+  RGIDI  V  VIN   P   + Y+HRIGR GR   +GLAI+L+  +
Sbjct  382  NGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYD  441

Query  623  KEKVWYHVCSSRG  635
                   +    G
Sbjct  442  DRFNLKSIEEQLG  454


 Score = 92.9 bits (229),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 33/128 (26%), Positives = 57/128 (45%), Gaps = 3/128 (2%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +  +  E+   + EM W  P+ IQ ESIP+ L G D+L  A+ G+GK+GA+ IP+++ 
Sbjct  98   FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER  157

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEW---H  120
            +     + Q      T            Q++ +  G+     + G   +   ++     H
Sbjct  158  LDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVH  217

Query  121  GCRATKGL  128
               AT G 
Sbjct  218  VVIATPGR  225


>sp|Q9WTM2|DDX6_CAVPO Probable ATP-dependent RNA helicase DDX6 
(Fragment) OS=Cavia porcellus OX=10141 GN=DDX6 PE=2 SV=1
Length=472

 Score = 281 bits (719),  Expect = 1e-85, Method: Composition-based stats.
 Identities = 98/433 (23%), Positives = 167/433 (39%), Gaps = 66/433 (15%)

Query  210  KDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKS  269
            KDL +        K       C+ +   +       E   P ++  + ++      + ++
Sbjct  70   KDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALTGRDILARA  129

Query  270  QHSGN-------AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
            ++            + +     +  +A+++ P+RELA Q      Q  K++     + + 
Sbjct  130  KNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGA--KVMA  187

Query  323  IIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD  382
              GG   RD +  L++ V +V+ TPGR+ DL+  G   +  V+ +VLDEAD LLSQ +  
Sbjct  188  TTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQ  247

Query  383  FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH  442
             +  +   +P      K  Q+++ SAT     V+K     +  P  ++L  E+     V 
Sbjct  248  IMEDIILTLP------KNRQILLYSATFP-LSVQKFMNSHLQKPYEINLM-EELTLKGVT  299

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
                 V  +                                         K         
Sbjct  300  QYYAYVTERQ----------------------------------------KVHCLNTLFP  319

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
              + +Q+IIFC +    + L +   Q G         +SC  +H   +   R +    F+
Sbjct  320  RLQTNQSIIFCNSSQRVELLAKKISQLG---------YSCFYIHAKMRQEHRNRVFHDFR  370

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             G  R L+CTD+  RGIDI  V  VIN   P   + Y+HRIGR GR   +GLAI+L+  +
Sbjct  371  NGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYD  430

Query  623  KEKVWYHVCSSRG  635
                   +    G
Sbjct  431  DRFNLKSIEEQLG  443


 Score = 92.1 bits (227),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 33/128 (26%), Positives = 57/128 (45%), Gaps = 3/128 (2%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +  +  E+   + EM W  P+ IQ ESIP+ L G D+L  A+ G+GK+GA+ IP+++ 
Sbjct  87   FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALTGRDILARAKNGTGKSGAYLIPLLER  146

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEW---H  120
            +     + Q      T            Q++ +  G+     + G   +   ++     H
Sbjct  147  LDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVH  206

Query  121  GCRATKGL  128
               AT G 
Sbjct  207  VVIATPGR  214


>sp|Q54Y81|DDX23_DICDI ATP-dependent RNA helicase ddx23 OS=Dictyostelium 
discoideum OX=44689 GN=helB2 PE=2 SV=1
Length=834

 Score = 291 bits (744),  Expect = 2e-85, Method: Composition-based stats.
 Identities = 104/455 (23%), Positives = 180/455 (40%), Gaps = 80/455 (18%)

Query  210  KDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDG----Y  265
            ++  L  EI   ++         ++   +  +              + +++   G    +
Sbjct  416  QESNLPREILEAIRQLGYEKPSPIQMQSIPISL--------TGRDILGIAETGSGKTCAF  467

Query  266  IVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
            ++      + Q   TK    + P AL++ P+REL +Q     + F ++      R + ++
Sbjct  468  VIPMLIYISKQPRLTKDTEADGPYALVMAPTRELVQQIEKETRNFAQHFG---FRVVSLV  524

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            GG +  DQ   +  G +I++ TPGRL+D +    L L+Q  ++VLDEAD ++  G+   +
Sbjct  525  GGQSIEDQAYQVSKGCEIIIATPGRLNDCLEKRYLVLNQCNYIVLDEADMMIDLGFEPQV  584

Query  385  NRMHNQIPQVTSDGKR---------------LQVIVCSATLHSFDVKKLSEKIMHFPTWV  429
              + + +P      +                   I+ SAT+    V+KLS+K +  P  +
Sbjct  585  TSVLDAMPSSFLKSEDDEMAEKQESDRSHIYRTTILFSATMPPL-VEKLSKKYLRRPCTI  643

Query  430  DLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAI  489
             +     V D +   V+ V  + D                                    
Sbjct  644  TIGEAGKVVDRIRQTVIFVKSEND------------------------------------  667

Query  490  KILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDR  549
               K E+  + IK+      IIF   K  CD +          P  +  + S   LH  R
Sbjct  668  ---KKEHLTQLIKDGPPPPIIIFVNKKKHCDIIA---------PVLEECRVSYTILHSGR  715

Query  550  KPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA  609
               +R+  LE FKK     LI T VA+RGI + GV +VIN  +P   ++Y HRIGR GRA
Sbjct  716  SQEQREAALEGFKKRKYEVLIATGVASRGIHVDGVTHVINFDIPKNIEDYTHRIGRTGRA  775

Query  610  ERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLK  644
               GLA S +  +  ++ Y +            ++
Sbjct  776  GSAGLASSFITDKDVEIMYDLKQILTSTNNIVPIE  810


 Score = 106 bits (265),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 49/103 (48%), Gaps = 1/103 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  + E  +  EI +A+ ++ +  P+ IQ +SIP+ L G D+L  AETGSGKT AF IP+
Sbjct  412  IRTWQESNLPREILEAIRQLGYEKPSPIQMQSIPISLTGRDILGIAETGSGKTCAFVIPM  471

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
            +  + +  +   +  +         +   +           FA
Sbjct  472  LIYISKQPR-LTKDTEADGPYALVMAPTRELVQQIEKETRNFA  513


>sp|Q3BNH8|RHLB_XANC5 ATP-dependent RNA helicase RhlB OS=Xanthomonas 
campestris pv. vesicatoria (strain 85-10) OX=316273 GN=rhlB 
PE=3 SV=1
Length=573

 Score = 284 bits (726),  Expect = 2e-85, Method: Composition-based stats.
 Identities = 95/395 (24%), Positives = 158/395 (40%), Gaps = 62/395 (16%)

Query  257  ALSKAPDGYIVKSQHSGNAQV----TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKY  312
              ++   G  +    +   ++          P  P+ALI+ P+RELA Q   +  +F   
Sbjct  51   GQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGA-  109

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVST-GKLNLSQVRFLVLDE  371
              +  LR  L+ GGV    Q  +L+ GVD+++ TPGRL D V     ++L      VLDE
Sbjct  110  --DLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDE  167

Query  372  ADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL  431
            AD +   G+   I  +  ++P+        Q ++ SATL S  V +L+ + M+ P  + +
Sbjct  168  ADRMFDLGFIKDIRFLLRRMPE----RGTRQTLLFSATL-SHRVLELAYEHMNEPEKLVV  222

Query  432  KGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
            + E      V   +   + +                                        
Sbjct  223  ETESITAARVRQRIYFPSDEE---------------------------------------  243

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
             K    +  +   +  + ++F  TK   + + +   + G         +    L GD   
Sbjct  244  -KQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHG---------YRVGVLSGDVPQ  293

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
             +R+  L RF+KG +  L+ TDVAARG+ I GV YV N  LP + ++YVHRIGR  R   
Sbjct  294  KKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGE  353

Query  612  MGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKED  646
             G AIS            + +   +      +  +
Sbjct  354  EGDAISFACERYAMSLPDIEAYIEQKIPVEPVTSE  388


 Score = 98.7 bits (244),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 45/103 (44%), Gaps = 2/103 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             FS   + P +   +E   +   T IQA ++P+ L GGDV   A+TG+GKT AF + V+ 
Sbjct  10   TFSSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMN  69

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG  105
             +   ++     +K +       +   +  +  +     F   
Sbjct  70   RLL--IRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGAD  110


>sp|Q8PFZ3|RHLB_XANAC ATP-dependent RNA helicase RhlB OS=Xanthomonas 
axonopodis pv. citri (strain 306) OX=190486 GN=rhlB PE=3 
SV=1
Length=571

 Score = 284 bits (726),  Expect = 2e-85, Method: Composition-based stats.
 Identities = 95/395 (24%), Positives = 158/395 (40%), Gaps = 62/395 (16%)

Query  257  ALSKAPDGYIVKSQHSGNAQV----TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKY  312
              ++   G  +    +   ++          P  P+ALI+ P+RELA Q   +  +F   
Sbjct  51   GQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGA-  109

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVST-GKLNLSQVRFLVLDE  371
              +  LR  L+ GGV    Q  +L+ GVD+++ TPGRL D V     ++L      VLDE
Sbjct  110  --DLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDE  167

Query  372  ADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL  431
            AD +   G+   I  +  ++P+        Q ++ SATL S  V +L+ + M+ P  + +
Sbjct  168  ADRMFDLGFIKDIRFLLRRMPE----RGTRQTLLFSATL-SHRVLELAYEHMNEPEKLVV  222

Query  432  KGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
            + E      V   +   + +                                        
Sbjct  223  ETESITAARVRQRIYFPSDEE---------------------------------------  243

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
             K    +  +   +  + ++F  TK   + + +   + G         +    L GD   
Sbjct  244  -KQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHG---------YRVGVLSGDVPQ  293

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
             +R+  L RF+KG +  L+ TDVAARG+ I GV YV N  LP + ++YVHRIGR  R   
Sbjct  294  KKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGE  353

Query  612  MGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKED  646
             G AIS            + +   +      +  +
Sbjct  354  EGDAISFACERYAMSLPDIEAYIEQKIPVEPVTSE  388


 Score = 98.3 bits (243),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 45/103 (44%), Gaps = 2/103 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             FS   + P +   +E   +   T IQA ++P+ L GGDV   A+TG+GKT AF + V+ 
Sbjct  10   TFSSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMN  69

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG  105
             +   ++     +K +       +   +  +  +     F   
Sbjct  70   RLL--IRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGAD  110


>sp|Q5GUR8|RHLB_XANOR ATP-dependent RNA helicase RhlB OS=Xanthomonas 
oryzae pv. oryzae (strain KACC10331 / KXO85) OX=291331 
GN=rhlB PE=3 SV=2
Length=574

 Score = 284 bits (726),  Expect = 2e-85, Method: Composition-based stats.
 Identities = 95/395 (24%), Positives = 157/395 (40%), Gaps = 62/395 (16%)

Query  257  ALSKAPDGYIVKSQHSGNAQV----TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKY  312
              ++   G  +    +   ++          P  P+ALI+ P+RELA Q   +  +F   
Sbjct  51   GQAQTGTGKTLAFLVAVMNRLLNRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGA-  109

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVST-GKLNLSQVRFLVLDE  371
              +  LR  L+ GGV    Q  +L+ GVD+++ TPGRL D V     ++L      VLDE
Sbjct  110  --DLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDE  167

Query  372  ADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL  431
            AD +   G+   I  +  ++P+        Q ++ SATL S  V +L+ + M+ P  + +
Sbjct  168  ADRMFDLGFIKDIRFLLRRMPE----RGTRQTLLFSATL-SHRVLELAYEHMNEPEKLVV  222

Query  432  KGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
            + E      V   +   +                                          
Sbjct  223  ETETITAARVRQRIYFPSDDE---------------------------------------  243

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
             K    +  +   +  + ++F  TK   + + +   + G         +    L GD   
Sbjct  244  -KQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHG---------YRVGVLSGDVPQ  293

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
             +R+  L RF+KG +  L+ TDVAARG+ I GV YV N  LP + ++YVHRIGR  R   
Sbjct  294  KKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGE  353

Query  612  MGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKED  646
             G AIS            + +   +      +  +
Sbjct  354  EGDAISFACERYAMSLPDIEAYIEQKIPVEPVTSE  388


 Score = 98.3 bits (243),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 43/103 (42%), Gaps = 2/103 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             FS   + P +   +E   +   T IQA ++P+ L GGDV   A+TG+GKT AF + V+ 
Sbjct  10   TFSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMN  69

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG  105
             +          +K +       +   +  +  +     F   
Sbjct  70   RLLNRPALAD--RKPEDPRALILAPTRELAIQIHKDAVKFGAD  110


>sp|P23394|PRP28_YEAST Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Saccharomyces cerevisiae (strain ATCC 204508 
/ S288c) OX=559292 GN=PRP28 PE=1 SV=2
Length=588

 Score = 284 bits (727),  Expect = 2e-85, Method: Composition-based stats.
 Identities = 100/423 (24%), Positives = 171/423 (40%), Gaps = 60/423 (14%)

Query  251  PKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP------NAPKALIVEPSRELAEQTLN  304
                F+ ++    G  +        +++++   P      + PKALI+ P+REL +Q   
Sbjct  213  QYRDFLGVASTGSGKTLAFVIPILIKMSRSPPRPPSLKIIDGPKALILAPTRELVQQIQK  272

Query  305  NIKQFKKYID---NPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNL  361
              ++  K      N   + + I+GG +  +    L  G DI+V TPGRL D +    L +
Sbjct  273  ETQKVTKIWSKESNYDCKVISIVGGHSLEEISFSLSEGCDILVATPGRLIDSLENHLLVM  332

Query  362  SQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEK  421
             QV  LVLDEAD ++  G+ D +  +  ++          Q ++ +AT+    ++K++  
Sbjct  333  KQVETLVLDEADKMIDLGFEDQVTNILTKVDINADSAVNRQTLMFTATMTPV-IEKIAAG  391

Query  422  IMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANS  481
             M  P +  +  E      +  VV   +   D+                           
Sbjct  392  YMQKPVYATIGVETGSEPLIQQVVEYADNDEDKF--------------------------  425

Query  482  PEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFS  541
                            ++ I        IIF   K   D L + F        +K     
Sbjct  426  --------------KKLKPIVAKYDPPIIIFINYKQTADWLAEKF--------QKETNMK  463

Query  542  CVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH  601
               LHG +   +R+ +L+ F+   V+ +I T+VAARG+DI  V  V+N  +  +  +Y+H
Sbjct  464  VTILHGSKSQEQREHSLQLFRTNKVQIMIATNVAARGLDIPNVSLVVNFQISKKMDDYIH  523

Query  602  RIGRVGRAERMGLAISLVA-TEKEKVWYHVCS-SRGKGCYNTRLKEDGGCTIWYNEMQLL  659
            RIGR GRA   G A+S V+  E E +   +    R     N+ +  +     +    QL 
Sbjct  524  RIGRTGRAANEGTAVSFVSAAEDESLIRELYKYVRKHDPLNSNIFSEAVKNKYNVGKQLS  583

Query  660  SEI  662
            +EI
Sbjct  584  NEI  586


 Score = 80.9 bits (198),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 42/109 (39%), Gaps = 5/109 (5%)

Query  1    MAAFSEMGVMPE-IAQAV-EEMDWLLPTDIQAESIPLIL---GGGDVLMAAETGSGKTGA  55
            +  + E+ ++P  + + + +E+ +  PT IQ  +IP +       D L  A TGSGKT A
Sbjct  171  LRNWEELNIIPRDLLRVIIQELRFPSPTPIQRITIPNVCNMKQYRDFLGVASTGSGKTLA  230

Query  56   FSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            F IP++  +  +       K          +   +              
Sbjct  231  FVIPILIKMSRSPPRPPSLKIIDGPKALILAPTRELVQQIQKETQKVTK  279


>sp|Q5ANB2|DBP10_CANAL ATP-dependent RNA helicase DBP10 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP10 
PE=3 SV=1
Length=908

 Score = 292 bits (747),  Expect = 2e-85, Method: Composition-based stats.
 Identities = 104/457 (23%), Positives = 175/457 (38%), Gaps = 45/457 (10%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
                GL   I  ++  +       ++   +                 V +++   G    
Sbjct  101  FASFGLTKFILANIAKKGYKQPTPIQRKTIPL--------IMEGRDVVGMARTGSGKTAA  152

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
                   ++   +  P   +A+I+ PSRELA QT   +K+F        L+ +++IGG +
Sbjct  153  FVLPLIERLKSRQ--PGGVRAVILSPSRELALQTYKQVKEFSH---GTNLQSIVLIGGDS  207

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
              +  S +    DI+V TPGR   L    + +L  V+++V DEAD L   G+++ +N + 
Sbjct  208  LEEDFSKMMTKPDIIVCTPGRFLHLKVEMQYDLMTVQYIVFDEADRLFEMGFAEQLNELL  267

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH--HVVV  446
              +P         Q ++ SATL    V   ++  +  P  V L  E  + D +   +   
Sbjct  268  ASLP------SNRQSLLFSATLPRSLV-DFAKAGLTNPVLVRLDAESKISDQLQMAYFTT  320

Query  447  PVNPKTDRLW--------------ERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKIL  492
              N +   L               E++ K           D+     +      +     
Sbjct  321  KKNEREANLLYILQEVIKMPLGSEEQIKKLKDMDKRKIDSDSEDDDDDEERKKGKKRYKF  380

Query  493  KGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPH  552
            K E    A +       I+F  TK   + + +     G         +    ++G    H
Sbjct  381  KKERLPPANRLPSPHSTIVFVPTKHHVEYVTKLLRDAG---------YLVSYIYGTLDQH  431

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM  612
             RK  L +F+ G    L+ TDVAARGIDI  +  VIN TLP   + ++HR+GR  RA   
Sbjct  432  ARKNQLYQFRVGLTNVLVVTDVAARGIDIPVLANVINFTLPASSKIFIHRVGRTARAGNK  491

Query  613  GLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGC  649
            G A S+V  ++      +    GK    T + E    
Sbjct  492  GWAYSIVNEKELPYLLDLELFLGKKILLTSMHEAKVE  528


 Score = 110 bits (276),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 8/105 (8%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F+  G+   I   + +  +  PT IQ ++IPLI+ G DV+  A TGSGKT AF +P+I 
Sbjct  100  SFASFGLTKFILANIAKKGYKQPTPIQRKTIPLIMEGRDVVGMARTGSGKTAAFVLPLI-  158

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
               E LK +Q G           S   +  +  Y +   F+ G++
Sbjct  159  ---ERLKSRQPG----GVRAVILSPSRELALQTYKQVKEFSHGTN  196


>sp|A7TK55|IF4A_VANPO ATP-dependent RNA helicase eIF4A OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 
21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=TIF1 PE=3 SV=1
Length=396

 Score = 278 bits (711),  Expect = 2e-85, Method: Composition-based stats.
 Identities = 109/428 (25%), Positives = 181/428 (42%), Gaps = 76/428 (18%)

Query  228  FPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQ--------V  277
            F    LK+  LK  + +G EE     +   + +    +  ++    SG  +        +
Sbjct  25   FDDMNLKDELLKGVYGYGFEEPSAIQQRAILPI--VEEHDVLAQAQSGTGKTGTFSIAAL  82

Query  278  TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE  337
             +      AP+ALI+ P+RELA Q    +     ++D   ++    IGG +  +    L+
Sbjct  83   QRIDSSIKAPQALILAPTRELALQIQKVVIALAFHMD---VKVHACIGGTSFVEDTEGLK  139

Query  338  NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD  397
            +   IVVGTPGR+ D +   +     ++  +LDEAD +LS G+ + I ++   +P  T  
Sbjct  140  D-AQIVVGTPGRVSDNIQRHRFKTDNIKMFILDEADEMLSSGFREQIYQIFTMLPPTT--  196

Query  398  GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWE  457
                QV++ SATL   DV +++ K M  P  + +K ++   + +    + V  +      
Sbjct  197  ----QVVLLSATLP-GDVLEVTTKFMRNPIRILVKKDELTLEGIKQFYINVEEEQ-----  246

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
                                               K +          + QA+IFC T+ 
Sbjct  247  ----------------------------------YKFDCLSDLYDSISVTQAVIFCNTRR  272

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
              + L Q   +           F+   ++ D    ER   ++ F+ G  R LI TD+ AR
Sbjct  273  KVEELTQKLTE---------SNFTVSSIYSDLPQQERDVIMKEFRSGSSRILISTDLLAR  323

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
            GID+  V  VIN  LP  K+NY+HRIGR GR  R G+AI+ V  E       +       
Sbjct  324  GIDVQQVSLVINYDLPTNKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMREIEK-----  378

Query  638  CYNTRLKE  645
             Y+T+++E
Sbjct  379  FYSTQIEE  386


 Score = 91.0 bits (224),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 1/129 (1%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +M +  E+ + V    +  P+ IQ  +I  I+   DVL  A++G+GKTG FSI  +Q 
Sbjct  25   FDDMNLKDELLKGVYGYGFEEPSAIQQRAILPIVEEHDVLAQAQSGTGKTGTFSIAALQR  84

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA-IGSDGLCCQSREVKEWHGC  122
            +  ++K  Q      T             +  +      A IG       +  +K+    
Sbjct  85   IDSSIKAPQALILAPTRELALQIQKVVIALAFHMDVKVHACIGGTSFVEDTEGLKDAQIV  144

Query  123  RATKGLMKG  131
              T G +  
Sbjct  145  VGTPGRVSD  153


>sp|Q25225|IF4A_LEIBR Probable eukaryotic initiation factor 4A 
OS=Leishmania braziliensis OX=5660 GN=LbrM01_V2.0740 PE=3 SV=2
Length=403

 Score = 278 bits (711),  Expect = 2e-85, Method: Composition-based stats.
 Identities = 112/444 (25%), Positives = 194/444 (44%), Gaps = 69/444 (16%)

Query  210  KDLGLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIV  267
            +D     +  P ++    F    L    L+  +++G E+     +      ++  D    
Sbjct  10   QDQDSFLDDQPGVRPIPSFDDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQ  69

Query  268  KSQHSGNA------QVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLREL  321
                +G         + +  F  N  + L++ P+RELA QT   I +  +++ N      
Sbjct  70   AQSGTGKTGAFSIGLLQRLDFRHNLIQGLVLSPTRELALQTAEVISRIGEFLSNSAKFCE  129

Query  322  LIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYS  381
              +GG   +D L  L+ GV + VGTPGR+ D++  G L    +R LVLDEAD +LSQG++
Sbjct  130  TFVGGTRVQDDLRKLQAGVVVAVGTPGRVSDVIKRGALRTESLRVLVLDEADEMLSQGFA  189

Query  382  DFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV  441
            D I  +   +P      K +QV + SAT+   +V +L++K M  P  + +K E    + +
Sbjct  190  DQIYEIFRFLP------KDIQVALFSATMP-EEVLELTKKFMRDPVRILVKRESLTLEGI  242

Query  442  HHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI  501
                + V  +                                         K +  +   
Sbjct  243  KQFFIAVEEEH----------------------------------------KLDTLMDLY  262

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
            +   + Q++IF  T+   D + +   Q            +   +H +    +R++ +  F
Sbjct  263  ETVSIAQSVIFANTRRKVDWIAEKLNQ---------SNHTVSSMHAEMPKSDRERVMNTF  313

Query  562  KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT  621
            + G  R L+ TD+ ARGID+H V  VIN  LP  K+NY+HRIGR GR  R G+AI+ V  
Sbjct  314  RSGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFVTE  373

Query  622  EKEKVWYHVCSSRGKGCYNTRLKE  645
            +  ++ + +     +G Y+T++ E
Sbjct  374  KDVELLHEI-----EGHYHTQIDE  392


 Score = 87.5 bits (215),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 44/103 (43%), Gaps = 9/103 (9%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F +M +   + + +    +  P+ IQ  +I     GGD++  A++G+GKTGAFSI +
Sbjct  25   IPSFDDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGL  84

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
            +Q +       Q             S   +  +   +  S   
Sbjct  85   LQRLDFRHNLIQ---------GLVLSPTRELALQTAEVISRIG  118


>sp|A5AA68|DBP8_ASPNC ATP-dependent RNA helicase dbp8 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=dbp8 PE=3 SV=1
Length=522

 Score = 282 bits (721),  Expect = 3e-85, Method: Composition-based stats.
 Identities = 108/496 (22%), Positives = 179/496 (36%), Gaps = 82/496 (17%)

Query  196  LDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGF  255
            + ++     F+     L +A  +   +   A+     ++ A +                 
Sbjct  85   IGLNDAQNSFAS----LNVAPWLIGSLTTMAVRKPTAIQKACIPEILN--------GRDC  132

Query  256  VALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDN  315
            +  S+   G  +         + +    P     L++ P+RELA Q    IK        
Sbjct  133  IGGSRTGSGKTIAFSV---PMLQKWAEDPFGIFGLVLTPTRELALQIYEQIKAISA---P  186

Query  316  PKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN----LSQVRFLVLDE  371
              ++ LLI GG   R Q   L     +V+ TPGRL D ++T   +    L +VR +VLDE
Sbjct  187  QSMKPLLITGGTDMRPQAVALAQRPHVVIATPGRLADHINTSGSDTIRGLKRVRMVVLDE  246

Query  372  ADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFP-----  426
            AD LL+ G+   +  +   +  +    +  Q ++ +ATL   +V+ L  K M  P     
Sbjct  247  ADRLLAPGHGSMLPDVETCLSALPPSSE-RQTLLFTATLTP-EVRAL--KSMPRPSTKPP  302

Query  427  ---TWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPE  483
               T +  +   S+P T+    + V                                   
Sbjct  303  IFVTEISTENNASIPPTLKQTYLKVP----------------------------------  328

Query  484  MWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCV  543
                        + + + + +    AIIFC      D LE+   +               
Sbjct  329  ----MTHREAFLHVLLSTEANASKPAIIFCNHTKTADLLERMLRRL---------SHRVT  375

Query  544  CLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI  603
             LH      ER  NL RF+    R L+ TDVA+RG+DI  V  V+N  +P    +YVHR+
Sbjct  376  SLHSLLPQSERNANLARFRASAARLLVATDVASRGLDIPSVELVVNFDVPRNPDDYVHRV  435

Query  604  GRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIE  663
            GR  RA R G +++LV      +   +    G+       +E            +L E+ 
Sbjct  436  GRTARAGRKGESVTLVGQRDVSLVLAIEERVGRQMEEWS-EEGVSVEGRVVRTGVLKEVG  494

Query  664  EHLNCTISQVEPDIKV  679
            E       ++E    V
Sbjct  495  EAKREAAGEIEEGRDV  510


 Score = 99.0 bits (245),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 62/156 (40%), Gaps = 20/156 (13%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F+ + V P +  ++  M    PT IQ   IP IL G D +  + TGSGKT AFS+P++Q
Sbjct  93   SFASLNVAPWLIGSLTTMAVRKPTAIQKACIPEILNGRDCIGGSRTGSGKTIAFSVPMLQ  152

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI----------GSDGLCCQ  112
               E                   +   +  +  Y++  A +           G   +  Q
Sbjct  153  KWAE---------DPFGIFGLVLTPTRELALQIYEQIKAISAPQSMKPLLITGGTDMRPQ  203

Query  113  SREV-KEWHGCRATKGLMKGKHYYEVSCHDQGLCRV  147
            +  + +  H   AT G +        S   +GL RV
Sbjct  204  AVALAQRPHVVIATPGRLADHINTSGSDTIRGLKRV  239


>sp|P10081|IF4A_YEAST ATP-dependent RNA helicase eIF4A OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 
GN=TIF1 PE=1 SV=3
Length=395

 Score = 278 bits (711),  Expect = 3e-85, Method: Composition-based stats.
 Identities = 108/426 (25%), Positives = 179/426 (42%), Gaps = 72/426 (17%)

Query  228  FPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN------AQVTQ  279
            F    L    L+  F +G EE     +   + + +  D        +G       A + +
Sbjct  24   FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR  83

Query  280  TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
                  AP+AL++ P+RELA Q    +     ++D   ++    IGG +  +    L + 
Sbjct  84   IDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD---IKVHACIGGTSFVEDAEGLRD-  139

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
              IVVGTPGR+ D +   +    +++  +LDEAD +LS G+ + I ++   +P  T    
Sbjct  140  AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT----  195

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              QV++ SAT+ + DV +++ K M  P  + +K ++   + +    V V  +        
Sbjct  196  --QVVLLSATMPN-DVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEE-------  245

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
                                             K E          + QA+IFC T+   
Sbjct  246  --------------------------------YKYECLTDLYDSISVTQAVIFCNTRRKV  273

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            + L             +  +F+   ++ D    ER   ++ F+ G  R LI TD+ ARGI
Sbjct  274  EELTTKL---------RNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGI  324

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCY  639
            D+  V  VIN  LP  K+NY+HRIGR GR  R G+AI+ V  E       +        Y
Sbjct  325  DVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEK-----FY  379

Query  640  NTRLKE  645
            +T+++E
Sbjct  380  STQIEE  385


 Score = 89.4 bits (220),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 13/124 (10%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +M +   + + V    +  P+ IQ  +I  I+ G DVL  A++G+GKTG FSI  +Q 
Sbjct  24   FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR  83

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA----IGSDGLCCQSREVKEW  119
            +  ++K  Q             +   +  +       A A    I        +  V++ 
Sbjct  84   IDTSVKAPQ---------ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDA  134

Query  120  HGCR  123
             G R
Sbjct  135  EGLR  138


>sp|A6ZQJ1|IF4A_YEAS7 ATP-dependent RNA helicase eIF4A OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=TIF1 PE=3 
SV=1
Length=395

 Score = 278 bits (711),  Expect = 3e-85, Method: Composition-based stats.
 Identities = 108/426 (25%), Positives = 179/426 (42%), Gaps = 72/426 (17%)

Query  228  FPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN------AQVTQ  279
            F    L    L+  F +G EE     +   + + +  D        +G       A + +
Sbjct  24   FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR  83

Query  280  TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
                  AP+AL++ P+RELA Q    +     ++D   ++    IGG +  +    L + 
Sbjct  84   IDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD---IKVHACIGGTSFVEDAEGLRD-  139

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
              IVVGTPGR+ D +   +    +++  +LDEAD +LS G+ + I ++   +P  T    
Sbjct  140  AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT----  195

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
              QV++ SAT+ + DV +++ K M  P  + +K ++   + +    V V  +        
Sbjct  196  --QVVLLSATMPN-DVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEE-------  245

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
                                             K E          + QA+IFC T+   
Sbjct  246  --------------------------------YKYECLTDLYDSISVTQAVIFCNTRRKV  273

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            + L             +  +F+   ++ D    ER   ++ F+ G  R LI TD+ ARGI
Sbjct  274  EELTTKL---------RNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGI  324

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCY  639
            D+  V  VIN  LP  K+NY+HRIGR GR  R G+AI+ V  E       +        Y
Sbjct  325  DVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEK-----FY  379

Query  640  NTRLKE  645
            +T+++E
Sbjct  380  STQIEE  385


 Score = 89.4 bits (220),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 13/124 (10%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +M +   + + V    +  P+ IQ  +I  I+ G DVL  A++G+GKTG FSI  +Q 
Sbjct  24   FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR  83

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA----IGSDGLCCQSREVKEW  119
            +  ++K  Q             +   +  +       A A    I        +  V++ 
Sbjct  84   IDTSVKAPQ---------ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDA  134

Query  120  HGCR  123
             G R
Sbjct  135  EGLR  138


>sp|Q9PA24|RHLB_XYLFA ATP-dependent RNA helicase RhlB OS=Xylella 
fastidiosa (strain 9a5c) OX=160492 GN=rhlB PE=3 SV=2
Length=543

 Score = 283 bits (723),  Expect = 3e-85, Method: Composition-based stats.
 Identities = 103/431 (24%), Positives = 163/431 (38%), Gaps = 70/431 (16%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
             N   L L   +   +          ++   L                    ++   G  
Sbjct  9    LNFSSLDLHPALLTGLTRAGFTLCTPIQALTLPVALA--------GRDIAGQAQTGTGKT  60

Query  267  VKSQHSGNAQVTQTKFL----PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
            +        ++     L    P  P+ALI+ P+RELA Q  N+  +F     N  LR  L
Sbjct  61   LAFLVVVVNRLLSRPGLVNRNPEDPRALILAPTRELAIQIYNDAVKFG---GNLGLRFAL  117

Query  323  IIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGK-LNLSQVRFLVLDEADGLLSQGYS  381
            I GGV    Q  +L  G D+V+ TPGRL D +   + ++L      VLDEAD +   G+ 
Sbjct  118  IYGGVDYDKQREMLRKGADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFI  177

Query  382  DFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV  441
              I  +  ++P+  S     Q ++ SATL S  V +L+ + M+ P  +  + E      V
Sbjct  178  KDIRFILRRLPERCS----RQTLLFSATL-SHRVLELAYEYMNEPEKLVAETETVTTTRV  232

Query  442  HHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI  501
               +     +                                         K    +  +
Sbjct  233  RQRIYFPAEEE----------------------------------------KIPLLLGLL  252

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
               +  + ++F  TK+  + + +   + G         +    L GD    +R+  L RF
Sbjct  253  SRSEGMRTMVFVNTKVFVEGVARALDEAG---------YRVGVLSGDVPQRKRETLLNRF  303

Query  562  KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT  621
            +KG +  L+ TDVAARG+ I GV YV N  LP + ++YVHRIGR  R    G AIS    
Sbjct  304  QKGQLEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISFACE  363

Query  622  EKEKVWYHVCS  632
                    + +
Sbjct  364  RYAMSLPDIEA  374


 Score = 99.0 bits (245),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 59/155 (38%), Gaps = 14/155 (9%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS + + P +   +    + L T IQA ++P+ L G D+   A+TG+GKT AF + V+  
Sbjct  11   FSSLDLHPALLTGLTRAGFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVVNR  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDR--------GSAFAIGSDGLCCQSRE  115
            +           +    +    +   +  +  Y+         G  FA+   G+    + 
Sbjct  71   LLSRPGLVNRNPEDPRAL--ILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDKQR  128

Query  116  ---VKEWHGCRATKGLMKGKHYYEVSCHDQGLCRV  147
                K      AT G +   +  +       +C +
Sbjct  129  EMLRKGADVVIATPGRLID-YLKQHEVVSLRVCEI  162


>sp|O62591|IF4A_LEIMA Probable eukaryotic initiation factor 4A 
OS=Leishmania major OX=5664 GN=LmjF.01.0770 PE=3 SV=1
Length=403

 Score = 278 bits (711),  Expect = 3e-85, Method: Composition-based stats.
 Identities = 111/444 (25%), Positives = 193/444 (43%), Gaps = 69/444 (16%)

Query  210  KDLGLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIV  267
            +D     +  P ++    F    L    L+  +++G E+     +      ++  D    
Sbjct  10   QDQDSFLDDQPGVRPIPSFDDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQ  69

Query  268  KSQHSGNA------QVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLREL  321
                +G         + +  F  N  + L++ P+RELA QT   I +  +++ N      
Sbjct  70   AQSGTGKTGAFSIGLLQRLDFRHNLIQGLVLSPTRELALQTAEVISRIGEFLSNSSKFCE  129

Query  322  LIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYS  381
              +GG   +D L  L+ GV + VGTPGR+ D++  G L    +R LVLDEAD +LSQG++
Sbjct  130  TFVGGTRVQDDLRKLQAGVIVAVGTPGRVSDVIKRGALRTESLRVLVLDEADEMLSQGFA  189

Query  382  DFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV  441
            D I  +   +P      K +QV + SAT+   +V +L++K M  P  + +K E    + +
Sbjct  190  DQIYEIFRFLP------KDIQVALFSATMP-EEVLELTKKFMRDPVRILVKRESLTLEGI  242

Query  442  HHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI  501
                + V  +                                         K +  +   
Sbjct  243  KQFFIAVEEEH----------------------------------------KLDTLMDLY  262

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
            +   + Q++IF  T+   D + +   Q            +   +H +    +R++ +  F
Sbjct  263  ETVSIAQSVIFANTRRKVDWIAEKLNQ---------SNHTVSSMHAEMPKSDRERVMNTF  313

Query  562  KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT  621
            + G  R L+ TD+ ARGID+H V  VIN  LP  K+NY+HRIGR GR  R G+AI+ V  
Sbjct  314  RSGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFVTE  373

Query  622  EKEKVWYHVCSSRGKGCYNTRLKE  645
            +  ++ + + +      Y+T++ E
Sbjct  374  KDVELLHEIEAH-----YHTQIDE  392


 Score = 87.5 bits (215),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 44/103 (43%), Gaps = 9/103 (9%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F +M +   + + +    +  P+ IQ  +I     GGD++  A++G+GKTGAFSI +
Sbjct  25   IPSFDDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGL  84

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
            +Q +       Q             S   +  +   +  S   
Sbjct  85   LQRLDFRHNLIQ---------GLVLSPTRELALQTAEVISRIG  118


>sp|A4HRK0|IF4A_LEIIN Probable eukaryotic initiation factor 4A 
OS=Leishmania infantum OX=5671 GN=LinJ01.0780 PE=3 SV=1
Length=403

 Score = 278 bits (711),  Expect = 3e-85, Method: Composition-based stats.
 Identities = 111/444 (25%), Positives = 193/444 (43%), Gaps = 69/444 (16%)

Query  210  KDLGLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIV  267
            +D     +  P ++    F    L    L+  +++G E+     +      ++  D    
Sbjct  10   QDQDSFLDDQPGVRPIPSFDDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQ  69

Query  268  KSQHSGNA------QVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLREL  321
                +G         + +  F  N  + L++ P+RELA QT   I +  +++ N      
Sbjct  70   AQSGTGKTGAFSIGLLQRLDFRHNLIQGLVLSPTRELALQTAEVISRIGEFLSNSSKFCE  129

Query  322  LIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYS  381
              +GG   +D L  L+ GV + VGTPGR+ D++  G L    +R LVLDEAD +LSQG++
Sbjct  130  TFVGGTRVQDDLRKLQAGVIVAVGTPGRVSDVIKRGALRTESLRVLVLDEADEMLSQGFA  189

Query  382  DFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV  441
            D I  +   +P      K +QV + SAT+   +V +L++K M  P  + +K E    + +
Sbjct  190  DQIYEIFRFLP------KDIQVALFSATMP-EEVLELTKKFMRDPVRILVKRESLTLEGI  242

Query  442  HHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI  501
                + V  +                                         K +  +   
Sbjct  243  KQFFIAVEEEH----------------------------------------KLDTLMDLY  262

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
            +   + Q++IF  T+   D + +   Q            +   +H +    +R++ +  F
Sbjct  263  ETVSIAQSVIFANTRRKVDWIAEKLNQ---------SNHTVSSMHAEMPKSDRERVMNTF  313

Query  562  KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT  621
            + G  R L+ TD+ ARGID+H V  VIN  LP  K+NY+HRIGR GR  R G+AI+ V  
Sbjct  314  RSGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFVTE  373

Query  622  EKEKVWYHVCSSRGKGCYNTRLKE  645
            +  ++ + + +      Y+T++ E
Sbjct  374  KDVELLHEIEAH-----YHTQIDE  392


 Score = 87.5 bits (215),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 44/103 (43%), Gaps = 9/103 (9%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F +M +   + + +    +  P+ IQ  +I     GGD++  A++G+GKTGAFSI +
Sbjct  25   IPSFDDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGL  84

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
            +Q +       Q             S   +  +   +  S   
Sbjct  85   LQRLDFRHNLIQ---------GLVLSPTRELALQTAEVISRIG  118


>sp|Q9HGM5|DBP8_SCHPO ATP-dependent RNA helicase dbp8 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp8 
PE=3 SV=1
Length=453

 Score = 280 bits (715),  Expect = 3e-85, Method: Composition-based stats.
 Identities = 111/505 (22%), Positives = 194/505 (38%), Gaps = 81/505 (16%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K+  DLG++  +   +K  A++    ++   +                 +  +K   G  
Sbjct  7    KSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQIL--------EGRNCIGGAKTGSGKT  58

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
                     + ++    P+   ALI+ P+RELA Q     +QF     N  L+  LI+GG
Sbjct  59   AAFALPIIEKWSKD---PSGIFALILTPTRELAIQID---EQFAALGANLNLKHALIVGG  112

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGK----LNLSQVRFLVLDEADGLLSQGYSD  382
            +    Q   L     +VV TPGRL DL+ +        L +++FLV+DEAD LLS  ++D
Sbjct  113  MDMIRQSIDLSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFAD  172

Query  383  FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF---PTWVDLKGED--SV  437
             ++   + +P      +  Q ++ +AT+    +++L  +       P W+     D  SV
Sbjct  173  DLDDCFSVLPA----SEDRQTLLFTATVTDA-IRQLKYQPQKNNKPPLWLYEVETDNISV  227

Query  438  PDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYA  497
            P T+    + V+ +    +                                         
Sbjct  228  PSTLQQSYIFVSSQVREAY--------------------------------------LVH  249

Query  498  VRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQN  557
            +  I E+    AIIF       + +                +     LH +    ER  +
Sbjct  250  LLTIPENAKKSAIIFVNRTRTAELIYSILRLL---------ELRVTELHSEMVQRERINS  300

Query  558  LERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAIS  617
            L RF+    + L+ TDVA+RG+DI  V  VIN  LP +  +Y+HR+GR  RA R G +IS
Sbjct  301  LGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESIS  360

Query  618  LVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEM-----QLLSEIEEHLNCTISQ  672
            +V      + + +    G          +     +  E+     Q   E+ +       Q
Sbjct  361  IVTERDVDLVHAIEDRVGTKLSEYEHVSENKMLEYIKEVTDAKRQASLEMIDRGFGERRQ  420

Query  673  VEPDIKVPVDEFDGKVT-YGQKRAA  696
               + ++  +    K+   G+K+ A
Sbjct  421  KRNEKRLMANGISNKLKNSGRKKKA  445


 Score = 98.7 bits (244),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 60/157 (38%), Gaps = 20/157 (13%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +FS++G+ P +   ++ +    PTDIQ   I  IL G + +  A+TGSGKT AF++P+I
Sbjct  7    KSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPII  66

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG---SDGLCCQSREV--  116
            +            K          +   +  +   ++ +A          L     ++  
Sbjct  67   EKW---------SKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIR  117

Query  117  ------KEWHGCRATKGLMKGKHYYEVSCHDQGLCRV  147
                  K  H   AT G +             GL R+
Sbjct  118  QSIDLSKRPHVVVATPGRLADLIRSNGEETIAGLRRI  154


>sp|A5DLE0|DBP8_PICGU ATP-dependent RNA helicase DBP8 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP8 PE=3 
SV=2
Length=433

 Score = 279 bits (713),  Expect = 3e-85, Method: Composition-based stats.
 Identities = 103/492 (21%), Positives = 190/492 (39%), Gaps = 68/492 (14%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             KDLG++  +   +    +     ++   +               G   +  A  G   K
Sbjct  3    FKDLGVSKWLLEALAAMKIRSPTSIQAECIP----------QILAGRDCIGGAKTG-SGK  51

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
            +       +T+    P     L++ P+RELA Q     +QF     +  ++  +++GG  
Sbjct  52   TIAFAAPMMTKWSEDPFGIYGLVLTPTRELALQI---AEQFLALGASMNIKVAVVVGGED  108

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN----LSQVRFLVLDEADGLLSQGYSDFI  384
               Q   ++     ++ TPGRL D +     +    L +++FLVLDEAD LLS  +   +
Sbjct  109  MVKQALEIQKSPHFIIATPGRLADHILNSGDDTVGGLKRIKFLVLDEADRLLSNSFGSDL  168

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
             R    +P    D  + Q ++ +AT+    V+ L +K    P       E   P  +H +
Sbjct  169  ERCFKILP----DASKRQTLLFTATVTDA-VRALKDK----PV-----PEGKKPVFIHEI  214

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
            V   +     +   L  S++       +        SP                    ++
Sbjct  215  V---SKDQVAIPATLTISYVFVPSYVKEAYLHNILVSP--------------------KY  251

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
            +   AI+F       + L +   +                LH +    ER  +L RF+ G
Sbjct  252  EKASAIVFVNRTYTAEILRRTLRKL---------DIRVASLHSEMPQSERTNSLHRFRAG  302

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
              R LI TDVA+RG+DI  V  V+N  +P +  +Y+HR+GR  RA + G ++S+V+ +  
Sbjct  303  AARVLIATDVASRGLDIPNVELVVNQDIPADPDDYIHRVGRTARAGKKGGSVSIVSEKDV  362

Query  625  KVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS--EIEEHLNCTISQVEPDIKVPVD  682
            +    + +   K      L+E     I    + +++  + E   +          K+   
Sbjct  363  ERILAIENHINKKMDL--LEEVNDDKIIKESLSIVTAAKRESVADMEKEGFGEKRKINKR  420

Query  683  EFDGKVTYGQKR  694
            + + +    +KR
Sbjct  421  KREERTRDSKKR  432


 Score = 103 bits (257),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 69/182 (38%), Gaps = 24/182 (13%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F ++GV   + +A+  M    PT IQAE IP IL G D +  A+TGSGKT AF+ P++ 
Sbjct  2    SFKDLGVSKWLLEALAAMKIRSPTSIQAECIPQILAGRDCIGGAKTGSGKTIAFAAPMMT  61

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA----------IGSDGLCCQ  112
               E                   +   +  +   ++  A            +G + +  Q
Sbjct  62   KWSE---------DPFGIYGLVLTPTRELALQIAEQFLALGASMNIKVAVVVGGEDMVKQ  112

Query  113  SREV-KEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGW-STMQASLDLGTDKFGFGFGGT  170
            + E+ K  H   AT G +             GL R+ +    +A   L      FG    
Sbjct  113  ALEIQKSPHFIIATPGRLADHILNSGDDTVGGLKRIKFLVLDEADRLL---SNSFGSDLE  169

Query  171  GK  172
              
Sbjct  170  RC  171


>sp|P20449|DBP5_YEAST ATP-dependent RNA helicase DBP5 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP5 
PE=1 SV=2
Length=482

 Score = 280 bits (717),  Expect = 3e-85, Method: Composition-based stats.
 Identities = 108/470 (23%), Positives = 187/470 (40%), Gaps = 78/470 (17%)

Query  199  DKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVAL  258
                +  +K+  +LGLA E+   +          ++   L                 +A 
Sbjct  84   PNSPLYSAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPP------RNMIAQ  137

Query  259  SKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKL  318
            S++  G       +    +T+      +P+A+ + PSRELA QTL  +++  K+    K+
Sbjct  138  SQSGTGKTAAFSLT---MLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKF---TKI  191

Query  319  RELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLS-  377
               LI+     +++    +    ++VGTPG + DL+    + L +++  VLDEAD +L  
Sbjct  192  TSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQ  247

Query  378  QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSV  437
            QG  D   R+   +P      K  Q+++ SAT     V++ ++KI+     ++L+  +  
Sbjct  248  QGLGDQCIRVKRFLP------KDTQLVLFSATFADA-VRQYAKKIVPNANTLELQTNEVN  300

Query  438  PDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYA  497
             D +  + +    + D+                                    +L   Y 
Sbjct  301  VDAIKQLYMDCKNEADKF----------------------------------DVLTELYG  326

Query  498  VRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQN  557
            +  I       +IIF  TK   + L      +G              LHGD +  ER + 
Sbjct  327  LMTI-----GSSIIFVATKKTANVLYGKLKSEG---------HEVSILHGDLQTQERDRL  372

Query  558  LERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD------EKQNYVHRIGRVGRAER  611
            ++ F++G  + LI T+V ARGIDI  V  V+N  LP       +   Y+HRIGR GR  R
Sbjct  373  IDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGR  432

Query  612  MGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE  661
             G+AIS V  +                  TR+  D    +     ++L +
Sbjct  433  KGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDDWDEVEKIVKKVLKD  482


 Score = 85.2 bits (209),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 21/73 (29%), Positives = 42/73 (58%), Gaps = 2/73 (3%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSIP  59
             +F E+G+ PE+ + +  M +  P+ IQ  ++PL+L     +++  +++G+GKT AFS+ 
Sbjct  92   KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLT  151

Query  60   VIQIVYETLKDQQ  72
            ++  V       Q
Sbjct  152  MLTRVNPEDASPQ  164


>sp|A6ZNQ1|DBP5_YEAS7 ATP-dependent RNA helicase DBP5 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DBP5 PE=3 SV=1
Length=482

 Score = 280 bits (717),  Expect = 3e-85, Method: Composition-based stats.
 Identities = 108/470 (23%), Positives = 187/470 (40%), Gaps = 78/470 (17%)

Query  199  DKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVAL  258
                +  +K+  +LGLA E+   +          ++   L                 +A 
Sbjct  84   PNSPLYSAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPP------RNMIAQ  137

Query  259  SKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKL  318
            S++  G       +    +T+      +P+A+ + PSRELA QTL  +++  K+    K+
Sbjct  138  SQSGTGKTAAFSLT---MLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKF---TKI  191

Query  319  RELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLS-  377
               LI+     +++    +    ++VGTPG + DL+    + L +++  VLDEAD +L  
Sbjct  192  TSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQ  247

Query  378  QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSV  437
            QG  D   R+   +P      K  Q+++ SAT     V++ ++KI+     ++L+  +  
Sbjct  248  QGLGDQCIRVKRFLP------KDTQLVLFSATFADA-VRQYAKKIVPNANTLELQTNEVN  300

Query  438  PDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYA  497
             D +  + +    + D+                                    +L   Y 
Sbjct  301  VDAIKQLYMDCKNEADKF----------------------------------DVLTELYG  326

Query  498  VRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQN  557
            +  I       +IIF  TK   + L      +G              LHGD +  ER + 
Sbjct  327  LMTI-----GSSIIFVATKKTANVLYGKLKSEG---------HEVSILHGDLQTQERDRL  372

Query  558  LERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD------EKQNYVHRIGRVGRAER  611
            ++ F++G  + LI T+V ARGIDI  V  V+N  LP       +   Y+HRIGR GR  R
Sbjct  373  IDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGR  432

Query  612  MGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE  661
             G+AIS V  +                  TR+  D    +     ++L +
Sbjct  433  KGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDDWDEVEKIVKKVLKD  482


 Score = 85.2 bits (209),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 21/73 (29%), Positives = 42/73 (58%), Gaps = 2/73 (3%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSIP  59
             +F E+G+ PE+ + +  M +  P+ IQ  ++PL+L     +++  +++G+GKT AFS+ 
Sbjct  92   KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLT  151

Query  60   VIQIVYETLKDQQ  72
            ++  V       Q
Sbjct  152  MLTRVNPEDASPQ  164


>sp|Q9V3C0|DDX41_DROME ATP-dependent RNA helicase abstrakt OS=Drosophila 
melanogaster OX=7227 GN=abs PE=1 SV=1
Length=619

 Score = 285 bits (728),  Expect = 4e-85, Method: Composition-based stats.
 Identities = 93/360 (26%), Positives = 159/360 (44%), Gaps = 61/360 (17%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKY---IDNPKLRELLIIGGVAARDQLSVLENGVDI  342
             P  LI+ PSRELA+QT   I+ + K+      P++R  L +GG+   + L V+  GV I
Sbjct  253  GPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVSEALDVISRGVHI  312

Query  343  VVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            VV TPGRL D++    L L   R+L +DEAD ++  G+ + +  + +          + Q
Sbjct  313  VVATPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMGFEEDVRTIFSFF------KGQRQ  366

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
             ++ SAT+    ++  +   +  P  +++    +    V   V  V  +           
Sbjct  367  TLLFSATMPK-KIQNFARSALVKPVTINVGRAGAASMNVTQQVEYVKQEA----------  415

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
                                          K  Y +  +++      +IF   K D D +
Sbjct  416  ------------------------------KVVYLLDCLQKTAP-PVLIFAEKKQDVDCI  444

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
             +Y + +G            V +HG +   ER + ++ ++ G    L+ TDVA++G+D  
Sbjct  445  HEYLLLKG---------VEAVAIHGGKDQEERSRAVDAYRVGKKDVLVATDVASKGLDFP  495

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA-TEKEKVWYHVCSSRGKGCYNT  641
             V +VIN  +PD+ +NYVHRIGR GR+   GLA +L+  T ++ V   +     +G    
Sbjct  496  NVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATTLINKTTEQSVLLDLKHLLIEGKQEV  555


 Score = 95.6 bits (236),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 24/110 (22%), Positives = 41/110 (37%), Gaps = 1/110 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F EM     I   +       PT IQ + +P +L G D++  A TGSGKT  F +PV
Sbjct  176  IRSFREMKFPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPV  235

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLC  110
            I    E        ++ +           +     ++    ++       
Sbjct  236  IMFALEQEYSL-PFERNEGPYGLIICPSRELAKQTHEIIQHYSKHLQACG  284


>sp|Q4WXW1|DBP8_ASPFU ATP-dependent RNA helicase dbp8 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=dbp8 PE=3 SV=1
Length=526

 Score = 282 bits (721),  Expect = 4e-85, Method: Composition-based stats.
 Identities = 104/478 (22%), Positives = 178/478 (37%), Gaps = 74/478 (15%)

Query  212  LGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQH  271
            L +A  +   +   A+     ++ A +         +       +  S+   G  +    
Sbjct  101  LNVAPWLVGSLTTMAVRKPTAIQKACIP--------EILKGRDCIGGSRTGSGKTIAFSV  152

Query  272  SGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARD  331
                 + +    P     +++ P+RELA Q    IK          ++ +LI GG   R 
Sbjct  153  ---PMLQKWAEDPFGIFGVVLTPTRELALQIFEQIKAISA---PQSMKPVLITGGTDMRP  206

Query  332  QLSVLENGVDIVVGTPGRLDDLVSTGKLN----LSQVRFLVLDEADGLLSQGYSDFINRM  387
            Q   L     +V+ TPGRL D + +   +    L +VR +VLDEAD LL+ G    +  +
Sbjct  207  QAIALAGRPHVVIATPGRLADHIKSSGEDTVCGLKRVRMVVLDEADRLLASGPGSMLPDV  266

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKL------SEKIMHFPTWVDLKGEDSVPDTV  441
               +  +    +  Q ++ +AT+   +V+ L      + K   F T +  + + ++P T+
Sbjct  267  ETCLSALPPSSE-RQTLLFTATVTP-EVRALKNMPRSANKPPVFVTEISTENQGTIPPTL  324

Query  442  HHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI  501
                + V      L  R    H+                                 + + 
Sbjct  325  KQTYLKVP-----LTHREAFLHV---------------------------------LLST  346

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
            + +    AI+FC      D LE+   +                LH      ER  NL RF
Sbjct  347  EGNASKPAIVFCNHTKTADLLERMLRRL---------SHRVTSLHSLLPQSERNANLARF  397

Query  562  KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT  621
            +    R L+ TDVA+RG+DI  V  VIN  +P    +YVHR+GR  RA R G A++LV  
Sbjct  398  RASAARILVATDVASRGLDIPTVSLVINYDVPRNPDDYVHRVGRTARAGRRGEAVTLVGQ  457

Query  622  EKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKV  679
               ++   +    G+       +E             L E+ E     + +++    V
Sbjct  458  RDVQLVLAIEERVGRQMEEWS-EEGVSIEGRLVRTGALKEVGEAKREAMVEIDEGRDV  514


 Score = 98.3 bits (243),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 46/103 (45%), Gaps = 9/103 (9%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            ++F+ + V P +  ++  M    PT IQ   IP IL G D +  + TGSGKT AFS+P++
Sbjct  96   SSFAALNVAPWLVGSLTTMAVRKPTAIQKACIPEILKGRDCIGGSRTGSGKTIAFSVPML  155

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            Q   E                   +   +  +  +++  A + 
Sbjct  156  QKWAE---------DPFGIFGVVLTPTRELALQIFEQIKAISA  189


>sp|Q4I662|DBP8_GIBZE ATP-dependent RNA helicase DBP8 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=DBP8 PE=3 SV=1
Length=547

 Score = 282 bits (722),  Expect = 4e-85, Method: Composition-based stats.
 Identities = 111/463 (24%), Positives = 172/463 (37%), Gaps = 69/463 (15%)

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFL------PNAPKALIVEP  294
            N   +      K     + K  D        SG         L      P A  A+++ P
Sbjct  133  NMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTMAFAVPILQKWSEDPTAIFAVVLTP  192

Query  295  SRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV  354
            +RELA Q     +QFK       L+ +L+ GG   R Q   +     +++ TPGRL D +
Sbjct  193  TRELALQIF---EQFKAISSPQSLKAILVTGGSDMRTQAIEIGKRPHVIIATPGRLADHI  249

Query  355  STGKLN----LSQVRFLVLDEADGLLS-QGYSDFINRMHNQIPQVTSDGKRLQVIVCSAT  409
             T   +    L +VR++VLDEAD LL+  G    +  +   +  +    +  Q ++ +AT
Sbjct  250  RTSGEDTICGLRRVRYVVLDEADRLLNATGPGSMLPDVEECLSVLPPATE-RQTLLFTAT  308

Query  410  LHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDV  469
            +               P    LK     P      V  V+ +T  +   L + +I+    
Sbjct  309  IT--------------PEVRALKDMPIKPGKQPVFVCEVDTQTLAIPATLKQMYIKVPVT  354

Query  470  HAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAII-FCRTKIDCDNLEQYFIQ  528
            H +                            + E  +D+ +I FC      D L      
Sbjct  355  HKEHYLH---------------------TFLLTEANVDKTVILFCNRTSTADYLHHLLRM  393

Query  529  QGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVI  588
                      +     LH      +R  NL RF+    R L+ TDVAARG+DI  V  VI
Sbjct  394  L---------EHRVTSLHSKLPQRQRIDNLARFRASAARILVATDVAARGLDIPEVSLVI  444

Query  589  NVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCY---------  639
            N  LP +  +Y+HR+GR  RA R G A+S V     ++   +    G+            
Sbjct  445  NYDLPRDPDDYIHRVGRTARAGRKGEAVSFVGQRDVELALTIEKRVGRDMEAWEEEGVNL  504

Query  640  NTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVD  682
             TR+  D    +   + + L E+EE       +     K+ VD
Sbjct  505  ETRVVRDALKLVSEKKREALLEVEEGREVGGKRKRTKQKLRVD  547


 Score = 99.8 bits (247),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 58/141 (41%), Gaps = 20/141 (14%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              FS + V P + Q++E M    PT IQ   IP IL G D +  + TGSGKT AF++P++
Sbjct  116  TTFSALDVRPWLVQSLENMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTMAFAVPIL  175

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI----------GSDGLCC  111
            Q   E                   +   +  +  +++  A +           G   +  
Sbjct  176  QKWSE---------DPTAIFAVVLTPTRELALQIFEQFKAISSPQSLKAILVTGGSDMRT  226

Query  112  QSREV-KEWHGCRATKGLMKG  131
            Q+ E+ K  H   AT G +  
Sbjct  227  QAIEIGKRPHVIIATPGRLAD  247


>sp|Q6FQZ0|DBP8_CANGA ATP-dependent RNA helicase DBP8 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP8 PE=3 SV=1
Length=437

 Score = 279 bits (713),  Expect = 4e-85, Method: Composition-based stats.
 Identities = 97/483 (20%), Positives = 177/483 (37%), Gaps = 73/483 (15%)

Query  200  KGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALS  259
               V   +N + LGL+  +   +    +     +++  +         +       +  +
Sbjct  2    TEEVSRKQNFRQLGLSKWLVESLDAMRIRTPTAIQSGCIP--------EILKGRDCIGGA  53

Query  260  KAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLR  319
            K   G  +         +TQ    P     +++ P+RELA Q          Y++   +R
Sbjct  54   KTGSGKTIAF---AGPMLTQWSEDPTGMFGIVLTPTRELAMQIAEQFTALGSYMN---IR  107

Query  320  ELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN----LSQVRFLVLDEADGL  375
              L++GG +  DQ   L+     ++ TPGRL   +     +    L +V++LVLDEAD L
Sbjct  108  VALVVGGESIVDQALQLQRKPHFIIATPGRLAHHILNSGDDTVGGLKRVKYLVLDEADIL  167

Query  376  LSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED  435
            L++ +S+ +      +P      ++ Q ++ +AT+    V+ L +  +            
Sbjct  168  LTETFSNDLKTCVGALP----PKEKRQTLLFTATITDQ-VRALQDAPVQK----------  212

Query  436  SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGE  495
                                    GK  +   +V   DN    +     +    + +K  
Sbjct  213  ------------------------GKQPLFCYEVENVDNVAIPSTLNTEYVLVPEHVKEA  248

Query  496  YAVRAIKEHKM--DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
            Y  + +         AIIF       + L +           K        LH      E
Sbjct  249  YLYQLLTCESYANSTAIIFVNRTTAAEVLRRTL---------KALDVRVASLHSQMPQQE  299

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
            R  ++ RF+    R LI TDVA+RG+DI  V  VIN  +P +   ++HR GR  RA R G
Sbjct  300  RTNSMHRFRANAARVLIATDVASRGLDIPTVELVINYDIPSDPDTFIHRSGRTARAGRKG  359

Query  614  LAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQV  673
             AIS +          + +       N ++ E           + L+++ +     +  +
Sbjct  360  DAISFITQRDVSRIEAIEARI-----NMKMTECDKVHDTAVIRKALTKVSKAKREALMAM  414

Query  674  EPD  676
            E +
Sbjct  415  EKE  417


 Score = 96.4 bits (238),  Expect = 9e-20, Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 9/104 (9%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F ++G+   + ++++ M    PT IQ+  IP IL G D +  A+TGSGKT AF+ P++  
Sbjct  11   FRQLGLSKWLVESLDAMRIRTPTAIQSGCIPEILKGRDCIGGAKTGSGKTIAFAGPMLTQ  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
              E                   +   +  M   ++ +A     +
Sbjct  71   WSE---------DPTGMFGIVLTPTRELAMQIAEQFTALGSYMN  105


>sp|A6ZXP4|SUB2_YEAS7 ATP-dependent RNA helicase SUB2 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=SUB2 PE=3 SV=1
Length=446

 Score = 279 bits (713),  Expect = 4e-85, Method: Composition-based stats.
 Identities = 104/473 (22%), Positives = 177/473 (37%), Gaps = 78/473 (16%)

Query  187  TMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEE  246
               D  G Y+ I       S   KD  L  E+   + +        ++   +        
Sbjct  48   AAGDKKGSYVGIH------STGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIP-------  94

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNI  306
                   G   L +A  G + K+     + + Q   +P     +++  +RELA Q  N  
Sbjct  95   ---QSIHGTDVLCQAKSG-LGKTAVFVLSTLQQLDPVPGEVAVVVICNARELAYQIRNEY  150

Query  307  KQFKKYIDNPKLRELLIIGGVAARDQLSVLENG---VDIVVGTPGRLDDLVSTGKLNLSQ  363
             +F KY+  P ++  +  GG        +L+N      IVV TPGRL  LV    ++LS 
Sbjct  151  LRFSKYM--PDVKTAVFYGGTPISKDAELLKNKDTAPHIVVATPGRLKALVREKYIDLSH  208

Query  364  VRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIM  423
            V+  V+DE D +L       + R   +I + T   K  QV++ SATL S +++ +  + +
Sbjct  209  VKNFVIDECDKVLE---ELDMRRDVQEIFRATPRDK--QVMMFSATL-SQEIRPICRRFL  262

Query  424  HFPTWVDLKGEDS-VPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSP  482
              P  + +  E       +    + +  +                               
Sbjct  263  QNPLEIFVDDEAKLTLHGLQQYYIKLEERE------------------------------  292

Query  483  EMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSC  542
                      K     + + + + +Q IIF ++    + L +               F  
Sbjct  293  ----------KNRKLAQLLDDLEFNQVIIFVKSTTRANELTKLL---------NASNFPA  333

Query  543  VCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHR  602
            + +HG  K  ER    + FK  + R  + TDV  RGIDI  +   IN  L +E   Y+HR
Sbjct  334  ITVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTNEADQYLHR  393

Query  603  IGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNE  655
            +GR GR    GLAIS V++++++        R         +E    + + N 
Sbjct  394  VGRAGRFGTKGLAISFVSSKEDEEVLAKIQERFDVKIAEFPEEGIDPSTYLNN  446


 Score = 75.9 bits (185),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 45/103 (44%), Gaps = 9/103 (9%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F +  + PE+++A+ +  +  P+++Q  +IP  + G DVL  A++G GKT  F +  +
Sbjct  62   TGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTL  121

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            Q +     D   G+     I        +      +    F+ 
Sbjct  122  QQL-----DPVPGEVAVVVICNA----RELAYQIRNEYLRFSK  155


>sp|Q6C799|DBP8_YARLI ATP-dependent RNA helicase DBP8 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP8 PE=3 
SV=1
Length=442

 Score = 279 bits (713),  Expect = 5e-85, Method: Composition-based stats.
 Identities = 114/513 (22%), Positives = 191/513 (37%), Gaps = 84/513 (16%)

Query  203  VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAP  262
            + F+    DLGL   +   + N A+     ++ A +               G   +  A 
Sbjct  1    MSFT----DLGLPEWLNESLSNMAITKPSAIQKACIP----------QIMKGKDCIGGAR  46

Query  263  DGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
             G   K+       + +    P     L++ P+RELA Q     +QF     N  +R  L
Sbjct  47   TG-SGKTIAFAAPMLAEWSKDPCGIFGLVLTPTRELAIQI---AEQFTALGANMNIRVAL  102

Query  323  IIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN----LSQVRFLVLDEADGLLSQ  378
            I GGV    Q   L+     V+ TPGRL D + +   +      +VR++V+DEAD LL+ 
Sbjct  103  IYGGVDMVKQSLELQKMPHFVIATPGRLADHIRSSGEDTIRGFRRVRYVVMDEADRLLTP  162

Query  379  GYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF--PTWVDLKGEDS  436
            G+   +    + +P    D  + Q ++ +AT+    V+ L ++      P   ++  + +
Sbjct  163  GFVPDLKTCMDLLP----DPSKRQTLLFTATVTDA-VRALKDRTGEKGPPFIHEIASDIA  217

Query  437  VPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEY  496
            VP T+    + +       +                                       +
Sbjct  218  VPSTLTQSYLFLPGYVREAY--------------------------------------LW  239

Query  497  AVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQ  556
            A+    +++   AIIF       + L +  +                 LH + +  ER  
Sbjct  240  AILTHPDNEKKSAIIFVNRTQTAETLRRMLMAL---------DVKTASLHSEMRQQERVN  290

Query  557  NLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAI  616
             L RF+    R L+ TDVA+RG+DI  V  VIN  LP +  +Y+HR+GR  RA R G ++
Sbjct  291  ALGRFRAQAARVLVATDVASRGLDIPTVEMVINFDLPADADDYIHRVGRTARAGRKGQSV  350

Query  617  SLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWY------NEMQLLSEIE-EHLNCT  669
            SLV         ++    G       L ED      Y       + Q + ++E E+    
Sbjct  351  SLVTERDVTRVTNIEERVGTKMEKYDLIEDDKVVEEYLTPASTAKRQAVLDMEAENFGER  410

Query  670  ISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYK  702
                     + VD    K    ++ A G    K
Sbjct  411  KRIQRKKAGLDVDMKS-KNKKPKRVAKGKSDKK  442


 Score = 99.8 bits (247),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 61/156 (39%), Gaps = 20/156 (13%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F+++G+   + +++  M    P+ IQ   IP I+ G D +  A TGSGKT AF+ P++ 
Sbjct  2    SFTDLGLPEWLNESLSNMAITKPSAIQKACIPQIMKGKDCIGGARTGSGKTIAFAAPMLA  61

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD----------GLCCQ  112
                        K          +   +  +   ++ +A     +           +  Q
Sbjct  62   EW---------SKDPCGIFGLVLTPTRELAIQIAEQFTALGANMNIRVALIYGGVDMVKQ  112

Query  113  SREVKEW-HGCRATKGLMKGKHYYEVSCHDQGLCRV  147
            S E+++  H   AT G +            +G  RV
Sbjct  113  SLELQKMPHFVIATPGRLADHIRSSGEDTIRGFRRV  148


>sp|P44922|RHLB_HAEIN ATP-dependent RNA helicase RhlB OS=Haemophilus 
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) 
OX=71421 GN=rhlB PE=3 SV=2
Length=415

 Score = 278 bits (710),  Expect = 5e-85, Method: Composition-based stats.
 Identities = 100/399 (25%), Positives = 164/399 (41%), Gaps = 62/399 (16%)

Query  257  ALSKAPDGYIVKSQHSGNAQVTQTKFLPN----APKALIVEPSRELAEQTLNNIKQFKKY  312
              ++   G  +    +       T   PN     P+ALI+ P+RELA Q  N+ +   K 
Sbjct  51   GQAQTGTGKTMAFL-TATFHHLLTHQDPNLKYPHPRALILAPTRELAVQISNDAEFLAK-  108

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
                 L+  L  GG     QL  +E GVDI++GT GR+ D V  G + L +++ +VLDEA
Sbjct  109  --ASGLKTALAYGGDGYDKQLQAIERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEA  166

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D +   G+   I  +  + P      +    ++ SATL S+ V++L+ + M+        
Sbjct  167  DRMFDLGFIRDIRYLLRKCPA----PQARLTMLFSATL-SYKVRELAFEDMN--------  213

Query  433  GEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKIL  492
                                              + +  +   + G    E         
Sbjct  214  --------------------------------EPEYIEIEPEQKTGHRIKEELFYPSNQD  241

Query  493  KGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPH  552
            K    +  +++   ++ I+F  TK  C+ +  Y    G              L GD    
Sbjct  242  KMALLLTLMEDEWPERCIVFANTKHRCEEIWGYLAADG---------HRVGLLTGDVAQK  292

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM  612
            +R   L++F  GD+  L+ TDVAARG+ I  V +V N  LPD++++YVHRIGR GRA   
Sbjct  293  KRLSLLKQFTDGDLDILVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGES  352

Query  613  GLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTI  651
            G++IS    E       +    G     ++ + +    +
Sbjct  353  GVSISFACEEYAMNLPAIEEYIGHSIPVSQYETEALLEL  391


 Score = 92.5 bits (228),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 3/104 (3%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS + + P +  A+ +  +   T IQA S+P+ L G DV   A+TG+GKT AF       
Sbjct  11   FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH  70

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            +      Q    K         +   +  +   +     A  S 
Sbjct  71   LLTH---QDPNLKYPHPRALILAPTRELAVQISNDAEFLAKASG  111


>sp|Q07478|SUB2_YEAST ATP-dependent RNA helicase SUB2 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SUB2 
PE=1 SV=1
Length=446

 Score = 279 bits (713),  Expect = 5e-85, Method: Composition-based stats.
 Identities = 104/473 (22%), Positives = 177/473 (37%), Gaps = 78/473 (16%)

Query  187  TMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEE  246
               D  G Y+ I       S   KD  L  E+   + +        ++   +        
Sbjct  48   AAGDKKGSYVGIH------STGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIP-------  94

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNI  306
                   G   L +A  G + K+     + + Q   +P     +++  +RELA Q  N  
Sbjct  95   ---QSIHGTDVLCQAKSG-LGKTAVFVLSTLQQLDPVPGEVAVVVICNARELAYQIRNEY  150

Query  307  KQFKKYIDNPKLRELLIIGGVAARDQLSVLENG---VDIVVGTPGRLDDLVSTGKLNLSQ  363
             +F KY+  P ++  +  GG        +L+N      IVV TPGRL  LV    ++LS 
Sbjct  151  LRFSKYM--PDVKTAVFYGGTPISKDAELLKNKDTAPHIVVATPGRLKALVREKYIDLSH  208

Query  364  VRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIM  423
            V+  V+DE D +L       + R   +I + T   K  QV++ SATL S +++ +  + +
Sbjct  209  VKNFVIDECDKVLE---ELDMRRDVQEIFRATPRDK--QVMMFSATL-SQEIRPICRRFL  262

Query  424  HFPTWVDLKGEDS-VPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSP  482
              P  + +  E       +    + +  +                               
Sbjct  263  QNPLEIFVDDEAKLTLHGLQQYYIKLEERE------------------------------  292

Query  483  EMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSC  542
                      K     + + + + +Q IIF ++    + L +               F  
Sbjct  293  ----------KNRKLAQLLDDLEFNQVIIFVKSTTRANELTKLL---------NASNFPA  333

Query  543  VCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHR  602
            + +HG  K  ER    + FK  + R  + TDV  RGIDI  +   IN  L +E   Y+HR
Sbjct  334  ITVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTNEADQYLHR  393

Query  603  IGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNE  655
            +GR GR    GLAIS V++++++        R         +E    + + N 
Sbjct  394  VGRAGRFGTKGLAISFVSSKEDEEVLAKIQERFDVKIAEFPEEGIDPSTYLNN  446


 Score = 75.9 bits (185),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 45/103 (44%), Gaps = 9/103 (9%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F +  + PE+++A+ +  +  P+++Q  +IP  + G DVL  A++G GKT  F +  +
Sbjct  62   TGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTL  121

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            Q +     D   G+     I        +      +    F+ 
Sbjct  122  QQL-----DPVPGEVAVVVICNA----RELAYQIRNEYLRFSK  155


>sp|Q6BGU8|DBP8_DEBHA ATP-dependent RNA helicase DBP8 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP8 PE=3 SV=2
Length=441

 Score = 278 bits (712),  Expect = 6e-85, Method: Composition-based stats.
 Identities = 105/478 (22%), Positives = 180/478 (38%), Gaps = 77/478 (16%)

Query  238  LKFNFGEEEFKFPPKDGFVALSKAPDGY---------IVKSQHSGNAQVTQTKFLPNAPK  288
            L       +   P       + K   G+           K+       +TQ    P+   
Sbjct  12   LSEALNSMKIHTPTTIQSACIPKILKGHDCIGGAKTGSGKTIAFAAPMLTQWSEDPSGIY  71

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
             L++ P+RELA Q     +QF     +  ++  +I+GG     Q   L+     VV TPG
Sbjct  72   GLVLTPTRELALQI---AEQFAALGSSMNIKVSVIVGGEDIVKQALELQRRPHFVVATPG  128

Query  349  RLDDLVSTGKLN----LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            RL D +     +    L +V++L+LDEAD LLS  +   + R  N +P       + Q +
Sbjct  129  RLADHILNSGEDTVCGLRRVKYLILDEADRLLSNSFGGDLERCFNILPST----DKRQTL  184

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + +AT+    V+ L ++    P       +  +P  +H V                    
Sbjct  185  LFTATVTDA-VRALKDR----PV-----PKGKLPVFIHEV--------------------  214

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
               +   K       +   ++  +       +++  + ++    +IIF       + L +
Sbjct  215  ---ETVDKVAIPSTLSVKYVFVPSYVKEAYLHSILNLPQYSDSLSIIFTNRTATAELLRR  271

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
               +          +F    LH +    ER  +L RFK G  + LI TDVA+RG+DI  V
Sbjct  272  TLRKL---------EFRVASLHSEMPQTERTNSLHRFKAGAAKILIATDVASRGLDIPTV  322

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLK  644
              V+N  +P +  +++HR+GR  RA R G AIS+VA +       +     K        
Sbjct  323  ELVVNYDIPADADDFIHRVGRTARAGRKGDAISIVAEKDVDRILAIEERINKKMDLIEDI  382

Query  645  EDGGCTIWYNEMQLLSEIEEHLNCT---ISQVEPDIKVPVDEFDGKVTYGQKRAAGGG  699
             D               I++ LN T     +   D+         K+   +++A  G 
Sbjct  383  SDNKV------------IKDSLNKTSVAKREAFMDMDRENFGEKRKINKSKRQANEGT  428


 Score = 101 bits (252),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 20/156 (13%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F E+GV   +++A+  M    PT IQ+  IP IL G D +  A+TGSGKT AF+ P++ 
Sbjct  2    SFEELGVSKWLSEALNSMKIHTPTTIQSACIPKILKGHDCIGGAKTGSGKTIAFAAPMLT  61

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA----------IGSDGLCCQ  112
               E                   +   +  +   ++ +A            +G + +  Q
Sbjct  62   QWSE---------DPSGIYGLVLTPTRELALQIAEQFAALGSSMNIKVSVIVGGEDIVKQ  112

Query  113  SREV-KEWHGCRATKGLMKGKHYYEVSCHDQGLCRV  147
            + E+ +  H   AT G +             GL RV
Sbjct  113  ALELQRRPHFVVATPGRLADHILNSGEDTVCGLRRV  148


>sp|O01836|GLH3_CAEEL ATP-dependent RNA helicase glh-3 OS=Caenorhabditis 
elegans OX=6239 GN=glh-3 PE=1 SV=1
Length=720

 Score = 287 bits (733),  Expect = 6e-85, Method: Composition-based stats.
 Identities = 99/427 (23%), Positives = 172/427 (40%), Gaps = 58/427 (14%)

Query  252  KDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNA------PKALIVEPSRELAEQTLNN  305
                +A ++   G          +++   K L         P+ +I+ P+RELA+Q  N 
Sbjct  335  GKDILACAQTGSGKTAAFLLPIMSRLILEKDLNYGAEGGCYPRCIILTPTRELADQIYNE  394

Query  306  IKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVR  365
             ++F  Y    +++   + GG+      S +  G  I+VGT GR+      G + L + R
Sbjct  395  GRKFS-YQSVMEIKP--VYGGINVGYNKSQIMKGCTIIVGTIGRVKHFCEDGAIKLDKCR  451

Query  366  FLVLDEADGLLS-QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH  424
            +LVLDEAD ++   G+   I ++ N   +      + Q ++ SAT  S  V++ + K++ 
Sbjct  452  YLVLDEADRMIDSMGFGPEIEQIINY--KNMPKNDKRQTMMFSATFPS-SVQEAARKLLR  508

Query  425  -FPTWVDLKGEDSVPDTVHHVVVPVN--PKTDRLWERLGKSHIRTDDVHAKDNTRPGANS  481
               T + +    +    V       +   K D+L + LG                     
Sbjct  509  EDYTMITIDKIGAANKCVIQEFELCDRTSKVDKLLKLLG---------------------  547

Query  482  PEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFS  541
                     I    Y      +  + + I+F   +   D L                Q  
Sbjct  548  ---------IDIDTYTTEKNSDVFVKKTIVFVAQQKMADTLASIM---------SAAQVP  589

Query  542  CVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH  601
             + +HG R+  ER   L+ F+ G    LI T V  RG+DI GV +VIN  +P+   +Y+H
Sbjct  590  AITIHGAREQKERSAALKLFRSGAKPVLIATAVVERGLDIKGVDHVINYDMPNNIDDYIH  649

Query  602  RIGRVGRAERMGLAISLVA-TEKEKVWYHVCSSR--GKGCYNTRLKEDGGCTIWYNEMQL  658
            RIGR GR    G A S ++  +  ++   +  +    +    + +KE  G T   N+ + 
Sbjct  650  RIGRTGRVGNSGRATSFISLADDVQILPQLVRTLADAEQVVPSWMKEAAGGTSNPNKFEK  709

Query  659  LSEIEEH  665
              + EE 
Sbjct  710  SIDTEEP  716


 Score = 99.8 bits (247),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 49/103 (48%), Gaps = 2/103 (2%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +FS+  +   + + VE   +   T IQ  ++PL+  G D+L  A+TGSGKT AF +P++
Sbjct  298  KSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLPIM  357

Query  62   QIVYETLKDQQEGKK-GKTTIKTGASVLNKWQMNPYDRGSAFA  103
              +    KD   G + G        +   +     Y+ G  F+
Sbjct  358  SRLI-LEKDLNYGAEGGCYPRCIILTPTRELADQIYNEGRKFS  399


>sp|Q54IV3|DDX42_DICDI Probable ATP-dependent RNA helicase ddx42 
OS=Dictyostelium discoideum OX=44689 GN=ddx42 PE=3 SV=1
Length=986

 Score = 292 bits (747),  Expect = 7e-85, Method: Composition-based stats.
 Identities = 94/390 (24%), Positives = 160/390 (41%), Gaps = 59/390 (15%)

Query  247  FKFPPKDGFVALSKAPDGYIVKS-QHSGNAQVTQTK-FLPNAPKALIVEPSRELAEQTLN  304
                     +A++K   G        S +  + Q      + P AL + P+RELA Q   
Sbjct  337  PIALSGRDLIAIAKTGSGKTATFIWPSISHIMDQPYLEKGDGPIALFLAPTRELAHQIYL  396

Query  305  NIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQV  364
               ++ KY    KL+  ++ GGV+ + Q   L+ G +I+V TPGRL D++      L++V
Sbjct  397  ETLKYSKYF---KLKTTVLYGGVSKQQQCKELKAGCEIIVATPGRLIDMIKLKATKLNRV  453

Query  365  RFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH  424
             +LVLDEAD +   G+   +  + N +          Q ++ SAT    +V++ +  I+ 
Sbjct  454  SYLVLDEADKMFDFGFGPQVLSIVNHV------RPDRQTLLFSATF-KPNVEEFARTILS  506

Query  425  FPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEM  484
             P  + +    S    +  +V  +   +D+      +  +                    
Sbjct  507  DPIKISIGMIGSANSDITQIVQVLKSDSDKWNWLTNQLALLLS-----------------  549

Query  485  WSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC  544
                                     +IF  TK+  + L     + G         F    
Sbjct  550  ---------------------QGSVLIFVSTKVAVEQLSSNLTKFG---------FQTCT  579

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            LHGD+   ER Q ++ FK+G +  LI TDVAARG+DI  +  V+N     + +++ HRIG
Sbjct  580  LHGDKNQIERSQTIQTFKEGKINILIATDVAARGLDIPLIKNVVNYDTSRDIESHTHRIG  639

Query  605  RVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            R GRA   G+A +L+  +       +  + 
Sbjct  640  RTGRAGNTGVAYTLITPKDIHFSVDLIKNL  669


 Score = 104 bits (260),  Expect = 8e-22, Method: Composition-based stats.
 Identities = 44/177 (25%), Positives = 68/177 (38%), Gaps = 17/177 (10%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F   G    + QA+ +     PT IQ ++IP+ L G D++  A+TGSGKT  F  P 
Sbjct  304  VTSFGHYGFDDILLQAIAKQSIETPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPS  363

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA--------IGSDGLCCQ  112
            I  +     DQ   +KG   I    +   +     Y     ++        +   G+  Q
Sbjct  364  ISHIM----DQPYLEKGDGPIALFLAPTRELAHQIYLETLKYSKYFKLKTTVLYGGVSKQ  419

Query  113  SREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGG  169
             +  +   GC        G+    +      L RV +      LD     F FGFG 
Sbjct  420  QQCKELKAGCEIIVA-TPGRLIDMIKLKATKLNRVSYLV----LDEADKMFDFGFGP  471


>sp|Q12389|DBP10_YEAST ATP-dependent RNA helicase DBP10 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 
GN=DBP10 PE=1 SV=2
Length=995

 Score = 292 bits (747),  Expect = 7e-85, Method: Composition-based stats.
 Identities = 119/541 (22%), Positives = 204/541 (38%), Gaps = 73/541 (13%)

Query  195  YLDIDKGHVKFSKN-----------GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFG  243
              D D  +  FS N               GL+  +  ++K +       ++   +     
Sbjct  114  GDDEDDVNEYFSTNNLEKTKHKKGSFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLIL-  172

Query  244  EEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTL  303
                        V +++   G           ++        A +A+I+ PSRELA QT 
Sbjct  173  -------QSRDIVGMARTGSGKTAAFILPMVEKLKSHSGKIGA-RAVILSPSRELAMQTF  224

Query  304  NNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQ  363
            N  K F +     +LR +L+ GG +  +Q  ++    D+++ TPGR   L     L+L  
Sbjct  225  NVFKDFAR---GTELRSVLLTGGDSLEEQFGMMMTNPDVIIATPGRFLHLKVEMNLDLKS  281

Query  364  VRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIM  423
            V ++V DEAD L   G+ + +N +   +P         Q ++ SATL +  V    +  +
Sbjct  282  VEYVVFDEADRLFEMGFQEQLNELLASLPTT------RQTLLFSATLPNSLV-DFVKAGL  334

Query  424  HFPTWVDLKGEDSVPDTVHHVVVPV-NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSP  482
              P  V L  E  V + +  + +   N   +     + +  I+     ++   +   ++ 
Sbjct  335  VNPVLVRLDAETKVSENLEMLFLSSKNADREANLLYILQEIIKIPLATSEQLQKLQNSNN  394

Query  483  EMWSEAIKILKGEYAVRAIKEHKMDQ--------------AIIFCRTKIDCDNLEQYFIQ  528
            E  S++      +   R  K+ K  +               I+F  T+   + + Q    
Sbjct  395  EADSDSDDENDRQKKRRNFKKEKFRKQKMPAANELPSEKATILFVPTRHHVEYISQLLRD  454

Query  529  QGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVI  588
             G         +    ++G    H RK+ L  F+ G    L+ TDVAARG+DI  +  VI
Sbjct  455  CG---------YLISYIYGTLDQHARKRQLYNFRAGLTSILVVTDVAARGVDIPMLANVI  505

Query  589  NVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGG  648
            N TLP   + +VHR+GR  RA   G A S+VA  +      +    GK            
Sbjct  506  NYTLPGSSKIFVHRVGRTARAGNKGWAYSIVAENELPYLLDLELFLGKKI----------  555

Query  649  CTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDIL  708
                     LL+ + + L   + +   D   P  +F        KR   G   +  V+ L
Sbjct  556  ---------LLTPMYDSLVDVMKKRWIDEGKPEYQFQPPKLSYTKRLVLGSCPRLDVEGL  606

Query  709  A  709
             
Sbjct  607  G  607


 Score = 106 bits (264),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 30/105 (29%), Positives = 51/105 (49%), Gaps = 7/105 (7%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F   G+   +   ++   +  PT IQ ++IPLIL   D++  A TGSGKT AF +P+++
Sbjct  138  SFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVE  197

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
             +         GK G   +    S   +  M  ++    FA G++
Sbjct  198  KLKSHS-----GKIGARAV--ILSPSRELAMQTFNVFKDFARGTE  235


>sp|A7TK63|DBP8_VANPO ATP-dependent RNA helicase DBP8 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=DBP8 PE=3 SV=1
Length=431

 Score = 278 bits (711),  Expect = 8e-85, Method: Composition-based stats.
 Identities = 101/483 (21%), Positives = 178/483 (37%), Gaps = 68/483 (14%)

Query  228  FPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY---------IVKSQHSGNAQVT  278
            F +  L    ++ +        P       + +   G            K+       ++
Sbjct  4    FKSLGLSRWLVE-SLNAMRITHPTAIQKHCIPEILKGRDCIGGAKTGSGKTIAFAGPMLS  62

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            Q    P+    +++ P+RELA Q     +QF     +  +R  L++GG +   Q   L+ 
Sbjct  63   QWSDDPSGMFGVVLTPTRELAIQI---AEQFTALGSSMNIRVCLVVGGESIVKQALELQK  119

Query  339  GVDIVVGTPGRLDDLV----STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV  394
                ++ TPGRL   +          LS+V++LVLDEAD +L+Q ++  ++    ++P  
Sbjct  120  KPHFIIATPGRLAHHILSSGEEVVGGLSRVKYLVLDEADLILTQTFAADLSTCIAKLP--  177

Query  395  TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDR  454
                ++ Q ++ +AT+    V+ L               +DS P    + V  V+     
Sbjct  178  --PKQKRQTLLFTATITDQ-VRALQNAP----------AQDSKPPLFAYEVENVDNVAVP  224

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
               +L    +                 PE   EA       Y +   +++K    I+F  
Sbjct  225  STLKLEYLLV-----------------PEHVKEAY-----LYQLLTCEDYKDSSVIVFVN  262

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
                 + L +           +  +     LH      ER  +L+RF+    R LI TDV
Sbjct  263  RTTAAEVLRRTL---------RSLEVRVASLHSQMPQSERINSLQRFRANAARVLIATDV  313

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            AARG+DI  V  VIN  +P +   ++HR GR  RA R G AIS V          +    
Sbjct  314  AARGLDIPTVELVINYDIPQDPDTFIHRSGRTARAGRSGDAISFVTPRDVSRIEAIEERI  373

Query  635  GKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKR  694
             K     ++ E           + L+++ +    ++  +E        +   K    +K 
Sbjct  374  NK-----KMDECKKVHDTAVIRKALTKVTKAKRESLMDMEKANFGEKRKTQKKKNLAEKS  428

Query  695  AAG  697
               
Sbjct  429  LRA  431


 Score = 99.8 bits (247),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 62/158 (39%), Gaps = 20/158 (13%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M  F  +G+   + +++  M    PT IQ   IP IL G D +  A+TGSGKT AF+ P+
Sbjct  1    MQDFKSLGLSRWLVESLNAMRITHPTAIQKHCIPEILKGRDCIGGAKTGSGKTIAFAGPM  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA----------IGSDGLC  110
            +    +                   +   +  +   ++ +A            +G + + 
Sbjct  61   LSQWSD---------DPSGMFGVVLTPTRELAIQIAEQFTALGSSMNIRVCLVVGGESIV  111

Query  111  CQSREV-KEWHGCRATKGLMKGKHYYEVSCHDQGLCRV  147
             Q+ E+ K+ H   AT G +             GL RV
Sbjct  112  KQALELQKKPHFIIATPGRLAHHILSSGEEVVGGLSRV  149


>sp|Q0U8V9|DBP8_PHANO ATP-dependent RNA helicase DBP8 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=DBP8 PE=3 SV=1
Length=508

 Score = 280 bits (717),  Expect = 8e-85, Method: Composition-based stats.
 Identities = 100/435 (23%), Positives = 166/435 (38%), Gaps = 56/435 (13%)

Query  259  SKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKL  318
            S+   G  V         + +    P+    LI+ P+RELA Q    +K          +
Sbjct  121  SRTGTGKTVAFSVPI---LQKWAEDPSGIFGLIITPTRELAIQIYEQVKAISA---PQSM  174

Query  319  RELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN----LSQVRFLVLDEADG  374
            + +L+ GG   R+Q   L +   +V+ TPGRL + + T   +    L +VRF+V DEAD 
Sbjct  175  KPILVTGGSDQREQAIALASRPHVVIATPGRLAEHIKTSGEDTICGLRRVRFVVFDEADR  234

Query  375  LLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE  434
            LL+ G    I  +   +  V    ++ Q ++ +AT+               P  + LK +
Sbjct  235  LLAPGRGSMIPDIETCL-SVLPPKEQRQTLLFTATVT--------------PEVLALKSQ  279

Query  435  DSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG  494
               P  +   V  V+ +T      L + +++T   H +        +P   ++       
Sbjct  280  PRAPGRLPIFVCEVDTETLATPASLSQLYLQTPVTHKECYLHVLLLTPLNLTK-------  332

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
                           IIFC        LE                     LH   K  +R
Sbjct  333  -------------SVIIFCNRTKTATLLEYMLRML---------DHRVTALHSGLKQQDR  370

Query  555  KQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGL  614
              NL RF+    R L+ TDVAARG+DI  V  V+N  +P +  +Y+HR+GR  RA R G 
Sbjct  371  ISNLARFRAQAARILVATDVAARGLDIPEVGLVVNFDVPRDPDDYIHRVGRTARAGRPGN  430

Query  615  AISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVE  674
            +++ +     ++   +    G     +  +E+G           L  + E     +  +E
Sbjct  431  SVTFIGQRDVELVLAIEERVGGKM--SEFEEEGVSVEGRVVRDALKIVTEKKREALLNIE  488

Query  675  PDIKVPVDEFDGKVT  689
                V  +   G   
Sbjct  489  EGRDVKGNRMVGMKK  503


 Score = 97.5 bits (241),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 9/102 (9%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F+ + V P +  ++  M+   PT IQ   IP IL G D +  + TG+GKT AFS+P++Q
Sbjct  78   SFASIDVAPWLVASLASMEIKRPTGIQKACIPEILKGRDCIGGSRTGTGKTVAFSVPILQ  137

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
               E                   +   +  +  Y++  A + 
Sbjct  138  KWAE---------DPSGIFGLIITPTRELAIQIYEQVKAISA  170


>sp|A7E436|DBP8_SCLS1 ATP-dependent RNA helicase dbp8 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=dbp8 PE=3 SV=1
Length=540

 Score = 281 bits (719),  Expect = 8e-85, Method: Composition-based stats.
 Identities = 110/464 (24%), Positives = 169/464 (36%), Gaps = 71/464 (15%)

Query  224  NQALFPACVLKNAELKFNFGEEEFKFPPKDG---FVALSKAPDGYIVKSQHSGNAQVTQT  280
             Q  F A  +K   L  + G    K P          + K  D        SG       
Sbjct  109  AQTTFAALDVK-PWLVASLGAMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAV  167

Query  281  KFL------PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLS  334
              L      P    AL++ P+RELA Q     +QFK       L+ +LI GG   R Q +
Sbjct  168  PILQKWAEDPFGIFALVLTPTRELALQIY---EQFKAISSPQSLKAVLITGGSDMRPQAT  224

Query  335  VLENGVDIVVGTPGRLDDLVSTGKLN----LSQVRFLVLDEADGLLSQG-YSDFINRMHN  389
             L     +V+ TPGRL D + T   +    L +VR +VLDEAD LL+ G     +  +  
Sbjct  225  ALAQRPHVVIATPGRLADHIRTSGEDTVCALRRVRMVVLDEADRLLASGSVGSMLPDVEE  284

Query  390  QIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN  449
             +  +    +  Q ++ +AT+               P    LK            V  V+
Sbjct  285  CLSLLPPPSE-RQTLLFTATVT--------------PEVRALKDMPRTLGKPPVFVCEVD  329

Query  450  PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA  509
             +   +   L + H++    H +                             +++     
Sbjct  330  TQALAIPSSLNQMHLQVPVTHREHYLHMFL--------------------LTEKNLPKSI  369

Query  510  IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL  569
            +IFC      D L                +     LH      +R  NL RF+    R L
Sbjct  370  VIFCNRTATADYLTHLLRLL---------EHRVTALHSKLPQRQRIDNLGRFRASAARIL  420

Query  570  ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            + TDVAARG+DI  V  VIN  +P +  +Y+HR+GR  RA R G A++ V     ++   
Sbjct  421  VATDVAARGLDIPEVGLVINYDVPRDPDDYIHRVGRTARAGRKGEAVTFVGQRDVQLILA  480

Query  630  VCSSRGKGCY---------NTRLKEDGGCTIWYNEMQLLSEIEE  664
            +    G+             TR+  +    +   + + + EIEE
Sbjct  481  IEKRVGRQMEAWTEEGVNLETRVIRESLKLVGEKKREAMLEIEE  524


 Score = 95.6 bits (236),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 44/103 (43%), Gaps = 9/103 (9%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F+ + V P +  ++  M    PT IQ   IP IL G D +  + TGSGKT AF++P++
Sbjct  111  TTFAALDVKPWLVASLGAMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPIL  170

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            Q   E                   +   +  +  Y++  A + 
Sbjct  171  QKWAE---------DPFGIFALVLTPTRELALQIYEQFKAISS  204


>sp|P0CQ96|SUB2_CRYNJ ATP-dependent RNA helicase SUB2 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=SUB2 PE=3 SV=1
Length=442

 Score = 278 bits (711),  Expect = 8e-85, Method: Composition-based stats.
 Identities = 102/417 (24%), Positives = 161/417 (39%), Gaps = 72/417 (17%)

Query  232  VLKNAELKFNFGEEEFKFPPKD----------GFVALSKAPDGYIVKSQHSGNAQVTQTK  281
             L   EL     +  F+ P +           G   L +A  G   K+     A + Q +
Sbjct  64   FLLKPELLRAISDLGFEHPSEVQQECIPQAILGTDVLCQAKSGM-GKTAVFVLAALQQIE  122

Query  282  FLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG--  339
             +      +I+  +RELA Q  N   +F K++    +R  +  GG        +L N   
Sbjct  123  PVDGEVSIIILCHTRELAYQIKNEFTRFSKFM--TNVRTGVFYGGTPISADQEILANKEK  180

Query  340  -VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
               IVVGTPGR   LV   KLN S+V+  VLDE D +L       + R   +I + T   
Sbjct  181  CPHIVVGTPGRTMALVRDKKLNASKVKHFVLDECDKMLE---QLDMRRDVQEIFRATPHH  237

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDS-VPDTVHHVVVPVNPKTDRLWE  457
            K  QV++ SATL S D++   +K M  P  + +  E       +    + +  +      
Sbjct  238  K--QVMMFSATL-SKDIRATCKKFMQSPLEIYVDDETKLTLHGLQQFYLKLEERE-----  289

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
                                               K       +   + +Q  IF ++  
Sbjct  290  -----------------------------------KNRKLNDLLDNLEFNQVCIFVKSVQ  314

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
                L+    +           F  +C+H   +  ER    ++FK  + R L+ TD+  R
Sbjct  315  RATQLDALLQE---------CNFPSICIHSGLQQAERISRFQQFKAFEKRILVATDIFGR  365

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            GID+  V  VIN   P +  +Y+HR+GR GR    GLAIS V+++ ++        R
Sbjct  366  GIDVERVNVVINYDAPSDADSYLHRVGRAGRFGTKGLAISFVSSDADQEVLQRIQER  422


 Score = 84.4 bits (207),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 9/108 (8%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F +  + PE+ +A+ ++ +  P+++Q E IP  + G DVL  A++G GKT  F +  +
Sbjct  59   TGFRDFLLKPELLRAISDLGFEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLAAL  118

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGL  109
            Q +        E   G+ +I        +      +  + F+     +
Sbjct  119  QQI--------EPVDGEVSI-IILCHTRELAYQIKNEFTRFSKFMTNV  157


>sp|P0CQ97|SUB2_CRYNB ATP-dependent RNA helicase SUB2 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=SUB2 PE=3 SV=1
Length=442

 Score = 278 bits (711),  Expect = 8e-85, Method: Composition-based stats.
 Identities = 102/417 (24%), Positives = 161/417 (39%), Gaps = 72/417 (17%)

Query  232  VLKNAELKFNFGEEEFKFPPKD----------GFVALSKAPDGYIVKSQHSGNAQVTQTK  281
             L   EL     +  F+ P +           G   L +A  G   K+     A + Q +
Sbjct  64   FLLKPELLRAISDLGFEHPSEVQQECIPQAILGTDVLCQAKSGM-GKTAVFVLAALQQIE  122

Query  282  FLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG--  339
             +      +I+  +RELA Q  N   +F K++    +R  +  GG        +L N   
Sbjct  123  PVDGEVSIIILCHTRELAYQIKNEFTRFSKFM--TNVRTGVFYGGTPISADQEILANKEK  180

Query  340  -VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
               IVVGTPGR   LV   KLN S+V+  VLDE D +L       + R   +I + T   
Sbjct  181  CPHIVVGTPGRTMALVRDKKLNASKVKHFVLDECDKMLE---QLDMRRDVQEIFRATPHH  237

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDS-VPDTVHHVVVPVNPKTDRLWE  457
            K  QV++ SATL S D++   +K M  P  + +  E       +    + +  +      
Sbjct  238  K--QVMMFSATL-SKDIRATCKKFMQSPLEIYVDDETKLTLHGLQQFYLKLEERE-----  289

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
                                               K       +   + +Q  IF ++  
Sbjct  290  -----------------------------------KNRKLNDLLDNLEFNQVCIFVKSVQ  314

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
                L+    +           F  +C+H   +  ER    ++FK  + R L+ TD+  R
Sbjct  315  RATQLDALLQE---------CNFPSICIHSGLQQAERISRFQQFKAFEKRILVATDIFGR  365

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            GID+  V  VIN   P +  +Y+HR+GR GR    GLAIS V+++ ++        R
Sbjct  366  GIDVERVNVVINYDAPSDADSYLHRVGRAGRFGTKGLAISFVSSDADQEVLQRIQER  422


 Score = 84.4 bits (207),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 9/108 (8%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F +  + PE+ +A+ ++ +  P+++Q E IP  + G DVL  A++G GKT  F +  +
Sbjct  59   TGFRDFLLKPELLRAISDLGFEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLAAL  118

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGL  109
            Q +        E   G+ +I        +      +  + F+     +
Sbjct  119  QQI--------EPVDGEVSI-IILCHTRELAYQIKNEFTRFSKFMTNV  157


>sp|A1CKJ0|DBP8_ASPCL ATP-dependent RNA helicase dbp8 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp8 PE=3 SV=1
Length=523

 Score = 281 bits (718),  Expect = 8e-85, Method: Composition-based stats.
 Identities = 104/431 (24%), Positives = 166/431 (39%), Gaps = 66/431 (15%)

Query  259  SKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKL  318
            S+   G  +         + +    P     LI+ P+RELA Q    IK          +
Sbjct  137  SRTGSGKTIAFSV---PMLQKWAEDPLGIFGLILTPTRELALQIFEQIKAISA---PQSM  190

Query  319  RELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN----LSQVRFLVLDEADG  374
            + +LI GG   R Q   L     +VV TPGRL D + +   +    L +VR +VLDEAD 
Sbjct  191  KPVLITGGTDMRSQALALAGRPHVVVATPGRLADHIKSSGEDTVCGLKRVRMVVLDEADR  250

Query  375  LLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKL------SEKIMHFPTW  428
            LLS G    +  +   +  +    +  Q ++ +AT+   +V+ L      + K   F T 
Sbjct  251  LLSSGPGSMLPDVETCLSALPPSSE-RQTLLFTATVTP-EVRALKNMPRAANKPPVFVTE  308

Query  429  VDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEA  488
            +  + + +VP T+    + V      L  R    H+                        
Sbjct  309  ISSESQGTVPPTLKQTYLKVP-----LTHREAFLHV------------------------  339

Query  489  IKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGD  548
                     + + + +    AIIFC      D LE+   +                LH  
Sbjct  340  ---------LLSTEGNSTKPAIIFCNHTKTADLLERMLRRL---------SHRVTSLHSL  381

Query  549  RKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
                ER  NL RF+    R L+ TDVA+RG+DI  V  V+N  +P    +YVHR+GR  R
Sbjct  382  LPQSERNANLARFRASAARILVATDVASRGLDIPSVSLVVNYDVPRNPDDYVHRVGRTAR  441

Query  609  AERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNC  668
            A R G +++LV     ++   + +  G+       +E            +L E+ E    
Sbjct  442  AGRSGESVTLVGQRDVQLVLAIEARVGRQMEEWS-EEGVSIEGRVVRTGVLKEVGEAKRE  500

Query  669  TISQVEPDIKV  679
               +++    V
Sbjct  501  ASGEIDEGRDV  511


 Score = 99.0 bits (245),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 56/141 (40%), Gaps = 20/141 (14%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            ++FS + V P +  ++  +    PT IQ   IP IL G D +  + TGSGKT AFS+P++
Sbjct  93   SSFSALNVAPWLVGSLTTLAVRKPTAIQKACIPEILNGKDCIGGSRTGSGKTIAFSVPML  152

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI----------GSDGLCC  111
            Q   E                   +   +  +  +++  A +           G   +  
Sbjct  153  QKWAE---------DPLGIFGLILTPTRELALQIFEQIKAISAPQSMKPVLITGGTDMRS  203

Query  112  QSREVK-EWHGCRATKGLMKG  131
            Q+  +    H   AT G +  
Sbjct  204  QALALAGRPHVVVATPGRLAD  224


>sp|A5DZT7|DBP10_LODEL ATP-dependent RNA helicase DBP10 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP10 PE=3 SV=1
Length=948

 Score = 291 bits (744),  Expect = 1e-84, Method: Composition-based stats.
 Identities = 106/442 (24%), Positives = 172/442 (39%), Gaps = 39/442 (9%)

Query  253  DGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKY  312
               V +++   G           ++      P+  +A+I+ PSRELA QT   +K+F   
Sbjct  159  RDVVGMARTGSGKTAAFVLPLIEKLKLR--SPSGVRAVILSPSRELALQTYKQVKEFSH-  215

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
                 L+ +++IGG +  +    +    DI+V TPGR   L    + +L  V+++V DEA
Sbjct  216  --GTNLQSIVLIGGDSLEEDFGKMMTKPDIIVCTPGRFLHLKVEMQYDLMSVQYIVFDEA  273

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D L   G+++ +N +   +P         Q ++ SATL    V+  ++  +  P  V L 
Sbjct  274  DRLFEMGFAEQLNELLLALP------SNRQSLLFSATLPRSLVE-FAKAGLTNPVLVRLD  326

Query  433  GEDSVPDTVH----------------HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTR  476
             +  + + +                 +++  V        E + K           D   
Sbjct  327  ADSKLSENLQMAYFTTKRNEREANLLYILQEVIKMPLGTPEEVKKLAAMDKRSIESDEEN  386

Query  477  PGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKK  536
              A       +     K E    A +       IIF  TK   + +       G      
Sbjct  387  EEAKEQNNGKKRKYKFKKERMPSAKELPSEKSTIIFVPTKHHVEYVTSLLKDAG------  440

Query  537  GHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEK  596
               +    ++G    H RK  L  F+ G  + L+ TDVAARGIDI  +  VIN TLP   
Sbjct  441  ---YLVSYIYGTLDQHARKNQLYLFRIGLTKILVVTDVAARGIDIPVLANVINFTLPGSS  497

Query  597  QNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEM  656
            + ++HR+GR  RA   G A S+V + +      +    GK    T + E         + 
Sbjct  498  KIFIHRVGRTARAGNKGWAYSIVNSSELPYLLDLEIFLGKKLLLTSMHEAK--CELLKKK  555

Query  657  QLLSEIEEHLNCTISQVEPDIK  678
            Q  S I   +N T   V   I 
Sbjct  556  QGGSFIPPRINYTERLVVGAIP  577


 Score = 105 bits (262),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 28/105 (27%), Positives = 48/105 (46%), Gaps = 8/105 (8%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F+  G    +   + +  +  PT IQ  SIPLI+   DV+  A TGSGKT AF +P+I+
Sbjct  122  SFASFGFSKFLLANIAKKGYKQPTPIQRRSIPLIIDNRDVVGMARTGSGKTAAFVLPLIE  181

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
             +        + +          S   +  +  Y +   F+ G++
Sbjct  182  KL--------KLRSPSGVRAVILSPSRELALQTYKQVKEFSHGTN  218


>sp|Q2UKX3|DBP8_ASPOR ATP-dependent RNA helicase dbp8 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp8 
PE=3 SV=1
Length=443

 Score = 278 bits (711),  Expect = 1e-84, Method: Composition-based stats.
 Identities = 97/382 (25%), Positives = 149/382 (39%), Gaps = 65/382 (17%)

Query  259  SKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKL  318
            S+   G  +        +  Q  F      A+++ P+RELA Q    IK          +
Sbjct  57   SRTGSGKTIAFAVPILQKWAQDPF---GIFAVVLTPTRELALQIYEQIKAISA---PQSM  110

Query  319  RELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN----LSQVRFLVLDEADG  374
            + LLI GG   R Q   L     +V+ TPGRL D ++T   +    L +VR +VLDEAD 
Sbjct  111  KPLLITGGTDMRSQALALSQRPHVVIATPGRLADHINTSGEDTVCGLKRVRMVVLDEADR  170

Query  375  LLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLS------EKIMHFPTW  428
            LL+ G    +  +   +  +    +  Q ++ +ATL   +V+ L        K   F T 
Sbjct  171  LLAPGPGSMLPDVETCLSALPPSSE-RQTLLFTATLTP-EVRALKSMPRAENKPPVFVTE  228

Query  429  VDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEA  488
            +  +   ++P T+    + V                                        
Sbjct  229  ISTENNGAIPPTLKQTYLKVP--------------------------------------M  250

Query  489  IKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGD  548
                   + + + + +    AIIFC      D LE+   +                LH  
Sbjct  251  THREAFLHVLLSTERNSTKPAIIFCNHTKTADLLERMLRRL---------SHRVTSLHSL  301

Query  549  RKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
                ER  NL RF+    R L+ TDVA+RG+DI  V  VIN  +P    +YVHR+GR  R
Sbjct  302  LPQSERNSNLARFRASAARILVATDVASRGLDIPSVSLVINFDVPRNPDDYVHRVGRTAR  361

Query  609  AERMGLAISLVATEKEKVWYHV  630
            A R G A++LV     ++   +
Sbjct  362  AGRHGEAVTLVGQRDVQLVLAI  383


 Score = 95.6 bits (236),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 20/138 (14%)

Query  5    SEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIV  64
            + + V P +  ++  M    PT IQ   IP IL G D +  + TGSGKT AF++P++Q  
Sbjct  16   TTLNVSPWLVGSLTTMAVRKPTAIQKACIPEILKGRDCIGGSRTGSGKTIAFAVPILQKW  75

Query  65   YETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI----------GSDGLCCQSR  114
             +                   +   +  +  Y++  A +           G   +  Q+ 
Sbjct  76   AQ---------DPFGIFAVVLTPTRELALQIYEQIKAISAPQSMKPLLITGGTDMRSQAL  126

Query  115  EVKEW-HGCRATKGLMKG  131
             + +  H   AT G +  
Sbjct  127  ALSQRPHVVIATPGRLAD  144


>sp|A2QUY7|DBP5_ASPNC ATP-dependent RNA helicase dbp5 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=dbp5 PE=3 SV=1
Length=482

 Score = 279 bits (714),  Expect = 1e-84, Method: Composition-based stats.
 Identities = 106/477 (22%), Positives = 196/477 (41%), Gaps = 86/477 (18%)

Query  199  DKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVAL  258
                +   KN +DLGL   I   +          ++   L    G       P    V  
Sbjct  66   PNNPLFSVKNFEDLGLDPRILQGLSAMNFRKPSKIQERALPLLLGN------PAKNLVGQ  119

Query  259  SKAPDGYIVKSQHSGNAQVTQT-KFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPK  317
            S++  G       +  +++  + + L   P+ALI+ P+RELA Q +  I+   +++D   
Sbjct  120  SQSGTGKTAAFVLNILSRLDLSSEQLQKTPQALILAPTRELARQIVGVIQVMGQFLDG--  177

Query  318  LRELLIIG-GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL  376
                L+IG  V A       +    +VVGTPG + D++    +  +++R LVLDEAD +L
Sbjct  178  ----LVIGTAVPADTGARPAKMECSVVVGTPGTVMDMIKRRIMIANKLRVLVLDEADNML  233

Query  377  S-QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED  435
              QG  D   R+   +P      + +QV++ SAT  +  V + + K       + L+ E+
Sbjct  234  DQQGLGDQCIRVKALLP------RDIQVVLFSATFPAH-VHEYASKFAPQANEITLQHEE  286

Query  436  SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGE  495
               + +  + +  +   D+    +    + T                             
Sbjct  287  LTVEGIKQLYLDCSNDEDKYQTLVNLYGLLT-----------------------------  317

Query  496  YAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERK  555
                      +  +IIF +T+     +E+  + +G          +   L G  +  +R 
Sbjct  318  ----------VGSSIIFVKTRASAQEIEKRMVAEG---------HTVASLTGGIEGSQRD  358

Query  556  QNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD-----------EKQNYVHRIG  604
              +++F+ G  + LI T+V ARGID+  V  VIN  +P+           + Q Y+HRIG
Sbjct  359  AVIDQFRAGHAKVLITTNVLARGIDVSTVSMVINYDIPEIHQPGARQRQADFQTYLHRIG  418

Query  605  RVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE  661
            R GR  R+G++IS V+  +E   + + +   +  +NT ++       W    +++ +
Sbjct  419  RTGRFGRVGVSISFVSNREE---WEMLNQIQR-YFNTNIQR-IDTKDWDEVEEIIKK  470


 Score = 88.3 bits (217),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 30/145 (21%), Positives = 57/145 (39%), Gaps = 14/145 (10%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            +  F ++G+ P I Q +  M++  P+ IQ  ++PL+LG    +++  +++G+GKT AF +
Sbjct  73   VKNFEDLGLDPRILQGLSAMNFRKPSKIQERALPLLLGNPAKNLVGQSQSGTGKTAAFVL  132

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKE  118
             ++  +  + +  Q     KT      +   +                DGL   +     
Sbjct  133  NILSRLDLSSEQLQ-----KTPQALILAPTRELARQIVGVIQVMGQFLDGLVIGT-----  182

Query  119  WHGCRATKGLMKGKHYYEVSCHDQG  143
                 A  G    K    V     G
Sbjct  183  --AVPADTGARPAKMECSVVVGTPG  205


>sp|Q5ACK7|DRS1_CANAL ATP-dependent RNA helicase DRS1 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DRS1 
PE=3 SV=1
Length=613

 Score = 283 bits (724),  Expect = 1e-84, Method: Composition-based stats.
 Identities = 105/468 (22%), Positives = 182/468 (39%), Gaps = 78/468 (17%)

Query  216  FEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIV---KSQHS  272
            +E     +    F    L    LK    E +F  P      ++  A  G  +       S
Sbjct  120  YEESSPQQTHTSFQTLQLSRPVLK-GIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGS  178

Query  273  GNAQVTQTKFLPN-------APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
            G         +         + K +I+ P+RELA Q     K+   +++N  L   L +G
Sbjct  179  GKTGAYMIPIIERLLYKPSTSTKVIILTPTRELALQVYEFGKKLSHHVNN--LNIGLAVG  236

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            G+  R Q   L+   DIV+ TPGRL D + ++   ++  ++ LV+DEAD +L +G+ D +
Sbjct  237  GLNLRQQEEQLKTRPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDEL  296

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
              + + IP+      + Q ++ SAT+++  ++ L +  +  P  + +    SV   +   
Sbjct  297  TEILSLIPK-----HKRQTLLFSATMNTR-IQDLIQLSLQKPVRIMIDPPKSVASKLLQQ  350

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
             V +  +       L +                                       + + 
Sbjct  351  FVRIRKRDQLKPALLYQ---------------------------------------LLKG  371

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
               + ++F   K     L       G              LHG     +R QN++ FK  
Sbjct  372  VSSRVVVFVARKETAHRLRIVLGLLG---------LKVSELHGALTQEQRLQNVKNFKSL  422

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT-EK  623
            +V  LICTD+AARG+DI  +  VIN  +P   + Y+HR+GR  RA R G +I+ V    +
Sbjct  423  EVPVLICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFVGESSQ  482

Query  624  EKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTIS  671
            E+         GKG   T         + + + +  +++ E     I 
Sbjct  483  ERAIVKSAIVNGKGVAKT---------VDWKQAEETNKLLESKESVID  521


 Score = 104 bits (260),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 29/108 (27%), Positives = 53/108 (49%), Gaps = 8/108 (7%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +F  + +   + + + E+ +  PT IQ+ SIP+ L G D++  A+TGSGKTGA+ IP+I
Sbjct  130  TSFQTLQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPII  189

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGL  109
            + +          K   +T     +   +  +  Y+ G   +   + L
Sbjct  190  ERLLY--------KPSTSTKVIILTPTRELALQVYEFGKKLSHHVNNL  229


>sp|A6ZXU0|DBP10_YEAS7 ATP-dependent RNA helicase DBP10 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DBP10 PE=3 
SV=1
Length=995

 Score = 292 bits (746),  Expect = 1e-84, Method: Composition-based stats.
 Identities = 118/541 (22%), Positives = 205/541 (38%), Gaps = 73/541 (13%)

Query  195  YLDIDKGHVKFSKN-----------GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFG  243
              D D  +  FS N               GL+  +  ++K +       ++   +     
Sbjct  114  GDDEDDVNEYFSTNNLEKTKHKKGSFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLIL-  172

Query  244  EEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTL  303
                        V +++   G           ++        A +A+I+ PSRELA QT 
Sbjct  173  -------QSRDIVGMARTGSGKTAAFILPMVEKLKSHSGKIGA-RAVILSPSRELAMQTF  224

Query  304  NNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQ  363
            N  K F +     +LR +L+ GG +  +Q  ++    D+++ TPGR   L     L+L  
Sbjct  225  NVFKDFAR---GTELRSVLLTGGDSLEEQFGMMMTNPDVIIATPGRFLHLKVEMNLDLKS  281

Query  364  VRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIM  423
            V ++V DEAD L   G+ + +N +   +P         Q ++ SATL +  V    +  +
Sbjct  282  VEYVVFDEADRLFEMGFQEQLNELLASLPTT------RQTLLFSATLPNSLV-DFVKAGL  334

Query  424  HFPTWVDLKGEDSVPDTVHHVVVPV-NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSP  482
              P  V L  E  V + +  + +   N   +     + +  I+     ++   +   ++ 
Sbjct  335  VNPVLVRLDAETKVSENLEMLFLSSKNADREANLLYILQEIIKIPLATSEQLQKLQNSNN  394

Query  483  EMWSEAIKILKGEYAVRAIKEHKMDQ--------------AIIFCRTKIDCDNLEQYFIQ  528
            E  S++      +   R  K+ K  +               I+F  T+   + + Q    
Sbjct  395  EADSDSDDENDRQKKRRNFKKEKFRKQKMPAANELPSEKATILFVPTRHHVEYISQLLRD  454

Query  529  QGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVI  588
             G         +    ++G    H RK+ L  F+ G    L+ TDVAARG+DI  +  VI
Sbjct  455  CG---------YLISYIYGTLDQHARKRQLYNFRAGLTSILVVTDVAARGVDIPMLANVI  505

Query  589  NVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGG  648
            N TLP   + +VHR+GR  RA   G A S+VA  +      +                  
Sbjct  506  NYTLPGSSKIFVHRVGRTARAGNKGWAYSIVAENELPYLLDLE-----------------  548

Query  649  CTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDIL  708
              ++  E  LL+ + + L   + +   D   P  +F        KR   G   +  V+ L
Sbjct  549  --LFLGEKILLTPMYDSLVDVMKKRWIDEGKPEYQFQPPKLSYTKRLVLGSCPRLDVEGL  606

Query  709  A  709
             
Sbjct  607  G  607


 Score = 106 bits (264),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 30/105 (29%), Positives = 51/105 (49%), Gaps = 7/105 (7%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F   G+   +   ++   +  PT IQ ++IPLIL   D++  A TGSGKT AF +P+++
Sbjct  138  SFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVE  197

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
             +         GK G   +    S   +  M  ++    FA G++
Sbjct  198  KLKSHS-----GKIGARAV--ILSPSRELAMQTFNVFKDFARGTE  235


>sp|A7TJT7|SUB22_VANPO ATP-dependent RNA helicase SUB2-2 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 
21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=SUB2-2 PE=3 SV=1
Length=442

 Score = 278 bits (710),  Expect = 1e-84, Method: Composition-based stats.
 Identities = 95/388 (24%), Positives = 155/388 (40%), Gaps = 63/388 (16%)

Query  250  PPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQF  309
                G   L +A  G + K+     + + Q   +P     +++  +RELA Q  N   +F
Sbjct  91   QSIHGTDVLCQAKSG-LGKTAVFVLSTLQQLDPVPGEVSVVVICNARELAYQIRNEYLRF  149

Query  310  KKYIDNPKLRELLIIGGVAARDQLSVLENG---VDIVVGTPGRLDDLVSTGKLNLSQVRF  366
             KY+  P ++  +  GG        +L+N      IVV TPGRL  LV    ++LS V+ 
Sbjct  150  SKYM--PDVKTAVFYGGTPITKDAELLKNKETAPHIVVATPGRLKALVRDKLIDLSHVKN  207

Query  367  LVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFP  426
             V+DE D +L       + R    I + T   K  QV++ SATL S +++ +  + +  P
Sbjct  208  FVIDECDKVLE---ELDMRRDVQDIFRATPRDK--QVMMFSATL-SEEIRPICRRFLQNP  261

Query  427  TWVDLKGEDS-VPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW  485
              + +  E       +    + +                                     
Sbjct  262  LEIFVDDEAKLTLHGLQQYYIKLQENE---------------------------------  288

Query  486  SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL  545
                   K     + + + + +Q IIF ++    + L +   +           F  + +
Sbjct  289  -------KNRKLAQLLDDLEFNQVIIFVKSTKRANELTKLLNE---------SNFPAITV  332

Query  546  HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR  605
            HG+ K  ER    + FK+ + R  + TDV  RGIDI  +   IN  L  E   Y+HR+GR
Sbjct  333  HGNMKQAERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDLTTEADQYLHRVGR  392

Query  606  VGRAERMGLAISLV-ATEKEKVWYHVCS  632
             GR    GLAIS V + E E+V   +  
Sbjct  393  AGRFGTKGLAISFVSSPEDEEVLGKIQE  420


 Score = 76.3 bits (186),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 45/103 (44%), Gaps = 9/103 (9%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F +  + PE+A+A+ +  +  P+++Q  +IP  + G DVL  A++G GKT  F +  +
Sbjct  58   TGFKDFLLKPELARAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTL  117

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            Q +     D   G+     I        +      +    F+ 
Sbjct  118  QQL-----DPVPGEVSVVVICNA----RELAYQIRNEYLRFSK  151


>sp|Q0INC5|RH28_ORYSJ DEAD-box ATP-dependent RNA helicase 28 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os12g0481100 PE=2 
SV=2
Length=802

 Score = 288 bits (736),  Expect = 1e-84, Method: Composition-based stats.
 Identities = 109/425 (26%), Positives = 178/425 (42%), Gaps = 61/425 (14%)

Query  262  PDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLREL  321
              G           ++        A + LI+ P+RELA Q  + I++  ++ D   +R  
Sbjct  241  GSGKTAAFSLPVLERLLFRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTD---IRCC  297

Query  322  LIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTG-KLNLSQVRFLVLDEADGLLSQGY  380
            LI+GG++ + Q   L +  DIVV TPGR+ D +     + L  +  L+LDEAD LL  G+
Sbjct  298  LIVGGLSTKVQEVALRSMPDIVVATPGRIIDHLRNSLSVGLEDLAILILDEADRLLELGF  357

Query  381  SDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDT  440
            S  I  +    P      +R Q ++ SAT+ + ++ +L    ++ P  ++       P T
Sbjct  358  SAEIQELIRMCP------RRRQTMLFSATM-TEEINELVTLSLNKPVRLEADPSLKRPAT  410

Query  441  VHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRA  500
            +   VV +    +   E +                                      +  
Sbjct  411  LTEEVVRIRRAREANQEAV-------------------------------------LLAL  433

Query  501  IKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLER  560
              +   D+ IIF  TK     L+  F   G              LHG+    +R + LE 
Sbjct  434  CLKTFKDKVIIFSGTKHSAHRLKIIFGLSG---------MKAAELHGNLTQAQRLEALEL  484

Query  561  FKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            FKK +V FLI TDVAARGIDI GV  VIN + P + + Y+HR+GR  RA R G A++ V 
Sbjct  485  FKKQEVDFLIATDVAARGIDIVGVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTFVT  544

Query  621  TEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVP  680
             +   +   +    G    +  + E           +L+ E+E+ ++  I +   +  + 
Sbjct  545  DDDRSLLKAIAKKAGSQLKSRIVAEKPVAEC----AKLIEELEDQISTIIQEEREERILR  600

Query  681  VDEFD  685
              E +
Sbjct  601  KAEME  605


 Score = 109 bits (271),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 50/109 (46%), Gaps = 6/109 (6%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F E+ +   + +A E + +  PT IQA  IPL L G D+  +A TGSGKT AFS+PV++
Sbjct  195  SFLELNLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLE  254

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
             +    K      +         +   +     +      A  +D  CC
Sbjct  255  RLLFRPK------RVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCC  297


>sp|Q9Y6V7|DDX49_HUMAN Probable ATP-dependent RNA helicase DDX49 
OS=Homo sapiens OX=9606 GN=DDX49 PE=1 SV=1
Length=483

 Score = 279 bits (713),  Expect = 1e-84, Method: Composition-based stats.
 Identities = 108/449 (24%), Positives = 176/449 (39%), Gaps = 69/449 (15%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNI  306
                     +  +K   G           ++++    P     L++ P+RELA Q     
Sbjct  34   PAILEGRDCLGCAKTGSGKTAAFVLPILQKLSED---PYGIFCLVLTPTRELAYQIAEQF  90

Query  307  KQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVST-GKLNLSQVR  365
            +   K +    L++ +I+GG+    Q   L     +V+ TPGRL D + +    ++ ++R
Sbjct  91   RVLGKPLG---LKDCIIVGGMDMVAQALELSRKPHVVIATPGRLADHLRSSNTFSIKKIR  147

Query  366  FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF  425
            FLV+DEAD LL QG +DF   +   +  V +   R Q ++ SATL    +++L     + 
Sbjct  148  FLVMDEADRLLEQGCTDFTVDLEAILAAVPA---RRQTLLFSATLTDT-LRELQGLATNQ  203

Query  426  PTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW  485
            P + + +   S  + +    + V  K    +                             
Sbjct  204  PFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLV---------------------------  236

Query  486  SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL  545
                         R   EH+    IIF  T   C  L     +           F  V L
Sbjct  237  ---------HLIQRFQDEHEDWSIIIFTNTCKTCQILCMMLRKF---------SFPTVAL  278

Query  546  HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR  605
            H   K  ER   L +FK    R LI TDVA+RG+DI  V  VIN   P   + Y+HR+GR
Sbjct  279  HSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGR  338

Query  606  VGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEH  665
              RA R G AI+LV      + + +     K      ++E          +Q+L+++   
Sbjct  339  TARAGRQGQAITLVTQYDIHLVHAIEEQIKKKLEEFSVEEA-------EVLQILTQV---  388

Query  666  LNCTISQVEPDIKVPVDEFDGKVTYGQKR  694
                + + E +IK+    FD K    +++
Sbjct  389  ---NVVRRECEIKLEAAHFDEKKEINKRK  414


 Score = 105 bits (261),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 34/142 (24%), Positives = 56/142 (39%), Gaps = 20/142 (14%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            MA F+E+G+   + +   ++    PT +Q   IP IL G D L  A+TGSGKT AF +P+
Sbjct  1    MAGFAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPI  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA----------IGSDGLC  110
            +Q + E                   +   +      ++               +G   + 
Sbjct  61   LQKLSEDPY---------GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMV  111

Query  111  CQSREVKEW-HGCRATKGLMKG  131
             Q+ E+    H   AT G +  
Sbjct  112  AQALELSRKPHVVIATPGRLAD  133


>sp|Q6BML1|PRP5_DEBHA Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 
767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 
GN=PRP5 PE=3 SV=2
Length=913

 Score = 290 bits (741),  Expect = 2e-84, Method: Composition-based stats.
 Identities = 94/420 (22%), Positives = 170/420 (40%), Gaps = 62/420 (15%)

Query  228  FPACVLKNAELKFNFGEEEFKFPPK-------DGFVALSKAPDGYIVKSQHSGNAQVTQT  280
             P+ ++   E + N+                    + ++K   G  +         +   
Sbjct  323  LPSTIMSIIEGRLNYSSPSSIQAQAIPAIMSGRDIIGVAKTGSGKTLSFVLPLLRHIQDQ  382

Query  281  KFLP--NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
              L   + P  LI+ P+RELA Q    +  F K ++   +      GG +   Q++ L+ 
Sbjct  383  PPLKKGDGPIGLIMTPTRELALQIHKELNHFTKKLN---ISSCCCFGGSSIESQIAELKK  439

Query  339  GVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
            G  I+VGTPGR+ DL++       NL +V +LVLDEAD +   G+   + ++  ++    
Sbjct  440  GAQIIVGTPGRIIDLLAANSGRVTNLQRVTYLVLDEADRMFDMGFEPQVTKVFTRV----  495

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL  455
                  Q ++ SAT     ++ L++KI+  P  + + G   V   +   V     + D+ 
Sbjct  496  --RPDRQTVLFSATFP-RKMELLAKKILDNPMEIVVGGISVVASEITQKVELFENEDDKS  552

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRT  515
             E    S + +      D                                  + +IF   
Sbjct  553  LEEAKFSKLLSTLNDYGDKDAEC-----------------------------KILIFVEK  583

Query  516  KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV--RFLICTD  573
            +I  D L    + +         ++ C+ +HG +   +RK  +  F   +     LI T 
Sbjct  584  QIAADELLVKLLTE---------KYPCLAIHGGKDQIDRKHAIREFSSSNSGVNILIATS  634

Query  574  VAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
            +AARG+D+ G+  VIN       ++YVHR+GR GRA R G AI+ V++++ +    +  +
Sbjct  635  IAARGLDVKGLNLVINYEAASHMEDYVHRVGRTGRAGRKGTAITFVSSKQGRAITDLVKA  694


 Score = 107 bits (267),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 59/114 (52%), Gaps = 7/114 (6%)

Query  1    MAAFSEMGVMPEIAQAVE-EMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
            +  +S++G+   I   +E  +++  P+ IQA++IP I+ G D++  A+TGSGKT +F +P
Sbjct  315  IIRWSQLGLPSTIMSIIEGRLNYSSPSSIQAQAIPAIMSGRDIIGVAKTGSGKTLSFVLP  374

Query  60   VIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF--AIGSDGLCC  111
            +++ +     DQ   KKG   I    +   +  +  +   + F   +     CC
Sbjct  375  LLRHIQ----DQPPLKKGDGPIGLIMTPTRELALQIHKELNHFTKKLNISSCCC  424


>sp|A1D1R8|DRS1_NEOFI ATP-dependent RNA helicase drs1 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=drs1 
PE=3 SV=1
Length=819

 Score = 288 bits (736),  Expect = 2e-84, Method: Composition-based stats.
 Identities = 104/480 (22%), Positives = 186/480 (39%), Gaps = 73/480 (15%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            ++ +D  L+  I   + +        ++   +                 V  +    G  
Sbjct  299  RSFQDFNLSRPILRGLASVNFTTPTPIQQKTIPVAL--------LGKDIVGSAVTGSGKT  350

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
                     ++          +  I+ P+RELA Q  N   +   + D   +    ++GG
Sbjct  351  AAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATHTD---ITFCQLVGG  407

Query  327  VAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
             + R+Q ++L+   D+++ TPGR +D + ++    +  +  LVLDEAD +L  G++D +N
Sbjct  408  FSLREQENILKKRPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEDGFADELN  467

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
             +   IPQ        Q ++ SAT+    V KL    ++ P  + +  + +    +    
Sbjct  468  EILTTIPQS------RQTMLFSATMTD-SVDKLIRVGLNRPVRLMVDSKKNTSMNLTQEF  520

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
            V + P   R  +RLG                                   Y +    E  
Sbjct  521  VRLRP--GREDKRLG-----------------------------------YLLYLCNEIY  543

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
              + I+F R K +   +   F   G              LHG     +R +++E F++G 
Sbjct  544  TGRVIVFFRQKREAHRVRIVFGLLG---------LKAAELHGSMSQEQRIKSVENFREGK  594

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            V FL+ TD+A+RG+DI GV  VIN   P   + Y+HR+GR  RA R G A ++ A    K
Sbjct  595  VAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRK  654

Query  626  VWYHVCSS--RGKGCYNTRLKEDGGCTIWYNEMQLLSEI------EEHLNCTISQVEPDI  677
            +      +         +R+ +      W  + + L +       EE L   ++Q E  +
Sbjct  655  IVKSAVKAGKAQGAKIVSRVVDPAVADEWAAKAKGLEDEIEEVLQEEKLEKQMAQAEMQV  714


 Score = 109 bits (271),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 54/111 (49%), Gaps = 6/111 (5%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +F +  +   I + +  +++  PT IQ ++IP+ L G D++ +A TGSGKT AF +P++
Sbjct  299  RSFQDFNLSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPIL  358

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQ  112
            + +          +K  T+         +  +  Y+  +  A  +D   CQ
Sbjct  359  ERLLFRP------RKVPTSRVAILMPTRELAVQCYNVATKLATHTDITFCQ  403


>sp|Q18212|DX39B_CAEEL Spliceosome RNA helicase DDX39B homolog 
OS=Caenorhabditis elegans OX=6239 GN=hel-1 PE=1 SV=1
Length=425

 Score = 277 bits (707),  Expect = 2e-84, Method: Composition-based stats.
 Identities = 97/414 (23%), Positives = 164/414 (40%), Gaps = 68/414 (16%)

Query  232  VLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIV---------KSQHSGNAQVTQTKF  282
             L   E+    G+  F+ P +     + +A  G  V         K+       + Q + 
Sbjct  46   FLLKPEILRAIGDCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQLEP  105

Query  283  LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN-GVD  341
            +      + +  +RELA Q     ++F KY+  P ++  +  GG+A +     L N    
Sbjct  106  VDGEVSVVCMCHTRELAFQISKEYERFSKYL--PGVKVAVFFGGMAIKKDEERLANDCPH  163

Query  342  IVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL  401
            IVVGTPGR+  L  +GKL L +V++ VLDE D ++       + R   +I ++T   K  
Sbjct  164  IVVGTPGRMLALARSGKLKLDKVKYFVLDECDKMIGDA---DMRRDVQEIVKMTPQQK--  218

Query  402  QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDS-VPDTVHHVVVPVNPKTDRLWERLG  460
            QV++ SATL   +++ + ++ M  P  V +  E       +    V +            
Sbjct  219  QVMMFSATLPK-ELRTVCKRFMQDPMEVYVDDEAKLTLHGLQQHYVKLKEAE--------  269

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
                                            K    +  +   + +Q +IF +    C+
Sbjct  270  --------------------------------KNRRLLNLLDALEFNQVVIFVKAVKRCE  297

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             L Q   +Q          F  + +H      ER    + FK    R L+ TD+  RG+D
Sbjct  298  ALHQLLTEQ---------NFPSIAIHRQMAQEERLSRYQAFKDFQKRILVATDLFGRGMD  348

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            I  V  V N  +P++  +Y+HR+ R GR    GLAI+ V+ E +    +    R
Sbjct  349  IERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITFVSDENDAKTLNSVQDR  402


 Score = 78.2 bits (191),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 37/63 (59%), Gaps = 0/63 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F +  + PEI +A+ +  +  P+++Q E IP  + G DV+  A++G GKT  F I  +
Sbjct  41   SGFRDFLLKPEILRAIGDCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTL  100

Query  62   QIV  64
            Q +
Sbjct  101  QQL  103


>sp|Q54CD8|DDX54_DICDI ATP-dependent RNA helicase ddx54 OS=Dictyostelium 
discoideum OX=44689 GN=helA PE=3 SV=1
Length=1091

 Score = 292 bits (748),  Expect = 2e-84, Method: Composition-based stats.
 Identities = 108/424 (25%), Positives = 186/424 (44%), Gaps = 44/424 (10%)

Query  228  FPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN--  285
            F +  L    LK    ++ F  P      ++    DG+ +       +  T    +P   
Sbjct  232  FQSMDLTKNLLKAIL-KKGFNVPTPIQRKSIPMILDGHDIVGMARTGSGKTGAFVIPMIQ  290

Query  286  ---------APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL  336
                       +A+I+ P+RELA QT   +K F +     +LR +LI+GG +  DQ + L
Sbjct  291  KLGDHSTTVGVRAVILSPTRELAIQTFKVVKDFSQ---GTQLRTILIVGGDSMEDQFTDL  347

Query  337  ENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTS  396
                DI++ TPGRL   +    ++LS+V+++V DEAD L   G+++ +  + +++     
Sbjct  348  ARNPDIIIATPGRLMHHLLETGMSLSKVQYIVFDEADRLFEMGFNEQLTEILSKL-----  402

Query  397  DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLW  456
              +  Q ++ SATL S  V       ++ P  ++L  +  + + +          T R  
Sbjct  403  -SENRQTLLFSATLPSLLV-DFVRAGLNNPKLINLDTDTKISENLSLSFF-----TLRHE  455

Query  457  ERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTK  516
            E+LG       D+  K         P++ +               ++ K    IIF  TK
Sbjct  456  EKLGVLLFLLKDIIYK--------KPQLPTTETTTTTTTNNESNQQQQKKSSTIIFVSTK  507

Query  517  IDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAA  576
               + +     + G          +   +HG   P  RK NL +F+   V  ++ TD+AA
Sbjct  508  YHVEFIHILLERAG---------IASTYIHGYLDPVARKINLAKFRSHQVGVMVVTDLAA  558

Query  577  RGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGK  636
            RGIDI  +  VIN   P +++ ++HR+GRV RA R G+A SLV+ ++      +    G+
Sbjct  559  RGIDIPLLDNVINFDFPPKEKIFIHRVGRVARAGRSGIAYSLVSPDEVPYMIDLHLYLGR  618

Query  637  GCYN  640
               N
Sbjct  619  KFLN  622


 Score = 100 bits (248),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 50/103 (49%), Gaps = 7/103 (7%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F  M +   + +A+ +  + +PT IQ +SIP+IL G D++  A TGSGKTGAF IP+IQ 
Sbjct  232  FQSMDLTKNLLKAILKKGFNVPTPIQRKSIPMILDGHDIVGMARTGSGKTGAFVIPMIQK  291

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            + +                   S   +  +  +     F+ G+
Sbjct  292  LGDHS-------TTVGVRAVILSPTRELAIQTFKVVKDFSQGT  327


>sp|Q6FL17|SUB2_CANGA ATP-dependent RNA helicase SUB2 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=SUB2 PE=3 SV=1
Length=439

 Score = 277 bits (708),  Expect = 2e-84, Method: Composition-based stats.
 Identities = 96/410 (23%), Positives = 160/410 (39%), Gaps = 62/410 (15%)

Query  250  PPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQF  309
                G   L +A  G + K+     + + Q   +P     +++  +RELA Q  N   +F
Sbjct  88   QSIHGTDVLCQAKSG-LGKTAVFVLSTLQQLDPVPGEVSVVVICNARELAYQIRNEYLRF  146

Query  310  KKYIDNPKLRELLIIGGVAARDQLSVLENG---VDIVVGTPGRLDDLVSTGKLNLSQVRF  366
             KY+  P +R  +  GG        +L+N      IVV TPGRL  LV    ++LS V+ 
Sbjct  147  SKYM--PDVRTAVFYGGTPIAKDAELLKNKDTAPHIVVATPGRLKALVRDKMIDLSHVKN  204

Query  367  LVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFP  426
             V+DE D +L       + R   +I + T   K  QV++ SATL S +++ +  + +  P
Sbjct  205  FVIDECDKVLE---ELDMRRDVQEIFRATPRDK--QVMMFSATL-SQEIRPICRRFLQNP  258

Query  427  TWVDLKGEDS-VPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW  485
              + +  E       +    + +  +                                  
Sbjct  259  LEIFVDDEAKLTLHGLQQYYIKLEERE---------------------------------  285

Query  486  SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL  545
                   K     + + + + +Q IIF ++    + L +               F  + +
Sbjct  286  -------KNRKLAQLLDDLEFNQVIIFVKSTSRANELTKLL---------NASNFPAITV  329

Query  546  HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR  605
            HG  K  ER    + FK  + R  + TDV  RGIDI  +   IN  L +E   Y+HR+GR
Sbjct  330  HGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLLNEADQYLHRVGR  389

Query  606  VGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNE  655
             GR    GLAIS V+ ++++        R         +E    + + N 
Sbjct  390  AGRFGTKGLAISFVSNKEDEEVLSKIQERFDVKIAEFPEEGIDPSTYLNN  439


 Score = 75.9 bits (185),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 30/144 (21%), Positives = 56/144 (39%), Gaps = 24/144 (17%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F +  + PE+++A+ +  +  P+++Q  +IP  + G DVL  A++G GKT  F +  +
Sbjct  55   TGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTL  114

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI-----------GSDGLC  110
            Q +     D   G+     I        +      +    F+            G   + 
Sbjct  115  QQL-----DPVPGEVSVVVICNA----RELAYQIRNEYLRFSKYMPDVRTAVFYGGTPIA  165

Query  111  CQSREVKEW----HGCRATKGLMK  130
              +  +K      H   AT G +K
Sbjct  166  KDAELLKNKDTAPHIVVATPGRLK  189


>sp|A1A4H6|DDX27_BOVIN Probable ATP-dependent RNA helicase DDX27 
OS=Bos taurus OX=9913 GN=DDX27 PE=2 SV=1
Length=765

 Score = 286 bits (732),  Expect = 3e-84, Method: Composition-based stats.
 Identities = 101/520 (19%), Positives = 193/520 (37%), Gaps = 78/520 (15%)

Query  205  FSKN--GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAP  262
            + +N   +D+ L+  +   +          ++ A +                  A +   
Sbjct  183  YDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGL--------LGKDICACAATG  234

Query  263  DGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
             G           ++          + L++ P+REL  Q  +  KQ  ++     +   L
Sbjct  235  TGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCS---ITTCL  291

Query  323  IIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYS  381
             +GG+  + Q + L    DI++ TPGRL D + +    +LS +  L+LDEAD +L + + 
Sbjct  292  AVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFE  351

Query  382  DFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV  441
            + +  +              Q ++ SAT+   +VK L+   +  P  + +     V   +
Sbjct  352  EQMKEIIRMC------SHHRQTMLFSATMTD-EVKDLASVSLKNPVRIFVNSNTDVAPFL  404

Query  442  HHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI  501
                + + P  +   E +  +                                      +
Sbjct  405  RQEFIRIRPNREGDREAIVAA-------------------------------------LL  427

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
                 D  ++F +TK     +       G              LHG+    +R + L RF
Sbjct  428  MRTFTDHVMLFTQTKKQAHRMHILLGLMG---------LQVGELHGNLSQTQRLEALRRF  478

Query  562  KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT  621
            K   +  L+ TDVAARG+DI GV  VIN T+P+  ++YVHR+GR  RA R G ++SLV  
Sbjct  479  KDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGE  538

Query  622  EKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPV  681
            E+ K+   +  +  K     R+        + ++++ + +           V   +++  
Sbjct  539  EERKMLKEIVKA-AKAPVKARILPQDVILKFRDKIEKMEK----------DVYAVLQLEA  587

Query  682  DEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKE  721
            +E + + +  Q   A     KG         +     ++E
Sbjct  588  EEKEMQKSEAQINTAQRLLEKGKEAPNPEPERSWFQTKEE  627


 Score = 106 bits (264),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 28/123 (23%), Positives = 52/123 (42%), Gaps = 9/123 (7%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F +M +   + +A+  M +  PT IQ   IP+ L G D+   A TG+GKT AF++PV++
Sbjct  188  SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE  247

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY---DRGSAFAIGSDGLCCQSREVKEW  119
             +          ++   T         +  +  +    + + F   +  L     +VK  
Sbjct  248  RLIYKP------RQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQ  301

Query  120  HGC  122
               
Sbjct  302  EAA  304


>sp|Q9FZ92|RH44_ARATH Putative DEAD-box ATP-dependent RNA helicase 
44 OS=Arabidopsis thaliana OX=3702 GN=RH44 PE=5 SV=2
Length=622

 Score = 282 bits (722),  Expect = 3e-84, Method: Composition-based stats.
 Identities = 92/412 (22%), Positives = 161/412 (39%), Gaps = 70/412 (17%)

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN-----APKALIVEPS  295
            N+ E       +   + +S    G          A +++   +        P AL++ P+
Sbjct  236  NWEETIPLGLEQRDVIGISATGSGKTAAFVLPMLAYISRLPPMREENQTEGPYALVMVPT  295

Query  296  RELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVS  355
            RELA Q      +F +Y+     + + I G  +   Q   L  G +IV+ TPGRL D + 
Sbjct  296  RELAHQIEEETVKFSRYLG---FKAVSITGWESIEKQALKLSQGCEIVIATPGRLLDCLE  352

Query  356  TGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR-----------LQVI  404
               + L+Q  +LVLDEAD ++   +   ++ + + +P      ++               
Sbjct  353  RRYVVLNQCNYLVLDEADRMIDMDFEPQVSEVLDVMPCSNLKPEKEDEELEEKKIYRTTY  412

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT+    V++L+ K +  P  V +         +   V+                  
Sbjct  413  MFSATML-LSVERLARKFLRNPVVVTIG---ETTKFITQQVI------------------  450

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                               M  E+ K  + +  +  + + K   AI+F  T+   D + +
Sbjct  451  -------------------MTKESDKFSRLKKLIDDLGDDKT--AIVFVNTRNKVDYIVK  489

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
               + G              LH  +   +R  +LE FKK     L+ TDV  RG+DI  +
Sbjct  490  NLEKVGRC--------RVTTLHAGKSQEQRDYSLEEFKKKRFNVLVTTDVLGRGLDILDL  541

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGK  636
              VIN  +P+    Y HRIGR GRA + G+A + +  E + V+Y +     +
Sbjct  542  AQVINYDMPNTMDLYTHRIGRTGRAGKTGVATTFLTLEDKDVFYGLKQKLNE  593


 Score = 67.5 bits (163),  Expect = 2e-10, Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 37/95 (39%), Gaps = 4/95 (4%)

Query  30   AESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLN  89
             E+IPL L   DV+  + TGSGKT AF +P++  +   L   +E  + +           
Sbjct  238  EETIPLGLEQRDVIGISATGSGKTAAFVLPMLAYISR-LPPMREENQTEGPYALVMVPTR  296

Query  90   KWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRA  124
            +      +    F+     L  ++  +  W     
Sbjct  297  ELAHQIEEETVKFSRY---LGFKAVSITGWESIEK  328


>sp|Q9ZRZ8|RH28_ARATH DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis 
thaliana OX=3702 GN=RH28 PE=2 SV=1
Length=789

 Score = 287 bits (733),  Expect = 3e-84, Method: Composition-based stats.
 Identities = 111/425 (26%), Positives = 177/425 (42%), Gaps = 61/425 (14%)

Query  262  PDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLREL  321
              G           ++        A + LI+ P+RELA Q  + I+   ++ D   ++  
Sbjct  214  GSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTD---IKCG  270

Query  322  LIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGY  380
            LI+GG++ R+Q  VL +  DIVV TPGR+ D + ++  ++L  +  L+LDEAD LL  G+
Sbjct  271  LIVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGF  330

Query  381  SDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDT  440
            +  I  +    P      KR Q ++ SAT+ + +VK+L +  ++ P  +        P  
Sbjct  331  ATEITELVRLCP------KRRQTMLFSATM-TEEVKELVKLSLNKPLRLSADPSARRPPG  383

Query  441  VHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRA  500
            +   VV +    +   E +                                      +  
Sbjct  384  LTEEVVRIRRTREANQEAV-------------------------------------LLSL  406

Query  501  IKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLER  560
                   + IIF  TK     L+  F   G              LHG+    +R  +LE 
Sbjct  407  CTRTFKSKVIIFSGTKQAAHRLKILFGLAG---------LKAAELHGNLTQAQRLDSLEL  457

Query  561  FKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            F+K +V FLI TDVAARG+DI GV  VIN   P E  +YVHR+GR  RA R G A++ V 
Sbjct  458  FRKQEVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVT  517

Query  621  TEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVP  680
                 +   +    G    +  + E           Q++ E+E+  +  IS    +  + 
Sbjct  518  DSDRSLLKVIAKKVGSKLKSRVIPEQSIVKW----SQIIDEMEDQYSAVISAERDERALR  573

Query  681  VDEFD  685
              E +
Sbjct  574  KAEME  578


 Score = 104 bits (258),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 33/123 (27%), Positives = 53/123 (43%), Gaps = 9/123 (7%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F E+ +   + +A E + +  PT IQA  IPL L G D+  +A TGSGKT AF++P ++
Sbjct  168  TFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLE  227

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD---GLCCQSREVKEW  119
             +    K      +   T     +   +  +  +      A  +D   GL      V+E 
Sbjct  228  RLLFRPK------RVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQ  281

Query  120  HGC  122
               
Sbjct  282  EVV  284


>sp|Q75C39|DBP5_EREGS ATP-dependent RNA helicase DBP5 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DBP5 PE=3 SV=2
Length=466

 Score = 277 bits (709),  Expect = 3e-84, Method: Composition-based stats.
 Identities = 107/461 (23%), Positives = 184/461 (40%), Gaps = 78/461 (17%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K+ ++LGLA E+   +          ++   L                 +A S++  G  
Sbjct  77   KSFEELGLAPELLKGLYAMKFQKPSKIQERALPLLLHNPP------RNMIAQSQSGTGKT  130

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
                 +    +++      A +A+ + PSRELA QTL  I++  K+    K+   LI+  
Sbjct  131  AAFSLT---MLSRVDVAVPATQAICLAPSRELARQTLEVIQEMGKF---TKIASQLIVPD  184

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLS-QGYSDFIN  385
               +++         I+VGTPG + DL+    + L +V+  VLDEAD +L  QG  D   
Sbjct  185  SYEKNKAI----NAHIIVGTPGTVLDLMRRKMIQLGKVKTFVLDEADNMLDKQGLGDQCI  240

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
            R+   +P      K  Q+++ SAT     V++ + +++     ++L+  +     +  + 
Sbjct  241  RVKKFLP------KDTQLVLFSATF-DDSVREYARRVVPNANSLELQRNEVNVSAIKQLF  293

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
            +  N +  +                                    +L   Y +  I    
Sbjct  294  MDCNDERHKFT----------------------------------VLCDLYGLLTI----  315

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
               +IIF +TK   + L     ++G              LHGD +  +R + +  F++G 
Sbjct  316  -GSSIIFVQTKQTANMLYTELKREG---------HQVSILHGDLQSADRDRLIGDFREGR  365

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLP------DEKQNYVHRIGRVGRAERMGLAISLV  619
             + LI T+V ARGIDI  V  V+N  LP       +   YVHRIGR GR  R G+AIS +
Sbjct  366  SKVLITTNVLARGIDIPTVSMVVNYDLPMTANGQPDPSTYVHRIGRTGRFGRTGVAISFI  425

Query  620  ATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660
              +K         S       T++  D    +     ++L 
Sbjct  426  HDKKSYETLAAIQSYFGDIQITKVPTDDMDEMEKIVKKVLK  466


 Score = 86.7 bits (213),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 27/129 (21%), Positives = 60/129 (47%), Gaps = 4/129 (3%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            + +F E+G+ PE+ + +  M +  P+ IQ  ++PL+L     +++  +++G+GKT AFS+
Sbjct  76   VKSFEELGLAPELLKGLYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSL  135

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKE  118
             ++  V   +   Q      +      ++    +M  + + ++  I  D    +  +   
Sbjct  136  TMLSRVDVAVPATQAICLAPSRELARQTLEVIQEMGKFTKIASQLIVPD--SYEKNKAIN  193

Query  119  WHGCRATKG  127
             H    T G
Sbjct  194  AHIIVGTPG  202


>sp|A7TLA0|SUB21_VANPO ATP-dependent RNA helicase SUB2-1 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 
21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=SUB2-1 PE=3 SV=1
Length=441

 Score = 277 bits (707),  Expect = 3e-84, Method: Composition-based stats.
 Identities = 97/415 (23%), Positives = 160/415 (39%), Gaps = 71/415 (17%)

Query  232  VLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY---------IVKSQHSGNAQVTQTKF  282
             L   EL     +  F+ P +     + ++  G          + K+     + + Q   
Sbjct  62   FLLKPELARAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDP  121

Query  283  LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG---  339
            +P     +++  +RELA Q  N   +F KY+  P ++  +  GG        +L+N    
Sbjct  122  VPGEVSVVVICNARELAYQIRNEYLRFSKYM--PDVKTAVFYGGTPINKDAELLKNKETA  179

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
              IVV TPGRL  LV    ++LS V+  V+DE D +L       + R    I + T   K
Sbjct  180  PHIVVATPGRLKALVRDKLIDLSHVKNFVIDECDKVLE---ELDMRRDVQDIFRATPRDK  236

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDS-VPDTVHHVVVPVNPKTDRLWER  458
              QV++ SATL S +++ +  + +  P  + +  E       +      +          
Sbjct  237  --QVMMFSATL-SEEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYTKLQENE------  287

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
                                              K     + + + + +Q IIF ++   
Sbjct  288  ----------------------------------KNRKLAQLLDDLEFNQVIIFVKSTKR  313

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
             + L +   +           F  + +HG  K  ER    + FK+ + R  + TDV  RG
Sbjct  314  ANELTKLLNE---------SNFPAITVHGHMKQAERIARYKAFKEFEKRICVSTDVFGRG  364

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV-ATEKEKVWYHVCS  632
            IDI  +   IN  L  E   Y+HR+GR GR    GLAIS V + E E+V   +  
Sbjct  365  IDIERINLAINYDLTTEADQYLHRVGRAGRFGTKGLAISFVSSPEDEEVLGKIQE  419


 Score = 76.3 bits (186),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 45/103 (44%), Gaps = 9/103 (9%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F +  + PE+A+A+ +  +  P+++Q  +IP  + G DVL  A++G GKT  F +  +
Sbjct  57   TGFKDFLLKPELARAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTL  116

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            Q +     D   G+     I        +      +    F+ 
Sbjct  117  QQL-----DPVPGEVSVVVICNA----RELAYQIRNEYLRFSK  150


>sp|A5E6W6|RRP3_LODEL ATP-dependent rRNA helicase RRP3 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=RRP3 PE=3 SV=1
Length=504

 Score = 278 bits (712),  Expect = 3e-84, Method: Composition-based stats.
 Identities = 105/442 (24%), Positives = 178/442 (40%), Gaps = 71/442 (16%)

Query  236  AELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP---------NA  286
             EL  +    ++  P      A+  A  G  +       +  T    +P           
Sbjct  107  PELLESIQSLKYTQPTPIQAAAIPHALQGKDIVGIAETGSGKTAAFAIPILQTLYTAAQP  166

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
              AL++ P+RELA Q             +  LR + IIGG++  +Q   L     +++ T
Sbjct  167  YYALVLAPTRELAFQIKETFDALG---SSMGLRSVCIIGGMSMMEQARDLMRKPHVIIAT  223

Query  347  PGRLDDLVS-TGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            PGRL D +  T   +L ++++LV+DE D ++   Y+  I+++  QIP       +    +
Sbjct  224  PGRLIDHLEHTKGFSLKKLQYLVMDEVDRMIDLDYAKAIDQILKQIP-----SHQRITYL  278

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             +AT+ S +++K  ++ ++ P  V++   + VPD +   +   +P T             
Sbjct  279  YTATM-SREIEKF-KRSLNSPVQVEIVKLEKVPDKLKQTMCLTSPNT-------------  323

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                                       K    ++ +    M + IIF RT +        
Sbjct  324  ---------------------------KDTRLIQIVNLDSMKRVIIFTRTVVHTRRCCLM  356

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
             +  G         F CV LHG      R   + +FK G    L+ TDVAARG+DI  V 
Sbjct  357  LLNLG---------FKCVELHGQMPQSRRLGAINKFKAG-TPILVATDVAARGLDIPAVD  406

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
             VIN  +P +   Y+HR+GR  RA + G AISLV     + +  + ++ G       L  
Sbjct  407  LVINYDIP-DPTLYIHRVGRTARAGKAGKAISLVTQYDLESYLRIENTLGTKLPKEDLPL  465

Query  646  DGGCTIWYNEMQLLSEIEEHLN  667
            D    +  +  + LS+  + L 
Sbjct  466  DEMQGLQVSVDRALSKAIQMLR  487


 Score = 103 bits (257),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 47/65 (72%), Gaps = 0/65 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F+E  ++PE+ ++++ + +  PT IQA +IP  L G D++  AETGSGKT AF+IP+
Sbjct  97   VQSFTEFDLVPELLESIQSLKYTQPTPIQAAAIPHALQGKDIVGIAETGSGKTAAFAIPI  156

Query  61   IQIVY  65
            +Q +Y
Sbjct  157  LQTLY  161


>sp|A3GH91|DBP5_PICST ATP-dependent RNA helicase DBP5 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DBP5 PE=3 SV=2
Length=500

 Score = 278 bits (712),  Expect = 3e-84, Method: Composition-based stats.
 Identities = 104/471 (22%), Positives = 186/471 (39%), Gaps = 82/471 (17%)

Query  199  DKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVAL  258
                +   K+ ++LGL  E+   +          ++   L                 +  
Sbjct  102  PNSPLFSVKSFEELGLTPELLKGLYAMKFNKPSKIQEKALPLLISNPP------RNMIGQ  155

Query  259  SKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKL  318
            S++  G       +    +++      + + L + P+RELA QTL  I    K+ +   +
Sbjct  156  SQSGTGKTAAFSLT---MLSRVDPKVPSTQCLCLAPTRELARQTLEVISTMGKFTN---I  209

Query  319  RELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLS-  377
               LI+     R           I+VGTPG + DL+   ++N++ V+  VLDEAD +L  
Sbjct  210  TTQLIVPDALPRGS----STNAHIIVGTPGIVMDLIRRKQINVNGVKVFVLDEADNMLDA  265

Query  378  QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSV  437
            QG  D   R+   +P+ T      Q+++ SAT  +  V++ +EK +     ++LK E+  
Sbjct  266  QGLGDQCVRVKRTLPKTT------QLVLFSATFPT-KVRQYAEKFVPNANSLELKQEELN  318

Query  438  PDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYA  497
             D +  + +  + +  +                                   ++L   Y 
Sbjct  319  VDGIKQLYMDCDSEKHKF----------------------------------EVLCELYG  344

Query  498  VRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQN  557
            +  I       +IIF   K   + L      +G          +C  LHG  +  ER + 
Sbjct  345  LLTI-----GSSIIFVERKDTANLLYAKMKAEG---------HACSILHGGLETSERDRL  390

Query  558  LERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD------EKQNYVHRIGRVGRAER  611
            ++ F++G  + LI T+V ARGIDI  V  V+N  LP       +   Y+HRIGR GR  R
Sbjct  391  IDDFREGRSKVLITTNVLARGIDIASVSMVVNYDLPTDKDGNADPSTYLHRIGRTGRFGR  450

Query  612  MGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEI  662
            +G++IS +  ++                 TR+  D     W    +++ ++
Sbjct  451  VGVSISFIYDKRSYEILMKIKDYFGNVEMTRVPTD----DWDEVEKIVKKV  497


 Score = 92.1 bits (227),  Expect = 4e-18, Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 59/130 (45%), Gaps = 4/130 (3%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            + +F E+G+ PE+ + +  M +  P+ IQ +++PL++     +++  +++G+GKT AFS+
Sbjct  109  VKSFEELGLTPELLKGLYAMKFNKPSKIQEKALPLLISNPPRNMIGQSQSGTGKTAAFSL  168

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKE  118
             ++  V   +   Q      T      ++     M  +   +   I  D L   S     
Sbjct  169  TMLSRVDPKVPSTQCLCLAPTRELARQTLEVISTMGKFTNITTQLIVPDALPRGSST--N  226

Query  119  WHGCRATKGL  128
             H    T G+
Sbjct  227  AHIIVGTPGI  236


>sp|Q6CJV1|DRS1_KLULA ATP-dependent RNA helicase DRS1 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DRS1 PE=3 SV=1
Length=748

 Score = 285 bits (729),  Expect = 4e-84, Method: Composition-based stats.
 Identities = 88/439 (20%), Positives = 168/439 (38%), Gaps = 64/439 (15%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K    L L+  +   + +        +++A +                 +A +    G  
Sbjct  233  KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIAL--------LGKDIIAGAVTGSGKT  284

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
                     ++        + + +++ P+RELA Q  +  K   K+++   L   L +GG
Sbjct  285  AAFMIPIIERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNG--LTFGLAVGG  342

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            +  R Q   L+   DIV+ TPGR  D + ++   ++  V  LV+DEAD +L +G+ + + 
Sbjct  343  LNLRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQ  402

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
             + + IP       + Q ++ SAT++S  +K+L    +  P  + +       D +    
Sbjct  403  EIMSLIP------SKRQTLLFSATMNS-KIKQLISLSLKKPVRIMIDPPKQAADKLTQEF  455

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
            + +  +       L +                                    +R +    
Sbjct  456  IRIRKRDHLKPALLYQ-----------------------------------LIRKLDNTS  480

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
              + ++F   K     L       G              LHG     +R Q++  FK   
Sbjct  481  QKRIVVFVARKETAHKLRIVLGLLG---------MQVGELHGSLTQEQRLQSVNNFKSLQ  531

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV--ATEK  623
            V  LICTD+A+RG+DI  +  VIN  +P   + Y+HR+GR  RA R G +++ V  +++ 
Sbjct  532  VPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQD  591

Query  624  EKVWYHVCSSRGKGCYNTR  642
              +      S  +   + +
Sbjct  592  RSIVRSAIRSVEENAESGK  610


 Score = 102 bits (254),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 6/108 (6%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F+ + +   + + +  + +  P+ IQ+ +IP+ L G D++  A TGSGKT AF IP+I
Sbjct  233  KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII  292

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGL  109
            + +              +T     +   +  +   D G       +GL
Sbjct  293  ERLLYKPAHI------ASTRVVVLTPTRELAIQVADVGKNIGKFVNGL  334


>sp|Q2UQI6|DRS1_ASPOR ATP-dependent RNA helicase drs1 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=drs1 
PE=3 SV=2
Length=820

 Score = 287 bits (733),  Expect = 4e-84, Method: Composition-based stats.
 Identities = 110/482 (23%), Positives = 193/482 (40%), Gaps = 70/482 (15%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K+ ++  L+  I   +          ++   +                 V  +    G  
Sbjct  302  KSFQEFNLSRPILRGLAAVNFTNPTPIQRKTIPVAL--------LGKDIVGSAVTGSGKT  353

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
                     ++          +  I+ P+RELA Q  N   +   Y D   +    ++GG
Sbjct  354  AAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTD---ITFCQLVGG  410

Query  327  VAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
             + R+Q ++L+   D+++ TPGR +D + ++    +  +  LVLDEAD +L  G++D +N
Sbjct  411  FSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELN  470

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
             +   IP      K  Q ++ SAT+    V KL    ++ P  + +  + +    +    
Sbjct  471  EILTTIP------KSRQTMLFSATMTD-SVDKLIRVGLNRPVRLMVDSKKNTSMNLIQEF  523

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
            V + P   R  +RLG                                   Y +   KE  
Sbjct  524  VRLRP--GREDKRLG-----------------------------------YLLHLCKEVY  546

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
              + I+F R K +   +   F   G              LHG     +R +++E F++G 
Sbjct  547  TGRVIVFFRQKKEAHRVRIAFGLLG---------LKAAELHGSMSQEQRIRSVENFREGK  597

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            V FL+ TD+AARG+DI GV  VIN   P   + Y+HR+GR  RA R G A ++ A    K
Sbjct  598  VSFLLATDLAARGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRK  657

Query  626  VWY-HVCSSRGKGCY-NTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDE  683
            V    V +S+ +G    +R+ +      W    Q   ++EE +N  + + + + ++   E
Sbjct  658  VVKAAVKASKAQGAKVASRVVDPAVADRW---AQKAKDLEEEINAVLEEEKIEKQLAQAE  714

Query  684  FD  685
              
Sbjct  715  MQ  716


 Score = 107 bits (268),  Expect = 8e-23, Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 54/111 (49%), Gaps = 6/111 (5%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +F E  +   I + +  +++  PT IQ ++IP+ L G D++ +A TGSGKT AF +P++
Sbjct  302  KSFQEFNLSRPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPIL  361

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQ  112
            + +          +K  T+         +  +  Y+  +  A  +D   CQ
Sbjct  362  ERLLFRP------RKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQ  406


>sp|Q6FKN8|DBP5_CANGA ATP-dependent RNA helicase DBP5 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP5 PE=3 SV=1
Length=504

 Score = 278 bits (712),  Expect = 4e-84, Method: Composition-based stats.
 Identities = 112/462 (24%), Positives = 183/462 (40%), Gaps = 78/462 (17%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K+  +LGL+ E+   +          ++   L                 +A S++  G  
Sbjct  114  KSFDELGLSPELLKGIYAMKFQKPSKIQERALPLLLSNPP------RNMIAQSQSGTGKT  167

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
                 +    +++     N P+A+ + PSRELA QTL  I++  KY    K+   LI+  
Sbjct  168  AAFSLT---MLSRVDETQNVPQAICLAPSRELARQTLEVIQEMGKY---TKITTQLIVPD  221

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLS-QGYSDFIN  385
               ++     +   ++VVGTPG L DL+    + L  V+  VLDEAD +L  QG  D   
Sbjct  222  SFEKNT----KINANVVVGTPGTLLDLIRRKLIQLQNVKIFVLDEADNMLDKQGLGDQCI  277

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
            R+   +P      K  Q+++ SAT     VK  ++K++     ++L+  +     +  + 
Sbjct  278  RVKKFLP------KDTQLVLFSATFADA-VKAYAQKVIPNANTLELQRNEVNVKAIKQLY  330

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
            +  N +  +                                   ++L   Y +  I    
Sbjct  331  MDCNDEAHK----------------------------------YEVLCELYGLLTI----  352

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
               +IIF   K   + L      +G              LH D +  ER + ++ F++G 
Sbjct  353  -GSSIIFVAKKDTANLLYGKLKHEG---------HQVSILHSDLRTDERDRLIDDFREGR  402

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPD------EKQNYVHRIGRVGRAERMGLAISLV  619
             + LI T+V ARGIDI  V  V+N  LP       +   YVHRIGR GR  R G+AIS V
Sbjct  403  SKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGMPDYATYVHRIGRTGRFGRTGVAISFV  462

Query  620  ATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE  661
              +K            K    TR+  D    +     ++L +
Sbjct  463  HDKKSFKILSAIQDYFKDIELTRVPTDDWDEVEDIVKKVLKQ  504


 Score = 92.5 bits (228),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 57/116 (49%), Gaps = 2/116 (2%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            + +F E+G+ PE+ + +  M +  P+ IQ  ++PL+L     +++  +++G+GKT AFS+
Sbjct  113  VKSFDELGLSPELLKGIYAMKFQKPSKIQERALPLLLSNPPRNMIAQSQSGTGKTAAFSL  172

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSR  114
             ++  V ET    Q      +      ++    +M  Y + +   I  D     ++
Sbjct  173  TMLSRVDETQNVPQAICLAPSRELARQTLEVIQEMGKYTKITTQLIVPDSFEKNTK  228


>sp|A3LQ55|PRP5_PICST Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Scheffersomyces stipitis (strain ATCC 58785 / 
CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=PRP5 PE=3 
SV=2
Length=875

 Score = 288 bits (736),  Expect = 5e-84, Method: Composition-based stats.
 Identities = 99/425 (23%), Positives = 174/425 (41%), Gaps = 59/425 (14%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNA--PKALIVEPSRELAEQTLN  304
                     + ++K   G  +         +     L +   P  LI+ P+RELA Q   
Sbjct  305  PAIMSGRDIIGVAKTGSGKTLSFVLPMLRHIQDQPDLKDGEGPIGLILSPTRELAVQIHK  364

Query  305  NIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGK---LNL  361
             I  F K +    +      GG     Q++ L+ G  I+VGTPGR+ +L++       NL
Sbjct  365  EITNFTKRLG---MTACCCYGGSPIESQIAELKKGAQILVGTPGRIIELLAANSGRITNL  421

Query  362  SQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEK  421
             +V ++VLDEAD +   G+   + ++ +QI          Q ++ SAT     ++ L+++
Sbjct  422  RRVTYVVLDEADRMFDLGFEPQVTKISSQI------RPESQTVLFSATFP-RKIELLAKR  474

Query  422  IMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANS  481
            +++ P  + + G   V   +   V                                   S
Sbjct  475  LLYNPLEIIVGGISVVASEITQKV----------------------------ELFEKGES  506

Query  482  PEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFS  541
             ++  E    L     V +I E K  + +IF   +   D+L    +         G    
Sbjct  507  SQLEDEKFDRLLNILNVFSI-ESKHSKVLIFVEKQSAADDLLVKLL---------GSNHP  556

Query  542  CVCLHGDRKPHERKQNLERF--KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNY  599
            C+ +HG +   +RK  ++ F  K   V  LI T +AARG+D+ G+  VIN   P+  ++Y
Sbjct  557  CLTIHGGKDQIDRKYAIKEFSSKDSGVDILIATSIAARGLDVKGLDLVINYDPPNHMEDY  616

Query  600  VHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLL  659
            VHR+GR GRA   G AI+ V++++E+    +     +    +++ ED   +         
Sbjct  617  VHRVGRTGRAGMKGTAITFVSSDQERSVTDLV----RAMTMSKIPEDEIPSRLIEIRNQF  672

Query  660  SEIEE  664
             E  +
Sbjct  673  LEKVK  677


 Score = 104 bits (259),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 57/112 (51%), Gaps = 5/112 (4%)

Query  1    MAAFSEMGVMPEIAQAVE-EMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
            +  +S +G+       +E ++++  PT IQ++++P I+ G D++  A+TGSGKT +F +P
Sbjct  271  VLKWSHLGLPASYMNIIEDKLEYKAPTSIQSQALPAIMSGRDIIGVAKTGSGKTLSFVLP  330

Query  60   VIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
            +++ +     DQ + K G+  I    S   +  +  +   + F        C
Sbjct  331  MLRHIQ----DQPDLKDGEGPIGLILSPTRELAVQIHKEITNFTKRLGMTAC  378


>sp|Q8SR63|RRP3_ENCCU ATP-dependent rRNA helicase RRP3 OS=Encephalitozoon 
cuniculi (strain GB-M1) OX=284813 GN=RRP3 PE=3 SV=1
Length=400

 Score = 275 bits (702),  Expect = 5e-84, Method: Composition-based stats.
 Identities = 92/418 (22%), Positives = 162/418 (39%), Gaps = 64/418 (15%)

Query  256  VALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDN  315
            +A+S+   G  +       + + Q      +   L+V P+REL+ Q       F+     
Sbjct  42   IAVSQTGSGKTLAFVLPIVSHLLQ---KNRSFYCLVVAPTRELSSQIAECFNMFQA----  94

Query  316  PKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLD-DLVSTGKLNLSQVRFLVLDEADG  374
              LR  L++GG     Q + L     +VVGTPGR+   ++ T      +VR  VLDEAD 
Sbjct  95   TGLRVCLLVGGANFNVQANQLSKRPHVVVGTPGRIAEHVLKTKSFRTERVRKFVLDEADR  154

Query  375  LLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE  434
               Q + + +  +      + S  ++ Q ++ +AT+ S ++ KLS  I+  P  +    +
Sbjct  155  FFEQDFVEDLETI------IPSLREKRQTLLFTATM-SDEISKLSSSILKRPKTIRTAEK  207

Query  435  DSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG  494
                  +    + V  K                                         K 
Sbjct  208  YETVPALKEYYLFVAMK----------------------------------------WKN  227

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
               V  ++  +    I+F    +    +     + G         F    LHG+    +R
Sbjct  228  SALVELLEMSQGMSVIVFVSMCVTARVMSLALARLG---------FCSEALHGELSQEKR  278

Query  555  KQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGL  614
            ++ +  FK+     L+CTD+ +RG+DI  V  VIN  +P   ++Y+HR+GR  RA R G 
Sbjct  279  EEAMRSFKESRFNVLVCTDLGSRGLDISHVDLVINFDVPKSGKDYIHRVGRTARAGRSGT  338

Query  615  AISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQ  672
            AI+LV     +    +  +  K     ++ +    TI     + + E +E L     +
Sbjct  339  AITLVTQYDVEQIQKIEFTLEKKLEEFKMMKKNFGTICARIEEAIQEAQETLKEERKR  396


 Score = 88.6 bits (218),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 50/107 (47%), Gaps = 9/107 (8%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F ++ +   + +  +E     PT++Q + IP +LGGGDV+  ++TGSGKT AF +P++  
Sbjct  3    FGDLRIDESLIKTCQEKGITRPTEVQRQVIPAVLGGGDVIAVSQTGSGKTLAFVLPIVSH  62

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLC  110
            + +         K ++      +   +      +  + F      +C
Sbjct  63   LLQ---------KNRSFYCLVVAPTRELSSQIAECFNMFQATGLRVC  100


>sp|Q5B3H7|DBP8_EMENI ATP-dependent RNA helicase dbp8 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=dbp8 PE=3 SV=1
Length=525

 Score = 279 bits (713),  Expect = 5e-84, Method: Composition-based stats.
 Identities = 114/481 (24%), Positives = 182/481 (38%), Gaps = 74/481 (15%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             K L +A  +   +   A+     ++ A +         +       +  S+   G  + 
Sbjct  97   FKALNVAPWLVGSLTTMAVRKPTAIQRACIP--------EILKGRDCIGGSRTGSGKTIA  148

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
                    + +    P    A+I+ P+RELA Q    IK          ++ +LI GG  
Sbjct  149  FSVPI---LQKWAEDPFGIFAVILTPTRELALQIFEQIKAISA---PQSMKPVLITGGTD  202

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN----LSQVRFLVLDEADGLLSQGYSDFI  384
             R Q   L     +VV TPGRL D ++T   +    L +VR +VLDEAD LLS G    +
Sbjct  203  MRSQAIELAGRPHVVVATPGRLADHINTSGTDTVAGLKRVRMVVLDEADRLLSPGPGSML  262

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE------KIMHFPTWVDLKGEDSVP  438
              +   +  +    +  Q ++ +ATL   +V+ L        K   F T +  + +D+VP
Sbjct  263  PDVETCLSFLPGPSQ-RQTLLFTATLTP-EVRALKSMPQTPGKPPIFVTEISTEAKDTVP  320

Query  439  DTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAV  498
             T+    V V      L  R    H+                                 +
Sbjct  321  PTLRTTYVQVP-----LTHREAFLHV---------------------------------L  342

Query  499  RAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNL  558
             + + +    AI+F  T    D LE+     G              LH      ER  NL
Sbjct  343  LSTESNITKSAIVFTNTTKSADLLERLLRSLG---------HRVTSLHSLLPQSERNSNL  393

Query  559  ERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
             RF+    R L+ TDVA+RG+DI  V  V+N  +P    +YVHR+GR  RA R G A++L
Sbjct  394  ARFRASAARVLVATDVASRGLDIPSVSLVVNFEVPRNPDDYVHRVGRTARAGRTGEAVTL  453

Query  619  VATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIK  678
            V     ++   +    G+       +E         +  LL E+       + +++    
Sbjct  454  VGQRDVQLVLAIEERIGRKMVEYE-EEGVNLEARVAKGSLLKEVGAAKREAMVEIDEGRD  512

Query  679  V  679
            V
Sbjct  513  V  513


 Score = 98.3 bits (243),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 60/156 (38%), Gaps = 20/156 (13%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F  + V P +  ++  M    PT IQ   IP IL G D +  + TGSGKT AFS+P++Q
Sbjct  96   SFKALNVAPWLVGSLTTMAVRKPTAIQRACIPEILKGRDCIGGSRTGSGKTIAFSVPILQ  155

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI----------GSDGLCCQ  112
               E                   +   +  +  +++  A +           G   +  Q
Sbjct  156  KWAE---------DPFGIFAVILTPTRELALQIFEQIKAISAPQSMKPVLITGGTDMRSQ  206

Query  113  SREVK-EWHGCRATKGLMKGKHYYEVSCHDQGLCRV  147
            + E+    H   AT G +        +    GL RV
Sbjct  207  AIELAGRPHVVVATPGRLADHINTSGTDTVAGLKRV  242


>sp|Q96GQ7|DDX27_HUMAN Probable ATP-dependent RNA helicase DDX27 
OS=Homo sapiens OX=9606 GN=DDX27 PE=1 SV=2
Length=796

 Score = 286 bits (731),  Expect = 5e-84, Method: Composition-based stats.
 Identities = 99/520 (19%), Positives = 196/520 (38%), Gaps = 78/520 (15%)

Query  205  FSKN--GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAP  262
            + +N   +D+ L+  +   +          ++ A +                  A +   
Sbjct  214  YDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGL--------LGKDICACAATG  265

Query  263  DGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
             G           ++          + L++ P+REL  Q  +  +Q  ++ +   +   L
Sbjct  266  TGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCN---ITTCL  322

Query  323  IIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYS  381
             +GG+  + Q + L    DI++ TPGRL D + +    +LS +  L+LDEAD +L + + 
Sbjct  323  AVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFE  382

Query  382  DFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV  441
            + +  +              Q ++ SAT+   +VK L+   +  P  + +     V   +
Sbjct  383  EQMKEIIRMC------SHHRQTMLFSATMTD-EVKDLASVSLKNPVRIFVNSNTDVAPFL  435

Query  442  HHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI  501
                + + P  +   E +  +                                      +
Sbjct  436  RQEFIRIRPNREGDREAIVAA-------------------------------------LL  458

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
                 D  ++F +TK     +       G              LHG+    +R + L RF
Sbjct  459  TRTFTDHVMLFTQTKKQAHRMHILLGLMG---------LQVGELHGNLSQTQRLEALRRF  509

Query  562  KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT  621
            K   +  L+ TDVAARG+DI GV  VIN T+P+  ++YVHR+GR  RA R G ++SLV  
Sbjct  510  KDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGE  569

Query  622  EKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPV  681
            ++ K+   +  +  K     R+        + ++++ + +           V   +++  
Sbjct  570  DERKMLKEIVKA-AKAPVKARILPQDVILKFRDKIEKMEK----------DVYAVLQLEA  618

Query  682  DEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKE  721
            +E + + +  Q   A     KG   ++    +     ++E
Sbjct  619  EEKEMQQSEAQINTAKRLLEKGKEAVVQEPERSWFQTKEE  658


 Score = 105 bits (261),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 28/123 (23%), Positives = 52/123 (42%), Gaps = 9/123 (7%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F +M +   + +A+  M +  PT IQ   IP+ L G D+   A TG+GKT AF++PV++
Sbjct  219  SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE  278

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYD---RGSAFAIGSDGLCCQSREVKEW  119
             +          ++   T         +  +  +    + + F   +  L     +VK  
Sbjct  279  RLIYKP------RQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQ  332

Query  120  HGC  122
               
Sbjct  333  EAA  335


>sp|P21507|SRMB_ECOLI ATP-dependent RNA helicase SrmB OS=Escherichia 
coli (strain K12) OX=83333 GN=srmB PE=1 SV=1
Length=444

 Score = 276 bits (706),  Expect = 6e-84, Method: Composition-based stats.
 Identities = 108/455 (24%), Positives = 170/455 (37%), Gaps = 66/455 (15%)

Query  253  DGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNA----PKALIVEPSRELAEQTLNNIKQ  308
            DG   L  AP G   K+       +      P      P+ LI+ P+RELA Q  ++ ++
Sbjct  40   DGRDVLGSAPTG-TGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARE  98

Query  309  FKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLV  368
              K+     L    I GGVA  +   V     DIVV T GRL   +     +   V  L+
Sbjct  99   LAKHTH---LDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLI  155

Query  369  LDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTW  428
            LDEAD +L  G++  I  +  +         R Q ++ SATL    ++  +E+++  P  
Sbjct  156  LDEADRMLDMGFAQDIEHIAGE------TRWRKQTLLFSATLEGDAIQDFAERLLEDPVE  209

Query  429  VDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEA  488
            V           +H      +                                       
Sbjct  210  VSANPSTRERKKIHQWYYRADDLEH-----------------------------------  234

Query  489  IKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGD  548
                K    V  +K+ +  ++I+F R +     L  +  + G          +   L G+
Sbjct  235  ----KTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAG---------INNCYLEGE  281

Query  549  RKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
                +R + ++R  +G V  L+ TDVAARGIDI  V +V N  +P     Y+HRIGR  R
Sbjct  282  MVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTAR  341

Query  609  AERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNC  668
            A R G AISLV      +   V     +      + E    T   +E Q     ++ L  
Sbjct  342  AGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAK  401

Query  669  TISQVEPDI----KVPVDEFDGKVTYGQKRAAGGG  699
               + +       +V     D K    +++ +G G
Sbjct  402  RAEKKKAKEKEKPRVKKRHRDTKNIGKRRKPSGTG  436


 Score = 72.1 bits (175),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 51/107 (48%), Gaps = 5/107 (5%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  FSE+ +   + +A+++  +  PT IQA +IP  L G DVL +A TG+GKT A+ +P 
Sbjct  3    VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA  62

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            +Q + +  +     KK         +   +  M   D     A  + 
Sbjct  63   LQHLLDFPR-----KKSGPPRILILTPTRELAMQVSDHARELAKHTH  104


>sp|A3LNL1|PRP28_PICST Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Scheffersomyces stipitis (strain ATCC 58785 / 
CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=PRP28 PE=3 
SV=2
Length=482

 Score = 277 bits (709),  Expect = 6e-84, Method: Composition-based stats.
 Identities = 97/428 (23%), Positives = 170/428 (40%), Gaps = 60/428 (14%)

Query  227  LFPACVLKNAELKFNFGEEEFKFPPKDGF---VALSKAPDGYIVKSQHSGNAQVTQTKFL  283
                  ++ A +     + +     + G    +A       YI+ +  +      Q +  
Sbjct  77   YLEPTPIQRAAIPLALNQRDVVGIAETGSGKTLAFLIPLLSYILNTDKNYLEYEHQQEQN  136

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
             N P  LI+ P+RELA+Q     ++F    D   L  + IIGG    + +  +  GV +V
Sbjct  137  YNKPLGLILAPTRELAQQITKEAQKFG---DRLGLNVVSIIGGHQYEETVHSIRTGVHVV  193

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTS-------  396
            V TPGRL D +    + L +  +L++DEAD ++  G+   +  + + +P           
Sbjct  194  VATPGRLVDSLERNIIGLDKCYYLIMDEADRMIDMGFEKALQSILSYVPSTDRLNSTIDS  253

Query  397  ---DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTD  453
                 K+   ++ +AT+ S  ++K+++  +  P ++ + G     D +      +   T 
Sbjct  254  MIFHIKKRITLMFTATI-SPPIEKITKNFLIKPGYLYIGGAGEALDHIVQNFEYLGSATG  312

Query  454  RLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ----A  509
                                            SE     + +  VR I++H  +      
Sbjct  313  -------------------------------GSEDFDSKRFDKLVRIIQQHSRESRQFSI  341

Query  510  IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL  569
            IIF   K  CD L     + G   +        V +HG +    R++ +  F+  + R L
Sbjct  342  IIFANYKRVCDLLSLELEKNGFRDN--------VVIHGSKTQELREKAISSFRSHESRIL  393

Query  570  ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            I TDVAARGID+  V  V+N  +  +   YVHRIGR GRA   G + + +      V+  
Sbjct  394  IATDVAARGIDVPNVSLVVNFQMSRKFDEYVHRIGRTGRAGNRGESYTFIDDSDSDVFID  453

Query  630  VCSSRGKG  637
            +      G
Sbjct  454  LKKFLVNG  461


 Score = 97.9 bits (242),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 8/110 (7%)

Query  1    MAAFSEMGVMPEIAQAV-EEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
            +  ++E  +  ++   + +++++L PT IQ  +IPL L   DV+  AETGSGKT AF IP
Sbjct  55   LRTWNEASIPSKLLSIIVDKLEYLEPTPIQRAAIPLALNQRDVVGIAETGSGKTLAFLIP  114

Query  60   VIQIVYETLKD------QQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
            ++  +  T K+      QQE    K  +    +   +           F 
Sbjct  115  LLSYILNTDKNYLEYEHQQEQNYNK-PLGLILAPTRELAQQITKEAQKFG  163


>sp|A5E058|PRP5_LODEL Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Lodderomyces elongisporus (strain ATCC 11503 
/ CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 
GN=PRP5 PE=3 SV=1
Length=994

 Score = 289 bits (740),  Expect = 8e-84, Method: Composition-based stats.
 Identities = 106/494 (21%), Positives = 191/494 (39%), Gaps = 95/494 (19%)

Query  224  NQALFPACVLKNAELKFNFGEEEFKFPPK-------DGFVALSKAPDGYIVKSQHSGNAQ  276
             Q L P  V+   +    F +                  + ++K   G  +         
Sbjct  390  GQLLMPESVMSVIQNDLGFAKPSPIQCQAIPIVLSGRDMIGVAKTGSGKTLSYVLPMVRH  449

Query  277  VT-QTKFLPN-APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLS  334
            +  Q    P   P  L++ P+RELA Q    I +F   +D   L+     GG    +Q+S
Sbjct  450  IQDQLFPKPGEGPIGLVLSPTRELALQIEKEILKFSSTMD---LKVCCCYGGSNIENQIS  506

Query  335  VLENGVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQI  391
             L+ GV+++V TPGRL DL++        L +  F+VLDEAD +   G+   I ++  QI
Sbjct  507  ELKRGVNVIVATPGRLIDLLAANGGRITTLRRTTFVVLDEADRMFDMGFEPQIQKIFTQI  566

Query  392  PQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPK  451
                      Q ++ SAT     +++L++K++H P  + + G   V   +   ++     
Sbjct  567  ------RPDKQTVLFSATFP-RKLEQLAKKVLHNPIEIIVGGVSVVASEISQEIILFEDT  619

Query  452  TDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAII  511
               +  ++ K                              L+   +          + ++
Sbjct  620  DQLMNHKIQK------------------------------LEDILSRFFDLGKNTGKVLV  649

Query  512  FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK--KGDVRFL  569
            F   + D D L    +++            C+ +HG +   +RK  +  F   +  +  L
Sbjct  650  FVEKQTDADKLVSVLLKKA---------IPCIAIHGGKDQIDRKHAIREFSDDQSGINVL  700

Query  570  ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            I T +AARG+D+  +  V+N   P   ++YVHR+GR GRA + G AI+ V   +EK    
Sbjct  701  IATSIAARGLDVRNLDLVVNFEPPSHLEDYVHRVGRTGRAGKHGEAITFVDNTQEK----  756

Query  630  VCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVT  689
                                         +S + + L  +   V+  ++   D+F  K+ 
Sbjct  757  ----------------------------EISILVKALKMSSRAVDSKLQEIADKFMKKIE  788

Query  690  YGQKRAAGGGSYKG  703
             G+++ + G   KG
Sbjct  789  SGEEKRSSGFGGKG  802


 Score = 102 bits (255),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 25/111 (23%), Positives = 55/111 (50%), Gaps = 6/111 (5%)

Query  3    AFSEMGVMPEIAQAV-EEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             + ++ +   +   +  ++ +  P+ IQ ++IP++L G D++  A+TGSGKT ++ +P++
Sbjct  388  TWGQLLMPESVMSVIQNDLGFAKPSPIQCQAIPIVLSGRDMIGVAKTGSGKTLSYVLPMV  447

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD-GLCC  111
            + + + L      K G+  I    S   +  +        F+   D  +CC
Sbjct  448  RHIQDQLFP----KPGEGPIGLVLSPTRELALQIEKEILKFSSTMDLKVCC  494


>sp|P0CQ88|PRP28_CRYNJ Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Cryptococcus neoformans var. neoformans serotype 
D (strain JEC21 / ATCC MYA-565) OX=214684 GN=PRP28 PE=3 
SV=1
Length=738

 Score = 283 bits (725),  Expect = 1e-83, Method: Composition-based stats.
 Identities = 99/407 (24%), Positives = 166/407 (41%), Gaps = 71/407 (17%)

Query  251  PKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN-----APKALIVEPSRELAEQTLNN  305
                 + ++K   G            +     L +      P ALI+ P+RELA+Q    
Sbjct  351  QNRDLIGVAKTGSGKTAAFVIPMLDYIGHLPPLNDDNRHLGPYALIMAPTRELAQQIETE  410

Query  306  IKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVR  365
             ++F   +     + + I+GG +  +Q   L +G +I++ TPGRL D+V    L +SQ R
Sbjct  411  TRRFALPLG---YKCVSIVGGRSVEEQQFALRDGAEIIIATPGRLKDMVDKSILVMSQCR  467

Query  366  FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR---------------LQVIVCSATL  410
            ++V+DEAD ++  G+   +N + + +P                           + SAT+
Sbjct  468  YVVMDEADRMVDLGFEVDLNFILDSMPATFVKPDDSVALQPTKEGEWQGWRVTTLFSATM  527

Query  411  HSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVH  470
                V++L+ K +  P  V +       DTV   V  V+    +                
Sbjct  528  PPA-VERLARKYLIKPATVVIGNAGEAVDTVEQRVEFVHGDEKK----------------  570

Query  471  AKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQG  530
                           +  I+IL+                I+F   K   D + +Y  Q G
Sbjct  571  --------------KARLIEILRTIGL--------PPPIIVFVNQKKTADMVVKYVQQAG  608

Query  531  GGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINV  590
                      S V LH  +   +R+  L+  + G++  L+ TD+A RGID+  V  VIN 
Sbjct  609  ---------MSGVTLHSGKSQEQREAALQALRDGEISVLVATDLAGRGIDVPDVSLVINW  659

Query  591  TLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
             + D  + YVHRIGR GRA + G+AI+ +  + ++V Y +     K 
Sbjct  660  QMSDTIEKYVHRIGRTGRAGKTGVAITFLTNDDDEVMYDLRIEVEKS  706


 Score = 98.7 bits (244),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 1/104 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  + E  +  +I   +EE+ +  P+ IQ ++IP+ +   D++  A+TGSGKT AF IP+
Sbjct  314  LRNWRESAIPSQILDIIEEIGYKEPSPIQRQAIPIGMQNRDLIGVAKTGSGKTAAFVIPM  373

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            +  +   L    +  +         +   +           FA+
Sbjct  374  LDYI-GHLPPLNDDNRHLGPYALIMAPTRELAQQIETETRRFAL  416


>sp|P0CQ89|PRP28_CRYNB Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Cryptococcus neoformans var. neoformans serotype 
D (strain B-3501A) OX=283643 GN=PRP28 PE=3 SV=1
Length=738

 Score = 283 bits (725),  Expect = 1e-83, Method: Composition-based stats.
 Identities = 99/407 (24%), Positives = 166/407 (41%), Gaps = 71/407 (17%)

Query  251  PKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN-----APKALIVEPSRELAEQTLNN  305
                 + ++K   G            +     L +      P ALI+ P+RELA+Q    
Sbjct  351  QNRDLIGVAKTGSGKTAAFVIPMLDYIGHLPPLNDDNRHLGPYALIMAPTRELAQQIETE  410

Query  306  IKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVR  365
             ++F   +     + + I+GG +  +Q   L +G +I++ TPGRL D+V    L +SQ R
Sbjct  411  TRRFALPLG---YKCVSIVGGRSVEEQQFALRDGAEIIIATPGRLKDMVDKSILVMSQCR  467

Query  366  FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR---------------LQVIVCSATL  410
            ++V+DEAD ++  G+   +N + + +P                           + SAT+
Sbjct  468  YVVMDEADRMVDLGFEVDLNFILDSMPATFVKPDDSVALQPTKEGEWQGWRVTTLFSATM  527

Query  411  HSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVH  470
                V++L+ K +  P  V +       DTV   V  V+    +                
Sbjct  528  PPA-VERLARKYLIKPATVVIGNAGEAVDTVEQRVEFVHGDEKK----------------  570

Query  471  AKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQG  530
                           +  I+IL+                I+F   K   D + +Y  Q G
Sbjct  571  --------------KARLIEILRTIGL--------PPPIIVFVNQKKTADMVVKYVQQAG  608

Query  531  GGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINV  590
                      S V LH  +   +R+  L+  + G++  L+ TD+A RGID+  V  VIN 
Sbjct  609  ---------MSGVTLHSGKSQEQREAALQALRDGEISVLVATDLAGRGIDVPDVSLVINW  659

Query  591  TLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
             + D  + YVHRIGR GRA + G+AI+ +  + ++V Y +     K 
Sbjct  660  QMSDTIEKYVHRIGRTGRAGKTGVAITFLTNDDDEVMYDLRIEVEKS  706


 Score = 98.7 bits (244),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 1/104 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  + E  +  +I   +EE+ +  P+ IQ ++IP+ +   D++  A+TGSGKT AF IP+
Sbjct  314  LRNWRESAIPSQILDIIEEIGYKEPSPIQRQAIPIGMQNRDLIGVAKTGSGKTAAFVIPM  373

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            +  +   L    +  +         +   +           FA+
Sbjct  374  LDYI-GHLPPLNDDNRHLGPYALIMAPTRELAQQIETETRRFAL  416


>sp|A6RC50|DBP5_AJECN ATP-dependent RNA helicase DBP5 OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=DBP5 PE=3 
SV=1
Length=497

 Score = 277 bits (707),  Expect = 1e-83, Method: Composition-based stats.
 Identities = 117/525 (22%), Positives = 220/525 (42%), Gaps = 96/525 (18%)

Query  150  STMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNG  209
            +T  ++ D  TD    GFGG+  +           E++++  +          +   K+ 
Sbjct  41   ATKPSAADGQTDGASEGFGGSQLQE---------PEYSVNVKLSDLQADPNNPLYSIKSF  91

Query  210  KDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKS  269
            ++LGL   I   + + +      ++   L                 +  S++  G     
Sbjct  92   EELGLHPSILQGLHSMSFRRPSKIQEKALPLLLNNPPAN------MIGQSQSGTGKTAAF  145

Query  270  QHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAA  329
              +  +++  +  +  AP+AL++ PSRELA Q +  I+    Y+D  KL+    +   + 
Sbjct  146  VLNILSRLDLSPQMELAPQALVLAPSRELARQIVGVIQVMGSYVD--KLKVATAVPMESN  203

Query  330  RDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLS-QGYSDFINRMH  388
            R+Q    +    +VVGTPG + DL+     N   ++ +VLDEAD +L  QG  D   R+ 
Sbjct  204  RNQ----KVEAPVVVGTPGTVMDLIRKRLFNPQHLKVIVLDEADNMLDQQGLGDQCIRVK  259

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
              +P      K +QV++ SAT     V+  + K       + LK E+   + +  + +  
Sbjct  260  GLLP------KNIQVVLFSATFPDHVVR-YANKFAPNANQITLKHEELTVEGIKQLYLDC  312

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
            +                                           K +  V+      +  
Sbjct  313  DSDEH---------------------------------------KFDILVKFYGLLTIGS  333

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
            +IIF +T+     +E+  + +G          + V L G  +  +R + +++F++GD + 
Sbjct  334  SIIFVKTRASAVEIERRMVAEG---------HTVVSLTGGVEGQKRDEIIDKFRQGDAKV  384

Query  569  LICTDVAARGIDIHGVPYVINVTLPD-----------EKQNYVHRIGRVGRAERMGLAIS  617
            LI T+V ARGID+  V  VIN  +P+           + Q Y+HRIGR GR  R+G+A+S
Sbjct  385  LITTNVLARGIDVQTVSMVINYDIPELHAPKATKRIADAQTYLHRIGRTGRFGRVGVAVS  444

Query  618  LVATEKE-KVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE  661
             VA+++E ++   +     K  +NT +      T  ++E++ + +
Sbjct  445  FVASKEEWQMLQDI-----KTYFNTEI--QRVNTQDWDEVEEVVK  482


 Score = 81.7 bits (200),  Expect = 7e-15, Method: Composition-based stats.
 Identities = 19/66 (29%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGG--DVLMAAETGSGKTGAFSI  58
            + +F E+G+ P I Q +  M +  P+ IQ +++PL+L     +++  +++G+GKT AF +
Sbjct  88   IKSFEELGLHPSILQGLHSMSFRRPSKIQEKALPLLLNNPPANMIGQSQSGTGKTAAFVL  147

Query  59   PVIQIV  64
             ++  +
Sbjct  148  NILSRL  153


>sp|Q6CXB7|HAS1_KLULA ATP-dependent RNA helicase HAS1 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=HAS1 PE=3 SV=1
Length=497

 Score = 277 bits (707),  Expect = 2e-83, Method: Composition-based stats.
 Identities = 82/430 (19%), Positives = 159/430 (37%), Gaps = 72/430 (17%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            DL L+      +          ++   +                 +  +K   G  +   
Sbjct  38   DLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLA--------GKDVLGAAKTGSGKTLAFL  89

Query  271  HSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAA  329
                  +   KF P N    +++ P+RELA Q     ++  ++         ++IGG   
Sbjct  90   IPAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQT---FGIVIGGANR  146

Query  330  RDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
            R +   L  GV+I++ TPGRL D + +T       ++ LV+DEAD +L  G+ D + ++ 
Sbjct  147  RQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQII  206

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH-FPTWVDLKGED--SVPDTVHHVV  445
              +P      +  Q ++ SAT  +  V+ L+   +   P ++++  E   S  D +    
Sbjct  207  KILP-----NEDRQSMLFSAT-QTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGY  260

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
            V                                              +       +K ++
Sbjct  261  VVCESDK----------------------------------------RFLLLFSFLKRNQ  280

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
              + I+F  +        +                  + LHG +K  +R      F   +
Sbjct  281  KKKVIVFLSSCNSVKYYAELL---------NYIDLPVLELHGKQKQQKRTNTFFEFCNAE  331

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER-MGLAISLVATEKE  624
               L+CTDVAARG+DI  V ++I    PD+ ++Y+HR+GR  R  +  G ++  +   + 
Sbjct  332  RGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPTEL  391

Query  625  KVWYHVCSSR  634
                ++ +++
Sbjct  392  GFLRYLKAAK  401


 Score = 103 bits (256),  Expect = 9e-22, Method: Composition-based stats.
 Identities = 28/94 (30%), Positives = 49/94 (52%), Gaps = 5/94 (5%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +FS++ +     +A+ +M +   T +Q  +IP +L G DVL AA+TGSGKT AF IP I+
Sbjct  35   SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE  94

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
            +++      + G     T     +   +  +  +
Sbjct  95   MLHSLKFKPRNG-----TGVIVITPTRELALQIF  123


>sp|Q4FZF3|DDX49_MOUSE Probable ATP-dependent RNA helicase DDX49 
OS=Mus musculus OX=10090 GN=Ddx49 PE=2 SV=1
Length=480

 Score = 276 bits (705),  Expect = 2e-83, Method: Composition-based stats.
 Identities = 107/453 (24%), Positives = 177/453 (39%), Gaps = 77/453 (17%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNI  306
                     +  +K   G           ++++    P     L++ P+RELA Q     
Sbjct  34   PAILEGRDCLGCAKTGSGKTAAFVLPILQKLSED---PYGIFCLVLTPTRELAYQIAEQF  90

Query  307  KQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVST-GKLNLSQVR  365
            +   K +    L++ +I+GG+    Q   L     +V+ TPGRL D + +    N+ +++
Sbjct  91   RVLGKPLG---LKDCIIVGGMDMVAQALELSRKPHVVIATPGRLADHLRSSNTFNMKKIQ  147

Query  366  FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF  425
            FLV+DEAD LL QG +DF   +   +  V +   R Q ++ SATL    +K+L     + 
Sbjct  148  FLVMDEADRLLEQGCTDFTTDLETILAAVPA---RRQTLLFSATLTDT-LKELQGLATNE  203

Query  426  PTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW  485
            P + + +      + +    + V  K                                  
Sbjct  204  PFFWEAQATVRTVEQLDQRYLLVPEK----------------------------------  229

Query  486  SEAIKILKGEYAVRAIKEHKMD----QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFS  541
                  +K  Y V  ++  +        IIF  T   C  L     +           F 
Sbjct  230  ------VKDAYLVHLVQTFQDQLEDCSIIIFTNTCKTCQILCMMLRKF---------NFP  274

Query  542  CVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH  601
             V LH   K  ER   L +FK    R LI TDVA+RG+DI  V  VIN   P   + Y+H
Sbjct  275  TVALHSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIH  334

Query  602  RIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE  661
            R+GR  RA R G AI+LV      + + +     +      ++E          +Q+L++
Sbjct  335  RVGRTARAGRQGQAITLVTQYDIHLLHAIEEQIKQQLAELVVEEA-------EVLQILTQ  387

Query  662  IEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKR  694
            +       + + E +IK+    FD K    +++
Sbjct  388  V------NVVRRECEIKLEASHFDEKKEINKRK  414


 Score = 103 bits (256),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 34/142 (24%), Positives = 56/142 (39%), Gaps = 20/142 (14%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            MA F+E+G+   + +   ++    PT +Q   IP IL G D L  A+TGSGKT AF +P+
Sbjct  1    MAGFAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPI  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA----------IGSDGLC  110
            +Q + E                   +   +      ++               +G   + 
Sbjct  61   LQKLSEDPY---------GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMV  111

Query  111  CQSREVKEW-HGCRATKGLMKG  131
             Q+ E+    H   AT G +  
Sbjct  112  AQALELSRKPHVVIATPGRLAD  133


>sp|Q6BL34|DBP10_DEBHA ATP-dependent RNA helicase DBP10 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 
/ JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP10 PE=3 
SV=2
Length=932

 Score = 287 bits (734),  Expect = 2e-83, Method: Composition-based stats.
 Identities = 115/475 (24%), Positives = 183/475 (39%), Gaps = 46/475 (10%)

Query  228  FPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN--  285
            FP+       L  N  ++ FK P       +    +   V       +  T    LP   
Sbjct  99   FPSFGFSKFLLT-NISKKGFKQPTPIQRKTIPLIMENRDVVGMARTGSGKTAAFTLPLVE  157

Query  286  ---------APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL  336
                       +A+I+ PSRELA QT   +K+F K      LR +++IGG +  +Q S +
Sbjct  158  KLKSHSPRVGVRAIILSPSRELASQTFKQVKEFSK---GTDLRSIVLIGGDSLEEQFSSM  214

Query  337  ENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTS  396
                D++V TPGR   L    +L L  V ++V DEAD L   G+++ +N +   +P    
Sbjct  215  MTNPDVIVATPGRFLHLKVEMELELKTVEYIVFDEADRLFEMGFAEQLNELIAALPSS--  272

Query  397  DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDR--  454
                 Q ++ SATL    +   ++  +  P  V L  E  + D +      +        
Sbjct  273  ----RQSLLFSATLPRSLI-DFAKAGLTNPVLVRLDAETKISDQLQMAFFSIKNNEREAS  327

Query  455  ----LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM----  506
                L E +       ++V    +     N  E  +E     K +      +        
Sbjct  328  LLYVLQEVIKLPLASPEEVKRYSDMEKRDNGSEDEAEDENNNKKKRFKFKKERLPPANML  387

Query  507  ---DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
                  IIF  TK   + +       G         +    ++G    H RKQ L +F+ 
Sbjct  388  PSKHSTIIFVPTKHHVEYVTTLLKDAG---------YLVSYIYGTLDQHARKQQLYQFRI  438

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
            G    L+ TDVAARGIDI  +  V+N TLP   + ++HR+GR  RA   G A S+V  ++
Sbjct  439  GMTSLLVVTDVAARGIDIPILANVVNYTLPGSSKIFIHRVGRTARAGNSGWAYSIVNEKE  498

Query  624  EKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIK  678
                  +    G+    T + E           Q  + +E  ++ T   V   I 
Sbjct  499  LPYLLDLELFLGRKVLLTSMHEKK--CEMLKTKQSSNYVEPKVSYTDRLVLGSIP  551


 Score = 100 bits (248),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 26/105 (25%), Positives = 46/105 (44%), Gaps = 7/105 (7%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F   G    +   + +  +  PT IQ ++IPLI+   DV+  A TGSGKT AF++P+++
Sbjct  98   SFPSFGFSKFLLTNISKKGFKQPTPIQRKTIPLIMENRDVVGMARTGSGKTAAFTLPLVE  157

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
             +                     S   +     + +   F+ G+D
Sbjct  158  KLKSHSPRV-------GVRAIILSPSRELASQTFKQVKEFSKGTD  195


>sp|Q921N6|DDX27_MOUSE Probable ATP-dependent RNA helicase DDX27 
OS=Mus musculus OX=10090 GN=Ddx27 PE=1 SV=3
Length=760

 Score = 283 bits (724),  Expect = 2e-83, Method: Composition-based stats.
 Identities = 108/510 (21%), Positives = 192/510 (38%), Gaps = 76/510 (15%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIV-  267
            G+  G  FE          F    L    LK       FK P       +     G  + 
Sbjct  167  GQAAGGFFEDASEYDKSLSFQDMNLSRPLLK-AITAMGFKQPTPIQKACIPVGLLGKDIC  225

Query  268  --------KSQHSGNAQVTQTKFLPNA---PKALIVEPSRELAEQTLNNIKQFKKYIDNP  316
                    K+       + +  + P      + L++ P+REL  Q  +  KQ  ++    
Sbjct  226  ACAATGTGKTAAFALPVLERLIYKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCS--  283

Query  317  KLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGL  375
             +   L +GG+  + Q + L    DI++ TPGRL D + +    +LS +  L+LDEAD +
Sbjct  284  -ITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRM  342

Query  376  LSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED  435
            L + + + +  +              Q ++ SAT+   +VK L+   +  P  + +    
Sbjct  343  LDEYFEEQMKEIIRMC------SHHRQTMLFSATMTD-EVKDLASVSLKNPVRIFVNSNT  395

Query  436  SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGE  495
             V   +    + + P  +   E +  +                                 
Sbjct  396  DVAPFLRQEFIRIRPNREGDREAIVAA---------------------------------  422

Query  496  YAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERK  555
                 +     D  ++F +TK     +                      LHG+    +R 
Sbjct  423  ----LLMRTFTDHVMLFTQTKKQAHRMH---------ILLGLLGLQVGELHGNLSQTQRL  469

Query  556  QNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLA  615
            + L RFK   +  L+ TDVAARG+DI GV  VIN T+P+  ++YVHR+GR  RA R G +
Sbjct  470  EALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRS  529

Query  616  ISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEP  675
            +SLV  E+ K+   +  +         L +D    +       + ++E+ +   + Q+E 
Sbjct  530  VSLVGEEERKMLKEIVKAAKAPVKARILPQD----VILKFRDKIEKLEKDVYAVL-QLEA  584

Query  676  DIKVPVDEFDGKVTYGQKRAAGGGSYKGHV  705
            + K  + + + ++   Q+  A G       
Sbjct  585  EEK-EMQQSEAQIDTAQRLLAKGKETADQE  613


 Score = 105 bits (261),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 28/123 (23%), Positives = 52/123 (42%), Gaps = 9/123 (7%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F +M +   + +A+  M +  PT IQ   IP+ L G D+   A TG+GKT AF++PV++
Sbjct  185  SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE  244

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY---DRGSAFAIGSDGLCCQSREVKEW  119
             +          ++   T         +  +  +    + + F   +  L     +VK  
Sbjct  245  RLIYKP------RQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQ  298

Query  120  HGC  122
               
Sbjct  299  EAA  301


>sp|Q0V1Z7|DRS1_PHANO ATP-dependent RNA helicase DRS1 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=DRS1 PE=3 SV=1
Length=808

 Score = 284 bits (727),  Expect = 2e-83, Method: Composition-based stats.
 Identities = 104/472 (22%), Positives = 178/472 (38%), Gaps = 68/472 (14%)

Query  218  IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQV  277
            I   +          ++   +                 V  ++   G           ++
Sbjct  296  IQKGLAAIGFTEPTPIQAKAIPIAM--------QGKDVVGGAETGSGKTAAFLIPILERL  347

Query  278  TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE  337
                      +  I  P+RELA Q  N   +   + D   +   L+ GG ++R+Q  +L+
Sbjct  348  LYRPKKVPTTRVAIFMPTRELAVQCFNVATKLASFTD---ITFALLAGGFSSREQEVMLK  404

Query  338  NGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTS  396
               D+V+ TPGR  D + +T    +  +  LVLDEAD +L +G+   +N +   IP    
Sbjct  405  TRPDVVIATPGRFIDHMHNTAAFQVEHLEILVLDEADRMLEEGFETQLNEILTTIP----  460

Query  397  DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLW  456
              K  Q ++ SAT+ S  V KL    M  P  + +  +      +    + +        
Sbjct  461  --KSRQTMLFSATMTST-VDKLIRIGMDKPVRLMVDAKKHTVKGLTQEFIRLR-------  510

Query  457  ERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTK  516
                                          +  +  +  Y +   ++   ++ IIF R K
Sbjct  511  ------------------------------QGKEDKRLAYLMYICEKIYTERVIIFFRQK  540

Query  517  IDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAA  576
             +   +   F   G              LHG+    +R Q +E F+ G   +L+ TDVA+
Sbjct  541  KEAHRVRVVFALCG---------LKASELHGNMSQEQRIQAVEAFRSGKSSYLLATDVAS  591

Query  577  RGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH-VCSSRG  635
            RG+DI  V  VIN   P   + Y+HR+GR  RA R G A +L A    KV    V  SR 
Sbjct  592  RGLDIKNVSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKQAVKQSRD  651

Query  636  KGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGK  687
            +G      +     T  +  M+ L  +E+ +   + + + +  + + E D K
Sbjct  652  QGSKVVSRQVPVEETDRW--MEKLRGLEDEIEDVLKEEKEERTLSITERDLK  701


 Score = 109 bits (273),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 31/107 (29%), Positives = 53/107 (50%), Gaps = 6/107 (6%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F  M +   I + +  + +  PT IQA++IP+ + G DV+  AETGSGKT AF IP+
Sbjct  284  IGSFHAMSLSRPIQKGLAAIGFTEPTPIQAKAIPIAMQGKDVVGGAETGSGKTAAFLIPI  343

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            ++ +    K      K  TT         +  +  ++  +  A  +D
Sbjct  344  LERLLYRPK------KVPTTRVAIFMPTRELAVQCFNVATKLASFTD  384


>sp|A5DZX2|DBP5_LODEL ATP-dependent RNA helicase DBP5 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP5 PE=3 SV=1
Length=511

 Score = 277 bits (707),  Expect = 2e-83, Method: Composition-based stats.
 Identities = 105/465 (23%), Positives = 193/465 (42%), Gaps = 79/465 (17%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K+ ++LGL  E+   +          ++   L                 +  S++  G  
Sbjct  116  KSFEELGLKPELLKGLYAMKFNKPSKIQERALPLLISNPP------KNMIGQSQSGTGKT  169

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
                 +    +++      AP+ + + P+RELA QTL  ++   KY     +   L++  
Sbjct  170  AAFSLT---MLSRVDESIKAPQCICLAPTRELARQTLEVVETMGKY---SNITYQLVVPD  223

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLS-QGYSDFIN  385
               R Q         ++VGTPG + DL++   +N+++V+  VLDEAD +L  QG +D   
Sbjct  224  SVPRGQAI----SAQVLVGTPGIVHDLINRKAINVAKVKVFVLDEADNMLDAQGLADTCL  279

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
            R+  ++P      +  Q+++ SAT  + +V+K +EK +     + LK E+     +  + 
Sbjct  280  RVKKRLP------RDCQLVLFSATFPT-EVRKYAEKFVPNANSLALKQEELNVKGIKQLY  332

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
            +    +  +                                   ++L   Y +  I    
Sbjct  333  MDCKNQEHKF----------------------------------EVLCELYGLLTI----  354

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
               +IIF   K   D+L     ++G          +   LHG  +  +R + ++ F++G 
Sbjct  355  -GSSIIFVEQKATADSLYLRMKEEG---------HTVSILHGGLEVADRDRLIDDFREGR  404

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPD------EKQNYVHRIGRVGRAERMGLAISLV  619
             + LI T+V ARGIDI  V  V+N  LP       +   Y+HRIGR GR  R+G+++S V
Sbjct  405  SKVLITTNVLARGIDIATVSMVVNYDLPRTKEGRPDPSTYLHRIGRTGRFGRVGVSVSFV  464

Query  620  ATEKE-KVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIE  663
            A EK+ +   ++    G     T +  D    +     +++ E +
Sbjct  465  ANEKDYQTLKYIAEYFGIEDQMTVVPTDDWDEVEKIVTRVIKEKK  509


 Score = 93.3 bits (230),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 22/74 (30%), Positives = 47/74 (64%), Gaps = 2/74 (3%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            + +F E+G+ PE+ + +  M +  P+ IQ  ++PL++     +++  +++G+GKT AFS+
Sbjct  115  VKSFEELGLKPELLKGLYAMKFNKPSKIQERALPLLISNPPKNMIGQSQSGTGKTAAFSL  174

Query  59   PVIQIVYETLKDQQ  72
             ++  V E++K  Q
Sbjct  175  TMLSRVDESIKAPQ  188


>sp|Q5AVM1|DBP5_EMENI ATP-dependent RNA helicase dbp5 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=dbp5 PE=3 SV=1
Length=477

 Score = 275 bits (704),  Expect = 3e-83, Method: Composition-based stats.
 Identities = 101/476 (21%), Positives = 190/476 (40%), Gaps = 84/476 (18%)

Query  199  DKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVAL  258
                +   KN +DLGL   I   +          ++   L    G            V  
Sbjct  61   PNNPLYSVKNFEDLGLDPRILQGLSAMNFRKPSKIQERALPLLMGNPP------KNLVGQ  114

Query  259  SKAPDGYIVKSQHSGNAQVTQT-KFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPK  317
            S++  G       +  +++  + +     P+ALI+ P+RELA Q +  I+   K++D   
Sbjct  115  SQSGTGKTAAFVLNILSRLDLSSEQAQKTPQALILAPTRELARQIVGVIQVMGKFLDGLH  174

Query  318  LRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLS  377
            +   +      A            +VVGTPG + D++    +  ++++ +VLDEAD +L 
Sbjct  175  IGTAV-----PADTNARPTRMEASVVVGTPGTVMDMIKKRIMVAAKLKVIVLDEADNMLD  229

Query  378  -QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDS  436
             QG  D   R+   +P      + +QV++ SAT  +  V + + K       + L+ E+ 
Sbjct  230  QQGLGDQCIRVKALLP------RDIQVVLFSATFPAH-VHQYASKFAPAANELTLQHEEL  282

Query  437  VPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEY  496
              + +  + +    + D+    +    + T                              
Sbjct  283  TVEGIKQLYLDCASEEDKYRTLVQLYGLLT------------------------------  312

Query  497  AVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQ  556
                     +  +IIF +T+     +E+  + +G          +   L G  +  +R Q
Sbjct  313  ---------VGSSIIFVKTRASAVEIERRMVAEG---------HTVASLTGGIEGSQRDQ  354

Query  557  NLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD-----------EKQNYVHRIGR  605
             +++F+ G  + LI T+V ARGID+  V  VIN  +P+           + Q Y+HRIGR
Sbjct  355  IIDQFRAGHAKVLITTNVLARGIDVSTVSMVINYDIPELHQPPNRPRQADFQTYLHRIGR  414

Query  606  VGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE  661
             GR  R+G++IS V+  +E   + + +   K  +NT ++       W     ++ +
Sbjct  415  TGRFGRVGVSISFVSNREE---WEMLNQIQK-YFNTDIQR-IDTKDWDEVEDIIKK  465


 Score = 87.1 bits (214),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 24/116 (21%), Positives = 52/116 (45%), Gaps = 7/116 (6%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            +  F ++G+ P I Q +  M++  P+ IQ  ++PL++G    +++  +++G+GKT AF +
Sbjct  68   VKNFEDLGLDPRILQGLSAMNFRKPSKIQERALPLLMGNPPKNLVGQSQSGTGKTAAFVL  127

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSR  114
             ++  +  + +  Q     KT      +   +                DGL   + 
Sbjct  128  NILSRLDLSSEQAQ-----KTPQALILAPTRELARQIVGVIQVMGKFLDGLHIGTA  178


>sp|A5DY34|DRS1_LODEL ATP-dependent RNA helicase DRS1 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DRS1 PE=3 SV=1
Length=686

 Score = 281 bits (718),  Expect = 5e-83, Method: Composition-based stats.
 Identities = 99/471 (21%), Positives = 188/471 (40%), Gaps = 68/471 (14%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
            SK  ++L L+  I   ++         ++ + +                 VA ++   G 
Sbjct  195  SKTFQELQLSRPILKSLQQLGFTVPTPVQASTIPIAL--------LGKDIVASAQTGSGK  246

Query  266  IVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
                      ++   K    + KA+I+ P+RELA Q  +  ++  +++ N  L   + +G
Sbjct  247  TAAYLIPIIERLLYVKNS-TSTKAIILTPTRELAIQVHDVGRKLGQFVSN--LNFGMAVG  303

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            G++ + Q   L+   DIV+ TPGRL D + ++   ++  V+ L++DEAD +L +G+ + +
Sbjct  304  GLSLKQQEQQLKTRPDIVIATPGRLIDHIRNSPSFSVEDVQVLIIDEADRMLEEGFQEEL  363

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
              + + IP+     ++ Q ++ SAT+++  ++ L +  ++ P  V +    +V   +   
Sbjct  364  TEILSLIPK-----QKRQTLLFSATMNNTKIQDLVQLSLNKPIKVSIDPPRTVASKLEQQ  418

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
             V +  + +     L                                         + + 
Sbjct  419  FVRIRKREELKPAVL---------------------------------------YLLLKK  439

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
               + ++F RTK++                      +   LHG     +R  N++ FK  
Sbjct  440  LEGRTVVFTRTKVEAHK---------LRIILGLLGLTVAELHGALTQEQRLANVKAFKN-  489

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE-K  623
            +V  LICTD+AARG+DI  + YVIN  +P   + Y HR+GR  RA R G +IS V    +
Sbjct  490  NVNVLICTDLAARGLDI-RIEYVINYDMPKTYEIYTHRVGRTARAGRKGTSISFVGESMQ  548

Query  624  EKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVE  674
            ++                ++  D    I          IEE +       E
Sbjct  549  DRNIVKNAIQFNSRSVARKIDWDEVEKIQTKIKLNEGAIEEVIEEEKQARE  599


 Score = 105 bits (261),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 28/108 (26%), Positives = 54/108 (50%), Gaps = 7/108 (6%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F E+ +   I ++++++ + +PT +QA +IP+ L G D++ +A+TGSGKT A+ IP+I
Sbjct  196  KTFQELQLSRPILKSLQQLGFTVPTPVQASTIPIALLGKDIVASAQTGSGKTAAYLIPII  255

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGL  109
            + +          K   +T     +   +  +  +D G         L
Sbjct  256  ERLLYV-------KNSTSTKAIILTPTRELAIQVHDVGRKLGQFVSNL  296


>sp|Q0CDT1|DBP5_ASPTN ATP-dependent RNA helicase dbp5 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dbp5 
PE=3 SV=1
Length=487

 Score = 275 bits (703),  Expect = 5e-83, Method: Composition-based stats.
 Identities = 106/477 (22%), Positives = 194/477 (41%), Gaps = 86/477 (18%)

Query  199  DKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVAL  258
                +   KN +DLGL   I   +          ++   L                 V  
Sbjct  70   PNNPLFSVKNFEDLGLDPRILQGLSAMNFRKPSKIQERALPLLLSNPP------KNLVGQ  123

Query  259  SKAPDGYIVKSQHSGNAQVTQ-TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPK  317
            S++  G       +  +++   T+ +   P+ALI+ P+RELA Q +  I+   +++DN  
Sbjct  124  SQSGTGKTAAFVLNILSRLDLSTEQMQKTPQALILAPTRELARQIVGVIQVMGQFLDN--  181

Query  318  LRELLIIG-GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL  376
                LIIG  V A            +VVGTPG + D++    +  ++++ LVLDEAD +L
Sbjct  182  ----LIIGTAVPADTNNRPARMEASVVVGTPGTVMDMIKKRIMVPAKLQVLVLDEADNML  237

Query  377  S-QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED  435
              QG  D   R+   +P      + +QV++ SAT  +  V + + K       + L+ E+
Sbjct  238  DQQGLGDQCIRVKALLP------RTIQVVLFSATFPTH-VHQYASKFAPQANELTLQHEE  290

Query  436  SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGE  495
               + +  + +  + + D+    +    + T                             
Sbjct  291  LTVEGIKQLYLDCSDEEDKYRTLVSLYGLLT-----------------------------  321

Query  496  YAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERK  555
                      +  +IIF +T+     +E+  + +G          +   L G  +  +R 
Sbjct  322  ----------VGSSIIFVKTRQSAMEIEKRMVAEG---------HTVASLTGGIEGSQRD  362

Query  556  QNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD-----------EKQNYVHRIG  604
              +++F+ G  + LI T+V ARGID+  V  VIN  +P+           + Q Y+HRIG
Sbjct  363  AVIDQFRAGAAKVLITTNVLARGIDVSTVSMVINYDIPELHLPPNQPRQADFQTYLHRIG  422

Query  605  RVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE  661
            R GR  R+G++IS V+   E   +++ +   K  +NT ++       W     ++ +
Sbjct  423  RTGRFGRVGVSISFVSNRDE---WNMLNQIQK-YFNTSIQR-IDTKDWDEVEDIIKK  474


 Score = 86.7 bits (213),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 23/116 (20%), Positives = 50/116 (43%), Gaps = 7/116 (6%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            +  F ++G+ P I Q +  M++  P+ IQ  ++PL+L     +++  +++G+GKT AF +
Sbjct  77   VKNFEDLGLDPRILQGLSAMNFRKPSKIQERALPLLLSNPPKNLVGQSQSGTGKTAAFVL  136

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSR  114
             ++  +  + +  Q     KT      +   +                D L   + 
Sbjct  137  NILSRLDLSTEQMQ-----KTPQALILAPTRELARQIVGVIQVMGQFLDNLIIGTA  187


>sp|Q5RFQ5|DDX6_PONAB Probable ATP-dependent RNA helicase DDX6 
OS=Pongo abelii OX=9601 GN=DDX6 PE=2 SV=1
Length=483

 Score = 275 bits (702),  Expect = 5e-83, Method: Composition-based stats.
 Identities = 96/433 (22%), Positives = 167/433 (39%), Gaps = 66/433 (15%)

Query  210  KDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKS  269
            KDL +        K       C+ +   +       E   P ++  + ++ +    + ++
Sbjct  81   KDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARA  140

Query  270  QHSGN-------AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
            ++            + +     +  +A+++ P+RELA Q      Q  K++     + + 
Sbjct  141  KNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGA--KVMA  198

Query  323  IIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD  382
              GG   R  +  L++ V +V+ TPGR+ DL+  G   +  V+ +VLDEAD LLSQ +  
Sbjct  199  TTGGTNLRGDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQ  258

Query  383  FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH  442
             +  +   +P      K  Q+++ SAT     V+K     +  P  ++L  E+     V 
Sbjct  259  IMEDIILTLP------KNRQILLYSATFP-LSVQKFMNSHLQKPYEINLM-EELTLKGVT  310

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
                 V  +                                         K         
Sbjct  311  QYYAYVTERQ----------------------------------------KVHCLNTLFS  330

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
              +++Q+IIFC +    + L +   Q G         +SC  +H   +   R +    F+
Sbjct  331  RLQINQSIIFCNSSQRVELLAKKISQLG---------YSCFYIHAKMRQEHRNRVFHDFR  381

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             G  R L+CTD+  RGIDI  V  VIN   P   + Y+HRIG  GR   +GLAI+L+  +
Sbjct  382  NGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGGSGRFGHLGLAINLITYD  441

Query  623  KEKVWYHVCSSRG  635
                   +    G
Sbjct  442  DRFNLKSIEEQLG  454


 Score = 92.9 bits (229),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 9/91 (10%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +  +  E+   + EM W  P+ IQ ESIP+ L G D+L  A+ G+GK+GA+ IP+++ 
Sbjct  98   FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER  157

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
            +     + Q                 +  + 
Sbjct  158  LDLKKDNIQ---------AMVIVPTRELALQ  179


>sp|Q6BRE4|DBP5_DEBHA ATP-dependent RNA helicase DBP5 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP5 PE=3 SV=1
Length=493

 Score = 275 bits (703),  Expect = 6e-83, Method: Composition-based stats.
 Identities = 109/462 (24%), Positives = 191/462 (41%), Gaps = 83/462 (18%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K+ ++LGL+ E+   +          ++   L                 +  S++  G  
Sbjct  103  KSFEELGLSSELLKGLYAMKFNKPSKIQEKALPLLISNPP------KNMIGQSQSGTGKT  156

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
                 +    +++        + + + P+RELA QTL  I    K+    K+   LI+  
Sbjct  157  AAFSLT---MLSRVDESDPNTQCICLAPARELARQTLEVITTMSKF---TKITSQLIVPD  210

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLS-QGYSDFIN  385
               R Q         ++VGTPG L DL+    +N S+V+  VLDEAD +L  QG  D   
Sbjct  211  AMQRGQ----STCAHVLVGTPGTLLDLIRRKLINTSKVKVFVLDEADNMLESQGLGDQCV  266

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
            R+   +P+ T      Q+++ SAT    +V+K +EK +     ++LK E+   + +  + 
Sbjct  267  RVKRTLPKAT------QLVLFSATFPD-EVRKYAEKFVPNANSLELKQEELNVEGIKQLY  319

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
            +  +    +                            E+ SE   +L             
Sbjct  320  MDCDSANHKF---------------------------EVLSELYGLL------------T  340

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
            +  +IIF +TK   + L     ++G           C  LH   +  ER + ++ F++G 
Sbjct  341  IGSSIIFVKTKDTANILYAKMKKEG---------HKCSILHAGLETSERDRLIDDFREGR  391

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLP------DEKQNYVHRIGRVGRAERMGLAISLV  619
             + LI T+V ARGIDI  V  V+N  LP       +   Y+HRIGR GR  R+G++IS V
Sbjct  392  SKVLITTNVLARGIDIASVSMVVNYDLPVDQKGAPDPSTYLHRIGRTGRFGRVGVSISFV  451

Query  620  ATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE  661
                +K +  + + R    Y   ++     T  ++E++ + +
Sbjct  452  H--DQKSYQDLMAIRS---YFGNIEMTRVPTDDWDEVEKIVK  488


 Score = 91.0 bits (224),  Expect = 7e-18, Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 64/132 (48%), Gaps = 10/132 (8%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            + +F E+G+  E+ + +  M +  P+ IQ +++PL++     +++  +++G+GKT AFS+
Sbjct  102  VKSFEELGLSSELLKGLYAMKFNKPSKIQEKALPLLISNPPKNMIGQSQSGTGKTAAFSL  161

Query  59   PVIQIVYETLKDQQ---EGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSRE  115
             ++  V E+  + Q        +   +T   +     M+ + + ++  I  D +  Q  +
Sbjct  162  TMLSRVDESDPNTQCICLAPARELARQTLEVITT---MSKFTKITSQLIVPDAM--QRGQ  216

Query  116  VKEWHGCRATKG  127
                H    T G
Sbjct  217  STCAHVLVGTPG  228


>sp|A1CNV8|DRS1_ASPCL ATP-dependent RNA helicase drs1 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=drs1 PE=3 SV=1
Length=826

 Score = 283 bits (724),  Expect = 1e-82, Method: Composition-based stats.
 Identities = 100/452 (22%), Positives = 175/452 (39%), Gaps = 67/452 (15%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            ++ +D  L+  I   + +        ++   +                 V  +    G  
Sbjct  306  RSFQDFNLSRPILRGLASVNFTTPTPIQQKTIPVAL--------LGKDIVGSAVTGSGKT  357

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
                     ++          +  I+ P+RELA Q  N   +   + D   +    ++GG
Sbjct  358  AAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATHTD---VTFCQLVGG  414

Query  327  VAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
             + R+Q ++L+   D+++ TPGR +D + ++    +  +  LVLDEAD +L  G++D +N
Sbjct  415  FSLREQENILKKRPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEDGFADELN  474

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
             +   IP      K  Q ++ SAT+    V KL    ++ P  + +  + +    +    
Sbjct  475  EILTTIP------KSRQTMLFSATMTD-SVDKLIRVGLNRPVRLMVDSKKNTSMNLTQEF  527

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
            V + P   R  +RLG                                   Y +    E  
Sbjct  528  VRLRP--GREGKRLG-----------------------------------YLLYLCSEIF  550

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
              + I+F R K +   +   F   G              LHG     +R +++E F++G 
Sbjct  551  TGRVIVFFRQKKEAHRVRIVFGLLG---------LKAAELHGSMSQEQRIKSVESFREGK  601

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            V FL+ TD+A+RG+DI GV  VIN   P   + Y+HR+GR  RA R G A ++ A    K
Sbjct  602  VAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAADPDRK  661

Query  626  VWYHVCSS--RGKGCYNTRLKEDGGCTIWYNE  655
            V      +         +R+ E      W  +
Sbjct  662  VVKAAVRAGKAQGAKIASRVVEPAVADQWAAK  693


 Score = 108 bits (270),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 54/111 (49%), Gaps = 6/111 (5%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +F +  +   I + +  +++  PT IQ ++IP+ L G D++ +A TGSGKT AF +P++
Sbjct  306  RSFQDFNLSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPIL  365

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQ  112
            + +          +K  T+         +  +  Y+  +  A  +D   CQ
Sbjct  366  ERLLFRP------RKVPTSRVAILMPTRELAVQCYNVATKLATHTDVTFCQ  410


>sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 OS=Caenorhabditis 
elegans OX=6239 GN=glh-1 PE=1 SV=3
Length=763

 Score = 282 bits (720),  Expect = 1e-82, Method: Composition-based stats.
 Identities = 88/376 (23%), Positives = 145/376 (39%), Gaps = 51/376 (14%)

Query  255  FVALSKAPDGYIVKSQHSGNAQVTQTKFLPNA------PKALIVEPSRELAEQTLNNIKQ  308
             +A ++   G           ++     L  A      P+ +I+ P+RELA+Q  N  ++
Sbjct  381  IMACAQTGSGKTAAFLLPIMTRLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRK  440

Query  309  FKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLV  368
            F  Y    +++   + GG+A       +E G  I+VGT GR+      G + L + RF V
Sbjct  441  FA-YQTMMEIKP--VYGGLAVGYNKGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFV  497

Query  369  LDEADGLLS-QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH-FP  426
            LDEAD ++   G+   I  + N         +  Q ++ SAT     V++ +   +    
Sbjct  498  LDEADRMIDAMGFGTDIETIVNY--DSMPRKENRQTLMFSATFPD-SVQEAARAFLRENY  554

Query  427  TWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWS  486
              + +    +    V            +                            +   
Sbjct  555  VMIAIDKIGAANKCVLQEFERCERSEKK----------------------------DKLL  586

Query  487  EAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLH  546
            E + I    Y      E    + ++F   +   D L                Q   + +H
Sbjct  587  ELLGIDIDSYTTEKSAEVYTKKTMVFVSQRAMADTLASIL---------SSAQVPAITIH  637

Query  547  GDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRV  606
            G R+  ER + L +F+ G    LI T VA RG+DI GV +VIN  +PD   +Y+HRIGR 
Sbjct  638  GAREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRT  697

Query  607  GRAERMGLAISLVATE  622
            GR    G A S ++ +
Sbjct  698  GRVGNSGRATSFISED  713


 Score = 100 bits (250),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 0/102 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F+E  +   + + V    +   T IQ  ++PL+  G D++  A+TGSGKT AF +P++
Sbjct  341  KTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIM  400

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
              + +       G+ G        +   +     Y+ G  FA
Sbjct  401  TRLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFA  442


>sp|Q0UN57|PRP5_PHANO Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 
/ FGSC 10173) OX=321614 GN=PRP5 PE=3 SV=2
Length=1184

 Score = 288 bits (738),  Expect = 1e-82, Method: Composition-based stats.
 Identities = 94/449 (21%), Positives = 178/449 (40%), Gaps = 60/449 (13%)

Query  247  FKFPPKDGFVALSKAPDGYIVKS-QHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLN  304
                     + ++K   G  +          + Q    P + P  LI+ P+REL+ Q +N
Sbjct  576  PIAESGRDLIGVAKTGSGKTLAFGIPMIRHVLDQRPLKPADGPIGLILAPTRELSLQIVN  635

Query  305  NIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG-VDIVVGTPGRLDDLVSTGK---LN  360
             +K F   ++   +      GG    DQ+++++ G + I+  T GRL DL+ +     L+
Sbjct  636  ELKPF---LNASGITIKCAYGGQPISDQIAMIKRGGIHILCATAGRLIDLLQSNSGRVLS  692

Query  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
              ++ ++VLDEAD +   G+   + ++   I          Q I+ SAT     +  L+ 
Sbjct  693  FRRITYVVLDEADRMFDMGFEPQVMKILASI------RPDRQTILFSATFPKT-MAALAR  745

Query  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480
            K +  P  V + G   V   +   +  V P  ++   +L                     
Sbjct  746  KALDKPAEVIIGGRSKVAPEITQHITIVPPSYEKKIAKL---------------------  784

Query  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540
                           +  +   + +  Q +IF   +   ++L             K   F
Sbjct  785  -------------LHHLGQTFSDDENAQVLIFTERQETAEDLLSKLF--------KAKYF  823

Query  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600
            +   +HG +   +R + +  FK+G +  LI T VAARG+D+ G+  V N   P   ++YV
Sbjct  824  AVNTIHGAKDQTDRNEAINEFKQGLLNILIATSVAARGLDVPGLALVYNFDCPTHLEDYV  883

Query  601  HRIGRVGRAERMGLAISLV-ATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLL  659
            HR GR GRA   GLA++L+    +E+   H+  +  +               ++ +++  
Sbjct  884  HRCGRTGRAGNKGLAVTLIENPGQERFAVHIVKALKESGAEVPDDLQAMANAFHEKVKSG  943

Query  660  SEIEEHLNCTISQVEP-DIKVPVDEFDGK  687
            +E   ++      ++  D    +D+   K
Sbjct  944  TEKYYNVGFKGKGLDELDASRALDKKREK  972


 Score = 105 bits (263),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 4/102 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  +++MG++ +       + +  PT IQA++IP+   G D++  A+TGSGKT AF IP+
Sbjct  543  VTKWAQMGLLQQTMDVFTRVGYARPTAIQAQAIPIAESGRDLIGVAKTGSGKTLAFGIPM  602

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            I+ V     DQ+  K     I    +   +  +   +    F
Sbjct  603  IRHVL----DQRPLKPADGPIGLILAPTRELSLQIVNELKPF  640


>sp|Q9SA27|RH36_ARATH DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis 
thaliana OX=3702 GN=RH36 PE=2 SV=1
Length=491

 Score = 274 bits (700),  Expect = 1e-82, Method: Composition-based stats.
 Identities = 102/446 (23%), Positives = 177/446 (40%), Gaps = 64/446 (14%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNI  306
             K       + L++   G           ++ +    P    AL+V P+RELA Q     
Sbjct  90   PKILAGRDVLGLAQTGSGKTAAFALPILHRLAED---PYGVFALVVTPTRELAFQLAEQF  146

Query  307  KQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGK---LNLSQ  363
            K     ++   LR  +I+GG+    Q   L +   IV+ TPGR+  L+          S+
Sbjct  147  KALGSCLN---LRCSVIVGGMDMLTQTMSLVSRPHIVITTPGRIKVLLENNPDVPPVFSR  203

Query  364  VRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIM  423
             +FLVLDEAD +L  G+ D +  +   +P      K  Q ++ SAT+ S +++ L E   
Sbjct  204  TKFLVLDEADRVLDVGFQDELRTIFQCLP------KSRQTLLFSATMTS-NLQALLEHSS  256

Query  424  HFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPE  483
            +   + +        DT+    +  +     L+                           
Sbjct  257  NKAYFYEAYEGLKTVDTLTQQFIFEDKDAKELY---------------------------  289

Query  484  MWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCV  543
                        + +  +++  +  A+IF  T   C  L     +          +   +
Sbjct  290  ----------LVHILSQMEDKGIRSAMIFVSTCRTCQRLSLMLDEL---------EVENI  330

Query  544  CLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI  603
             +H       R   L +FK G V  L+ TDVA+RG+DI  V  VIN  +P + ++YVHR+
Sbjct  331  AMHSLNSQSMRLSALSKFKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRV  390

Query  604  GRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGC--YNTRLKEDGGCTIWYNEMQLLSE  661
            GR  RA R GLA+S++     K+ + +    GK    YN ++  D       ++ + ++ 
Sbjct  391  GRTARAGRGGLAVSIITETDVKLIHKIEEEVGKKMEPYNKKVITDSLEVTKVSKAKRVAM  450

Query  662  IEEHLNCTISQVEPDIKVPVDEFDGK  687
            ++   N    +V+   K+       K
Sbjct  451  MKMLDNGFEDKVKDRRKLKRKTLADK  476


 Score = 95.6 bits (236),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 42/103 (41%), Gaps = 9/103 (9%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F  +G+     +  +E+    PT +Q   +P IL G DVL  A+TGSGKT AF++P++
Sbjct  58   TNFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPIL  117

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
              + E                   +   +      ++  A   
Sbjct  118  HRLAEDPY---------GVFALVVTPTRELAFQLAEQFKALGS  151


>sp|P0CQ92|DRS1_CRYNJ ATP-dependent RNA helicase DRS1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=DRS1 PE=3 SV=1
Length=808

 Score = 282 bits (722),  Expect = 1e-82, Method: Composition-based stats.
 Identities = 108/493 (22%), Positives = 177/493 (36%), Gaps = 76/493 (15%)

Query  215  AFEIPPHMKNQALFP----ACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            AF            P    A  L    L+      +F  P      A+  A  G  +   
Sbjct  207  AFFSSDPTTTDPTLPSSFTAMNLSRPLLR-ALTSLQFTAPTPIQARAIPLALLGRDILGS  265

Query  271  HSGNAQVTQTKFLP--------------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNP  316
                +  T    +P               A + L++ P+RELA Q     K   +     
Sbjct  266  AVTGSGKTAAFMVPILERLCYRDRGKGGAACRVLVLCPTRELAVQCEAVGKALAEK-GGL  324

Query  317  KLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGL  375
             +R  L++GG++   Q   L    DI++ TPGRL D + +T    LS +  LV+DEAD +
Sbjct  325  DVRFALLVGGLSLNAQAHTLRTLPDILIATPGRLIDHLTNTPSFTLSALDVLVIDEADRM  384

Query  376  LSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED  435
            L  G++D +  +    P      +  Q ++ SAT+    V +L +  +  P  V +  + 
Sbjct  385  LEAGFTDELEEIIKACP------RSRQTMLFSATMTD-SVDELVKLSLDKPIRVFVDPKR  437

Query  436  SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGE  495
            +    +    V +     R    L                                    
Sbjct  438  NTARGLTQEFVRIRSDDSRSPSLLA-----------------------------------  462

Query  496  YAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERK  555
                  K    ++ IIF R+K     +   F   G              LHG+    +R 
Sbjct  463  ----LCKRTIREKCIIFFRSKALAHQMRIVFGLFG---------LKAAELHGNLTQEQRL  509

Query  556  QNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLA  615
            Q L  FK G V +L+ TD+A+RG+DI GV  VIN  +P +   Y HR+GR  RA R G +
Sbjct  510  QALNDFKAGTVDYLLATDLASRGLDIKGVETVINYDMPGQLAQYTHRVGRTARAGRKGRS  569

Query  616  ISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEP  675
            +SLV     K+               R+      T    +++   +  + +     + + 
Sbjct  570  VSLVGEADRKMLKAAIKQAEADQVRHRIIPSEAVTAMKEKLEEFKDDIQEILKEEKEEKL  629

Query  676  DIKVPVDEFDGKV  688
              +  ++   G+ 
Sbjct  630  LRQADMEIKKGQN  642


 Score = 104 bits (259),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 4/106 (4%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            ++F+ M +   + +A+  + +  PT IQA +IPL L G D+L +A TGSGKT AF +P++
Sbjct  222  SSFTAMNLSRPLLRALTSLQFTAPTPIQARAIPLALLGRDILGSAVTGSGKTAAFMVPIL  281

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            + +    +    GK G            +  +     G A A    
Sbjct  282  ERLCYRDR----GKGGAACRVLVLCPTRELAVQCEAVGKALAEKGG  323


>sp|P0CQ93|DRS1_CRYNB ATP-dependent RNA helicase DRS1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=DRS1 PE=3 SV=1
Length=808

 Score = 282 bits (722),  Expect = 1e-82, Method: Composition-based stats.
 Identities = 108/493 (22%), Positives = 177/493 (36%), Gaps = 76/493 (15%)

Query  215  AFEIPPHMKNQALFP----ACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            AF            P    A  L    L+      +F  P      A+  A  G  +   
Sbjct  207  AFFSSDPTTTDPTLPSSFTAMNLSRPLLR-ALTSLQFTAPTPIQARAIPLALLGRDILGS  265

Query  271  HSGNAQVTQTKFLP--------------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNP  316
                +  T    +P               A + L++ P+RELA Q     K   +     
Sbjct  266  AVTGSGKTAAFMVPILERLCYRDRGKGGAACRVLVLCPTRELAVQCEAVGKALAEK-GGL  324

Query  317  KLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGL  375
             +R  L++GG++   Q   L    DI++ TPGRL D + +T    LS +  LV+DEAD +
Sbjct  325  DVRFALLVGGLSLNAQAHTLRTLPDILIATPGRLIDHLTNTPSFTLSALDVLVIDEADRM  384

Query  376  LSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED  435
            L  G++D +  +    P      +  Q ++ SAT+    V +L +  +  P  V +  + 
Sbjct  385  LEAGFTDELEEIIKACP------RSRQTMLFSATMTD-SVDELVKLSLDKPIRVFVDPKR  437

Query  436  SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGE  495
            +    +    V +     R    L                                    
Sbjct  438  NTARGLTQEFVRIRSDDSRSPSLLA-----------------------------------  462

Query  496  YAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERK  555
                  K    ++ IIF R+K     +   F   G              LHG+    +R 
Sbjct  463  ----LCKRTIREKCIIFFRSKALAHQMRIVFGLFG---------LKAAELHGNLTQEQRL  509

Query  556  QNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLA  615
            Q L  FK G V +L+ TD+A+RG+DI GV  VIN  +P +   Y HR+GR  RA R G +
Sbjct  510  QALNDFKAGTVDYLLATDLASRGLDIKGVETVINYDMPGQLAQYTHRVGRTARAGRKGRS  569

Query  616  ISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEP  675
            +SLV     K+               R+      T    +++   +  + +     + + 
Sbjct  570  VSLVGEADRKMLKAAIKQAEADQVRHRIIPSEAVTAMKEKLEEFKDDIQEILKEEKEEKL  629

Query  676  DIKVPVDEFDGKV  688
              +  ++   G+ 
Sbjct  630  LRQADMEIKKGQN  642


 Score = 104 bits (259),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 4/106 (4%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            ++F+ M +   + +A+  + +  PT IQA +IPL L G D+L +A TGSGKT AF +P++
Sbjct  222  SSFTAMNLSRPLLRALTSLQFTAPTPIQARAIPLALLGRDILGSAVTGSGKTAAFMVPIL  281

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            + +    +    GK G            +  +     G A A    
Sbjct  282  ERLCYRDR----GKGGAACRVLVLCPTRELAVQCEAVGKALAEKGG  323


>sp|Q1E2B2|DRS1_COCIM ATP-dependent RNA helicase DRS1 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DRS1 PE=3 SV=1
Length=840

 Score = 283 bits (723),  Expect = 2e-82, Method: Composition-based stats.
 Identities = 107/473 (23%), Positives = 180/473 (38%), Gaps = 73/473 (15%)

Query  216  FEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIV--------  267
                    + + F    L    L+       F  P      A+     G  +        
Sbjct  309  PTKSEETSSNSTFQNFNLSRPILR-GLAAVGFSAPTPIQRKAIPVGLLGKDLVGGAVTGS  367

Query  268  -KSQHSGNAQVTQTKFLPNAP---KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLI  323
             K+       + +  + P      +  I+ P+RELA Q  N   +   Y D   +    +
Sbjct  368  GKTAAFIIPILERLLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTD---ITFCQL  424

Query  324  IGGVAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD  382
            +GG + R+Q +VL+   D+++ TPGR +D + ++    +  +  LVLDEAD +L  G++D
Sbjct  425  VGGFSLREQENVLKQRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFAD  484

Query  383  FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH  442
             +N + N IP      K  Q ++ SAT+    V KL    ++ P  + +  +     T+ 
Sbjct  485  ELNEILNTIP------KSRQTMLFSATMTD-SVDKLIRVGLNRPVRLMVDSKKHTVGTLV  537

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
               V + P  +                                       +  Y V    
Sbjct  538  QEFVRLRPGREG-------------------------------------KRMGYLVLLCN  560

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
                ++ I+F R K +       F   G              LHG     +R   +E F+
Sbjct  561  TIYTNRVIVFFRQKKEAHRARIIFGLLG---------LKAAELHGSMSQEQRINAVEAFR  611

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             G V FL+ TD+A+RG+DI GV  VIN   P   + Y+HR+GR  RA R G A ++ A  
Sbjct  612  DGKVPFLLATDLASRGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEP  671

Query  623  KEKVWYHVCSS--RGKGCYNTRLKEDGGCTIWYNEMQLLS-EIEEHLNCTISQ  672
              KV      +         +R+ +      W ++++ +  EIE+ L     +
Sbjct  672  DRKVVKAAVKAGRAQGAKIVSRVVDPAVADEWASKVEEMQAEIEDILKEEKEE  724


 Score = 109 bits (271),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 51/111 (46%), Gaps = 6/111 (5%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F    +   I + +  + +  PT IQ ++IP+ L G D++  A TGSGKT AF IP++
Sbjct  319  STFQNFNLSRPILRGLAAVGFSAPTPIQRKAIPVGLLGKDLVGGAVTGSGKTAAFIIPIL  378

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQ  112
            + +          +K  T+         +  +  Y+  +  A  +D   CQ
Sbjct  379  ERLLYRP------RKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQ  423


>sp|Q74Z73|HAS1_EREGS ATP-dependent RNA helicase HAS1 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=HAS1 PE=3 SV=2
Length=504

 Score = 274 bits (700),  Expect = 2e-82, Method: Composition-based stats.
 Identities = 80/429 (19%), Positives = 160/429 (37%), Gaps = 72/429 (17%)

Query  212  LGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQH  271
            L L+ +    +          ++   +                 +  +K   G  +    
Sbjct  44   LNLSSQTLKAIGKMGFTKMTQVQARTIP--------PLMAGRDVLGAAKTGSGKTLAFLL  95

Query  272  SGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
                 +   KF P N    +++ P+RELA Q     ++  ++         ++IGG   R
Sbjct  96   PAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQT---FGIVIGGANRR  152

Query  331  DQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHN  389
             +   L  GV++++ TPGRL D + +T       ++ LV+DEAD +L  G+ D + ++  
Sbjct  153  QEAEKLAKGVNLLIATPGRLLDHLQNTKGFVFKNLKALVIDEADRILEIGFEDEMKQIIK  212

Query  390  QIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH-FPTWVDLKGED--SVPDTVHHVVV  446
             +P      +  Q ++ SAT  +  V+ L+   +   P ++++  E   S  D +    V
Sbjct  213  ILP-----NEDRQSMLFSAT-QTTKVEDLARISLRPGPLFINVDSEKETSTADGLEQGYV  266

Query  447  PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM  506
              +                                           +       +K+ + 
Sbjct  267  VCDSDK----------------------------------------RFLLLFTFLKKFQN  286

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
             + I+F  +        +                  + LHG +K  +R      F   + 
Sbjct  287  KKIIVFLSSCNSVKYYAELL---------NYIDLPVLELHGKQKQQKRTNTFFEFCNAER  337

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER-MGLAISLVATEKEK  625
              L+CTDVAARG+DI  V ++I    PD+ ++Y+HR+GR  R  +  G ++  +   +  
Sbjct  338  GILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPHELG  397

Query  626  VWYHVCSSR  634
               ++ +++
Sbjct  398  FLRYLKAAK  406


 Score = 104 bits (259),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 49/93 (53%), Gaps = 5/93 (5%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F E+ +  +  +A+ +M +   T +QA +IP ++ G DVL AA+TGSGKT AF +P I++
Sbjct  41   FDELNLSSQTLKAIGKMGFTKMTQVQARTIPPLMAGRDVLGAAKTGSGKTLAFLLPAIEM  100

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
            ++      + G     T     +   +  +  +
Sbjct  101  LHSLKFKPRNG-----TGVIVITPTRELALQIF  128


>sp|Q7RYZ7|DBP8_NEUCR ATP-dependent RNA helicase dbp-8 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=dbp-8 PE=3 SV=1
Length=626

 Score = 278 bits (710),  Expect = 2e-82, Method: Composition-based stats.
 Identities = 104/421 (25%), Positives = 164/421 (39%), Gaps = 64/421 (15%)

Query  259  SKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKL  318
            S+   G  V         + Q    P+A   +I+ P+RELA Q +  +    +      L
Sbjct  239  SRTGSGKTVAFAVPI---LQQWAANPSAIFGVILTPTRELALQIMEQVIALSQ---PHVL  292

Query  319  RELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN----LSQVRFLVLDEADG  374
            + +LI GG   R Q   L     +V+ TPGRL D + T   +    L +V+F+VLDEAD 
Sbjct  293  KAVLITGGADMRKQAIDLAKRPHLVIATPGRLADHIRTSGEDTICGLRRVKFIVLDEADR  352

Query  375  LL-SQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG  433
            LL + G+   +  +      +    +  Q ++ +AT+   +VK LSE+            
Sbjct  353  LLANSGHGSMLPDVEECFSVLPPPSE-RQTLLFTATMTP-EVKALSER------------  398

Query  434  EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK  493
               +P      V  V+ +   +   L + H++    H +        +P           
Sbjct  399  -PPIPGRAPVFVCEVDTQRLAIPATLRQMHLQVPVTHREHYLHMFLLTP-----------  446

Query  494  GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
                     ++     IIFC      D               +        LH      +
Sbjct  447  ---------QNVDKSVIIFCNRTSTADF---------LHHLLRLLDHRVTSLHSKLPQSQ  488

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
            R  NL RF+    R L+ TDVAARG+DI  V  VIN  +P +  +Y+HR+GR  RA R G
Sbjct  489  RIDNLGRFRASAARILVATDVAARGLDIPEVKIVINYDIPRDPDDYIHRVGRTARAGRKG  548

Query  614  LAISLVATEKEKVWYHVCSSRGKGCY---------NTRLKEDGGCTIWYNEMQLLSEIEE  664
             A++ V      +   +    G+             TR+  D    +   + + L EIEE
Sbjct  549  DAVTFVGQRDVDLVLAIEQRVGRQMEAWTEEGVNLETRVIRDALKVVGEKKREALLEIEE  608

Query  665  H  665
             
Sbjct  609  Q  609


 Score = 99.0 bits (245),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 20/141 (14%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F  + V P + Q++  M    PT IQ   IP IL G D +  + TGSGKT AF++P++
Sbjct  195  TTFDALNVRPWLVQSLANMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPIL  254

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA----------IGSDGLCC  111
                     QQ             +   +  +   ++  A +           G   +  
Sbjct  255  ---------QQWAANPSAIFGVILTPTRELALQIMEQVIALSQPHVLKAVLITGGADMRK  305

Query  112  QSREV-KEWHGCRATKGLMKG  131
            Q+ ++ K  H   AT G +  
Sbjct  306  QAIDLAKRPHLVIATPGRLAD  326


>sp|Q38F76|IF4A_TRYB2 Probable eukaryotic initiation factor 4A 
OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) OX=185431 
GN=Tb09.160.3270 PE=3 SV=1
Length=404

 Score = 271 bits (692),  Expect = 2e-82, Method: Composition-based stats.
 Identities = 113/445 (25%), Positives = 191/445 (43%), Gaps = 70/445 (16%)

Query  210  KDLGLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIV  267
            +D     +  P ++    F    L    L+  ++ G E+     +   V  ++  D    
Sbjct  10   QDQDSFLDDQPGIRPIPSFDDMPLHQNLLRGIYSHGFEKPSSIQQRAIVPFTRGGDIIAQ  69

Query  268  KSQHSGNA------QVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI-DNPKLRE  320
                +G         + +  F  N  + L++ P+RELA QT   I +  +++ +      
Sbjct  70   AQSGTGKTGAFSIGLLQRLDFRHNVLQGLVLSPTRELAMQTAEVITRIGEFLAEGSSSFC  129

Query  321  LLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGY  380
               +GG   +D    L++G  + VGTPGR+ D+   G +    +R LVLDEAD +LSQG+
Sbjct  130  ATFVGGTRVQDDYRKLQSGTIVAVGTPGRVVDVTKRGAMRTESLRVLVLDEADEMLSQGF  189

Query  381  SDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDT  440
            ++ I  +   +P      K +QV + SAT+   DV +L++K M  PT + +K E    + 
Sbjct  190  AEQIYDIFRFLP------KEIQVALFSATMPD-DVLELTKKFMRDPTRILVKRESLTLEG  242

Query  441  VHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRA  500
            +    + V  +                                         K +  +  
Sbjct  243  IKQFFIAVEEEH----------------------------------------KLDTLMDL  262

Query  501  IKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLER  560
             +   + Q++IF  T+   D L                  +  C+H +    ER++ +  
Sbjct  263  YETVSIAQSVIFANTRRKVDWLASQL---------NSSNHTVSCMHSEMSKQEREKVMGT  313

Query  561  FKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            F+ G  R L+ TD+ ARGID+H V  VIN  LP  K+NY+HRIGR GR  R G+AI+ V 
Sbjct  314  FRNGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFVT  373

Query  621  TEKEKVWYHVCSSRGKGCYNTRLKE  645
             +  +V   + S      Y+T+++E
Sbjct  374  QKDVEVLREIESH-----YHTQIEE  393


 Score = 88.6 bits (218),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 32/154 (21%), Positives = 60/154 (39%), Gaps = 17/154 (11%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F +M +   + + +    +  P+ IQ  +I     GGD++  A++G+GKTGAFSI +
Sbjct  25   IPSFDDMPLHQNLLRGIYSHGFEKPSSIQQRAIVPFTRGGDIIAQAQSGTGKTGAFSIGL  84

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSA----FAIGSDGLCC----Q  112
            +Q +       Q             S   +  M   +  +      A GS   C      
Sbjct  85   LQRLDFRHNVLQ---------GLVLSPTRELAMQTAEVITRIGEFLAEGSSSFCATFVGG  135

Query  113  SREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCR  146
            +R   ++   ++   +  G     V    +G  R
Sbjct  136  TRVQDDYRKLQSGTIVAVGTPGRVVDVTKRGAMR  169


>sp|A5DDF4|PRP5_PICGU Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Meyerozyma guilliermondii (strain ATCC 6260 / 
CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 
GN=PRP5 PE=3 SV=2
Length=862

 Score = 283 bits (724),  Expect = 2e-82, Method: Composition-based stats.
 Identities = 110/498 (22%), Positives = 196/498 (39%), Gaps = 97/498 (19%)

Query  238  LKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN-----------A  286
            L+   G +           A+    D   V +  SG         + +            
Sbjct  281  LEEKLGYDTPSPIQSQALPAIMSGRDIIGVANTGSGKTLAFVIPLIRHIMDQPPLKSGDG  340

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            P  +I+ P+RELA Q    +  F + ++   L      GG     Q++ L+ G +I+VGT
Sbjct  341  PIGVILTPTRELALQIQKELVNFTQAVE---LSVCCCYGGSPIESQIADLKRGTEIIVGT  397

Query  347  PGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            PGR+ DL++       NL +  FLVLDEAD +   G+   +N++ +QI          Q+
Sbjct  398  PGRVIDLLAANGGRVTNLRRTTFLVLDEADRMFDMGFEPQVNKVLSQI------RPDKQM  451

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            ++ SAT     ++ L+   +  P  +   G   V   +   VV ++   D   ++L    
Sbjct  452  VLFSATFPK-KLESLARSFLVDPIEIVAGGISVVAPEITQRVVLIDDSGDISQKKLQALL  510

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
               D+   +D                                  + +IF   +   D+L 
Sbjct  511  KIVDEFSVED-------------------------------PEGKILIFVDKQEAADDLM  539

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK-KGDVRFLICTDVAARGIDIH  582
               +          +Q SC+ +HG +   +RK  +++F  K  +R LI T +AARG+D+ 
Sbjct  540  VRLLN---------NQISCIVIHGGKDQVDRKHAIKQFSDKNGLRVLIATSIAARGLDVR  590

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTR  642
            G+  VIN   P   ++YVHR+GR GRA   G A++LV + +E+    +  +         
Sbjct  591  GLNLVINYDAPSHMEDYVHRVGRTGRAGATGTAVTLVLSSQEREIRDLVRAM--------  642

Query  643  LKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYK  702
                                   ++  +  +  +++   D+F  KV  G+++   G   K
Sbjct  643  ----------------------KMSGKVDDIPAELQSIADKFLKKVKSGEEKFNSGFGGK  680

Query  703  G--HVDILAPTVQELAAL  718
            G  ++      V+E+   
Sbjct  681  GLENLQERRDNVREIEMQ  698


 Score = 109 bits (273),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 56/113 (50%), Gaps = 6/113 (5%)

Query  1    MAAFSEMGVMPEIAQAVEE-MDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
            +  ++++G+   I   +EE + +  P+ IQ++++P I+ G D++  A TGSGKT AF IP
Sbjct  265  IQKWAQLGLPSSIMTVLEEKLGYDTPSPIQSQALPAIMSGRDIIGVANTGSGKTLAFVIP  324

Query  60   VIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD-GLCC  111
            +I+ +     DQ   K G   I    +   +  +        F    +  +CC
Sbjct  325  LIRHIM----DQPPLKSGDGPIGVILTPTRELALQIQKELVNFTQAVELSVCC  373


>sp|Q4I830|DRS1_GIBZE ATP-dependent RNA helicase DRS1 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=DRS1 PE=3 SV=1
Length=796

 Score = 282 bits (720),  Expect = 2e-82, Method: Composition-based stats.
 Identities = 98/428 (23%), Positives = 166/428 (39%), Gaps = 70/428 (16%)

Query  219  PPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVAL------------SKAPDGYI  266
            P      + F    L    ++       F  P      ++            ++   G  
Sbjct  249  PDKKATASSFQTMSLSRPIMR-GLASVGFTKPTPIQAKSIPIALMGKDVVGGAETGSGKT  307

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
                     ++          + +++ P+RELA Q      +   + D   ++  L +GG
Sbjct  308  GAFILPILERLLYRPKKIPTTRVVVLLPTRELAIQCHAVATKLAAFTD---IKFTLAVGG  364

Query  327  VAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            ++ + Q   L+   D+++ TPGR +D + ++   ++  V  LVLDEAD +L  G++D +N
Sbjct  365  LSLKAQELELKLRPDVIIATPGRFIDHMRNSASFSVDTVEILVLDEADRMLEDGFADELN  424

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
             +   +P      K  Q ++ SAT+ S  V +L +  ++ P  V +  +     T+    
Sbjct  425  EILTTLP------KSRQTMLFSATMTS-SVDRLIQIGLNRPARVMVNSQKKTVTTLVQEF  477

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
            V + P  +                                       +  Y     K   
Sbjct  478  VRLRPGRE-------------------------------------DKRMGYLAHVCKNLY  500

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
             ++ IIF R K D       F   G          SC  LHG     +R  ++E F+ G 
Sbjct  501  KERVIIFFRQKKDAHRARIIFGLLG---------LSCAELHGSMNQTQRISSVEDFRDGK  551

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            V +L+ TD+A+RG+DI GV  VIN   P     YVHR+GR  RA R G+A+++ A    K
Sbjct  552  VAYLLATDLASRGLDIKGVDTVINYEAPQSLDIYVHRVGRTARAGRKGVALTIAAESDRK  611

Query  626  VWYHVCSS  633
            V      +
Sbjct  612  VVKAAVKA  619


 Score = 110 bits (274),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 6/106 (6%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            ++F  M +   I + +  + +  PT IQA+SIP+ L G DV+  AETGSGKTGAF +P++
Sbjct  256  SSFQTMSLSRPIMRGLASVGFTKPTPIQAKSIPIALMGKDVVGGAETGSGKTGAFILPIL  315

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            + +    K      K  TT         +  +  +   +  A  +D
Sbjct  316  ERLLYRPK------KIPTTRVVVLLPTRELAIQCHAVATKLAAFTD  355


>sp|Q54S03|DDX18_DICDI Probable ATP-dependent RNA helicase ddx18 
OS=Dictyostelium discoideum OX=44689 GN=ddx18 PE=3 SV=1
Length=602

 Score = 277 bits (707),  Expect = 2e-82, Method: Composition-based stats.
 Identities = 83/447 (19%), Positives = 170/447 (38%), Gaps = 76/447 (17%)

Query  197  DIDKGHVKFSKN---GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKD  253
            ++ +  +  SK      +L +       ++         ++   +               
Sbjct  106  NVSEKELGISKESIEFSNLPIEENTKKSIEEMGFKKMTPIQAKSI--------LPLLEGK  157

Query  254  GFVALSKAPDGYIVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKY  312
              +  ++   G  +         + ++ F P N    +I+ P+RELA Q     ++  KY
Sbjct  158  DLLGAARTGSGKTLAFLIPAIEVLVKSNFKPRNGTGVIIISPTRELALQIYGVARELMKY  217

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDE  371
                     ++IGG + + +   LE GV+++V TPGRL D + +T       ++ L++DE
Sbjct  218  HTQTH---GIVIGGASKKPEEERLEKGVNLLVATPGRLLDHLQNTKGFITKNLKCLIIDE  274

Query  372  ADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF-PTWVD  430
            AD +L  G+ + ++++  ++P      K  Q ++ SAT  +  V  +++  ++  P +V 
Sbjct  275  ADRILEVGFEEEMHQIIKKVP------KTRQTMLFSAT-QTRKVDDIAKVSLNNSPVYVG  327

Query  431  LKGED--SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEA  488
            +  E   S  + +    V    +                                     
Sbjct  328  VDDEREISTVEGLEQGYVVCPSER------------------------------------  351

Query  489  IKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGD  548
                +       +K++   + I+F  +        +                  + LHG 
Sbjct  352  ----RFLLLYTFLKKNLSKKIIVFLSSCNAVKYTAELL---------NYIDIPVLELHGR  398

Query  549  RKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
            +K  +R      F   +   LICTDVAARG+DI  V ++I    PD+ + Y+HR+GR  R
Sbjct  399  QKQQKRTNTFYEFVNAEKGILICTDVAARGLDIPSVDWIIQYDPPDDPKEYIHRVGRTAR  458

Query  609  A-ERMGLAISLVATEKEKVWYHVCSSR  634
               + G A+  +  ++     ++  ++
Sbjct  459  GVGKKGRALLFLLPKELGFLKYLKLAK  485


 Score = 101 bits (252),  Expect = 5e-21, Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 8/117 (7%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS + +     +++EEM +   T IQA+SI  +L G D+L AA TGSGKT AF IP I++
Sbjct  121  FSNLPIEENTKKSIEEMGFKKMTPIQAKSILPLLEGKDLLGAARTGSGKTLAFLIPAIEV  180

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY---DRGSAFAIGSDGLCCQSREVK  117
            + ++    + G     T     S   +  +  Y        +   + G+       K
Sbjct  181  LVKSNFKPRNG-----TGVIIISPTRELALQIYGVARELMKYHTQTHGIVIGGASKK  232


>sp|Q8L4E9|RH36_ORYSJ DEAD-box ATP-dependent RNA helicase 36 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os07g0633500 PE=3 
SV=1
Length=501

 Score = 273 bits (699),  Expect = 2e-82, Method: Composition-based stats.
 Identities = 103/453 (23%), Positives = 174/453 (38%), Gaps = 69/453 (15%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNI  306
             +       + +++   G            + +    P    AL + P+RELA Q     
Sbjct  109  PRALEGRDVLGIAETGSGKTAAFALPI---LHRLGEDPYGVAALALAPTRELAAQLAEQF  165

Query  307  KQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQV--  364
            +     +    LR L  IGG  +  Q   L     +VV TPGR+  L++    +L++V  
Sbjct  166  RALGAPLG---LRCLAAIGGFDSLGQAKGLARRPHVVVATPGRIATLINDDP-DLAKVFA  221

Query  365  --RFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKI  422
              +FLVLDEAD +L   + + +  +   +P      K+ Q  + SAT+ S +++ L E  
Sbjct  222  RTKFLVLDEADRVLDINFEEDLRVIFGSLP------KKRQTFLFSATI-SDNLRSLLELS  274

Query  423  MHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSP  482
             +   + +        DT+  + + V P    L+                          
Sbjct  275  GNNSYFFEAYEGFKTVDTLKQLYIHVPPDAKELYLF------------------------  310

Query  483  EMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSC  542
                         Y +  + E  +   I+F  T   C  L+    + G            
Sbjct  311  -------------YLLSKMNEDNIRSVIVFVSTCRTCQYLDFLLEELG---------HPA  348

Query  543  VCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHR  602
            V LH  +    R   L  FK   V  L+ TDVA+RG+DI  V  VIN  +P   ++Y+HR
Sbjct  349  VSLHSHKPQSRRLAALHNFKSSKVPVLLATDVASRGLDIQTVDLVINYDVPRYPRDYIHR  408

Query  603  IGRVGRAERMGLAISLVATEKE-KVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE  661
            +GR  RA R GL+IS + T+++ ++ + +    GK         DG       +   + +
Sbjct  409  VGRTARATRGGLSISFITTQRDIRLLHEIEDVVGKQLGAY----DGEMRDVNKDATKVFK  464

Query  662  IEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKR  694
                 N  ++    + KV   +   K    +KR
Sbjct  465  ARRLANMKMADEGHEDKVQARKEQKKRAQERKR  497


 Score = 102 bits (253),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 33/140 (24%), Positives = 54/140 (39%), Gaps = 20/140 (14%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F+E+G+   +    + +   +PT +Q   IP  L G DVL  AETGSGKT AF++P++
Sbjct  77   STFAELGLSQWLVDVCDSLGMRVPTAVQRRCIPRALEGRDVLGIAETGSGKTAAFALPIL  136

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI-----------GSDGLC  110
              +         G+          +   +      ++  A              G D L 
Sbjct  137  HRL---------GEDPYGVAALALAPTRELAAQLAEQFRALGAPLGLRCLAAIGGFDSLG  187

Query  111  CQSREVKEWHGCRATKGLMK  130
                  +  H   AT G + 
Sbjct  188  QAKGLARRPHVVVATPGRIA  207


>sp|Q2U8K6|DBP5_ASPOR ATP-dependent RNA helicase dbp5 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp5 
PE=3 SV=1
Length=487

 Score = 273 bits (698),  Expect = 3e-82, Method: Composition-based stats.
 Identities = 107/514 (21%), Positives = 199/514 (39%), Gaps = 111/514 (22%)

Query  199  DKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVAL  258
                +   K+ +DLGL   I   +          ++   L                 V  
Sbjct  70   PNNPLYSVKSFEDLGLDPRILQGLSAMNFRKPSKIQERALPLLLNNPP------KNLVGQ  123

Query  259  SKAPDGYIVKSQHSGNAQVTQ-TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPK  317
            S++  G       +  +++   T+     P+ALI+ P+RELA Q +  I+   +++D   
Sbjct  124  SQSGTGKTAAFVLNALSRLDLSTEQAQKTPQALILAPTRELARQIVGVIQCMGQFLDGLN  183

Query  318  LRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLS  377
            +   +      A       +    +VVGTPG + D++    +  ++++ LVLDEAD +L 
Sbjct  184  VSTAV-----PADTNSRHSKIESSVVVGTPGTVMDMIRKRVMVANKLKVLVLDEADNMLD  238

Query  378  -QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDS  436
             QG  D   R+   +P      K +QV++ SAT  +  V + + K       + L+ E+ 
Sbjct  239  QQGLGDQCIRVKALLP------KDIQVVLFSATFPTH-VHQYASKFAPQANELTLQHEEL  291

Query  437  VPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEY  496
              + +  + +  + + D+    +    + T                              
Sbjct  292  TVEGIKQLYLDCSDEEDKYKTLVQLYGLLT------------------------------  321

Query  497  AVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQ  556
                     +  +IIF +T+     +E+  + +G          +   L G  +  +R  
Sbjct  322  ---------VASSIIFVKTRASAAEIEKRMVAEG---------HTVASLTGGIEGSQRDA  363

Query  557  NLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD-----------EKQNYVHRIGR  605
             +++F+ G  + LI T+V ARGID+  V  VIN  +P+           + Q Y+HRIGR
Sbjct  364  VIDQFRAGQAKVLITTNVLARGIDVSTVSMVINYDIPELHQPGAPERQADFQTYLHRIGR  423

Query  606  VGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEH  665
             GR  R+G++IS V+  +E                                 +L++I+++
Sbjct  424  TGRFGRVGVSISFVSNREE-------------------------------WNMLNQIQQY  452

Query  666  LNCTISQVE-PDIKVPVDEFDGKVTYGQKRAAGG  698
             NCTI +V+  D     D     +   + +A  G
Sbjct  453  FNCTIQRVDTKDWDEVEDIIKKTIKNTRAQAQFG  486


 Score = 87.5 bits (215),  Expect = 9e-17, Method: Composition-based stats.
 Identities = 24/116 (21%), Positives = 51/116 (44%), Gaps = 7/116 (6%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            + +F ++G+ P I Q +  M++  P+ IQ  ++PL+L     +++  +++G+GKT AF +
Sbjct  77   VKSFEDLGLDPRILQGLSAMNFRKPSKIQERALPLLLNNPPKNLVGQSQSGTGKTAAFVL  136

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSR  114
              +  +  + +  Q     KT      +   +                DGL   + 
Sbjct  137  NALSRLDLSTEQAQ-----KTPQALILAPTRELARQIVGVIQCMGQFLDGLNVSTA  187


>sp|Q59W52|PRP28_CANAL Pre-mRNA-splicing ATP-dependent RNA helicase 
PRP28 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) 
OX=237561 GN=PRP28 PE=3 SV=2
Length=581

 Score = 276 bits (705),  Expect = 3e-82, Method: Composition-based stats.
 Identities = 98/424 (23%), Positives = 181/424 (43%), Gaps = 71/424 (17%)

Query  222  MKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ-------HSGN  274
            +          ++ A +             K   V +++   G  +           S +
Sbjct  183  ISQLGYEEPTSVQRASIPLAL--------KKRDVVGVAETGSGKTLAFLIPVLNYILSID  234

Query  275  AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLS  334
                + + + N P  LI+ P+RELA Q     ++F K +     + L IIGG   +D ++
Sbjct  235  ENYLKYEKISNEPVGLILAPTRELALQITKEAEKFCKKLG---YQVLPIIGGHHYQDTIN  291

Query  335  VL-ENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ  393
             + + GV ++V TPGRL D +    ++LS+   LV+DEAD ++  G+   +N++ +++P 
Sbjct  292  KIDQTGVHLIVATPGRLVDSIERKIVDLSKCYCLVMDEADRMIDMGFEKDLNKVLDKLPT  351

Query  394  VTS----------DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHH  443
                           ++   ++ +AT+ S  V+KL++K +  P ++ + G     D +  
Sbjct  352  EKQLSSTIDGRIFHLEKRSTMMFTATI-SPTVEKLTKKYLIDPGYLYIGGAGEALDNISQ  410

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
                ++  T                                +++ IKI++  + V     
Sbjct  411  SFEFLSSAT---------------------------TEATKFNKLIKIIRSHWRVT----  439

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
             +    IIF   K  CD+L Q             +  + V +HG +    R+Q +  F+ 
Sbjct  440  -ENPLIIIFANFKHVCDSLSQEL---------SSNDINNVVIHGSKSQDMREQAITNFRN  489

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
             +   LI TDVAARGIDI  V  VIN  +  +   Y+HRIGR GRA  +G + + ++ + 
Sbjct  490  HESEVLIATDVAARGIDIPNVTLVINYQMVKKFDEYIHRIGRTGRAGNLGESFTFISDQD  549

Query  624  EKVW  627
             +++
Sbjct  550  TEIF  553


 Score = 97.5 bits (241),  Expect = 9e-20, Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 1/100 (1%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            ++E  +  ++   + ++ +  PT +Q  SIPL L   DV+  AETGSGKT AF IPV+  
Sbjct  170  WNEGSINDKLVSIISQLGYEEPTSVQRASIPLALKKRDVVGVAETGSGKTLAFLIPVLNY  229

Query  64   VYETLKD-QQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            +    ++  +  K     +    +   +  +        F
Sbjct  230  ILSIDENYLKYEKISNEPVGLILAPTRELALQITKEAEKF  269


>sp|Q0CZN5|DRS1_ASPTN ATP-dependent RNA helicase drs1 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=drs1 
PE=3 SV=1
Length=821

 Score = 281 bits (719),  Expect = 5e-82, Method: Composition-based stats.
 Identities = 104/452 (23%), Positives = 180/452 (40%), Gaps = 67/452 (15%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            ++ ++  L+  I   +          ++   +                 V  +    G  
Sbjct  304  RSFQEFNLSRPILRGLAAVNFTNPTPIQRKTIPVAL--------LGKDIVGSAVTGSGKT  355

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
                     ++          +  I+ P+RELA Q  N   +   Y D   +    ++GG
Sbjct  356  AAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTD---ITFCQLVGG  412

Query  327  VAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
             + R+Q ++L+   D+++ TPGR +D + ++    +  +  LVLDEAD +L  G++D +N
Sbjct  413  FSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELN  472

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
             +   IP      K  Q ++ SAT+    V KL    ++ P  + +  + +   T+    
Sbjct  473  EILTTIP------KSRQTMLFSATMTDT-VDKLIRVGLNRPVRLMVDSKKNTSLTLVQEF  525

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
            V + P   R  +RLG                                   Y +   KE  
Sbjct  526  VRLRP--GREDKRLG-----------------------------------YLLYLCKEIY  548

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
              + I+F R K +   +   F   G              LHG     +R +++E F+ G 
Sbjct  549  TGRVIVFFRQKREAHRVRIVFGLLG---------LKAAELHGSMSQEQRIKSVENFRDGK  599

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            V FL+ TD+A+RG+DI GV  VIN   P   + Y+HR+GR  RA R G A ++ A    K
Sbjct  600  VAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRK  659

Query  626  VWY-HVCSSRGKGCY-NTRLKEDGGCTIWYNE  655
            V    V +S+ +G    +R+ +      W  +
Sbjct  660  VVKAAVKASKAQGAKVASRVVDPAVADQWAKK  691


 Score = 108 bits (270),  Expect = 5e-23, Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 54/111 (49%), Gaps = 6/111 (5%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +F E  +   I + +  +++  PT IQ ++IP+ L G D++ +A TGSGKT AF +P++
Sbjct  304  RSFQEFNLSRPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPIL  363

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQ  112
            + +          +K  T+         +  +  Y+  +  A  +D   CQ
Sbjct  364  ERLLFRP------RKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQ  408


>sp|A1CIQ5|HAS1_ASPCL ATP-dependent RNA helicase has1 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=has1 PE=3 SV=1
Length=625

 Score = 276 bits (706),  Expect = 5e-82, Method: Composition-based stats.
 Identities = 85/429 (20%), Positives = 158/429 (37%), Gaps = 72/429 (17%)

Query  212  LGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQH  271
            LGL+ +    +          ++   +                 +  +K   G  +    
Sbjct  148  LGLSEKTLKAINEMGFETMTEIQRRTIPPLLA--------GRDVLGAAKTGSGKTLSFLI  199

Query  272  SGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
                 ++  +F P N    L+V P+RELA Q     ++  ++         ++IGG   R
Sbjct  200  PAVEMLSALRFKPRNGTGVLVVSPTRELALQIFGVARELCQHHSQTY---GIVIGGANRR  256

Query  331  DQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHN  389
             +   L  GV++++ TPGRL D + +T       ++ LV+DEAD +L  G+ D + ++  
Sbjct  257  AEAEKLMKGVNLLIATPGRLLDHLQNTQGFVFKNLKTLVIDEADRILEVGFEDEMRQIVK  316

Query  390  QIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH-FPTWVDLK--GEDSVPDTVHHVVV  446
             +P      +  Q ++ SAT  +  V+ L+   +   P ++++    E S  + +    V
Sbjct  317  ILP-----SEERQTMLFSAT-QTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYV  370

Query  447  PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM  506
                                                          +       +K +  
Sbjct  371  ICEADK----------------------------------------RFLLLFSFLKRNLK  390

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
             + I+F  +        +                  + LHG +K  +R      F     
Sbjct  391  KKIIVFFSSCNCVKYHAELL---------NYIDLPVLELHGKQKQQKRTNTFFEFCNAKQ  441

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR-AERMGLAISLVATEKEK  625
              LICTDVAARG+DI  V ++I    PD+ ++Y+HR+GR  R A   G ++  +   +  
Sbjct  442  GTLICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGANAKGRSLMFLQPSEVG  501

Query  626  VWYHVCSSR  634
               H+  +R
Sbjct  502  FLKHLKEAR  510


 Score = 107 bits (266),  Expect = 9e-23, Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 50/93 (54%), Gaps = 5/93 (5%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+E+G+  +  +A+ EM +   T+IQ  +IP +L G DVL AA+TGSGKT +F IP +++
Sbjct  145  FTELGLSEKTLKAINEMGFETMTEIQRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVEM  204

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
            +       + G     T     S   +  +  +
Sbjct  205  LSALRFKPRNG-----TGVLVVSPTRELALQIF  232


>sp|Q27268|DX39B_DROME ATP-dependent RNA helicase WM6 OS=Drosophila 
melanogaster OX=7227 GN=Hel25E PE=1 SV=1
Length=424

 Score = 270 bits (690),  Expect = 6e-82, Method: Composition-based stats.
 Identities = 114/500 (23%), Positives = 192/500 (38%), Gaps = 108/500 (22%)

Query  183  GEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNF  242
             +E    D  G Y+ I       S   +D  L  EI   + +        +++  +    
Sbjct  23   NQEAPKKDVKGTYVSIH------SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIP---  73

Query  243  GEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN-APKALIVEPSRELAEQ  301
                       G   L +A  G   K+     A + Q +   N     L++  +RELA Q
Sbjct  74   -------QAVLGMDILCQAKSGM-GKTAVFVLATLQQLEPSDNNTCHVLVMCHTRELAFQ  125

Query  302  TLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG-VDIVVGTPGRLDDLVSTGKLN  360
                 ++F KY+  P ++  +  GG+A +     L++G   IVVGTPGR+  L+   KLN
Sbjct  126  ISKEYERFSKYM--PTVKVAVFFGGMAIQKDEETLKSGTPHIVVGTPGRILALIRNKKLN  183

Query  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
            L  ++  VLDE D +L       + R   +I + T  GK  QV++ SATL S D++ + +
Sbjct  184  LKLLKHFVLDECDKMLE---QLDMRRDVQEIFRSTPHGK--QVMMFSATL-SKDIRPVCK  237

Query  421  KIMHFPTWVDLKGEDS-VPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGA  479
            K M  P  V +  E       +    V +                               
Sbjct  238  KFMQDPMEVYVDDEAKLTLHGLQQHYVNLKENE---------------------------  270

Query  480  NSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQ  539
                         K +     +   + +Q +IF ++   C  L Q   +Q          
Sbjct  271  -------------KNKKLFELLDVLEFNQVVIFVKSVQRCVALSQLLTEQ---------N  308

Query  540  FSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNY  599
            F  + +H      ER    ++FK    R L+ T++  RG+DI  V  V N  +P++   Y
Sbjct  309  FPAIGIHRGMTQEERLNRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTY  368

Query  600  VHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLL  659
            +HR+ R GR    GLAI+ V+ E                               N+ ++L
Sbjct  369  LHRVARAGRFGTKGLAITFVSDE-------------------------------NDAKIL  397

Query  660  SEIEEHLNCTISQVEPDIKV  679
            +E+++  +  IS++  +I +
Sbjct  398  NEVQDRFDVNISELPEEIDL  417


 Score = 79.8 bits (195),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 27/123 (22%), Positives = 54/123 (44%), Gaps = 1/123 (1%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F +  + PEI +A+ +  +  P+++Q E IP  + G D+L  A++G GKT  F +  +
Sbjct  41   SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL  100

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQ-MNPYDRGSAFAIGSDGLCCQSREVKEWH  120
            Q +  +  +         T +    +  +++  + Y      A+   G+  Q  E     
Sbjct  101  QQLEPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGMAIQKDEETLKS  160

Query  121  GCR  123
            G  
Sbjct  161  GTP  163


>sp|A2QAX7|DRS1_ASPNC ATP-dependent RNA helicase drs1 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=drs1 PE=3 SV=1
Length=824

 Score = 281 bits (718),  Expect = 6e-82, Method: Composition-based stats.
 Identities = 111/533 (21%), Positives = 199/533 (37%), Gaps = 86/533 (16%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            ++ ++  L+  I   +          ++   +                 V  +    G  
Sbjct  309  RSFQEFNLSRPILRGLAGVNFSNPTPIQRKTIPVAL--------LGKDIVGSAVTGSGKT  360

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
                     ++          +  I+ P+RELA Q  N   +   Y D   +    ++GG
Sbjct  361  AAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTD---ITFCQLVGG  417

Query  327  VAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
             + R+Q ++L+   D+++ TPGR +D + ++    +  +  LVLDEAD +L  G++D +N
Sbjct  418  FSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELN  477

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
             +   IP      K  Q ++ SAT+    V KL    ++ P  + +  + +   T+    
Sbjct  478  EILTTIP------KSRQTMLFSATMTDT-VDKLIRVGLNRPVRLMVDAKKNTAVTLVQEF  530

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
            V + P   R  +RLG                                   Y +   KE  
Sbjct  531  VRLRP--GREDKRLG-----------------------------------YLLYLCKEIY  553

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
              + I+F R K +   +   F   G              LHG     +   ++E F++G 
Sbjct  554  TGRVIVFFRQKKEAHRVRIIFGLLG---------LKAAELHGSMSQEQ---SVENFREGK  601

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
              FL+ TD+A+RG+DI GV  VIN   P   + Y+HR+GR  RA R G A ++ A    K
Sbjct  602  AAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRK  661

Query  626  VWYHVCSSRGKG--CYNTRLKEDGGCTIWYNEMQLLSEI------EEHLNCTISQVEPDI  677
            V      +         +R+ E      W  + + L++       EE L   ++Q E  +
Sbjct  662  VVKAAVKAGKSQGAKIASRVIEPAVADSWAAKAEELADEVEEVLSEEKLEKQLAQAEMQV  721

Query  678  KV---------PVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKE  721
                        +     +  +  +R        G  ++  P    ++  EK+
Sbjct  722  TKGENLIKHEAEIKSRPKRTWFETERDKKAARKLGAAELNGPDA-GMSKKEKQ  773


 Score = 107 bits (266),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 54/111 (49%), Gaps = 6/111 (5%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +F E  +   I + +  +++  PT IQ ++IP+ L G D++ +A TGSGKT AF +P++
Sbjct  309  RSFQEFNLSRPILRGLAGVNFSNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPIL  368

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQ  112
            + +          +K  T+         +  +  Y+  +  A  +D   CQ
Sbjct  369  ERLLFRP------RKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQ  413


>sp|Q4E162|IF4A_TRYCC Probable eukaryotic initiation factor 4A 
OS=Trypanosoma cruzi (strain CL Brener) OX=353153 GN=Tc00.1047053511585.190 
PE=3 SV=1
Length=404

 Score = 269 bits (688),  Expect = 6e-82, Method: Composition-based stats.
 Identities = 113/445 (25%), Positives = 190/445 (43%), Gaps = 70/445 (16%)

Query  210  KDLGLAFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIV  267
            +D     +  P ++    F    L    L+  ++ G E+     +   V  ++  D    
Sbjct  10   QDQDSFLDDQPGIRPIPSFDDMPLHQNLLRGIYSHGFEKPSSIQQRAIVPFTRGGDIIAQ  69

Query  268  KSQHSGNA------QVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLR-E  320
                +G         + +  F  N  + L++ P+RELA QT   I +  +++        
Sbjct  70   AQSGTGKTGAFSIGLLQRLDFRHNVLQGLVLSPTRELALQTAEVITRIGEFLAEGNSSFC  129

Query  321  LLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGY  380
               +GG   +D    L+ G  + VGTPGR+ D+   G +    +R LVLDEAD +LSQG+
Sbjct  130  ATFVGGTRVQDDYRKLQAGSIVAVGTPGRVVDVTKRGAMRTEHLRVLVLDEADEMLSQGF  189

Query  381  SDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDT  440
            ++ I  +   +P      K +QV + SAT+   DV +L++K M  PT + +K E    + 
Sbjct  190  AEQIYEIFRYLP------KEIQVALFSATMPD-DVLELTKKFMRDPTRILVKRESLTLEG  242

Query  441  VHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRA  500
            +    + V  +                                         K +  +  
Sbjct  243  IKQYFIAVEEEH----------------------------------------KLDTLMDL  262

Query  501  IKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLER  560
             +   + Q++IF  T+   D L Q   Q            +  C+H +    +R++ +  
Sbjct  263  YETVSIAQSVIFANTRRKVDWLAQQLNQ---------SNHTVSCMHSEMPKQDREKVMST  313

Query  561  FKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            F+ G  R L+ TD+ ARGID+H V  VIN  LP  K++Y+HRIGR GR  R G+AI+ V 
Sbjct  314  FRNGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKESYLHRIGRGGRYGRKGVAINFVT  373

Query  621  TEKEKVWYHVCSSRGKGCYNTRLKE  645
             +  +V   + S      Y+T++ E
Sbjct  374  QKDVEVLREIESH-----YHTQIDE  393


 Score = 88.6 bits (218),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 60/154 (39%), Gaps = 17/154 (11%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F +M +   + + +    +  P+ IQ  +I     GGD++  A++G+GKTGAFSI +
Sbjct  25   IPSFDDMPLHQNLLRGIYSHGFEKPSSIQQRAIVPFTRGGDIIAQAQSGTGKTGAFSIGL  84

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSA----FAIGSDGLCC----Q  112
            +Q +       Q             S   +  +   +  +      A G+   C      
Sbjct  85   LQRLDFRHNVLQ---------GLVLSPTRELALQTAEVITRIGEFLAEGNSSFCATFVGG  135

Query  113  SREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCR  146
            +R   ++   +A   +  G     V    +G  R
Sbjct  136  TRVQDDYRKLQAGSIVAVGTPGRVVDVTKRGAMR  169


>sp|Q1EB85|DBP5_COCIM ATP-dependent RNA helicase DBP5 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DBP5 PE=3 SV=1
Length=495

 Score = 272 bits (696),  Expect = 7e-82, Method: Composition-based stats.
 Identities = 102/438 (23%), Positives = 176/438 (40%), Gaps = 79/438 (18%)

Query  199  DKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVAL  258
                +   K+ ++LGLA  I   +          ++   L                 +A 
Sbjct  84   PNNPLYSIKSFEELGLAEPIQMGLSKMNFRRPSKIQERALPLLMANPP------TNMIAQ  137

Query  259  SKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKL  318
            S++  G       +  +++  T     +P+AL++ PSRELA Q +  I+    +++   +
Sbjct  138  SQSGTGKTAAFVLNILSRLELTPEKQKSPQALVLAPSRELARQIVGVIQAMGTFVEGLFV  197

Query  319  RELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLS-  377
               +        +          IVVGTPG + DL+     N   +R LVLDEAD +L  
Sbjct  198  ATAV------PMEMNRNQRVEASIVVGTPGTVQDLIKKRLFNTQHLRVLVLDEADNMLDQ  251

Query  378  QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSV  437
            QG  D   R+ + +P      + +QV++ SAT   F V+  + K       + LK E+  
Sbjct  252  QGLGDQCIRVKSLLP------RTIQVVLFSATFPDFVVR-YAHKFAPNSNQLTLKHEELT  304

Query  438  PDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYA  497
             + +  + +                                              K E  
Sbjct  305  VEGIKQLYLDCESDEH---------------------------------------KYEIL  325

Query  498  VRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQN  557
            V+      +  +IIF +T+     +E+  + +G          + V L G  +  +R + 
Sbjct  326  VKFYGLLTIGSSIIFVKTRASAAEIERRMVAEG---------HTVVSLTGGIEGQKRDEI  376

Query  558  LERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD-----------EKQNYVHRIGRV  606
            ++RF+ G  + LI T+V ARGID+  V  VIN  +P+           + Q Y+HRIGR 
Sbjct  377  IDRFRNGTAKVLITTNVLARGIDVSTVSMVINYDIPELHLPGAARRMADAQTYLHRIGRT  436

Query  607  GRAERMGLAISLVATEKE  624
            GR  R+G+A+S V+ ++E
Sbjct  437  GRFGRVGVAVSFVSNQEE  454


 Score = 82.1 bits (201),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 53/120 (44%), Gaps = 8/120 (7%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            + +F E+G+   I   + +M++  P+ IQ  ++PL++     +++  +++G+GKT AF +
Sbjct  91   IKSFEELGLAEPIQMGLSKMNFRRPSKIQERALPLLMANPPTNMIAQSQSGTGKTAAFVL  150

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKE  118
             ++  +  T + Q      K+      +   +          A     +GL   +    E
Sbjct  151  NILSRLELTPEKQ------KSPQALVLAPSRELARQIVGVIQAMGTFVEGLFVATAVPME  204


>sp|A7F4L5|DRS1_SCLS1 ATP-dependent RNA helicase drs1 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=drs1 PE=3 SV=1
Length=801

 Score = 280 bits (716),  Expect = 9e-82, Method: Composition-based stats.
 Identities = 106/481 (22%), Positives = 183/481 (38%), Gaps = 78/481 (16%)

Query  226  ALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKA------------PDGYIVKSQHSG  273
            + F +  L    L+       F  P       +  A              G         
Sbjct  268  STFQSMSLSRPILR-GLATVGFTQPTPIQSKTIPVALLGKDVVGGAVTGSGKTAAFIVPV  326

Query  274  NAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQL  333
              ++          +  I+ P+RELA Q      +   + D   ++  L +GG++ + Q 
Sbjct  327  LERLLYRPKKVPTSRVAILMPTRELAIQCHAVATKLASHTD---IKFCLAVGGLSLKVQE  383

Query  334  SVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP  392
            + L    D+++ TPGR +D + ++    +  +  LVLDEAD +L  G++D +N +   IP
Sbjct  384  AELRLRPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEAGFADELNEILTTIP  443

Query  393  QVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKT  452
                  K  Q ++ SAT+ S  V  L    ++ P  + +  + S   T+    + + P  
Sbjct  444  ------KSRQTMLFSATM-SSSVDNLIRVGLNRPVRLLVDSQKSTAGTLTQEFIRLRPGR  496

Query  453  DRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF  512
            +                                       +  Y +        D+ I+F
Sbjct  497  EG-------------------------------------KRMGYLLYLCANVYTDRVIVF  519

Query  513  CRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICT  572
             R K +       F   G              LHG     +R +++E F+ G   FL+ T
Sbjct  520  FRQKKEAHRARIIFGLSG---------LKATELHGSMSQEQRIKSVEAFRDGKASFLLAT  570

Query  573  DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY-HVC  631
            D+A+RG+DI GV  VIN   P     Y+HR+GR  RA R G A ++ A    KV    V 
Sbjct  571  DLASRGLDIKGVDTVINYEAPQSHDIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVK  630

Query  632  SSRGKGCY-NTRLKEDGGCTIWYNEMQLLS------EIEEHLNCTISQVEPDIKVPVDEF  684
            +SR +G    +R+ E      W  ++  ++        EE  +  ++Q E +++   +  
Sbjct  631  ASRTQGAKVVSRVIEASEADSWSEKVDEMADEIEEILKEEKEDKILAQAEMEVRKGQNFM  690

Query  685  D  685
            D
Sbjct  691  D  691


 Score = 107 bits (268),  Expect = 7e-23, Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 6/106 (6%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F  M +   I + +  + +  PT IQ+++IP+ L G DV+  A TGSGKT AF +PV+
Sbjct  268  STFQSMSLSRPILRGLATVGFTQPTPIQSKTIPVALLGKDVVGGAVTGSGKTAAFIVPVL  327

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            + +    K      K  T+         +  +  +   +  A  +D
Sbjct  328  ERLLYRPK------KVPTSRVAILMPTRELAIQCHAVATKLASHTD  367


>sp|Q4IEK8|HAS1_GIBZE ATP-dependent RNA helicase HAS1 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=HAS1 PE=3 SV=2
Length=591

 Score = 275 bits (702),  Expect = 9e-82, Method: Composition-based stats.
 Identities = 88/444 (20%), Positives = 162/444 (36%), Gaps = 79/444 (18%)

Query  208  NGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVAL---------  258
            NG  L L    P        F    L    +K    E +F    +     +         
Sbjct  100  NGGQLTLP---PVAGAEAQSFEELKLSEKTMK-AINEMKFTKMTEIQRRGIPPSLAGRDV  155

Query  259  ---SKAPDGYIVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYID  314
               +K   G  +         ++  +F P N    ++V P+RELA Q     ++   +  
Sbjct  156  LGAAKTGSGKTLAFLIPVIEMLSSLRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHS  215

Query  315  NPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADG  374
                   ++IGG   R +   L  GV++++ TPGRL D +         ++ LV+DEAD 
Sbjct  216  QTY---GIVIGGANRRAEAEKLAKGVNLLIATPGRLLDHLQNTPFVFKNLKSLVIDEADR  272

Query  375  LLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH-FPTWVDLKG  433
            +L  G+ D + ++   +P+     +  Q ++ SAT  +  V+ L+   +   P ++++  
Sbjct  273  ILEIGFEDEMRQIIKVLPK-----EDRQTMLFSAT-QTTKVEDLARISLRPGPLYINVDE  326

Query  434  ED--SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
            E   S  + +    +                                             
Sbjct  327  EKQYSTVEGLEQGYIICETD----------------------------------------  346

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
            ++       +K +   + I+F  +        +                  + LHG +K 
Sbjct  347  MRFLLLFSFLKRNLKKKIIVFFSSCACVKYHAELL---------NYIDLPVLDLHGKQKQ  397

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR-AE  610
             +R      F       LICTDVAARG+DI  V ++I    PD+ ++Y+HR+GR  R + 
Sbjct  398  QKRTNTFFEFCNAKQGTLICTDVAARGLDIPSVDWIIQFDPPDDPRDYIHRVGRTARGSN  457

Query  611  RMGLAISLVATEKEKVWYHVCSSR  634
              G ++  +   +     H+ ++R
Sbjct  458  NKGRSLMFLQPNELGFLSHLKAAR  481


 Score = 107 bits (268),  Expect = 5e-23, Method: Composition-based stats.
 Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 5/94 (5%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F E+ +  +  +A+ EM +   T+IQ   IP  L G DVL AA+TGSGKT AF IPVI+
Sbjct  116  SFEELKLSEKTMKAINEMKFTKMTEIQRRGIPPSLAGRDVLGAAKTGSGKTLAFLIPVIE  175

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
            ++       + G     T     S   +  +  +
Sbjct  176  MLSSLRFKPRNG-----TGVIVVSPTRELALQIF  204


>sp|P44701|SRMB_HAEIN ATP-dependent RNA helicase SrmB OS=Haemophilus 
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) 
OX=71421 GN=srmB PE=3 SV=1
Length=439

 Score = 270 bits (690),  Expect = 1e-81, Method: Composition-based stats.
 Identities = 102/484 (21%), Positives = 180/484 (37%), Gaps = 78/484 (16%)

Query  235  NAELKFNFGEEEFKFPPKDGFVALSKA-PDGYIVKSQHSGNAQ------------VTQTK  281
            + EL     ++ +  P      A+  A  +  ++ S  +G  +            +   +
Sbjct  12   SPELLKALEKKGYSRPTAIQMEAIPAAMEESDVLGSAPTGTGKTAAFLLPALQHLLDYPR  71

Query  282  FLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVD  341
              P  P+ L++ P+RELA Q     ++  ++     L    I GGVA ++   V     D
Sbjct  72   RKPGPPRILVLTPTRELAMQVAEQAEELAQFTH---LNIATITGGVAYQNHGDVFNTNQD  128

Query  342  IVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL  401
            +VV TPGRL   +     +   V  L+ DEAD +L  G+     ++            R 
Sbjct  129  LVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKI------AAETRWRK  182

Query  402  QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK  461
            Q ++ SATL    +   +E++++ P  VD +        ++      +    ++      
Sbjct  183  QTLLFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSNEHKI------  236

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
                                             +   R I+  ++ + I+F R + D   
Sbjct  237  ---------------------------------KLLARFIETEEVTRGIVFIRRREDARE  263

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            L +   ++G              L G+    +R   +++ K G V  L+ TDVAARGIDI
Sbjct  264  LSETLRKRG---------IRSAYLEGEMAQTQRNNAIDKLKSGIVTVLVATDVAARGIDI  314

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW-------YHVCSSR  634
              V +V+N  LP     Y+HRIGR  RA + G A+S V     K+          +  +R
Sbjct  315  DDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKIKRYTEEILKAR  374

Query  635  GKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKR  694
                   R K      +     +  + I+E       + E   KV +   D K    +++
Sbjct  375  ILAGLEPRTKPPKDGEVKSVSKKQKARIKEK-REEKKKTEAKKKVKLRHKDTKNIGKRRK  433

Query  695  AAGG  698
             +  
Sbjct  434  PSNS  437


 Score = 106 bits (265),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 51/103 (50%), Gaps = 5/103 (5%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++ F +  + PE+ +A+E+  +  PT IQ E+IP  +   DVL +A TG+GKT AF +P 
Sbjct  3    LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEESDVLGSAPTGTGKTAAFLLPA  62

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
            +Q + +  +     +K         +   +  M   ++    A
Sbjct  63   LQHLLDYPR-----RKPGPPRILVLTPTRELAMQVAEQAEELA  100


>sp|Q6CEB8|DRS1_YARLI ATP-dependent RNA helicase DRS1 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DRS1 PE=3 
SV=1
Length=753

 Score = 278 bits (711),  Expect = 2e-81, Method: Composition-based stats.
 Identities = 106/513 (21%), Positives = 186/513 (36%), Gaps = 72/513 (14%)

Query  175  HNKQFDNYGEEFTMHDTIGCYL---DIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPAC  231
            H     + G + T  +    Y    + +       K  + L L+  +   +         
Sbjct  217  HKGPAIDEGPQDTAEEMAAFYAPEEENNDKTESVHKTFQTLNLSRPVMKGISALGYQAPT  276

Query  232  VLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALI  291
             +++  +               G V  S     YI+        + ++      A K ++
Sbjct  277  PIQSRTIPIAL----MGKDLVAGAVTGSGKTAAYIIPVLERLLYKSSKVA----ATKVVV  328

Query  292  VEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLD  351
            + P+REL+ Q  +  K+  +Y+    +R  L +GG+  R Q   L+   ++V+ TPGR  
Sbjct  329  LTPTRELSIQVADVGKKLAQYVSG--VRFGLAVGGLNLRVQEQELKTRPEVVIATPGRFI  386

Query  352  DLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATL  410
            D V ++   N+  V  LV+DEAD +L +G+   +  +   +P      K+ Q ++ SAT+
Sbjct  387  DHVRNSPSFNVDDVEILVIDEADRMLEEGFQQELTEILTLLP------KKRQTLLFSATM  440

Query  411  HSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVH  470
            +S     +   +   P  V +         +    V +  +       L     + D   
Sbjct  441  NSSISSLIQLSLSR-PVRVMINPPKQAASGLVQEFVRIRKRDHLKPALLASILKKMD---  496

Query  471  AKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQG  530
                                              K  + IIF   K     L       G
Sbjct  497  ----------------------------------KEQRTIIFVARKETAHRLRIMLGLLG  522

Query  531  GGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINV  590
                          LHG     +R Q++  FKK +V  L+CTD+A+RG+DI  +  V+N 
Sbjct  523  ---------VRIGELHGALSQEQRLQSITAFKKLEVPILVCTDLASRGLDIPKIECVVNY  573

Query  591  TLPDEKQNYVHRIGRVGRAERMGLAISLVAT--EKEKVWYHVCSSRGKGCYNTRLKEDGG  648
             +P     Y+HR+GR  RA R G +I+LV        +      S  +     + K  G 
Sbjct  574  DMPQTHAVYLHRVGRTARAGREGRSITLVGEAAADRAIVREAIKSVSESK---QGKAVGR  630

Query  649  CTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPV  681
               W    +L S+IEE  +     +  + +   
Sbjct  631  NVDWPEVEKLYSKIEEKGDIVNEILAEEKEEKA  663


 Score = 100 bits (250),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 6/108 (6%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F  + +   + + +  + +  PT IQ+ +IP+ L G D++  A TGSGKT A+ IPV+
Sbjct  252  KTFQTLNLSRPVMKGISALGYQAPTPIQSRTIPIALMGKDLVAGAVTGSGKTAAYIIPVL  311

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGL  109
            + +        +  K   T     +   +  +   D G   A    G+
Sbjct  312  ERLLY------KSSKVAATKVVVLTPTRELSIQVADVGKKLAQYVSGV  353


>sp|Q0CNX1|DBP8_ASPTN ATP-dependent RNA helicase dbp8 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dbp8 
PE=3 SV=1
Length=527

 Score = 272 bits (695),  Expect = 2e-81, Method: Composition-based stats.
 Identities = 103/477 (22%), Positives = 171/477 (36%), Gaps = 51/477 (11%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
             + K L +A  +   +   A+     ++ A +         +       +  S+   G  
Sbjct  86   SSFKALNVAPWLIGSLTTMAVRKPTAIQRACIP--------EILKGRDCIGGSRTGSGKT  137

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
            +         + +    P    A+++ P+RELA Q     +QFK       ++ +LI GG
Sbjct  138  IAFAVPI---LQKWAEDPFGIFAVVLTPTRELALQIY---EQFKAISAPQSMKPVLITGG  191

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN----LSQVRFLVLDEADGLLSQGYSD  382
               R Q   L     +V+ TPGRL D + T   +    L +VR +VLDEAD LL+ G   
Sbjct  192  TDMRPQALALSQRPHVVIATPGRLADHIQTSGEDTVRGLKRVRMVVLDEADRLLAPGPGS  251

Query  383  FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH  442
             +  +   +  +    +  Q ++ +AT+   +V+ L                 S    V 
Sbjct  252  MLPDVETCLSALPPSSE-RQTLLFTATVTP-EVRALKS-----------MPRASTKPPVF  298

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
               +             G +    D    K    P      +           + + +  
Sbjct  299  VTEIEAG----------GTTSAGADGAAPKSTLPPTLKQTYLKVPMTHREAFLHVLLSTD  348

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
             +    AIIFC      D               +        LH      ER  NL RF+
Sbjct  349  GNAGKPAIIFCNHTKTADL---------LERLLRRLAHRVTSLHSLLPQSERSSNLARFR  399

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
                R L+ TDVA+RG+DI  V  V+N  +P    +YVHR+GR  RA R G A++LV   
Sbjct  400  ASAARILVATDVASRGLDIPSVALVVNYDVPRNPDDYVHRVGRTARAGRRGEAVTLVGQR  459

Query  623  KEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKV  679
              ++   +    G+       +E            +L E+       + ++E    V
Sbjct  460  DVQLVLAIEERVGRQMEEWS-EEGVSVEGRVVRTGVLKEVGSAKREALIEIEEGRDV  515


 Score = 99.8 bits (247),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 37/157 (24%), Positives = 61/157 (39%), Gaps = 20/157 (13%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            ++F  + V P +  ++  M    PT IQ   IP IL G D +  + TGSGKT AF++P++
Sbjct  86   SSFKALNVAPWLIGSLTTMAVRKPTAIQRACIPEILKGRDCIGGSRTGSGKTIAFAVPIL  145

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI----------GSDGLCC  111
            Q   E                   +   +  +  Y++  A +           G   +  
Sbjct  146  QKWAE---------DPFGIFAVVLTPTRELALQIYEQFKAISAPQSMKPVLITGGTDMRP  196

Query  112  QSREVKEW-HGCRATKGLMKGKHYYEVSCHDQGLCRV  147
            Q+  + +  H   AT G +            +GL RV
Sbjct  197  QALALSQRPHVVIATPGRLADHIQTSGEDTVRGLKRV  233


>sp|Q03532|HAS1_YEAST ATP-dependent RNA helicase HAS1 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=HAS1 
PE=1 SV=1
Length=505

 Score = 271 bits (693),  Expect = 2e-81, Method: Composition-based stats.
 Identities = 90/510 (18%), Positives = 184/510 (36%), Gaps = 74/510 (15%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             ++L L+      ++         ++   +                 +  +K   G  + 
Sbjct  44   FEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLA--------GRDVLGAAKTGSGKTLA  95

Query  269  SQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
                    +   KF P N    +++ P+RELA Q     ++  ++         ++IGG 
Sbjct  96   FLIPAIELLHSLKFKPRNGTGIIVITPTRELALQIFGVARELMEFHSQT---FGIVIGGA  152

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
              R +   L  GV++++ TPGRL D + +T       ++ L++DEAD +L  G+ D + +
Sbjct  153  NRRQEAEKLMKGVNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQ  212

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH-FPTWVDLKGE--DSVPDTVHH  443
            +   +P      +  Q ++ SAT  +  V+ L+   +   P ++++  E  +S  D +  
Sbjct  213  IIKILP-----NEDRQSMLFSAT-QTTKVEDLARISLRPGPLFINVVPETDNSTADGLEQ  266

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
              V  +                                           +       +K 
Sbjct  267  GYVVCDSDK----------------------------------------RFLLLFSFLKR  286

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
            ++  + I+F  +        +                  + LHG +K  +R      F  
Sbjct  287  NQKKKIIVFLSSCNSVKYYAELL---------NYIDLPVLELHGKQKQQKRTNTFFEFCN  337

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER-MGLAISLVATE  622
             +   LICTDVAARG+DI  V ++I    PD+ ++Y+HR+GR  R  +  G ++  +   
Sbjct  338  AERGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPN  397

Query  623  KEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVD  682
            +     ++ +S+          E+    +  ++++ L +   +L+ T             
Sbjct  398  ELGFLRYLKASK-VPLNEYEFPENKIANV-QSQLEKLIKSNYYLHQTAKDGYRSYLQAYA  455

Query  683  EFDGKVTYGQKRAAGGGSYKGHVDILAPTV  712
                K  Y   +       K +   + P V
Sbjct  456  SHSLKTVYQIDKLDLAKVAKSYGFPVPPKV  485


 Score = 105 bits (263),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 5/96 (5%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E+ +     +A+E+M +   T +QA +IP +L G DVL AA+TGSGKT AF IP 
Sbjct  41   VEKFEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPA  100

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
            I++++      + G     T     +   +  +  +
Sbjct  101  IELLHSLKFKPRNG-----TGIIVITPTRELALQIF  131


>sp|Q2HGF7|DBP5_CHAGB ATP-dependent RNA helicase DBP5 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=DBP5 PE=3 SV=1
Length=479

 Score = 270 bits (691),  Expect = 2e-81, Method: Composition-based stats.
 Identities = 104/425 (24%), Positives = 170/425 (40%), Gaps = 78/425 (18%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             ++LGLA  I   +          ++   L                 +A S++  G    
Sbjct  74   FEELGLAKSINDGLLAMNFKKPSKIQEKALPLMLSNPP------RNMIAQSQSGTGKTAA  127

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
               +  ++V  TK  P  P+AL++ PSRELA Q  + I+   ++ +N  L     I G  
Sbjct  128  FVLTVLSRVDLTK--PTQPQALLLAPSRELARQIQSVIQTIGQFCEN--LNVEAAIPGSI  183

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLS-QGYSDFINRM  387
            +R+         ++VVGTPG + DL+   + ++SQ++ +V+DEAD +L  QG  D   R+
Sbjct  184  SRETGVR----ANVVVGTPGTVMDLIRRRQFDVSQLKIMVIDEADNMLDQQGMGDQCVRV  239

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
               +P      K +Q ++ SAT     V   + K       + L+  D     +  + + 
Sbjct  240  KGMLP------KDIQTLLFSATFP-EKVMIFARKYATNAHEIKLRHTDLTVKGISQMYMD  292

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
               +                                  S+   IL   Y +  I      
Sbjct  293  CPDE----------------------------------SKKYDILCKLYGLMTI-----G  313

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
             ++IF RT+     +++     G              LHG  +   R   L+ F+ G  +
Sbjct  314  SSVIFVRTRESASEIQRRMEADG---------HKVSALHGAHEGQNRDALLDDFRSGRSK  364

Query  568  FLICTDVAARGIDIHGVPYVINVTLP--------DEKQNYVHRIGRVGRAERMGLAISLV  619
             LI T+V ARGID+  V  VIN  +P         + + Y+HRIGR GR  R+G++IS V
Sbjct  365  VLITTNVLARGIDVSSVSMVINYDIPMKGPGDKEPDMETYLHRIGRTGRFGRVGVSISFV  424

Query  620  ATEKE  624
               K 
Sbjct  425  YDRKS  429


 Score = 82.9 bits (203),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 26/133 (20%), Positives = 54/133 (41%), Gaps = 13/133 (10%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            +A+F E+G+   I   +  M++  P+ IQ +++PL+L     +++  +++G+GKT AF +
Sbjct  71   VASFEELGLAKSINDGLLAMNFKKPSKIQEKALPLMLSNPPRNMIAQSQSGTGKTAAFVL  130

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQS---RE  115
             V+  V  T        K         +   +                + L  ++     
Sbjct  131  TVLSRVDLT--------KPTQPQALLLAPSRELARQIQSVIQTIGQFCENLNVEAAIPGS  182

Query  116  VKEWHGCRATKGL  128
            +    G RA   +
Sbjct  183  ISRETGVRANVVV  195


>sp|A6RUH2|DRS1_BOTFB ATP-dependent RNA helicase drs1 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=drs1 PE=3 SV=1
Length=801

 Score = 279 bits (713),  Expect = 2e-81, Method: Composition-based stats.
 Identities = 101/450 (22%), Positives = 170/450 (38%), Gaps = 72/450 (16%)

Query  226  ALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKA------------PDGYIVKSQHSG  273
              F +  L    L+       F  P       +  A              G         
Sbjct  268  TTFQSMSLSRPILR-GLATVGFTQPTPIQSKTIPVALLGKDVVGGAVTGSGKTAAFVVPV  326

Query  274  NAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQL  333
              ++          +  I+ P+RELA Q      +   + D   ++  L +GG++ + Q 
Sbjct  327  LERLLYRPKKVPTSRVAILMPTRELAIQCHAVATKLASHTD---IKFCLAVGGLSLKVQE  383

Query  334  SVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP  392
            + L    D+++ TPGR +D + ++    +  +  LVLDEAD +L  G++D +N +   IP
Sbjct  384  AELRLRPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEAGFADELNEILTTIP  443

Query  393  QVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKT  452
                  K  Q ++ SAT+ S  V  L    ++ P  + +  + S   T+    + + P  
Sbjct  444  ------KSRQTMLFSATM-SSSVDNLIRVGLNRPVRLLVDSQKSTAGTLVQEFIRLRPGR  496

Query  453  DRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF  512
            +                                       +  Y +        D+ I+F
Sbjct  497  EG-------------------------------------KRMGYLLYLCANVYTDRVIVF  519

Query  513  CRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICT  572
             R K +       F   G              LHG     +R +++E F+ G   FL+ T
Sbjct  520  FRQKKEAHRARIIFGLSG---------LKATELHGSMSQEQRIKSVEAFRDGKASFLLAT  570

Query  573  DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY-HVC  631
            D+A+RG+DI GV  VIN   P     Y+HR+GR  RA R G A ++ A    KV    V 
Sbjct  571  DLASRGLDIKGVDTVINYEAPQSHDIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVK  630

Query  632  SSRGKGCY-NTRLKEDGGCTIWYNEMQLLS  660
            +SR +G    +R+ E      W  ++  ++
Sbjct  631  ASRTQGAKVVSRVIEASEADSWSEKVDEMA  660


 Score = 108 bits (269),  Expect = 7e-23, Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 6/106 (6%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F  M +   I + +  + +  PT IQ+++IP+ L G DV+  A TGSGKT AF +PV+
Sbjct  268  TTFQSMSLSRPILRGLATVGFTQPTPIQSKTIPVALLGKDVVGGAVTGSGKTAAFVVPVL  327

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            + +    K      K  T+         +  +  +   +  A  +D
Sbjct  328  ERLLYRPK------KVPTSRVAILMPTRELAIQCHAVATKLASHTD  367


>sp|A1CW14|HAS1_NEOFI ATP-dependent RNA helicase has1 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=has1 
PE=3 SV=1
Length=622

 Score = 274 bits (701),  Expect = 2e-81, Method: Composition-based stats.
 Identities = 85/429 (20%), Positives = 158/429 (37%), Gaps = 72/429 (17%)

Query  212  LGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQH  271
            LGL  +    + +        ++   +                 +  +K   G  +    
Sbjct  145  LGLTEKTLKAINDMGFDTMTEIQRRTIPPLLA--------GRDVLGAAKTGSGKTLSFLI  196

Query  272  SGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
                 ++  +F P N    ++V P+RELA Q     ++  +Y         ++IGG   R
Sbjct  197  PAVEMLSALRFKPRNGTGVIVVSPTRELALQIFGVARELCQYHSQTY---GIVIGGANRR  253

Query  331  DQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHN  389
             +   L  GV++++ TPGRL D + +T       ++ LV+DEAD +L  G+ D + ++  
Sbjct  254  AEAEKLMKGVNLLIATPGRLLDHLQNTQGFIFKNLKTLVIDEADRILEVGFEDEMRQIVK  313

Query  390  QIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH-FPTWVDLK--GEDSVPDTVHHVVV  446
             +P      +  Q ++ SAT  +  V+ L+   +   P ++++    E S  + +    V
Sbjct  314  ILP-----SEERQTMLFSAT-QTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYV  367

Query  447  PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM  506
                                                          +       +K +  
Sbjct  368  ICEADK----------------------------------------RFLLLFSFLKRNLK  387

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
             + I+F  +        +                  + LHG +K  +R      F     
Sbjct  388  KKIIVFFSSCNCVKYHAELL---------NYIDLPVLELHGKQKQQKRTNTFFEFCNAKQ  438

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR-AERMGLAISLVATEKEK  625
              LICTDVAARG+DI  V ++I    PD+ ++Y+HR+GR  R A   G ++  +   +  
Sbjct  439  GTLICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGANAKGRSLMFLQPSEVG  498

Query  626  VWYHVCSSR  634
               H+  +R
Sbjct  499  FLKHLKEAR  507


 Score = 104 bits (259),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 50/93 (54%), Gaps = 5/93 (5%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+E+G+  +  +A+ +M +   T+IQ  +IP +L G DVL AA+TGSGKT +F IP +++
Sbjct  142  FTELGLTEKTLKAINDMGFDTMTEIQRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVEM  201

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
            +       + G     T     S   +  +  +
Sbjct  202  LSALRFKPRNG-----TGVIVVSPTRELALQIF  229


>sp|P54475|CSHB_BACSU DEAD-box ATP-dependent RNA helicase CshB 
OS=Bacillus subtilis (strain 168) OX=224308 GN=cshB PE=1 SV=1
Length=438

 Score = 269 bits (687),  Expect = 2e-81, Method: Composition-based stats.
 Identities = 104/466 (22%), Positives = 179/466 (38%), Gaps = 69/466 (15%)

Query  242  FGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN------AQVTQTKFLPNAPKALIVEPS  295
             G  E     K    A+ K           +G         + +     +  + +I  P+
Sbjct  22   LGFYEPTDIQKRLIPAVLKKESVIGQSQTGTGKTHAYLLPLLNKIDPAKDVVQVVITAPT  81

Query  296  RELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVS  355
            RELA Q      +  +  +  ++R    IGG   +  +  L+    +VVGTPGR+ DL+ 
Sbjct  82   RELANQIYQEALKITQGEEGSQIRSKCFIGGTDKQKSIDKLKIQPHLVVGTPGRIADLIK  141

Query  356  TGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDV  415
               L++ +   LV+DEAD +L  G+   ++ + +++P      + LQ++V SAT+    +
Sbjct  142  EQALSVHKAESLVIDEADLMLDMGFLADVDYIGSRMP------EDLQMLVFSATIP-EKL  194

Query  416  KKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNT  475
            K   +K M  P +  ++ +      + H+++P   +                        
Sbjct  195  KPFLKKYMENPKYAHVEPKQVTAAKIEHILIPSKHRD-----------------------  231

Query  476  RPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDK  535
                             K +     +        I+F  TK   D++ QY   +G     
Sbjct  232  -----------------KDKLLFDIMSHLNPYLGIVFANTKNTADHIAQYLTGKG-----  269

Query  536  KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDE  595
                     LHG   P ERK+ +++    +  ++I TD+AARGIDI GV +VIN  LPD+
Sbjct  270  ----MKIGLLHGGLTPRERKKVMKQINDLEFTYIIATDLAARGIDIKGVSHVINYELPDD  325

Query  596  KQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT-------RLKEDGG  648
               YVHR+GR  RA   G A+++     E     +     +  Y         +  +   
Sbjct  326  LDFYVHRVGRTARAGSSGQAMTIYELTDEDALVRLEKMGIEFEYLELEKGEWKKGDDRQR  385

Query  649  CTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKR  694
                        EI   L     +V+P  K  +     K+   Q+R
Sbjct  386  RKKRKKTPNEADEIAHRLVKKPKKVKPGYKKKMSYEMEKIKKKQRR  431


 Score = 86.3 bits (212),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 65/377 (17%), Positives = 123/377 (33%), Gaps = 72/377 (19%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F    + P I  AV  + +  PTDIQ   IP +L    V+  ++TG+GKT A+ +P++
Sbjct  4    TKFELYELKPFIIDAVHRLGFYEPTDIQKRLIPAVLKKESVIGQSQTGTGKTHAYLLPLL  63

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHG  121
              +       Q             +   +     Y        G +G   Q R      G
Sbjct  64   NKIDPAKDVVQV---------VITAPTRELANQIYQEALKITQGEEG--SQIRSKCFIGG  112

Query  122  CRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDN  181
                K + K K    +     G  R+     + +L +              K+ +   D 
Sbjct  113  TDKQKSIDKLKIQPHLVVGTPG--RIADLIKEQALSV-------------HKAESLVIDE  157

Query  182  YGEEFTMH-----DTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNA  236
                  M      D IG  +  D   + FS           IP  +K             
Sbjct  158  ADLMLDMGFLADVDYIGSRMPEDLQMLVFS---------ATIPEKLK------------P  196

Query  237  ELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPK-ALIVEPS  295
             LK      ++         A     +  ++ S+H    ++         P   ++   +
Sbjct  197  FLKKYMENPKYAHVEPKQVTAA--KIEHILIPSKHRDKDKLLFDIMSHLNPYLGIVFANT  254

Query  296  RELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDI----VVGTPGRLD  351
            +       N      +Y+    ++  L+ GG+  R++  V++   D+    ++ T     
Sbjct  255  K-------NTADHIAQYLTGKGMKIGLLHGGLTPRERKKVMKQINDLEFTYIIAT-----  302

Query  352  DLVSTGKLNLSQVRFLV  368
            DL + G +++  V  ++
Sbjct  303  DLAARG-IDIKGVSHVI  318


>sp|Q5AK59|HAS1_CANAL ATP-dependent RNA helicase HAS1 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=HAS1 
PE=3 SV=1
Length=565

 Score = 273 bits (697),  Expect = 3e-81, Method: Composition-based stats.
 Identities = 81/430 (19%), Positives = 157/430 (37%), Gaps = 73/430 (17%)

Query  212  LGLAFEIP--PHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKS  269
                F  P    +K         ++   +                 +  +K   G  +  
Sbjct  111  ENADFSEPTMKAIKEMGFTKMTKVQAKTIPPLLA--------GRDVLGAAKTGSGKTLAF  162

Query  270  QHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
                   +   K  P N    +I+ P+RELA Q     ++  ++         ++IGG  
Sbjct  163  LIPAIELLYSLKIKPRNGTAVIIITPTRELALQIFGVARELMQFHSQT---CGIVIGGAD  219

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
             R + + L  GV+++V TPGRL D +   +   S ++ LV+DEAD +L  G+ D + ++ 
Sbjct  220  RRQEATKLAKGVNLLVATPGRLLDHLKNTQFVFSNLKALVIDEADRILEIGFEDEMKQII  279

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH-FPTWVDLKGED--SVPDTVHHVV  445
              +P      +  Q ++ SAT  +  V+ L+   +   P ++++  E   S  D +    
Sbjct  280  KVLP-----NENRQSMLFSAT-QTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGY  333

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
            V  +                                           +       +K + 
Sbjct  334  VVCDSDK----------------------------------------RFLLLFSFLKRNV  353

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
              + I+F  +        +                  + LHG +K  +R      F    
Sbjct  354  KKKIIVFLSSCNSVKFYSELL---------NYIDLPVLDLHGKQKQQKRTNTFFEFCNAK  404

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER-MGLAISLVATEKE  624
               L+CTDVAARG+DI  V +++    PD+ ++Y+HR+GR  R  +  G ++  +   + 
Sbjct  405  QGILVCTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSEL  464

Query  625  KVWYHVCSSR  634
                ++ +++
Sbjct  465  GFLRYLKAAK  474


 Score = 103 bits (256),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 47/93 (51%), Gaps = 5/93 (5%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F          +A++EM +   T +QA++IP +L G DVL AA+TGSGKT AF IP I++
Sbjct  110  FENADFSEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEL  169

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
            +Y      + G     T     +   +  +  +
Sbjct  170  LYSLKIKPRNG-----TAVIIITPTRELALQIF  197


>sp|Q65RG7|RHLB_MANSM ATP-dependent RNA helicase RhlB OS=Mannheimia 
succiniciproducens (strain MBEL55E) OX=221988 GN=rhlB 
PE=3 SV=1
Length=417

 Score = 268 bits (685),  Expect = 3e-81, Method: Composition-based stats.
 Identities = 104/439 (24%), Positives = 175/439 (40%), Gaps = 65/439 (15%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
              DL L  ++   +++        ++   L  +                 ++   G  + 
Sbjct  11   FADLPLNAKVLEALESNGFEYCTPIQALSLPISLA--------GKDVAGQAQTGTGKTMA  62

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
               +    + +     N P+ALI+ P+RELA Q  ++ ++  K      L+  L  GG  
Sbjct  63   FLTATFHHLLEHPVKTNHPRALIMAPTRELAVQIAHDAERMVK---TTGLKTALAYGGDG  119

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
               QL  +E G DI++GT GR+ D V    + LS ++ +VLDEAD +   G+   I  + 
Sbjct  120  YDKQLKAIEAGADIIIGTTGRIIDYVKQNIIALSHIQVVVLDEADRMFDLGFIKDIRYLM  179

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
             + P      K+   ++ SATL S+ V++L+ + M+ P +V+++        +       
Sbjct  180  RKCP----SPKQRLTLLFSATL-SYKVRELAFEDMNDPEYVEVEPLQKTGHRIK------  228

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
                                              E         K    +  ++E   ++
Sbjct  229  ----------------------------------EELFYPSNEDKMPLLITLLEEEWPER  254

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
             IIF  TK  C+ +  Y    G              L GD    +R   L++F  G +  
Sbjct  255  CIIFANTKHQCEKIWGYLAADG---------HRVGLLTGDVAQKKRLSLLKQFTDGALDI  305

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            L+ TDVAARG+ I  V +V N  LPD++++YVHRIGR GRA   G++IS    E      
Sbjct  306  LVATDVAARGLHIPDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLP  365

Query  629  HVCSSRGKGCYNTRLKEDG  647
             +    G     ++   D 
Sbjct  366  AIEEYIGHHIAVSQYDSDS  384


 Score = 91.7 bits (226),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 6/92 (7%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F+++ +  ++ +A+E   +   T IQA S+P+ L G DV   A+TG+GKT AF       
Sbjct  11  FADLPLNAKVLEALESNGFEYCTPIQALSLPISLAGKDVAGQAQTGTGKTMAFLTATFHH  70

Query  64  VYETLKDQQEGKKGKTTIKTGASVLNKWQMNP  95
           + E         K         +   +  +  
Sbjct  71  LLEHP------VKTNHPRALIMAPTRELAVQI  96


>sp|Q99MJ9|DDX50_MOUSE ATP-dependent RNA helicase DDX50 OS=Mus 
musculus OX=10090 GN=Ddx50 PE=2 SV=1
Length=734

 Score = 277 bits (708),  Expect = 3e-81, Method: Composition-based stats.
 Identities = 116/518 (22%), Positives = 205/518 (40%), Gaps = 69/518 (13%)

Query  232  VLKNAELKFNFGEEEFKFPP---KDGFVALSKAPDGYIVKSQHSGNAQVTQTKF---LPN  285
            +LK   + + F  +   F P       +A ++   G           ++ + +       
Sbjct  148  LLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSR  207

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            +PK L++ P+RELA Q   + K   +     KL      GG + + Q++ + NG+DI+VG
Sbjct  208  SPKVLVLAPTRELANQVAKDFKDITR-----KLSVACFYGGTSYQSQINQIRNGIDILVG  262

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGR+ D + +G+L+LS++R +VLDE D +L  G+++ +  + ++    T      Q ++
Sbjct  263  TPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHE-SYKTDSEDNPQTLL  321

Query  406  CSATLHSFDVKKLSEKIMH-FPTWVDLKGE--DSVPDTVHHVVVPVNPKTDRLWERLGKS  462
             SAT   + V K+++K M      VDL G+       TV H+ +  +             
Sbjct  322  FSATCPQW-VYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCH-------------  367

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
                                  WS+   ++     V +  E    +AIIFC TK +   +
Sbjct  368  ----------------------WSQRPAVIGDVLQVYSGSE---GRAIIFCETKKNVTEM  402

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
                            + +  CLHGD    +R+  L+ F++G  + L+ T+VAARG+DI 
Sbjct  403  A----------MNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIP  452

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTR  642
             V  VI  + P + ++Y+HR GR GRA R G+ +      +     +V    G       
Sbjct  453  EVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPRERGQLRYVEQKAGITFKRVG  512

Query  643  LKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYK  702
            +            M  +  +       +    P  +  ++E           A   G+  
Sbjct  513  VPSTMDLVK-SKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGASS  571

Query  703  GHVDILAPTVQELA----ALEKEAQTSFLHLGYLPNQL  736
                 L  + +          +E Q        L  +L
Sbjct  572  FEPRSLITSDKGFVTMTLESPEEIQDVSCAWKELNRKL  609


 Score = 71.7 bits (174),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 43/90 (48%), Gaps = 3/90 (3%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            AFS   +  E  + ++         IQ ++   +  G D++  A TG+GKT +F+IP+I+
Sbjct  135  AFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE  194

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQ  92
             +    ++Q+  KK ++      +   +  
Sbjct  195  RLQ---RNQETIKKSRSPKVLVLAPTRELA  221


>sp|P0CR06|DBP10_CRYNJ ATP-dependent RNA helicase DBP10 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=DBP10 PE=3 SV=1
Length=802

 Score = 278 bits (712),  Expect = 3e-81, Method: Composition-based stats.
 Identities = 114/541 (21%), Positives = 193/541 (36%), Gaps = 81/541 (15%)

Query  209  GKD--LGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            G+   L +  ++   +  +       ++ A +                 + +++   G  
Sbjct  27   GQWRALNVGPDLIRSLLIRKFKTPTPIQRAAIPPALSTPP------RDILGMARTGSGKT  80

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPK---------  317
            +        Q T +      P+ALI+ PSRELA Q     K   + ++  K         
Sbjct  81   LAYLIPLL-QRTGSTHHGQGPRALILCPSRELAVQIYTVGKDLARGMNKGKGKGKNKNED  139

Query  318  -----------LRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRF  366
                       LR  LIIGG     Q   + +  DIV+ TPGR   L+    ++L  ++ 
Sbjct  140  EEDEEGKGKEGLRWALIIGGEGMDAQFEKMSSNPDIVIATPGRFLHLIVEMHMDLRHLQT  199

Query  367  LVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFP  426
            ++ DEAD L   G+   +  + +++P         Q ++ SATL S  V + ++  +  P
Sbjct  200  VIYDEADRLFEMGFDVQLQEILHRLPST------RQNLLFSATLPS-SVAEFAKAGLVNP  252

Query  427  TWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWS  486
              V L  E  +   +      V P      E+     +   +V  K N    A+      
Sbjct  253  LLVRLDAEQKISPDLALKFFSVKP-----GEKEASLLVLLREVIGKPNQPEPADPS----  303

Query  487  EAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLH  546
                                 QAI+F  TK   D + +     G         +    ++
Sbjct  304  ------------------SAPQAIVFVATKHHVDYVAELLRTTG---------YRTSLIY  336

Query  547  GDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRV  606
                   R+Q L  F+      L+ TDVAARG+DI  + +VIN   P   + +VHR+GR 
Sbjct  337  SSLDQVARQQQLAGFRSHQSDVLVVTDVAARGLDIPIMDHVINYDFPAGPRIFVHRVGRT  396

Query  607  GRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHL  666
             RA R G A SL+  E       + +  G      R+ E     +    ++ LSE  E++
Sbjct  397  ARAGRKGTAYSLIVKEDFPYLCDLHTFLGT----ERMGEPADV-LRSLPIEQLSENVEYV  451

Query  667  NCTISQVEPDIKVPVDEFDGKVT-YGQKRAAGGGSYKGHVDILAPTVQELAALEKEAQTS  725
               + +  P I    +        + + R     +       LA     L+         
Sbjct  452  FHNLDETAPHITALRNVMRKGQGMFERSRTKANPTSYRQAKSLAS---ALSNNPPRIDDM  508

Query  726  F  726
            F
Sbjct  509  F  509


 Score = 86.7 bits (213),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 28/105 (27%), Positives = 44/105 (42%), Gaps = 9/105 (9%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSIPVI  61
            +  + V P++ +++    +  PT IQ  +IP  L     D+L  A TGSGKT A+ IP++
Sbjct  29   WRALNVGPDLIRSLLIRKFKTPTPIQRAAIPPALSTPPRDILGMARTGSGKTLAYLIPLL  88

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            Q    T         G+           +  +  Y  G   A G 
Sbjct  89   QRTGSTHH-------GQGPRALILCPSRELAVQIYTVGKDLARGM  126


>sp|P0CR07|DBP10_CRYNB ATP-dependent RNA helicase DBP10 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=DBP10 PE=3 SV=1
Length=802

 Score = 278 bits (712),  Expect = 3e-81, Method: Composition-based stats.
 Identities = 114/541 (21%), Positives = 193/541 (36%), Gaps = 81/541 (15%)

Query  209  GKD--LGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            G+   L +  ++   +  +       ++ A +                 + +++   G  
Sbjct  27   GQWRALNVGPDLIRSLLIRKFKTPTPIQRAAIPPALSTPP------RDILGMARTGSGKT  80

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPK---------  317
            +        Q T +      P+ALI+ PSRELA Q     K   + ++  K         
Sbjct  81   LAYLIPLL-QRTGSTHHGQGPRALILCPSRELAVQIYTVGKDLARGMNKGKGKGKNKNED  139

Query  318  -----------LRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRF  366
                       LR  LIIGG     Q   + +  DIV+ TPGR   L+    ++L  ++ 
Sbjct  140  EEDEEGKGKEGLRWALIIGGEGMDAQFEKMSSNPDIVIATPGRFLHLIVEMHMDLRHLQT  199

Query  367  LVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFP  426
            ++ DEAD L   G+   +  + +++P         Q ++ SATL S  V + ++  +  P
Sbjct  200  VIYDEADRLFEMGFDVQLQEILHRLPST------RQNLLFSATLPS-SVAEFAKAGLVNP  252

Query  427  TWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWS  486
              V L  E  +   +      V P      E+     +   +V  K N    A+      
Sbjct  253  LLVRLDAEQKISPDLALKFFSVKP-----GEKEASLLVLLREVIGKPNQPEPADPS----  303

Query  487  EAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLH  546
                                 QAI+F  TK   D + +     G         +    ++
Sbjct  304  ------------------SAPQAIVFVATKHHVDYVAELLRTTG---------YRTSLIY  336

Query  547  GDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRV  606
                   R+Q L  F+      L+ TDVAARG+DI  + +VIN   P   + +VHR+GR 
Sbjct  337  SSLDQVARQQQLAGFRSHQSDVLVVTDVAARGLDIPIMDHVINYDFPAGPRIFVHRVGRT  396

Query  607  GRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHL  666
             RA R G A SL+  E       + +  G      R+ E     +    ++ LSE  E++
Sbjct  397  ARAGRKGTAYSLIVKEDFPYLCDLHTFLGT----ERMGEPADV-LRSLPIEQLSENVEYV  451

Query  667  NCTISQVEPDIKVPVDEFDGKVT-YGQKRAAGGGSYKGHVDILAPTVQELAALEKEAQTS  725
               + +  P I    +        + + R     +       LA     L+         
Sbjct  452  FHNLDETAPHITALRNVMRKGQGMFERSRTKANPTSYRQAKSLAS---ALSNNPPRIDDM  508

Query  726  F  726
            F
Sbjct  509  F  509


 Score = 86.7 bits (213),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 28/105 (27%), Positives = 44/105 (42%), Gaps = 9/105 (9%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSIPVI  61
            +  + V P++ +++    +  PT IQ  +IP  L     D+L  A TGSGKT A+ IP++
Sbjct  29   WRALNVGPDLIRSLLIRKFKTPTPIQRAAIPPALSTPPRDILGMARTGSGKTLAYLIPLL  88

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            Q    T         G+           +  +  Y  G   A G 
Sbjct  89   QRTGSTHH-------GQGPRALILCPSRELAVQIYTVGKDLARGM  126


>sp|A5DID7|HAS1_PICGU ATP-dependent RNA helicase HAS1 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=HAS1 PE=3 
SV=2
Length=569

 Score = 273 bits (697),  Expect = 3e-81, Method: Composition-based stats.
 Identities = 87/445 (20%), Positives = 162/445 (36%), Gaps = 73/445 (16%)

Query  195  YLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDG  254
            Y   D+      K  +DLGL+      +K+        ++   +                
Sbjct  94   YAQADESTSGSDK-FEDLGLSEPTMRAIKDMGFEKMTKVQEKTIPPLLA--------GRD  144

Query  255  FVALSKAPDGYIVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYI  313
             +  +K   G  +         +   KF P N    ++V P+RELA Q     +    + 
Sbjct  145  VLGAAKTGSGKTLAFLIPAIEMLYSLKFKPRNGTGVIVVSPTRELALQIFGVARDLMAHH  204

Query  314  DNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEA  372
                    ++IGG   R +   L  GV++++ TPGRL D + +T       ++ LV+DEA
Sbjct  205  SQTL---GIVIGGANRRQEADKLMKGVNLLIATPGRLLDHLQNTKGFIFKNLKALVIDEA  261

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH-FPTWVDL  431
            D +L  G+ D + ++   +P         Q ++ SAT  +  V+ L+   +   P ++++
Sbjct  262  DRILEIGFEDEMKQIIKVLP-----SDERQSMLFSAT-QTTKVEDLARISLRAGPLYINV  315

Query  432  KGED--SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAI  489
              E   S  D +    V  +                                        
Sbjct  316  VPETEVSTADGLEQGYVTCDSD--------------------------------------  337

Query  490  KILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDR  549
              ++       ++ +   + I+F  +        +                  + LHG +
Sbjct  338  --MRFLLLFSFLRRNIKKKIIVFLSSCNCVKYFGELL---------NYIDLPVLDLHGKQ  386

Query  550  KPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA  609
            K  +R      F       LICTDVAARG+DI  V ++I    PD+ ++Y+HR+GR  R 
Sbjct  387  KQQKRTNTFFEFCNAKQGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARG  446

Query  610  -ERMGLAISLVATEKEKVWYHVCSS  633
                G ++  +   +     ++ ++
Sbjct  447  TGGKGKSLMFLTPSELGFLRYLKAA  471


 Score = 110 bits (276),  Expect = 4e-24, Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 50/93 (54%), Gaps = 5/93 (5%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F ++G+     +A+++M +   T +Q ++IP +L G DVL AA+TGSGKT AF IP I++
Sbjct  107  FEDLGLSEPTMRAIKDMGFEKMTKVQEKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEM  166

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
            +Y      + G     T     S   +  +  +
Sbjct  167  LYSLKFKPRNG-----TGVIVVSPTRELALQIF  194


>sp|Q6FIL3|HAS1_CANGA ATP-dependent RNA helicase HAS1 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=HAS1 PE=3 SV=1
Length=494

 Score = 270 bits (690),  Expect = 5e-81, Method: Composition-based stats.
 Identities = 86/424 (20%), Positives = 158/424 (37%), Gaps = 75/424 (18%)

Query  228  FPACVLKNAELKF--NFGEEEFKFPPKDGFVAL---------SKAPDGYIVKSQHSGNAQ  276
            F +  L    ++     G  +           L         +K   G  +         
Sbjct  31   FKSLNLSQPTMRAIEKMGFSKMTPVQARTIPPLMAGRDVLGAAKTGSGKTLAFLLPTIEL  90

Query  277  VTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
            +   KF P N    +I+ P+RELA Q    +++  ++         ++IGG   R +   
Sbjct  91   LHSLKFKPRNGTGVIIITPTRELALQIFGVVRELMEFHSQT---FGIVIGGANRRQEAEK  147

Query  336  LENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV  394
            L  GV+++V TPGRL D + +T       ++ LV+DEAD +L  G+ D + ++   +P  
Sbjct  148  LMKGVNLLVATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILP--  205

Query  395  TSDGKRLQVIVCSATLHSFDVKKLSEKIMH-FPTWVDLKGE--DSVPDTVHHVVVPVNPK  451
                +  Q ++ SAT  +  V+ LS   +   P ++++  E   S  D +    V     
Sbjct  206  ---NEDRQSMLFSAT-QTTKVEDLSRISLRPGPLFINVVSEHDSSTADGLEQGYVVCESD  261

Query  452  TDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAII  511
                                                     +       +K ++  + I+
Sbjct  262  K----------------------------------------RFLLLFSFLKRNQKKKIIV  281

Query  512  FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLIC  571
            F  +        +                  + LHG +K  +R      F   +   LIC
Sbjct  282  FLSSCNSVKYYAELL---------NYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILIC  332

Query  572  TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER-MGLAISLVATEKEKVWYHV  630
            TDVAARG+DI  V ++I    PD+ ++Y+HR+GR  R     G ++  +   +     ++
Sbjct  333  TDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTNGKGKSLMFLIPNELGFLRYL  392

Query  631  CSSR  634
             +++
Sbjct  393  KAAK  396


 Score = 108 bits (269),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 27/94 (29%), Positives = 49/94 (52%), Gaps = 5/94 (5%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F  + +     +A+E+M +   T +QA +IP ++ G DVL AA+TGSGKT AF +P I+
Sbjct  30   SFKSLNLSQPTMRAIEKMGFSKMTPVQARTIPPLMAGRDVLGAAKTGSGKTLAFLLPTIE  89

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
            +++      + G     T     +   +  +  +
Sbjct  90   LLHSLKFKPRNG-----TGVIIITPTRELALQIF  118


>sp|Q8SQK9|DHH1_ENCCU ATP-dependent RNA helicase DHH1 OS=Encephalitozoon 
cuniculi (strain GB-M1) OX=284813 GN=DHH1 PE=3 SV=2
Length=487

 Score = 270 bits (689),  Expect = 6e-81, Method: Composition-based stats.
 Identities = 94/427 (22%), Positives = 165/427 (39%), Gaps = 71/427 (17%)

Query  210  KDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKS  269
            + LGL   +   +++        ++ A +    G            +  SK   G     
Sbjct  109  ESLGLGPVLLKRIRDIGYDFPSPVQVASIPHVLG--------GKNLLVRSKNGTGKTASY  160

Query  270  QHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAA  329
                   +  ++    + + +I+ P RELA Q   N+K+     +   +    ++GG + 
Sbjct  161  IVPMLNMINSSEL---SIQGIILVPIRELALQISRNVKRMS---EGTGVISAPVVGGTSM  214

Query  330  RDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHN  389
            +D +  + NGV ++VGTPGR+ DLV      LS+   LV DEAD LL   + + + ++ +
Sbjct  215  QDDIIRVSNGVHVMVGTPGRIVDLVEKRVGTLSKRVILVFDEADKLLDVTFGETVTKLLD  274

Query  390  QIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN  449
             +P      +  Q+++ SAT   + V     + M  P  ++L  ++  P  V      V 
Sbjct  275  LLP------REKQMLLYSATFP-YFVTGFIRRYMKNPLCINLM-KELAPVGVKQFYTYVK  326

Query  450  PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA  509
            P                                                  +    ++Q 
Sbjct  327  PSEK----------------------------------------LLCLKSLLLRLSINQC  346

Query  510  IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL  569
            +IFC +    + L     + G              +H      +R      F KG  + L
Sbjct  347  VIFCNSIKTVELLAMKITEMG---------LPSYFIHSKMAQEDRNIVFHNFLKGKCKIL  397

Query  570  ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            + TD+  RG+D     YVIN  +    ++Y+HRIGR GR    G+AISLV TE++++   
Sbjct  398  VATDLITRGVDAPNTNYVINFDISKSPESYLHRIGRAGRFGAPGVAISLVTTEEKEMLMD  457

Query  630  VCSSRGK  636
            + +  GK
Sbjct  458  IEAKLGK  464


 Score = 86.3 bits (212),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 20/127 (16%), Positives = 55/127 (43%), Gaps = 11/127 (9%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            +  +G+ P + + + ++ +  P+ +Q  SIP +LGG ++L+ ++ G+GKT ++ +P++ +
Sbjct  108  WESLGLGPVLLKRIRDIGYDFPSPVQVASIPHVLGGKNLLVRSKNGTGKTASYIVPMLNM  167

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQ--SREVKEWHG  121
            +  +    Q               + +  +         + G+  +          +   
Sbjct  168  INSSELSIQ---------GIILVPIRELALQISRNVKRMSEGTGVISAPVVGGTSMQDDI  218

Query  122  CRATKGL  128
             R + G+
Sbjct  219  IRVSNGV  225


>sp|Q9BQ39|DDX50_HUMAN ATP-dependent RNA helicase DDX50 OS=Homo 
sapiens OX=9606 GN=DDX50 PE=1 SV=1
Length=737

 Score = 276 bits (706),  Expect = 6e-81, Method: Composition-based stats.
 Identities = 125/546 (23%), Positives = 215/546 (39%), Gaps = 82/546 (15%)

Query  155  SLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGL  214
              +  +D+F        K   N   D Y ++            +D    K S N     L
Sbjct  77   GFNRLSDEFSKSHKSRRKDLPNGDIDEYEKKSKR------VSSLDTSTHKSSDN----KL  126

Query  215  AFEIPPHMKNQAL--FPAC-----VLKNAELKFNFGEEEFKFPP---KDGFVALSKAPDG  264
               +    K  A   FP       +LK   + + F  +   F P       +A ++   G
Sbjct  127  EETLTREQKEGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTG  186

Query  265  YIVKSQHSGNAQVTQTKF---LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLREL  321
                       ++ + +       +PK L++ P+RELA Q   + K   +     KL   
Sbjct  187  KTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITR-----KLSVA  241

Query  322  LIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYS  381
               GG + + Q++ + NG+DI+VGTPGR+ D + +G+L+LS++R +VLDE D +L  G++
Sbjct  242  CFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFA  301

Query  382  DFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH-FPTWVDLKGE--DSVP  438
            + +  + ++    T      Q ++ SAT   + V K+++K M      VDL G+      
Sbjct  302  EQVEDIIHE-SYKTDSEDNPQTLLFSATCPQW-VYKVAKKYMKSRYEQVDLVGKMTQKAA  359

Query  439  DTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAV  498
             TV H+ +  +                                   WS+   ++     V
Sbjct  360  TTVEHLAIQCH-----------------------------------WSQRPAVIGDVLQV  384

Query  499  RAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNL  558
             +  E    +AIIFC TK +   +                + +  CLHGD    +R+  L
Sbjct  385  YSGSE---GRAIIFCETKKNVTEMA----------MNPHIKQNAQCLHGDIAQSQREITL  431

Query  559  ERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            + F++G  + L+ T+VAARG+DI  V  VI  + P + ++Y+HR GR GRA R G+ I  
Sbjct  432  KGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICF  491

Query  619  VATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIK  678
                +     +V    G       +            M  +  +       +    P  +
Sbjct  492  YQPRERGQLRYVEQKAGITFKRVGVPSTMDLVK-SKSMDAIRSLASVSYAAVDFFRPSAQ  550

Query  679  VPVDEF  684
              ++E 
Sbjct  551  RLIEEK  556


 Score = 72.5 bits (176),  Expect = 8e-12, Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 43/90 (48%), Gaps = 3/90 (3%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            AFS   +  E  + ++         IQ ++   +  G D++  A TG+GKT +F+IP+I+
Sbjct  138  AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE  197

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQ  92
             +    ++Q+  KK ++      +   +  
Sbjct  198  RLQ---RNQETIKKSRSPKVLVLAPTRELA  224


>sp|O49289|RH29_ARATH Putative DEAD-box ATP-dependent RNA helicase 
29 OS=Arabidopsis thaliana OX=3702 GN=RH29 PE=3 SV=1
Length=845

 Score = 278 bits (712),  Expect = 6e-81, Method: Composition-based stats.
 Identities = 118/521 (23%), Positives = 198/521 (38%), Gaps = 92/521 (18%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             + L L   +   +K +       ++   +       +         VA+++   G    
Sbjct  30   FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVD--------VVAMARTGSGKTAA  81

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
                   ++ Q        +ALI+ P+R+LAEQTL   K+  K+ D   LR  L++GG +
Sbjct  82   FLIPMLEKLKQHVP-QGGVRALILSPTRDLAEQTLKFTKELGKFTD---LRVSLLVGGDS  137

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVST-GKLNLSQVRFLVLDEADGLLSQGYSDFINRM  387
              DQ   L  G D+++ TPGRL  L+S    + L  V ++V DEAD L   G+++ ++++
Sbjct  138  MEDQFEELTKGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQI  197

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
              Q+       +  Q ++ SATL S  + + ++  +  P  V L  E+ +   +    + 
Sbjct  198  LTQL------SENRQTLLFSATLPSA-LAEFAKAGLREPQLVRLDVENKISPDLKLSFLT  250

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH--K  505
            V P+                                         K    +  ++EH   
Sbjct  251  VRPEE----------------------------------------KYSALLYLVREHISS  270

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
              Q +IF  TK   + +   F  +   P            +GD     RK ++ RF+   
Sbjct  271  DQQTLIFVSTKHHVEFVNSLFKLENIEPSVC---------YGDMDQDARKIHVSRFRARK  321

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
               LI TD+AARGIDI  +  VIN   P   + +VHR+GR  RA R G A S V  E   
Sbjct  322  TMLLIVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAYSFVTPEDMP  381

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFD  685
                +     K                  E ++L  +EE +  T   ++           
Sbjct  382  YMLDLHLFLSKPVRPA-----------PTEDEVLKNMEEVMTKTSQAID----------S  420

Query  686  GKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKEAQTSF  726
            G   YG+               +  +  EL +LE+ +  +F
Sbjct  421  GVTVYGRFPQKTIDLIFNRTREMIDSSAELDSLERTSTKAF  461


 Score = 98.7 bits (244),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 43/67 (64%), Gaps = 0/67 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F  + + P +  A+++  + +PT IQ +++PLIL G DV+  A TGSGKT AF IP+++ 
Sbjct  30  FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK  89

Query  64  VYETLKD  70
           + + +  
Sbjct  90  LKQHVPQ  96


>sp|Q4WQM4|HAS1_ASPFU ATP-dependent RNA helicase has1 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=has1 PE=3 SV=2
Length=622

 Score = 273 bits (698),  Expect = 7e-81, Method: Composition-based stats.
 Identities = 84/429 (20%), Positives = 158/429 (37%), Gaps = 72/429 (17%)

Query  212  LGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQH  271
            LGL+ +    + +        ++   +                 +  +K   G  +    
Sbjct  145  LGLSEKTLKAINDMGFETMTEIQRRTIPPLLA--------GRDVLGAAKTGSGKTLSFLI  196

Query  272  SGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
                 ++  +F P N    ++V P+RELA Q     ++  +Y         ++IGG   R
Sbjct  197  PAVEMLSALRFKPRNGTGVIVVSPTRELALQIFGVARELCQYHSQTY---GIVIGGANRR  253

Query  331  DQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHN  389
             +   L  GV++++ TPGRL D + +T       ++ LV+DEAD +L  G+ D + ++  
Sbjct  254  AEAEKLMKGVNLLIATPGRLLDHLQNTQGFVFKNLKTLVIDEADRILEVGFEDEMRQIVK  313

Query  390  QIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH-FPTWVDLK--GEDSVPDTVHHVVV  446
             +P      +  Q ++ SAT  +  V+ L+   +   P ++++    E S  + +    V
Sbjct  314  ILP-----SEERQTMLFSAT-QTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYV  367

Query  447  PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM  506
                                                          +       +K +  
Sbjct  368  ICEADK----------------------------------------RFLLLFSFLKRNLK  387

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
             + I+F  +        +                  + LHG +K  +R      F     
Sbjct  388  KKIIVFFSSCNCVKYHAELL---------NYIDLPVLELHGKQKQQKRTNTFFEFCNAKQ  438

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA-ERMGLAISLVATEKEK  625
              LICTDVAARG+DI  V ++I    PD+ ++Y+HR+GR  R     G ++  +   +  
Sbjct  439  GTLICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTNAKGRSLMFLQPSEVG  498

Query  626  VWYHVCSSR  634
               H+  +R
Sbjct  499  FLKHLKEAR  507


 Score = 106 bits (265),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 50/93 (54%), Gaps = 5/93 (5%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+E+G+  +  +A+ +M +   T+IQ  +IP +L G DVL AA+TGSGKT +F IP +++
Sbjct  142  FTELGLSEKTLKAINDMGFETMTEIQRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVEM  201

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
            +       + G     T     S   +  +  +
Sbjct  202  LSALRFKPRNG-----TGVIVVSPTRELALQIF  229


>sp|Q756G5|DBP8_EREGS ATP-dependent RNA helicase DBP8 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DBP8 PE=3 SV=1
Length=435

 Score = 267 bits (683),  Expect = 8e-81, Method: Composition-based stats.
 Identities = 103/465 (22%), Positives = 175/465 (38%), Gaps = 75/465 (16%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
               KDLG+A  +   + +  +     ++ A +         +       +  +K   G  
Sbjct  6    STFKDLGVAKWLAEALNSMKITQPTTIQKACIP--------EILAGRDCIGGAKTGSGKT  57

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
            +         +T+    P     +++ P+RELA Q     +QF        +R  L++GG
Sbjct  58   IAFAA---PMLTKWSADPCGMFGIVLTPTRELAMQI---AEQFTALGSVMNIRVALVVGG  111

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN----LSQVRFLVLDEADGLLSQGYSD  382
                 Q   L+     ++ TPGRL   +     +    L +VR+LVLDEAD LL+  +SD
Sbjct  112  EDIVSQALELQRKPHFIIATPGRLAHHIMHSGEDTIGGLKRVRYLVLDEADILLTDTFSD  171

Query  383  FINRMHNQIPQVTSDGKRLQVIVCSATLHSF-----DVKKLSEKIMHFPTWVDLKGEDSV  437
             +      +P      ++ Q ++ +AT+        D    S K   F   V+   + +V
Sbjct  172  ALATCVQILP----PKEKRQNLLFTATMTDQVLALKDAPPTSGKPPLFSFHVENLDDLAV  227

Query  438  PDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYA  497
            P ++    + V       +                                       Y 
Sbjct  228  PASLQTTYLLVPEHVKEAY--------------------------------------LYQ  249

Query  498  VRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQN  557
            V + +E+K   AI+F    I  + L +  +Q          +     LH      ER  +
Sbjct  250  VLSSEEYKSKSAIVFVNRTISAEILRRMLMQL---------EIRVTSLHSQMPQRERTNS  300

Query  558  LERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAIS  617
            L+RF+    R LI TDVA+RG+DI  V  V+N  +P     Y+HR GR  RA R G A+S
Sbjct  301  LQRFRANAARVLIATDVASRGLDIPAVQLVVNYDIPANPDTYIHRAGRTARAGRGGEALS  360

Query  618  LVATEKEKVWYHVCSSRGKGCYN-TRLKEDGGCTIWYNEMQLLSE  661
             +A +       +    GK     T++ +        N++ +   
Sbjct  361  FIAPKDVSRIQAIEERIGKKMDEFTKVGDTALIRKSLNKVTVAKR  405


 Score = 102 bits (255),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 43/174 (25%), Positives = 70/174 (40%), Gaps = 20/174 (11%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F ++GV   +A+A+  M    PT IQ   IP IL G D +  A+TGSGKT AF+ P++
Sbjct  6    STFKDLGVAKWLAEALNSMKITQPTTIQKACIPEILAGRDCIGGAKTGSGKTIAFAAPML  65

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA----------IGSDGLCC  111
                                    +   +  M   ++ +A            +G + +  
Sbjct  66   TKW---------SADPCGMFGIVLTPTRELAMQIAEQFTALGSVMNIRVALVVGGEDIVS  116

Query  112  QSREVKEW-HGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFG  164
            Q+ E++   H   AT G +     +       GL RV +  +  +  L TD F 
Sbjct  117  QALELQRKPHFIIATPGRLAHHIMHSGEDTIGGLKRVRYLVLDEADILLTDTFS  170


>sp|Q2UUN6|HAS1_ASPOR ATP-dependent RNA helicase has1 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=has1 
PE=3 SV=2
Length=596

 Score = 272 bits (696),  Expect = 8e-81, Method: Composition-based stats.
 Identities = 95/446 (21%), Positives = 165/446 (37%), Gaps = 77/446 (17%)

Query  208  NGKDLGLA--FEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVAL-----  258
            NG+DL  A    +P    +   F    L    +K     G E      +     L     
Sbjct  99   NGEDLPSADTIRLPQQDGDPVKFTELGLSEKTMKGIEGMGFETMTEVQRRTIPPLLAGRD  158

Query  259  ----SKAPDGYIVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYI  313
                +K   G  +         ++  +F P N   A+IV P+RELA Q    +++   + 
Sbjct  159  VLGAAKTGSGKTLSFLIPAIEMLSALRFKPRNGTGAIIVSPTRELALQIFGQVRELLAHH  218

Query  314  DNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEA  372
                    ++IGG   R +   L  GV+++V TPGRL D + +T       +R L++DEA
Sbjct  219  SQTY---GIVIGGANRRAEAEKLMKGVNLLVATPGRLLDHLQNTQGFVFKNLRTLIIDEA  275

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH-FPTWVDL  431
            D +L  G+ D + ++   +P      +  Q ++ SAT  +  V+ L+   +   P ++++
Sbjct  276  DRILEVGFEDEMRQIAKILP-----SENRQTMLFSAT-QTTKVEDLARISLRPGPLYINV  329

Query  432  K--GEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAI  489
                E S  + +    V                                           
Sbjct  330  DHRKEHSTVEGLEQGYVICEADK-------------------------------------  352

Query  490  KILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDR  549
               +       +K +   + I+F  +        +                  + LHG +
Sbjct  353  ---RFLLLFSFLKRNLKKKIIVFLSSCNSVKYYGELL---------NYIDLPVLDLHGKQ  400

Query  550  KPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA  609
            K  +R      F       LICTDVAARG+DI  V ++I    PD+ ++Y+HR+GR  R 
Sbjct  401  KQQKRTNTFFEFCNAKQGTLICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARG  460

Query  610  ER-MGLAISLVATEKEKVWYHVCSSR  634
                G ++  +   +     H+  +R
Sbjct  461  SNGKGRSLMFLQPSEVGFLKHLKEAR  486


 Score = 106 bits (265),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 50/99 (51%), Gaps = 5/99 (5%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+E+G+  +  + +E M +   T++Q  +IP +L G DVL AA+TGSGKT +F IP I++
Sbjct  121  FTELGLSEKTMKGIEGMGFETMTEVQRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAIEM  180

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            +       + G     T     S   +  +  + +    
Sbjct  181  LSALRFKPRNG-----TGAIIVSPTRELALQIFGQVREL  214


>sp|Q8Y755|CSHB_LISMO DEAD-box ATP-dependent RNA helicase CshB 
OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 
/ EGD-e) OX=169963 GN=cshB PE=2 SV=1
Length=435

 Score = 267 bits (683),  Expect = 8e-81, Method: Composition-based stats.
 Identities = 107/481 (22%), Positives = 184/481 (38%), Gaps = 68/481 (14%)

Query  217  EIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN--  274
                        P   L   +L    G  E     +     + K           +G   
Sbjct  2    TKKSRFDQFGFQPFIGLAIDKL----GFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTH  57

Query  275  ----AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
                  +       +A +A+I  PSRELA Q  N I++  KY    ++   L+IGG   +
Sbjct  58   TFILPIINNVNPEKDAVQAVITAPSRELATQIYNEIRKVTKY-SEKEIAVQLVIGGTDKQ  116

Query  331  DQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ  390
              +  L+    I+VGTPGR++DL+    L +   + LV+DEAD  L  G+ + ++ +  +
Sbjct  117  RAIDKLKKQPQIIVGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGK  176

Query  391  IPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNP  450
            +P        LQ++V SAT+    +K    K M  P +  ++ + +   TV H ++    
Sbjct  177  MPA------NLQMLVFSATIP-QKLKPFLSKYMENPRYEHIQPKVAASKTVEHRIMATRS  229

Query  451  KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAI  510
            +                                         K +     +   +   AI
Sbjct  230  RN----------------------------------------KLDLLKNVLVGSQPYLAI  249

Query  511  IFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLI  570
            +F  TK   D +    I++G              +HGD  P ERK+ +++ +  D ++++
Sbjct  250  VFTNTKTTADEVANGLIERG---------LKVAKIHGDVNPRERKRTMKQIENLDYQYVV  300

Query  571  CTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
             TD+AARGIDI G+ +V+N  LPD+   Y+HR GR GRA   G+A++L     E     +
Sbjct  301  ATDLAARGIDIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIALTLFEPADEDRLNQL  360

Query  631  CSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVD-EFDGKVT  689
                 +  +     ++       N         E  +     +    K      +  K+ 
Sbjct  361  EKMGIEFKHVDWKNKEFVTLEDRNRRAKREAKRETADPREIGMRKKAKQKGKPNYKKKIN  420

Query  690  Y  690
            Y
Sbjct  421  Y  421


 Score = 90.6 bits (223),  Expect = 6e-18, Method: Composition-based stats.
 Identities = 64/375 (17%), Positives = 131/375 (35%), Gaps = 69/375 (18%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F + G  P I  A++++ +  PT++Q + IP IL G  ++  ++TG+GKT  F +P+I
Sbjct  5    SRFDQFGFQPFIGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPII  64

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHG  121
              V           +         +   +     Y+        S+    +        G
Sbjct  65   NNV---------NPEKDAVQAVITAPSRELATQIYNEIRKVTKYSEK---EIAVQLVIGG  112

Query  122  CRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDN  181
                + + K K   ++     G  R+     + +L + T K                   
Sbjct  113  TDKQRAIDKLKKQPQIIVGTPG--RINDLIREQALFVHTAKTLV----------------  154

Query  182  YGEEFTMHDT---IGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAEL  238
                    D    +G   D+D    K   N + L  +  IP  +K              L
Sbjct  155  ----IDEADMTLDMGFLNDVDHIAGKMPANLQMLVFSATIPQKLK------------PFL  198

Query  239  KFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPK-ALIVEPSRE  297
                    ++       VA SK  +  I+ ++      + +   + + P  A++   ++ 
Sbjct  199  SKYMENPRYEHIQPK--VAASKTVEHRIMATRSRNKLDLLKNVLVGSQPYLAIVFTNTKT  256

Query  298  LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDI----VVGTPGRLDDL  353
             A++  N + +         L+   I G V  R++   ++   ++    VV T     DL
Sbjct  257  TADEVANGLIE-------RGLKVAKIHGDVNPRERKRTMKQIENLDYQYVVAT-----DL  304

Query  354  VSTGKLNLSQVRFLV  368
             + G +++  +  +V
Sbjct  305  AARG-IDIQGISHVV  318


>sp|A2Q9T6|HAS1_ASPNC ATP-dependent RNA helicase has1 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=has1 PE=3 SV=1
Length=606

 Score = 273 bits (697),  Expect = 9e-81, Method: Composition-based stats.
 Identities = 97/457 (21%), Positives = 165/457 (36%), Gaps = 77/457 (17%)

Query  197  DIDKGHVKFSKNGKDLGL--AFEIPPHMKNQALFPACVLKNAELK--FNFGEEEFKFPPK  252
            D D    K   NG DL    A  +P        F    L    +K   + G E      +
Sbjct  94   DEDDNEGKEDGNGADLPSLDAVRLPQTDGEPKKFTELNLSEKTMKGIQDMGFETMTEIQQ  153

Query  253  DGFVAL---------SKAPDGYIVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQT  302
                 L         +K   G  +         ++  +F P N    L+V P+RELA Q 
Sbjct  154  RTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVEMLSALRFKPRNGTGVLVVSPTRELALQI  213

Query  303  LNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNL  361
                ++   +         ++IGG   R +   L  GV++++ TPGRL D + +T     
Sbjct  214  FGVARELMAHHSQTY---GIVIGGANRRAEAEKLTKGVNLLIATPGRLLDHLQNTPGFVF  270

Query  362  SQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEK  421
              ++ LV+DEAD +L  G+ D + ++   +P      +  Q ++ SAT  +  V+ L+  
Sbjct  271  KNLKTLVIDEADRILEVGFEDEMRQIVKILP-----SEERQTMLFSAT-QTTKVEDLARI  324

Query  422  IMH-FPTWVDLK--GEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPG  478
             +   P ++++    E S  + +    V                                
Sbjct  325  SLRPGPLYINVDHRKEHSTVEGLEQGYVICEADK--------------------------  358

Query  479  ANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGH  538
                          +       +K +   + I+F  +        +              
Sbjct  359  --------------RFLLLFSFLKRNLKKKIIVFFSSCNCVKYHAELL---------NYI  395

Query  539  QFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQN  598
                + LHG +K  +R      F       LICTDVAARG+DI  V ++I    PD+ ++
Sbjct  396  DLPVLELHGKQKQQKRTNTFFEFCNAKQGTLICTDVAARGLDIPAVDWIIQFDPPDDTRD  455

Query  599  YVHRIGRVGRA-ERMGLAISLVATEKEKVWYHVCSSR  634
            YVHR+GR  R     G ++  +   +     H+  +R
Sbjct  456  YVHRVGRTARGVNGKGRSLMFLQPSEVGFLKHLKEAR  492


 Score = 104 bits (260),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 49/95 (52%), Gaps = 5/95 (5%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F+E+ +  +  + +++M +   T+IQ  +IP +L G DVL AA+TGSGKT +F IP +
Sbjct  125  KKFTELNLSEKTMKGIQDMGFETMTEIQQRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAV  184

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
            +++       + G     T     S   +  +  +
Sbjct  185  EMLSALRFKPRNG-----TGVLVVSPTRELALQIF  214


>sp|Q2GMX1|HAS1_CHAGB ATP-dependent RNA helicase HAS1 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=HAS1 PE=3 SV=1
Length=586

 Score = 272 bits (695),  Expect = 9e-81, Method: Composition-based stats.
 Identities = 84/433 (19%), Positives = 159/433 (37%), Gaps = 76/433 (18%)

Query  219  PPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVAL------------SKAPDGYI  266
            P    +   F    L +  +  +  E  F    +     +            +K   G  
Sbjct  105  PSVSTDAQAFSELNLSDKTM-MSINEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKT  163

Query  267  VKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
            +         +   +F P N    ++V P+RELA Q     ++  K          ++IG
Sbjct  164  LAFLIPAIEMLNSLRFKPRNGTGVIVVTPTRELALQIFGVARELMKNHSQTY---GVVIG  220

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            G   R +   L  GV++++ TPGRL D +  G      ++ L++DEAD +L  G+ D + 
Sbjct  221  GANIRAEEDKLGKGVNLLIATPGRLLDHLRRGSFVFKNLKSLIIDEADRILEVGFEDEMR  280

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH-FPTWVDLKGED--SVPDTVH  442
             +   +P+     +  Q ++ SAT  +  V+ L+   +   P ++++  E   S  + + 
Sbjct  281  HIVKILPK-----ENRQTMLFSAT-QTTKVEDLARISLRPGPLYINVDEEKQFSTVEGLD  334

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
               V V+                                           +       +K
Sbjct  335  QGYVIVDADK----------------------------------------RFLLLFSFLK  354

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
            +    + I+F  +        +           +      + LHG +K  +R      F 
Sbjct  355  KMAKKKIIVFLSSCNSVKYYSELL---------QYIDLQVLDLHGKQKQQKRTNTFFEFC  405

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER-MGLAISLVAT  621
                  LICTDVAARG+DI  V +++    PD+ ++Y+HR+GR  R     G ++  +  
Sbjct  406  NAKQGTLICTDVAARGLDIPQVDWIVQFDPPDDPRDYIHRVGRTARGNNTKGRSLLFLQP  465

Query  622  EKEKVWYHVCSSR  634
             +     H+ +++
Sbjct  466  CELGFLAHLKAAK  478


 Score = 105 bits (261),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 31/94 (33%), Positives = 48/94 (51%), Gaps = 5/94 (5%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            AFSE+ +  +   ++ EM +   T+IQ   IP +L G DVL AA+TGSGKT AF IP I+
Sbjct  113  AFSELNLSDKTMMSINEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE  172

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
            ++       + G     T     +   +  +  +
Sbjct  173  MLNSLRFKPRNG-----TGVIVVTPTRELALQIF  201


>sp|Q5AJD0|DBP5_CANAL ATP-dependent RNA helicase DBP5 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP5 
PE=3 SV=2
Length=540

 Score = 270 bits (691),  Expect = 9e-81, Method: Composition-based stats.
 Identities = 101/463 (22%), Positives = 186/463 (40%), Gaps = 82/463 (18%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K+ ++LGL+ E+   +          ++   L                 +  S++  G  
Sbjct  150  KSFEELGLSPELLKGLYAMKFNKPSKIQEKALPLLLSNPP------RNMIGQSQSGTGKT  203

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
                 +    +++       P+ L + P+RELA QTL  I    K+ +   +   L++  
Sbjct  204  AAFSLT---MLSRVDPTIKMPQCLCLSPTRELARQTLEVITTMGKFTN---ITTQLVVPN  257

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLS-QGYSDFIN  385
               R           ++VGTPG   DL+   +LNLS+++  VLDEAD +L  QG  D   
Sbjct  258  AIPRGS----SVNAQVLVGTPGIAIDLIRRRQLNLSKMKVFVLDEADNMLEAQGLGDQAI  313

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
            R+   +P      + +Q+++ SAT  + +V++ +E+++     ++LK E+   D +  + 
Sbjct  314  RVKKALP------RGVQLVLFSATFPT-EVREYAERLVPDANSLELKQEELNVDGIKQLY  366

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
            +    +  +                                   ++L   Y +  I    
Sbjct  367  MDCRSEQHKF----------------------------------EVLCELYGLLTI----  388

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
               +IIF   K   D L     ++G          +   LHG     +R + ++ F++G 
Sbjct  389  -GSSIIFVEKKETADVLYGKMKKEG---------HTVSVLHGGLDNTDRDRLIDDFREGR  438

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPD------EKQNYVHRIGRVGRAERMGLAISLV  619
             + LI T+V ARGIDI  V  V+N  +P       +   Y+HRIGR GR  R+G++IS +
Sbjct  439  SKVLITTNVLARGIDIASVSMVVNYDMPTDKYGKPDPSTYLHRIGRTGRFGRVGVSISFI  498

Query  620  ATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEI  662
               +         +       TR+  D     W    +++ ++
Sbjct  499  HDRRSYDILMAIKAYFGNVEMTRVPTD----DWDEVEKIVKKV  537


 Score = 94.4 bits (233),  Expect = 7e-19, Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 53/109 (49%), Gaps = 11/109 (10%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            + +F E+G+ PE+ + +  M +  P+ IQ +++PL+L     +++  +++G+GKT AFS+
Sbjct  149  VKSFEELGLSPELLKGLYAMKFNKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFSL  208

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
             ++  V  T+K  Q             S   +      +  +     ++
Sbjct  209  TMLSRVDPTIKMPQ---------CLCLSPTRELARQTLEVITTMGKFTN  248


>sp|P38719|DBP8_YEAST ATP-dependent RNA helicase DBP8 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP8 
PE=1 SV=1
Length=431

 Score = 267 bits (682),  Expect = 1e-80, Method: Composition-based stats.
 Identities = 104/491 (21%), Positives = 179/491 (36%), Gaps = 79/491 (16%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             K LGL+  +   ++   +     ++ A +         K       +  +K   G  + 
Sbjct  4    FKSLGLSKWLTESLRAMKITQPTAIQKACIP--------KILEGRDCIGGAKTGSGKTIA  55

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
                    +T+    P+    +++ P+RELA Q     +QF     +  +R  +I+GG +
Sbjct  56   F---AGPMLTKWSEDPSGMFGVVLTPTRELAMQI---AEQFTALGSSMNIRVSVIVGGES  109

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN----LSQVRFLVLDEADGLLSQGYSDFI  384
               Q   L+     ++ TPGRL   + +   +    L + ++LVLDEAD LL+  ++D +
Sbjct  110  IVQQALDLQRKPHFIIATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHL  169

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH------FPTWVDLKGEDSVP  438
                + +P       + Q ++ +AT+    VK L    +       F   V+     ++P
Sbjct  170  ATCISALP----PKDKRQTLLFTATITDQ-VKSLQNAPVQKGKPPLFAYQVESVDNVAIP  224

Query  439  DTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAV  498
             T+    + V       +                                       Y +
Sbjct  225  STLKIEYILVPEHVKEAY--------------------------------------LYQL  246

Query  499  RAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNL  558
               +E++   AIIF    +  + L +   Q          +     LH      ER  +L
Sbjct  247  LTCEEYENKTAIIFVNRTMTAEILRRTLKQL---------EVRVASLHSQMPQQERTNSL  297

Query  559  ERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
             RF+    R LI TDVA+RG+DI  V  V+N  +P +   ++HR GR  RA R+G AIS 
Sbjct  298  HRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISF  357

Query  619  VATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQ--VEPD  676
            V          +     K    T  K      I     ++     E L     +   E  
Sbjct  358  VTQRDVSRIQAIEDRINKKMTETN-KVHDTAVIRKALTKVTKAKRESLMAMQKENFGERK  416

Query  677  IKVPVDEFDGK  687
             +    + DGK
Sbjct  417  RQQKKKQNDGK  427


 Score = 101 bits (251),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 37/157 (24%), Positives = 61/157 (39%), Gaps = 20/157 (13%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            MA F  +G+   + +++  M    PT IQ   IP IL G D +  A+TGSGKT AF+ P+
Sbjct  1    MADFKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPM  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA----------IGSDGLC  110
            +    E                   +   +  M   ++ +A            +G + + 
Sbjct  61   LTKWSE---------DPSGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIV  111

Query  111  CQSREVKEW-HGCRATKGLMKGKHYYEVSCHDQGLCR  146
             Q+ +++   H   AT G +             GL R
Sbjct  112  QQALDLQRKPHFIIATPGRLAHHIMSSGDDTVGGLMR  148


>sp|A6ZT77|DBP8_YEAS7 ATP-dependent RNA helicase DBP8 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DBP8 PE=3 SV=1
Length=431

 Score = 267 bits (682),  Expect = 1e-80, Method: Composition-based stats.
 Identities = 104/491 (21%), Positives = 179/491 (36%), Gaps = 79/491 (16%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             K LGL+  +   ++   +     ++ A +         K       +  +K   G  + 
Sbjct  4    FKSLGLSKWLTESLRAMKITQPTAIQKACIP--------KILEGRDCIGGAKTGSGKTIA  55

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
                    +T+    P+    +++ P+RELA Q     +QF     +  +R  +I+GG +
Sbjct  56   F---AGPMLTKWSEDPSGMFGVVLTPTRELAMQI---AEQFTALGSSMNIRVSVIVGGES  109

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN----LSQVRFLVLDEADGLLSQGYSDFI  384
               Q   L+     ++ TPGRL   + +   +    L + ++LVLDEAD LL+  ++D +
Sbjct  110  IVQQALDLQRKPHFIIATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHL  169

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH------FPTWVDLKGEDSVP  438
                + +P       + Q ++ +AT+    VK L    +       F   V+     ++P
Sbjct  170  ATCISALP----PKDKRQTLLFTATITDQ-VKSLQNAPVQKGKPPLFAYQVESVDNVAIP  224

Query  439  DTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAV  498
             T+    + V       +                                       Y +
Sbjct  225  STLKIEYILVPEHVKEAY--------------------------------------LYQL  246

Query  499  RAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNL  558
               +E++   AIIF    +  + L +   Q          +     LH      ER  +L
Sbjct  247  LTCEEYENKTAIIFVNRTMTAEILRRTLKQL---------EVRVASLHSQMPQQERTNSL  297

Query  559  ERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
             RF+    R LI TDVA+RG+DI  V  V+N  +P +   ++HR GR  RA R+G AIS 
Sbjct  298  HRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISF  357

Query  619  VATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQ--VEPD  676
            V          +     K    T  K      I     ++     E L     +   E  
Sbjct  358  VTQRDVSRIQAIEDRINKKMTETN-KVHDTAVIRKALTKVTKAKRESLMAMQKENFGERK  416

Query  677  IKVPVDEFDGK  687
             +    + DGK
Sbjct  417  RQQKKKQNDGK  427


 Score = 101 bits (251),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 37/157 (24%), Positives = 61/157 (39%), Gaps = 20/157 (13%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            MA F  +G+   + +++  M    PT IQ   IP IL G D +  A+TGSGKT AF+ P+
Sbjct  1    MADFKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPM  60

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA----------IGSDGLC  110
            +    E                   +   +  M   ++ +A            +G + + 
Sbjct  61   LTKWSE---------DPSGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIV  111

Query  111  CQSREVKEW-HGCRATKGLMKGKHYYEVSCHDQGLCR  146
             Q+ +++   H   AT G +             GL R
Sbjct  112  QQALDLQRKPHFIIATPGRLAHHIMSSGDDTVGGLMR  148


>sp|Q7S2N9|HAS1_NEUCR ATP-dependent RNA helicase has-1 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=has-1 PE=3 SV=1
Length=578

 Score = 271 bits (693),  Expect = 1e-80, Method: Composition-based stats.
 Identities = 83/428 (19%), Positives = 160/428 (37%), Gaps = 71/428 (17%)

Query  212  LGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQH  271
            L L+ +    +          ++   +                 +  +K   G  +    
Sbjct  112  LNLSDKTMKAIAEMGFTKMTEIQRRGIPPLLA--------GKDVLGAAKTGSGKTLAFLI  163

Query  272  SGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
                 ++  +F P N   A++V P+RELA Q     ++  K          ++IGG   R
Sbjct  164  PAIEMLSSLRFKPRNGTGAIVVTPTRELALQIFGVARELMKNHSQTY---GVVIGGANRR  220

Query  331  DQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ  390
             +   L  GV++++ TPGRL D +         +R L++DEAD +L  G+ D + ++   
Sbjct  221  AEAEKLGKGVNLLIATPGRLLDHLQNTPFVFKNMRSLIIDEADRILEIGFEDEMRQIIKI  280

Query  391  IPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH-FPTWVDLKGED--SVPDTVHHVVVP  447
            +P+     +  Q ++ SAT  +  V+ L+   +   P +V++  E   S  + +    V 
Sbjct  281  LPK-----EDRQTMLFSAT-QTTKVEDLARISLRPGPLYVNVDEEKQFSTVEGLDQGYVV  334

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
            V+                                           +       +K+ +  
Sbjct  335  VDADK----------------------------------------RFLLLFSFLKKMQKK  354

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
            + I+F  +        +           +      + LHG +K  +R      F      
Sbjct  355  KVIVFFSSCNSVKYYSELL---------QYIDLQVLDLHGKQKQQKRTNTFFEFCNAKQG  405

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER-MGLAISLVATEKEKV  626
             LICTDVAARG+DI  V +++    PD+ ++Y+HR+GR  R     G ++  +   +   
Sbjct  406  TLICTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGNNTKGRSLLFLQPNELGF  465

Query  627  WYHVCSSR  634
              H+ +++
Sbjct  466  LAHLKAAK  473


 Score = 107 bits (267),  Expect = 6e-23, Method: Composition-based stats.
 Identities = 31/95 (33%), Positives = 48/95 (51%), Gaps = 5/95 (5%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              FSE+ +  +  +A+ EM +   T+IQ   IP +L G DVL AA+TGSGKT AF IP I
Sbjct  107  TDFSELNLSDKTMKAIAEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAI  166

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
            +++       + G     T     +   +  +  +
Sbjct  167  EMLSSLRFKPRNG-----TGAIVVTPTRELALQIF  196


>sp|A3LP87|DBP8_PICST ATP-dependent RNA helicase DBP8 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DBP8 PE=3 SV=2
Length=445

 Score = 267 bits (682),  Expect = 1e-80, Method: Composition-based stats.
 Identities = 102/480 (21%), Positives = 175/480 (36%), Gaps = 79/480 (16%)

Query  238  LKFNFGEEEFKFPPKDGFVALSKAPDGY---------IVKSQHSGNAQVTQTKFLPNAPK  288
            L       +   P       + K   G+           K+       +TQ    P    
Sbjct  12   LSEALAAMKIHTPTAIQSGCIPKILSGHDCIGGAKTGSGKTIAFAAPMLTQWSEDPFGIF  71

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
             L++ P+RELA Q     +QF     +  ++  +++GG     Q   L+     V+ TPG
Sbjct  72   GLVLTPTRELALQI---AEQFAALGASMNIKISVVVGGEDFVKQTLELQKKPHFVIATPG  128

Query  349  RLDDLV----STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            RL D +          L ++++LVLDEAD LLS  +   + R  + +P      ++ Q  
Sbjct  129  RLADHILNSGEETISGLRRIKYLVLDEADRLLSNSFGGDLERCFSVLP----PSEKRQTC  184

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + +AT+    V+ L EK                                      GK  +
Sbjct  185  LFTATVTDA-VRALKEK----------------------------------PPAQGKPPV  209

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ--AIIFCRTKIDCDNL  522
               +V   D     +     +      +K  Y    ++  + ++  A+IF       + L
Sbjct  210  FLHEVETVDQVAIPSTLSIKYVFVPSYVKEAYLNSILRLPQYEKSTAVIFVNRTTTAEVL  269

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
             +   +          +F    LH +    ER  +++RFK G  R LI TDVA+RG+DI 
Sbjct  270  RRTLRKL---------EFRVASLHSEMPQSERTNSVQRFKAGAARILIATDVASRGLDIP  320

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTR  642
             V  V+N  +P +  +++HR+GR  RA R G A++++A +       +     K      
Sbjct  321  SVELVVNFDIPADPDDFIHRVGRTARAGRSGDAVTIIAEKDIDRIASIEERINKKMEL--  378

Query  643  LKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDE-FDGKVTYGQKRAAGGGSY  701
            L+E    ++          I + L  T       +     E F  K    +K+       
Sbjct  379  LEEVTDDSV----------ITDSLTATSVAKRESLMEMDKENFGEKRKINRKKRGLETEK  428


 Score = 101 bits (252),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 64/156 (41%), Gaps = 20/156 (13%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F ++GV   +++A+  M    PT IQ+  IP IL G D +  A+TGSGKT AF+ P++ 
Sbjct  2    SFEDLGVSRWLSEALAAMKIHTPTAIQSGCIPKILSGHDCIGGAKTGSGKTIAFAAPMLT  61

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA----------IGSDGLCCQ  112
               E                   +   +  +   ++ +A            +G +    Q
Sbjct  62   QWSE---------DPFGIFGLVLTPTRELALQIAEQFAALGASMNIKISVVVGGEDFVKQ  112

Query  113  SREV-KEWHGCRATKGLMKGKHYYEVSCHDQGLCRV  147
            + E+ K+ H   AT G +             GL R+
Sbjct  113  TLELQKKPHFVIATPGRLADHILNSGEETISGLRRI  148


>sp|Q4P7Z8|DBP5_USTMA ATP-dependent RNA helicase DBP5 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP5 PE=3 SV=1
Length=456

 Score = 267 bits (683),  Expect = 2e-80, Method: Composition-based stats.
 Identities = 97/471 (21%), Positives = 182/471 (39%), Gaps = 79/471 (17%)

Query  199  DKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVAL  258
                +  +K+ + LGL   +   +          ++   L                 +  
Sbjct  56   PNSPLYSAKSFEALGLHENLLKGIYAMKYQKPSKIQEKALPLLLQNPP------KNMIGQ  109

Query  259  SKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKL  318
            S++  G       +    +++  +    P+A+ + PSRELA Q ++  +   K+ +   +
Sbjct  110  SQSGTGKTAAFILT---MLSRIDYDLQKPQAIALAPSRELARQIMDVARTMSKFTN---V  163

Query  319  RELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQ  378
               L +     R +    +    +++GTPG+  D++ +  ++ + ++  VLDEAD +L Q
Sbjct  164  TTCLCLPDEVKRGE----KITAQLIIGTPGKTFDMIKSKGIDTAAIKVFVLDEADNMLDQ  219

Query  379  -GYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSV  437
                +   R+ N +P      K  Q+++ SAT  + +V   + +I      + LK E+  
Sbjct  220  QSLGEQSIRVKNTMP------KSCQLVLFSATFPT-NVYDFAVRIAPGANEIRLKQEELS  272

Query  438  PDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYA  497
             + +    +    +                                         K E  
Sbjct  273  VEGIKQFYMDCKDEDH---------------------------------------KYEVL  293

Query  498  VRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQN  557
            V       + Q+IIFC  +   D + Q   Q+G              LHG  +  +R + 
Sbjct  294  VELYNLLTIGQSIIFCAKRETADRIAQKMTQEG---------HKVDSLHGRLETADRDRT  344

Query  558  LERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP------DEKQNYVHRIGRVGRAER  611
            ++ F+ G  + LI T+V ARGIDI  V  VIN  +P       + + Y+HRIGR GR  R
Sbjct  345  IDAFRDGKSKVLISTNVIARGIDIQQVTLVINYDMPLTQTGEADAETYLHRIGRTGRFGR  404

Query  612  MGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEI  662
             G++I+ V  ++   +        K C  TR+  +    + Y   + L +I
Sbjct  405  KGVSINFVHDQQSWSYMDQIEKALK-CQITRVATNDLEEMEYTIKEALKQI  454


 Score = 89.0 bits (219),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 50/127 (39%), Gaps = 13/127 (10%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSIP  59
             +F  +G+   + + +  M +  P+ IQ +++PL+L     +++  +++G+GKT AF + 
Sbjct  64   KSFEALGLHENLLKGIYAMKYQKPSKIQEKALPLLLQNPPKNMIGQSQSGTGKTAAFILT  123

Query  60   VIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI--GSDGLCCQSREVK  117
            ++  +   L+  Q             +   +      D     +         C   EVK
Sbjct  124  MLSRIDYDLQKPQ---------AIALAPSRELARQIMDVARTMSKFTNVTTCLCLPDEVK  174

Query  118  EWHGCRA  124
                  A
Sbjct  175  RGEKITA  181


>sp|Q5T1V6|DDX59_HUMAN Probable ATP-dependent RNA helicase DDX59 
OS=Homo sapiens OX=9606 GN=DDX59 PE=1 SV=1
Length=619

 Score = 272 bits (695),  Expect = 2e-80, Method: Composition-based stats.
 Identities = 99/456 (22%), Positives = 191/456 (42%), Gaps = 70/456 (15%)

Query  186  FTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEE  245
            +  H  I   L++ +  ++  K  + LG+  +     +    F  C L    L  N  + 
Sbjct  168  YKEHPFI---LNLQEDQIENLK--QQLGILVQGQEVTRPIIDFEHCSLPE-VLNHNLKKS  221

Query  246  EFKFPPKDGFVALSKAPDG-YIVKSQHSGNAQ--------VTQTKFLPNAPKALIVEPSR  296
             ++ P       +     G  I+ S  +G+ +        + +  F    P ALI+ P+R
Sbjct  222  GYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMRALFESKTPSALILTPTR  281

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVST  356
            ELA Q     K+    +  P+++ +L++GG+    QL  L+  V +++ TPGRL D++  
Sbjct  282  ELAIQIERQAKELMSGL--PRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDIIKQ  339

Query  357  GKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVK  416
              + L  V+ +V+DEAD +L  G+   +  +   IP         Q I+ SAT+ +  ++
Sbjct  340  SSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPN------DCQTILVSATIPT-SIE  392

Query  417  KLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTR  476
            +L+ +++H P  +    ++     V  +++ V                            
Sbjct  393  QLASQLLHNPVRIITGEKNLPCANVRQIILWVE---------------------------  425

Query  477  PGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKK  536
                 P    +  +IL  +   +          ++F   K+  D L +          +K
Sbjct  426  ----DPAKKKKLFEILNDKKLFK-------PPVLVFVDCKLGADLLSE--------AVQK  466

Query  537  GHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEK  596
                  + +H ++   ERK  L+   +GD   ++ T V  RG+D+  V  V+N  +P   
Sbjct  467  ITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSM  526

Query  597  QNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
              YVH+IGRVGR  + G AI+ +    +++++ +  
Sbjct  527  DEYVHQIGRVGRLGQNGTAITFINNNSKRLFWDIAK  562


 Score = 94.0 bits (232),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 26/106 (25%), Positives = 44/106 (42%), Gaps = 9/106 (8%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F    +   +   +++  + +PT IQ + IP+ L G D+L +A+TGSGKT AF +PVI  
Sbjct  205  FEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMR  264

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGL  109
                 K         T      +   +  +    +      G   +
Sbjct  265  ALFESK---------TPSALILTPTRELAIQIERQAKELMSGLPRM  301


>sp|Q09916|HAS1_SCHPO ATP-dependent RNA helicase has1 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=has1 
PE=1 SV=1
Length=578

 Score = 270 bits (691),  Expect = 3e-80, Method: Composition-based stats.
 Identities = 88/445 (20%), Positives = 167/445 (38%), Gaps = 72/445 (16%)

Query  196  LDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGF  255
            ++++       +   DL L+  I   +K         ++   +                 
Sbjct  78   VNLNASSTSDIEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLA--------GRDV  129

Query  256  VALSKAPDGYIVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYID  314
            +  +K   G  +         +   KF P N    +I+ P+RELA Q     K+  KY  
Sbjct  130  LGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHH  189

Query  315  NPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEAD  373
                   ++IGG   R +   L  GV+++V TPGRL D + +T       +R LV+DEAD
Sbjct  190  QT---FGIVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEAD  246

Query  374  GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH-FPTWVDLK  432
             +L  G+ D + ++   +P      +  Q ++ SAT  +  V+ L+   +   P +V++ 
Sbjct  247  RILEIGFEDEMRQIMKILP-----SENRQTLLFSAT-QTTKVEDLARISLKPGPLYVNVD  300

Query  433  G--EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIK  490
                 S  + +    V V+                                         
Sbjct  301  SGKPTSTVEGLEQGYVVVDSDK--------------------------------------  322

Query  491  ILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRK  550
              +       +K +   + I+F  +      + +                  + LHG +K
Sbjct  323  --RFLLLFSFLKRNLKKKVIVFMSSCASVKYMAELL---------NYIDLPVLDLHGKQK  371

Query  551  PHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAE  610
               R      F   +   L+CT+VAARG+DI  V +++    PD+ ++Y+HR+GR  R  
Sbjct  372  QQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTARGT  431

Query  611  R-MGLAISLVATEKEKVWYHVCSSR  634
            +  G ++  +A  +     ++ +++
Sbjct  432  KGTGKSLMFLAPSELGFLRYLKTAK  456


 Score = 109 bits (273),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 5/96 (5%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  FS++ +   I +A++EM +   T+IQ  SIP +L G DVL AA+TGSGKT AF IP 
Sbjct  88   IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPT  147

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
            I+++Y      + G     T     S   +  +  +
Sbjct  148  IEMLYALKFKPRNG-----TGVIIISPTRELALQIF  178


>sp|Q6BH93|HAS1_DEBHA ATP-dependent RNA helicase HAS1 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=HAS1 PE=3 SV=1
Length=568

 Score = 270 bits (689),  Expect = 4e-80, Method: Composition-based stats.
 Identities = 83/435 (19%), Positives = 160/435 (37%), Gaps = 74/435 (17%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
            + N ++ GL+      +K+        ++   +                 +  +K   G 
Sbjct  103  TDNFEEAGLSEPTLKAIKDMGFSKMTQVQAKTIPPLLA--------GRDVLGAAKTGSGK  154

Query  266  IVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
             +         +   +F P N    ++V P+RELA Q     ++   +         ++I
Sbjct  155  TLAFLIPAIEMLYSLRFKPRNGTGVVVVSPTRELALQIFGVARELMAHHSQT---FGIVI  211

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDF  383
            GG   R +   L  GV++++ TPGRL D + +T       V+ LV+DEAD +L  G+ + 
Sbjct  212  GGANRRQEAEKLMKGVNLLIATPGRLLDHLQNTQGFVFKNVKALVIDEADRILEIGFEEE  271

Query  384  INRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH-FPTWVDL--KGEDSVPDT  440
            + ++   +P      +  Q ++ SAT  +  V+ L+   +   P ++++  + E S    
Sbjct  272  MKQIIKILP-----NEDRQSMLFSAT-QTTKVEDLARISLRPGPLYINVASESEASTVAG  325

Query  441  VHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRA  500
            +    V                                              +       
Sbjct  326  LEQGYVVCESDK----------------------------------------RFLLLFSF  345

Query  501  IKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLER  560
            +K +   + I+F  +        +                  + LHG +K  +R      
Sbjct  346  LKRNVKKKIIVFLSSCNCVKYFGELL---------NYIDLPVLDLHGKQKQQKRTNTFFE  396

Query  561  FKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR--AERMGLAISL  618
            F       LICTDVAARG+DI  V ++I    PD+ ++Y+HR+GR  R  A   G ++  
Sbjct  397  FCNATQGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTAG-KGKSLMF  455

Query  619  VATEKEKVWYHVCSS  633
            +   +     ++ ++
Sbjct  456  LTPSELGFLRYLKAA  470


 Score = 108 bits (270),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 50/93 (54%), Gaps = 5/93 (5%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F E G+     +A+++M +   T +QA++IP +L G DVL AA+TGSGKT AF IP I++
Sbjct  106  FEEAGLSEPTLKAIKDMGFSKMTQVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEM  165

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
            +Y      + G     T     S   +  +  +
Sbjct  166  LYSLRFKPRNG-----TGVVVVSPTRELALQIF  193


>sp|Q6CJU1|DBP5_KLULA ATP-dependent RNA helicase DBP5 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP5 PE=3 SV=1
Length=469

 Score = 266 bits (681),  Expect = 4e-80, Method: Composition-based stats.
 Identities = 105/431 (24%), Positives = 174/431 (40%), Gaps = 76/431 (18%)

Query  244  EEEFKFPPKDGFVALSKAPDGYIVKSQHSGN-------AQVTQTKFLPNAPKALIVEPSR  296
            ++  K   K   + +   P   I +SQ             +T+     N+ +A+ + P+R
Sbjct  100  QKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPAR  159

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVST  356
            ELA QTL  I++  K+         L++     R++        +IVVGTPG + DL+  
Sbjct  160  ELARQTLEVIQEMGKFTKTS---SQLVVPDSFERNK----PITANIVVGTPGTVLDLIRR  212

Query  357  GKLNLSQVRFLVLDEADGLLS-QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDV  415
              LNL  ++  VLDEAD +L  QG  D   R+   +P      K  Q+++ SAT     V
Sbjct  213  KMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLP------KTCQLVLFSATF-DDGV  265

Query  416  KKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNT  475
            ++ ++KI+     ++L+  +     +  + +  + +  +                     
Sbjct  266  RQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHK---------------------  304

Query  476  RPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDK  535
                           IL   Y +  I       +IIF +TK   + L     ++G     
Sbjct  305  -------------YTILSELYGLLTI-----GSSIIFVKTKQTANLLYAKLKKEG-----  341

Query  536  KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD-  594
                     LHGD +  +R + ++ F++G  + LI T+V ARGIDI  V  V+N  LP  
Sbjct  342  ----HQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLPTL  397

Query  595  -----EKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGC  649
                 +   YVHRIGR GR  R G+AIS +  +K                 T++  D   
Sbjct  398  PNGQADPSTYVHRIGRTGRFGRTGVAISFIHDKKSFEVLSAIQKYFGDIEITKVPTDDLD  457

Query  650  TIWYNEMQLLS  660
             +     + L 
Sbjct  458  EMETIVKKALK  468


 Score = 64.8 bits (156),  Expect = 1e-09, Method: Composition-based stats.
 Identities = 19/74 (26%), Positives = 44/74 (59%), Gaps = 2/74 (3%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            + +F E+G+  E+ + +  M +  P+ IQ +++PL++     +++  +++G+GKT AFS+
Sbjct  78   VKSFEELGLSEELLKGLYAMKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSL  137

Query  59   PVIQIVYETLKDQQ  72
             ++  V   +   Q
Sbjct  138  TMLTRVDPNVNSTQ  151


>sp|Q4PEX7|DBP8_USTMA ATP-dependent RNA helicase DBP8 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP8 PE=3 SV=2
Length=531

 Score = 268 bits (685),  Expect = 6e-80, Method: Composition-based stats.
 Identities = 112/509 (22%), Positives = 186/509 (37%), Gaps = 46/509 (9%)

Query  228  FPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIV---KSQHSGNAQVTQTKFLP  284
            F +  +    ++ +    + K P     + +    +G  +       SG         L 
Sbjct  40   FSSIGISPMLIR-SLASLQIKVPTPIQSLTIPSVLEGRDLVGGAQTGSGKTLCFALPILN  98

Query  285  NAPK------ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
               K      A+++ P+REL  Q         +      LR  L++GG+    Q S L N
Sbjct  99   KLIKDMVGGFAVVLTPTRELGVQLHEQFVAVGE-GARMGLRCALVLGGMDMMKQASELAN  157

Query  339  -GVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV  394
                ++V TPGRL D + +G      L + +FLVLDEAD LL+  +   +  +++ +P  
Sbjct  158  LRPHVIVATPGRLVDHLRSGGGEEWGLRRCKFLVLDEADRLLTDTFKPELEYLYSVLPSA  217

Query  395  TSDGKRLQVIVCSATLHSFDVKKLSEK---IMHFPTWVDLKGEDSVPDTVHHVVVPVNP-  450
                K LQ ++ +ATL    V+  + K       P    ++ +   P+T+    V V   
Sbjct  218  ----KTLQTLLFTATLTEQVVEFANAKRPEGKPAPMVCKIEMDTKTPETLEQRYVFVPSH  273

Query  451  -KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ-  508
             +   L+  L    I+      +          E   E  +            +  +DQ 
Sbjct  274  VREPYLYHILRHPPIKPSSERVRKLNAKHQADRERKEENQRKSGKRRRTHHASDSDLDQD  333

Query  509  ---------AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLE  559
                      IIF         L     + G            V LH   +  ER +NL+
Sbjct  334  DDAALFLPATIIFTARCKTAATLSGMLAELG---------IPNVSLHSHLRQSERSENLQ  384

Query  560  RFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
             F+   V  LI TDV +RG+DI  V  VIN  LP   Q+YVHR+GR  R  + G AIS +
Sbjct  385  TFRAQRVPVLIATDVGSRGLDIPDVELVINWDLPSAWQDYVHRVGRTARNGKRGFAISFI  444

Query  620  ATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVE-PDIK  678
                  V + +          T+L+          ++  ++  +      +   +  + +
Sbjct  445  TERDIDVIHSIEDKINTKL--TQLEGLEDEDKILEKLNAVATAKRVATMALHDSQFGERQ  502

Query  679  VPVDEFDGKVTYGQKRAAGGGSYKGHVDI  707
                         +KRA+      GH   
Sbjct  503  QRNQHKQLARLKAEKRASKKAKSAGHDQQ  531


 Score = 94.4 bits (233),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 56/111 (50%), Gaps = 10/111 (9%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +FS +G+ P + +++  +   +PT IQ+ +IP +L G D++  A+TGSGKT  F++P++
Sbjct  38   TSFSSIGISPMLIRSLASLQIKVPTPIQSLTIPSVLEGRDLVGGAQTGSGKTLCFALPIL  97

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD-GLCC  111
              + + +                 +   +  +  +++  A   G+  GL C
Sbjct  98   NKLIKDM---------VGGFAVVLTPTRELGVQLHEQFVAVGEGARMGLRC  139


>sp|Q4P6N0|HAS1_USTMA ATP-dependent RNA helicase HAS1 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=HAS1 PE=3 SV=2
Length=574

 Score = 269 bits (688),  Expect = 6e-80, Method: Composition-based stats.
 Identities = 83/420 (20%), Positives = 152/420 (36%), Gaps = 64/420 (15%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNN  305
                     +  ++   G  +         + + KF P N   A+I+ P+RELA Q    
Sbjct  82   PPLMAGKDVLGAAQTGSGKTLSFLIPAIEMLHRLKFKPRNGTGAIIISPTRELALQIFGV  141

Query  306  IKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQV  364
             K+   +         +I+GG   R +   L+ GV+++V TPGRL D + +T     S +
Sbjct  142  AKELMAHHHQT---FGIIMGGANRRAEADKLQKGVNLIVATPGRLLDHLQNTKGFVFSNL  198

Query  365  RFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH  424
            + L +DEAD +L  G+ D + ++   +P         Q ++ SAT  +  V+ L+   + 
Sbjct  199  KALCIDEADRILEIGFEDEMRQIVKILP-----NDNRQSMLFSAT-QTTKVQDLARISLR  252

Query  425  -FPTWVDLKGE--DSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANS  481
              P ++++  +   S    +    V                                   
Sbjct  253  PGPLYINVHADLAASTVSRLEQGYVVCESDR-----------------------------  283

Query  482  PEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFS  541
                       +       +K++   + I+F  +                          
Sbjct  284  -----------RFLLLFTFLKKNAGKKIIVFMSSCNSVKYHSDLL---------NFIDVP  323

Query  542  CVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH  601
             + LHG +K  +R      +       L+CTDVAARG+DI  V ++I    PD+ ++Y+H
Sbjct  324  VLDLHGKQKQQKRTNTFFEYCNAPCGTLLCTDVAARGLDIPSVDWIIQFDPPDDPRDYIH  383

Query  602  RIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE  661
            R+GR  RA   G ++  +    E  +                  D    +     +L+S+
Sbjct  384  RVGRTARAGNSGKSLLFLLPT-ELGFLRFLKVAKVPLNEYTFPSDKVANVQGQLEKLISK  442


 Score = 102 bits (255),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 48/93 (52%), Gaps = 5/93 (5%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS + +     +A++ M +   T++QA  IP ++ G DVL AA+TGSGKT +F IP I++
Sbjct  52   FSILDLSEPTRKAIDAMGFKTMTEVQARCIPPLMAGKDVLGAAQTGSGKTLSFLIPAIEM  111

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
            ++      + G     T     S   +  +  +
Sbjct  112  LHRLKFKPRNG-----TGAIIISPTRELALQIF  139


>sp|Q40469|IF4A6_TOBAC Eukaryotic initiation factor 4A-6 (Fragment) 
OS=Nicotiana tabacum OX=4097 PE=2 SV=1
Length=253

 Score = 259 bits (661),  Expect = 6e-80, Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 135/305 (44%), Gaps = 60/305 (20%)

Query  341  DIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR  400
             +VVGTPGR+ D++    L    ++  VLDEAD +LS+G+ D I  +   +P       +
Sbjct  1    HVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLP------PK  54

Query  401  LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLG  460
            +QV + SAT+   +  +++ K M+ P  + +K ++   + +    V V+ +  +L     
Sbjct  55   IQVGIFSATMPP-EALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKL-----  108

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
                                              E      +   + Q++IF  T+   D
Sbjct  109  ----------------------------------ETLCDLYETLAITQSVIFVNTRRKVD  134

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             L             +G   +    HGD   + R   +  F+ G  R LI TD+ ARGID
Sbjct  135  WLTDKM---------RGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID  185

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYN  640
            +  V  VIN  LP + +NY+HRIGR GR  R G++I+ V  + E++ + +     +  YN
Sbjct  186  VQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTKDDERMLFDI-----QKFYN  240

Query  641  TRLKE  645
              ++E
Sbjct  241  VVIEE  245


>sp|A4RIF1|DBP5_PYRO7 ATP-dependent RNA helicase DBP5 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=DBP5 PE=3 SV=2
Length=477

 Score = 266 bits (680),  Expect = 8e-80, Method: Composition-based stats.
 Identities = 107/472 (23%), Positives = 180/472 (38%), Gaps = 79/472 (17%)

Query  212  LGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQH  271
            LGL   I   +          ++   L                 +A S++  G       
Sbjct  74   LGLPQGIIDGLLAMNFKKPSKIQARALPLMLSNPP------RNMIAQSQSGTGKTGAFVV  127

Query  272  SGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARD  331
            +  ++V   +  PN P+AL + PSRELA Q  + I+   ++     L     I G  +R+
Sbjct  128  TILSRVDFNQ--PNQPQALALAPSRELARQIQSVIQSIGQFC--TGLVVDAAIPGAISRE  183

Query  332  QLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLS-QGYSDFINRMHNQ  390
                     ++VVGTPG + DL+   + ++SQ++ LV+DEAD +L  QG  +   R+ N 
Sbjct  184  TGVK----ANVVVGTPGTVMDLIRRRQFDVSQLKLLVVDEADNMLDQQGLGEQCVRVKNM  239

Query  391  IPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNP  450
            +P      K +Q ++ SAT     VK  +EK       + L+ ++     +  + +    
Sbjct  240  LP------KTIQTLLFSATFPDH-VKSYAEKFAPQANQMKLRQQELTVKGISQMYMDCPS  292

Query  451  KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAI  510
                                                E  ++L   Y +  I       ++
Sbjct  293  ----------------------------------LKEKYEVLCKLYGLMTI-----GSSV  313

Query  511  IFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLI  570
            IF +T+   D +++     G              LHG  +  ER Q L+ F+ G  + LI
Sbjct  314  IFVKTRESADEIQRRMEADG---------HKVSALHGAFQGQERDQLLDDFRSGKSKVLI  364

Query  571  CTDVAARGIDIHGVPYVINVTLP--------DEKQNYVHRIGRVGRAERMGLAISLVATE  622
             T+V ARGID+  V  VIN  +P         + + Y+HRIGR GR  R+G++IS V   
Sbjct  365  TTNVLARGIDVSSVSMVINYDIPMKGPGDQSPDAETYLHRIGRTGRFGRVGVSISFVHDR  424

Query  623  KEKV-WYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQV  673
            K       +    G         +     +   ++   S  +     T  + 
Sbjct  425  KSFTALSSIAEHYGIDLIQLSPDDWDDTEVKVQDVIKSSRAKPDYAPTQEKA  476


 Score = 74.4 bits (181),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 23/128 (18%), Positives = 51/128 (40%), Gaps = 13/128 (10%)

Query  6    EMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSIPVIQI  63
            E+G+   I   +  M++  P+ IQA ++PL+L     +++  +++G+GKTGAF + ++  
Sbjct  73   ELGLPQGIIDGLLAMNFKKPSKIQARALPLMLSNPPRNMIAQSQSGTGKTGAFVVTILSR  132

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQS---REVKEWH  120
            V        +  +         +   +          +      GL   +     +    
Sbjct  133  V--------DFNQPNQPQALALAPSRELARQIQSVIQSIGQFCTGLVVDAAIPGAISRET  184

Query  121  GCRATKGL  128
            G +A   +
Sbjct  185  GVKANVVV  192


>sp|Q8K4L0|DDX54_MOUSE ATP-dependent RNA helicase DDX54 OS=Mus 
musculus OX=10090 GN=Ddx54 PE=1 SV=1
Length=874

 Score = 276 bits (706),  Expect = 8e-80, Method: Composition-based stats.
 Identities = 108/524 (21%), Positives = 187/524 (36%), Gaps = 75/524 (14%)

Query  220  PHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN---  274
               K    F +  L     K     G +      +     +    D   +    SG    
Sbjct  89   KKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTAC  148

Query  275  -----AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAA  329
                  +  + +      +ALI+ P+RELA QT+   K+  K+     L+  LI+GG   
Sbjct  149  FLLPMFERLKARSAQTGARALILSPTRELALQTMKFTKELGKFTG---LKTALILGGDKM  205

Query  330  RDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHN  389
             DQ + L    DI++ TPGRL  +     L L  V ++V DEAD L   G+++ +  +  
Sbjct  206  EDQFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIG  265

Query  390  QIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN  449
            ++P         Q ++ SATL    V+  +   +  P  + L  +  + + +    + V 
Sbjct  266  RLPGGH------QTVLFSATLPKLLVE-FARAGLTEPVLIRLDVDSKLNEQLKTSFLLVR  318

Query  450  PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA  509
              T          ++                                          DQ 
Sbjct  319  EDTKAAVLLYLLQNVVR--------------------------------------PQDQT  340

Query  510  IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL  569
            ++F  TK   + L +  + QG          SC  ++       RK NL +F       L
Sbjct  341  VVFVATKHHAEYLTELLMGQG---------VSCAHIYSALDQTARKINLAKFTHNKCSTL  391

Query  570  ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            I TD+AARG+DI  +  VIN + P + + ++HR+GRV RA R G A SLVA ++      
Sbjct  392  IVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYLLD  451

Query  630  VCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVT  689
            +    G+     R  E+           +L  + + +   +   +  ++  +        
Sbjct  452  LHLFLGRSVTLARPCEEPSVADAVGRDGVLGRVPQSV---VDDEDSSLQTAMGASLDLQG  508

Query  690  YGQKRAAGGGSYKGHVDILAPTVQELAALEKEAQTSFLHLGYLP  733
              +        Y       +P       +++  +     LG  P
Sbjct  509  LHRVANNAQQQYVRSRPAPSPES-----IKRAKELDLAELGLHP  547


 Score = 98.7 bits (244),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 26/94 (28%), Positives = 45/94 (48%), Gaps = 7/94 (7%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F  MG+   + + + +  + +PT IQ ++IP+IL G DV+  A TGSGKT  F +P+ + 
Sbjct  97   FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER  156

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYD  97
            +    +  Q G +         S   +  +    
Sbjct  157  L--KARSAQTGAR-----ALILSPTRELALQTMK  183


>sp|Q15N18|RHLB_PSEA6 ATP-dependent RNA helicase RhlB OS=Pseudoalteromonas 
atlantica (strain T6c / ATCC BAA-1087) OX=3042615 
GN=rhlB PE=3 SV=1
Length=421

 Score = 264 bits (675),  Expect = 9e-80, Method: Composition-based stats.
 Identities = 104/440 (24%), Positives = 173/440 (39%), Gaps = 66/440 (15%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
              DL +  ++   +          ++   L              +     ++   G  + 
Sbjct  11   FADLPINEQVVKALSAANFSHCTPIQALSLPPLL--------EGNDIAGQAQTGTGKTIA  62

Query  269  SQHSGNA-QVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
               +     ++  +     P+A+I+ P+RELA Q  N+ +   ++     L   LI GG 
Sbjct  63   FLVATFHYLLSNPQPTKKQPRAIIMAPTRELAVQIFNDAELLSQHTG---LSLGLIYGGE  119

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM  387
              + Q   LE GVDI++GT GR+ D       +L+ ++  VLDEAD +   G+   I  +
Sbjct  120  GYQSQREKLEEGVDIIIGTTGRIIDYYKQNIFSLAGIQVAVLDEADRMFDLGFIKDIRYL  179

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
             N++P+ T        ++ SATL S+ V++L+ + M  PT V ++ E      +      
Sbjct  180  FNRMPKPT----ERLSMLFSATL-SYRVQELAYEHMDNPTHVQVEPERKTGTRIK-----  229

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
                                               E         K    +  ++E   D
Sbjct  230  -----------------------------------EELFYPSDEDKMALLLSLMEEEWPD  254

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
            +AI+F  TK  C+ +  +    G              L GD   ++R + LE F  G + 
Sbjct  255  KAIVFANTKHSCEKVADWLQADG---------HRVGLLSGDVPQNKRLKILEDFTSGKLD  305

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             L+ TDVAARG+ I  V +V N  LPD+ ++YVHRIGR GRA + G +IS          
Sbjct  306  ILVATDVAARGLHIPMVSHVFNYDLPDDAEDYVHRIGRTGRAGQSGSSISFACERYALNL  365

Query  628  YHVCSSRGKGCYNTRLKEDG  647
              + +        T  + D 
Sbjct  366  PAIETYIEHAIPVTEYQADA  385


 Score = 94.4 bits (233),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 56/353 (16%), Positives = 119/353 (34%), Gaps = 59/353 (17%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F+++ +  ++ +A+   ++   T IQA S+P +L G D+   A+TG+GKT AF +   
Sbjct  9    THFADLPINEQVVKALSAANFSHCTPIQALSLPPLLEGNDIAGQAQTGTGKTIAFLVATF  68

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHG  121
              +     + Q  KK    I    +   +  +  ++                 E+   H 
Sbjct  69   HYLLS---NPQPTKKQPRAI--IMAPTRELAVQIFN---------------DAELLSQHT  108

Query  122  CRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDN  181
              +   +  G+               G+ + +  L+ G D            +  +  D 
Sbjct  109  GLSLGLIYGGE---------------GYQSQREKLEEGVDII--------IGTTGRIIDY  145

Query  182  YGEEFTMHDTIGCYLDIDKGHVKFSKNG-KDLGLAFE---IPPHMKNQALFPACVLKNAE  237
            Y +       I   + +D+    F     KD+   F     P    +         +  E
Sbjct  146  YKQNIFSLAGIQVAV-LDEADRMFDLGFIKDIRYLFNRMPKPTERLSMLFSATLSYRVQE  204

Query  238  LKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRE  297
            L +   +       +      ++  +     S     A +          KA++   ++ 
Sbjct  205  LAYEHMDNPTHVQVEPERKTGTRIKEELFYPSDEDKMALLLSLMEEEWPDKAIVFANTK-  263

Query  298  LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGT  346
                  ++ ++   ++     R  L+ G V    +L +LE+     +DI+V T
Sbjct  264  ------HSCEKVADWLQADGHRVGLLSGDVPQNKRLKILEDFTSGKLDILVAT  310


>sp|Q1EA54|HAS1_COCIM ATP-dependent RNA helicase HAS1 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=HAS1 PE=3 SV=1
Length=604

 Score = 270 bits (689),  Expect = 9e-80, Method: Composition-based stats.
 Identities = 83/429 (19%), Positives = 158/429 (37%), Gaps = 72/429 (17%)

Query  212  LGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQH  271
            L L+ +    ++         ++   +                 +  +K   G  +    
Sbjct  129  LNLSEKTLKAIQEMGFETMTEIQRRGIP--------PLMAGRDVLGAAKTGSGKTLSFLI  180

Query  272  SGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
                 ++  +F P N    ++V P+RELA Q     ++   +         ++IGG   R
Sbjct  181  PAVEMLSALRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTY---GIVIGGANRR  237

Query  331  DQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHN  389
             +   L  GV++++ TPGRL D + +T       ++ LV+DEAD +L  G+ D + ++  
Sbjct  238  AEAEKLTKGVNLLIATPGRLLDHLQNTDGFVFKNLKALVIDEADRILEVGFEDEMRQIVK  297

Query  390  QIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH-FPTWVDLK--GEDSVPDTVHHVVV  446
             +P      +  Q ++ SAT  +  V+ L+   +   P ++++    E S  + +    V
Sbjct  298  ILP-----SEDRQTMLFSAT-QTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYV  351

Query  447  PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM  506
              +                                           +       +K +  
Sbjct  352  ICDSDK----------------------------------------RFLLLFSFLKRNLK  371

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
             + I+F  +        +                  + LHG +K  +R      F     
Sbjct  372  KKIIVFFSSCNCVKYHAELL---------NYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQ  422

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR-AERMGLAISLVATEKEK  625
              LICTDVAARG+DI  V ++I    PD+ ++Y+HR+GR  R A   G ++  +   +  
Sbjct  423  GTLICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGANGKGRSLMFLQPSEVG  482

Query  626  VWYHVCSSR  634
               H+  +R
Sbjct  483  FLKHLKDAR  491


 Score = 103 bits (257),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 49/93 (53%), Gaps = 5/93 (5%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+E+ +  +  +A++EM +   T+IQ   IP ++ G DVL AA+TGSGKT +F IP +++
Sbjct  126  FTELNLSEKTLKAIQEMGFETMTEIQRRGIPPLMAGRDVLGAAKTGSGKTLSFLIPAVEM  185

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
            +       + G     T     S   +  +  +
Sbjct  186  LSALRFKPRNG-----TGVIVVSPTRELALQIF  213


>sp|Q4HY71|DBP5_GIBZE ATP-dependent RNA helicase DBP5 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=DBP5 PE=3 SV=1
Length=488

 Score = 266 bits (680),  Expect = 1e-79, Method: Composition-based stats.
 Identities = 107/473 (23%), Positives = 188/473 (40%), Gaps = 79/473 (17%)

Query  210  KDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKS  269
            +DLGL  ++   + +        ++   L     +           +A S++  G     
Sbjct  78   QDLGLREDLLKGLLSLNFLKPSKVQGKSLPLMLSDPP------RNMLAQSQSGTGKTAAF  131

Query  270  QHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAA  329
              +  ++V  +K  P+ P+AL + PSRELA Q    I    ++++N   +    I GV  
Sbjct  132  VTAILSRVDFSK--PDQPQALALAPSRELARQIEGVINAIGRFVENK--KVAAAIPGVLP  187

Query  330  RDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLS-QGYSDFINRMH  388
            R +         ++VGTPG + D++   +L++SQ+R LVLDEAD +L  QG  D   ++ 
Sbjct  188  RGE----PVRASVIVGTPGTVMDIIRRRQLDISQLRVLVLDEADNMLDQQGLGDQCLKVK  243

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
            N +P      K +QV++ SAT    +V K + K       + L+  +     +  + +  
Sbjct  244  NMLP------KEIQVLLFSATFP-ENVMKYAGKFAPNAHSLKLQRSELTVKGISQMFIDC  296

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
                 +                                    IL   Y +  I      Q
Sbjct  297  PDDNMK----------------------------------YDILCKLYGLMTI-----GQ  317

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
            ++IF +T+     +E+  +  G              LH      ER   L +F++G+ + 
Sbjct  318  SVIFVKTRDSASEIERRMVADG---------HKVSALHAAFDGAERDNLLTKFRQGENKV  368

Query  569  LICTDVAARGIDIHGVPYVINVTLP--------DEKQNYVHRIGRVGRAERMGLAISLVA  620
            LI T+V ARGID+  V  VIN  +P         + + Y+HRIGR GR  R+G++IS V 
Sbjct  369  LITTNVLARGIDVSSVSMVINYDIPMKGRGDTEPDAETYLHRIGRTGRFGRVGVSISFVY  428

Query  621  TEKE-KVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQ  672
             +K       +    G        ++         E+   +  +     + ++
Sbjct  429  DKKSFDALSKIAEMYGIDLVKLDTEDWDEAEERVKEVIKKNRAQASYAPSATE  481


 Score = 75.6 bits (184),  Expect = 6e-13, Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 44/75 (59%), Gaps = 2/75 (3%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSIP  59
              + ++G+  ++ + +  +++L P+ +Q +S+PL+L     ++L  +++G+GKT AF   
Sbjct  75   TTWQDLGLREDLLKGLLSLNFLKPSKVQGKSLPLMLSDPPRNMLAQSQSGTGKTAAFVTA  134

Query  60   VIQIVYETLKDQQEG  74
            ++  V  +  DQ + 
Sbjct  135  ILSRVDFSKPDQPQA  149


>sp|Q818H2|CSHB_BACCR DEAD-box ATP-dependent RNA helicase CshB 
OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 
/ JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) 
OX=226900 GN=cshB PE=2 SV=1
Length=436

 Score = 265 bits (676),  Expect = 1e-79, Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 167/392 (43%), Gaps = 60/392 (15%)

Query  256  VALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDN  315
            +  S+   G           ++  ++      + +I  P+RELA+Q    I +  K+   
Sbjct  45   IGQSQTGSGKTHAYLLPTLNRINASRE---EVQLVITAPTRELAQQIYEEIVKLTKFCAE  101

Query  316  PK-LRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADG  374
             + +    +IGG   +  +  L+    IVVGTPGR+ DLV    L + +   +++DEAD 
Sbjct  102  DQMITARCLIGGTDKQRSIEKLKKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADL  161

Query  375  LLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE  434
            +L  G+   ++++  ++P      K LQ++V SAT+    +K   +K M  P  + +  +
Sbjct  162  MLDMGFIHDVDKIAARMP------KNLQMLVFSATIP-QKLKPFLKKYMENPEHIHINPK  214

Query  435  DSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG  494
                  + H +VP   +                                         K 
Sbjct  215  QVAAGNIEHYLVPSKHRN----------------------------------------KI  234

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
            +   + + + K   A++F  TK   D +    +++G              +HGD  P +R
Sbjct  235  DLVHKMLLQFKPYLAVVFTNTKKMADQVADGLMERG---------LKVGRIHGDLSPRDR  285

Query  555  KQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGL  614
            K+ +++ +  + ++++ TD+AARGIDI G+ +VIN   P +   +VHR+ R  RA   G+
Sbjct  286  KKMMKQIRDLEFQYIVATDLAARGIDIQGISHVINYQPPSDLDFFVHRVARTARAGHSGI  345

Query  615  AISLVATEKEKVWYHVCSSRGKGCYNTRLKED  646
            A+++     E+    +   R     +  L+ D
Sbjct  346  AVTIYDPANEEALDSLEKQRHIEFKHVDLRGD  377


 Score = 91.0 bits (224),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 62/374 (17%), Positives = 136/374 (36%), Gaps = 67/374 (18%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F++    P +  AV E+ +  PT IQ +  P++  G  V+  ++TGSGKT A+ +P + 
Sbjct  5    TFTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLN  64

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGC  122
             +  + ++ Q             +   +     Y+            C + + +      
Sbjct  65   RINASREEVQL---------VITAPTRELAQQIYEEIVKL----TKFCAEDQMITARCLI  111

Query  123  RAT---KGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQF  179
              T   + + K K    +     G  +          DL  ++  F         H    
Sbjct  112  GGTDKQRSIEKLKKQPHIVVGTPGRIK----------DLVEEQALFV--------HKANT  153

Query  180  DNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELK  239
                E   M D +G   D+D              +A  +P +++   +F A + +  +  
Sbjct  154  IIVDEADLMLD-MGFIHDVD-------------KIAARMPKNLQ-MLVFSATIPQKLKPF  198

Query  240  FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPK-ALIVEPSREL  298
                 E  +    +     +   + Y+V S+H     +     L   P  A++   ++++
Sbjct  199  LKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVHKMLLQFKPYLAVVFTNTKKM  258

Query  299  AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDI----VVGTPGRLDDLV  354
            A+Q  + + +         L+   I G ++ RD+  +++   D+    +V T     DL 
Sbjct  259  ADQVADGLME-------RGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVAT-----DLA  306

Query  355  STGKLNLSQVRFLV  368
            + G +++  +  ++
Sbjct  307  ARG-IDIQGISHVI  319


>sp|P0CR02|DBP8_CRYNJ ATP-dependent RNA helicase DBP8 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=DBP8 PE=3 SV=1
Length=619

 Score = 270 bits (690),  Expect = 1e-79, Method: Composition-based stats.
 Identities = 96/452 (21%), Positives = 165/452 (37%), Gaps = 35/452 (8%)

Query  212  LGLAFEIPPHMKNQALFPACVLKNAELKF--NFGEEEFKFPPKDGFVALSKAPDGYIVKS  269
                            F +  L +  +    +   ++           +    D      
Sbjct  138  QPNGLASASKPSADVTFESLGLSHPLITALASINIKKPTEIQAACVEPILSGRDCIGGAK  197

Query  270  QHSGNAQVTQTKFL------PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLI  323
              SG         +      P    A+++ P+RELA Q         K +    L    I
Sbjct  198  TGSGKTMAFALPIVERIARDPFGVWAVVLTPTRELAYQLSEQFLVIGKPLG---LTTATI  254

Query  324  IGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKL---NLSQVRFLVLDEADGLLSQGY  380
            +GG+    Q   LE    I+V TPGRL DL+ +G +    LS+VR LVLDEAD +L+  +
Sbjct  255  VGGMDMMKQAQELEARPHIIVATPGRLCDLLRSGGVGPGKLSRVRTLVLDEADRMLTPSF  314

Query  381  SDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEK----IMHFPTWVDLKGEDS  436
            +  +  + +QIP       + Q  + +AT+ S  + +L+ K        P    +  +  
Sbjct  315  APELAYLFSQIPA------KRQTCLFTATV-SEAIMELANKEPPAGKQRPFVYRVASDTL  367

Query  437  VPDTVHHVVVPVNPKT-DRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGE  495
                +    + +  +  D     + ++ +   DV  + + +         +   K  K  
Sbjct  368  TVSNLKQKYLFIPSQIRDPYLLYILQNPLEDIDVALRVDPKKAKAREREAALGKKGKKPR  427

Query  496  YAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERK  555
             A        +   +IF +                            V LH      +R 
Sbjct  428  QAKEEEDAPSVPSTVIFTQRCATA---------HLLHLLLNSLDIPSVPLHSHLTQPQRL  478

Query  556  QNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLA  615
             +L RF+  +V  L+ TDV +RG+DI  V  VIN   P    +YVHR+GR  RA R G+A
Sbjct  479  LSLARFRAHEVPVLVTTDVGSRGLDIPEVAMVINWDCPRRSDDYVHRVGRTARAGRGGVA  538

Query  616  ISLVATEKEKVWYHVCSSRGKGCYNTRLKEDG  647
            ++++     ++   +           +L ED 
Sbjct  539  VTIITERDTELVKIIEDEVNVRLEELKLDEDK  570


 Score = 91.3 bits (225),  Expect = 9e-18, Method: Composition-based stats.
 Identities = 22/96 (23%), Positives = 43/96 (45%), Gaps = 9/96 (9%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F  +G+   +  A+  ++   PT+IQA  +  IL G D +  A+TGSGKT AF++P+++
Sbjct  153  TFESLGLSHPLITALASINIKKPTEIQAACVEPILSGRDCIGGAKTGSGKTMAFALPIVE  212

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDR  98
             +          +          +   +      ++
Sbjct  213  RI---------ARDPFGVWAVVLTPTRELAYQLSEQ  239


>sp|P0CQ87|DBP5_CRYNB ATP-dependent RNA helicase DBP5 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=DBP5 PE=3 SV=1
Length=546

 Score = 268 bits (684),  Expect = 1e-79, Method: Composition-based stats.
 Identities = 123/566 (22%), Positives = 212/566 (37%), Gaps = 113/566 (20%)

Query  148  GWS--TMQASLDLGTDKFGFGFGGTGKKSHNKQFD-NYGEEFTMHDTIGCYLDIDKGHVK  204
            GW      A  D G    G   GG+G  +++  FD                + +      
Sbjct  62   GWGEPAPSAPADNGWADAGASNGGSGANNNDGWFDAPVPPSSQPPKKEASDIQLQDDTEG  121

Query  205  FSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFG--------EEEFKFPPKDGFV  256
               N   + +         N  L+     K   L  +          ++  K   K   +
Sbjct  122  LITNTFQVEVKLADLQGDPNSPLYSVQSFKELNLHEDLMKGIIAAGFQKPSKIQEKALPL  181

Query  257  ALSKAPDGYIVKSQHSGNA-------QVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQF  309
             LS  P   I +SQ             +++       P+A+ + PSRELA Q    + Q 
Sbjct  182  LLSNPPRNLIGQSQSGTGKTAAFTLNMLSRVDPTIPTPQAICIAPSRELARQIQEVVDQI  241

Query  310  KKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGK--LNLSQVRFL  367
             ++    ++   L I G  +R+  S ++    I++GTPG L D++  G   L+   +R L
Sbjct  242  GQF---TQVGTFLAIPGSWSRN--SRIDK--QILIGTPGTLVDMLMRGSRILDPRMIRVL  294

Query  368  VLDEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFP  426
            VLDEAD L+  QG  +   R+   +P        +Q ++ SAT +  DV++ +++     
Sbjct  295  VLDEADELIAQQGLGEQTFRIKQLLP------PNVQNVLFSATFND-DVQEFADRFAPEA  347

Query  427  TWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWS  486
              + L+ ED   D +  + +  + +                                   
Sbjct  348  NKIFLRKEDITVDAIRQLYLECDSEDQ---------------------------------  374

Query  487  EAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLH  546
                  K E          + Q+I+FC+ K+  D++ +  I +G          +   LH
Sbjct  375  ------KYEALSALYDCLVIGQSIVFCKRKVTADHIAERLISEG---------HAVASLH  419

Query  547  GDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD--------EKQN  598
            GD+   ER   L+ F+ G+ + LI T+V ARGIDI  V  V+N  +PD        + + 
Sbjct  420  GDKLSQERDAILDGFRNGETKVLITTNVIARGIDIPAVNMVVNYDVPDLGPGGNGPDIET  479

Query  599  YVHRIGRVGRAERMGLAISLVATEKEKV-WYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQ  657
            Y+HRIGR GR  R G ++      + K     + ++ GK                     
Sbjct  480  YIHRIGRTGRFGRKGCSVIFTHDYRSKSDVERIMNTLGKP--------------------  519

Query  658  LLSEIEEHLNCTISQVEPDIKVPVDE  683
             + +I+      I Q+E  +K+ +  
Sbjct  520  -MKKIDARSTTDIEQLEKALKLAMKG  544


 Score = 86.3 bits (212),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 17/74 (23%), Positives = 43/74 (58%), Gaps = 2/74 (3%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            + +F E+ +  ++ + +    +  P+ IQ +++PL+L     +++  +++G+GKT AF++
Sbjct  147  VQSFKELNLHEDLMKGIIAAGFQKPSKIQEKALPLLLSNPPRNLIGQSQSGTGKTAAFTL  206

Query  59   PVIQIVYETLKDQQ  72
             ++  V  T+   Q
Sbjct  207  NMLSRVDPTIPTPQ  220


>sp|Q59ZH9|MAK5_CANAL ATP-dependent RNA helicase MAK5 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=MAK5 
PE=3 SV=2
Length=782

 Score = 274 bits (700),  Expect = 1e-79, Method: Composition-based stats.
 Identities = 104/472 (22%), Positives = 175/472 (37%), Gaps = 60/472 (13%)

Query  240  FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP---------------  284
            +   + +FK P       +  A  G  V  + +  +  T    +P               
Sbjct  210  YGLSQLDFKKPTPIQKETIPIALSGKDVIGKATTGSGKTLAYGIPILEKYIQSLNLIKQN  269

Query  285  ------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
                  N P  +I  P+RELA Q ++++ +  KY        + I GG++ + Q  +L +
Sbjct  270  NKDKKINHPTGIIFAPTRELAHQVVDHLNKLAKYSPLSTRGIVSITGGLSIQKQQRLLRH  329

Query  339  GVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQI----  391
            G  I+V TPGR+ +LV         L+ +  +VLDEAD LL  G+ D   ++        
Sbjct  330  GPGIIVATPGRMLELVQGDSELAKRLASIDIIVLDEADRLLQDGHFDEFEKILELFGKNR  389

Query  392  PQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPK  451
            P+  S   + Q +V SAT      +KL            L G D +              
Sbjct  390  PKSKSIEWKWQTLVFSATFSRDLFRKLDRH--QKGKSSSLMGNDEIV-------------  434

Query  452  TDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAII  511
               L E+L     +   V A           E   E     +  Y    +  +K    ++
Sbjct  435  -QLLNEKLKFKDKKPTLVDANPKEIVSGQITEALVECGPTERDLYLYYFLLMYK-GSTLV  492

Query  512  FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK----KGDVR  567
            F  +      L                      +H      +R + LE+FK    K +V 
Sbjct  493  FANSIDSVKRLVPLLNNL---------NIPAFSIHSSMIQKQRLRALEKFKEASQKNEVA  543

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             L+ +DVAARG+DI  + +V++  LP     Y+HR GR  RA + G+++   + ++    
Sbjct  544  VLVASDVAARGLDIPNIDHVVHYHLPRSADVYIHRSGRTARAGKEGVSVMFCSPQEASGP  603

Query  628  YHVCSSR--GKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDI  677
                     G     +RL       +   EM L+S+I+  +  +    +  I
Sbjct  604  LRKLRRLVAGNSNKESRLNMHNDVKLLPIEMDLVSQIKPRVEISSKLADASI  655


 Score = 99.0 bits (245),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 61/143 (43%), Gaps = 19/143 (13%)

Query  6    EMG--VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            ++G  +       + ++D+  PT IQ E+IP+ L G DV+  A TGSGKT A+ IP+++ 
Sbjct  199  DLGSSISAYTLYGLSQLDFKKPTPIQKETIPIALSGKDVIGKATTGSGKTLAYGIPILEK  258

Query  64   VYETL---KDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS-----------DGL  109
              ++L   K   + KK         +   +      D  +  A  S            GL
Sbjct  259  YIQSLNLIKQNNKDKKINHPTGIIFAPTRELAHQVVDHLNKLAKYSPLSTRGIVSITGGL  318

Query  110  CCQSREVKEWHG---CRATKGLM  129
              Q ++    HG     AT G M
Sbjct  319  SIQKQQRLLRHGPGIIVATPGRM  341


>sp|A5E2Z9|HAS1_LODEL ATP-dependent RNA helicase HAS1 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=HAS1 PE=3 SV=1
Length=559

 Score = 268 bits (685),  Expect = 1e-79, Method: Composition-based stats.
 Identities = 82/428 (19%), Positives = 158/428 (37%), Gaps = 65/428 (15%)

Query  213  GLAFEIPPHMKNQALFPACV-LKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQH  271
            G+ +       ++    A   +   ++     +           +  +K   G  +    
Sbjct  90   GVNYSFEKADFSEPTMKAIKEMGFQKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLL  149

Query  272  SGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
                 +   K  P N    +I+ P+RELA Q     +Q  +Y         ++IGG   R
Sbjct  150  PAVELLYSLKIKPRNGTAVIIITPTRELALQIFGVARQLMEYHSQT---CGIVIGGADRR  206

Query  331  DQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHN  389
             + + L  GV+++V TPGRL D + +T       ++ LV+DEAD +L  G+ + + ++  
Sbjct  207  QEATKLAKGVNLLVATPGRLLDHLKNTQGFVFLNLKALVIDEADRILEIGFEEEMKQIIK  266

Query  390  QIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH-FPTWVDLKGED--SVPDTVHHVVV  446
             +P      +  Q ++ SAT  +  V+ L+   +   P ++++  E   S  D +    V
Sbjct  267  ILP-----NEDRQTMLFSAT-QTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYV  320

Query  447  PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM  506
              +                                           +       +K +  
Sbjct  321  VCDSDK----------------------------------------RFLLLFSFLKRNIK  340

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
             + I+F  +        +                  + LHG +K  +R      F     
Sbjct  341  KKIIVFLSSCNSVKFYSELL---------NYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQ  391

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER-MGLAISLVATEKEK  625
              L+CTDVAARG+DI  V ++I    PD+ ++Y+HR+GR  R     G ++  +   +  
Sbjct  392  GILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTDGKGKSLMFLTPSELG  451

Query  626  VWYHVCSS  633
               ++ ++
Sbjct  452  FLRYLKAA  459


 Score = 102 bits (255),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 28/94 (30%), Positives = 49/94 (52%), Gaps = 5/94 (5%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F +        +A++EM +   T +QA++IP +L G DVL AA+TGSGKT AF +P ++
Sbjct  94   SFEKADFSEPTMKAIKEMGFQKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLLPAVE  153

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
            ++Y      + G     T     +   +  +  +
Sbjct  154  LLYSLKIKPRNG-----TAVIIITPTRELALQIF  182


>sp|Q3B8Q1|DDX21_RAT Nucleolar RNA helicase 2 OS=Rattus norvegicus 
OX=10116 GN=Ddx21 PE=2 SV=1
Length=782

 Score = 274 bits (700),  Expect = 1e-79, Method: Composition-based stats.
 Identities = 113/447 (25%), Positives = 182/447 (41%), Gaps = 71/447 (16%)

Query  209  GKDLGLAFEIPPHMKNQAL--FPAC-----VLKNAELKFNFGEEEFKF---PPKDGFVAL  258
            G++     EIP   K  A   FP       +LK   + F F  +   F         +A 
Sbjct  166  GEESETEKEIPVEQKEGAFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQ  225

Query  259  SKAPDGYIVKSQHSGNAQVT---QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDN  315
            ++   G           ++    Q +    AP+ L++ P+RELA Q   +     K    
Sbjct  226  ARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITK----  281

Query  316  PKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGL  375
             KL      GG     Q+  + +G+DI+VGTPGR+ D +  GKL+L++++ +VLDE D +
Sbjct  282  -KLSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQM  340

Query  376  LSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF-PTWVDLKGE  434
            L  G++D +  +   +          Q ++ SAT   + V  +++K M      VDL G+
Sbjct  341  LDMGFADQVEEIL-CVAYKKDSEDNPQTLLFSATCPHW-VFNVAKKYMKSTYEQVDLIGK  398

Query  435  DS--VPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKIL  492
             +     TV H+ +  +                                   W+E   ++
Sbjct  399  KTQKAAITVEHLAIKCH-----------------------------------WTERAAVI  423

Query  493  KGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPH  552
                 V +  +    + IIFC TK D   L Q    +               LHGD    
Sbjct  424  GDVIRVYSGHQ---GRTIIFCETKKDAQELSQNTCIKQ----------DAQSLHGDIPQK  470

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM  612
            +R+  L+ F+ G+   L+ T+VAARG+DI  V  V+    P + ++Y+HR GR GRA R 
Sbjct  471  QREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRT  530

Query  613  GLAISLVATEKEKVWYHVCSSRGKGCY  639
            G+ I     ++E     V    G    
Sbjct  531  GVCICFYQHKEEYQLAQVEQKAGIKFK  557


 Score = 74.8 bits (182),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 24/90 (27%), Positives = 43/90 (48%), Gaps = 3/90 (3%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            AFS   +  E  + ++         IQA++   +  G D++  A TG+GKT +F+IP+I+
Sbjct  183  AFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIE  242

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQ  92
             +   L   QE K+G+       +   +  
Sbjct  243  KLQGGL---QERKRGRAPQVLVLAPTRELA  269


>sp|Q6BV58|MAK5_DEBHA ATP-dependent RNA helicase MAK5 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=MAK5 PE=3 SV=1
Length=790

 Score = 274 bits (700),  Expect = 1e-79, Method: Composition-based stats.
 Identities = 95/418 (23%), Positives = 167/418 (40%), Gaps = 38/418 (9%)

Query  275  AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLS  334
            A+  Q+K + N P  +I  P+RELA Q ++++ +  K+    +   + I GG++ + Q  
Sbjct  266  AKANQSKKVINPPTGIIFAPTRELAHQVVDHLNRIAKFTPLSQHGIVSITGGLSIQKQER  325

Query  335  VLENGVDIVVGTPGRLDDLVSTGKL---NLSQVRFLVLDEADGLLSQGYSDFINRMHNQI  391
            +L +G  IVV TPGR  +L+         LS    +VLDEAD LL  G+ D   ++    
Sbjct  326  LLSHGPGIVVATPGRFLELLQKDMALVQRLSCTDIVVLDEADRLLQDGHFDEFVKILELF  385

Query  392  PQVTSDGKR-----LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVV  446
             +      +      Q +V SAT       KL + +       ++       D +  +  
Sbjct  386  GKHRPRDNKELEWKWQTLVFSATFSRDLFGKLDKHLKSNKNKEEMGSSLIDNDEILQL--  443

Query  447  PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM  506
                    L ++L     +   V A           E   E     +  Y    +  +  
Sbjct  444  --------LNDKLKFKDSKPTLVDANPKEMVAGQITEALVECGPTERDLYLYYFLLLYP-  494

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
               ++F  +      L  +             +     +H      +R + LERFK+   
Sbjct  495  GSTLVFANSIDSVKRLAPFLNNL---------KVPTFSIHSSMIQKQRLRTLERFKEASS  545

Query  567  R----FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
            +     LI +DVAARG+DI  + +V +  LP     Y+HR GR GRA + G++I   + +
Sbjct  546  KNSTAVLIASDVAARGLDIPNIDHVAHYHLPRSADVYIHRSGRTGRAGKEGVSIMFCSPQ  605

Query  623  KE----KVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPD  676
            +     +    + ++  K    TRL       +   EM L+S+I+  +       + +
Sbjct  606  ESSGPLRKLRKLVANNTKK--RTRLNVHNDVKLLPLEMDLVSQIKPRVTLASKLADAE  661


 Score = 102 bits (255),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 86/235 (37%), Gaps = 29/235 (12%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            + ++ +       +  +++  PT IQ  +IPL + G DV+  A TGSGKT A+ IP+++ 
Sbjct  201  WDDLSLSSFTLNGLSALEYEKPTAIQKRTIPLAIEGKDVIGKAITGSGKTLAYGIPILER  260

Query  64   VYETL-KDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI-----------GSDGLCC  111
              + + K  Q  K          +   +      D  +  A             + GL  
Sbjct  261  HLQKMAKANQSKKVINPPTGIIFAPTRELAHQVVDHLNRIAKFTPLSQHGIVSITGGLSI  320

Query  112  QSREVKEWHG---CRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGT---DKFGF  165
            Q +E    HG     AT G        +++   +  C       +A   L     D+F  
Sbjct  321  QKQERLLSHGPGIVVATPGRFLELLQKDMALVQRLSCTDIVVLDEADRLLQDGHFDEFVK  380

Query  166  GFGGTGKK--SHNKQFDNYGEEFT-----MHDTIGCYLDIDKGHVKFSKNGKDLG  213
                 GK     NK+ +   +          D  G        H+K +KN +++G
Sbjct  381  ILELFGKHRPRDNKELEWKWQTLVFSATFSRDLFGKL----DKHLKSNKNKEEMG  431


>sp|Q5BBY1|HAS1_EMENI ATP-dependent RNA helicase has1 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=has1 PE=3 SV=1
Length=609

 Score = 269 bits (688),  Expect = 1e-79, Method: Composition-based stats.
 Identities = 85/434 (20%), Positives = 159/434 (37%), Gaps = 72/434 (17%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K   +LGL+ +    +K         ++   +                 +  +K   G  
Sbjct  128  KKFTELGLSEKTLQGIKEMGFETMTEIQQRTIPPLLA--------GRDVLGAAKTGSGKT  179

Query  267  VKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
            +         ++  +F P N    ++V P+RELA Q     ++             ++IG
Sbjct  180  LAFLIPAIEMLSALRFKPRNGTGVIVVSPTRELALQIFGVARELLTAHSQTY---GIVIG  236

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            G   R +   L  GV++++ TPGRL D + +T       ++ LV+DEAD +L  G+ D +
Sbjct  237  GANRRAEAEKLTKGVNLLIATPGRLLDHLQNTPGFVFKNLKTLVIDEADRILEVGFEDEM  296

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH-FPTWVDLK--GEDSVPDTV  441
             ++   +P      +  Q ++ SAT  +  V+ L+   +   P ++++    E S  + +
Sbjct  297  RQIIKILP-----NEDRQTMLFSAT-QTTKVEDLARISLRPGPLYINVDHRKEHSTVEGL  350

Query  442  HHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI  501
                V                                              +       +
Sbjct  351  EQGYVICEADK----------------------------------------RFLLLFSFL  370

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
            K +   + I+F  +        +                  + LHG +K  +R      F
Sbjct  371  KRNLKKKIIVFFSSCNCVKYHAELL---------NYIDLPVLDLHGKQKQQKRTNTFFEF  421

Query  562  KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR-AERMGLAISLVA  620
                   LICTDVAARG+DI  V ++I    PD+ ++Y+HR+GR  R A   G ++  + 
Sbjct  422  CNAKQGVLICTDVAARGLDIPAVDWIIQFDPPDDTRDYIHRVGRTARGANGRGRSLMFLQ  481

Query  621  TEKEKVWYHVCSSR  634
              +     ++  +R
Sbjct  482  PSEVGFLKYLKEAR  495


 Score = 109 bits (272),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 32/95 (34%), Positives = 50/95 (53%), Gaps = 5/95 (5%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F+E+G+  +  Q ++EM +   T+IQ  +IP +L G DVL AA+TGSGKT AF IP I
Sbjct  128  KKFTELGLSEKTLQGIKEMGFETMTEIQQRTIPPLLAGRDVLGAAKTGSGKTLAFLIPAI  187

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
            +++       + G     T     S   +  +  +
Sbjct  188  EMLSALRFKPRNG-----TGVIVVSPTRELALQIF  217


>sp|P0CQ86|DBP5_CRYNJ ATP-dependent RNA helicase DBP5 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=DBP5 PE=3 SV=1
Length=546

 Score = 267 bits (683),  Expect = 2e-79, Method: Composition-based stats.
 Identities = 124/566 (22%), Positives = 212/566 (37%), Gaps = 113/566 (20%)

Query  148  GWS--TMQASLDLGTDKFGFGFGGTGKKSHNKQFD-NYGEEFTMHDTIGCYLDIDKGHVK  204
            GW      A  D G    G   GG+G  +++  FD                + +      
Sbjct  62   GWGEPAPSAPADNGWADAGASNGGSGANNNDGWFDAPVPPSSQPPKKEASDIQLQDDTEG  121

Query  205  FSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFG--------EEEFKFPPKDGFV  256
               N   + +         N  L+     K   L  +          ++  K   K   +
Sbjct  122  LITNTFQVEVKLADLQGDPNSPLYSVQSFKELNLHEDLMKGIIAAGFQKPSKIQEKALPL  181

Query  257  ALSKAPDGYIVKSQHSGNA-------QVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQF  309
             LS  P   I +SQ             +++       P+A+ + PSRELA Q    I Q 
Sbjct  182  LLSNPPRNLIGQSQSGTGKTAAFTLNMLSRVDPTIPTPQAICIAPSRELARQIQEVIDQI  241

Query  310  KKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGK--LNLSQVRFL  367
             ++    ++   L I G  +R+  S ++    I++GTPG L D++  G   L+   +R L
Sbjct  242  GQF---TQVGTFLAIPGSWSRN--SRIDK--QILIGTPGTLVDMLMRGSRILDPRMIRVL  294

Query  368  VLDEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFP  426
            VLDEAD L+  QG  +   R+   +P        +Q ++ SAT +  DV++ +++     
Sbjct  295  VLDEADELIAQQGLGEQTFRIKQLLP------PNVQNVLFSATFND-DVQEFADRFAPEA  347

Query  427  TWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWS  486
              + L+ ED   D +  + +  + +                                   
Sbjct  348  NKIFLRKEDITVDAIRQLYLECDSEDQ---------------------------------  374

Query  487  EAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLH  546
                  K E          + Q+I+FC+ K+  D++ +  I +G          +   LH
Sbjct  375  ------KYEALSALYDCLVIGQSIVFCKRKVTADHIAERLISEG---------HAVASLH  419

Query  547  GDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD--------EKQN  598
            GD+   ER   L+ F+ G+ + LI T+V ARGIDI  V  V+N  +PD        + + 
Sbjct  420  GDKLSQERDAILDGFRNGETKVLITTNVIARGIDIPAVNMVVNYDVPDLGPGGNGPDIET  479

Query  599  YVHRIGRVGRAERMGLAISLVATEKEKV-WYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQ  657
            Y+HRIGR GR  R G ++      + K     + ++ GK                     
Sbjct  480  YIHRIGRTGRFGRKGCSVIFTHDYRSKSDVERIMNTLGKP--------------------  519

Query  658  LLSEIEEHLNCTISQVEPDIKVPVDE  683
             + +I+      I Q+E  +K+ +  
Sbjct  520  -MKKIDARSTTDIEQLEKALKLAMKG  544


 Score = 86.3 bits (212),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 17/74 (23%), Positives = 43/74 (58%), Gaps = 2/74 (3%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            + +F E+ +  ++ + +    +  P+ IQ +++PL+L     +++  +++G+GKT AF++
Sbjct  147  VQSFKELNLHEDLMKGIIAAGFQKPSKIQEKALPLLLSNPPRNLIGQSQSGTGKTAAFTL  206

Query  59   PVIQIVYETLKDQQ  72
             ++  V  T+   Q
Sbjct  207  NMLSRVDPTIPTPQ  220


>sp|A7ESL8|DBP4_SCLS1 ATP-dependent RNA helicase dbp4 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=dbp4 PE=3 SV=1
Length=808

 Score = 274 bits (700),  Expect = 2e-79, Method: Composition-based stats.
 Identities = 88/455 (19%), Positives = 169/455 (37%), Gaps = 71/455 (16%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            KN  +L L+      ++         +++  +                 +  +K   G  
Sbjct  49   KNFSELPLSGPTSSGLEASHFKTLTDVQSKAVPLAL--------KGKDILGAAKTGSGKT  100

Query  267  VKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
            +         + + K+   +   ALI+ P+RELA Q    +++  +Y         LIIG
Sbjct  101  LAFLVPVLENLYRQKWTELDGLGALIISPTRELAIQIFEVLRKIGRY---HTFSAGLIIG  157

Query  326  GVAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            G + +++   L   ++I+V TPGR L  +  T   ++  ++ LVLDEAD ++  G+   +
Sbjct  158  GRSLQEERERL-GRMNILVCTPGRMLQHMDQTAAFDVDNLQMLVLDEADRIMDMGFQTSV  216

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK--GEDSVPDTVH  442
            + +   +P      K+ Q ++ SAT  +  V  L+   +  P +V +      + P T+ 
Sbjct  217  DAILEHLP------KQRQTMLFSAT-QTKKVSDLARLSLKEPEYVAVHEAASSATPTTLQ  269

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
                 V      L E+L                                         I+
Sbjct  270  QHYCVVP-----LPEKLN-----------------------------------TLFGFIR  289

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
             +   + I+F  +      + +       G          + LHG +K   R     +F 
Sbjct  290  ANLKAKIIVFMSSGKQVRFVYESLRHLQPG-------IPLLHLHGRQKQTARLDITSKFS  342

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
                  +  TDV ARG+D   V +VI +  P++   Y+HR+GR  R  ++G A+  +   
Sbjct  343  SSKNSCIFATDVVARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYGKVGRAVLFLDPS  402

Query  623  KEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQ  657
            +E+        +        ++ +    I  N++Q
Sbjct  403  EEEGMLKRLEHKKVPIQKINIRPNKTQDI-KNQLQ  436


 Score = 92.1 bits (227),  Expect = 7e-18, Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 60/121 (50%), Gaps = 8/121 (7%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  FSE+ +    +  +E   +   TD+Q++++PL L G D+L AA+TGSGKT AF +PV
Sbjct  48   IKNFSELPLSGPTSSGLEASHFKTLTDVQSKAVPLALKGKDILGAAKTGSGKTLAFLVPV  107

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYD---RGSAFAIGSDGLCCQSREVK  117
            ++ +Y      Q+  +         S   +  +  ++   +   +   S GL    R ++
Sbjct  108  LENLYR-----QKWTELDGLGALIISPTRELAIQIFEVLRKIGRYHTFSAGLIIGGRSLQ  162

Query  118  E  118
            E
Sbjct  163  E  163


>sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 OS=Caenorhabditis 
elegans OX=6239 GN=glh-2 PE=1 SV=1
Length=974

 Score = 277 bits (708),  Expect = 2e-79, Method: Composition-based stats.
 Identities = 93/425 (22%), Positives = 158/425 (37%), Gaps = 59/425 (14%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
             K   +  L   +  ++ +        ++   L                 +A ++   G 
Sbjct  551  CKTFSEANLGETMKKNVAHAGYTKTTPIQQYTLPL--------IHQGHDIMACAQTGSGK  602

Query  266  IVKSQHSGNAQVTQTKFLPNA------PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLR  319
                     A++     L  A      P+ +I+ P+REL +Q  N  ++F  Y    ++R
Sbjct  603  TAAFLLPIMARLIDENDLNTAGEGGCYPRCIILTPTRELTDQIYNEGRKFA-YQTMMEIR  661

Query  320  ELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLS-Q  378
               + GG+A       +E G  I+VGT GR+      G + L + RF VLDEAD ++   
Sbjct  662  P--VYGGLAVGYNKGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAM  719

Query  379  GYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF-PTWVDLKGEDSV  437
            G+   I+ + N   +     +  Q ++ SAT     V++ +   +      + +    + 
Sbjct  720  GFGTDIDTIVNY--ESMPKKENRQTLMFSATFPD-SVQEAARNHLKEGYIMLAIDKIGAA  776

Query  438  PDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYA  497
               V       +    +                            +   E + I    Y 
Sbjct  777  NKCVLQEFEKCDRSEKK----------------------------DKLLEILGIDIDSYT  808

Query  498  VRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQN  557
                 E    + I+F   +   D L                Q   + +HG R+  ER + 
Sbjct  809  TEKNSEVYTKKTIVFVSQRAMADTLASIL---------SSAQVPAITIHGAREQRERSEA  859

Query  558  LERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAIS  617
            L +F+ G    LI T VA RG+DI GV +VIN  +PD   +Y+HRIGR GR    G A S
Sbjct  860  LRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNAGRATS  919

Query  618  LVATE  622
             ++ +
Sbjct  920  FISED  924


 Score = 102 bits (255),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 0/102 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              FSE  +   + + V    +   T IQ  ++PLI  G D++  A+TGSGKT AF +P++
Sbjct  552  KTFSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIM  611

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
              + +       G+ G        +   +     Y+ G  FA
Sbjct  612  ARLIDENDLNTAGEGGCYPRCIILTPTRELTDQIYNEGRKFA  653


>sp|Q0UR48|HAS1_PHANO ATP-dependent RNA helicase HAS1 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=HAS1 PE=3 SV=1
Length=610

 Score = 269 bits (688),  Expect = 2e-79, Method: Composition-based stats.
 Identities = 87/456 (19%), Positives = 160/456 (35%), Gaps = 74/456 (16%)

Query  212  LGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQH  271
            L L+      +K         ++   +                 +  +K   G  +    
Sbjct  136  LNLSERTMEAIKTMGFESMTEIQRKAIPPLLS--------GKDVLGAAKTGSGKTLAFLI  187

Query  272  SGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
                 ++  +F P N    ++V P+RELA Q     ++  +          ++IGG   R
Sbjct  188  PAIEMLSSMRFKPRNGTGVIVVSPTRELALQIFGVARELMEKHSQT---FGIVIGGANRR  244

Query  331  DQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHN  389
             +   L  GV++++ TPGRL D + +T       ++ L++DEAD +L  G+ D +  +  
Sbjct  245  AEAEKLAKGVNLLIATPGRLLDHLHNTQGFVFKNLKSLIIDEADRILEVGFEDEMRSIIK  304

Query  390  QIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH-FPTWVDLK--GEDSVPDTVHHVVV  446
             +P         Q ++ SAT  +  V+ L+   +   P ++++    E S  + +    V
Sbjct  305  ILPT------DRQTMLFSAT-QTTKVEDLARISLKAGPLYINVDYRKEHSTVEGLEQGYV  357

Query  447  PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM  506
              +  T                                        +       +K+H+ 
Sbjct  358  ICDSDT----------------------------------------RFRLLFSFLKKHQK  377

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
             + I+F  +        +                  + LHG  K   R      F     
Sbjct  378  KKVIVFFSSCNSVKFYAELL---------NYIDLPVLELHGKLKQQARTNRFFEFCNAQS  428

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER-MGLAISLVATEKEK  625
              LICTDVAARG+DI  V +VI    PD+ ++Y+HR+GR  R     G ++  +    E 
Sbjct  429  GTLICTDVAARGLDIPEVDWVIQFDPPDDPRDYIHRVGRTARGSEGKGRSLMFLLPS-EI  487

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE  661
             +  +            L  +    I      L+++
Sbjct  488  GFLKLLKEARVPLVEFELPANKILNIQSQLEALITK  523


 Score = 108 bits (270),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 30/95 (32%), Positives = 48/95 (51%), Gaps = 5/95 (5%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F E+ +     +A++ M +   T+IQ ++IP +L G DVL AA+TGSGKT AF IP I
Sbjct  131  TRFDELNLSERTMEAIKTMGFESMTEIQRKAIPPLLSGKDVLGAAKTGSGKTLAFLIPAI  190

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
            +++       + G     T     S   +  +  +
Sbjct  191  EMLSSMRFKPRNG-----TGVIVVSPTRELALQIF  220


>sp|Q9NR30|DDX21_HUMAN Nucleolar RNA helicase 2 OS=Homo sapiens 
OX=9606 GN=DDX21 PE=1 SV=5
Length=783

 Score = 273 bits (698),  Expect = 2e-79, Method: Composition-based stats.
 Identities = 115/491 (23%), Positives = 189/491 (38%), Gaps = 83/491 (17%)

Query  211  DLGLAFEIPPHMKNQAL--FPAC-----VLKNAELKFNFGEEEFKF---PPKDGFVALSK  260
            +  +  EIP   K  A   FP       +LK   + F F  +   F         +A ++
Sbjct  172  NSEIEQEIPVEQKEGAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQAR  231

Query  261  APDGYIVKSQHSGNAQV---TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPK  317
               G           ++    Q +    AP+ L++ P+RELA Q   +     K     K
Sbjct  232  TGTGKTFSFAIPLIEKLHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITK-----K  286

Query  318  LRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLS  377
            L      GG     Q   + NG+DI+VGTPGR+ D +  GKL+L++++ +VLDE D +L 
Sbjct  287  LSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLD  346

Query  378  QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF-PTWVDLKGEDS  436
             G++D +  + + +          Q ++ SAT   + V  +++K M      VDL G+ +
Sbjct  347  MGFADQVEEILS-VAYKKDSEDNPQTLLFSATCPHW-VFNVAKKYMKSTYEQVDLIGKKT  404

Query  437  --VPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG  494
                 TV H+ +  +                                   W++   ++  
Sbjct  405  QKTAITVEHLAIKCH-----------------------------------WTQRAAVIGD  429

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
               V +  +    + IIFC TK +   L Q              +     LHGD    +R
Sbjct  430  VIRVYSGHQ---GRTIIFCETKKEAQELSQ----------NSAIKQDAQSLHGDIPQKQR  476

Query  555  KQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGL  614
            +  L+ F+ G    L+ T+VAARG+DI  V  VI  + P + ++Y+HR GR GRA R G+
Sbjct  477  EITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGV  536

Query  615  AISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVE  674
             I     ++E     V    G       +                  I+      I  ++
Sbjct  537  CICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEI------------IKASSKDAIRLLD  584

Query  675  PDIKVPVDEFD  685
                  +  F 
Sbjct  585  SVPPTAISHFK  595


 Score = 74.4 bits (181),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 44/90 (49%), Gaps = 3/90 (3%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            AFS   +  E  + ++         IQA++   +  G D++  A TG+GKT +F+IP+I+
Sbjct  187  AFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIE  246

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQ  92
             ++    + Q+ K+G+       +   +  
Sbjct  247  KLH---GELQDRKRGRAPQVLVLAPTRELA  273


>sp|Q4P5U4|DBP4_USTMA ATP-dependent RNA helicase DBP4 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP4 PE=3 SV=2
Length=916

 Score = 276 bits (705),  Expect = 2e-79, Method: Composition-based stats.
 Identities = 99/466 (21%), Positives = 179/466 (38%), Gaps = 72/466 (15%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K    L L+      +K         ++   L  +              +  ++   G  
Sbjct  58   KQFTQLPLSDRTCRGLKRAGYTDMTDIQAKSLSLSL--------KGKDVLGAARTGSGKT  109

Query  267  VKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
            +         + + K+ P +   AL++ P+RELA Q    +++   Y         L+IG
Sbjct  110  LAFLIPVLEILYRRKWGPSDGLGALVISPTRELAIQIFEVLRKIGSY---HTFSAGLVIG  166

Query  326  GVAARDQLSVLENGVDIVVGTPGRLD-DLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            G   + +   L   ++I++ TPGRL   +  T   + S V+ LVLDEAD +L  G+S  +
Sbjct  167  GKDVKQEKDRLSR-INILIATPGRLLQHMDQTLGFDTSNVQVLVLDEADRILDMGFSRTL  225

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL---KGEDSVPDTV  441
            N +   +P      +  Q ++ SAT  +  VK L+   +  P +V +   + E   P  +
Sbjct  226  NAIVENLP------RNRQTMLFSAT-QTKRVKDLARLSLQDPEYVAVREPENEGCTPRGL  278

Query  442  HHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI  501
                + V  +                                         K +     I
Sbjct  279  EQHYMLVELEK----------------------------------------KLDLLFSFI  298

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
            + H   +A++F  +      + + F +   G        S + LHG +K  +R Q   +F
Sbjct  299  RTHTKCKALVFMSSCRQVQFVHETFCKLRPG-------VSLMALHGKQKQAKRLQIFTQF  351

Query  562  KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT  621
             K     L  TD+AARG+D   V +VI + +P++   Y+HR+GR  R    G ++  V  
Sbjct  352  TKTQHALLFATDIAARGLDFPAVDWVIQLDVPEDVDTYIHRVGRTARYTAKGNSLLFVLP  411

Query  622  EKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLN  667
             +EK      +++       + KE    +I  N++Q  +  E  + 
Sbjct  412  SEEKGILEALATKNIAIGRIKPKESKTQSI-QNQLQAFAFQEPQIK  456


 Score = 94.4 bits (233),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 35/121 (29%), Positives = 60/121 (50%), Gaps = 8/121 (7%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F+++ +     + ++   +   TDIQA+S+ L L G DVL AA TGSGKT AF IPV
Sbjct  57   LKQFTQLPLSDRTCRGLKRAGYTDMTDIQAKSLSLSLKGKDVLGAARTGSGKTLAFLIPV  116

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYD---RGSAFAIGSDGLCCQSREVK  117
            ++I+Y       +G           S   +  +  ++   +  ++   S GL    ++VK
Sbjct  117  LEILYRRKWGPSDG-----LGALVISPTRELAIQIFEVLRKIGSYHTFSAGLVIGGKDVK  171

Query  118  E  118
            +
Sbjct  172  Q  172


>sp|A4R8B5|HAS1_PYRO7 ATP-dependent RNA helicase HAS1 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=HAS1 PE=3 SV=2
Length=587

 Score = 268 bits (685),  Expect = 2e-79, Method: Composition-based stats.
 Identities = 82/393 (21%), Positives = 147/393 (37%), Gaps = 64/393 (16%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNN  305
                     +  +K   G  +         +   KF P N    ++V P+RELA Q    
Sbjct  144  PPLLAGKDVLGAAKTGSGKTLAFLIPAVEMLRSLKFKPRNGTGVIVVSPTRELALQIFGV  203

Query  306  IKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVR  365
             +   K+         ++IGG   R +   L  GV++++ TPGRL D +         +R
Sbjct  204  ARDLMKHHSQTY---GIVIGGANRRAEAEKLSKGVNLLIATPGRLLDHLQNTPFVFKNLR  260

Query  366  FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH-  424
             LV+DEAD +L  G+ D + ++   +P      K  Q ++ SAT  +  V+ L+   +  
Sbjct  261  SLVIDEADRILEIGFEDEMRQIIKILP------KERQSMLFSAT-QTTKVEDLARVSLRP  313

Query  425  FPTWVDLKGED--SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSP  482
             P ++++  E   S  + +    V                                    
Sbjct  314  GPLYLNVDEEKEYSTVEGLEQGYVVCEADK------------------------------  343

Query  483  EMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSC  542
                      +       +++ K  + I+F  +        +                  
Sbjct  344  ----------RFILLFSFLQKMKKKKIIVFFSSCNSVKYYAELLNYIDCQ---------V  384

Query  543  VCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHR  602
            + LHG +K  +R      F   D   LICTDVAARG+DI  V +++    PD+ ++Y+HR
Sbjct  385  LDLHGKQKQQKRTNTFFEFCNADRGTLICTDVAARGLDIPAVDWIVQFDPPDDPRDYIHR  444

Query  603  IGRVGRA-ERMGLAISLVATEKEKVWYHVCSSR  634
            +GR  R   + G ++  +   +     ++  +R
Sbjct  445  VGRTARGTNKKGRSLMFLLPSEVGFLTYLKQAR  477


 Score = 107 bits (267),  Expect = 5e-23, Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 5/94 (5%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            AFSE+ +     +A+EEM +   T+IQ   IP +L G DVL AA+TGSGKT AF IP ++
Sbjct  113  AFSELNLSENTMKAIEEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAVE  172

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
            ++       + G     T     S   +  +  +
Sbjct  173  MLRSLKFKPRNG-----TGVIVVSPTRELALQIF  201


>sp|P0CQ84|HAS1_CRYNJ ATP-dependent RNA helicase HAS1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=HAS1 PE=3 SV=1
Length=607

 Score = 268 bits (684),  Expect = 5e-79, Method: Composition-based stats.
 Identities = 80/420 (19%), Positives = 153/420 (36%), Gaps = 64/420 (15%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNN  305
                     +  ++   G  +         ++  +F P N    +I+ P+RELA Q    
Sbjct  161  PPLLAGKDVLGAARTGSGKTMAFLIPSVELLSTLRFKPVNGTGVIIISPTRELALQIFGV  220

Query  306  IKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQV  364
             K+  +          +++GG   + +   L  GV+++V TPGRL D + +T       +
Sbjct  221  AKELMQGHSQT---FGVLMGGANRKAEADKLVKGVNLIVATPGRLLDHLQNTKGFVFKNL  277

Query  365  RFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH  424
            + LV+DEAD +L  G+ + + ++   +P      +  Q ++ SAT  +  V  L+   + 
Sbjct  278  KALVIDEADRILEIGFEEEMKQIIKLLP-----SENRQSMLFSAT-QTTKVTDLARISLR  331

Query  425  -FPTWVDLK--GEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANS  481
              P ++++    E S  D +    V                                   
Sbjct  332  PGPLYINVDETKEASTADMLEQGYVVCESDQ-----------------------------  362

Query  482  PEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFS  541
                       +       +K++   + I+F  +        +                 
Sbjct  363  -----------RFMLLFTFLKKNLKKKVIVFFSSCNSVKYHAELL---------NYIDVP  402

Query  542  CVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH  601
             + LHG +K  +R      F       L+CTDVAARG+DI  V ++I    PD+ ++Y+H
Sbjct  403  VLDLHGKQKQQKRTNTFFEFINAPAGILLCTDVAARGLDIPKVDWIIQFDPPDDPRDYIH  462

Query  602  RIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE  661
            R+GR  RA + G ++  +    E  +              +  +     +      L+S+
Sbjct  463  RVGRTARAGKSGKSLLFLLPS-ELGFLRFLKVAKVPLNEYQFPQKKVADVQKQLESLISK  521


 Score = 99.8 bits (247),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 5/93 (5%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS + + P    A+E M +   T++QA +IP +L G DVL AA TGSGKT AF IP +++
Sbjct  131  FSTLNLSPPTTAAIERMGFETMTEVQARTIPPLLAGKDVLGAARTGSGKTMAFLIPSVEL  190

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
            +         G     T     S   +  +  +
Sbjct  191  LSTLRFKPVNG-----TGVIIISPTRELALQIF  218


>sp|P0CQ85|HAS1_CRYNB ATP-dependent RNA helicase HAS1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=HAS1 PE=3 SV=1
Length=607

 Score = 268 bits (684),  Expect = 5e-79, Method: Composition-based stats.
 Identities = 80/420 (19%), Positives = 153/420 (36%), Gaps = 64/420 (15%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNN  305
                     +  ++   G  +         ++  +F P N    +I+ P+RELA Q    
Sbjct  161  PPLLAGKDVLGAARTGSGKTMAFLIPSVELLSTLRFKPVNGTGVIIISPTRELALQIFGV  220

Query  306  IKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQV  364
             K+  +          +++GG   + +   L  GV+++V TPGRL D + +T       +
Sbjct  221  AKELMQGHSQT---FGVLMGGANRKAEADKLVKGVNLIVATPGRLLDHLQNTKGFVFKNL  277

Query  365  RFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH  424
            + LV+DEAD +L  G+ + + ++   +P      +  Q ++ SAT  +  V  L+   + 
Sbjct  278  KALVIDEADRILEIGFEEEMKQIIKLLP-----SENRQSMLFSAT-QTTKVTDLARISLR  331

Query  425  -FPTWVDLK--GEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANS  481
              P ++++    E S  D +    V                                   
Sbjct  332  PGPLYINVDETKEASTADMLEQGYVVCESDQ-----------------------------  362

Query  482  PEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFS  541
                       +       +K++   + I+F  +        +                 
Sbjct  363  -----------RFMLLFTFLKKNLKKKVIVFFSSCNSVKYHAELL---------NYIDVP  402

Query  542  CVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH  601
             + LHG +K  +R      F       L+CTDVAARG+DI  V ++I    PD+ ++Y+H
Sbjct  403  VLDLHGKQKQQKRTNTFFEFINAPAGILLCTDVAARGLDIPKVDWIIQFDPPDDPRDYIH  462

Query  602  RIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE  661
            R+GR  RA + G ++  +    E  +              +  +     +      L+S+
Sbjct  463  RVGRTARAGKSGKSLLFLLPS-ELGFLRFLKVAKVPLNEYQFPQKKVADVQKQLESLISK  521


 Score = 99.8 bits (247),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 5/93 (5%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS + + P    A+E M +   T++QA +IP +L G DVL AA TGSGKT AF IP +++
Sbjct  131  FSTLNLSPPTTAAIERMGFETMTEVQARTIPPLLAGKDVLGAARTGSGKTMAFLIPSVEL  190

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
            +         G     T     S   +  +  +
Sbjct  191  LSTLRFKPVNG-----TGVIIISPTRELALQIF  218


>sp|Q6CXW0|DBP8_KLULA ATP-dependent RNA helicase DBP8 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP8 PE=3 SV=1
Length=435

 Score = 263 bits (671),  Expect = 5e-79, Method: Composition-based stats.
 Identities = 90/434 (21%), Positives = 166/434 (38%), Gaps = 62/434 (14%)

Query  268  KSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
            K+       +T+    P     +++ P+RELA Q     +QF  +     +R  +++GG 
Sbjct  54   KTIAFAAPMLTKWSEDPQGMFGIVLTPTRELAMQI---AEQFTAFGSAMNIRVAIVVGGE  110

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN----LSQVRFLVLDEADGLLSQGYSDF  383
            +   Q   L+     ++ TPGRL   V     +    L +V+FLVLDEAD LL++ +S  
Sbjct  111  SIVQQAIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKD  170

Query  384  INRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHH  443
            +    + +P       + Q ++ +AT+    VK LS+                       
Sbjct  171  LATCVSILP----PKNKRQNLLFTATMTDQ-VKALSDA----------------------  203

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
                         +  GK  + T +V + DN          +    + +K  Y  + +  
Sbjct  204  ------------PQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYLYQILTS  251

Query  504  HKM--DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
             K      IIF    +  + L +           K        LH      ER  +++RF
Sbjct  252  EKYVKSSCIIFVNRTVTAEILRRTL---------KSLDVRVTSLHSQMPQQERTNSVQRF  302

Query  562  KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT  621
            +    R LI TDVA+RG+DI  V  V+N  +P     ++HR GR  RA R G ++  V  
Sbjct  303  RAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIHRAGRTARAGRHGESLCFVTE  362

Query  622  EKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPV  681
            +  +    +     K     +++E           + L+++      ++  ++ +     
Sbjct  363  KDIQRVEAIEERINK-----KMEEFTDVGDTAVIRKSLTKVTAAKRESLMAMDKEGFGER  417

Query  682  DEFDGKVTYGQKRA  695
             +   +    +++ 
Sbjct  418  RKLQKRKNESKEKT  431


 Score = 100 bits (249),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 62/157 (39%), Gaps = 20/157 (13%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F  +G    + +A+  M  + PT IQ   IP IL G D +  A TGSGKT AF+ P++
Sbjct  4    SEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPML  63

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA----------IGSDGLCC  111
                E           +       +   +  M   ++ +AF           +G + +  
Sbjct  64   TKWSE---------DPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQ  114

Query  112  QSREV-KEWHGCRATKGLMKGKHYYEVSCHDQGLCRV  147
            Q+ E+ K  H   AT G +             GL RV
Sbjct  115  QAIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRV  151


>sp|P25808|SPB4_YEAST ATP-dependent rRNA helicase SPB4 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 
GN=SPB4 PE=1 SV=1
Length=606

 Score = 268 bits (684),  Expect = 5e-79, Method: Composition-based stats.
 Identities = 93/463 (20%), Positives = 172/463 (37%), Gaps = 63/463 (14%)

Query  206  SKNGKDLGLAFEIPP----HMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKA  261
            SK+ +   L F + P     +          ++ + +    G ++       G    S  
Sbjct  2    SKSLEWDNLGFSLLPWIRTGLDVMGFETMTPVQASTIPMLAGNKDVVVDSVTG----SGK  57

Query  262  PDGYIVKSQHSG-NAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKY--IDNPKL  318
               +++         +   +KF      +LI+ P+REL+ Q  + +  F ++   D   +
Sbjct  58   TAAFVIPVLEKVVKEEANTSKFKKAHFHSLIIAPTRELSRQIESVVLSFLEHYPSDLFPI  117

Query  319  RELLIIG---GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGL  375
            +  L++G        D  + L N   I++GTPGR+ D +    +  S    +V+DEAD L
Sbjct  118  KCQLLVGTNEATVRDDVSNFLRNRPQILIGTPGRVLDFLQMPAVKTSACSMVVMDEADRL  177

Query  376  LSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED  435
            L   +     ++   +P      K+ +  + SAT+ S     + +  +  P  + +  ++
Sbjct  178  LDMSFIKDTEKILRLLP------KQRRTGLFSATMRSAG-SDIFKTGLRNPVRITVNSKN  230

Query  436  SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGE  495
              P ++      VNP                                          K +
Sbjct  231  QAPSSLKLNYCVVNPAE----------------------------------------KLQ  250

Query  496  YAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERK  555
              V  +  +K  + I++  T +       +    G   +   ++     LHG  +   R 
Sbjct  251  LLVSILNNYKFKKCIVYFPTCVSVSYFYSFIQYLG-KRNILVNEVEIFSLHGKLQTSART  309

Query  556  QNLERFKKGDVR-FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGL  614
            + L  F        L  TDVAARGIDI  V  VI +  P     ++HR GR GRA R+G 
Sbjct  310  KTLTAFTDSLSNSVLFTTDVAARGIDIPDVDLVIQLDPPTNTDMFMHRCGRTGRANRVGK  369

Query  615  AISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQ  657
            AI+ +   +E+ +      +        L+  G  T +Y + +
Sbjct  370  AITFLNEGREEDFIPFMQVKNVELEELDLEVKGITTNFYEDFR  412


 Score = 86.3 bits (212),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 28/101 (28%), Positives = 47/101 (47%), Gaps = 3/101 (3%)

Query  4    FSEMGVM--PEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            +  +G    P I   ++ M +   T +QA +IP++ G  DV++ + TGSGKT AF IPV+
Sbjct  7    WDNLGFSLLPWIRTGLDVMGFETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAAFVIPVL  66

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            + V +   +  + KK        A    +          +F
Sbjct  67   EKVVKEEANTSKFKKAHFHSLIIA-PTRELSRQIESVVLSF  106


>sp|A7A237|SPB4_YEAS7 ATP-dependent rRNA helicase SPB4 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=SPB4 PE=3 
SV=1
Length=606

 Score = 268 bits (684),  Expect = 5e-79, Method: Composition-based stats.
 Identities = 93/463 (20%), Positives = 172/463 (37%), Gaps = 63/463 (14%)

Query  206  SKNGKDLGLAFEIPP----HMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKA  261
            SK+ +   L F + P     +          ++ + +    G ++       G    S  
Sbjct  2    SKSLEWDNLGFSLLPWIRTGLDVMGFETMTPVQASTIPMLAGNKDVVVDSVTG----SGK  57

Query  262  PDGYIVKSQHSG-NAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKY--IDNPKL  318
               +++         +   +KF      +LI+ P+REL+ Q  + +  F ++   D   +
Sbjct  58   TAAFVIPVLEKVVKEEANTSKFKKAHFHSLIIAPTRELSRQIESVVLSFLEHYPSDLFPI  117

Query  319  RELLIIG---GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGL  375
            +  L++G        D  + L N   I++GTPGR+ D +    +  S    +V+DEAD L
Sbjct  118  KCQLLVGTNEATVRDDVSNFLRNRPQILIGTPGRVLDFLQMPAVKTSACSMVVMDEADRL  177

Query  376  LSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED  435
            L   +     ++   +P      K+ +  + SAT+ S     + +  +  P  + +  ++
Sbjct  178  LDMSFIKDTEKILRLLP------KQRRTGLFSATMRSAG-SDIFKTGLRNPVRITVNSKN  230

Query  436  SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGE  495
              P ++      VNP                                          K +
Sbjct  231  QAPSSLKLNYCVVNPAE----------------------------------------KLQ  250

Query  496  YAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERK  555
              V  +  +K  + I++  T +       +    G   +   ++     LHG  +   R 
Sbjct  251  LLVSILNNYKFKKCIVYFPTCVSVSYFYSFIQYLG-KRNILVNEVEIFSLHGKLQTSART  309

Query  556  QNLERFKKGDVR-FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGL  614
            + L  F        L  TDVAARGIDI  V  VI +  P     ++HR GR GRA R+G 
Sbjct  310  KTLTAFTDSLSNSVLFTTDVAARGIDIPDVDLVIQLDPPTNTDMFMHRCGRTGRANRVGK  369

Query  615  AISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQ  657
            AI+ +   +E+ +      +        L+  G  T +Y + +
Sbjct  370  AITFLNEGREEDFIPFMQVKNVELEELDLEVKGITTNFYEDFR  412


 Score = 86.3 bits (212),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 28/101 (28%), Positives = 47/101 (47%), Gaps = 3/101 (3%)

Query  4    FSEMGVM--PEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            +  +G    P I   ++ M +   T +QA +IP++ G  DV++ + TGSGKT AF IPV+
Sbjct  7    WDNLGFSLLPWIRTGLDVMGFETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAAFVIPVL  66

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            + V +   +  + KK        A    +          +F
Sbjct  67   EKVVKEEANTSKFKKAHFHSLIIA-PTRELSRQIESVVLSF  106


>sp|P0CR03|DBP8_CRYNB ATP-dependent RNA helicase DBP8 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=DBP8 PE=3 SV=1
Length=619

 Score = 268 bits (685),  Expect = 6e-79, Method: Composition-based stats.
 Identities = 96/441 (22%), Positives = 165/441 (37%), Gaps = 35/441 (8%)

Query  223  KNQALFPACVLKNAELKF--NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQT  280
                 F +  L    +    +   ++           +    D        SG       
Sbjct  149  SADVTFESLGLSRPLITALASINIKKPTEIQAACVEPILSGRDCIGGAKTGSGKTMAFAL  208

Query  281  KFL------PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLS  334
              +      P    A+++ P+RELA Q         K +    L    I+GG+    Q  
Sbjct  209  PIVERIARDPFGVWAVVLTPTRELAYQLSEQFLVIGKPLG---LTTATIVGGMDMMKQAQ  265

Query  335  VLENGVDIVVGTPGRLDDLVSTGKL---NLSQVRFLVLDEADGLLSQGYSDFINRMHNQI  391
             LE    I+V TPGRL DL+ +G +    LS+VR LVLDEAD +L+  ++  +  + +QI
Sbjct  266  ELEARPHIIVATPGRLCDLLRSGGVGPGKLSRVRTLVLDEADRMLTPSFAPELAYLFSQI  325

Query  392  PQVTSDGKRLQVIVCSATLHSFDVKKLSEK----IMHFPTWVDLKGEDSVPDTVHHVVVP  447
            P       + Q  + +AT+ S  + +L+ K        P    +  +      +    + 
Sbjct  326  PA------KRQTCLFTATV-SEAIMELANKEPPAGKQRPFVYRVASDTLTVSNLKQKYLF  378

Query  448  VNPKT-DRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM  506
            +  +  D     + ++ +   DV  + + +         +   K  K + A        +
Sbjct  379  IPSQIRDPYLLYILQNPLEDIDVALRVDPKKAKAREREAALGKKGKKPKQAKEEEDAPSV  438

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
               +IF +                            V LH      +R  +L RF+  +V
Sbjct  439  PSTVIFTQRCATA---------HLLHLLLNSLDIPSVPLHSHLTQPQRLLSLARFRAHEV  489

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
              L+ TDV +RG+DI  V  VIN   P    +YVHR+GR  RA R G+A++++     ++
Sbjct  490  PVLVTTDVGSRGLDIPEVAMVINWDCPRRSDDYVHRVGRTARAGRGGVAVTIITERDTEL  549

Query  627  WYHVCSSRGKGCYNTRLKEDG  647
               +           +L ED 
Sbjct  550  VKIIEDEVNVRLEELKLDEDK  570


 Score = 92.9 bits (229),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 22/96 (23%), Positives = 43/96 (45%), Gaps = 9/96 (9%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F  +G+   +  A+  ++   PT+IQA  +  IL G D +  A+TGSGKT AF++P+++
Sbjct  153  TFESLGLSRPLITALASINIKKPTEIQAACVEPILSGRDCIGGAKTGSGKTMAFALPIVE  212

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDR  98
             +          +          +   +      ++
Sbjct  213  RI---------ARDPFGVWAVVLTPTRELAYQLSEQ  239


>sp|Q3ZBV2|DD19A_BOVIN ATP-dependent RNA helicase DDX19A OS=Bos 
taurus OX=9913 GN=DDX19A PE=2 SV=1
Length=478

 Score = 264 bits (674),  Expect = 6e-79, Method: Composition-based stats.
 Identities = 110/467 (24%), Positives = 187/467 (40%), Gaps = 109/467 (23%)

Query  228  FPACVLKNAELKFNFG---EEEFKFPPKDGFVALSKAPDGYIVKSQHSGN-------AQV  277
            F    LK   L+  +        K       + L++ P   I +SQ           A +
Sbjct  93   FEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAML  152

Query  278  TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE  337
            ++ +     P+ L + P+ ELA QT   I+Q  K+  +P+L+    + G        + E
Sbjct  153  SRVEPAERYPQCLCLSPTYELALQTGKVIEQMGKF--HPELKLAYAVRGNKLERGQKISE  210

Query  338  NGVDIVVGTPGRLDDLVST-GKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVT  395
                IV+GTPG + D  S    ++  +++  VLDEAD ++ +QG+ D   R+   +P   
Sbjct  211  ---HIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP---  264

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL  455
               +  Q+++ SAT     V K ++K++  P  + LK E+   DT+    V  N + +  
Sbjct  265  ---RNCQMLLFSATFED-SVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNSRDE--  318

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRT  515
                                                 K +          + QA+IFC T
Sbjct  319  -------------------------------------KFQALCNIYGAITIAQAMIFCHT  341

Query  516  KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA  575
            +     L     ++G              L G+    +R   +ERF++G  + L+ T+V 
Sbjct  342  RKTASWLAAELSKEG---------HQVALLSGEMVVEQRAAVIERFREGKEKVLVTTNVC  392

Query  576  ARGIDIHGVPYVINVTLP------DEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            ARGID+  V  VIN  LP       + + Y+HRIGR GR  + GLA+++V ++       
Sbjct  393  ARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK-------  445

Query  630  VCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPD  676
                                    + M +L+ I+EH N  I +++ D
Sbjct  446  ------------------------HSMNILNRIQEHFNKKIERLDTD  468


 Score = 87.1 bits (214),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 60/149 (40%), Gaps = 3/149 (2%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            + +F E+ + P++ Q V  M +  P+ IQ  ++P++L     +++  +++G+GKT AF +
Sbjct  90   VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVL  149

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKE  118
             ++  V    +  Q      T      +     QM  +      A    G   +  +   
Sbjct  150  AMLSRVEPAERYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNKLERGQKIS  209

Query  119  WHGCRATKGLMKGKHYYEVSCHDQGLCRV  147
             H    T G +      ++   D    +V
Sbjct  210  EHIVIGTPGTVLD-WCSKLKFIDPKKIKV  237


>sp|Q9DBN9|DDX59_MOUSE Probable ATP-dependent RNA helicase DDX59 
OS=Mus musculus OX=10090 GN=Ddx59 PE=1 SV=1
Length=619

 Score = 268 bits (684),  Expect = 7e-79, Method: Composition-based stats.
 Identities = 94/456 (21%), Positives = 187/456 (41%), Gaps = 70/456 (15%)

Query  186  FTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEE  245
            +  H  I   + + +  ++  K  + LG++ +     +    F  C      L  N  + 
Sbjct  168  YKEHPFI---VTLKEDQIETLK--QQLGISVQGQDVARPIIDFEHCGFPE-TLNQNLKKS  221

Query  246  EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP---------NAPKALIVEPSR  296
             ++ P       +     G  + +     +  T    LP           P ALI+ P+R
Sbjct  222  GYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIIRAFSEDKTPSALILTPTR  281

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVST  356
            ELA Q     K+    +  P+++ +L++GG+    QL  L   V +++ TPGRL D++  
Sbjct  282  ELAIQIERQAKELMSGL--PRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPGRLLDIIKQ  339

Query  357  GKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVK  416
              ++LS ++ +V+DEAD +L  G+   +  +    P         Q I+ SAT+    ++
Sbjct  340  SSVSLSGIKIVVVDEADTMLKMGFQQQVLDVLEHTPG------DCQTILVSATIPD-SIE  392

Query  417  KLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTR  476
            +L+++++H P  +    ++    +V  +++ V                            
Sbjct  393  QLTDQLLHNPVRIITGDKNLPCASVRQIILWVE---------------------------  425

Query  477  PGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKK  536
                 P    +  +IL  +   +          ++F   K+  D L +          +K
Sbjct  426  ----DPAKKKKLFEILNDQKLFK-------PPVLVFVDCKLGADLLSE--------AVQK  466

Query  537  GHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEK  596
                +   +H ++   ER+  L+   +GD   ++ T V  RG+D+  V  V+N  +P   
Sbjct  467  ITGLNSTSIHSEKSQVERRDILKGLLEGDYEVVVSTGVLGRGLDLVNVKLVVNFDMPSSM  526

Query  597  QNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
              YVH++GRVGR  + G AI+ +    +++++ V  
Sbjct  527  DEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDVAK  562


 Score = 96.7 bits (239),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 9/106 (8%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F   G    + Q +++  + +PT IQ + IP+ L G D+L +A+TGSGKT AF +PVI  
Sbjct  205  FEHCGFPETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIIR  264

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGL  109
             +   K         T      +   +  +    +      G   +
Sbjct  265  AFSEDK---------TPSALILTPTRELAIQIERQAKELMSGLPRM  301


>sp|Q86TM3|DDX53_HUMAN Probable ATP-dependent RNA helicase DDX53 
OS=Homo sapiens OX=9606 GN=DDX53 PE=1 SV=3
Length=631

 Score = 268 bits (685),  Expect = 8e-79, Method: Composition-based stats.
 Identities = 91/404 (23%), Positives = 159/404 (39%), Gaps = 65/404 (16%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQ---TKFLPNAPKALIVEPSRELAEQTL  303
                     + +++   G  +     G   +     ++   N P  L++ P+RELA    
Sbjct  254  PIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELAL---  310

Query  304  NNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQ  363
            +   +  KY     L+ + I GG     Q+  +  GVDI++ TPGRL+DL     +NL  
Sbjct  311  HVEAECSKY-SYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRS  369

Query  364  VRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIM  423
            + +LV+DEAD +L   +   I ++              Q ++ SAT     V++L+   +
Sbjct  370  ITYLVIDEADKMLDMEFEPQIRKIL------LDVRPDRQTVMTSATWPDT-VRQLALSYL  422

Query  424  HFPTWVDLKG-EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSP  482
              P  V +        +TV   ++    K  R                            
Sbjct  423  KDPMIVYVGNLNLVAVNTVKQNIIVTTEKEKR----------------------------  454

Query  483  EMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSC  542
                                    D+ I+F   K   D+L   F  QG          S 
Sbjct  455  -----------ALTQEFVENMSPNDKVIMFVSQKHIADDLSSDFNIQG---------ISA  494

Query  543  VCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHR  602
              LHG+ +  ++++ +E FK G+++ LI TD+ +RG+D++ V +V N   P     YVHR
Sbjct  495  ESLHGNSEQSDQERAVEDFKSGNIKILITTDIVSRGLDLNDVTHVYNYDFPRNIDVYVHR  554

Query  603  IGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKED  646
            +G +GR  + G +++L+     K+   +     +   N  + ED
Sbjct  555  VGYIGRTGKTGTSVTLITQRDSKMAGELIKILDRA--NQSVPED  596


 Score = 85.2 bits (209),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 55/109 (50%), Gaps = 6/109 (6%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            AF +    P++ +++  +  + PT IQ+++ P+IL G D+++ A+TG+GKT ++ +P   
Sbjct  226  AFQQY---PDLLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFI  282

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
             + ++    +E + G   +    +   +  ++     S ++       C
Sbjct  283  HL-DSQPISREQRNGPGML--VLTPTRELALHVEAECSKYSYKGLKSIC  328


>sp|Q9SB89|RH27_ARATH DEAD-box ATP-dependent RNA helicase 27 OS=Arabidopsis 
thaliana OX=3702 GN=RH27 PE=2 SV=2
Length=633

 Score = 268 bits (684),  Expect = 9e-79, Method: Composition-based stats.
 Identities = 91/464 (20%), Positives = 177/464 (38%), Gaps = 72/464 (16%)

Query  203  VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAP  262
            +  +K  + L L+      +K         ++   +      E+         +  ++  
Sbjct  150  IMTNKTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGED--------VLGAARTG  201

Query  263  DGYIVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLREL  321
             G  +         + + KF P N    L++ P+RELA Q+    K+  KY         
Sbjct  202  SGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQT---VG  258

Query  322  LIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGY  380
             +IGG   + +  +L  GV+++V TPGRL D + +T       ++FLV+DEAD +L Q +
Sbjct  259  KVIGGEKRKTEAEILAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNF  318

Query  381  SDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL--KGEDSVP  438
             + + ++ N +P      K  Q  + SAT  S  V+ L+   +  P ++D+    ++   
Sbjct  319  EEDLKKILNLLP------KTRQTSLFSAT-QSAKVEDLARVSLTSPVYIDVDEGRKEVTN  371

Query  439  DTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAV  498
            + +      V      L+                                          
Sbjct  372  EGLEQGYCVVPSAMRLLF---------------------------------------LLT  392

Query  499  RAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNL  558
               +     + ++F  T        + F         +  +F C+ + G    ++R    
Sbjct  393  FLKRFQGKKKIMVFFSTCKSTKFHAELF---------RYIKFDCLEIRGGIDQNKRTPTF  443

Query  559  ERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA-ERMGLAIS  617
             +F K +   L+CT+VAARG+D   V +++    PD   +Y+HR+GR  R     G A+ 
Sbjct  444  LQFIKAETGILLCTNVAARGLDFPHVDWIVQYDPPDNPTDYIHRVGRTARGEGAKGKALL  503

Query  618  LVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE  661
            ++  ++ K   ++ +++         +E     +      L+SE
Sbjct  504  VLTPQELKFIQYLKAAKI-PVEEHEFEEKKLLDVKPFVENLISE  546


 Score = 98.3 bits (243),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 52/119 (44%), Gaps = 8/119 (7%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F  + +     ++++EM +   T IQA++IP ++ G DVL AA TGSGKT AF IP +
Sbjct  154  KTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV  213

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY---DRGSAFAIGSDGLCCQSREVK  117
            +++Y      + G     T         +  +  Y        +   + G      + K
Sbjct  214  ELLYRVKFTPRNG-----TGVLVICPTRELAIQSYGVAKELLKYHSQTVGKVIGGEKRK  267


>sp|Q8K363|DDX18_MOUSE ATP-dependent RNA helicase DDX18 OS=Mus 
musculus OX=10090 GN=Ddx18 PE=1 SV=1
Length=660

 Score = 268 bits (686),  Expect = 9e-79, Method: Composition-based stats.
 Identities = 97/511 (19%), Positives = 188/511 (37%), Gaps = 68/511 (13%)

Query  209  GKDLGLAFEIPPHMKNQALFPACV-LKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIV  267
            G     +F    ++ N+    A   +    +     +           +A +K   G  +
Sbjct  162  GAFEDTSFASLSNLVNENTLKAIEEMGFKRMTEIQHKSIRPLLEGRDLLAAAKTGSGKTL  221

Query  268  KSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
                     + + KF+P N    LI+ P+RELA QT   +K+   +  +      LI+GG
Sbjct  222  AFLIPVIELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTY---GLIMGG  278

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
                 ++  L NG++I+V TPGRL D + +T       ++ LV+DEAD +L  G+ + + 
Sbjct  279  SNRSAEVQKLLNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELK  338

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF-PTWVDLKGEDS--VPDTVH  442
            ++   +P       R Q ++ SAT  +  V+ L+   +   P +V +  +      D + 
Sbjct  339  QIIKLLPA------RRQTMLFSAT-QTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLE  391

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
               V    +                                         +       +K
Sbjct  392  QGYVVCPSEK----------------------------------------RFLLLFTFLK  411

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
            +++  + ++F  + +      +                  + +HG +K ++R     +F 
Sbjct  412  KNRKKKVMVFFSSCMSVKYHYELL---------NYIDLPVLAIHGKQKQNKRTTTFFQFC  462

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA-ERMGLAISLVAT  621
              D   L+CTDVAARG+DI  V +++    PD+ + Y+HR+GR  R     G A+ ++  
Sbjct  463  NADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRP  522

Query  622  EKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPV  681
            E+     ++  S+     N         +   ++++ L E    L+ +  +         
Sbjct  523  EELGFLRYLKQSKVP--LNQFDFSWSKVSDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAY  580

Query  682  DEFDGKVTYGQKRAAGGGSYKGHVDILAPTV  712
            D    K  +                 + P V
Sbjct  581  DSHSLKQIFNVNNLNLPQVALSFGFKVPPFV  611


 Score = 95.6 bits (236),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 51/97 (53%), Gaps = 7/97 (7%)

Query  2    AAFSEMG--VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
             +F+ +   V     +A+EEM +   T+IQ +SI  +L G D+L AA+TGSGKT AF IP
Sbjct  167  TSFASLSNLVNENTLKAIEEMGFKRMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP  226

Query  60   VIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
            VI+++ +     + G     T     S   +  M  +
Sbjct  227  VIELIVKLKFMPRNG-----TGVLILSPTRELAMQTF  258


>sp|Q1E0Z3|DBP8_COCIM ATP-dependent RNA helicase DBP8 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DBP8 PE=3 SV=1
Length=536

 Score = 265 bits (677),  Expect = 1e-78, Method: Composition-based stats.
 Identities = 104/461 (23%), Positives = 168/461 (36%), Gaps = 77/461 (17%)

Query  190  DTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKF  249
            D +        G      +   LGLA  +   +   A+     ++ A +         + 
Sbjct  89   DPVTAKDAFAMGLQSMDSSFSSLGLAPWLVGSLSAMAIRRPTAIQRACIP--------EI  140

Query  250  PPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQF  309
                  +  S+   G  V        + ++  F      A+++ P+RELA Q     +QF
Sbjct  141  LKGRDCIGGSRTGSGKTVAFAAPILHRWSEDPF---GIFAVVLTPTRELALQIF---EQF  194

Query  310  KKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN----LSQVR  365
            K       L+ +LI GG   R Q   L     +V+ TPGRL D + T   +    L++VR
Sbjct  195  KAISAPQSLKPVLITGGSEMRPQAIALSTRPHVVIATPGRLADHIKTSGQDTIYGLNRVR  254

Query  366  FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF  425
             +VLDEAD LL+ G    +  +   +  +       Q ++ +AT+ + +V+ L  K M  
Sbjct  255  MVVLDEADRLLASGPGSMLPDVETCLSALPPSTS-RQTLLFTATV-TQEVRAL--KSMPR  310

Query  426  P--------TWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRP  477
            P        T +  +   ++P T+    + V                             
Sbjct  311  PKDRLPIFVTEISTENNTTIPPTLKQCYLQVP----------------------------  342

Query  478  GANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKG  537
                              + + +   +    AIIFC                      + 
Sbjct  343  ----------MTHREAFLHVLLSTDANSSKPAIIFCNRTKTA---------DLLDRLLRR  383

Query  538  HQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQ  597
                   LH      ER  NL RF+    R L+ TDVAARG+DI  V  V+N  +P    
Sbjct  384  LGHRVTSLHSLLPQSERTSNLARFRASAARLLVATDVAARGLDIPSVGLVVNFDVPRNPD  443

Query  598  NYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGC  638
            +Y+HR+GR  RA R G AI+LV     ++   +    G+  
Sbjct  444  DYIHRVGRTARAGREGEAITLVGQRDVQLVLAIEERVGRQM  484


 Score = 100 bits (250),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 45/103 (44%), Gaps = 9/103 (9%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            ++FS +G+ P +  ++  M    PT IQ   IP IL G D +  + TGSGKT AF+ P++
Sbjct  106  SSFSSLGLAPWLVGSLSAMAIRRPTAIQRACIPEILKGRDCIGGSRTGSGKTVAFAAPIL  165

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
                E                   +   +  +  +++  A + 
Sbjct  166  HRWSE---------DPFGIFAVVLTPTRELALQIFEQFKAISA  199


>sp|Q9FLB0|RH18_ARATH DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis 
thaliana OX=3702 GN=RH18 PE=2 SV=1
Length=593

 Score = 266 bits (681),  Expect = 1e-78, Method: Composition-based stats.
 Identities = 93/378 (25%), Positives = 161/378 (43%), Gaps = 46/378 (12%)

Query  276  QVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
            + T     P+    +I+ P+REL+ Q  N  + F   + N  +  +L++GG   +  + +
Sbjct  80   RSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLAN--VNSVLLVGGREVKADMKI  137

Query  336  LEN-GVDIVVGTPGRLDDLVSTGK-LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ  393
            +E  G ++++GTPGRL D++   + L+   +  L+LDEAD LL  G+   +N + +++P 
Sbjct  138  IEEEGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLP-  196

Query  394  VTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTD  453
                 K+ +  + SAT  +  V++L++  +  P  V+++ +     +             
Sbjct  197  -----KQRRTGLFSAT-QTEGVEELAKAGLRNPVRVEVRAKSKSESSQQLT---------  241

Query  454  RLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFC  513
                                 T  G +   M  EA K  K    V  + ++   + I+F 
Sbjct  242  ------------------NSKTPSGLHLEYMECEADK--KSSQLVDLLIKNSDKKLIVFF  281

Query  514  RTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTD  573
             T    D       +            S + +HGD K + R + L  F K     L+CTD
Sbjct  282  MTCASVDYWGLVLSKIPAL-----KSISLIPIHGDMKQNARDKALASFTKASSGALLCTD  336

Query  574  VAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
            VAARG+DI G+ YV+    P +   + HR GR  R  R G AI  +  ++E  +      
Sbjct  337  VAARGLDIPGIDYVVQYDPPQDPNMFNHRAGRTARLGRQGRAIVFLLPKEEA-YVEFMRI  395

Query  634  RGKGCYNTRLKEDGGCTI  651
            R       +  ED    I
Sbjct  396  RRVPLEERKCSEDASDVI  413


 Score = 86.7 bits (213),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 34/132 (26%), Positives = 56/132 (42%), Gaps = 9/132 (7%)

Query  2    AAFSEM--GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
              FS++   +  +I +A+ + D+   T +QA +IPL+    DV + A TGSGKT AF +P
Sbjct  14   TRFSDLEPPLSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVP  73

Query  60   VIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDG----LCCQSRE  115
            +++I+    +      K    +    S   +     Y+    F          L    RE
Sbjct  74   LVEIL---RRSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGRE  130

Query  116  VKEWHGCRATKG  127
            VK        +G
Sbjct  131  VKADMKIIEEEG  142


>sp|Q61655|DD19A_MOUSE ATP-dependent RNA helicase DDX19A OS=Mus 
musculus OX=10090 GN=Ddx19a PE=1 SV=2
Length=478

 Score = 263 bits (672),  Expect = 1e-78, Method: Composition-based stats.
 Identities = 113/467 (24%), Positives = 189/467 (40%), Gaps = 109/467 (23%)

Query  228  FPACVLKNAELKFNFG---EEEFKFPPKDGFVALSKAPDGYIVKSQHSGN-------AQV  277
            F    LK   L+  +        K       + L++ P   I +SQ           A +
Sbjct  93   FEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAML  152

Query  278  TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE  337
            ++ +     P+ L + P+ ELA QT   I+Q  K+  +P+L+    + G        V E
Sbjct  153  SRVEPADRYPQCLCLSPTYELALQTGKVIEQMGKF--HPELKLAYAVRGNKLERGQKVSE  210

Query  338  NGVDIVVGTPGRLDDLVST-GKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVT  395
                IV+GTPG + D  S    ++  +++  VLDEAD ++ +QG+ D   R+   +P   
Sbjct  211  ---QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP---  264

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL  455
               +  Q+++ SAT     V K ++K++  P  + LK E+   DT+    V  N + ++ 
Sbjct  265  ---RNCQMLLFSATFED-SVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNREEKF  320

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRT  515
                                              + L   Y    I      QA+IFC T
Sbjct  321  ----------------------------------QALCNLYGAITIA-----QAMIFCHT  341

Query  516  KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA  575
            +     L     ++G              L G+    +R   +ERF++G  + L+ T+V 
Sbjct  342  RKTASWLAAELSKEG---------HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVC  392

Query  576  ARGIDIHGVPYVINVTLP------DEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            ARGID+  V  VIN  LP       + + Y+HRIGR GR  + GLA+++V ++       
Sbjct  393  ARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK-------  445

Query  630  VCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPD  676
                                    + M +L+ I+EH N  I +++ D
Sbjct  446  ------------------------HSMNILNRIQEHFNKKIERLDTD  468


 Score = 84.4 bits (207),  Expect = 8e-16, Method: Composition-based stats.
 Identities = 27/154 (18%), Positives = 60/154 (39%), Gaps = 19/154 (12%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            + +F E+ + P++ Q V  M +  P+ IQ  ++P++L     +++  +++G+GKT AF +
Sbjct  90   VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVL  149

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKE  118
             ++  V    +  Q             S   +  +             + +     E+K 
Sbjct  150  AMLSRVEPADRYPQ---------CLCLSPTYELALQT-------GKVIEQMGKFHPELKL  193

Query  119  WHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTM  152
             +  R  K     K   ++     G   + W + 
Sbjct  194  AYAVRGNKLERGQKVSEQIVIGTPGTV-LDWCSK  226


>sp|Q0UCB9|DBP5_PHANO ATP-dependent RNA helicase DBP5 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=DBP5 PE=3 SV=1
Length=471

 Score = 263 bits (671),  Expect = 1e-78, Method: Composition-based stats.
 Identities = 98/466 (21%), Positives = 183/466 (39%), Gaps = 85/466 (18%)

Query  220  PHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQ  279
              ++N        ++   L                 +A S++  G       +  +++  
Sbjct  77   KGVRNMNFRKPSKIQEKALPLLLMNPP------TNMIAQSQSGTGKTAAFSLNILSRIDL  130

Query  280  TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
            ++   N P+A+ + PSRELA Q L  I    ++++   L+ +  I     R+Q       
Sbjct  131  SR---NEPQAIALAPSRELARQILGVITHMGQFMEG--LKTMAAIPDPTKRNQRLD----  181

Query  340  VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLS-QGYSDFINRMHNQIPQVTSDG  398
              ++VGTPG + + +    +    ++ LVLDEAD +L  QG  D   R+ + +P      
Sbjct  182  AHVLVGTPGTVQEQLKRRLIKSDSIKILVLDEADNMLDQQGMGDQCTRVKSLLP------  235

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER  458
            K +Q ++ SAT     V   + K       + L  E+   + +  + + ++   D+    
Sbjct  236  KNIQTVLFSATFPPA-VINYANKFAPNSNVLTLAHEELTIEGIKQLYIDIDKDQDKYSTL  294

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
            L    + T                                          +IIF RT+  
Sbjct  295  LKFYGLMTQA---------------------------------------SSIIFVRTRRT  315

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
             + LE+  + +G              L G  +  +R + +++F+ G+ + LI T+V ARG
Sbjct  316  AEELERRMVAEG---------HKVAQLSGALEGQDRDRVIDQFRSGEAKVLITTNVLARG  366

Query  579  IDIHGVPYVINVTLPD-------EKQNYVHRIGRVGRAERMGLAISLVATEKE-KVWYHV  630
            ID+  V  VIN  +P        + + Y+HRIGR GR  R+G+A++ V  +   +  + +
Sbjct  367  IDVESVTMVINYDVPTMADGREADPETYLHRIGRTGRFGRVGVALTFVHDKASWQQLHDI  426

Query  631  CSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPD  676
             S      + T L      + W N  +++ +I +      S  E  
Sbjct  427  AS-----YFKTDLH-PIDTSDWDNVEEMIQKIIKSSRAGKSTKEMT  466


 Score = 65.2 bits (157),  Expect = 1e-09, Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 50/109 (46%), Gaps = 11/109 (10%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSIPV  60
            +F E+ +  E+ + V  M++  P+ IQ +++PL+L     +++  +++G+GKT AFS+ +
Sbjct  65   SFEELQLSEELLKGVRNMNFRKPSKIQEKALPLLLMNPPTNMIAQSQSGTGKTAAFSLNI  124

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGL  109
            +  +  +  + Q             +   +         +      +GL
Sbjct  125  LSRIDLSRNEPQ---------AIALAPSRELARQILGVITHMGQFMEGL  164


>sp|Q9JIK5|DDX21_MOUSE Nucleolar RNA helicase 2 OS=Mus musculus 
OX=10090 GN=Ddx21 PE=1 SV=3
Length=851

 Score = 272 bits (696),  Expect = 1e-78, Method: Composition-based stats.
 Identities = 103/440 (23%), Positives = 172/440 (39%), Gaps = 73/440 (17%)

Query  252  KDGFVALSKAPDGYIVKSQHSGNAQVT---QTKFLPNAPKALIVEPSRELAEQTLNNIKQ  308
                +A ++   G           ++    Q +    AP+ L++ P+RELA Q   +   
Sbjct  295  GKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSD  354

Query  309  FKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLV  368
              K     KL      GG     Q+  + +G+DI+VGTPGR+ D +  GKL+L++++ +V
Sbjct  355  ITK-----KLSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVV  409

Query  369  LDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF-PT  427
            LDE D +L  G++D +  +   +          Q ++ SAT   + V  +++K M     
Sbjct  410  LDEVDQMLDMGFADQVEEIL-CVAYKKDSEDNPQTLLFSATCPHW-VFNVAKKYMKSTYE  467

Query  428  WVDLKGEDS--VPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW  485
             VDL G+ +     TV H+ +  +                                   W
Sbjct  468  QVDLIGKKTQKAAITVEHLAIKCH-----------------------------------W  492

Query  486  SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL  545
            +E   ++     V +  +    + IIFC TK D   L Q    +               L
Sbjct  493  TERAAVIGDVIRVYSGHQ---GRTIIFCETKKDAQELSQNTCIKQ----------DAQSL  539

Query  546  HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR  605
            HGD    +R+  L+ F+ G+   L+ T+VAARG+DI  V  V+    P + ++Y+HR GR
Sbjct  540  HGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGR  599

Query  606  VGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEH  665
             GRA R G+ I     ++E     V    G       +                  I+  
Sbjct  600  TGRAGRTGVCICFYQNKEEYQLAQVEQKAGIKFKRIGVPSATEI------------IKAS  647

Query  666  LNCTISQVEPDIKVPVDEFD  685
                I  ++      +  F 
Sbjct  648  SKDAIRLLDSVPPTAISHFK  667


 Score = 74.8 bits (182),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 24/90 (27%), Positives = 43/90 (48%), Gaps = 3/90 (3%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            AFS   +  E  + ++         IQA++   +  G D++  A TG+GKT +F+IP+I+
Sbjct  259  AFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIE  318

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQ  92
             +   L   QE K+G+       +   +  
Sbjct  319  KLQGGL---QERKRGRAPQVLVLAPTRELA  345


>sp|A7EY76|DBP5_SCLS1 ATP-dependent RNA helicase dbp5 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=dbp5 PE=3 SV=1
Length=470

 Score = 262 bits (670),  Expect = 2e-78, Method: Composition-based stats.
 Identities = 98/462 (21%), Positives = 177/462 (38%), Gaps = 85/462 (18%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             + LG+   I   +          ++   L    G            +A S++  G    
Sbjct  71   FEQLGIDASILKGLYAMNFKKPSKIQEKALPLLLGNPP------TNMIAQSQSGTGKTAA  124

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
               +  +++  +K  P  P+AL + PSRELA Q    ++   ++++   L     I G  
Sbjct  125  FVITILSRLDFSK--PTTPQALCLAPSRELARQIEGVVRSIGQFVEG--LSVQAAIPGAV  180

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLS-QGYSDFINRM  387
             R+          ++VGTPG + DL+    ++ SQ++ L LDEAD +L  QG  D   R+
Sbjct  181  ERN----ARVNAMVIVGTPGTVMDLIKRKSIDASQMKVLCLDEADNMLDQQGLGDQCLRV  236

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
             + I       K  Q+++ SAT    +V   +++       + LK ++     +  + + 
Sbjct  237  KSMI-------KVEQILLFSATFPD-EVYGFAQQFSPRANEIKLKRDELTVSGIKQMFMD  288

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
               +                                         K E  V+      + 
Sbjct  289  CPNEVG---------------------------------------KYEILVKLYGLMTIG  309

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
             +IIF + +    ++ +    +G              +HG  +  ER   LE F++G  +
Sbjct  310  SSIIFVKRRDTASHIAERLTAEG---------HKVAAIHGAFEGAERDTVLEDFRQGKAK  360

Query  568  FLICTDVAARGIDIHGVPYVINVTLP--------DEKQNYVHRIGRVGRAERMGLAISLV  619
             LI T+V ARGID+  V  VIN  +P         + + Y+HRIGR GR  R+G++IS V
Sbjct  361  VLITTNVLARGIDVQSVSMVINYDIPMKGRSDFEPDPETYLHRIGRTGRFGRVGVSISFV  420

Query  620  ATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE  661
               K         +  K  ++  +         ++E + + +
Sbjct  421  FDRKSY------DALNKIAHHYNIDLIKLNQDDWDETEEIVK  456


 Score = 80.9 bits (198),  Expect = 9e-15, Method: Composition-based stats.
 Identities = 23/116 (20%), Positives = 52/116 (45%), Gaps = 10/116 (9%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            +  F ++G+   I + +  M++  P+ IQ +++PL+LG    +++  +++G+GKT AF I
Sbjct  68   VDTFEQLGIDASILKGLYAMNFKKPSKIQEKALPLLLGNPPTNMIAQSQSGTGKTAAFVI  127

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSR  114
             ++  +        +  K  T      +   +          +     +GL  Q+ 
Sbjct  128  TILSRL--------DFSKPTTPQALCLAPSRELARQIEGVVRSIGQFVEGLSVQAA  175


>sp|A3LNR6|HAS1_PICST ATP-dependent RNA helicase HAS1 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=HAS1 PE=3 SV=2
Length=567

 Score = 265 bits (677),  Expect = 2e-78, Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 156/423 (37%), Gaps = 75/423 (18%)

Query  228  FPACVLKNAELKF--NFGEEEFKFPPKDGFVAL---------SKAPDGYIVKSQHSGNAQ  276
            F    L    ++   + G +            L         +K   G  +         
Sbjct  105  FEDAGLSEPTMRAISDMGFKTMTKVQAKTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEL  164

Query  277  VTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
            +   KF P N    ++V P+RELA Q     ++   +         ++IGG   R +   
Sbjct  165  LYSLKFKPRNGTGVIVVSPTRELALQIFGVARELMAHHTQT---FGIVIGGANRRQEAEK  221

Query  336  LENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV  394
            L  GV++++ TPGRL D + +T       ++ LV+DEAD +L  G+ + + ++   +P+ 
Sbjct  222  LAKGVNLLIATPGRLLDHLQNTQGFVFKNLKALVIDEADRILEIGFEEEMKQIIKILPK-  280

Query  395  TSDGKRLQVIVCSATLHSFDVKKLSEKIMH-FPTWVDLKGED--SVPDTVHHVVVPVNPK  451
                +  Q ++ SAT  +  V+ L+   +   P ++++  E   S  D +    V  +  
Sbjct  281  ----EERQSMLFSAT-QTTKVEDLARISLRPGPLYINVVPETAASTADGLEQGYVVCDSD  335

Query  452  TDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAII  511
                                                     +       +K++   + I+
Sbjct  336  K----------------------------------------RFLLLFSFLKKYSKKKIIV  355

Query  512  FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLIC  571
            F  +        +                  + LHG +K  +R      F       L+C
Sbjct  356  FLSSCNSVKYFGELL---------NYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGTLVC  406

Query  572  TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER-MGLAISLVATEKEKVWYHV  630
            TDVAARG+DI  V ++I    PD+ ++Y+HR+GR  R     G ++  +   +     ++
Sbjct  407  TDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGSNGKGKSLMFLTPSELGFLRYL  466

Query  631  CSS  633
             ++
Sbjct  467  KAA  469


 Score = 105 bits (263),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 49/93 (53%), Gaps = 5/93 (5%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F + G+     +A+ +M +   T +QA++IP +L G DVL AA+TGSGKT AF IP I++
Sbjct  105  FEDAGLSEPTMRAISDMGFKTMTKVQAKTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEL  164

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
            +Y      + G     T     S   +  +  +
Sbjct  165  LYSLKFKPRNG-----TGVIVVSPTRELALQIF  192


>sp|Q9LIH9|RH51_ARATH DEAD-box ATP-dependent RNA helicase 51 OS=Arabidopsis 
thaliana OX=3702 GN=RH51 PE=2 SV=1
Length=568

 Score = 265 bits (676),  Expect = 3e-78, Method: Composition-based stats.
 Identities = 87/443 (20%), Positives = 166/443 (37%), Gaps = 77/443 (17%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGF------------V  256
            G+D      +   +     F +  L   +      E  F++  +               +
Sbjct  72   GEDEKNIVIVGKGIMTNVTFDSLDLSE-QTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVL  130

Query  257  ALSKAPDGYIVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDN  315
              ++   G  +         + + +F P N    +++ P+RELA QT N  ++  K+   
Sbjct  131  GAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQ  190

Query  316  PKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADG  374
                  ++IGG   R +   + +G ++V+ TPGRL D + +T       ++ LV+DEAD 
Sbjct  191  T---VSMVIGGNNRRSEAQRIASGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADR  247

Query  375  LLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG-  433
            +L + + + +N++   +P      K  Q  + SAT  +  VK L+   +  P  VD+   
Sbjct  248  ILEENFEEDMNKILKILP------KTRQTALFSAT-QTSKVKDLARVSLTSPVHVDVDDG  300

Query  434  -EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKIL  492
                  + +      V  K   +                                     
Sbjct  301  RRKVTNEGLEQGYCVVPSKQRLIL------------------------------------  324

Query  493  KGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPH  552
                 +  +K++   + ++F  T        +           K        +HG    +
Sbjct  325  ----LISFLKKNLNKKIMVFFSTCKSVQFHTEIM---------KISDVDVSDIHGGMDQN  371

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA-ER  611
             R +    F K     L+CTDVAARG+DI  V ++I    PD+   Y+HR+GR  R    
Sbjct  372  RRTKTFFDFMKAKKGILLCTDVAARGLDIPSVDWIIQYDPPDKPTEYIHRVGRTARGEGA  431

Query  612  MGLAISLVATEKEKVWYHVCSSR  634
             G A+ ++  E+ +   ++ +++
Sbjct  432  KGKALLVLIPEELQFIRYLKAAK  454


 Score = 93.7 bits (231),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 29/92 (32%), Positives = 46/92 (50%), Gaps = 5/92 (5%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F  + +  + + A++EM +   T IQA SI  +L G DVL AA TGSGKT AF IP ++
Sbjct  90   TFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVE  149

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
            ++++     + G     T         +  + 
Sbjct  150  LLFKERFSPRNG-----TGVIVICPTRELAIQ  176


>sp|Q6C7D2|HAS1_YARLI ATP-dependent RNA helicase HAS1 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=HAS1 PE=3 
SV=1
Length=605

 Score = 265 bits (678),  Expect = 4e-78, Method: Composition-based stats.
 Identities = 79/393 (20%), Positives = 147/393 (37%), Gaps = 64/393 (16%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNN  305
                     +  +K   G  +         + + KF P N    ++V P+RELA Q    
Sbjct  163  PPLLAGRDVLGAAKTGSGKTLAFLIPAIEMLRKLKFKPRNGTGVIVVSPTRELALQIYGV  222

Query  306  IKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQV  364
             +     + N      ++IGG   R +   L  GV+++V TPGRL D + ++       +
Sbjct  223  ARDL---MANHSQTLGIVIGGNNRRQEEEKLNKGVNLLVCTPGRLLDHLQNSQGFVFKNL  279

Query  365  RFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH  424
            + L++DEAD +L  G+   +  +   +P      K  Q ++ SAT  +  V+ L+   + 
Sbjct  280  KALIIDEADRILEIGFEQEMKEIIKILP------KERQSMLFSAT-QTTKVEDLARISLK  332

Query  425  F-PTWVDLKGED--SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANS  481
              P ++++   +  S  + +    V  +                                
Sbjct  333  KGPLYLNVDEHNVSSTAEGLEQGYVVCDSDK-----------------------------  363

Query  482  PEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFS  541
                       +       +K +   + I+F  +        +                 
Sbjct  364  -----------RFLLLFSFLKRNAGKKIIVFLSSCNSVKFYGELL---------NYIDLP  403

Query  542  CVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH  601
             + LHG +K  +R      F       LICTDVAARG+DI  V ++I    PD+ ++Y+H
Sbjct  404  VLDLHGKQKQQKRTNTFFEFINAKQGVLICTDVAARGLDIPKVDWIIQFDPPDDPRDYIH  463

Query  602  RIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            R+GR  R    G +I  +   +     ++ +++
Sbjct  464  RVGRTARGSASGKSIMFLTPSELGFLRYLKAAK  496


 Score = 106 bits (264),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 49/93 (53%), Gaps = 5/93 (5%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS + +     Q++++M +   T +Q ++IP +L G DVL AA+TGSGKT AF IP I++
Sbjct  133  FSTIPLSENTMQSLKDMGFETMTPVQEKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEM  192

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
            + +     + G     T     S   +  +  Y
Sbjct  193  LRKLKFKPRNG-----TGVIVVSPTRELALQIY  220


>sp|Q9UMR2|DD19B_HUMAN ATP-dependent RNA helicase DDX19B OS=Homo 
sapiens OX=9606 GN=DDX19B PE=1 SV=1
Length=479

 Score = 261 bits (668),  Expect = 5e-78, Method: Composition-based stats.
 Identities = 112/467 (24%), Positives = 188/467 (40%), Gaps = 109/467 (23%)

Query  228  FPACVLKNAELKFNFG---EEEFKFPPKDGFVALSKAPDGYIVKSQHSGN-------AQV  277
            F    LK   L+  +        K       + L++ P   I +SQ           A +
Sbjct  94   FEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML  153

Query  278  TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE  337
            +Q +     P+ L + P+ ELA QT   I+Q  K+   P+L+    + G        + E
Sbjct  154  SQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFY--PELKLAYAVRGNKLERGQKISE  211

Query  338  NGVDIVVGTPGRLDDLVST-GKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVT  395
                IV+GTPG + D  S    ++  +++  VLDEAD ++ +QG+ D   R+   +P   
Sbjct  212  ---QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP---  265

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL  455
               +  Q+++ SAT     V K ++K++  P  + LK E+   DT+    V  + + ++ 
Sbjct  266  ---RNCQMLLFSATFED-SVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKF  321

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRT  515
                                              + L   Y    I      QA+IFC T
Sbjct  322  ----------------------------------QALCNLYGAITIA-----QAMIFCHT  342

Query  516  KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA  575
            +     L     ++G              L G+    +R   +ERF++G  + L+ T+V 
Sbjct  343  RKTASWLAAELSKEG---------HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVC  393

Query  576  ARGIDIHGVPYVINVTLP------DEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            ARGID+  V  VIN  LP       + + Y+HRIGR GR  + GLA+++V ++       
Sbjct  394  ARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK-------  446

Query  630  VCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPD  676
                                    + M +L+ I+EH N  I +++ D
Sbjct  447  ------------------------HSMNILNRIQEHFNKKIERLDTD  469


 Score = 86.3 bits (212),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 59/149 (40%), Gaps = 3/149 (2%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            + +F E+ + P++ Q V  M +  P+ IQ  ++PL+L     +++  +++G+GKT AF +
Sbjct  91   VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL  150

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKE  118
             ++  V    K  Q      T      +     QM  +      A    G   +  +   
Sbjct  151  AMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKIS  210

Query  119  WHGCRATKGLMKGKHYYEVSCHDQGLCRV  147
                  T G +      ++   D    +V
Sbjct  211  EQIVIGTPGTVLD-WCSKLKFIDPKKIKV  238


>sp|Q84T03|RH27_ORYSJ DEAD-box ATP-dependent RNA helicase 27 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os03g0802700 PE=3 
SV=1
Length=590

 Score = 264 bits (675),  Expect = 6e-78, Method: Composition-based stats.
 Identities = 93/409 (23%), Positives = 170/409 (42%), Gaps = 54/409 (13%)

Query  256  VALSKAPDGYIVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYID  314
            +  +K   G  +         +    F+P N    ++V P+RELA QT N  K+  KY  
Sbjct  137  MGAAKTGSGKTLAFLIPAIEMLHHAHFMPRNGTGVVVVCPTRELAIQTHNVAKELMKYHS  196

Query  315  NPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEAD  373
                    IIGG   R +   L  GV+++V TPGRL D + +T      +++ L++DEAD
Sbjct  197  QTL---GYIIGGNGRRGEADQLAKGVNLLVATPGRLLDHLQNTKGFIYRRLKCLIIDEAD  253

Query  374  GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG  433
             LL Q + + + ++  ++P         Q ++ SAT  +  VK+ ++           K 
Sbjct  254  RLLEQNFEEDMKQIFKRLPL------NRQTVLFSAT-QTEQVKEFAKLSFE-------KN  299

Query  434  EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK  493
            E+S    V   V   + +T+   E L + +   D                         +
Sbjct  300  EESTSKPV--YVGVDDAETNATVEGLQQGYCVIDSAR----------------------R  335

Query  494  GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
                   +K+ +  + ++F  +        +              Q  C  +HG +K  +
Sbjct  336  FLVLYAFLKKKQNKKVMVFFSSCNSVKFHAELL---------NFLQIECSDIHGKQKQQK  386

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER-M  612
            R      F K +   L+CT+VAARG+DI  V +++    PDE ++Y+HR+GR  R E+  
Sbjct  387  RTTTFFNFCKAEKGILLCTNVAARGLDIPDVDFIVQYDPPDEPKDYIHRVGRTARGEKGK  446

Query  613  GLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE  661
            G A+  +  ++ K   ++ +++          E+    +  +   ++ E
Sbjct  447  GEALLFLLPQELKFLIYLKAAKI-SLTELVFNENKVPNLQSHLENIVGE  494


 Score = 99.4 bits (246),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 35/99 (35%), Positives = 52/99 (53%), Gaps = 5/99 (5%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FSE+GV    A+A+ EM++   T IQA SIP +L G DV+ AA+TGSGKT AF IP I++
Sbjct  98   FSELGVSEPTARAIREMNYTYLTQIQARSIPHLLNGKDVMGAAKTGSGKTLAFLIPAIEM  157

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            ++      + G     T         +  +  ++     
Sbjct  158  LHHAHFMPRNG-----TGVVVVCPTRELAIQTHNVAKEL  191


>sp|Q9NUU7|DD19A_HUMAN ATP-dependent RNA helicase DDX19A OS=Homo 
sapiens OX=9606 GN=DDX19A PE=1 SV=1
Length=478

 Score = 261 bits (667),  Expect = 7e-78, Method: Composition-based stats.
 Identities = 111/467 (24%), Positives = 188/467 (40%), Gaps = 109/467 (23%)

Query  228  FPACVLKNAELKFNFG---EEEFKFPPKDGFVALSKAPDGYIVKSQHSGN-------AQV  277
            F    LK   L+  +        K       + L++ P   I +SQ           A +
Sbjct  93   FEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAML  152

Query  278  TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE  337
            ++ +     P+ L + P+ ELA QT   I+Q  K+   P+L+    + G        + E
Sbjct  153  SRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFY--PELKLAYAVRGNKLERGQKISE  210

Query  338  NGVDIVVGTPGRLDDLVST-GKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVT  395
                IV+GTPG + D  S    ++  +++  VLDEAD ++ +QG+ D   R+   +P   
Sbjct  211  ---QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP---  264

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL  455
               +  Q+++ SAT     V K ++K++  P  + LK E+   DT+    V  + + ++ 
Sbjct  265  ---RNCQMLLFSATFED-SVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKF  320

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRT  515
                                              + L   Y    I      QA+IFC T
Sbjct  321  ----------------------------------QALCNLYGAITIA-----QAMIFCHT  341

Query  516  KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA  575
            +     L     ++G              L G+    +R   +ERF++G  + L+ T+V 
Sbjct  342  RKTASWLAAELSKEG---------HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVC  392

Query  576  ARGIDIHGVPYVINVTLP------DEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            ARGID+  V  VIN  LP       + + Y+HRIGR GR  + GLA+++V ++       
Sbjct  393  ARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK-------  445

Query  630  VCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPD  676
                                    + M +L+ I+EH N  I +++ D
Sbjct  446  ------------------------HSMNILNRIQEHFNKKIERLDTD  468


 Score = 84.4 bits (207),  Expect = 8e-16, Method: Composition-based stats.
 Identities = 28/149 (19%), Positives = 60/149 (40%), Gaps = 3/149 (2%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            + +F E+ + P++ Q V  M +  P+ IQ  ++P++L     +++  +++G+GKT AF +
Sbjct  90   VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVL  149

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKE  118
             ++  V  + +  Q      T      +     QM  +      A    G   +  +   
Sbjct  150  AMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKIS  209

Query  119  WHGCRATKGLMKGKHYYEVSCHDQGLCRV  147
                  T G +      ++   D    +V
Sbjct  210  EQIVIGTPGTVLD-WCSKLKFIDPKKIKV  237


>sp|Q0E2Z7|RH41_ORYSJ DEAD-box ATP-dependent RNA helicase 41 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os02g0201900 PE=2 
SV=2
Length=536

 Score = 263 bits (671),  Expect = 7e-78, Method: Composition-based stats.
 Identities = 97/440 (22%), Positives = 175/440 (40%), Gaps = 73/440 (17%)

Query  197  DIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFV  256
            D+    + FS +G    L      +++         ++   +                 +
Sbjct  131  DVPDPIMCFSSSGLPEKLVL----NLEAAGYVMPTPVQMQVIP--------SSICNRSLL  178

Query  257  ALSKAPDGYIVKSQHSGNAQVTQTK----FLPNAPKALIVEPSRELAEQTLNNIKQFKKY  312
              +    G          A  +  +         P A+++ P+REL  Q     K   K 
Sbjct  179  VSADTGSGKTASFLVPIIAHCSHVRSERCTDKQGPLAIVLAPTRELCLQVEEQAKVLGKG  238

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
            +     +  L++GG     Q+  +ENG++++VGTPGRL DL+    ++L++V   VLDE 
Sbjct  239  LP---FKTALVVGGDPLAQQIYRIENGIELIVGTPGRLIDLLMKHNVDLNKVDVFVLDEV  295

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D LL +G+ D + ++   +          QV++ SAT++S +V+K+S  +      +   
Sbjct  296  DCLLERGFRDQVMQIFQAL-------SHPQVMMFSATVNS-EVEKMSNSLAKNAIHISCG  347

Query  433  GEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKIL  492
                   +V  VV+ V  K  +                                      
Sbjct  348  NPSRPNKSVKQVVIWVESKQKK--------------------------------------  369

Query  493  KGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPH  552
            +  + +   K+H    A++F  ++I  D L +      G           V +HGD+  +
Sbjct  370  QKIFEIMTSKQHFKPPAVVFVSSRIGADLLSEAITVATG--------LKVVSIHGDKTMN  421

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM  612
            ER+++L RF  G+V  ++CT V  RG+D+  V  VI   +P+    YVH++GR  R    
Sbjct  422  ERRESLRRFLTGEVSVVVCTGVLGRGMDLLKVRQVILFDMPNSIDEYVHQVGRASRMGVE  481

Query  613  GLAISLVATEKEKVWYHVCS  632
            G+AI  V  E   ++  +  
Sbjct  482  GMAIVFVNEEDRNLFRELVQ  501


 Score = 94.4 bits (233),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 57/370 (15%), Positives = 120/370 (32%), Gaps = 56/370 (15%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  FS  G+  ++   +E   +++PT +Q + IP  +    +L++A+TGSGKT +F +P+
Sbjct  136  IMCFSSSGLPEKLVLNLEAAGYVMPTPVQMQVIPSSICNRSLLVSADTGSGKTASFLVPI  195

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120
            I        ++   K+G   I    +   +  +   ++      G       +  V    
Sbjct  196  IAHCSHVRSERCTDKQGPLAI--VLAPTRELCLQVEEQAKVLGKGLP--FKTALVVGGDP  251

Query  121  GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD  180
              +    +  G    E+     G  R+    M+ ++DL                 NK   
Sbjct  252  LAQQIYRIENGI---ELIVGTPG--RLIDLLMKHNVDL-----------------NKV--  287

Query  181  NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLA-FEIPPHMKNQALFPACVLKNAELK  239
                     D       +D+      +  +D  +  F+   H +          +  ++ 
Sbjct  288  ---------DVFV----LDEVDCLLERGFRDQVMQIFQALSHPQVMMFSATVNSEVEKMS  334

Query  240  FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN--APKALIVEPSRE  297
             +  +        +            I         ++ +         P A++   SR 
Sbjct  335  NSLAKNAIHISCGNPSRPNKSVKQVVIWVESKQKKQKIFEIMTSKQHFKPPAVVFVSSR-  393

Query  298  LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGTP--GRLD  351
                   ++   +       L+ + I G     ++   L       V +VV T   GR  
Sbjct  394  ----IGADLLS-EAITVATGLKVVSIHGDKTMNERRESLRRFLTGEVSVVVCTGVLGRGM  448

Query  352  DLVSTGKLNL  361
            DL+   ++ L
Sbjct  449  DLLKVRQVIL  458


>sp|Q0DLB9|RH17_ORYSJ DEAD-box ATP-dependent RNA helicase 17 OS=Oryza 
sativa subsp. japonica OX=39947 GN=RH17 PE=2 SV=2
Length=591

 Score = 264 bits (675),  Expect = 7e-78, Method: Composition-based stats.
 Identities = 111/571 (19%), Positives = 195/571 (34%), Gaps = 57/571 (10%)

Query  208  NGKDLGLAFEIPPHMKNQALFPAC-----VLKNAELKFNFGEEEFKFPPKDGFVALSKAP  262
              K LG +  +      + LF +C      L          +  F+ P +    A+  A 
Sbjct  1    MAKKLGKSP-VAKEEDKEGLFASCSFTDLGLHPTLCAHLQDKMGFQAPTRIQAQAIPVAM  59

Query  263  DG---YIVKSQHSGNAQVTQTKFLP------------NAPKALIVEPSRELAEQTLNNIK  307
             G    +  +  +G         +             +   AL++ P+REL  Q     +
Sbjct  60   SGQHMLVKAATGTGKTLAYLAPIVHLLQMREPRVERTDGTFALVLVPTRELCLQVYGIAQ  119

Query  308  QFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVS-TGKLNLSQVRF  366
            Q         L    I+GG     + + L  G+ I++ TPGRL D +  T       +R+
Sbjct  120  QLVH--RFHWLVPGYIMGGENRAKEKARLRKGISILIATPGRLLDHLQHTSSFVYPNMRW  177

Query  367  LVLDEADGLLSQGYSDFINRMHNQI---------PQVTSDGKRLQVIVCSATLHSFDVKK  417
            +V DEAD +L  G+   +  +   +          +   +  + Q ++ SATL+   V +
Sbjct  178  IVFDEADSILELGFGKALEDILEHLGSRNDTSNQNKNKMEPMKRQNLLLSATLN-EKVNR  236

Query  418  LSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRP  477
            L++  +  P  + L  ++S     +H  +  + + + L +         DD         
Sbjct  237  LAKISLKNPVMIGLDEQNSSAHGKNHTSLLSDDEEEILEKHNVTVEQAVDDFKLPAQLVQ  296

Query  478  GANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGP----  533
                    S    +L         +     + ++F  T    D       Q    P    
Sbjct  297  RYVKVSCGSRLAILL--TILKSLFERQLSHKVVVFLSTCDSVDFHHTVLSQLEWSPGLQL  354

Query  534  --DKKGHQFSC--VCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVIN  589
              DKK    SC    LHG+    +RK++   F       L+ TDVAARG+D   V  +I 
Sbjct  355  DTDKKQKFISCKVFRLHGNMDQDDRKKSFLGFSSEKSAILVSTDVAARGLDFPKVKCIIQ  414

Query  590  VTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGC  649
               P E   YVHR+GR  R    G A+  +   +      +      G   T        
Sbjct  415  YDSPGEASEYVHRVGRTARIGEKGEALLFLQPIETDYLRDLELH---GASLTEYPLQKVL  471

Query  650  TIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILA  709
              +    Q L +  + ++  +      ++  ++ F       +K A          D   
Sbjct  472  DSFPVNGQRLHK-RKQISLDMHPWIMSLQRALESFVTSEDTTKKLAR---------DAFC  521

Query  710  PTVQELAALEKEAQTSFLHLGYLPNQLFRTF  740
              V+   A   E +  F+        + R+F
Sbjct  522  SWVRAYTAHRGELKKIFMVKKLHLGHVARSF  552


 Score = 89.0 bits (219),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 53/95 (56%), Gaps = 4/95 (4%)

Query  3    AFSEMGVMPEIAQAV-EEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            +F+++G+ P +   + ++M +  PT IQA++IP+ + G  +L+ A TG+GKT A+  P++
Sbjct  24   SFTDLGLHPTLCAHLQDKMGFQAPTRIQAQAIPVAMSGQHMLVKAATGTGKTLAYLAPIV  83

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
             ++   +++ +  ++   T         +  +  Y
Sbjct  84   HLL--QMREPRV-ERTDGTFALVLVPTRELCLQVY  115


>sp|A4R8G3|DBP8_PYRO7 ATP-dependent RNA helicase DBP8 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=DBP8 PE=3 SV=3
Length=579

 Score = 264 bits (674),  Expect = 8e-78, Method: Composition-based stats.
 Identities = 104/435 (24%), Positives = 165/435 (38%), Gaps = 64/435 (15%)

Query  259  SKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKL  318
            S+   G  +        +  Q    P+A  A+++  +RELA Q     +QFK       L
Sbjct  192  SRTGSGKTIAFAVPILQKYAQD---PSAIFAVVLTATRELALQIY---EQFKAVSSPHVL  245

Query  319  RELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN----LSQVRFLVLDEADG  374
            +  LIIGG   R Q   L     IV+ TPGRL D + +   +    L +V+FLVLDEAD 
Sbjct  246  KAALIIGGSDMRSQAIALAQRPSIVIATPGRLADHIRSSGEDTICGLRRVKFLVLDEADR  305

Query  375  LLS-QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG  433
            LLS +G    +  +   +  V    +  Q ++ +AT+               P    LK 
Sbjct  306  LLSSKGPGSMLPHIDECM-AVLPPPEDRQTLLFTATVT--------------PEVRALKE  350

Query  434  EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK  493
              + P      V  V+ +   + + L +S+I+    H +                     
Sbjct  351  MPTRPGKEPVHVCEVDTQVLAIPDSLKQSYIQLTVTHREHFLHEFL--------------  396

Query  494  GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
                      +     IIF                       +        LH   +  +
Sbjct  397  ------LTAANTERSIIIFVNRTSTAQF---------LHHLLRLLDHRVTSLHSKLRQQQ  441

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
            R  NL RF+    R L+ TDVA+RG+DI  V  V+N  LP +  +Y+HR+GR  RA R G
Sbjct  442  RIDNLGRFRASAARILVATDVASRGLDIPEVSVVVNYDLPRDPDDYIHRVGRTARAGRKG  501

Query  614  LAISLVATEKEKVWYHVCSSRGKGCY---------NTRLKEDGGCTIWYNEMQLLSEIEE  664
             A++ V     ++   +    G+             TR+  D    +   + + L  IEE
Sbjct  502  EAVNFVGQRDVELVLAIEKRVGRPMEKWEEEGVNLETRVIRDSLKLVSEKKREALLNIEE  561

Query  665  HLNCTISQVEPDIKV  679
            +      +    +K+
Sbjct  562  NREVGGRRKRQKLKL  576


 Score = 91.3 bits (225),  Expect = 8e-18, Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 45/103 (44%), Gaps = 9/103 (9%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F  +GV P + Q++  +    PT IQ   I  IL G D +  + TGSGKT AF++P++
Sbjct  148  TTFESLGVEPWLVQSLANLAVKRPTGIQKGCIGEILKGRDCIGGSRTGSGKTIAFAVPIL  207

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
                     Q+  +          +   +  +  Y++  A + 
Sbjct  208  ---------QKYAQDPSAIFAVVLTATRELALQIYEQFKAVSS  241


>sp|A1CTZ2|DBP4_ASPCL ATP-dependent RNA helicase dbp4 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp4 PE=3 SV=1
Length=823

 Score = 270 bits (689),  Expect = 9e-78, Method: Composition-based stats.
 Identities = 96/463 (21%), Positives = 172/463 (37%), Gaps = 78/463 (17%)

Query  195  YLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDG  254
             LD+ +    FS    DL L+      + +        +++  +                
Sbjct  41   GLDLKESFESFS----DLPLSEPTLSGLTSSHFKTLTDIQSRAISHAL--------KGRD  88

Query  255  FVALSKAPDGYIVKSQHSGNAQVTQTKFLPN-APKALIVEPSRELAEQTLNNIKQFKKYI  313
             +  +K   G  +         + + ++  +    ALI+ P+RELA Q    +++  +Y 
Sbjct  89   VLGAAKTGSGKTLAFLVPVLENLYRRQWAEHDGLGALILSPTRELAIQIFEVLRKIGRY-  147

Query  314  DNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEA  372
                    L+IGG + R++   L   ++I+V TPGR L  L  T   +   ++ LVLDEA
Sbjct  148  --HTFSAGLVIGGKSLREEQERL-GRMNILVCTPGRMLQHLDQTALFDTYNLQMLVLDEA  204

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D +L  G+   ++ +   +P      K  Q ++ SAT  +  V  L+   +  P +V + 
Sbjct  205  DRILDLGFQQTVDAIVGHLP------KERQTLLFSAT-QTKKVSDLARLSLRDPEYVAVH  257

Query  433  GEDSV----PDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEA  488
               S         H+V+ P+  K D LW                                
Sbjct  258  ETASTATPAKLQQHYVIAPLPQKLDILWS-------------------------------  286

Query  489  IKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGD  548
                        I+ +   + ++F  +      + + F     G          + LHG 
Sbjct  287  -----------FIRSNLKSKTMVFFSSGKQVRFVYESFRHMQPG-------IPLMHLHGR  328

Query  549  RKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
            +K   R   +  F +     L  TDVAARG+D   V +VI +  P++   Y+HR+GR  R
Sbjct  329  QKQGGRLDIMTNFSQAKHCVLFSTDVAARGLDFPAVDWVIQMDCPEDADTYIHRVGRTAR  388

Query  609  AERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTI  651
              R G A+  +   +E+        +        +K +   +I
Sbjct  389  YGRDGRAVLFLDPSEEEGMLKRLEQKKVPIEKINIKANKQQSI  431


 Score = 94.8 bits (234),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 27/101 (27%), Positives = 46/101 (46%), Gaps = 5/101 (5%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +FS++ +       +    +   TDIQ+ +I   L G DVL AA+TGSGKT AF +PV++
Sbjct  50   SFSDLPLSEPTLSGLTSSHFKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPVLE  109

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
             +Y     + +G           S   +  +  ++      
Sbjct  110  NLYRRQWAEHDG-----LGALILSPTRELAIQIFEVLRKIG  145


>sp|Q0J7Y8|RH45_ORYSJ DEAD-box ATP-dependent RNA helicase 45 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os08g0154200 PE=3 
SV=2
Length=947

 Score = 272 bits (694),  Expect = 1e-77, Method: Composition-based stats.
 Identities = 102/498 (20%), Positives = 175/498 (35%), Gaps = 128/498 (26%)

Query  210  KDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKS  269
               GL  ++   +K         ++   L                 + ++K   G  +  
Sbjct  288  VQSGLTSKLLDTIKKLGFEKPMPIQAQALPIIMS--------GRDCIGIAKTGSGKTLAF  339

Query  270  QHSGNAQVTQTKFLP-----NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
                   +   K  P     + P  LI+ P+REL  Q  ++IK+F K   +  +  + I 
Sbjct  340  VL---PMLRHVKDQPPVVPGDGPIGLIMAPTRELVVQIHSDIKKFAK---SLGINCVAIY  393

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLV---STGKLNLSQVRFLVLDEADGLLSQGYS  381
            GG     Q+S L+ G +IVV TPGR+ D++   S    NL +V FLV+DEAD +   G+ 
Sbjct  394  GGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFE  453

Query  382  DFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV  441
              I R+        +     Q ++ SA      V+ L+ K++  P  + + G   V   +
Sbjct  454  PQITRIVQ------NTRPDRQTVLFSAIFP-RQVEILARKVLTKPVEIQVGGRSVVNKDI  506

Query  442  HHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI  501
              +V         L                                              
Sbjct  507  TQLVEVRPENERFLRLLELLGEWFDR----------------------------------  532

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
                  + ++F  ++  CD+L +   Q+G         + C+ LHG +   +R+  L  F
Sbjct  533  -----GKILVFVHSQDKCDSLLKDLFQRG---------YPCLSLHGGKDQTDRESTLADF  578

Query  562  KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT  621
            K                     +  V+N  +P+  ++YVHR+GR G A R G A++ ++ 
Sbjct  579  K-------------------SNLELVVNYDVPNHYEDYVHRVGRTGHAGRKGFAVTFISD  619

Query  622  EKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPV  681
            E+E+    +  +                                L  +   V  D+K   
Sbjct  620  EEERYAPDLAKA--------------------------------LELSEQAVPQDLKGLA  647

Query  682  DEFDGKVTYGQKRAAGGG  699
            D F  KV  G ++A G G
Sbjct  648  DRFMAKVKQGTEQAHGTG  665


 Score = 116 bits (290),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 66/154 (43%), Gaps = 20/154 (13%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  + + G+  ++   ++++ +  P  IQA+++P+I+ G D +  A+TGSGKT AF +P+
Sbjct  284  IKTWVQSGLTSKLLDTIKKLGFEKPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPM  343

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI----------GSDGLC  110
            ++ V    KDQ     G   I    +   +  +  +     FA           G  G+ 
Sbjct  344  LRHV----KDQPPVVPGDGPIGLIMAPTRELVVQIHSDIKKFAKSLGINCVAIYGGSGVA  399

Query  111  CQSREVKE-WHGCRATKGLMKGKHYYEVSCHDQG  143
             Q  E+K        T G        ++ C   G
Sbjct  400  QQISELKRGAEIVVCTPGR-----MIDILCTSSG  428


>sp|Q1EB31|DBP4_COCIM ATP-dependent RNA helicase DBP4 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DBP4 PE=3 SV=1
Length=806

 Score = 269 bits (687),  Expect = 1e-77, Method: Composition-based stats.
 Identities = 88/417 (21%), Positives = 161/417 (39%), Gaps = 67/417 (16%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNN  305
                     +  +K   G  +         + + ++   +   ALI+ P+RELA Q    
Sbjct  80   PHAIKGRDILGAAKTGSGKTLAFLVPVLENLYRKQWTEYDGLGALILSPTRELAIQIFEV  139

Query  306  IKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQV  364
            +++  +Y         L+IGG + +++   L   ++I+V TPGR L  +  T   + + +
Sbjct  140  LRKIGRY---HTFSAGLVIGGKSLQEEQERL-GRMNILVCTPGRMLQHMDQTAAFDTAHI  195

Query  365  RFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH  424
            + LVLDEAD ++  G+   ++ +   +P      K  Q ++ SAT  +  V  L+   + 
Sbjct  196  QMLVLDEADRIMDMGFQSTVDAIVEHLP------KERQTMLFSAT-QTKKVSDLARLSLR  248

Query  425  FPTWVDLK--GEDSVPDTVHH--VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480
             P ++ +      + P ++    VV P+  K D LW                        
Sbjct  249  DPEYISVHEAASSATPASLQQHYVVTPLPEKLDTLWS-----------------------  285

Query  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540
                                I+     + ++F  +      + + F     G        
Sbjct  286  -------------------FIRNTLKSKILVFFSSSKQVRFVYEAFRHMQPG-------I  319

Query  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600
              + LHG +K   R     +F +     L  TDVAARG+D   V +VI +  P++   Y+
Sbjct  320  PLLHLHGRQKQSARIDITSKFSRAKYSCLFSTDVAARGLDFPAVDWVIQLDCPEDADTYI  379

Query  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQ  657
            HR+GR  R ER G A+  +   +E+        +        +K     +I  N++Q
Sbjct  380  HRVGRTARYERDGRAVLFLDPSEEEGMLKRLEQKKIPIERINIKAKKQQSI-MNQLQ  435


 Score = 94.4 bits (233),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 28/101 (28%), Positives = 49/101 (49%), Gaps = 5/101 (5%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +FSE+ +     Q +    +   TDIQ+ ++P  + G D+L AA+TGSGKT AF +PV++
Sbjct  49   SFSELPLSDATLQGLSASHFKTLTDIQSRAVPHAIKGRDILGAAKTGSGKTLAFLVPVLE  108

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
             +Y   + Q     G   +    S   +  +  ++      
Sbjct  109  NLY---RKQWTEYDGLGAL--ILSPTRELAIQIFEVLRKIG  144


>sp|A7TJK8|PRP5_VANPO Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Vanderwaltozyma polyspora (strain ATCC 22028 
/ DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 
/ UCD 57-17) OX=436907 GN=PRP5 PE=3 SV=1
Length=872

 Score = 270 bits (690),  Expect = 1e-77, Method: Composition-based stats.
 Identities = 116/496 (23%), Positives = 199/496 (40%), Gaps = 74/496 (15%)

Query  233  LKNAELKFNFGEEEFKFPPKDGFVALSKAPDG----YIVKSQHSGNAQVTQTKFLPNAPK  288
            LK  E      +           + +SK   G    YI+       AQ T +K     P 
Sbjct  295  LKYDEPTAIQSQAIPAIMSGRDLIGISKTGSGKTISYILPMLRQIKAQRTLSK-NETGPL  353

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
             LI+ P+RELA Q    +++F K   +  +R +   GG   + Q++ L+ GV+IVV TPG
Sbjct  354  GLILAPTRELALQINEEVEKFTK--QDRSIRTICCTGGSEMKKQINDLKRGVEIVVATPG  411

Query  349  RLDDLV---STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            RL D++   S   ++  ++ F+V+DEAD L   G+   I ++   +          Q ++
Sbjct  412  RLIDILTLNSGKLISTKRITFVVMDEADRLFDMGFEPQITQIMKTV------RPDKQCVL  465

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT  +  ++  + +I+  P  V +   + V + V+      + + D+         + 
Sbjct  466  FSATFPN-KLRSFAARILTDPLTVTINSNNLVNENVNQSFYIEDNENDKFNRL-----VN  519

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
              D   K N    +NS E   +              +E    + IIF  ++  CD L   
Sbjct  520  ILDGFYKVNKNITSNSEEREID--------------EEVSDKKIIIFVSSQQFCDLLYSK  565

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
                G  P           +H  +   ER  NLE+FK      L+CT+V +RG+++  V 
Sbjct  566  LENFGYFP---------YTIHAGKPYQERVMNLEKFKTTTNSILLCTEVLSRGLNVPEVS  616

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
             VI          YVH  GR  R    G AI+L+  ++    Y +  +  +         
Sbjct  617  LVIIYNAAKTFAQYVHTTGRTARGTHKGDAITLLLPDELAAAYILKRALRE---------  667

Query  646  DGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHV  705
                       + LS I+        Q+  D+K   + F+  +  G+ + + G   KG  
Sbjct  668  -----------RELSSIDP-------QMVEDMKQMSERFESGMKEGKYKLSKGFGGKGLD  709

Query  706  DILAPTVQELAALEKE  721
            ++   T +E    E++
Sbjct  710  NL--DTKREEKQQEEK  723


 Score = 100 bits (250),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 79/186 (42%), Gaps = 17/186 (9%)

Query  1    MAAFSEMGVMPEIAQAV-EEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
            +  +S++G+  +I   + +E+ +  PT IQ+++IP I+ G D++  ++TGSGKT ++ +P
Sbjct  275  ITRWSQLGLPTDIMNLITKELKYDEPTAIQSQAIPAIMSGRDLIGISKTGSGKTISYILP  334

Query  60   VIQIVYETLKDQQEGKKGKT-TIKTGASVLNKWQMNPYDRGSAFAI---GSDGLCCQSRE  115
            +++ +    K Q+   K +T  +    +   +  +   +    F         +CC    
Sbjct  335  MLRQI----KAQRTLSKNETGPLGLILAPTRELALQINEEVEKFTKQDRSIRTICCTGGS  390

Query  116  VKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSH  175
              +       +G+       E+     G   +   T+ +   + T +  F       +  
Sbjct  391  EMKKQINDLKRGV-------EIVVATPGRL-IDILTLNSGKLISTKRITFVVMDEADRLF  442

Query  176  NKQFDN  181
            +  F+ 
Sbjct  443  DMGFEP  448


>sp|Q6CKI1|PRP5_KLULA Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 
GN=PRP5 PE=3 SV=1
Length=812

 Score = 269 bits (687),  Expect = 1e-77, Method: Composition-based stats.
 Identities = 115/517 (22%), Positives = 194/517 (38%), Gaps = 94/517 (18%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
             LGL+ EI   + N+       L+   L     +           + +SK   G  V   
Sbjct  249  QLGLSSEIMDLISNE-------LQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFL  301

Query  271  HSGNAQVTQTKFL---PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
                 Q+     L      P  LI+ P+RELA Q         K+     +  +  +GG 
Sbjct  302  LPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEA---LKFCKGSGISSICCVGGS  358

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFI  384
              + Q++ L+ GVDI+V TPGR  DL++      L+ +++ F+V+DEAD L   G+   +
Sbjct  359  ELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQV  418

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
            N++   I          Q ++ SAT  S  +K  + + +  P  + +  +  + + +   
Sbjct  419  NQIMGCI------RPDKQCVLFSATFPS-KLKHFASRTLKNPIQITINSKSLINENIQQR  471

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
            V                                     E   +   +LK      A+   
Sbjct  472  V---------------------------------QIFDEEHVKFEFLLKRLSDRLALHRG  498

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
            + ++ IIF  ++  CD L    +  G          +   +H  +   ER +NL++FK+ 
Sbjct  499  EDEKTIIFVGSQQLCDLLYDELLLNG---------ITTFPIHAGKPSAERLRNLQKFKET  549

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            D   LICT+V +RG+++  V  VI          YVH +GR GR    G+A+S V  ++ 
Sbjct  550  DNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHTVGRTGRGTNNGVALSFVMVDEL  609

Query  625  KVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEF  684
               Y +                    +  NE+  +  +          V   +K   DEF
Sbjct  610  ASAYILVK-----------------CMKENELSSVPMV----------VYQKLKEMNDEF  642

Query  685  DGKVTYGQKRAAGGGSYKG--HVDILAPTVQELAALE  719
               +  G+ R   G   KG  H+D L    Q     +
Sbjct  643  SSGLKTGKYRLIQGFGGKGLDHLDELNEAKQSQEYTD  679


 Score = 102 bits (255),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 44/210 (21%), Positives = 85/210 (40%), Gaps = 22/210 (10%)

Query  1    MAAFSEMGVMPEIAQAV-EEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
            +  +S++G+  EI   +  E+ ++  T IQ ++IP I+ G DV+  ++TGSGKT AF +P
Sbjct  244  VTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLP  303

Query  60   VIQIVYETLKDQQEGKKGKT-TIKTGASVLNKWQMNPYDRGSAF--AIGSDGLCCQSREV  116
            +++ +    K Q      +T  I    +   +  +   +    F    G   +CC     
Sbjct  304  LVRQI----KAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKGSGISSICCVGGSE  359

Query  117  KEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHN  176
             +       +G+       ++     G   +   T+ +   L   +  F       +  +
Sbjct  360  LKQQINELKRGV-------DIIVATPGRF-IDLMTLNSGHLLSPTRISFVVMDEADRLFD  411

Query  177  KQFDNYGEEFTMHDTIGCYLDIDKGHVKFS  206
              F        ++  +GC +  DK  V FS
Sbjct  412  LGFGP-----QVNQIMGC-IRPDKQCVLFS  435


>sp|Q0UMB9|DBP4_PHANO ATP-dependent RNA helicase DBP4 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=DBP4 PE=3 SV=1
Length=803

 Score = 268 bits (686),  Expect = 1e-77, Method: Composition-based stats.
 Identities = 97/463 (21%), Positives = 170/463 (37%), Gaps = 77/463 (17%)

Query  196  LDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGF  255
            LD   G      +  DL L+      +K         ++   +       +         
Sbjct  41   LDPKTGT---YNDFSDLPLSDPTKQGLKACHFAVMTDIQRKAVPLALKGHD--------I  89

Query  256  VALSKAPDGYIVKSQHSGNAQVTQTKFL--PNAPKALIVEPSRELAEQTLNNIKQFKKYI  313
            +  +K   G  +         + + + +       ALI+ P+RELA Q  + + +  K+ 
Sbjct  90   LGAAKTGSGKTLSFIIPVLENLYRLQHVGADAGLGALILSPTRELAIQIFDVLCKIGKH-  148

Query  314  DNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEA  372
                    L+IGG +   +   L   ++I+V TPGR L  L  T    +  ++ LVLDEA
Sbjct  149  -GHMFAAGLLIGGKSLESERQALPR-MNILVATPGRMLQHLSQTAAFLVDDLKMLVLDEA  206

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D +L  G+   ++ + + +P      K  Q ++ SAT  S  V  L+   +  P +V + 
Sbjct  207  DRILDMGFQRDVDAIIDYLP------KERQTLLFSAT-QSKKVSDLARLSLQDPEYVSVH  259

Query  433  GEDS--VPDTVHH--VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEA  488
             ED    P ++    ++ P+  K D LW  +  S                          
Sbjct  260  AEDKSATPKSLQQNYIICPLEEKLDTLWSFIQAS--------------------------  293

Query  489  IKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGD  548
                            K  + ++F  +      + + F     G          + +HG 
Sbjct  294  ----------------KKSKILVFFSSAKAVRFVYESFRHMQPG-------IPLLHIHGR  330

Query  549  RKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
            +K   R     +F       L  TDVAARG+D   V +VI V  PD+   Y+HR+GR  R
Sbjct  331  QKQGARLDTTAKFSSAKNSCLFATDVAARGLDFPAVDFVIQVDCPDDVDTYIHRVGRTAR  390

Query  609  AERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTI  651
              R G  +  +A  +E+       ++        +++    +I
Sbjct  391  YNREGRGVLFLAPSEEEGMLKRLEAKKVPVEAINVRQKKRQSI  433


 Score = 95.6 bits (236),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 29/109 (27%), Positives = 48/109 (44%), Gaps = 4/109 (4%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS++ +     Q ++   + + TDIQ +++PL L G D+L AA+TGSGKT +F IPV++ 
Sbjct  51   FSDLPLSDPTKQGLKACHFAVMTDIQRKAVPLALKGHDILGAAKTGSGKTLSFIIPVLEN  110

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQ  112
            +Y      Q             S   +  +  +D               
Sbjct  111  LYRL----QHVGADAGLGALILSPTRELAIQIFDVLCKIGKHGHMFAAG  155


>sp|A2QS00|DBP4_ASPNC ATP-dependent RNA helicase dbp4 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=dbp4 PE=3 SV=1
Length=802

 Score = 268 bits (686),  Expect = 1e-77, Method: Composition-based stats.
 Identities = 97/462 (21%), Positives = 172/462 (37%), Gaps = 78/462 (17%)

Query  196  LDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGF  255
            LD+ +   +F+    DL L+      + +        +++  +                 
Sbjct  40   LDVKETIEQFT----DLPLSEPTASGLASSHYKTLTDIQSRAISHAL--------KGRDI  87

Query  256  VALSKAPDGYIVKSQHSGNAQVTQTKFLPN-APKALIVEPSRELAEQTLNNIKQFKKYID  314
            +  +K   G  +         + + ++  +    AL++ P+RELA Q    +++  +Y  
Sbjct  88   LGAAKTGSGKTLAFLIPILENLYRKQWSEHDGLGALVLSPTRELAIQIFEVLRKVGRY--  145

Query  315  NPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEAD  373
                   L+IGG + R++   L   ++I+V TPGR L  L  T       ++ LVLDEAD
Sbjct  146  -HTFSAGLVIGGKSLREEQERL-GRMNILVCTPGRMLQHLDQTSFFETHNLQMLVLDEAD  203

Query  374  GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK-  432
             +L  G+   ++ +   +P      K  Q ++ SAT  +  V  L+   +  P +V +  
Sbjct  204  RILDMGFQKTVDAIIGHLP------KERQTLLFSAT-QTKKVSDLARLSLQDPEYVAVHE  256

Query  433  -GEDSVPDTVHH--VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAI  489
                + P  +    VV P+  K D LW                                 
Sbjct  257  AASSATPSKLQQHYVVTPLPQKLDVLWS--------------------------------  284

Query  490  KILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDR  549
                       I+ +   + I+F  +      + + F     G          + LHG +
Sbjct  285  ----------FIRSNLKSKTIVFLSSGKQVRFVYESFRHMQPG-------VPLMHLHGRQ  327

Query  550  KPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA  609
            K   R     +F       L  TDVAARG+D   V +VI +  P++   Y+HR+GR  R 
Sbjct  328  KQGGRLDITTKFSSAQHAVLFATDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARY  387

Query  610  ERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTI  651
            ER G A+  +   +EK        +        +K +   +I
Sbjct  388  ERDGRAVLFLDPSEEKGMLKRLEQKKVQVERINVKANKQQSI  429


 Score = 92.1 bits (227),  Expect = 7e-18, Method: Composition-based stats.
 Identities = 26/101 (26%), Positives = 47/101 (47%), Gaps = 5/101 (5%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F+++ +    A  +    +   TDIQ+ +I   L G D+L AA+TGSGKT AF IP+
Sbjct  46   IEQFTDLPLSEPTASGLASSHYKTLTDIQSRAISHALKGRDILGAAKTGSGKTLAFLIPI  105

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSA  101
            ++ +Y     + +G           S   +  +  ++    
Sbjct  106  LENLYRKQWSEHDG-----LGALVLSPTRELAIQIFEVLRK  141


>sp|A5DUB2|MAK5_LODEL ATP-dependent RNA helicase MAK5 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=MAK5 PE=3 SV=1
Length=855

 Score = 269 bits (688),  Expect = 2e-77, Method: Composition-based stats.
 Identities = 94/483 (19%), Positives = 181/483 (37%), Gaps = 33/483 (7%)

Query  214  LAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGF---VALSKAPDGYIVKSQ  270
            L+  I   + N        ++   +      ++       G    +A         ++S 
Sbjct  226  LSPYILNGLSNMKFTTPTPIQKRTIPLALEGKDVIGKATTGSGKTLAYGIPILEKYIQSL  285

Query  271  HSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
             +   +V +     N P  +I  P+RELA Q ++++ +  +Y        + + GG++ +
Sbjct  286  DTVKRKVREKVV--NHPTGIIFAPTRELAHQVVDHLNKIAQYSPLSTKGIVSVTGGLSIQ  343

Query  331  DQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRF---LVLDEADGLLSQGYSDFINRM  387
             Q  +L  G  I+V TPGR+ +L    +  + ++     +VLDEAD LL  G+ +   ++
Sbjct  344  KQERLLSFGPGIIVATPGRMLELCQNDQELVKRLSMTDIIVLDEADRLLQDGHFEEFEKI  403

Query  388  HNQIPQVTSDGKR-----LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH  442
                 +      +      Q +V SAT       KL ++       V   G+        
Sbjct  404  LELFNKNRPKNDKSIEWKWQTLVFSATFSRDLFGKLDKQ--QKQKSVKGNGKALNKADSG  461

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
            + +V  +   + L E+L         V A           E   E   + +  Y    + 
Sbjct  462  NSLVQNDEIIELLREKLRFKDKAPSLVDANPKEIVSGQITEALVECGPLERDLYLYYFLL  521

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
             +K    ++F  +      L                      +H      +R ++LERFK
Sbjct  522  MYK-GSTLVFANSIDSVKRLVPLLNNL---------NIPAFAIHSSMIQKQRLRSLERFK  571

Query  563  ----KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
                K     L+ +DVAARG+DI  + +V +  LP     Y+HR GR  RA + G+++  
Sbjct  572  DASEKNQTAVLVASDVAARGLDIPNIDHVAHYHLPRSADVYIHRSGRTARAGKEGVSVMF  631

Query  619  VATEKE----KVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVE  674
             + ++     +    + +S      N ++       +   EM L+S++   +       +
Sbjct  632  CSPQEASGPLRKLRKLVASNAANNKNQKINVHSDVKLLPVEMDLVSQLRPRVELAGRLAD  691

Query  675  PDI  677
             +I
Sbjct  692  SNI  694


 Score = 98.7 bits (244),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 39/141 (28%), Positives = 56/141 (40%), Gaps = 17/141 (12%)

Query  6    EMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIV-  64
            E  + P I   +  M +  PT IQ  +IPL L G DV+  A TGSGKT A+ IP+++   
Sbjct  223  ETCLSPYILNGLSNMKFTTPTPIQKRTIPLALEGKDVIGKATTGSGKTLAYGIPILEKYI  282

Query  65   --YETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA-----------IGSDGLCC  111
               +T+K +   K          +   +      D  +  A             + GL  
Sbjct  283  QSLDTVKRKVREKVVNHPTGIIFAPTRELAHQVVDHLNKIAQYSPLSTKGIVSVTGGLSI  342

Query  112  QSREVKEWHG---CRATKGLM  129
            Q +E     G     AT G M
Sbjct  343  QKQERLLSFGPGIIVATPGRM  363


>sp|Q6CGD1|DBP4_YARLI ATP-dependent RNA helicase DBP4 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP4 PE=3 
SV=1
Length=740

 Score = 266 bits (681),  Expect = 2e-77, Method: Composition-based stats.
 Identities = 88/455 (19%), Positives = 166/455 (36%), Gaps = 71/455 (16%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             ++L L+      +KN        ++   +                 +  ++   G  + 
Sbjct  41   FEELPLSEATIEGLKNSHYVTCTDVQKRAIPPAL--------QGHDLLGAARTGSGKTLA  92

Query  269  SQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
                    + + K+   +   AL++ P+RELA Q    +++  +          L+IGG 
Sbjct  93   FLVPVLECLFRNKWSDVDGLGALVISPTRELAVQIFQVLRKIGRCHS---FSAGLVIGGK  149

Query  328  AARDQLSVLENGVDIVVGTPGRLD-DLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                +   L   ++I++ TPGRL   +  T   +LS V+ LVLDEAD +L  G+   ++ 
Sbjct  150  DVAMEADRLAK-LNILICTPGRLLQHMDQTSGFDLSNVKMLVLDEADRILDMGFKKTMDA  208

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE--DSVPDTVHHV  444
            +   +P         Q ++ SAT  +  V  L+   +  P ++    +   S P  +   
Sbjct  209  ILENLPV------DRQTLLFSAT-QTKSVSDLARLSLADPKYISANPDTTSSTPKNLEQN  261

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
             V V  +                                         K +     ++ H
Sbjct  262  YVCVELQD----------------------------------------KLDTLWGFLRTH  281

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
               + I+F  +      + + F     G          + LHG +K   R   + +F K 
Sbjct  282  TKFKIIVFFSSSKQVRYVYETFRTLQPG-------IPLLHLHGKQKQGARMDVVSKFSKA  334

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
                L  TD+ ARGID   V +V+ V  P++   Y+HR+GR  R  + G A+  +   +E
Sbjct  335  SSSCLFATDIVARGIDFPAVHWVVQVDCPEDAATYIHRVGRSARFGKSGKALLFLTPTEE  394

Query  625  KVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLL  659
                    ++        ++ +   +I  N++Q L
Sbjct  395  PAMIQRLEAKHIPINKLTIRPNKKKSI-KNQLQAL  428


 Score = 97.1 bits (240),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 26/93 (28%), Positives = 47/93 (51%), Gaps = 0/93 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++ F E+ +     + ++   ++  TD+Q  +IP  L G D+L AA TGSGKT AF +PV
Sbjct  38   VSKFEELPLSEATIEGLKNSHYVTCTDVQKRAIPPALQGHDLLGAARTGSGKTLAFLVPV  97

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQM  93
            ++ ++       +G        T    +  +Q+
Sbjct  98   LECLFRNKWSDVDGLGALVISPTRELAVQIFQV  130


>sp|Q4P3W3|DBP10_USTMA ATP-dependent RNA helicase DBP10 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP10 PE=3 
SV=1
Length=1154

 Score = 273 bits (697),  Expect = 3e-77, Method: Composition-based stats.
 Identities = 99/452 (22%), Positives = 172/452 (38%), Gaps = 58/452 (13%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             + +GL   +   +  +       ++   +     +           V +++   G  + 
Sbjct  146  FQSMGLHPSLLRSLLIRGFTTPTPIQRQAIPAIMSQPP------RDVVGMARTGSGKTLA  199

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYID----------NPKL  318
                   ++          K+LI+ PSRELA Q L   K+  +                +
Sbjct  200  YLIPLINRLNGRHSPTFGIKSLILCPSRELAVQILRVGKEIARGWKADAGEGQDSRGEAI  259

Query  319  RELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQ  378
            R  +I+GG +  +Q  ++ N  D+V+ TPGR+  L     L+L  V ++V DEAD L   
Sbjct  260  RWAIIVGGESLDEQFGIMSNNPDVVIATPGRMLHLTVEMNLDLKSVEYVVFDEADRLFEM  319

Query  379  GYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVP  438
            G+++ +  M  ++P         Q ++ SATL    V+     +   P  V L  +  + 
Sbjct  320  GFAEQLEEMLLRLP------PTRQTLLFSATLPKKLVEFTKAGLQANPKLVRLDADSKIS  373

Query  439  DTVHHVVVPVNPKT----------DRLWERLGKSHIRTDDVHAKDNTRPGANSPE-MWSE  487
              +      V P            D +   LG+   R  D  A+ N     N  +   S 
Sbjct  374  ADLRMAFFSVKPSEKEAALLVLLRDVIGVPLGEQAARDLDEEAQFNEDASDNQADGQRSR  433

Query  488  AIKILKGEYAVRAIKEHKMDQ----------------AIIFCRTKIDCDNLEQYFIQQGG  531
                 + E+  +   +H  ++                 IIFC TK   +           
Sbjct  434  GYGNRRAEFKGKTKDKHLGNKRKRGGPGGALELLPHQTIIFCATKHHVEY---------L  484

Query  532  GPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT  591
                    ++C  ++       R   + RF++G    LI TDVAARGID+  + +V+N  
Sbjct  485  LLLLTTTGYACSHIYSSLDQATRGIQMSRFRRGQNSLLIVTDVAARGIDLPVLEHVVNFD  544

Query  592  LPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
             P + + +VHR+GR  RA R G A S+    +
Sbjct  545  FPPQPRTFVHRVGRTARAGRNGWAWSMCTNAE  576


 Score = 91.3 bits (225),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 37/63 (59%), Gaps = 2/63 (3%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSIPVI  61
            F  MG+ P + +++    +  PT IQ ++IP I+     DV+  A TGSGKT A+ IP+I
Sbjct  146  FQSMGLHPSLLRSLLIRGFTTPTPIQRQAIPAIMSQPPRDVVGMARTGSGKTLAYLIPLI  205

Query  62   QIV  64
              +
Sbjct  206  NRL  208


>sp|Q8TDD1|DDX54_HUMAN ATP-dependent RNA helicase DDX54 OS=Homo 
sapiens OX=9606 GN=DDX54 PE=1 SV=2
Length=881

 Score = 269 bits (687),  Expect = 4e-77, Method: Composition-based stats.
 Identities = 110/441 (25%), Positives = 170/441 (39%), Gaps = 68/441 (15%)

Query  220  PHMKNQALFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN---  274
               K    F +  L     K     G +      +     +    D   +    SG    
Sbjct  90   KKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTAC  149

Query  275  -----AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAA  329
                  +  +T       +ALI+ P+RELA QTL   K+  K+     L+  LI+GG   
Sbjct  150  FLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTG---LKTALILGGDRM  206

Query  330  RDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHN  389
             DQ + L    DI++ TPGRL  +     L L  V ++V DEAD L   G+++ +  +  
Sbjct  207  EDQFAALHENPDIIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIA  266

Query  390  QIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN  449
            ++P         Q ++ SATL    V+  +   +  P  + L  +  + + +      V 
Sbjct  267  RLPGGH------QTVLFSATLPKLLVE-FARAGLTEPVLIRLDVDTKLNEQLKTSFFLVR  319

Query  450  PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA  509
              T          H+  + V                                     DQ 
Sbjct  320  EDTKAAV----LLHLLHNVVR----------------------------------PQDQT  341

Query  510  IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL  569
            ++F  TK   + L +    Q         + SC  ++    P  RK NL +F  G    L
Sbjct  342  VVFVATKHHAEYLTELLTTQ---------RVSCAHIYSALDPTARKINLAKFTLGKCSTL  392

Query  570  ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            I TD+AARG+DI  +  VIN + P + + ++HR+GRV RA R G A SLVA ++      
Sbjct  393  IVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLD  452

Query  630  VCSSRGKGCYNTR-LKEDGGC  649
            +    G+     R LKE  G 
Sbjct  453  LHLFLGRSLTLARPLKEPSGV  473


 Score = 97.1 bits (240),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 2/89 (2%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F  MG+   + + + +  + +PT IQ ++IP+IL G DV+  A TGSGKT  F +P+ + 
Sbjct  98   FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER  157

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQ  92
            +       Q G +      T    L   +
Sbjct  158  LKTH--SAQTGARALILSPTRELALQTLK  184


>sp|Q9UTP9|DBP4_SCHPO ATP-dependent RNA helicase dbp4 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp4 
PE=1 SV=1
Length=735

 Score = 266 bits (679),  Expect = 5e-77, Method: Composition-based stats.
 Identities = 93/418 (22%), Positives = 163/418 (39%), Gaps = 66/418 (16%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFL-PNAPKALIVEPSRELAEQTLNN  305
                     +  +K   G  +         + + K+   +   AL++ P+RELA QT   
Sbjct  71   PSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFET  130

Query  306  IKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTG-KLNLSQV  364
            + +  +          LIIGG   +++   L   ++I+V TPGRL   +      + S +
Sbjct  131  LVKIGRLHS---FSAGLIIGGNNYKEEKERLSR-MNILVCTPGRLLQHIDQAVNFDTSGL  186

Query  365  RFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH  424
            + L+LDEAD +L  G+   ++ + + +P         Q ++ SAT  +  VK L+   + 
Sbjct  187  QMLILDEADRILDMGFRTTLDAIVSSLPV------HRQTMLFSAT-QTKSVKDLARLSLQ  239

Query  425  FPTWVDLKGED--SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSP  482
             P ++ +   D  S P  ++   + V                                  
Sbjct  240  NPDFISVHENDTSSTPSNLNQFYLTVPLTE------------------------------  269

Query  483  EMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSC  542
                      K +     I+ H   + I+F  +      + + F +   G        S 
Sbjct  270  ----------KLDILFGFIRTHLKFKTIVFLSSCKQVRFVYETFRRMRPG-------ISL  312

Query  543  VCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHR  602
            + LHG +K   R +   +F       L CTD+ ARG+D   V +VI +  P++   Y+HR
Sbjct  313  LHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHR  372

Query  603  IGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLK-EDGGCTIWYNEMQLL  659
            +GR  R  R G A+ L+   +E     + S   K     R+  +DG  T   N++Q L
Sbjct  373  VGRTARYNRSGNALLLLLPSEEAFLKRLES---KKIAVERINVKDGKKTSIRNQLQNL  427


 Score = 90.2 bits (222),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 60/131 (46%), Gaps = 5/131 (4%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+E+ +      A++   ++  T+IQ + IP  L G D+L AA+TGSGKT AF +P+I+ 
Sbjct  41   FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIEN  100

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQ-MNPYDRGSAFA----IGSDGLCCQSREVKE  118
            +Y       +G        T    +  ++ +    R  +F+    IG +    +   +  
Sbjct  101  LYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSR  160

Query  119  WHGCRATKGLM  129
             +    T G +
Sbjct  161  MNILVCTPGRL  171


>sp|Q2TBP1|DDX25_BOVIN ATP-dependent RNA helicase DDX25 OS=Bos 
taurus OX=9913 GN=DDX25 PE=2 SV=1
Length=483

 Score = 259 bits (661),  Expect = 5e-77, Method: Composition-based stats.
 Identities = 102/448 (23%), Positives = 176/448 (39%), Gaps = 107/448 (24%)

Query  244  EEEFKFPPKDGFVALSKAPDGYIVKSQHSGN-------AQVTQTKFLPNAPKALIVEPSR  296
                K       + L+  P   I +SQ           A +++   L   P+ L + P+ 
Sbjct  118  NRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALKLFPQCLCLAPTY  177

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDL-VS  355
            ELA QT   +++  K+     ++ +  I G        V +    IV+GTPG + D    
Sbjct  178  ELALQTGRVVERMGKFC--VDVQVMYAIRGNRIPRGTDVTK---QIVIGTPGTVLDWCFK  232

Query  356  TGKLNLSQVRFLVLDEADGLLS-QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFD  414
               ++L+++R  VLDEAD ++  QG+ D   R+   +P         Q+++ SAT     
Sbjct  233  RKLIDLTKIRVFVLDEADVMIDTQGFEDQSIRIQRALP------SECQMLLFSATFED-S  285

Query  415  VKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDN  474
            V + +E+I+  P  + L+ E+   + +    V    + D                     
Sbjct  286  VWQFAERIIPDPNVIKLRKEELTLNNIRQYYVLCGNRKD---------------------  324

Query  475  TRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPD  534
                              K +          + QAIIFC+T+ +   L    +Q G    
Sbjct  325  ------------------KYQALCNIYGGITIGQAIIFCQTRRNAKWLTVEMMQDG----  362

Query  535  KKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP-  593
                      L G+    +R   ++RF+ G  + LI T+V ARGID+  V  V+N  LP 
Sbjct  363  -----HQVSLLSGELTVDQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPV  417

Query  594  -----DEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGG  648
                  + + Y+HRIGR GR  + GLA +++                             
Sbjct  418  NQAEEPDYETYLHRIGRTGRFGKKGLAFNMI-----------------------------  448

Query  649  CTIWYNEMQLLSEIEEHLNCTISQVEPD  676
                 +++ LL +I++H N +I Q++P+
Sbjct  449  ---EVDKLPLLMKIQDHFNSSIKQLDPE  473


 Score = 64.8 bits (156),  Expect = 1e-09, Method: Composition-based stats.
 Identities = 64/411 (16%), Positives = 133/411 (32%), Gaps = 76/411 (18%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            +  F E+ +  E+ + +  M +  P+ IQ  ++P++L     +++  +++G+GKT AF +
Sbjct  96   VKTFEELRLKEELLKGIYAMGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVL  155

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKE  118
             ++  V       Q             +   +  +                C   + +  
Sbjct  156  AMLSRVNALKLFPQ---------CLCLAPTYELALQTGRVVERMGK----FCVDVQVMYA  202

Query  119  WHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQ  178
              G R  +G    K   ++     G   + W   +  +DL T    F           + 
Sbjct  203  IRGNRIPRGTDVTK---QIVIGTPGTV-LDWCFKRKLIDL-TKIRVFVLDEADVMIDTQG  257

Query  179  FDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFP---ACVLKN  235
            F++              L  +   + FS   +D    F        + + P      L+ 
Sbjct  258  FEDQSIRIQRA------LPSECQMLLFSATFEDSVWQF-------AERIIPDPNVIKLRK  304

Query  236  AELKFNFGEEEFKF--PPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVE  293
             EL  N   + +      KD + AL     G  +                    +A+I  
Sbjct  305  EELTLNNIRQYYVLCGNRKDKYQALCNIYGGITIG-------------------QAIIFC  345

Query  294  PSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVD----IVVGTPGR  349
                   QT  N K     +     +  L+ G +    + S+++   D    +++ T   
Sbjct  346  -------QTRRNAKWLTVEMMQDGHQVSLLSGELTVDQRASIIQRFRDGKEKVLITT---  395

Query  350  LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR  400
                V    +++ QV  +V    D  ++Q          ++I +    GK+
Sbjct  396  ---NVCARGIDVKQVTIVV--NFDLPVNQAEEPDYETYLHRIGRTGRFGKK  441


>sp|Q6C3X7|DBP5_YARLI ATP-dependent RNA helicase DBP5 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP5 PE=3 
SV=1
Length=488

 Score = 259 bits (661),  Expect = 6e-77, Method: Composition-based stats.
 Identities = 106/469 (23%), Positives = 179/469 (38%), Gaps = 80/469 (17%)

Query  199  DKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVAL  258
                +  +K  +DLGL   +   +          ++   L     +           +  
Sbjct  91   PNSPLYSAKRFEDLGLDENLLKGLYAMKFNKPSKIQEKALPLLLSDPP------HNMIGQ  144

Query  259  SKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKL  318
            S++  G       +    +++      A + + + PSRELA QTL+ + + KK+ D   +
Sbjct  145  SQSGTGKTGAFSLT---MLSRVDPNLKAVQCICLAPSRELARQTLDVVDEMKKFTD---I  198

Query  319  RELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQ  378
               LI+     R Q    +    I+VGTPG +  L+   +++   V+  VLDEAD ++  
Sbjct  199  TTHLIVPESTERGQ----KVTSQILVGTPGSVAGLLQKKQIDAKHVKVFVLDEADNMVDS  254

Query  379  GYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVP  438
                   R+   +P  T      QV++ SAT     V  L+ K+   P  + LK  +   
Sbjct  255  SMGSTCARIKKYLPSST------QVVLFSATFP-ESVLDLAGKMCPNPNEIRLKANELNV  307

Query  439  DTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAV  498
            D +  + +                                    E   E  K+L+  Y++
Sbjct  308  DAITQLYMDC----------------------------------EDGEEKFKMLEELYSM  333

Query  499  RAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNL  558
              I       ++IF   +   + L Q   + G              LH D    ER + +
Sbjct  334  LTIA-----SSVIFVAQRSTANALYQRMSKNG---------HKVSLLHSDLSVDERDRLM  379

Query  559  ERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD------EKQNYVHRIGRVGRAERM  612
            + F+ G  + LI T+V ARGIDI  V  V+N  LP       + + Y+HRIGR GR  R 
Sbjct  380  DDFRFGRSKVLISTNVIARGIDIATVSMVVNYDLPTDKNGKPDPETYLHRIGRTGRFGRS  439

Query  613  GLAISLVATEKE-KVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660
            G++IS V  E   +V   +  S G     T++  D    +     + + 
Sbjct  440  GVSISFVHDEASFEVLDSIQQSLG--MTLTQVPTDDIDEVEEIIKKAIK  486


 Score = 83.3 bits (204),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 21/71 (30%), Positives = 43/71 (61%), Gaps = 2/71 (3%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSIPVI  61
            F ++G+   + + +  M +  P+ IQ +++PL+L     +++  +++G+GKTGAFS+ ++
Sbjct  101  FEDLGLDENLLKGLYAMKFNKPSKIQEKALPLLLSDPPHNMIGQSQSGTGKTGAFSLTML  160

Query  62   QIVYETLKDQQ  72
              V   LK  Q
Sbjct  161  SRVDPNLKAVQ  171


>sp|A5DPU0|MAK5_PICGU ATP-dependent RNA helicase MAK5 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=MAK5 PE=3 
SV=1
Length=754

 Score = 266 bits (679),  Expect = 6e-77, Method: Composition-based stats.
 Identities = 98/463 (21%), Positives = 168/463 (36%), Gaps = 57/463 (12%)

Query  246  EFKFPPKDGFVALSKAPDGYIV---KSQHSGNAQVTQTKFLPNA-------------PKA  289
             FK P      A+  A  G  V    +  SG         L                P A
Sbjct  203  GFKEPTAIQRKAIPLALQGKDVIGKATTGSGKTLAYGIPILERCLAQLESKTNTIKPPTA  262

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR  349
            +I  P+RELA Q ++++ +  K+    +   + I GG++ + Q  +L +G  I+V TPGR
Sbjct  263  MIFAPTRELAHQVVDHMNKIAKFSPLAQNGIVSITGGLSIQKQERLLSHGPSILVATPGR  322

Query  350  LDDLVSTGKLNLSQV----RFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD-----GKR  400
              +L+    ++L         +VLDEAD LL  G+ +   ++ + + +          +R
Sbjct  323  CLELME-KSVDLVNRMALTDMIVLDEADRLLQDGHFEEFEKILDMLNKHRPKKTQGVSRR  381

Query  401  LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLG  460
             Q +V SAT       KLS               ++ P       +  +     L  +L 
Sbjct  382  WQTLVFSATFSRDLFGKLS---------------NNKPRNKESSFIENDEILSLLNTKLQ  426

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
                    + A           E   E     +  Y    +  +     ++F        
Sbjct  427  FRDRTPAVIDANPKEIVSGKVTEALVECGPSERDLYLYYFLLMYP-GSTLVFANAIDSVK  485

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK----KGDVRFLICTDVAA  576
             L  +                   +H      +R + LERFK    K     LI +DVAA
Sbjct  486  RLVPFLTNL---------NIPTFSIHSSMIQKQRLRALERFKAAGEKNQTAVLIASDVAA  536

Query  577  RGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGK  636
            RG+DI  + +V +  LP     YVHR GR  RA + G+++   + ++    +        
Sbjct  537  RGLDIPNIDHVAHYHLPRSADVYVHRSGRTARAGKEGVSVMFCSPQEASGPFRKLRKLVA  596

Query  637  GCYN--TRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDI  677
               N  +R+       +   EM L+++++  +N +       I
Sbjct  597  DSANKGSRMNMHSDVKLLPIEMDLVTQLKPRVNISSKLANSTI  639


 Score = 100 bits (249),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 33/128 (26%), Positives = 55/128 (43%), Gaps = 9/128 (7%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +   + +       +    +  PT IQ ++IPL L G DV+  A TGSGKT A+ IP+++
Sbjct  185  SMENVSLSTYTINGLAGCGFKEPTAIQRKAIPLALQGKDVIGKATTGSGKTLAYGIPILE  244

Query  63   IVYETLKDQQEGKKGKTT-IKTGASVLNKWQMNPYDRGSAFAIG--------SDGLCCQS  113
                 L+ +    K  T  I      L    ++  ++ + F+          + GL  Q 
Sbjct  245  RCLAQLESKTNTIKPPTAMIFAPTRELAHQVVDHMNKIAKFSPLAQNGIVSITGGLSIQK  304

Query  114  REVKEWHG  121
            +E    HG
Sbjct  305  QERLLSHG  312


>sp|O74393|MAK5_SCHPO ATP-dependent RNA helicase mak5 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=mak5 
PE=1 SV=1
Length=648

 Score = 263 bits (672),  Expect = 7e-77, Method: Composition-based stats.
 Identities = 97/418 (23%), Positives = 167/418 (40%), Gaps = 47/418 (11%)

Query  235  NAELKFNFGEEEFKFPPKDGFVALSKAPDGYIV---KSQHSGNAQVTQTKFLPNA-----  286
            + E+  +  +  F  P     + + +A  G+ +       SG         L +      
Sbjct  130  SPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVD  189

Query  287  ---PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
                +AL+V P+RELA Q   + +  K    +P +R + I GG+A + Q  +L     +V
Sbjct  190  AKYVQALVVAPTRELAHQICQHFELIK---PSPNIRVMSITGGLAVQKQQRLLNKHPHVV  246

Query  344  VGTPGRLDDLVSTGKL--NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL  401
            V TPGRL  +++   L  N  +++ LVLDEAD LL + + + ++++   +        + 
Sbjct  247  VATPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEIL--GNPMHTQR  304

Query  402  QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK  461
            Q  + SAT      ++L + +      +  K    + + +  V     PK          
Sbjct  305  QTFIFSATFDEGLQQRLKKNMKGN---ITEKYNSPMENMLKEVRFFGKPKF---------  352

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
                   + A   +   +   E   E     K  Y    I  +   + ++F     D   
Sbjct  353  -------LDANPQSAVASRVLEGLIECAPAEKDLYLYYLIMRYP-GKTMVFANGIEDIKR  404

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            +  +  +          +     LH      +R Q+LE+FK      L+CTDVAARGIDI
Sbjct  405  ITPFLNEL---------KVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDI  455

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCY  639
              V +VI+  +P     YVHR GR  RA   G++I +   ++      +C    K   
Sbjct  456  PSVTHVIHYHVPHTADMYVHRSGRTARANEDGVSILMCGPKELSQLKRLCYRLKKKIE  513


 Score = 96.0 bits (237),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 30/133 (23%), Positives = 59/133 (44%), Gaps = 4/133 (3%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++A++   + PE+  ++ +  +  P  IQ+  IP    G D++  A+TGSGKT AF IP+
Sbjct  121  VSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPI  180

Query  61   IQIVYETLKDQ-QEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREV---  116
            ++     +  +  +      T +    +   +++            + GL  Q ++    
Sbjct  181  LEHCLRNVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLN  240

Query  117  KEWHGCRATKGLM  129
            K  H   AT G +
Sbjct  241  KHPHVVVATPGRL  253


>sp|Q4WM60|DBP4_ASPFU ATP-dependent RNA helicase dbp4 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=dbp4 PE=3 SV=1
Length=787

 Score = 266 bits (680),  Expect = 7e-77, Method: Composition-based stats.
 Identities = 93/452 (21%), Positives = 169/452 (37%), Gaps = 74/452 (16%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
             K+  DL L+      + +        +++  +                 +  +K   G 
Sbjct  46   FKSFSDLPLSEPTASGLASSHYKTLTDIQSRAISHAL--------KGRDILGAAKTGSGK  97

Query  266  IVKSQHSGNAQVTQTKFLPN-APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
             +         + + ++  +    ALI+ P+RELA Q    +++  +Y         L+I
Sbjct  98   TLAFLVPVLENLYRKQWAEHDGLGALILSPTRELAIQIFEVLRKIGRY---HTFSAGLVI  154

Query  325  GGVAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDF  383
            GG + +++   L   ++I+V TPGR L  L  T   +   ++ LVLDEAD +L  G+   
Sbjct  155  GGKSLKEEQERL-GRMNILVCTPGRMLQHLDQTALFDTYNLQMLVLDEADRILDLGFQQT  213

Query  384  INRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL--KGEDSVPDTV  441
            ++ +   +P      K  Q ++ SAT  +  V  L+   +  P +V +      + P  +
Sbjct  214  VDAIIGHLP------KERQTLLFSAT-QTKKVSDLARLSLQDPEYVAVHETASSATPSKL  266

Query  442  HHVVV--PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVR  499
                V  P+  K D LW                                           
Sbjct  267  QQHYVITPLPQKLDILWS------------------------------------------  284

Query  500  AIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLE  559
             I+ +   + ++F  +      + + F     G          + LHG +K   R   + 
Sbjct  285  FIRSNLKSKTMVFLSSGKQVRFVYESFRHLQPG-------IPLMHLHGRQKQGGRLDIVT  337

Query  560  RFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            RF +     L  TDVAARG+D   V +VI +  P++   Y+HR+GR  R ER G A+  +
Sbjct  338  RFSQSKHCVLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYEREGRAVLFL  397

Query  620  ATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTI  651
               +E+        +        +K +   +I
Sbjct  398  DPSEEEGMLKRLEQKKVPIEKINIKANKQQSI  429


 Score = 93.3 bits (230),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 32/120 (27%), Positives = 56/120 (47%), Gaps = 8/120 (7%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +FS++ +    A  +    +   TDIQ+ +I   L G D+L AA+TGSGKT AF +PV+
Sbjct  47   KSFSDLPLSEPTASGLASSHYKTLTDIQSRAISHALKGRDILGAAKTGSGKTLAFLVPVL  106

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYD---RGSAFAIGSDGLCCQSREVKE  118
            + +Y     + +G           S   +  +  ++   +   +   S GL    + +KE
Sbjct  107  ENLYRKQWAEHDG-----LGALILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLKE  161


>sp|P20448|DBP4_YEAST ATP-dependent RNA helicase HCA4 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=HCA4 
PE=1 SV=2
Length=770

 Score = 266 bits (679),  Expect = 7e-77, Method: Composition-based stats.
 Identities = 91/449 (20%), Positives = 173/449 (39%), Gaps = 76/449 (17%)

Query  196  LDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGF  255
            +D     +  +K  KDL ++      ++  +      ++   +  +              
Sbjct  30   IDEYDPKITKAKFFKDLPISDPTLKGLRESSFIKLTEIQADSIPVSL--------QGHDV  81

Query  256  VALSKAPDGYIVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYID  314
            +A +K   G  +        ++ + K+   +   ALI+ P+RELA Q    + +   +  
Sbjct  82   LAAAKTGSGKTLAFLVPVIEKLYREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTS  141

Query  315  NPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTG-KLNLSQVRFLVLDEAD  373
                   L+IGG   + +L  +   ++I++GTPGR+   +     LN S ++ LVLDEAD
Sbjct  142  ---FSAGLVIGGKDVKFELERISR-INILIGTPGRILQHLDQAVGLNTSNLQMLVLDEAD  197

Query  374  GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWV----  429
              L  G+   ++ + + +          Q ++ SAT  S  V  L+   +     V    
Sbjct  198  RCLDMGFKKTLDAIVSTL------SPSRQTLLFSAT-QSQSVADLARLSLTDYKTVGTHD  250

Query  430  ----DLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW  485
                 +  E S P+T+    + V                                     
Sbjct  251  VMDGSVNKEASTPETLQQFYIEVPLAD---------------------------------  277

Query  486  SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL  545
                   K +     IK H   + I+F  +      + + F +   G        S + L
Sbjct  278  -------KLDILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPG-------ISLMHL  323

Query  546  HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR  605
            HG +K   R + L++F +     L  TDV ARGID   V +V+ V  P++   Y+HR+GR
Sbjct  324  HGRQKQRARTETLDKFNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGR  383

Query  606  VGRAERMGLAISLVATEKEKVWYHVCSSR  634
              R  + G ++ ++  ++++ +    ++R
Sbjct  384  CARYGKKGKSLIMLTPQEQEAFLKRLNAR  412


 Score = 99.4 bits (246),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 37/117 (32%), Positives = 58/117 (50%), Gaps = 8/117 (7%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F ++ +     + + E  ++  T+IQA+SIP+ L G DVL AA+TGSGKT AF +PVI+ 
Sbjct  43   FKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEK  102

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSA---FAIGSDGLCCQSREVK  117
            +Y     + +G           S   +  M  Y+  +        S GL    ++VK
Sbjct  103  LYREKWTEFDG-----LGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVK  154


>sp|A6ZPU3|DBP4_YEAS7 ATP-dependent RNA helicase DBP4 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DBP4 PE=3 SV=1
Length=770

 Score = 266 bits (679),  Expect = 9e-77, Method: Composition-based stats.
 Identities = 91/449 (20%), Positives = 173/449 (39%), Gaps = 76/449 (17%)

Query  196  LDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGF  255
            +D     +  +K  KDL ++      ++  +      ++   +  +              
Sbjct  30   IDEYDPKITKAKFFKDLPISDPTLKGLRESSFIKLTEIQADSIPVSL--------QGHDV  81

Query  256  VALSKAPDGYIVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYID  314
            +A +K   G  +        ++ + K+   +   ALI+ P+RELA Q    + +   +  
Sbjct  82   LAAAKTGSGKTLAFLVPVIEKLYREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTS  141

Query  315  NPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTG-KLNLSQVRFLVLDEAD  373
                   L+IGG   + +L  +   ++I++GTPGR+   +     LN S ++ LVLDEAD
Sbjct  142  ---FSAGLVIGGKDVKFELERISR-INILIGTPGRILQHLDQAVGLNTSNLQMLVLDEAD  197

Query  374  GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWV----  429
              L  G+   ++ + + +          Q ++ SAT  S  V  L+   +     V    
Sbjct  198  RCLDMGFKKTLDAIVSTL------SPSRQTLLFSAT-QSQSVADLARLSLTDYKTVGTHD  250

Query  430  ----DLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW  485
                 +  E S P+T+    + V                                     
Sbjct  251  VMDGSVNKEASTPETLQQFYIEVPLAD---------------------------------  277

Query  486  SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL  545
                   K +     IK H   + I+F  +      + + F +   G        S + L
Sbjct  278  -------KLDILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPG-------ISLMHL  323

Query  546  HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR  605
            HG +K   R + L++F +     L  TDV ARGID   V +V+ V  P++   Y+HR+GR
Sbjct  324  HGRQKQRARTETLDKFNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGR  383

Query  606  VGRAERMGLAISLVATEKEKVWYHVCSSR  634
              R  + G ++ ++  ++++ +    ++R
Sbjct  384  CARYGKKGKSLIMLTPQEQEAFLKRLNAR  412


 Score = 99.4 bits (246),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 37/117 (32%), Positives = 58/117 (50%), Gaps = 8/117 (7%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F ++ +     + + E  ++  T+IQA+SIP+ L G DVL AA+TGSGKT AF +PVI+ 
Sbjct  43   FKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEK  102

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSA---FAIGSDGLCCQSREVK  117
            +Y     + +G           S   +  M  Y+  +        S GL    ++VK
Sbjct  103  LYREKWTEFDG-----LGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVK  154


>sp|A1DNF9|DBP4_NEOFI ATP-dependent RNA helicase dbp4 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp4 
PE=3 SV=1
Length=810

 Score = 266 bits (681),  Expect = 9e-77, Method: Composition-based stats.
 Identities = 96/462 (21%), Positives = 173/462 (37%), Gaps = 78/462 (17%)

Query  196  LDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGF  255
            LD+ +    FS    DL L+      + +        +++  +                 
Sbjct  40   LDLKETFKSFS----DLPLSEPTASGLASSHYKTLTDIQSRAISHAL--------KGRDV  87

Query  256  VALSKAPDGYIVKSQHSGNAQVTQTKFLPN-APKALIVEPSRELAEQTLNNIKQFKKYID  314
            +  +K   G  +         + + ++  +    ALI+ P+RELA Q    +++  +Y  
Sbjct  88   LGAAKTGSGKTLAFLVPVLENLYRKQWAEHDGLGALILSPTRELAIQIFEVLRKIGRY--  145

Query  315  NPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEAD  373
                   L+IGG + +++   L   ++I+V TPGR L  L  T   +   ++ LVLDEAD
Sbjct  146  -HTFSAGLVIGGKSLKEEQERL-GRMNILVCTPGRMLQHLDQTALFDTYNLQMLVLDEAD  203

Query  374  GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL--  431
             +L  G+   ++ +   +P      K  Q ++ SAT  +  V  L+   +  P +V +  
Sbjct  204  RILDLGFQQTVDAIIGHLP------KERQTLLFSAT-QTKKVSDLARLSLQDPEYVAVHE  256

Query  432  KGEDSVPDTVHHVVV--PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAI  489
                + P  +    V  P+  K D LW                                 
Sbjct  257  TASSATPSKLQQHYVITPLPQKLDILWS--------------------------------  284

Query  490  KILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDR  549
                       I+ +   + ++F  +      + + F     G          + LHG +
Sbjct  285  ----------FIRSNLKSKTMVFLSSGKQVRFVYESFRHLQPG-------IPLMHLHGRQ  327

Query  550  KPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA  609
            K   R   + RF +     L  TDVAARG+D   V +VI +  P++   Y+HR+GR  R 
Sbjct  328  KQGGRLDIVTRFSQSKHCVLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARY  387

Query  610  ERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTI  651
            ER G A+  +   +E+        +        +K +   +I
Sbjct  388  EREGRAVLFLDPSEEEGMLKRLEQKKVPIEKINIKANKQQSI  429


 Score = 94.0 bits (232),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 33/120 (28%), Positives = 56/120 (47%), Gaps = 8/120 (7%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +FS++ +    A  +    +   TDIQ+ +I   L G DVL AA+TGSGKT AF +PV+
Sbjct  47   KSFSDLPLSEPTASGLASSHYKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPVL  106

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYD---RGSAFAIGSDGLCCQSREVKE  118
            + +Y     + +G           S   +  +  ++   +   +   S GL    + +KE
Sbjct  107  ENLYRKQWAEHDG-----LGALILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLKE  161


>sp|Q9NVP1|DDX18_HUMAN ATP-dependent RNA helicase DDX18 OS=Homo 
sapiens OX=9606 GN=DDX18 PE=1 SV=2
Length=670

 Score = 263 bits (673),  Expect = 9e-77, Method: Composition-based stats.
 Identities = 96/511 (19%), Positives = 188/511 (37%), Gaps = 68/511 (13%)

Query  209  GKDLGLAFEIPPHMKNQALFPACV-LKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIV  267
            G     +F    ++ N+    A   +    +     +           +A +K   G  +
Sbjct  172  GAFEDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTL  231

Query  268  KSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
                     + + +F+P N    LI+ P+RELA QT   +K+   +  +      LI+GG
Sbjct  232  AFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTY---GLIMGG  288

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
                 +   L NG++I+V TPGRL D + +T       ++ LV+DEAD +L  G+ + + 
Sbjct  289  SNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELK  348

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF-PTWVDLKGE--DSVPDTVH  442
            ++   +P       R Q ++ SAT  +  V+ L+   +   P +V +  +  ++  D + 
Sbjct  349  QIIKLLPT------RRQTMLFSAT-QTRKVEDLARISLKKEPLYVGVDDDKANATVDGLE  401

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
               V    +                                         +       +K
Sbjct  402  QGYVVCPSEK----------------------------------------RFLLLFTFLK  421

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
            +++  + ++F  + +      +                  + +HG +K ++R     +F 
Sbjct  422  KNRKKKLMVFFSSCMSVKYHYELL---------NYIDLPVLAIHGKQKQNKRTTTFFQFC  472

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA-ERMGLAISLVAT  621
              D   L+CTDVAARG+DI  V +++    PD+ + Y+HR+GR  R     G A+ ++  
Sbjct  473  NADSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRP  532

Query  622  EKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPV  681
            E+     ++  S+                I  ++++ L E    L+ +  +         
Sbjct  533  EELGFLRYLKQSK-VPLSEFDFSWSKISDI-QSQLEKLIEKNYFLHKSAQEAYKSYIRAY  590

Query  682  DEFDGKVTYGQKRAAGGGSYKGHVDILAPTV  712
            D    K  +                 + P V
Sbjct  591  DSHSLKQIFNVNNLNLPQVALSFGFKVPPFV  621


 Score = 94.0 bits (232),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 30/97 (31%), Positives = 50/97 (52%), Gaps = 7/97 (7%)

Query  2    AAFSEMG--VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
             +F+ +   V     +A++EM +   T+IQ +SI  +L G D+L AA+TGSGKT AF IP
Sbjct  177  TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP  236

Query  60   VIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
             ++++ +     + G     T     S   +  M  +
Sbjct  237  AVELIVKLRFMPRNG-----TGVLILSPTRELAMQTF  268


>sp|Q54Q94|DDX10_DICDI Probable ATP-dependent RNA helicase ddx10 
OS=Dictyostelium discoideum OX=44689 GN=ddx10 PE=3 SV=1
Length=878

 Score = 268 bits (684),  Expect = 1e-76, Method: Composition-based stats.
 Identities = 93/460 (20%), Positives = 172/460 (37%), Gaps = 70/460 (15%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             KDL ++      +          ++ A L                 +  +K   G  + 
Sbjct  143  FKDLPISQLTLKALTESKFLKLTDIQRASLPHTL--------CGRDILGAAKTGSGKTLS  194

Query  269  SQHSGNAQVTQTKF-LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
                    + + ++   +   A+++ P+RELA Q  + +K   KY         LIIGG 
Sbjct  195  FILPILETLWRNRWGRDDGIGAIVLSPTRELAIQIFDVLKAVGKY---HTFSAGLIIGGR  251

Query  328  AARDQLSVLENGVDIVVGTPGRLD-DLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
              + +   + N ++I++ TPGRL   +  T   + S ++ LVLDEAD +L  G+S  +N 
Sbjct  252  NVQQEKDKI-NAMNILIATPGRLLQHMDETYGFDCSNLKILVLDEADRILDLGFSKCLNS  310

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED--SVPDTVHHV  444
            +   +P      +  Q ++ SAT  +  ++ L+   +  P ++ +  +D  + P  +   
Sbjct  311  IVENLP------RERQTLLFSAT-QTKSIRDLARLSLQEPEYISVYEKDITTTPQNLTQT  363

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
            +  +  +                                        +K       IK H
Sbjct  364  LCVIPLE----------------------------------------MKLNMLFSFIKTH  383

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
               + I+F  +        + F     G        +   LHG  K   R +  E F K 
Sbjct  384  LTSKIIVFFASCKQVRFAHETFKLLNPGT-------TLFPLHGKMKQWTRLEVFEDFCKK  436

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
                L  TD+AARG+D   V +VI V  PD+ + Y+HR+GR  R +  G +I+++   ++
Sbjct  437  KAGTLFATDIAARGLDFPAVEWVIQVDCPDDIETYIHRVGRTARNDAPGQSITILLPSEK  496

Query  625  KVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEE  664
                ++   +           +   +I       LSE  +
Sbjct  497  DGMVNLMEKQKMKFEILEPNPEKLVSIDSKLSSFLSEKTD  536


 Score = 91.7 bits (226),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 32/120 (27%), Positives = 56/120 (47%), Gaps = 8/120 (7%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F ++ +     +A+ E  +L  TDIQ  S+P  L G D+L AA+TGSGKT +F +P++
Sbjct  141  TDFKDLPISQLTLKALTESKFLKLTDIQRASLPHTLCGRDILGAAKTGSGKTLSFILPIL  200

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGS---AFAIGSDGLCCQSREVKE  118
            + ++     + +G           S   +  +  +D       +   S GL    R V++
Sbjct  201  ETLWRNRWGRDDG-----IGAIVLSPTRELAIQIFDVLKAVGKYHTFSAGLIIGGRNVQQ  255


>sp|Q4WMS3|MAK5_ASPFU ATP-dependent RNA helicase mak5 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=mak5 PE=3 SV=2
Length=777

 Score = 265 bits (678),  Expect = 1e-76, Method: Composition-based stats.
 Identities = 108/495 (22%), Positives = 191/495 (39%), Gaps = 55/495 (11%)

Query  212  LGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGF---VALSKAP-DGYIV  267
            LGL+ EI   +          ++ A +       +       G    +A      + Y+ 
Sbjct  206  LGLSPEILTGLSKMKFGSPTSVQEACIPQILEGHDVIGKASTGSGKTLAFGIPILEHYLE  265

Query  268  KSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
            K +   +AQ  Q     + P ALI+ P+RELA Q   +I +          R  L+ GG+
Sbjct  266  KKRDDISAQKEQMSEKDSTPIALILSPTRELAHQLSKHIGELIAQAPGVNARIALLTGGL  325

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFI  384
            + + Q  +L  G DIV+GTPGR+ +++STG+     + Q++FLV+DEAD LLS+G+   +
Sbjct  326  SVQKQQRLLS-GADIVIGTPGRVWEILSTGQGLIRKMQQIKFLVVDEADRLLSEGHFKEV  384

Query  385  NRMHNQIPQV----------------TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTW  428
              + N + +V                +      Q +V SAT H    +KL+ K       
Sbjct  385  EEILNSLDRVEDGEVPDGEDQASEEESDPSSERQTLVFSATFHRDLQQKLAGK-------  437

Query  429  VDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEA  488
                            ++      D L ++L     +   +     ++   N  E   E 
Sbjct  438  ---------RKWTRGDIMDKKESMDYLLQKLNFREEKPKFIDMNPISQMADNLKEGIVEC  488

Query  489  IKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGD  548
              + K  +    +  H   + ++F  +                    +  Q   + LH  
Sbjct  489  GAMEKDLFLYTLLLYHPKHRTLVFTNSISAVRR---------LTKLLQTLQLPALALHSS  539

Query  549  RKPHERKQNLERFKKGDVR---FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR  605
                 R +++ERF          LI TDVAARG+DI G+  VI+   P     YVHR GR
Sbjct  540  MAQKARLRSVERFSSPSSDPSTILIATDVAARGLDIKGIDLVIHYHAPRTADTYVHRSGR  599

Query  606  VGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEH  665
              RA   G ++ +   ++      + +       N +        +   + +++S ++  
Sbjct  600  TARAGASGKSVIICGPDEMVGVVRLAAKVHANMANGKKLPLESLEL---DRRVVSRVKPR  656

Query  666  LNCTISQVEPDIKVP  680
            ++      + +I   
Sbjct  657  VSLASRITDANIAKE  671


 Score = 118 bits (295),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 68/160 (43%), Gaps = 14/160 (9%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++A+  +G+ PEI   + +M +  PT +Q   IP IL G DV+  A TGSGKT AF IP+
Sbjct  200  VSAWDSLGLSPEILTGLSKMKFGSPTSVQEACIPQILEGHDVIGKASTGSGKTLAFGIPI  259

Query  61   IQIVYETLKD------QQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSR  114
            ++   E  +D      +Q  +K  T I    S   +               + G+  +  
Sbjct  260  LEHYLEKKRDDISAQKEQMSEKDSTPIALILSPTRELAHQLSKHIGELIAQAPGVNARIA  319

Query  115  EVKEWHGCRATKGLMKGK--------HYYEVSCHDQGLCR  146
             +      +  + L+ G           +E+    QGL R
Sbjct  320  LLTGGLSVQKQQRLLSGADIVIGTPGRVWEILSTGQGLIR  359


>sp|Q9DF35|DD21A_XENLA Nucleolar RNA helicase 2-A OS=Xenopus laevis 
OX=8355 GN=ddx21-a PE=2 SV=2
Length=759

 Score = 265 bits (677),  Expect = 1e-76, Method: Composition-based stats.
 Identities = 100/410 (24%), Positives = 168/410 (41%), Gaps = 57/410 (14%)

Query  232  VLKNAELKFNFGEEEFKFPPK---DGFVALSKAPDGYIVKSQHSGNAQVTQTKF---LPN  285
             L+   + + F  +   F         V  ++   G           ++ + +       
Sbjct  193  NLQAKGVSYLFPIQSKTFHTAYSGKDVVVQARTGTGKTFSFAIPLVEKLNEDQQPLARGR  252

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            AP+ +I+ P+RELA Q  N I+   K     KL+     GG   + Q+  +++G+D +VG
Sbjct  253  APRVIILTPTRELAIQITNEIRSITK-----KLKVSCFYGGTPYQQQVFAIKDGIDFLVG  307

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGR+ DLV   +L+L+ ++ +VLDE D +   G+S+ +  + +   +   + +  Q ++
Sbjct  308  TPGRVRDLVQNYRLDLTTLKHVVLDEVDMMFDMGFSEQVEEILSVRYKADPE-ENPQTLL  366

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT   + +  +++K M                                  +  K  + 
Sbjct  367  FSATCPDW-MYNMAKKYMRK--------------------------------QFEKIDLI  393

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                     T          S+   +L     V +       + IIFC +K++   L   
Sbjct  394  GHRSQKAATTVEHLAIECTRSQKAAVLGDLVQVYSGSH---GKTIIFCDSKLEAHTLA--  448

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
                         + S   LHGD +  ER+  L+ F++G    LI T+VAARG+DI  V 
Sbjct  449  -------TSCGSLKQSAKSLHGDLQQKEREVVLKGFRQGTFEVLIATNVAARGLDIPEVD  501

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRG  635
             V+  + P E   YVHR GR GRA R G+ ISL    +     +V  S G
Sbjct  502  LVVLYSAPKEADAYVHRSGRTGRAGRTGVCISLYEPWERHYLRNVERSTG  551


 Score = 82.9 bits (203),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 54/143 (38%), Gaps = 10/143 (7%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  +  E  + ++         IQ+++      G DV++ A TG+GKT +F+IP+++ 
Sbjct  181  FSKFPLSKETIKNLQAKGVSYLFPIQSKTFHTAYSGKDVVVQARTGTGKTFSFAIPLVEK  240

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            + E   DQQ   +G+       +   +  +   +   +        C       +    +
Sbjct  241  LNE---DQQPLARGRAPRVIILTPTRELAIQITNEIRSITKKLKVSCFYGGTPYQ----Q  293

Query  124  ATKGLMKGKHYYEVSCHDQGLCR  146
                +  G    +      G  R
Sbjct  294  QVFAIKDGI---DFLVGTPGRVR  313


>sp|Q9QY16|DDX25_RAT ATP-dependent RNA helicase DDX25 OS=Rattus 
norvegicus OX=10116 GN=Ddx25 PE=1 SV=2
Length=483

 Score = 258 bits (658),  Expect = 2e-76, Method: Composition-based stats.
 Identities = 103/448 (23%), Positives = 175/448 (39%), Gaps = 107/448 (24%)

Query  244  EEEFKFPPKDGFVALSKAPDGYIVKSQHSGN-------AQVTQTKFLPNAPKALIVEPSR  296
                K       + L+  P   I +SQ           A + +   L   P+ L + P+ 
Sbjct  118  NRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLNRVNALELFPQCLCLAPTY  177

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDL-VS  355
            ELA QT   +++  K+     +  +  I G        V +    IV+GTPG + D    
Sbjct  178  ELALQTGRVVERMGKFC--VDVEVMYAIRGNRIPRGTDVTK---QIVIGTPGTVLDWCFK  232

Query  356  TGKLNLSQVRFLVLDEADGLLS-QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFD  414
               ++L+++R  VLDEAD ++  QG+SD   R+   +P         Q+++ SAT     
Sbjct  233  RKLIDLTKIRVFVLDEADVMIDTQGFSDQSIRIQRALP------SECQMLLFSATFED-S  285

Query  415  VKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDN  474
            V + +E+I+  P  + L+ E+   + +    V    + D                     
Sbjct  286  VWQFAERIIPDPNVIKLRKEELTLNNIRQYYVLCENRKD---------------------  324

Query  475  TRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPD  534
                              K +          + QAIIFC+T+ +   L    +Q G    
Sbjct  325  ------------------KYQALCNIYGGITIGQAIIFCQTRRNAKWLTVEMMQDG----  362

Query  535  KKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP-  593
                      L G+    +R   ++RF+ G  + LI T+V ARGID+  V  V+N  LP 
Sbjct  363  -----HQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPV  417

Query  594  -----DEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGG  648
                  + + Y+HRIGR GR  + GLA +++                             
Sbjct  418  NQSEEPDYETYLHRIGRTGRFGKKGLAFNMI-----------------------------  448

Query  649  CTIWYNEMQLLSEIEEHLNCTISQVEPD  676
                 +++ LL +I++H N +I Q++P+
Sbjct  449  ---EVDKLPLLMKIQDHFNSSIKQLDPE  473


 Score = 64.8 bits (156),  Expect = 1e-09, Method: Composition-based stats.
 Identities = 30/168 (18%), Positives = 67/168 (40%), Gaps = 8/168 (5%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            +  F E+ +  E+ + +  M +  P+ IQ  ++P++L     +++  +++G+GKT AF +
Sbjct  96   VKTFEELRLKEELLKGIYAMGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVL  155

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSA--FAIGSDGLCCQSREV  116
             ++  V       Q      T      +     +M  +       +AI  + +   +   
Sbjct  156  AMLNRVNALELFPQCLCLAPTYELALQTGRVVERMGKFCVDVEVMYAIRGNRIPRGTDVT  215

Query  117  KEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFG  164
            K+      T G +     ++    D    RV +   +A + + T  F 
Sbjct  216  KQI--VIGTPGTVLD-WCFKRKLIDLTKIRV-FVLDEADVMIDTQGFS  259


>sp|A7TEG8|MAK5_VANPO ATP-dependent RNA helicase MAK5 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=MAK5 PE=3 SV=1
Length=763

 Score = 265 bits (677),  Expect = 2e-76, Method: Composition-based stats.
 Identities = 116/535 (22%), Positives = 209/535 (39%), Gaps = 60/535 (11%)

Query  214  LAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSG  273
            L+F     +         +++   +      E+         +  +    G  +      
Sbjct  199  LSFTTLHGLTKLGFNKPTLIQEEAIPMALKGED--------IMGKASTGSGKTLAYGIPI  250

Query  274  NAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI-DNPKLRELLIIGGVAARDQ  332
              ++ ++K    AP  LI  P+RELA+Q  +++++    I D      L + GG++ + Q
Sbjct  251  IEKLMKSKSN-TAPIGLIFTPTRELAKQVTDHLRKIASLIVDKSPHAILSLTGGLSIQKQ  309

Query  333  LSVLENGVD--IVVGTPGRLDDLVSTGKL---NLSQVRFLVLDEADGLLSQGYSDFINRM  387
              +L+      IVV TPGR  +L+   K      SQ+  LVLDEAD LL  G+ D    +
Sbjct  310  ERLLKYEGSGRIVVATPGRFLELIEKDKTLVERFSQISTLVLDEADRLLQDGHFDEFENI  369

Query  388  HNQIPQVTSDGK-RLQVIVCSATLHSFDVKKLSE---KIMHFPTWVDLKGEDSVPDTVHH  443
               + + + + K   Q ++ SAT  +    KLS    K M  P+    K E+ +   + H
Sbjct  370  LKYLGRESKNRKHNWQTMIFSATFATDLFDKLSHASWKNMKTPS----KNENEMEIVLKH  425

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
            ++  ++ K+  +             + A    +  +   E   E     +  +    +  
Sbjct  426  LMTKIHFKSKPIL------------IDANPEDKVSSQIKESLIECAATERDLFCYYFVSM  473

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
            +   + +IFC        L  Y               SC  +H       R +NLER+++
Sbjct  474  YP-GKTLIFCNAIDSVKKLTAYLNNL---------NISCFQIHSSMTQKNRLRNLERYQQ  523

Query  564  --------GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLA  615
                    G    L+ +DVAARG+DI G+ +VI+  LP     Y+HR GR  RA   G++
Sbjct  524  QSEKNKILGKPTVLVGSDVAARGLDIPGIQHVIHYHLPRTADVYIHRSGRTARANNEGVS  583

Query  616  ISLVATEK-----EKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTI  670
            + + + E+      K+   + +  GK     + K     T+   +  +LS+++E      
Sbjct  584  VMICSPEEAMGPLRKLRKTLANKSGKDIIMGKKKWQKTVTMLPIDDTILSQLKERSRLAS  643

Query  671  SQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKEAQTS  725
               + D+           T+ +K A   G      D +  T       +K  +T 
Sbjct  644  ELADHDL--ASSSLQKDDTWMKKAAEDLGVDIDSDDEIKDTFLAKNINKKRNKTL  696


 Score = 91.7 bits (226),  Expect = 8e-18, Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 42/96 (44%), Gaps = 7/96 (7%)

Query  9    VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETL  68
            +       + ++ +  PT IQ E+IP+ L G D++  A TGSGKT A+ IP+I+ + ++ 
Sbjct  199  LSFTTLHGLTKLGFNKPTLIQEEAIPMALKGEDIMGKASTGSGKTLAYGIPIIEKLMKS-  257

Query  69   KDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
                  K     I    +   +      D     A 
Sbjct  258  ------KSNTAPIGLIFTPTRELAKQVTDHLRKIAS  287


>sp|Q80Y44|DDX10_MOUSE Probable ATP-dependent RNA helicase DDX10 
OS=Mus musculus OX=10090 GN=Ddx10 PE=1 SV=2
Length=875

 Score = 266 bits (681),  Expect = 2e-76, Method: Composition-based stats.
 Identities = 101/536 (19%), Positives = 197/536 (37%), Gaps = 76/536 (14%)

Query  196  LDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGF  255
            +++++          D  L+ +    ++         ++   +                 
Sbjct  63   INVNEITRF-----SDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLAL--------QGKDV  109

Query  256  VALSKAPDGYIVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYID  314
            +  +K   G  +         + + ++   +    LI+ P+RELA QT   +++  K   
Sbjct  110  LGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGK---  166

Query  315  NPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLD-DLVSTGKLNLSQVRFLVLDEAD  373
            N      LIIGG   + +   + N ++I+V TPGRL   +  T   + + ++ LVLDEAD
Sbjct  167  NHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETICFHATNLQMLVLDEAD  225

Query  374  GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFP--TWVDL  431
             +L  G++D +N +   +P      K+ Q ++ SAT  +  VK L+   +  P   WV  
Sbjct  226  RILDMGFADTMNAIIENLP------KKRQTLLFSAT-QTKSVKDLARLSLKDPEYVWVHE  278

Query  432  KGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
            K + S P T+    +                                             
Sbjct  279  KAKYSTPATLEQNYIICELHQ---------------------------------------  299

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
             K       ++ H   ++I+F  +  +   L + F +   G        S + LHG ++ 
Sbjct  300  -KISVLFSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPG-------ISILALHGRQQQ  351

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
              R +    F +     L  TD+AARG+D   V +V+    P++   Y+HR GR  R + 
Sbjct  352  MRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKE  411

Query  612  MGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTIS  671
             G A+ ++   +E+        +       ++  +    +       L++ ++       
Sbjct  412  DGEALLILLPSEEQGMVQQLLQKKVPVKEIKINPEKLIDVQKKLESFLAQDQDLKERAQR  471

Query  672  QVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKEAQTSFL  727
                 I+      D +V    K      +    +  +AP ++ L  LEK+  T  +
Sbjct  472  CFVSYIRSVYLMKDKEVFNVSKLPITEYALSLGL-AVAPRIRFLQKLEKQPSTELV  526


 Score = 95.2 bits (235),  Expect = 9e-19, Method: Composition-based stats.
 Identities = 33/120 (28%), Positives = 56/120 (47%), Gaps = 8/120 (7%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  FS+  +  +  + ++E  + L T+IQ ++I L L G DVL AA+TGSGKT AF +PV
Sbjct  68   ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPV  127

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD---GLCCQSREVK  117
            ++ +Y       +G           S   +     ++         D   GL    +++K
Sbjct  128  LEALYRLQWTSTDG-----LGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLK  182


>sp|Q6CRF4|DBP4_KLULA ATP-dependent RNA helicase DBP4 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP4 PE=3 SV=1
Length=770

 Score = 265 bits (676),  Expect = 2e-76, Method: Composition-based stats.
 Identities = 89/435 (20%), Positives = 166/435 (38%), Gaps = 74/435 (17%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             +DL ++ +    +K  A      ++   +  +    +         +  +K   G  + 
Sbjct  43   FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHD--------VLGAAKTGSGKTLA  94

Query  269  SQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
                   ++ + K+   +   ALI+ P+RELA Q    + +  K+         L+IGG 
Sbjct  95   FLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKH---TTFSAGLVIGGK  151

Query  328  AARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
                +   +   ++I++GTPGR L  +      N S ++ LVLDEAD  L  G+   ++ 
Sbjct  152  DVTFEKERISR-INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDA  210

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWV------DLKGEDSVPDT  440
            + N +P         Q ++ SAT  S  +  L+   +     V      +     + P++
Sbjct  211  IINNLPAS------RQTLLFSAT-QSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPES  263

Query  441  VHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRA  500
            +    + V                                            K +     
Sbjct  264  LQQSYIEVPLPD----------------------------------------KLDILFSF  283

Query  501  IKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLER  560
            IK H   + I+F  +      + + F +   G        S + LHG +K   R + L++
Sbjct  284  IKSHLKSKLIVFLSSSKQVHFVYETFRKLQPG-------ISLMHLHGRQKQTARTETLDK  336

Query  561  FKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            F +     L  TDV ARGID   V +VI V  P++   Y+HR+GR  R  + G ++ ++ 
Sbjct  337  FSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLT  396

Query  621  TEKEKVWYHVCSSRG  635
             E+E+ +     ++ 
Sbjct  397  PEEEEGFLKRLKTKN  411


 Score = 102 bits (253),  Expect = 5e-21, Method: Composition-based stats.
 Identities = 35/104 (34%), Positives = 52/104 (50%), Gaps = 5/104 (5%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F ++ +  +  + ++E  ++  T+IQ ESIPL L G DVL AA+TGSGKT AF IPVI+ 
Sbjct  43   FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK  102

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            +Y       +G           S   +  M  Y+  S     + 
Sbjct  103  LYREKWTDMDG-----LGALIISPTRELAMQIYEVLSKIGKHTT  141


>sp|Q8SQM5|IF4A_ENCCU ATP-dependent RNA helicase eIF4A OS=Encephalitozoon 
cuniculi (strain GB-M1) OX=284813 GN=TIF1 PE=1 SV=1
Length=425

 Score = 255 bits (652),  Expect = 2e-76, Method: Composition-based stats.
 Identities = 96/424 (23%), Positives = 176/424 (42%), Gaps = 60/424 (14%)

Query  232  VLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP-----  284
             LK   LK  ++ G E   F  K     +    D        +G         L      
Sbjct  44   GLKEDLLKGIYSIGFETPSFIQKAAIQPIIDGRDIRAQAQSGTGKTGAFAVAALQICDMS  103

Query  285  -NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
             +  + L++  +RE+A Q     +    ++     R  L+ GG         LE    IV
Sbjct  104  QDVTQILVLASTREIAAQNAARFEDLGCFMGA---RVALLSGGSPIAADKVALEKKPHIV  160

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            VGTPGR++ +++  +L++  ++  V+DEAD +L  G+ + +  +  +I    ++   +Q+
Sbjct  161  VGTPGRVEHMININELSMDNIKLFVIDEADEMLKAGFQEQVKSIFRRI----TNKDEVQI  216

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
             + SAT    +++ +SE+I+  P  +DL+  D     +    + +  +            
Sbjct  217  AMFSATYDEEELR-VSEEILINPVIIDLRYNDQTLKGIRQYFIDLRKEPP----------  265

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                   E   + K        ++ ++ Q+I+F  +K D   + 
Sbjct  266  ------------------FRKGREDYLLPKLVTLYDIFRKQRLGQSIVFINSKEDARIVY  307

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             + I+         H++ C  +  +    ER++ L RF+ G  R LI + + +RGIDI  
Sbjct  308  DWLIR---------HEWECELISAELTQAERERTLNRFRGGTGRCLISSGLLSRGIDIQN  358

Query  584  VPYVINVTLPD--EKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
            +  V  + +P    K  Y+HRIGR GR  R G+AI++V   + K    +     +  YNT
Sbjct  359  LSVVFCLDVPSFERKSTYIHRIGRSGRYGRKGIAINIVYEHELKNLKAI-----ERFYNT  413

Query  642  RLKE  645
             +KE
Sbjct  414  TIKE  417


 Score = 82.9 bits (203),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 37/62 (60%), Gaps = 0/62 (0%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            + + G+  ++ + +  + +  P+ IQ  +I  I+ G D+   A++G+GKTGAF++  +Q
Sbjct  39  TWEDYGLKEDLLKGIYSIGFETPSFIQKAAIQPIIDGRDIRAQAQSGTGKTGAFAVAALQ  98

Query  63  IV  64
           I 
Sbjct  99  IC  100


>sp|A1DMT9|MAK5_NEOFI ATP-dependent RNA helicase mak5 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=mak5 
PE=3 SV=1
Length=777

 Score = 265 bits (676),  Expect = 2e-76, Method: Composition-based stats.
 Identities = 106/495 (21%), Positives = 191/495 (39%), Gaps = 55/495 (11%)

Query  212  LGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGF---VALSKAP-DGYIV  267
            LGL+ EI   +          ++ A +       +       G    +A      + Y+ 
Sbjct  206  LGLSPEILTGLSKMKFASPTSVQEACIPQILEGHDVIGKASTGSGKTLAFGIPILEHYLE  265

Query  268  KSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
            K +   +A+  +     + P ALI+ P+RELA Q   +I +          R  L+ GG+
Sbjct  266  KKRDDISAEKEKKSEKDSTPIALILSPTRELAHQLSKHIGELIAQAPGVNARIALLTGGL  325

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFI  384
            + + Q  +L  G DIV+GTPGR+ +++STG+     + Q++FLV+DEAD LLS+G+   +
Sbjct  326  SVQKQQRLLS-GADIVIGTPGRVWEILSTGQGLIRKMQQIKFLVVDEADRLLSEGHFKEV  384

Query  385  NRMHNQIPQV----------------TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTW  428
              + N + +V                +      Q +V SAT H    +KL+ K       
Sbjct  385  EEILNALDRVEDGEVPGGENQASEEESDPSSERQTLVFSATFHRDLQQKLAGKG------  438

Query  429  VDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEA  488
                            V+      D L ++L     +   +     ++   N  E   E 
Sbjct  439  ----------KWTGGDVMDKKESMDYLLQKLNFREEKPKFIDMNPISQMADNLKEGIVEC  488

Query  489  IKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGD  548
              + K  +    +  H   + ++F  +                    +  Q   + LH  
Sbjct  489  GAMEKDLFLYTLLLYHPKHRTLVFTNSISAVRR---------LTKLLQTLQLPALALHSS  539

Query  549  RKPHERKQNLERFKKGDVR---FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR  605
                 R +++ERF          L+ TDVAARG+DI G+  VI+   P     YVHR GR
Sbjct  540  MAQKARLRSVERFSSPSSDPSTILVATDVAARGLDIKGINLVIHYHAPRTADTYVHRSGR  599

Query  606  VGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEH  665
              RA   G ++ +   ++      + +       N +        +   + +++S ++  
Sbjct  600  TARAGASGKSVIICGPDEMVGVVRLAAKVHANMANGKKLPLESLEL---DRRVVSRVKPR  656

Query  666  LNCTISQVEPDIKVP  680
            ++      + +I   
Sbjct  657  VSLASRITDANIAKE  671


 Score = 117 bits (293),  Expect = 6e-26, Method: Composition-based stats.
 Identities = 41/160 (26%), Positives = 69/160 (43%), Gaps = 14/160 (9%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++A+  +G+ PEI   + +M +  PT +Q   IP IL G DV+  A TGSGKT AF IP+
Sbjct  200  VSAWDSLGLSPEILTGLSKMKFASPTSVQEACIPQILEGHDVIGKASTGSGKTLAFGIPI  259

Query  61   IQIVYETLKD------QQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSR  114
            ++   E  +D      +++ +K  T I    S   +               + G+  +  
Sbjct  260  LEHYLEKKRDDISAEKEKKSEKDSTPIALILSPTRELAHQLSKHIGELIAQAPGVNARIA  319

Query  115  EVKEWHGCRATKGLMKGK--------HYYEVSCHDQGLCR  146
             +      +  + L+ G           +E+    QGL R
Sbjct  320  LLTGGLSVQKQQRLLSGADIVIGTPGRVWEILSTGQGLIR  359


>sp|O60173|DBP7_SCHPO ATP-dependent RNA helicase dbp7 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp7 
PE=3 SV=1
Length=709

 Score = 263 bits (672),  Expect = 3e-76, Method: Composition-based stats.
 Identities = 99/458 (22%), Positives = 178/458 (39%), Gaps = 46/458 (10%)

Query  206  SKNGKDLGLAFEIPPHMKN-QALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDG  264
            + N   + L  ++  H+ N   +     +++  L      ++     +      ++   G
Sbjct  137  TTNFAGVQLDTQLADHLNNKMNISAPTAIQSCCLPALLNTDDKDAFIE------AQTGSG  190

Query  265  YIVKSQHSGNAQVTQTKFLPN----APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRE  320
              +        ++ +     +       A+I+ P+REL +Q  N   +      +  +  
Sbjct  191  KTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVS  250

Query  321  LLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQG  379
              +IGG   + + + +  GV+I++GTPGRL D + +T  L++SQVR++VLDE D L+  G
Sbjct  251  CNVIGGEKKKSEKARIRKGVNILIGTPGRLADHLENTEALDVSQVRWVVLDEGDRLMDMG  310

Query  380  YSDFINRMHNQIPQVTSDGK-------RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL-  431
            + + + ++ + +   +S  K       R   ++CSAT+    VK+LS+  +    ++   
Sbjct  311  FEETLTKILSYLESQSSIIKKDLSIPSRKVTMLCSATMKDT-VKRLSDSALKDALYLKSS  369

Query  432  ------KGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW  485
                   G    P+ +    V V PK  RL   +                   ++S +  
Sbjct  370  IVEETNDGYSQAPEQLLQRYVVVPPKL-RLVSLVALLRSHVRSYKKIIIFLSCSDSVDFH  428

Query  486  SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL  545
             EA +       +    + K D               E   I         G   +   L
Sbjct  429  FEAFRCAINADEMEEAVKEKPDS--------------EGDIISNAPALRIDGKS-NVYRL  473

Query  546  HGDRKPHERKQNLERFKKGD---VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHR  602
            HG      R   L  F   +      L+CTDVAARG+D+  V  V+    P    +Y+HR
Sbjct  474  HGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLHR  533

Query  603  IGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYN  640
            IGR  RA   G AI  +  ++ +    + SS       
Sbjct  534  IGRTARAGHNGAAIMFLLPKESEYINLLKSSVSANILE  571


 Score = 73.6 bits (179),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 53/135 (39%), Gaps = 10/135 (7%)

Query  2    AAFSEMGVMPEIAQAVE-EMDWLLPTDIQAESIPLIL--GGGDVLMAAETGSGKTGAFSI  58
              F+ + +  ++A  +  +M+   PT IQ+  +P +L     D  + A+TGSGKT A+ +
Sbjct  138  TNFAGVQLDTQLADHLNNKMNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLL  197

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS-----DGLCCQS  113
            P++Q +    K+     +         +   +     Y+  +                  
Sbjct  198  PIVQRLIRLPKNLHT--RTSGIYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIG  255

Query  114  REVKEWHGCRATKGL  128
             E K+    R  KG+
Sbjct  256  GEKKKSEKARIRKGV  270


>sp|Q8X0X2|DBP5_NEUCR ATP-dependent RNA helicase dbp-5 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=dbp-5 PE=3 SV=1
Length=483

 Score = 257 bits (656),  Expect = 3e-76, Method: Composition-based stats.
 Identities = 105/452 (23%), Positives = 179/452 (40%), Gaps = 86/452 (19%)

Query  198  IDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGE--------EEFKF  249
            I++      KN  ++ +      +     L+         L              +  K 
Sbjct  41   IEESQSNLVKNEYEVEIKLSDLQNDTESPLYSVSSFDELGLPEAVNRGLLAINFKKPSKV  100

Query  250  PPKDGFVALSKAPDGYIVKSQHSGNAQ-------VTQTKF-LPNAPKALIVEPSRELAEQ  301
              K   + LS  P   I +SQ             +++     P+ P+AL++ PSRELA Q
Sbjct  101  QEKCLPLMLSDPPRNMIAQSQSGTGKTAAFVLTVLSRIDLSKPHQPQALLLAPSRELARQ  160

Query  302  TLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNL  361
                ++   ++ +N  + E  I G ++    +        +VVGTPG + DLV   + ++
Sbjct  161  IQTVVQTIGQFCEN-LIVEAAIPGAISRETGVRG-----SVVVGTPGTVMDLVKRRQFDI  214

Query  362  SQVRFLVLDEADGLLS-QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
            SQ++ LV+DEAD +L  QG  D   R+ N +P      K +Q+++ SAT     V + +E
Sbjct  215  SQLKVLVIDEADNMLDQQGLGDQCVRVKNMLP------KTIQILLFSATFPD-KVLRFAE  267

Query  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480
            +       + LK ++     +  + +    + D+                          
Sbjct  268  RFAPNANQMKLKHKELTVKGISQMFMDCPTEKDK--------------------------  301

Query  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540
                      IL   Y +  I       ++IF RT+   + +++     G          
Sbjct  302  --------YDILCKLYGLMTI-----GSSVIFVRTRETANEIQKRMEADG---------H  339

Query  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP-------  593
                LHG  +   R   L+ F+ G  + LI T+V ARGID+  V  VIN  +P       
Sbjct  340  KVSALHGAYEGQSRDVLLDEFRSGRSKVLITTNVLARGIDVSSVSMVINYDIPMKGPGER  399

Query  594  -DEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
              + + Y+HRIGR GR  R+G++IS V   + 
Sbjct  400  EPDAETYLHRIGRTGRFGRVGVSISFVHDRRS  431


 Score = 79.0 bits (193),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 54/133 (41%), Gaps = 13/133 (10%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            +++F E+G+   + + +  +++  P+ +Q + +PL+L     +++  +++G+GKT AF +
Sbjct  73   VSSFDELGLPEAVNRGLLAINFKKPSKVQEKCLPLMLSDPPRNMIAQSQSGTGKTAAFVL  132

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQS---RE  115
             V+  +        +  K         +   +                + L  ++     
Sbjct  133  TVLSRI--------DLSKPHQPQALLLAPSRELARQIQTVVQTIGQFCENLIVEAAIPGA  184

Query  116  VKEWHGCRATKGL  128
            +    G R +  +
Sbjct  185  ISRETGVRGSVVV  197


>sp|Q6FPT7|DBP4_CANGA ATP-dependent RNA helicase DBP4 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP4 PE=3 SV=1
Length=765

 Score = 264 bits (675),  Expect = 3e-76, Method: Composition-based stats.
 Identities = 90/448 (20%), Positives = 168/448 (38%), Gaps = 67/448 (15%)

Query  196  LDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGF  255
             D+      F K   DL ++      +   +      ++   +  +              
Sbjct  33   YDVKNNKAVFFK---DLPISKSTLKGLNEASFIKMTDIQRDSIVTSL--------QGHDV  81

Query  256  VALSKAPDGYIVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYID  314
               +K   G  +        ++ + ++   +   ALI+ P+RELA Q    + +   +  
Sbjct  82   FGTAKTGSGKTLAFLVPVLEKLYRERWTEFDGLGALIISPTRELAMQIYEVLVKIGSH--  139

Query  315  NPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEAD  373
              +    L+IGG     +L  +   ++I++GTPGR L  +     LN S ++ LVLDEAD
Sbjct  140  -TQFSAGLVIGGKDVNFELERIAK-INILIGTPGRILQHMDQAVGLNTSNLQMLVLDEAD  197

Query  374  GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG  433
              L  G+   ++ +   +P         Q ++ SAT  S  +  L+   +     +    
Sbjct  198  RCLDMGFQKTLDAIVGNLP------PDRQTLLFSAT-QSQSISDLARLSLTDYKKIGT--  248

Query  434  EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK  493
                        +  +       + L +S+I  D                         K
Sbjct  249  ------------IDSSEDGPATPKTLQQSYIIADLAD----------------------K  274

Query  494  GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
             +     IK H   + I+F  +      + + F +   G        S + LHG +K   
Sbjct  275  LDVLYSFIKSHLKTKMIVFFSSSKQVHFVYETFRKMQPG-------ISLLHLHGRQKQRA  327

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
            R + L++F +     L  TDV ARGID   V +VI V  P++   Y+HR+GR  R  + G
Sbjct  328  RTETLDKFFRAQQVCLFATDVVARGIDFPAVDWVIQVDCPEDVDTYIHRVGRAARYGKKG  387

Query  614  LAISLVATEKEKVWYHVCSSRGKGCYNT  641
             ++ ++  ++E     + + + +    T
Sbjct  388  RSLIILTPQEEAFLTRMAAKKIEPGKLT  415


 Score = 92.1 bits (227),  Expect = 8e-18, Method: Composition-based stats.
 Identities = 28/101 (28%), Positives = 45/101 (45%), Gaps = 5/101 (5%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F ++ +     + + E  ++  TDIQ +SI   L G DV   A+TGSGKT AF +PV++ 
Sbjct  43   FKDLPISKSTLKGLNEASFIKMTDIQRDSIVTSLQGHDVFGTAKTGSGKTLAFLVPVLEK  102

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            +Y     + +G           S   +  M  Y+       
Sbjct  103  LYRERWTEFDG-----LGALIISPTRELAMQIYEVLVKIGS  138


>sp|Q39189|RH7_ARATH DEAD-box ATP-dependent RNA helicase 7 OS=Arabidopsis 
thaliana OX=3702 GN=RH7 PE=1 SV=2
Length=671

 Score = 262 bits (669),  Expect = 3e-76, Method: Composition-based stats.
 Identities = 109/462 (24%), Positives = 190/462 (41%), Gaps = 67/462 (15%)

Query  266  IVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
            I++S  +G A+  +      +P  L++ P+RELA+Q       F  Y  +  L    + G
Sbjct  154  ILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQV---AADFDAYGGSLGLSSCCLYG  210

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            G +   Q   L+ GVDIVVGTPGR+ D +    L+ S ++F VLDEAD +L  G+ + + 
Sbjct  211  GDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVEDVE  270

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIM-HFPTWVDLKGEDSVP--DTVH  442
             +  ++     D  ++Q ++ SATL S+ VK +S + +      +DL G D +   ++V 
Sbjct  271  LILGKV----EDSTKVQTLLFSATLPSW-VKNISNRFLKRDQKTIDLVGNDKMKASNSVR  325

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
            H+ +P N        +   + +  D +    +                            
Sbjct  326  HIAIPCN--------KAAMARLIPDIISCYSS----------------------------  349

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
                 Q IIF  TK+    L                      LHG+    +R+  L  F+
Sbjct  350  ---GGQTIIFAETKVQVSELSGLLD-------------GSRALHGEIPQSQREVTLAGFR  393

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             G    L+ T+VAARG+DI+ V  +I    P E + Y+HR GR GRA   G+A++L  + 
Sbjct  394  NGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAVTLYDSR  453

Query  623  KEKVWYHVCSSRGKGCYNTRLKEDGG--CTIWYNEMQLLSEIEEHLNCTISQVEPDIKVP  680
            K  V   +    G    +    +      +      + + ++ + +     +   ++ + 
Sbjct  454  KSSVS-RIEKEAGIKFEHLAAPQPDEIARSGGMEAAEKVKQVCDSVVPAFLEAAKEL-LE  511

Query  681  VDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKEA  722
                  +V   +  A   G  +     L  +++    L  EA
Sbjct  512  TSGLSAEVLLAKALAKTAGFTEIKKRSLLTSMENYVTLHLEA  553


 Score = 69.8 bits (169),  Expect = 5e-11, Method: Composition-based stats.
 Identities = 20/108 (19%), Positives = 43/108 (40%), Gaps = 1/108 (1%)

Query  5    SEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIV  64
            S+  +   + + ++         IQA +  ++L G D++  A TG GKT AF +P+++ +
Sbjct  99   SKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESL  158

Query  65   YE-TLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
                 K +++   G++          +          A+        C
Sbjct  159  VNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSC  206


>sp|A7TTT5|DBP2_VANPO ATP-dependent RNA helicase DBP2 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=DBP2 PE=3 SV=1
Length=441

 Score = 255 bits (651),  Expect = 4e-76, Method: Composition-based stats.
 Identities = 85/369 (23%), Positives = 147/369 (40%), Gaps = 67/369 (18%)

Query  218  IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQV  277
            +   +K +       ++                     + ++    G  +     G   +
Sbjct  124  VLEEVKAEGFEKPTGIQCQGWPMALS--------GRDMIGVAATGSGKTLSYCLPGIVHI  175

Query  278  TQTKFLP--NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
                 L   + P  L++ P+RELA Q         K+  + ++R   + GGV    Q+  
Sbjct  176  NAQPLLSPGDGPIVLVLAPTRELAVQIQKEC---SKFGSSSRIRNSCVYGGVPRGQQIRE  232

Query  336  LENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
            L  G +IV+ TPGRL D++  GK NL +V +LVLDEAD +L  G+   I ++ +QI    
Sbjct  233  LSRGAEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQI----  288

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG-EDSVPDTVHHVVVPVNPKTDR  454
                  Q ++ SAT    +VK+L+   ++ P  V +   E S    +  +V         
Sbjct  289  --RPDRQTLMWSATWPK-EVKQLAHDYLNDPIQVQIGSLELSASHNITQLV---------  336

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
                                        E+ S+  K  +    +    E K  + ++F  
Sbjct  337  ----------------------------EVVSDFEKRDRLLKHLETASEDKDSKILVFAS  368

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
            TK  CD + +Y  + G         +  + +HGD+   ER   L+ F++G    ++ TDV
Sbjct  369  TKRTCDEVTKYLREDG---------WPALAIHGDKDQRERDWVLQEFREGRSPIMVATDV  419

Query  575  AARGIDIHG  583
            AARGI ++ 
Sbjct  420  AARGIGMYT  428


 Score = 99.0 bits (245),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 44/106 (42%), Gaps = 4/106 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F E G    + + V+   +  PT IQ +  P+ L G D++  A TGSGKT ++ +P 
Sbjct  112  ITSFDEAGFPDYVLEEVKAEGFEKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPG  171

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            I  +      Q     G   I    +   +  +      S F   S
Sbjct  172  IVHI----NAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGSSS  213


>sp|A7TJ71|DBP4_VANPO ATP-dependent RNA helicase DBP4 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=DBP4 PE=3 SV=1
Length=768

 Score = 263 bits (673),  Expect = 5e-76, Method: Composition-based stats.
 Identities = 100/470 (21%), Positives = 189/470 (40%), Gaps = 64/470 (14%)

Query  167  FGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQA  226
            +  T +K   K+  +Y +E      I  Y       V F    KDL ++      + + A
Sbjct  7    YNTTQRKELRKKEVDYIKELETK--IDEYDASINKPVFF----KDLPISNSTLKGLNDSA  60

Query  227  LFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP-N  285
                  ++   +  +    +         +  +K   G  +        ++ + ++   +
Sbjct  61   FLKLTDIQRDSIPMSLKGYD--------ILGAAKTGSGKTLAFLIPVLEKLYRERWTEFD  112

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
               ALI+ P+RELA Q    + +      +      L+IGG   + ++  +   ++I++G
Sbjct  113  GLGALIISPTRELAMQIYEVLLKIG---TSTSFSAGLVIGGKDVKFEMERISK-INILIG  168

Query  346  TPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            TPGR L  +     LN S ++ LVLDEAD  L  G+   ++ + + +P         Q +
Sbjct  169  TPGRILQHMDQAIGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSNLP------PTRQTL  222

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT  S  ++ L+   +     +     D +  +   V+ P  P      E L +S+I
Sbjct  223  LFSAT-QSQSLEDLARLSLTDYKTI--GNPDILNPSNGKVLGPSTP------ETLQQSYI  273

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
              +                         K +     IK H   + I+F  +      + +
Sbjct  274  NVELPD----------------------KLDMLYSFIKSHLKSKMIVFLSSSKQVHFVYE  311

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
             F +   G        S + LHG +K   R + L++F +     L  TDV ARGID   +
Sbjct  312  TFRKMQPG-------ISLMHLHGRQKQKARTETLDKFNRAQHVCLFATDVVARGIDFPAI  364

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
             +V+ V  P++   Y+HR+GR  R  + G ++ ++  ++E+ +    +SR
Sbjct  365  DWVVQVDCPEDVDTYIHRVGRCARYGKQGKSMIMLTPQEEEGFLKRLASR  414


 Score = 94.4 bits (233),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 50/103 (49%), Gaps = 5/103 (5%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F ++ +     + + +  +L  TDIQ +SIP+ L G D+L AA+TGSGKT AF IPV++ 
Sbjct  43   FKDLPISNSTLKGLNDSAFLKLTDIQRDSIPMSLKGYDILGAAKTGSGKTLAFLIPVLEK  102

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            +Y     + +G           S   +  M  Y+        +
Sbjct  103  LYRERWTEFDG-----LGALIISPTRELAMQIYEVLLKIGTST  140


>sp|Q9QY15|DDX25_MOUSE ATP-dependent RNA helicase DDX25 OS=Mus 
musculus OX=10090 GN=Ddx25 PE=1 SV=2
Length=484

 Score = 256 bits (654),  Expect = 5e-76, Method: Composition-based stats.
 Identities = 101/448 (23%), Positives = 174/448 (39%), Gaps = 107/448 (24%)

Query  244  EEEFKFPPKDGFVALSKAPDGYIVKSQHSGN-------AQVTQTKFLPNAPKALIVEPSR  296
                K       + L+  P   I +SQ           A +++   L   P+ L + P+ 
Sbjct  119  NRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQCLCLAPTY  178

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDL-VS  355
            ELA QT   +++  K+     +  +  I G        V +    I++GTPG + D    
Sbjct  179  ELALQTGRVVERMGKFC--VDVEVMYAIRGNRIPRGTEVTK---QIIIGTPGTVLDWCFK  233

Query  356  TGKLNLSQVRFLVLDEADGLLS-QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFD  414
               ++L+++R  VLDEAD ++  QG+SD   R+   +P         Q+++ SAT     
Sbjct  234  RKLIDLTKIRVFVLDEADVMIDTQGFSDQSIRIQRALP------SECQMLLFSATFED-S  286

Query  415  VKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDN  474
            V + +E+I+  P  + L+ E+   + +    V    +                       
Sbjct  287  VWQFAERIIPDPNVIKLRKEELTLNNIRQYYVLCENRKG---------------------  325

Query  475  TRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPD  534
                              K +          + QAIIFC+T+ +   L    +Q G    
Sbjct  326  ------------------KYQALCNIYGGITIGQAIIFCQTRRNAKWLTVEMMQDG----  363

Query  535  KKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP-  593
                      L G+    +R   ++RF+ G  + LI T+V ARGID+  V  V+N  LP 
Sbjct  364  -----HQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPV  418

Query  594  -----DEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGG  648
                  + + Y+HRIGR GR  + GLA +++                             
Sbjct  419  NQSEEPDYETYLHRIGRTGRFGKKGLAFNMI-----------------------------  449

Query  649  CTIWYNEMQLLSEIEEHLNCTISQVEPD  676
                 +++ LL +I++H N  I Q++P+
Sbjct  450  ---EVDKLPLLMKIQDHFNSNIKQLDPE  474


 Score = 65.5 bits (158),  Expect = 9e-10, Method: Composition-based stats.
 Identities = 30/168 (18%), Positives = 67/168 (40%), Gaps = 8/168 (5%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            +  F E+ +  E+ + +  M +  P+ IQ  ++P++L     +++  +++G+GKT AF +
Sbjct  97   VKTFEELRLKEELLKGIYAMGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVL  156

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSA--FAIGSDGLCCQSREV  116
             ++  V       Q      T      +     +M  +       +AI  + +   +   
Sbjct  157  AMLSRVNALELFPQCLCLAPTYELALQTGRVVERMGKFCVDVEVMYAIRGNRIPRGTEVT  216

Query  117  KEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFG  164
            K+      T G +     ++    D    RV +   +A + + T  F 
Sbjct  217  KQI--IIGTPGTVLD-WCFKRKLIDLTKIRV-FVLDEADVMIDTQGFS  260


>sp|A6SBT4|DBP5_BOTFB ATP-dependent RNA helicase dbp5 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=dbp5 PE=3 SV=1
Length=470

 Score = 256 bits (653),  Expect = 6e-76, Method: Composition-based stats.
 Identities = 99/425 (23%), Positives = 167/425 (39%), Gaps = 79/425 (19%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             + LG+   I   +          ++   L                 +A S++  G    
Sbjct  71   FEQLGIDASILKGLYAMNFKKPSKIQEKALPLLLRNPP------TNMIAQSQSGTGKTAA  124

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
               +  +++  +K  P  P+AL + PSRELA Q    I+   +++D   L     I G  
Sbjct  125  FVITILSRLDFSK--PTTPQALCLAPSRELARQIEGVIRSIGQFVDG--LTVQAAIPGAV  180

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLS-QGYSDFINRM  387
             R+     +    +VVGTPG + DL+    ++ SQ++ L LDEAD +L  QG  D   R+
Sbjct  181  ERN----AKVNAMVVVGTPGTVMDLIKRRSIDASQMKILCLDEADNMLDQQGLGDQCMRV  236

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
             + I       +  Q+++ SAT    +V   ++        + LK ++     +  + + 
Sbjct  237  KSMI-------RVEQILLFSATFPD-EVYGFAQDFSPRANEIKLKRDELTVSGIKQMFMD  288

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
               +                                         K E  V+      + 
Sbjct  289  CPNEVG---------------------------------------KYEILVKLYGLMTIG  309

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
             +IIF + +    N+ +   ++G              +HG  +  ER Q LE F++G  +
Sbjct  310  SSIIFVKRRDTASNIAERLTKEG---------HKVAAVHGAFEGSERDQVLEDFRQGKAK  360

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDE--------KQNYVHRIGRVGRAERMGLAISLV  619
             LI T+V ARGID+  V  VIN  +P +         + Y+HRIGR GR  R+G++IS V
Sbjct  361  VLITTNVLARGIDVQSVSMVINYDVPMKGRSDSDPPPETYLHRIGRTGRFGRVGVSISFV  420

Query  620  ATEKE  624
               K 
Sbjct  421  FDRKS  425


 Score = 82.5 bits (202),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 23/116 (20%), Positives = 51/116 (44%), Gaps = 10/116 (9%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            +  F ++G+   I + +  M++  P+ IQ +++PL+L     +++  +++G+GKT AF I
Sbjct  68   VETFEQLGIDASILKGLYAMNFKKPSKIQEKALPLLLRNPPTNMIAQSQSGTGKTAAFVI  127

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSR  114
             ++  +        +  K  T      +   +          +     DGL  Q+ 
Sbjct  128  TILSRL--------DFSKPTTPQALCLAPSRELARQIEGVIRSIGQFVDGLTVQAA  175


>sp|Q9DF36|DD21B_XENLA Nucleolar RNA helicase 2-B OS=Xenopus laevis 
OX=8355 GN=ddx21-b PE=2 SV=2
Length=800

 Score = 264 bits (675),  Expect = 6e-76, Method: Composition-based stats.
 Identities = 107/413 (26%), Positives = 174/413 (42%), Gaps = 63/413 (15%)

Query  232  VLKNAELKFNFGEEEFKF---PPKDGFVALSKAPDGYIVKS---QHSGNAQVTQTKFLPN  285
             L+   + + F  +   F         V  ++   G             ++  Q      
Sbjct  235  NLQAKGVTYLFPIQSKTFHTVYSGKDVVVQARTGTGKTFSFGIPLVERLSEDQQPLARGR  294

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
            AP+ +I+ P+RELA Q  N ++   K     KL+     GG   + Q+  +++G+D +VG
Sbjct  295  APRVIILTPTRELAIQITNELRSMTK-----KLKVACFYGGTPYQQQVFAIKDGIDFLVG  349

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGR+ DLV   +L+L+ ++ +VLDE D +   G+S+ +  + + +       +  Q ++
Sbjct  350  TPGRIRDLVQNYRLDLTALKHVVLDEVDMMFDVGFSEQVEEILS-VRYKPDPEENPQTLL  408

Query  406  CSATLHSFDVKKLSEKIMHF-PTWVDLKG--EDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
             SAT   + +  +++K M      VDL G        TV H+ +  N        R  K+
Sbjct  409  FSATCPDW-MYNVAKKYMRKQYEKVDLVGHRSQKAAITVEHLAIECN--------RSQKA  459

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
             +  D V     +                                + IIFC +K+    L
Sbjct  460  AVLGDIVQVYSGSH------------------------------GKTIIFCDSKLQAHEL  489

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
                       +    + S   LHGD +  ER+  L+ F++G    LI T+VAARG+DI 
Sbjct  490  S---------TNCGSLKQSAKPLHGDLQQKEREVVLKGFRQGTFEVLIATNVAARGLDIP  540

Query  583  GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRG  635
             V  V+  + P E   YVHR GR GRA R G+ ISL    ++    +V  S G
Sbjct  541  EVDLVVLYSAPKEADAYVHRSGRTGRAGRTGVCISLYEPWEKHYLRNVERSTG  593


 Score = 82.1 bits (201),  Expect = 9e-15, Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 54/143 (38%), Gaps = 10/143 (7%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS+  +  +  + ++         IQ+++   +  G DV++ A TG+GKT +F IP+++ 
Sbjct  223  FSKFPISKDTIKNLQAKGVTYLFPIQSKTFHTVYSGKDVVVQARTGTGKTFSFGIPLVER  282

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            + E   DQQ   +G+       +   +  +   +   +        C       +    +
Sbjct  283  LSE---DQQPLARGRAPRVIILTPTRELAIQITNELRSMTKKLKVACFYGGTPYQ----Q  335

Query  124  ATKGLMKGKHYYEVSCHDQGLCR  146
                +  G    +      G  R
Sbjct  336  QVFAIKDGI---DFLVGTPGRIR  355


>sp|Q2UHB7|DBP4_ASPOR ATP-dependent RNA helicase dbp4 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp4 
PE=3 SV=1
Length=796

 Score = 264 bits (674),  Expect = 6e-76, Method: Composition-based stats.
 Identities = 98/463 (21%), Positives = 175/463 (38%), Gaps = 78/463 (17%)

Query  196  LDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGF  255
            LDI + +  FS    DL L+      + +        +++  +                 
Sbjct  38   LDIKETYKSFS----DLPLSEPTASGLASSHFKTLTDIQSRAIGHAL--------KGRDI  85

Query  256  VALSKAPDGYIVKSQHSGNAQVTQTKFLPN-APKALIVEPSRELAEQTLNNIKQFKKYID  314
            +  +K   G  +         + + ++  +    ALI+ P+RELA Q    +++  +Y  
Sbjct  86   LGAAKTGSGKTLAFLIPVLENLYRKQWSEHDGLGALILSPTRELAIQIFEVLRKIGRY--  143

Query  315  NPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEAD  373
                   LIIGG + +++   L   ++I+V TPGR L  L  T   ++  ++ LVLDEAD
Sbjct  144  -HTFSAGLIIGGKSLKEEQERL-GRMNILVCTPGRMLQHLDQTAMFDVFNLQMLVLDEAD  201

Query  374  GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL--  431
             +L  G+   ++ +   +P      K  Q ++ SAT  +  V  L+   +  P +V +  
Sbjct  202  RILDMGFQKTVDAIVGHLP------KERQTLLFSAT-QTKKVSDLARLSLQDPEYVAVHE  254

Query  432  KGEDSVPDTVHH--VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAI  489
                + P T+    VV P++ K D LW                                 
Sbjct  255  TASSATPSTLQQHYVVTPLSQKLDVLWS--------------------------------  282

Query  490  KILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDR  549
                       I+ +   + I+F  +      + + F     G          + LHG +
Sbjct  283  ----------FIRSNLKAKTIVFLSSGKQVRFVYESFRHLQPG-------IPLMHLHGRQ  325

Query  550  KPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA  609
            K   R     +F +     L  TD+ ARG+D   V +VI +  P++   Y+HR+GR  R 
Sbjct  326  KQGGRLDITAKFSQAKHAVLFSTDITARGLDFPAVDWVIQMDCPEDADTYIHRVGRTARY  385

Query  610  ERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIW  652
            ER G A+  +   +E         +        +K +   +I 
Sbjct  386  ERDGRAVLFLDPSEESGMLKRLEQKKVPIERINIKANKQQSIR  428


 Score = 94.0 bits (232),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 33/120 (28%), Positives = 56/120 (47%), Gaps = 8/120 (7%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +FS++ +    A  +    +   TDIQ+ +I   L G D+L AA+TGSGKT AF IPV+
Sbjct  45   KSFSDLPLSEPTASGLASSHFKTLTDIQSRAIGHALKGRDILGAAKTGSGKTLAFLIPVL  104

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYD---RGSAFAIGSDGLCCQSREVKE  118
            + +Y     + +G           S   +  +  ++   +   +   S GL    + +KE
Sbjct  105  ENLYRKQWSEHDG-----LGALILSPTRELAIQIFEVLRKIGRYHTFSAGLIIGGKSLKE  159


>sp|Q650T9|RH7_ORYSJ DEAD-box ATP-dependent RNA helicase 7 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os09g0520700 PE=2 SV=1
Length=696

 Score = 261 bits (668),  Expect = 7e-76, Method: Composition-based stats.
 Identities = 104/412 (25%), Positives = 171/412 (42%), Gaps = 65/412 (16%)

Query  266  IVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
            I++S  +G  + ++       P  L++ P+RELA+Q       F  Y     L    + G
Sbjct  173  ILESLVNGTHKASRRTDYGRPPTVLVLLPTRELAKQVH---TDFAFYGATFGLSACCVYG  229

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            G   R Q   +  GVDIVVGTPGR+ D V  G LN   ++F VLDEAD +L+ G+ D + 
Sbjct  230  GSDYRSQEMAIRKGVDIVVGTPGRVKDFVEKGTLNFRSLKFRVLDEADEMLNMGFVDDVE  289

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF-PTWVDLKGEDSVP--DTVH  442
             +  ++  VT    ++Q ++ SAT+  + VKKLS + +      VDL G++ +    +V 
Sbjct  290  LILGKVEDVT----KVQTLLFSATIPEW-VKKLSLRFLKSGKKTVDLVGDEKLKASASVR  344

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
            H+ +P N        R  ++ +  D +                                 
Sbjct  345  HLALPCN--------RAARAQVIPDIIRCYS-----------------------------  367

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
              +  + IIF  TK    +L                      LHGD    +R+  L  F+
Sbjct  368  --RGGRTIIFTETKESASDLSGLIA-------------GSRALHGDVAQAQREVILAGFR  412

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             G    L+ T+VAARG+DI+ V  +I    P + + Y+HR GR GRA   G+A+ L    
Sbjct  413  SGKFLVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLFEPR  472

Query  623  KEKVWYHVCSSRGKGCYNTRLKEDGGC--TIWYNEMQLLSEIEEHLNCTISQ  672
             +     +    G    +    +      +      + +S + + +     +
Sbjct  473  YKFNVNRIERESGVKFEHISAPQPTDVAQSAGTEAAEAISSVSDSVIPVFRE  524


 Score = 74.0 bits (180),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 20/108 (19%), Positives = 41/108 (38%), Gaps = 1/108 (1%)

Query  5    SEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIV  64
            +   +   + + ++         IQA +  L+L G D++  A TG GKT AF +P+++ +
Sbjct  118  ANFRISESLREKLKSKGIKALFPIQATTFDLVLDGHDLVGRARTGQGKTLAFVLPILESL  177

Query  65   YE-TLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
               T K  +    G+           +     +   + +        C
Sbjct  178  VNGTHKASRRTDYGRPPTVLVLLPTRELAKQVHTDFAFYGATFGLSAC  225


>sp|Q7RZ35|DBP4_NEUCR ATP-dependent RNA helicase dbp-4 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=dbp-4 PE=3 SV=1
Length=823

 Score = 264 bits (675),  Expect = 8e-76, Method: Composition-based stats.
 Identities = 96/437 (22%), Positives = 172/437 (39%), Gaps = 70/437 (16%)

Query  230  ACVLKNAELKFNFGEEEFKFPPKDG---FVALSKAPDGYIVKSQHSGNAQVTQTKFLP-N  285
            A  L+ +  +     +    P        +  ++   G  +        ++ + ++   +
Sbjct  69   ASGLRASHFEVLTDVQRAAIPLALKGQDILGAARTGSGKTLAFLVPVLEKLYRARWTEYD  128

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
               ALI+ P+RELA Q    +++  +   N      L+IGG + +++   L   ++I+V 
Sbjct  129  GLGALIISPTRELAVQIFEVLRKIGR---NHSFSAGLVIGGKSLKEEAERL-GRMNILVC  184

Query  346  TPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            TPGR L  L  T   ++  ++ LVLDEAD ++  G+   ++ +   +P      K  Q +
Sbjct  185  TPGRMLQHLDQTAGFDVDNLQMLVLDEADRIMDMGFQQAVDALVEHLP------KSRQTL  238

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV----HHVVVPVNPKTDRLWERLG  460
            + SAT  S  V  L+   +  P +V +    +    V    H++V P+  K D LW  L 
Sbjct  239  LFSAT-QSKRVSDLARLSLKDPEYVSVHEAAASATPVGLQQHYIVTPLPEKLDTLWGFL-  296

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
                                                     + +   + I+F  +     
Sbjct  297  -----------------------------------------RTNLKSKIIVFMSSGKQVR  315

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             + + F +   G          + LHG +K   R +   RF       L  TDV ARG+D
Sbjct  316  FVYESFKRMQPG-------IPLLHLHGRQKQIARLEITNRFTSAKYSCLFATDVVARGVD  368

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYN  640
               V +VI V  P++   Y+HR+GR  R E  G A+  +   +E+ +      +      
Sbjct  369  FPAVDWVIQVDCPEDADTYIHRVGRTARYESKGRAVLFLDPSEEEGFLKRLEHKKVTVQK  428

Query  641  TRLKEDGGCTIWYNEMQ  657
              +KE+   +I  NE+Q
Sbjct  429  VNVKENKKKSI-KNELQ  444


 Score = 92.1 bits (227),  Expect = 7e-18, Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 8/121 (7%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  FS++ +    A  +    + + TD+Q  +IPL L G D+L AA TGSGKT AF +PV
Sbjct  56   LNKFSDLPLCEPTASGLRASHFEVLTDVQRAAIPLALKGQDILGAARTGSGKTLAFLVPV  115

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG---SDGLCCQSREVK  117
            ++ +Y   + +     G   +    S   +  +  ++           S GL    + +K
Sbjct  116  LEKLY---RARWTEYDGLGAL--IISPTRELAVQIFEVLRKIGRNHSFSAGLVIGGKSLK  170

Query  118  E  118
            E
Sbjct  171  E  171


>sp|A6R9U4|MAK5_AJECN ATP-dependent RNA helicase MAK5 OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=MAK5 PE=3 
SV=1
Length=772

 Score = 263 bits (672),  Expect = 9e-76, Method: Composition-based stats.
 Identities = 108/436 (25%), Positives = 169/436 (39%), Gaps = 50/436 (11%)

Query  212  LGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGF---VALSKAPDGYIVK  268
            LG++ EI   +          ++ A +       +       G    +A       Y +K
Sbjct  192  LGISAEIQTSLSKLRFAKPTPIQTACIPLIASGHDVVGKASTGSGKTLAFGIPILEYYLK  251

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
            ++     Q    +     P ALI+ P+RELA Q   +I        N   R  L+ GG++
Sbjct  252  NRREEPVQHNDAELSSKYPIALILSPTRELAHQLSKHITALCTNAPNINARIALLTGGLS  311

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFIN  385
             + Q  VL N  DIV+GTPGRL D++STG         ++FLV+DEAD LLS+G+   + 
Sbjct  312  VQKQQRVLAN-ADIVIGTPGRLWDVISTGHGLLRKFQNIKFLVIDEADRLLSEGHFKEVE  370

Query  386  RMHNQIPQVTSDGK---------------RLQVIVCSATLHSFDVKKLSEKIMHFPTWVD  430
             +   + +     K                 Q +V SAT H    +KL+ K  +F     
Sbjct  371  EILTALDRKEIHHKVTADSESEDDASRESPRQTLVFSATFHKGLQQKLAGKGRYF-----  425

Query  431  LKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIK  490
                          ++      + L ++L     R   +      +   N  E   E   
Sbjct  426  -----------DGDLLDDKQSMEYLLKKLNFREDRPKFIDVNPVAQMAENLKEGLVECPA  474

Query  491  ILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRK  550
            + K  Y    +  H   + ++F  +      L  +                 + LH    
Sbjct  475  MEKDLYLYTLMLYHPQHRTLVFTNSISAVRRLTAFLQNL---------NLPALALHSSMA  525

Query  551  PHERKQNLERFKK---GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVG  607
               R +++ERF          L+ TDVAARG+DI G+  +I+  +P     YVHR GR  
Sbjct  526  QKARLRSVERFSSPTADPSSILVATDVAARGLDIKGIDLIIHYHVPRTADTYVHRSGRTA  585

Query  608  RAERMGLAISLVATEK  623
            RA   G +I L A E+
Sbjct  586  RASASGKSILLCAPEE  601


 Score = 102 bits (253),  Expect = 5e-21, Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 63/159 (40%), Gaps = 13/159 (8%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++ +  +G+  EI  ++ ++ +  PT IQ   IPLI  G DV+  A TGSGKT AF IP+
Sbjct  186  VSGWDPLGISAEIQTSLSKLRFAKPTPIQTACIPLIASGHDVVGKASTGSGKTLAFGIPI  245

Query  61   IQIVYETLKD-----QQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDG------L  109
            ++   +  ++            K  I    S   +         +A    +        L
Sbjct  246  LEYYLKNRREEPVQHNDAELSSKYPIALILSPTRELAHQLSKHITALCTNAPNINARIAL  305

Query  110  CCQSREVKEWHGCRATKGLMKGK--HYYEVSCHDQGLCR  146
                  V++     A   ++ G     ++V     GL R
Sbjct  306  LTGGLSVQKQQRVLANADIVIGTPGRLWDVISTGHGLLR  344


>sp|Q0UMB6|DBP10_PHANO ATP-dependent RNA helicase DBP10 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=DBP10 PE=3 SV=1
Length=878

 Score = 265 bits (677),  Expect = 1e-75, Method: Composition-based stats.
 Identities = 94/417 (23%), Positives = 159/417 (38%), Gaps = 33/417 (8%)

Query  228  FPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN--  285
            F A  L  A LK    ++ FK P      A+     G  V       +  T    +P   
Sbjct  80   FQAMGLNVALLK-AIAQKGFKIPTPIQRKAVPLILQGDDVVGMARTGSGKTAAFVIPMIE  138

Query  286  ---------APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL  336
                       + +I+ PSRELA QTL  +K+F +      LR +L++GG +  +Q + +
Sbjct  139  RLKTHSAKVGARGVIMSPSRELALQTLKVVKEFGR---GTDLRTILLVGGDSLEEQFNSM  195

Query  337  ENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTS  396
                DI++ TPGR   L     L+LS V+++V DEAD L   G++  +  +   +P    
Sbjct  196  TTNPDIIIATPGRFLHLKVEMGLDLSSVQYIVFDEADRLFEMGFAAQLAEILYALPTS--  253

Query  397  DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLW  456
                 Q ++ SATL    V+  +   +  P  + L  E  +   +      +        
Sbjct  254  ----RQTLLFSATLPKSLVE-FARAGLQEPKLIRLDAESKISPDLKSAYFTIKSGDRDGA  308

Query  457  ERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTK  516
                  ++    V   +  +      +  S+  K  +G    +       +  IIF  TK
Sbjct  309  LIHLLENVIKMPVGQTEVWKQAKEEADNLSKGKKRKRGSGNPK--DAPVEESTIIFAATK  366

Query  517  IDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAA  576
               + L       G         +    ++G+     R++ ++ F+ G  R L+ TDVAA
Sbjct  367  HRVEYLSTLLKAAG---------YPVSYVYGNLDQTARQEQVKDFRAGLTRILVVTDVAA  417

Query  577  RGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
            RG           + LP   +N     G  G     GL I  V T +  + + + + 
Sbjct  418  RGYRHATHKPRHQLRLPFSTKNLCSSSGEDGPRWAEGLGIQPVQTCRSAISHRLTNV  474


 Score = 100 bits (249),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 31/104 (30%), Positives = 48/104 (46%), Gaps = 7/104 (7%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F  MG+   + +A+ +  + +PT IQ +++PLIL G DV+  A TGSGKT AF IP+I+ 
Sbjct  80   FQAMGLNVALLKAIAQKGFKIPTPIQRKAVPLILQGDDVVGMARTGSGKTAAFVIPMIER  139

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            +                     S   +  +        F  G+D
Sbjct  140  LKTHSAKV-------GARGVIMSPSRELALQTLKVVKEFGRGTD  176


>sp|Q6FKS8|SPB4_CANGA ATP-dependent rRNA helicase SPB4 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=SPB4 PE=3 SV=1
Length=617

 Score = 259 bits (662),  Expect = 1e-75, Method: Composition-based stats.
 Identities = 81/386 (21%), Positives = 153/386 (40%), Gaps = 52/386 (13%)

Query  277  VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI--DNPKLRELLIIGG--VAARDQ  332
            +  +KF      +LI+ P+REL+ Q  N +  F ++   D   +R  L++G    + RD 
Sbjct  74   INNSKFKKGHFYSLILAPTRELSMQIQNVVSSFLEHYPEDQYPIRSQLVVGTNEKSVRDD  133

Query  333  LS-VLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQI  391
            ++ +L+    I++GTPGR+ D + +  +  S    +VLDEAD LL   +   + ++ N +
Sbjct  134  VNTLLDERPQILIGTPGRVLDFLQSPSVKTSSCGMVVLDEADRLLDVSFFKDVEKILNVL  193

Query  392  PQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPK  451
            P      K+ +  + SAT+ S       +  +  P  + +  +     T  ++   V   
Sbjct  194  P------KQRRTGLFSATISSAGTLIF-KTGLRNPVKITVNSQGKNAPTTLNLFYSVMKP  246

Query  452  TDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAII  511
             ++L                                       +  +  +   +  + I+
Sbjct  247  EEKL---------------------------------------QNLIHIMNNIRFKKCIV  267

Query  512  FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR-FLI  570
            +  T +      QY                 + +HG      R++ L  F +      L+
Sbjct  268  YFSTCVSVTFFYQYLKYLQQTDKTLREDLQVISIHGKLTTQSRRKALSTFTESLSDCILL  327

Query  571  CTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
             TDVAARGIDI  V  V+ +  P +   ++HR GR GRA ++G AI  +   +E+ +   
Sbjct  328  TTDVAARGIDIPDVDLVLQIDPPTDADIFLHRCGRTGRANKIGRAIVFLNEGREEDYIPF  387

Query  631  CSSRGKGCYNTRLKEDGGCTIWYNEM  656
               +      T + ++       +E 
Sbjct  388  MEVKNVDIEETDINKNKISNDNNDEF  413


 Score = 91.3 bits (225),  Expect = 9e-18, Method: Composition-based stats.
 Identities = 27/101 (27%), Positives = 50/101 (50%), Gaps = 3/101 (3%)

Query  4    FSEMG--VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            ++++   + P I +A+    +   T +QA +IP+     DV++ + TGSGKT AF IP++
Sbjct  7    WADLDYELQPWIKKAINVSGFDSMTPVQASTIPMFAKNKDVVVESVTGSGKTIAFVIPIL  66

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            + +     +  + KKG       A    +  M   +  S+F
Sbjct  67   EKIISEGINNSKFKKGHFYSLILA-PTRELSMQIQNVVSSF  106


>sp|A2YV85|RH29_ORYSI DEAD-box ATP-dependent RNA helicase 29 OS=Oryza 
sativa subsp. indica OX=39946 GN=OsI_028228 PE=2 SV=2
Length=851

 Score = 264 bits (675),  Expect = 1e-75, Method: Composition-based stats.
 Identities = 100/440 (23%), Positives = 165/440 (38%), Gaps = 70/440 (16%)

Query  219  PPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVT  278
                     F +  L   E+      + ++ P      A+     G+ + +     +  T
Sbjct  42   SKKKAKSGGFESMGLCE-EVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKT  100

Query  279  QTKFLP-----------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
                +P              +ALI+ P+R+LA QTL   +Q  K+ D   L+  LI+GG 
Sbjct  101  AAFLVPMIQRLRRHDAGAGIRALILSPTRDLATQTLKFAQQLGKFTD---LKISLIVGGD  157

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
            +   Q   L    DI++ TPGRL   +     LNL  V ++V DEAD L S G    ++ 
Sbjct  158  SMESQFEELAENPDIIIATPGRLVHHLAEVEDLNLRTVEYVVFDEADSLFSLGLIQQLHD  217

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVV  446
            + +++          Q ++ SATL    +   ++  +  P  V L  +  +   +     
Sbjct  218  ILHKLSDT------RQTLLFSATLPQA-LADFAKAGLRDPQIVRLDLDKKISPDLKLAFF  270

Query  447  PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM  506
             +  +                                      K+    Y VR  +    
Sbjct  271  TLRQEE-------------------------------------KLAALLYLVRE-RISSE  292

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
            +Q IIF  TK   + L   F ++G  P            +G      R  ++ +F+    
Sbjct  293  EQTIIFVSTKHHVEFLNILFREEGLEPSLS---------YGAMDQEARNIHISKFRARKT  343

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
              LI TDVAARG+DI  +  V+N   P + + +VHR+GRV R  R G A + V +E    
Sbjct  344  MILIVTDVAARGLDIPLLDNVVNWDFPAKPKLFVHRVGRVARQGRSGTAYTFVTSEDMAY  403

Query  627  WYHVCSSRGKGCYNTRLKED  646
               +     K       +E+
Sbjct  404  LLDLHLFLSKPLRPAPTEEE  423


 Score = 95.2 bits (235),  Expect = 8e-19, Method: Composition-based stats.
 Identities = 30/104 (29%), Positives = 43/104 (41%), Gaps = 7/104 (7%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F  MG+  E+ + V    + +PT IQ +++PLIL G D+   A TGSGKT AF +P+IQ 
Sbjct  51   FESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQR  110

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            +            G        S                   +D
Sbjct  111  LRRHD-------AGAGIRALILSPTRDLATQTLKFAQQLGKFTD  147


>sp|Q75C76|DBP4_EREGS ATP-dependent RNA helicase DBP4 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DBP4 PE=3 SV=2
Length=763

 Score = 262 bits (670),  Expect = 1e-75, Method: Composition-based stats.
 Identities = 94/458 (21%), Positives = 174/458 (38%), Gaps = 62/458 (14%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             +DL ++      +K  A      ++ A +       +         +  +K   G  + 
Sbjct  43   FQDLPISSGTVKGLKEAAYIKMTDIQRAAIPVALKGHD--------VLGAAKTGSGKTLA  94

Query  269  SQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
                   ++   ++   +   AL++ P+RELA Q    + +  KY+        L+IGG 
Sbjct  95   FLVPVLEKLYHERWTELDGLGALVISPTRELAMQIYEVLVKIGKYMS---FSAGLVIGGK  151

Query  328  AARDQLSVLENGVDIVVGTPGRLD-DLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
              + ++  +   ++I++GTPGRL   +  +  LN S ++ LVLDEAD  L  G+   ++ 
Sbjct  152  DVKFEMERVSK-INILIGTPGRLLQHMDQSVGLNTSNLQILVLDEADRCLDMGFKKALDA  210

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVV  446
            + + +P         Q ++ SAT  S  +  L+   +     V                 
Sbjct  211  IVSNLP------PSRQTLLFSAT-QSQSLADLARLSLADYKTVGTMD------------G  251

Query  447  PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM  506
            P +       E L + +I+                           K +     IK H  
Sbjct  252  PSSKNKPATPENLEQFYIQVALPD----------------------KLDILFSFIKSHLK  289

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
             + I+F  +      + + F +   G        S + LHG +K   R + L++F +   
Sbjct  290  SKMIVFLSSSKQVHFVYETFRKMQPG-------ISLMHLHGRQKQTARTETLDKFSRAQH  342

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
              L  TDV ARGID   V +VI    P++   Y+HR GR  R  + G ++ ++  ++E  
Sbjct  343  VCLFSTDVVARGIDFPSVDWVIQTDCPEDVDTYIHRAGRSARYGKTGKSLLMLTPQEEDA  402

Query  627  WYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEE  664
            +      +        +K+    +I      LL +  E
Sbjct  403  FLARLKGKLIEPSKLNIKQSKRKSIKPQLQSLLFKDPE  440


 Score = 101 bits (251),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 35/118 (30%), Positives = 58/118 (49%), Gaps = 8/118 (7%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F ++ +     + ++E  ++  TDIQ  +IP+ L G DVL AA+TGSGKT AF +PV++
Sbjct  42   TFQDLPISSGTVKGLKEAAYIKMTDIQRAAIPVALKGHDVLGAAKTGSGKTLAFLVPVLE  101

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYD---RGSAFAIGSDGLCCQSREVK  117
             +Y     + +G           S   +  M  Y+   +   +   S GL    ++VK
Sbjct  102  KLYHERWTELDG-----LGALVISPTRELAMQIYEVLVKIGKYMSFSAGLVIGGKDVK  154


>sp|Q0CMM5|DBP4_ASPTN ATP-dependent RNA helicase dbp4 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dbp4 
PE=3 SV=2
Length=804

 Score = 263 bits (672),  Expect = 1e-75, Method: Composition-based stats.
 Identities = 98/478 (21%), Positives = 180/478 (38%), Gaps = 79/478 (17%)

Query  196  LDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGF  255
            LD+ +    F+    DL L+      +          +++  +                 
Sbjct  39   LDLKESFKAFT----DLPLSEPTLSGLSASHYKTLTDIQSRAVSHAL--------KGRDI  86

Query  256  VALSKAPDGYIVKSQHSGNAQVTQTKFLPN-APKALIVEPSRELAEQTLNNIKQFKKYID  314
            +  +K   G  +         + + ++  +    ALI+ P+RELA Q    +++  +Y  
Sbjct  87   LGAAKTGSGKTLAFLIPVLENLYRKQWAEHDGLGALILSPTRELAIQIFEVLRKVGRY--  144

Query  315  NPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEAD  373
                   L+IGG + +++   L   ++I+V TPGR L  L  T   +   ++ LVLDEAD
Sbjct  145  -HHFSAGLVIGGKSLKEEQERLGK-MNILVCTPGRMLQHLDQTALFDTYNLQMLVLDEAD  202

Query  374  GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK-  432
             ++  G+   ++ +   +P      K  Q ++ SAT  +  V  L+   +  P +V +  
Sbjct  203  RIMDMGFQKTVDAIIGHLP------KERQTMLFSAT-QTKKVSDLARLSLQDPEYVAVHE  255

Query  433  -GEDSVPDTVHH--VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAI  489
                + P T+    VV P+  K D LW                                 
Sbjct  256  AAASATPSTLQQHYVVTPLPQKLDILWS--------------------------------  283

Query  490  KILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDR  549
                       I+ +   + I+F  +      + + F     G          + LHG +
Sbjct  284  ----------FIRSNLKSKTIVFLSSGKQVRFVYEAFRHLQPG-------IPLMHLHGRQ  326

Query  550  KPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA  609
            K   R     ++ +     L  TDVAARG+D   V +VI +  P++   Y+HR+GR  R 
Sbjct  327  KQGGRLDITTKYSQAKHAVLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARY  386

Query  610  ERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLN  667
            ER G A+  +   +E+        +        +K +   +I  N++Q +   +  L 
Sbjct  387  ERDGRAVLFLDPSEEQGMLKRLEQKKVPVEKINVKANKQQSI-KNQLQNMCFKDPELK  443


 Score = 91.3 bits (225),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 31/120 (26%), Positives = 55/120 (46%), Gaps = 8/120 (7%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             AF+++ +       +    +   TDIQ+ ++   L G D+L AA+TGSGKT AF IPV+
Sbjct  46   KAFTDLPLSEPTLSGLSASHYKTLTDIQSRAVSHALKGRDILGAAKTGSGKTLAFLIPVL  105

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYD---RGSAFAIGSDGLCCQSREVKE  118
            + +Y     + +G           S   +  +  ++   +   +   S GL    + +KE
Sbjct  106  ENLYRKQWAEHDG-----LGALILSPTRELAIQIFEVLRKVGRYHHFSAGLVIGGKSLKE  160


>sp|O61305|DDX19_DROME DEAD-box helicase Dbp80 OS=Drosophila melanogaster 
OX=7227 GN=Dbp80 PE=1 SV=1
Length=460

 Score = 254 bits (649),  Expect = 2e-75, Method: Composition-based stats.
 Identities = 105/441 (24%), Positives = 162/441 (37%), Gaps = 79/441 (18%)

Query  227  LFPACVLKNAELKFNFG---EEEFKFPPKDGFVALSKAPDGYIVKSQHSGN-------AQ  276
             F A  LK + LK  +        K         L+  P   I +SQ           A 
Sbjct  74   TFEALHLKASLLKGIYAMGFNTPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM  133

Query  277  VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL  336
            +++     N P+ L + P+ ELA QT     +  ++    KLR    + G        + 
Sbjct  134  LSRVNVCLNHPQVLCLSPTYELAIQTGEVAARMGQFCREIKLRFA--VRGEEVDRSKKIE  191

Query  337  ENGVDIVVGTPGRLDDL-VSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQIPQV  394
            E    I++GTPG+L D  +     ++ ++   VLDEAD ++ +QG+ D   R+H  +   
Sbjct  192  E---HILIGTPGKLLDWGIKFRLFDMKKISVFVLDEADVMIATQGHHDQCIRIHKML---  245

Query  395  TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDR  454
                   Q++  SAT    +V   +  I+  PT + L  E+   + +    V    +   
Sbjct  246  ---NPHCQMLFFSATYGK-EVMDFARLIVADPTIIRLMREEESLENIKQYYVKCKNEEG-  300

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
                                                  K            + QAIIFC 
Sbjct  301  --------------------------------------KYNAIQNIYGCISVGQAIIFCH  322

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
            TK     L       G          S   L GD    +R   L+RF+ G  + LI T++
Sbjct  323  TKRTAAWLAAKMTSDG---------HSVAVLTGDLTVVQRLDVLDRFRSGLEKVLITTNI  373

Query  575  AARGIDIHGVPYVINVTLP------DEKQNYVHRIGRVGRAERMGLAISLVATEKE-KVW  627
             +RGIDI  +  V+N  LP       + + Y+HRIGR GR  + G+AI+L+  EK  KV 
Sbjct  374  LSRGIDIEQLQVVVNFDLPVDLDGMADCETYLHRIGRTGRFGKSGIAINLITDEKTMKVC  433

Query  628  YHVCSSRGKGCYNTRLKEDGG  648
              +     K            
Sbjct  434  SDIEKHFNKKIEVLNTDSADD  454


 Score = 83.3 bits (204),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 24/129 (19%), Positives = 49/129 (38%), Gaps = 2/129 (2%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            +  F  + +   + + +  M +  P+ IQ  ++P +L     +++  +++G+GKT AF +
Sbjct  72   VKTFEALHLKASLLKGIYAMGFNTPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL  131

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKE  118
             ++  V   L   Q      T      +     +M  + R         G      +  E
Sbjct  132  AMLSRVNVCLNHPQVLCLSPTYELAIQTGEVAARMGQFCREIKLRFAVRGEEVDRSKKIE  191

Query  119  WHGCRATKG  127
             H    T G
Sbjct  192  EHILIGTPG  200


>sp|A3BT52|RH29_ORYSJ DEAD-box ATP-dependent RNA helicase 29 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os08g0416100 PE=2 
SV=2
Length=851

 Score = 264 bits (674),  Expect = 2e-75, Method: Composition-based stats.
 Identities = 100/440 (23%), Positives = 165/440 (38%), Gaps = 70/440 (16%)

Query  219  PPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVT  278
                     F +  L   E+      + ++ P      A+     G+ + +     +  T
Sbjct  42   SKRKAKSGGFESMGLCE-EVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKT  100

Query  279  QTKFLP-----------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
                +P              +ALI+ P+R+LA QTL   +Q  K+ D   L+  LI+GG 
Sbjct  101  AAFLVPMIQRLRRHDAGAGIRALILSPTRDLATQTLKFAQQLGKFTD---LKISLIVGGD  157

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
            +   Q   L    DI++ TPGRL   +     LNL  V ++V DEAD L S G    ++ 
Sbjct  158  SMESQFEELAENPDIIIATPGRLVHHLAEVEDLNLRTVEYVVFDEADSLFSLGLIQQLHD  217

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVV  446
            + +++          Q ++ SATL    +   ++  +  P  V L  +  +   +     
Sbjct  218  ILHKLSDT------RQTLLFSATLPQA-LADFAKAGLRDPQIVRLDLDKKISPDLKLAFF  270

Query  447  PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM  506
             +  +                                      K+    Y VR  +    
Sbjct  271  TLRQEE-------------------------------------KLAALLYLVRE-RISSE  292

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
            +Q IIF  TK   + L   F ++G  P            +G      R  ++ +F+    
Sbjct  293  EQTIIFVSTKHHVEFLNILFREEGLEPSLS---------YGAMDQEARNIHISKFRARKT  343

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
              LI TDVAARG+DI  +  V+N   P + + +VHR+GRV R  R G A + V +E    
Sbjct  344  MILIVTDVAARGLDIPLLDNVVNWDFPAKPKLFVHRVGRVARQGRSGTAYTFVTSEDMAY  403

Query  627  WYHVCSSRGKGCYNTRLKED  646
               +     K       +E+
Sbjct  404  LLDLHLFLSKPLRPAPTEEE  423


 Score = 95.2 bits (235),  Expect = 9e-19, Method: Composition-based stats.
 Identities = 30/104 (29%), Positives = 43/104 (41%), Gaps = 7/104 (7%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F  MG+  E+ + V    + +PT IQ +++PLIL G D+   A TGSGKT AF +P+IQ 
Sbjct  51   FESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQR  110

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            +            G        S                   +D
Sbjct  111  LRRHD-------AGAGIRALILSPTRDLATQTLKFAQQLGKFTD  147


>sp|Q5BFU1|DBP4_EMENI ATP-dependent RNA helicase dbp4 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=dbp4 PE=3 SV=1
Length=812

 Score = 263 bits (672),  Expect = 2e-75, Method: Composition-based stats.
 Identities = 98/478 (21%), Positives = 178/478 (37%), Gaps = 79/478 (17%)

Query  196  LDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGF  255
            LD+   +  FS    DL ++      + +        +++  +                 
Sbjct  41   LDLKAKYESFS----DLPISEPTLSGLTSSHFKTLTDIQSRAISHAL--------KGRDV  88

Query  256  VALSKAPDGYIVKSQHSGNAQVTQTKFLPN-APKALIVEPSRELAEQTLNNIKQFKKYID  314
            +  +K   G  +         + + ++  +    ALI+ P+RELA Q    +++  +Y  
Sbjct  89   LGAAKTGSGKTLAFLVPILENLYRKQWSDHDGLGALIISPTRELAIQIFEVLRKIGRY--  146

Query  315  NPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEAD  373
                   L+IGG + +++   L   ++I+V TPGR L  L  T       ++ LVLDEAD
Sbjct  147  -HTFSAGLVIGGKSLKEEQERL-GRMNILVCTPGRMLQHLDQTAFFETYNLQMLVLDEAD  204

Query  374  GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK-  432
             ++  G+   ++ +   +P         Q ++ SAT  +  V  L+   +  P +V +  
Sbjct  205  RIMDMGFQKTVDAIIGHLP------PERQTLLFSAT-QTKKVSDLARLSLQDPEYVAVHE  257

Query  433  -GEDSVPDTVHH--VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAI  489
                + P  +    VV P+  K D LW                                 
Sbjct  258  AASSATPSKLQQHYVVTPLPQKLDTLWS--------------------------------  285

Query  490  KILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDR  549
                       I+ +   + I+F  +      + + F     G          + LHG +
Sbjct  286  ----------FIRSNLKSKTIVFMSSGKQVRFVYESFRHMQPG-------IPLLHLHGRQ  328

Query  550  KPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA  609
            K   R     RF +     L  TDVAARG+D   V +VI +  P++   Y+HR+GR  R 
Sbjct  329  KQGGRLDITTRFSQAQHAVLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARY  388

Query  610  ERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLN  667
            ER G A+  +   +EK        +        ++ +   +I  N++Q +   +  L 
Sbjct  389  ERDGRAVLFLDPSEEKGMLRRLEQKRVTVERINVRANKQQSI-KNQLQNMCFKDPELK  445


 Score = 96.4 bits (238),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 8/119 (7%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +FS++ +       +    +   TDIQ+ +I   L G DVL AA+TGSGKT AF +P+++
Sbjct  49   SFSDLPISEPTLSGLTSSHFKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPILE  108

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYD---RGSAFAIGSDGLCCQSREVKE  118
             +Y       +G           S   +  +  ++   +   +   S GL    + +KE
Sbjct  109  NLYRKQWSDHDG-----LGALIISPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLKE  162


>sp|Q9VD51|DDX18_DROME Probable ATP-dependent RNA helicase pitchoune 
OS=Drosophila melanogaster OX=7227 GN=pit PE=2 SV=2
Length=680

 Score = 260 bits (664),  Expect = 2e-75, Method: Composition-based stats.
 Identities = 92/504 (18%), Positives = 187/504 (37%), Gaps = 68/504 (13%)

Query  216  FEIPPHMKNQALFPACV-LKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN  274
            F       ++A   A   +   E+     +           V  ++   G  +       
Sbjct  187  FASLKGAVSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAV  246

Query  275  AQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQL  333
              + + +F+P N    +I+ P+REL+ QT   +K+   +  +      L++GG   + + 
Sbjct  247  ELINKLRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTY---GLVMGGSNRQVES  303

Query  334  SVLENGVDIVVGTPGRLDDLVSTGKLNL-SQVRFLVLDEADGLLSQGYSDFINRMHNQIP  392
              L  G++I+V TPGRL D +      L   ++ L++DE D +L  G+ + + ++ N +P
Sbjct  304  EKLGKGINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLP  363

Query  393  QVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH-FPTWVDLKG--EDSVPDTVHHVVVPVN  449
                  KR Q ++ SAT  +  ++ LS+  +   P +V +    + +  D +    +   
Sbjct  364  ------KRRQTMLFSAT-QTARIEALSKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCP  416

Query  450  PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA  509
             +   L                                             +K+++  + 
Sbjct  417  SEKRLLV----------------------------------------LFTFLKKNRKKKV  436

Query  510  IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL  569
            ++F  + +      + F                  +HG +K  +R     +F   +   L
Sbjct  437  MVFFSSCMSVKYHHELF---------NYIDLPVTSIHGKQKQTKRTTTFFQFCNAESGIL  487

Query  570  ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR-AERMGLAISLVATEKEKVWY  628
            +CTDVAARG+DI  V +++    PD+ + Y+HR+GR  R +   G A+ L+  E+     
Sbjct  488  LCTDVAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMRPEELGFLR  547

Query  629  HVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKV  688
            ++ +++                I     +L+++    LN +  +         D    K 
Sbjct  548  YLKAAK-VPLNEFEFSWQKIADIQLQLEKLIAKNY-FLNQSAKEAFKSYVRAYDSHQLKQ  605

Query  689  TYGQKRAAGGGSYKGHVDILAPTV  712
             +           K    ++ P V
Sbjct  606  IFNVNTLDLQAVAKSFGFLVPPVV  629


 Score = 94.4 bits (233),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 28/97 (29%), Positives = 51/97 (53%), Gaps = 7/97 (7%)

Query  2    AAFSEMG--VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
             +F+ +   V     +A++EM +   T+IQ++S+  +L G D++ AA+TGSGKT AF IP
Sbjct  185  RSFASLKGAVSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIP  244

Query  60   VIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
             ++++ +     + G     T     S   +  M  +
Sbjct  245  AVELINKLRFMPRNG-----TGVIIISPTRELSMQTF  276


>sp|Q0DBS1|RH51_ORYSJ Putative DEAD-box ATP-dependent RNA helicase 
51 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0535100 
PE=3 SV=2
Length=590

 Score = 258 bits (658),  Expect = 2e-75, Method: Composition-based stats.
 Identities = 88/381 (23%), Positives = 168/381 (44%), Gaps = 50/381 (13%)

Query  256  VALSKAPDGYIVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYID  314
            +A +K   G  +         + + +F P N    +++ P+RELA QT N  K+  +Y  
Sbjct  127  MASAKTGSGKTLAFLIPAIELLCRLRFSPRNGTGVIVLCPTRELAIQTHNVAKELMRYHS  186

Query  315  NPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEAD  373
                    +IGG+  R +   L  G++++V TPGRL D +  T       ++ L++DEAD
Sbjct  187  QTL---GYVIGGIDLRGEAEQLAKGINVLVATPGRLLDHMQKTKSFKYECLKCLIIDEAD  243

Query  374  GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG  433
             +L Q + + + ++   +P+     +  Q ++ SAT  +  V+  ++        +    
Sbjct  244  RILEQNFEEQMKQIFKLLPR-----QGRQTVLFSAT-QTEKVEDFAK--------LTFGS  289

Query  434  EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK  493
            ++    T+ +V V  + ++    E L + +                      SE   ++ 
Sbjct  290  KEERQRTLVYVGVD-DHESKATVEGLKQGYCVIP------------------SERRFLVL  330

Query  494  GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
              +  +A+ E    + ++F  +        Q              Q  C  +HG  K H+
Sbjct  331  YAFLKKALSEKT--KVMVFFSSCNSVKFHAQLL---------NFIQIECYDIHGQLKQHQ  379

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER-M  612
            R     +F K +   L+CT+VAARG+DI  V Y++    PDE ++Y+HR+GR  R +   
Sbjct  380  RTSTFFKFHKAEHGILLCTNVAARGLDIPDVDYIVQYDPPDETKDYIHRVGRTARGDNGK  439

Query  613  GLAISLVATEKEKVWYHVCSS  633
            G AI  +  ++ ++  H+ ++
Sbjct  440  GSAILFLLPKELQLLIHLKAA  460


 Score = 92.5 bits (228),  Expect = 4e-18, Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 50/99 (51%), Gaps = 5/99 (5%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS++ +    A A+ +M++   T+IQA SIP ++ G DV+ +A+TGSGKT AF IP I++
Sbjct  88   FSDLPISDLTANAIRDMNYTHLTEIQARSIPPLMLGSDVMASAKTGSGKTLAFLIPAIEL  147

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            +       + G     T         +  +  ++     
Sbjct  148  LCRLRFSPRNG-----TGVIVLCPTRELAIQTHNVAKEL  181


>sp|Q2FY15|CSHB_STAA8 DEAD-box ATP-dependent RNA helicase CshB 
OS=Staphylococcus aureus (strain NCTC 8325 / PS 47) OX=93061 
GN=cshB PE=3 SV=1
Length=448

 Score = 253 bits (646),  Expect = 3e-75, Method: Composition-based stats.
 Identities = 100/477 (21%), Positives = 187/477 (39%), Gaps = 74/477 (16%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             +   L   +   +K+        ++N  +                 +  S+   G   K
Sbjct  6    FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTN--------LIGQSQTGTG---K  54

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
            S       +         P+A++V P+RELA+Q  +      ++     ++    IGG  
Sbjct  55   SHAFLLPLMQLIDSEIKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKV--FIGGTD  112

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
                         +++GTP R++DL  TG L++    +LV+DEAD ++  G  + ++ + 
Sbjct  113  IEKDRQRCNAQPQLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIA  172

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
             ++           + V SAT+    ++    K +  P +V +  +      +   ++P 
Sbjct  173  ARL------EDNANIAVFSATIP-QQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFYLIP-  224

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
                                                        K E  +  I       
Sbjct  225  ---------------------------------------TKGAAKVEKTLNLIDILNPYL  245

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
             IIFC ++ + ++L +   + G              +HG   P ERKQ ++R +  + ++
Sbjct  246  CIIFCNSRDNANDLARSLNEAG---------IKVGMIHGGLTPRERKQQMKRIRNLEFQY  296

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY  628
            +I +D+A+RGIDI GV +VIN  +P++   + HR+GR GR    G+AI+L + ++E    
Sbjct  297  VIASDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHN-I  355

Query  629  HVCSSRGKGCYNTRLKEDGG--CTIWYNEMQLLSEIEEHL-NCTISQVEPDIKVPVD  682
             +   RG   +NT   +DG       +N+ Q     ++HL N   ++V   IK  V 
Sbjct  356  SLIEDRG-FVFNTVDIKDGELKEVKAHNQRQARMRKDDHLTNQVKNKVRSKIKNKVK  411


 Score = 92.1 bits (227),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 53/109 (49%), Gaps = 9/109 (8%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F +  +   +  AV+++++  PT+IQ   IP IL   +++  ++TG+GK+ AF +P++Q+
Sbjct  6    FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLLPLMQL  65

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQ  112
            +   +K+ Q             +   +     YD  +  +    G+  +
Sbjct  66   IDSEIKEPQ---------AIVVAPTRELAQQLYDAANHLSQFKAGVSVK  105


>sp|Q2H2J1|DBP4_CHAGB ATP-dependent RNA helicase DBP4 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=DBP4 PE=3 SV=1
Length=825

 Score = 262 bits (670),  Expect = 4e-75, Method: Composition-based stats.
 Identities = 89/458 (19%), Positives = 166/458 (36%), Gaps = 71/458 (16%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K   DL L       ++         ++ A +                 +  +K   G  
Sbjct  53   KQFTDLPLCEATASGLRASHFEVLTDVQRAAIPLAL--------KGRDILGAAKTGSGKT  104

Query  267  VKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
            +        ++   K+   +   ALI+ P+RELA Q    +++  +   N      L+IG
Sbjct  105  LAFLVPVLEKLYHAKWTEYDGLGALIISPTRELAVQIFEVLRKIGR---NHFFSAGLVIG  161

Query  326  GVAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            G + +++   L   ++I+V TPGR L  L  T   +++ ++ LVLDEAD ++  G+   +
Sbjct  162  GKSLKEEAERL-GRMNILVCTPGRMLQHLDQTANFDVNNLQILVLDEADRIMDMGFQSAV  220

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK--GEDSVPDTVH  442
            + +   +P         Q ++ SAT  S  V  L+   +  P +V        + P  + 
Sbjct  221  DALVEHLPTT------RQTLLFSAT-QSKRVSDLARLSLKEPEYVSAHEAAVSATPTNLQ  273

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
               +                                              K +     ++
Sbjct  274  QSYIVTPLAE----------------------------------------KLDTLFGFLR  293

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
             +   + I+F  +      + + F +   G          + LHG +K   R +   RF 
Sbjct  294  TNLKSKIIVFFSSGKQVRFVFESFKRMQPG-------IPLLHLHGRQKQVARMEITSRFS  346

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
                  L  TDV ARG+D   V +V+    P++   Y+HR+GR  R E  G A+  +   
Sbjct  347  SAKYGCLFATDVVARGVDFPAVDWVVQADCPEDADTYIHRVGRTARYESKGRAVLFLEPS  406

Query  623  KEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660
            +E  +      +        ++E+   +I  NE+Q  +
Sbjct  407  EEAGFLKRLEQKKVPLQKVNVRENKKKSI-KNELQSYN  443


 Score = 94.8 bits (234),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 8/121 (7%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F+++ +    A  +    + + TD+Q  +IPL L G D+L AA+TGSGKT AF +PV
Sbjct  52   IKQFTDLPLCEATASGLRASHFEVLTDVQRAAIPLALKGRDILGAAKTGSGKTLAFLVPV  111

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG---SDGLCCQSREVK  117
            ++ +Y   K  +    G   I    S   +  +  ++           S GL    + +K
Sbjct  112  LEKLY-HAKWTEYDGLGALII----SPTRELAVQIFEVLRKIGRNHFFSAGLVIGGKSLK  166

Query  118  E  118
            E
Sbjct  167  E  167


>sp|A3AVH5|RH13_ORYSJ DEAD-box ATP-dependent RNA helicase 13 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os04g0510400 PE=2 
SV=2
Length=832

 Score = 262 bits (670),  Expect = 5e-75, Method: Composition-based stats.
 Identities = 106/481 (22%), Positives = 189/481 (39%), Gaps = 51/481 (11%)

Query  214  LAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSG  273
            L F+ P  ++    FPA   +  ++     E         G   L +  +      + S 
Sbjct  216  LGFKEPTPIQKAC-FPAAAHQGKDV-IGAAETGSGKTLAFGLPILQRLLEEQEKAMRLSR  273

Query  274  NAQVTQTKFLPNAP-KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQ  332
              + TQ +    +P +ALI+ P+RELA+Q  +++K+  K++   +++ + I+GG++   Q
Sbjct  274  EDESTQDENSRESPLRALILTPTRELAKQVCDHLKEAAKFL---RIQVVPIVGGLSMEKQ  330

Query  333  LSVLENGVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHN  389
              +L+   +IVVGTPGRL +L+STG    + L  + F VLDEAD ++ +G+   +  +  
Sbjct  331  ERLLKRKPEIVVGTPGRLWELMSTGNQHLIKLHSLSFFVLDEADRMIERGHFHELQSIIE  390

Query  390  QIPQVTSDG------------------KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL  431
             +P                        K+ Q  V SATL       LS           +
Sbjct  391  MLPVTNGSDEQTVGTTPSCETVPILQIKKRQTFVFSATLA------LSANFRKKLKRGLV  444

Query  432  KGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
              + S    +          +     +  +     + V     +       E + E    
Sbjct  445  TAKASASTDL---------SSIEALSKQARMKPNAEIVDLTKASILPEKLEESFIECSDD  495

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
             K  Y    +  H   + IIFC +     +L       G          + +  H   + 
Sbjct  496  DKDAYLYYILSVHGQGRTIIFCTSIAALRHLSSILRVLG---------INVLTNHAQMQQ  546

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
              R + ++RF++ +   L+ TD  ARG+D   V  VI+  LP     Y+HR GR  R   
Sbjct  547  RARMKAVDRFRESENSILVATDGFARGMDFDDVRTVIHYQLPHSTDVYIHRSGRTARKSM  606

Query  612  MGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTIS  671
             G +I+L++   +  +Y +C S  K        +        N + L  +I++       
Sbjct  607  AGCSIALISPADKAKFYSLCKSLSKENLQQFPVDHAYMPAVMNRLTLARQIDKITRKNSQ  666

Query  672  Q  672
            +
Sbjct  667  E  667


 Score = 96.4 bits (238),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 32/97 (33%), Positives = 49/97 (51%), Gaps = 4/97 (4%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLIL-GGGDVLMAAETGSGKTGAFSIPVI  61
            A+ E+ + P +  AV  + +  PT IQ    P     G DV+ AAETGSGKT AF +P++
Sbjct  199  AWRELRLHPLLITAVRRLGFKEPTPIQKACFPAAAHQGKDVIGAAETGSGKTLAFGLPIL  258

Query  62   QIVY-ETLKDQQEGKKGKTTIKTG--ASVLNKWQMNP  95
            Q +  E  K  +  ++ ++T       S L    + P
Sbjct  259  QRLLEEQEKAMRLSREDESTQDENSRESPLRALILTP  295


>sp|A2XVF7|RH13_ORYSI DEAD-box ATP-dependent RNA helicase 13 OS=Oryza 
sativa subsp. indica OX=39946 GN=OsI_016050 PE=3 SV=2
Length=832

 Score = 262 bits (670),  Expect = 5e-75, Method: Composition-based stats.
 Identities = 106/481 (22%), Positives = 189/481 (39%), Gaps = 51/481 (11%)

Query  214  LAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSG  273
            L F+ P  ++    FPA   +  ++     E         G   L +  +      + S 
Sbjct  216  LGFKEPTPIQKAC-FPAAAHQGKDV-IGAAETGSGKTLAFGLPILQRLLEEQEKAMRLSR  273

Query  274  NAQVTQTKFLPNAP-KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQ  332
              + TQ +    +P +ALI+ P+RELA+Q  +++K+  K++   +++ + I+GG++   Q
Sbjct  274  EDESTQDENSRESPLRALILTPTRELAKQVCDHLKEAAKFL---RIQVVPIVGGLSMEKQ  330

Query  333  LSVLENGVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHN  389
              +L+   +IVVGTPGRL +L+STG    + L  + F VLDEAD ++ +G+   +  +  
Sbjct  331  ERLLKRKPEIVVGTPGRLWELMSTGNQHLIKLHSLSFFVLDEADRMIERGHFHELQSIIE  390

Query  390  QIPQVTSDG------------------KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL  431
             +P                        K+ Q  V SATL       LS           +
Sbjct  391  MLPVTNGSDEQTVGTTPSCETVPILQIKKRQTFVFSATLA------LSANFRKKLKRGLV  444

Query  432  KGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
              + S    +          +     +  +     + V     +       E + E    
Sbjct  445  TAKASASTDL---------SSIEALSKQARMKPNAEIVDLTKASILPEKLEESFIECSDD  495

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
             K  Y    +  H   + IIFC +     +L       G          + +  H   + 
Sbjct  496  DKDAYLYYILSVHGQGRTIIFCTSIAALRHLSSILRVLG---------INVLTNHAQMQQ  546

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
              R + ++RF++ +   L+ TD  ARG+D   V  VI+  LP     Y+HR GR  R   
Sbjct  547  RARMKAVDRFRESENSILVATDGFARGMDFDDVRTVIHYQLPHSTDVYIHRSGRTARKSM  606

Query  612  MGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTIS  671
             G +I+L++   +  +Y +C S  K        +        N + L  +I++       
Sbjct  607  AGCSIALISPADKAKFYSLCKSLSKENLQQFPVDHAYMPAVMNRLTLARQIDKITRKNSQ  666

Query  672  Q  672
            +
Sbjct  667  E  667


 Score = 96.4 bits (238),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 32/97 (33%), Positives = 49/97 (51%), Gaps = 4/97 (4%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLIL-GGGDVLMAAETGSGKTGAFSIPVI  61
            A+ E+ + P +  AV  + +  PT IQ    P     G DV+ AAETGSGKT AF +P++
Sbjct  199  AWRELRLHPLLITAVRRLGFKEPTPIQKACFPAAAHQGKDVIGAAETGSGKTLAFGLPIL  258

Query  62   QIVY-ETLKDQQEGKKGKTTIKTG--ASVLNKWQMNP  95
            Q +  E  K  +  ++ ++T       S L    + P
Sbjct  259  QRLLEEQEKAMRLSREDESTQDENSRESPLRALILTP  295


>sp|Q8JHJ2|DDX55_DANRE ATP-dependent RNA helicase DDX55 OS=Danio 
rerio OX=7955 GN=ddx55 PE=2 SV=2
Length=593

 Score = 256 bits (655),  Expect = 6e-75, Method: Composition-based stats.
 Identities = 86/353 (24%), Positives = 147/353 (42%), Gaps = 57/353 (16%)

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-  337
            + K       ALI+ P+RELA Q    + +F +    P+  ++L+IGG    + +  L+ 
Sbjct  75   EEKLKKMQVGALIITPTRELAMQISEVMGRFLQ--GFPQFTQILLIGGSNPIEDVEKLKT  132

Query  338  NGVDIVVGTPGRLDDLVSTGK--LNL----SQVRFLVLDEADGLLSQGYSDFINRMHNQI  391
             G +I++ TPGRL+D+       L+L      +  LVLDEAD LL  G+   +N +   +
Sbjct  133  QGANIIIATPGRLEDMFRRKADGLDLATAVKSLDVLVLDEADRLLDMGFEASLNTILGYL  192

Query  392  PQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPK  451
            P      K+ +  + SAT  + +++KL    +  P  + +K +     +V          
Sbjct  193  P------KQRRTGLFSAT-QTQELEKLVRAGLRNPVRITVKEKGVAASSVQ---------  236

Query  452  TDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAII  511
                                    +  A     ++      K    V  +++HK ++ ++
Sbjct  237  ------------------------KTPAKLSNYYTMCRAEEKFNTLVAFLRQHKHEKQLV  272

Query  512  FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLIC  571
            F  T    +   +         +      S  C+HG  K H+R +    F+      L+C
Sbjct  273  FFSTCACVEYFGKAL-------EVLVKNVSIHCIHGKMK-HKRNKIFADFRALKSGILVC  324

Query  572  TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            TDV ARGIDI  V +V+    P    ++VHR GR  R    G A+  +   +E
Sbjct  325  TDVMARGIDIPEVNWVLQYDPPSSASSFVHRCGRTARIGNQGNALVFLLPMEE  377


 Score = 93.3 bits (230),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 25/94 (27%), Positives = 43/94 (46%), Gaps = 6/94 (6%)

Query  4   FSEMG--VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
           +  +   +   I Q ++E+ +   T +Q+  IPL +   DV   A TGSGKT AF IP +
Sbjct  9   WGSLPVKLHDNILQTLKELGFTYMTPVQSACIPLFMSNKDVAAEAVTGSGKTLAFVIPAL  68

Query  62  QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNP  95
           +I+ +    ++E  K         +   +  M  
Sbjct  69  EILLK----REEKLKKMQVGALIITPTRELAMQI  98


>sp|Q754U8|PRP5_EREGS Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 
109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=PRP5 PE=3 SV=2
Length=855

 Score = 262 bits (670),  Expect = 7e-75, Method: Composition-based stats.
 Identities = 101/463 (22%), Positives = 178/463 (38%), Gaps = 86/463 (19%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFL---PNAPKALIVEPSRELAEQTL  303
                     + +SK   G  V        Q+   + L      P  LI+ P+RELA Q  
Sbjct  308  PAIMSGRDVIGISKTGSGKTVSFILPLLRQIKAQRPLGGDETGPLGLILSPTRELALQIH  367

Query  304  NNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGK---LN  360
              + +F     +P +R L   GG   + Q++ ++ GV+IV+ TPGR  DL+S      +N
Sbjct  368  EEVTKFTS--GDPSIRSLCCTGGSELKRQINDIKRGVEIVIATPGRFIDLLSLNSGNLIN  425

Query  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
              ++ F+V+DEAD L   G+   +N++   I          Q ++ SAT  +  +K  + 
Sbjct  426  PKRIVFVVMDEADRLFDLGFEPQVNQIMKCI------RPDKQCVLFSATFPN-KLKSFAS  478

Query  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480
            KI+H P ++ +  +  + + +   V   + + D+    +    +   ++           
Sbjct  479  KILHDPVYITVNSKSLINENIEQKVEIFSNEEDKFKSLIHWLALTQQNL-----------  527

Query  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540
                                      ++ I+F  ++  CD L       G         F
Sbjct  528  ------------------------NDEKTIVFVSSQQICDILYNRLEANG---------F  554

Query  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600
            +   +H  +   ER  NL+ FK+     LICT+V +RG+++  V  VI          YV
Sbjct  555  TTFAIHAGKIYTERAWNLKCFKETANGILICTEVLSRGLNVPEVSLVIIYNAAKTFAQYV  614

Query  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660
            H  GR  R    G A++L+   +    Y +  S                           
Sbjct  615  HTTGRTARGSNKGTALTLLMNTELAASYILMKSMRD-----------------------E  651

Query  661  EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKG  703
            E+ +H + T+S     +K   ++F+  +  G+ R   G   KG
Sbjct  652  ELNKHHDATVS----TLKQMSEKFNKGLKTGEYRLVKGFGGKG  690


 Score = 102 bits (254),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 31/116 (27%), Positives = 60/116 (52%), Gaps = 9/116 (8%)

Query  1    MAAFSEMGVMPEIAQAV-EEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
            +  +S++G+   I   +  E+++ +PT IQA++IP I+ G DV+  ++TGSGKT +F +P
Sbjct  274  ILKWSQLGLNSGIMNLLTRELEFTVPTPIQAQAIPAIMSGRDVIGISKTGSGKTVSFILP  333

Query  60   VIQIVYETLKDQQE-GKKGKTTIKTGASVLNKWQMNPYDRGSAFA---IGSDGLCC  111
            +++ +    K Q+  G      +    S   +  +  ++  + F         LCC
Sbjct  334  LLRQI----KAQRPLGGDETGPLGLILSPTRELALQIHEEVTKFTSGDPSIRSLCC  385


>sp|Q9UHL0|DDX25_HUMAN ATP-dependent RNA helicase DDX25 OS=Homo 
sapiens OX=9606 GN=DDX25 PE=1 SV=2
Length=483

 Score = 253 bits (645),  Expect = 9e-75, Method: Composition-based stats.
 Identities = 95/420 (23%), Positives = 163/420 (39%), Gaps = 75/420 (18%)

Query  244  EEEFKFPPKDGFVALSKAPDGYIVKSQHSGN-------AQVTQTKFLPNAPKALIVEPSR  296
                K       + L+  P   I +SQ           A +++   L   P+ L + P+ 
Sbjct  118  NRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQCLCLAPTY  177

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDL-VS  355
            ELA QT   ++Q  K+     ++ +  I G        + +    I++GTPG + D    
Sbjct  178  ELALQTGRVVEQMGKFC--VDVQVMYAIRGNRIPRGTDITK---QIIIGTPGTVLDWCFK  232

Query  356  TGKLNLSQVRFLVLDEADGLLS-QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFD  414
               ++L+++R  VLDEAD ++  QG+SD   R+   +P         Q+++ SAT     
Sbjct  233  LKLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALP------SECQMLLFSATFED-S  285

Query  415  VKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDN  474
            V   +E+I+  P  + L+ E+   + +    V    + D                     
Sbjct  286  VWHFAERIIPDPNVIKLRKEELTLNNIRQYYVLCEHRKD---------------------  324

Query  475  TRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPD  534
                              K +          + QAIIFC+T+ +   L    IQ G    
Sbjct  325  ------------------KYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDG----  362

Query  535  KKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP-  593
                      L G+    +R   ++RF+ G  + LI T+V ARGID+  V  V+N  LP 
Sbjct  363  -----HQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPV  417

Query  594  -----DEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGG  648
                  + + Y+HRIGR GR  + GLA +++  ++      +             ++   
Sbjct  418  KQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSIKQLNAEDMDE  477


 Score = 67.1 bits (162),  Expect = 3e-10, Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 61/166 (37%), Gaps = 4/166 (2%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            +  F E+ +  E+ + +  M +  P+ IQ  ++P++L     +++  +++G+GKT AF +
Sbjct  96   VKTFEELRLKEELLKGIYAMGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVL  155

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKE  118
             ++  V       Q      T      +     QM  +           G          
Sbjct  156  AMLSRVNALELFPQCLCLAPTYELALQTGRVVEQMGKFCVDVQVMYAIRGNRIPRGTDIT  215

Query  119  WHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFG  164
                  T G +     +++   D    RV +   +A + + T  F 
Sbjct  216  KQIIIGTPGTVLD-WCFKLKLIDLTKIRV-FVLDEADVMIDTQGFS  259


>sp|Q761Z9|RH18_ORYSJ DEAD-box ATP-dependent RNA helicase 18 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os01g0164500 PE=1 
SV=2
Length=647

 Score = 257 bits (657),  Expect = 1e-74, Method: Composition-based stats.
 Identities = 97/452 (21%), Positives = 171/452 (38%), Gaps = 52/452 (12%)

Query  214  LAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSG  273
            L+ E+   +K         ++ A +      ++       G         G  +      
Sbjct  30   LSPEVVKALKGGGFRRCTPVQAAAIPLLLSHKDVAVDAATG--------SGKTLAFVVPV  81

Query  274  NAQVTQ--TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARD  331
               + +  +   P+    +I+ P+REL+ Q  N  + F  +     +  +L++GG   + 
Sbjct  82   VEILRRRPSPPKPHEVLGIIISPTRELSSQIYNVAQPF--FATLKGVSSMLLVGGFDIKA  139

Query  332  QLSVLEN-GVDIVVGTPGRLDDLVST-GKLNLSQVRFLVLDEADGLLSQGYSDFINRMHN  389
            +L  LE  G +I+VGTPG+L D++     LN   +  L+LDEAD LL  G+   I  + +
Sbjct  140  ELKKLEEEGANILVGTPGKLFDVMERLDTLNYKNLEILILDEADRLLDLGFQKQITSIIS  199

Query  390  QIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN  449
            ++P      K  +  + SAT  +  VK+L++  +  P  V++K E               
Sbjct  200  KLP------KLRRTGLFSAT-QTEAVKELAKAGLRNPVRVEVKTE------------VKP  240

Query  450  PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA  509
               D   + LG S            T  G     M  EA    K    V  + ++   + 
Sbjct  241  TGKDGAQQELGPS-----------KTPLGLRLEYMICEASN--KSSQLVDFLVQNNGKKI  287

Query  510  IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL  569
            +++  T    D                      +  HG  K   R++ L  F       L
Sbjct  288  MVYFATCACVDYWAIVLPLLDSLKGS-----PIIPYHGKMKQGPREKALASFSALSSGIL  342

Query  570  ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            +CTDVAARG+DI  V  ++    P +   ++HR GR  R ++ G AI  +  +++  +  
Sbjct  343  VCTDVAARGLDIPHVDLIVQYDPPQDPNVFIHRAGRTARYDQEGDAIVFLLPKED-TYVE  401

Query  630  VCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE  661
                RG          +    +       L +
Sbjct  402  FLKRRGVPLTERECSTNAVDIVPQIRSAALED  433


 Score = 94.4 bits (233),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 6/110 (5%)

Query  4    FSEMG--VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            FSE+   + PE+ +A++   +   T +QA +IPL+L   DV + A TGSGKT AF +PV+
Sbjct  23   FSELSPALSPEVVKALKGGGFRRCTPVQAAAIPLLLSHKDVAVDAATGSGKTLAFVVPVV  82

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
                E L+ +    K    +    S   +     Y+    F     G+  
Sbjct  83   ----EILRRRPSPPKPHEVLGIIISPTRELSSQIYNVAQPFFATLKGVSS  128


>sp|Q7XJN0|RH17_ARATH DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis 
thaliana OX=3702 GN=RH17 PE=2 SV=1
Length=609

 Score = 256 bits (654),  Expect = 1e-74, Method: Composition-based stats.
 Identities = 85/484 (18%), Positives = 166/484 (34%), Gaps = 42/484 (9%)

Query  215  AFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDG-YIVKSQHSG  273
            A +    +     F +  L             F+ P      A+     G  ++ +  +G
Sbjct  18   ASKAKSGLFASCSFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTG  77

Query  274  NAQV--------------TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLR  319
              +               +      +   AL++ P+REL  Q    +++         + 
Sbjct  78   TGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLH--RFHWIV  135

Query  320  ELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQ  378
               ++GG     + + L  G+ I++ TPGRL D + +T       +R+++ DEAD +L  
Sbjct  136  PGYVMGGEKKAKEKARLRKGISILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILEL  195

Query  379  GYSDFINRMHNQI----------PQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTW  428
            GY   I ++   +            +   G + Q ++ SATL+   V  L++  +  P  
Sbjct  196  GYGKEIEQIIKLLGSGQNEQGEEDDIVPKGIQKQNLLLSATLND-KVNDLAKLSLDDPVM  254

Query  429  VDLKG-EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSE  487
            + L   +     ++     P +   D +      ++  ++D                 + 
Sbjct  255  IGLDNTKLQQNLSIESPAAPDSDAEDMVIHVNKSANPLSEDYGIPSQLVQRYLRVPCGAR  314

Query  488  AIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF-------  540
             + +L         +     + ++F  T+   D       +    P+ +  +        
Sbjct  315  LVALLS--VLKNLFEREASQKVVVFFSTRDAVDFHYSLLSEFQWPPNSETEEEGTKELFL  372

Query  541  --SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQN  598
                  LHG  +  +R+     FK      L+ TDVAARG+D   V  +I    P E   
Sbjct  373  KCKTFRLHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPGEATE  432

Query  599  YVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
            YVHR+GR  R    G A+  +   +      +    G       L +          M  
Sbjct  433  YVHRVGRTARIGEKGEALLFLQPIEIDYLKEL-KKHGASLTEYPLMKVLDKFPIPGNMPR  491

Query  659  LSEI  662
            + ++
Sbjct  492  IKKV  495


 Score = 96.4 bits (238),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 28/101 (28%), Positives = 50/101 (50%), Gaps = 4/101 (4%)

Query  3    AFSEMGVMPEIAQAVEE-MDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            +FS +G+  +++  ++E M +  PT +QA++IP+IL G DVL+ A TG+GKT A+  P+I
Sbjct  30   SFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLI  89

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
              +           +   T         +  +  Y+     
Sbjct  90   HHLQGHSPKVD---RSHGTFALVIVPTRELCLQVYETLEKL  127


>sp|Q93ZG7|RH38_ARATH DEAD-box ATP-dependent RNA helicase 38 OS=Arabidopsis 
thaliana OX=3702 GN=RH38 PE=1 SV=2
Length=496

 Score = 253 bits (646),  Expect = 1e-74, Method: Composition-based stats.
 Identities = 98/461 (21%), Positives = 179/461 (39%), Gaps = 78/461 (17%)

Query  222  MKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALS---KAPDGYIVKSQHSGNAQ--  276
              + + F    L    +K  + E +F+ P K   ++L      P  +++   H+G+ +  
Sbjct  87   YTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTT  146

Query  277  ------VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
                  +++       P+AL + P+RELA Q +  +++  K+     +   L +      
Sbjct  147  CFVLGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMGKFTG---ITAELAVPDSTRG  203

Query  331  DQLSVLENGV--DIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRM  387
               +     V   +V+GTPG L   ++  +L L+ ++ LV DEAD +L + G+ D   ++
Sbjct  204  APAATRGAPVSAHVVIGTPGTLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKI  263

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
               I +V       QV++ SAT +   VK    + +  P  + +K ED   D+V    V 
Sbjct  264  MKDIGRVNP---NFQVLLFSATFNET-VKDFVARTVKDPNQLFVKREDLALDSVKQYKVV  319

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
               + +++     +     D                                      + 
Sbjct  320  CPKEQNKIEVIKDQIMELGD--------------------------------------IG  341

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
            Q IIF +TK     + +   + G         +    +HG+    +R + ++ FK+   +
Sbjct  342  QTIIFVKTKASAQKVHKALAEMG---------YDVTSVHGNLTESDRDKIVKEFKECLTQ  392

Query  568  FLICTDVAARGIDIHGVPYVINVTLPD-------EKQNYVHRIGRVGRAERMGLAISLVA  620
             LI TDV ARG D   V  V+N  LP        + + Y+HR+GR GR  R G   +L+ 
Sbjct  393  VLIATDVIARGFDQQRVNLVVNYNLPTKYETGEPDYEVYLHRVGRAGRFGRKGAVFNLLL  452

Query  621  TEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE  661
             +    W      + +  +   +KE             L E
Sbjct  453  DDG---WDKEVMEKIEKYFEANVKEIKSWNSEEEYKSALKE  490


 Score = 80.6 bits (197),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 55/146 (38%), Gaps = 17/146 (12%)

Query  2    AAFSEMGVMPEIAQAVE-EMDWLLPTDIQAESIPLILG--GGDVLMAAETGSGKTGAFSI  58
            + F ++ + PE+ + +  EM +  P+ IQA S+P+I+      ++  A  GSGKT  F +
Sbjct  91   SRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVL  150

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKE  118
             ++  V  TL++ Q                 +      +          G+  +      
Sbjct  151  GMLSRVDPTLREPQALC---------ICPTRELANQNMEVLQKMGKF-TGITAELAVPDS  200

Query  119  WHGCR-ATKGLMKGKHYYEVSCHDQG  143
              G   AT+G     H   V     G
Sbjct  201  TRGAPAATRGAPVSAH---VVIGTPG  223


>sp|Q09747|DBP5_SCHPO ATP-dependent RNA helicase dbp5 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp5 
PE=1 SV=1
Length=503

 Score = 253 bits (645),  Expect = 2e-74, Method: Composition-based stats.
 Identities = 94/395 (24%), Positives = 166/395 (42%), Gaps = 76/395 (19%)

Query  244  EEEFKFPPKDGFVALSKAPDGYIVKSQHSGN-------AQVTQTKFLPNAPKALIVEPSR  296
            ++  K   K   + LS  P   I +SQ             +++       P+A+ + PSR
Sbjct  135  QKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSR  194

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVST  356
            ELA Q ++ + +  KY +   ++    I     +      +    IV+GTPG + DL+  
Sbjct  195  ELARQIMDVVTEMGKYTE---VKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKR  247

Query  357  GKLNLSQVRFLVLDEADGLLS-QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDV  415
             +L+   ++  VLDEAD +L  QG  D   R+ + +P      +  Q+++ SAT  S  V
Sbjct  248  RQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLP------RNTQIVLFSATF-SERV  300

Query  416  KKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNT  475
            +K +E+       + LK E+   + +  + +    +  +                     
Sbjct  301  EKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHK---------------------  339

Query  476  RPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDK  535
                           +L   Y +  I      Q+IIFC+ K   + + +     G     
Sbjct  340  -------------YNVLVELYGLLTI-----GQSIIFCKKKDTAEEIARRMTADG-----  376

Query  536  KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP--  593
                 +  CL G+ +  +R   ++ F+ G  + L+ T+V ARGID+  V  V+N  +P  
Sbjct  377  ----HTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLD  432

Query  594  ----DEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
                 + Q Y+HRIGR GR  R+G++I+ V  +K 
Sbjct  433  QAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKS  467


 Score = 70.2 bits (170),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 51/109 (47%), Gaps = 11/109 (10%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            + +F E+ + PE+ + +  M +  P+ IQ +++PL+L     +++  +++G+GKT AF++
Sbjct  113  VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL  172

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
             ++  V  ++   Q             +   +      D  +     ++
Sbjct  173  TMLSRVDASVPKPQ---------AICLAPSRELARQIMDVVTEMGKYTE  212


>sp|A3GG51|MAK5_PICST ATP-dependent RNA helicase MAK5 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=MAK5 PE=3 SV=2
Length=836

 Score = 260 bits (665),  Expect = 2e-74, Method: Composition-based stats.
 Identities = 99/419 (24%), Positives = 165/419 (39%), Gaps = 46/419 (11%)

Query  278  TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE  337
             + K + N P  +I  P+RELA Q ++++    KY        + I GG++ + Q  +L 
Sbjct  294  NRQKKIINHPTGIIFAPTRELAHQVVSHLNSLAKYSPLSTNGIVSITGGLSIQKQERLLS  353

Query  338  NGVDIVVGTPGRLDDLVSTG---KLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV  394
            +G  I+V TPGR+ +L+         L+    +VLDEAD LL  G+ +    + +   + 
Sbjct  354  HGPGIIVATPGRILELLQKDEDLTKRLASTDIIVLDEADRLLQDGHFEEFETILDLFRKN  413

Query  395  TSDGK----RLQVIVCSATLHSFDVKKL---SEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
                K    + Q +V SAT       KL    +          L G D +          
Sbjct  414  RPKNKTFPWKWQTLVFSATFSRDLFGKLDKNQKSHKRNSEGSSLIGNDEI----------  463

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
                 + L ++L     R   V A        N  E   E     +  Y    +  +K  
Sbjct  464  ----LNLLNDKLKFKDTRPALVDANPKEIVSGNITEALVECGPTERDLYLYYFLLMYK-G  518

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK----  563
              ++F  +      L  +                   +H      +R + LERF+K    
Sbjct  519  STLVFANSIDSVKRLVPFLNNL---------NIPAFAIHSSMIQKQRLRALERFQKASEK  569

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
             D   LI +DVAARG+DI  + +V +  LP     Y+HR GR  RA + G+++   + ++
Sbjct  570  NDTAVLIASDVAARGLDIPNIDHVAHYHLPRSADVYIHRSGRTARAGKEGVSVMFCSPQE  629

Query  624  -----EKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDI  677
                  K+   V ++  KG    RL       +   EM L+S+++  +       + DI
Sbjct  630  ASGPLRKLRRLVANNSTKGG---RLNMHNDVKLLPIEMDLVSQLKPRVIIASKLADADI  685


 Score = 99.0 bits (245),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 35/141 (25%), Positives = 55/141 (39%), Gaps = 17/141 (12%)

Query  5    SEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIV  64
            S   + P     +  + +  PT IQ ++IPL   G DV+  A TGSGKT A+ IP+++  
Sbjct  225  SNFSLSPYTLHGLSVLGFDKPTPIQKKTIPLAAEGKDVVGKAITGSGKTLAYGIPILEKY  284

Query  65   YETLKDQQEGKKGKTTIKTGA---SVLNKW------QMNPYDRGSAFAIGS-----DGLC  110
               L    + ++ K          +   +        +N   + S  +         GL 
Sbjct  285  LSNLSIINQNRQKKIINHPTGIIFAPTRELAHQVVSHLNSLAKYSPLSTNGIVSITGGLS  344

Query  111  CQSREVKEWHG---CRATKGL  128
             Q +E    HG     AT G 
Sbjct  345  IQKQERLLSHGPGIIVATPGR  365


>sp|Q6NZQ2|DDX31_MOUSE Probable ATP-dependent RNA helicase DDX31 
OS=Mus musculus OX=10090 GN=Ddx31 PE=2 SV=2
Length=687

 Score = 257 bits (657),  Expect = 2e-74, Method: Composition-based stats.
 Identities = 97/530 (18%), Positives = 209/530 (39%), Gaps = 58/530 (11%)

Query  231  CVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY-------IVKSQHSGNAQVTQTKFL  283
             VLK + +     +           +  S+   G        +V+S  +  +++ ++   
Sbjct  120  TVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCVPVVQSLQALTSKIQRS---  176

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
             + P AL++ P+RELA Q+ + +++  K      +   +++GG   + + + L  G++I+
Sbjct  177  -DGPYALVLVPTRELALQSFDTVQKLLK--PFTWIVPGVLMGGEKRKSEKARLRKGINIL  233

Query  344  VGTPGRLDDLVS-TGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            + TPGRL D +  T  L+ +++R+L++DEAD +L  G+   I  + N    V ++ ++ Q
Sbjct  234  ISTPGRLVDHIKSTKNLHFNRIRWLIVDEADRILDLGFEKDITVILN---AVNAECQKRQ  290

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
             ++ SATL +  V +L +  +H P  + +  ++         V  +   +  + E L + 
Sbjct  291  NVLLSATL-TEGVTRLVDISLHNPVSISVLDKNCNQPNPKE-VASIQLNSFAIPESLDQH  348

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN-  521
             +                     S+   +    + ++  K  K  + I+F  +    +  
Sbjct  349  VVLVP------------------SKLRLVCLAAFILQKCKFEKNQKMIVFFSSCELVEFH  390

Query  522  ----LEQYFIQQGGGP----DKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTD  573
                L       G                + LHG+ +  ER      F   +   L+CTD
Sbjct  391  YSLFLHTLLCHSGTPTSEHLPSASWPLKFLRLHGNMEQEERTSVFHEFSHSETGVLLCTD  450

Query  574  VAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
            VA+RG+D+  V +++  + P     Y+HRIGR  R    G ++ ++A  + +    + S 
Sbjct  451  VASRGLDLPQVTWIVQYSAPSSPAEYIHRIGRTARIGCHGSSLLILAPSEAEYVNSLASH  510

Query  634  R---GKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTY  690
            +   G+      L        +    +   +        I +    ++   +++     +
Sbjct  511  KINVGEIKMEDILAVLAKDDCFKRRQRGAQKSRASGPQEIRERATVLQTVFEDY----VH  566

Query  691  GQKRAAGGGSYKGHVDILAPTVQELAALEKEAQTSFLHLGYLPNQLFRTF  740
              +R             L   ++  A   KE ++ F         + ++F
Sbjct  567  SSQRMVSWAKK-----ALQSFIRAYATYPKELKSIFHVRALHLGHVAKSF  611


 Score = 87.9 bits (216),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 25/101 (25%), Positives = 45/101 (45%), Gaps = 4/101 (4%)

Query  3    AFSEMGVMPEIAQAVEE-MDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            AF E+ + P +   +   +     T +Q +SIP++L G D L+ ++TGSGKT A+ +PV+
Sbjct  104  AFQELDLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCVPVV  163

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            Q +       Q   +             +  +  +D     
Sbjct  164  QSLQALTSKIQ---RSDGPYALVLVPTRELALQSFDTVQKL  201


>sp|Q6BP45|ROK1_DEBHA ATP-dependent RNA helicase ROK1 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=ROK1 PE=3 SV=2
Length=550

 Score = 254 bits (648),  Expect = 2e-74, Method: Composition-based stats.
 Identities = 103/499 (21%), Positives = 192/499 (38%), Gaps = 82/499 (16%)

Query  213  GLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHS  272
             L  ++  ++ +        +++  +  +              +A +    G  +     
Sbjct  120  KLDKKLLSNLIDAGFTEPTPIQDEAIPISL--------EGRDLIACAPTGSGKTLAFLIP  171

Query  273  GNAQVTQTKF--LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
                + Q+         + LI+ P+ ELA Q    +    K     K++  ++   +A +
Sbjct  172  LVQTILQSNPNVKNYGIRGLIISPTNELAVQIFQELNTMTK---GKKMKIGILSKQLANK  228

Query  331  DQLSVL-ENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHN  389
                ++  +  DI+V TP RL D +    ++LS+V  LV+DE D L  QG+ +  + + +
Sbjct  229  INNKIINSSKYDILVSTPLRLIDSIKNETISLSKVEQLVIDETDKLFDQGFVEQTDEILS  288

Query  390  QIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN  449
                      +L+  + SAT+ S  V+++++ IM  P  V +  +++  +T+   +V   
Sbjct  289  NC-----TNTKLRKSMFSATIPSG-VEEMAQSIMKDPIRVIIGHKEAASNTIEQKLVFTG  342

Query  450  PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA  509
             +  +L                                              +       
Sbjct  343  NEEGKLLAIRQMIQ--------------------------------------QGEFKPPI  364

Query  510  IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL  569
            IIF ++      L    +           + +   +H +R P +R + ++RFK GD+  L
Sbjct  365  IIFLQSITRAKALFHELLYD---------RLNVDVIHAERTPKQRDEVIKRFKSGDIWVL  415

Query  570  ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            I TDV ARG+D  GV  VIN  +P   Q YVHRIGR GR  + G A++    E +K    
Sbjct  416  ITTDVIARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRGGKAGKAVTFFTKEDDKAVKP  475

Query  630  VCS-SRGKGCYNTRLKEDGGCTIWYNEMQLLSEIE-------EHLNCTISQVEPDIKVPV  681
            + +  +  GC       + G + W  +M  LS+ E       E     IS V   +K   
Sbjct  476  IINVMKQSGC-------ESGYSGWLEDMHKLSKNEKKDVKKHEIKRKQISTVPKIMKQKR  528

Query  682  DEFDGKVTYGQKRAAGGGS  700
             + +  +   ++R     S
Sbjct  529  KQREEMIDASKRRKQESQS  547


 Score = 104 bits (260),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 31/112 (28%), Positives = 57/112 (51%), Gaps = 6/112 (5%)

Query  1    MAAFSEM----GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
            + +F ++     +  ++   + +  +  PT IQ E+IP+ L G D++  A TGSGKT AF
Sbjct  109  IGSFEDLIGRYKLDKKLLSNLIDAGFTEPTPIQDEAIPISLEGRDLIACAPTGSGKTLAF  168

Query  57   SIPVIQIVYETLKD-QQEGKKGKTTIKTGASVLNKWQ-MNPYDRGSAFAIGS  106
             IP++Q + ++  + +  G +G     T    +  +Q +N   +G    IG 
Sbjct  169  LIPLVQTILQSNPNVKNYGIRGLIISPTNELAVQIFQELNTMTKGKKMKIGI  220


>sp|Q13206|DDX10_HUMAN Probable ATP-dependent RNA helicase DDX10 
OS=Homo sapiens OX=9606 GN=DDX10 PE=1 SV=2
Length=875

 Score = 261 bits (667),  Expect = 2e-74, Method: Composition-based stats.
 Identities = 97/530 (18%), Positives = 198/530 (37%), Gaps = 77/530 (15%)

Query  196  LDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGF  255
            +++++          D  L+ +    ++         ++   +                 
Sbjct  63   INVNEITRF-----SDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLAL--------QGKDV  109

Query  256  VALSKAPDGYIVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYID  314
            +  +K   G  +         + + ++   +    LI+ P+RELA QT   +++  K   
Sbjct  110  LGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGK---  166

Query  315  NPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLD-DLVSTGKLNLSQVRFLVLDEAD  373
            N      LIIGG   + +   + N ++I+V TPGRL   +  T   + + ++ LVLDEAD
Sbjct  167  NHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEAD  225

Query  374  GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFP--TWVDL  431
             +L  G++D +N +   +P      K+ Q ++ SAT  +  VK L+   +  P   WV  
Sbjct  226  RILDMGFADTMNAVIENLP------KKRQTLLFSAT-QTKSVKDLARLSLKNPEYVWVHE  278

Query  432  KGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
            K + S P T+    +    +                                        
Sbjct  279  KAKYSTPATLEQNYIVCELQQ---------------------------------------  299

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
             K       ++ H   ++I+F  +  +   L + F +   G        S + LHG ++ 
Sbjct  300  -KISVLYSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPG-------VSILALHGRQQQ  351

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
              R +    F +     L  TD+AARG+D   V +V+    P++   Y+HR GR  R + 
Sbjct  352  MRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKE  411

Query  612  MGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTIS  671
             G A+ ++   ++ +   +   +       ++  +    +      +L++ ++       
Sbjct  412  DGEALLILLPSEKAMVQQLLQKK-VPVKEIKINPEKLIDVQKKLESILAQDQDLKERAQR  470

Query  672  QVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKE  721
                 ++      D +V    K      +    +  +AP V+ L  ++K+
Sbjct  471  CFVSYVRSVYLMKDKEVFDVSKLPIPEYALSLGL-AVAPRVRFLQKMQKQ  519


 Score = 95.2 bits (235),  Expect = 8e-19, Method: Composition-based stats.
 Identities = 33/120 (28%), Positives = 56/120 (47%), Gaps = 8/120 (7%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  FS+  +  +  + ++E  + L T+IQ ++I L L G DVL AA+TGSGKT AF +PV
Sbjct  68   ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPV  127

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD---GLCCQSREVK  117
            ++ +Y       +G           S   +     ++         D   GL    +++K
Sbjct  128  LEALYRLQWTSTDG-----LGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLK  182


>sp|Q07886|DDX49_DROME Probable ATP-dependent RNA helicase Dbp45A 
OS=Drosophila melanogaster OX=7227 GN=Dbp45A PE=2 SV=2
Length=521

 Score = 253 bits (645),  Expect = 2e-74, Method: Composition-based stats.
 Identities = 110/482 (23%), Positives = 185/482 (38%), Gaps = 76/482 (16%)

Query  242  FGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN------AQVTQTKFLPNAPKALIVEPS  295
             G +      +    A+    D        SG         + +    P +  AL++ P+
Sbjct  25   LGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSEEPVSHFALVLTPT  84

Query  296  RELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVS  355
             ELA Q     +QF        +R  ++ GG     +   L     IVV  PGRL D ++
Sbjct  85   HELAYQIS---EQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHIVVAMPGRLADHLT  141

Query  356  -TGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFD  414
                 +   +++LV+DEAD +L+  + + ++ +   +P      K  Q +  SAT+    
Sbjct  142  GCDTFSFDNLKYLVVDEADRMLNGDFDESLSIIERCLP------KTRQNLFFSATM----  191

Query  415  VKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDN  474
             K   ++   FP   D                          E L + ++   D      
Sbjct  192  -KDFIKESSIFPIASD-------------CFEWSQDSDVATVETLDQRYLLCADYDR---  234

Query  475  TRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPD  534
                            ++  E   +  +E++    +IF  TK  C  L            
Sbjct  235  ---------------DMVLIEALRKYREENENANVMIFTNTKKYCQLLSMTL--------  271

Query  535  KKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD  594
             K  +   VCLHG  +  ER   L RFK   +R LI TDVAARG+DI  V  V+N  LP 
Sbjct  272  -KNMEIDNVCLHGFMRQKERVAALSRFKSNQIRTLIATDVAARGLDIPSVELVMNHMLPR  330

Query  595  EKQNYVHRIGRVGRAERMGLAISLV-ATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWY  653
              + Y+HR+GR  RA R G++IS+       ++   +         NT+L E        
Sbjct  331  TPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLAAIEEEI-----NTKLTEH------P  379

Query  654  NEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGK-VTYGQKRAAGGGSYKGHVDILAPTV  712
             + +++  I   +N T  + E ++++  ++FD +   Y +K     G     ++ L    
Sbjct  380  IDQRMVERIFMQVNVT--RRESEMQLDNNDFDERAQNYRRKTWIMEGKDPDQMEALYRKK  437

Query  713  QE  714
            Q+
Sbjct  438  QK  439


 Score = 92.1 bits (227),  Expect = 4e-18, Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 51/112 (46%), Gaps = 10/112 (9%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F  +G+ P + + + ++     T IQ + IP IL G D + AA+TGSGKT AF++P+++ 
Sbjct  9    FQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILER  68

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDR-GSAFAIGSDGLCCQSR  114
            + E         +  +      +  ++      ++   A       +C  S 
Sbjct  69   LSE---------EPVSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSG  111


>sp|Q5ZJF6|DDX10_CHICK Probable ATP-dependent RNA helicase DDX10 
OS=Gallus gallus OX=9031 GN=DDX10 PE=2 SV=1
Length=875

 Score = 261 bits (667),  Expect = 3e-74, Method: Composition-based stats.
 Identities = 92/466 (20%), Positives = 176/466 (38%), Gaps = 76/466 (16%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            D  L+ +    ++         ++   +                 +  +K   G  +   
Sbjct  77   DFPLSKKTLKGLQEAQYRMVTEIQRQTIGLAL--------QGKDVLGAAKTGSGKTLAFI  128

Query  271  HSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAA  329
                  + + ++   +    LI+ P+RELA QT   +++  K   N      LIIGG   
Sbjct  129  VPALELLYRLQWTSADGLGVLIISPTRELAFQTFKVLRKVGK---NHDFSAGLIIGGKDL  185

Query  330  RDQLSVLENGVDIVVGTPGRLD-DLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
            +++   + + +++++ TPGRL   +  T     S ++ L+LDEAD +L  G++D +N + 
Sbjct  186  KEESERIHH-INMLICTPGRLLQHMDETSYFYASDLQMLILDEADRILDMGFADTMNAII  244

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFP--TWVDLKGEDSVPDTVHHVVV  446
              +P      K+ Q ++ SAT  +  VK L+   +  P   WV  K + S P T+    +
Sbjct  245  ENLP------KKRQTLLFSAT-QTKSVKDLARLSLKDPEYVWVHEKAKFSTPATLDQNYI  297

Query  447  PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM  506
                +                                         K       ++ H  
Sbjct  298  VCELQH----------------------------------------KINVLYSFLRSHLK  317

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
             ++I+F  +  +   L + F +   G          + LHG ++  +R +    F +   
Sbjct  318  KKSIVFFASCKEVQYLFRVFCKLQPG-------LPVLALHGKQQQMKRMEVYTCFVRKKA  370

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
              L  TD+AARG+D   V +VI    P++   Y+HR+GR  R +  G A+ ++   +EK 
Sbjct  371  AVLFATDIAARGLDFPAVNWVIQFDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEEKG  430

Query  627  WYHVCSSRGKGCYNTRLKEDGGCTI------WYNEMQLLSEIEEHL  666
                 + R       ++  +    I      +  + Q L E  +  
Sbjct  431  MVEQLAQRKVPVNEIKINPEKITDIQKRMQAFLAQDQELKEKAQRC  476


 Score = 92.1 bits (227),  Expect = 7e-18, Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 8/121 (7%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  FS+  +  +  + ++E  + + T+IQ ++I L L G DVL AA+TGSGKT AF +P 
Sbjct  72   IQRFSDFPLSKKTLKGLQEAQYRMVTEIQRQTIGLALQGKDVLGAAKTGSGKTLAFIVPA  131

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD---GLCCQSREVK  117
            ++++Y     Q     G   +    S   +     +          D   GL    +++K
Sbjct  132  LELLYRL---QWTSADGLGVL--IISPTRELAFQTFKVLRKVGKNHDFSAGLIIGGKDLK  186

Query  118  E  118
            E
Sbjct  187  E  187


>sp|Q84TG1|RH57_ARATH DEAD-box ATP-dependent RNA helicase 57 OS=Arabidopsis 
thaliana OX=3702 GN=RH57 PE=2 SV=1
Length=541

 Score = 253 bits (647),  Expect = 3e-74, Method: Composition-based stats.
 Identities = 105/456 (23%), Positives = 166/456 (36%), Gaps = 70/456 (15%)

Query  218  IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDG---YIVKSQHSGN  274
            IPP +K+ A   +       +  N  E  FK P      A+     G   +      SG 
Sbjct  132  IPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGK  191

Query  275  A-------QVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
                     +   +   +  +A+I+ P+RELA QT    K+  K          L+   +
Sbjct  192  TFAFICPMLIKLKRPSTDGIRAVILSPARELAAQTAREGKKLIK---GSNFHIRLMTKPL  248

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM  387
                  S L    D+++ TP RL   +   K++LS+V +LVLDE+D L  Q     I+ +
Sbjct  249  VKTADFSKL--WCDVLISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCV  306

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
                   +         + SATL    V++L+  IMH    V +  +++  +TV   +V 
Sbjct  307  VKACSNPSIIRS-----LFSATLPD-SVEELARSIMHDAVRVIIGRKNTASETVKQKLVF  360

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
               +  +L                                           ++  E    
Sbjct  361  AGSEEGKLLA---------------------------------------LRQSFAESLNP  381

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
              +IF ++K     L             K        +H D  P ER+  +++F+ G+  
Sbjct  382  PVLIFVQSKERAKELYDEL---------KCENIRAGVIHSDLPPGERENAVDQFRAGEKW  432

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             LI TDV ARG+D  G+  VIN   PD    Y+HRIGR GRA R G AI+    +     
Sbjct  433  VLIATDVIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQDVPFL  492

Query  628  YHVCSS-RGKGCYNTRLKEDGGCTIWYNEMQLLSEI  662
             ++ ++    GC             W         I
Sbjct  493  RNIANTMMSSGCEVPSWIMSLKKKKWRKHRPRRDSI  528


 Score = 89.4 bits (220),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 12/111 (11%)

Query  1    MAAFSEM----GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
            + +F+E+    G    I + + E+ +  PT IQ ++IP++L G +    A TGSGKT AF
Sbjct  136  LKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAF  195

Query  57   SIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
              P++      +K ++    G   +    S   +        G     GS+
Sbjct  196  ICPML------IKLKRPSTDGIRAV--ILSPARELAAQTAREGKKLIKGSN  238


>sp|Q757I6|MAK5_EREGS ATP-dependent RNA helicase MAK5 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=MAK5 PE=3 SV=1
Length=752

 Score = 258 bits (660),  Expect = 3e-74, Method: Composition-based stats.
 Identities = 102/509 (20%), Positives = 189/509 (37%), Gaps = 61/509 (12%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
            G D   A E+P    N     A VL+            F  P +    ++ KA DG+ + 
Sbjct  169  GLDEAEAPELPS-WTNTMKLSATVLQG------LSRLGFSNPTEIQLQSIPKALDGHDIM  221

Query  269  SQHSGNAQVTQTKFLP-----------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPK  317
             + S  +  T    +P           + P  LI  P+RELA Q  +++++    +    
Sbjct  222  GKASTGSGKTLAYGIPILEGIIRDDTDSRPIGLIFTPTRELAHQVTDHLREVGALLVKRN  281

Query  318  -LRELLIIGGVAARDQLSVLENG--VDIVVGTPGRLDDLVSTGKL---NLSQVRFLVLDE  371
                + + GG++ + Q  +L+      +VV TPGR  +L+   +      ++V  LVLDE
Sbjct  282  PYSIMCLTGGLSIQKQERLLKYKGSARVVVATPGRFLELLEKDQTLIDRFAKVDTLVLDE  341

Query  372  ADGLLSQGYSDFINRMHNQIPQVTS----DGKRLQVIVCSATLHSFDVKKLSEKIMHFPT  427
            AD LL  G+ +   R+   + +            + ++ SAT       KLS        
Sbjct  342  ADRLLQDGHFEEFERILKHLSRARKFTNGKKHGWKTMIYSATFSLDYFNKLSNTSWKK--  399

Query  428  WVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSE  487
                  E+ + + + H++  +  +   L             +      +  +   E   E
Sbjct  400  MKKAPSENEMEEVLKHLMTKIPFRGKPLI------------IDTNPEQKVASQIKESLIE  447

Query  488  AIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHG  547
             +   +  Y    +  +     ++FC        L  Y             + S   +H 
Sbjct  448  CLPTERDLYVYYFVTLYP-GTTLVFCNAIDSVKKLNAYLHNL---------KISAFQIHS  497

Query  548  DRKPHERKQNLERFKK--------GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNY  599
                  R ++LE+F++             LI +DVAARG+DI G+ +VI+  LP     Y
Sbjct  498  SMLQKNRLKSLEKFQEQAKKNQALNKPTVLIASDVAARGLDIPGIQHVIHYHLPRSADVY  557

Query  600  VHRIGRVGRAERMGLAISLVATEKEK-VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
            +HR GR  RAE  G+A+++ + ++       +         +   +      +   E  +
Sbjct  558  IHRSGRTARAENEGVAVTICSPQEAMGPLRKLRRVLAGKAGSKGKRWQNEIALLPVEPDI  617

Query  659  LSEIEEHLNCTISQVEPDIKVPVDEFDGK  687
            +S++ E      +  + +I       D  
Sbjct  618  VSQLRERSRLASALADSEIATSSLSKDDN  646


 Score = 92.5 bits (228),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 26/93 (28%), Positives = 47/93 (51%), Gaps = 2/93 (2%)

Query  1    MAAFSE-MGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
            + +++  M +   + Q +  + +  PT+IQ +SIP  L G D++  A TGSGKT A+ IP
Sbjct  178  LPSWTNTMKLSATVLQGLSRLGFSNPTEIQLQSIPKALDGHDIMGKASTGSGKTLAYGIP  237

Query  60   VIQIVYETLKDQQE-GKKGKTTIKTGASVLNKW  91
            +++ +     D +  G     T +    V +  
Sbjct  238  ILEGIIRDDTDSRPIGLIFTPTRELAHQVTDHL  270


>sp|A6ZLH6|PRP5_YEAS7 Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 
GN=PRP5 PE=3 SV=1
Length=849

 Score = 260 bits (665),  Expect = 3e-74, Method: Composition-based stats.
 Identities = 100/482 (21%), Positives = 187/482 (39%), Gaps = 70/482 (15%)

Query  232  VLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFL---PNAPK  288
             L    L     +           + +SK   G  +        QV   + L      P 
Sbjct  273  KLHFGSLTPIQSQALPAIMSGRDVIGISKTGSGKTISYLLPLLRQVKAQRPLSKHETGPM  332

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
             LI+ P+RELA Q    + +F +   +  +R +   GG   + Q++ L+ G +IVV TPG
Sbjct  333  GLILAPTRELALQIHEEVTKFTE--ADTSIRSVCCTGGSEMKKQITDLKRGTEIVVATPG  390

Query  349  RLDDLV---STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            R  D++       L+  ++ F+V+DEAD L   G+   I ++   +          Q ++
Sbjct  391  RFIDILTLNDGKLLSTKRITFVVMDEADRLFDLGFEPQITQIMKTV------RPDKQCVL  444

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT  +  ++  + +++H P  + +  +  V + V       + + ++    +   H R
Sbjct  445  FSATFPN-KLRSFAVRVLHSPISITINSKGMVNENVKQKFRICHSEDEKFDNLVQLIHER  503

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
            ++      +   G +S                     E    +AIIF  ++  CD + + 
Sbjct  504  SEFFDEVQSENDGQSSDV-------------------EEVDAKAIIFVSSQNICDFISKK  544

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
             +  G              +H  +   ER  NLE+FK+     L+CT+V +RG+++  V 
Sbjct  545  LLNAG---------IVTCAIHAGKPYQERLMNLEKFKREKNSILLCTEVLSRGLNVPEVS  595

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
             VI          YVH  GR  R  R G AI+L+  ++    Y +  +            
Sbjct  596  LVIIYNAVKTFAQYVHTTGRTARGSRSGTAITLLLHDELSGAYILSKA------------  643

Query  646  DGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHV  705
                 +   E++ L  ++            +++    +F+  +  G+ R + G   KG  
Sbjct  644  -----MRDEEIKALDPLQA----------KELQEMSAKFESGMKKGKFRLSKGFGGKGLE  688

Query  706  DI  707
            +I
Sbjct  689  NI  690


 Score = 93.7 bits (231),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 27/124 (22%), Positives = 62/124 (50%), Gaps = 10/124 (8%)

Query  1    MAAFSEMGVMPEIAQAV-EEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
            +  +S++G+  +    + E++ +   T IQ++++P I+ G DV+  ++TGSGKT ++ +P
Sbjct  254  VTKWSQLGLSTDTMVLITEKLHFGSLTPIQSQALPAIMSGRDVIGISKTGSGKTISYLLP  313

Query  60   VIQIVYETLKDQQEGKKGKT-TIKTGASVLNKWQMNPYDRGSAFAIGSDG----LCCQSR  114
            +++ V    K Q+   K +T  +    +   +  +  ++  + F           C    
Sbjct  314  LLRQV----KAQRPLSKHETGPMGLILAPTRELALQIHEEVTKFTEADTSIRSVCCTGGS  369

Query  115  EVKE  118
            E+K+
Sbjct  370  EMKK  373


>sp|P21372|PRP5_YEAST Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Saccharomyces cerevisiae (strain ATCC 204508 
/ S288c) OX=559292 GN=PRP5 PE=1 SV=1
Length=849

 Score = 260 bits (665),  Expect = 3e-74, Method: Composition-based stats.
 Identities = 100/482 (21%), Positives = 187/482 (39%), Gaps = 70/482 (15%)

Query  232  VLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFL---PNAPK  288
             L    L     +           + +SK   G  +        QV   + L      P 
Sbjct  273  KLHFGSLTPIQSQALPAIMSGRDVIGISKTGSGKTISYLLPLLRQVKAQRPLSKHETGPM  332

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
             LI+ P+RELA Q    + +F +   +  +R +   GG   + Q++ L+ G +IVV TPG
Sbjct  333  GLILAPTRELALQIHEEVTKFTE--ADTSIRSVCCTGGSEMKKQITDLKRGTEIVVATPG  390

Query  349  RLDDLV---STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            R  D++       L+  ++ F+V+DEAD L   G+   I ++   +          Q ++
Sbjct  391  RFIDILTLNDGKLLSTKRITFVVMDEADRLFDLGFEPQITQIMKTV------RPDKQCVL  444

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT  +  ++  + +++H P  + +  +  V + V       + + ++    +   H R
Sbjct  445  FSATFPN-KLRSFAVRVLHSPISITINSKGMVNENVKQKFRICHSEDEKFDNLVQLIHER  503

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
            ++      +   G +S                     E    +AIIF  ++  CD + + 
Sbjct  504  SEFFDEVQSENDGQSSDV-------------------EEVDAKAIIFVSSQNICDFISKK  544

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
             +  G              +H  +   ER  NLE+FK+     L+CT+V +RG+++  V 
Sbjct  545  LLNAG---------IVTCAIHAGKPYQERLMNLEKFKREKNSILLCTEVLSRGLNVPEVS  595

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
             VI          YVH  GR  R  R G AI+L+  ++    Y +  +            
Sbjct  596  LVIIYNAVKTFAQYVHTTGRTARGSRSGTAITLLLHDELSGAYILSKA------------  643

Query  646  DGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHV  705
                 +   E++ L  ++            +++    +F+  +  G+ R + G   KG  
Sbjct  644  -----MRDEEIKALDPLQA----------KELQEMSAKFESGMKKGKFRLSKGFGGKGLE  688

Query  706  DI  707
            +I
Sbjct  689  NI  690


 Score = 93.7 bits (231),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 27/124 (22%), Positives = 62/124 (50%), Gaps = 10/124 (8%)

Query  1    MAAFSEMGVMPEIAQAV-EEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
            +  +S++G+  +    + E++ +   T IQ++++P I+ G DV+  ++TGSGKT ++ +P
Sbjct  254  VTKWSQLGLSTDTMVLITEKLHFGSLTPIQSQALPAIMSGRDVIGISKTGSGKTISYLLP  313

Query  60   VIQIVYETLKDQQEGKKGKT-TIKTGASVLNKWQMNPYDRGSAFAIGSDG----LCCQSR  114
            +++ V    K Q+   K +T  +    +   +  +  ++  + F           C    
Sbjct  314  LLRQV----KAQRPLSKHETGPMGLILAPTRELALQIHEEVTKFTEADTSIRSVCCTGGS  369

Query  115  EVKE  118
            E+K+
Sbjct  370  EMKK  373


>sp|Q86B47|Y8611_DROME Probable ATP-dependent RNA helicase CG8611 
OS=Drosophila melanogaster OX=7227 GN=CG8611 PE=1 SV=1
Length=975

 Score = 262 bits (669),  Expect = 4e-74, Method: Composition-based stats.
 Identities = 97/437 (22%), Positives = 175/437 (40%), Gaps = 38/437 (9%)

Query  232  VLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFL---PNAPK  288
            +L   EL     +   +       +  S+   G  +         + + +      +   
Sbjct  345  LLSIRELTSVQQKTIPEVLQGKDVLVRSQTGSGKTLAYALPLVELLQKQQPRIQRKDGVL  404

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            AL++ P+REL  QT   I++  K      +    ++GG + + + + L  G++I++GTPG
Sbjct  405  ALVIVPTRELVMQTYELIQKLVK--PYTWIVPGSLLGGESRKSEKARLRKGINILIGTPG  462

Query  349  RL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK-----RLQ  402
            RL D L+ T    L++++FL+LDEAD LL  GY   + ++   I +  ++ +     +LQ
Sbjct  463  RLVDHLLHTASFKLTKLQFLILDEADRLLELGYERDVKQLVEAIDKQRAECEDKELPQLQ  522

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
             ++ SATL S  V++L+   +  P ++D   +++    +           + L E     
Sbjct  523  RMLLSATLTSQ-VQQLAGLTLKNPLYID-NSDEAASAALKSKDGYQKETIEALLEVDDGL  580

Query  463  HIRTDDVHAKDNTRPGANSPEMW---SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
                +DV    +         +       +  L    A       K  +AI+F  T    
Sbjct  581  GEYQEDVTGVLSIPENLQLSYVVVPPKLRLVALSSLLAKEVDASPKQFKAIVFMSTTEMV  640

Query  520  DNLEQYFIQ--------------------QGGGPDKKGHQFSCVCLHGDRKPHERKQNLE  559
            +       +                     G  P  +G +F    LHG     ER+    
Sbjct  641  NFHHDMLNEALTRRVLDEEDEQEKGDSDDDGDIPLLQGLRF--FKLHGSMTQTERQGVFR  698

Query  560  RFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
             F+      L+ TDV  RGID+  +  V+  T P    ++VHR+GR  RA R G A+  +
Sbjct  699  GFRDCASCVLLATDVVGRGIDVPDIKLVVQYTPPQTTADFVHRVGRTARAGRKGRAVLFL  758

Query  620  ATEKEKVWYHVCSSRGK  636
               + +   H+   R +
Sbjct  759  TPSEAQFVRHLEKKRIR  775


 Score = 83.6 bits (205),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 24/102 (24%), Positives = 51/102 (50%), Gaps = 4/102 (4%)

Query  2    AAFSEMGVMPEIAQAVEEM-DWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  S +G+ P   + +E++      T +Q ++IP +L G DVL+ ++TGSGKT A+++P+
Sbjct  327  SKISTLGLHPHAVKNLEDLLSIRELTSVQQKTIPEVLQGKDVLVRSQTGSGKTLAYALPL  386

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            ++++ +     Q   +    +        +  M  Y+     
Sbjct  387  VELLQKQQPRIQ---RKDGVLALVIVPTRELVMQTYELIQKL  425


>sp|Q9H8H2|DDX31_HUMAN Probable ATP-dependent RNA helicase DDX31 
OS=Homo sapiens OX=9606 GN=DDX31 PE=1 SV=2
Length=851

 Score = 260 bits (664),  Expect = 5e-74, Method: Composition-based stats.
 Identities = 89/421 (21%), Positives = 182/421 (43%), Gaps = 37/421 (9%)

Query  231  CVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY-------IVKSQHSGNAQVTQTKFL  283
             VLK + +     +           +  S+   G        +V+S  +  +++ ++   
Sbjct  247  TVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRS---  303

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
             + P AL++ P+RELA Q+ + +++  K      +   +++GG   + + + L  G++I+
Sbjct  304  -DGPYALVLVPTRELALQSFDTVQKLLK--PFTWIVPGVLMGGEKRKSEKARLRKGINIL  360

Query  344  VGTPGRLDDLVS-TGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            + TPGRL D +  T  ++ S++R+LV DEAD +L  G+   I  + N    V ++ ++ Q
Sbjct  361  ISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILN---AVNAECQKRQ  417

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
             ++ SATL +  V +L++  +H P  + +  +             +NPK D+  + +   
Sbjct  418  NVLLSATL-TEGVTRLADISLHDPVSISVLDKSH---------DQLNPK-DKAVQEVCPP  466

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
                             +   + S+   +    + ++  K  +  + ++F  +    +  
Sbjct  467  PAGDKLDSFAIPESLKQHVTVVPSKLRLVCLAAFILQKCKFEEDQKMVVFFSSCELVEFH  526

Query  523  EQYFIQ---------QGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTD  573
               F+Q           G       +   + LHG  +  ER    + F       L+CTD
Sbjct  527  YSLFLQTLLSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCTD  586

Query  574  VAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
            VAARG+D+  V +++    P     Y+HRIGR  R    G ++ ++A  + +    + S 
Sbjct  587  VAARGLDLPQVTWIVQYNAPSSPAEYIHRIGRTARIGCHGSSLLILAPSEAEYVNSLASH  646

Query  634  R  634
            +
Sbjct  647  K  647


 Score = 90.6 bits (223),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 4/102 (4%)

Query  2    AAFSEMGVMPEIAQAVEE-MDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            AAF E+G+ P +   +   +     T +Q +SIP++L G D L+ ++TGSGKT A+ IPV
Sbjct  230  AAFHELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPV  289

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            +Q +       Q   +             +  +  +D     
Sbjct  290  VQSLQAMESKIQ---RSDGPYALVLVPTRELALQSFDTVQKL  328


>sp|Q9Y7C4|ROK1_CANAL ATP-dependent RNA helicase CHR1 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=CHR1 
PE=3 SV=2
Length=578

 Score = 253 bits (646),  Expect = 7e-74, Method: Composition-based stats.
 Identities = 99/512 (19%), Positives = 198/512 (39%), Gaps = 80/512 (16%)

Query  204  KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPD  263
             F        +  ++  ++ +        ++   +       +         +A +    
Sbjct  128  SFQDMIGRFHINKKVLSNLIDNEFVEPTPIQCESIPITLNNRD--------LIACAPTGS  179

Query  264  GYIVKSQHSGNAQV-TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
            G  +        Q+ ++     +  + LI+ P+ ELA Q    ++   +     ++   +
Sbjct  180  GKTLAFLIPLVQQILSKNVSKNHGIRGLIISPTNELAVQIFQELEIITRGC--KQINVAI  237

Query  323  IIGGVAARDQLSVLEN-GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYS  381
            +   +A++   +++++   DI+V TP RL D+V  G ++LS++  L++DEAD L   G++
Sbjct  238  LSKQLASKLNNNIIKSSKYDIIVSTPLRLIDVVKQGNMDLSKIEQLIIDEADKLFDHGFA  297

Query  382  DFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV  441
            +  + +            +++  + SAT+ S  V++++  IM  P  + +  +++  +T+
Sbjct  298  EQTDEILTHC-----TNPKIRKSIFSATIPS-SVEEMAHSIMKDPLRIIIGHKEAASNTI  351

Query  442  HHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI  501
               +V    +  +L                                              
Sbjct  352  DQKLVFTGNEQGKLLAIRQMIQ--------------------------------------  373

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
            +       IIF ++      L    +           + +   +H +R P +R++ ++RF
Sbjct  374  QGEFKPPIIIFLQSITRAKALFHELLYD---------RLNVDVIHAERTPKQREEVIKRF  424

Query  562  KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT  621
            K GD+  LI TDV ARG+D  GV  VIN  +P   Q YVHRIGR GR  + G A++    
Sbjct  425  KNGDIWVLITTDVLARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRGGKAGKAVTFFTK  484

Query  622  EKEKVWYHVCS-SRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCT-------ISQV  673
            E +K    + +  +  GC       + G + W  +M  LS+ E+    T       IS V
Sbjct  485  EDDKAIKPILNVMKQSGC-------NDGYSQWMEDMGKLSKKEKKQIKTHEIQRKKISTV  537

Query  674  EPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHV  705
               IK    +    +   ++R           
Sbjct  538  PKVIKQKRKQRQDMIAASKRRKQESKQESKQE  569


 Score = 94.4 bits (233),  Expect = 9e-19, Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 4/96 (4%)

Query  1    MAAFSEM----GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
            + +F +M     +  ++   + + +++ PT IQ ESIP+ L   D++  A TGSGKT AF
Sbjct  126  IGSFQDMIGRFHINKKVLSNLIDNEFVEPTPIQCESIPITLNNRDLIACAPTGSGKTLAF  185

Query  57   SIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQ  92
             IP++Q +      +  G +G     T    +  +Q
Sbjct  186  LIPLVQQILSKNVSKNHGIRGLIISPTNELAVQIFQ  221


>sp|A4RGU2|DBP4_PYRO7 ATP-dependent RNA helicase DBP4 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=DBP4 PE=3 SV=1
Length=798

 Score = 258 bits (659),  Expect = 8e-74, Method: Composition-based stats.
 Identities = 93/407 (23%), Positives = 162/407 (40%), Gaps = 66/407 (16%)

Query  252  KDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNA-PKALIVEPSRELAEQTLNNIKQFK  310
                +  +K   G  +        ++ + ++   A   AL++ P+RELA QT   +++  
Sbjct  86   GRDILGAAKTGSGKTLAFLVPLLEKLYREQWTQEAKLGALVLSPTRELAVQTFQVLRKIG  145

Query  311  KYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVL  369
            ++         L+IGG + R++   L   ++I++GTPGR L  L  T   ++  ++ LVL
Sbjct  146  RH---HLFSAGLVIGGKSVREEAEALSR-MNILIGTPGRILQHLDQTHGFDVDNLQLLVL  201

Query  370  DEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWV  429
            DEAD ++  G+   ++ +   +P         Q ++ SAT  S  V  L+   +  P +V
Sbjct  202  DEADRIMDLGFQRDVDALVQHLPTT------RQTLLFSAT-QSKKVSDLARLSLKDPEYV  254

Query  430  DLKGEDS--VPDTVHH--VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW  485
             +  E +   P T+    +V P+  K D LW                             
Sbjct  255  SVHAEATTATPSTLQQHYIVTPLPEKLDTLW-----------------------------  285

Query  486  SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL  545
                           IK +   + ++F  +      + + F Q   G          + +
Sbjct  286  -------------GFIKANLKSKMVVFLSSGKQVRFVYESFRQMQPG-------IPLLHM  325

Query  546  HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR  605
            HG +K   R    +RF       L  TDV ARGID  GV +V+ V  P++  +Y+HR+GR
Sbjct  326  HGRQKQLARLDVTKRFDSSKHACLFATDVIARGIDFTGVDWVVQVDAPEDTDDYIHRVGR  385

Query  606  VGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIW  652
              R ER G A+  +   +E         +         K+    +I 
Sbjct  386  TARYEREGKAVIFLDPSEEAGMLKRLERKKVPITKVTAKDSKKKSIR  432


 Score = 97.9 bits (242),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 34/95 (36%), Positives = 53/95 (56%), Gaps = 5/95 (5%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             AF+E+ +    A+ V +  +   TDIQA +IPL L G D+L AA+TGSGKT AF +P++
Sbjct  49   KAFAELPLSEPTAKGVRDSHFETLTDIQARAIPLALKGRDILGAAKTGSGKTLAFLVPLL  108

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
            + +Y   +  QE K G   +    S   +  +  +
Sbjct  109  EKLYR-EQWTQEAKLGALVL----SPTRELAVQTF  138


>sp|A2QWW0|MAK5_ASPNC ATP-dependent RNA helicase mak5 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=mak5 PE=3 SV=1
Length=766

 Score = 257 bits (657),  Expect = 1e-73, Method: Composition-based stats.
 Identities = 103/457 (23%), Positives = 180/457 (39%), Gaps = 50/457 (11%)

Query  210  KDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGF---VALSKAPDGYI  266
            + LGL+ EI   +         +++ + +       +       G    +A       + 
Sbjct  195  ESLGLSPEILTSLSKMKFTTPTLVQKSCIPQILDGHDVIGKASTGSGKTLAFGIPILEHY  254

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
            ++ +        + K    AP ALI+ P+RELA Q   +I +   +      R  L+ GG
Sbjct  255  LEKRRQDLRAGKEEKKKDTAPIALIMSPTRELAHQLAKHIGELALHAPGSNARIALLTGG  314

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDF  383
            ++ + Q  VL  G DIV+GTPGR+ +++S+G+     +S+++FLV+DEAD LLS+G+   
Sbjct  315  LSVQKQQRVLA-GADIVIGTPGRVWEVLSSGQGLIRKMSEIKFLVIDEADRLLSEGHFKE  373

Query  384  INRMHNQIPQV---------------TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTW  428
               +   + +V                      Q +V SAT H    +KL+ K       
Sbjct  374  AEEILGALDRVEEGNFGGEESEDEEKEDARSERQTLVFSATFHRDLQQKLAGK-----AR  428

Query  429  VDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEA  488
                   S  +++ +           L ++L     +   +     ++      E   E 
Sbjct  429  WTGGDIMSNKESMEY-----------LLQKLKFREEKPKFIDVNPVSQMAEGLKEGIVEC  477

Query  489  IKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGD  548
              + K  Y    +  +   + ++F  +      L Q     G            + LH  
Sbjct  478  GAMEKDLYLYTLLLYNPKHRTLVFTNSISAVRRLTQLLQNLG---------LPALALHSS  528

Query  549  RKPHERKQNLERFKKGDVR---FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR  605
                 R +++ERF          L+ TDVAARG+DI G+ +VI+   P     YVHR GR
Sbjct  529  MAQKARLRSVERFSSPTSDPSSILVATDVAARGLDIKGIDFVIHYHAPRAADTYVHRSGR  588

Query  606  VGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTR  642
              RA   G ++ + A E+      + +       N +
Sbjct  589  TARAGASGKSVIICAPEEMVGVVRLAAKVHANMANGK  625


 Score = 116 bits (291),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 68/162 (42%), Gaps = 11/162 (7%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            +A+  +G+ PEI  ++ +M +  PT +Q   IP IL G DV+  A TGSGKT AF IP++
Sbjct  192  SAWESLGLSPEILTSLSKMKFTTPTLVQKSCIPQILDGHDVIGKASTGSGKTLAFGIPIL  251

Query  62   QIVYETLKD-----QQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREV  116
            +   E  +      ++E KK    I    S   +            A+ + G   +   +
Sbjct  252  EHYLEKRRQDLRAGKEEKKKDTAPIALIMSPTRELAHQLAKHIGELALHAPGSNARIALL  311

Query  117  KEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDL  158
                  +  + ++ G    ++     G     W  + +   L
Sbjct  312  TGGLSVQKQQRVLAGA---DIVIGTPGRV---WEVLSSGQGL  347


>sp|Q8GXD6|RH49_ARATH DEAD-box ATP-dependent RNA helicase 49 OS=Arabidopsis 
thaliana OX=3702 GN=RH49 PE=2 SV=2
Length=558

 Score = 252 bits (643),  Expect = 1e-73, Method: Composition-based stats.
 Identities = 88/378 (23%), Positives = 149/378 (39%), Gaps = 55/378 (15%)

Query  276  QVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
            +       P+    +I+ P+REL+ Q     + F   +  P +  +L++GG      ++ 
Sbjct  80   RSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTL--PNVNSVLLVGGREVEADMNT  137

Query  336  LEN-GVDIVVGTPGRLDDLVSTGK-LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ  393
            LE  G ++++GTPGRL D++   + L+   +  L+LDEAD LL  G+   +N + +++P 
Sbjct  138  LEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLP-  196

Query  394  VTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTD  453
                 K+ +  + SAT  +  V  L++  +     V    E                   
Sbjct  197  -----KQRRTGLFSAT-QTQAVADLAKAGLRNAMEVISGAE-------------------  231

Query  454  RLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFC  513
                             +K  T  G     +  EA +  K    V  + E+K  + ++F 
Sbjct  232  -----------------SKSKTSSGLYCEYLKCEADQ--KSSQLVHLLIENKNKKLVVFF  272

Query  514  RTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTD  573
             T    D       +            S    HG      R   L  F +     L+CTD
Sbjct  273  MTCACVDYWGLVLSKIPTL-----KSISFFSTHGKMDQKGRDTALASFTEASSGVLLCTD  327

Query  574  VAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
            VAARG+DI G+ YV+    P +   ++HR+GR  R ER G AI  +  ++   +      
Sbjct  328  VAARGLDIPGIDYVVQYDPPQDPDVFIHRVGRTARMERQGRAIVFLMPKETD-YVEFMRI  386

Query  634  RGKGCYNTRLKEDGGCTI  651
            R       +  E+    I
Sbjct  387  RRVPLQERKCSENASDVI  404


 Score = 91.3 bits (225),  Expect = 7e-18, Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 5/111 (5%)

Query  1    MAAFSEM--GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSI  58
            +  FSE+   +  +I +A++   + + T +QAE+IP +    DV++ A TGSGKT AF +
Sbjct  13   LPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLL  72

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGL  109
            P I+I+    +      K    +    S   +     +     F      +
Sbjct  73   PFIEII---RRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNV  120


>sp|P0CQ82|DBP4_CRYNJ ATP-dependent RNA helicase DBP4 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=DBP4 PE=3 SV=1
Length=859

 Score = 259 bits (661),  Expect = 1e-73, Method: Composition-based stats.
 Identities = 96/446 (22%), Positives = 172/446 (39%), Gaps = 69/446 (15%)

Query  212  LGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQH  271
            L ++ +    +K+        +++  +                 +  +K   G  +    
Sbjct  65   LPMSSKTQKGLKSSHFLNPTPIQSLAIPPAL--------QARDILGSAKTGSGKTLAFLI  116

Query  272  SGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
                ++   K+ P +   A+++ P+RELA QT   ++   KY +       L+IGG   +
Sbjct  117  PLLERLYLEKWGPMDGLGAVVISPTRELAVQTFMQLRDIGKYHN---FSAGLVIGGKPLK  173

Query  331  DQLSVLENGVDIVVGTPGRLDDLVSTG-KLNLSQVRFLVLDEADGLLSQGYSDFINRMHN  389
            ++   L   ++I++ TPGRL   + +    + S V+ LVLDEAD LL  G+   +  + +
Sbjct  174  EEQERL-GRMNILIATPGRLLQHLDSTVGFDSSAVKVLVLDEADRLLDLGFLPALKAIVS  232

Query  390  QIPQV---TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL---KGEDSVPDTVHH  443
                V          Q ++ SAT  S D+  L++  ++ P ++       E  +P  +  
Sbjct  233  HFSPVQTAPGSRPSRQTLLFSAT-QSKDLAALAKLSLYEPLYISCNKPGEEGVMPANLEQ  291

Query  444  V--VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI  501
               VVP+  K D LW                                            +
Sbjct  292  YYAVVPLERKLDALW------------------------------------------GFV  309

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
            K H   + I+F  +      +   F        +       + LHG +K   R    +RF
Sbjct  310  KSHLKMKGIVFVTSGKQARRVRFIF----ETFRRLHPGLPLMHLHGKQKQPTRLDIFQRF  365

Query  562  KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT  621
                   LICTDVAARG+D   V +VI +  PD+   Y+HR+GR  R +  G A++++  
Sbjct  366  SSSKSALLICTDVAARGLDFPAVDWVIQLDCPDDVDTYIHRVGRTARYQSAGTALTILCP  425

Query  622  EKEKVWYHVCSSRGKGCYNTRLKEDG  647
             +E+        +       ++KE  
Sbjct  426  SEEEGMKTRWGEKAIEVKRIKIKEGK  451


 Score = 96.7 bits (239),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 27/104 (26%), Positives = 49/104 (47%), Gaps = 5/104 (5%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  FSE+ +  +  + ++   +L PT IQ+ +IP  L   D+L +A+TGSGKT AF IP+
Sbjct  59   ITLFSELPMSSKTQKGLKSSHFLNPTPIQSLAIPPALQARDILGSAKTGSGKTLAFLIPL  118

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            ++ +Y       +G           S   +  +  + +      
Sbjct  119  LERLYLEKWGPMDG-----LGAVVISPTRELAVQTFMQLRDIGK  157


>sp|P0CQ83|DBP4_CRYNB ATP-dependent RNA helicase DBP4 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=DBP4 PE=3 SV=1
Length=859

 Score = 259 bits (661),  Expect = 1e-73, Method: Composition-based stats.
 Identities = 96/446 (22%), Positives = 172/446 (39%), Gaps = 69/446 (15%)

Query  212  LGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQH  271
            L ++ +    +K+        +++  +                 +  +K   G  +    
Sbjct  65   LPMSSKTQKGLKSSHFLNPTPIQSLAIPPAL--------QARDILGSAKTGSGKTLAFLI  116

Query  272  SGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
                ++   K+ P +   A+++ P+RELA QT   ++   KY +       L+IGG   +
Sbjct  117  PLLERLYLEKWGPMDGLGAVVISPTRELAVQTFMQLRDIGKYHN---FSAGLVIGGKPLK  173

Query  331  DQLSVLENGVDIVVGTPGRLDDLVSTG-KLNLSQVRFLVLDEADGLLSQGYSDFINRMHN  389
            ++   L   ++I++ TPGRL   + +    + S V+ LVLDEAD LL  G+   +  + +
Sbjct  174  EEQERL-GRMNILIATPGRLLQHLDSTVGFDSSAVKVLVLDEADRLLDLGFLPALKAIVS  232

Query  390  QIPQV---TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL---KGEDSVPDTVHH  443
                V          Q ++ SAT  S D+  L++  ++ P ++       E  +P  +  
Sbjct  233  HFSPVQTAPGSRPSRQTLLFSAT-QSKDLAALAKLSLYEPLYISCNKPGEEGVMPANLEQ  291

Query  444  V--VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI  501
               VVP+  K D LW                                            +
Sbjct  292  YYAVVPLERKLDALW------------------------------------------GFV  309

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
            K H   + I+F  +      +   F        +       + LHG +K   R    +RF
Sbjct  310  KSHLKMKGIVFVTSGKQARRVRFIF----ETFRRLHPGLPLMHLHGKQKQPTRLDIFQRF  365

Query  562  KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT  621
                   LICTDVAARG+D   V +VI +  PD+   Y+HR+GR  R +  G A++++  
Sbjct  366  SSSKSALLICTDVAARGLDFPAVDWVIQLDCPDDVDTYIHRVGRTARYQSAGTALTILCP  425

Query  622  EKEKVWYHVCSSRGKGCYNTRLKEDG  647
             +E+        +       ++KE  
Sbjct  426  SEEEGMKTRWGEKAIEVKRIKIKEGK  451


 Score = 96.7 bits (239),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 27/104 (26%), Positives = 49/104 (47%), Gaps = 5/104 (5%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  FSE+ +  +  + ++   +L PT IQ+ +IP  L   D+L +A+TGSGKT AF IP+
Sbjct  59   ITLFSELPMSSKTQKGLKSSHFLNPTPIQSLAIPPALQARDILGSAKTGSGKTLAFLIPL  118

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            ++ +Y       +G           S   +  +  + +      
Sbjct  119  LERLYLEKWGPMDG-----LGAVVISPTRELAVQTFMQLRDIGK  157


>sp|Q4PDT1|DBP3_USTMA ATP-dependent RNA helicase DBP3 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP3 PE=3 SV=1
Length=585

 Score = 253 bits (645),  Expect = 1e-73, Method: Composition-based stats.
 Identities = 99/404 (25%), Positives = 168/404 (42%), Gaps = 69/404 (17%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKS-  269
            D  +   +   + +Q       ++          ++         V +++   G      
Sbjct  163  DGKVDAAVKKTLDSQGFSTPTPIQACCWPVLLQNKD--------VVGIAETGSGKTFAFG  214

Query  270  QHSGNAQVTQTKFLPNA--------PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLREL  321
              +    VT+ K L +            L++ P+RELA QT  N+ +  K   +  +  +
Sbjct  215  LPALQHLVTKHKVLDSGKKKAKGAQVNVLVIAPTRELAIQTEENMAKLGK---SMGIGMI  271

Query  322  LIIGGVAARDQLSVLEN--GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQG  379
             + GGV+ ++Q+ +L     V IVVGTPGR+ D+   G L+LS V +LVLDEAD +L +G
Sbjct  272  CLYGGVSKQEQVRLLNQSPPVRIVVGTPGRVLDMARDGSLDLSGVTYLVLDEADRMLDKG  331

Query  380  YSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPD  439
            +   I  +        S  +     + SAT     V+ L+E  M+ P  V +  ++    
Sbjct  332  FEPDIRAIIGM---CKSREEGRHTSMFSATWPPA-VRGLAESFMNGPVRVTVGSDE----  383

Query  440  TVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVR  499
                  +  N + ++  E L   + +   +                         ++   
Sbjct  384  ------LSANRRVEQTVEVLADGYAKERRL------------------------NDFLRS  413

Query  500  AIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLE  559
               +   D+ +IF   K +   +EQ   + G         F    +HGD   +ER  +LE
Sbjct  414  VNAQRSKDKILIFALYKKEAQRIEQTLRRGG---------FKVSGIHGDLGQNERIASLE  464

Query  560  RFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI  603
            RFK  +   L+ TDVAARG+DI  V +V+N T P   ++YVHRI
Sbjct  465  RFKSAETPLLVATDVAARGLDIPNVEHVVNYTFPLTIEDYVHRI  508


 Score = 96.0 bits (237),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 6/129 (5%)

Query  1    MAAFSEMG--VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSI  58
            M  F E+   V   + + ++   +  PT IQA   P++L   DV+  AETGSGKT AF +
Sbjct  156  MVDFRELDGKVDAAVKKTLDSQGFSTPTPIQACCWPVLLQNKDVVGIAETGSGKTFAFGL  215

Query  59   PVIQIVYETLKDQQEGK---KGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD-GLCCQSR  114
            P +Q +    K    GK   KG        +   +  +   +  +        G+ C   
Sbjct  216  PALQHLVTKHKVLDSGKKKAKGAQVNVLVIAPTRELAIQTEENMAKLGKSMGIGMICLYG  275

Query  115  EVKEWHGCR  123
             V +    R
Sbjct  276  GVSKQEQVR  284


>sp|Q6BXG0|DBP4_DEBHA ATP-dependent RNA helicase DBP4 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP4 PE=3 SV=2
Length=766

 Score = 257 bits (656),  Expect = 1e-73, Method: Composition-based stats.
 Identities = 87/461 (19%), Positives = 168/461 (36%), Gaps = 74/461 (16%)

Query  198  IDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVA  257
            +D+  +       DL ++ E    +K  +      ++   +  +   E+         + 
Sbjct  40   VDEKSISQFS---DLPISEETARGLKEASFASLTDIQKKTIPISLKGED--------VMG  88

Query  258  LSKAPDGYIVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNP  316
             +K   G  +         + + K    +   ALI+ P+RELA Q    + +  K+ +  
Sbjct  89   TAKTGSGKTLAFLIPTIESLIRNKITEYDGLAALIISPTRELAVQIFEVLVKIGKHNN--  146

Query  317  KLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTG-KLNLSQVRFLVLDEADGL  375
                 L+ GG   + +   +   ++I+VGTPGR+   ++    +  S ++ LVLDEAD  
Sbjct  147  -FSAGLVTGGKDVKYEKERVSK-MNILVGTPGRISQHLNESVGMETSNLQVLVLDEADRC  204

Query  376  LSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED  435
            L  G+   I+ +   +P         Q ++ SAT  S  VK L+   +  P  V +  + 
Sbjct  205  LDMGFKKQIDNILGHLP------PTRQTLLFSAT-QSDSVKDLARLSLANPKRVGISSDQ  257

Query  436  S---VPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKIL  492
                 P+++    + +                                            
Sbjct  258  ELSATPESLEQYYIKIPLDE----------------------------------------  277

Query  493  KGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPH  552
            K +     IK H   + ++F  +        + F     G        S + L+G  K  
Sbjct  278  KLDVLWSFIKSHLKSKILVFFSSSKQVQYAYETFRTLQPG-------ISLLKLYGRHKQT  330

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM  612
             R +   +F +     L  TD+ ARG+D   + +V+ +  P++   YVHR+GR  R  R 
Sbjct  331  SRMETTMKFSQAQHACLFATDIVARGLDFPAIDWVVQIDCPEDAATYVHRVGRAARFGRA  390

Query  613  GLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWY  653
            G ++ ++   +E       ++         +K+    TI  
Sbjct  391  GKSLMMLLPSEENGMLKRLNNNKIELKFMNIKQKNKKTIRP  431


 Score = 95.2 bits (235),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 56/107 (52%), Gaps = 5/107 (5%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++ FS++ +  E A+ ++E  +   TDIQ ++IP+ L G DV+  A+TGSGKT AF IP 
Sbjct  45   ISQFSDLPISEETARGLKEASFASLTDIQKKTIPISLKGEDVMGTAKTGSGKTLAFLIPT  104

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            I+ +   ++++     G   +    S   +  +  ++        ++
Sbjct  105  IESL---IRNKITEYDGLAAL--IISPTRELAVQIFEVLVKIGKHNN  146


>sp|Q0CZS8|HAS1_ASPTN ATP-dependent RNA helicase has1 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=has1 
PE=3 SV=1
Length=576

 Score = 252 bits (644),  Expect = 1e-73, Method: Composition-based stats.
 Identities = 84/390 (22%), Positives = 139/390 (36%), Gaps = 65/390 (17%)

Query  252  KDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFK  310
                +  +K   G  +         ++  +F P N    +I+ P+RELA Q     K+  
Sbjct  135  GRDILGAAKTGSGKTLAFLIPAVEMLSALRFKPRNGTGVIIITPTRELALQIFGVAKELC  194

Query  311  KYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVL  369
            ++         ++IGG   R +   L  GV++++ TPGRL D + +T        + LVL
Sbjct  195  EFHSQTY---GIVIGGANRRAEAEKLNKGVNLLIATPGRLLDHLQNTQGFVYKNCKVLVL  251

Query  370  DEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH-FPTW  428
            DEAD  L  G+   + ++   +P      +  Q ++ SAT  +  V+ L+   +   P +
Sbjct  252  DEADRCLDVGFEAELRQIVKILP-----SEERQTLLFSAT-QTTKVEDLARISLKPGPLY  305

Query  429  VDLK--GEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWS  486
            +++    E +  D V    +        L             +                 
Sbjct  306  INVDHRKEHATVDGVDQGYIICEADKRFLLLFTFLKKNLKKKIII---------------  350

Query  487  EAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLH  546
                                     F  +                           + LH
Sbjct  351  -------------------------FFSSCNAVKYYADLL---------NYIDLPVLALH  376

Query  547  GDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRV  606
            G  K   R Q    F       LICTDVAARG+DI  V Y+I    PDE + Y+HR+GR 
Sbjct  377  GKLKQQTRTQRFFEFCNATQGTLICTDVAARGLDIPAVDYIIQFDPPDEPKAYIHRVGRT  436

Query  607  GRA--ERMGLAISLVATEKEKVWYHVCSSR  634
             R    ++G +I L+   +      +  +R
Sbjct  437  ARGTKGKIGRSIMLLQPSEVGFLNVLREAR  466


 Score = 105 bits (263),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 5/93 (5%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F E+ +     +A+ +M +   T+IQ  +IP  L G D+L AA+TGSGKT AF IP +++
Sbjct  100  FDELNLSEPTMKAIRQMGFETMTEIQQRTIPPTLAGRDILGAAKTGSGKTLAFLIPAVEM  159

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
            +       + G     T     +   +  +  +
Sbjct  160  LSALRFKPRNG-----TGVIIITPTRELALQIF  187


>sp|Q5AF95|DBP4_CANAL ATP-dependent RNA helicase DBP4 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP4 
PE=3 SV=1
Length=765

 Score = 256 bits (655),  Expect = 2e-73, Method: Composition-based stats.
 Identities = 88/463 (19%), Positives = 160/463 (35%), Gaps = 72/463 (16%)

Query  196  LDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGF  255
             D        S+   DL +       +K         ++   +      E+         
Sbjct  38   YDPKTDEASVSQ-FSDLPITENTLKGLKEATFVSLTDIQKKTIPIALKGED--------L  88

Query  256  VALSKAPDGYIVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYID  314
            +  ++   G  +         + + K    +   ALIV P+RELA Q    + +  KY  
Sbjct  89   MGTARTGSGKTLAFLIPVIESLIRNKITEYDGLAALIVSPTRELAVQIFEVLTKIGKYN-  147

Query  315  NPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTG-KLNLSQVRFLVLDEAD  373
                   L+ GG   + +   +   ++I+VGTPGR+   ++    +  S ++ LVLDEAD
Sbjct  148  --TFSAGLVTGGKDVQFEKERVSR-MNILVGTPGRISQHLNEAVGMETSNLQVLVLDEAD  204

Query  374  GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG  433
              L  G+   I+ +   +P         Q ++ SAT  S  V  L+   +  P  + +  
Sbjct  205  RCLDMGFKKQIDNILGHLPTT------RQTLLFSAT-QSESVNDLARLSLTNPNKIGVSS  257

Query  434  EDS---VPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIK  490
            +      P+++    V V                                          
Sbjct  258  DQEVSATPESLEQYYVKVPLDE--------------------------------------  279

Query  491  ILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRK  550
              K +     IK H   + ++F  +        + F     G        S + L+G  K
Sbjct  280  --KLDVLWSFIKSHLKSKILVFFSSSKQVQYTYETFRTLQPG-------ISLMKLYGRHK  330

Query  551  PHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAE  610
               R +   +F +     L  TD+ ARG+D   + +V+ V  P++   YVHR+GR  R  
Sbjct  331  QTSRLETTMKFSQAQHACLFATDIVARGLDFPAIDWVVQVDCPEDAATYVHRVGRSARFG  390

Query  611  RMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWY  653
            R G ++ ++   +E+                 +K+    +I  
Sbjct  391  RKGKSLLMLLPSEEEGMLKRLKIHKIEPKLMNIKQKSKKSIRP  433


 Score = 94.8 bits (234),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 55/107 (51%), Gaps = 5/107 (5%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++ FS++ +     + ++E  ++  TDIQ ++IP+ L G D++  A TGSGKT AF IPV
Sbjct  47   VSQFSDLPITENTLKGLKEATFVSLTDIQKKTIPIALKGEDLMGTARTGSGKTLAFLIPV  106

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            I+ +   ++++     G   +    S   +  +  ++  +     + 
Sbjct  107  IESL---IRNKITEYDGLAAL--IVSPTRELAVQIFEVLTKIGKYNT  148


>sp|A7EAY2|MAK5_SCLS1 ATP-dependent RNA helicase mak5 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=mak5 PE=3 SV=1
Length=780

 Score = 257 bits (656),  Expect = 2e-73, Method: Composition-based stats.
 Identities = 109/485 (22%), Positives = 174/485 (36%), Gaps = 72/485 (15%)

Query  240  FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP---------------  284
                +  F  P      A+ +   G+ V  + S  +  T    +P               
Sbjct  226  MALSKMGFSKPTPIQSEAIPEVLAGHDVVGKASTGSGKTLAFGIPIVEKWLEVYGELDED  285

Query  285  ------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
                    P ALI+ P+RELA Q   +I    K +         + GG++ + Q   L  
Sbjct  286  ELKKSTRPPTALILSPTRELAHQLTEHITTLCKGMPTSPY-VAAVTGGLSVQKQQRQLSK  344

Query  339  GVDIVVGTPGRLDDLVSTG---KLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
              DI++GTPGRL +++S+       L QVRFLV+DEAD LL+ G+      + N + +  
Sbjct  345  -ADIIIGTPGRLWEVISSSNELSAGLKQVRFLVIDEADRLLTDGHFKEAEEILNALDRTH  403

Query  396  SDG--------KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
             +            Q +V SAT H    +KL+ K                          
Sbjct  404  GNEDDDEEDTLPPRQTLVFSATFHKGLQQKLAGKG-------------------KQSFKD  444

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
             +   + L ++L     +   V     ++  AN  E   E     K  Y    +  H   
Sbjct  445  DSQSMEYLLKKLNFREEKPKFVDVNPISQMAANLKEGMVECGGEEKDLYLYSLLLHHPNQ  504

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF--KKGD  565
            + +IF  +      L                      LH       R +++E+F      
Sbjct  505  RTLIFTNSIHSVRRLTPMLQTL---------NIPAHSLHSQMIQKARMRSIEKFSRTNNT  555

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
               L+ TDVAARG+DI GV  VI+  LP     YVHR GR  RA   G +I L   E+  
Sbjct  556  GSVLVATDVAARGLDIGGVQLVIHYHLPRTADMYVHRSGRTARAAASGSSILLCGPEEVV  615

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWY-----NEMQLLSEIEEHLNCTISQVEPDIKVP  680
                + +   K      L  +G  + +Y      + +++S ++  +       +  +   
Sbjct  616  GTRRLVA---KVHAQNALHGEGKKSKFYIRSLDIDRRVVSRLKPRVTLAKKIADSALAKE  672

Query  681  VDEFD  685
                D
Sbjct  673  KKGHD  677


 Score = 113 bits (282),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 59/278 (21%), Positives = 105/278 (38%), Gaps = 33/278 (12%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++ + E+ +      A+ +M +  PT IQ+E+IP +L G DV+  A TGSGKT AF IP+
Sbjct  212  VSGWVELDLSSNTLMALSKMGFSKPTPIQSEAIPEVLAGHDVVGKASTGSGKTLAFGIPI  271

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLN---KWQMNPYDRGSAF----------AIGSD  107
            ++   E   +  E +  K+T    A +L+   +      +  +            A  + 
Sbjct  272  VEKWLEVYGELDEDELKKSTRPPTALILSPTRELAHQLTEHITTLCKGMPTSPYVAAVTG  331

Query  108  GLCCQS--REVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGF  165
            GL  Q   R++ +      T G       +EV          G    Q    +  +    
Sbjct  332  GLSVQKQQRQLSKADIIIGTPGR-----LWEV-ISSSNELSAG--LKQVRFLVIDEADRL  383

Query  166  GFGGTGKKSHN----KQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPH  221
               G  K++          +  E+    DT+       +  + FS      GL  ++   
Sbjct  384  LTDGHFKEAEEILNALDRTHGNEDDDEEDTL-----PPRQTLVFSATFHK-GLQQKLAGK  437

Query  222  MKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALS  259
             K      +  ++    K NF EE+ KF   +    ++
Sbjct  438  GKQSFKDDSQSMEYLLKKLNFREEKPKFVDVNPISQMA  475


>sp|Q0DBU5|RH31_ORYSJ DEAD-box ATP-dependent RNA helicase 31 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os06g0526600 PE=3 
SV=2
Length=547

 Score = 251 bits (641),  Expect = 2e-73, Method: Composition-based stats.
 Identities = 93/469 (20%), Positives = 176/469 (38%), Gaps = 76/469 (16%)

Query  214  LAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSG  273
            L+      +K         ++ A L                 +A +K   G  V      
Sbjct  86   LSPLTLKGVKAAGYERMTAVQEATLPIIL--------KGKDVLAKAKTGTGKTVAFLLPA  137

Query  274  NAQVTQTKFLP-----NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
               V++   +           ++V P+RELA+Q      +  K+  +P +   L+IGG  
Sbjct  138  IEVVSKLPPIDCDKKRPPISVVVVCPTRELADQAAAEANKLLKF--HPSIGVQLVIGGTR  195

Query  329  AR-DQLSVLENGVDIVVGTPGRLDDLVSTG---KLNLSQVRFLVLDEADGLLSQGYSDFI  384
               +Q  +  N   I+V TPGRL D +         L  V+ L+LDEAD LL  G+   I
Sbjct  196  MALEQKRMHTNPCQILVATPGRLKDHMENTPGFATRLMGVKVLILDEADRLLDMGFRTDI  255

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
             R+   +P      K+ Q ++ SAT+   +V+++          + +K +    +TV   
Sbjct  256  ERIVAALP------KQRQTLLFSATVPD-EVRQVC--------HIAMKRDLEFVNTVEEG  300

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
                + +  ++                       A   + +S    +L        I E+
Sbjct  301  SEETHSQVKQM--------------------HVVAPLDKQFSILYGLLTDH-----ISEN  335

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
               + I+FC T      + +   +          + +   +H  +    R +  + FK+ 
Sbjct  336  VDYKVIVFCTTAKVTSLVAELLSEL---------KLNVREIHSRKPQSYRTRISKEFKES  386

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
                L+ +DV+ARG+D   V  V+ + +P +++ Y+HR+GR GR    G  I L+A  +E
Sbjct  387  KGLILVSSDVSARGVDYPNVTLVVQMGVPTDREQYIHRLGRTGRRGNEGSGILLLAPWEE  446

Query  625  KVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQV  673
                 +         +  + E     I  +  + + +   H+     ++
Sbjct  447  YFLRSI--------KDLPITEATLPLIDLDTKRKVEKALAHVEVKDKEL  487


 Score = 100 bits (249),  Expect = 8e-21, Method: Composition-based stats.
 Identities = 25/101 (25%), Positives = 45/101 (45%), Gaps = 1/101 (1%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F E  + P   + V+   +   T +Q  ++P+IL G DVL  A+TG+GKT AF +P I
Sbjct  79   TRFDECSLSPLTLKGVKAAGYERMTAVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPAI  138

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            ++V +      + K+   ++        +         +  
Sbjct  139  EVVSKLPPIDCDKKRPPISV-VVVCPTRELADQAAAEANKL  178


>sp|Q41382|RH7_SPIOL DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia 
oleracea OX=3562 GN=RH7 PE=2 SV=1
Length=685

 Score = 255 bits (650),  Expect = 2e-73, Method: Composition-based stats.
 Identities = 104/417 (25%), Positives = 174/417 (42%), Gaps = 66/417 (16%)

Query  266  IVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
            IV+S  +G  +  +       P  L++ P+RELA Q    +  F+ Y     L    + G
Sbjct  165  IVESLVNGRTKDLRRSGHGRLPSVLVLLPTRELATQV---LADFQVYGGAVGLTACSVYG  221

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            G     Q+S L  GVDIVVGTPGR+ DL+  G L L  + F VLDEAD +L  G+ D + 
Sbjct  222  GAPFHSQISSLTRGVDIVVGTPGRVKDLLEKGVLKLGSLLFRVLDEADEMLKMGFVDDVE  281

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTW-VDLKGEDSVPDTV--H  442
             +  ++  V+    ++Q ++ SATL S+ VK++S + +      VDL  +  +  ++   
Sbjct  282  LILGKVDHVS----KVQTLLFSATLPSW-VKQISTRFLKSAKKTVDLVSDQKMKASISVR  336

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
            H+V+P                               +  P++  + I+            
Sbjct  337  HIVIPC----------------------------SASARPDLIPDIIRCYGS--------  360

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
                 ++IIF  TK     L                      LHGD +  +R+  L+ F+
Sbjct  361  ---GGRSIIFTETKESASQLAGLLT-------------GARPLHGDIQQTQREVTLKGFR  404

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             G    L+ T+VAARG+DI+ V  +I    P + ++Y+HR GR GRA   G+A+ L   +
Sbjct  405  TGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEDYIHRSGRTGRAGNTGVAVMLYDPK  464

Query  623  KEKVWYHVCSSRGKGCYNTRLKEDGGCTIWY--NEMQLLSEIEEHLNCTISQVEPDI  677
            +  V   +    G    +    +               + +I + +         ++
Sbjct  465  RSSV-TKIERESGVKFEHLSAPQPVDVAKAVGIEAAAAILQISDSVIPAFKDAAEEL  520


 Score = 66.7 bits (161),  Expect = 5e-10, Method: Composition-based stats.
 Identities = 22/130 (17%), Positives = 44/130 (34%), Gaps = 3/130 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            + S   +   +   +          IQA +   ++ G D++  A TG GKT AF +P+++
Sbjct  108  SLSNFRISKPLKDVLISKGIKALFPIQAMTFDNVIDGCDLVGRARTGQGKTLAFVLPIVE  167

Query  63   IVYETL-KDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHG  121
             +     KD +    G+           +           +        C       +H 
Sbjct  168  SLVNGRTKDLRRSGHGRLPSVLVLLPTRELATQVLADFQVYGGAVGLTACSVYGGAPFHS  227

Query  122  CRA--TKGLM  129
              +  T+G+ 
Sbjct  228  QISSLTRGVD  237


>sp|A1CB55|DBP7_ASPCL ATP-dependent RNA helicase dbp7 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp7 PE=3 SV=1
Length=755

 Score = 256 bits (654),  Expect = 2e-73, Method: Composition-based stats.
 Identities = 99/517 (19%), Positives = 179/517 (35%), Gaps = 97/517 (19%)

Query  205  FSKN------------GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPK  252
            F+KN            G          P +     F    L  +       + E K P  
Sbjct  103  FTKNPEPKNVEEVKEEGPVEEAKPTNAPLIDGLDTFTNLGLSPSLAAHLLTKLELKAPTA  162

Query  253  DGFVALSKA----PDGYIVKSQHSGNAQVTQTKFLPN---------------------AP  287
                ++S+      D +I     SG         +                         
Sbjct  163  IQKASISQLLKEDGDAFIQAETGSGKTLAYLLPLVQRIMTLSKPTTDATGQPIVHRDSGL  222

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
             A+++ P+REL +Q    ++   +      +    +IGG   + + + L  G++I+V TP
Sbjct  223  FAIVLAPTRELCKQISVVLESLLRC--AHWIVAGTVIGGEKKKSEKARLRKGLNILVATP  280

Query  348  GRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK------R  400
            GRL D + +T  L++S VR+LVLDE D L+  G+ + I  +  ++       +      +
Sbjct  281  GRLADHLENTKVLDVSNVRWLVLDEGDRLMELGFEEEIQGIVKKLDARQRPSRIPGIPTK  340

Query  401  LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLG  460
               ++CSAT+   +V+KL E  +     +    ED                     E+  
Sbjct  341  RTTVLCSATM-KMNVQKLGEISLKDAVHIKADPEDE-------------------DEKAR  380

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
             ++   D  +        + +       +  L        +++  + + I+F       D
Sbjct  381  LANKEEDSAYRVPAQLKQSYAVVAAKLRLVTLTAYLKRTFMRKGSVMKTIVFVSCADSVD  440

Query  521  NLEQYFIQQGGGPD----------------------------KKGHQFSCVCLHGDRKPH  552
               + F ++    D                               +  +   LHG    +
Sbjct  441  FHFEVFTRKKQQTDDADASDEEKTEEKPLSPHGTIAPATAFSNPSNPVTLYRLHGSLPQN  500

Query  553  ERKQNLERF-KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
             R   L  F K  +   LICTDVA+RG+D+  V  V+        ++++HRIGR  R  R
Sbjct  501  VRTSTLASFAKNREPSVLICTDVASRGLDLPNVDLVVEYDPAFSAEDHLHRIGRTARVGR  560

Query  612  MGLAISLVATEKEKVWYHVCSS--RGKGCYNTRLKED  646
             G A+  +    E+ +  +     R  G   TR+  +
Sbjct  561  DGRALVFLMPGCEENYVEILKRGYRDGGKALTRVDAN  597


 Score = 72.1 bits (175),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query  3    AFSEMGVMPEIA-QAVEEMDWLLPTDIQAESIPLILGG-GDVLMAAETGSGKTGAFSIPV  60
             F+ +G+ P +A   + +++   PT IQ  SI  +L   GD  + AETGSGKT A+ +P+
Sbjct  137  TFTNLGLSPSLAAHLLTKLELKAPTAIQKASISQLLKEDGDAFIQAETGSGKTLAYLLPL  196

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNK  90
            +Q +    K         TT  TG  ++++
Sbjct  197  VQRIMTLSK--------PTTDATGQPIVHR  218


>sp|Q6C835|DBP7_YARLI ATP-dependent RNA helicase DBP7 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP7 PE=3 
SV=1
Length=799

 Score = 257 bits (656),  Expect = 3e-73, Method: Composition-based stats.
 Identities = 98/463 (21%), Positives = 163/463 (35%), Gaps = 67/463 (14%)

Query  222  MKNQALFPACVLKNAELKFNFG---EEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVT  278
            +K+   F         +    G    +  K         + +  D ++     SG     
Sbjct  229  LKDSTTFSGLGCSQRLVDALVGMQLAKPTKIQRATIPRLIQRERDLFVQAQTGSGKTLAF  288

Query  279  QTKFLPN-----------APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
                L                A+I+ P+REL  Q  + ++   +    P +   ++IGG 
Sbjct  289  VLPVLERIMSCDDVSRETGLFAVILTPTRELTTQIYSVLETLCRK-ACPWIVPGIVIGGE  347

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
              + + + +  GV+I+V TPGRL D   +T  L+LSQVR++VLDE D L+  G+ + I +
Sbjct  348  KKKSEKARIRKGVNILVATPGRLADHFDNTEALDLSQVRWVVLDEGDRLMELGFEETITK  407

Query  387  MHNQI----------------PQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVD  430
            +   I                  +     R   ++CSAT+    V +L +  +    WV 
Sbjct  408  ILRTIEWKSVLRGENYLKDIPKNLKPLPSRRVTVLCSATM-KGGVTELGKSTLKDADWV-  465

Query  431  LKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIK  490
                DSV D +    V       +L +       +   V      R              
Sbjct  466  --SNDSVEDALAETSVETFSAPSQLVQEWVVVPAKLRLVTLLGALRGDILQS--------  515

Query  491  ILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDK-----------KGHQ  539
                        E    + I+F       D       + G   +K               
Sbjct  516  -----------SEKTNTKVIVFLSCSDSVDFHFDVLSRDGSQINKMDTAKTAPLLLDDVS  564

Query  540  FSCVCLHGDRKPHERKQNLERF-KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQN  598
             S   LHG      R   L  F K      L+CTDVA+RG+D+  + +VI    P   ++
Sbjct  565  TSVYKLHGSLSQQARTATLASFAKNSTPSILLCTDVASRGLDLPKITHVIEYDPPFSIED  624

Query  599  YVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
            ++HR+GR  RA + G A+  +    E+ +        +    T
Sbjct  625  HLHRVGRTARAGQDGRALLFLLPGAEEGYVEKLKQSQQMKKTT  667


 Score = 83.6 bits (205),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 65/178 (37%), Gaps = 24/178 (13%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG-GDVLMAAETGSGKTGAFSIPV  60
              FS +G    +  A+  M    PT IQ  +IP ++    D+ + A+TGSGKT AF +PV
Sbjct  233  TTFSGLGCSQRLVDALVGMQLAKPTKIQRATIPRLIQRERDLFVQAQTGSGKTLAFVLPV  292

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA------IGSDGLCCQSR  114
            ++ +       +E            +   +     Y             I    +    +
Sbjct  293  LERIMSCDDVSRE----TGLFAVILTPTRELTTQIYSVLETLCRKACPWIVPGIVIGGEK  348

Query  115  EVKEWHGCR-------ATKGLMKGKHYYEVSCHDQGLCRVGWSTMQAS---LDLGTDK  162
            +  E    R       AT G +   H+      D  L +V W  +      ++LG ++
Sbjct  349  KKSEKARIRKGVNILVATPGRLAD-HFDNTEALD--LSQVRWVVLDEGDRLMELGFEE  403


>sp|A5E3K3|DBP4_LODEL ATP-dependent RNA helicase DBP4 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP4 PE=3 SV=1
Length=775

 Score = 256 bits (655),  Expect = 3e-73, Method: Composition-based stats.
 Identities = 88/452 (19%), Positives = 162/452 (36%), Gaps = 71/452 (16%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K+  DL +       +K  +      ++   +      E+         +  ++   G  
Sbjct  48   KHFSDLPITQNTLRGLKECSFVSLTDIQKKSIPVALKGED--------LMGTARTGSGKT  99

Query  267  VKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
            +         + +      +   ALIV P+RELA Q    + +  KY         L+ G
Sbjct  100  LAFLIPVIEILLRNDITEYDGLAALIVSPTRELAVQIFEVLAKIGKYNS---FSAGLVTG  156

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTG-KLNLSQVRFLVLDEADGLLSQGYSDFI  384
            G   + +   +   ++I+VGTPGR+   ++    +  S ++ LVLDEAD  L  G+   I
Sbjct  157  GKDVQYEKERISR-MNILVGTPGRISQHLNESVGMETSNLQVLVLDEADRCLDMGFRKQI  215

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED---SVPDTV  441
            + + N +P      +  Q ++ SAT H+  V+ L+   +  P  +    +    ++P+++
Sbjct  216  DNILNHLP------RTRQTLLFSAT-HTDSVQDLARLSLTNPKRIGTSSDQDISAIPESL  268

Query  442  HHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI  501
                V V                                            K +     I
Sbjct  269  DQYYVKVPLNE----------------------------------------KLDVLWSFI  288

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
            K H   + ++F  +        + F     G          + L+G  K   R +   +F
Sbjct  289  KSHLKSKILVFFSSSKQVQYAYETFRTLQPG-------IPLMKLYGRHKQTSRLETTVKF  341

Query  562  KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT  621
             +     L  TD+ ARG+D   + +VI V  P++   YVHR+GR  R  R G ++ ++  
Sbjct  342  SQAQHACLFATDIVARGLDFPAIDWVIQVDCPEDVATYVHRVGRSARFGRQGKSLLMLLP  401

Query  622  EKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWY  653
             +E                  +KE    +I  
Sbjct  402  TEEDGMLKRMKVHKIEPKMMNIKEKSKKSIRP  433


 Score = 91.7 bits (226),  Expect = 9e-18, Method: Composition-based stats.
 Identities = 33/120 (28%), Positives = 59/120 (49%), Gaps = 8/120 (7%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  FS++ +     + ++E  ++  TDIQ +SIP+ L G D++  A TGSGKT AF IPV
Sbjct  47   IKHFSDLPITQNTLRGLKECSFVSLTDIQKKSIPVALKGEDLMGTARTGSGKTLAFLIPV  106

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYD---RGSAFAIGSDGLCCQSREVK  117
            I+I+      + +G           S   +  +  ++   +   +   S GL    ++V+
Sbjct  107  IEILLRNDITEYDG-----LAALIVSPTRELAVQIFEVLAKIGKYNSFSAGLVTGGKDVQ  161


>sp|Q5K5B6|RH57_ORYSJ DEAD-box ATP-dependent RNA helicase 57 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os07g0647900 PE=2 
SV=2
Length=540

 Score = 250 bits (639),  Expect = 3e-73, Method: Composition-based stats.
 Identities = 95/437 (22%), Positives = 155/437 (35%), Gaps = 77/437 (18%)

Query  241  NFGEEEFKFPPKDGFVALSKAPDG---YIVKSQHSGNAQVTQ----TKFLPN---APKAL  290
            N  +  F+ P      A+     G   +      SG           K  P      KA+
Sbjct  160  NLSKLGFQEPTPIQRQAIPILLSGRECFACAPTGSGKTLAFLFPILMKIKPGSKEGVKAV  219

Query  291  IVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRL  350
            I+ P+RELA QT    K+  K     K    L+   ++       +    DI++ TP RL
Sbjct  220  ILCPTRELAAQTTRECKKLAK---GRKFYIKLMTKDLSKSGNFKDMH--CDILISTPLRL  274

Query  351  DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATL  410
            D  V    L+LS+V +LVLDE+D L   G+ + I+ +       +         + SATL
Sbjct  275  DHAVQKRDLDLSRVEYLVLDESDKLFELGFVEVIDSVVKACSNPSIIRS-----LFSATL  329

Query  411  HSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVH  470
                ++ L+  IMH    V +  ++S    +   ++    +  +L               
Sbjct  330  PD-SIETLARTIMHDAVRVIVGRKNSASSLIKQKLIFAGTEKGKLLA-------------  375

Query  471  AKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQG  530
                                        ++  E      +IF ++K     L +      
Sbjct  376  --------------------------LRQSFAESLNPPVLIFVQSKERAKELYKEL----  405

Query  531  GGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINV  590
                          +H D    +R+  ++  + G    LI T+V ARG+D  GV  VIN 
Sbjct  406  -----AFDDVRADVIHADLDEEQRQDAVDNLRAGKTWVLIATEVIARGMDFKGVNCVINY  460

Query  591  TLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCT  650
              P+    Y+HRIGR GRA R G AI+    E +    ++ +          +       
Sbjct  461  DFPESASAYIHRIGRSGRAGRSGEAITFFTEEDKPFLRNIANVL--------ISSGCEVP  512

Query  651  IWYNEMQLLSEIEEHLN  667
             W   +  L   +  +N
Sbjct  513  SWIKALPKLKRKKHRVN  529


 Score = 92.9 bits (229),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 24/94 (26%), Positives = 43/94 (46%), Gaps = 4/94 (4%)

Query  1    MAAFSEM----GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
            +  F E+    G    +   + ++ +  PT IQ ++IP++L G +    A TGSGKT AF
Sbjct  141  LENFEELVSRYGCDSYLVGNLSKLGFQEPTPIQRQAIPILLSGRECFACAPTGSGKTLAF  200

Query  57   SIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNK  90
              P++  +    K+  +      T +  A    +
Sbjct  201  LFPILMKIKPGSKEGVKAVILCPTRELAAQTTRE  234


>sp|A3GHW9|ROK1_PICST ATP-dependent RNA helicase ROK1 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=ROK1 PE=3 SV=1
Length=558

 Score = 250 bits (638),  Expect = 6e-73, Method: Composition-based stats.
 Identities = 101/496 (20%), Positives = 189/496 (38%), Gaps = 69/496 (14%)

Query  204  KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPD  263
             F        L  ++  ++          ++   L  +              +A +    
Sbjct  117  SFQDMIGRFRLDSKLLSNLLEAEFVEPTAIQCESLPISLS--------GRDLIACAPTGS  168

Query  264  GYIVKSQ-HSGNAQVTQTKFLPN--APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRE  320
            G  +        + +  +K  P       L++ P+ ELA Q    ++   +     KL  
Sbjct  169  GKTLAFLIPLIQSLLVSSKGRPKNYGITGLVISPTNELAIQIFQELQILTR---GKKLNV  225

Query  321  LLIIGGVAARDQLSVLE-NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQG  379
             ++   +A +    +++ +  DI+V TP RL D+V   K++LS+V  LV+DEAD L  QG
Sbjct  226  AILSKQLANKLNNDIVKASKYDIIVSTPLRLIDIVKNEKVDLSKVEQLVIDEADKLFDQG  285

Query  380  YSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPD  439
            + +  + + +          +++  + SAT+ S  V++++  IM  P  V +  +++  +
Sbjct  286  FVEQTDDILSHC-----TYTKIRKSMFSATIPSG-VEEMAHSIMRDPIRVIIGRKEAASN  339

Query  440  TVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVR  499
            T+   +V    +  +L                                            
Sbjct  340  TIDQKLVFTGSEEGKLLAIRQMIQ------------------------------------  363

Query  500  AIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLE  559
              +       IIF ++      L    +           + +   +H +R P +R++ ++
Sbjct  364  --EGEFKPPIIIFLQSIHRAKALFHELLYD---------KLNVDVIHAERTPKQREEVIK  412

Query  560  RFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            RFK GD+  LI TDV ARG+D  GV  VIN  +P   Q YVHRIGR GR  + G A++  
Sbjct  413  RFKNGDIWVLITTDVLARGVDFKGVNMVINYDVPQTAQAYVHRIGRTGRGGKAGRAVTFF  472

Query  620  ATEKEKVWYHVCS-SRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIK  678
              E ++    + +  +  GC           T      +   + +E     IS V   +K
Sbjct  473  TKEDDQAVKPIINVMKQSGCEAGFSGWMENMTKMSKNEKKKVKHKEIDRKDISTVPKLVK  532

Query  679  VPVDEFDGKVTYGQKR  694
                + +  +   +KR
Sbjct  533  HKRKQREQMIEASKKR  548


 Score = 95.2 bits (235),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 55/113 (49%), Gaps = 7/113 (6%)

Query  1    MAAFSEM----GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
            + +F +M     +  ++   + E +++ PT IQ ES+P+ L G D++  A TGSGKT AF
Sbjct  115  IGSFQDMIGRFRLDSKLLSNLLEAEFVEPTAIQCESLPISLSGRDLIACAPTGSGKTLAF  174

Query  57   SIPVIQIVYETLK--DQQEGKKGKTTIKTGASVLNKWQ-MNPYDRGSAFAIGS  106
             IP+IQ +  + K   +  G  G     T    +  +Q +    RG    +  
Sbjct  175  LIPLIQSLLVSSKGRPKNYGITGLVISPTNELAIQIFQELQILTRGKKLNVAI  227


>sp|Q9SF41|RH45_ARATH DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis 
thaliana OX=3702 GN=RH45 PE=3 SV=1
Length=989

 Score = 258 bits (660),  Expect = 8e-73, Method: Composition-based stats.
 Identities = 105/500 (21%), Positives = 182/500 (36%), Gaps = 142/500 (28%)

Query  210  KDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKS  269
               GL  +I   +K         ++   L                 + ++K   G   K+
Sbjct  399  HQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMS--------GRDCIGVAKTGSG---KT  447

Query  270  QHSGNAQVTQTKFLP-----NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
                   +   K  P     + P  L++ P+REL +Q  ++I++F K +    +  + + 
Sbjct  448  LGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALG---IICVPVY  504

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLV---STGKLNLSQVRFLVLDEADGLLSQGYS  381
            GG     Q+S L+ G +IVV TPGR+ D++   S    NL +V +LV+DEAD +   G+ 
Sbjct  505  GGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFE  564

Query  382  DFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV  441
              I R+   I          Q ++ SAT     V+ L+ K+++ P  + + G   V   +
Sbjct  565  PQITRIVQNI------RPDRQTVLFSATFP-RQVETLARKVLNKPVEIQVGGRSVVNKDI  617

Query  442  HHVVV--PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVR  499
              +V   P + +  RL E LG+ +                                    
Sbjct  618  TQLVEIRPESERFSRLLELLGEWY------------------------------------  641

Query  500  AIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLE  559
                 +  + ++F R++                                        ++ 
Sbjct  642  -----EKGKVLVFVRSQEK--------------------------------------SIS  658

Query  560  RFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
             FK      LI T VAARG+D+  +  V+N   P+  ++YVHR+GR GRA R G A++ +
Sbjct  659  DFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFI  718

Query  620  ATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKV  679
            + +  K    +  +                                L  +   V  D+K 
Sbjct  719  SEDDAKYAPDLVKA--------------------------------LELSEQPVPDDVKA  746

Query  680  PVDEFDGKVTYGQKRAAGGG  699
              + F  KV  G ++A G G
Sbjct  747  VAEGFMAKVKQGIEQAHGTG  766


 Score = 108 bits (269),  Expect = 8e-23, Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 4/108 (4%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            + + G+  +I   ++++++  P  IQA+++P+I+ G D +  A+TGSGKT  F +P+++ 
Sbjct  398  WHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRH  457

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
            +    KDQ   + G   I    +   +     Y     F+     +C 
Sbjct  458  I----KDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICV  501


>sp|Q4WV71|DBP7_ASPFU ATP-dependent RNA helicase dbp7 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=dbp7 PE=3 SV=1
Length=758

 Score = 255 bits (650),  Expect = 9e-73, Method: Composition-based stats.
 Identities = 102/504 (20%), Positives = 172/504 (34%), Gaps = 99/504 (20%)

Query  205  FSKN------------GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPK  252
            F+KN            G          P +     F    L          + E K P  
Sbjct  105  FTKNPEPQKAEEVKEEGHVENAKPTNAPLIDGLDTFTNLGLSPNLAAHLLTKLELKAPTA  164

Query  253  DGFVALSK----APDGYIVKSQHSGNAQVTQTKFLPN-----------------------  285
                ++S+      D +I     SG         +                         
Sbjct  165  IQKASISQLLKEEGDAFIQAETGSGKTLAYLLPLVQRIMALSKPGAQTDATGQPIVHRDS  224

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
               A+++ P+REL +Q    ++   +      +    +IGG   + + + L  G++I+V 
Sbjct  225  GLFAIVLAPTRELCKQISVVLENLLRC--AHWIVAGTVIGGEKKKSEKARLRKGLNILVA  282

Query  346  TPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK-----  399
            TPGRL D + +T  L++S VR+LVLDE D L+  G+ + I  +  ++       +     
Sbjct  283  TPGRLADHLDNTQALDVSNVRWLVLDEGDRLMELGFEEEIQGIVKKLDARQRPSRIPGIP  342

Query  400  -RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER  458
             R   I+CSATL    V+KL E  +     +    ED                  R+  +
Sbjct  343  ARRTTILCSATL-KMSVQKLGEISLKDAVHIKADPEDEDEKARR---SKAEESAYRVPAQ  398

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
            L +S+                         +  L   +    +++  + +AIIF      
Sbjct  399  LKQSYAVVAA-----------------KLRLVTLTAFFKRTFMRKGSVMKAIIFVSCADS  441

Query  519  CDNLEQYFIQQGGGPD-----------------------------KKGHQFSCVCLHGDR  549
             D   + F ++    D                                +  +   LHG  
Sbjct  442  VDFHFEVFTRKQVKEDGGEPSDTDKSEEKPPSSPHGTIAPATAFSNPSNPVTLFRLHGSL  501

Query  550  KPHERKQNLERF-KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
              + R   L  F K  +   LICTDVA+RG+D+  V  V+        ++++HRIGR  R
Sbjct  502  PQNVRTSTLGAFAKNKEASVLICTDVASRGLDLPNVDLVVEYDPAFSAEDHLHRIGRTAR  561

Query  609  AERMGLAISLVATEKEKVWYHVCS  632
              R G A+  +    E+ +  V  
Sbjct  562  VGRDGRALIFLQPGCEENYVEVLK  585


 Score = 74.0 bits (180),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 8/90 (9%)

Query  3    AFSEMGVMPEIA-QAVEEMDWLLPTDIQAESIPLILGGG-DVLMAAETGSGKTGAFSIPV  60
             F+ +G+ P +A   + +++   PT IQ  SI  +L    D  + AETGSGKT A+ +P+
Sbjct  139  TFTNLGLSPNLAAHLLTKLELKAPTAIQKASISQLLKEEGDAFIQAETGSGKTLAYLLPL  198

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNK  90
            +Q +    K       G  T  TG  ++++
Sbjct  199  VQRIMALSKP------GAQTDATGQPIVHR  222


>sp|A5DLF4|DBP4_PICGU ATP-dependent RNA helicase DBP4 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP4 PE=3 
SV=2
Length=754

 Score = 254 bits (649),  Expect = 1e-72, Method: Composition-based stats.
 Identities = 86/460 (19%), Positives = 170/460 (37%), Gaps = 74/460 (16%)

Query  199  DKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVAL  258
            D+  +   K+   L ++      +          ++   +      E+         +  
Sbjct  41   DEQSISQFKH---LPISEGTYKGLLENNFVSLTDIQKKAIPVALKSED--------VMGT  89

Query  259  SKAPDGYIVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPK  317
            ++   G  +        ++ +      +   ALIV P+RELA QT   + +  KY     
Sbjct  90   ARTGSGKTLAFLVPVIEKLIRENITEYDGLAALIVSPTRELAVQTFEVLTKIGKYNS---  146

Query  318  LRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTG-KLNLSQVRFLVLDEADGLL  376
                L+ GG   + +   +   ++I++GTPGR+   ++    +  S ++ LVLDEAD  L
Sbjct  147  FSAGLVTGGKDVKYEKERISR-MNILIGTPGRISQHLNEAVGMETSNLQVLVLDEADRCL  205

Query  377  SQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED-  435
              G+   I+ +   +P         Q ++ SAT  S +VK L+   +  P  V +  +  
Sbjct  206  DMGFRKQIDNILGHLPVT------RQTLLFSAT-QSDNVKDLARLSLVNPKRVGVSSDQE  258

Query  436  --SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK  493
              S+P+++    + ++  +                                        K
Sbjct  259  VSSIPESLEQYYIKISLAS----------------------------------------K  278

Query  494  GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
             +     +K H   + ++F  +        + F +   G        S + L+G  K   
Sbjct  279  MDVLWSFLKSHLKSKILVFFSSSKQVQFAYEAFRRLQPG-------ISLLKLYGRHKQTS  331

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
            R +   +F +     L  TD+ ARG+D   + +V+ V  P++   YVHR+GR  R  R G
Sbjct  332  RLETTMKFSRAQHACLFATDIVARGLDFPAIDWVVQVDCPEDAATYVHRVGRAARFGRQG  391

Query  614  LAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWY  653
             ++ ++A  +E+       +         +K+     I  
Sbjct  392  KSLLMLAPSEEEGMVKRLEAHKISLKMMNIKQKNKKVISP  431


 Score = 87.5 bits (215),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 8/120 (7%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++ F  + +     + + E +++  TDIQ ++IP+ L   DV+  A TGSGKT AF +PV
Sbjct  45   ISQFKHLPISEGTYKGLLENNFVSLTDIQKKAIPVALKSEDVMGTARTGSGKTLAFLVPV  104

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYD---RGSAFAIGSDGLCCQSREVK  117
            I+ +   +++      G   +    S   +  +  ++   +   +   S GL    ++VK
Sbjct  105  IEKL---IRENITEYDGLAAL--IVSPTRELAVQTFEVLTKIGKYNSFSAGLVTGGKDVK  159


>sp|Q6CN92|SPB4_KLULA ATP-dependent rRNA helicase SPB4 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / 
NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=SPB4 PE=3 SV=1
Length=596

 Score = 250 bits (639),  Expect = 1e-72, Method: Composition-based stats.
 Identities = 89/388 (23%), Positives = 153/388 (39%), Gaps = 54/388 (14%)

Query  270  QHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI--DNPKLRELLIIG--  325
            +     +    KF  +   +LI+ P+RELA Q  + I+ F KY   +   +R  L++G  
Sbjct  67   ERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTS  126

Query  326  GVAARDQLSVL-ENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
              + RD ++   +N   I+VGTPGR+ D +    +  +    +VLDEAD LL   +   +
Sbjct  127  SASVRDDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDV  186

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
              +   +P      K+ +  + SAT+ S    ++ +  M  P  V +K   S P ++   
Sbjct  187  ETILKMLP------KQRRTGLFSATIESAG-AQIFKTGMRNPVKVAVKSNSSAPSSLSIN  239

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
             + + PK                                         K +  +  +  +
Sbjct  240  YIVIPPKD----------------------------------------KLQLLLTLLNNY  259

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
            +  + I++  T I        FI      +          LHG  +   R + L+ F   
Sbjct  260  RFKKCIVYFPTCISVTYFYA-FINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSFTSN  318

Query  565  DVR-FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
                 L  TDVAARGIDI  V  VI +  P +   ++HR GR GRA R+G A+  +   +
Sbjct  319  LTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNEGR  378

Query  624  EKVWYHVCSSRGKGCYNTRLKEDGGCTI  651
            E+ +      +        ++  G   +
Sbjct  379  EEDYVPFLEVKNVKLEEESVELKGVENL  406


 Score = 94.4 bits (233),  Expect = 9e-19, Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 3/102 (3%)

Query  3    AFSEMG--VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++ ++   + P I  A+E M +   T +QA +IPL  G  DV++ + TGSGKT AF IP+
Sbjct  6    SWDDLKCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPI  65

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            ++ + +   +  + KK         S   +     +D    F
Sbjct  66   LERLIKEEANSAKFKKSHF-HSLIISPTRELASQIHDVIEDF  106


>sp|Q6K7R9|RH48_ORYSJ DEAD-box ATP-dependent RNA helicase 48 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os02g0826100 PE=2 
SV=1
Length=811

 Score = 255 bits (651),  Expect = 2e-72, Method: Composition-based stats.
 Identities = 103/512 (20%), Positives = 196/512 (38%), Gaps = 81/512 (16%)

Query  164  GFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDK------------------GHVKF  205
                     K   +   +Y EE   +D  G + ++ +                  G   F
Sbjct  282  SAALRNCDMKKERRALKSYEEE--NNDLAGSFRELREEIKNREVLGAERRRYESRGESLF  339

Query  206  S-KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDG  264
            + K  ++ G++      + +       V++   L      ++     K G    +     
Sbjct  340  TNKRFEECGISPLTVKALTDAGYVQTTVVQETALPMCLEGKDVLVKAKTG----TGKSAA  395

Query  265  YIVKSQHSG-NAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLI  323
            +++ +  S  NA  + T    +   +LI+ P+RELA Q         KY     ++   +
Sbjct  396  FLLPAIESVLNAMKSHTNHRVSPIFSLILCPTRELAIQLTAEANVLLKYHQGIGVQS--L  453

Query  324  IGGVAAR-DQLSVLENGVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQG  379
            IGG   + DQ  +  +   I+V TPGRL D +       + L  ++ LVLDEAD LL  G
Sbjct  454  IGGTRFKLDQRRLESDPCQILVATPGRLLDHIENKSSFSVRLMGLKLLVLDEADHLLDLG  513

Query  380  YSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPD  439
            +   I ++ + +P      ++ Q ++ SAT+   +V+++S+ ++        K +    D
Sbjct  514  FRTDIEKIVDSLP------RQRQTLLFSATIPK-EVRRVSQLVL--------KRDHVFVD  558

Query  440  TVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVR  499
            TV    V    K ++L+  L   H                       E    +       
Sbjct  559  TVGLGAVETPTKVEQLY--LVMPH-----------------------ELHFHMVYRLLRE  593

Query  500  AIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLE  559
             I +    + I+FC T +  + +                + +   +H  +    R +  E
Sbjct  594  HIDQEVDYKVIVFCTTAMVTEFMYIMLRDL---------KLNVREIHSRKPQLYRTRISE  644

Query  560  RFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
             F+      L+ +DV+ RG++  GV  VI V +P ++++Y+HR+GR GR  + G  I L+
Sbjct  645  EFRDSSRLILVTSDVSTRGVNYPGVTLVIQVGVPSDREHYIHRLGRTGREGKSGKGILLL  704

Query  620  ATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTI  651
            A  +E     +     +      + E+    +
Sbjct  705  APWEEYFLNEIHDLPVQKSQTPNIDEEMKRKV  736


 Score = 92.5 bits (228),  Expect = 6e-18, Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 1/111 (1%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F E G+ P   +A+ +  ++  T +Q  ++P+ L G DVL+ A+TG+GK+ AF +P I+ 
Sbjct  344  FEECGISPLTVKALTDAGYVQTTVVQETALPMCLEGKDVLVKAKTGTGKSAAFLLPAIES  403

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSR  114
            V   +K     +              +  +      +       G+  QS 
Sbjct  404  VLNAMKSHTNHRVSP-IFSLILCPTRELAIQLTAEANVLLKYHQGIGVQSL  453


>sp|Q9VHU1|DDX55_DROME Probable ATP-dependent RNA helicase DDX55 
homolog OS=Drosophila melanogaster OX=7227 GN=CG9630 PE=2 
SV=1
Length=613

 Score = 250 bits (639),  Expect = 2e-72, Method: Composition-based stats.
 Identities = 87/419 (21%), Positives = 164/419 (39%), Gaps = 62/419 (15%)

Query  264  GYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLI  323
             ++V        +  +T + P    AL++ P+RELA Q    + QF ++ D   L + LI
Sbjct  60   AFLVPMLEILQRRHKETPWGPKEIGALVISPTRELARQISEVLAQFLEHEDLEHLNQQLI  119

Query  324  IGGVAARDQLSVLENG-VDIVVGTPGRLDDLVSTGKLNL------SQVRFLVLDEADGLL  376
            +GG +  + ++ L      I+V TPGRL+DL      +L        + FLVLDEAD LL
Sbjct  120  VGGNSIEEDIATLRRETPCILVCTPGRLEDLFQRKGDDLNLAAQVKSLEFLVLDEADRLL  179

Query  377  SQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDS  436
              G+   +N +   +P      ++ +  + SAT  + +V  L    +  P  V +K + S
Sbjct  180  DLGFKTSVNNILGYLP------RQRRTGLFSAT-QTTEVTDLIRAGLRNPVLVSVKEKAS  232

Query  437  --VPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG  494
               P  + +    V P+                                 +   ++ L  
Sbjct  233  VNTPARLQNFYRIVEPELK-------------------------------FVALLEFLSS  261

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
               V       + + ++F  T    +   +              + + + +HG  K ++R
Sbjct  262  PATV-------IGKVMVFFPTCACVEYWAEAL-------PPLLPKRTVLGIHGKMK-NKR  306

Query  555  KQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGL  614
               +E+F+      L+CTDV ARG+D+  + +V+    P    ++VHR+GR  R    G 
Sbjct  307  ANVVEKFRNTPQAVLLCTDVLARGLDVPEIEWVVQWDPPSTASSFVHRVGRTARQGNEGN  366

Query  615  AISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQV  673
            A+  +   ++   + +  ++         +E         ++  + +    L      V
Sbjct  367  ALVFLLPSEDAYVHFLKINQKVELTKLLTEEAEDADREKKKLPAVLDQLHRLQAADKGV  425


 Score = 88.6 bits (218),  Expect = 7e-17, Method: Composition-based stats.
 Identities = 26/101 (26%), Positives = 45/101 (45%), Gaps = 2/101 (2%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            ++  +  +   + Q V+   +   T +Q  +IPL+L   DV   A TGSGKT AF +P++
Sbjct  7    SSLDKPPLSDAVLQVVQSFGFQQMTPVQTAAIPLLLARKDVSAEAVTGSGKTLAFLVPML  66

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            +I+    K+   G K         S   +      +  + F
Sbjct  67   EILQRRHKETPWGPK--EIGALVISPTRELARQISEVLAQF  105


>sp|Q3EBD3|RH41_ARATH DEAD-box ATP-dependent RNA helicase 41 OS=Arabidopsis 
thaliana OX=3702 GN=RH41 PE=2 SV=1
Length=505

 Score = 247 bits (631),  Expect = 2e-72, Method: Composition-based stats.
 Identities = 90/428 (21%), Positives = 168/428 (39%), Gaps = 75/428 (18%)

Query  227  LFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP--  284
             F +C L   +L  N     + FP      A+  A  G  + +     +  T +  +P  
Sbjct  111  TFTSCGL-PPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPII  169

Query  285  ---------------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAA  329
                             P A+++ P+REL  Q  +  K   K +     +  L++GG   
Sbjct  170  SRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLP---FKTALVVGGDPM  226

Query  330  RDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHN  389
              QL  ++ GV++++GTPGR+ DL+S   + L  +   VLDE D +L +G+ D + ++  
Sbjct  227  SGQLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQ  286

Query  390  QIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN  449
             + Q        QV++ SAT+ S +V+K+   +      V +   +     V+ + + V+
Sbjct  287  ALSQ-------PQVLLFSATI-SREVEKVGGSLAKEIILVSIGNPNKPNKAVNQLAIWVD  338

Query  450  PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA  509
             K  +                                      +  + +   + H    A
Sbjct  339  AKQKK--------------------------------------QKLFDILRSQNHFKPPA  360

Query  510  IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL  569
            +++  +++  D L        G           + +HG++   ER+  +  F  G+V  L
Sbjct  361  VVYVSSRVGADLLANAITVVTG--------VKALSIHGEKPMKERRDVMGSFLGGEVPVL  412

Query  570  ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            + T V  RG+D+  V  VI   +P   + Y+H IGR  R    G AI  V  +   ++  
Sbjct  413  VSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDDRNLFPD  472

Query  630  VCSSRGKG  637
            + ++    
Sbjct  473  LVAALKSS  480


 Score = 100 bits (249),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 26/105 (25%), Positives = 49/105 (47%), Gaps = 1/105 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F+  G+ P++   +E   +  PT IQ ++IP  L G  +L +A+TGSGKT +F +P+
Sbjct  109  VLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPI  168

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG  105
            I     T   +    + +  +    +   +  +   D+      G
Sbjct  169  ISRC-TTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKG  212


>sp|Q2NL08|DDX55_BOVIN ATP-dependent RNA helicase DDX55 OS=Bos 
taurus OX=9913 GN=DDX55 PE=2 SV=1
Length=601

 Score = 250 bits (637),  Expect = 2e-72, Method: Composition-based stats.
 Identities = 87/375 (23%), Positives = 151/375 (40%), Gaps = 57/375 (15%)

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            + KF  +   A+I+ P+RELA Q    +  F K    P+  ++L IGG    + ++  + 
Sbjct  75   EEKFKKSQVGAIIITPTRELAVQIEEVLSHFTK--PFPQFSQILWIGGRNPGEDVARFKE  132

Query  339  -GVDIVVGTPGRLDDLVSTGKLNL------SQVRFLVLDEADGLLSQGYSDFINRMHNQI  391
             G +I+V TPGRL+D+       L        +  LVLDEAD LL  G+   IN +   +
Sbjct  133  LGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLEVLVLDEADRLLDMGFETSINTILEFL  192

Query  392  PQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPK  451
            P      K+ +  + SAT  + +V+ L    +  P  + +K +     +           
Sbjct  193  P------KQRRTGLFSAT-QTQEVENLVRAGLRNPVRISVKEKGVAASSTQ---------  236

Query  452  TDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAII  511
              +   RL   ++                            K    V  ++ HK ++ ++
Sbjct  237  --KTPSRLENHYMVCKADE----------------------KFNQLVHFLRNHKQEKHLV  272

Query  512  FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLIC  571
            F  T    +   +         +        +C+HG  K ++R +    F+K     L+C
Sbjct  273  FFSTCACVEYYGKAL-------ETLVKGVKIMCIHGKMK-YKRNKIFMEFRKLQSGILVC  324

Query  572  TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVC  631
            TDV ARGIDI  V +V+    P     +VHR GR  R    G A+  +   +E     + 
Sbjct  325  TDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLPMEESYISFLA  384

Query  632  SSRGKGCYNTRLKED  646
             ++       +L+++
Sbjct  385  INQKCPLQEMKLQKN  399


 Score = 94.4 bits (233),  Expect = 9e-19, Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 6/104 (6%)

Query  3    AFSEMG--VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++  +   + P++   + E+ +   T +Q+ +IPL +   DV   A TGSGKT AF IP+
Sbjct  8    SWESLPVPLHPKVLSVLRELGFPYMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPI  67

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
             +I+    +  ++ + G   I    +   +  +   +  S F  
Sbjct  68   EEILLRREEKFKKSQVGAIII----TPTRELAVQIEEVLSHFTK  107


>sp|Q8SR01|DBP4_ENCCU ATP-dependent RNA helicase DBP4 OS=Encephalitozoon 
cuniculi (strain GB-M1) OX=284813 GN=DBP4 PE=3 SV=2
Length=449

 Score = 245 bits (626),  Expect = 3e-72, Method: Composition-based stats.
 Identities = 90/495 (18%), Positives = 177/495 (36%), Gaps = 73/495 (15%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             +DL +   I   ++         ++   +                 +  S+   G  + 
Sbjct  3    FEDLKIDQRIEKGLRENGFVSMKEVQQKVIPMAL--------EGHDIIGSSQTGTGKTLA  54

Query  269  SQHSGNAQV-TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
                   ++ +      +    L++ P+RELA Q  + + +  KY     L   LI+GG+
Sbjct  55   FLVPTLQRLVSLGWGGGDGLGCLVITPTRELALQIFDVLSRIAKYTV---LSTGLIMGGL  111

Query  328  AARDQLSVLENGVDIVVGTPGRLDDLVSTGK-LNLSQVRFLVLDEADGLLSQGYSDFINR  386
             A D+L  + N ++I+V TPGRL   +     L+ + V+ L+LDEAD ++  G+ + +  
Sbjct  112  EAEDELLKV-NQMNILVCTPGRLLQHLQENPYLSTANVQILILDEADKMIEMGFKEVLED  170

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVV  446
            +   IPQ      + Q ++ SAT  +   + L    +  P  + +  E+  P  +     
Sbjct  171  ILEYIPQ------KKQTLLFSATPKASTARILK---LEDPRIISIYKEEGFPSQLRQYFY  221

Query  447  PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM  506
             +                                            K  Y    I  +  
Sbjct  222  MMRTGD----------------------------------------KINYLHTFIGSNPE  241

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
             + I+F  T  +       F +               CL G     +R    +RF K   
Sbjct  242  VKGIVFFSTCKEVKFHCLLFERLKLRN-------RIFCLSGGMSQKQRIDVFKRFVKEKN  294

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
              L CTD+ +RG+D   V  VI    P   + YVHR+GR  R    G +   +   +EK+
Sbjct  295  GILFCTDLGSRGLDFPKVDVVIQYDCPCNVETYVHRVGRTARNSERGESYVYLVHGEEKL  354

Query  627  WYHVCSS---RGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDE  683
               +      + +     +   +        +++ ++ + + L  +  ++    +  +  
Sbjct  355  LTDIQKKGWIKKQEGMEDKGISEEITEGPGVQIRCINNMVKRLVRSSKELNEYCRKYLVT  414

Query  684  FDGKVTYGQKRAAGG  698
            ++  +T+  KR + G
Sbjct  415  YEKFLTFSSKRYSEG  429


 Score = 88.3 bits (217),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 53/118 (45%), Gaps = 8/118 (7%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F ++ +   I + + E  ++   ++Q + IP+ L G D++ +++TG+GKT AF +P +Q 
Sbjct  3    FEDLKIDQRIEKGLRENGFVSMKEVQQKVIPMALEGHDIIGSSQTGTGKTLAFLVPTLQR  62

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYD---RGSAFAIGSDGLCCQSREVKE  118
            +                     +   +  +  +D   R + + + S GL     E ++
Sbjct  63   LVSLGWGGG-----DGLGCLVITPTRELALQIFDVLSRIAKYTVLSTGLIMGGLEAED  115


>sp|Q9VVK8|DDX52_DROME Probable ATP-dependent RNA helicase DDX52 
OS=Drosophila melanogaster OX=7227 GN=ais PE=1 SV=1
Length=594

 Score = 249 bits (636),  Expect = 3e-72, Method: Composition-based stats.
 Identities = 101/527 (19%), Positives = 193/527 (37%), Gaps = 75/527 (14%)

Query  204  KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPD  263
             F    +D  +   +  ++ ++       ++   L             +   +A +    
Sbjct  116  SFGTLTRDFKMLPRLQQNLLSRNFDHPTPIQMQALPVLL--------QRRALMACAPTGS  167

Query  264  GYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLI  323
            G  +         +   K      +AL++ P+RELA+Q      +  +      LR    
Sbjct  168  GKTLAFLTPIINGLRAHKT--TGLRALVLAPTRELAQQIYRECAELTR---ETGLRTH-F  221

Query  324  IGGVAARDQL--SVLENGVDIVVGTPGRLDDLVSTGK--LNLSQVRFLVLDEADGLLSQG  379
            I  V+   Q   +  +   DI+V TP R+  L+      L+LS V + VLDEAD L+ +G
Sbjct  222  ISKVSEAKQKHGAECKQRYDILVSTPNRVRFLLQQEPPLLDLSHVEWFVLDEADRLMEEG  281

Query  380  ---YSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDS  436
               + + ++ ++              V   SAT  +  V K + + +     + +  ++S
Sbjct  282  QNNFKEQLDDIY-----AACSNPTKCVAFFSATY-TVPVAKWALRHLKNLVRITIGVQNS  335

Query  437  VPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEY  496
              +TV   ++ V  +  +L             V  +D  R G   P              
Sbjct  336  ATETVQQELLFVGSEGGKL-------------VAIRDLVRQGLQPP--------------  368

Query  497  AVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQ  556
                         ++F ++K     L +  +  G          +   +H +R  H+R  
Sbjct  369  ------------VLVFVQSKERAKQLFEELLYDG---------INVDVIHAERSQHQRDN  407

Query  557  NLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAI  616
             ++ F++G +  LICT++  RGID  GV  VIN   P    +Y+HRIGR GRA R G AI
Sbjct  408  CVKAFREGSIWVLICTELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAI  467

Query  617  SLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPD  676
            +    E       +                    +  +E ++ ++         +++ P+
Sbjct  468  TFFTQEDTSNLRGIALIIKNSGGTVPEYMLQMKKVRKSEAKMRAKKPLDREDISTKIRPE  527

Query  677  IKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKEAQ  723
             K        K+   ++      + KG+   L    ++L  ++ E +
Sbjct  528  TKGDEKHKSTKLKKVERTEKILKNRKGYEKDLNSKQKKLGNIKTELK  574


 Score = 83.6 bits (205),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 51/144 (35%), Gaps = 18/144 (13%)

Query  6    EMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVY  65
            +  ++P + Q +   ++  PT IQ +++P++L    ++  A TGSGKT AF  P+I  + 
Sbjct  123  DFKMLPRLQQNLLSRNFDHPTPIQMQALPVLLQRRALMACAPTGSGKTLAFLTPIINGLR  182

Query  66   ETLKDQQEGKKGKTTIKTGASVLNKWQMNPY---DRGSAFAIGSDGLCCQSREVKEWHGC  122
                      K         +   +     Y      +           +  E K+ HG 
Sbjct  183  AH--------KTTGLRALVLAPTRELAQQIYRECAELTRETGLRTHFISKVSEAKQKHGA  234

Query  123  RATKGLMKGKHYYEVSCHDQGLCR  146
                     K  Y++        R
Sbjct  235  EC-------KQRYDILVSTPNRVR  251


>sp|A6RSH5|DBP7_BOTFB ATP-dependent RNA helicase dbp7 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=dbp7 PE=3 SV=1
Length=877

 Score = 255 bits (652),  Expect = 3e-72, Method: Composition-based stats.
 Identities = 113/573 (20%), Positives = 201/573 (35%), Gaps = 64/573 (11%)

Query  187  TMHDTIGCYLDID-KGHVKFSKNGKD-LGLAFEIPPHMKNQALFPACVLKNAELKFNFGE  244
                 +      +      F +  +          P  +  A F    L          +
Sbjct  214  KPGQVVSSLFTFNPTSKKTFDEPEEQAEPAKPSNAPLTEEMATFTNLGLSRRLAAHLSTK  273

Query  245  EEFKFPPKDGFVALSK----APDGYIVKSQHSGNAQVTQTKFL---------------PN  285
             + K P      ++ +      D +I     SG         +                +
Sbjct  274  LDMKAPTAIQKASVQQLVSDDSDAFIQAETGSGKTLAYLLPIVERILALSENGVQIHRDS  333

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
               A+I+ P+REL +Q    +++  +    P +    + GG + + + + L  GV+I+V 
Sbjct  334  GLFAIILSPTRELCKQIAAVLEKVLRC--APWIVGTTVNGGESKQSEKARLRKGVNILVA  391

Query  346  TPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQI---------PQVT  395
            TPGRL D + +T  LN++ VR+LVLDE D L+  G+ + I  +  +I           + 
Sbjct  392  TPGRLADHLDNTEVLNVATVRWLVLDEGDRLMELGFEEEIKGIVEKIGRRSVAKANSDMG  451

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED-----------------SVP  438
            S  KR   I+CSAT+   +V++L E  +     +     +                 S P
Sbjct  452  SLPKRRVTILCSATM-KMNVQRLGEISLKDAVHIQADPSEQEKQDKENGVEAQDKAFSAP  510

Query  439  DTVHHVV--VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEY  496
              +      VP   +   L   L ++  R   V         A+S +             
Sbjct  511  TQLKQSYAIVPAKLRLVTLTALLKRAFARKGSVMKAIVFISCADSVDFHFSLFSRTPEAS  570

Query  497  AVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQ  556
            A    +E     A+           L +  I  G       +      LHG    + R  
Sbjct  571  AEVVDEEKVDLPAL-------PKSELVKETIAHGTTISNNSNPVILHKLHGSLAQNIRTA  623

Query  557  NLERFKKG-DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLA  615
             L+ F +  D   +ICTDVA+RG+D+  V +VI    P   ++++HR+GR  RA R G A
Sbjct  624  TLKAFSESADPCVMICTDVASRGLDLPNVDFVIEYDPPFSAEDHLHRVGRTARAGREGRA  683

Query  616  ISLVATEKEKVWYHVCSS---RGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQ  672
            +  +    E+ +  + +S    GK        ED     +    +   E   +    + +
Sbjct  684  LIFLMPGVEEEYVSILASGYREGKKALTRHTAEDLIQKGFGGIGREWEERATNFQLEVER  743

Query  673  VEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHV  705
               D    ++          +  A   + + H+
Sbjct  744  WSLDSPKYLEMARRGYQSHIRAYATHVANERHI  776


 Score = 72.5 bits (176),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 30/133 (23%), Positives = 56/133 (42%), Gaps = 5/133 (4%)

Query  1    MAAFSEMGVMPEIAQAVE-EMDWLLPTDIQAESIPLILGG-GDVLMAAETGSGKTGAFSI  58
            MA F+ +G+   +A  +  ++D   PT IQ  S+  ++    D  + AETGSGKT A+ +
Sbjct  254  MATFTNLGLSRRLAAHLSTKLDMKAPTAIQKASVQQLVSDDSDAFIQAETGSGKTLAYLL  313

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNP---YDRGSAFAIGSDGLCCQSRE  115
            P+++ +    ++  +  +         S   +         ++    A    G      E
Sbjct  314  PIVERILALSENGVQIHRDSGLFAIILSPTRELCKQIAAVLEKVLRCAPWIVGTTVNGGE  373

Query  116  VKEWHGCRATKGL  128
             K+    R  KG+
Sbjct  374  SKQSEKARLRKGV  386


>sp|A4REU9|MAK5_PYRO7 ATP-dependent RNA helicase MAK5 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=MAK5 PE=3 SV=2
Length=760

 Score = 253 bits (646),  Expect = 3e-72, Method: Composition-based stats.
 Identities = 113/489 (23%), Positives = 188/489 (38%), Gaps = 51/489 (10%)

Query  212  LGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQH  271
            LGL+ EI   +          ++ A +       +       G    + A    IV+   
Sbjct  192  LGLSEEIMSSIAKLKFAKPTAIQAATIPEILAGHDVVGKASTGS-GKTLAFGIPIVEKWL  250

Query  272  SGNAQVTQTKFLPNA---PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
            S NA     +        P AL++ P+RELA Q  ++IK     +         + GG++
Sbjct  251  SINASTQSKRVAEGETKTPIALVLSPTRELAHQLTDHIKNLCAGLATSPY-VCSVTGGLS  309

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKL---NLSQVRFLVLDEADGLLSQGYSDFIN  385
               Q   LE   DIVVGTPGRL +++S+          ++FLV+DEAD LLS+G+     
Sbjct  310  VHKQQRQLEK-ADIVVGTPGRLWEVLSSSTKLIQAFRGIKFLVVDEADRLLSEGHFKDAK  368

Query  386  RMHNQIPQVTSD-------GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVP  438
             +   + +V +D       GK  Q +V SAT +    +KL+ K                 
Sbjct  369  DIFEGLDKVETDDDGIIRGGKARQTLVFSATFNKGLQQKLAGKGRFD-------------  415

Query  439  DTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAV  498
                  +   +   + L ++L         +     ++      E   E   + K  Y  
Sbjct  416  ------LATDSQSMEYLLKKLKFREEIPKFIDVNPVSQMAEGLKEGIVECGAMEKDLYLY  469

Query  499  RAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNL  558
              +  H   + ++F  +      L     Q              + LH       R +++
Sbjct  470  SLLLMHPTQRTLVFTNSISSVRRLTPMLQQL---------TLPVIALHSQMIQKARLRSV  520

Query  559  ERF---KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLA  615
            ERF   K G    LI TDVAARG+DI G+  VI+  +P     YVHR GR  RA+  GL+
Sbjct  521  ERFTSSKPGSASILIATDVAARGLDIRGIDVVIHYHVPRTADAYVHRSGRTARADSSGLS  580

Query  616  ISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYN----EMQLLSEIEEHLNCTIS  671
            I + A E+      + +           K+     ++ +    + +L+S++ E +     
Sbjct  581  ILICAPEEVTPTRRLVAKVHASAAAKGKKKGSAGGVFVHSVELDRRLVSKLRERVQLAKQ  640

Query  672  QVEPDIKVP  680
              +  +   
Sbjct  641  IADSTLAKE  649


 Score = 109 bits (272),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 42/162 (26%), Positives = 67/162 (41%), Gaps = 21/162 (13%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++ +  +G+  EI  ++ ++ +  PT IQA +IP IL G DV+  A TGSGKT AF IP+
Sbjct  186  VSEWEPLGLSEEIMSSIAKLKFAKPTAIQAATIPEILAGHDVVGKASTGSGKTLAFGIPI  245

Query  61   IQIVYETLKDQQEGK----KGKTTIKTGASVLNKWQMNPYDRGSAFAIG----------S  106
            ++         Q  +    + KT I    S   +      D       G          +
Sbjct  246  VEKWLSINASTQSKRVAEGETKTPIALVLSPTRELAHQLTDHIKNLCAGLATSPYVCSVT  305

Query  107  DGLCC--QSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCR  146
             GL    Q R++++      T G       +EV      L +
Sbjct  306  GGLSVHKQQRQLEKADIVVGTPGR-----LWEVLSSSTKLIQ  342


>sp|Q8NHQ9|DDX55_HUMAN ATP-dependent RNA helicase DDX55 OS=Homo 
sapiens OX=9606 GN=DDX55 PE=1 SV=3
Length=600

 Score = 249 bits (636),  Expect = 3e-72, Method: Composition-based stats.
 Identities = 86/353 (24%), Positives = 142/353 (40%), Gaps = 57/353 (16%)

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            + K   +   A+I+ P+RELA Q    +  F K+   P+  ++L IGG    + +   + 
Sbjct  75   EEKLKKSQVGAIIITPTRELAIQIDEVLSHFTKHF--PEFSQILWIGGRNPGEDVERFKQ  132

Query  339  -GVDIVVGTPGRLDDLVSTGKLNL------SQVRFLVLDEADGLLSQGYSDFINRMHNQI  391
             G +I+V TPGRL+D+       L        +  LVLDEAD LL  G+   IN +   +
Sbjct  133  QGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFL  192

Query  392  PQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPK  451
            P      K+ +  + SAT  + +V+ L    +  P  V +K +     +           
Sbjct  193  P------KQRRTGLFSAT-QTQEVENLVRAGLRNPVRVSVKEKGVAASSAQ---------  236

Query  452  TDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAII  511
              +   RL   ++                            K    V  ++ HK ++ ++
Sbjct  237  --KTPSRLENYYMVCKADE----------------------KFNQLVHFLRNHKQEKHLV  272

Query  512  FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLIC  571
            F  T    +   +         +        +C+HG  K ++R +    F+K     L+C
Sbjct  273  FFSTCACVEYYGKAL-------EVLVKGVKIMCIHGKMK-YKRNKIFMEFRKLQSGILVC  324

Query  572  TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            TDV ARGIDI  V +V+    P     +VHR GR  R    G A+  +   +E
Sbjct  325  TDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLPMEE  377


 Score = 97.1 bits (240),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 6/104 (6%)

Query  3    AFSEMG--VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++  +   + P++  A+ E+ +   T +Q+ +IPL +   DV   A TGSGKT AF IP+
Sbjct  8    SWESLPVPLHPQVLGALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPI  67

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            ++I+    +  ++ + G   I    +   +  +   +  S F  
Sbjct  68   LEILLRREEKLKKSQVGAIII----TPTRELAIQIDEVLSHFTK  107


>sp|A1DE84|DBP7_NEOFI ATP-dependent RNA helicase dbp7 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp7 
PE=3 SV=1
Length=758

 Score = 253 bits (646),  Expect = 4e-72, Method: Composition-based stats.
 Identities = 102/504 (20%), Positives = 172/504 (34%), Gaps = 99/504 (20%)

Query  205  FSKN------------GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPK  252
            F+KN            G          P +     F    L  +       + E K P  
Sbjct  105  FTKNPEPQKVEEVKEEGHVEDAKPTNAPLIDGLDTFTNLGLSPSLAAHLLTKLELKAPTA  164

Query  253  DGFVALSK----APDGYIVKSQHSGNAQVTQTKFLPN-----------------------  285
                ++S+      D +I     SG         +                         
Sbjct  165  IQKASISQLLKEEGDAFIQAETGSGKTLAYLLPLVQRIMALSKPGAQTDAKGQPIVHRDS  224

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
               A+++ P+REL +Q    ++   +      +    +IGG   + + + L  G++I+V 
Sbjct  225  GLFAIVLAPTRELCKQISVVLENLLRC--AHWIVAGTVIGGEKKKSEKARLRKGLNILVA  282

Query  346  TPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK-----  399
            TPGRL D + +T  L++S VR+LVLDE D L+  G+ + I  +  ++       +     
Sbjct  283  TPGRLADHLDNTQALDVSNVRWLVLDEGDRLMELGFEEEIQGIVKKLDARQRPSRIPGVP  342

Query  400  -RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER  458
             R   I+CSATL    V+KL E  +     +    ED             + K  R  E 
Sbjct  343  TRRTTILCSATL-KMSVQKLGEISLKDAVHIKADPEDE------------DEKARRSKEE  389

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
                 +      +                 +  L   +    +++  + +AIIF      
Sbjct  390  ESAYRVPAQLKQSYAVVAAKL--------RLVTLTAFFKRTFMRKGSVMKAIIFVSCADS  441

Query  519  CDNLEQYFIQQGGGPD-----------------------------KKGHQFSCVCLHGDR  549
             D   + F ++    D                                +  +   LHG  
Sbjct  442  VDFHFEVFTRKQAKEDGDESSDTDKSEDKPPSSPHGTIAPATAFSNPSNPVTLFRLHGSL  501

Query  550  KPHERKQNLERF-KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
              + R   L  F K  +   LICTDVA+RG+D+  V  V+        ++++HRIGR  R
Sbjct  502  PQNVRTSTLGAFAKNKEASVLICTDVASRGLDLPNVDLVVEYDPAFSAEDHLHRIGRTAR  561

Query  609  AERMGLAISLVATEKEKVWYHVCS  632
              R G A+  +    E+ +  V  
Sbjct  562  VGRDGRALIFLQPGCEENYVEVLK  585


 Score = 73.2 bits (178),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 27/82 (33%), Positives = 44/82 (54%), Gaps = 3/82 (4%)

Query  3    AFSEMGVMPEIA-QAVEEMDWLLPTDIQAESIPLILGGG-DVLMAAETGSGKTGAFSIPV  60
             F+ +G+ P +A   + +++   PT IQ  SI  +L    D  + AETGSGKT A+ +P+
Sbjct  139  TFTNLGLSPSLAAHLLTKLELKAPTAIQKASISQLLKEEGDAFIQAETGSGKTLAYLLPL  198

Query  61   IQIVYETLKD-QQEGKKGKTTI  81
            +Q +    K   Q   KG+  +
Sbjct  199  VQRIMALSKPGAQTDAKGQPIV  220


>sp|Q0CF43|DBP7_ASPTN ATP-dependent RNA helicase dbp7 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dbp7 
PE=3 SV=2
Length=769

 Score = 253 bits (646),  Expect = 4e-72, Method: Composition-based stats.
 Identities = 100/427 (23%), Positives = 163/427 (38%), Gaps = 39/427 (9%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNI  306
            +  P     +ALS   +     S      Q        +   A+++ P+REL +Q    +
Sbjct  198  YLLPLVQRIMALSHPTNRTDATSTTDAEGQPV--VHRDSGLFAIVLAPTRELCKQISVVL  255

Query  307  KQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVR  365
            +   +      +    +IGG   + + + L  G++I+V TPGRL D + +T  L++S VR
Sbjct  256  EGLLRC--AHWIVAGTVIGGEKKKSEKARLRKGLNILVATPGRLADHLENTQALDVSNVR  313

Query  366  FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK------RLQVIVCSATLHSFDVKKLS  419
            +LVLDE D L+  G+   +  +  ++       +      +   I+CSATL   +V+KL 
Sbjct  314  WLVLDEGDRLMELGFEQELQGIIKKLDARQRPSRIPGVPTKRTTILCSATL-KMNVQKLG  372

Query  420  EKIMHFPTWVDLKGED---------------SVPDTVHHVVVPVNPKTD--RLWERLGKS  462
            E  +     +     D               +VP  +      V  K     L   L ++
Sbjct  373  EMSLKDAIHIKADPADEDGDAKPKNDDESAFTVPAQLKQSYAIVAAKLRLVTLTAFLKRT  432

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
             +R   V         A+S +   E       +    A      D       TK      
Sbjct  433  FMRKGSVMKAIVFVSCADSVDFHFEVFTRKLQDSDENAEDSDASD-------TKEKPAAF  485

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF-KKGDVRFLICTDVAARGIDI  581
                I +        +  +   LHG    H R   L  F +  D   L+CTDVA+RG+D+
Sbjct  486  THNTIARATAFSNPSNPVTLHRLHGSLPQHVRTSTLASFARNKDASVLVCTDVASRGLDL  545

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS--RGKGCY  639
              V  VI        ++++HRIGR  R  R G A+  +    E+ +  +     R  G  
Sbjct  546  PNVDLVIEYDPAFSAEDHLHRIGRTARLGRDGRALIFLQPGCEEGYVEILKRGYRDGGKA  605

Query  640  NTRLKED  646
             TR   D
Sbjct  606  LTRTNAD  612


 Score = 73.2 bits (178),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query  3    AFSEMGVMPEIA-QAVEEMDWLLPTDIQAESIPLILGGG-DVLMAAETGSGKTGAFSIPV  60
             F+ +G+ P +A   + +++   PT IQ  SI  +L    D  + AETGSGKT A+ +P+
Sbjct  143  TFTNLGLSPTLAAHLLTKLELKAPTAIQKASISQLLKEESDAFIQAETGSGKTLAYLLPL  202

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNK  90
            +Q +              TT   G  V+++
Sbjct  203  VQRIMALSHPTNRTDATSTTDAEGQPVVHR  232


>sp|Q9DGP9|DDX25_XENLA ATP-dependent RNA helicase DDX25 OS=Xenopus 
laevis OX=8355 GN=deadsouth PE=2 SV=1
Length=483

 Score = 246 bits (627),  Expect = 4e-72, Method: Composition-based stats.
 Identities = 103/436 (24%), Positives = 174/436 (40%), Gaps = 83/436 (19%)

Query  228  FPACVLKNAELKFNFG---EEEFKFPPKDGFVALSKAPDGYIVKSQHSGN-------AQV  277
            F    LKN  L+  +        K       + L+  P   I +SQ           A +
Sbjct  99   FEELHLKNELLRGIYAMGFNRPSKIQENALPMMLADPPQNLIAQSQSGTGKTAAFVLAML  158

Query  278  TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE  337
            ++       P+ + + P+ ELA QT   +++  K+    ++    + G    +   S LE
Sbjct  159  SRVDANKKYPQCICLSPTFELALQTGKVVEEMGKFCAGIEV-IYALRGNRPGKG--SRLE  215

Query  338  NGVDIVVGTPGRLDDL-VSTGKLNLSQVRFLVLDEADGLLS-QGYSDFINRMHNQIPQVT  395
                IV+GTPG + D       + +  +   VLDEAD +++ QG+SD   R+   +P   
Sbjct  216  --AQIVIGTPGTVLDWCFKLRLITVENISVFVLDEADVMINVQGHSDHSVRVKRSMP---  270

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL  455
               K  Q+++ SAT     V   +E+I+  P  + LK E+     +         K  + 
Sbjct  271  ---KSCQMLLFSATFED-SVWAFAERIVPDPNIIKLKKEELTLKNIQQFYDQCENKEQK-  325

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRT  515
                                                L   Y V  I      QAI+FC+T
Sbjct  326  ---------------------------------YSALCNLYGVITIA-----QAIVFCQT  347

Query  516  KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA  575
            +     L Q     G              L G+   ++R   ++RF++G  + L+ T+V 
Sbjct  348  RKIASWLSQKLSDDG---------HQVALLSGELPVYDRADMIQRFREGREKVLVTTNVC  398

Query  576  ARGIDIHGVPYVINVTLP------DEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            ARGID+  V  V+N  LP       + + Y+HRIGR GR  + G+A+SL+    E  + +
Sbjct  399  ARGIDVEQVSIVVNFDLPVNVDGSVDFETYLHRIGRTGRFGKKGIAVSLI----ENFFVY  454

Query  630  VCSSRGKGCYNTRLKE  645
            +     +  +NT++ +
Sbjct  455  MLKEI-EDHFNTKITK  469


 Score = 82.1 bits (201),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 55/143 (38%), Gaps = 3/143 (2%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSI  58
            + +F E+ +  E+ + +  M +  P+ IQ  ++P++L     +++  +++G+GKT AF +
Sbjct  96   VKSFEELHLKNELLRGIYAMGFNRPSKIQENALPMMLADPPQNLIAQSQSGTGKTAAFVL  155

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKE  118
             ++  V    K  Q      T      +     +M  +  G        G         E
Sbjct  156  AMLSRVDANKKYPQCICLSPTFELALQTGKVVEEMGKFCAGIEVIYALRGNRPGKGSRLE  215

Query  119  WHGCRATKGLMKGKHYYEVSCHD  141
                  T G +     +++    
Sbjct  216  AQIVIGTPGTVLD-WCFKLRLIT  237


>sp|Q0U6X2|MAK5_PHANO ATP-dependent RNA helicase MAK5 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=MAK5 PE=3 SV=1
Length=817

 Score = 254 bits (648),  Expect = 4e-72, Method: Composition-based stats.
 Identities = 107/475 (23%), Positives = 179/475 (38%), Gaps = 58/475 (12%)

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP----------------  284
            +  + +F  P       + +   G  V  + S  +  T    +P                
Sbjct  263  SLAKLKFSKPTTIQASTIPEIMAGRDVIGKASTGSGKTLAFGIPIIESYLASKSKSKDVK  322

Query  285  -NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV  343
               P ALI+ P+RELA Q   ++                + GG+A + Q   LE   DI+
Sbjct  323  DKTPLALIIAPTRELAHQITAHLTALCAKGAFEAPLIASVTGGLAVQKQRRQLEK-ADII  381

Query  344  VGTPGRLDDLVSTGKLNL---SQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ-------  393
            VGTPGRL +++STG   L    Q+RFLV+DEAD LLSQG    +  +   + +       
Sbjct  382  VGTPGRLWEVISTGHGLLEKVKQIRFLVVDEADRLLSQGNYKELGEILKILEKDAPAEGE  441

Query  394  ---VTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNP  450
                 +     Q +V SAT      +KL+ K           G D++        +    
Sbjct  442  AEAEETTEVERQTLVFSATFQKGLQQKLAGK--------AKGGSDNL--------MSKQQ  485

Query  451  KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAI  510
              + L +++     +   + A  +++  +   E   E     K  Y    +  +   +A+
Sbjct  486  SMEYLLKKINFREEKPKFIDANPSSQMASKLKEGLIECAGTEKDLYLYSLLMFYPKKRAL  545

Query  511  IFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLI  570
            IF  +      L  +                 + LH       R +++ERFK+     L+
Sbjct  546  IFTNSISAVRRLTPFLQNLA---------LPALPLHSSMAQKARLRSIERFKERPGSILV  596

Query  571  CTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
             TDVAARG+DI  V  VI+  LP     YVHR GR  RAE  G +I + A E+      +
Sbjct  597  ATDVAARGLDIPKVELVIHYHLPRAADTYVHRSGRTARAEASGSSILICAPEEVGGVRRL  656

Query  631  CSSRGKGCYNTRLKEDGGCTIWY--NEMQLLSEIEEHLNCTISQVEPDIKVPVDE  683
             +            +     I     + ++++ ++   + +    +  I      
Sbjct  657  IAKVHARADEAPKSKKTAYFIRTLDIDRRIVARLKPRASISKKLADTVIAKEKKH  711


 Score = 100 bits (250),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 70/157 (45%), Gaps = 19/157 (12%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            +A+ E+ +  +I +++ ++ +  PT IQA +IP I+ G DV+  A TGSGKT AF IP+I
Sbjct  249  SAWEELELSTKILESLAKLKFSKPTTIQASTIPEIMAGRDVIGKASTGSGKTLAFGIPII  308

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF-----------AIGSDGLC  110
            +    +    ++ K  KT +    +   +         +A            A  + GL 
Sbjct  309  ESYLASKSKSKDVKD-KTPLALIIAPTRELAHQITAHLTALCAKGAFEAPLIASVTGGLA  367

Query  111  C--QSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLC  145
               Q R++++      T G       +EV     GL 
Sbjct  368  VQKQRRQLEKADIIVGTPGR-----LWEVISTGHGLL  399


>sp|Q4IAS1|DBP4_GIBZE ATP-dependent RNA helicase DBP4 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=DBP4 PE=3 SV=1
Length=793

 Score = 253 bits (646),  Expect = 5e-72, Method: Composition-based stats.
 Identities = 86/433 (20%), Positives = 159/433 (37%), Gaps = 70/433 (16%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
            +K   +L L+      ++         ++   +                 +  +K   G 
Sbjct  50   TKKFSELPLSVPTAEGLEIAHFQTLTDVQARAVPLAL--------KGKDILGAAKTGSGK  101

Query  266  IVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
             +        ++ + ++   +   ALI+ P+RELA Q    +++             L+I
Sbjct  102  TLAFLIPVLEKLYRAQWTEFDGLGALIISPTRELAAQIFEVLRKVG---TKHSFSAGLVI  158

Query  325  GGVAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDF  383
            GG + +++   L + ++I+V TPGR L     T   + + ++ LVLDEAD ++  G+   
Sbjct  159  GGKSLKEEAERL-DRMNILVCTPGRMLQHFDQTAGFDANNLQILVLDEADRIMDMGFQSA  217

Query  384  INRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK--GEDSVPDTV  441
            ++ +   +P      +  Q ++ SAT  S  V  L+   +  P +V +      + P  +
Sbjct  218  VDALIEHLP------RERQTLMFSAT-QSKKVSDLARLSLKDPEYVSVHEAAVSATPTNL  270

Query  442  HHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI  501
                + V P T++L                                       +     I
Sbjct  271  QQHYI-VTPLTEKL---------------------------------------DTLYGFI  290

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
            K +   + I+F  +      + + F     G          + LHG +K   R +   RF
Sbjct  291  KANLKSKIIVFLSSGKQVRFVYESFRHLQPG-------IPLLHLHGRQKQGARMEITSRF  343

Query  562  KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT  621
                   L  TDV ARGID   V +VI    P++   Y+HR+GR  R E  G A+  +  
Sbjct  344  TAAKQTCLFATDVVARGIDFPAVDWVIQADCPEDVDTYIHRVGRTARYESNGRAVLFLDP  403

Query  622  EKEKVWYHVCSSR  634
             +E         +
Sbjct  404  SEEPGMLKKLELK  416


 Score = 89.8 bits (221),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 56/120 (47%), Gaps = 8/120 (7%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              FSE+ +    A+ +E   +   TD+QA ++PL L G D+L AA+TGSGKT AF IPV+
Sbjct  51   KKFSELPLSVPTAEGLEIAHFQTLTDVQARAVPLALKGKDILGAAKTGSGKTLAFLIPVL  110

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG---SDGLCCQSREVKE  118
            + +Y     + +G           S   +     ++           S GL    + +KE
Sbjct  111  EKLYRAQWTEFDG-----LGALIISPTRELAAQIFEVLRKVGTKHSFSAGLVIGGKSLKE  165


>sp|Q5ZLN8|DDX55_CHICK ATP-dependent RNA helicase DDX55 OS=Gallus 
gallus OX=9031 GN=DDX55 PE=2 SV=1
Length=591

 Score = 248 bits (634),  Expect = 6e-72, Method: Composition-based stats.
 Identities = 87/353 (25%), Positives = 144/353 (41%), Gaps = 57/353 (16%)

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-  337
            + K       A+I+ P+RELA Q    +  F K+   PK  ++L+IGG    + +   + 
Sbjct  75   EEKLKKMQVGAIIITPTRELAIQIDEVLTHFTKHF--PKFSQILLIGGRNPMEDVEKFKE  132

Query  338  NGVDIVVGTPGRLDDLVSTGKLNL------SQVRFLVLDEADGLLSQGYSDFINRMHNQI  391
            +G +I+V TPGRL+DL       L        +  LVLDEAD LL  G+   +N +   +
Sbjct  133  HGGNIIVATPGRLEDLFRRKADGLDLASCVKSLDVLVLDEADRLLDMGFESSLNAILAFL  192

Query  392  PQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPK  451
            P      K+ +  + SAT  + +V+ L    +  P  + +K +                 
Sbjct  193  P------KQRRTGLFSAT-QTQEVENLVRAGLRNPVRISVKEKGVAATNTQ---------  236

Query  452  TDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAII  511
              +   RL   ++                            K    V  +++HK ++ ++
Sbjct  237  --KTPTRLENYYMICKADE----------------------KFNQLVHFLRQHKQEKHLV  272

Query  512  FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLIC  571
            F  T    +   +         +    Q   +C+HG  K H+R +    F++     L+C
Sbjct  273  FFSTCACVEYYGKAL-------ESLIKQVKIMCIHGKMK-HKRNKIFTEFRRLAGGILVC  324

Query  572  TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            TDV ARGIDI  V +V+    P     +VHR GR  R    G A+  +   +E
Sbjct  325  TDVMARGIDIPEVHWVLQYDPPSSASAFVHRCGRTARIGNAGSALVFLLPMEE  377


 Score = 96.4 bits (238),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 50/103 (49%), Gaps = 6/103 (6%)

Query  4    FSEMG--VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            +S +   + P + +A++++ +   T +Q+ +IPL +   DV   A TGSGKT AF IP++
Sbjct  9    WSSLPVALSPGVLRALQDLGFDRMTPVQSATIPLFMSNKDVAAEAVTGSGKTLAFVIPIL  68

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            +I+      ++E  K         +   +  +   +  + F  
Sbjct  69   EILLR----REEKLKKMQVGAIIITPTRELAIQIDEVLTHFTK  107


>sp|Q0CI35|MAK5_ASPTN ATP-dependent RNA helicase mak5 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=mak5 
PE=3 SV=2
Length=774

 Score = 253 bits (645),  Expect = 6e-72, Method: Composition-based stats.
 Identities = 103/495 (21%), Positives = 193/495 (39%), Gaps = 55/495 (11%)

Query  210  KDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGF---VALSKAPDGYI  266
            + LGL+ EI   +          ++ + +       +       G    +A       Y 
Sbjct  205  ESLGLSPEILNSLSKLKFSSPTAVQKSCIPPILDGHDVVGKASTGSGKTLAFGIPILEYY  264

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
            ++ +        +      +P ALI+ P+RELA Q + +I +   +      R  L+ GG
Sbjct  265  LEKKRRET--KNKDDKKETSPIALILSPTRELAHQLVKHIGEVITHAPGVNARIALLTGG  322

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDF  383
            ++ + Q  +L NG DIV+GTPGR+ +++S G+     + ++++LV+DEAD LLS+G+   
Sbjct  323  LSVQKQQRLL-NGADIVIGTPGRVWEVLSGGQGLISKMKEIKYLVVDEADRLLSEGHFKE  381

Query  384  INRMHNQIPQ---------------VTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTW  428
             + +   + +                     + Q +V SAT H    +KL+ K       
Sbjct  382  AHEILAALDREEINDFPGAEEDESDDEDSKTQRQTLVFSATFHRDLQQKLAGKG------  435

Query  429  VDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEA  488
                G D +               + L ++L     +   +     ++      E   E 
Sbjct  436  -KWTGSDLMNK---------QESMEYLLKKLNFREEKPKFIDVNPVSQMAEGLKEGIVEC  485

Query  489  IKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGD  548
              + K  Y    +  H   + ++F  +      L Q+          +  Q   + LH  
Sbjct  486  AAMEKDLYLYTLLLYHPKHRTLVFTNSISAVRRLTQFL---------QALQLPALALHSS  536

Query  549  RKPHERKQNLERFKKGDVR---FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR  605
                 R +++ERF          L+ TDVAARG+DI G+ +VI+   P     YVHR GR
Sbjct  537  MAQKARLRSVERFSSPTADPSTILVATDVAARGLDIKGIDFVIHYHAPRTADTYVHRSGR  596

Query  606  VGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEH  665
              RA   G ++ + A E+      + +       N +        +   + +++S +++ 
Sbjct  597  TARAGASGKSVIICAPEEMVGVVRLAAKVHANMANGKRLPLESLEL---DRRIVSRVKQR  653

Query  666  LNCTISQVEPDIKVP  680
            +       + +I   
Sbjct  654  VTLAARICDANIAKE  668


 Score = 115 bits (289),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 51/90 (57%), Gaps = 0/90 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++A+  +G+ PEI  ++ ++ +  PT +Q   IP IL G DV+  A TGSGKT AF IP+
Sbjct  201  ISAWESLGLSPEILNSLSKLKFSSPTAVQKSCIPPILDGHDVVGKASTGSGKTLAFGIPI  260

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNK  90
            ++   E  + + + K  K      A +L+ 
Sbjct  261  LEYYLEKKRRETKNKDDKKETSPIALILSP  290


>sp|Q2UMY7|MAK5_ASPOR ATP-dependent RNA helicase mak5 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=mak5 
PE=3 SV=1
Length=757

 Score = 252 bits (643),  Expect = 7e-72, Method: Composition-based stats.
 Identities = 102/496 (21%), Positives = 192/496 (39%), Gaps = 56/496 (11%)

Query  210  KDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGF---VALSKAPDGYI  266
            + LGL+ EI   +          ++ A +       +       G    +A       Y 
Sbjct  187  ESLGLSPEILAGISKMKFTTPTSVQKACIPPILDGRDVIGKASTGSGKTLAFGIPILEYY  246

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
            ++   S   + ++       P AL++ P+RELA Q   +I +   +      R  L+ GG
Sbjct  247  LEKLRSKTQKDSEKTE--TTPIALVLSPTRELAHQLAKHIGEVVSHAPGVNARIALLTGG  304

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDF  383
            ++ + Q  VL N  DIV+GTPGR+ +++S+G      +  ++FLV+DEAD LLS+G+   
Sbjct  305  LSLQKQQRVLTN-ADIVIGTPGRVWEVLSSGHGLIRKMQAIKFLVIDEADRLLSEGHFKE  363

Query  384  INRMHNQIPQV----------------TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPT  427
             + +   + +V                       Q +V SAT H    +KL+ K      
Sbjct  364  AHEILAALDRVVDGEFPDESSDESDDELDPKSGRQTLVFSATFHRDLQQKLAGK------  417

Query  428  WVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSE  487
                 G+ +  D +           + L ++L     +   +     ++   N  E   E
Sbjct  418  -----GKWTGGDIMSQ-----KESMEYLLQKLNFREEKPRFIDVNPVSQMAENLKEGIVE  467

Query  488  AIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHG  547
               + K  +    +  H   + ++F  +                    +  Q   + LH 
Sbjct  468  CAAMEKDLFLYTLLLYHPKHRTLVFTNSISAVRR---------LTQLLQTLQLPALALHS  518

Query  548  DRKPHERKQNLERFKKGDVR---FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
                  R +++ERF          L+ TDVAARG+DI G+ +V++   P     YVHR G
Sbjct  519  SMAQKARLRSVERFSSPSSDPSSILVATDVAARGLDIKGIDFVVHYHAPRTADAYVHRSG  578

Query  605  RVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEE  664
            R  RA   G ++ + + ++      + +       N +        +   + +++S +++
Sbjct  579  RTARAGASGKSVIICSPDEMVGVVRLAAKVHANMANRKKVPLESLEL---DRRVVSRVKQ  635

Query  665  HLNCTISQVEPDIKVP  680
             +      V+ +I   
Sbjct  636  RVTLAARIVDSNIAKE  651


 Score = 118 bits (296),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 34/90 (38%), Positives = 51/90 (57%), Gaps = 0/90 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++A+  +G+ PEI   + +M +  PT +Q   IP IL G DV+  A TGSGKT AF IP+
Sbjct  183  VSAWESLGLSPEILAGISKMKFTTPTSVQKACIPPILDGRDVIGKASTGSGKTLAFGIPI  242

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNK  90
            ++   E L+ + +    KT     A VL+ 
Sbjct  243  LEYYLEKLRSKTQKDSEKTETTPIALVLSP  272


>sp|A5DIX5|ROK1_PICGU ATP-dependent RNA helicase ROK1 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=ROK1 PE=3 
SV=2
Length=537

 Score = 246 bits (629),  Expect = 8e-72, Method: Composition-based stats.
 Identities = 108/489 (22%), Positives = 184/489 (38%), Gaps = 84/489 (17%)

Query  227  LFPACVLKNAELK--FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN----------  274
            L   C L    L      G  E      +   A ++  D        SG           
Sbjct  107  LIARCNLNRKLLANLIASGYSEPTAIQCEAIPASAEGRDLIACAPTGSGKTLAYLIPMAQ  166

Query  275  AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLS  334
            A ++  K      + +++ P+ ELA Q    +           L   L+   VA++   S
Sbjct  167  ALISSPKTKNYGIRGVVIAPTNELAIQIYQTLAPM---CRGSNLNVTLLSKQVASKISSS  223

Query  335  VL-ENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ  393
            ++  N  D+++ TP RL DLV   +++LS+V  LV+DEAD L   G+ +  + + +    
Sbjct  224  IISANKFDVLICTPLRLIDLVKKEQVDLSKVEHLVIDEADKLFDHGFVEQTDEILSHC--  281

Query  394  VTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTD  453
                    +  + SAT+ S  V++++  IM     + +  ++    ++   +V    +  
Sbjct  282  ---TLPTRRTSMFSATIPSG-VEEMANSIMKDQIRIIVGHKEGASTSIDQKLVFTGNEEG  337

Query  454  RLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFC  513
            +L             +  +   + G   P                           IIF 
Sbjct  338  KL-------------LAIRQMVQQGEFKP-------------------------PIIIFL  359

Query  514  RTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTD  573
            ++      L    I           + +   +H +R P +R++ + RFK GD   LI TD
Sbjct  360  QSIPRAKALFHELIYD---------KLNVEVIHAERTPKQREEAIRRFKNGDAWVLITTD  410

Query  574  VAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS-  632
            V ARG+D  GV  VIN  +P   Q YVHRIGR GR  + G A++    E +     V + 
Sbjct  411  VLARGVDFKGVNLVINYDVPQTSQAYVHRIGRTGRGGKEGKAVTFFTKEDKLAIKPVLNV  470

Query  633  SRGKGCYNTRLKEDGGCTIWYNEMQLLSEIE-------EHLNCTISQVEPDIKVPVDEFD  685
             +  GC+        G + W   M+ L++ E       E     IS V   +     +  
Sbjct  471  MKQSGCHE-------GYSEWMESMEKLTKKEKQQIKQHEIKRKKISTVPQVVSKKRKQRK  523

Query  686  GKVTYGQKR  694
              +   ++R
Sbjct  524  EMIEASKRR  532


 Score = 104 bits (259),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 5/110 (5%)

Query  1    MAAFSEM----GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
            + +F ++     +  ++   +    +  PT IQ E+IP    G D++  A TGSGKT A+
Sbjct  101  IGSFEDLIARCNLNRKLLANLIASGYSEPTAIQCEAIPASAEGRDLIACAPTGSGKTLAY  160

Query  57   SIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQ-MNPYDRGSAFAIG  105
             IP+ Q +  + K +  G +G     T    +  +Q + P  RGS   + 
Sbjct  161  LIPMAQALISSPKTKNYGIRGVVIAPTNELAIQIYQTLAPMCRGSNLNVT  210


>sp|A3LWH3|DBP7_PICST ATP-dependent RNA helicase DBP7 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DPB7 PE=3 SV=2
Length=733

 Score = 251 bits (641),  Expect = 1e-71, Method: Composition-based stats.
 Identities = 107/446 (24%), Positives = 179/446 (40%), Gaps = 53/446 (12%)

Query  222  MKNQALFPACVLKNAELKFNFGEEEFKFPPKDG----FVALSKAPDGYIVKSQHSGNAQV  277
            +++ + F    +     K       FK P K         LS   D +I     SG    
Sbjct  140  VEDASTFEGLGINERLSKHLTETLRFKNPTKVQKSVIPTMLSTERDLFIKAQTGSGKTLS  199

Query  278  TQTKF-------------LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
                                +   A+I+ P+RELA Q    ++   +   +  +   ++I
Sbjct  200  FLLPIFHKLMMENKHKINRDSGLFAVILTPTRELATQIYGVLETLTRCYHH--IVPGIVI  257

Query  325  GGVAARDQLSVLENGVDIVVGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDF  383
            GG   + + + +  GV+I+VGTPGRL D + +T  L++SQ+R+L+LDE D L+  G+ + 
Sbjct  258  GGEKKKSEKARIRKGVNILVGTPGRLADHMENTESLDISQLRWLILDEGDKLVELGFEET  317

Query  384  INRMHNQIPQVTSDGK----------RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG  433
            I ++ N I + +   +          R   ++CSAT+ + +V+KL   I++ P  +    
Sbjct  318  ITKITNLITRNSQIMESMHKWQGLPVRRINLLCSATMQN-NVEKLGSIILNNPEMISDGS  376

Query  434  -------EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWS  486
                   E + PD +   VV V PK   +        I +D     ++TR         S
Sbjct  377  SSGKHSEEVTAPDQLIQNVVVVPPKLRLVTLSAILKKISSDMSGTNNSTRTIVFFSCSDS  436

Query  487  EAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLH  546
                           K+ K D+       K++   +E      G G        +   LH
Sbjct  437  VNFHFDVFTRGGNTFKKVKNDE-----SGKLETVEVENDTPLIGQGT-------AVYKLH  484

Query  547  GDRKPHERKQNLERF---KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI  603
            G      R   L+ F    K +   L CTDVA+RG+D+  +  VI    P    +++HRI
Sbjct  485  GSLSQQTRTSTLQAFIKDSKSNHSILFCTDVASRGLDLPNIASVIEYDPPFTIDDHLHRI  544

Query  604  GRVGRAERMGLAISLVATEKEKVWYH  629
            GR  R  + G A   +    E+ +  
Sbjct  545  GRSARVGKEGTATLFLLPGNEEGYVD  570


 Score = 77.9 bits (190),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 52/132 (39%), Gaps = 7/132 (5%)

Query  2    AAFSEMGVMPEIAQAVEE-MDWLLPTDIQAESIPLILG-GGDVLMAAETGSGKTGAFSIP  59
            + F  +G+   +++ + E + +  PT +Q   IP +L    D+ + A+TGSGKT +F +P
Sbjct  144  STFEGLGINERLSKHLTETLRFKNPTKVQKSVIPTMLSTERDLFIKAQTGSGKTLSFLLP  203

Query  60   VIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQ---SREV  116
            +   +    K +     G   +    +   +     Y            +        E 
Sbjct  204  IFHKLMMENKHKINRDSGLFAV--ILTPTRELATQIYGVLETLTRCYHHIVPGIVIGGEK  261

Query  117  KEWHGCRATKGL  128
            K+    R  KG+
Sbjct  262  KKSEKARIRKGV  273


>sp|Q6ZPL9|DDX55_MOUSE ATP-dependent RNA helicase DDX55 OS=Mus 
musculus OX=10090 GN=Ddx55 PE=1 SV=2
Length=600

 Score = 248 bits (632),  Expect = 1e-71, Method: Composition-based stats.
 Identities = 83/354 (23%), Positives = 142/354 (40%), Gaps = 57/354 (16%)

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            + K   N   A+++ P+RELA Q    +  F K+   P+  ++L IGG    + +   + 
Sbjct  75   EEKLKKNQVGAIVITPTRELAIQIDEVLSHFTKHF--PQFSQILWIGGRNPGEDVERFKQ  132

Query  339  -GVDIVVGTPGRLDDLVSTGKLNL------SQVRFLVLDEADGLLSQGYSDFINRMHNQI  391
             G +I+V TPGRL+D+       L        +  LVLDEAD LL  G+   IN +   +
Sbjct  133  HGGNIIVATPGRLEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINTILEFL  192

Query  392  PQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPK  451
            P      K+ +  + SAT  + +V+ L    +  P  + +K +     +           
Sbjct  193  P------KQRRTGLFSAT-QTQEVENLVRAGLRNPVRISVKEKGVAASSTQ---------  236

Query  452  TDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAII  511
              +   RL   ++                            K    V  ++  + ++ ++
Sbjct  237  --KTPSRLENHYMICKADE----------------------KFNQLVHFLRSRQQEKHLV  272

Query  512  FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLIC  571
            F  T    +   +         +    +   +C+HG  K ++R +    F+K     L+C
Sbjct  273  FFSTCACVEYYGKAL-------EALLKKVKILCIHGKMK-YKRNKIFMEFRKLQSGILVC  324

Query  572  TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            TDV ARGIDI  V +V+    P     +VHR GR  R    G A+  +   +E 
Sbjct  325  TDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLPMEEA  378


 Score = 96.7 bits (239),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 27/104 (26%), Positives = 50/104 (48%), Gaps = 6/104 (6%)

Query  3    AFSEM--GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            A+  +   + P +  A+ E+ +   T +Q+ +IPL +   DV   A TGSGKT AF IP+
Sbjct  8    AWESLQVPLHPRVLGALRELGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPI  67

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            ++I+    +  ++ + G   I    +   +  +   +  S F  
Sbjct  68   LEILLRREEKLKKNQVGAIVI----TPTRELAIQIDEVLSHFTK  107


>sp|Q4HZ68|DBP7_GIBZE ATP-dependent RNA helicase DBP7 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=DBP7 PE=3 SV=1
Length=744

 Score = 251 bits (640),  Expect = 2e-71, Method: Composition-based stats.
 Identities = 125/602 (21%), Positives = 217/602 (36%), Gaps = 84/602 (14%)

Query  166  GFGGTGKKSHNKQFDNYGEEFTMHDTIG--CYLDIDKGHVKFSKNGKDLGLAFEIPPHMK  223
            G GG   +S + Q D   ++      I      +  +      K G+         P + 
Sbjct  94   GHGGASGQSRSHQSDGKSKQ-----VISRLFSFNPAQKTEADEKQGEWTAPEATNAP-LS  147

Query  224  NQALFPACVLKNAELKFNFGEEEFKFPPKDG----FVALSKAPDGYIVKSQHSGNAQVTQ  279
            + A F    +    +    G+   + P           L+ + D ++     SG      
Sbjct  148  DVANFGTLTISARLVD-ELGKMGLERPTGIQNKVIPHMLTSSSDAFVQAETGSGKTLAYL  206

Query  280  TKFL----------------PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLI  323
               L                 +   A+IV P+RELA+Q    +++  +    P L    I
Sbjct  207  LPILHRVLLLSVKGGAQIHRDSGAFAIIVAPTRELAKQVHTVLEKLIR--PFPWLVSTAI  264

Query  324  IGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSD  382
             GG + + + + +  GV+ +V TPGRL D + +T  LNLS VR+L+LDE D L+  G+ D
Sbjct  265  TGGESKKAEKARIRKGVNFLVATPGRLADHIDNTKALNLSIVRWLILDEGDRLMDLGFED  324

Query  383  FINRMH---------NQIPQVTSD---GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVD  430
             + ++          + +P  T      +R   ++CSAT+   +V+KL E  +   T++ 
Sbjct  325  DLKKVITALKAVDVSDTLPDGTPLKALPERRVTVLCSATM-KMNVQKLGEMSLADATFLA  383

Query  431  LKGED----------SVPDTVHHV--VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPG  478
             K ED            P  +H    VVP   +   L   L  +  R             
Sbjct  384  AKKEDMELDVQKSEMKAPAQLHQYYSVVPAKLRLVTLISYLKSTFSRRGKTMKAIIFISC  443

Query  479  ANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGH  538
            A+S +   E ++      A                    + +++ +   +          
Sbjct  444  ADSVDFHYELLRDPNTTEAP--------------VAASKEAESISKTVSKAAYITSPASP  489

Query  539  QFSCVCLHGDRKPHERKQNLERFKKGDVR-FLICTDVAARGIDIHGVPYVINVTLPDEKQ  597
            +     +HG      R   L+ F        LI TDV++RG+DI  V  VI         
Sbjct  490  EVVLHRMHGSLSQPIRTATLKSFSACKSPSLLITTDVSSRGLDIPSVDLVIEYDPAFSFA  549

Query  598  NYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS-----------SRGKGCYNTRLKED  646
            +++HR+GR  RA + G A+  +    E+ +  +             S  +    T+L+  
Sbjct  550  DHIHRVGRTARAGKPGDALLFLLPGTEEGYIELMKGSTTPTSQSYDSILQKGMMTKLEFP  609

Query  647  GGCTIWYNEMQLLSEIEEHLNCTISQ-VEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHV  705
               T    +     +  E L   I Q +  D K      +G  ++ +  A      + H 
Sbjct  610  VETTAKPEDGHSFHDKAESLQLHIEQRLLEDTKRLELARNGFKSHIRAYATHTKEERKHF  669

Query  706  DI  707
            DI
Sbjct  670  DI  671


 Score = 76.3 bits (186),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 50/133 (38%), Gaps = 5/133 (4%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLIL-GGGDVLMAAETGSGKTGAFSIP  59
            +A F  + +   +   + +M    PT IQ + IP +L    D  + AETGSGKT A+ +P
Sbjct  149  VANFGTLTISARLVDELGKMGLERPTGIQNKVIPHMLTSSSDAFVQAETGSGKTLAYLLP  208

Query  60   VIQI-VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA---IGSDGLCCQSRE  115
            ++   +  ++K   +  +         +   +     +                     E
Sbjct  209  ILHRVLLLSVKGGAQIHRDSGAFAIIVAPTRELAKQVHTVLEKLIRPFPWLVSTAITGGE  268

Query  116  VKEWHGCRATKGL  128
             K+    R  KG+
Sbjct  269  SKKAEKARIRKGV  281


>sp|A7F8V8|DBP7_SCLS1 ATP-dependent RNA helicase dbp7 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=dbp7 PE=3 SV=1
Length=877

 Score = 253 bits (646),  Expect = 2e-71, Method: Composition-based stats.
 Identities = 114/548 (21%), Positives = 201/548 (37%), Gaps = 62/548 (11%)

Query  210  KDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDG----FVALSKAPDGY  265
            +         P  +  A F    L          + + K P           +S   D +
Sbjct  239  ESEPAKPSNAPLTEEMATFTNLGLSRRLAAHLSTKLDMKAPTAIQKASVTQLISDDSDAF  298

Query  266  IVKSQHSGNAQVTQTKFL---------------PNAPKALIVEPSRELAEQTLNNIKQFK  310
            I     SG         +                +   A+I+ P+REL +Q    +++  
Sbjct  299  IQAETGSGKTLAYLLPIVERILALSDNGIQIHRDSGLFAIILSPTRELCKQIAAVLEKVL  358

Query  311  KYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVL  369
            +    P +    + GG + + + + L  GV+I+V TPGRL D + +T  LN++ VR+LVL
Sbjct  359  RC--APWIVGTTVNGGESKQSEKARLRKGVNILVATPGRLADHLDNTEVLNVATVRWLVL  416

Query  370  DEADGLLSQGYSDFINRMHNQI---------PQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
            DE D L+  G+ + I  +  +I          ++ S  KR   I+CSAT+   +V++L E
Sbjct  417  DEGDRLMELGFEEEIKGIVEKIGRRSVASGSSEMMSLPKRRVTILCSATM-KMNVQRLGE  475

Query  421  KIMHFPTWVDLKGED-----------------SVPDTVHHVV--VPVNPKTDRLWERLGK  461
              +     +     +                 S P  +      VP   +   L   L +
Sbjct  476  ISLKDAVHIQADPSEQEKQDKANGIEADDKAFSAPTQLKQSYAIVPAKLRLVTLTALLKR  535

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
            +  R   V         A+S +           E +  A +E K+D         +    
Sbjct  536  AFARKGSVMKAIVFMSCADSVDFHFSLFSR-SAEKSAEASEEGKVDPP------TLPKSE  588

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG-DVRFLICTDVAARGID  580
            L +  I  G       +      LHG    + R   L+ + +  D   LICTDVA+RG+D
Sbjct  589  LIKETITHGATISNNSNPVILHKLHGSLAQNIRTATLKAYSESADPCVLICTDVASRGLD  648

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS---RGKG  637
            +  V +VI    P   ++++HR+GR  RA R G A+  +    E+ +  + +S    G+ 
Sbjct  649  LPNVDFVIEYDPPFSAEDHLHRVGRTARAGREGRALIFLMPGTEEEYVSILASGYREGRK  708

Query  638  CYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAG  697
                   ED     +    +   E   +    + +   D    ++          +  A 
Sbjct  709  ALTHHTAEDLIQKGFGGTGREWEERATNFQLEVERWSLDSPRYLEMARRGFQSHIRAYAT  768

Query  698  GGSYKGHV  705
              + + H+
Sbjct  769  HVANERHI  776


 Score = 72.9 bits (177),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 30/133 (23%), Positives = 55/133 (41%), Gaps = 5/133 (4%)

Query  1    MAAFSEMGVMPEIAQAVE-EMDWLLPTDIQAESIPLILGG-GDVLMAAETGSGKTGAFSI  58
            MA F+ +G+   +A  +  ++D   PT IQ  S+  ++    D  + AETGSGKT A+ +
Sbjct  254  MATFTNLGLSRRLAAHLSTKLDMKAPTAIQKASVTQLISDDSDAFIQAETGSGKTLAYLL  313

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNP---YDRGSAFAIGSDGLCCQSRE  115
            P+++ +     +  +  +         S   +         ++    A    G      E
Sbjct  314  PIVERILALSDNGIQIHRDSGLFAIILSPTRELCKQIAAVLEKVLRCAPWIVGTTVNGGE  373

Query  116  VKEWHGCRATKGL  128
             K+    R  KG+
Sbjct  374  SKQSEKARLRKGV  386


>sp|A3GGE9|DBP4_PICST ATP-dependent RNA helicase DBP4 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DBP4 PE=3 SV=2
Length=765

 Score = 251 bits (641),  Expect = 2e-71, Method: Composition-based stats.
 Identities = 87/461 (19%), Positives = 167/461 (36%), Gaps = 74/461 (16%)

Query  198  IDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVA  257
            +D+  +       DL +  E    +   +      ++   +      E+         + 
Sbjct  41   VDEKSISQFS---DLPITQETLRGLNESSFMSLTDIQKKTIPIALKGED--------LMG  89

Query  258  LSKAPDGYIVKSQHSGNAQVTQTKFLPN-APKALIVEPSRELAEQTLNNIKQFKKYIDNP  316
             ++   G  +         + + K   +    ALIV P+RELA QT   + +  KY    
Sbjct  90   TARTGSGKTLAFLIPVVESLIRNKITEHDGLAALIVSPTRELAVQTFEVLTKIGKYN---  146

Query  317  KLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTG-KLNLSQVRFLVLDEADGL  375
                 L+ GG   + +   +   ++I+VGTPGR+   ++    +  S ++ LVLDEAD  
Sbjct  147  TFSAGLVTGGKDVQYEKERVSR-MNILVGTPGRISQHLNEAVGMETSNLQVLVLDEADRC  205

Query  376  LSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED  435
            L  G+   I+ +   +P         Q ++ SAT+ S  VK L+   +  P  + +  + 
Sbjct  206  LDMGFKKQIDNIVGHLP------PTRQTLLFSATV-SDSVKDLARLSLTNPKRIGVSSDQ  258

Query  436  ---SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKIL  492
               + P+++    + +                                            
Sbjct  259  DVSATPESLDQYYIRIPLDE----------------------------------------  278

Query  493  KGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPH  552
            K +     IK H   + ++F  +        + F     G        S + L+G  K  
Sbjct  279  KLDVLWSFIKSHLKSKILVFFSSSKQVQYAYETFRTLQPG-------ISLLKLYGRHKQT  331

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM  612
             R +   +F +     L  TD+ ARG+D   + +V+ V  P++   YVHR+GR  R  R 
Sbjct  332  SRLETTVKFTQAQYACLFATDIVARGLDFPAIDWVVQVDCPEDAVTYVHRVGRAARFGRQ  391

Query  613  GLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWY  653
            G ++ ++   +E+       +         +K+    +I  
Sbjct  392  GKSLLMLLPSEEEGMLKRLENNKIEPKFMNIKQKSKKSIRP  432


 Score = 94.0 bits (232),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 52/107 (49%), Gaps = 5/107 (5%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++ FS++ +  E  + + E  ++  TDIQ ++IP+ L G D++  A TGSGKT AF IPV
Sbjct  46   ISQFSDLPITQETLRGLNESSFMSLTDIQKKTIPIALKGEDLMGTARTGSGKTLAFLIPV  105

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            ++ +      + +G           S   +  +  ++  +     + 
Sbjct  106  VESLIRNKITEHDG-----LAALIVSPTRELAVQTFEVLTKIGKYNT  147


>sp|Q6AZV7|DDX55_XENLA ATP-dependent RNA helicase DDX55 OS=Xenopus 
laevis OX=8355 GN=ddx55 PE=2 SV=1
Length=594

 Score = 247 bits (630),  Expect = 2e-71, Method: Composition-based stats.
 Identities = 89/393 (23%), Positives = 160/393 (41%), Gaps = 59/393 (15%)

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-  337
            + K   N   ALI+ P+RELA Q    +  F K+   P+  ++L+IGG    D +   + 
Sbjct  75   EEKLKKNQVGALIITPTRELAVQIDEVLSCFTKHF--PQFSQILLIGGSNPVDDVRKFKE  132

Query  338  NGVDIVVGTPGRLDDLVSTGK------LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQI  391
            +G +I+V TPGRL+D+           + +  +  L+LDEAD LL  G+   IN +   +
Sbjct  133  HGGNIIVATPGRLEDMFRRQADGLDLVICVKTLDVLILDEADRLLDMGFEASINTILGFL  192

Query  392  PQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPK  451
            P      K+ +  + SAT  + +++ L    +  P  + +K +     +           
Sbjct  193  P------KQRRTGLFSAT-QTQELENLVRAGLRNPVRIAVKEKGVAATSTQ---------  236

Query  452  TDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAII  511
              +   RL   ++                            K    +  +++ K ++ ++
Sbjct  237  --KTPIRLQNYYMICKADE----------------------KFNKLIAFLQKRKQEKHLV  272

Query  512  FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLIC  571
            F  T    +   +         +        +C+HG  K H+R +    F+K +   L+C
Sbjct  273  FFSTCACVEYYGKAL-------EMLLKPVKVMCIHGKMK-HKRNRIFTEFRKINSGILVC  324

Query  572  TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVC  631
            TDV ARGIDIH V +V+    P     +VHR GR  R    G A+  +   +E     + 
Sbjct  325  TDVMARGIDIHEVNWVVQYDPPSSASAFVHRCGRTARIGHHGSALVFLLPMEESYVSFL-  383

Query  632  SSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEE  664
             S  + C    + E         +++ ++E + 
Sbjct  384  -SINQKCPLQEMTELIISVDLLPKLKAMAETDR  415


 Score = 86.7 bits (213),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 50/104 (48%), Gaps = 6/104 (6%)

Query  3    AFSEMG--VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
             +  +   +   I + +EE+ +   T +Q+ +IPL +   D+   A TGSGKT AF IP+
Sbjct  8    TWDSLPQKLNGSIRRTLEELKFTHMTPVQSATIPLFMNNKDIAAEAITGSGKTLAFVIPL  67

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            ++I+ +  +  ++ + G   I    +   +  +   +  S F  
Sbjct  68   LEILLKREEKLKKNQVGALII----TPTRELAVQIDEVLSCFTK  107


>sp|Q5BCI0|MAK5_EMENI ATP-dependent RNA helicase mak5 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=mak5 PE=3 SV=1
Length=770

 Score = 251 bits (640),  Expect = 3e-71, Method: Composition-based stats.
 Identities = 103/502 (21%), Positives = 185/502 (37%), Gaps = 72/502 (14%)

Query  212  LGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKA--PDGYIVKS  269
            LGL+ E    +          ++ + +           P  DG   + KA    G  +  
Sbjct  202  LGLSPETLTSLSKLKFSTPTSVQKSCIP----------PILDGHDVIGKASTGSGKTLAF  251

Query  270  ---------QHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRE  320
                     +      +   +     P ALI+ P+RELA Q   +I            R 
Sbjct  252  GLPILEHYLERERRKTIDSEEEKEKIPIALILSPTRELAHQLQKHIYGLISNAPGVNART  311

Query  321  LLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLS  377
             L+ GG++ + Q  +LE   DIV+GTPGR+ +++ TG+     +  ++FLV+DEAD LLS
Sbjct  312  ALLTGGLSVQKQQRLLET-ADIVIGTPGRVWEVLRTGQGLIRRMQGIKFLVIDEADRLLS  370

Query  378  QGYSDFINRMHNQIPQVTSDGK----------------RLQVIVCSATLHSFDVKKLSEK  421
            +G+   +  + + + +V   G                   Q +V SAT H    +KL+ K
Sbjct  371  EGHFKEVEDILSSLDRVEDGGPPDEEDDSSEENVVPGVERQTLVFSATFHRDLQQKLAGK  430

Query  422  IMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANS  481
                                   ++      + L ++L     +   +     ++     
Sbjct  431  G----------------KWTGGDIMNKKESMEYLLQKLNFREEKPKFIDVNPVSQMAEGL  474

Query  482  PEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFS  541
             E   E   + K  Y    +  H   + ++F  +      + Q              Q  
Sbjct  475  KEGIVECPAMEKDLYLYTLLLYHPKHRTLVFTNSISAVRRITQLLQTL---------QLP  525

Query  542  CVCLHGDRKPHERKQNLERFKKGDVR---FLICTDVAARGIDIHGVPYVINVTLPDEKQN  598
             + LH       R +++ERF          L+ TDVAARG+DI G+ +VI+   P     
Sbjct  526  ALALHSSMAQKARLRSVERFSSSTANPGTILVATDVAARGLDIKGIDFVIHYHAPRTADT  585

Query  599  YVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
            YVHR GR  RA   G ++ + + E+      + +       N +        +   + ++
Sbjct  586  YVHRSGRTARAGASGKSVIICSPEEMVGVVRLAAKVHANMANGKKLPLESLEL---DRRI  642

Query  659  LSEIEEHLNCTISQVEPDIKVP  680
            +S + + +       + +I   
Sbjct  643  VSRVRQRVVLAARITDSNIAKE  664


 Score = 113 bits (283),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 39/157 (25%), Positives = 68/157 (43%), Gaps = 11/157 (7%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++A+  +G+ PE   ++ ++ +  PT +Q   IP IL G DV+  A TGSGKT AF +P+
Sbjct  196  ISAWEPLGLSPETLTSLSKLKFSTPTSVQKSCIPPILDGHDVIGKASTGSGKTLAFGLPI  255

Query  61   IQIVYETLKDQQ---EGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVK  117
            ++   E  + +    E +K K  I    S   +               + G+  ++  + 
Sbjct  256  LEHYLERERRKTIDSEEEKEKIPIALILSPTRELAHQLQKHIYGLISNAPGVNARTALLT  315

Query  118  EWHGCRA------TKGLMKGK--HYYEVSCHDQGLCR  146
                 +       T  ++ G     +EV    QGL R
Sbjct  316  GGLSVQKQQRLLETADIVIGTPGRVWEVLRTGQGLIR  352


>sp|P0CQ90|MAK5_CRYNJ ATP-dependent RNA helicase MAK5 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=MAK5 PE=3 SV=1
Length=772

 Score = 251 bits (640),  Expect = 3e-71, Method: Composition-based stats.
 Identities = 111/481 (23%), Positives = 187/481 (39%), Gaps = 79/481 (16%)

Query  236  AELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP-----------  284
              LK +F    F  P      A+     G  V       +  T    LP           
Sbjct  181  PSLKRSFLASSFTAPTAIQSRAIPAGITGRDVVGVAETGSGKTLAYSLPILHYLLGQRKS  240

Query  285  -----NAPKALIVEPSRELAEQTLNNIKQFKKYI----------DNPKLRELLIIGGVAA  329
                     AL++ P+RELA Q ++++    K+             P++    ++GG++A
Sbjct  241  KAGIKRPLSALVLCPTRELALQVMDHLNALLKHALATPDGEKPQGPPRVSVGSVVGGLSA  300

Query  330  RDQLSVLENGVDIVVGTPGRLDDLVSTG---KLNLSQVRFLVLDEADGLLSQGYSDFINR  386
            + Q  +LE G D++V TPGRL DL+        ++  +RFLV+DEAD ++  G+   +  
Sbjct  301  QKQKRILERGCDVIVATPGRLWDLIKADDELATSVRTLRFLVIDEADRMIENGHFAELES  360

Query  387  MHNQ----------------------IPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH  424
            +                         + + ++  + +Q  V SATL     K L  +   
Sbjct  361  IVKLTQRSTAQQGPDDDDPVFQAMATLFEESTAREDMQTFVFSATLSKDLQKNLKRRSRS  420

Query  425  FPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEM  484
            +      KG+     T+             L E+L       + +         ++  E 
Sbjct  421  W------KGKGKRSSTLE-----------DLVEKLDFRDENPEVIDLSPEGGVVSSLRES  463

Query  485  WSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC  544
              E+ K  K  Y    +  +   ++I+F  +             +   P     Q     
Sbjct  464  MIESTKDDKDLYLYYFLLRYP-GRSIVFVNSIDS---------IRRLLPLFTLLQLPVFP  513

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            LH   +  +R +NL+RFK      LI TDVAARG+DI  V +V++  LP     Y+HR G
Sbjct  514  LHSHLQQKQRLKNLDRFKSNPKGILIATDVAARGLDIPQVDHVVHFNLPRTADAYIHRSG  573

Query  605  RVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLK-EDGGCTIWYNEMQLLSEIE  663
            R  RA+  G A+ LV+ +++ V   +  S  +      L  E G        +++ +EIE
Sbjct  574  RTARAQNEGFALQLVSPDEKSVQRALMKSLERTHELPDLPIEAGFLPSLRERLRVATEIE  633

Query  664  E  664
            +
Sbjct  634  K  634


 Score = 96.7 bits (239),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 2/102 (2%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  +S + + P + ++     +  PT IQ+ +IP  + G DV+  AETGSGKT A+S+P+
Sbjct  171  LPEWSSISLHPSLKRSFLASSFTAPTAIQSRAIPAGITGRDVVGVAETGSGKTLAYSLPI  230

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            +  +    K +   K+  + +        +  +   D  +A 
Sbjct  231  LHYLLGQRKSKAGIKRPLSAL--VLCPTRELALQVMDHLNAL  270


>sp|P0C2N7|DRS1_CHAGB ATP-dependent RNA helicase DRS1 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=DRS1 PE=3 SV=1
Length=795

 Score = 251 bits (640),  Expect = 4e-71, Method: Composition-based stats.
 Identities = 99/477 (21%), Positives = 177/477 (37%), Gaps = 81/477 (17%)

Query  228  FPACVLKNAELKFNFGEEEFKFPPKDGFVALSKA------------PDGYIVKSQHSGNA  275
            F    L    L+       F  P       +  A              G           
Sbjct  278  FQGMSLSRPILR-GLTSVGFTKPTPIQAKTIPIALMGKDVVGGAVTGSGKTAAFVVPILE  336

Query  276  QVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
            ++          + +++ P+RELA Q  +   +   + D   ++  L +GG++ + Q   
Sbjct  337  RLLYRPKKVPTTRVVVLTPTRELAIQCHSVATKLASHTD---IKFCLAVGGLSLKVQEGE  393

Query  336  LENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV  394
            L    D+V+ TPGR +D + ++    +  V  LVLDEAD +L  G++D +N +   +P  
Sbjct  394  LRLRPDVVIATPGRFIDHMRNSASFAVETVEILVLDEADRMLEDGFADELNEILTTLP--  451

Query  395  TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDR  454
                K  Q ++ SAT+ S  V KL    ++ P  + +  +     T+    V + P  + 
Sbjct  452  ----KSRQTMLFSATMTST-VDKLIRVGLNKPARIMVDSQKQTAVTLAQEFVRLRPGREE  506

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
                    +++ D VH   +    A            L G +  RA  +H+   A     
Sbjct  507  KRMGYLGPYLQ-DPVHRTSHYLLQAEEDCSPDPDHLRLAGAFEHRAPWKHEPGSA-----  560

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
                                                          F+ G V +L+ TD+
Sbjct  561  ----------------------------------------------FRDGKVNYLLATDL  574

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS-  633
            A+RG+DI G+  VIN   P   + YVHR+GR  RA R G+AI+L A    KV      + 
Sbjct  575  ASRGLDIKGIDTVINYEAPQSLEIYVHRVGRTARAGRSGVAITLAAEPDRKVVKAAVRAG  634

Query  634  -RGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVT  689
                    +R+ +      W ++   + E+++ ++  + + + + ++   E   K  
Sbjct  635  KAQGAKIISRVIDAADADKWQDQ---IDEMDDEIDEILQEEKEEKQLAQIEMQVKKG  688


 Score = 109 bits (273),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 53/107 (50%), Gaps = 6/107 (6%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +++F  M +   I + +  + +  PT IQA++IP+ L G DV+  A TGSGKT AF +P+
Sbjct  275  LSSFQGMSLSRPILRGLTSVGFTKPTPIQAKTIPIALMGKDVVGGAVTGSGKTAAFVVPI  334

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            ++ +    K      K  TT     +   +  +  +   +  A  +D
Sbjct  335  LERLLYRPK------KVPTTRVVVLTPTRELAIQCHSVATKLASHTD  375


>sp|Q2UE66|DBP7_ASPOR ATP-dependent RNA helicase dbp7 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp7 
PE=3 SV=1
Length=760

 Score = 250 bits (638),  Expect = 4e-71, Method: Composition-based stats.
 Identities = 100/466 (21%), Positives = 176/466 (38%), Gaps = 38/466 (8%)

Query  198  IDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDG---  254
            +  G   F+  G    LA  +   ++   L     ++ A +     E+   F   +    
Sbjct  132  LIDGLDTFTNLGLSPSLAAHLLTKLE---LKAPTGIQKASMSQLLKEDSDAFIQAETGSG  188

Query  255  -----FVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQF  309
                  + L +           S N++        +   A+++ P+REL +Q    ++  
Sbjct  189  KTLAYLLPLVQRIMTVSNPKNMSTNSKGEPIVHRDSGLFAIVLAPTRELCKQISVVLESL  248

Query  310  KKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLV  368
             +      +    +IGG   + + + L  G++I+V TPGRL D + +T  L++S VR+LV
Sbjct  249  LRC--AHWIVAGTVIGGEKKKSEKARLRKGLNILVATPGRLADHLENTQALDVSNVRWLV  306

Query  369  LDEADGLLSQGYSDFINRMHNQIPQVTSDGK------RLQVIVCSATLHSFDVKKLSEKI  422
            LDE D L+  G+   +  +  ++       +      +   I+CSATL   +V+KL E  
Sbjct  307  LDEGDRLMELGFEKELQGIIQKLDARQRPSRIPGIPTKRTTILCSATL-KMNVQKLGEIS  365

Query  423  MHFPTWVDLKGEDS-------------VPDTVHHVVVPVNPKTD--RLWERLGKSHIRTD  467
            +     +     D              VP  +      V  K     L   L ++ +R  
Sbjct  366  LKDAVHIKADPADEDGETKRKDDDGFRVPAQLKQSYAIVAAKLRLVTLTAYLKRTFMRKG  425

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
             V         A+S +   E     K +Y   +  E +  +      +K   +      I
Sbjct  426  SVMKAIVFVSCADSVDFHFEVFSRRK-QYRDESEDEDEEKEDDDEDNSKTKSEASPHGTI  484

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF-KKGDVRFLICTDVAARGIDIHGVPY  586
                      +      LHG    H R   L  F ++ +   L+CTDVA+RG+D+  V  
Sbjct  485  APAVAFSNPSNPVKLHKLHGSLPQHVRTATLNAFSREREPSVLVCTDVASRGLDLPNVDL  544

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
            VI         ++ HRIGR  R  R G A+  +    E+ +  +  
Sbjct  545  VIEYDPAFSADDHTHRIGRTARLGRDGRALIFLMPGCEENYVEILK  590


 Score = 68.2 bits (165),  Expect = 2e-10, Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 4/83 (5%)

Query  3    AFSEMGVMPEIA-QAVEEMDWLLPTDIQAESIPLILGG-GDVLMAAETGSGKTGAFSIPV  60
             F+ +G+ P +A   + +++   PT IQ  S+  +L    D  + AETGSGKT A+ +P+
Sbjct  138  TFTNLGLSPSLAAHLLTKLELKAPTGIQKASMSQLLKEDSDAFIQAETGSGKTLAYLLPL  197

Query  61   IQIVY--ETLKDQQEGKKGKTTI  81
            +Q +      K+     KG+  +
Sbjct  198  VQRIMTVSNPKNMSTNSKGEPIV  220


>sp|P0CQ91|MAK5_CRYNB ATP-dependent RNA helicase MAK5 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=MAK5 PE=3 SV=1
Length=772

 Score = 249 bits (636),  Expect = 9e-71, Method: Composition-based stats.
 Identities = 111/481 (23%), Positives = 187/481 (39%), Gaps = 79/481 (16%)

Query  236  AELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP-----------  284
              LK +F    F  P      A+     G  V       +  T    LP           
Sbjct  181  PSLKRSFLASSFTAPTAIQSRAIPAGITGRDVVGVAETGSGKTLAYSLPILHYLLGQRKS  240

Query  285  -----NAPKALIVEPSRELAEQTLNNIKQFKKYI----------DNPKLRELLIIGGVAA  329
                     AL++ P+RELA Q ++++    K+             P++    ++GG++A
Sbjct  241  KAGIKRPLSALVLCPTRELALQVMDHLNALLKHALATPDGEKPQGPPRVSVGSVVGGLSA  300

Query  330  RDQLSVLENGVDIVVGTPGRLDDLVSTG---KLNLSQVRFLVLDEADGLLSQGYSDFINR  386
            + Q  +LE G D++V TPGRL DL+        ++  +RFLV+DEAD ++  G+   +  
Sbjct  301  QKQKRILERGCDVIVATPGRLWDLIKADDELATSVRTLRFLVIDEADRMIENGHFAELES  360

Query  387  MHNQ----------------------IPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH  424
            +                         + + ++  + +Q  V SATL     K L  +   
Sbjct  361  IVKLTQRSTAQQGPDDDDPVFQAMATLFEESTAREDMQTFVFSATLSKDLQKNLKRRSRS  420

Query  425  FPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEM  484
            +      KG+     T+             L E+L       + +         ++  E 
Sbjct  421  W------KGKGKRSSTLE-----------DLVEKLDFRDENPEVIDLSPEGGVVSSLRES  463

Query  485  WSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC  544
              E+ K  K  Y    +  +   ++I+F  +             +   P     Q     
Sbjct  464  MIESTKDDKDLYLYYFLLRYP-GRSIVFVNSIDS---------IRRLLPLLTLLQLPVFP  513

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            LH   +  +R +NL+RFK      LI TDVAARG+DI  V +V++  LP     Y+HR G
Sbjct  514  LHSHLQQKQRLKNLDRFKSNPKGILIATDVAARGLDIPQVDHVVHFNLPRTADAYIHRSG  573

Query  605  RVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLK-EDGGCTIWYNEMQLLSEIE  663
            R  RA+  G A+ LV+ +++ V   +  S  +      L  E G        +++ +EIE
Sbjct  574  RTARAQNEGFALQLVSPDEKSVQRALMKSLERTHELPDLPIEAGFLPSLRERLRVATEIE  633

Query  664  E  664
            +
Sbjct  634  K  634


 Score = 96.7 bits (239),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 2/102 (2%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  +S + + P + ++     +  PT IQ+ +IP  + G DV+  AETGSGKT A+S+P+
Sbjct  171  LPEWSSISLHPSLKRSFLASSFTAPTAIQSRAIPAGITGRDVVGVAETGSGKTLAYSLPI  230

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            +  +    K +   K+  + +        +  +   D  +A 
Sbjct  231  LHYLLGQRKSKAGIKRPLSAL--VLCPTRELALQVMDHLNAL  270


>sp|Q86IZ9|DDX52_DICDI Probable ATP-dependent RNA helicase ddx52 
OS=Dictyostelium discoideum OX=44689 GN=ddx52 PE=3 SV=1
Length=668

 Score = 246 bits (629),  Expect = 1e-70, Method: Composition-based stats.
 Identities = 89/443 (20%), Positives = 174/443 (39%), Gaps = 67/443 (15%)

Query  252  KDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKK  311
            +   VA++    G            +   +      +++I+ P+RELA+Q   N +   K
Sbjct  236  EREVVAIAPTGSGKTASFSIPILQALY--EPKKEGFRSVIIAPTRELAQQIYRNFRLLSK  293

Query  312  YIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDE  371
                   R  ++   +  +     L    DI++ TP RL  L+    L+L++V +LV DE
Sbjct  294  ---GKPFRICVLSKNLHNQSTNENLIKNYDILITTPLRLVYLIKENLLSLNKVEYLVFDE  350

Query  372  ADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL  431
            AD L  + + + ++ +            +L++ + SAT++   V++L   IM  P  + +
Sbjct  351  ADKLFDKNFQEQVDIVV-----TACQNPKLKICLFSATMN-QQVEELGHSIMKNPIKIII  404

Query  432  KGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
              +++   TV   ++ V  +  +L                                    
Sbjct  405  GEQNAAAITVDQKLIYVGKEEGKLLA----------------------------------  430

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
                   + I++      +IF ++K    +L Q  I  G          +   +H +R  
Sbjct  431  -----VRQLIQKGLEPPILIFTQSKERAHDLFQELIFDG---------INVDVIHSERTQ  476

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
             +R   +++F+ G +  LICT++ ARG+D  GV +VIN   P    +Y+HRIGR GRA R
Sbjct  477  FQRDTIVKKFRMGKIWVLICTELMARGMDFKGVNFVINFDFPHTLASYIHRIGRTGRAGR  536

Query  612  MGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTIS  671
             G+A +L       +   +  +  +   +           W   +++  + ++       
Sbjct  537  PGVAYTLYTDADTPMLPTIVHAMKQSGSHVP--------DWMLNLKVQGKKKQQYRLKGV  588

Query  672  QVEPDIKVPVDEFDGKVTYGQKR  694
            + E    +P+ E        +K 
Sbjct  589  ERESFSTIPLSERTSSKFKLRKN  611


 Score = 88.3 bits (217),  Expect = 9e-17, Method: Composition-based stats.
 Identities = 28/97 (29%), Positives = 50/97 (52%), Gaps = 4/97 (4%)

Query  1    MAAFSEM----GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
            M  FS++     V   +   + E+ +  P+ IQ + IP++L   +V+  A TGSGKT +F
Sbjct  194  MTEFSQLENRFKVRKYLLNNINEIGYKEPSPIQMQVIPILLKEREVVAIAPTGSGKTASF  253

Query  57   SIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQM  93
            SIP++Q +YE  K+         T +    +   +++
Sbjct  254  SIPILQALYEPKKEGFRSVIIAPTRELAQQIYRNFRL  290


>sp|A7TJS7|SPB4_VANPO ATP-dependent rRNA helicase SPB4 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 
21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=SPB4 PE=3 SV=1
Length=607

 Score = 245 bits (625),  Expect = 1e-70, Method: Composition-based stats.
 Identities = 89/415 (21%), Positives = 152/415 (37%), Gaps = 55/415 (13%)

Query  276  QVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI--DNPKLRELLIIG---GVAAR  330
            +   TK       +LIV P++ELA+Q  +  + F ++   +   +R  L++G        
Sbjct  73   EANTTKMKKGHFHSLIVSPTKELAKQIHSVFESFLEHYPENLYPIRSQLLVGTNVKTVRD  132

Query  331  DQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ  390
            D    +EN   I++GTPGR+ D +    +  S    ++LDEAD LL   +   +  + N 
Sbjct  133  DVSDFMENKPQILIGTPGRILDFLKIPSVKTSMCSMVILDEADRLLDVSFLKDMENIMNI  192

Query  391  IPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNP  450
            +P      K+ +  + SAT+ S     + +  +  P  V +  +   P ++      V  
Sbjct  193  LP------KQRRTGLFSATITSAG-DNIFKTGLRNPVKVTVNSKSQAPSSLKIDCAVVET  245

Query  451  KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAI  510
                                                      K E  +  I  +K  + I
Sbjct  246  DK----------------------------------------KLEQVISIINNYKFKKCI  265

Query  511  IFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR-FL  569
             +  T         +          K  +     LHG  +   R + LE F +      L
Sbjct  266  AYFPTCHSVTYFYSFMQYLLKKGIIKE-EIQIYSLHGKLQTSARIKTLETFTETISNAVL  324

Query  570  ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            + TDVAARGIDI  V  V+ +  P + + ++HR GR GRA ++G AI+ +   +E+ +  
Sbjct  325  LTTDVAARGIDIPDVDLVLQLDPPTDPEVFLHRCGRTGRANKLGKAITFLTPGREEDYIP  384

Query  630  VCSSRGKGCYNTRLKEDGGCTIWYN-EMQLLSEIEEHLNCTISQVEPDIKVPVDE  683
                +        L        +Y      L E    L+  +      IK     
Sbjct  385  FMEVKNINLEEISLDIVNLPDNFYEIFKDWLLEDRARLDQAVKSYVAYIKTYSKH  439


 Score = 87.5 bits (215),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 27/101 (27%), Positives = 48/101 (48%), Gaps = 3/101 (3%)

Query  4    FSEM--GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + ++   + P I  AV+ M +   T +QA +IPL     DV++ + TGSGKT +F IP+ 
Sbjct  7    WDDLEYPIQPWIRSAVDVMGFENMTPVQAATIPLFARNKDVVVDSVTGSGKTVSFVIPIF  66

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            + + +   +  + KKG        S   +     +    +F
Sbjct  67   EKIVQEEANTTKMKKGHF-HSLIVSPTKELAKQIHSVFESF  106


>sp|Q9Y2R4|DDX52_HUMAN Probable ATP-dependent RNA helicase DDX52 
OS=Homo sapiens OX=9606 GN=DDX52 PE=1 SV=4
Length=599

 Score = 245 bits (624),  Expect = 2e-70, Method: Composition-based stats.
 Identities = 102/459 (22%), Positives = 170/459 (37%), Gaps = 70/459 (15%)

Query  193  GCYLDIDKGHVKFSKN-------GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEE  245
            G   ++ K  + F +N       G DL         +  +    + +L+N  L   F   
Sbjct  130  GKLENLRKEKINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQN-ILDAGFQMP  188

Query  246  EFKFPPKD-----GFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE  300
                         G   L+ AP G       S    +   +      +ALI+ P+RELA 
Sbjct  189  TPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELAS  248

Query  301  QTLNNIKQFKKYIDNPKLRELLI-IGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGK-  358
            Q    + +     +    R  +I    VAA+          DI+V TP RL  L+     
Sbjct  249  QIHRELIKIS---EGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPP  305

Query  359  -LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKK  417
             ++L+ V +LV+DE+D L   G + F +++ +     TS   R    + SAT   +DV++
Sbjct  306  GIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRR--AMFSATFA-YDVEQ  362

Query  418  LSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRP  477
              +  +     V +   +S  +TV   ++ V  +T +L                      
Sbjct  363  WCKLNLDNVISVSIGARNSAVETVEQELLFVGSETGKLLA--------------------  402

Query  478  GANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKG  537
                                   +K+      ++F ++      L    I +G       
Sbjct  403  -------------------VRELVKKGFNPPVLVFVQSIERAKELFHELIYEG-------  436

Query  538  HQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQ  597
               +   +H +R   +R   +  F+ G +  LICT + ARGID  GV  VIN   P    
Sbjct  437  --INVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSV  494

Query  598  NYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGK  636
             Y+HRIGR GRA   G AI+    + + +   V +   +
Sbjct  495  EYIHRIGRTGRAGNKGKAITFFTEDDKPLLRSVANVIQQ  533


 Score = 94.8 bits (234),  Expect = 7e-19, Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 54/111 (49%), Gaps = 12/111 (11%)

Query  1    MAAFSEMG----VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
            +A F ++     +   + Q + +  + +PT IQ ++IP++L G ++L +A TGSGKT AF
Sbjct  160  IATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAF  219

Query  57   SIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            SIP++  +      +Q   KG   +    S   +     +      + G+ 
Sbjct  220  SIPILMQL------KQPANKGFRAL--IISPTRELASQIHRELIKISEGTG  262


>sp|Q5VRY0|RH39_ORYSJ DEAD-box ATP-dependent RNA helicase 39 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os01g0184500 PE=2 
SV=1
Length=625

 Score = 245 bits (625),  Expect = 2e-70, Method: Composition-based stats.
 Identities = 96/425 (23%), Positives = 159/425 (37%), Gaps = 73/425 (17%)

Query  235  NAELKFNFGEEEFKFPPKDGFVALSKAPDG---YIVKSQHSGNAQVTQTKFL--------  283
              E+    GE     P +   V +     G    +     SG         +        
Sbjct  118  GEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLVQLLRRDEA  177

Query  284  -------PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL  336
                   P  P+A+++ P+REL EQ     K    +    + R  ++ GG   R Q   L
Sbjct  178  MLGMSMKPRRPRAVVLCPTRELTEQVFRVAKSISHHA---RFRSTMVSGGSRIRPQEDSL  234

Query  337  ENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ--V  394
               VD+VVGTPGR+ D +  G +    +++LVLDEAD +  QG+   I +    +     
Sbjct  235  NMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMFDQGFGPDIRKFLAPLKNRAA  294

Query  395  TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDR  454
                +  Q ++ +AT+    V+KL ++       +          T  H  + ++   ++
Sbjct  295  KPGDQGFQTVLVTATMTKA-VQKLIDEEFEGIVHLRTTTFQKRVATARHDFIKLSGSENK  353

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
            L   L                                             K ++ ++FC 
Sbjct  354  LEALLQVLEPSLA-------------------------------------KGNKVMVFCN  376

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK--GDVRFLICT  572
            T      ++ +  +         +Q S V  HG+    ER +NL +F+   GD   L+CT
Sbjct  377  TLNSSRAVDHFLTE---------NQISTVNYHGEVPAEERVENLNKFRNEEGDCPTLVCT  427

Query  573  DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
            D+AARG+D+  V +VI    P    +Y+HR GR  R    G   SLVA +   +   +  
Sbjct  428  DLAARGLDL-DVDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVTSLVAKKDVTLATRIEE  486

Query  633  SRGKG  637
            +  K 
Sbjct  487  AMKKN  491


 Score = 87.1 bits (214),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 46/96 (48%), Gaps = 0/96 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F E+G+  E+  A+ EM    PT+IQ   +P +L G  V++ + TGSGKT A+ +P+
Sbjct  109  VDSFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPL  168

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
            +Q++           K +           +     +
Sbjct  169  VQLLRRDEAMLGMSMKPRRPRAVVLCPTRELTEQVF  204


>sp|Q99PT0|DDX52_RAT Probable ATP-dependent RNA helicase DDX52 
OS=Rattus norvegicus OX=10116 GN=Ddx52 PE=2 SV=1
Length=598

 Score = 244 bits (623),  Expect = 3e-70, Method: Composition-based stats.
 Identities = 90/443 (20%), Positives = 165/443 (37%), Gaps = 67/443 (15%)

Query  197  DIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFV  256
            D+      F +  ++  ++  +  ++ +        ++   +               G  
Sbjct  156  DLPDPIATFQQLDQEYKISPRLLQNILDAGFQVPTPIQMQAIPVML----------HGRE  205

Query  257  ALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNP  316
             L+ AP G       S    +   +      +AL++ P+RELA Q    + +     +  
Sbjct  206  LLASAPTGSGKTLAFSIPILMQLKQPTNKGFRALVISPTRELASQIHRELIKIS---EGT  262

Query  317  KLRELLI-IGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGK--LNLSQVRFLVLDEAD  373
              R  +I    +AA+          DI+V TP RL  L+      ++L+ V +LV+DE+D
Sbjct  263  GFRIHMIHKAAIAAKKFGPKSSKKFDILVTTPNRLIYLLKQEPPGIDLTSVEWLVVDESD  322

Query  374  GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG  433
             L   G + F +++ +     TS   R    + SAT   +DV++  +  +     V +  
Sbjct  323  KLFEDGKTGFRDQLASIFLACTSPKVRR--AMFSATFA-YDVEQWCKLNLDNIVSVSIGA  379

Query  434  EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK  493
             +S  +TV   ++ V  +T +L                                      
Sbjct  380  RNSAVETVEQELLFVGSETGKLLA------------------------------------  403

Query  494  GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
                   +K+      ++F ++      L    I +G          +   +H +R   +
Sbjct  404  ---MRELVKKGFNPPVLVFVQSIERAKELFHELIYEG---------INVDVIHAERTQQQ  451

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
            R   +  F+ G +  LICT + ARGID  GV  VIN   P     Y+HRIGR GRA   G
Sbjct  452  RDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRG  511

Query  614  LAISLVATEKEKVWYHVCSSRGK  636
             A++    + + +   V +   +
Sbjct  512  KAVTFFTEDDKPLLRSVANVIQQ  534


 Score = 97.9 bits (242),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 55/111 (50%), Gaps = 12/111 (11%)

Query  1    MAAFSEMG----VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
            +A F ++     + P + Q + +  + +PT IQ ++IP++L G ++L +A TGSGKT AF
Sbjct  161  IATFQQLDQEYKISPRLLQNILDAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAF  220

Query  57   SIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            SIP++  +      +Q   KG   +    S   +     +      + G+ 
Sbjct  221  SIPILMQL------KQPTNKGFRAL--VISPTRELASQIHRELIKISEGTG  263


>sp|Q6CK32|DBP7_KLULA ATP-dependent RNA helicase DBP7 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP7 PE=3 SV=1
Length=740

 Score = 247 bits (631),  Expect = 3e-70, Method: Composition-based stats.
 Identities = 100/478 (21%), Positives = 174/478 (36%), Gaps = 48/478 (10%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVAL--------  258
             N  D                F +  + +  +     + +   P K   + +        
Sbjct  130  SNAHDEKAEVTYSNAPLVGDTFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQN  189

Query  259  -----SKAPDGYIVKSQHSGNAQVT---QTKFLPNAPKALIVEPSRELAEQTLNNIKQFK  310
                 ++   G  +         +    Q     +   AL+V P+RELA Q      +  
Sbjct  190  DLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELA  249

Query  311  KYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQV----RF  366
            +      L   L+IGG   + + + L  G + ++GTPGR+ D +   K+   Q+    R+
Sbjct  250  QCC--HFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRY  307

Query  367  LVLDEADGLLSQGYSDFINRMHNQIP-------QVTSDGKRLQVIVCSATLHSFDVKKLS  419
            +VLDE D L+  G+ + +  + N I        Q     KR+  ++CSAT+   +V KL 
Sbjct  308  VVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATV-KGNVTKLG  366

Query  420  EKIMHFPTWVDLKGEDS----VPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNT  475
               +     +    + +    VPD +   +V V PK   +   L  S       H K+ +
Sbjct  367  NVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVT--LAGSLTTITQKHYKEGS  424

Query  476  RPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDK  535
            +       ++      +   Y V +       + ++          L +         D 
Sbjct  425  KSDVTRTIVFLSCSDSVDFHYEVFS-SHDGNHRGLV----GDTARLLTKGNSILPCFNDT  479

Query  536  KGHQFSCVCLHGDRKPHERKQNLERF------KKGDVRFLICTDVAARGIDIHGVPYVIN  589
                  C  LHG      R   L+ F       KG    L CTDVA+RG+D+  V  VI 
Sbjct  480  DDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIE  539

Query  590  VTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH-VCSSRGKGCYNTRLKED  646
            +  P   ++++HRIGR  RA   G ++  +   +E+ +   +     KG       E 
Sbjct  540  MDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMDYIKPYHPKGWKLLTYDEQ  597


 Score = 75.2 bits (183),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 40/103 (39%), Gaps = 5/103 (5%)

Query  3    AFSEMGVMPEIAQAVE-EMDWLLPTDIQAESIPLILGGG-DVLMAAETGSGKTGAFSIPV  60
             F   G+   +   +  +M    PT IQ   IP  L    D+ + A+TGSGKT AF +P+
Sbjct  150  TFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPI  209

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
             Q +    ++     +         +   +     Y   S  A
Sbjct  210  FQSILSLGQNIT---RQSGCFALVVTPTRELANQIYQVTSELA  249


>sp|A1CTL8|MAK5_ASPCL ATP-dependent RNA helicase mak5 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=mak5 PE=3 SV=1
Length=774

 Score = 248 bits (633),  Expect = 3e-70, Method: Composition-based stats.
 Identities = 95/440 (22%), Positives = 174/440 (40%), Gaps = 51/440 (12%)

Query  263  DGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
            + Y+ K++      + +     + P ALI+ P+RELA Q   +I +          R  L
Sbjct  258  EHYLEKNRDGHGDIIGKKDKKDSTPIALILSPTRELAHQLAKHIGELVTQAPGVNARIAL  317

Query  323  IIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQG  379
            + GG++ + Q  +L  G DIV+GTPGR+ +++STG+     + +++FLV+DEAD LLS+G
Sbjct  318  LTGGLSVQKQQRLLA-GADIVIGTPGRVWEIMSTGQGLIRKMQKIKFLVVDEADRLLSEG  376

Query  380  YSDFINRMHNQIPQV----------------TSDGKRLQVIVCSATLHSFDVKKLSEKIM  423
            +   +  +   + +V                +      Q +V SAT H    +KL+ K  
Sbjct  377  HFKEVEEIIGALDRVEDGDVLDEEDEAPEEESDPRSERQTLVFSATFHRDLQQKLAGKG-  435

Query  424  HFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPE  483
                                 ++      D L ++L     +   +     ++   N  E
Sbjct  436  ---------------KWTGGDIMNKKESMDYLLQKLNFREEKPKFIDTNPVSQMAENLKE  480

Query  484  MWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCV  543
               E   + K  +    +  H   + ++F  +                    +  Q   +
Sbjct  481  GIVECGAMEKDLFLYTLLLYHPKHRTLVFTNSISAVRR---------LAQLLQALQLPAL  531

Query  544  CLHGDRKPHERKQNLERFKKGDVR---FLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600
             LH       R +++ERF          LI TDVAARG+DI G+  VI+   P     YV
Sbjct  532  ALHSSMAQKARLRSVERFSSPTANPGTILIATDVAARGLDIKGIDLVIHYHAPRTADTYV  591

Query  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660
            HR GR  RA   G ++ +   ++      + +       N +        +   + +++ 
Sbjct  592  HRSGRTARAGASGKSVIICGPDEMVGVVRLAAKVHANMANGKRLPLESLEL---DRRVVG  648

Query  661  EIEEHLNCTISQVEPDIKVP  680
             ++  ++     V+ +I   
Sbjct  649  RVKPRVSLASRIVDANIAKE  668


 Score = 112 bits (279),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 67/160 (42%), Gaps = 14/160 (9%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++A+  + +  E+   + +M +  PT +QA  IP IL G DV+  A TGSGKT AF IP+
Sbjct  197  VSAWDALNLSTELLTGISKMKFTSPTAVQAACIPHILDGHDVVGKASTGSGKTLAFGIPI  256

Query  61   IQIVYETLKD------QQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSR  114
            ++   E  +D       ++ KK  T I    S   +               + G+  +  
Sbjct  257  LEHYLEKNRDGHGDIIGKKDKKDSTPIALILSPTRELAHQLAKHIGELVTQAPGVNARIA  316

Query  115  EVKEWHGCRATKGLMKGK--------HYYEVSCHDQGLCR  146
             +      +  + L+ G           +E+    QGL R
Sbjct  317  LLTGGLSVQKQQRLLAGADIVIGTPGRVWEIMSTGQGLIR  356


>sp|Q9GZR7|DDX24_HUMAN ATP-dependent RNA helicase DDX24 OS=Homo 
sapiens OX=9606 GN=DDX24 PE=1 SV=1
Length=859

 Score = 250 bits (637),  Expect = 3e-70, Method: Composition-based stats.
 Identities = 96/436 (22%), Positives = 180/436 (41%), Gaps = 47/436 (11%)

Query  244  EEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTL  303
            E+      ++    L K   G + +     +A        P     L++ P+RELA Q  
Sbjct  347  EKPVPKQNENEEENLDKEQTGNLKQELDDKSATCKAYPKRP--LLGLVLTPTRELAVQVK  404

Query  304  NNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQ  363
             +I    ++     ++  +++GG++ + Q  +L    +IVV TPGRL +L+     +L  
Sbjct  405  QHIDAVARFTG---IKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRN  461

Query  364  VR---FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
            +R    LV+DEAD ++ +G+   ++++   +   +    + Q +V SATL    V +   
Sbjct  462  LRQLRCLVVDEADRMVEKGHFAELSQLLEMLND-SQYNPKRQTLVFSATLT--LVHQAPA  518

Query  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480
            +I+H                 H   +    K D L +++G    +   +    N      
Sbjct  519  RILHK---------------KHTKKMDKTAKLDLLMQKIGMRG-KPKVIDLTRNEATVET  562

Query  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540
              E         K  Y    + ++   ++++F  +      L          P       
Sbjct  563  LTETKIHCETDEKDFYLYYFLMQYP-GRSLVFANSISCIKRLSGLLKVLDIMP-------  614

Query  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600
              + LH      +R +NLE+F + +   L+ TDVAARG+DI  V +VI+  +P   + YV
Sbjct  615  --LTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYV  672

Query  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660
            HR GR  RA   GL++ L+  E    +  +  +         LK+D    ++  + + + 
Sbjct  673  HRSGRTARATNEGLSLMLIGPEDVINFKKIYKT---------LKKDEDIPLFPVQTKYMD  723

Query  661  EIEEHLNCTISQVEPD  676
             ++E +     Q+E  
Sbjct  724  VVKERIRLA-RQIEKS  738


 Score = 89.4 bits (220),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESI-PLILGGGDVLMAAETGSGKTGAFSIP  59
            ++A+ ++ V   + +A+  + +  PT IQA ++ P I    D+L AAETGSGKT AF+IP
Sbjct  191  VSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIP  250

Query  60   VIQIVYETLKDQQEGKKGKTTIKTGAS  86
            +I  V +  K         T    G +
Sbjct  251  MIHAVLQWQKRNAAPPPSNTEAPPGET  277


>sp|Q09775|ROK1_SCHPO ATP-dependent RNA helicase rok1 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=rok1 
PE=3 SV=1
Length=481

 Score = 241 bits (614),  Expect = 3e-70, Method: Composition-based stats.
 Identities = 85/389 (22%), Positives = 150/389 (39%), Gaps = 59/389 (15%)

Query  252  KDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKK  311
            K   +A +    G  +        ++     +P   +A+IV P+REL EQ     ++   
Sbjct  83   KRDLLACAPTGSGKTIAYLFPILQKLQL--HVPGGYRAIIVAPTRELCEQIYRQAEKLSF  140

Query  312  YIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDE  371
                  +   L       +++   L    D+ +GTP RL   + TG L+  +V F V+DE
Sbjct  141  GTSLKIIE--LSKSNEKIQEKAPKLREKYDMCIGTPMRLVQAIQTG-LSFEKVEFFVMDE  197

Query  372  ADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL  431
            AD L   G+ +  + + +           +   + SAT+ S  V++L++ +   P  + +
Sbjct  198  ADRLFEPGFIEQTDHILSAC-----TSSNICKSLFSATIPSR-VEELAKVVTVDPIRIIV  251

Query  432  KGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
              +D+  D++   ++ V   T ++                                    
Sbjct  252  GLKDAATDSIDQRLLFVGSDTSKIVILRQM------------------------------  281

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
                            + +IF +       L    +           +     +HG+   
Sbjct  282  --------ISNGELKPRVVIFVQDIERAKALYTELL---------FDEIHVGVIHGELPQ  324

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
             +R++ L +F+KG++  LI TD+ ARGID HGV  VIN   P    +Y+HRIGR GRA  
Sbjct  325  AKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGN  384

Query  612  MGLAISLVATEKEKVWYHVCS-SRGKGCY  639
             G A++    E  +    +    R  GC 
Sbjct  385  TGQAVTFFTKEDGEYIKLIAGVMRSSGCE  413


 Score = 72.5 bits (176),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 8/94 (9%)

Query  13   IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQ  72
            + + +++ +    T IQ  +IP I    D+L  A TGSGKT A+  P++Q +   +    
Sbjct  57   LCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHV----  112

Query  73   EGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
                         +   +     Y +    + G+
Sbjct  113  ----PGGYRAIIVAPTRELCEQIYRQAEKLSFGT  142


>sp|Q1E9T9|DBP7_COCIM ATP-dependent RNA helicase DBP7 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DBP7 PE=3 SV=1
Length=769

 Score = 248 bits (632),  Expect = 3e-70, Method: Composition-based stats.
 Identities = 98/511 (19%), Positives = 178/511 (35%), Gaps = 93/511 (18%)

Query  212  LGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAP----DGYIV  267
                    P +     F +  L  +       +   K P      ++++      D ++ 
Sbjct  141  EPAKPSNAPLVDGIDTFTSLGLSPSLATHLLTKLNLKTPTAIQKSSITQLLKEECDAFVQ  200

Query  268  KSQHSGNAQVTQTKFL-----------------------PNAPKALIVEPSRELAEQTLN  304
                SG         +                        +   A+++ P+REL +Q   
Sbjct  201  AQTGSGKTLAYLLPIVERLMRISSHNKGKKDSEGNTVHRDSGLFAIVLAPTRELCKQISV  260

Query  305  NIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQ  363
             +    +      +    +IGG   + + + L  G++I+V TPGRL D + +T  L++S 
Sbjct  261  VLDGLLRC--AHWIVAGTVIGGEKKKSEKARLRKGLNILVATPGRLADHLENTKVLDVSN  318

Query  364  VRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK------RLQVIVCSATLHSFDVKK  417
            VR+LVLDE D L+  G+ + I  +  ++ +     K      +   I+CSATL   +V++
Sbjct  319  VRWLVLDEGDRLMDLGFEEEIQGIIKKLDERRRPSKIPDLPAKRTTILCSATL-KMNVQR  377

Query  418  LSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRP  477
            L              GE S+ + +H    P +   +       +         +      
Sbjct  378  L--------------GEISLKEAIHIKADPADEDDE-------QKDGSKQPEFSAPAQLK  416

Query  478  GANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQ--------  529
             + +       +  L         ++  + +AIIF       D   + F ++        
Sbjct  417  QSYAVVAAKLRLVTLTALLKRTFARKGSVMKAIIFVSCADSVDFHFEVFTRRESSEELPD  476

Query  530  ------------------GGGPDKKGHQFSCVCLHGDRKPHERKQNLERF-KKGDVRFLI  570
                                      +      LHG    H R   L  F K+ D   LI
Sbjct  477  ADDENAPSSSNVHGSIATASAFSNPSNNVILHKLHGSLPQHVRTATLSAFAKQKDASVLI  536

Query  571  CTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
            CTDVAARG+D+  V +VI         +++HRIGR  R  R G A+  +    E+ +  +
Sbjct  537  CTDVAARGLDLPNVDFVIEYDPAFCSDDHLHRIGRTARLGRDGRALIFLLPGNEEGYVDI  596

Query  631  CSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE  661
                         +E    ++  NE+  + +
Sbjct  597  LKG--------SYREGSSNSVTRNEVNEILK  619


 Score = 74.0 bits (180),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 24/78 (31%), Positives = 44/78 (56%), Gaps = 3/78 (4%)

Query  1    MAAFSEMGVMPEIA-QAVEEMDWLLPTDIQAESIPLILGGG-DVLMAAETGSGKTGAFSI  58
            +  F+ +G+ P +A   + +++   PT IQ  SI  +L    D  + A+TGSGKT A+ +
Sbjct  154  IDTFTSLGLSPSLATHLLTKLNLKTPTAIQKSSITQLLKEECDAFVQAQTGSGKTLAYLL  213

Query  59   PVIQIVYETLKDQQEGKK  76
            P+++ +   +    +GKK
Sbjct  214  PIVERLMR-ISSHNKGKK  230


>sp|Q6FML5|PRP5_CANGA Pre-mRNA-processing ATP-dependent RNA helicase 
PRP5 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 
/ JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=PRP5 
PE=3 SV=1
Length=816

 Score = 248 bits (634),  Expect = 3e-70, Method: Composition-based stats.
 Identities = 99/429 (23%), Positives = 164/429 (38%), Gaps = 67/429 (16%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNA---PKALIVEPSRELAEQTL  303
                     + +SK   G  +         V   K L N    P A+I  P+RELA Q  
Sbjct  284  PAIMSGRDVIGISKTGSGKTISYLLPMIRHVKAQKKLRNGETGPIAVIFAPTRELAVQIN  343

Query  304  NNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGK---LN  360
              +++    I +  +  +   GG   + Q+  L+ GV+I + TPGR  DL+S      ++
Sbjct  344  EEVQKL---ISDLDISSICCTGGSDLKKQIDKLKTGVEIAIATPGRFIDLLSLNGGNLVS  400

Query  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
              ++ F+V+DEAD L   G+   I  +   +          Q ++ SAT  S  V   + 
Sbjct  401  TLRISFVVMDEADRLFDFGFEPQIASVLRTV------RPDRQCVLFSATFPS-KVSNFAS  453

Query  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480
            + +  P  + +  E  V + ++      + ++D+  E L    +                
Sbjct  454  RFLDSPLQITVNAEGMVNERINQKFTICSDESDKFKELLSLLKV----------------  497

Query  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540
                                  E   ++ IIF  ++  CD +E+                
Sbjct  498  -------------------FNSETVDEKTIIFVSSQQICDIIEKRLTDYSE---------  529

Query  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600
                +H  R  +ER+QNLE FKK     L+CT+V +RG+++  V  VI          YV
Sbjct  530  KLYSIHAGRPYNERRQNLELFKKTSNSILLCTEVMSRGLNVPEVSRVILYNSAKTFAQYV  589

Query  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSS-RGKGCYNTRLKEDGGCTIWYNEMQLL  659
            H  GR  R  R G +ISL+   +    Y +  + R K      +KE        N  Q+ 
Sbjct  590  HSTGRTARGTREGTSISLLLPNELSSAYILNKAMRDKDFSECPVKEVK------NLKQMA  643

Query  660  SEIEEHLNC  668
             + E+ L  
Sbjct  644  QKFEDGLKS  652


 Score = 96.0 bits (237),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 32/147 (22%), Positives = 69/147 (47%), Gaps = 15/147 (10%)

Query  1    MAAFSEMGVMPEIAQAVEEM-DWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
            +  +S++G+  +I + ++++  +   T IQ ++IP I+ G DV+  ++TGSGKT ++ +P
Sbjct  250  VTKWSQLGIPYDIIRFIKDVFSYKSLTPIQTQTIPAIMSGRDVIGISKTGSGKTISYLLP  309

Query  60   VIQIVYETLKDQQEGKKGKT-TIKTGASVLNKWQMNPYDRGSAFAIGSD--GLCCQSREV  116
            +I+ V    K Q++ + G+T  I    +   +  +   +         D   +CC     
Sbjct  310  MIRHV----KAQKKLRNGETGPIAVIFAPTRELAVQINEEVQKLISDLDISSICCTGGSD  365

Query  117  KEWHGCRATKGLMKGKHYYEVSCHDQG  143
             +    +   G+       E++    G
Sbjct  366  LKKQIDKLKTGV-------EIAIATPG  385


>sp|Q59S50|DBP7_CANAL ATP-dependent RNA helicase DBP7 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP7 
PE=3 SV=1
Length=727

 Score = 246 bits (629),  Expect = 4e-70, Method: Composition-based stats.
 Identities = 101/455 (22%), Positives = 174/455 (38%), Gaps = 58/455 (13%)

Query  222  MKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVAL-------------SKAPDGYIVK  268
            MK+   F    L             F  P K   + +             ++   G  + 
Sbjct  131  MKDATNFSGLGLNEKLSIHLTDHLRFMHPTKIQQLVIPSLISTENDLFVKAQTGSGKTLA  190

Query  269  SQHSGNAQVTQ-TKFLPN---APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
                   ++ +  KF  N      A+I+ P+RELA Q    ++   +   +  +   ++I
Sbjct  191  FVLPIFHKLMRENKFKINRESGLFAIILTPTRELATQIYGVLETLTRC--HHWIVPGIVI  248

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDF  383
            GG   + + + L  G +I+V TPGRL D + +T  L++SQ+R+LVLDE D L+  G+ D 
Sbjct  249  GGEKKKSEKARLRKGCNILVATPGRLADHLENTKTLDISQLRWLVLDEGDKLMELGFEDT  308

Query  384  INRMHNQIP---QVTSDGKRLQ-------VIVCSATLHSFDVKKLSEKIMHFPTWVDLKG  433
            I ++  +I    ++    ++ Q        ++CSATLHS +VKKL   ++  P  + ++ 
Sbjct  309  IAQITAKIDSNSKIADTAEKWQGLPSRRINMLCSATLHS-NVKKLGSIVLKDPEMISVET  367

Query  434  ----------------EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRP  477
                              + PD +   VV V PK   +        I             
Sbjct  368  ASVAGTVSFDETIATTTSTAPDQLIQNVVVVPPKLRLVTLDALLLKISKHSAERTIVFFS  427

Query  478  GANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKG  537
             ++S +   +       ++     +E    + ++      + D L            +  
Sbjct  428  CSDSVDFHFDVFTRDGKKFKKVTDEETGEVKTVLVSPEDDENDGL--------LTAPQLS  479

Query  538  HQFSCVCLHGDRKPHERKQNLERF---KKGDVRFLICTDVAARGIDIHGVPYVINVTLPD  594
                   LHG      R   L+ F        + L CTDVA+RG+D+  V  VI    P 
Sbjct  480  DNTIIYKLHGSLSQQTRASTLQSFVKDNNSYNKILFCTDVASRGLDLPNVANVIEYDPPF  539

Query  595  EKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
               +++HRIGR  R    G A   +    E+ +  
Sbjct  540  TIDDHLHRIGRSARLGNEGNATLFLLPGIEEGYVD  574


 Score = 74.0 bits (180),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 24/97 (25%), Positives = 46/97 (47%), Gaps = 4/97 (4%)

Query  2    AAFSEMGVMPEIAQAVEE-MDWLLPTDIQAESIPLILG-GGDVLMAAETGSGKTGAFSIP  59
              FS +G+  +++  + + + ++ PT IQ   IP ++    D+ + A+TGSGKT AF +P
Sbjct  135  TNFSGLGLNEKLSIHLTDHLRFMHPTKIQQLVIPSLISTENDLFVKAQTGSGKTLAFVLP  194

Query  60   VIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
            +   +    K +   + G   I    +   +     Y
Sbjct  195  IFHKLMRENKFKINRESGLFAI--ILTPTRELATQIY  229


>sp|Q9FFT9|RH32_ARATH DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis 
thaliana OX=3702 GN=RH32 PE=2 SV=1
Length=739

 Score = 247 bits (630),  Expect = 4e-70, Method: Composition-based stats.
 Identities = 96/454 (21%), Positives = 174/454 (38%), Gaps = 79/454 (17%)

Query  192  IGCYLDIDKGHVKF----SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEF  247
            IG   D   G V       +    L ++ +    +K+        +++A +         
Sbjct  52   IGKSEDGKNGTVFSRYAGVRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHAL-----  106

Query  248  KFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNI  306
                    +  ++   G  +        ++ + ++ P +    +I+ P+RELA QT   +
Sbjct  107  ---CGRDILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVL  163

Query  307  KQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLD-DLVSTGKLNLSQVR  365
             +  K+    K    L+IGG    D      + ++I+V  PGRL   +  T      Q++
Sbjct  164  NKVGKF---HKFSAGLLIGGREGVDVEKERVHEMNILVCAPGRLLQHMDETPNFECPQLQ  220

Query  366  FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF  425
             L+LDEAD +L   +   ++ + +Q+P      K  Q ++ SAT  +  VK L+   +  
Sbjct  221  ILILDEADRVLDSAFKGQLDPIISQLP------KHRQTLLFSAT-QTKKVKDLARLSLRD  273

Query  426  PTWVDLKGE--DSVPDTVHHVV--VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANS  481
            P ++ +  E   + P ++   V  VPV  K D LW                         
Sbjct  274  PEYISVHAEAVTATPTSLMQTVMIVPVEKKLDMLWS------------------------  309

Query  482  PEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFS  541
                               IK H   + ++F  TK     + + F +   G         
Sbjct  310  ------------------FIKTHLNSRILVFLSTKKQVKFVHEAFNKLRPG-------IP  344

Query  542  CVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI-HGVPYVINVTLPDEKQNYV  600
               LHG     +R     +F +     L CTDV ARG+D    V +V+ V  P++  +Y+
Sbjct  345  LKSLHGKMSQEKRMGVYSQFIE-RQSVLFCTDVLARGLDFDKAVDWVVQVDCPEDVASYI  403

Query  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            HR+GR  R    G ++  +   +EK+   +  ++
Sbjct  404  HRVGRTARFYTQGKSLLFLTPSEEKMIEKLQEAK  437


 Score = 97.1 bits (240),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 8/118 (7%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F+++ +  +  + +++  ++  TD+Q+ +IP  L G D+L AA TGSGKT AF IP+
Sbjct  70   VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPI  129

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY---DRGSAFAIGSDGLCCQSRE  115
            ++ ++      ++G           S   +     +   ++   F   S GL    RE
Sbjct  130  LEKLHRERWSPEDG-----VGCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGRE  182


>sp|Q8K301|DDX52_MOUSE Probable ATP-dependent RNA helicase DDX52 
OS=Mus musculus OX=10090 GN=Ddx52 PE=2 SV=2
Length=598

 Score = 243 bits (621),  Expect = 4e-70, Method: Composition-based stats.
 Identities = 90/443 (20%), Positives = 163/443 (37%), Gaps = 67/443 (15%)

Query  197  DIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFV  256
            D+      F +  ++  +   +  ++ +        ++   +               G  
Sbjct  156  DLPDPIATFQQLDQEYKINSRLLQNILDAGFQVPTPIQMQAIPVML----------HGRE  205

Query  257  ALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNP  316
             L+ AP G       S    +   +      +AL++ P+RELA Q    + +     +  
Sbjct  206  LLASAPTGSGKTLAFSIPILMQLKQPTNKGFRALVISPTRELASQIHRELIKIS---EGT  262

Query  317  KLRELLI-IGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGK--LNLSQVRFLVLDEAD  373
              R  +I    +AA+          DI+V TP RL  L+      ++L+ V +LV+DE+D
Sbjct  263  GFRIHMIHKAAIAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLTNVEWLVVDESD  322

Query  374  GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG  433
             L   G + F  ++ +     TS   R    + SAT   +DV++  +  +     V +  
Sbjct  323  KLFEDGKTGFREQLASIFLACTSPKVRR--AMFSATFA-YDVEQWCKLNLDNVVSVSIGA  379

Query  434  EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK  493
             +S  +TV   ++ V  +T +L                                      
Sbjct  380  RNSAVETVEQELLFVGSETGKLLA------------------------------------  403

Query  494  GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
                   +K+      ++F ++      L    I +G          +   +H +R   +
Sbjct  404  ---MRELVKKGFKPPVLVFVQSIERAKELFHELIYEG---------INVDVIHAERTQQQ  451

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
            R   +  F+ G +  LICT + ARGID  GV  VIN   P     Y+HRIGR GRA   G
Sbjct  452  RDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRG  511

Query  614  LAISLVATEKEKVWYHVCSSRGK  636
             A++    + + +   V +   +
Sbjct  512  KAVTFFTEDDKPLLRSVANVIQQ  534


 Score = 94.8 bits (234),  Expect = 7e-19, Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 54/111 (49%), Gaps = 12/111 (11%)

Query  1    MAAFSEMG----VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
            +A F ++     +   + Q + +  + +PT IQ ++IP++L G ++L +A TGSGKT AF
Sbjct  161  IATFQQLDQEYKINSRLLQNILDAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAF  220

Query  57   SIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            SIP++  +      +Q   KG   +    S   +     +      + G+ 
Sbjct  221  SIPILMQL------KQPTNKGFRAL--VISPTRELASQIHRELIKISEGTG  263


>sp|Q5RDL2|DDX24_PONAB ATP-dependent RNA helicase DDX24 OS=Pongo 
abelii OX=9601 GN=DDX24 PE=2 SV=1
Length=859

 Score = 249 bits (635),  Expect = 6e-70, Method: Composition-based stats.
 Identities = 98/437 (22%), Positives = 182/437 (42%), Gaps = 49/437 (11%)

Query  244  EEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPK-ALIVEPSRELAEQT  302
            E+      ++    L K   G + +     +A     K  P  P   L++ P+RELA Q 
Sbjct  347  EKPVPKQNENEEENLDKEQTGNLKQELDDKSAT---CKTYPKRPLLGLVLTPTRELAVQV  403

Query  303  LNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLS  362
              +I    ++     ++  +++GG++ + Q  +L    +IVV TPGRL +L+     +L 
Sbjct  404  KQHIDAVARFTG---IKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLR  460

Query  363  QVR---FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLS  419
             +R    LV+DEAD ++ +G+   ++++   +   +    + Q +V SATL    V +  
Sbjct  461  NLRQLRCLVVDEADRMVEKGHFAELSQLLEMLND-SQYNPKRQTLVFSATLT--LVHQAP  517

Query  420  EKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGA  479
             +I+H                 H   +    K D L +++G    +   +    N     
Sbjct  518  ARILHK---------------KHTKKMDKTAKLDLLMQKIGMRG-KPKVIDLTRNEATVE  561

Query  480  NSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQ  539
               E         K  Y    + ++   ++++F  +      L          P      
Sbjct  562  TLTETKIHCETDEKDFYLYYFLMQYP-GRSLVFANSISCIKRLSGLLKVLDIMP------  614

Query  540  FSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNY  599
               + LH      +R +NLE+F + +   L+ TDVAARG+DI  V +VI+  +P   + Y
Sbjct  615  ---LTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIY  671

Query  600  VHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLL  659
            VHR GR  RA   GL++ L+  E    +  +  +         LK+D    ++  + + +
Sbjct  672  VHRSGRTARATNEGLSLMLIGPEDVINFKKIYKT---------LKKDEDIPLFPVQTKYM  722

Query  660  SEIEEHLNCTISQVEPD  676
              ++E +     Q+E  
Sbjct  723  DVVKERIRLA-RQIEKS  738


 Score = 87.5 bits (215),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 46/87 (53%), Gaps = 1/87 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESI-PLILGGGDVLMAAETGSGKTGAFSIP  59
            ++A+ ++ V   + +A+  + +  PT IQ  ++ P I    D+L AAETGSGKT AF+IP
Sbjct  191  VSAWKDLFVPRPVLRALSFLGFSAPTPIQVLTLAPAIRDKLDILGAAETGSGKTLAFAIP  250

Query  60   VIQIVYETLKDQQEGKKGKTTIKTGAS  86
            +I  V +  K         T    G +
Sbjct  251  MIHAVLQWQKRNAAPPPSNTEAPPGET  277


>sp|Q9ESV0|DDX24_MOUSE ATP-dependent RNA helicase DDX24 OS=Mus 
musculus OX=10090 GN=Ddx24 PE=1 SV=2
Length=857

 Score = 248 bits (634),  Expect = 6e-70, Method: Composition-based stats.
 Identities = 98/441 (22%), Positives = 178/441 (40%), Gaps = 49/441 (11%)

Query  239  KFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPK-ALIVEPSRE  297
              +  E+      +DG         G +   +     Q+   K  P  P   L++ P+RE
Sbjct  342  PSSLEEKPVPKQNEDGEEKFDAEQAGKL---KQELCDQIAIYKVHPRRPLLGLVLTPTRE  398

Query  298  LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTG  357
            LA Q   +I    K+     +   +++GG++ + Q  +L    +IV+ TPGRL +LV   
Sbjct  399  LAIQVRQHIDAVAKFTG---INTAILVGGMSTQKQQRMLNRHPEIVIATPGRLWELVKEK  455

Query  358  KLNLSQVR---FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFD  414
              +LS +R    LV+DEAD ++ +G+   ++++   +   +      Q +V SATL    
Sbjct  456  HPHLSNLRQLRCLVIDEADRMVEKGHFAELSQLLEMLND-SQYNPSRQTLVFSATLT--L  512

Query  415  VKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDN  474
            V +   +I+H      +   D               K D L +++G    +   +    N
Sbjct  513  VHQAPARILHKKHVKKMDKTD---------------KLDLLMQKVGMRG-KPKVIDLTRN  556

Query  475  TRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPD  534
                    E         K  Y    + ++   ++++F  +      L          P 
Sbjct  557  EGTVETLTETKIHCETDEKDLYLYYFLMQYP-GRSLVFANSISCIKRLSGLLKVLDVMP-  614

Query  535  KKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD  594
                    + LH      +R +NLE+F +     L+ TDVAARG+DI  V +VI+  +P 
Sbjct  615  --------LTLHACMHQKQRLRNLEQFARLQDCVLLATDVAARGLDIPKVQHVIHYQVPR  666

Query  595  EKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYN  654
              + Y+HR GR  RA   GL++ L+  E    +  +  +  K         D    ++  
Sbjct  667  TSEIYIHRSGRTARAASEGLSLMLIGPEDVINFKKIYKTLQK---------DEDIPLFPV  717

Query  655  EMQLLSEIEEHLNCTISQVEP  675
            + + +  ++E +     Q+E 
Sbjct  718  QSKYMDVVKERIRLA-RQIEK  737


>sp|A5D7C1|DDX52_BOVIN Probable ATP-dependent RNA helicase DDX52 
OS=Bos taurus OX=9913 GN=DDX52 PE=2 SV=1
Length=596

 Score = 243 bits (619),  Expect = 8e-70, Method: Composition-based stats.
 Identities = 101/505 (20%), Positives = 182/505 (36%), Gaps = 70/505 (14%)

Query  197  DIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFV  256
            D+      F +  ++  +   +  ++ +        ++   +               G  
Sbjct  153  DLPDPIATFQQLDQEYKINSRLLQNILDAGFQTPTPIQMQAIPVML----------HGRE  202

Query  257  ALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNP  316
             L+ AP G       S    +   +      +ALI+ P+RELA Q    + +     +  
Sbjct  203  LLASAPTGSGKTLAFSIPILMHLKQPTNKGFRALIISPTRELASQIHRELVKLS---EGT  259

Query  317  KLRELLI-IGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGK--LNLSQVRFLVLDEAD  373
              R  +I    VAA+          DI+V TP RL  L+      ++L+ V +LV+DE+D
Sbjct  260  GFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESD  319

Query  374  GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG  433
             L   G + F +++ +     TS   +    + SAT   +DV++     +     V +  
Sbjct  320  KLFEDGKTGFRDQLASIFLACTSHKVKR--AMFSATFA-YDVEQWCRLNLDSVITVSVGA  376

Query  434  EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK  493
             +S  +TV   ++ V  +T +L                                      
Sbjct  377  RNSAVETVEQELLFVGSETGKLLA------------------------------------  400

Query  494  GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
                   +K+      ++F ++      L    I +G          +   +H DR   +
Sbjct  401  ---MRELVKKGFNPPVLVFVQSIERAKELFHELIYEG---------INVDVIHADRTQQQ  448

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
            R   +  F+ G +  LICT + ARGID  GV  VIN   P     Y+HRIGR GRA   G
Sbjct  449  RDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKG  508

Query  614  LAISLVATEKEKVWYHVCSSRGK-GCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQ  672
             A++    + + +   V +   + GC      +     +   + +++ +  E    +IS 
Sbjct  509  KAVTFFTEDDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKKPLER--ESIST  566

Query  673  VEPDIKVPVDEFDGKVTYGQKRAAG  697
                      +   KVT   K+   
Sbjct  567  TPKYFLEKAKDKRKKVTGQNKKKVA  591


 Score = 97.5 bits (241),  Expect = 9e-20, Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 53/111 (48%), Gaps = 12/111 (11%)

Query  1    MAAFSEMG----VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
            +A F ++     +   + Q + +  +  PT IQ ++IP++L G ++L +A TGSGKT AF
Sbjct  158  IATFQQLDQEYKINSRLLQNILDAGFQTPTPIQMQAIPVMLHGRELLASAPTGSGKTLAF  217

Query  57   SIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            SIP++  +      +Q   KG   +    S   +     +      + G+ 
Sbjct  218  SIPILMHL------KQPTNKGFRAL--IISPTRELASQIHRELVKLSEGTG  260


>sp|Q6FY67|MAK5_CANGA ATP-dependent RNA helicase MAK5 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=MAK5 PE=3 SV=1
Length=733

 Score = 246 bits (627),  Expect = 8e-70, Method: Composition-based stats.
 Identities = 96/457 (21%), Positives = 180/457 (39%), Gaps = 57/457 (12%)

Query  242  FGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP-----------NAPKAL  290
                 F        +++  A +G  +  + S  +  T    +P                +
Sbjct  170  LSNLGFTEMTPIQKLSIPAALEGKDIMGKASTGSGKTLAYGIPIIEKMIKSKDNLRTNGI  229

Query  291  IVEPSRELAEQTLNNIKQFKK-YIDNPKLRELLIIGGVAARDQLSVLE--NGVDIVVGTP  347
            I  P+RELA+Q   +++      +       L + GG++ + Q  +L+      IVV TP
Sbjct  230  IFTPTRELAQQVTKHLQNVCSMLLKKNPYMILSLTGGLSIQKQERLLKYDGSARIVVATP  289

Query  348  GRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR---L  401
            GR  +L+   +      +++  LVLDEAD LL  G+ D   ++   + ++    K     
Sbjct  290  GRFLELIEKNEELMKRFAKIDVLVLDEADRLLQDGHFDEFEKILKHLGRIRKSLKNMEYW  349

Query  402  QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK  461
            Q ++ SAT  +    KL+          + K E  +   + H++  +N K+  +      
Sbjct  350  QTLIYSATFSTDLFDKLANSSWKKKN--NSKDESEMESVLKHLMTKINFKSKPMM-----  402

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
                   + A    +  A   E   E   + +  Y    +  +     +IFC +      
Sbjct  403  -------IDANPEDKISAQIKESLIECAPLERDLYCYYFVTLYP-GTTLIFCNSIESVKK  454

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK--------GDVRFLICTD  573
            L  Y I  G          +   +H       R +NLE+F+         G    LI +D
Sbjct  455  LNAYLINLG---------INSFQIHSSMTQKNRLKNLEKFEAMASKNNHLGKPTVLIASD  505

Query  574  VAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE----KVWYH  629
            VAARG+DI G+ +V++  LP     Y+HR GR  R +  G+A+ + + ++     +    
Sbjct  506  VAARGLDIKGIKHVVHYHLPHSADTYIHRSGRTARGDNEGVAVMICSPQEAMGPLRKLRR  565

Query  630  VCSSRGKGCYNTR-LKEDGGCTIWYNEMQLLSEIEEH  665
            + +S+ +   +T+  K      +   E+ +L ++ E 
Sbjct  566  LLASKEQISKSTKNKKWQQTVPLLPIEIDILQQLRER  602


 Score = 89.0 bits (219),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 24/94 (26%), Positives = 44/94 (47%), Gaps = 2/94 (2%)

Query  1    MAAFSE-MGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
            +  +++ + +       +  + +   T IQ  SIP  L G D++  A TGSGKT A+ IP
Sbjct  153  LPGWTDTVDLSMTTINGLSNLGFTEMTPIQKLSIPAALEGKDIMGKASTGSGKTLAYGIP  212

Query  60   VIQIVYETLKD-QQEGKKGKTTIKTGASVLNKWQ  92
            +I+ + ++  + +  G     T +    V    Q
Sbjct  213  IIEKMIKSKDNLRTNGIIFTPTRELAQQVTKHLQ  246


>sp|Q8TFL3|DBP7_CANGA ATP-dependent RNA helicase DBP7 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP7 PE=3 SV=1
Length=715

 Score = 245 bits (625),  Expect = 1e-69, Method: Composition-based stats.
 Identities = 106/551 (19%), Positives = 197/551 (36%), Gaps = 55/551 (10%)

Query  228  FPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDG------YIVKSQHSGNAQVTQTK  281
            F    + +  +     +   +       V + +          +I     SG        
Sbjct  127  FEGLGVGSLVVSHLENKMRIQKSTSIQKVVIPQILQNADKTDFFIHAQTGSGKTLAYLLP  186

Query  282  F------------LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAA  329
                           +   ALI+ P+RELA Q  +             L   L+IGG   
Sbjct  187  IFSAILGMGDHIDRKSGCFALIIAPTRELASQIYHVTTMLANCC--HYLVPCLLIGGERK  244

Query  330  RDQLSVLENGVDIVVGTPGRLDDLVSTGKL----NLSQVRFLVLDEADGLLSQGYSDFIN  385
            + + + L  G + ++GTPGR+ D     K+      S +R++VLDE D L+  G+ + IN
Sbjct  245  KSEKARLRKGCNFIIGTPGRILDHFQNTKVIKEQMQSSLRYVVLDEGDKLMELGFEETIN  304

Query  386  RMHNQIP-------QVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED---  435
            ++   +        +      R+  ++CSAT  + +V KLS++ +     + + G+    
Sbjct  305  QIMEIVNSMDVITRKYPKLPNRIVHLLCSAT-KNNEVAKLSKRSLDNYKVISIGGKKDTM  363

Query  436  ----SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
                SVPD +   VV   PK   +        I+   + A    +               
Sbjct  364  MDNTSVPDQLLQKVVIAPPKLRLITLAGVLDGIQKKPLDAGSVAKRTIVFLSCADSVDYH  423

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
             +       + ++ +               L +         D++     C  LHG    
Sbjct  424  FEVFSGNDGLYKNLVG---------DSVRVLSKGNKILPSIKDEELPGIICYKLHGSLSQ  474

Query  552  HERKQNLERF------KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR  605
              R   L+ F       KG    L CTDVA+RG+D+  V  VI    P   ++++HRIGR
Sbjct  475  QMRTMTLKHFATDSEQTKGKHLILFCTDVASRGLDLPDVSTVIEFDPPFAVEDHLHRIGR  534

Query  606  VGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEH  665
              RA R G A+  +   +E+ +           ++    E       +N++  ++  ++ 
Sbjct  535  TARAGRSGEALLFLLPGEEEGYLDYIQKYHPKGWDLLDAEKDVLIKAFNDID-VARNDKE  593

Query  666  LNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKEAQTS  725
            +  T    E D        + +    +       + KG++  +      ++A ++     
Sbjct  594  IKSTGKTFEWDTNATTWHLNVERRILENEQFKEQATKGYISHVRAYATHISAEKQYFNLK  653

Query  726  FLHLGYLPNQL  736
             +HLG+L    
Sbjct  654  GVHLGHLAKSF  664


 Score = 65.2 bits (157),  Expect = 2e-09, Method: Composition-based stats.
 Identities = 26/98 (27%), Positives = 42/98 (43%), Gaps = 7/98 (7%)

Query  3    AFSEMGVMPEIAQAVE-EMDWLLPTDIQAESIPLILGG---GDVLMAAETGSGKTGAFSI  58
            +F  +GV   +   +E +M     T IQ   IP IL      D  + A+TGSGKT A+ +
Sbjct  126  SFEGLGVGSLVVSHLENKMRIQKSTSIQKVVIPQILQNADKTDFFIHAQTGSGKTLAYLL  185

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
            P+   +   + D  + K G   +    +   +     Y
Sbjct  186  PIFSAIL-GMGDHIDRKSGCFAL--IIAPTRELASQIY  220


>sp|Q94C75|RH25_ARATH DEAD-box ATP-dependent RNA helicase 25 OS=Arabidopsis 
thaliana OX=3702 GN=RH25 PE=2 SV=2
Length=563

 Score = 241 bits (615),  Expect = 2e-69, Method: Composition-based stats.
 Identities = 97/457 (21%), Positives = 169/457 (37%), Gaps = 68/457 (15%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
               L+      +++       V++ A L                 +A +K   G  V   
Sbjct  84   QFPLSPLTLKGIEDAGFKTMTVVQEATLPLIL--------QGKDILAKAKTGTGKTVAFL  135

Query  271  HS-----GNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
                     A              L+V P+RELA Q         KY  +P +   ++IG
Sbjct  136  LPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKY--HPSIGVQVVIG  193

Query  326  GVAAR-DQLSVLENGVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYS  381
            G     +Q  + ++   I+V TPGRL D +         L  V+ LVLDEAD LL  G+ 
Sbjct  194  GTKLPTEQRRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFR  253

Query  382  DFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV  441
              I R+   +P      K+ Q  + SAT+ S +V+++          V LK +    + V
Sbjct  254  REIERIIAAVP------KQRQTFLFSATV-SDEVRQIC--------HVALKRDHEFVNCV  298

Query  442  HHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI  501
                   + K  +++                      A+    +S    +LK       I
Sbjct  299  QEGAGETHQKVSQMY--------------------MIASLDRHFSLLYGLLKKH-----I  333

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
             ++   + IIFC T +    +     +            +   +H  +    R +  + F
Sbjct  334  TDNVGYKVIIFCTTAMVTRLVADLLGKL---------SLNVREIHSRKPQSYRTRVSDEF  384

Query  562  KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT  621
            +K     L+ +DV+ARG+D   V  V+ + LP +++ Y+HR+GR GR  + G  + L+A 
Sbjct  385  RKSKSIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLAP  444

Query  622  EKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
             +E     V            +  +    +    +Q+
Sbjct  445  WEEYFLSSVKDLPITKSSLPPIDHEAVKKVQKGLIQV  481


 Score = 99.0 bits (245),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 23/101 (23%), Positives = 44/101 (44%), Gaps = 1/101 (1%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F +  + P   + +E+  +   T +Q  ++PLIL G D+L  A+TG+GKT AF +P I
Sbjct  80   TRFDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSI  139

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            + V +     ++ +     +        +         +  
Sbjct  140  EAVIKAPPASRDNRHPPIIV-LVVCPTRELACQAAAEANIL  179


>sp|A5DAR2|DBP7_PICGU ATP-dependent RNA helicase DBP7 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP7 PE=3 
SV=3
Length=747

 Score = 245 bits (626),  Expect = 2e-69, Method: Composition-based stats.
 Identities = 95/463 (21%), Positives = 176/463 (38%), Gaps = 59/463 (13%)

Query  222  MKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVAL-------------SKAPDGYIVK  268
            MK    F    L +  +        FK P +     +             ++   G  + 
Sbjct  131  MKGADDFNGLGLNDNLVHHLTESLRFKNPTQIQKSVIPSLLSTSRDLFVKAQTGSGKTLS  190

Query  269  SQHSGNAQVTQTKFLP----NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
                   ++ Q K  P    +   A+++ P+RELA Q    ++   +   + ++   ++I
Sbjct  191  FLLPILHKLMQEKKNPITRESGVFAIVLVPTRELANQIYGVLETLTRC--HHQIVPGIVI  248

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDF  383
            GG   + + + +  GV+I+V TPGRL D + +T  L+LSQ+R+L+LDE D L+  G+ + 
Sbjct  249  GGEKKKSEKARIRKGVNILVATPGRLADHIENTTSLDLSQLRYLILDEGDRLIDLGFEET  308

Query  384  ----------INRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG  433
                       +R+     +      +   ++CSAT+   +V+KL   I++ P  + +  
Sbjct  309  ITKITDTITRCSRISESTQKWQGLPTKRVNVLCSATM-ENNVEKLGSIILNNPEQISIDT  367

Query  434  EDS-----------VPDTVHHVVVPVNPKTD------RLWERLGKSHIRTDDVHAKDNTR  476
              S            P  +   VV V  K         L E    +   + ++       
Sbjct  368  SKSREGDEIDSKSMAPAQLTQRVVVVPAKLRLVTLSAVLKEVAKTAPTSSTEIVRTIVFF  427

Query  477  PGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKK  536
              ++S     EA K    E+      E    + +     + + +  +    +    P   
Sbjct  428  SCSDSVNFHYEAFKRNGSEFRKARNAETNRFEMVTVGEDEANAEGSDTEIPKISSAPTIS  487

Query  537  GHQFSCVCLHGDRKPHERKQNLERF----------KKGDVRFLICTDVAARGIDIHGVPY  586
             +      LHG      R   L+ F             +   L+CTDVA+RG+D+  +  
Sbjct  488  ANSV-VYKLHGSLTQQVRTSTLQSFVQAVPFDNSENNYNHLILLCTDVASRGLDLPNISS  546

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            V+    P   Q+++HRIGR  R    G +   +    E+ +  
Sbjct  547  VVEYDPPFSVQDHLHRIGRTARLGNKGSSYLFLLPGIEEGYVD  589


 Score = 82.1 bits (201),  Expect = 7e-15, Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 7/130 (5%)

Query  4    FSEMGVMPEIAQAVEE-MDWLLPTDIQAESIPLILG-GGDVLMAAETGSGKTGAFSIPVI  61
            F+ +G+   +   + E + +  PT IQ   IP +L    D+ + A+TGSGKT +F +P++
Sbjct  137  FNGLGLNDNLVHHLTESLRFKNPTQIQKSVIPSLLSTSRDLFVKAQTGSGKTLSFLLPIL  196

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQ---SREVKE  118
              + +  K+    + G   I        +     Y            +        E K+
Sbjct  197  HKLMQEKKNPITRESGVFAI--VLVPTRELANQIYGVLETLTRCHHQIVPGIVIGGEKKK  254

Query  119  WHGCRATKGL  128
                R  KG+
Sbjct  255  SEKARIRKGV  264


>sp|Q0D622|RH32_ORYSJ DEAD-box ATP-dependent RNA helicase 32 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os07g0517000 PE=2 
SV=2
Length=773

 Score = 245 bits (626),  Expect = 2e-69, Method: Composition-based stats.
 Identities = 89/430 (21%), Positives = 172/430 (40%), Gaps = 71/430 (17%)

Query  212  LGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQH  271
            L L+ +    ++         ++ A L                 +  +K   G  +    
Sbjct  85   LPLSNKTKDGLRKAGYTEMSEIQRAALPHAL--------CGRDVLGAAKTGSGKTLAFVI  136

Query  272  SGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR  330
                ++ + ++ P +    +++ P+++LA Q  N  ++  K           I+G     
Sbjct  137  PVLEKLYRERWGPEDGVGCIVLSPNKDLAGQIFNVFQKVGKL---HGFSAACIVGNRKGL  193

Query  331  DQLSVLENGVDIVVGTPGRLD-DLVSTGKLNLSQV-RFLVLDEADGLLSQGYSDFINRMH  388
            D+   + N ++I+V TPGRL   +  T   + SQ+ + LV+DEAD +L + + + ++ + 
Sbjct  194  DEEKAVINNMNILVCTPGRLLQHMGETTNFDCSQIQQILVIDEADQVLDKNFQEQVDNVV  253

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDS--VPDTVHHVVV  446
            +Q+P+V       Q ++ SAT  +  VK L+   +  P ++ +  E +   PDT+    +
Sbjct  254  SQLPKV------RQTLLFSAT-QTKSVKDLARVSLKDPEYISVHEEATTATPDTLEQYAM  306

Query  447  PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM  506
             V  +                                         K       IK H  
Sbjct  307  IVPLEQ----------------------------------------KLNMLWSFIKRHLK  326

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
             + ++F  +      + + F +   G        S  C+HG  K   ++  +  FK+G  
Sbjct  327  SRILVFLSSVKQVKFVYEVFKKLRPG-------ISLRCMHGRMKYEVQQAIVAEFKEGHS  379

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
              L  TD+ ARG+DI  V +V+ V  P+    Y+HR+GR  R  + G A+  +  E+EK+
Sbjct  380  -VLFSTDIFARGLDIEDVDWVVQVDCPENIALYIHRVGRTARYNKRGKALIFLCPEEEKM  438

Query  627  WYHVCSSRGK  636
               + ++  K
Sbjct  439  LEKLKAAESK  448


 Score = 94.0 bits (232),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 0/67 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            A F E+ +  +    + +  +   ++IQ  ++P  L G DVL AA+TGSGKT AF IPV+
Sbjct  80   ARFDELPLSNKTKDGLRKAGYTEMSEIQRAALPHALCGRDVLGAAKTGSGKTLAFVIPVL  139

Query  62   QIVYETL  68
            + +Y   
Sbjct  140  EKLYRER  146


>sp|Q5ZBH5|RH25_ORYSJ DEAD-box ATP-dependent RNA helicase 25 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os01g0618400 PE=2 
SV=1
Length=594

 Score = 241 bits (615),  Expect = 3e-69, Method: Composition-based stats.
 Identities = 95/409 (23%), Positives = 160/409 (39%), Gaps = 75/409 (18%)

Query  243  GEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN------AQVTQTKFLPNAPK--------  288
            G E      +     + +  D        +G         +     LPN+ +        
Sbjct  145  GYERMTQVQEATLPVILQGKDVLAKAKTGTGKTVAFLLPAIEVLSALPNSRRDQLRPSIN  204

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAA-RDQLSVLENGVDIVVGTP  347
             L++ P+RELA Q     K+  KY  +  L   ++IGG    ++Q S+  N   I+V TP
Sbjct  205  LLVMCPTRELAIQVAVEAKKLLKY--HRSLGVQVVIGGTRLTQEQRSMQANPCQILVATP  262

Query  348  GRLDDLVSTG---KLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GRL D V         L  V+ LVLDEAD LL  G+   I R+   +P      K  Q +
Sbjct  263  GRLKDHVENTPGFSTRLKGVKVLVLDEADRLLDMGFRRDIERIIASVP------KERQTL  316

Query  405  VCSATLHSFDVKKLSEKIM-HFPTWVDL--KGEDSVPDTVHHVVVPVNPKTDRLWERLGK  461
            + SAT+   +V+++S   M     +++    G++     V  + +               
Sbjct  317  LFSATVP-EEVRQISHIAMKKNYKFINTVKDGDEETHAQVSQMFMIAPLDLH--------  367

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
                                   +S    +LK       + E    + IIFC T +    
Sbjct  368  -----------------------FSILYDVLKKH-----VAEDADYKVIIFCTTAMVTKL  399

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI  581
            + +   Q          + +   +H  +    R +  + F+K     L+ +DV+ARG+D 
Sbjct  400  VAEILSQL---------RLNIREIHSRKSQSARTKVSDEFRKSRGLILVSSDVSARGVDY  450

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
              V  VI V +P ++Q Y+HR+GR GR  + G  + L+A  ++     +
Sbjct  451  PDVTLVIQVGVPADRQQYIHRLGRTGRKGKEGQGLLLLAPWEKYFLSSI  499


 Score = 94.0 bits (232),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 30/131 (23%), Positives = 53/131 (40%), Gaps = 6/131 (5%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F +  + P   +AV++  +   T +Q  ++P+IL G DVL  A+TG+GKT AF +P I
Sbjct  126  TRFDQCTISPLSLKAVKDAGYERMTQVQEATLPVILQGKDVLAKAKTGTGKTVAFLLPAI  185

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQ-----SREV  116
            + V   L + +  +   +          +  +               L  Q     +R  
Sbjct  186  E-VLSALPNSRRDQLRPSINLLVMCPTRELAIQVAVEAKKLLKYHRSLGVQVVIGGTRLT  244

Query  117  KEWHGCRATKG  127
            +E    +A   
Sbjct  245  QEQRSMQANPC  255


>sp|Q6BKH3|DBP7_DEBHA ATP-dependent RNA helicase DBP7 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP7 PE=3 SV=1
Length=798

 Score = 245 bits (626),  Expect = 3e-69, Method: Composition-based stats.
 Identities = 96/482 (20%), Positives = 176/482 (37%), Gaps = 80/482 (17%)

Query  222  MKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVAL-------------SKAPDGYIVK  268
            +K+   F    L +           FK P K     +             ++   G  + 
Sbjct  157  LKDATTFDGLGLNDKLATHLTESLRFKAPTKVQRSVIPSLIATQRDLFVKAQTGSGKTLS  216

Query  269  SQHSGNAQVTQTKF----LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
                   ++   +       +   A+I+ P+REL  Q    ++   +   +  +   ++I
Sbjct  217  FLLPIFHKLMSEEKYKITRESGLFAIILVPTRELCTQIYGVLETLVRC--HHHIVPGIVI  274

Query  325  GGVAARDQLSVLENGVDIVVGTPGRL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDF  383
            GG   + + + L  GV+I+V TPGRL D + +T  L++SQ+R+L+LDE D L   G+ + 
Sbjct  275  GGEKKKSEKARLRKGVNILVATPGRLADHMENTTSLDVSQLRWLILDEGDRLTELGFEET  334

Query  384  INRMHNQIPQVTSDGKRLQV----------IVCSATLHSFDVKKLSEKIMHFPTWVDLKG  433
            I ++ + I + +   + +            ++CSAT+   +VKKL   I++ P  + +  
Sbjct  335  ITKITDNISKNSKISETIHKYQGLPTERVNVLCSATIQD-NVKKLGNMILNNPETISVDS  393

Query  434  EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK  493
               +  T++          D      GK     D +  K    P        S  +K L 
Sbjct  394  NKQIEGTLNFDDEEEQNNFDSNNSE-GKRMSAPDQLIQKILVVPPKLRLVALSAMLKKLS  452

Query  494  GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFS------------  541
             E    ++ +    + I+F       +     F + G    K+ ++ +            
Sbjct  453  KE--TNSLDDGVNRRTIVFFSCSDSLNFHFDVFTRNGNMFKKRKNRETDKFETVEVPYYS  510

Query  542  --------------------------CVCLHGDRKPHERKQNLERF--------KKGDVR  567
                                         LHG     +R   L+ F              
Sbjct  511  KYDNEDDNEEDKPSILTAPILGSNSCVYKLHGSLSQQQRATTLQAFIKEKNEGKNSAKHS  570

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             L CTDVA+RG+D+  +  VI    P   ++++HRIGR  R    G A+  +    E+ +
Sbjct  571  ILFCTDVASRGLDLPNISSVIEYDPPFSVEDHLHRIGRSARVGNEGSAVLFLLPGNEEGY  630

Query  628  YH  629
              
Sbjct  631  VD  632


 Score = 76.3 bits (186),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 25/97 (26%), Positives = 43/97 (44%), Gaps = 4/97 (4%)

Query  2    AAFSEMGVMPEIAQAVEE-MDWLLPTDIQAESIP-LILGGGDVLMAAETGSGKTGAFSIP  59
              F  +G+  ++A  + E + +  PT +Q   IP LI    D+ + A+TGSGKT +F +P
Sbjct  161  TTFDGLGLNDKLATHLTESLRFKAPTKVQRSVIPSLIATQRDLFVKAQTGSGKTLSFLLP  220

Query  60   VIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
            +   +    K +   + G   I        +     Y
Sbjct  221  IFHKLMSEEKYKITRESGLFAI--ILVPTRELCTQIY  255


>sp|Q10RI7|RH38_ORYSJ DEAD-box ATP-dependent RNA helicase 38 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os03g0158200 PE=3 
SV=1
Length=505

 Score = 238 bits (607),  Expect = 5e-69, Method: Composition-based stats.
 Identities = 96/462 (21%), Positives = 167/462 (36%), Gaps = 83/462 (18%)

Query  224  NQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALS---KAPDGYIVKSQHSGNAQ----  276
            + A F    L    LK    E  F  P K   V L      P   ++   H+G+ +    
Sbjct  98   SAAAFEDLKLTPELLKGLHDEMGFSRPSKIQAVTLPMILTPPYKDLIAQAHNGSGKTTCF  157

Query  277  ----VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQ  332
                +++        +A+ + P+RELA+Q  + + +  K+     +     I    A+  
Sbjct  158  VLGMLSRVDPNRKVTQAICICPTRELAQQNKSVLMRMGKFTG---ITCACAIP--PAQKD  212

Query  333  LSVLENGV----DIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRM  387
               +         +V+GT G L   ++  K+  + ++ LV DEAD +L   G+     R+
Sbjct  213  YVPIAKMPKITDQVVIGTSGTLMKWINHKKILTNDIKILVFDEADHMLAEDGFRSDSERI  272

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
               I +        QV++ SAT +   VK    +++     + +K E+   + V    V 
Sbjct  273  MRDIQRSAGG---CQVLLFSATFNER-VKDFVTRVIKDGNQIFVKKEELTLEKVKQYKVQ  328

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
            V  +  ++     K                                           K+ 
Sbjct  329  VPDERAKIAVIKDKIFEFGQ-------------------------------------KVG  351

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
            Q IIF RTK    ++      +          + C  + G     ER++ ++ FK G  +
Sbjct  352  QVIIFVRTKQSTKDVHNALTLE---------DYVCSSIQGSLDQSEREKIIQEFKNGYTK  402

Query  568  FLICTDVAARGIDIHGVPYVINVTLP--------DEKQNYVHRIGRVGRAERMGLAISLV  619
             LI TDV ARG D   V  VIN  +P         + + Y+HRIGR GR  R G   +L+
Sbjct  403  VLISTDVLARGFDQAQVNLVINYDMPIKFGTRDEPDYEVYLHRIGRAGRFGRKGAVFNLL  462

Query  620  ATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE  661
              E +         + +  +   + E        +  + L +
Sbjct  463  CGETDNTVMR----KIETYFQHNVPEVRNWQSEEDFERALKD  500


 Score = 78.2 bits (191),  Expect = 9e-14, Method: Composition-based stats.
 Identities = 25/74 (34%), Positives = 42/74 (57%), Gaps = 3/74 (4%)

Query  2    AAFSEMGVMPEIAQAV-EEMDWLLPTDIQAESIPLILG--GGDVLMAAETGSGKTGAFSI  58
            AAF ++ + PE+ + + +EM +  P+ IQA ++P+IL     D++  A  GSGKT  F +
Sbjct  100  AAFEDLKLTPELLKGLHDEMGFSRPSKIQAVTLPMILTPPYKDLIAQAHNGSGKTTCFVL  159

Query  59   PVIQIVYETLKDQQ  72
             ++  V    K  Q
Sbjct  160  GMLSRVDPNRKVTQ  173


>sp|Q6CTN7|MAK5_KLULA ATP-dependent RNA helicase MAK5 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=MAK5 PE=3 SV=1
Length=796

 Score = 245 bits (625),  Expect = 6e-69, Method: Composition-based stats.
 Identities = 105/521 (20%), Positives = 188/521 (36%), Gaps = 68/521 (13%)

Query  205  FSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDG  264
            FS N         + P           VLK            F  P +    ++  A  G
Sbjct  203  FSSNVDIDDQEPPVLPEWSENMDLSFTVLKG------LSGLGFTRPTEIQLKSIPLALKG  256

Query  265  YIVKSQHSGNAQVTQTKFLP-----------NAPKALIVEPSRELAEQTLNNIKQF-KKY  312
            + +  + S  +  T    +P           +    LI  P+RELA Q  +++++   K 
Sbjct  257  HNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKM  316

Query  313  IDNPKLRELLIIGGVAARDQLSVLE--NGVDIVVGTPGRLDDLVSTGK---LNLSQVRFL  367
                K   L + GG++ + Q  +L+      I+V TPGR  +L+          +++  L
Sbjct  317  NKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTL  376

Query  368  VLDEADGLLSQGYSDFINRMHNQIPQVT---------SDGKRLQVIVCSATLHSFDVKKL  418
            VLDEAD LL  G+ D   ++   + +             G   Q ++ SAT       KL
Sbjct  377  VLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKL  436

Query  419  SEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPG  478
             +       W  LK      + +  V+  +  K         +   +   +      +  
Sbjct  437  DKTS-----WKILKTAGGENNEMEQVLNHLMKKI--------QFKSKPVIIDTNPEHKVT  483

Query  479  ANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGH  538
            +   E   E + + +  Y    I  +     ++FC        L  +             
Sbjct  484  SQVKESLIECLPMERDLYVYYFIMMYP-GTTLVFCNAIDSVKKLNAFLNNL---------  533

Query  539  QFSCVCLHGDRKPHERKQNLERFKK--------GDVRFLICTDVAARGIDIHGVPYVINV  590
            + S   +H       R +NLE+FK+        G    LI +DVAARG+DI G+ +V++ 
Sbjct  534  KISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHY  593

Query  591  TLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE----KVWYHVCSSRGKGCYNTRLKED  646
             LP     Y+HR GR  R +  G+++ + + ++     +    V S++ K     + K  
Sbjct  594  HLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTK-KSSNPRKTKWQ  652

Query  647  GGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGK  687
                +   E  ++S++ E         + +I       D  
Sbjct  653  NDVPMLPLEPDIVSQLRERSKIASELADDEIATKSLHKDDN  693


 Score = 96.0 bits (237),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 34/118 (29%), Positives = 59/118 (50%), Gaps = 7/118 (6%)

Query  5    SEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI-  63
              M +   + + +  + +  PT+IQ +SIPL L G +++  A TGSGKT A+ IP+I+  
Sbjct  222  ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL  281

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQ-----MNPYDRGSAFAIGSDGLCCQSREV  116
            + +T  D+  G     T +    V +  Q     MN  ++ +  ++   GL  Q +E 
Sbjct  282  IKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTG-GLSIQKQER  338


>sp|A5E2I8|SPB4_LODEL ATP-dependent rRNA helicase SPB4 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=SPB4 PE=3 SV=1
Length=637

 Score = 241 bits (616),  Expect = 6e-69, Method: Composition-based stats.
 Identities = 98/463 (21%), Positives = 183/463 (40%), Gaps = 71/463 (15%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYIDN-----PKLRELLIIG--GVAARDQLSVLENGVD  341
            A+++ P+RELA+Q      +  + +       P+++  L++G  G    D  S  EN   
Sbjct  96   AIVMAPTRELAKQIQMVFDKVLELLPEEDSYEPRIKTQLLVGFLGNVREDLDSYQENRPQ  155

Query  342  IVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL  401
            I++ TPGRL D +S   +  S +  ++LDEAD LL   +   + ++   +P      K+ 
Sbjct  156  ILIATPGRLLDFMSLQIVKTSSLEIVILDEADKLLDMSFETDVIKILKMLP------KQR  209

Query  402  QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK  461
            +  + SAT+ +     +    M+ P  + +K ++ + +             +     L  
Sbjct  210  RTGLFSATISAAG-DTIFRTGMNNPVKLQVKTKNFLGEQ------------NNAPTSLQL  256

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
            S++  +  H                      K    ++ +++++  +AI++  T     +
Sbjct  257  SYMMIEPEH----------------------KLTTMLQMLRDNQFKKAIVYFPTCTSVKH  294

Query  522  LEQYFIQ--QGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG----DVRFLICTDVA  575
              Q   +  +    D          LHG      R   LE+F +G        L+ TDVA
Sbjct  295  FYQMLSKLCKSSANDIDISALLFFSLHGQLTTKSRLNTLEKFTEGNDESKKYILMATDVA  354

Query  576  ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE-KEKVWYHVCSSR  634
            ARGIDI  V  VI +  P +   ++HR GR GRA ++G AI ++  + +E+ +      +
Sbjct  355  ARGIDIPDVDLVIQIDPPTDPSVFLHRCGRTGRANKVGRAIVMLNNDTQEEDYVGFMEVK  414

Query  635  GKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKR  694
                      ED     ++N+ Q      + L   + +     ++ V  + G V Y    
Sbjct  415  SVFMTKIDPPEDKDNHSFHNKFQ------KKLRKYMLEDRARHELAVKSYVGFVRY----  464

Query  695  AAGGGSYKGHVDILAPTVQELAALEKEAQTSFLHLGYLPNQLF  737
                  Y  H+  L   +  L  +        L L  +P   +
Sbjct  465  ------YSKHIASLIFRLASLDYIAIAKMYGLLRLPKMPESRY  501


 Score = 91.0 bits (224),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 8/106 (8%)

Query  4    FSEM--GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            +  +   + P +  A+  +++   T +QA +IPL+ G  DV++ A TGSGKT AF+IPV+
Sbjct  10   WENLRVDLEPWLKDAIRSLNYPTMTPVQASTIPLLSGNKDVIVEAVTGSGKTLAFAIPVL  69

Query  62   QIVYETLKDQQEGKKGKTTIKTGA------SVLNKWQMNPYDRGSA  101
            Q V + L    EG++    +K G       +   +           
Sbjct  70   QKVSKRLYQVPEGEEKPEPVKRGHMLAIVMAPTRELAKQIQMVFDK  115


>sp|Q869P0|DDX31_DICDI Probable ATP-dependent RNA helicase ddx31 
OS=Dictyostelium discoideum OX=44689 GN=ddx31 PE=3 SV=2
Length=908

 Score = 246 bits (629),  Expect = 6e-69, Method: Composition-based stats.
 Identities = 102/598 (17%), Positives = 204/598 (34%), Gaps = 108/598 (18%)

Query  230  ACVLKNAELKFNFGEEEFKFP---PKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP--  284
            +  L    ++   G  + + P    +     + K  D  +     SG         +   
Sbjct  211  SLQLSETLVRNLVGHMKHEKPTHIQEASITPILKGNDALVKAQTGSGKTLSYLIPVVQKL  270

Query  285  --------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL  336
                    +    +I+ P+REL+ Q    +++  K      +   +I+GG     + + +
Sbjct  271  TEQRVTRSDGCYCVIITPTRELSSQIYEELQKLLKPFY--WIVPGIIMGGENRSAEKARI  328

Query  337  ENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
              G++I+V TPGRL D + +T       +++ +LDEAD LL  G+   +  + N +    
Sbjct  329  RKGINILVATPGRLLDHLQNTQSFPTDNIKWCILDEADKLLDLGFEKDVTTIINLLDSKK  388

Query  396  SDGK-RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE----------------DSVP  438
               K + Q I+ SATL S  + +L+   +  P ++ L  +                   P
Sbjct  389  RTMKFKRQNILVSATL-SEGISRLASLSLTSPVYIGLDSKVLEKGENPFQAAEKEMLQAP  447

Query  439  DTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGE---  495
              +    V V  K +RL   +     +T ++          NS       +     +   
Sbjct  448  KQLDQFYVEVESK-ERLTSLIAFIRWKTSNITIDKGDVASGNSSANSKMIVFFSSCDSVD  506

Query  496  -------------------------YAVRAIKEHKMDQAIIF------------------  512
                                        + I++HK   + IF                  
Sbjct  507  FHHYMFSNMKMDKERGVKRTKKEQIKQDKLIQQHKQKNSKIFQTGNESDDEESDNDDSDD  566

Query  513  ------CRTKIDCDNLEQYFIQQGGGPDKKGH----QFSCVCLHGDRKPHERKQNLERFK  562
                       +   +E+   +    P+ +            LHG+     R +    FK
Sbjct  567  SDSNNSDSETDEEKEIEKQIKEATSNPNYRVKTSVFSVPIFKLHGELDQQTRTKTFFDFK  626

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
                  L+ TDV+ARG+D+  V +++      + ++Y+HRIGR  R    G ++  +   
Sbjct  627  NSPNGILLTTDVSARGLDLPSVNWIVQYDPCSDTKDYIHRIGRTARLGNQGCSLLFLLPS  686

Query  623  KEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVD  682
            ++K   H+        +N  +KE    TI       L  +    +  + +     ++   
Sbjct  687  EKKYIDHLAK------FNVSVKEMKVTTI-------LQSLFYTSDGQLKKTSKSSQLESQ  733

Query  683  EFDGKVTYGQKRAAGGGSYK----GHVDILAPTVQELAALEKEAQTSFLHLGYLPNQL  736
              D ++ + +       + +     +   L       A ++     S+LHLG++    
Sbjct  734  VHDLQLLFERFLIYDSKAKEMARCAYQSFLRSYATHKADVKSIFHISYLHLGHVSKSF  791


 Score = 82.1 bits (201),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 6/100 (6%)

Query  4    FSEMGVMPEIAQAV-EEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +  + +   + + +   M    PT IQ  SI  IL G D L+ A+TGSGKT ++ IPV+Q
Sbjct  209  WGSLQLSETLVRNLVGHMKHEKPTHIQEASITPILKGNDALVKAQTGSGKTLSYLIPVVQ  268

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
             + E    + +G           +   +     Y+     
Sbjct  269  KLTEQRVTRSDGCY-----CVIITPTRELSSQIYEELQKL  303


>sp|A2QE29|SPB4_ASPNC ATP-dependent rRNA helicase spb4 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=spb4 PE=3 SV=2
Length=642

 Score = 241 bits (616),  Expect = 7e-69, Method: Composition-based stats.
 Identities = 91/403 (23%), Positives = 159/403 (39%), Gaps = 74/403 (18%)

Query  262  PDGYIVKSQHSGNAQVTQTKF--LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNP---  316
              G  +        ++ + +     +   A+I+ P+RELA Q  N +     +       
Sbjct  61   GSGKTLSFLIPVVEKLLRLEEPLKKHHVGAIIISPTRELASQIYNVLTSLLAFHPPSAST  120

Query  317  --------------------KLRELLIIGG--VAARDQLSVLENGVDIVVGTPGRLDDLV  354
                                K+   L++GG    A D  + L+   +++V TPGRL +L+
Sbjct  121  LKPSDDDDDAPRQKFPSSTLKVVPQLLLGGSTTPAEDLSTFLKRSPNLLVSTPGRLLELL  180

Query  355  STGKLNL--SQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHS  412
            S+  ++   S    LV+DEAD LL  G+ D +  +  ++P      K+ +  + SA++ S
Sbjct  181  SSPHVHCPQSSFEMLVMDEADRLLDLGFKDTLQNILRRLP------KQRRTGLFSASV-S  233

Query  413  FDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAK  472
              V ++    +  P  V +K + +              +  R    L  +++     H  
Sbjct  234  EAVDQIVRVGLRNPVKVMVKVKGT-----------SGVQDKRTPASLQMTYLTAPPTHKF  282

Query  473  DNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGG  532
               +    S E   +                    + I+F  T    D L          
Sbjct  283  PAIKHILYSLEPAPQ--------------------KTIMFVSTCSGVDYLSAIL------  316

Query  533  PDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR-FLICTDVAARGIDIHGVPYVINVT  591
            P   G  F  + LHG  + + R++N  RF        L+ TDVA+RG+DI  V  VI + 
Sbjct  317  PSIIGDDFQLIPLHGKHQANVREKNFNRFVNSHTPAILLTTDVASRGLDIPSVDVVIQID  376

Query  592  LPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
             P + + ++HR GR GRA R GL++ L+   +E+ +      R
Sbjct  377  PPSDPKTFIHRCGRAGRAGRKGLSVVLLHPGREEDYVSFLEVR  419


 Score = 93.3 bits (230),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 26/94 (28%), Positives = 43/94 (46%), Gaps = 4/94 (4%)

Query  9    VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETL  68
            +   +  AV  M +   T +QA +IPL +   DV++ A TGSGKT +F IPV++ +    
Sbjct  21   LSEWVLDAVASMGFTRMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLIPVVEKLLRL-  79

Query  69   KDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
               +E  K         S   +     Y+  ++ 
Sbjct  80   ---EEPLKKHHVGAIIISPTRELASQIYNVLTSL  110


>sp|Q1E7Y4|MAK5_COCIM ATP-dependent RNA helicase MAK5 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=MAK5 PE=3 SV=1
Length=783

 Score = 244 bits (623),  Expect = 7e-69, Method: Composition-based stats.
 Identities = 103/530 (19%), Positives = 192/530 (36%), Gaps = 87/530 (16%)

Query  206  SKNGKDLGLAFEIP----PHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKA  261
            + NG   G++F           + + + +  L  AEL+ + G  +F  P       +   
Sbjct  166  TDNGIKTGVSFAALQDEVEEDVDVSAWDSLDLS-AELQTSLGRLKFSSPTPIQSACIPAV  224

Query  262  PDGY------------------------IVKSQHSGNAQVTQTKFLPNAPKALIVEPSRE  297
              G+                        + K +       ++ +     P ALI+ P+RE
Sbjct  225  LQGHDVIGKASTGSGKTLAFGIPIVEYFLGKYRGGRAPTASEERESTKEPMALILSPTRE  284

Query  298  LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTG  357
            LA Q   ++     +  N ++R   + GG++   Q  +L +  DI++ TPGRL ++V + 
Sbjct  285  LAHQLNKHLTDLVNHAPNTQVRIATVTGGLSIYKQQRLLAD-ADIIIATPGRLWEVVGSM  343

Query  358  K---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV--------------------  394
                  L ++RFLV+DEAD LLS+G+   +  + N I +V                    
Sbjct  344  TGFLSKLKKIRFLVIDEADRLLSEGHFKEVEEILNAIDKVEITEEAYGERSEREPEPEPD  403

Query  395  -TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTD  453
                 +  Q +V SAT H    +KLS K       +  + +D +               +
Sbjct  404  EEKKAEPRQTLVFSATFHKGLQQKLSGK-------IRYRNDDLL---------DKKESME  447

Query  454  RLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFC  513
             L  +L     R   +     ++   N  E   +   + K       +  H   + ++F 
Sbjct  448  YLLRKLNFREERPKFIDVNPISQMAQNLKEGLVQCAPMDKDLLLYTLLLYHPKHRTLVFT  507

Query  514  RTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR---FLI  570
             +                    +        LH       R +++ERF          L+
Sbjct  508  NSISAVRR---------LTQLLQNLNLPTFALHSSMAQKARLRSVERFSSLSSDPSSILV  558

Query  571  CTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
             TDVAARG+DI G+  +++  +P     YVHR GR  RA   G +I + A E+      +
Sbjct  559  ATDVAARGLDIKGIDLIVHYHIPRTADTYVHRSGRTARASASGKSILICAPEETTGVARL  618

Query  631  C-----SSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEP  675
                  + +      +++++         + +++  +   +       E 
Sbjct  619  VAKIHSNKKDSSATESKMEKKVPLQSVDLDRRIIDRLRPRVTLAKKITES  668


 Score = 102 bits (254),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 6/108 (6%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++A+  + +  E+  ++  + +  PT IQ+  IP +L G DV+  A TGSGKT AF IP+
Sbjct  189  VSAWDSLDLSAELQTSLGRLKFSSPTPIQSACIPAVLQGHDVIGKASTGSGKTLAFGIPI  248

Query  61   IQIVYETLK------DQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            ++      +        +E +  K  +    S   +         +  
Sbjct  249  VEYFLGKYRGGRAPTASEERESTKEPMALILSPTRELAHQLNKHLTDL  296


>sp|Q7RZH4|MAK5_NEUCR ATP-dependent RNA helicase mak-5 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=mak-5 PE=3 SV=1
Length=805

 Score = 245 bits (624),  Expect = 7e-69, Method: Composition-based stats.
 Identities = 99/516 (19%), Positives = 172/516 (33%), Gaps = 95/516 (18%)

Query  241  NFGEEEFKFPPKDGFVALSKAPDGY-------------------IVKSQHSGNAQVTQTK  281
            +  +  F  P      A+ +   G+                   +++S  S      Q K
Sbjct  223  SIAKLRFSKPTVIQSKAIPEIMAGHDVIGKASTGSGKTLAFGIPVIESWLSAAETRKQNK  282

Query  282  FLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVD  341
                   ALI+ P+RELA+Q  ++++   K +         ++GG+A + Q   L+   D
Sbjct  283  EERKGATALILSPTRELAQQIRDHLQALCKGLPTAPY-ICSVLGGMAVQKQKRQLQV-AD  340

Query  342  IVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT---  395
            IV+ TPGR+ +++S+      +L  + FLVLDEAD LL  G+      +   + +     
Sbjct  341  IVIATPGRMWEVMSSDNSVLASLRNISFLVLDEADRLLKDGHFKEAEEIFKALDRPPVEE  400

Query  396  ------------------------------SDGKRLQVIVCSATLHSFDVKKLSEKIMHF  425
                                              + Q ++ SAT +    +KL+ K    
Sbjct  401  NNEDQKMGGTDEEGQEEEEEDSEEEEEEEEEHVNKRQTLIFSATFNKNLQQKLAGKSKFK  460

Query  426  PTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW  485
             T                         + L ++L         V A    +   N  E  
Sbjct  461  AT--------------------STQDMEYLLQKLNFRE-TPKFVDANPVHQMAENLKEGL  499

Query  486  SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL  545
                 + K  Y    +      +A++F  +      L             +        L
Sbjct  500  IMCGDMEKDLYLYATLMLQPTRRALVFTNSVNSVRRLTPLL---------ENLNLPAFPL  550

Query  546  HGDRKPHERKQNLERFK--------KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQ  597
            H       R ++++RFK         G    L+ TDVAARG+DI  V  VI+  +P   +
Sbjct  551  HSGMIQQARLRSIDRFKANEGAKKKNGSAAILVATDVAARGLDIPDVDLVIHYHVPRAAE  610

Query  598  NYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQ  657
            +YVHR GR  RA   G +I L   ++      + +                     +   
Sbjct  611  DYVHRSGRTARASNSGTSILLCGPKEAVPTQRLVAKVHAQAEVKAGNSGNNTKKLVSSGL  670

Query  658  LLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQK  693
               +I+  +   + +     K   D    K   G++
Sbjct  671  RTIDIDRRIVAKLRERVDLAKKIADAVQAKTMGGKE  706


 Score = 107 bits (268),  Expect = 7e-23, Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 66/161 (41%), Gaps = 18/161 (11%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            M+ +  + + P +  ++ ++ +  PT IQ+++IP I+ G DV+  A TGSGKT AF IPV
Sbjct  208  MSEWVPLDLSPRMISSIAKLRFSKPTVIQSKAIPEIMAGHDVIGKASTGSGKTLAFGIPV  267

Query  61   IQIVY---ETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVK  117
            I+      ET K  +E +KG T +    S   +      D   A       LC       
Sbjct  268  IESWLSAAETRKQNKEERKGATAL--ILSPTRELAQQIRDHLQA-------LCKGLPTAP  318

Query  118  EWHGCRATKGLMKGK---HYYEVSCHDQGLCRVGWSTMQAS  155
                      + K K      ++     G     W  M + 
Sbjct  319  YICSVLGGMAVQKQKRQLQVADIVIATPGRM---WEVMSSD  356


>sp|Q93Y39|RH13_ARATH DEAD-box ATP-dependent RNA helicase 13 OS=Arabidopsis 
thaliana OX=3702 GN=RH13 PE=2 SV=3
Length=826

 Score = 245 bits (625),  Expect = 8e-69, Method: Composition-based stats.
 Identities = 102/463 (22%), Positives = 179/463 (39%), Gaps = 52/463 (11%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            +ALI+ P+RELA Q   +++   K   N  ++ + I+GG+ +  Q   L+   +IVV TP
Sbjct  281  RALIITPTRELALQVTEHLENAAK---NLSVKVVPIVGGMFSEKQERRLKEKPEIVVATP  337

Query  348  GRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG------  398
            GRL +L+S G+   + L  + F VLDEAD ++ +G+   +  + + +P            
Sbjct  338  GRLWELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSILDLLPVTDKPNEGKTQT  397

Query  399  ------------KRLQVIVCSATLH-SFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
                        K+ Q  V SAT+  S D +K  ++             +S+        
Sbjct  398  VKSNDTVLNVPKKKRQTFVFSATIALSSDFRKKLKRGSSKSKQSSSGEVNSI--------  449

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
                   + L ER G        +     +       E + +  +  K  Y    +  H 
Sbjct  450  -------EVLSERAGMRD-NVAIIDLTTTSILAPKIEESFIKCEEKEKDAYLYYILSVHG  501

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
              + I+FC +  D  ++       G              L  + K   R ++++RF+  +
Sbjct  502  QGRTIVFCTSVTDLRHISGLLKILG---------LDVCTLFSEMKQRARLKSIDRFRASE  552

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
               LI TD+ ARGIDI  V  +I+  LP   + YVHR GR  RA   G +I+L+   +  
Sbjct  553  NGILIATDLVARGIDIKNVRTIIHYKLPHSAEVYVHRCGRTARAFADGCSIALIEPNETS  612

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFD  685
             +Y +C S      + ++       +     +L    + +        E   +  + +  
Sbjct  613  KFYTLCKSF--SMESVKIFPLDNSYMPAVRKRLYLARQIYEIERKGSRENADRTWLKKHA  670

Query  686  GKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKEAQTSFLH  728
              +               +V     T   L  L++E  T   H
Sbjct  671  ESMELELDDEESEEERVDNVRQRKATSARLNKLKEELSTLLSH  713


 Score = 88.6 bits (218),  Expect = 9e-17, Method: Composition-based stats.
 Identities = 30/116 (26%), Positives = 53/116 (46%), Gaps = 12/116 (10%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLIL-GGGDVLMAAETGSGKTGAFSIPV  60
            +A+S M + P + +++  +D+  PT IQ     +    G DV+ AAETGSGKT AF +P+
Sbjct  190  SAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPI  249

Query  61   IQIVYETLKD--QQEGKKGKTTIKTGA---------SVLNKWQMNPYDRGSAFAIG  105
            +Q + +  +   +    KG+   K  A         +   +  +   +     A  
Sbjct  250  LQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQVTEHLENAAKN  305


>sp|Q9FNM7|RH26_ARATH DEAD-box ATP-dependent RNA helicase 26 OS=Arabidopsis 
thaliana OX=3702 GN=RH26 PE=1 SV=2
Length=850

 Score = 245 bits (625),  Expect = 1e-68, Method: Composition-based stats.
 Identities = 100/463 (22%), Positives = 171/463 (37%), Gaps = 68/463 (15%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
               L+      +K+       V++ A L                 +A +K   G  V   
Sbjct  386  QFPLSPLSLKAIKDAGFETMTVVQEATLPIIL--------QGKDVLAKAKTGTGKTVAFL  437

Query  271  HSGNAQVTQTKF-----LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
                  V ++              L+V P+RELA Q         KY  +P +   ++IG
Sbjct  438  LPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKY--HPSIGVQVVIG  495

Query  326  GVAAR-DQLSVLENGVDIVVGTPGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYS  381
            G     +Q  +  N   I+V TPGRL D +         L  V+ LVLDEAD LL  G+ 
Sbjct  496  GTKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFR  555

Query  382  DFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV  441
              I R+   +P      K+ Q  + SAT+   +V+++          V LK +    + V
Sbjct  556  RDIERIIAAVP------KQRQTFLFSATVP-EEVRQIC--------HVALKRDHEFINCV  600

Query  442  HHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI  501
                   + K  +++                      A+    +S    +LK       I
Sbjct  601  QEGSGETHQKVTQMY--------------------MIASLDRHFSLLHVLLKEH-----I  635

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
             ++   + IIFC T +    +     Q            +   +H  +    R +  + F
Sbjct  636  ADNVDYKVIIFCTTAMVTRLVADLLSQL---------SLNVREIHSRKPQSYRTRVSDEF  686

Query  562  KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT  621
            +K     L+ +DV+ARG+D   V  V+ + LP +++ Y+HR+GR GR  + G  + L+A 
Sbjct  687  RKSKAIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLAP  746

Query  622  EKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEE  664
             +E     V            +  +    +     Q+  + +E
Sbjct  747  WEEYFMSSVKDLPITKSPLPPIDPEAVKRVQKGLSQVEMKNKE  789


 Score = 101 bits (251),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 23/101 (23%), Positives = 47/101 (47%), Gaps = 1/101 (1%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F +  + P   +A+++  +   T +Q  ++P+IL G DVL  A+TG+GKT AF +P I
Sbjct  382  TRFDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAI  441

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            + V ++    ++ ++    +        +         +  
Sbjct  442  EAVIKSPPASRDSRQPPIIV-LVVCPTRELASQAAAEANTL  481


>sp|A2RA55|DBP7_ASPNC ATP-dependent RNA helicase dbp7 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=dbp7 PE=3 SV=1
Length=771

 Score = 243 bits (621),  Expect = 1e-68, Method: Composition-based stats.
 Identities = 95/474 (20%), Positives = 166/474 (35%), Gaps = 53/474 (11%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAP----DG  264
             +         P +     F    L          + E K P      ++++      D 
Sbjct  129  AEVEDAKPTNAPLIDGLDTFTNLGLSAPLAAHLLTKLEVKAPTAIQKASITQLLKEESDA  188

Query  265  YIVKSQHSGNAQVTQTKFLPN---------------------APKALIVEPSRELAEQTL  303
            +I     SG         +                          A+++ P+REL +Q  
Sbjct  189  FIQAETGSGKTMAYLLPLVQRIMTISLNQKKREEGEQVQRDSGLFAIVLAPTRELCKQIA  248

Query  304  NNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLS  362
              ++   +      +    +IGG   + + + L  G++I+V TPGRL D + +T  L++S
Sbjct  249  VVLEGLLRC--AHWIVAGTVIGGEKKKSEKARLRKGLNILVATPGRLADHLENTQALDVS  306

Query  363  QVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK------RLQVIVCSATLHSFDVK  416
             VR+LVLDE D L+  G+   +  +  ++       +      +   I+CSATL    V+
Sbjct  307  NVRWLVLDEGDRLMELGFEKELAGIIQKLDARQRPSRIPGIPAKRTTILCSATL-KMTVQ  365

Query  417  KLSEKIMHFPTWVDLKGEDS--------------VPDTVHHVVVPVNPKTD--RLWERLG  460
            KL E  +     +     D               VP  +      V  K     L   + 
Sbjct  366  KLGEISLKDAVHIQADPADEDGEPRKKDEDDAFRVPAQLKQSYAIVASKLRLVTLTAFMK  425

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
            ++ +R   V         A+S +   E      G+   +  +    D+       +    
Sbjct  426  RTFMRKGSVMKAIIFVSCADSVDFHFEVFTRKNGDEEEKKEESEDSDEEDA-EEKRKKLG  484

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF-KKGDVRFLICTDVAARGI  579
                  I          +  +   LHG    H R   L  F +  +   LICTDVA+RG+
Sbjct  485  ASAHGTIAPATAFSNPSNPVALHRLHGSLPQHVRTATLGAFARNREPSVLICTDVASRGL  544

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
            D+  V  V+        ++++HRIGR  R  R G A+  +    E+ +  +   
Sbjct  545  DLPNVDLVVEYDPAFSAEDHLHRIGRTARLGRDGRALIFLMPGCEEGYVDILKK  598


 Score = 70.9 bits (172),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 24/86 (28%), Positives = 46/86 (53%), Gaps = 2/86 (2%)

Query  3    AFSEMGVMPEIA-QAVEEMDWLLPTDIQAESIPLILGGG-DVLMAAETGSGKTGAFSIPV  60
             F+ +G+   +A   + +++   PT IQ  SI  +L    D  + AETGSGKT A+ +P+
Sbjct  147  TFTNLGLSAPLAAHLLTKLEVKAPTAIQKASITQLLKEESDAFIQAETGSGKTMAYLLPL  206

Query  61   IQIVYETLKDQQEGKKGKTTIKTGAS  86
            +Q +     +Q++ ++G+   +    
Sbjct  207  VQRIMTISLNQKKREEGEQVQRDSGL  232


>sp|Q750F8|SPB4_EREGS ATP-dependent rRNA helicase SPB4 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=SPB4 PE=3 SV=2
Length=599

 Score = 240 bits (611),  Expect = 1e-68, Method: Composition-based stats.
 Identities = 85/371 (23%), Positives = 145/371 (39%), Gaps = 54/371 (15%)

Query  277  VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI--DNPKLRELLIIGG--VAARDQ  332
               +K        +I+ P+RELA Q    I+ F  Y       ++  L+IG    + RD 
Sbjct  74   ANSSKLKKGHFHTIIISPTRELASQIQGVIEAFLTYYPDGEYPIKSQLLIGSNTSSVRDD  133

Query  333  LSV-LENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQI  391
            ++  LE+   I+VGTPGRL D +    +  S     +LDEAD LL   +   +  +   +
Sbjct  134  VAAFLEHRPQILVGTPGRLLDFLKMPNIKTSSCGAAILDEADKLLDMNFEKDVETILKML  193

Query  392  PQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPK  451
            P      K+ +  + SAT+ S   +   +  M  P  V +K  +  P ++    + + P+
Sbjct  194  P------KQRRTGLFSATVSSAGTQVF-KTGMRNPVKVSVKTSNKAPSSLDINYIVIEPR  246

Query  452  TDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAII  511
                                                    +K +  +  +  ++  + I+
Sbjct  247  ----------------------------------------MKLQLLLTLLNNYRYKKCIV  266

Query  512  FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR-FLI  570
            +  T I          Q     +K         LHG    + R + L+RF +   +  L+
Sbjct  267  YLPTCIAVTYFYSIL-QHLAKLNKMDENLKLYSLHGKLLTNSRMKTLDRFTQELGKAVLL  325

Query  571  CTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
             TDVAARGIDI  +  V+ +  P +   ++HR GR GRA R G AI  +   +E+ +   
Sbjct  326  TTDVAARGIDIPDIDLVLQMDPPIDADIFLHRCGRAGRANRAGRAIVFLNQGREEDYIPF  385

Query  631  CSSRGKGCYNT  641
               +       
Sbjct  386  LQVKNVEAKEL  396


 Score = 91.0 bits (224),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 3/102 (3%)

Query  3    AFSEMG--VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            ++  +   + P I  AV+ M +   T +QA +IPL     DV++ + TGSGKT AF IPV
Sbjct  6    SWDTLDYTLQPWIRTAVDAMGYETMTPVQASTIPLFARNKDVVVESVTGSGKTVAFVIPV  65

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            ++ V +   +  + KKG        S   +          AF
Sbjct  66   LERVIQDDANSSKLKKGHFHT-IIISPTRELASQIQGVIEAF  106


>sp|Q8SR49|SPB4_ENCCU ATP-dependent rRNA helicase SPB4 OS=Encephalitozoon 
cuniculi (strain GB-M1) OX=284813 GN=SPB4 PE=3 SV=1
Length=463

 Score = 236 bits (601),  Expect = 1e-68, Method: Composition-based stats.
 Identities = 89/417 (21%), Positives = 151/417 (36%), Gaps = 71/417 (17%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN-APKALIVEPSRELAEQTLNN  305
             +       V  S    G  +       + +   K        A+++ P+RELA Q    
Sbjct  36   PEVLKGKDVVVQSPTGTGKTMAFLAPILSCIYDGKGRGRPGVTAVVITPTRELALQIREV  95

Query  306  IKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVR  365
               F        ++    IGG++  +    ++    I VGTPGRL ++V       S + 
Sbjct  96   AGLF-------DVKCECFIGGMSIEEDYKRMKEEFSIAVGTPGRLLEIVGKETKKFSSLS  148

Query  366  FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF  425
             LVLDEAD LL  G+ + + ++  ++P      +     + SAT +   V KLS   +  
Sbjct  149  HLVLDEADKLLGFGFEEKLMQLLAKLP------RNRVTGLFSATRND-SVDKLSRVFLRN  201

Query  426  PTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW  485
            P  +++   + +P  + ++VV    K   L + +                          
Sbjct  202  PVSINVGNNE-MPVALEYIVVSPMEKLLVLMDIVT-------------------------  235

Query  486  SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL  545
                                  + I+F  T  + D       + G G        +   +
Sbjct  236  --------------------GRRCIVFFATCSEVDFFSGLVSRAGFG--------NICKI  267

Query  546  HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR  605
            HG     ER +  E F + D   L CTDVAARGID  GV  V++  +P E  + VHR GR
Sbjct  268  HGKISQDERNRVYEEFFQRD-GLLFCTDVAARGIDFRGVDLVVHFDVPKEYSSIVHRSGR  326

Query  606  VGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEI  662
              R    G ++  V    E+ +      +G     +  +     +    +  +  E+
Sbjct  327  TARNGSKGESVLFVMP-NERAYVEFLKLKGIPAVESSYRMKSSLSYQDIKSMISPEL  382


 Score = 83.6 bits (205),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 54/127 (43%), Gaps = 5/127 (4%)

Query  5    SEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIV  64
             ++ +   + + +EE  +   T++Q + IP +L G DV++ + TG+GKT AF  P++  +
Sbjct  7    EDVAMNGRLKKEIEENGFGKMTEVQLKCIPEVLKGKDVVVQSPTGTGKTMAFLAPILSCI  66

Query  65   YETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRA  124
            Y+      +G+          +   +  +   +    F +  +         +++   + 
Sbjct  67   YDG-----KGRGRPGVTAVVITPTRELALQIREVAGLFDVKCECFIGGMSIEEDYKRMKE  121

Query  125  TKGLMKG  131
               +  G
Sbjct  122  EFSIAVG  128


>sp|Q0JL73|RH26_ORYSJ DEAD-box ATP-dependent RNA helicase 26 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os01g0618500 PE=2 
SV=1
Length=536

 Score = 238 bits (606),  Expect = 2e-68, Method: Composition-based stats.
 Identities = 94/408 (23%), Positives = 161/408 (39%), Gaps = 74/408 (18%)

Query  213  GLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHS  272
             ++      +K+        ++ A L               G   L+KA  G   K+   
Sbjct  80   PVSPLSLKAIKDAGYEKMTQVQEATLPIIL----------QGEDVLAKAKTG-TGKTVAF  128

Query  273  GNAQVTQTKFLPNAPKA--LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAA-  329
                +     LP +P    L++ P+RELA Q     ++  KY  +  L   ++IGG    
Sbjct  129  LLPAIELLSTLPRSPSINLLVICPTRELANQVAAEARKLLKY--HRSLGVQVVIGGTKLP  186

Query  330  RDQLSVLENGVDIVVGTPGRLDDLVSTG---KLNLSQVRFLVLDEADGLLSQGYSDFINR  386
            ++Q S+  N   I+V TPGRL D +         +  V+ LVLDEAD LL  G+   I +
Sbjct  187  QEQRSMQSNPCQILVATPGRLKDHLENTPGFSNRIKGVKVLVLDEADRLLDMGFRRDIEK  246

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF-PTWVDL--KGEDSVPDTVHH  443
            +   IP      K  Q ++ SAT+   +V+++S   M     +++   +G++     V  
Sbjct  247  IIAFIP------KERQTLLFSATVP-EEVRQISHIAMKRGYKFINTVKEGDEETHSQVSQ  299

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
            + +                                      +S    +LK       I E
Sbjct  300  MYMVAPLDLH-------------------------------FSILYNVLKKH-----IAE  323

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
                + I+FC T +    + +   Q          + +   +H  +    R +  + F+K
Sbjct  324  DADYKVIVFCTTAMVTKLVAEVLSQL---------KLNIREIHSRKSQSARTKVSDEFRK  374

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
                 L+ +DV+ARG+D   V  VI V LP +++ Y+HR+GR GR  +
Sbjct  375  SKGLILVSSDVSARGVDYPDVTLVIQVGLPADREQYIHRLGRTGRKGK  422


 Score = 94.0 bits (232),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 23/70 (33%), Positives = 40/70 (57%), Gaps = 0/70 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F +  V P   +A+++  +   T +Q  ++P+IL G DVL  A+TG+GKT AF +P I
Sbjct  74   TRFDQCPVSPLSLKAIKDAGYEKMTQVQEATLPIILQGEDVLAKAKTGTGKTVAFLLPAI  133

Query  62   QIVYETLKDQ  71
            +++    +  
Sbjct  134  ELLSTLPRSP  143


>sp|Q9FFQ1|RH31_ARATH DEAD-box ATP-dependent RNA helicase 31 OS=Arabidopsis 
thaliana OX=3702 GN=RH31 PE=2 SV=2
Length=716

 Score = 242 bits (617),  Expect = 2e-68, Method: Composition-based stats.
 Identities = 95/427 (22%), Positives = 163/427 (38%), Gaps = 68/427 (16%)

Query  213  GLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHS  272
             L+      +K+       V++ A L                 +A +K   G  V     
Sbjct  254  PLSPLSLKAIKDAGYETMTVVQEATLPIIL--------KGKDVLAKAKTGTGKTVAFLLP  305

Query  273  GNAQVTQTKF-----LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
                V ++             AL++ P+RELA Q         KY  +P +   ++IGG 
Sbjct  306  SIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKY--HPSIGVQVVIGGT  363

Query  328  AAR-DQLSVLENGVDIVVGTPGRLDDLVSTG---KLNLSQVRFLVLDEADGLLSQGYSDF  383
                +Q  +  N   I+V TPGRL D +         L  V+ LVLDEAD LL  G+   
Sbjct  364  RLGLEQKRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKD  423

Query  384  INRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHH  443
            I R+ + +P      K  Q  + SAT+   +V+++          V L+ +    + VH 
Sbjct  424  IERIISAVP------KERQTFLFSATVP-EEVRQIC--------LVALRRDHEFVNCVHE  468

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
              +  + +  ++                       A+    +S    +L+       I  
Sbjct  469  GTIETHQQVRQM--------------------HMIASLDRHFSLLYTLLREH-----IMG  503

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
            +   + I+FC T +    +     +            +   +H  +    R +    F+K
Sbjct  504  NVDYKVIVFCTTAMVTKLVADLLGEL---------NLNVREIHSRKPQSYRTRVSNEFRK  554

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
                 L+ +DV+ARG+D   V  V+ V LP +++ Y+HR+GR GR  + G  I L+A  +
Sbjct  555  SKGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIHRLGRTGRKGKEGEGILLLAPWE  614

Query  624  EKVWYHV  630
            E     +
Sbjct  615  EYFLSSL  621


 Score = 96.7 bits (239),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 1/91 (1%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F    + P   +A+++  +   T +Q  ++P+IL G DVL  A+TG+GKT AF +P I
Sbjct  248  TRFDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSI  307

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQ  92
            ++V ++     + K+    +        +  
Sbjct  308  EVVVKSPPTSPDNKRPP-ILALVICPTRELA  337


>sp|A6ZL85|MAK5_YEAS7 ATP-dependent RNA helicase MAK5 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=MAK5 PE=3 SV=1
Length=769

 Score = 242 bits (618),  Expect = 3e-68, Method: Composition-based stats.
 Identities = 103/533 (19%), Positives = 187/533 (35%), Gaps = 75/533 (14%)

Query  197  DIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFV  256
            D+D+  +K +   KD+ +    P ++          +   +   N          K    
Sbjct  140  DVDEDVLKENVFNKDINIDDISPVNLPEWTNLAPLSMTILQSLQNLNFLRPTEIQKKSIP  199

Query  257  ALSKAPDGYIVKSQHSGNAQVTQTKFLPN----------APKALIVEPSRELAEQTLNNI  306
             + +  D     S  SG         +             P +LI  P+RELA Q  +++
Sbjct  200  VIMQGVDVMGKASTGSGKTLAYGIPIVEKLISNFSQKNKKPISLIFTPTRELAHQVTDHL  259

Query  307  KQFKKY-IDNPKLRELLIIGGVAARDQLSVLE--NGVDIVVGTPGRLDDLVSTGKL---N  360
            K+  +  +   +   L + GG++ + Q  +L+  N   IV+ TPGR  +L+         
Sbjct  260  KKICEPVLAKSQYSILSLTGGLSIQKQQRLLKYDNSGQIVIATPGRFLELLEKDNTLIKR  319

Query  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR--------LQVIVCSATLHS  412
             S+V  L+LDEAD LL  G+ D   ++   +       +          Q ++ SAT   
Sbjct  320  FSKVDTLILDEADRLLQDGHFDEFEKIIKHLLVERRKNRENSEGSSKIWQTLIFSATFSI  379

Query  413  FDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAK  472
                KLS              ED +   + H++  ++  +  +             +   
Sbjct  380  DLFDKLSSSRQVKDRRFK-NNEDELNAVIQHLMSKIHFNSKPVI------------IDTN  426

Query  473  DNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGG  532
              ++  +   E   E   + +  Y    +        +IFC        L  Y    G  
Sbjct  427  PESKVSSQIKESLIECPPLERDLYCYYFLTMFP-GTTLIFCNAIDSVKKLTVYLNNLG--  483

Query  533  PDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR----------------FLICTDVAA  576
                        +H       R ++LERFK+   +                 LI +DVAA
Sbjct  484  -------IPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVLIASDVAA  536

Query  577  RGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE----KVWYHVCS  632
            RG+DI GV +VI+  LP     Y+HR GR  RA   G++  + + ++     +      +
Sbjct  537  RGLDIPGVQHVIHYHLPRSTDIYIHRSGRTARAGCEGVSAMICSPQESMGPLRKLRKTLA  596

Query  633  SRGKGCYNTR--------LKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDI  677
            ++     +          +K      +   E  +LS++ E         + +I
Sbjct  597  TKNSVSTDLNSRSTNRKPIKWQNTVPLLPIETDILSQLRERSRLAGELADHEI  649


 Score = 90.6 bits (223),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 52/102 (51%), Gaps = 6/102 (6%)

Query  1    MAAFSEM-GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
            +  ++ +  +   I Q+++ +++L PT+IQ +SIP+I+ G DV+  A TGSGKT A+ IP
Sbjct  165  LPEWTNLAPLSMTILQSLQNLNFLRPTEIQKKSIPVIMQGVDVMGKASTGSGKTLAYGIP  224

Query  60   VIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSA  101
            +++ +          +K K  I    +   +      D    
Sbjct  225  IVEKLISNF-----SQKNKKPISLIFTPTRELAHQVTDHLKK  261


>sp|Q54ZI9|DDX20_DICDI Probable ATP-dependent RNA helicase ddx20 
OS=Dictyostelium discoideum OX=44689 GN=ddx20 PE=3 SV=2
Length=849

 Score = 244 bits (622),  Expect = 3e-68, Method: Composition-based stats.
 Identities = 102/463 (22%), Positives = 196/463 (42%), Gaps = 62/463 (13%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR-------------D  331
              P  LI+ P+RE+A Q  + IK   KY    +++  + IGG+ +              +
Sbjct  160  RKPLVLIIAPTREIAVQIKDVIKSISKYC--KRIKCEVFIGGLNSNNNKDENNNNILNNE  217

Query  332  QLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQI  391
             ++ L NG  I+VGTPG++  L+    L    ++ +++DEAD LL   +S  IN +++ I
Sbjct  218  DVNRL-NGTQIIVGTPGKIKSLIENLHLRTDTLKMVIMDEADKLLDASFSKTINWIYSAI  276

Query  392  PQVTSDGKR------LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
                S+         +Q++  SAT  S+ +  L +  M+    V+++     P       
Sbjct  277  GNGNSNKNNSSSGSGIQMLAFSATYPSYLIN-LLKLYMNNENLVEIRLCSDTPS------  329

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
                       E + + +    +   ++N +   N            K +  V  +++  
Sbjct  330  ----------LEGIKQYYQIFRNDFTENNYKTFQN------------KCKSLVLVLEQVS  367

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
              QAIIFC  KI  + L +   ++G         +    + G +   +R   +   K  +
Sbjct  368  FYQAIIFCNHKIRGEELTRQLNREG---------WPTAFIAGGQNQKDRLSTMSALKSFN  418

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +R L+ TD+ +RGID+  V  VIN+ LP + + Y HRIGR GR    G++I+ +  +  +
Sbjct  419  IRILVSTDLISRGIDVERVNLVINLDLPKDHETYFHRIGRTGRFGTYGVSITFINMKSIQ  478

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTI-SQVEPD-IKVPVDE  683
                    + +   N    E+      + E+  ++++ +  +  I  +V+ D I   +  
Sbjct  479  QQQQQQQQQQQQIENENENENNNNNEGFQEIDFINQLIQEYSVDITERVDNDIIPEELYS  538

Query  684  FDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKEAQTSF  726
            +       Q+  A     +    +L   ++EL   E E +  +
Sbjct  539  YQLSNPNDQQSLANLKLKQQQTILLNKQLEELKINENENENQY  581


 Score = 88.6 bits (218),  Expect = 9e-17, Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 3/89 (3%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             FSE+ +  E+ + +E+  +  P+ IQ ++IPL + G D++  A++G+GKT  F +  ++
Sbjct  56   TFSELLLQKEVLKGLEDGGYQRPSPIQLKAIPLGISGVDLIAQAKSGTGKTIVFGVIALE  115

Query  63   IVYETLK---DQQEGKKGKTTIKTGASVL  88
             V    K    +QE  K + T +T   +L
Sbjct  116  CVLRESKLLRQKQELNKTQLTNQTNKQLL  144


>sp|Q6CDS6|ROK1_YARLI ATP-dependent RNA helicase ROK1 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=ROK1 PE=3 
SV=1
Length=547

 Score = 237 bits (605),  Expect = 3e-68, Method: Composition-based stats.
 Identities = 106/472 (22%), Positives = 174/472 (37%), Gaps = 81/472 (17%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
            G+D  L       +  +      +L N  LK N   +      +     L+   D     
Sbjct  99   GEDSPLPIGSFEDLITRFNLHPYLLAN--LKKNKYTDPTPIQCESIPTMLN-GRDLIACA  155

Query  269  SQHSGNAQVTQTKFLP------------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNP  316
               SG         +                KAL+V P++ELA Q  N +      +   
Sbjct  156  PTGSGKTMAYSIPMVEMLGKKKGSKDAKKGIKALVVAPTKELASQIFNAVFSLCVGVGKK  215

Query  317  K--LRELLIIGGVAAR-DQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEAD  373
            K  L+  L+    A +     V     DI + TP RL   ++ G L+L  +  ++ DEAD
Sbjct  216  KDELKPCLLDKSTADKLRNGKVSSQKYDICITTPLRLVSALNDGSLDLGSLDLVIFDEAD  275

Query  374  GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIM-HFPTWVDLK  432
             L  +G++  ++ +    P        +Q  + SAT+    V++L+  IM   P  + + 
Sbjct  276  KLFEKGFATQVDDILAACP------SGIQKTLFSATIP-ASVEQLANSIMSTDPLRIIIG  328

Query  433  GEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKIL  492
             + +   TV   +V    +  +L      +                              
Sbjct  329  NKQAAAQTVEQKLVYAGNEEGKLVAIRQMAR-----------------------------  359

Query  493  KGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPH  552
                     +   +   IIF ++      L +  +  G          +   +HGD    
Sbjct  360  ---------EGQLVAPVIIFLQSIDRAKALFKELVFDG---------INVDQIHGDMTAA  401

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM  612
            +R   ++RF+ G+V  LICTDV ARGID  G+  VIN  +P   Q+YVHRIGR GRA R+
Sbjct  402  KRASVIDRFRNGEVWVLICTDVLARGIDFRGINLVINYDVPQSAQSYVHRIGRTGRAGRL  461

Query  613  GLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEE  664
            G A++    E         ++  K   N   +       W N +  L++ E 
Sbjct  462  GKAVTFFTKED--------ATNVKVVVNVMKQSGQEVPDWLNNLAPLTQKER  505


 Score = 96.7 bits (239),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 40/168 (24%), Positives = 78/168 (46%), Gaps = 16/168 (10%)

Query  1    MAAFSEM----GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
            + +F ++     + P +   +++  +  PT IQ ESIP +L G D++  A TGSGKT A+
Sbjct  106  IGSFEDLITRFNLHPYLLANLKKNKYTDPTPIQCESIPTMLNGRDLIACAPTGSGKTMAY  165

Query  57   SIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREV  116
            SIP+++++ +    +   K  K  +    +   +     ++   +  +   G+  +  E+
Sbjct  166  SIPMVEMLGKKKGSKDAKKGIKALV---VAPTKELASQIFNAVFSLCV---GVGKKKDEL  219

Query  117  KEWHGCRATK-GLMKGKHY---YEVSCHDQGLCRVGWSTMQASLDLGT  160
            K     ++T   L  GK     Y++        R+  +    SLDLG+
Sbjct  220  KPCLLDKSTADKLRNGKVSSQKYDICITTP--LRLVSALNDGSLDLGS  265


>sp|A3LX02|SPB4_PICST ATP-dependent rRNA helicase SPB4 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=SPB4 PE=3 SV=2
Length=617

 Score = 239 bits (609),  Expect = 4e-68, Method: Composition-based stats.
 Identities = 87/399 (22%), Positives = 161/399 (40%), Gaps = 64/399 (16%)

Query  255  FVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI-  313
             + + +     +  SQ  G A     K       A+++ P+RELA Q  +      +Y+ 
Sbjct  65   AIPVLQKVSNRLYDSQEEGEAP---EKVKQGHMLAIVLSPTRELASQIQSVFNNVIEYLP  121

Query  314  -DNPKLRELLIIGGVA--ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLD  370
             D   ++  L++G ++    D    L++   I++ TPGR+ D +S+  + ++ V   +LD
Sbjct  122  EDKIPIKTQLLVGSLSTVRDDLDRFLKDKPHILIATPGRMLDFMSSQYVKMNSVEIAILD  181

Query  371  EADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVD  430
            EAD LL   +   +  +  ++P      K+ +  + SAT+ +     +    M+ P  V 
Sbjct  182  EADKLLDFSFEKDVVNILKRLP------KQRRTGLFSATISAAG-NTIFRAGMNNPVKVA  234

Query  431  LKGE----DSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWS  486
            +K +    +S P  +H   + + P+                                   
Sbjct  235  VKSKSTTANSAPSALHISYLMIEPEK----------------------------------  260

Query  487  EAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLH  546
                  K    ++ + +++  + I++  T     +    F Q+    +     F    LH
Sbjct  261  ------KITTLIKLLHDYRYKKCIVYFPTCTSVKHFYSIF-QKIVNGNDNTESFKFYSLH  313

Query  547  GDRKPHERKQNLERFKKGDV----RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHR  602
            G      R + L+ F  GDV      L+ TDVAARGIDI  V  VI +  P +   ++HR
Sbjct  314  GQLATKPRLRTLQSFTDGDVALNKHILMTTDVAARGIDIPDVDLVIQLDPPTDPDVFLHR  373

Query  603  IGRVGRAERMGLAISLVATEKEKV-WYHVCSSRGKGCYN  640
             GR GRA ++G AI ++     ++ +      +G     
Sbjct  374  CGRTGRANKVGRAIVMLNDGSRELDYVDFMEVKGVAMQE  412


 Score = 94.0 bits (232),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 6/102 (6%)

Query  6    EMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVY  65
            +  + P I +A+  + +   T +QA +IPL+ G  DV++ A TGSGKT AF+IPV+Q V 
Sbjct  14   QYDLQPWIKEAIASLGFPTMTPVQAATIPLLSGNKDVVVEAVTGSGKTLAFAIPVLQKVS  73

Query  66   ETLKDQQEGKKGKTTIKTGA------SVLNKWQMNPYDRGSA  101
              L D QE  +    +K G       S   +         + 
Sbjct  74   NRLYDSQEEGEAPEKVKQGHMLAIVLSPTRELASQIQSVFNN  115


>sp|P0C218|DDX20_DANRE Probable ATP-dependent RNA helicase DDX20 
OS=Danio rerio OX=7955 GN=ddx20 PE=3 SV=1
Length=761

 Score = 242 bits (617),  Expect = 4e-68, Method: Composition-based stats.
 Identities = 93/417 (22%), Positives = 160/417 (38%), Gaps = 65/417 (16%)

Query  222  MKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY-IVKSQHSGNAQ----  276
            +     F + +L    L+       F+ P      A+     G  ++    SG  +    
Sbjct  22   ISGGVEFSSLLLSKPVLE-GLSASGFQRPSPIQLKAIPLGRCGLDLIVQAKSGTGKTCVF  80

Query  277  ---VTQTKFLPNAP-KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQ  332
                  +  L NA  + L++ P+RE+A Q    +      ++   L   + IGG      
Sbjct  81   TTIALDSLILENATTQVLVLAPTREIAVQIHAVVMAIGSAMEG--LECHVFIGGRPISQD  138

Query  333  LSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQ----GYSDFINRMH  388
               L+    I +G+PGR+  L+  G L +S +R  VLDEAD LL       + + IN ++
Sbjct  139  KQHLKK-CHIAIGSPGRIKQLIEMGALMVSSIRLFVLDEADKLLEDDSSSSFQEQINWIY  197

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
            + +P         Q++  SAT      ++LS   M  PT+V L   D     +      V
Sbjct  198  SSLPA------NKQMLALSATYPESLAQQLSR-YMREPTFVRLNPTDPGLLGLKQYYKIV  250

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
               +                                    +   K +  +    +   +Q
Sbjct  251  PSHS--------------------------------LPHKVFEEKVQSLLELFSKIPFNQ  278

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
            A++F        +L      +G            VC+ G     +R + + + K+   R 
Sbjct  279  ALVFSNLHTRAQHLADILSSKG---------LPAVCISGGLSQDQRLEAMWKLKQYQCRV  329

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            LI TD+ +RGID   V  VIN+ +P + + Y+HRIGR GR   +G+A++     +E+
Sbjct  330  LISTDLTSRGIDAEKVNLVINLDVPQDWETYMHRIGRAGRFGTLGVAVTYCCHGEEE  386


 Score = 82.5 bits (202),  Expect = 7e-15, Method: Composition-based stats.
 Identities = 61/390 (16%), Positives = 126/390 (32%), Gaps = 88/390 (23%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS + +   + + +    +  P+ IQ ++IPL   G D+++ A++G+GKT  F+   +  
Sbjct  28   FSSLLLSKPVLEGLSASGFQRPSPIQLKAIPLGRCGLDLIVQAKSGTGKTCVFTTIALDS  87

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC-----------Q  112
            +           +  TT     +   +  +  +    A     +GL C            
Sbjct  88   LI---------LENATTQVLVLAPTREIAVQIHAVVMAIGSAMEGLECHVFIGGRPISQD  138

Query  113  SREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGK  172
             + +K+ H    + G +K     E+        R+ +   +A   L  D           
Sbjct  139  KQHLKKCHIAIGSPGRIK--QLIEMGALMVSSIRL-FVLDEADKLLEDDSSS--------  187

Query  173  KSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSK---NGKDLGLAFEIPPHMKNQALFP  229
             S  +Q +                        +S    N + L L+   P  +  Q    
Sbjct  188  -SFQEQINW----------------------IYSSLPANKQMLALSATYPESLAQQ----  220

Query  230  ACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP--  287
               L     +  F       P   G     K    + +  +       +  +     P  
Sbjct  221  ---LSRYMREPTFVRLNPTDPGLLGLKQYYKIVPSHSLPHKVFEEKVQSLLELFSKIPFN  277

Query  288  KALIVE--PSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVD  341
            +AL+     +R          +     + +  L  + I GG++   +L  +    +    
Sbjct  278  QALVFSNLHTR---------AQHLADILSSKGLPAVCISGGLSQDQRLEAMWKLKQYQCR  328

Query  342  IVVGTPGRLDDLVSTGKLNLSQVRFLV-LD  370
            +++ T     DL S G ++  +V  ++ LD
Sbjct  329  VLIST-----DLTSRG-IDAEKVNLVINLD  352


>sp|Q54TF8|DDX19_DICDI ATP-dependent RNA helicase ddx19 OS=Dictyostelium 
discoideum OX=44689 GN=helC PE=2 SV=1
Length=465

 Score = 234 bits (597),  Expect = 5e-68, Method: Composition-based stats.
 Identities = 106/470 (23%), Positives = 191/470 (41%), Gaps = 87/470 (19%)

Query  190  DTIGCYLDI----DKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEE  245
            D  G  LDI        +   K  ++LGL  E+   +          ++ A L       
Sbjct  49   DEFGIQLDIQQSDPNSPLYSVKTFEELGLKPELLKGVYAMGYNKPSKIQEAAL-------  101

Query  246  EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNN  305
                   +  +A S++  G            +       NAP+A+ + P++ELA QT   
Sbjct  102  PIIIQSPNNLIAQSQSGTGKTAAFTL---GMLNCVDPSINAPQAICISPTKELALQTFEV  158

Query  306  IKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVR  365
            I +  ++     ++ LL I  +     ++       +++GTPG++ + V   +L++  ++
Sbjct  159  ISKIGQF---SNIKPLLYISEIEVPKNVTN-----QVIIGTPGKILENVIKKQLSVKFLK  210

Query  366  FLVLDEADGLLSQ-GYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH  424
             +VLDEAD ++      + I  ++  +P        ++V + SAT  S  V++L +KI+ 
Sbjct  211  MVVLDEADFIVKMKNVPNQIAMINRLLP------SNVKVCLFSATF-SMGVEELIKKIVQ  263

Query  425  FP-TWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPE  483
             P T + LK ++   + +H   +    + ++                             
Sbjct  264  DPYTSIRLKRQELSVEKIHQYFIDCGSEDNKAL---------------------------  296

Query  484  MWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCV  543
                   IL   Y   ++      Q+I+F  T     ++ Q  + +G          S  
Sbjct  297  -------ILSDIYGFISV-----GQSIVFVHTIATAKSVHQKMVDEG---------HSVS  335

Query  544  CLHG-DRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP------DEK  596
             L+G D    ER + ++ FK G  + LI T+V ARGIDI  V  VIN  +P       + 
Sbjct  336  LLYGKDLTTEERFKQIKDFKDGKSKVLITTNVLARGIDIPQVSLVINYDVPLDEMGKPDP  395

Query  597  QNYVHRIGRVGRAERMGLAISLVATEKE-KVWYHVCSSRGKGCYNTRLKE  645
             +Y+HRIGRVGR  R G+A+S V  ++      ++ +  G      +  E
Sbjct  396  VHYLHRIGRVGRFGRSGVALSFVYDQQSTNKLMNISTHLGVPLKELKSSE  445


 Score = 89.4 bits (220),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 50/104 (48%), Gaps = 10/104 (10%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG-GDVLMAAETGSGKTGAFSIP  59
            +  F E+G+ PE+ + V  M +  P+ IQ  ++P+I+    +++  +++G+GKT AF++ 
Sbjct  69   VKTFEELGLKPELLKGVYAMGYNKPSKIQEAALPIIIQSPNNLIAQSQSGTGKTAAFTLG  128

Query  60   VIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
            ++  V  ++   Q             S   +  +  ++  S   
Sbjct  129  MLNCVDPSINAPQ---------AICISPTKELALQTFEVISKIG  163


>sp|Q750Q4|MS116_EREGS ATP-dependent RNA helicase MSS116, mitochondrial 
OS=Eremothecium gossypii (strain ATCC 10895 / CBS 
109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=MSS116 PE=3 SV=1
Length=658

 Score = 239 bits (610),  Expect = 5e-68, Method: Composition-based stats.
 Identities = 99/453 (22%), Positives = 178/453 (39%), Gaps = 60/453 (13%)

Query  245  EEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLN  304
             +     +   VA +K   G  +        ++ +     N  KA+++ P+R+LA Q  N
Sbjct  157  LKPILQTEHDVVARAKTGTGKTLAFLMPLFQRLLEGPPSENV-KAVVIAPTRDLAAQIFN  215

Query  305  NIKQFKKYI-DNPKLRELLIIGGVAARDQLSVL-ENGVDIVVGTPGRLDDLVST-GKLNL  361
             I + +       +   ++++GG +  +    L     +IVV TPGRL D++   G    
Sbjct  216  EINEMRNANRKLRRFNAVVMMGGSSRTETFRSLERRRPNIVVATPGRLIDMLEACGPKYF  275

Query  362  SQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK-RLQVIVCSATLHSFDVKKLSE  420
            ++V F VLDEAD LL  G+   + ++++ + Q+   G   ++ ++ SATL    V+ L+ 
Sbjct  276  TEVDFKVLDEADTLLEIGFKQALEQINDILNQLNQKGTTHIRTLLVSATL-DDKVQSLAN  334

Query  421  KIMHFPTWVDLK----GEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTR  476
             IM+    + +      E +  + +   VV      D +   L K               
Sbjct  335  SIMNHAKCLFIDTVDPNEQATNENIAQKVVISKDFADNITASLYKIREEASA--------  386

Query  477  PGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKK  536
                                       +   +AI+F  T +  +   +    Q  G    
Sbjct  387  ---------------------------NPKLKAIVFMPTIVAVEYWGELLQSQCRGT---  416

Query  537  GHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEK  596
                  +  HG      R   ++RF+  D   L+CTDVAARG+D+  V +V  V +P   
Sbjct  417  ----PVLLFHGGLSQGRRNSTMKRFRAMDSGILVCTDVAARGMDVSDVQHVYQVGVPTSP  472

Query  597  QNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEM  656
             NY+HRIGR GRA R G +   +A  +  +   +   +     + +   D          
Sbjct  473  DNYIHRIGRTGRAGRKGSSTIFLAEHELCIL-DILRRKNNVVISDQETFDAAA-------  524

Query  657  QLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVT  689
            Q LS++ E  +    ++   +   +  + G   
Sbjct  525  QELSDVREAFSLDRDRLHDFLLKNLSFYRGSQG  557


 Score = 72.9 bits (177),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 20/102 (20%), Positives = 42/102 (41%), Gaps = 8/102 (8%)

Query  9    VMPEIAQAVEEMDWLLPTDIQAESIPLILG-GGDVLMAAETGSGKTGAFSIPVIQIVYET  67
            +  E+ + ++   +   T +Q +++  IL    DV+  A+TG+GKT AF +P+ Q + E 
Sbjct  133  LSNELYEMLQSRGFDKLTPVQQKTLKPILQTEHDVVARAKTGTGKTLAFLMPLFQRLLE-  191

Query  68   LKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGL  109
                  G   +       +         ++  +     +  L
Sbjct  192  ------GPPSENVKAVVIAPTRDLAAQIFNEINEMRNANRKL  227


>sp|Q5BGX6|DBP7_EMENI ATP-dependent RNA helicase dbp7 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=dbp7 PE=3 SV=1
Length=778

 Score = 242 bits (617),  Expect = 5e-68, Method: Composition-based stats.
 Identities = 89/413 (22%), Positives = 161/413 (39%), Gaps = 69/413 (17%)

Query  266  IVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
            + ++++ G+A+   +    +   A+I+ P+REL +Q    ++   +      +    +IG
Sbjct  218  LSRAKNEGDAKGDTSVHRDSGLFAIILAPTRELCKQISVVLEGLLRC--AHWIVAGTVIG  275

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            G   + + + L  G++I+V TPGRL D + +T  L++S VR+LVLDE D L+  G+   +
Sbjct  276  GEKKKSEKARLRKGLNILVATPGRLADHLENTQALDVSNVRWLVLDEGDRLMELGFEKEL  335

Query  385  NRMHNQIPQVTSDGK------RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVP  438
              + +++       +      +   I+CSATL   +V+KL E  +     +     D   
Sbjct  336  QEIISKLDARQRPSRIPGVPAKRATILCSATL-KMNVQKLGEISLKDAVHIKADPAD---  391

Query  439  DTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAV  498
            +         +    R+  +L +S+                         +  L      
Sbjct  392  EDGEKTAEDKDGDAFRVPAQLKQSYAIVAA-----------------KLRLVTLTAFMKR  434

Query  499  RAIKEHKMDQAIIFCR------------TKIDCDNLEQYFIQQGGGPD------------  534
              +++  + +AIIF              T+   + LE     +G   +            
Sbjct  435  TFMRKGSVMKAIIFVSCADSVNFHFEVFTRKLAEQLEGDNPDEGSDSEHEKEKEKEKPTP  494

Query  535  --------------KKGHQFSCVCLHGDRKPHERKQNLERF-KKGDVRFLICTDVAARGI  579
                             +  +   LHG    H R   L  F K  D   LICTDVA+RG+
Sbjct  495  ASTHGTVAPATAFSNSSNAVTMYKLHGSLPQHVRTSTLSSFAKNRDPSVLICTDVASRGL  554

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
            D+  V  V+          ++HRIGR  R  R G A+  +    E+ +  +  
Sbjct  555  DLPNVDLVVEYDPAFSADEHLHRIGRTARLGRDGRALVFLLPGCEENYVEILK  607


 Score = 75.2 bits (183),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 3/82 (4%)

Query  3    AFSEMGVMPEIA-QAVEEMDWLLPTDIQAESIPLILGGG-DVLMAAETGSGKTGAFSIPV  60
             F+ +G+ P +A   + +++   PT IQ  SI  +L    D  + AETGSGKT A+ +P+
Sbjct  152  TFTNLGLSPTLAAHLLTKLELKAPTAIQKASITQLLKEETDAFIQAETGSGKTLAYLLPL  211

Query  61   IQIVYETLKDQQEG-KKGKTTI  81
            +Q +    + + EG  KG T++
Sbjct  212  VQRIMALSRAKNEGDAKGDTSV  233


>sp|P38112|MAK5_YEAST ATP-dependent RNA helicase MAK5 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MAK5 
PE=1 SV=1
Length=773

 Score = 241 bits (616),  Expect = 6e-68, Method: Composition-based stats.
 Identities = 100/520 (19%), Positives = 180/520 (35%), Gaps = 75/520 (14%)

Query  210  KDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKS  269
            KD+ +    P ++          +   +   N          K     + +  D     S
Sbjct  157  KDINIDDISPVNLPEWTNLAPLSMTILQSLQNLNFLRPTEIQKKSIPVIMQGVDVMGKAS  216

Query  270  QHSGNAQVTQTKFLPN----------APKALIVEPSRELAEQTLNNIKQFKKY-IDNPKL  318
              SG         +             P +LI  P+RELA Q  +++K+  +  +   + 
Sbjct  217  TGSGKTLAYGIPIVEKLISNFSQKNKKPISLIFTPTRELAHQVTDHLKKICEPVLAKSQY  276

Query  319  RELLIIGGVAARDQLSVLE--NGVDIVVGTPGRLDDLVSTGKL---NLSQVRFLVLDEAD  373
              L + GG++ + Q  +L+  N   IV+ TPGR  +L+          S+V  L+LDEAD
Sbjct  277  SILSLTGGLSIQKQQRLLKYDNSGQIVIATPGRFLELLEKDNTLIKRFSKVNTLILDEAD  336

Query  374  GLLSQGYSDFINRMHNQIPQVTSDGKR--------LQVIVCSATLHSFDVKKLSEKIMHF  425
             LL  G+ D   ++   +       +          Q ++ SAT       KLS      
Sbjct  337  RLLQDGHFDEFEKIIKHLLVERRKNRENSEGSSKIWQTLIFSATFSIDLFDKLSSSRQVK  396

Query  426  PTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW  485
                    ED +   + H++  ++  +  +             +     ++  +   E  
Sbjct  397  DRRFK-NNEDELNAVIQHLMSKIHFNSKPVI------------IDTNPESKVSSQIKESL  443

Query  486  SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL  545
             E   + +  Y    +        +IFC        L  Y    G              +
Sbjct  444  IECPPLERDLYCYYFLTMFP-GTTLIFCNAIDSVKKLTVYLNNLG---------IPAFQI  493

Query  546  HGDRKPHERKQNLERFKKGDVR----------------FLICTDVAARGIDIHGVPYVIN  589
            H       R ++LERFK+   +                 LI +DVAARG+DI GV +VI+
Sbjct  494  HSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVLIASDVAARGLDIPGVQHVIH  553

Query  590  VTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE----KVWYHVCSSRGKGCYNTR---  642
              LP     Y+HR GR  RA   G++  + + ++     +      +++     +     
Sbjct  554  YHLPRSTDIYIHRSGRTARAGSEGVSAMICSPQESMGPLRKLRKTLATKNSVSTDLNSRS  613

Query  643  -----LKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDI  677
                 +K      +   E  +LS++ E         + +I
Sbjct  614  TNRKPIKWQNTVPLLPIETDILSQLRERSRLAGELADHEI  653


 Score = 90.6 bits (223),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 52/102 (51%), Gaps = 6/102 (6%)

Query  1    MAAFSEM-GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
            +  ++ +  +   I Q+++ +++L PT+IQ +SIP+I+ G DV+  A TGSGKT A+ IP
Sbjct  169  LPEWTNLAPLSMTILQSLQNLNFLRPTEIQKKSIPVIMQGVDVMGKASTGSGKTLAYGIP  228

Query  60   VIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSA  101
            +++ +          +K K  I    +   +      D    
Sbjct  229  IVEKLISNF-----SQKNKKPISLIFTPTRELAHQVTDHLKK  265


>sp|Q0UHM7|DBP7_PHANO ATP-dependent RNA helicase DBP7 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=DBP7 PE=3 SV=1
Length=831

 Score = 243 bits (619),  Expect = 6e-68, Method: Composition-based stats.
 Identities = 102/492 (21%), Positives = 176/492 (36%), Gaps = 76/492 (15%)

Query  212  LGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKA----PDGYIV  267
              +     P       F +  +          + + K P      A+++      D +I 
Sbjct  171  EPIEPSNAPLSSELDTFTSLGISTTLAAHLLKKMDLKAPTAIQKAAITQLVKDDSDAFIQ  230

Query  268  KSQHSGNAQVTQTKFLPN---------------------APKALIVEPSRELAEQTLNNI  306
                SG         +                          A+I+ P+REL++Q    +
Sbjct  231  AETGSGKTLAYLLPIVQRLMELSANMKKHKDDDAVQRNSGLFAIIMAPTRELSKQIALVL  290

Query  307  KQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVS-TGKLNLSQVR  365
            ++         L    +IGG   + + + L  G++I+V TPGRL D +  T  L++S VR
Sbjct  291  EKLL--GCAHWLVATTVIGGEKKKSEKARLRKGINILVATPGRLADHLEHTEALDVSNVR  348

Query  366  FLVLDEADGLLSQGYSDFINRMHNQIP--------QVTSDGKRLQVIVCSATLHSFDVKK  417
            +LVLDE D L+  G+   I ++   +         ++     +   ++CSAT+   DV++
Sbjct  349  WLVLDEGDRLMELGFEQEIQKIVGALNLRMRGNKTRIPGLPDKRTTVLCSATM-KMDVER  407

Query  418  LSEKIMHFPTWVDLKGEDS-------------VPDTVHHVVVPVNPKTD--RLWERLGKS  462
            L +  +     +     +               P  +      V PK     L   L ++
Sbjct  408  LGQISLKDAVHLRADPTEREQEGDEPQDERSYAPAQLKQSYAVVAPKLRLVSLIAYLKRA  467

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRA----------------IKEHKM  506
              R   V         A+S +   + +     E   +A                 K  K 
Sbjct  468  FTRKGSVMKAIVFVSCADSVDFHFDILTSNLEEKNEKAEGTKDDTEEKADDDEPKKSTKK  527

Query  507  DQAI-IFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF-KKG  564
             +AI     TK+   +       +      K H  +   LHG  +   R   L  F K  
Sbjct  528  PKAIPQADPTKLSVTH------AESPVLSPKSHAVTAYRLHGSLQQSLRTSTLAHFTKNN  581

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
            D   LI TDVA+RG+D+  V  V+       +++++HRIGR  RA R G A   +    E
Sbjct  582  DAAVLIATDVASRGLDLPNVDLVVEFDPAFAREDHLHRIGRTARAGRDGRACIFLMPGPE  641

Query  625  KVWYHVCSSRGK  636
            + +  +  +  K
Sbjct  642  EGYVDILKTDRK  653


 Score = 70.5 bits (171),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 31/137 (23%), Positives = 55/137 (40%), Gaps = 11/137 (8%)

Query  3    AFSEMGVMPEIA-QAVEEMDWLLPTDIQAESIPLILGG-GDVLMAAETGSGKTGAFSIPV  60
             F+ +G+   +A   +++MD   PT IQ  +I  ++    D  + AETGSGKT A+ +P+
Sbjct  186  TFTSLGISTTLAAHLLKKMDLKAPTAIQKAAITQLVKDDSDAFIQAETGSGKTLAYLLPI  245

Query  61   IQIVYE------TLKDQQEGKKGKTTIKTGASVLNKWQMNP---YDRGSAFAIGSDGLCC  111
            +Q + E        KD    ++         +   +         ++    A        
Sbjct  246  VQRLMELSANMKKHKDDDAVQRNSGLFAIIMAPTRELSKQIALVLEKLLGCAHWLVATTV  305

Query  112  QSREVKEWHGCRATKGL  128
               E K+    R  KG+
Sbjct  306  IGGEKKKSEKARLRKGI  322


>sp|P36120|DBP7_YEAST ATP-dependent RNA helicase DBP7 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP7 
PE=1 SV=1
Length=742

 Score = 241 bits (614),  Expect = 7e-68, Method: Composition-based stats.
 Identities = 108/582 (19%), Positives = 202/582 (35%), Gaps = 66/582 (11%)

Query  208  NGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAP-----  262
            N  D  +A            F +  + +  +     +   K P      A+ +       
Sbjct  125  NIHDENVAINPSNAPLKGDQFASLGVSSLLVSHLEQKMRIKKPTSIQKQAIPQIIGNAGK  184

Query  263  -DGYIVKSQHSGNAQVTQTKFLP------------NAPKALIVEPSRELAEQTLNNIKQF  309
             D +I     SG         +             +   AL++ P+RELA Q  +     
Sbjct  185  NDFFIHAQTGSGKTLSYLLPIISTILNMDTHVDRTSGAFALVIAPTRELASQIYHVCSTL  244

Query  310  KKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKL---NLSQ-VR  365
                    L   L+IGG   + + + L  G + ++GTPGR+ D +   K+    LSQ +R
Sbjct  245  VSCC--HYLVPCLLIGGERKKSEKARLRKGCNFIIGTPGRVLDHLQNTKVIKEQLSQSLR  302

Query  366  FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR-------LQVIVCSATLHSFDVKKL  418
            ++VLDE D L+  G+ + I+ +   +  +  + ++       L  ++CSATL    V +L
Sbjct  303  YIVLDEGDKLMELGFDETISEIIKIVHDIPINSEKFPKLPHKLVHMLCSATLTDG-VNRL  361

Query  419  SEKIMHFPTWVDLKGED------SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAK  472
                +     +    +         PD +   +  V PK   +      ++I  D + + 
Sbjct  362  RNVALKDYKLISNGTKKDSDIVTVAPDQLLQRITIVPPKLRLVTLAATLNNITKDFIASG  421

Query  473  DNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGG  532
              ++       +          +    +   HK         T      L +        
Sbjct  422  QQSKTLRTIVFVSCSDSVEFHYDAFSGSDGHHKN-------LTGDSVRLLTKGNTMFPCF  474

Query  533  PDKKGHQFSCVCLHGDRKPHERKQNLERF------KKGDVRFLICTDVAARGIDIHGVPY  586
             D +        LHG      R   L+ F       KG    + CTDVA+RG+D+  V  
Sbjct  475  SDSRDPDVVIYKLHGSLSQQMRTSTLQHFARDNEATKGKHLIMFCTDVASRGLDLPHVGS  534

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS-------SRGKGCY  639
            VI +  P   ++++HR+GR  RA   G ++  +   +E+ +               K   
Sbjct  535  VIELDPPFAVEDHLHRVGRTARAGEKGESLLFLLPGEEEKYMDYIQPYHPMGWELLKFDK  594

Query  640  NTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGG  699
               +       +  N+  +  + +   N  +   E +       +   +    +R  G  
Sbjct  595  EILMPAFKDVNVNRNDKFIRKDEKSSKNKDVGDKEYEWDTNATTWHLNIE---RRVVGDS  651

Query  700  SY-----KGHVDILAPTVQELAALEKEAQTSFLHLGYLPNQL  736
            ++     KG +  +      ++  +K     FLHLG+L    
Sbjct  652  AFKNLAVKGFISHVRAYATHISQEKKFFNVKFLHLGHLAKSF  693


 Score = 72.9 bits (177),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 25/97 (26%), Positives = 43/97 (44%), Gaps = 7/97 (7%)

Query  4    FSEMGVMPEIAQAVE-EMDWLLPTDIQAESIPLIL--GGG-DVLMAAETGSGKTGAFSIP  59
            F+ +GV   +   +E +M    PT IQ ++IP I+   G  D  + A+TGSGKT ++ +P
Sbjct  145  FASLGVSSLLVSHLEQKMRIKKPTSIQKQAIPQIIGNAGKNDFFIHAQTGSGKTLSYLLP  204

Query  60   VIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
            +I  +   L       +         +   +     Y
Sbjct  205  IISTI---LNMDTHVDRTSGAFALVIAPTRELASQIY  238


>sp|Q9JJY4|DDX20_MOUSE Probable ATP-dependent RNA helicase DDX20 
OS=Mus musculus OX=10090 GN=Ddx20 PE=1 SV=2
Length=825

 Score = 241 bits (616),  Expect = 1e-67, Method: Composition-based stats.
 Identities = 100/484 (21%), Positives = 173/484 (36%), Gaps = 67/484 (14%)

Query  228  FPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY-IVKSQHSGNAQ--------VT  278
            F + +L    L+       F+ P      A+     G  ++    SG  +        + 
Sbjct  65   FESLLLSRPVLE-GLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALD  123

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
                   + + LI+ P+RE+A Q  + I      I    L   + IGG       + L+ 
Sbjct  124  SLILENYSTQILILAPTREIAVQIHSVITAIG--IKMEGLECHVFIGGTPLSQDKTRLKK  181

Query  339  GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQG-YSDFINRMHNQIPQVTSD  397
               I VG+PGR+  L+    LN   +R  +LDEAD LL +G + + IN +++ +P     
Sbjct  182  -CHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASK--  238

Query  398  GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWE  457
                Q++  SAT        L+   M  PT+V L   D     +      VN        
Sbjct  239  ----QMLAVSATYPEVLANALTR-YMRDPTFVRLNPSDPSLIGLKQYYQVVNS-------  286

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
                                        +  I   K ++      +   +QA++F     
Sbjct  287  -------------------------YPLAHKIFEEKTQHLQELFSKVPFNQALVFSNLHS  321

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
               +L      +G         F   C+ G+   ++R   + + K+   R LI TD+ +R
Sbjct  322  RAQHLADILSSKG---------FPTECISGNMNQNQRLDAMAKLKQFHCRVLISTDLTSR  372

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA-TEKEKVWYHVCSS---  633
            GID   V  V+N+ +P + + Y+HRIGR GR   +GL ++     E+E +   +      
Sbjct  373  GIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFGTLGLTVTYCCRGEEENMMMKIAQKCNI  432

Query  634  -RGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQ  692
                            C  W  E++                +  ++     F  + T G 
Sbjct  433  NLLPLPDPIPPGLMEECLNWDVEVKAAMHTYSSPTVATQSPKKQVQKLERAFQSQRTPGN  492

Query  693  KRAA  696
            +  +
Sbjct  493  QTPS  496


 Score = 82.9 bits (203),  Expect = 6e-15, Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 59/155 (38%), Gaps = 22/155 (14%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F  + +   + + +    +  P+ +Q ++IPL   G D+++ A++G+GKT  FS   +  
Sbjct  65   FESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDS  124

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC-----------Q  112
            +       Q             +   +  +  +   +A  I  +GL C            
Sbjct  125  LILENYSTQ---------ILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQD  175

Query  113  SREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRV  147
               +K+ H    + G +K     E+   + G  R+
Sbjct  176  KTRLKKCHIAVGSPGRIK--QLIELDYLNPGSIRL  208


>sp|A5DGM4|SPB4_PICGU ATP-dependent rRNA helicase SPB4 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=SPB4 PE=3 
SV=2
Length=601

 Score = 237 bits (604),  Expect = 1e-67, Method: Composition-based stats.
 Identities = 92/425 (22%), Positives = 150/425 (35%), Gaps = 75/425 (18%)

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKA-----------  289
            + G                   D  +     SG         L    K            
Sbjct  31   SLGFRSMTPVQASTIPLFCGNKDVVVEAVTGSGKTLAFAIPVLERVTKCMKENRGSSGLY  90

Query  290  -LIVEPSRELAEQTLNNIKQFKKYI--DNPKLRELLIIG--GVAARDQLSVLENGVDIVV  344
             +++ P+RELA Q         ++   D P ++  LI+G       D  +  EN   I++
Sbjct  91   GIVISPTRELANQINTVFHTLLQFYPEDQPPIKTQLIVGSLATVREDLNAFAENKPQIII  150

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D  S+  +  S V  +VLDEAD LL   + + +  +  ++P      K+ +  
Sbjct  151  ATPGRLLDFFSSNAVKRSTVEMVVLDEADRLLDISFQNDVVSILKKLP------KQRRTG  204

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGE--DSVPDTVHHVVVPVNPKTDRLWERLGKS  462
            + SATL S     +    M  P  + +     +S P ++    + VNP+T          
Sbjct  205  LFSATLSSAG-DSIFRTGMSNPVKISVNSNKAESKPQSLTVNYMMVNPET----------  253

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
                                          K    +  +   +  + I++  T       
Sbjct  254  ------------------------------KIAVLINMLSTLQYKKCIVYFPTCASVKYF  283

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR----FLICTDVAARG  578
               F +            +   +HG      R + + +F +GDVR     L+ TDVAARG
Sbjct  284  YSVFQKL-----HPLEDVNLTSIHGQLLAKARLKAMNKFTEGDVRTSKHVLLTTDVAARG  338

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK-EKVWYHVCSSRGKG  637
            IDI  V  VI +  P +   ++HR GR GRA ++G AI ++     E  +      +G  
Sbjct  339  IDIPEVDLVIQLDPPTDPDMFLHRCGRTGRANKVGRAIVMLNNNALESDYVDFMEVKGLK  398

Query  638  CYNTR  642
                 
Sbjct  399  MSEVE  403


 Score = 93.7 bits (231),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 3/100 (3%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            A+S+  + P I  A++ + +   T +QA +IPL  G  DV++ A TGSGKT AF+IPV++
Sbjct  15   AWSQASLQPWIHDAIDSLGFRSMTPVQASTIPLFCGNKDVVVEAVTGSGKTLAFAIPVLE  74

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
             V + +K   E +          S   +            
Sbjct  75   RVTKCMK---ENRGSSGLYGIVISPTRELANQINTVFHTL  111


>sp|Q6C193|SPB4_YARLI ATP-dependent rRNA helicase SPB4 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=SPB4 
PE=3 SV=1
Length=626

 Score = 237 bits (605),  Expect = 2e-67, Method: Composition-based stats.
 Identities = 117/550 (21%), Positives = 197/550 (36%), Gaps = 88/550 (16%)

Query  210  KDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKS  269
            KDL +A  +   M+         ++ + +    G ++       G    S     ++V  
Sbjct  6    KDLPVAPWLIDTMEQFGFTDMTPVQASVIPMFAGNKDVIVEAVTG----SGKTIAFLVPL  61

Query  270  QHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQF--------------------  309
                   + +   +     +++V P+RELA QT   ++                      
Sbjct  62   IQRMLNLLKEGPAVSGRVYSVVVSPTRELARQTYEVLQSILEMGCPEADASDKITLEKKK  121

Query  310  ---KKYIDNPKLRELLIIGGV--AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQV  364
                      K+R  LI+GG   +  D  + L +   I+V TPGRL +L+   ++  S  
Sbjct  122  KGKAAPTMPKKIRGQLIMGGDLPSHMDLKNFLRDKPQIIVATPGRLLELLRAPQIKTSAF  181

Query  365  RFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH  424
              LVLDEAD LL  G+   I  + N +P      K+ +  + SAT+    ++ L +  + 
Sbjct  182  DSLVLDEADRLLDLGFGRDITSIINILP------KQRRTGLFSATITDA-IQNLVKIGLR  234

Query  425  FPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEM  484
             P  + +K                  K  +    LG S++  +                 
Sbjct  235  NPVKIVVK--------------VGGKKEQKTPLSLGLSYVVLEPRE--------------  266

Query  485  WSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC  544
                    K  YA+  +  +   +AI++  T       +Q F     G   +   +    
Sbjct  267  --------KLAYALNLLSIYPYRKAIVYLPTCAAVTYYQQMFSHLNEG---REEPYEIYG  315

Query  545  LHGDRKPHERKQNLERF-KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI  603
            LHG      R + L ++ K G    L+ TD+AARG+DI  V  V+ +  P +   + HR 
Sbjct  316  LHGKLPSSTRIKILNKYQKTGAQAILMTTDIAARGLDIPEVDLVVQLDPPSDADTFQHRC  375

Query  604  GRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIE  663
            GR GRA R G AI L+   +E+ +  +   R       +L+   G        +L  E  
Sbjct  376  GRAGRAGRQGQAIVLLHKGREEEYVDLMRVR-----KVKLRPYTGPGSELEGEKLDQEAT  430

Query  664  EHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKEAQ  723
            E        V  D +         V++ +        Y  HV      +Q L      A 
Sbjct  431  ELYTKLRKWVLEDRQRHDQALLSFVSFVR-------FYSKHVAQSIFRIQSLDLPGLAAS  483

Query  724  TSFLHLGYLP  733
               L L  +P
Sbjct  484  YGLLRLPKMP  493


 Score = 88.3 bits (217),  Expect = 8e-17, Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 2/100 (2%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              + ++ V P +   +E+  +   T +QA  IP+  G  DV++ A TGSGKT AF +P+I
Sbjct  3    TDWKDLPVAPWLIDTMEQFGFTDMTPVQASVIPMFAGNKDVIVEAVTGSGKTIAFLVPLI  62

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSA  101
            Q +   LK+      G+       S   +     Y+   +
Sbjct  63   QRMLNLLKEG-PAVSGRVY-SVVVSPTRELARQTYEVLQS  100


>sp|A6ZZY8|DBP7_YEAS7 ATP-dependent RNA helicase DBP7 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DBP7 PE=3 SV=1
Length=742

 Score = 240 bits (611),  Expect = 2e-67, Method: Composition-based stats.
 Identities = 108/582 (19%), Positives = 202/582 (35%), Gaps = 66/582 (11%)

Query  208  NGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAP-----  262
            N  D  +A            F +  + +  +     +   K P      A+ +       
Sbjct  125  NIHDENVAINPSNAPLKGDQFASLGVTSLLVSHLEQKMRIKKPTSIQKQAIPQIIGNAGK  184

Query  263  -DGYIVKSQHSGNAQVTQTKFLP------------NAPKALIVEPSRELAEQTLNNIKQF  309
             D +I     SG         +             +   AL++ P+RELA Q  +     
Sbjct  185  NDFFIHAQTGSGKTLSYLLPIISTILNMDTHVDRTSGAFALVIAPTRELASQIYHVCSTL  244

Query  310  KKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKL---NLSQ-VR  365
                    L   L+IGG   + + + L  G + ++GTPGR+ D +   K+    LSQ +R
Sbjct  245  VSCC--HYLVPCLLIGGERKKSEKARLRKGCNFIIGTPGRVLDHLQNTKVIKEQLSQSLR  302

Query  366  FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR-------LQVIVCSATLHSFDVKKL  418
            ++VLDE D L+  G+ + I+ +   +  +  + ++       L  ++CSATL    V +L
Sbjct  303  YIVLDEGDKLMELGFDETISEIIKIVHDIPINSEKFPKLPHKLVHMLCSATLTDG-VNRL  361

Query  419  SEKIMHFPTWVDLKGED------SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAK  472
                +     +    +         PD +   +  V PK   +      ++I  D + + 
Sbjct  362  RNVALKDYKLISNGTKKDSDIVTVAPDQLLQRITIVPPKLRLVTLAATLNNITKDFIASG  421

Query  473  DNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGG  532
              ++       +          +    +   HK         T      L +        
Sbjct  422  QQSKTLRTIVFVSCSDSVEFHYDAFSGSDGHHKN-------LTGDSVRLLTKGNTMFPCF  474

Query  533  PDKKGHQFSCVCLHGDRKPHERKQNLERF------KKGDVRFLICTDVAARGIDIHGVPY  586
             D +        LHG      R   L+ F       KG    + CTDVA+RG+D+  V  
Sbjct  475  SDSRDPDVVIYKLHGSLSQQMRTSTLQHFARDNEATKGKHLIMFCTDVASRGLDLPHVGS  534

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS-------SRGKGCY  639
            VI +  P   ++++HR+GR  RA   G ++  +   +E+ +               K   
Sbjct  535  VIELDPPFAVEDHLHRVGRTARAGEKGESLLFLLPGEEEKYMDYIQPYHPMGWELLKFDK  594

Query  640  NTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGG  699
               +       +  N+  +  + +   N  +   E +       +   +    +R  G  
Sbjct  595  EILMPAFKDVNVNRNDKFIRKDEKSSKNKDVGDKEYEWDTNATTWHLNIE---RRVVGDS  651

Query  700  SY-----KGHVDILAPTVQELAALEKEAQTSFLHLGYLPNQL  736
            ++     KG +  +      ++  +K     FLHLG+L    
Sbjct  652  AFKNLAVKGFISHVRAYATHISQEKKFFNVKFLHLGHLAKSF  693


 Score = 71.7 bits (174),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 25/97 (26%), Positives = 43/97 (44%), Gaps = 7/97 (7%)

Query  4    FSEMGVMPEIAQAVE-EMDWLLPTDIQAESIPLIL--GGG-DVLMAAETGSGKTGAFSIP  59
            F+ +GV   +   +E +M    PT IQ ++IP I+   G  D  + A+TGSGKT ++ +P
Sbjct  145  FASLGVTSLLVSHLEQKMRIKKPTSIQKQAIPQIIGNAGKNDFFIHAQTGSGKTLSYLLP  204

Query  60   VIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
            +I  +   L       +         +   +     Y
Sbjct  205  IISTI---LNMDTHVDRTSGAFALVIAPTRELASQIY  238


>sp|Q9UHI6|DDX20_HUMAN Probable ATP-dependent RNA helicase DDX20 
OS=Homo sapiens OX=9606 GN=DDX20 PE=1 SV=2
Length=824

 Score = 241 bits (615),  Expect = 2e-67, Method: Composition-based stats.
 Identities = 109/531 (21%), Positives = 193/531 (36%), Gaps = 80/531 (15%)

Query  228  FPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY-IVKSQHSGNAQ--------VT  278
            F + +L    L+       F+ P      A+     G  ++    SG  +        + 
Sbjct  64   FESLLLSRPVLE-GLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALD  122

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
                   + + LI+ P+RE+A Q  + I      I    L   + IGG       + L+ 
Sbjct  123  SLVLENLSTQILILAPTREIAVQIHSVITAIG--IKMEGLECHVFIGGTPLSQDKTRLKK  180

Query  339  GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQG-YSDFINRMHNQIPQVTSD  397
               I VG+PGR+  L+    LN   +R  +LDEAD LL +G + + IN +++ +P     
Sbjct  181  -CHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASK--  237

Query  398  GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWE  457
                Q++  SAT   F    L+ K M  PT+V L   D     +      VN        
Sbjct  238  ----QMLAVSATYPEFLANALT-KYMRDPTFVRLNSSDPSLIGLKQYYKVVNS-------  285

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
                                        +  +   K ++          +QA++F     
Sbjct  286  -------------------------YPLAHKVFEEKTQHLQELFSRIPFNQALVFSNLHS  320

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
               +L      +G         F   C+ G+   ++R   + + K    R LI TD+ +R
Sbjct  321  RAQHLADILSSKG---------FPAECISGNMNQNQRLDAMAKLKHFHCRVLISTDLTSR  371

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA-TEKEKVWYHVCSS---  633
            GID   V  V+N+ +P + + Y+HRIGR GR   +GL ++     E+E +   +      
Sbjct  372  GIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFGTLGLTVTYCCRGEEENMMMRIAQKCNI  431

Query  634  --------RGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFD  685
                       G     +  D       +   + S   + L   I ++E  +++      
Sbjct  432  NLLPLPDPIPSGLMEECVDWDVEVKAAVHTYGIASVPNQPLKKQIQKIERTLQIQ-KAHG  490

Query  686  GKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKEAQTSFLHLGYLPNQL  736
              +   +  +  G S K   +    T Q+L  ++  ++   +     P +L
Sbjct  491  DHMASSRNNSVSGLSVKSKNN----TKQKLP-VKSHSECGIIEKATSPKEL  536


 Score = 82.9 bits (203),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 61/155 (39%), Gaps = 22/155 (14%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F  + +   + + +    +  P+ +Q ++IPL   G D+++ A++G+GKT  FS   +  
Sbjct  64   FESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDS  123

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC-----------Q  112
            +           +  +T     +   +  +  +   +A  I  +GL C            
Sbjct  124  LV---------LENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQD  174

Query  113  SREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRV  147
               +K+ H    + G +K     E+   + G  R+
Sbjct  175  KTRLKKCHIAVGSPGRIK--QLIELDYLNPGSIRL  207


>sp|Q59N29|SPB4_CANAL ATP-dependent rRNA helicase SPB4 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=SPB4 
PE=3 SV=1
Length=631

 Score = 236 bits (603),  Expect = 3e-67, Method: Composition-based stats.
 Identities = 98/463 (21%), Positives = 183/463 (40%), Gaps = 72/463 (16%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYID---NPKLRELLIIG--GVAARDQLSVLENGVDIV  343
            ++++ P+RELA Q  +   Q  +Y+      ++   L++G  G    D    L N   I+
Sbjct  96   SIVLSPTRELANQIQSVFNQVLQYLPEDKGTRINTQLLVGSIGNVREDLNQFLTNQPQIL  155

Query  344  VGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            +GTPGR+ + + S+  +  S +  ++LDEAD LL   +   +  +  ++P      K+ +
Sbjct  156  IGTPGRILEFLGSSQSIKTSSLEIVILDEADKLLDFSFEKDVINILKKLP------KQRR  209

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED------SVPDTVHHVVVPVNPKTDRLW  456
              + SAT+ S     +    M+ P  V +K ++      + P ++    + +NP+     
Sbjct  210  TGLFSATISSAG-NTIFRTGMNNPVKVQVKSKNYFGEQSNSPKSLQLSYMMINPE-----  263

Query  457  ERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTK  516
                                               LK    +  + +++  +AI++  T 
Sbjct  264  -----------------------------------LKITTLLTILSKYQYKKAIVYFPTC  288

Query  517  IDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR----FLICT  572
                +  Q F  +    +          LHG      R + L+ F +GD+      L+ T
Sbjct  289  TSVKHFYQIF-NKVYQQESSDEPLKFFSLHGQLNTKSRLKTLDNFTQGDINLYKHILMTT  347

Query  573  DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT-EKEKVWYHVC  631
            DVAARGIDI  V  VI +  P +   ++HR GR GRA ++G AI ++    +E+ +    
Sbjct  348  DVAARGIDIPDVDLVIQIDPPTDPNVFLHRCGRTGRANKVGRAIVMLNDNCQEEDYIGFM  407

Query  632  SSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYG  691
              +G       +         +   Q+       L   + +     ++ V  + G + Y 
Sbjct  408  EVKGIFLTKQDIPTSSATKNLHENFQI------KLRQYMLEDRARHELAVKSYVGFIRYY  461

Query  692  QKRAAGGGSYKGHVDILA-PTVQELAALEKEAQTSFLHLGYLP  733
             K  A        +D L    +  L  L K  +T ++    +P
Sbjct  462  SKHIASSIFRLATLDYLGIAKMYGLLRLPKMPETKYIDNSIMP  504


 Score = 86.7 bits (213),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 11/123 (9%)

Query  3    AFSEM--GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            A+  +   +   I +A+  M +   T +QA +IPL+ G  DV++ A TGSGKT +F IPV
Sbjct  9    AWENLRYDLHSWIKEAISSMGYPTMTPVQASTIPLLSGNKDVVVEAVTGSGKTLSFVIPV  68

Query  61   IQIVYETLKDQQEGKKGKTTIKTGA------SVLNKWQMNP---YDRGSAFAIGSDGLCC  111
            +Q + + L            +K G       S   +        +++   +     G   
Sbjct  69   LQKISDRLYKPDSDGDLPEPVKRGHMLSIVLSPTRELANQIQSVFNQVLQYLPEDKGTRI  128

Query  112  QSR  114
             ++
Sbjct  129  NTQ  131


>sp|A7TNT1|DBP7_VANPO ATP-dependent RNA helicase DBP7 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=DBP7 PE=3 SV=1
Length=732

 Score = 238 bits (607),  Expect = 6e-67, Method: Composition-based stats.
 Identities = 88/442 (20%), Positives = 161/442 (36%), Gaps = 43/442 (10%)

Query  259  SKAPDGYIVKSQHSGNAQVTQTKFL---PNAPKALIVEPSRELAEQTLNNIKQFKKYIDN  315
            ++   G  +       +++   K      +   A+ + P+RELA Q  + + +       
Sbjct  191  AQTGSGKTLAFALPILSKILSMKTRVDRKSGCFAIFITPTRELATQIYHVLSELTNCC--  248

Query  316  PKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQV----RFLVLDE  371
              L   L+IGG + + + + L  G + ++GTPGR+ D     +    Q+    R++VLDE
Sbjct  249  HYLVPCLLIGGESKKSEKARLRKGCNFIIGTPGRILDHFQNTQSVKEQLAVSLRYVVLDE  308

Query  372  ADGLLSQGYSDFINRMHNQIPQV-------TSDGKRLQVIVCSATLHSFDVKKLSEKIMH  424
            AD L+  G+ + +  +   I  +            R+  I+CSAT     V KL    + 
Sbjct  309  ADKLMELGFEETLTDILKLIHDISLNTSVYPQLPSRIMHILCSAT-SKGSVTKLGNVALQ  367

Query  425  FPTWV------DLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPG  478
                +      +     +VPD +   +  V PK   +        I    +  K      
Sbjct  368  NYKMISNSHVTNELENATVPDQLLQKIAIVPPKLRLVTLAATLDSIHRKHIEQKKKKLDY  427

Query  479  ANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQ----QGGGPD  534
             +   ++      +   +   +  +            +       +   +          
Sbjct  428  VSRTVVFLSCSDSVNFHFEAFSSSD---------ANHRNLVGESARLLTKGNDILPSFDP  478

Query  535  KKGHQFSCVCLHGDRKPHERKQNLERFKK------GDVRFLICTDVAARGIDIHGVPYVI  588
            +    F C  LHG      R   L+ F K      G    L CTDVA+RG+D+  +  VI
Sbjct  479  ENDPDFICYKLHGSLSQQIRSSTLQHFSKTNENVKGKHLVLFCTDVASRGLDLPEIGTVI  538

Query  589  NVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH-VCSSRGKGCYNTRLKEDG  647
             +  P   ++++HRIGR  RA + G ++  +   +E+ +   +     KG        D 
Sbjct  539  ELDPPFAVEDHLHRIGRTARAGKHGESLLFLLPGEEEGYMEYIKPYHTKGWKLVNYTNDL  598

Query  648  GCTIWYNEMQLLSEIEEHLNCT  669
                + N     S+ E   N  
Sbjct  599  LKPSFQNVNVKRSDKETSKNVE  620


 Score = 75.2 bits (183),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 48/103 (47%), Gaps = 6/103 (6%)

Query  4    FSEMGVMPEIAQAV-EEMDWLLPTDIQAESIPLILGGG--DVLMAAETGSGKTGAFSIPV  60
            F  + +  ++   + E+M    PT IQ   +P +L     D+ + A+TGSGKT AF++P+
Sbjct  146  FDSLKIEQQLVNHLNEKMRIQKPTSIQKLVLPQLLSSKNNDLFIHAQTGSGKTLAFALPI  205

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
            +  +  ++K + + K G   I    +   +     Y   S   
Sbjct  206  LSKIL-SMKTRVDRKSGCFAI--FITPTRELATQIYHVLSELT  245


>sp|Q2GZU7|DBP7_CHAGB ATP-dependent RNA helicase DBP7 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=DBP7 PE=3 SV=1
Length=806

 Score = 239 bits (610),  Expect = 7e-67, Method: Composition-based stats.
 Identities = 105/458 (23%), Positives = 182/458 (40%), Gaps = 45/458 (10%)

Query  208  NGKDLGLAFEIPPHM--KNQALFPACVLKNAELKFNFGEEEFKFPPKDGF---VALSKAP  262
            N   LG++  +  H+  K +   P  + KN   +   G+ +     + G    +A     
Sbjct  142  NFHSLGVSRRVAQHLATKLEMKAPTAIQKNTVPQLINGDSDAFLQAETGSGKTLAYLLPI  201

Query  263  DGYIVKSQHSGNAQVTQTKFLPN-APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLREL  321
               I+    + +     TK   N    A+I+ P+REL +Q    +++  +    P L   
Sbjct  202  VHRIMSLSLNEDGTPKDTKVHRNSGLFAIIMAPTRELCKQISVVLEKVLRC--APWLVCT  259

Query  322  LIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGY  380
             +IGG + + + + +  GV+I++ TPGRL D + +T  LN+  VR+LVLDE D ++  G+
Sbjct  260  TVIGGESKKSEKARIRKGVNILIATPGRLADHLDNTKVLNVGTVRWLVLDEGDRMMEMGF  319

Query  381  SDFINRMHNQIPQVTSD-------------GKRLQVIVCSATLHSFDVKKLSEKIMHFPT  427
             D I  +  +I     +               R   ++CSAT+   +V+KL E  +    
Sbjct  320  EDDIKTIVGKIRADKLEKVNAEGVVLDGVLPSRRVTVLCSATM-KMNVQKLGEISLEDAI  378

Query  428  WVDLKGEDS---------VPDTVHH--VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTR  476
             +     +S          P  +    +V P   +   L   L  +  R   V       
Sbjct  379  HIMAAKSESDGDADAVFAAPSQLKQSCIVTPAKLRLVTLIALLKSTFARRGSVMKAIIFI  438

Query  477  PGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKK  536
              A+S +   + +K  K      A++    D +     TK    + +    +        
Sbjct  439  SCADSVDFHYQLLKDTK------AVEPPTPDSS----STKDRNPHTDTTVARAAYITSPA  488

Query  537  GHQFSCVCLHGDRKPHERKQNLERFKKGDVR-FLICTDVAARGIDIHGVPYVINVTLPDE  595
              +     LHG      R   L  F        LI TD+++RG+D+  V  VI       
Sbjct  489  NPKVMLHKLHGSLAQPVRSATLNAFSACKDPAVLITTDISSRGLDVPAVDLVIEYDPAFA  548

Query  596  KQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
              ++VHRIGR  RA R G A+  +    E+ +  + +S
Sbjct  549  VPDHVHRIGRTARAGRAGKAVLFLLPGCEEGYTTILNS  586


 Score = 70.9 bits (172),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 61/164 (37%), Gaps = 23/164 (14%)

Query  4    FSEMGVMPEIAQAV-EEMDWLLPTDIQAESIPLILGG-GDVLMAAETGSGKTGAFSIPVI  61
            F  +GV   +AQ +  +++   PT IQ  ++P ++ G  D  + AETGSGKT A+ +P++
Sbjct  143  FHSLGVSRRVAQHLATKLEMKAPTAIQKNTVPQLINGDSDAFLQAETGSGKTLAYLLPIV  202

Query  62   QIVYE-------TLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC---  111
              +         T KD +   +         +   +               +  L C   
Sbjct  203  HRIMSLSLNEDGTPKDTKVH-RNSGLFAIIMAPTRELCKQISVVLEKVLRCAPWLVCTTV  261

Query  112  ---------QSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCR  146
                     ++R  K  +   AT G +   H       + G  R
Sbjct  262  IGGESKKSEKARIRKGVNILIATPGRLAD-HLDNTKVLNVGTVR  304


>sp|Q0UG00|MS116_PHANO ATP-dependent RNA helicase MSS116, mitochondrial 
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 
/ FGSC 10173) OX=321614 GN=MSS116 PE=3 SV=1
Length=550

 Score = 233 bits (595),  Expect = 8e-67, Method: Composition-based stats.
 Identities = 101/481 (21%), Positives = 165/481 (34%), Gaps = 61/481 (13%)

Query  256  VALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKA-LIVEPSRELAEQTLNNIKQFKKYID  314
            V  +K   G  V         +      P    A L+V P+RELA Q           + 
Sbjct  113  VVQAKTGTGKTVAFLLPAIQNLLAGNMPPRGKVAILVVCPTRELALQIAKECNGVTACLP  172

Query  315  NPKLRELLIIGGVAARDQLSV-LENGVDIVVGTPGRLDDLVSTGKLN--LSQVRFLVLDE  371
              K+      GG +    L   L     I+V TPGRLDD++    +    + ++ +VLDE
Sbjct  173  R-KMECHTAFGGTSRASNLKAFLNGNPTILVATPGRLDDILGEEHVRERFTHLKTVVLDE  231

Query  372  ADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL  431
            AD +L  G++  + ++  +IP         Q +  SATL   +V  +++ ++ FP +  L
Sbjct  232  ADQMLDAGFAPAVKKILRRIP---PKSDGWQGMCFSATLPK-EVLDIAKIVL-FPGFTHL  286

Query  432  KGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
                            V+P      ER+ +  +   +V             E   +    
Sbjct  287  --------------TTVDPNEVPTHERVPQYFLSVPNVGQTFAALSALIQEEHKQDPTDF  332

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
                            +AI+F  T      L   +            QF    LH     
Sbjct  333  ----------------KAIVFGTTANGVGLLYDLY-------KHALPQFRVFELHSRMSQ  369

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
              R +   +FK+     L  +DV  RG+D   V  V+ + LP   + YVHR+GR  RA +
Sbjct  370  PMRTRTTAQFKEATSGILFASDVVGRGMDFPNVGLVVQLGLPSSTEQYVHRVGRTARAGK  429

Query  612  MGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTIS  671
             G A+ LV  EKE  +  +  +     Y   +               + E E  +    +
Sbjct  430  DGRAV-LVLFEKEAFFPRINRTLPIKPYPVDIAA------------KVPEQEAAITRAFA  476

Query  672  QVEPDIKVPV-DEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKEAQTSFLHLG  730
             VE + K      F G      K+     +    V                 +++   +G
Sbjct  477  NVEEEAKAKAYQAFLGYNKTFLKKLQLSTTELVRVANEYSRAMGCPEPPLIEKSTIGKMG  536

Query  731  Y  731
             
Sbjct  537  L  537


 Score = 72.1 bits (175),  Expect = 8e-12, Method: Composition-based stats.
 Identities = 21/97 (22%), Positives = 42/97 (43%), Gaps = 12/97 (12%)

Query  4    FSEMG--VMPEIAQAVEEMDWLLPTDIQAESI---PLILGGGDVLMAAETGSGKTGAFSI  58
            FSE+   +   +   +++M +   + +Q + +   P +    D ++ A+TG+GKT AF +
Sbjct  71   FSELSSVLDKSLLDGLDKMGFEFMSPVQQKVLTELPSLSS--DCVVQAKTGTGKTVAFLL  128

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNP  95
            P IQ +           +GK  I        +  +  
Sbjct  129  PAIQNLL----AGNMPPRGKVAI-LVVCPTRELALQI  160


>sp|Q7S873|DBP7_NEUCR ATP-dependent RNA helicase dbp-7 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=dbp-7 PE=3 SV=1
Length=814

 Score = 239 bits (610),  Expect = 9e-67, Method: Composition-based stats.
 Identities = 107/461 (23%), Positives = 178/461 (39%), Gaps = 48/461 (10%)

Query  208  NGKDLGLAFEIPPHM--KNQALFPACVLKNAELKFNFGEEEFKFPPKDGF---VALSKAP  262
            N   LGL+  +  H+  K +   P  + KN   +    + +     + G    +A     
Sbjct  146  NFLSLGLSRRVSQHLATKLEMKAPTAIQKNTIPQLVKEDSDAFLQAETGSGKTLAYLLPI  205

Query  263  DGYIVKSQHSGNAQVTQTKFLPN-APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLREL  321
               I+   H+ +     TK   N    A+I+ P+REL +Q    +++  +    P L   
Sbjct  206  VHRILALSHNEDGTPKTTKVHRNSGLFAIILAPTRELCKQIAVVLEKVLRC--APWLVCT  263

Query  322  LIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGY  380
             +IGG + + + + +  GV+I++ TPGRL D + +T  L++  VR+LVLDE D ++  G+
Sbjct  264  TVIGGESKKSEKARIRKGVNILIATPGRLTDHLDNTKVLDVGTVRWLVLDEGDRMMEMGF  323

Query  381  SDFINRMHNQIPQVTSDGK-------------RLQVIVCSATLHSFDVKKLSEKIMHFPT  427
             D I  +  +I   T   K             R   ++CSAT+   +V+KL E  +    
Sbjct  324  EDDIKTIVGKIRAGTLQKKNAEGVVLDGVLPSRRVTVLCSATM-KMNVQKLGEISLEDAV  382

Query  428  WVDLKGED--------------SVPDTVHH--VVVPVNPKTDRLWERLGKSHIRTDDVHA  471
             +     D              S P  +    +V P   +   L   L  +  R   V  
Sbjct  383  HITASKSDMEKDAETGAVETAFSAPAQLKQAAIVTPAKLRLVTLIALLKSTFARKGSVMK  442

Query  472  KDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGG  531
                   A+S +   E +K            E +         TK +   +E        
Sbjct  443  AIIFISCADSVDYHFELLKSTTPRAEPEPKPEGE-------APTKPNIH-IESTVAPATY  494

Query  532  GPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR-FLICTDVAARGIDIHGVPYVINV  590
                         LHG      R   L+ F +      LI TD+++RG+D+  V  VI  
Sbjct  495  ITSPANPTVMLHKLHGSLAQPVRSATLKAFSECKDPAVLITTDISSRGLDVPAVELVIEY  554

Query  591  TLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVC  631
                   ++VHRIGR  RA R G A+  +    E+ +  + 
Sbjct  555  DPAFAVPDHVHRIGRTARAGRAGKAVLFLLPGSEEGYISIL  595


 Score = 68.6 bits (166),  Expect = 2e-10, Method: Composition-based stats.
 Identities = 32/163 (20%), Positives = 58/163 (36%), Gaps = 21/163 (13%)

Query  4    FSEMGVMPEIAQAV-EEMDWLLPTDIQAESIPLILGG-GDVLMAAETGSGKTGAFSIPVI  61
            F  +G+   ++Q +  +++   PT IQ  +IP ++    D  + AETGSGKT A+ +P++
Sbjct  147  FLSLGLSRRVSQHLATKLEMKAPTAIQKNTIPQLVKEDSDAFLQAETGSGKTLAYLLPIV  206

Query  62   QIVYETLKDQQEGKKGKTTIKTGAS------VLNKWQMNPYDRGSAFAIGSDGLCC----  111
              +     ++    K     +             +               +  L C    
Sbjct  207  HRILALSHNEDGTPKTTKVHRNSGLFAIILAPTRELCKQIAVVLEKVLRCAPWLVCTTVI  266

Query  112  --------QSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCR  146
                    ++R  K  +   AT G +   H       D G  R
Sbjct  267  GGESKKSEKARIRKGVNILIATPGRLTD-HLDNTKVLDVGTVR  308


>sp|Q6BSM3|SPB4_DEBHA ATP-dependent rRNA helicase SPB4 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 
/ JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=SPB4 PE=3 SV=1
Length=614

 Score = 235 bits (599),  Expect = 9e-67, Method: Composition-based stats.
 Identities = 96/422 (23%), Positives = 173/422 (41%), Gaps = 70/422 (17%)

Query  289  ALIVEPSRELAEQTLNNIKQFKKYI--DNPKLRELLIIGGVA--ARDQLSVLENGVDIVV  344
            ++I+ P+RELA+Q      +  +YI  D   ++  L++G ++    D    L N   I++
Sbjct  96   SIILSPTRELAKQIQTVFDKVLEYIPEDKATIKTQLLVGSLSSVREDIDYFLTNKTHILI  155

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL D +S+  +  + V   VLDEAD LL   +   + ++  Q+P      K+ +  
Sbjct  156  ATPGRLLDFLSSNYVKTNSVEIAVLDEADKLLDISFERDVIKILKQLP------KQRRTG  209

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDS---VPDTVHHVVVPVNPKTDRLWERLGK  461
            + SAT+ S     +    M  P  + +K ++S    P +++   + V P+T         
Sbjct  210  LFSATISSAG-DTIFRTGMANPVKIVVKSKNSKNAAPTSLNVSYMHVEPET---------  259

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
                                           K    +  IK+++  + I++  T     +
Sbjct  260  -------------------------------KISALIALIKDYRFQKCIVYFPTCTSVKH  288

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV----RFLICTDVAAR  577
                F  Q     ++  ++    LHG      R + L+ F +GD       L+ TDVAAR
Sbjct  289  FYSVF--QTLVNVEEEDRYKFFSLHGQLSTKPRLKTLQNFSEGDSMLHKHVLLTTDVAAR  346

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE-KEKVWYHVCSSRGK  636
            GIDI  V  VI +  P +   + HR GR GRA ++G AI ++    +E+ + +    +G 
Sbjct  347  GIDIPDVDLVIQLDPPTDPDVFFHRSGRTGRANKVGQAIVMLNNNSREEDYVNFMEVKGM  406

Query  637  GCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAA  696
               N             N  ++  + ++     + +     ++ +  + G V Y  K  A
Sbjct  407  TMSNMEC---------PNISKIHDKFQKKFRKYMLEDRARHELAIKSYVGFVRYYSKHMA  457

Query  697  GG  698
              
Sbjct  458  SS  459


 Score = 94.4 bits (233),  Expect = 9e-19, Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 9/126 (7%)

Query  7    MGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYE  66
              + P I +A++ + +   T +QA +IPL  G  DV++ A TGSGKT AF IPV+Q +  
Sbjct  15   CDLHPWIKEAIKSLGYPTMTPVQASTIPLFSGNKDVVVEAVTGSGKTLAFVIPVLQKLSN  74

Query  67   TLKDQQEGKKGKTTIKTGA------SVLNKWQMNP---YDRGSAFAIGSDGLCCQSREVK  117
             L +  E  +    +K G       S   +        +D+   +             V 
Sbjct  75   RLYNIDEEGENPEPVKKGHMLSIILSPTRELAKQIQTVFDKVLEYIPEDKATIKTQLLVG  134

Query  118  EWHGCR  123
                 R
Sbjct  135  SLSSVR  140


>sp|O34750|YFML_BACSU Probable ATP-dependent RNA helicase YfmL 
OS=Bacillus subtilis (strain 168) OX=224308 GN=yfmL PE=1 SV=1
Length=376

 Score = 228 bits (581),  Expect = 1e-66, Method: Composition-based stats.
 Identities = 92/388 (24%), Positives = 162/388 (42%), Gaps = 62/388 (16%)

Query  253  DGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKY  312
            DG   ++++P G   K+       + + K     P+A+I+ PSREL  Q    I+ +K  
Sbjct  40   DGKDVIAESPTG-TGKTLAYALPVLERIKPEQKHPQAVILAPSRELVMQIFQVIQDWKA-  97

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
                +LR   +IGG   + Q+  L+    I+VGTPGR+ +L+   KL + +V+ +VLDE 
Sbjct  98   --GSELRAASLIGGANVKKQVEKLKKHPHIIVGTPGRVFELIKAKKLKMHEVKTIVLDET  155

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D L+   + + + ++        +  +  Q++  SATL   + + +  ++   P  + ++
Sbjct  156  DQLVLPEHRETMKQIIK------TTLRDRQLLCFSATL-KKETEDVLRELAQEPEVLKVQ  208

Query  433  GEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKIL  492
               +    V H  +  + +                                         
Sbjct  209  RSKAEAGKVKHQYLICDQRDKV--------------------------------------  230

Query  493  KGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPH  552
                 ++ +   +  QA++F R   +     +             H      LH + K  
Sbjct  231  ---KLLQKLSRLEGMQALVFVRDIGNLSVYAEKL---------AYHHVELGVLHSEAKKM  278

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM  612
            ER + +  F+ G+   L+ TD+AARG+DI  +PYVI+  +PDE   YVHR GR GRA + 
Sbjct  279  ERAKIIATFEDGEFPLLLATDIAARGLDIENLPYVIHADIPDE-DGYVHRSGRTGRAGKE  337

Query  613  GLAISLVATEKEKVWYHVCSSRGKGCYN  640
            G  +SLV   +E     +    G     
Sbjct  338  GNVLSLVTKLEESKLKKMAKKLGVELSE  365


 Score = 76.3 bits (186),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 9/95 (9%)

Query  13   IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQ  72
            I +      +  PT +Q ++  LI+ G DV+  + TG+GKT A+++PV++ +    K  Q
Sbjct  15   IQENWNASGFQKPTPVQEQAAQLIMDGKDVIAESPTGTGKTLAYALPVLERIKPEQKHPQ  74

Query  73   EGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
                         +   +  M  +     +  GS+
Sbjct  75   ---------AVILAPSRELVMQIFQVIQDWKAGSE  100


>sp|P15424|MS116_YEAST ATP-dependent RNA helicase MSS116, mitochondrial 
OS=Saccharomyces cerevisiae (strain ATCC 204508 / 
S288c) OX=559292 GN=MSS116 PE=1 SV=1
Length=664

 Score = 236 bits (601),  Expect = 1e-66, Method: Composition-based stats.
 Identities = 97/425 (23%), Positives = 167/425 (39%), Gaps = 42/425 (10%)

Query  256  VALSKAPDGYIVKSQHSGNAQVTQTKFLPNA-PKALIVEPSRELAEQTLNNIKQFKKYID  314
            +A +K   G            +  TKF      KA+IV P+R+LA Q    +K+      
Sbjct  149  IARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNY  208

Query  315  N-PKLRELLIIGGVAARDQLSVLEN-GVDIVVGTPGRLDDLVST-GKLNLSQVRFLVLDE  371
               K   + ++GG   R  ++ +     +IV+ TPGRL D++          V + VLDE
Sbjct  209  GLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDE  268

Query  372  ADGLLSQGYSDFINRMHNQIPQVTSDG-KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVD  430
            AD LL  G+ D +  +   + +  S     ++ ++ SATL    V+KL+  IM+    + 
Sbjct  269  ADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATL-DDKVQKLANNIMNKKECLF  327

Query  431  LKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIK  490
            L   D      H              ER+ +S + +                E ++ +I 
Sbjct  328  LDTVDKNEPEAH--------------ERIDQSVVIS----------------EKFANSIF  357

Query  491  ILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRK  550
                    +  +     +AIIF  T      L           ++       +  HG   
Sbjct  358  AAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSIL------KNEFKKDLPILEFHGKIT  411

Query  551  PHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAE  610
             ++R   ++RFKK +   L+CTDV ARG+D   V  V+ + +P E  NY+HRIGR  R+ 
Sbjct  412  QNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSG  471

Query  611  RMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTI  670
            + G ++  +  ++      +  ++          E            +  E E+  +  I
Sbjct  472  KEGSSVLFICKDELPFVRELEDAKNIVIAKQEKYEPSEEIKSEVLEAVTEEPEDISDIVI  531

Query  671  SQVEP  675
            S +  
Sbjct  532  SLISS  536


 Score = 80.9 bits (198),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 44/103 (43%), Gaps = 7/103 (7%)

Query  9    VMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSIPVIQIVYE  66
            +  EI +A+  M++   T +Q ++I  IL     DV+  A+TG+GKT AF IP+ Q +  
Sbjct  113  LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN  172

Query  67   TLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGL  109
            T  D Q   K         +      +            + GL
Sbjct  173  TKFDSQYMVK-----AVIVAPTRDLALQIEAEVKKIHDMNYGL  210


>sp|Q56X76|RH39_ARATH DEAD-box ATP-dependent RNA helicase 39 OS=Arabidopsis 
thaliana OX=3702 GN=RH39 PE=2 SV=2
Length=621

 Score = 235 bits (598),  Expect = 1e-66, Method: Composition-based stats.
 Identities = 100/424 (24%), Positives = 172/424 (41%), Gaps = 60/424 (14%)

Query  281  KFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGV  340
            K  P  P+ +++ P+REL+EQ     K    +    + R +L+ GG   R Q   L N +
Sbjct  184  KTKPRRPRTVVLCPTRELSEQVYRVAKSISHHA---RFRSILVSGGSRIRPQEDSLNNAI  240

Query  341  DIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ--VTSDG  398
            D+VVGTPGR+   +  G +    + +LVLDEAD +  +G+   I +    + Q  + ++ 
Sbjct  241  DMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAPLNQRALKTND  300

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER  458
            +  Q ++ +AT+ +  V+KL ++                                   E 
Sbjct  301  QGFQTVLVTATM-TMAVQKLVDE-----------------------------------EF  324

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
             G  H+RT  +H K              E    L+    V      K  + ++FC T   
Sbjct  325  QGIEHLRTSTLHKKIANARHDFIKLSGGE--DKLEALLQVLEPSLAKGSKVMVFCNTLNS  382

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK--KGDVRFLICTDVAA  576
               ++ Y  +         +Q S V  HG+    +R +NL++FK  +GD   L+CTD+AA
Sbjct  383  SRAVDHYLSE---------NQISTVNYHGEVPAEQRVENLKKFKDEEGDCPTLVCTDLAA  433

Query  577  RGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGK  636
            RG+D+  V +V+    P    +Y+HR GR  R    G   SLV+ + + +   +  +   
Sbjct  434  RGLDL-DVDHVVMFDFPKNSIDYLHRTGRTARMGAKGKVTSLVSRKDQMLAARIEEAMRN  492

Query  637  GCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAA  696
                  L  D             + I +    ++ Q+    K          +    R+ 
Sbjct  493  NESLESLTTDNVRRD-----AARTHITQEKGRSVKQIREVSKQRNSRDKPSSSSPPARST  547

Query  697  GGGS  700
            GG +
Sbjct  548  GGKT  551


 Score = 87.1 bits (214),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 0/96 (0%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E+G+  E+  A++E++  +PT+IQ   IP ++    V++ + TGSGKT A+ +P+
Sbjct  111  VENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPI  170

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPY  96
            +Q++ E   +  +  K +           +     Y
Sbjct  171  VQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVY  206


>sp|Q81E85|CSHC_BACCR DEAD-box ATP-dependent RNA helicase CshC 
OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 
/ JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) 
OX=226900 GN=cshC PE=2 SV=1
Length=389

 Score = 228 bits (580),  Expect = 2e-66, Method: Composition-based stats.
 Identities = 86/410 (21%), Positives = 156/410 (38%), Gaps = 70/410 (17%)

Query  235  NAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP---------N  285
               L+  + +  FK   +    A+    +G  V ++       T    LP          
Sbjct  6    QPFLQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKINPEVK  65

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
             P+ +++ P+REL  Q    ++   K+    ++    +IGG   + Q+  L+    ++VG
Sbjct  66   QPQVVVLAPTRELVMQIHEEVQ---KFTAGTEISGASLIGGADIKRQVEKLKKHPRVIVG  122

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            +PGR+ +L+   KL + +V+ +V DE D ++ Q     +  +        S  +  Q++ 
Sbjct  123  SPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIK------STMRDRQLVF  176

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT+     +  +  +   P  V +   +S    V H  +    +    +         
Sbjct  177  FSATMTKAA-EDAARDLAVEPQLVRVTRAES-KSLVEHTYIICERREKNDY---------  225

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                                            VR I      +A+ F       D + + 
Sbjct  226  --------------------------------VRRIMHMGDVKAVAFLNDPFRLDEITEK  253

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
                      K  +     LH +    ER+  +  F+ G +  L+ TD+AARGIDI  + 
Sbjct  254  L---------KFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATDIAARGIDIDDLT  304

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRG  635
            +VI++ LPD    Y+HR GR GR  + G  +SLV  ++E+         G
Sbjct  305  HVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTPQEERKLLQFAKKLG  354


 Score = 87.1 bits (214),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 9/100 (9%)

Query  8    GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYET  67
             + P + QA E+  +   T+IQ ++IP IL G DV+  + TG+GKT A+ +P++  +   
Sbjct  4    DMQPFLQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKINPE  63

Query  68   LKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            +K  Q             +   +  M  ++    F  G++
Sbjct  64   VKQPQV---------VVLAPTRELVMQIHEEVQKFTAGTE  94


>sp|Q6DRI7|DDX51_DANRE ATP-dependent RNA helicase DDX51 OS=Danio 
rerio OX=7955 GN=ddx51 PE=2 SV=1
Length=652

 Score = 234 bits (597),  Expect = 3e-66, Method: Composition-based stats.
 Identities = 98/445 (22%), Positives = 172/445 (39%), Gaps = 51/445 (11%)

Query  260  KAPDGYIVKSQHSGNAQV-------TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKY  312
            +  D  +     SG             +K +    +AL V P++ELA+Q  N    F  Y
Sbjct  239  RPRDVCVSAPTGSGKTLAFVIPVVQALSKRVVRQVRALAVLPTKELAQQVSNV---FSAY  295

Query  313  IDNPKLRELLIIGGVAARDQLSVLEN--------GVDIVVGTPGRLDDLVSTGK-LNLSQ  363
             +   L+ ++I G  +   + + L            DIVV TPGRL D ++     +L  
Sbjct  296  TEGSSLKVVMITGQKSFAAEQTALSEIRGGVSHSMADIVVATPGRLVDHINKNSSFSLQH  355

Query  364  VRFLVLDEADGLLSQGYSDFINRMHNQI---PQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
            +RFL++DEAD ++   +  +++++   +   P  T      + +    T  S    ++  
Sbjct  356  LRFLIIDEADRMIDSMHQSWLSQVTKAVYSTPGETHTSVFRRTVPGPITAASLSPPQIPL  415

Query  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480
            + + F   +    E      +H       P+       L  +  ++ D            
Sbjct  416  QKLLFSATLTQNPEKLQLLDLHQ------PRLFSSTHSLTDNPAQSQDTFHFPQGLSEYY  469

Query  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540
             P  +S+     K    +  +   K   A+ F  ++     L       GG         
Sbjct  470  VPCTFSK-----KPLIILHFLLRLKFSPALCFTNSREGAHRLYLLVKLFGG--------V  516

Query  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600
                      P ER++ L+ F+KG +  LI TD AARGIDI+GV  VIN   P   + Y+
Sbjct  517  EVAEFSSKLSPGERQKTLKDFEKGKIPLLISTDAAARGIDINGVKCVINYDAPQYIRTYI  576

Query  601  HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660
            HR+GR  RA + GLA + +   +EK +  + S  G            G    +   + L 
Sbjct  577  HRVGRTARAGKAGLAFTFLLKVQEKRFLKMVSDAGSP----------GIQKQHVHPEALK  626

Query  661  EIEEHLNCTISQVEPDIKVPVDEFD  685
             +E      ++++   +K   ++  
Sbjct  627  SMESRYEQVLAELGTIVKEENEKKR  651


 Score = 59.8 bits (143),  Expect = 6e-08, Method: Composition-based stats.
 Identities = 29/113 (26%), Positives = 44/113 (39%), Gaps = 22/113 (19%)

Query  8    GVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--------------GDVLMAAETGSGKT  53
            G+ P + + ++         +QAE IP IL                 DV ++A TGSGKT
Sbjct  195  GICPTLLRKLQTNGIQSFFPVQAEVIPAILESVGSGLLVGPGGYRPRDVCVSAPTGSGKT  254

Query  54   GAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
             AF IPV+Q + + +  Q                  +      +  SA+  GS
Sbjct  255  LAFVIPVVQALSKRVVRQ--------VRALAVLPTKELAQQVSNVFSAYTEGS  299


>sp|Q6BPT8|DBP6_DEBHA ATP-dependent RNA helicase DBP6 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP6 PE=3 SV=2
Length=576

 Score = 232 bits (591),  Expect = 5e-66, Method: Composition-based stats.
 Identities = 103/473 (22%), Positives = 190/473 (40%), Gaps = 62/473 (13%)

Query  220  PHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVT-  278
             +++N     A  ++ + L             +   +      D  +  S  SG      
Sbjct  143  KNLRNMGFESAFSVQISVLNLML------KDIERNRLQPDMRGDLLVNASTGSGKTLAYS  196

Query  279  -------QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARD  331
                   QT  +P   +A+I+ P++ L  Q    + Q  K      L  + +   ++ ++
Sbjct  197  IPIIESLQTVKVPRV-RAIILVPTKPLINQVKTTLNQLSK---GTNLSIVSLKNDLSIKE  252

Query  332  QLSVLE-NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ  390
            +   L+ N  DI+V TPGRL D ++ G ++L  +++LV+DEAD LL+Q + ++   + ++
Sbjct  253  EGIKLQTNEPDIIVSTPGRLVDHLTNGYISLKNLQYLVIDEADRLLNQSFQNWCQILISK  312

Query  391  IPQVTSDGKR---------LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV  441
            I + T+  +R         +Q ++ SATL + D  KLS    H P  + +  ++ + +  
Sbjct  313  IDEFTNIKERNISNSWKLNVQKMIFSATLTT-DAGKLSLLKFHKPRLIIVNNKEQLVN--  369

Query  442  HHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI  501
                +P      +L     KS ++   +                               +
Sbjct  370  EMFSLPATLNEFKLQFGSAKSSLKPLILSK---------------------------FLL  402

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHG-DRKPHERKQNLER  560
             ++K+   +IF  TK +  +L    +             +   ++  +     R + L+ 
Sbjct  403  SKNKLANVLIF--TKSNDASLRLSRLLSLIMNKLGSETINIAYINSTNNTTSVRSKILKD  460

Query  561  FKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            F K  +  L+ TD+ ARGIDI  +  VIN  LP+  + YVHR+GR  RA + G A +   
Sbjct  461  FSKQTINILVATDLIARGIDILSITDVINYDLPNSSREYVHRVGRTARANQEGFAYNFCF  520

Query  621  TEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQV  673
             + E  W+        G     ++E    T    E    S  +E L+    QV
Sbjct  521  GKGEAKWFKKL-MAQVGRSEKNIEELELDTKQLIEDNDESMYKESLDELQQQV  572


 Score = 58.2 bits (139),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 27/114 (24%), Positives = 50/114 (44%), Gaps = 13/114 (11%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILG-----------GGDVLMAAETGS  50
            A F    +   + + +  M +     +Q   + L+L             GD+L+ A TGS
Sbjct  130  AEFQNPPLSSLMIKNLRNMGFESAFSVQISVLNLMLKDIERNRLQPDMRGDLLVNASTGS  189

Query  51   GKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            GKT A+SIP+I+ + +T+K  +         K   + +    +N   +G+  +I
Sbjct  190  GKTLAYSIPIIESL-QTVKVPRVRAIILVPTKPLINQVKT-TLNQLSKGTNLSI  241


>sp|Q1K8F7|CYT19_NEUCR ATP-dependent RNA helicase cyt-19, mitochondrial 
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A 
/ CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=cyt-19 PE=1 
SV=1
Length=626

 Score = 233 bits (593),  Expect = 7e-66, Method: Composition-based stats.
 Identities = 100/443 (23%), Positives = 169/443 (38%), Gaps = 63/443 (14%)

Query  213  GLAFEIPPHMKNQALFPACVLKNAELKFNFGE---EEFKFPPKDGFVALSKAPDGYIVKS  269
            G+ +E    +++  + PA   K+   +   G      F  P       +++ PD   +  
Sbjct  92   GMGYENMTEVQSMTISPALKGKDIVAQAKTGTGKTLGFLVPVIQKI--ITQDPD---LAH  146

Query  270  QHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAA  329
            +  G       +   +  +A+I+ P+RELAEQ     ++  K      +     +GG   
Sbjct  147  RFGGK------RARSDDIRAIIISPTRELAEQIGEEARKLVK---GTGIIVQTAVGGTQK  197

Query  330  RDQL-SVLENGVDIVVGTPGRLDDLVSTGK--LNLSQVRFLVLDEADGLLSQGYSDFINR  386
               L    + G  I+VGTPGRL+DL+S     ++  ++  LVLDEAD +L  G+++ + +
Sbjct  198  NAMLYKTRQQGCHILVGTPGRLNDLLSDSHSGIDAPRLSTLVLDEADRMLEVGFNEELRQ  257

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIM--HFPTWVDLKGEDS--VPDTVH  442
            + N +P         Q ++ SAT+   DV  L+   +  +   +V     D     D + 
Sbjct  258  IINYLPDRKVLP--RQTLLYSATIPK-DVVGLARSYIDKNNFEFVQTVKADEVLTHDRIP  314

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
              +VP     +     L                               I K     R   
Sbjct  315  QYIVPCKGFENIYPAMLEL-----------------------------IEKALNESRTNP  345

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
            E    +AI+F  T  +       F +           +    +H     + R +  + FK
Sbjct  346  EALPFKAIVFLPTTAEVIMANAIFKRLQWKFKHIPKTWD---IHSKLTQNARTRAADEFK  402

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
                  L  +DV ARG+D   V +VI   +P  ++ Y+HR+GR GRA + G    +V   
Sbjct  403  NARTGILFSSDVTARGMDFPNVSHVIQTHIPPNREQYIHRLGRTGRANKPGQGWLIVPDI  462

Query  623  KEKVWYHVCSSRGKGCYNTRLKE  645
            +     H   SR  G    R  E
Sbjct  463  E----LHAARSRLPGLPIKRNDE  481


 Score = 89.0 bits (219),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 57/152 (38%), Gaps = 13/152 (9%)

Query  1    MAAFSEM---GVMPEIAQAVEE-MDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
            +  F+++   GV   + +A+   M +   T++Q+ +I   L G D++  A+TG+GKT  F
Sbjct  70   VTRFADLAALGVHENVVRAITHGMGYENMTEVQSMTISPALKGKDIVAQAKTGTGKTLGF  129

Query  57   SIPVIQIVYETLKDQQEGKKGKTT-----IKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
             +PVIQ +     D      GK            S   +      +      +   G+  
Sbjct  130  LVPVIQKIITQDPDLAHRFGGKRARSDDIRAIIISPTRELAEQIGEEARKL-VKGTGIIV  188

Query  112  QSREVKEWHGCRATKGLMKGKHYYEVSCHDQG  143
            Q+            K   +G H   +     G
Sbjct  189  QTAVGGTQKNAMLYKTRQQGCH---ILVGTPG  217


>sp|A6RMZ2|SPB4_BOTFB ATP-dependent rRNA helicase spb4 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=spb4 PE=3 SV=1
Length=626

 Score = 233 bits (593),  Expect = 7e-66, Method: Composition-based stats.
 Identities = 91/454 (20%), Positives = 175/454 (39%), Gaps = 79/454 (17%)

Query  218  IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQV  277
            +   + +        ++ + +    G ++         V  +    G  +        ++
Sbjct  25   VLDAISSMGFEKMTPVQASTIPLFMGNKD--------VVVEAVTGSGKTLSFLIPVVEKL  76

Query  278  TQTKF--LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNP-------------------  316
             + +     +   A+IV P+RELA Q  + +    K+ +                     
Sbjct  77   LRLEEPLKKHHVGAIIVSPTRELATQIHSVLTSLLKFHEPSAEALQPLEEGEKRKPSSTL  136

Query  317  KLRELLIIGGV--AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNL--SQVRFLVLDEA  372
            ++   L++GG    A+D    L+N  ++++ TPGRL +L+S+  ++   S    LVLDEA
Sbjct  137  RVIPQLLLGGTTTPAQDLSRFLKNSPNLLISTPGRLLELLSSPHVHCPQSSFEVLVLDEA  196

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D LL  G+ D + ++  ++P      K+ +  + SA++ S  V ++    +  P  + +K
Sbjct  197  DRLLDLGFKDDLQKILGRLP------KQRRTGLFSASV-SEAVGEIVRVGLRNPVKIAVK  249

Query  433  GEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKIL  492
             + +                      L  S++ T   H                      
Sbjct  250  VKGA------------GGGDKMTPASLQMSYLLTPPTHK--------------------F  277

Query  493  KGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPH  552
                ++ +  E    ++II+  T    D  +               QF  V LHG   P+
Sbjct  278  PALLSLLSQLEPTPQKSIIYLSTCAAVDYFQPLL------EAVLPKQFGLVSLHGKHPPN  331

Query  553  ERKQNLERFKKGDVR-FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
             R++N  ++        L+ TDVAARG+DI  V  V+ +  P + + ++HR GR GRA R
Sbjct  332  VRQRNFSKYVAAVSPTILLTTDVAARGLDIPQVDLVVQIDPPSDPKVFLHRCGRAGRAGR  391

Query  612  MGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
             GL++  +   +E+ +      R       +  E
Sbjct  392  KGLSVIFLQPGREEDYIPFLEIRKTPITPLKRPE  425


 Score = 92.1 bits (227),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 46/103 (45%), Gaps = 6/103 (6%)

Query  2    AAFSEM--GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
             A+  +   +   +  A+  M +   T +QA +IPL +G  DV++ A TGSGKT +F IP
Sbjct  12   RAWDALTPSLAEWVLDAISSMGFEKMTPVQASTIPLFMGNKDVVVEAVTGSGKTLSFLIP  71

Query  60   VIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            V++ +       +E  K         S   +     +   ++ 
Sbjct  72   VVEKLLRL----EEPLKKHHVGAIIVSPTRELATQIHSVLTSL  110


>sp|A7F2S3|SPB4_SCLS1 ATP-dependent rRNA helicase spb4 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=spb4 PE=3 SV=1
Length=625

 Score = 232 bits (592),  Expect = 1e-65, Method: Composition-based stats.
 Identities = 92/460 (20%), Positives = 179/460 (39%), Gaps = 80/460 (17%)

Query  218  IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQV  277
            I   +K+        ++ + +    G ++         V  +    G  +        ++
Sbjct  25   ILDAIKSMGFEKMTPVQASTIPLFMGNKD--------VVVEAVTGSGKTLSFLIPVVEKL  76

Query  278  TQTK--FLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNP-------------------  316
             + +     +   A+IV P+RELA Q  + +     + +                     
Sbjct  77   LRLEEPIKKHHVGAIIVSPTRELATQIHSVLTSLLAFHEPSAGALKPLEEGEKRKPSSTL  136

Query  317  KLRELLIIGGV--AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNL--SQVRFLVLDEA  372
            ++   L++GG    A+D    L+N  ++++ TPGRL +L+S+  ++   S    LVLDEA
Sbjct  137  RVVSQLLLGGTTTPAQDLSRFLKNSPNLLISTPGRLLELLSSPHVHCPQSSFEVLVLDEA  196

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D LL  G+ D + ++ +++P      K+ +  + SA++ S  V ++    +  P  + +K
Sbjct  197  DRLLDLGFKDDLQKILSRLP------KQRRTGLFSASV-SEAVGEIVRVGLRNPVKIAVK  249

Query  433  GEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKIL  492
             + +  D +                 L  S++ T   H                      
Sbjct  250  VKGAGGDKMT-------------PASLQMSYLLTPPTHK--------------------F  276

Query  493  KGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPH  552
                ++ +  +    ++II+  T    D  +               QF+ V LHG   P+
Sbjct  277  PALLSLLSQLQPTPQKSIIYLSTCAAVDYFQPLL------EAVLPKQFALVSLHGKHPPN  330

Query  553  ERKQNLERFKKGDVR-FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
             R++N  ++        L+ TDVAARG+DI  V  V+ +  P + + ++HR GR GRA R
Sbjct  331  VRQRNFSKYVAAVSPTILLTTDVAARGLDIPQVDLVVQIDPPSDPKVFLHRCGRAGRAGR  390

Query  612  MGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTI  651
             GL++  +   +E+ +      R       +  E      
Sbjct  391  KGLSVIFLQPGREEDYIPFLEIRKTPITLFKRPEISTTDD  430


 Score = 94.0 bits (232),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 47/103 (46%), Gaps = 6/103 (6%)

Query  2    AAFSEM--GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
             A+  +   +   I  A++ M +   T +QA +IPL +G  DV++ A TGSGKT +F IP
Sbjct  12   RAWDALTPSLAEWILDAIKSMGFEKMTPVQASTIPLFMGNKDVVVEAVTGSGKTLSFLIP  71

Query  60   VIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            V++ +       +E  K         S   +     +   ++ 
Sbjct  72   VVEKLLRL----EEPIKKHHVGAIIVSPTRELATQIHSVLTSL  110


>sp|Q4WRP2|MS116_ASPFU ATP-dependent RNA helicase mss116, mitochondrial 
OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 
101355 / FGSC A1100 / Af293) OX=330879 GN=mss116 PE=3 SV=1
Length=655

 Score = 232 bits (592),  Expect = 2e-65, Method: Composition-based stats.
 Identities = 85/411 (21%), Positives = 157/411 (38%), Gaps = 45/411 (11%)

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            +++   +  +A+I+ P+RELAEQ     ++   +     +     +GG   R+ L  ++ 
Sbjct  160  RSQASSSDIRAIIISPTRELAEQIAVEARRLAAH---SGVIVQTAVGGTQKREGLRRIQR  216

Query  339  -GVDIVVGTPGRLDDLVST--GKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
             G  +++GTPGRL D++S     +    +  LVLDEAD LL  G+SD I  +   +P   
Sbjct  217  EGCHVLIGTPGRLKDVLSDSYNGVTAPNLSTLVLDEADRLLDDGFSDAIIDIQRLLPD--  274

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMH-FPTWVDLKGEDSVPD--TVHHVVVPVNPKT  452
                  Q ++ SAT+   +V ++  K M     +V    +D VP   TV    V +    
Sbjct  275  PMKVDRQTLMFSATVP-REVMQMVRKTMKPNFKFVKTVRDDEVPTHLTVPQKYVILRGYE  333

Query  453  DRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF  512
            + +   L       +      N RP                              +AI++
Sbjct  334  NAMPALLEFVTKYVEGEKENPNQRPF-----------------------------KAIVY  364

Query  513  CRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICT  572
              + +  + + + F            +     +H       R ++ + F+      L  +
Sbjct  365  FNSTVQTNLVYETFRNIVEQRHHPLRRVRVYEIHSQLTQARRTRSSDFFRAAKSAILFSS  424

Query  573  DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
            DV ARG+D   V +VI V++P ++  Y+HR+GR  RA + G    L    +   +     
Sbjct  425  DVTARGMDFPDVTHVIQVSIPRDRATYIHRLGRTARANKTGEGWVLTHRGELPEFLKQLE  484

Query  633  SRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEE-HLNCTISQVEPDIKVPVD  682
                   N   +     T+   + +L  +         I     ++   + 
Sbjct  485  GIP---LNLDKETFATATVDMTKPELDPKSPATRFIQEIKDAVREVPESLK  532


 Score = 74.4 bits (181),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 14/133 (11%)

Query  1    MAAFSEMG----VMPEIAQAV-EEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGA  55
            +  F+++     V P+I +A+ ++M+    TD+Q++++  IL G DVL  A+TG+GKT A
Sbjct  79   LREFTDLAERGLVDPKIIRAIVKDMNIKTMTDVQSQTLREILQGDDVLAQAKTGTGKTLA  138

Query  56   FSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSRE  115
            F  PV Q +   +KD           +  +S +    ++P          ++ +  ++R 
Sbjct  139  FLTPVFQNI---MKDPSLKGLNWRRSQASSSDIRAIIISPTREL------AEQIAVEARR  189

Query  116  VKEWHGCRATKGL  128
            +    G      +
Sbjct  190  LAAHSGVIVQTAV  202


>sp|Q754J2|DBP7_EREGS ATP-dependent RNA helicase DBP7 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DBP7 PE=3 SV=1
Length=710

 Score = 233 bits (593),  Expect = 3e-65, Method: Composition-based stats.
 Identities = 101/460 (22%), Positives = 166/460 (36%), Gaps = 52/460 (11%)

Query  225  QALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDG----YIVKSQHSGNAQVTQT  280
            Q  F A  ++   L+   G+ + + P K   +A+ +  +G    ++     SG       
Sbjct  133  QDTFEALGVRGTLLEHLTGKMKIQKPTKIQKMAIPEVLNGKADLFLHAQTGSGKTLAFLL  192

Query  281  KFLP------------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
              L             +   A+IV P+RELA Q    I    +      L   L++GG  
Sbjct  193  PVLQTLLSLEQRIDRHSGCFAMIVTPTRELAAQIYGVISTLAQCC--HYLVPCLLVGGER  250

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN----LSQVRFLVLDEADGLLSQGYSDFI  384
             + + + L  G + +VGTPGR+ D +   K+        +R+L+LDE D L+  G+ + +
Sbjct  251  KKSEKARLRKGANFIVGTPGRMLDHLQNTKVAREQLPHSLRYLILDEGDKLMELGFEETL  310

Query  385  NRMHNQIPQVTSDG-------KRLQVIVCSATLHSFDVKKLSEKIMHFPTWV----DLKG  433
              +   +  V  D        +R+  ++CSAT     V KL +  +  P  +        
Sbjct  311  KSILEIVHSVACDNTRFPRLPQRIVHVLCSAT-RQGTVSKLGDIALTDPKVIAASDSTTD  369

Query  434  EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK  493
              +VPD +   +  V PK  RL          +     +  TR         S       
Sbjct  370  VSTVPDQLLQKIAIVPPKL-RLVTLCAAISELSRKAPTETTTRTIVFISCADSVDFHYDV  428

Query  494  GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
                  + ++                  L                      LHG      
Sbjct  429  FSGLGGSHRDLVPG----------TVRELAAGSRALPCFSADSPPNTVFYKLHGSLPQAV  478

Query  554  RKQNLERFKK------GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVG  607
            R   L  F        G    L CTDVA+RG+D+  V  VI +  P   ++++HRIGR  
Sbjct  479  RVATLRHFSSDAAATRGKHLVLFCTDVASRGLDLPRVSTVIEMDPPFAVEDHLHRIGRTA  538

Query  608  RAERMGLAISLVAT-EKEKVWYHVCSSRGKGCYNTRLKED  646
            RA   G ++  +   E+E    H+ +   +G    R   D
Sbjct  539  RAGVAGESLLFLLPGEEEGYMEHIRAHHPRGWELLRYDRD  578


 Score = 80.6 bits (197),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 46/103 (45%), Gaps = 5/103 (5%)

Query  3    AFSEMGVMPEIAQAVE-EMDWLLPTDIQAESIPLILGGG-DVLMAAETGSGKTGAFSIPV  60
             F  +GV   + + +  +M    PT IQ  +IP +L G  D+ + A+TGSGKT AF +PV
Sbjct  135  TFEALGVRGTLLEHLTGKMKIQKPTKIQKMAIPEVLNGKADLFLHAQTGSGKTLAFLLPV  194

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
            +Q +      +Q   +         +   +     Y   S  A
Sbjct  195  LQTLLSL---EQRIDRHSGCFAMIVTPTRELAAQIYGVISTLA  234


>sp|P75172|Y623_MYCPN Probable ATP-dependent RNA helicase MG425 
homolog OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129 
/ Subtype 1) OX=272634 GN=MPN_623 PE=3 SV=1
Length=450

 Score = 226 bits (576),  Expect = 4e-65, Method: Composition-based stats.
 Identities = 80/353 (23%), Positives = 138/353 (39%), Gaps = 55/353 (16%)

Query  281  KFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGV  340
            K      + L+V P+RELAEQ       F K+     L+ + +IGG+    QL  LEN  
Sbjct  68   KPSKGTTQTLVVAPTRELAEQIKTTFINFAKHTH---LKVVSLIGGIPIWQQLKQLENQP  124

Query  341  DIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR  400
            +IVVGT GR+ DL+  G +    +  L++DE D +L +G+   +  + ++I       K 
Sbjct  125  EIVVGTMGRVMDLLERGVIKFEHLEHLIIDEVDLMLDRGFKRKLFDLLSRI------EKF  178

Query  401  LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLG  460
             Q+ V SA+ +   ++            +   G       +       + K         
Sbjct  179  EQIAVYSASYNEETIE--------TAKQITKNGIFLAAPELKQNAPEPDNKL--------  222

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
                                  +         K +     + + +    I+FC TK   D
Sbjct  223  --------------------IDQFVCYLFSNRKKQALYSLVSQTRAKSIIVFCDTKKLVD  262

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF-LICTDVAARGI  579
             L  +          + +      LHGD+    R++NL+ F        L+ TD+  RGI
Sbjct  263  ELCIFL---------RKNDVKTYPLHGDKAQFIRERNLKLFANTTAPIVLVTTDLIGRGI  313

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
             + GV  V+N +     + Y+HR+GR GR    G  I+   + +++ +  +  
Sbjct  314  HVEGVDMVVNYSACVNFETYLHRMGRTGRNNHKGSCITFCTSHEKQAFLKLLE  366


 Score = 84.0 bits (206),  Expect = 9e-16, Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 49/107 (46%), Gaps = 9/107 (8%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F+E+GV P +   +++ +   PT IQ  +IP  L   ++++ + TG+GKT  F IPVI
Sbjct  3    STFNELGVSPALIATLKDNNINQPTTIQQLAIPQFLQHQNLIVHSPTGTGKTAVFGIPVI  62

Query  62   QIVYETLKDQQEGKKGKTTIKTGAS-VLNKWQMNPYDRGSAFAIGSD  107
            + + +        K  K T +T       +           FA  + 
Sbjct  63   ETLLK--------KPSKGTTQTLVVAPTRELAEQIKTTFINFAKHTH  101


>sp|Q8GUG7|RH50_ARATH DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis 
thaliana OX=3702 GN=RH50 PE=2 SV=2
Length=781

 Score = 234 bits (596),  Expect = 5e-65, Method: Composition-based stats.
 Identities = 112/495 (23%), Positives = 185/495 (37%), Gaps = 76/495 (15%)

Query  159  GTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDT--IGCYLD--IDKGHVKFSKNGKDLGL  214
            G+D    G+G      + +  D++ E     DT   G +      +              
Sbjct  333  GSDTNSRGWGDRRSVVYTRDMDDWRERNKTKDTRETGFFSRKTFAEIGCSEDMMKALKEQ  392

Query  215  AFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN  274
             F+ P H++  A  P    K+  +                     ++  G  +       
Sbjct  393  NFDRPAHIQAMAFSPVIDGKSCIIA-------------------DQSGSGKTLAYLVPVI  433

Query  275  AQVTQ------TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
             ++ +      +K  P  P+ +++ P+ ELA Q L N +   K       R +++ GG  
Sbjct  434  QRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISK--SGVPFRSMVVTGGFR  491

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRM  387
             R QL  LE GVD+++ TPGR   L++ G L LS +R  +LDE D L     +   +  +
Sbjct  492  QRTQLENLEQGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQNL  551

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
             N  P         Q +  +ATL               P  +  K  +  PD      V 
Sbjct  552  INSSPVTA------QYLFVTATL---------------PLEIYNKLVEVFPD----CEVV  586

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
            + P+  R+   L +  +             G ++ E   E     K    ++ ++E+ + 
Sbjct  587  MGPRVHRVSNALEEFLVDC----------SGDDNAEKTPETAFQNKKTALLQIMEENPVS  636

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
            + IIFC     C  +E  F +     D+K  Q   +  H       R  N++ F      
Sbjct  637  KTIIFCNKIETCRKVENIFKR----VDRKERQLHVLPFHAALSQESRLTNMQEFTSSQPE  692

Query  568  ----FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER-MGLAISLVATE  622
                FL+CTD A+RGID  GV +V+    P +   YV R+GR  R  R  G A   V  +
Sbjct  693  ENSLFLVCTDRASRGIDFSGVDHVVLFDFPRDPSEYVRRVGRTARGARGKGKAFIFVVGK  752

Query  623  KEKVWYHVCSSRGKG  637
            +  +   +     KG
Sbjct  753  QVGLARRIIERNEKG  767


 Score = 78.6 bits (192),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 64/175 (37%), Gaps = 17/175 (10%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F+E+G   ++ +A++E ++  P  IQA +   ++ G   ++A ++GSGKT A+ +PVI
Sbjct  374  KTFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVI  433

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHG  121
            Q + E                       +          + +          R +    G
Sbjct  434  QRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPF----RSMVVTGG  489

Query  122  CRATKGLMKGKHYYEVSCHDQG----LCR---VGWSTMQA------SLDLGTDKF  163
             R    L   +   +V     G    L     +G S ++        +  G D+F
Sbjct  490  FRQRTQLENLEQGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILFGDDEF  544


>sp|Q0E2Q3|IF4A2_ORYSJ Putative eukaryotic initiation factor 4A-2 
OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0221300 
PE=3 SV=2
Length=416

 Score = 224 bits (571),  Expect = 7e-65, Method: Composition-based stats.
 Identities = 86/406 (21%), Positives = 162/406 (40%), Gaps = 72/406 (18%)

Query  245  EEFKFPPKDGFVALSKAPD----GYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE  300
            ++     + G V L    D         +       + +  +     +AL++ P+ +LA 
Sbjct  69   DKPSAVHQRGIVPLCNGLDIIQQSLFGTTVTLCCGILQRLDYASTECQALVLVPTHDLAH  128

Query  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN  360
            +T N I    +++     +     GG +A +   +L  GV + VGTP  +  ++    L 
Sbjct  129  ETQNVIGVLGQFLSA---KAHAFCGGTSAHEDQQILSTGVQVAVGTPCHVLGMLQGRALC  185

Query  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
               +R  VLDEAD +L +G+ D I+ +   +P  T      Q    SA++ S +  ++  
Sbjct  186  PDHIRMFVLDEADEVL-RGFKDQIHGIIQFLPTKT------QFGFFSASM-SHEALEMCR  237

Query  421  KIMHFPTWVDLKGEDSVPD-TVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGA  479
            K M+ P  + +  ++ +    V    V V  +  +L                        
Sbjct  238  KYMNKPVEIIVPRDEELEGINVKQFYVNVEKEDCKL------------------------  273

Query  480  NSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQ  539
                           +         ++ ++IIF  T+    +L +    +G         
Sbjct  274  ---------------DKLCGLFDTMEITRSIIFVNTRHHAKSLTEKIRGKG---------  309

Query  540  FSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNY  599
            ++   +HG      R + ++ F+ G  R LI TD+  RGID+   P  I   LP +   Y
Sbjct  310  YTVSAIHGGIHQRARDKAVQEFQSGSSRILITTDL--RGIDVLRAPAAIFYDLPTQPVCY  367

Query  600  VHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            +  + + G+  R G+AIS + +  E+V+    S+  K C NT+++E
Sbjct  368  LRHV-QSGQHGRKGVAISFITSTDERVF----STIQKFC-NTQIEE  407


>sp|Q6FU81|MS116_CANGA ATP-dependent RNA helicase MSS116, mitochondrial 
OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 
/ JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=MSS116 
PE=3 SV=1
Length=666

 Score = 231 bits (588),  Expect = 1e-64, Method: Composition-based stats.
 Identities = 90/440 (20%), Positives = 173/440 (39%), Gaps = 61/440 (14%)

Query  255  FVALSKAPDGYIVKSQHSGNAQVTQTKFL-PNAPKALIVEPSRELAEQTLNNIKQF-KKY  312
             +A +K   G            +  TK    N  K++IV P+R+LA Q  + +++   K 
Sbjct  201  IIARAKTGTGKTFAFLLPIFQHLLNTKIDSQNKVKSVIVAPTRDLALQIEDEVRKIHSKN  260

Query  313  IDNPKLRELLIIGGVAARDQLSVLEN-GVDIVVGTPGRLDDLVST-GKLNLSQVRFLVLD  370
                    + ++GG      +  +E     IV+GTPGRL D++   G      V F VLD
Sbjct  261  RKLKAFECVSLVGGTNFDRSIRYIEKVSPSIVIGTPGRLIDVMEKFGNKFFKDVDFKVLD  320

Query  371  EADGLLSQGYSDFINRMHNQIPQV-TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWV  429
            EAD LL  G+ + ++ ++  +  + T+  + ++ ++ SATL    V+ LS  IM+    +
Sbjct  321  EADRLLEIGFKEDLSYINKMLNTLNTNSTEHIRTLLFSATL-DHKVQSLSNDIMNKEECL  379

Query  430  DLK----GEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW  485
             +      E    + +   +V      D L+  +                          
Sbjct  380  YIDTIDENEPQAHEKIDQTLVVGETFADNLYAAI--------------------------  413

Query  486  SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL  545
                     E+      +    ++I+F  T      +     +Q         +      
Sbjct  414  ---------EHIREFGTKTPNYKSILFLPTVKFTKFMATILKRQ--------VKLPIYEF  456

Query  546  HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR  605
            HG     +R + +  FK      L+CTDV ARG+D   +  V+ + LP E  NY+HRIGR
Sbjct  457  HGQIDQKKRTRIVNEFKTMKKGLLVCTDVGARGMDFPNITEVLQIGLPSEIPNYIHRIGR  516

Query  606  VGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEH  665
              R+ + G +++ ++ E+   +  +         N R         +  +  +++++   
Sbjct  517  TARSGKEGSSVTFISKEELPFFEILEDKHNVTIKNIR--------KFEAQPHVMADLSLR  568

Query  666  LNCTISQVEPDIKVPVDEFD  685
            L+ +  +++  I   +  + 
Sbjct  569  LHVSEDELQEIILSVISFYR  588


 Score = 82.1 bits (201),  Expect = 9e-15, Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 42/103 (41%), Gaps = 7/103 (7%)

Query  9    VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGD--VLMAAETGSGKTGAFSIPVIQIVYE  66
            +  ++  ++  M +   T +Q ++I  I+   D  ++  A+TG+GKT AF +P+ Q +  
Sbjct  166  ISRDLYDSISRMGFEQLTPVQQKTIEPIITNSDSDIIARAKTGTGKTFAFLLPIFQHLLN  225

Query  67   TLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGL  109
            T  D Q   K         +      +   D        +  L
Sbjct  226  TKIDSQNKVK-----SVIVAPTRDLALQIEDEVRKIHSKNRKL  263


>sp|Q4HVW2|SPB4_GIBZE ATP-dependent rRNA helicase SPB4 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=SPB4 PE=3 SV=1
Length=637

 Score = 230 bits (586),  Expect = 1e-64, Method: Composition-based stats.
 Identities = 83/377 (22%), Positives = 152/377 (40%), Gaps = 67/377 (18%)

Query  283  LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDN--------------------PKLRELL  322
              +   A+IV P+RELA Q    + +  ++ +                     P +   L
Sbjct  84   KKHHVAAIIVSPTRELAAQIHTVLMKLLQFHEASAEILPHLKDDDEKRPFTTVPAIVPQL  143

Query  323  IIGGVA--ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNL--SQVRFLVLDEADGLLSQ  378
            ++GG     +D    L +  ++++ +PGRL +L+S+  ++   S    LVLDEAD LL  
Sbjct  144  LVGGTTTTVQDLRFFLRHSPNVLISSPGRLVELMSSPHVHCPQSSFEVLVLDEADRLLDL  203

Query  379  GYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVP  438
            G+   + ++ + +P      K+ +  + SA++ S  V ++    +  P  +++K +    
Sbjct  204  GFKPDLQKILSHLP------KQRRTGLFSASV-SEAVGEIIRVGLRNPVKIEVKVK----  252

Query  439  DTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAV  498
                                     I+   +     T        M   A + L     +
Sbjct  253  -------------------------IKGGGILEDRKTPASLQMTYMVKPASQKLPALAEL  287

Query  499  RAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNL  558
                  +  ++I+F  T    D  +         P      F+ V LHG      R++N 
Sbjct  288  LRQLPVRPQRSIVFLSTCAAVDYFQHIL------PLILPEGFALVPLHGKHAAKVREKNF  341

Query  559  ERFKKGDVR-FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAIS  617
             +F        L+ TD+AARG+DI  V  V+ +  P + + ++HR GR GRA R GLA+ 
Sbjct  342  NKFLSSVSPTILLTTDLAARGLDIPQVDLVVQIDAPSDPKVFIHRSGRAGRAGRKGLAVV  401

Query  618  LVATEKEKVWYHVCSSR  634
            ++   +E+ +      R
Sbjct  402  MLHPGREEDYVQFLEIR  418


 Score = 89.8 bits (221),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 42/103 (41%), Gaps = 6/103 (6%)

Query  2    AAFSEMG--VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
             A+  +   +   I  AV  M +   T +QA ++P  +G  DV++ A TGSGKT AF IP
Sbjct  12   RAWDTLNPPLSEWIRDAVATMGFDQMTPVQAATLPHFMGNKDVVVEAVTGSGKTLAFLIP  71

Query  60   VIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            ++Q +        E  K         S   +     +      
Sbjct  72   LVQKLLRL----SEPTKKHHVAAIIVSPTRELAAQIHTVLMKL  110


>sp|Q75AE1|ROK1_EREGS ATP-dependent RNA helicase ROK1 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=ROK1 PE=3 SV=1
Length=569

 Score = 228 bits (580),  Expect = 1e-64, Method: Composition-based stats.
 Identities = 107/516 (21%), Positives = 196/516 (38%), Gaps = 80/516 (16%)

Query  192  IGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPP  251
            IG + D+               L   +  ++          ++   +  +          
Sbjct  118  IGSFEDLVTR----------FKLDKRLLSNLIENNFTEPTPIQCEAIPISL--------Q  159

Query  252  KDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKK  311
                VA +    G  +        QV   K +    K LI+ P++ELA Q  +   +  +
Sbjct  160  NRDIVACAPTGSGKTLAFLIPLLQQVISDKAVGTGVKGLIISPTKELANQIFDECSKLAQ  219

Query  312  YIDNPKLRELLIIGGVAARDQLSVLENGV------DIVVGTPGRLDDLVSTGKLNLSQVR  365
             I   K R L +   + ++   + L+N +      DI++ TP RL D+V +  L+LS V+
Sbjct  220  RIFLEKKRPLSV--ALLSKSLAAKLKNQIVSDKKYDIIISTPLRLIDIVKSESLDLSAVK  277

Query  366  FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF  425
            +L+ DEAD L  + + +  + + +           +  ++ SATL S  V++L++ IM  
Sbjct  278  YLIFDEADKLFDKTFVEQTDDILSACSH-----PNISKVLFSATLPS-SVEELAQSIMTD  331

Query  426  PTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW  485
            P  V +  +++    +   +V    +  +L             V  +   + G   P   
Sbjct  332  PVRVIIGHKEAANTNIEQKLVFCGNEEGKL-------------VAIRQLIQEGMFRP---  375

Query  486  SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL  545
                                    IIF  +      L    +           + +   +
Sbjct  376  ----------------------PVIIFLESITRAKALFHELLYD---------KLNVDVI  404

Query  546  HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR  605
            H +R   +R++ +ERFK GD+  LICTDV ARGID  G+  VIN  +P   Q YVHRIGR
Sbjct  405  HAERTQVQREKIIERFKSGDLWCLICTDVLARGIDFKGINLVINYDVPRSAQAYVHRIGR  464

Query  606  VGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEH  665
             GR  R G A++    +       + +   +         +    +   E +++ + +  
Sbjct  465  TGRGGRKGTAVTFFTKQDAIAVKPIVNVMKQSGCEVAAWMENIAKMTKREKEMIKKGKAF  524

Query  666  LN-CTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGS  700
            ++   IS V   +K    +    +   +KR     +
Sbjct  525  VDRKQISTVPKILKQKKRQQKEMIEASKKRKLAQQA  560


 Score = 96.4 bits (238),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 10/110 (9%)

Query  1    MAAFSEM----GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
            + +F ++     +   +   + E ++  PT IQ E+IP+ L   D++  A TGSGKT AF
Sbjct  118  IGSFEDLVTRFKLDKRLLSNLIENNFTEPTPIQCEAIPISLQNRDIVACAPTGSGKTLAF  177

Query  57   SIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
             IP++Q V  + K    G KG        S   +     +D  S  A   
Sbjct  178  LIPLLQQVI-SDKAVGTGVKG-----LIISPTKELANQIFDECSKLAQRI  221


>sp|Q6CQA1|MS116_KLULA ATP-dependent RNA helicase MSS116, mitochondrial 
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 
/ DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=MSS116 
PE=3 SV=1
Length=685

 Score = 230 bits (586),  Expect = 2e-64, Method: Composition-based stats.
 Identities = 94/404 (23%), Positives = 166/404 (41%), Gaps = 51/404 (13%)

Query  246  EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFL-PNAPKALIVEPSRELAEQTLN  304
            +     ++  VA +K   G  +         +  TK   P A KA+IV P+R+LA Q  +
Sbjct  170  KPILTTENDVVAKAKTGTGKTLAFLAPLFQHLISTKLQNPLAVKAVIVTPTRDLAIQIAS  229

Query  305  NIKQFKKYIDNPK-LRELLIIGGVAARDQLSVLEN-GVDIVVGTPGRLDDLVST-GKLNL  361
             +K+ ++   + K  R L +IGG      L  L     +I+VGTPGR++D++   G    
Sbjct  230  EVKKLQQCNPSLKSYRSLTLIGGTNLDKSLKDLHTLNPNIIVGTPGRINDILDRVGAKYF  289

Query  362  SQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG-KRLQVIVCSATLHSFDVKKLSE  420
              V F VLDEAD LL  G+   ++ +  ++ +  + G + ++ ++ SAT+   +V++L+ 
Sbjct  290  KDVDFKVLDEADTLLQIGFQTELSLISRKLNEFNTQGEEHIRTLLFSATM-DHNVQELAA  348

Query  421  KIMHFPTWVDL----KGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTR  476
             IM+    + +    K +    D++   +V      + +   +                 
Sbjct  349  TIMNKKDCLFIDTVDKNDSEAHDSIDQKLVITKSFAESMVALIQSIESE-----------  397

Query  477  PGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKK  536
                                    + + K  +AI+F  T    D   +   +        
Sbjct  398  ------------------------LLQKKNFKAILFLPTVKFVDFFSETLSE------SL  427

Query  537  GHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEK  596
              +   +  HG     +R + ++RFKK +    +CTDV ARG+    V +V  + +P   
Sbjct  428  TKRIDIIKFHGKIDQKKRTKLVDRFKKTNHGIFVCTDVGARGMHFPSVEHVYQLCVPTSL  487

Query  597  QNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYN  640
             NY+HRIGR  RA   G A   +  E+ K    +         N
Sbjct  488  PNYIHRIGRTARAGESGAATIFLFREELKFVDELRRDTNVVIKN  531


 Score = 71.3 bits (173),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 6/99 (6%)

Query  5    SEMGVMPEIAQAVEEMDWLLPTDIQAESI-PLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
             E  +   + +A+  M +   T +Q  +I P++    DV+  A+TG+GKT AF  P+ Q 
Sbjct  141  EESLLDANVHKAISAMKFESLTPVQQRTIKPILTTENDVVAKAKTGTGKTLAFLAPLFQH  200

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            +  T     + +          +      +         
Sbjct  201  LIST-----KLQNPLAVKAVIVTPTRDLAIQIASEVKKL  234


>sp|Q76PD3|DBP6_SCHPO ATP-dependent RNA helicase dbp6 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp6 
PE=2 SV=1
Length=604

 Score = 228 bits (581),  Expect = 3e-64, Method: Composition-based stats.
 Identities = 94/442 (21%), Positives = 162/442 (37%), Gaps = 74/442 (17%)

Query  245  EEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP-------NAPKALIVEPSRE  297
                          S   D  +  +  SG         +           + +++ P+RE
Sbjct  157  LPLLLQDGRHGPMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRE  216

Query  298  LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL-----ENGVDIVVGTPGRLDD  352
            L  Q     K F+ Y+    L+     G  + R +   L     E  +D++V TPGRL D
Sbjct  217  LTVQV---AKTFEYYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVD  273

Query  353  LV-STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQI--PQVTSDGKR---------  400
             + +    +L  +R++V+DEAD LL Q + D+++ +  +I  P+   +            
Sbjct  274  HIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEISHPKCLQNKSNILDLDQNIS  333

Query  401  ------------------LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH  442
                              LQ +V SATL + D  K++   +H P  V ++ +D   D   
Sbjct  334  PTFLPDIDTLLPYRLPSPLQKLVFSATL-TRDPSKIASLKLHNPRLVLVQNKDMEVDD--  390

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
                                     ++           + + +  ++   K       I 
Sbjct  391  -----------------------GGEIEDDAIVFSVPPTLQEYHVSVSSEKPILLYHLIH  427

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
               +   + F ++      L +         +     FSC          ERK+ + RF 
Sbjct  428  SKNLTNILCFVKSNEAAARLHRLLEL---IHESLNQSFSCGLFTSSLSRDERKKIISRFA  484

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             GD+  L+C+D+ ARGID+     VIN   P   ++YVHRIGR  RA R G A +LV + 
Sbjct  485  TGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARAGREGFAWTLVQSH  544

Query  623  KEKVWYHVCSSRGKGCYNTRLK  644
            +   +  +     +     R+K
Sbjct  545  EGHHFSKLVKQLRRTLPIKRIK  566


 Score = 64.0 bits (154),  Expect = 3e-09, Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 47/118 (40%), Gaps = 18/118 (15%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILG----------GGDVLMAAETGSGKT  53
            FS + +  ++ + +++ +      +QA  +PL+L           GGDV ++A TGSGKT
Sbjct  128  FSSLNISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKT  187

Query  54   GAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
             ++ IP++Q +          +              +  +        +  G+    C
Sbjct  188  LSYVIPIVQCLSH--------RTVPRLRCVVIVPTRELTVQVAKTFEYYMSGAGLQVC  237


>sp|Q6H874|RH47A_ORYSJ DEAD-box ATP-dependent RNA helicase 47A 
OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0636300 PE=2 
SV=1
Length=573

 Score = 227 bits (578),  Expect = 4e-64, Method: Composition-based stats.
 Identities = 105/478 (22%), Positives = 182/478 (38%), Gaps = 48/478 (10%)

Query  200  KGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALS  259
               +  +K+ ++LGL   +   +  + L     +++A +             K   V  S
Sbjct  124  DESLFSAKSFEELGLPPLLIDRLNKEGLTAPTEVQSAAIP--------IISQKHDAVIQS  175

Query  260  KAPDGYIVKSQHSGNAQV--------TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKK  311
                G  +       +++          +    +  +A+IV PSREL  Q +  +++   
Sbjct  176  YTGSGKTLAYLLPILSEIGPLKRPTEQDSSDKRSGVEAVIVAPSRELGMQIVREVEKILG  235

Query  312  YIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLD  370
              D   +++  ++GG     Q   L+ N   IVVGTPGR+ ++ + GKL+    RFLVLD
Sbjct  236  PNDKRLVQQ--LVGGANRSRQEEALKKNKPIIVVGTPGRISEISAAGKLHTHSCRFLVLD  293

Query  371  EADGLLSQGYSDFINRMHNQIPQVTSDGKR-----------LQVIVCSATLHSFDVKKLS  419
            E D LLS  Y + ++R+   + + +    R            Q I+ SAT+  F V + +
Sbjct  294  EVDQLLSFNYREDMHRILEHVGRKSGTSSRDILGPLARRSERQTILVSATIP-FSVIRAA  352

Query  420  EKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGA  479
                H P  V           V    + V        +    S   + +  A D+  P  
Sbjct  353  RSWGHDPVLVR------AMSVVPLESITVPRPVLSQPDANSNSPSNSVNQAAVDSLPPSL  406

Query  480  NSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQ  539
                  S+A    K +   R I   +    I F        ++      +G         
Sbjct  407  EHYYCTSKAQH--KVDTLRRCIHALEAQTVIAFMNNTKPLKDVVFKLEARG---------  455

Query  540  FSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNY  599
                 LHGD     R   L++FK G+ R L+  +++ARG+D+     VIN+ LP +  +Y
Sbjct  456  MKATELHGDLGKLARSTVLKKFKDGEFRVLVTNELSARGLDVPECDLVINLDLPTDSTHY  515

Query  600  VHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQ  657
             HR GR GR  R G  +++    +  V   +              E         +++
Sbjct  516  AHRAGRTGRLGRKGTVVTICEETETFVVRKMRKQLAVPIKPCEFTEGKLLVHKEEDVE  573


 Score = 89.8 bits (221),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 29/133 (22%), Positives = 55/133 (41%), Gaps = 3/133 (2%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +F E+G+ P +   + +     PT++Q+ +IP+I    D ++ + TGSGKT A+ +P++
Sbjct  131  KSFEELGLPPLLIDRLNKEGLTAPTEVQSAAIPIISQKHDAVIQSYTGSGKTLAYLLPIL  190

Query  62   QIV--YETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEW  119
              +   +   +Q    K         +   +  M            +D    Q   V   
Sbjct  191  SEIGPLKRPTEQDSSDKRSGVEAVIVAPSRELGMQIVREVEKILGPNDKRLVQQL-VGGA  249

Query  120  HGCRATKGLMKGK  132
            +  R  + L K K
Sbjct  250  NRSRQEEALKKNK  262


>sp|P47664|Y425_MYCGE Probable ATP-dependent RNA helicase MG425 
OS=Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / 
NCTC 10195 / G37) OX=243273 GN=MG425 PE=3 SV=1
Length=449

 Score = 223 bits (568),  Expect = 5e-64, Method: Composition-based stats.
 Identities = 85/389 (22%), Positives = 155/389 (40%), Gaps = 57/389 (15%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNI  306
             +F  +   +  S    G           ++   K    A   L++ P+REL EQ     
Sbjct  35   PQFLSEKNLIVHSPTGTGKTAAFAIPIIEKL--LKEDQTAKPTLVIAPTRELVEQIKTTF  92

Query  307  KQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRF  366
                K   N KLR + +IGGV A  Q+  ++    I+VGT GR+ DL+    ++ S +  
Sbjct  93   SNIAK---NKKLRIISLIGGVPAWKQIKKIKTNPQIIVGTMGRIMDLLERKAIHFSDLEH  149

Query  367  LVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFP  426
            L++DE D +L +G+   I  +  QI          Q+ V SA+ +   +  ++++I +  
Sbjct  150  LIIDEVDLMLDRGFKKQIFNLLEQINSFK------QIAVYSASYNQEAIN-IAKQITNNG  202

Query  427  TWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWS  486
             ++                                    + + +   NT       +   
Sbjct  203  IFI-----------------------------------GSPEFNKDANTNNDKLIKQFVC  227

Query  487  EAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLH  546
                  K +     IK  ++   I+FC TK   D+L  +          + ++     LH
Sbjct  228  YLFSDQKKQALYSLIKTAQVKSIIVFCDTKKLVDDLHVFL---------RKNELRTFALH  278

Query  547  GDRKPHERKQNLERFKKGDVR-FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR  605
            GD+K   R++NL+ F        L+ TD+  RGI +  +  VIN +     + Y++R+GR
Sbjct  279  GDKKQFIRERNLKIFANTKQPTILVTTDLIGRGIHVEAIDMVINYSACLNLEAYINRMGR  338

Query  606  VGRAERMGLAISLVATEKEKVWYHVCSSR  634
             GR    G  ++   ++++KV+  +    
Sbjct  339  TGRNNHKGTCVTFCTSQEKKVFLKMVEKI  367


 Score = 87.1 bits (214),  Expect = 9e-17, Method: Composition-based stats.
 Identities = 34/142 (24%), Positives = 59/142 (42%), Gaps = 13/142 (9%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            + F E+G+   + + +  +    PT IQ  SIP  L   ++++ + TG+GKT AF+IP+I
Sbjct  3    STFHELGISQTLIETLNALHINKPTKIQQISIPQFLSEKNLIVHSPTGTGKTAAFAIPII  62

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHG  121
            + +   LK+ Q  K          +   +         S  A        + R +    G
Sbjct  63   EKL---LKEDQTAKPT-----LVIAPTRELVEQIKTTFSNIAKN-----KKLRIISLIGG  109

Query  122  CRATKGLMKGKHYYEVSCHDQG  143
              A K + K K   ++     G
Sbjct  110  VPAWKQIKKIKTNPQIIVGTMG  131


>sp|A5DTK7|MS116_LODEL ATP-dependent RNA helicase MSS116, mitochondrial 
OS=Lodderomyces elongisporus (strain ATCC 11503 / 
CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=MSS116 
PE=3 SV=1
Length=692

 Score = 229 bits (584),  Expect = 5e-64, Method: Composition-based stats.
 Identities = 97/448 (22%), Positives = 181/448 (40%), Gaps = 67/448 (15%)

Query  247  FKFPPKDGFVALSKAPDG----YIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQT  302
                 + G V  +K   G    +++ +  S  ++   +    +    +I+ P+R+LA Q 
Sbjct  163  PLLETERGMVCRAKTGTGKTLTFLIPTLQSAVSRKIASGGRSSGVDTVIIVPTRDLALQI  222

Query  303  LNNIKQFKKYIDNPKL-RELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN-  360
             +  ++  + I   +      +IGG+          N  +IV+ TPGRL+  + +     
Sbjct  223  YDEYQKVLRGISGSRKPHISYVIGGM---KNSFNPRNPSEIVIATPGRLEADLRSPLFAS  279

Query  361  -LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG-KRLQVIVCSATLHSFDVKKL  418
              + +++ V DEAD LL  G+   ++ +   I  + SD  + L+ ++ SAT+ +   +  
Sbjct  280  AFTDIKYRVYDEADRLLDVGFEPTLDSIDRSIKMIRSDDAEPLKSLLFSATVDARLDQFA  339

Query  419  SEKIMHFPTWVDLKGED--SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTR  476
             + I     +++   ED   V + +H V+       D+                      
Sbjct  340  KQHINKKYDYINTVPEDDPEVHENIHQVMYKCKDAIDKFGSFFN----------------  383

Query  477  PGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKK  536
                               Y  + +K+    + ++F  T+   + L  Y  +     D  
Sbjct  384  -------------------YVNQLVKDSPDMKMMVFLPTQTAVEFLYSYMSEACHKHDV-  423

Query  537  GHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEK  596
                    LHG R   +R++ L  FK+ D   LI TDVAARGID+ GV +V+ +    E 
Sbjct  424  --DIDIFHLHGKRSASQRQRALSNFKRDDSGILITTDVAARGIDVKGVTHVVQLFPSSEI  481

Query  597  QNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEM  656
             +YVH++GR GRA + G A+  +   +      + S RG               + + ++
Sbjct  482  ADYVHKVGRTGRAGKEGKAVLFITQPEMAYVRRLNSERG---------------VTFEQV  526

Query  657  QLLSEIEEHLNCTISQVEPDIKVPVDEF  684
               SEI+  ++     + PD +V  D F
Sbjct  527  HESSEIDNSIDF-FEGMRPDEQVANDFF  553


 Score = 75.6 bits (184),  Expect = 8e-13, Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 4/107 (4%)

Query  4    FSEMGVMPE-IAQAVEEMDWLLPTDIQAESI-PLILGGGDVLMAAETGSGKTGAFSIPVI  61
            F   G++ + I +A++   +   T IQ +SI PL+     ++  A+TG+GKT  F IP +
Sbjct  131  FKNTGLIDDVILRALDRAHFKDLTPIQQKSIVPLLETERGMVCRAKTGTGKTLTFLIPTL  190

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDG  108
            Q      +    G +                +  YD       G  G
Sbjct  191  QSAVS--RKIASGGRSSGVDTVIIVPTRDLALQIYDEYQKVLRGISG  235


>sp|A3LSJ2|DBP6_PICST ATP-dependent RNA helicase DBP6 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DBP6 PE=3 SV=2
Length=591

 Score = 226 bits (577),  Expect = 7e-64, Method: Composition-based stats.
 Identities = 94/480 (20%), Positives = 189/480 (39%), Gaps = 57/480 (12%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
            SK   +  ++  +  +++      A  ++ A +             K   +      D  
Sbjct  152  SKPFSEFEISPFLLKNLERDNFTTAFSVQIAIMDILL------HDIKRNRLEPDVKGDIL  205

Query  266  IVKSQHSGNAQVTQTKFLP-------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKL  318
            +  +  SG         +           +A+++ P++ L  Q      Q  +      L
Sbjct  206  VNAATGSGKTLAYSIPIIEALHNRVVPRVRAIVLVPTKPLINQVKATFVQLSR---GTNL  262

Query  319  RELLIIGGVAARDQ-LSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLS  377
              + +   V+ +++ + ++ +  DI+V TPGRL + +S   +NL+ ++FLV+DEAD LL+
Sbjct  263  SVVSLRNDVSIKEEGIKIVNSPPDIIVSTPGRLVEHISNKSINLNSLQFLVIDEADRLLN  322

Query  378  QGYSDFINRMHNQIPQVTSDGKRL----QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG  433
            Q + ++   + + +    +  +      Q ++ SATL + D  KLS      P  V +  
Sbjct  323  QSFQNWCQVLISSLEGDVNIAEEWKITPQKLIFSATLTT-DSGKLSALKFQKPRLVIVND  381

Query  434  EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK  493
               + + + +V   ++  T +                               +    I  
Sbjct  382  RKQLVNEIFNVPSSLSEYTIQF-----------------------------GTAKASIKP  412

Query  494  GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
               A   ++ +K+   +IF ++      L +      G   K     +   ++       
Sbjct  413  LILAKYLLENNKLSNVLIFTKSNEASIRLCKLLELMFG---KLHPSMNIAYINSTNNKSA  469

Query  554  -RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM  612
             R + L+ F    +  L+ TD+ ARGIDI  +  VIN  LP+  + YVHR+GR  RA + 
Sbjct  470  IRTKILKDFSTQKINILVATDLIARGIDILSITDVINYDLPNSSREYVHRVGRTARANQT  529

Query  613  GLAISLVATEKEKVWY-HVCSSRGKG-CYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTI  670
            G A +L   + E  W+  + S  G+G     +++ +    I   +  + +E  E L+  +
Sbjct  530  GHAYTLCFGKGEAKWFKKIISDVGRGDKTIEKVEIELKELIVAEDENVYNECLESLSKQV  589


 Score = 56.7 bits (135),  Expect = 6e-07, Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 11/75 (15%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILG-----------GGDVLMAAETGSGK  52
            FSE  + P + + +E  ++     +Q   + ++L             GD+L+ A TGSGK
Sbjct  155  FSEFEISPFLLKNLERDNFTTAFSVQIAIMDILLHDIKRNRLEPDVKGDILVNAATGSGK  214

Query  53   TGAFSIPVIQIVYET  67
            T A+SIP+I+ ++  
Sbjct  215  TLAYSIPIIEALHNR  229


>sp|A5DK47|DBP6_PICGU ATP-dependent RNA helicase DBP6 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP6 PE=3 
SV=2
Length=631

 Score = 227 bits (579),  Expect = 8e-64, Method: Composition-based stats.
 Identities = 98/491 (20%), Positives = 189/491 (38%), Gaps = 64/491 (13%)

Query  200  KGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALS  259
               V FS      GL+  +  ++++     A  ++ + LK    +       +   +   
Sbjct  188  TETVPFSS----FGLSSSMVKNLQSNGFSSAFSVQVSVLKLLLPDM------ESQAIRPD  237

Query  260  KAPDGYIVKSQHSGNA--------QVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKK  311
               D  +  +  SG          +  + + +P   +A+++ P++ L  Q         K
Sbjct  238  IGGDLLVNAATGSGKTLGYAIPIIESLRNRIVPRV-RAIVLVPTKPLISQVKATFAMLSK  296

Query  312  YIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDE  371
               N  L  + +   ++  D+   L+   DI+V TPGRL + ++ G +NL  +R+LV+DE
Sbjct  297  ---NTNLSVVSLRSDISINDEAQRLQVVPDIIVSTPGRLVEHLTNGHINLKSLRYLVIDE  353

Query  372  ADGLLSQGYSDFINRMHNQIPQVT------SDGKRLQVIVCSATLHSFDVKKLSEKIMHF  425
            AD LL+Q + ++   + ++I          +    +Q +V SATL + D  +LS   +  
Sbjct  354  ADRLLNQSFQNWCETLMSRIDSNPISELDQTWRPSVQKLVFSATLTT-DAGRLSMLKLQR  412

Query  426  PTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW  485
            P  + +     + + +    VP   +  +L     +S  +   +                
Sbjct  413  PRLIIVNDRHELVNEL--FTVPATLQEYKLSLGSARSSAKPLVLAK--------------  456

Query  486  SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL  545
                           + E K+   ++F ++    +   +            G   +   L
Sbjct  457  -------------FLMSEQKLVNTLVFAKSN---EASLRLCRLLQLLFRVFGLDVTVSYL  500

Query  546  HG-DRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
            +  +     R + L+ F    V  L+ TD+ ARGIDI  +  VIN  LP+  ++YVHR+G
Sbjct  501  NSTNNAASTRAKILKDFANQTVHILVVTDLIARGIDIATITNVINYDLPNSSRDYVHRVG  560

Query  605  RVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDG--GCTIWYNEMQLLSEI  662
            R  RA + G A ++   + E  W+             +  E G        +E +  + +
Sbjct  561  RTARANQDGEAYTMCFGKGETKWFTQLVREVSRQTEVKDVEKGFRDLVSREDEAKYDTCL  620

Query  663  EEHLNCTISQV  673
            EE        V
Sbjct  621  EELQRQVFEGV  631


 Score = 57.1 bits (136),  Expect = 5e-07, Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 37/76 (49%), Gaps = 11/76 (14%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILG-----------GGDVLMAAETGSGK  52
            FS  G+   + + ++   +     +Q   + L+L            GGD+L+ A TGSGK
Sbjct  193  FSSFGLSSSMVKNLQSNGFSSAFSVQVSVLKLLLPDMESQAIRPDIGGDLLVNAATGSGK  252

Query  53   TGAFSIPVIQIVYETL  68
            T  ++IP+I+ +   +
Sbjct  253  TLGYAIPIIESLRNRI  268


>sp|Q9C8S9|RH48_ARATH Probable DEAD-box ATP-dependent RNA helicase 
48 OS=Arabidopsis thaliana OX=3702 GN=RH48 PE=3 SV=1
Length=798

 Score = 230 bits (587),  Expect = 9e-64, Method: Composition-based stats.
 Identities = 91/439 (21%), Positives = 176/439 (40%), Gaps = 63/439 (14%)

Query  238  LKFNFGEEEFKFPPKDGFVALSKAPDG------YIVKSQHSGNAQVTQTKFLPNA--PKA  289
            LK    ++       DG  AL KA  G      +++ +  +    +   K +       A
Sbjct  349  LKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFA  408

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR-DQLSVLENGVDIVVGTPG  348
            LI+ P+RELA Q     K   K+ D   ++   +IGG   + DQ  +      I++ TPG
Sbjct  409  LILCPTRELASQIAAEGKALLKFHDGIGVQT--LIGGTRFKLDQQRLESEPCQILIATPG  466

Query  349  RLDDLVSTGKLNLSQ---VRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            RL D +       S+   ++  ++DEAD LL  G+   + ++ + +P      ++ Q ++
Sbjct  467  RLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEKIIDCLP------RQRQSLL  520

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT+   +V+++S+ ++        K + S  DT+                      + 
Sbjct  521  FSATIPK-EVRRVSQLVL--------KRDHSYIDTI---------------------GLG  550

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
              + H K          E     +  L  E+    I      + I+FC T +    +   
Sbjct  551  CVETHDKVRQSCIVAPHESHFHLVPHLLKEH----INNTPDYKIIVFCSTGMVTSLMYTL  606

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
              +          + +   +H  +    R +  + FK+ +   L+ +DV+ARG++   V 
Sbjct  607  LRE---------MKLNVREIHARKPQLHRTRVSDEFKESNRLILVTSDVSARGMNYPDVT  657

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
             VI V +P +++ Y+HR+GR GR  + G  + L+A  +      +     +      L  
Sbjct  658  LVIQVGIPSDREQYIHRLGRTGREGKGGEGLLLIAPWERYFLDELKDLPLEPIPAPDLDS  717

Query  646  DGGCTIWYNEMQLLSEIEE  664
                 +  +  ++ + I+E
Sbjct  718  IVKHQVDQSMAKIDTSIKE  736


 Score = 81.3 bits (199),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 45/111 (41%), Gaps = 0/111 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F E  + P   +A+     L  T +Q  ++   L G D L+ A+TG+GK+ AF +P I+ 
Sbjct  330  FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET  389

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSR  114
            V + +   +   K             +        G A     DG+  Q+ 
Sbjct  390  VLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHDGIGVQTL  440


>sp|A4QX49|DBP7_PYRO7 ATP-dependent RNA helicase DBP7 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=DBP7 PE=3 SV=1
Length=825

 Score = 231 bits (588),  Expect = 1e-63, Method: Composition-based stats.
 Identities = 93/458 (20%), Positives = 174/458 (38%), Gaps = 58/458 (13%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNI  306
            +  P  +  +AL++  DG I K         ++     +   A+++ P+REL +Q    +
Sbjct  187  YLLPIVNRILALNQNEDGTISKD-------ASKKIHRNSGLLAIVLAPTRELCKQIATVL  239

Query  307  KQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVR  365
            ++  +    P +    +IGG +   + + +  G++I++ TPGRL D + +T  L++S  R
Sbjct  240  EKLLRC--APWIVSTTVIGGESKHSEKARIRKGINILIATPGRLKDHLDNTKVLDVSLAR  297

Query  366  FLVLDEADGLLSQGYSDFINRMHNQIPQVTSD-------------GKRLQVIVCSATLHS  412
            +L+LDE D ++  G+ D +  + +++ +                   R   ++CSATL  
Sbjct  298  WLILDEGDRMMEMGFMDDLKEIVSKMREAPLKKINPDGIQLEPALPTRRVTVLCSATLDH  357

Query  413  FDVKKLSEKIMH--FPTWVDLKGEDSVPDTVH---------------HVVVPVNPKTDRL  455
              V++L E  +       + + G ++  +                  ++VVP   +   L
Sbjct  358  AQVRRLGEYSLEADKTELIKVDGTEAAKEGDEASEAVFAAPSQLKQSYLVVPAKLRLVTL  417

Query  456  WERLGKSHIRTDDVHAK--------------DNTRPGANSPEMWSEAIKILKGEYAVRAI  501
               L  S  R   V                 D  R     P+  +      K        
Sbjct  418  IALLKSSFARRGSVMKAIIFISCADSVDFHFDLLRSPIKEPKEAAAPPTPKKAPKDAGET  477

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
             +    +      TK   ++ E    +            +   LHG      R   L+ F
Sbjct  478  PDTPPKETK---PTKPVTNHTESTVGKACYITSAANTTITLHKLHGSLAQPVRTATLDSF  534

Query  562  -KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
             K  D   LI TD+++RG+D+  V  VI         ++VHRIGR  RA R G A+  + 
Sbjct  535  SKSKDPSILITTDISSRGLDVPAVDLVIEYDPAFAVADHVHRIGRTARAGRPGKAVLFLQ  594

Query  621  TEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
               E+ +  +           +L +      + + + L
Sbjct  595  PGSEEGYVGLLQKNASTALTPQLYDSVLQAGFSSNIDL  632


 Score = 68.6 bits (166),  Expect = 1e-10, Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 59/169 (35%), Gaps = 26/169 (15%)

Query  2    AAFSEMGVMPEIAQAVE-EMDWLLPTDIQAESIP-LILGGGDVLMAAETGSGKTGAFSIP  59
            A F+ +G+   IAQ +  +++   PT IQ  ++P L+    D  + A+TGSGKT A+ +P
Sbjct  131  ATFAALGLSRRIAQHLSAKLELKAPTAIQHRAVPHLVTTDEDAFLQAQTGSGKTLAYLLP  190

Query  60   VIQIVYETLKDQQEGKKGKTTIKTGAS----------VLNKWQMNPYDRGSAF---AIGS  106
            ++  +   L   ++G   K   K                 +               A   
Sbjct  191  IVNRIL-ALNQNEDGTISKDASKKIHRNSGLLAIVLAPTRELCKQIATVLEKLLRCAPWI  249

Query  107  DGLCCQSREVKEWHGCR---------ATKGLMKGKHYYEVSCHDQGLCR  146
                    E K     R         AT G +K  H       D  L R
Sbjct  250  VSTTVIGGESKHSEKARIRKGINILIATPGRLKD-HLDNTKVLDVSLAR  297


>sp|Q2UST1|MS116_ASPOR ATP-dependent RNA helicase mss116, mitochondrial 
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) 
OX=510516 GN=mss116 PE=3 SV=1
Length=633

 Score = 226 bits (577),  Expect = 2e-63, Method: Composition-based stats.
 Identities = 87/378 (23%), Positives = 134/378 (35%), Gaps = 51/378 (13%)

Query  256  VALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKA--LIVEPSRELAEQTLNNIKQFKKYI  313
            +  +K   G  +         + Q    P   +   LI+ P+RELA+Q   +  Q    +
Sbjct  134  LVQAKTGTGKTLAFLLPTLHCLLQGHSAPPRGQVAILIITPTRELAQQIAKSCDQLTSQL  193

Query  314  DNPKLRELLIIGGVAARDQLSVLENG-VDIVVGTPGRLDDLVSTGKL--NLSQVRFLVLD  370
              P L   + +GG A    L+    G   I+V TPGRL D +S       LS ++ L+LD
Sbjct  194  ARP-LECHIAVGGTARASALARFMKGAPSILVATPGRLKDYLSEPSTAEKLSNIQTLILD  252

Query  371  EADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVD  430
            EAD +L  G+   + R+   IP         Q +  SAT+            +     V 
Sbjct  253  EADTMLESGFLADVKRILQLIP---PKSTGWQGMCFSATVPPK---------VKDVVSVV  300

Query  431  LKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIK  490
            LK   +   T+     P +       ER+ + H+    V                     
Sbjct  301  LKPGYTSISTIEKNETPTH-------ERVPQYHVLIPSVA-------------------D  334

Query  491  ILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRK  550
                  ++  ++     + I+F  T          F Q                +H    
Sbjct  335  TFTTLASLLNLEIKNSSKIIVFGVTANMVALFAAAFSQ-------GLTPLKVFEIHSRLS  387

Query  551  PHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAE  610
               R +    FK+     +  +DV  RG+D   V  VI V LP   + YVHR+GR  RA 
Sbjct  388  QSARTKTTALFKEAATGIMFASDVIGRGMDFPNVDLVIQVGLPSNGEQYVHRVGRTARAG  447

Query  611  RMGLAISLVATEKEKVWY  628
              G AI L+   +     
Sbjct  448  NDGRAIILLTEAESFFMK  465


 Score = 69.8 bits (169),  Expect = 5e-11, Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 5/88 (6%)

Query  9    VMPEIAQAVEEMDWLLPTDIQAESIPLILGGG-DVLMAAETGSGKTGAFSIPVIQIVYET  67
            +  ++ QA++ M++   T +Q   +  +     D L+ A+TG+GKT AF +P +  + + 
Sbjct  99   LDSKLLQALKVMEFEYMTPVQHRVLTELPSWRSDCLVQAKTGTGKTLAFLLPTLHCLLQG  158

Query  68   LKDQQEGKKGKTTIKTGASVLNKWQMNP  95
                    +G+  I    +   +     
Sbjct  159  HSAP---PRGQVAI-LIITPTRELAQQI  182


>sp|Q61R02|DDX55_CAEBR Probable ATP-dependent RNA helicase DDX55 
homolog OS=Caenorhabditis briggsae OX=6238 GN=CBG06798 PE=3 
SV=1
Length=577

 Score = 225 bits (572),  Expect = 3e-63, Method: Composition-based stats.
 Identities = 86/409 (21%), Positives = 145/409 (35%), Gaps = 64/409 (16%)

Query  259  SKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKL  318
            S    G  +         +   +  PN   ALI+ PSREL  Q +N IK F    +  KL
Sbjct  53   SPTGSGKTLAFVLPMMRMIQNARLQPNEIGALILSPSRELCSQIVNVIKPFA---EKMKL  109

Query  319  RELLIIGGVAARDQLSVLENG-VDIVVGTPGRLDDLVSTGKLNLSQ----VRFLVLDEAD  373
                + GG      + + +N  ++I+V TPGRL  ++   K  +++    V+ LV+DEAD
Sbjct  110  NVETVTGGQKVDKNIKMFKNKDINILVATPGRLFQIIQHEKTMIARAMKGVQLLVIDEAD  169

Query  374  GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG  433
                  + D +  + + IP      K+ +  + SAT    +   L    +     V +  
Sbjct  170  RFNEIQFEDHMREILSCIP------KQRRTGLFSAT-QVKEEDDLMVFGLRNAKQVKVSQ  222

Query  434  E--DSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
            E   + P T+ +  V                                             
Sbjct  223  ERNSAAPSTLKNYFVECPADE---------------------------------------  243

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
             K    +  I++    + +IF  +        + F +                +HG    
Sbjct  244  -KTSVCLEFIRQRTDKKVLIFFPSCNSVRYFHKIFERCLTKR-------PLFAVHGKCSN  295

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
              R   ++ F +     +I TDV ARGIDI  + +VI   LP     +VHR GR  R  R
Sbjct  296  PHRAAQIKAFSESTNGVMISTDVMARGIDITDIDWVIQYDLPKHSSWFVHRAGRTARCGR  355

Query  612  MGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660
             G A+ L+ATE+      + +         ++             +++ 
Sbjct  356  DGNALILIATEQLAYVSFLDNHEKVKLEEVKVPTSTSRKAEELRQKMIK  404


 Score = 54.4 bits (129),  Expect = 3e-06, Method: Composition-based stats.
 Identities = 20/65 (31%), Positives = 36/65 (55%), Gaps = 1/65 (2%)

Query  9   VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETL  68
           + PEI + V +  +   TD+Q  +   +L   DV++ + TGSGKT AF +P+++++    
Sbjct  17  LGPEILE-VFDKSYKSFTDVQVLAGTHLLNLSDVVVESPTGSGKTLAFVLPMMRMIQNAR  75

Query  69  KDQQE  73
               E
Sbjct  76  LQPNE  80


>sp|Q8W4E1|RH47_ARATH DEAD-box ATP-dependent RNA helicase 47, 
mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RH47 PE=1 SV=2
Length=551

 Score = 223 bits (568),  Expect = 6e-63, Method: Composition-based stats.
 Identities = 103/459 (22%), Positives = 170/459 (37%), Gaps = 57/459 (12%)

Query  212  LGLAFEIPPHMKNQALFPACVLKNAELKFNF----GEEEFKFP---PKDGFVALSKAPDG  264
            + +  E  P      LF A   +   L  +       E F  P         A+ K  D 
Sbjct  91   MKVVKEKKPAEIVSPLFSAKSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDA  150

Query  265  YIVKSQHSGNAQVTQTKFLP-------------------NAPKALIVEPSRELAEQTLNN  305
             I     SG         L                       +A+IV PSREL  Q +  
Sbjct  151  VIQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVRE  210

Query  306  IKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGTPGRLDDLVSTGKLNLSQV  364
            +++    +    +++  ++GG     Q   L+ N   IVVGTPGR+ ++   GKL+    
Sbjct  211  VEKLLGPVHRRMVQQ--LVGGANRMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHTHGC  268

Query  365  RFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR--------LQVIVCSATLHSFDVK  416
            RFLVLDE D LLS  + + I+R+   + + +  G +         Q I+ SAT+  F V 
Sbjct  269  RFLVLDEVDELLSFNFREDIHRILEHVGKRSGAGPKGEVDERANRQTILVSATVP-FSVI  327

Query  417  KLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTR  476
            + ++   H P  V        P        PV   T    E  G+       +       
Sbjct  328  RAAKSWSHEPVLVQ--ANKVTPLDTVQPSAPVMSLTPTTSEADGQIQTTIQSL-------  378

Query  477  PGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKK  536
                    +  +    K +   R +        I F        ++      +G      
Sbjct  379  -PPALKHYYCISKHQHKVDTLRRCVHALDAQSVIAFMNHSRQLKDVVYKLEARG------  431

Query  537  GHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEK  596
                +   +HGD     R   L++FK G+++ L+  +++ARG+D+     V+N+ LP + 
Sbjct  432  ---MNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTNELSARGLDVAECDLVVNLELPTDA  488

Query  597  QNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRG  635
             +Y HR GR GR  R G  +++    +  +   +    G
Sbjct  489  VHYAHRAGRTGRLGRKGTVVTVCEESQVFIVKKMEKQLG  527


 Score = 92.9 bits (229),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 24/105 (23%), Positives = 50/105 (48%), Gaps = 4/105 (4%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +F E+G+   +  ++E   + +PTD+Q+ ++P I+ G D ++ + TGSGKT A+ +P++
Sbjct  110  KSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPIL  169

Query  62   QIV---YETLKDQQEGKKGKTTIKT-GASVLNKWQMNPYDRGSAF  102
              +    E  +        +T I+    +   +  M         
Sbjct  170  SEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKL  214


>sp|Q59MW2|DBP6_CANAL ATP-dependent RNA helicase DBP6 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP6 
PE=3 SV=2
Length=606

 Score = 224 bits (571),  Expect = 6e-63, Method: Composition-based stats.
 Identities = 95/474 (20%), Positives = 185/474 (39%), Gaps = 63/474 (13%)

Query  220  PHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQ  279
             +++      A  ++ + L     E       +   +   +  D  +  S  SG      
Sbjct  182  KNLEKMGFTEAFSVQISVLNMMLPE------IEAQKLKPDRVGDILVNASTGSGKTLAYS  235

Query  280  TKFLPN-------APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQ  332
               + +         + +I+ P++ L  Q  + + Q         L+   +   V+  D+
Sbjct  236  IPIIESLYRRVVPRVRVIILVPTKPLINQVKSTLLQLS---SGTNLQIAALKNDVSINDE  292

Query  333  LSVLENG-VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDF----INRM  387
               L     DI+V TPGRL + +    +NLS +++L++DEAD LL+Q + ++    ++++
Sbjct  293  KDSLTKSVPDIIVSTPGRLVEHLLNDSINLSSLQYLIIDEADRLLNQSFQNWSNVLLDKI  352

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
             +QI         +Q +V SATL + D  KLS    + P  + +     + + +    VP
Sbjct  353  DSQINIAEVWKLSVQKLVFSATLTT-DAGKLSSLKFYNPRLIIVNDSKQLVNEI--FTVP  409

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
            V     ++   + K+ ++   +                               I  +K+ 
Sbjct  410  VTLSEFKIHLGVAKNSLKPLILTK---------------------------FLISTNKLS  442

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHG-DRKPHERKQNLERFKKGDV  566
              +IF ++      L +          K         ++  + +   R + L++F   +V
Sbjct  443  NVLIFTKSNESSIRLTELLTSLF---QKLSINLKIAFINSTNNRTSIRSKILKQFSNQEV  499

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
              LI TD+ ARGID+  +  VIN  LP+  + YVHR+GR  RA ++G A S    + E  
Sbjct  500  NILITTDLIARGIDVASITDVINYDLPNSSREYVHRVGRTARANQVGYAYSFCFGKGENS  559

Query  627  WYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEI-EEHLNCTISQVEPDIKV  679
            W+   +                  +  N  +L+S+  EE     + +++   K 
Sbjct  560  WFKKLAHEVSRSKEVE-------NVDLNVKELISDRDEEIYQQALHELQQQAKK  606


 Score = 55.9 bits (133),  Expect = 1e-06, Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 11/75 (15%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQ----AESIPLILGGG-------DVLMAAETGS  50
             AF++      + + +E+M +     +Q       +P I           D+L+ A TGS
Sbjct  169  KAFTDFKSSSFMIKNLEKMGFTEAFSVQISVLNMMLPEIEAQKLKPDRVGDILVNASTGS  228

Query  51   GKTGAFSIPVIQIVY  65
            GKT A+SIP+I+ +Y
Sbjct  229  GKTLAYSIPIIESLY  243


>sp|P90897|RDE12_CAEEL DEAD-box ATP-dependent RNA helicase rde-12 
OS=Caenorhabditis elegans OX=6239 GN=rde-12 PE=1 SV=4
Length=959

 Score = 230 bits (587),  Expect = 6e-63, Method: Composition-based stats.
 Identities = 108/433 (25%), Positives = 165/433 (38%), Gaps = 79/433 (18%)

Query  221  HMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQT  280
               N  L P  +     +K+N                + +  DG+ V  Q   +A  T  
Sbjct  381  SWTNSGLHPTILETLKRIKYN-------NVRTIQGAMIPQVLDGHDVLGQAETSAGKTAA  433

Query  281  KFLP-------------------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLREL  321
              LP                   + P ALI+ P+RELA Q    ++    Y  N  +  L
Sbjct  434  FGLPIIDKILRMDEETRNKARQDDGPLALILAPTRELAAQIHEALRT---YCQNTDIIVL  490

Query  322  LIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYS  381
            L  G       L+ + NG DI++GT GR+ D      ++L  +RFLV DEAD LL     
Sbjct  491  LSYGQSDRARSLNEIRNGCDILIGTCGRIMDFTVKSHISLLHLRFLVFDEADRLLQDMKK  550

Query  382  DFINRMHNQIPQV--TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPD  439
            D +  +   I            Q I+ SAT +   V  ++ ++M       L G+D +  
Sbjct  551  DPLGHLGAIIKDAGFMESAATRQTIMTSATFN-ASVMTVANELMK-----RLPGQDEM--  602

Query  440  TVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVR  499
                  + +     RL +R+         +             E  ++  +ILK     +
Sbjct  603  ------IKIVLANGRLSKRVNLEFFECKGL------------AEKNAKLREILKQNVNGK  644

Query  500  AIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLE  559
             +      + IIF + K  CD         G              LHGDR    R++ + 
Sbjct  645  TL------KTIIFVQKKDQCDACAAKLTSGGML---------AQTLHGDRSQDMREKLIN  689

Query  560  RFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD-----EKQNYVHRIGRVGRAERM--  612
             FK   V  L+ TD+ +RGID+  +  VIN  LPD         ++HR GR GR  R   
Sbjct  690  DFKSNRVNLLVTTDLLSRGIDVSDLDRVINFDLPDGDPDQGADTFIHRAGRTGRTGRKEN  749

Query  613  GLAISLVATEKEK  625
            GL +S V  + ++
Sbjct  750  GLCVSFVDPQSDR  762


 Score = 97.9 bits (242),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 51/108 (47%), Gaps = 1/108 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +++  G+ P I + ++ + +     IQ   IP +L G DVL  AET +GKT AF +P+
Sbjct  379  LTSWTNSGLHPTILETLKRIKYNNVRTIQGAMIPQVLDGHDVLGQAETSAGKTAAFGLPI  438

Query  61   IQIVYETLKDQQ-EGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            I  +    ++ + + ++    +    +   +     ++    +   +D
Sbjct  439  IDKILRMDEETRNKARQDDGPLALILAPTRELAAQIHEALRTYCQNTD  486


>sp|Q10PV9|RH47B_ORYSJ DEAD-box ATP-dependent RNA helicase 47B 
OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0219700 PE=2 
SV=1
Length=573

 Score = 223 bits (569),  Expect = 7e-63, Method: Composition-based stats.
 Identities = 105/482 (22%), Positives = 184/482 (38%), Gaps = 56/482 (12%)

Query  200  KGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALS  259
               +  +K+ ++LGL   +   +  + L     +++A +             K   V  S
Sbjct  124  DESLFSAKSFEELGLPPLLIDRLNKEGLSTPTEVQSAAIP--------IISQKHDAVIQS  175

Query  260  KAPDGYIVKSQHSGNAQVTQTKF--------LPNAPKALIVEPSRELAEQTLNNIKQFKK  311
                G  +       +++   K           +  +A+IV PSREL  Q +  +++   
Sbjct  176  YTGSGKTLAYLLPILSEIGPLKRPTEQDGSDKRSGVEAVIVAPSRELGMQIVREVEKILG  235

Query  312  YIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLD  370
              D   +++  ++GG     Q   L+ N   IVVGTPGR+ ++ + GKL+    RFLVLD
Sbjct  236  PNDKRLVQQ--LVGGANRSRQEEALKKNKPLIVVGTPGRISEISAGGKLHTHGCRFLVLD  293

Query  371  EADGLLSQGYSDFINRMHNQIPQVTSDGKR-----------LQVIVCSATLHSFDVKKLS  419
            E D LLS  Y + ++R+   + + +    R            Q I+ SAT+  F V + +
Sbjct  294  EVDQLLSFNYREDMHRILEHVGRKSGTSSRDILGPLARRSERQTILVSATIP-FSVIRAA  352

Query  420  EKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGA  479
                H P  V               VVP++  T      L ++    +      N     
Sbjct  353  RSWGHDPVLVRAMS-----------VVPLDSITVPRP-VLSQTDANPNSPSNSVNQAAVN  400

Query  480  NSPEMWSEAIKILKGEYAVRAIKE----HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDK  535
            + P        I K ++ V  ++      +    I F        ++      +G     
Sbjct  401  SLPPSLEHYYCISKAQHKVDTLRRCIHALEAQTVIAFMNNTKPLKDVVFKLEARG-----  455

Query  536  KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDE  595
                     LHGD     R   L++FK G+ R L+  +++ARG+D+     VIN+ LP +
Sbjct  456  ----MKATELHGDLGKLARSTVLKKFKDGEFRVLVTNELSARGLDVPECDLVINLDLPTD  511

Query  596  KQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNE  655
              +Y HR GR GR  R G  +++    +  V   +              E         +
Sbjct  512  STHYAHRAGRTGRLGRKGTVVTICEETETFVVRKMRKQLAVPIKPCEFTEGKLLVHNEED  571

Query  656  MQ  657
            ++
Sbjct  572  VE  573


 Score = 89.4 bits (220),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 29/133 (22%), Positives = 55/133 (41%), Gaps = 3/133 (2%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +F E+G+ P +   + +     PT++Q+ +IP+I    D ++ + TGSGKT A+ +P++
Sbjct  131  KSFEELGLPPLLIDRLNKEGLSTPTEVQSAAIPIISQKHDAVIQSYTGSGKTLAYLLPIL  190

Query  62   QIV--YETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEW  119
              +   +   +Q    K         +   +  M            +D    Q   V   
Sbjct  191  SEIGPLKRPTEQDGSDKRSGVEAVIVAPSRELGMQIVREVEKILGPNDKRLVQQL-VGGA  249

Query  120  HGCRATKGLMKGK  132
            +  R  + L K K
Sbjct  250  NRSRQEEALKKNK  262


>sp|A2QA23|DBP6_ASPNC ATP-dependent RNA helicase dbp6 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=dbp6 PE=3 SV=1
Length=593

 Score = 223 bits (568),  Expect = 1e-62, Method: Composition-based stats.
 Identities = 102/501 (20%), Positives = 194/501 (39%), Gaps = 67/501 (13%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            +   DLG+   +   +++     A  +++  +      +     P D  ++ +       
Sbjct  121  RKFADLGIDSSLLRVLEDNGYREAFAVQSTVIPLLL--QGPTNHPGDLCISAATG----S  174

Query  267  VKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
             K+       VT  K LP    + LIV P+REL +Q     +          LR    +G
Sbjct  175  GKTLSYVLPLVTALKPLPAPRLRGLIVVPTRELVKQAREACELCAA---GSGLRVASAVG  231

Query  326  GVAARDQLS--------VLENGVDIVVGTPGRLDDLVS-TGKLNLSQVRFLVLDEADGLL  376
             VA +D+            E  VDI++ TPGRL D +  T    L  + +LV+DEAD LL
Sbjct  232  NVAIKDEQRESLPGYVHRSEPNVDILICTPGRLVDHLRYTKGFTLKNLEWLVIDEADRLL  291

Query  377  SQGYSDFINRMHNQIPQVTSD------------------GKRLQVIVCSATLHSFDVKKL  418
            ++ + ++++ +   +    +                    K  + +V SAT+ + DV KL
Sbjct  292  NESFQEWVDVVMTSLDARKAPDAFGFSGNFLSGLGLPIQSKEPRKVVLSATM-TRDVTKL  350

Query  419  SEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPG  478
            +   +  P  V +  + +  +     V P + +   L   L +  +   D   K      
Sbjct  351  NSLRLANPKLVVIGSDAAATEDESGGVAPSDEQF-TLPPTLEEHTVSVGDGSQKPLYLLR  409

Query  479  ANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGH  538
                 +  E                    + ++F ++      L +           +  
Sbjct  410  LLLSHIKLET-------------------KILVFTKSSESASRLARLLALLEPSLSDRIG  450

Query  539  QFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQN  598
                  +  ++    R + L  +++G +  +I TD A+RG+D+  + +V+N  +P     
Sbjct  451  TI----IKSNKSSASR-KTLTAYRRGKISVIIATDRASRGLDLRSLTHVVNYDVPASITT  505

Query  599  YVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
            YVHR+GR  RA + G A +LVA  +E  W+    ++G     TR  + G      + M+ 
Sbjct  506  YVHRVGRTARAGQKGSAWTLVA-HREGKWFASQIAKGSDGKITRSTKVGKVQFKLDNMK-  563

Query  659  LSEIEEHLNCTISQVEPDIKV  679
              E++      +  +E ++K 
Sbjct  564  --EVKARYASALDLLEKEVKT  582


 Score = 66.7 bits (161),  Expect = 4e-10, Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 52/125 (42%), Gaps = 5/125 (4%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGG-----DVLMAAETGSGKTGAF  56
              F+++G+   + + +E+  +     +Q+  IPL+L G      D+ ++A TGSGKT ++
Sbjct  121  RKFADLGIDSSLLRVLEDNGYREAFAVQSTVIPLLLQGPTNHPGDLCISAATGSGKTLSY  180

Query  57   SIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREV  116
             +P++  +      +  G     T +         ++     G   A     +  +  + 
Sbjct  181  VLPLVTALKPLPAPRLRGLIVVPTRELVKQAREACELCAAGSGLRVASAVGNVAIKDEQR  240

Query  117  KEWHG  121
            +   G
Sbjct  241  ESLPG  245


>sp|Q0DVX2|RH50_ORYSJ DEAD-box ATP-dependent RNA helicase 50 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os03g0108600 PE=2 
SV=2
Length=641

 Score = 224 bits (570),  Expect = 2e-62, Method: Composition-based stats.
 Identities = 98/436 (22%), Positives = 161/436 (37%), Gaps = 63/436 (14%)

Query  224  NQALFPACVLKNAELKF--NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTK  281
            ++  F      +  L    +FG           +  + +     I     SG        
Sbjct  238  SRRSFKEIGCSDEILGALRSFGFPRPSHIQAMAYRPVLEGKSCIIGDQSGSGKTLAYLCP  297

Query  282  FL---------------PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
             +               P  P+ +++ P+ ELA Q LNN +   K       R ++  GG
Sbjct  298  VVQNLRKEEVEGLHRSSPRNPRVVVLTPTAELASQVLNNCRSISK--SGVPFRSMVATGG  355

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFIN  385
               + QL  L+  +D+++ TPGR   L+  G + L+ +R +VLDE D L   + +   ++
Sbjct  356  FRQKTQLESLDQELDVLIATPGRFLYLLQEGFVQLNNLRCVVLDEVDILYGEESFEQVLH  415

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
            ++    P  T      Q +  +ATL                    L   + V +T     
Sbjct  416  QLITVAPLTT------QYLFVTATLP-------------------LDIYNKVVETFPDCE  450

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
            + + P   R   RL +  +             G ++ E   E     K    V+ I+E  
Sbjct  451  LIMGPGVHRTSSRLEEILVDC----------SGDDNEEKNPETAFSNKKSALVKIIEESP  500

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK--  563
            + + IIFC     C  +E    +     D+K  Q   +  H      +R  N++ F    
Sbjct  501  VRKTIIFCNKIETCRKVENALRR----VDRKASQIKVLPFHAALDQQQRIANIKEFLNKQ  556

Query  564  -GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR-AERMGLAISLVAT  621
              D  FL+CTD A+RGID   V +V+    P +   YV R+GR  R A   G A      
Sbjct  557  TADSMFLVCTDRASRGIDFANVNHVVLFDYPRDPSEYVRRVGRTARGASGNGKAFVFAVG  616

Query  622  EKEKVWYHVCSSRGKG  637
            ++  +   V     KG
Sbjct  617  KQVSLARRVMERNIKG  632


 Score = 77.9 bits (190),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 32/142 (23%), Positives = 52/142 (37%), Gaps = 4/142 (3%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +F E+G   EI  A+    +  P+ IQA +   +L G   ++  ++GSGKT A+  PV+
Sbjct  240  RSFKEIGCSDEILGALRSFGFPRPSHIQAMAYRPVLEGKSCIIGDQSGSGKTLAYLCPVV  299

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHG  121
            Q +    K++ EG    +       VL         +               R +    G
Sbjct  300  QNL---RKEEVEGLHRSSPRNPRVVVLTPTA-ELASQVLNNCRSISKSGVPFRSMVATGG  355

Query  122  CRATKGLMKGKHYYEVSCHDQG  143
             R    L       +V     G
Sbjct  356  FRQKTQLESLDQELDVLIATPG  377


>sp|Q5APM7|MS116_CANAL ATP-dependent RNA helicase MSS116, mitochondrial 
OS=Candida albicans (strain SC5314 / ATCC MYA-2876) 
OX=237561 GN=MSS116 PE=3 SV=2
Length=668

 Score = 224 bits (571),  Expect = 2e-62, Method: Composition-based stats.
 Identities = 102/439 (23%), Positives = 173/439 (39%), Gaps = 62/439 (14%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNI  306
              F  + G V  +K   G  +           + +        +++ P+R+LA Q     
Sbjct  120  PIFNTEKGLVCRAKTGTGKTLAFAVPTLQYAYKNRGK--GVSTVVLVPTRDLAFQIEEEY  177

Query  307  KQF---KKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRL---DDLVSTGKLN  360
            ++     KY + P L   LIIGG   +          +IV+ TPGRL             
Sbjct  178  RKLISHLKYNERPNLE--LIIGG---QRTSFNPRRPAEIVIATPGRLEKELQTDRKLAKC  232

Query  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
             S V + + DEAD LL  G+   +N +   + +V +  K ++ ++ SAT+    + + S+
Sbjct  233  FSNVTYRIYDEADRLLDVGFESVLNEIDGLLYKVRTTPKPIKSLLFSATV-DEAISEFSK  291

Query  421  KIMHFPTWVDL----KGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTR  476
            K +H P +  L    K +  +P+ +H  ++      D++   L + H             
Sbjct  292  KHIH-PEYEFLNTVTKDDLEIPENIHQQLIECTDGIDKVNVSLSELHG------------  338

Query  477  PGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQ--QGGGPD  534
                                    +K+H   + I+F  TK   D   +Y          +
Sbjct  339  -----------------------IMKQHNDYKVIVFLPTKTAVDWFYEYITNALDDELFE  375

Query  535  KKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD  594
                      LHG R   +R   L+ FK      LI TDVAARGID+  V  V+ +    
Sbjct  376  LFSKPPRVFMLHGGRSVRQRSAALKGFKVAKKGILISTDVAARGIDVKDVTNVMQMFPSV  435

Query  595  EKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYN  654
            E  +Y+H++GR GRA + G A SL AT  E  +  +   + K  +   ++ +       N
Sbjct  436  EIADYIHKVGRTGRAGKKGKA-SLFATPAELPYVSLLKRKRKVKFQEVIQSEK-----LN  489

Query  655  EMQLLSEIEEHLNCTISQV  673
               ++ +IE  L+ T   +
Sbjct  490  SSNIIDQIESPLDSTKEFL  508


 Score = 68.2 bits (165),  Expect = 2e-10, Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 13/104 (13%)

Query  4    FSEMG----VMPEIAQAVEEMDWLLPTDIQAESI-PLILGGGDVLMAAETGSGKTGAFSI  58
            F +      +   I  ++ + D+   T IQ +S+ P+      ++  A+TG+GKT AF++
Sbjct  85   FEDFKGKGYIHDSIINSLHKNDFKELTPIQQKSLVPIFNTEKGLVCRAKTGTGKTLAFAV  144

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            P +Q  Y+         +GK                  +     
Sbjct  145  PTLQYAYKN--------RGKGVSTVVLVPTRDLAFQIEEEYRKL  180


>sp|O80792|RH33_ARATH Putative DEAD-box ATP-dependent RNA helicase 
33 OS=Arabidopsis thaliana OX=3702 GN=RH33 PE=3 SV=1
Length=845

 Score = 227 bits (579),  Expect = 2e-62, Method: Composition-based stats.
 Identities = 96/550 (17%), Positives = 197/550 (36%), Gaps = 109/550 (20%)

Query  151  TMQASLDLGTDKFGFGFGGTGKKSH---NKQFDNYGEEFTM-HDTIGCYLDIDKGHVKFS  206
            T + + ++  ++          +      +  DN  EE    HD+I      D+  +   
Sbjct  326  TKRVNRNVTDEELYPPLDINRVREDLSKKQSVDNVMEEKQEPHDSIYSAKRFDESCIS--  383

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDG--  264
                           +    +     +++A L              DG  AL KA  G  
Sbjct  384  ---------PLTLKALSASGIVKMTRVQDATLS----------ECLDGKDALVKAKTGTG  424

Query  265  ----YIVKSQHSGNAQVTQTKFLPNA--PKALIVEPSRELAEQTLNNIKQFKKYIDNPKL  318
                +++ +  +    +   K +        LI+ P+RELA Q     K   K  ++  +
Sbjct  425  KSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLK--NHDGI  482

Query  319  RELLIIGGVAAR-DQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQ---VRFLVLDEADG  374
                +IGG   R DQ  +      I++ TPGRL D +       S+   ++  ++DEAD 
Sbjct  483  GVQTLIGGTRFRLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADL  542

Query  375  LLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIM-HFPTWVDLKG  433
            LL  G+   + ++ + +P      ++ Q ++ SAT+   +V+++S+ ++    +++D  G
Sbjct  543  LLDLGFKRDVEKIIDCLP------RQRQSLLFSATIPK-EVRRVSQLVLKRDHSYIDTIG  595

Query  434  ED--SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
                   D V    +    ++                                       
Sbjct  596  LGCVETHDKVKQSCIVAPHESH------------------------------------FH  619

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
            L        I      + I+FC T +    +     +          + +   +H  +  
Sbjct  620  LVPHLLKEHINNMPDYKIIVFCSTGMVTSLMYTLLRE---------MKLNVREIHARKPQ  670

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
              R    + FK+ +   L+ +DV+ARG++   V  VI V +P +++ Y+HR+GR GR  +
Sbjct  671  LHRTCVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGK  730

Query  612  MGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTIS  671
             G  + L+A  +      +     +      L                S ++  ++ +++
Sbjct  731  GGKGLLLIAPWERYFLDELKDLPLEPIPAPDLD---------------SRVKHQVDQSMA  775

Query  672  QVEPDIKVPV  681
            +++  IK   
Sbjct  776  KIDTSIKEAA  785


 Score = 81.7 bits (200),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 45/111 (41%), Gaps = 0/111 (0%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F E  + P   +A+     +  T +Q  ++   L G D L+ A+TG+GK+ AF +P I+ 
Sbjct  377  FDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET  436

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSR  114
            V + +   +   K             +        G A     DG+  Q+ 
Sbjct  437  VLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDGIGVQTL  487


>sp|Q6P9R1|DDX51_MOUSE ATP-dependent RNA helicase DDX51 OS=Mus 
musculus OX=10090 GN=Ddx51 PE=1 SV=1
Length=639

 Score = 223 bits (569),  Expect = 2e-62, Method: Composition-based stats.
 Identities = 106/464 (23%), Positives = 174/464 (38%), Gaps = 89/464 (19%)

Query  260  KAPDGYIVKSQHSGNAQVTQTKFLPN-------APKALIVEPSRELAEQTLNNIKQFKKY  312
            +  D  +     SG         +           +AL+V P++ELA+Q       F  Y
Sbjct  220  QPSDLCVSAPTGSGKTLAFVIPVVQALLHRVVCHIRALVVLPTKELAQQVSKV---FNIY  276

Query  313  IDNPKLRELLIIGGVAARDQLSVLENG--------VDIVVGTPGRLDDLV-STGKLNLSQ  363
             D   LR  L+ G  +   +   L            DIVV TPGRL D +  T   +L Q
Sbjct  277  TDTTPLRVALVTGQKSLAKEQESLVQKTADGFRCLADIVVATPGRLVDHIDQTPGFSLQQ  336

Query  364  VRFLVLDEADGLLSQGYSDFINRMH-----------------NQIPQVTSDGKRL-----  401
            +RFL++DEAD ++   +  ++ R+                     PQ  +          
Sbjct  337  LRFLIIDEADRMIDSMHQSWLPRVVAAAFYSEGPTGSCALLQRTQPQALTAASTCVPQMP  396

Query  402  -QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLG  460
             Q ++ SATL + D +KL    ++ P                           RL ++  
Sbjct  397  LQKLLFSATL-TQDPEKLQRLGLYQPRLFST----------------------RLGQQSP  433

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
            K     D+   K     G     +        K    +  +      +A+ F  ++ +  
Sbjct  434  KDTAEVDENSGKYTFPVGLTHHYVPCRLSS--KPLIVLHLVLRMSCSRALCFTNSRENSH  491

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             L       GG         S         P +RK+ L++F++G ++ LI TD  ARGID
Sbjct  492  RLYLLAQAFGG--------VSVAEFSSRYGPGQRKKILKQFEQGKIQLLISTDATARGID  543

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYN  640
            + GV  VIN   P   + YVHR+GR  RA + G A +L+   +E+ +  +          
Sbjct  544  VQGVELVINYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKVQERKFLQM----------  593

Query  641  TRLKEDGGCTIWYNEM--QLLSEIEEHLNCTISQVEPDIKVPVD  682
              + E G   + ++E+  +LL  +       +SQ+E  +K    
Sbjct  594  --VSEAGVPELTHHEIPRKLLQPLVARYETALSQLEKTVKEEQK  635


 Score = 57.1 bits (136),  Expect = 4e-07, Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 14/73 (19%)

Query  9    VMPEIAQAVEEMDWLLPTDIQAESIPLILG--------GG------DVLMAAETGSGKTG  54
            V P++ + +          +QA  IP +L         G       D+ ++A TGSGKT 
Sbjct  177  VHPDLQKQLRANGITSYFPVQAAVIPALLESADHGFLIGRGGYQPSDLCVSAPTGSGKTL  236

Query  55   AFSIPVIQIVYET  67
            AF IPV+Q +   
Sbjct  237  AFVIPVVQALLHR  249


>sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 OS=Caenorhabditis 
elegans OX=6239 GN=glh-4 PE=1 SV=2
Length=1156

 Score = 230 bits (585),  Expect = 3e-62, Method: Composition-based stats.
 Identities = 86/429 (20%), Positives = 169/429 (39%), Gaps = 70/429 (16%)

Query  221   HMKNQALFPACVLKNAELKFNFGEEEFKFP---PKDGFVALSKAPDGYIVKSQHSGNAQV  277
              + + A F    +   +L  N    +   P    +  F  +    D        SG    
Sbjct  730   EIPDMASFDGFKILPQDLHDNLKRMKMNRPTPIQRASFFPIMHGNDVVACAHTGSGKTLA  789

Query  278   TQTKFL----------------PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLREL  321
                 F+                  +P+ LIV P+REL  QT    +Q         L+  
Sbjct  790   FLIPFVIKLMEEFEKDRDVTDEKPSPRLLIVAPTRELVNQTFTTARQL---TYETGLKCG  846

Query  322   LIIGGVAARDQLSVLEN--GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQ-  378
             L  GG +    +  L +   ++I+V T GRL D V+ G+++LS+++++VLDEAD ++   
Sbjct  847   LAFGGYSRNANVQHLRSFSQLNILVATMGRLQDFVNAGEVSLSKMKYIVLDEADRMVDSN  906

Query  379   GYSDFINRMHNQIPQVTSDGKRLQVIVCSATLH-SFDVKKLSEKIMHFPTWVDLKGEDSV  437
              + + ++++       +   +  Q ++ SA+         L + +    T + +    + 
Sbjct  907   DFGEEVSKIIG-----SPGERTQQTVLFSASFSEDLQSDDLPKFVKEGYTMLQVDKFGTA  961

Query  438   PDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYA  497
              + +   ++PV     R                            +   + + I +    
Sbjct  962   NEKIDQKILPVPRTEKR----------------------------DAIYKLLGIDENTVT  993

Query  498   VRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQN  557
             +      +  + +IF  +   CD L       G          S + +H  +   +R + 
Sbjct  994   LLPDAPIEKQKTLIFVNSVKFCDTLAALISSAG---------VSTISMHSYQNQEQRDRT  1044

Query  558   LERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDE--KQNYVHRIGRVGRAERMGLA  615
             L+ F++G  + ++ ++V ARG++I G+ +V+N  +PD+     YV+RIGR GRA   G +
Sbjct  1045  LDDFRRGKYQCMVASNVCARGLNIAGLDHVVNYDMPDKNGFDEYVNRIGRTGRAGFTGTS  1104

Query  616   ISLVATEKE  624
              + V  E +
Sbjct  1105  TAFVDVEND  1113


 Score = 92.1 bits (227),  Expect = 8e-18, Method: Composition-based stats.
 Identities = 33/114 (29%), Positives = 51/114 (45%), Gaps = 3/114 (3%)

Query  1    MAAFSEMGVMPE-IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
            MA+F    ++P+ +   ++ M    PT IQ  S   I+ G DV+  A TGSGKT AF IP
Sbjct  734  MASFDGFKILPQDLHDNLKRMKMNRPTPIQRASFFPIMHGNDVVACAHTGSGKTLAFLIP  793

Query  60   -VIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQ  112
             VI+++ E  KD+    +  +      +   +     +           GL C 
Sbjct  794  FVIKLMEEFEKDRDVTDEKPSPRLLIVAPTRELVNQTFTTARQLTY-ETGLKCG  846


>sp|Q4P9E5|SPB4_USTMA ATP-dependent rRNA helicase SPB4 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=SPB4 PE=3 
SV=2
Length=767

 Score = 226 bits (575),  Expect = 3e-62, Method: Composition-based stats.
 Identities = 95/417 (23%), Positives = 158/417 (38%), Gaps = 92/417 (22%)

Query  280  TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLR--------------------  319
            T+   +   ALIV P+RELAEQ    +  F    ++  ++                    
Sbjct  95   TRLKKDEVGALIVSPTRELAEQIYKVLVMFLDAQNHAHVQAQQQQDQDEQDEQDEQEAQS  154

Query  320  -------------------------------ELLIIGG---VAARDQLSVLENGVDIVVG  345
                                             L++GG       D   + ++G DI+VG
Sbjct  155  DSDTDPDASTALNNKRKSSNHLVARKNMISGAQLVVGGSKCTPLDDYRQLRDSGADILVG  214

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            TPGRL++L+S   +  S +  LVLDEAD LL  G+++ + R+ + +P      K+ +  +
Sbjct  215  TPGRLEELLSKKGVKKSSLEVLVLDEADRLLDLGFTENLRRILSLLP------KQRRTGL  268

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT+    + +L    +  P  V +K E        H        + R    L   +  
Sbjct  269  FSATMTDA-LSELVRIGLRNPVRVVVKVEA------KHKTSSSIDDSRRTPATLQNLY--  319

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                           +    ++  +I+  E +  AI      + I++  T    +     
Sbjct  320  -----------QLCRAQNKLAQLARIVLFESSQNAIS-GGARKLIVYFSTCAQVNYFYSV  367

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF--------KKGDVRFLICTDVAAR  577
            F Q       + H+     LHG + P +RK   + F               L CTDVAAR
Sbjct  368  FSQ---VSILRQHRVKLYALHGKQTPSKRKSMFDTFVASTALDSGASGASVLFCTDVAAR  424

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            G+D+  V  V+    P + + + HR GR  RA R G AI ++ T +E+ +      +
Sbjct  425  GLDLPDVDVVVQYDPPTDPKVFSHRCGRTARAGRNGRAIVMLHTGREQDFVSYMRVK  481


 Score = 86.7 bits (213),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 25/102 (25%), Positives = 47/102 (46%), Gaps = 6/102 (6%)

Query  3    AFSEM--GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +++++   + P +   + ++ +   T +QA +IPL +   DV++ A TGSGKT AF IPV
Sbjct  27   SWTKLTPPLTPWVVSLLSDLGFGQMTPVQASTIPLFVSHKDVVVEAVTGSGKTLAFVIPV  86

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            ++++      +    K         S   +     Y     F
Sbjct  87   LEMLAR----RTTRLKKDEVGALIVSPTRELAEQIYKVLVMF  124


>sp|P34640|DDX55_CAEEL Probable ATP-dependent RNA helicase DDX55 
homolog OS=Caenorhabditis elegans OX=6239 GN=ZK512.2 PE=3 
SV=2
Length=578

 Score = 221 bits (563),  Expect = 4e-62, Method: Composition-based stats.
 Identities = 83/409 (20%), Positives = 144/409 (35%), Gaps = 64/409 (16%)

Query  259  SKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKL  318
            S    G  +         +   K  P    ALI+ PSREL  Q ++ I+ F + ++   L
Sbjct  53   SPTGSGKTLAFVLPMMRMIQNAKLQPADIGALILSPSRELCSQIVSVIQPFAEKLN---L  109

Query  319  RELLIIGGVAARDQLSVLEN-GVDIVVGTPGRLDDLVSTGKL----NLSQVRFLVLDEAD  373
                + GG      + + +N  V+I+V TPGRL  ++   K      +  ++ LV+DEAD
Sbjct  110  TVETVTGGQKVDKNIKMFKNKNVNILVATPGRLFQIIQHEKTLIARKMRTLQLLVIDEAD  169

Query  374  GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG  433
                  + D +  + + IP      K+ +  + SAT    +   L    +     V +  
Sbjct  170  RFNEIQFEDHMREILSCIP------KQRRTGLFSAT-QVKEEDDLMVFGLRNAKQVKVAQ  222

Query  434  E--DSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
            E   + P T+ +  V                                             
Sbjct  223  ERNSAAPSTLKNYYVECRADE---------------------------------------  243

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
             K    +  I++    + +IF  +        + F +  G             +HG    
Sbjct  244  -KTSVCLEFIRQRTDKKILIFFPSCNSVRYFYKIFERCLGKR-------PLFAVHGKCSN  295

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
              R   ++ F       +I TDV ARGIDI  + +VI   LP     +VHR GR  R  R
Sbjct  296  PHRASQIKAFSDSTNGVMISTDVMARGIDISDIDWVIQFDLPKHSSWFVHRAGRTARCGR  355

Query  612  MGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660
             G A+ L+A+E+      + +         ++  +          +++ 
Sbjct  356  EGNALILIASEQLAYVNFLDNHEKVKLDEIKVPTNNSRKSEELRQKMIK  404


 Score = 54.8 bits (130),  Expect = 2e-06, Method: Composition-based stats.
 Identities = 24/123 (20%), Positives = 50/123 (41%), Gaps = 4/123 (3%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +  F E  + PE+ + V +  +   TD+Q  S   +L   DV++ + TGSGKT AF +P+
Sbjct  10   LKTFRE-KLGPELLE-VFDKSYKSFTDVQVLSGTHLLNLSDVVVESPTGSGKTLAFVLPM  67

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120
            ++++       Q    G   +     + ++             +  + +    +  K   
Sbjct  68   MRMI--QNAKLQPADIGALILSPSRELCSQIVSVIQPFAEKLNLTVETVTGGQKVDKNIK  125

Query  121  GCR  123
              +
Sbjct  126  MFK  128


>sp|Q4IBS2|MAK5_GIBZE ATP-dependent RNA helicase MAK5 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=MAK5 PE=3 SV=2
Length=781

 Score = 225 bits (574),  Expect = 4e-62, Method: Composition-based stats.
 Identities = 98/486 (20%), Positives = 178/486 (37%), Gaps = 68/486 (14%)

Query  235  NAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP----------  284
            + ++     + +F  P K     + +   G+ V  +    +  T    +P          
Sbjct  223  SPQIISAIAKLKFMKPTKIQKRTIPEIVAGHDVIGKAQTGSGKTLAFGIPMVERWLEMQE  282

Query  285  -----NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG  339
                   P +L++ P+RELA+Q  +++K     + +      ++ GG++   Q   LE  
Sbjct  283  QGVKRTGPMSLVLSPTRELAKQLGDHLKALCDGLPSAPY-VCVVTGGLSILKQQRQLEK-  340

Query  340  VDIVVGTPGRLDDLVSTGKL---NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTS  396
             DIV+GTPGRL +++S  +      +++RFLV+DEAD L   G       +   +   + 
Sbjct  341  ADIVIGTPGRLWEVLSGDRALQSKFAKIRFLVVDEADRLFKVGQFKEAEDIIGALDGKSP  400

Query  397  -----------------DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPD  439
                             +    Q +V SAT       KL+ K           G+ S  D
Sbjct  401  GDDAESEEESDEEDEDDEDAARQTLVFSATFDKDLQTKLAGK-----------GKSSGND  449

Query  440  TVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVR  499
                     + K   L + L K       +     ++      E   E   + K  Y   
Sbjct  450  ---------DEKMAYLMKCL-KFRGEPKFIDVNPVSQMAEGLREGLIECGAMEKDLYLYT  499

Query  500  AIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLE  559
             +  +   + ++F  +                 P       + + LH       R ++LE
Sbjct  500  VLILNPGRRTLVFTNSISAVRR---------LTPLLTNLNLTALPLHSQMAQKARHRSLE  550

Query  560  RFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            RF       LI TDVAARG+DI  V  V++  +P     Y+HR GR  R E  G+++ L 
Sbjct  551  RFTASRNSILIATDVAARGLDIKEVDQVLHYHVPRSADTYIHRSGRTARGESSGISVILC  610

Query  620  ATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKV  679
            A E+  +     +S+     +  +K +        + +  S ++  ++      +  +  
Sbjct  611  APEEV-LPTRRLASKVHAVRSAGVKREHFIQTLLIDRKAASRLKPRVDLAKKIADTILAK  669

Query  680  PVDEFD  685
                 D
Sbjct  670  EKAHSD  675


 Score = 109 bits (271),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 20/158 (13%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            MAA+  + + P+I  A+ ++ ++ PT IQ  +IP I+ G DV+  A+TGSGKT AF IP+
Sbjct  214  MAAWVSLNLSPQIISAIAKLKFMKPTKIQKRTIPEIVAGHDVIGKAQTGSGKTLAFGIPM  273

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF------------AIGSDG  108
            ++   E    Q++G K    +    S   +      D   A               G   
Sbjct  274  VERWLE---MQEQGVKRTGPMSLVLSPTRELAKQLGDHLKALCDGLPSAPYVCVVTGGLS  330

Query  109  LCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCR  146
            +  Q R++++      T G       +EV   D+ L  
Sbjct  331  ILKQQRQLEKADIVIGTPGR-----LWEVLSGDRALQS  363


>sp|Q8N8A6|DDX51_HUMAN ATP-dependent RNA helicase DDX51 OS=Homo 
sapiens OX=9606 GN=DDX51 PE=1 SV=3
Length=666

 Score = 223 bits (568),  Expect = 5e-62, Method: Composition-based stats.
 Identities = 94/429 (22%), Positives = 158/429 (37%), Gaps = 79/429 (18%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG-------  339
             +AL+V P++ELA+Q       F  Y D   LR  L+ G  +   +   L          
Sbjct  282  IRALVVLPTKELAQQVSKV---FNIYTDATPLRVSLVTGQKSLAKEQESLVQKTADGYRC  338

Query  340  -VDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD  397
              DIVV TPGRL D +  T   +L Q+RFL++DEAD ++   +  ++ R+     Q    
Sbjct  339  LADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVVAAAFQSEDP  398

Query  398  GKRL-----------------------QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE  434
                                       Q ++ SATL + + +KL +  +H P    L   
Sbjct  399  ADPCALLQRRQAQAVTAASTCCPQMPLQKLLFSATL-TQNPEKLQQLGLHQP---RLFST  454

Query  435  DSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG  494
                  +       +         L   ++                            K 
Sbjct  455  GLAHRGLEDTDGDGDSGKYAFPVGLTHHYVPCSLSS----------------------KP  492

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
               +  + E    + + F  ++ +   L       GG                   P +R
Sbjct  493  LVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGG--------VDVAEFSSRYGPGQR  544

Query  555  KQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGL  614
            +  L++F++G ++ LI TD  ARGID+ GV  V+N   P   + YVHR+GR  RA + G 
Sbjct  545  RMILKQFEQGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQ  604

Query  615  AISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVE  674
            A +L+   +E+ +  + +    G    +  E           +LL  +       +SQ+E
Sbjct  605  AFTLLLKVQERRFLRMLTE--AGAPELQRHELSS--------KLLQPLVPRYEEALSQLE  654

Query  675  PDIKVPVDE  683
              +K    +
Sbjct  655  ESVKEERKQ  663


 Score = 56.3 bits (134),  Expect = 9e-07, Method: Composition-based stats.
 Identities = 22/72 (31%), Positives = 33/72 (46%), Gaps = 14/72 (19%)

Query  8    GVMPEIAQAVEEMDWLLPTDIQAESIPLILG--------GG------DVLMAAETGSGKT  53
             V P++ + +          +QA  IP +L         G       D+ ++A TGSGKT
Sbjct  204  DVHPDLQKQLRAHGISSYFPVQAAVIPALLESAACGFLVGRGGYRPSDLCVSAPTGSGKT  263

Query  54   GAFSIPVIQIVY  65
             AF IPV+Q + 
Sbjct  264  LAFVIPVVQALL  275


>sp|Q2UFL0|DBP9_ASPOR ATP-dependent RNA helicase dbp9 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp9 
PE=3 SV=1
Length=605

 Score = 221 bits (563),  Expect = 9e-62, Method: Composition-based stats.
 Identities = 108/568 (19%), Positives = 177/568 (31%), Gaps = 132/568 (23%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             + L L   +   +  +      +++   +                 +A +K   G    
Sbjct  29   FESLNLDPRLRQALIKEKFTKPTLVQAKAIPLAL--------EGKDILARAKTGSGKTAA  80

Query  269  SQHSGNAQVTQTKFLPNAPKA---LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
                    + Q K    + KA   LI+ P+RELAEQ  N +  F  +     +R + +  
Sbjct  81   YVLPILQTILQKKATDPSFKATTGLILVPTRELAEQVQNVVTTFAAFC-GKDVRSVNLTQ  139

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
             V+   Q ++L +  D+VV TP R+   + +  L+L  +  LV+DEAD +LS GY + IN
Sbjct  140  KVSDAVQRTMLADYPDLVVSTPARVVTNLGSSALSLENLTHLVIDEADLVLSYGYEEDIN  199

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
             +   IP      + +Q  + SATL   +V  L       P  + L+ +D     V   V
Sbjct  200  ALAKAIP------RGVQTFLMSATLTD-EVDTLKGLFCRSPVTLKLEDKDDQGAGVSQFV  252

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
            V        L                                          V    +  
Sbjct  253  VRCAEDEKFLLTY---------------------------------------VIFKLQLI  273

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
              + IIF      C  ++ +  Q G              L+ +   + R   ++ F KG 
Sbjct  274  KGKVIIFVDDVDRCYRVKLFLEQFG---------IKSCVLNSELPINSRIHVVQEFNKGV  324

Query  566  VRFLICTDV---------------------------------------------AARGID  580
               LI  D                                               +RGID
Sbjct  325  YDILIAADEQEVIGARKSKKSKETEEAGSSDEDEGEPEDKSKRRKVSGKEKDYGISRGID  384

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE----------------KE  624
               V  V+N  LP   ++Y HRIGR GRA + G+A+S V  +                 E
Sbjct  385  FQNVACVLNFDLPSTSKSYTHRIGRTGRAGKTGMALSFVIPKDQHGKHRPTSTATSKHDE  444

Query  625  KVWYHVCSSRGKGCYNTRLK--EDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVD  682
             V   +   +GK  +  +    E      +   M         L    ++     +  + 
Sbjct  445  SVLAKIVKRQGKLGHEVKPYHFEMKQVEAFRYRMTDALRAVTRLAVQEARAREIRQELIK  504

Query  683  EFDGKVTYGQKRAAGGGSYKGHVDILAP  710
                K  + +           H D L  
Sbjct  505  SEKLKRHFEENPEELRQ--LRHDDELRS  530


 Score = 102 bits (253),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 29/101 (29%), Positives = 50/101 (50%), Gaps = 3/101 (3%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F  + + P + QA+ +  +  PT +QA++IPL L G D+L  A+TGSGKT A+ +P++Q 
Sbjct  29   FESLNLDPRLRQALIKEKFTKPTLVQAKAIPLALEGKDILARAKTGSGKTAAYVLPILQT  88

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            + +    +      K T         +      +  + FA 
Sbjct  89   ILQK---KATDPSFKATTGLILVPTRELAEQVQNVVTTFAA  126


>sp|O13622|MS116_SCHPO ATP-dependent RNA helicase mss116, mitochondrial 
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) 
OX=284812 GN=mss116 PE=3 SV=1
Length=535

 Score = 219 bits (558),  Expect = 1e-61, Method: Composition-based stats.
 Identities = 82/413 (20%), Positives = 152/413 (37%), Gaps = 60/413 (15%)

Query  249  FPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPK--ALIVEPSRELAEQTLNNI  306
            FP ++  V  +K   G  +         V + K   N+ K  ++I+ P+RELA Q     
Sbjct  73   FPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEA  132

Query  307  KQFKKYIDNPKLRELLIIGGVAARDQLSVLENG-VDIVVGTPGRLDDLVSTGKLNLSQVR  365
            ++         +R    IGG +   + + +  G  ++++ TPGRL+D +   ++ L  + 
Sbjct  133  RKL---TYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLEDHLQNPRI-LESLS  188

Query  366  F--LVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIM  423
                +LDEAD L+  G+++ I  +H  +        + + +  SAT+           + 
Sbjct  189  TDSFILDEADRLMDMGFAESILNIHEAV-----TTTKTRKLCFSATMPPKVSNVFRGILG  243

Query  424  HFPTWVDLKG--EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANS  481
                 ++     E    + V   V+                                   
Sbjct  244  TDFKLINCLDPNEPPTHERVPQFVI-----------------------------------  268

Query  482  PEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFS  541
             E   + +         +    +   + I+F  T    D +        GG  +   +  
Sbjct  269  -ETKLDKVFSSSLSLLQQLTSSNPSSRIIVFLPTISMVDFV--------GGVLENHLKIP  319

Query  542  CVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH  601
            C  LH      +R+   E F+K     L  TDV ARG+D   +  V+ +T P    +Y+H
Sbjct  320  CFILHSGLTTAQRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIH  379

Query  602  RIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYN  654
            RIGR GRA + G A  ++  +++     +     K      L +    T+  +
Sbjct  380  RIGRTGRAGKTGEAYLILLEQEKPFLNSIKHLPLKRATIEPLSDQALSTLRSD  432


 Score = 59.0 bits (141),  Expect = 1e-07, Method: Composition-based stats.
 Identities = 19/106 (18%), Positives = 42/106 (40%), Gaps = 6/106 (6%)

Query  4    FSEM-GVMPEIAQAVEEMDWLLPTDIQAESIPLIL-GGGDVLMAAETGSGKTGAFSIPVI  61
            FSE+  +      ++    +   T +Q   +  +     + ++ A+TG+GKT AF +   
Sbjct  39   FSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAF  98

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
            + V +  K +    K  + I    S   +  +  ++       G+ 
Sbjct  99   KDVLK-GKPRLNSSKIHSVI---LSPTRELALQIFEEARKLTYGTG  140


>sp|A5E1N2|ROK1_LODEL ATP-dependent RNA helicase ROK1 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=ROK1 PE=3 SV=1
Length=553

 Score = 220 bits (559),  Expect = 1e-61, Method: Composition-based stats.
 Identities = 107/501 (21%), Positives = 194/501 (39%), Gaps = 81/501 (16%)

Query  204  KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPD  263
             F        +   +  ++ +        ++   +       +         +A +    
Sbjct  117  SFQDMIGRFKIDKRVLSNLLDAEFVEPTPIQCEAIPITLANRD--------LIACAPTGS  168

Query  264  GYIVKSQHSGNAQV-TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
            G  +        Q+ +Q     +  + LI+ P+ ELA Q    ++   K      L   +
Sbjct  169  GKTLAFLIPLLQQLVSQNVLKNHGIRGLIISPTNELAVQIFQQLEIISK---GKGLNIAI  225

Query  323  IIGGVAARDQLSVLE-NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYS  381
            +   +A +    V++ +  DI+V TP RL D+V  GK++LS+V  LV+DEAD L   G++
Sbjct  226  LSKQLAGKISNDVVKASKYDILVSTPLRLIDVVKLGKVDLSKVTQLVIDEADKLFDHGFA  285

Query  382  DFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV  441
            +  + + +          +++  + SAT+ S  V++++  IM  P  V +  +++  +T+
Sbjct  286  EQTDELLSHC-----TNVKIRKSMFSATIPSG-VEEMAHSIMKDPIRVIIGHKEAASNTI  339

Query  442  HHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI  501
               +V    +  +L                                              
Sbjct  340  EQKLVFTGNEEGKLLAIRQMIQ--------------------------------------  361

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
                    IIF ++      L    +           + +   +H +R P +R + ++RF
Sbjct  362  NGEFKPPIIIFLQSITRAKALFHELVYD---------KLNVDVIHAERTPKQRDEVIKRF  412

Query  562  KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT  621
            K GD+  LI TDV ARG+D  GV  VIN  +P   Q YVHRIGR GR  R G A++    
Sbjct  413  KNGDIWVLITTDVLARGVDFKGVNMVINYDVPQSAQAYVHRIGRTGRGGRSGKAVTFFTK  472

Query  622  EKEKVWYHVCS-SRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCT-------ISQV  673
            E +K    + +  +  GC +       G + W  ++  LS+ E+    T       IS V
Sbjct  473  EDDKAVKPIINVMKQSGCTD-------GLSDWMEDLGKLSKREKRAVKTHEIERKKISTV  525

Query  674  EPDIKVPVDEFDGKVTYGQKR  694
               IK    +    +   ++R
Sbjct  526  PSVIKQKRKQRQNMIEASKRR  546


 Score = 96.0 bits (237),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 52/111 (47%), Gaps = 5/111 (5%)

Query  1    MAAFSEM----GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
            + +F +M     +   +   + + +++ PT IQ E+IP+ L   D++  A TGSGKT AF
Sbjct  115  IGSFQDMIGRFKIDKRVLSNLLDAEFVEPTPIQCEAIPITLANRDLIACAPTGSGKTLAF  174

Query  57   SIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKW-QMNPYDRGSAFAIGS  106
             IP++Q +      +  G +G     T    +  + Q+    +G    I  
Sbjct  175  LIPLLQQLVSQNVLKNHGIRGLIISPTNELAVQIFQQLEIISKGKGLNIAI  225


>sp|Q7S6F3|DBP9_NEUCR ATP-dependent RNA helicase dbp-9 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=dbp-9 PE=3 SV=1
Length=676

 Score = 222 bits (565),  Expect = 1e-61, Method: Composition-based stats.
 Identities = 110/578 (19%), Positives = 190/578 (33%), Gaps = 130/578 (22%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
                 DLGL   +   +  Q+     +++   +      ++         +  +K   G 
Sbjct  94   DLTFSDLGLDPRLVQAVAKQSFEKPTLVQRKAIPLALAGQD--------VLCKAKTGSGK  145

Query  266  IVKSQHSGNAQVTQTKFLPNAP--KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLI  323
                     + + + K     P   ALI+ P+RELA+Q    I  F  +     ++   +
Sbjct  146  TAAYVLPVLSGILKRKATDPTPFTSALILVPTRELADQVHKAIDAFSAFC-TKDIQSAKL  204

Query  324  IGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDF  383
               V+     S+L N  D++V TP R    + +G L+++++++LVLDEAD +LS GY + 
Sbjct  205  TDNVSDAVLRSLLANAPDVIVSTPARAWHNIESGALSVAKLQYLVLDEADLVLSYGYDED  264

Query  384  INRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPD-TVH  442
            +  +   +P+       +Q  + SATL S ++  L       PT +DLK E S  D  + 
Sbjct  265  MENIARSLPKG-----GVQTTMMSATLVSDELDTLKGFFCRNPTMLDLKEEFSNEDEKLT  319

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
               V        L   L                                           
Sbjct  320  QFYVKCGEDDKWLISYLI---------------------------------------FKL  340

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
            +      ++F         L+ +F Q                L+ +   + R + +E F 
Sbjct  341  QLIKGPCLVFVADIDRAYRLKLFFEQF---------SIRSCVLNSELPINTRIKIIEEFN  391

Query  563  KGDVRFLICTDV--------------------------------------------AARG  578
            +G    +I +D                                              +RG
Sbjct  392  RGIYDIIIASDERSEVFLEDEKTEEKKEEQGEKKEGDEKKNGKGKKKKGRRDQEYGVSRG  451

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGC  638
            ID   V  VIN  +P    +Y+HRIGR  RA R G+A+S+V      ++     +  K C
Sbjct  452  IDFKNVAAVINFDMPTSSSSYIHRIGRTARAGRAGIALSMVVPHD--LFGKHKPTSIKQC  509

Query  639  YNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGG  698
                 K++        +   L+   E  N    Q+E       D                
Sbjct  510  E----KDEKVLAKVMRQQAKLNRKLEPYNFNKDQMEAFRYRMNDALRAVTK---------  556

Query  699  GSYKGHVDILAPTVQELAALEKEAQTSFLHLGYLPNQL  736
                  V I     +EL      ++T   +    P++L
Sbjct  557  ------VAIREARTRELRQELLRSETLKRYFEENPHEL  588


 Score = 101 bits (252),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 4/102 (4%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             FS++G+ P + QAV +  +  PT +Q ++IPL L G DVL  A+TGSGKT A+ +PV+ 
Sbjct  96   TFSDLGLDPRLVQAVAKQSFEKPTLVQRKAIPLALAGQDVLCKAKTGSGKTAAYVLPVLS  155

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
             + +             T         +     +    AF+ 
Sbjct  156  GILKRKATDPT----PFTSALILVPTRELADQVHKAIDAFSA  193


>sp|Q9D0R4|DDX56_MOUSE Probable ATP-dependent RNA helicase DDX56 
OS=Mus musculus OX=10090 GN=Ddx56 PE=1 SV=1
Length=546

 Score = 219 bits (557),  Expect = 2e-61, Method: Composition-based stats.
 Identities = 101/559 (18%), Positives = 185/559 (33%), Gaps = 102/559 (18%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             + +GL   +   + +       +++   +      ++     + G    S     Y + 
Sbjct  9    FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTG----SGKTAAYAIP  64

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
               S   +      +  A + L++ P++ELA Q    I+Q   Y     +R   +     
Sbjct  65   MLQSLLHKKATGPVMEQAVRGLVLVPTKELARQAQAMIQQLAAYCAR-DVRVANVSAAED  123

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLS-QVRFLVLDEADGLLSQGYSDFINRM  387
            +  Q +VL    D+VVGTP R+   +    L L   +  LV+DEAD L S G+ D +  +
Sbjct  124  SASQRAVLMEKPDVVVGTPSRVLSHLQQNTLKLRDSLELLVVDEADLLFSFGFEDELKSL  183

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSV-PDTVHHVVV  446
               +P++       Q  + SAT +  DV+ L E ++H P  + L+      PD +    V
Sbjct  184  LCHLPRI------YQAFLMSATFN-EDVQTLKELVLHNPVTLKLQESQLPGPDQLQQFQV  236

Query  447  PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM  506
                + D+         +                                          
Sbjct  237  VCETEEDKFLLLYALLKLSLI--------------------------------------R  258

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
             +A++F  T      L  +  Q                L+G+     R   + +F +G  
Sbjct  259  GKALLFVNTLERGYRLRLFLEQF---------SIPSCVLNGELPLRSRCHIISQFNQGLY  309

Query  567  RFLICTDV---------------------------AARGIDIHGVPYVINVTLPDEKQNY  599
              +I TD                             ARGID H V  V+N  LP   + Y
Sbjct  310  DCVIATDAEILGPQVKGKRRGRGSKGNKASDPESGVARGIDFHHVSAVLNFDLPPTAEAY  369

Query  600  VHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLL  659
            VHR GR  RA   G+ ++ V   ++     +              E      +  +M+ +
Sbjct  370  VHRAGRTARANNPGIVLTFVLPAEQPFLGKIEDLLSGEG------EAPILLPYQFQMEEI  423

Query  660  SEIEEHLNCTISQVEPDI--KVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAA  717
                      +  V      +  + E   ++ + +K       ++ +   L     +L  
Sbjct  424  ESFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEK---LKTYFEDNPRDLQLLRHDLPL  480

Query  718  LEKEAQTSFLHLGYLPNQL  736
                 +    HLG++P+ L
Sbjct  481  HPAVVKP---HLGHVPDYL  496


 Score = 100 bits (250),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 32/101 (32%), Positives = 46/101 (46%), Gaps = 2/101 (2%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F  MG+ P + QAV ++ W  PT IQ ++IPL L G D+L  A TGSGKT A++IP++Q 
Sbjct  9    FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQS  68

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            +    K        +           +            A 
Sbjct  69   LLH--KKATGPVMEQAVRGLVLVPTKELARQAQAMIQQLAA  107


>sp|Q9NY93|DDX56_HUMAN Probable ATP-dependent RNA helicase DDX56 
OS=Homo sapiens OX=9606 GN=DDX56 PE=1 SV=1
Length=547

 Score = 218 bits (555),  Expect = 4e-61, Method: Composition-based stats.
 Identities = 98/539 (18%), Positives = 179/539 (33%), Gaps = 98/539 (18%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             + +GL   +   + +       +++   +      ++     + G    S     Y + 
Sbjct  9    FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTG----SGKTAAYAIP  64

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
                   +      +  A + L++ P++ELA Q  + I+Q   Y     +R   +     
Sbjct  65   MLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCAR-DVRVANVSAAED  123

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLS-QVRFLVLDEADGLLSQGYSDFINRM  387
            +  Q +VL    D+VVGTP R+   +    L L   +  LV+DEAD L S G+ + +  +
Sbjct  124  SVSQRAVLMEKPDVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSL  183

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSV-PDTVHHVVV  446
               +P++       Q  + SAT +  DV+ L E I+H P  + L+      PD +    V
Sbjct  184  LCHLPRI------YQAFLMSATFN-EDVQALKELILHNPVTLKLQESQLPGPDQLQQFQV  236

Query  447  PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM  506
                + D+         +                                          
Sbjct  237  VCETEEDKFLLLYALLKLSLI--------------------------------------R  258

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
             ++++F  T      L  +  Q                L+G+     R   + +F +G  
Sbjct  259  GKSLLFVNTLERSYRLRLFLEQF---------SIPTCVLNGELPLRSRCHIISQFNQGFY  309

Query  567  RFLICTDV---------------------------AARGIDIHGVPYVINVTLPDEKQNY  599
              +I TD                             ARGID H V  V+N  LP   + Y
Sbjct  310  DCVIATDAEVLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNFDLPPTPEAY  369

Query  600  VHRIGRVGRAERMGLAISLVATEKEKVWYHVC-----SSRGKGCYNTRLKEDGGCTIWYN  654
            +HR GR  RA   G+ ++ V   ++     +       +RG      + + +      Y 
Sbjct  370  IHRAGRTARANNPGIVLTFVLPTEQFHLGKIEELLSGENRGPILLPYQFRMEEIEGFRYR  429

Query  655  EMQLLSEIEEHLNCTISQVE-PDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTV  712
                +  + +     I +    +IK  +   +   TY +         + H   L P V
Sbjct  430  CRDAMRSVTKQ---AIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLR-HDLPLHPAV  484


 Score = 100 bits (248),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 34/103 (33%), Positives = 50/103 (49%), Gaps = 10/103 (10%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F  MG+ P + QAV ++ W  PT IQ ++IPL L G D+L  A TGSGKT A++IP++Q+
Sbjct  9    FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL  68

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            +             K T       +    + P    +  A   
Sbjct  69   LLHR----------KATGPVVEQAVRGLVLVPTKELARQAQSM  101


>sp|Q3SZ40|DDX56_BOVIN Probable ATP-dependent RNA helicase DDX56 
OS=Bos taurus OX=9913 GN=DDX56 PE=2 SV=1
Length=546

 Score = 218 bits (554),  Expect = 5e-61, Method: Composition-based stats.
 Identities = 98/542 (18%), Positives = 179/542 (33%), Gaps = 98/542 (18%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
            S   + +GL   +   + +       +++   +      ++     + G    S     Y
Sbjct  6    SLGFEHMGLDHRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTG----SGKTAAY  61

Query  266  IVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
             +        +      +  A +AL++ P++ELA Q  + I+Q   Y     +R   +  
Sbjct  62   AIPMLQLLLHRKATGPVVEQAVRALVLVPTKELARQAQSMIQQLAAYCAR-DIRVANVSA  120

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLS-QVRFLVLDEADGLLSQGYSDFI  384
               +  Q +VL    D+VVGTP R+ + +    L L   +  LV+DEAD L S G+ + +
Sbjct  121  AEDSASQRAVLMEKPDVVVGTPSRILNHLQQDNLKLRDSMELLVVDEADLLFSFGFEEEL  180

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSV-PDTVHH  443
              +   +P++       Q  + SAT +  DV+ L E ++H P  + L+      PD +  
Sbjct  181  KSLLCHLPRI------YQAFLMSATFN-EDVQALKELVLHNPVTLKLQESQLPGPDQLQQ  233

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
              V    + D+         +                                       
Sbjct  234  FQVVCETEEDKFLLLYALLKLSLI------------------------------------  257

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
                ++++F  T      L  +  Q                L+G+     R   + +F +
Sbjct  258  --RGKSLLFVNTLERSYRLRLFLEQF---------SIPACVLNGELPLRSRCHIISQFNQ  306

Query  564  GDVRFLICTDV---------------------------AARGIDIHGVPYVINVTLPDEK  596
            G    +I TD                             ARGID H V  V+N  LP   
Sbjct  307  GFYDCVIATDAEVLGPPVKGKHRGKGPKRDKASDPEAGVARGIDFHHVCAVLNFDLPPTP  366

Query  597  QNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS-----SRGKGCYNTRLKEDGGCTI  651
            + Y+HR GR  RA   G+ ++ V   ++     +       S        +   +     
Sbjct  367  EAYIHRAGRTARANNPGIVLTFVLPTEQSQLGKIEELLSGDSGAPVLLPYQFHMEEIEGF  426

Query  652  WYNEMQLLSEIEEHLNCTISQVE-PDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAP  710
             Y     +  + +     I +    +IK  +   +   TY +         + H   L P
Sbjct  427  RYRCRDAMRSVTKQ---AIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLR-HDLPLHP  482

Query  711  TV  712
             V
Sbjct  483  AV  484


 Score = 97.5 bits (241),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 42/64 (66%), Gaps = 0/64 (0%)

Query  4   FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           F  MG+   + QAV ++ W  PT IQ ++IPL L G D+L  A TGSGKT A++IP++Q+
Sbjct  9   FEHMGLDHRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL  68

Query  64  VYET  67
           +   
Sbjct  69  LLHR  72


>sp|Q6ATJ8|RH16_ORYSJ DEAD-box ATP-dependent RNA helicase 16 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os03g0728800 PE=2 
SV=1
Length=670

 Score = 219 bits (557),  Expect = 2e-60, Method: Composition-based stats.
 Identities = 95/465 (20%), Positives = 168/465 (36%), Gaps = 102/465 (22%)

Query  212  LGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQH  271
            LGL  ++   ++ + L  A  ++   +      ++     K G    S     Y++   H
Sbjct  97   LGLDEQLKRALRKKGLDKATPIQREAIPLILEGKDVVAKAKTG----SGKTFAYLLPMLH  152

Query  272  SGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARD  331
                   + +   +AP   I+ P+REL +Q  N      ++    KL+ + +   ++ +D
Sbjct  153  ELLKLSAEGRIRKSAPNVFILVPTRELCQQVHNEASSLLEFC-TSKLKVVQVNASMSDKD  211

Query  332  QLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVR----FLVLDEADGLLSQGYSDFINRM  387
                L    +I+V TP  +   +S G +  S ++     ++LDEAD LLS    D I  +
Sbjct  212  IKVALSGPPNILVTTPACVASCISKGIIRGSSIKESLSMMILDEADLLLSYRCEDDIKAL  271

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFP-----TWVDLKGEDSVPDTVH  442
               IP      +  Q I+ SAT  S D++KL++ ++H P     T V    +D +P  V 
Sbjct  272  VPHIP------RSCQSILMSAT-SSADIEKLTKLLLHNPFILTLTEVGHAKDDLIPKNVQ  324

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
               +  + K   L+                                         V    
Sbjct  325  QFWISCDAKDKMLY---------------------------------------ILVLLKL  345

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
            E    + +IF  +      L  +  + G              L+ +   + R   ++ F 
Sbjct  346  ELIQKKVLIFVNSIDSAFKLRLFLEKFG---------IRSSVLNAELPQNSRLHIIQAFN  396

Query  563  KGDVRFLICTDV---------------------------------AARGIDIHGVPYVIN  589
                 +LI TD                                    RGID   V  V+N
Sbjct  397  ARLFDYLIATDDNKSKEERQANKGNKKDSRVSRKQLQQTLDAEFGVVRGIDFKNVFTVVN  456

Query  590  VTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
              +P +   YVHR+GR GRA + G +ISLV+ ++  ++  + +  
Sbjct  457  YDMPPDPAGYVHRVGRTGRANKTGASISLVSPKENGIFEDIENML  501


 Score = 101 bits (252),  Expect = 5e-21, Method: Composition-based stats.
 Identities = 32/101 (32%), Positives = 53/101 (52%), Gaps = 4/101 (4%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F E+G+  ++ +A+ +      T IQ E+IPLIL G DV+  A+TGSGKT A+ +P++ 
Sbjct  93   SFDELGLDEQLKRALRKKGLDKATPIQREAIPLILEGKDVVAKAKTGSGKTFAYLLPMLH  152

Query  63   IVYETLKDQQEGKKGKTTIKTGAS-VLNKWQMNPYDRGSAF  102
               E LK   EG+  K+           +     ++  S+ 
Sbjct  153  ---ELLKLSAEGRIRKSAPNVFILVPTRELCQQVHNEASSL  190


>sp|Q6CKZ4|DBP6_KLULA ATP-dependent RNA helicase DBP6 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP6 PE=3 SV=1
Length=630

 Score = 217 bits (553),  Expect = 3e-60, Method: Composition-based stats.
 Identities = 90/431 (21%), Positives = 169/431 (39%), Gaps = 47/431 (11%)

Query  260  KAPDGYIVKSQHSGNAQVTQTKFLP-------NAPKALIVEPSRELAEQTLNNIKQFKKY  312
            +  D  +  S  SG         +        N  +A+I+ P++ L  Q  + + +  + 
Sbjct  227  RVGDILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQG  286

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
                    +  +      +    L N  DI++ TPGRL D +     +L  ++FLVLDEA
Sbjct  287  TSLN--VSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEA  344

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQV--IVCSATLHSFDVKKLSEKIMHFPTWVD  430
            D LL+Q + ++   + + +     D +   V  +V SATL + + +KL    +H P    
Sbjct  345  DRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTT-NAEKLYNLYLHNPKI--  401

Query  431  LKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIK  490
                  + D+V    +P                 +  +++    T      P +    I 
Sbjct  402  -----FLTDSVKLYSIPK----------------KLQELNVNIPTAKSLFKPLLLLRIIH  440

Query  491  ILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF-IQQGGGPDKKGHQFSCVCLHGDR  549
             +K   +  A       + ++F ++      LE       G G  +  +      +H + 
Sbjct  441  DIKSSASRNA-------KILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLSSIHSNI  493

Query  550  KPHERKQNLERF--KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVG  607
                 ++ ++ F   +     LI TD+ ARGIDI+ + +VIN  LP   Q YVHR GR  
Sbjct  494  SKGSSRKLIQEFASSEQKKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTA  553

Query  608  RAERMGLAISLVATEKEKVWY--HVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEH  665
            RA   G+AI+L+  + E+ ++  H+ +   +     +               +   +++ 
Sbjct  554  RANTEGIAINLLVGKGEQKFWSQHIDTDLSRDIDGYQPSAYLDEEKLSELFSIEDTLKDT  613

Query  666  LNCTISQVEPD  676
                I Q++  
Sbjct  614  YKGCIKQLQTS  624


 Score = 42.4 bits (98),  Expect = 0.017, Method: Composition-based stats.
 Identities = 27/129 (21%), Positives = 51/129 (40%), Gaps = 23/129 (18%)

Query  9    VMPEIAQAVEEMDWLLPT-DIQA----ESIPLILGG------------GDVLMAAETGSG  51
            +   + + +   ++   T  IQ     + +PL+               GD+L+ A TGSG
Sbjct  182  LDARLLKNITS-NFSSETFPIQTILFDKVLPLLNSSFKANRKLFTRRVGDILVNASTGSG  240

Query  52   KTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
            KT A+S+P++QI+       +   K +  I     +L     +   + S     +  +  
Sbjct  241  KTLAYSVPLVQILR-----SRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSLNVSMSK  295

Query  112  QSREVKEWH  120
                +KE H
Sbjct  296  LENSLKEEH  304


>sp|Q0UZ59|DBP9_PHANO ATP-dependent RNA helicase DBP9 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=DBP9 PE=3 SV=1
Length=597

 Score = 215 bits (547),  Expect = 1e-59, Method: Composition-based stats.
 Identities = 91/465 (20%), Positives = 159/465 (34%), Gaps = 98/465 (21%)

Query  246  EFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN-----APKALIVEPSRELAE  300
                          +  D        +G         L N        +LI+ P++ELA 
Sbjct  69   SPTAVQSKAIPLALQGRDILARSGTGTGKTGAYLLPILHNTLLRKGKTSLILVPTKELAL  128

Query  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN  360
            Q     K    +     +R   I G  +     + L +  DIV+ TP R    ++TG L 
Sbjct  129  QITKVAKALSAHCGQA-VRIQNIAGKESEVVTKAKLADNPDIVIATPARASANINTGALA  187

Query  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
            ++++  LV+DE D ++  G+ + ++++   IP      K +Q+ + SATL++ +V+ L  
Sbjct  188  VTELAHLVVDEGDLVMGYGFKEDLDQIAQNIP------KGVQMFLMSATLNT-EVESLGS  240

Query  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480
             + + P  + L   D     V   V+    +                             
Sbjct  241  LLCNDPVVLKLDDLDKDSKRVKQYVIKCAEE-----------------------------  271

Query  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540
                  E   ++   + +  IK     + I+F         ++ +  Q G          
Sbjct  272  ------EKFLLIYAMFKLGLIK----GKTIVFVGDTDRSYRVKLFLEQFG---------I  312

Query  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA-------------------------  575
                L+ +     R   +E F K     LI +D                           
Sbjct  313  KSCVLNSELPLASRLHIVEEFNKNIYNILIASDETEILGSQKKADESRPKKKPKTDKEAK  372

Query  576  -----ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
                 +RGID   V  V+N   P   ++Y HRIGR  RA + G AIS +  + +  +   
Sbjct  373  NDSGVSRGIDFLNVSCVLNFDFPATYKSYFHRIGRTARAGKSGTAISFIIPKDK--YRKH  430

Query  631  CSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEP  675
             S+   GC N     D        + Q   +  E+ N  + ++EP
Sbjct  431  KSTTFAGCEN-----DEEVLKKVEKHQEAGQKLENYNFDMKRLEP  470


 Score = 99.0 bits (245),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 31/125 (25%), Positives = 62/125 (50%), Gaps = 14/125 (11%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +A+F+E+ + P + + + +  W  PT +Q+++IPL L G D+L  + TG+GKTGA+ +P+
Sbjct  46   VASFAELQLEPRLLRGIRDQKWGSPTAVQSKAIPLALQGRDILARSGTGTGKTGAYLLPI  105

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120
            +             +KGKT++        +  +    + +  A      C Q+  ++   
Sbjct  106  LHNTL--------LRKGKTSL--ILVPTKELAL----QITKVAKALSAHCGQAVRIQNIA  151

Query  121  GCRAT  125
            G  + 
Sbjct  152  GKESE  156


>sp|Q4P0Y5|DBP7_USTMA ATP-dependent RNA helicase DBP7 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP7 PE=3 SV=1
Length=974

 Score = 220 bits (561),  Expect = 2e-59, Method: Composition-based stats.
 Identities = 95/515 (18%), Positives = 157/515 (30%), Gaps = 112/515 (22%)

Query  228  FPACVLKNAEL-----KFNFGEEEFKFPPKDGFVALSKAPDGYIV--KSQHSGNAQVTQT  280
            F +C L    +     K N G              L    D  I+      SG       
Sbjct  202  FASCGLDPLLVYHLASKMNIGSNPTAIQKAALPHLLHPGLDRDILIQAQTGSGKTLTYLL  261

Query  281  KFLPN--------------APKALIVEPSRELAEQTLNNIKQFKKYI-------------  313
              + +                 A+++ P+RELA Q    +++                  
Sbjct  262  PIVQSLLPLCEESFIDRSVGTLAIVLAPTRELARQIYEVLEKLVSLALSLKEQNQEVEGT  321

Query  314  --DNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLD  370
                  L   L+ GG     +   L  G  I+V TPGRL D + +T   ++ + R+LVLD
Sbjct  322  VRRTRWLVPGLLSGGSTKNHEKQRLRKGCPILVSTPGRLLDHLQNTSSFDVGKCRWLVLD  381

Query  371  EADGLLSQGYSDFINRMHNQIPQVTS----------------------------------  396
            EAD LL  G+ + +  +   +    +                                  
Sbjct  382  EADRLLEMGFEEQLTGIVRALDGRRNLACTAARQAMPAYQEGTAPGDADWIPDADVMDTL  441

Query  397  ----DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKT  452
                     +V++CSATL    V+ L+ K +  P  +    +    +T   V    +   
Sbjct  442  GMAWWAHARRVVLCSATLDEH-VQVLAGKTLVNPKIIR-GVKSDAAETSTQVTTDADSTL  499

Query  453  DRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF  512
             +   +                         +    I   + ++      +    + I+F
Sbjct  500  QKRAVKFAAPAQLAQSFVTTPPKLRLVTLLSLLRSYISRARRQWQ-HVDHQAGAGRVIVF  558

Query  513  CRTKIDCDNLEQYF---------------------IQQGGGPDKKGHQFSCVCLHGDRKP  551
                   D     F                             +         LHG    
Sbjct  559  MSCTDSVDFHYAAFGGARMNASENDASADVQVQDAQLATHVTSELIPDVPIYRLHGSMTQ  618

Query  552  HERKQNLERF----------KKG-DVRFLICTDVAARGIDIHGVPYVINVTLPDE--KQN  598
             ER  +L+ F          ++G     L+CT VA+RG+D+  V  VI +  P E   + 
Sbjct  619  QERISSLKGFSGIRTKHSAERQGFQGSILLCTSVASRGLDLPEVGCVIQLDPPTEGGIEE  678

Query  599  YVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
            Y+HR+GR  R  R G +  LV  ++     HV  S
Sbjct  679  YLHRVGRTARVGRAGESWLLVLPQELGWVEHVLES  713


 Score = 77.1 bits (188),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 31/135 (23%), Positives = 62/135 (46%), Gaps = 8/135 (6%)

Query  2    AAFSEMGVMPEIAQAV-EEMDW-LLPTDIQAESIPLILG---GGDVLMAAETGSGKTGAF  56
            + F+  G+ P +   +  +M+    PT IQ  ++P +L      D+L+ A+TGSGKT  +
Sbjct  200  SDFASCGLDPLLVYHLASKMNIGSNPTAIQKAALPHLLHPGLDRDILIQAQTGSGKTLTY  259

Query  57   SIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREV  116
             +P++Q +    ++     +   T+    +   +     Y+        +  L  Q++EV
Sbjct  260  LLPIVQSLLPLCEESFID-RSVGTLAIVLAPTRELARQIYEVLEKLVSLALSLKEQNQEV  318

Query  117  KEWHGCRATKGLMKG  131
            +     R T+ L+ G
Sbjct  319  EG--TVRRTRWLVPG  331


>sp|A7TT88|ROK1_VANPO ATP-dependent RNA helicase ROK1 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=ROK1 PE=3 SV=1
Length=570

 Score = 213 bits (542),  Expect = 4e-59, Method: Composition-based stats.
 Identities = 114/501 (23%), Positives = 189/501 (38%), Gaps = 69/501 (14%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
            G+D+ L       +  +  F   +L N  L  N   E      +   +AL+   D     
Sbjct  119  GEDIPLPIGSFEDLITRFSFDKRLLNN--LILNHFTEPTPIQCEAIPLALNN-RDMLACA  175

Query  269  SQHSGNAQVTQTKFLPN--------APKALIVEPSRELAEQTLNNIKQFKKYIDNPK---  317
               SG         +            K LI+ P++ELA Q      +    I   K   
Sbjct  176  PTGSGKTLAFLIPLIQQVINDKDTQGLKGLIISPTKELANQIFLECIKLSNRIFLDKKRP  235

Query  318  LRELLIIGGVAARDQLSVLE-NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL  376
            L+  L+   ++A+ +  V+     DI+V TP RL D+V    L+LSQV+ L+ DEAD L 
Sbjct  236  LQVALLSKSLSAKLRNKVISDKKYDIIVSTPLRLIDVVKNEALDLSQVKHLIFDEADKLF  295

Query  377  SQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDS  436
             + + +  + + +     +         + SAT+ S +V+++++ IM  P  V +  +++
Sbjct  296  DKTFVEQSDDILSSCSHSSLRKS-----MFSATIPS-NVEEIAKSIMMDPVRVIIGHKEA  349

Query  437  VPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEY  496
               ++   +V    +  +L             +  K   + G   P              
Sbjct  350  ANTSIEQKLVFCGNEEGKL-------------IAIKQLVQEGEFKP--------------  382

Query  497  AVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQ  556
                         IIF  +      L    +             +   +H +R   +R +
Sbjct  383  -----------PVIIFLESITRAKALYHEMMYD---------SLNVDVIHAERTQVQRNK  422

Query  557  NLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAI  616
             +ERFK GD+  LI TDV ARG+D  GV  VIN  +P   Q YVHRIGR GR  R G A+
Sbjct  423  IIERFKSGDLWCLITTDVLARGVDFKGVNLVINYDVPRTAQAYVHRIGRTGRGGRSGKAV  482

Query  617  SLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLN-CTISQVEP  675
            +    E       + +   +         +    +   E +L+ +   H     IS V  
Sbjct  483  TFYTKEDSIAIKPIINVMKQSGSEISEWMEKVSKMTKKEKELVKKGRAHSERKQISTVPK  542

Query  676  DIKVPVDEFDGKVTYGQKRAA  696
              K+        +   +KR A
Sbjct  543  IDKIKRKRKLEMIQASKKRKA  563


 Score = 88.6 bits (218),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 43/91 (47%), Gaps = 6/91 (7%)

Query  1    MAAFSEM----GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
            + +F ++         +   +    +  PT IQ E+IPL L   D+L  A TGSGKT AF
Sbjct  126  IGSFEDLITRFSFDKRLLNNLILNHFTEPTPIQCEAIPLALNNRDMLACAPTGSGKTLAF  185

Query  57   SIPVIQIVYETLKDQQEGKKGKTTIKTGASV  87
             IP+IQ V    KD Q G KG     T    
Sbjct  186  LIPLIQQVI-NDKDTQ-GLKGLIISPTKELA  214


>sp|A6SNX1|DBP9_BOTFB ATP-dependent RNA helicase dbp9 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=dbp9 PE=3 SV=2
Length=607

 Score = 214 bits (544),  Expect = 4e-59, Method: Composition-based stats.
 Identities = 99/490 (20%), Positives = 177/490 (36%), Gaps = 49/490 (10%)

Query  197  DIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFV  256
            D  K +V F+     LGL   +   +  Q      ++++  +                 +
Sbjct  18   DAIKENVTFAS----LGLDARLLQGIAKQNFQSPTLVQSKAIPLTL--------EGRDIL  65

Query  257  ALSKAPDGYIVKSQHSGNAQVTQTKFLP--NAPKALIVEPSRELAEQTLNNIKQFKKYID  314
            A +K   G            + + K L       ALI+ P+RELA+Q    ++ F  +  
Sbjct  66   ARAKTGSGKTAAYLLPILHSILKRKELSSTQCTTALILVPTRELADQVYKTVESFTAFCA  125

Query  315  NPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADG  374
               +R + +   V+   Q S+L +  DIV+ TP R     +T  L+L+ +  +V+DEAD 
Sbjct  126  -KDVRAVNLTQRVSDAVQRSLLADSPDIVIATPARASLNANTSALSLANLTHMVIDEADL  184

Query  375  LLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE  434
            +LS GY + +  +   +P      K +Q ++ SATL S +V+ L       P  + L+  
Sbjct  185  VLSYGYDEDLQNVAKIMP------KGVQTVLMSATLTS-EVETLKGLFCRNPEVLKLEEA  237

Query  435  DSVPDTVHHVVVPVNPKTD-RLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK  493
            +   + V   VV         L   + K  +                  +++ E      
Sbjct  238  EDEGEGVSQFVVKCAEDEKFLLTYVIFKLKLIKGKCIIFVGDIDRCYRLKLFLEQFGTRS  297

Query  494  GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
                 +     ++     F +   D           G   + K        +  D    E
Sbjct  298  CILNSQLPVNSRIHVVEEFNKNVYDIIIASDEHEVLGDEDEPKSGD--AEEVEADDADEE  355

Query  554  RKQNLERFKKGDVRFLICTDV--------AARGIDIHGVPYVINVTLPDEKQNYVHRIGR  605
            ++   +  K+                    +RGID   V  V+N  LP   ++Y HRIGR
Sbjct  356  KEDAKDAKKETKQPSKKKQKTGKKDKEYGVSRGIDFKNVACVLNFDLPTSSKSYTHRIGR  415

Query  606  VGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEH  665
              RA + G+A+S V   +                  R  +        N+ ++L++I +H
Sbjct  416  TARAGQTGMALSFVIPSE----------------QYRKHKPTSIESAKNDEKVLAKIVKH  459

Query  666  LNCTISQVEP  675
                  +V+P
Sbjct  460  QAKKGKEVKP  469


 Score = 103 bits (256),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 4/102 (4%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F+ +G+   + Q + + ++  PT +Q+++IPL L G D+L  A+TGSGKT A+ +P++ 
Sbjct  25   TFASLGLDARLLQGIAKQNFQSPTLVQSKAIPLTLEGRDILARAKTGSGKTAAYLLPILH  84

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
             + +    ++E    + T         +     Y    +F  
Sbjct  85   SILK----RKELSSTQCTTALILVPTRELADQVYKTVESFTA  122


>sp|Q54EC2|DDX55_DICDI Probable ATP-dependent RNA helicase ddx55 
OS=Dictyostelium discoideum OX=44689 GN=ddx55 PE=3 SV=1
Length=663

 Score = 215 bits (547),  Expect = 4e-59, Method: Composition-based stats.
 Identities = 91/448 (20%), Positives = 163/448 (36%), Gaps = 96/448 (21%)

Query  262  PDGYIVKSQHSGNAQV--TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPK--  317
              G  +        ++   +T        ++I+ P+RELA Q    + +F   ++     
Sbjct  57   GSGKTLAFVIPIIEKILKRETNLKKTDIASIIISPTRELAIQIQQVLLEFLNDLNRIDDQ  116

Query  318  ---------------------------------------LRELLIIGGVAARDQLSVLEN  338
                                                   +  LL+IGG      L   +N
Sbjct  117  NDLENIKTLEDELLEEQEEEENEKEEEEIEKKKKKKKIEISSLLLIGGTDIYQDLVNYKN  176

Query  339  -GVDIVVGTPGRLDDLV-----STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP  392
             G +I++GTPGR D+ +     +  +    +   L+LDEAD LL  G+   IN +  ++P
Sbjct  177  YGGNILIGTPGRTDEFLTRVVRNDQQFKFKEFEMLILDEADRLLDMGFHLPINSILLKLP  236

Query  393  QVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKT  452
                  K+ +  + SAT  + +VK+L+   M  P  V +        +V H+        
Sbjct  237  ------KQRRTGLFSAT-QTSEVKELARTGMRNPFKVSV--------SVKHI--------  273

Query  453  DRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF  512
                    ++H         DN        E  ++ +  L        +     ++ II+
Sbjct  274  --------ETHEDQSIPTTLDNRYMIVPVEERLNQLVHFL--------LNHIDKNKIIIY  317

Query  513  CRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICT  572
              T    D   +          K         LHG     +R +  + F +     L+ T
Sbjct  318  FLTCSTVDYFFKILQSVKVLSGK-----PFFSLHGKAPHSQRIKVFDSFSQATNGCLLST  372

Query  573  DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
            D+AARG+DI  V +V+    P + + +VHRIGR  R  R G A+  ++ E++     +  
Sbjct  373  DLAARGLDIPNVDWVLQYDSPQDPKAFVHRIGRTARMGRDGNALIFLSPEEDSY---IEF  429

Query  633  SRGKGCYNTRLKEDGGCTIWYNEMQLLS  660
             + K      + +    T    E++ +S
Sbjct  430  LKIKKVPLVEMVKAENVTNVLPEIKKIS  457


 Score = 87.5 bits (215),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 22/101 (22%), Positives = 41/101 (41%), Gaps = 4/101 (4%)

Query  9    VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETL  68
            +       +  + +   + +Q+  IPL +   DVL+ A TGSGKT AF IP+I+ + +  
Sbjct  17   LSDSTLNTINRLGFKSMSPVQSAVIPLFMSNKDVLVEACTGSGKTLAFVIPIIEKILK--  74

Query  69   KDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGL  109
              ++   K         S   +  +        F    + +
Sbjct  75   --RETNLKKTDIASIIISPTRELAIQIQQVLLEFLNDLNRI  113


>sp|P26802|DDX51_DROME Probable ATP-dependent RNA helicase Dbp73D 
OS=Drosophila melanogaster OX=7227 GN=Dbp73D PE=2 SV=3
Length=687

 Score = 215 bits (547),  Expect = 5e-59, Method: Composition-based stats.
 Identities = 111/533 (21%), Positives = 186/533 (35%), Gaps = 73/533 (14%)

Query  217  EIPPHMKNQALFPACVLKNAELKFNFGE--EEFKFPPKDGFVALSKAPDGYIVKSQHSGN  274
            +    MK + LFP   ++   + +      +   F P+D  V+      G  +       
Sbjct  150  QALKQMKIKRLFP---VQKQVIPWILEAHAKPPPFRPRDICVSAP-TGSGKTLAFAIPIV  205

Query  275  AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLS  334
              ++Q   +    +AL+V P  ELA Q    I +        +L   L+       D+  
Sbjct  206  QLLSQR--VDCKVRALVVLPVAELALQVYRVISEL---CSKTELEVCLLSKQHKLEDEQE  260

Query  335  VL--------ENGVDIVVGTPGRLDDLVS-TGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
             L         +  DIVV TPGRL D +  T    L  ++FLV+DEAD ++   + +++ 
Sbjct  261  KLVEQYKGKYYSKADIVVTTPGRLVDHLHATKGFCLKSLKFLVIDEADRIMDAVFQNWLY  320

Query  386  RMHNQIPQVT------------------SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPT  427
             + + + + T                  S GK+   ++ SATL S D +KL +  +  P 
Sbjct  321  HLDSHVKETTDQLLAGTQAPLCYAELQASFGKQPHKLLFSATL-SQDPEKLQDLRLFQPR  379

Query  428  WVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSE  487
                              V   P      E    +   TD           A   E +  
Sbjct  380  LFAT--------------VLTMPVLKDATEEGADTEALTDPGQFVGRYTTPAELTEQYCV  425

Query  488  AIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHG  547
                LK       ++++K  + + F  +      L             K        L G
Sbjct  426  TELRLKPLTVFALVEKYKWKRFLCFTNSSDQATRLTFVLKVLFQKYSTK-----VSELSG  480

Query  548  DRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVG  607
            +     R + L  F  G +  LIC+D  ARGID+  V  V++   P     Y+HR+GR  
Sbjct  481  NLSAKVRNERLRDFAAGKINGLICSDALARGIDVADVDVVLSYETPRHITTYIHRVGRTA  540

Query  608  RAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLN  667
            RA R G A++++  +   ++  + S   KG     +       I +          E+  
Sbjct  541  RAGRKGTAVTVLTEQDMTLFKKILSDANKGLGE-EIHVSPDIEIQHA--------VEYKE  591

Query  668  CTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEK  720
                     +K    +   K     K       +K   +    TV+ L  +EK
Sbjct  592  ALAGLRSEKVKNKNQKMAEKNRVATKALI----HKKQEE--TATVRPLTLMEK  638


 Score = 68.6 bits (166),  Expect = 1e-10, Method: Composition-based stats.
 Identities = 31/149 (21%), Positives = 58/149 (39%), Gaps = 18/149 (12%)

Query  9    VMPEIAQAVEEMDWLLPTDIQAESIPLILGG---------GDVLMAAETGSGKTGAFSIP  59
            +     QA+++M       +Q + IP IL            D+ ++A TGSGKT AF+IP
Sbjct  144  LEKYTCQALKQMKIKRLFPVQKQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIP  203

Query  60   VIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD-GLCCQSREVKE  118
            ++Q++ +        +            + +  +  Y   S     ++  +C  S++ K 
Sbjct  204  IVQLLSQ--------RVDCKVRALVVLPVAELALQVYRVISELCSKTELEVCLLSKQHKL  255

Query  119  WHGCRATKGLMKGKHYYEVSCHDQGLCRV  147
                       KGK+Y +         R+
Sbjct  256  EDEQEKLVEQYKGKYYSKADIVVTTPGRL  284


>sp|Q66HG7|DDX59_RAT Probable ATP-dependent RNA helicase DDX59 
OS=Rattus norvegicus OX=10116 GN=Ddx59 PE=2 SV=1
Length=589

 Score = 213 bits (541),  Expect = 6e-59, Method: Composition-based stats.
 Identities = 77/414 (19%), Positives = 155/414 (37%), Gaps = 95/414 (23%)

Query  228  FPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDG-YIVKSQHSGNAQ--------VT  278
            F  C      L  N  +  ++ P       +     G  I+ S  +G+ +        + 
Sbjct  205  FEHCGFPE-TLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVII  263

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
            +       P ALI+ P+RELA Q     K+  + +  P+++ +L++GG+    QL  L+ 
Sbjct  264  RALPEDKTPSALILTPTRELAIQIERQAKELMRGL--PRMKTVLLVGGLPLPPQLYRLQQ  321

Query  339  GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
             V                              +AD +L  G+   +  +    P      
Sbjct  322  HV------------------------------KADTMLKMGFQQQVLDVLEHTP------  345

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER  458
               Q ++ SAT+    + +L+++++H P  +    ++    +V  +++ V          
Sbjct  346  SDCQTVLVSATIPD-SIDQLADQLLHNPVRIVTGDKNLPCSSVRQIILWVE---------  395

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
                                   P    +  +IL  +   +          ++F   K+ 
Sbjct  396  ----------------------DPAKKKKLFEILNDQKLFK-------PPVLVFVDCKLG  426

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
             D L +          +K    S   +H ++   ER++ L+   +GD   ++ T +  RG
Sbjct  427  ADLLSE--------AVQKITGLSSTSIHSEKSQVERREILKGLLEGDYEVVVSTGILGRG  478

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
            +D+  V  V+N  +P     YVH++GRVGR  + G AI+ +    +++++ V  
Sbjct  479  LDLVNVKLVVNFDMPSSLDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDVAK  532


 Score = 96.7 bits (239),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 9/99 (9%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F   G    + Q +++  + +PT IQ + IP+ L G D+L +A+TGSGKT AF +PVI  
Sbjct  205  FEHCGFPETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIIR  264

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
                        + KT      +   +  +    +    
Sbjct  265  AL---------PEDKTPSALILTPTRELAIQIERQAKEL  294


>sp|Q7FGZ2|RH1_ARATH DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis 
thaliana OX=3702 GN=RH1 PE=2 SV=3
Length=522

 Score = 211 bits (536),  Expect = 8e-59, Method: Composition-based stats.
 Identities = 88/419 (21%), Positives = 156/419 (37%), Gaps = 45/419 (11%)

Query  276  QVTQTKFLPNAPKALIVEPSRELAEQTLNNIK---------------------QFKKYID  314
            Q+  ++ +    +AL+V P+R+LA Q  +                        +  + I 
Sbjct  95   QLLASRPV-RCLRALVVLPTRDLALQVKDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIK  153

Query  315  NPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVS-TGKLNLSQVRFLVLDEAD  373
             PKL   +        D    LE+ VDI+V TPGRL D ++ T    L  +R+LV+DE D
Sbjct  154  TPKLDAGICY---DPDDLSQNLESAVDILVATPGRLMDHINNTKGFTLEHLRYLVVDETD  210

Query  374  GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC--SATLHSFDVKKLSEKIMHFPTWVDL  431
             LL + Y  ++  +   + Q + D           SA      V++ S         V+ 
Sbjct  211  RLLREAYQSWLPTVLQ-LTQTSDDSLFPSFTPFVPSAFGSLQTVRRQS---------VER  260

Query  432  KGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
              +      +  +V+      D         H            R       +       
Sbjct  261  GFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTGGSRYRLPEKLECLRLICETG  320

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
            +K  Y V  +K  + ++ IIF  +      L +     G        +       G    
Sbjct  321  MKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFGDP------KIKAKEYSGGLNQ  374

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
              R + L+ F+KGD++ L+ +D   RG+D+ GV  VIN  +P   + ++HR GR  RA +
Sbjct  375  SLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTFIHRAGRTARAGQ  434

Query  612  MGLAISLVATEKEKVWYHVCSSRGK-GCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCT  669
             G   +L++  + + +  +    G   C    +      +I       L +++E +   
Sbjct  435  AGRCFTLLSNHEVRRFSKLLEKVGSDSCPIYPIPPTSLDSIRATYTPALEKLKELVESE  493


 Score = 52.4 bits (124),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 13/110 (12%)

Query  9    VMPEIAQAVEEMDWLLPTDIQAESIPLILG----GGDVLMAAETGSGKTGAFSIPVIQIV  64
            + P++ +A+E M       +Q       +G      D+ + + TGSGKT ++++P++Q++
Sbjct  38   LNPKLKKALENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLL  97

Query  65   YETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSR  114
                      +  +              +   D   A A    GL   S 
Sbjct  98   A--------SRPVRCLRALVVLPTRDLALQVKDVFDAIAPAV-GLSVGSA  138


>sp|Q06218|DBP9_YEAST ATP-dependent RNA helicase DBP9 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP9 
PE=1 SV=1
Length=594

 Score = 212 bits (540),  Expect = 1e-58, Method: Composition-based stats.
 Identities = 113/609 (19%), Positives = 203/609 (33%), Gaps = 144/609 (24%)

Query  185  EFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGE  244
             +      G Y+D            +   L   +   +KN       ++++  +      
Sbjct  2    SYEKKSVEGAYID--DSTTF-----EAFHLDSRLLQAIKNIGFQYPTLIQSHAIPLAL--  52

Query  245  EEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKF-----LPNAPKALIVEPSRELA  299
                   K   +A +    G  +         + + K        N    +I+ P+RELA
Sbjct  53   -----QQKRDIIAKAATGSGKTLAYLIPVIETILEYKKTIDNGEENGTLGIILVPTRELA  107

Query  300  EQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTG--  357
            +Q  N +++   Y     +R L I   ++     ++L +  +I+VGTPG+L DL+ T   
Sbjct  108  QQVYNVLEKLVLYCS-KDIRTLNISSDMSDSVLSTLLMDQPEIIVGTPGKLLDLLQTKIN  166

Query  358  KLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKK  417
             ++L++++FLV+DE D +L+ GY D +N++   +P      K LQ  + SATL+  D++ 
Sbjct  167  SISLNELKFLVVDEVDLVLTFGYQDDLNKIGEYLP----LKKNLQTFLMSATLND-DIQA  221

Query  418  LSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRP  477
            L +K    P  +    E+                 ++   +L + +++            
Sbjct  222  LKQKFCRSPAILKFNDEE----------------INKNQNKLLQYYVKV-----------  254

Query  478  GANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKG  537
                    SE  K L     V         + +IF         L+    Q G       
Sbjct  255  --------SEFDKFL--LCYVIFKLNLIKGKTLIFVNNIDRGYRLKLVMEQFG-------  297

Query  538  HQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA----------------------  575
                   L+ +   + R+  +++F K   + LI TD                        
Sbjct  298  --IKSCILNSELPVNSRQHIVDQFNKNVYQLLIATDDTEYIKEEDDEIEEGHNTENQEEK  355

Query  576  ----------------------------ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVG  607
                                        +RG+D   V  V+N  LP   ++YVHR+GR  
Sbjct  356  SLEGEPENDKKPSKKKKVQVKKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRVGRTA  415

Query  608  RAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLN  667
            R  + G AIS V              +       +  E     I   + +L  E++ +  
Sbjct  416  RGGKTGTAISFVVP-----LKEFGKHKPSMLQTAKKDERILSRIIKQQSKLGLELQPY--  468

Query  668  CTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKEAQTSFL  727
                               +V   + R   G      V I    V+EL      ++    
Sbjct  469  --------------KFDQKQVEAFRYRMEDGFRAVTQVAIREARVKELKQELLASEKLKR  514

Query  728  HLGYLPNQL  736
            H    P +L
Sbjct  515  HFEENPKEL  523


 Score = 104 bits (258),  Expect = 7e-22, Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 2/102 (2%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILG-GGDVLMAAETGSGKTGAFSIPV  60
              F    +   + QA++ + +  PT IQ+ +IPL L    D++  A TGSGKT A+ IPV
Sbjct  17   TTFEAFHLDSRLLQAIKNIGFQYPTLIQSHAIPLALQQKRDIIAKAATGSGKTLAYLIPV  76

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            I+ + E  K    G++   T+        +     Y+     
Sbjct  77   IETILEYKKTIDNGEEN-GTLGIILVPTRELAQQVYNVLEKL  117


>sp|A7A1G0|DBP9_YEAS7 ATP-dependent RNA helicase DBP9 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DBP9 PE=3 SV=1
Length=594

 Score = 212 bits (540),  Expect = 1e-58, Method: Composition-based stats.
 Identities = 113/609 (19%), Positives = 203/609 (33%), Gaps = 144/609 (24%)

Query  185  EFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGE  244
             +      G Y+D            +   L   +   +KN       ++++  +      
Sbjct  2    SYEKKSVEGAYID--DSTTF-----EAFHLDSRLLQAIKNIGFQYPTLIQSHAIPLAL--  52

Query  245  EEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKF-----LPNAPKALIVEPSRELA  299
                   K   +A +    G  +         + + K        N    +I+ P+RELA
Sbjct  53   -----QQKRDIIAKAATGSGKTLAYLIPVIETILEYKKTIDNGEENGTLGIILVPTRELA  107

Query  300  EQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTG--  357
            +Q  N +++   Y     +R L I   ++     ++L +  +I+VGTPG+L DL+ T   
Sbjct  108  QQVYNVLEKLVLYCS-KDIRTLNISSDMSDSVLSTLLMDQPEIIVGTPGKLLDLLQTKIN  166

Query  358  KLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKK  417
             ++L++++FLV+DE D +L+ GY D +N++   +P      K LQ  + SATL+  D++ 
Sbjct  167  SISLNELKFLVVDEVDLVLTFGYQDDLNKIGEYLP----LKKNLQTFLMSATLND-DIQA  221

Query  418  LSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRP  477
            L +K    P  +    E+                 ++   +L + +++            
Sbjct  222  LKQKFCRSPAILKFNDEE----------------INKNQNKLLQYYVKV-----------  254

Query  478  GANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKG  537
                    SE  K L     V         + +IF         L+    Q G       
Sbjct  255  --------SEFDKFL--LCYVIFKLNLIKGKTLIFVNNIDRGYRLKLVMEQFG-------  297

Query  538  HQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA----------------------  575
                   L+ +   + R+  +++F K   + LI TD                        
Sbjct  298  --IKSCILNSELPVNSRQHIVDQFNKNVYQLLIATDDTEYIKEEDDEIEEGHNTENQEEK  355

Query  576  ----------------------------ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVG  607
                                        +RG+D   V  V+N  LP   ++YVHR+GR  
Sbjct  356  SLEGEPENDKKPSKKKKVQVKKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRVGRTA  415

Query  608  RAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLN  667
            R  + G AIS V              +       +  E     I   + +L  E++ +  
Sbjct  416  RGGKTGTAISFVVP-----LKEFGKHKPSMLQTAKKDERILSRIIKQQSKLGLELQPY--  468

Query  668  CTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKEAQTSFL  727
                               +V   + R   G      V I    V+EL      ++    
Sbjct  469  --------------KFDQKQVEAFRYRMEDGFRAVTQVAIREARVKELKQELLASEKLKR  514

Query  728  HLGYLPNQL  736
            H    P +L
Sbjct  515  HFEENPKEL  523


 Score = 104 bits (258),  Expect = 7e-22, Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 2/102 (2%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILG-GGDVLMAAETGSGKTGAFSIPV  60
              F    +   + QA++ + +  PT IQ+ +IPL L    D++  A TGSGKT A+ IPV
Sbjct  17   TTFEAFHLDSRLLQAIKNIGFQYPTLIQSHAIPLALQQKRDIIAKAATGSGKTLAYLIPV  76

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            I+ + E  K    G++   T+        +     Y+     
Sbjct  77   IETILEYKKTIDNGEEN-GTLGIILVPTRELAQQVYNVLEKL  117


>sp|P34668|YO12_CAEEL Putative ATP-dependent RNA helicase ZK686.2 
OS=Caenorhabditis elegans OX=6239 GN=ZK686.2 PE=3 SV=2
Length=593

 Score = 211 bits (538),  Expect = 2e-58, Method: Composition-based stats.
 Identities = 98/454 (22%), Positives = 182/454 (40%), Gaps = 56/454 (12%)

Query  239  KFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQ------VTQTKFLPNAP-KALI  291
               +      F        L +  D  I     SG         +      P+   +A+I
Sbjct  135  PVQYAVLPSLFFEIRSPPPL-RPRDVAIAAPTGSGKTICYVLPVLAAVGSKPSKILQAVI  193

Query  292  VEPSRELAEQTLNNIKQFKKYIDNPKL-RELLIIGGVAARDQLSVL-ENGVDIVVGTPGR  349
            + P + L  Q ++   +FK++ D   + + + + G      +   L  +  +++V TP R
Sbjct  194  LVPVQTLVAQIVD---EFKRWNDESGVAKVVSLSGANDFEKEARQLASDPPNVIVATPAR  250

Query  350  LDDLVSTG---KLNLSQVRFLVLDEADGLLSQGYSDFINRM---------HNQIPQVTSD  397
            L   +++     ++LS++RFL++DEAD +      ++++ +            +  +   
Sbjct  251  LVQHLTSKIPPPIDLSKLRFLIVDEADRMGKLMREEWLDLVEFLCGGMERVACLKDIIRQ  310

Query  398  GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWE  457
             +  Q IV SATL S DV++L    +  P                  V  +     ++  
Sbjct  311  RRAPQKIVLSATL-SKDVEELHLWNLFKPRLFSATAVS---------VKDITSGIPQVDH  360

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
              G+  + +   H    T P  +   ++ +             I  +K ++ +IF     
Sbjct  361  VSGRLALPSSISHRLVVTDPKFHPLAVYQQ-------------ITRNKFNRTLIFVNEVS  407

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR  577
              + L     +     D+    +    L G R    R + LE+F K + R LIC+DV AR
Sbjct  408  SSNRLAHVLKEL--CKDQFEVDYFTAQLFGKR----RYKMLEKFNKNENRVLICSDVLAR  461

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
            G D++ V  VIN  LP + + +VHR GR GRA + G  IS+   E ++++  +       
Sbjct  462  GTDLNKVDCVINYNLPADDKLFVHRAGRTGRAGQDGYVISVGDKESKRLFVKMLKV--TN  519

Query  638  CYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTIS  671
             +   ++E     I+  +M   S+  E L  T+S
Sbjct  520  LWGDTVEEQMEEYIFEKDMDRYSKALESLKATVS  553


 Score = 43.2 bits (100),  Expect = 0.010, Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (49%), Gaps = 9/47 (19%)

Query  27   DIQAESIPLI---------LGGGDVLMAAETGSGKTGAFSIPVIQIV  64
             +Q   +P +         L   DV +AA TGSGKT  + +PV+  V
Sbjct  135  PVQYAVLPSLFFEIRSPPPLRPRDVAIAAPTGSGKTICYVLPVLAAV  181


>sp|Q6CDN5|DBP6_YARLI ATP-dependent RNA helicase DBP6 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP6 PE=3 
SV=1
Length=607

 Score = 211 bits (538),  Expect = 2e-58, Method: Composition-based stats.
 Identities = 100/504 (20%), Positives = 199/504 (39%), Gaps = 94/504 (19%)

Query  183  GEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNF  242
               +   D +G + + D      SKN         +  ++       A  ++ A + +  
Sbjct  178  NATYVEIDDVGSFDEFD-----LSKN---------MMKNLDTLGYTKAFSVQKAVIPWLL  223

Query  243  GEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNA--------QVTQTKFLPNAPKALIVEP  294
             +++   P         + PD  +  S  SG          +  + + +P   +A++V P
Sbjct  224  AQQKLLAP--------DRKPDLLVSASTGSGKTATYGIPIIEKLRDRIVPR-IRAVVVLP  274

Query  295  SRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV  354
            ++ L  Q  + ++   K      L  + +    + + + +VLE   DIVV  PGRL + V
Sbjct  275  TKPLVMQVRDVLENLSK---GSSLSVVALRNDRSTKRERAVLET-ADIVVAAPGRLVEQV  330

Query  355  STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG--------KRLQVIVC  406
                   S + FLV+DEAD LL Q Y D+ + + N   +  +          + +Q ++ 
Sbjct  331  KENPELFSYIEFLVVDEADRLLGQDYYDWASVLQNNQQRAQAGKTNLTEHYVRNMQTLIF  390

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDS--VPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            SATL + + + ++   +H P    +   DS  +P ++  +V  V+     L         
Sbjct  391  SATL-TANPEHIASMDIHNPGVFVIGSSDSYSIPKSLTEIVTHVSAAEKPLM--------  441

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                                                + +  +++ ++F ++      + +
Sbjct  442  --------------------------------LCELLVQRDINRGVVFTKSSETAARVAR  469

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
                +    D     +    +  +     R++++++F  G + FL+CTD+ +RGID   V
Sbjct  470  MM--EIMDADIFHKDWKIAAVSAETSSVHRRRSMKQFIDGKIDFLVCTDLVSRGIDFV-V  526

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLK  644
              VIN  +P  K+ YVHR+GR  RA R G A + +    E  W+      G+    T+  
Sbjct  527  DNVINYDIPSGKREYVHRVGRTARAGREGNAYTFLTGSGEAKWFR---EIGEFVGRTQEV  583

Query  645  EDGGCTIWYNE--MQLLSEIEEHL  666
            +       +N+   + L+++EE +
Sbjct  584  DATHINSSHNDGYQEALAKLEEEV  607


 Score = 72.5 bits (176),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 51/377 (14%), Positives = 118/377 (31%), Gaps = 62/377 (16%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGG---------DVLMAAETGSG  51
            + +F E  +   + + ++ + +     +Q   IP +L            D+L++A TGSG
Sbjct  187  VGSFDEFDLSKNMMKNLDTLGYTKAFSVQKAVIPWLLAQQKLLAPDRKPDLLVSASTGSG  246

Query  52   KTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS----D  107
            KT  + IP+I+ + +        +                 M   D     + GS     
Sbjct  247  KTATYGIPIIEKLRD--------RIVPRIRAVVVLPTKPLVMQVRDVLENLSKGSSLSVV  298

Query  108  GLCCQSREVKEWHGCRATKGLMK--GKHYYEVSCHDQGLCRVGW-STMQASLDLGTDKFG  164
             L       +E         ++   G+   +V  + +    + +    +A   LG D + 
Sbjct  299  ALRNDRSTKRERAVLETADIVVAAPGRLVEQVKENPELFSYIEFLVVDEADRLLGQDYYD  358

Query  165  FGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKN  224
            +         +N+Q    G+       +      +   + FS                 N
Sbjct  359  WA----SVLQNNQQRAQAGKTNLTEHYV-----RNMQTLIFS------------ATLTAN  397

Query  225  QALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP  284
                 +  + N  +      + +  P      +L++         +      + +     
Sbjct  398  PEHIASMDIHNPGVFVIGSSDSYSIP-----KSLTEIVTHVSAAEKPL---MLCELLVQR  449

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GV  340
            +  + ++   S E A +    ++     I +   +   +    ++  +   ++      +
Sbjct  450  DINRGVVFTKSSETAARVARMMEIMDADIFHKDWKIAAVSAETSSVHRRRSMKQFIDGKI  509

Query  341  DIVVGTPGRLDDLVSTG  357
            D +V T     DLVS G
Sbjct  510  DFLVCT-----DLVSRG  521


>sp|Q0CY48|DBP9_ASPTN ATP-dependent RNA helicase dbp9 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dbp9 
PE=3 SV=2
Length=619

 Score = 212 bits (539),  Expect = 3e-58, Method: Composition-based stats.
 Identities = 110/564 (20%), Positives = 194/564 (34%), Gaps = 65/564 (12%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
             + + L L   +   +  +      +++   +                 +A +K   G  
Sbjct  27   LDFESLNLDPRLRQALVKEKFTKPTLVQAKAIPLAL--------EGKDILARAKTGSGKT  78

Query  267  VKSQHSGNAQVTQTKFLPN---APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLI  323
                      + Q K       A   LI+ P+RELAEQ  N I  F  +     +R + +
Sbjct  79   AAYVLPILQTILQKKANDPSLKATTGLILVPTRELAEQVQNVITTFAAFC-GKDVRSVNL  137

Query  324  IGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDF  383
               V+   Q ++L +  D++V TP R+   + +  L+L  +  LV+DEAD +LS GY + 
Sbjct  138  TQKVSDAVQRTMLADYPDLIVSTPSRVIANLGSSALSLENLTHLVIDEADLVLSYGYDED  197

Query  384  INRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHH  443
            IN +   IP      + +Q  + SATL + +V  L       P  + L+ +D     V  
Sbjct  198  INALAKAIP------RGVQTFLMSATL-TAEVDTLKGLFCRSPVILKLEDKDDQGSGVSQ  250

Query  444  VVVPVNPKTDRLWERLGKSHIRTD-----DVHAKDNTRPGANSPEMWSEAIKILKGEYAV  498
             VV        L   +              V   D         E +     +L  E  V
Sbjct  251  FVVKCAEDEKFLLTYVIFKLQLIKGKVIIFVGDVDRCYRVKLFLEQFGIKSCVLNSELPV  310

Query  499  RAIKE--HKMDQAIIFCRTKIDCDNLEQYFIQQ--------------GGGPDKKGHQFSC  542
             +      + ++ +       D   +      +              G   + +G     
Sbjct  311  NSRLHVVQEFNKGVYDIIIAADEQEVMGARKSKKSKEAEENDAGEAAGSSDEDEGEAQKP  370

Query  543  VCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHR  602
                 D+   +R++   + K   +         +RGID   V  V+N  LP   ++Y HR
Sbjct  371  STTRSDKPSEKRRKTAGKDKDYGI---------SRGIDFQNVACVLNFDLPTTSKSYTHR  421

Query  603  IGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEI  662
            IGR GRA + G+A+S V              +       +  E     I   + +L  E+
Sbjct  422  IGRTGRAGKTGMALSFVVPAD-----QFGKHKPTSFPTAKHDETVLAKITKRQAKLGHEV  476

Query  663  EEHLNCTISQVEPDIKVPVDEFDG----KVTYGQKR-----AAGGGSYKGHVDILAPTVQ  713
            +   +  + QV+       D         V   + R            K H +     ++
Sbjct  477  KP-YHFEMKQVDAFRYRMTDALRSITRLAVQEARAREIRQELIKSEKLKRHFEENPEELR  535

Query  714  ELA-ALEKEAQTSFLHLGYLPNQL  736
            +L    E  +     HL ++P+ L
Sbjct  536  QLRHDDELRSARIQPHLKHIPDYL  559


 Score = 102 bits (255),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 29/101 (29%), Positives = 50/101 (50%), Gaps = 3/101 (3%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F  + + P + QA+ +  +  PT +QA++IPL L G D+L  A+TGSGKT A+ +P++Q 
Sbjct  29   FESLNLDPRLRQALVKEKFTKPTLVQAKAIPLALEGKDILARAKTGSGKTAAYVLPILQT  88

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            + +   +    K    T         +      +  + FA 
Sbjct  89   ILQKKANDPSLK---ATTGLILVPTRELAEQVQNVITTFAA  126


>sp|A7EM78|DBP9_SCLS1 ATP-dependent RNA helicase dbp9 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=dbp9 PE=3 SV=1
Length=607

 Score = 211 bits (538),  Expect = 3e-58, Method: Composition-based stats.
 Identities = 98/537 (18%), Positives = 184/537 (34%), Gaps = 46/537 (9%)

Query  208  NGK----DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPD  263
            NGK     LGL   +   +  Q      ++++  +                 +A +K   
Sbjct  21   NGKATFASLGLDARLLQGIAKQNFQSPTLVQSKAIPLTL--------EGRDILARAKTGS  72

Query  264  GYIVKSQHSGNAQVTQTKFLP--NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLREL  321
            G            + + K L       ALI+ P+RELA+Q    ++ F  +     +R +
Sbjct  73   GKTAAYLLPILHSILKRKELSPTQCTSALILVPTRELADQVYKTVESFTAFCA-KDVRAV  131

Query  322  LIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYS  381
             +   V+   Q S+L +  DIV+ TP R     +T  L L+ +  +V+DEAD +LS GY 
Sbjct  132  NLTQRVSDAVQRSLLADSPDIVIATPARASLNANTSALLLTNLTHMVIDEADLVLSYGYD  191

Query  382  DFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV  441
            + +  +   +P      K +Q ++ SATL S +V+ L       P  + L+  +     V
Sbjct  192  EDLQNVAKIMP------KGVQTVLMSATLTS-EVETLKGLFCRNPEVLKLEEAEDEGKGV  244

Query  442  HHVVVPVNPKTD-RLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRA  500
               VV         L   + K  +                  +++ E           + 
Sbjct  245  SQFVVKCAEDEKFLLVYVIFKLKLIKGKCIIFVGDIDRCYRLKLFLEQFGTRSCILNSQL  304

Query  501  IKEHKMDQAIIFCRTKID---CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQN  557
                ++     F +   D     +  +    +     ++  +       G+++  +  + 
Sbjct  305  PVNSRIHVVEEFNKNVYDIIIASDEHEVLGDEDEPKPEETEEVEADDASGEKEDAKDAKK  364

Query  558  LERFKKGDVRFLICTDV---AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGL  614
              +      +     D     +RGID   V  V+N  LP   ++Y HRIGR  RA + G+
Sbjct  365  ETKQPSKKKQKTGKKDKEYGVSRGIDFKNVACVLNFDLPTSSKSYTHRIGRTARAGQTGM  424

Query  615  AISLVAT----------------EKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
            A+S V                  + EKV   +   + K     +        +     ++
Sbjct  425  ALSFVIPSALYRKHKPTSIESAKDDEKVLAKIIKHQAKKGKEVKPYNFDMKQVDAFRYRM  484

Query  659  LSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAP-TVQE  714
               +    +  + + +            K+    +       +  H   L P  VQ 
Sbjct  485  GDALRAVTSIAVQEAKAREIRQELMKSEKLKRHFEENPSDLYHLRHDGELRPARVQA  541


 Score = 103 bits (256),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 4/103 (4%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            A F+ +G+   + Q + + ++  PT +Q+++IPL L G D+L  A+TGSGKT A+ +P++
Sbjct  24   ATFASLGLDARLLQGIAKQNFQSPTLVQSKAIPLTLEGRDILARAKTGSGKTAAYLLPIL  83

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
              + +    ++E    + T         +     Y    +F  
Sbjct  84   HSILK----RKELSPTQCTSALILVPTRELADQVYKTVESFTA  122


>sp|Q0CQF3|SPB4_ASPTN ATP-dependent rRNA helicase spb4 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=spb4 
PE=3 SV=1
Length=639

 Score = 211 bits (537),  Expect = 7e-58, Method: Composition-based stats.
 Identities = 88/402 (22%), Positives = 157/402 (39%), Gaps = 73/402 (18%)

Query  262  PDGYIVKSQHSGNAQVTQTK--FLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNP---  316
              G  +        ++ + +     +   A+I+ P+RELA Q    +     +       
Sbjct  61   GSGKTLSFLVPVVEKLLRLEEPIKKHHIGAIIISPTRELASQIHQVLLSLLAFHPPSAAA  120

Query  317  -------------------KLRELLIIGG--VAARDQLSVLENGVDIVVGTPGRLDDLVS  355
                               K+   L++GG    A D    L++  ++++ TPGRL +L+S
Sbjct  121  IKPPGEDDAPREKFSASTLKVVPQLLLGGSTTPAEDLSYFLKHSPNVLISTPGRLLELLS  180

Query  356  TGKLNL--SQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSF  413
            +  ++   S    LVLDEAD LL  G+ + +  +  ++P      K+ +  + SA++ S 
Sbjct  181  SPHVHCPQSSFEMLVLDEADRLLDLGFKETLQNILRRLP------KQRRTGLFSASI-SE  233

Query  414  DVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKD  473
             V ++    +  P  V +K + +              +  R    L  +++ T   H   
Sbjct  234  AVDQIVRVGLRNPVKVLVKVKGT-----------SGVQDKRTPASLQMTYLTTPPAHKFL  282

Query  474  NTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGP  533
              RP                    +    +    + I F  T    D L          P
Sbjct  283  TLRP--------------------ILTSLQPTPQKTIFFVSTCSGVDYLAAIL------P  316

Query  534  DKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR-FLICTDVAARGIDIHGVPYVINVTL  592
               G  F  + LHG    + R++N  RF        L+ TDVA+RG+DI  V  V+ +  
Sbjct  317  LLLGDDFQLIPLHGKHPANVRQKNFNRFINAHTPSILLTTDVASRGLDIPSVDLVVQIDP  376

Query  593  PDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            P + + ++HR GR GRA R G+++ L+   +E+ +      R
Sbjct  377  PSDPKTFIHRCGRAGRAGRRGVSVVLLHPGREEDYVSFLEVR  418


 Score = 87.1 bits (214),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 40/94 (43%), Gaps = 4/94 (4%)

Query  9    VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETL  68
            +   +  AV    +   T +QA +IPL +   DV++ A TGSGKT +F +PV++ +    
Sbjct  21   LSEWVLDAVASWGFSKMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLVPVVEKLLRL-  79

Query  69   KDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
               +E  K         S   +     +    + 
Sbjct  80   ---EEPIKKHHIGAIIISPTRELASQIHQVLLSL  110


>sp|A6ZU15|ROK1_YEAS7 ATP-dependent RNA helicase ROK1 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=ROK1 PE=3 SV=1
Length=564

 Score = 209 bits (532),  Expect = 8e-58, Method: Composition-based stats.
 Identities = 105/519 (20%), Positives = 186/519 (36%), Gaps = 80/519 (15%)

Query  192  IGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPP  251
            IG + D+      F +          +  ++          ++   +       +     
Sbjct  117  IGSFEDLISR-FSFDR---------RLLNNLIENGFTEPTPIQCECIPVALNNRD-----  161

Query  252  KDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKK  311
                +A      G  +        Q+   K      K LI+ P++ELA Q      +   
Sbjct  162  ---VLACGPTGSGKTLAFLIPLVQQIIDDKQT-AGLKGLIISPTKELANQIFIECFKLSH  217

Query  312  YIDNPKLRELLIIGGVAARDQLSVLENGV------DIVVGTPGRLDDLVSTGKLNLSQVR  365
             I   K R L +   + ++   + L+N V      DI++ TP RL D+V    L+LS+V+
Sbjct  218  KIFLEKKRPLQV--ALLSKSLGAKLKNKVVSDKKYDIIISTPLRLIDVVKNEALDLSKVK  275

Query  366  FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF  425
             L+ DEAD L  + + +  + + +           L+  + SAT+ S +V+++++ IM  
Sbjct  276  HLIFDEADKLFDKTFVEQSDDILSAC-----REPSLRKAMFSATIPS-NVEEIAQSIMMD  329

Query  426  PTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW  485
            P  V +  +++    +   ++    +  +L             +  +   + G   P   
Sbjct  330  PVRVIIGHKEAANTNIEQKLIFCGNEEGKL-------------IAIRQLVQEGEFKP---  373

Query  486  SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL  545
                                    IIF  +      L    +           + +   +
Sbjct  374  ----------------------PIIIFLESITRAKALYHELMYD---------RINVDVI  402

Query  546  HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR  605
            H +R   +R + +ERFK G++  LICTDV ARGID  GV  VIN  +P   Q YVHRIGR
Sbjct  403  HAERTALQRDRIIERFKTGELWCLICTDVLARGIDFKGVNLVINYDVPGSSQAYVHRIGR  462

Query  606  VGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEH  665
             GR  R G AI+    +       + +   +         D    +   E + +   + H
Sbjct  463  TGRGGRSGKAITFYTKQDSVAIKPIINVMKQSGCEVSEWMDKMAKMTRKEKESIKNGKAH  522

Query  666  LNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGH  704
                     P +         ++    KR       K H
Sbjct  523  KERKQITTVPKMDKAKRRRQQEMIAASKRRKNEELSKKH  561


 Score = 90.2 bits (222),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 29/91 (32%), Positives = 41/91 (45%), Gaps = 6/91 (7%)

Query  1    MAAFSEM----GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
            + +F ++         +   + E  +  PT IQ E IP+ L   DVL    TGSGKT AF
Sbjct  117  IGSFEDLISRFSFDRRLLNNLIENGFTEPTPIQCECIPVALNNRDVLACGPTGSGKTLAF  176

Query  57   SIPVIQIVYETLKDQQEGKKGKTTIKTGASV  87
             IP++Q + +    Q  G KG     T    
Sbjct  177  LIPLVQQIIDD--KQTAGLKGLIISPTKELA  205


>sp|P45818|ROK1_YEAST ATP-dependent RNA helicase ROK1 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ROK1 
PE=1 SV=1
Length=564

 Score = 209 bits (532),  Expect = 8e-58, Method: Composition-based stats.
 Identities = 106/519 (20%), Positives = 186/519 (36%), Gaps = 80/519 (15%)

Query  192  IGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPP  251
            IG + D+      F K          +  ++          ++   +       +     
Sbjct  117  IGSFEDLISR-FSFDK---------RLLNNLIENGFTEPTPIQCECIPVALNNRD-----  161

Query  252  KDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKK  311
                +A      G  +        Q+   K      K LI+ P++ELA Q      +   
Sbjct  162  ---VLACGPTGSGKTLAFLIPLVQQIIDDKQT-AGLKGLIISPTKELANQIFIECFKLSY  217

Query  312  YIDNPKLRELLIIGGVAARDQLSVLENGV------DIVVGTPGRLDDLVSTGKLNLSQVR  365
             I   K R L +   + ++   + L+N V      DI++ TP RL D+V    L+LS+V+
Sbjct  218  KIFLEKKRPLQV--ALLSKSLGAKLKNKVVSDKKYDIIISTPLRLIDVVKNEALDLSKVK  275

Query  366  FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF  425
             L+ DEAD L  + + +  + + +           L+  + SAT+ S +V+++++ IM  
Sbjct  276  HLIFDEADKLFDKTFVEQSDDILSAC-----REPSLRKAMFSATIPS-NVEEIAQSIMMD  329

Query  426  PTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW  485
            P  V +  +++    +   ++    +  +L             +  +   + G   P   
Sbjct  330  PVRVIIGHKEAANTNIEQKLIFCGNEEGKL-------------IAIRQLVQEGEFKP---  373

Query  486  SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL  545
                                    IIF  +      L    +           + +   +
Sbjct  374  ----------------------PIIIFLESITRAKALYHELMYD---------RINVDVI  402

Query  546  HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR  605
            H +R   +R + +ERFK G++  LICTDV ARGID  GV  VIN  +P   Q YVHRIGR
Sbjct  403  HAERTALQRDRIIERFKTGELWCLICTDVLARGIDFKGVNLVINYDVPGSSQAYVHRIGR  462

Query  606  VGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEH  665
             GR  R G AI+    +       + +   +         D    +   E + +   + H
Sbjct  463  TGRGGRSGKAITFYTKQDSVAIKPIINVMKQSGCEVSEWMDKMAKMTRKEKESIKNGKAH  522

Query  666  LNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGH  704
                     P +         ++    KR       K H
Sbjct  523  KERKQITTVPKMDKAKRRRQQEMIAASKRRKNEELSKKH  561


 Score = 90.2 bits (222),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 29/91 (32%), Positives = 41/91 (45%), Gaps = 6/91 (7%)

Query  1    MAAFSEM----GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
            + +F ++         +   + E  +  PT IQ E IP+ L   DVL    TGSGKT AF
Sbjct  117  IGSFEDLISRFSFDKRLLNNLIENGFTEPTPIQCECIPVALNNRDVLACGPTGSGKTLAF  176

Query  57   SIPVIQIVYETLKDQQEGKKGKTTIKTGASV  87
             IP++Q + +    Q  G KG     T    
Sbjct  177  LIPLVQQIIDD--KQTAGLKGLIISPTKELA  205


>sp|Q0DWT8|RH1_ORYSJ DEAD-box ATP-dependent RNA helicase 1 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os02g0795900 PE=2 SV=1
Length=521

 Score = 208 bits (529),  Expect = 8e-58, Method: Composition-based stats.
 Identities = 89/435 (20%), Positives = 161/435 (37%), Gaps = 55/435 (13%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL--------  336
               +AL+V P+R+LA Q                L     +G  +  D++S L        
Sbjct  109  RCLRALVVLPTRDLALQVKEVFDAIA---PVVGLSVGSAVGQSSIADEVSNLIEKSKQGL  165

Query  337  -------------ENGVDIVVGTPGRLDDLVS-TGKLNLSQVRFLVLDEADGLLSQGYSD  382
                         +  VDI+V TPGRL D +S T   +L  +++LV+DE D +L + Y  
Sbjct  166  FPSLDEEYIQMEPQTKVDILVATPGRLMDHISMTKGFSLEHLQYLVVDETDRMLREAYQS  225

Query  383  FINRMHNQIPQVTSDGK----RLQVIVCS-ATLHSFDVKKLSEKIMHFPTWVDLKGEDSV  437
            ++  +         +        + ++    T+    V++   K   FP       +  +
Sbjct  226  WLPTVIQLTRSSDQNHSWSDMNGETLLHPLTTIRRSGVER-GFKGKSFPRL----AKIVL  280

Query  438  PDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYA  497
              T+            +L +   +  +  +    +        S ++  ++   LK    
Sbjct  281  SATLTQ-------DPSKLSQLELQHPLLLNSGKKRYRIPTKLQSYKLVCKSN--LKPLSL  331

Query  498  VRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE--RK  555
            +  ++E + ++ ++F  +      L          P K             R   E  R+
Sbjct  332  IVLLQELRGEKCLVFTSSVESSHRLSTLLEFFEDLPFKFSEY--------SRLQRESTRR  383

Query  556  QNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLA  615
            + L+ FK+G +  LI TD  ARGI I G+ YVIN  +P   + Y+HR GR  RA   G  
Sbjct  384  KTLDAFKEGKIDVLIGTDRMARGIHIDGLRYVINYDMPPYVKTYIHRAGRTARAGESGSC  443

Query  616  ISLVATEKEKVWYHVC-SSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVE  674
             + +   + K +  +   +    C    L E+   T+       L ++EE L    ++  
Sbjct  444  FTFLRKHEVKAFDKMLKKADNSSCSLHSLPEESVETLRPVFSSALKKLEESLESEATKKS  503

Query  675  PDIKVPVDEFDGKVT  689
                   +    K T
Sbjct  504  KSGDKAPNASKRKRT  518


 Score = 55.5 bits (132),  Expect = 1e-06, Method: Composition-based stats.
 Identities = 22/125 (18%), Positives = 45/125 (36%), Gaps = 21/125 (17%)

Query  1    MAAFSEMG------VMPEIAQAVEEMDWLLPTDIQAESI-----PLILGGGDVLMAAETG  49
            + +FS         + P + + ++ M       +Q  +      P      D+ + + TG
Sbjct  30   IDSFSGCPVAHLPRLDPRLVKPLQRMGIESFFPVQVAAWLETIGPGAFE-RDICINSPTG  88

Query  50   SGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGL  109
            SGKT A+++P++Q++          +K +              +   +   A A    GL
Sbjct  89   SGKTLAYALPIVQMLA--------TRKVRCLRALVVLPTRDLALQVKEVFDAIAP-VVGL  139

Query  110  CCQSR  114
               S 
Sbjct  140  SVGSA  144


>sp|P0CR08|SPB4_CRYNJ ATP-dependent rRNA helicase SPB4 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=SPB4 PE=3 SV=1
Length=748

 Score = 213 bits (541),  Expect = 9e-58, Method: Composition-based stats.
 Identities = 95/531 (18%), Positives = 183/531 (34%), Gaps = 97/531 (18%)

Query  262  PDGYIVKSQHSGNAQVTQTK--FLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLR  319
              G  +        ++++ +  +      A++V P+RELA Q       F   +  P+  
Sbjct  62   GSGKTLAFTIPVLERLSRREEPYKKGEIAAIVVAPTRELATQIHAVFHHFLSSLIPPESE  121

Query  320  --------------------------------ELLIIGGVAARDQLSVLENGVDIVVGTP  347
                                             +L+  G     + +       I++GTP
Sbjct  122  EETGDVEAHAPPFASSSRSPSPQTPDKPLFPLPMLVTSGTPTPYE-TFQSTHPSILIGTP  180

Query  348  GRLDDLVSTGK----LNLSQVRFLVLDEADGLLSQ-GYSDFINRMHNQIPQVTSDGKRLQ  402
            GRL   +   +    + +S++  LVLDEAD LLS   +   + R+   +P      K+ +
Sbjct  181  GRLAAFLLNPRGLAIVRVSELDVLVLDEADRLLSSPDHRRDVERIMRHLP------KQRR  234

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
              + SAT+    V+++    +  P  + +  +D   D          PK  R    L  +
Sbjct  235  THLFSATMTDA-VEEMIGLGLRNPVRIVVNLKDKRKDG-------EEPKERRTPMALQNT  286

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
            ++                  E   + I++L  E       +H+  + I++  T    D  
Sbjct  287  YLVC-------------RHAEKTLQLIRLLLCE-----STKHERSKFIVYFSTCAAVDYF  328

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR-----FLICTDVAAR  577
             +   +          +F     HG+  P  R+  L  F            L+CTDVAAR
Sbjct  329  YRILSRLPSL-----SKFHLTSFHGELPPKIRETALSTFTSHPSSHLSPAVLLCTDVAAR  383

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY-HVCSSRGK  636
            G+D   +  VI    P + + + HR GR  RA R G A+ L+   +E+ +     S+  +
Sbjct  384  GVDFLDIDVVIQYDAPTDPKTFSHRAGRTARAGRRGKAVVLLGKGREEDYVGTFQSANAE  443

Query  637  GCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPD--------------IKVPVD  682
                 R K       + N  ++    + ++N  + +V+                 ++ + 
Sbjct  444  LMKRKRQKAQRSILDFLNIRKIPLTKQPYINAYLEEVDTPQALDPEATTLLHSIRQIILT  503

Query  683  EFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKEAQTSFLHLGYLP  733
            + +      +   +   +Y  H         +     +      L L  +P
Sbjct  504  DRELSDKAAKSFVSAFRAYSKHEASFIFRTLDFDFNSQAISFGLLRLPAMP  554


 Score = 91.7 bits (226),  Expect = 8e-18, Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 6/102 (6%)

Query  3    AFSEMG--VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +++++   + P I   +  M +   T +QA +IP  +   D ++ A TGSGKT AF+IPV
Sbjct  14   SWAKLNPPLSPWILDVINSMGFKNMTPVQAGTIPRAVKNQDCVVEAVTGSGKTLAFTIPV  73

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            +    E L  ++E  K         +   +     +     F
Sbjct  74   L----ERLSRREEPYKKGEIAAIVVAPTRELATQIHAVFHHF  111


>sp|P0CR09|SPB4_CRYNB ATP-dependent rRNA helicase SPB4 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=SPB4 PE=3 SV=1
Length=748

 Score = 213 bits (541),  Expect = 9e-58, Method: Composition-based stats.
 Identities = 95/531 (18%), Positives = 183/531 (34%), Gaps = 97/531 (18%)

Query  262  PDGYIVKSQHSGNAQVTQTK--FLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLR  319
              G  +        ++++ +  +      A++V P+RELA Q       F   +  P+  
Sbjct  62   GSGKTLAFTIPVLERLSRREEPYKKGEIAAIVVAPTRELATQIHAVFHHFLSSLIPPESE  121

Query  320  --------------------------------ELLIIGGVAARDQLSVLENGVDIVVGTP  347
                                             +L+  G     + +       I++GTP
Sbjct  122  EETGDVEAHAPPFASSSRSPSPQTPDKPLFPLPMLVTSGTPTPYE-TFQSTHPSILIGTP  180

Query  348  GRLDDLVSTGK----LNLSQVRFLVLDEADGLLSQ-GYSDFINRMHNQIPQVTSDGKRLQ  402
            GRL   +   +    + +S++  LVLDEAD LLS   +   + R+   +P      K+ +
Sbjct  181  GRLAAFLLNPRGLAIVRVSELDVLVLDEADRLLSSPDHRRDVERIMRHLP------KQRR  234

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
              + SAT+    V+++    +  P  + +  +D   D          PK  R    L  +
Sbjct  235  THLFSATMTDA-VEEMIGLGLRNPVRIVVNLKDKRKDG-------EEPKERRTPMALQNT  286

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
            ++                  E   + I++L  E       +H+  + I++  T    D  
Sbjct  287  YLVC-------------RHAEKTLQLIRLLLCE-----STKHERSKFIVYFSTCAAVDYF  328

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR-----FLICTDVAAR  577
             +   +          +F     HG+  P  R+  L  F            L+CTDVAAR
Sbjct  329  YRILSRLPSL-----SKFHLTSFHGELPPKIRETALSTFTSHPSSHLSPAVLLCTDVAAR  383

Query  578  GIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWY-HVCSSRGK  636
            G+D   +  VI    P + + + HR GR  RA R G A+ L+   +E+ +     S+  +
Sbjct  384  GVDFLDIDVVIQYDAPTDPKTFSHRAGRTARAGRRGKAVVLLGKGREEDYVGTFQSANAE  443

Query  637  GCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPD--------------IKVPVD  682
                 R K       + N  ++    + ++N  + +V+                 ++ + 
Sbjct  444  LMKRKRQKAQRSILDFLNIRKIPLTKQPYINAYLEEVDTPQALDPEATTLLHSIRQIILT  503

Query  683  EFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKEAQTSFLHLGYLP  733
            + +      +   +   +Y  H         +     +      L L  +P
Sbjct  504  DRELSDKAAKSFVSAFRAYSKHEASFIFRTLDFDFNSQAISFGLLRLPAMP  554


 Score = 91.7 bits (226),  Expect = 8e-18, Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 6/102 (6%)

Query  3    AFSEMG--VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +++++   + P I   +  M +   T +QA +IP  +   D ++ A TGSGKT AF+IPV
Sbjct  14   SWAKLNPPLSPWILDVINSMGFKNMTPVQAGTIPRAVKNQDCVVEAVTGSGKTLAFTIPV  73

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            +    E L  ++E  K         +   +     +     F
Sbjct  74   L----ERLSRREEPYKKGEIAAIVVAPTRELATQIHAVFHHF  111


>sp|A7TFZ9|DBP6_VANPO ATP-dependent RNA helicase DBP6 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=DBP6 PE=3 SV=1
Length=637

 Score = 211 bits (536),  Expect = 9e-58, Method: Composition-based stats.
 Identities = 99/521 (19%), Positives = 197/521 (38%), Gaps = 68/521 (13%)

Query  198  IDKGHVKF-------SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFP  250
            ++   + +         + +D  +  ++  +++         +++  L+       F + 
Sbjct  160  LNTETIHYDSSMVRKFSDFEDQ-IDPKLLKNIQQNFSTDTFPIQSILLETLLPTLNFSYN  218

Query  251  PKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP-------NAPKALIVEPSRELAEQTL  303
                     +  D  +  S  SG         L        N  +AL++ P++ L  Q  
Sbjct  219  ITKKNFT-RRVGDVLVNASTGSGKTLAYSIPILQILSKRTVNKLRALVIVPTKLLINQVY  277

Query  304  NNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQ  363
                   +      +  +  +      +   +L+N  DI++ TPGRL D + +G +NL  
Sbjct  278  ETFNNLAQ--GTSLIVSISKLENSLKEENKKLLQNEPDILITTPGRLVDHLQSGAVNLRN  335

Query  364  VRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK--RLQVIVCSATLHSFDVKKLSEK  421
            ++FLVLDEAD LL+Q + ++ N + N++     D     +  +V SATL + + +KL   
Sbjct  336  LKFLVLDEADRLLNQSFQNWCNELLNKLKTDKQDHMPGNIVKMVFSATLTT-NTEKLHGL  394

Query  422  IMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANS  481
              + P                 + V  + K   L   L + ++                 
Sbjct  395  QFYNPK----------------LFVMDSVKLYHLPRMLQEYNLHIPTAKTSY--------  430

Query  482  PEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFS  541
                       K  + +R + E    + ++F ++     +L    +       K G QF 
Sbjct  431  -----------KPLFLLRLLSEINGSKMLVFVKSNES--SLRLASLLSIMIEHKLGSQFD  477

Query  542  CVCLHGDRKPHERKQNLERF----KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQ  597
               ++ +    E ++ +  F        V+ LI TDV +RG+DI+ +  V+N  +P   Q
Sbjct  478  INSVNSNNTKAENRRIVNEFASNNNTSKVQVLITTDVMSRGVDINDITDVLNYDVPISSQ  537

Query  598  NYVHRIGRVGRAERMGLAISLVATEKEKVWY--HVCSSRGKGCYNTRLKEDGGCTIWYNE  655
             Y+HR GR  RA+  G A +++  + E+ ++  H+ +   +     +  +  G     N+
Sbjct  538  QYIHRCGRTARAQSKGTAYNMLIGKGERTFWATHIDNDISRDIDGCQ-PQVWGQHDQQNQ  596

Query  656  MQLLSEIEE---HLNCTISQVEPDIKVPVDEFDGKVTYGQK  693
                 E E     L     + E   K  ++    KV   +K
Sbjct  597  KDEGQEEEAQVLPLLTVDPETESIYKECLNSLKEKVDTNRK  637


 Score = 49.7 bits (117),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 25/87 (29%), Positives = 45/87 (52%), Gaps = 22/87 (25%)

Query  1    MAAFSEM--GVMPEIAQAVEEMDWLLPT-DIQA---ESIPLILG--------------GG  40
            +  FS+    + P++ + +++ ++   T  IQ+   E++   L               G 
Sbjct  172  VRKFSDFEDQIDPKLLKNIQQ-NFSTDTFPIQSILLETLLPTLNFSYNITKKNFTRRVG-  229

Query  41   DVLMAAETGSGKTGAFSIPVIQIVYET  67
            DVL+ A TGSGKT A+SIP++QI+ + 
Sbjct  230  DVLVNASTGSGKTLAYSIPILQILSKR  256


>sp|A5DEZ5|MS116_PICGU ATP-dependent RNA helicase MSS116, mitochondrial 
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 
566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 
GN=MSS116 PE=3 SV=2
Length=714

 Score = 212 bits (539),  Expect = 1e-57, Method: Composition-based stats.
 Identities = 84/462 (18%), Positives = 159/462 (34%), Gaps = 73/462 (16%)

Query  240  FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQ-------VTQTKFLPNAPK----  288
            +N   +      +   + +     G +V+++             +      P   +    
Sbjct  90   YNSKMKNMTVVQQRAIMPMMDTKTGVVVRAKTGTGKTLAFALPCIQAALENPQQTQKGRI  149

Query  289  -ALIVEPSRELAEQTLNNIKQFKKYIDNPKLR---ELLIIGGVAARDQLSVLENGVDIVV  344
             AL+V P+R+LA Q     K+  ++      R     ++IGG   R      +    IV+
Sbjct  150  QALVVAPTRDLALQIEAEFKKVLQHQTRNVHRKTDTFVLIGG---RKNDLHPKAKAAIVI  206

Query  345  GTPGRLDDLVSTGKL--NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTS----DG  398
             TPGRL+ ++   ++    S +++ V DEAD LL QG++  +  +  ++    +      
Sbjct  207  ATPGRLEAILRDPRMLPMFSDLKYRVYDEADRLLDQGFAPTLEVIEERLRDAKAEALEPD  266

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED--SVPDTVHHVVVPVNPKTDRLW  456
               +  + SAT+         E I     +++   +D     + +H  +V      D   
Sbjct  267  NHFKTALFSATVDDAVTNFAHETIGKEYEYINCVDKDAEESHENIHQGIVRTQSIKDSFE  326

Query  457  ERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTK  516
                      +D                                    K  +AI+F  T 
Sbjct  327  ASFSYILNHIND------------------------------------KYFKAIVFLPTI  350

Query  517  IDCDNLEQYFIQQ------GGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLI  570
               +   +   +             K +    + LHG      R + ++ F++     L+
Sbjct  351  TGTEYYYRVLQRAKREELYDSETATKKYGSRILRLHGKMSQSARDRTVKEFRRTSHGVLV  410

Query  571  CTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
            CTDVAARG+D + V +VI +       +Y+H+IGR  RA   G A   ++  + K    +
Sbjct  411  CTDVAARGLDFNDVSHVIQMCPSSSVADYIHKIGRTARAGARGKARIFISEPEMKFIETL  470

Query  631  CSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQ  672
               RG        KED               +  +    + +
Sbjct  471  QRERGIVF-----KEDTEYVKDETSPDHFQRLGSYEQDALEE  507


 Score = 68.2 bits (165),  Expect = 2e-10, Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 39/103 (38%), Gaps = 9/103 (9%)

Query  4    FSEM----GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGD-VLMAAETGSGKTGAFSI  58
            F+ +         I + +        T +Q  +I  ++     V++ A+TG+GKT AF++
Sbjct  72   FTSLEASRKFDKSIFRGLYNSKMKNMTVVQQRAIMPMMDTKTGVVVRAKTGTGKTLAFAL  131

Query  59   PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSA  101
            P IQ   E  +  Q+G+          +      +        
Sbjct  132  PCIQAALENPQQTQKGR----IQALVVAPTRDLALQIEAEFKK  170


>sp|Q751D1|DBP6_EREGS ATP-dependent RNA helicase DBP6 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DBP6 PE=3 SV=1
Length=607

 Score = 209 bits (533),  Expect = 1e-57, Method: Composition-based stats.
 Identities = 71/351 (20%), Positives = 142/351 (40%), Gaps = 45/351 (13%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIV  343
            N  +A+I+ P++ L  Q  + ++   K      +   +     + +++ + L+    D++
Sbjct  245  NKLRAVILVPTKLLVHQVYDTVQALAK---GSSVVVAVSKMDTSLKEESAKLKAQEPDVL  301

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            + TPGRL D ++    +L  ++FLVLDEAD LL+Q + ++   +  ++           V
Sbjct  302  IITPGRLVDHLNMQTFSLKNLKFLVLDEADRLLNQSFQNWCIELMTRLNAERPFKGPGNV  361

Query  404  --IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK  461
              ++ SATL + + ++L +  +H P    +              +P   +   L     K
Sbjct  362  IKMIFSATLTT-NTERLHDLQLHNPKLFLMGS--------QLYHMPAQLQEYNLPIPTSK  412

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
            S+ +   +          +                           + ++F ++      
Sbjct  413  SYAKPLILLRLLPLLSTESL--------------------------RILVFVKSNEASIR  446

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF---KKGDVRFLICTDVAARG  578
            L        G         +   ++ +      ++ +E F     G    L+ TD+ +RG
Sbjct  447  LAALLTAMVGNGLSAVST-TVGSINNNNSKATNRKLIEAFAAGASGHCSILVSTDLMSRG  505

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            +DI G+ +VIN  LP   Q YVHR GR  RA   G A++L+  + E+ ++ 
Sbjct  506  LDISGISHVINYDLPISSQQYVHRCGRTARANTSGTAVNLLVGKGEQNFWK  556


 Score = 36.6 bits (83),  Expect = 1.0, Method: Composition-based stats.
 Identities = 20/67 (30%), Positives = 32/67 (48%), Gaps = 10/67 (15%)

Query  41   DVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQM-NPYDRG  99
            D+L+ A TGSGKT A+++ +I I+          ++    ++    V  K  +   YD  
Sbjct  216  DILVNASTGSGKTLAYAMLLIHIL---------SRRTVNKLRAVILVPTKLLVHQVYDTV  266

Query  100  SAFAIGS  106
             A A GS
Sbjct  267  QALAKGS  273


>sp|Q9CWT6|DDX28_MOUSE Probable ATP-dependent RNA helicase DDX28 
OS=Mus musculus OX=10090 GN=Ddx28 PE=2 SV=2
Length=540

 Score = 208 bits (529),  Expect = 1e-57, Method: Composition-based stats.
 Identities = 86/410 (21%), Positives = 142/410 (35%), Gaps = 69/410 (17%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN-------------APKALIVE  293
                       L +           SG                         AP+ L++ 
Sbjct  151  PTSVQSKTIPPLLRGRHLLCAAETGSGKTLSYLLPLFQRLLRGSDLDSRSFTAPRGLVLV  210

Query  294  PSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGV--DIVVGTPGRLD  351
            PSRELAEQ     +    Y+    L+ + + GG+        L      D++V TPG L 
Sbjct  211  PSRELAEQVQAVAQSLGGYLG---LQVIELGGGLGMSRLKLQLYRRPAADVLVATPGALW  267

Query  352  DLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD-------GKRLQVI  404
              + +  ++L  + F+VLDE D LL + + + ++ +  + P   S          + Q++
Sbjct  268  KALKSQLISLQHLNFIVLDEVDTLLDESFLELVDYILEKSPIAESPAELEDPFNPKAQLV  327

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            +  AT                             + ++ ++  V            K H 
Sbjct  328  LVGATFP---------------------------EGLNQLLSKVTSPDSLTTITSSKLHC  360

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                V     T       +  +E ++ILK +   +A K       ++FC +    + L  
Sbjct  361  LMPHVR---QTFMRLKGADKVTELVQILKQQD--KASKTEPSGTVLVFCNSASTVNWLGY  415

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
                         H+   + L G      R    + F+KG    L+CTD+A+RG+D   V
Sbjct  416  IL---------DDHKIQHLRLQGQMPASMRAGIFQSFQKGSQNILVCTDIASRGLDSVHV  466

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERM--GLAISLVA-TEKEKVWYHVC  631
              VIN   P   Q+Y+HR GRVGR      G  IS V       +   + 
Sbjct  467  EVVINYDFPPTLQDYIHRAGRVGRVGSEVPGSVISFVTHPWDVSLVQKIE  516


 Score = 79.8 bits (195),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 44/66 (67%), Gaps = 2/66 (3%)

Query  3    AFSEMGVMPEIAQAVEEM--DWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +F ++G+ P +  A++E   + + PT +Q+++IP +L G  +L AAETGSGKT ++ +P+
Sbjct  127  SFVDLGLEPRVLLALQEAVPEVVQPTSVQSKTIPPLLRGRHLLCAAETGSGKTLSYLLPL  186

Query  61   IQIVYE  66
             Q +  
Sbjct  187  FQRLLR  192


>sp|A1C7F7|DBP9_ASPCL ATP-dependent RNA helicase dbp9 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp9 PE=3 SV=1
Length=621

 Score = 209 bits (533),  Expect = 2e-57, Method: Composition-based stats.
 Identities = 112/565 (20%), Positives = 197/565 (35%), Gaps = 69/565 (12%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             ++L L   +   +  +       +++  +                 +A +K   G    
Sbjct  29   FENLNLDPRLRQALIKEQFTKPTPVQSKAIPLAL--------EGKDILARAKTGSGKTAA  80

Query  269  SQHSGNAQVTQTKFLPN---APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
                    + Q K       A   LI+ P+RELAEQ  + I +F  +     +R + +  
Sbjct  81   YVLPILQTILQKKAADPSLKATTGLILVPTRELAEQVQSVITKFTAFC-GKDVRSVNLTQ  139

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
             V+   Q ++L +  D++V TP R+   + +  L L  +  LV+DEAD +LS GY + IN
Sbjct  140  KVSDAVQRTMLADYPDLIVSTPARVIANLGSSALALDNLTHLVIDEADLVLSYGYDEDIN  199

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
             +   IP      + +Q  + SATL S +V  L       P  + L+ ++     +   V
Sbjct  200  ALAKAIP------RGVQTFLMSATLTS-EVDTLKGLFCRNPVVLKLEDKEDEGAGISQFV  252

Query  446  VPVNPKTDRLWERLGKSHIRTD-----DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRA  500
            V        L   +              V   D         E +     +L  E  + +
Sbjct  253  VRCAEDEKFLLTYVIFKLQLIKGKVIIFVGDIDRCYRVKLFLEQFGIKSCVLNSELPINS  312

Query  501  IKEHKMD------QAII-------------FCRTKIDCDNLEQYFIQQGGGPDKKGHQFS  541
                  +        II             F ++K   D  E+    + G  + + ++  
Sbjct  313  RIHVVQEFNKGVYDIIIAADEQEVMGARTTFKKSKEITDGDEEETRDKMGSSEDEDNEPE  372

Query  542  CVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH  601
                        RK +     KG    +      +RGID   V  V+N  LP   ++Y H
Sbjct  373  DNDKKSAHPEKRRKTS----GKGKDYGI------SRGIDFQNVACVLNFDLPTTSKSYTH  422

Query  602  RIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE  661
            RIGR GRA + G+A+S V    E         +       +  E     I   + +L  E
Sbjct  423  RIGRTGRAGKAGMALSFVVPADE-----FGKHKPTSFPTAKYDESVLAKIVKRQAKLDHE  477

Query  662  IEEHLNCTISQVEPDIKVPVDEFD---------GKVTYGQKRAAGGGSYKGHVDILAPTV  712
            ++   +  + QV+       D             +    ++        K H +     +
Sbjct  478  VKP-YHFEMKQVDAFRYRMTDALRSVTRLAIQEARAREIRQELVKSEKLKRHFEENPEEL  536

Query  713  QELA-ALEKEAQTSFLHLGYLPNQL  736
            ++L    E  A     HL ++P+ L
Sbjct  537  KQLRHDGELRAARIQPHLKHIPDYL  561


 Score = 103 bits (256),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 47/103 (46%), Gaps = 3/103 (3%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F  + + P + QA+ +  +  PT +Q+++IPL L G D+L  A+TGSGKT A+ +P++
Sbjct  27   TDFENLNLDPRLRQALIKEQFTKPTPVQSKAIPLALEGKDILARAKTGSGKTAAYVLPIL  86

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            Q + +        K    T         +         + F  
Sbjct  87   QTILQKKAADPSLK---ATTGLILVPTRELAEQVQSVITKFTA  126


>sp|Q6FN65|ROK1_CANGA ATP-dependent RNA helicase ROK1 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=ROK1 PE=3 SV=1
Length=565

 Score = 208 bits (529),  Expect = 2e-57, Method: Composition-based stats.
 Identities = 108/523 (21%), Positives = 191/523 (37%), Gaps = 84/523 (16%)

Query  182  YGEEFTMHDT---IGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAEL  238
            Y    T  D    IG + D+               L   +  ++          ++   +
Sbjct  106  YKGNITGEDIPLPIGSFEDLISR----------FSLDKRLLNNLIENHFTEPTPIQCEAI  155

Query  239  KFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSREL  298
                             +A +    G  +        Q+ + K   +  K LI+ P++EL
Sbjct  156  PLCLN--------GRDLLACAPTGSGKTLAFLIPLLQQIIEEKNF-SGVKGLIISPTKEL  206

Query  299  AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGV------DIVVGTPGRLDD  352
            A Q  N   +  K I   K R L +   + ++   + L N V      D+++ TP RL D
Sbjct  207  ATQIFNECVKLSKRIYLDKKRPLQV--AILSKSLGAKLRNKVISDKKYDLIISTPLRLID  264

Query  353  LVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHS  412
            +V    L+LS V+ L+ DEAD L  + + +  + + N     +         + SAT+ S
Sbjct  265  VVKNEALDLSNVKHLIFDEADKLFDKTFIEQTDDILNSCTDPSMRKS-----MFSATIPS  319

Query  413  FDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAK  472
              V++ +  IM+ P  V +  +++    +   ++    +  +L             +  +
Sbjct  320  -SVEETANSIMNDPVRVIIGHKEAANTNIEQKLIFCGNEEGKL-------------IAIR  365

Query  473  DNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGG  532
               + G   P                           IIF  +      L    +     
Sbjct  366  QLVQQGEFKP-------------------------PIIIFLESIARAKALYHELMYD---  397

Query  533  PDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTL  592
                  + +   +H +R   +R++ +ERFK G++  LICTDV ARGID  GV  VIN  +
Sbjct  398  ------RINVDVIHAERTAIQREKIIERFKTGELWCLICTDVLARGIDFKGVNLVINYDV  451

Query  593  PDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIW  652
            P   Q YVHRIGR GR  R G A++L           + +   +         +    I 
Sbjct  452  PTTAQAYVHRIGRTGRGGRSGKAVTLYTKLDSVAIKPIINVMKQSGCEVEGWMNNISKIT  511

Query  653  YNEMQLLSEIEEHLN-CTISQVEPDIKVPVDEFDGKVTYGQKR  694
              E + + + + H     IS V    ++   +    +   ++R
Sbjct  512  KREKEAIKKGKSHKERDQISTVPKVERLKRKKKQDMIRASKRR  554


 Score = 97.1 bits (240),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 46/110 (42%), Gaps = 11/110 (10%)

Query  1    MAAFSEM----GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
            + +F ++     +   +   + E  +  PT IQ E+IPL L G D+L  A TGSGKT AF
Sbjct  119  IGSFEDLISRFSLDKRLLNNLIENHFTEPTPIQCEAIPLCLNGRDLLACAPTGSGKTLAF  178

Query  57   SIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
             IP++Q + E        K          S   +     ++     +   
Sbjct  179  LIPLLQQIIE-------EKNFSGVKGLIISPTKELATQIFNECVKLSKRI  221


>sp|Q6CSW1|ROK1_KLULA ATP-dependent RNA helicase ROK1 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=ROK1 PE=3 SV=1
Length=579

 Score = 208 bits (530),  Expect = 2e-57, Method: Composition-based stats.
 Identities = 104/508 (20%), Positives = 186/508 (37%), Gaps = 77/508 (15%)

Query  192  IGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPP  251
            IG + D+     +F K          +  ++          +++  +     E +     
Sbjct  128  IGSFEDLITR-FQFDK---------RLLNNLIENNFTEPTPIQSESIPILLHERD-----  172

Query  252  KDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKK  311
                +A +    G  +        Q+   K      K LI+ P++ELA Q      +   
Sbjct  173  ---MIACAPTGSGKTLAFLIPLLQQIINDKTTV-GLKGLIISPTKELANQIFIECSKLAN  228

Query  312  YIDNPKLRELLIIGGVAARDQLSVL----ENGVDIVVGTPGRLDDLVSTGKLNLSQVRFL  367
             I   K R L +     +           E+  DI++ TP RL  +V    LNL +V+ L
Sbjct  229  KIYLDKKRPLQVALLSKSLSSKLKNKVISEDKYDIIISTPLRLITVVQEEALNLGKVKHL  288

Query  368  VLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPT  427
            + DEAD L  + + +  + + +     +     L+  + SAT+ S +V+++++ IM+ P 
Sbjct  289  IFDEADKLFDKTFVEQTDDILS-----SCTDPHLRKTMFSATIPS-NVEEIAQTIMNDPI  342

Query  428  WVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSE  487
             V +  +++    +   +V    +  +L                                
Sbjct  343  RVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQL--------------------------  376

Query  488  AIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHG  547
                         ++       IIF  +      L    +           + +   +H 
Sbjct  377  ------------VLEGEFKPPVIIFLESITRAKALFHELLYD---------KLNVDVIHA  415

Query  548  DRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVG  607
            +R   +R + +ERFK GD+  LICTDV ARG+D  GV  VIN  +P   Q YVHRIGR G
Sbjct  416  ERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHRIGRTG  475

Query  608  RAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLN  667
            R  R G AI+    +       + +   +             ++   E + L + + H+ 
Sbjct  476  RGGRSGKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQKISSMSKREKESLKKGKGHVE  535

Query  668  -CTISQVEPDIKVPVDEFDGKVTYGQKR  694
               IS V   +K    +    +   +KR
Sbjct  536  RKQISTVPKVVKQKKRQRREMIEASKKR  563


 Score = 88.3 bits (217),  Expect = 8e-17, Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 48/107 (45%), Gaps = 11/107 (10%)

Query  1    MAAFSEM----GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAF  56
            + +F ++         +   + E ++  PT IQ+ESIP++L   D++  A TGSGKT AF
Sbjct  128  IGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAF  187

Query  57   SIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
             IP++Q +         G KG        S   +     +   S  A
Sbjct  188  LIPLLQQIIND--KTTVGLKG-----LIISPTKELANQIFIECSKLA  227


>sp|Q2UBZ5|SPB4_ASPOR ATP-dependent rRNA helicase spb4 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=spb4 
PE=3 SV=1
Length=638

 Score = 208 bits (530),  Expect = 5e-57, Method: Composition-based stats.
 Identities = 90/402 (22%), Positives = 160/402 (40%), Gaps = 73/402 (18%)

Query  262  PDGYIVKSQHSGNAQVTQTK--FLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNP---  316
              G  +        ++ + +     +   A+I+ P+RELA Q  + +     +       
Sbjct  61   GSGKTLSFLIPIVEKLLRLEEPIKKHHVGAIIISPTRELASQIYHVLLSLLAFHPPSASV  120

Query  317  -------------------KLRELLIIGG--VAARDQLSVLENGVDIVVGTPGRLDDLVS  355
                               K+   L++GG    A D    L+   +++V TPGRL +L+S
Sbjct  121  INPSEDDDVPRQKFPSSTLKVVPQLLLGGSTTPAEDLSKFLKQSPNLLVSTPGRLLELLS  180

Query  356  TGKLNL--SQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSF  413
            +  ++   S    LVLDEAD LL  G+ + +  +  ++P      K+ +  + SA++ S 
Sbjct  181  SPHVHCPQSSFEMLVLDEADRLLDLGFKETLQNIIRRLP------KQRRTGLFSASI-SE  233

Query  414  DVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKD  473
             V ++    +  P  V +K + +              +  R    L  +++ T  +H  D
Sbjct  234  AVDQIVRVGLRNPVKVMVKVKGT-----------SGAQDKRTPASLQMTYLTTPTIHKFD  282

Query  474  NTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGP  533
              +   +S +   +                    + I F  T    D L          P
Sbjct  283  ALKHILHSVDPTPQ--------------------KTIFFASTCSGVDYLSAIL------P  316

Query  534  DKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR-FLICTDVAARGIDIHGVPYVINVTL  592
               G  F  + LHG    + R++N  RF        L+ TDVA+RG+DI  V  V+ +  
Sbjct  317  LILGDDFQLISLHGKHPANVREKNFNRFVNSYSPAILLTTDVASRGLDIPSVDLVVQIDP  376

Query  593  PDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            P + + ++HR GR GRA R GL++ L+   +E+ +      R
Sbjct  377  PSDPKTFIHRCGRAGRAGRRGLSVVLLHPGREEDYVSFLEVR  418


 Score = 92.5 bits (228),  Expect = 4e-18, Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 41/88 (47%), Gaps = 4/88 (5%)

Query  9    VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETL  68
            +   + +AV  M +   T +QA +IPL +   DV++ A TGSGKT +F IP+++ +    
Sbjct  21   LSEWVLEAVSSMGFTRMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLIPIVEKLLRL-  79

Query  69   KDQQEGKKGKTTIKTGASVLNKWQMNPY  96
               +E  K         S   +     Y
Sbjct  80   ---EEPIKKHHVGAIIISPTRELASQIY  104


>sp|A6R2L6|DBP9_AJECN ATP-dependent RNA helicase DBP9 OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=DBP9 PE=3 
SV=1
Length=625

 Score = 208 bits (529),  Expect = 6e-57, Method: Composition-based stats.
 Identities = 112/571 (20%), Positives = 197/571 (35%), Gaps = 73/571 (13%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDG----  264
             + L L   +   +  Q       ++   +              DG   L++A  G    
Sbjct  26   FETLKLDPRLLQALTQQKFTKPTPIQAEAIPLAL----------DGKDVLARAKTGSGKT  75

Query  265  --YIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
              Y++    S   Q  +      +  ALI+ P+RELAEQ       F  +     +R + 
Sbjct  76   AAYLLPVLQSILQQ-KRNTPAHKSISALILVPTRELAEQVHRTAISFSAF-SGKHVRSVN  133

Query  323  IIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD  382
            +   V+   Q S+L +  DIVV TP R    V++  L+L ++  LV+DEAD +LS GY +
Sbjct  134  LTQKVSDAVQRSLLADLPDIVVSTPARAVANVNSSALSLERLTHLVIDEADLVLSYGYEE  193

Query  383  FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH  442
             +  +   +P      + +Q  + SAT  S +V  L       P  + L+ ++     + 
Sbjct  194  DMQSLAKAVP------RGVQTFLMSATFTS-EVDTLKGLFCRNPVVLKLEEKEDEGAGIS  246

Query  443  HVVVPVNPKTDRLWERLGKSHIRTDD------VHAKDNTRPGANSPEMWSEAIKILKGEY  496
              VV    + ++         ++         V   D         E +     +L  E 
Sbjct  247  QFVVRRCAEDEKFLLTYVIFKLQLVKGKCIIFVGDVDRCYRLKLFLEQFGIRSCVLNSEL  306

Query  497  AVRAIKE--HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
             V +      + ++ +      +D   +     +      +K  Q S    + D     R
Sbjct  307  PVNSRIHVVQEFNKGVYDIIIAVDDQEVLGELRKNSKKQPRKSDQCSRDSEY-DGAQTSR  365

Query  555  KQNL----------------ERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQN  598
              +                 +  K+ D          +RGID   V  V+N  LP   ++
Sbjct  366  NNDQYSSEDDAETQPSKRPKKSAKEKDYGI-------SRGIDFQNVACVLNFDLPTTSKS  418

Query  599  YVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
            Y HRIGR GRA + G+A+S V    +   +   S            ++   +        
Sbjct  419  YTHRIGRTGRAGKTGMALSFVIPSDQFGKHKPTSIPSAK------HDEAMLSKIIKRQDK  472

Query  659  LSEIEEHLNCTISQVEPDIKVPVDEFDG----KVTYGQKR-----AAGGGSYKGHVDILA  709
            L    +  +  + QV+       D         V   + R            K H +   
Sbjct  473  LGREVKPYHFDMKQVDAFRYRMSDALRAVTRVAVQEARAREIRQELVKSEKLKRHFEENP  532

Query  710  PTVQELA-ALEKEAQTSFLHLGYLPNQLFRT  739
              +++L    E  A     HL ++P+ L  T
Sbjct  533  EELRQLRHDGELRAARVQAHLKHVPDYLMPT  563


 Score = 107 bits (268),  Expect = 6e-23, Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 52/102 (51%), Gaps = 3/102 (3%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F  + + P + QA+ +  +  PT IQAE+IPL L G DVL  A+TGSGKT A+ +PV+Q
Sbjct  25   SFETLKLDPRLLQALTQQKFTKPTPIQAEAIPLALDGKDVLARAKTGSGKTAAYLLPVLQ  84

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
             + +  ++    K   +          +     +    +F+ 
Sbjct  85   SILQQKRNTPAHK---SISALILVPTRELAEQVHRTAISFSA  123


>sp|A5E726|DBP6_LODEL ATP-dependent RNA helicase DBP6 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP6 PE=3 SV=1
Length=663

 Score = 209 bits (531),  Expect = 7e-57, Method: Composition-based stats.
 Identities = 87/408 (21%), Positives = 170/408 (42%), Gaps = 45/408 (11%)

Query  276  QVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
            +  + + +P   +A+++ P++ L  Q    + Q         L  + +   ++ R++   
Sbjct  293  ESLKDRVVPRV-RAIVLVPTKPLINQVRATMLQLA---LGTNLNIVSLKNDISIREESER  348

Query  336  L-ENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQI---  391
            L E   D+V+ TPGRL + ++   ++LS +R+LV+DEAD LL+Q + ++   + ++I   
Sbjct  349  LIELVPDVVISTPGRLVEHLAMDSISLSSLRYLVVDEADRLLNQSFQNWSQILISKIHLQ  408

Query  392  ---PQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
                       ++Q  + SATL + D  KL+    H P  + +     + + +    VP 
Sbjct  409  QVYDVANVWSLKVQKFIFSATLTT-DAGKLASLDFHNPRLLIVNDSQRLVNEL--FSVPA  465

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
                 +L   + KS ++   +                               I + K+  
Sbjct  466  MLSEYKLNFGVAKSSLKPLILAK---------------------------FLIAQEKLSD  498

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGP-DKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
             ++F ++      L             ++  +   + L  +R    R + L+ F    + 
Sbjct  499  VLVFTKSNESSIRLCTLLQAIFDRICLQEKVKVGFMNLTNNRT-SLRSKILKDFTSQKIN  557

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             L+ TD+ ARG+D+  +  V+N  L +  + YVHR+GR  RA + G A +LV  + E+ W
Sbjct  558  ILVATDLIARGLDVTSIKDVVNYDLLNSSREYVHRVGRTARANQAGNAYNLVFGKGEEKW  617

Query  628  YHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEP  675
            +   SS      + +  E     +  +E + L +  E L     QV  
Sbjct  618  FKTISSEVSRNNDVKDVEVNLKQLISDEDEKLYQ--EALQSLQDQVRK  663


 Score = 62.5 bits (150),  Expect = 9e-09, Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 15/79 (19%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQ----AESIPLILGGG-------DVLMAAETGSGK  52
            FSE  + P + + +E + +     +Q    ++ +P I           DVL+ A TGSGK
Sbjct  224  FSEFPLSPFMHENLESLGFENAFAVQVGVLSKLLPEIQANKLRPDAFGDVLVNASTGSGK  283

Query  53   TGAFSIPVIQIVYETLKDQ  71
            T A+SIP+I    E+LKD+
Sbjct  284  TLAYSIPII----ESLKDR  298


>sp|Q6FUA6|DBP9_CANGA ATP-dependent RNA helicase DBP9 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP9 PE=3 SV=1
Length=595

 Score = 206 bits (525),  Expect = 1e-56, Method: Composition-based stats.
 Identities = 98/547 (18%), Positives = 190/547 (35%), Gaps = 51/547 (9%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
            S N +   L   +   +K        ++++  +     E+              K     
Sbjct  13   SVNFESFKLDARLLQAIKGSGFTHPTLIQSHAIPLALEEKR--DIIAKAATGSGKTLAYL  70

Query  266  IVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
            I   Q   + + ++T         +I+ P+REL +Q    +++   Y     ++ L +  
Sbjct  71   IPVIQTILDYKKSRTNGDEPGTLGIIMVPTRELTQQVTAVLEKLIHYCS-KDIKVLNLAA  129

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGK--LNLSQVRFLVLDEADGLLSQGYSDF  383
             ++     ++L    +I+VGTP ++ +++      + +  ++FLV+DE D +L+ GY D 
Sbjct  130  DLSTSVLNTLLSENPEIIVGTPSKILNILERNTDTVGIDDLKFLVIDEVDLVLTFGYQDD  189

Query  384  INRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDT---  440
            ++++   +P      K LQ  + SATL S D++ L +K    P  +    ++   D    
Sbjct  190  LDKIAEYLP----LKKNLQTFLMSATL-SDDIQSLKQKYCRSPAIIKFNDDEINKDKTKL  244

Query  441  VHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRA  500
            V + V             + K  +         N        ++  E   I         
Sbjct  245  VQYYVRVGEFDKFLFCYVIFKLGLIKGKTLVFVNNIDRGYRLKLVLEQFGIKSCILNNEL  304

Query  501  IKEHKMDQAIIFCRT-------KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
                +      F +          D DN++++  +Q      +        +  +   + 
Sbjct  305  PANSRQHIVDQFNKNVYHLLIATDDADNIKEFDDEQKDDIQVEEKNDETNTVVAEESTNS  364

Query  554  RKQNLERFKKG---DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAE  610
                  + K     D  + +     +RG+D   V  V+N  LP   + YVHR+GR  RA 
Sbjct  365  TTGIKSKTKNNYKQDKEYGV-----SRGVDFKNVACVVNFDLPTTAKAYVHRVGRTARAG  419

Query  611  RMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTI  670
            + G AIS V              +     + +  E     I   + +L  EI+ +     
Sbjct  420  KSGTAISFVVP-----LKEFGKHKPSMLPSAKKDEKILSRIIKQQSKLGLEIQPY-----  469

Query  671  SQVEPDIKVPVDEFDGKVTYG-QKRAAGGGSYKGHVDILAPTVQELAALEKEAQTSFLHL  729
                         FD K   G + R   G      V +    ++EL      ++    H 
Sbjct  470  ------------SFDLKQVEGFRYRMEDGFRAVTQVAVREARIKELKEELLASEKLKRHF  517

Query  730  GYLPNQL  736
               P +L
Sbjct  518  EENPIEL  524


 Score = 97.5 bits (241),  Expect = 9e-20, Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 2/100 (2%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILG-GGDVLMAAETGSGKTGAFSIPVIQ  62
            F    +   + QA++   +  PT IQ+ +IPL L    D++  A TGSGKT A+ IPVIQ
Sbjct  16   FESFKLDARLLQAIKGSGFTHPTLIQSHAIPLALEEKRDIIAKAATGSGKTLAYLIPVIQ  75

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
             + +  K +  G +   T+        +            
Sbjct  76   TILDYKKSRTNGDE-PGTLGIIMVPTRELTQQVTAVLEKL  114


>sp|Q4IJ56|DBP9_GIBZE ATP-dependent RNA helicase DBP9 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=DBP9 PE=3 SV=1
Length=615

 Score = 207 bits (527),  Expect = 1e-56, Method: Composition-based stats.
 Identities = 101/483 (21%), Positives = 180/483 (37%), Gaps = 34/483 (7%)

Query  200  KGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALS  259
            +    F     DLGL   +   +  Q      +++   +      ++         +A +
Sbjct  37   EEETSF----VDLGLDPRLLQAIAQQKFAKPTLVQRKAIPLALNGQD--------VLAKA  84

Query  260  KAPDGYIVKSQHSGNAQVTQTKFLPNA--PKALIVEPSRELAEQTLNNIKQFKKYIDNPK  317
                G          + + + K   +     ALI+ P+RELA+Q    I+QF  +     
Sbjct  85   DCGSGKTAAYVLPLLSSILKRKATDSTAFTTALILVPTRELADQVSKAIEQFASFCA-KD  143

Query  318  LRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLS  377
            +    +   V+++ Q ++L N  DIV+ TP      V++  L++ ++  L+LDEAD +LS
Sbjct  144  ISTAKLTDKVSSKVQRALLSNSPDIVISTPSTAWQNVNSSALSIDKLTHLILDEADLVLS  203

Query  378  QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSV  437
             GYS+ +  +   +P      K +QV++ SATL S +V  L       PT +DLK +++ 
Sbjct  204  YGYSEDLENLSRSVP------KGVQVMMMSATL-SDEVDTLKGIFRRDPTLLDLKEKEAE  256

Query  438  PDTVHHVVVPVNPKTDRLWER-LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEY  496
             + +   V         L    + K  +         +        +++ E   I     
Sbjct  257  GEGITQFVAKCGEDEKFLLAYVIFKLKLIKGKCIIFVSDIDRCYRLKLFFEQFGIRSCIL  316

Query  497  AVRAIKEHKMDQAIIFCRTKID----CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPH  552
                    ++     F R   D     D   +         +    Q      +      
Sbjct  317  NSELPLNSRVHVVEEFNRHVYDIIIAADEKNEMLGDDEEPAETAEAQDDAKKSNEG-DDA  375

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM  612
            E +    + K    +        +RG+D   V  VIN  LP     Y HRIGR  RA + 
Sbjct  376  ETEAKRPKKKAKKSKGGDKEYGVSRGVDFKKVSAVINFDLPTTASAYTHRIGRTARAGQT  435

Query  613  GLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQ  672
            G+A+S V  +   ++     +    C N    E     I   + +   E++   N  + Q
Sbjct  436  GMALSFVVPKD--LYRKHMPTSTPACEN---DEKIMARIIRQQAKRDKEVKP-YNFNMKQ  489

Query  673  VEP  675
            V+P
Sbjct  490  VDP  492


 Score = 96.7 bits (239),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 46/103 (45%), Gaps = 4/103 (4%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +F ++G+ P + QA+ +  +  PT +Q ++IPL L G DVL  A+ GSGKT A+ +P++
Sbjct  40   TSFVDLGLDPRLLQAIAQQKFAKPTLVQRKAIPLALNGQDVLAKADCGSGKTAAYVLPLL  99

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
              + +             T         +           FA 
Sbjct  100  SSILKRKATDSTA----FTTALILVPTRELADQVSKAIEQFAS  138


>sp|Q54TD7|DDX24_DICDI ATP-dependent RNA helicase ddx24 OS=Dictyostelium 
discoideum OX=44689 GN=ddx24 PE=3 SV=1
Length=940

 Score = 211 bits (537),  Expect = 2e-56, Method: Composition-based stats.
 Identities = 101/456 (22%), Positives = 186/456 (41%), Gaps = 72/456 (16%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
             +L++ P+RELA Q  N+IK     I +  L+ + I+GG+A++ Q  VL    +IVV TP
Sbjct  406  FSLVICPTRELAIQVTNHIKSI---ISHTNLKVISIVGGMASQRQQRVLSKRPEIVVATP  462

Query  348  GRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            GRL +L++ G    + L  +  L +DEAD ++ QG+   +  +   +P   +   + + +
Sbjct  463  GRLWELITEGHQHLVELESLLCLGIDEADRMVEQGHFAELESILKTLPIHRTAMSKKERL  522

Query  405  VCSATLHSFD----VKKLSEK---------------------------------------  421
                T    +    V KL++K                                       
Sbjct  523  KKKETEEKRNKRRKVDKLNDKGEMIKGDQDDMDDQIPDEEMEELEQEEQNHLTTTHKRQT  582

Query  422  IMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANS  481
             +   T V++ G+   P +       + P  + + +   +   +  DV  K  T      
Sbjct  583  FVFSATLVNIPGDG-APTSQKKKYRKLTPIENLIEKVRFQRDYKLIDVTQKRLTAKNLLE  641

Query  482  PEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFS  541
             +++    +  K  Y    ++ +   + ++F  +      L          P     +  
Sbjct  642  TKIFCNLEE--KDMYLYYFVERYP-GRTLVFVNSIDCARRL---------IPIFNILEVP  689

Query  542  CVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH  601
               LH   +  +R +NL+RF+  D   LI TDVAARG+DI  V +VI+  +P   Q Y+H
Sbjct  690  VFALHAQMQQKQRLKNLDRFRTLDNVVLIATDVAARGLDIPLVQHVIHYQVPRTTQLYIH  749

Query  602  RIGRVGRAERMGLAISLVATEKEKVWYHVCSSR--GKGCYNTRLKEDGGCTIWYNEMQLL  659
            R GR  R+++ G+++ LV  ++  ++  + SS     G + T ++   G        + +
Sbjct  750  RSGRTARSDQDGISVVLVTPKERPLYIKLDSSIEHDIGNFPTDIRYMEGVRDRIELAKEI  809

Query  660  SEI--------EEHLNCTISQVEPDIKVPVDEFDGK  687
             ++         E         E DI++  D F   
Sbjct  810  DKLSHQSLKDNREKSWFKKQAEEMDIELDGDFFGEN  845


 Score = 95.6 bits (236),  Expect = 7e-19, Method: Composition-based stats.
 Identities = 27/80 (34%), Positives = 48/80 (60%), Gaps = 1/80 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILG-GGDVLMAAETGSGKTGAFSIP  59
            M+ ++   + P I + +  + +  PT+IQ+  IP+ +  G DV+ AA+TGSGKT AF IP
Sbjct  293  MSEWNSYNLDPLILKGLRSLGFSKPTEIQSSVIPVAVSSGYDVIGAAQTGSGKTLAFGIP  352

Query  60   VIQIVYETLKDQQEGKKGKT  79
            ++Q + + L+   +  + K 
Sbjct  353  MVQRILQHLRKHGQNVENKA  372


>sp|Q2GV49|SPB4_CHAGB ATP-dependent rRNA helicase SPB4 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / 
NBRC 6347 / NRRL 1970) OX=306901 GN=SPB4 PE=3 SV=1
Length=646

 Score = 206 bits (525),  Expect = 3e-56, Method: Composition-based stats.
 Identities = 92/382 (24%), Positives = 159/382 (42%), Gaps = 65/382 (17%)

Query  278  TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKY-------------------IDNPKL  318
            ++     +  +A+I+ P+RELA Q  N +  F K+                      P +
Sbjct  80   SEDPAKRHHVQAIIISPTRELASQIYNVLVSFLKFHAPSAHLLPHAKGDEKRPATTEPVV  139

Query  319  RELLIIGGVAA--RDQLSVLENGVDIVVGTPGRLDDLVSTGKLNL--SQVRFLVLDEADG  374
               L++GG      D  + L    +I++GTPGRL +L+ST  +    S    LV+DEAD 
Sbjct  140  VPQLLVGGTTKAAEDLSTFLRLSPNILIGTPGRLAELLSTPYVKAPSSSFEVLVMDEADR  199

Query  375  LLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE  434
            LL  G+S  + R+   +P      K+ +  + SA+L S  V++L    + +P  + ++ +
Sbjct  200  LLDLGFSQELTRILGYLP------KQRRTGLFSASL-SEAVERLITVGLLYPHKITVRVK  252

Query  435  DSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG  494
                                         +R   +  +  T        + + A + +  
Sbjct  253  S----------------------------LRDGGIVQERKTPMSLQMSYIVTPASQKIPA  284

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
               +    E +  ++I+F  T        +               FS V LHG  +P  R
Sbjct  285  LCQLLERLEPRPSRSIVFFSTCFAVKYFARVLH------GILPPGFSIVSLHGKLEPQVR  338

Query  555  KQNLERFKKGDVR-FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
            ++N ERF        L+ TD+AARG+DI  V  V+    P + + ++HR GR GRA R G
Sbjct  339  EKNFERFVNAASPTVLLTTDIAARGLDIPQVDLVVQHDPPTDTKVFIHRCGRAGRAGRRG  398

Query  614  LAISLVATEKEKVWYHVCSSRG  635
            LA+ ++   +E+ +  +   R 
Sbjct  399  LAVVMLQPGREEGYVQLLDVRQ  420


 Score = 84.0 bits (206),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 25/94 (27%), Positives = 41/94 (44%), Gaps = 4/94 (4%)

Query  9    VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETL  68
            + P I   +  M +  PT +Q     +  G  DV++ A TGSGKT AF IPV++ +  + 
Sbjct  22   LAPWILDYLSSMGFEQPTPVQKSCFDIFRGNKDVVVEAVTGSGKTLAFLIPVVERLLRS-  80

Query  69   KDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
               ++  K         S   +     Y+   +F
Sbjct  81   ---EDPAKRHHVQAIIISPTRELASQIYNVLVSF  111


>sp|Q0UP45|SPB4_PHANO ATP-dependent rRNA helicase SPB4 OS=Phaeosphaeria 
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 
OX=321614 GN=SPB4 PE=3 SV=1
Length=633

 Score = 206 bits (524),  Expect = 4e-56, Method: Composition-based stats.
 Identities = 102/552 (18%), Positives = 193/552 (35%), Gaps = 100/552 (18%)

Query  218  IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQV  277
            I   +          +++A +       +         V  +    G  +        ++
Sbjct  22   IIDAVDAMGFVKTTPVQHAAIPMFMKNSD--------VVVEAVTGSGKTLAFLIPIVERL  73

Query  278  TQ--TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNP-------------------  316
             +       +   A+I+ P+RELA Q    +    K+                       
Sbjct  74   LREDAPTKKHHVGAIIISPTRELATQIHTVLSSLLKFHAPSAAMLEPDDEDTDMEDADTP  133

Query  317  ----------KLRELLIIGG--VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQV  364
                      K    L++GG    A+D  + L+   +I++GTPGRL +L+ +  ++  Q 
Sbjct  134  PKPTFPPGTLKAVPQLLLGGSVTPAQDLSAFLKKSPNILIGTPGRLLELLRSPHVHCPQS  193

Query  365  RF--LVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKI  422
             F  LV+DEAD LL  G+ + + ++ +++P      K+ +  + SA++ S  V +L    
Sbjct  194  SFDALVMDEADRLLDLGFKEDLQKIISRLP------KQRRTGLFSASM-SEAVDQLIRVG  246

Query  423  MHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSP  482
            +  P  + +K +                +  R    L  S++ T   H            
Sbjct  247  LRNPVRIAVKVKARATGE------DGKIEDKRTPASLQMSYLVTPPSHK-----------  289

Query  483  EMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSC  542
                     +     + +  + +  ++I++  T    D  +    +   G       +  
Sbjct  290  ---------IPAMKKILSSLQPQPQKSILYLSTCFSVDYFQHVLPEVLQG-------YDI  333

Query  543  VCLHGDRKPHERKQNLERFKKGDVR-FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH  601
            V LHG      R++N  +F        L+ TDVAARG+DI  V  V  +  P + + ++H
Sbjct  334  VPLHGKHPDKVRRKNFNKFVDSVTPSILLTTDVAARGLDIPSVDLVFQLDPPSDPKTFIH  393

Query  602  RIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE  661
            R GR GRA R GLA++ +   +E+ +      R          E             ++ 
Sbjct  394  RCGRAGRAGRRGLAVTFLNPGREEDYIEFLQVRQTPISPLTTPE-------------ITV  440

Query  662  IEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKE  721
             +E      S++   ++     FD              +Y  H       + +L   E  
Sbjct  441  TDEDAKAVTSKIRKKVREDRALFDKAQRGFVSWVR---AYSKHTASSIFRIDDLDWTELG  497

Query  722  AQTSFLHLGYLP  733
                 L L  +P
Sbjct  498  NAWGLLTLPGMP  509


 Score = 90.2 bits (222),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 48/103 (47%), Gaps = 6/103 (6%)

Query  2    AAFSEM--GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
             +FS +   +   I  AV+ M ++  T +Q  +IP+ +   DV++ A TGSGKT AF IP
Sbjct  9    RSFSALTPALSEWIIDAVDAMGFVKTTPVQHAAIPMFMKNSDVVVEAVTGSGKTLAFLIP  68

Query  60   VIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            +++ +       ++   G   I    S   +     +   S+ 
Sbjct  69   IVERLLREDAPTKKHHVGAIII----SPTRELATQIHTVLSSL  107


>sp|Q6CUI6|DBP9_KLULA ATP-dependent RNA helicase DBP9 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP9 PE=3 SV=1
Length=594

 Score = 205 bits (521),  Expect = 4e-56, Method: Composition-based stats.
 Identities = 103/584 (18%), Positives = 195/584 (33%), Gaps = 129/584 (22%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
            S +     L   +   +++       +++++ +     E+             S     Y
Sbjct  14   SSSFDSFHLDSRLSQAIRSIGFKHPTLIQSSAIPLALQEKR---DIIAKASTGSGKTLAY  70

Query  266  IVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII-  324
            ++    +        +    A   +I+ P+RELA+Q L  +++   +    +++ L +  
Sbjct  71   LIPVIQTILDHKKADQNDEGATLGVILVPTRELAQQVLEVVEKLIVFCSQ-EIKCLNLSS  129

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            G V+     S+L    +I++ TP +L DL+    +N+ +++FLV+DE D +L+ GY + +
Sbjct  130  GNVSGNLLKSLLTENPEILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDL  189

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
             ++  ++P      K LQ  + SATL+  D++ L ++    P  + L  ++         
Sbjct  190  TKISERLP----LRKSLQTFLMSATLND-DIQHLKQQFCRSPAILKLNDDE---------  235

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
               VN    +L +   K       +      + G                          
Sbjct  236  ---VNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGLIK-----------------------  269

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
               + +IF         L+    Q G              L+ +   + R+  +E F K 
Sbjct  270  --GKTLIFVNNIDRGYRLKLVLEQFG---------IKSCILNSELPANSRQHIVEEFNKN  318

Query  565  DVRFLICTDVA-------------------------------------------------  575
              + LI TD                                                   
Sbjct  319  VYQLLIATDDTEYIKEEDEDLESEKTEDGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKE  378

Query  576  ---ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
               +RG+D   V  V+N  LP   ++YVHRIGR  RA + G++IS V   KE        
Sbjct  379  YGVSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPLKE--------  430

Query  633  SRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQ  692
                     +             +  + + +  L   +     DIK        +V   +
Sbjct  431  -----FGKHKPSMIKSAKKDEKILGRIIKQQAKLGFELQPYNFDIK--------QVEGFR  477

Query  693  KRAAGGGSYKGHVDILAPTVQELAALEKEAQTSFLHLGYLPNQL  736
             R   G      V I    ++EL      ++    H    P+ L
Sbjct  478  YRMEDGFRAVTQVAIREARIKELKQELLASEKLKRHFEENPHDL  521


 Score = 99.8 bits (247),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 3/102 (3%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILG-GGDVLMAAETGSGKTGAFSIPV  60
            ++F    +   ++QA+  + +  PT IQ+ +IPL L    D++  A TGSGKT A+ IPV
Sbjct  15   SSFDSFHLDSRLSQAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPV  74

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            IQ + +  K  Q  +    T+        +      +     
Sbjct  75   IQTILDHKKADQNDE--GATLGVILVPTRELAQQVLEVVEKL  114


>sp|Q6BZR4|DBP9_YARLI ATP-dependent RNA helicase DBP9 OS=Yarrowia 
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP9 PE=3 
SV=1
Length=544

 Score = 204 bits (518),  Expect = 5e-56, Method: Composition-based stats.
 Identities = 118/517 (23%), Positives = 173/517 (33%), Gaps = 98/517 (19%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
             K+    GL   +   +       AC +K   L  N               A +    G 
Sbjct  8    DKSFDSFGLDDRLLSGL------AACDMKQPTLIQN-TTIPLALDKGVDITAKAVTGSGK  60

Query  266  IVKSQHSGNAQVTQTKFLPNAPK-ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
             V         + + +      + ALIV P+REL EQ    I +  ++   P L+ L + 
Sbjct  61   TVAYLLPIFELMLRAEKEKRDIQTALIVVPTRELCEQVSKVITKLTQFC--PHLKSLNVT  118

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
              +      S+LE    I+VGTP RL        ++ S+V +LV+DEAD LLS GY + +
Sbjct  119  QQLGDDVISSLLEEKPSIIVGTPSRLLKYAKE--MDCSKVGYLVIDEADLLLSYGYKEDL  176

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
              +   +P      K     + SATL+                  DL  +     TV  V
Sbjct  177  IELSEMLP------KTKHTFIMSATLNKES---------------DLMKQQFCRSTVASV  215

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
             V    +  +L +   K                        SE  K L     V    + 
Sbjct  216  AVTAAEEERKLLQYYVK-----------------------CSERDKFL--LAYVMFKLQL  250

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
               + I+F      C  L  +  Q G              L+ +     R   +E+F KG
Sbjct  251  VKGKTIVFVNEIDRCYRLRLFLEQFG---------IKACVLNSELPIASRLHIVEQFNKG  301

Query  565  DVRFLICTDVA-------------------------ARGIDIHGVPYVINVTLPDEKQNY  599
                LICTD A                          RG+D   V +V+N  LP   + Y
Sbjct  302  VFNLLICTDEANKLAEASKSASKQTKEVSRAHEYSSTRGLDFMNVAFVLNFDLPLSSRAY  361

Query  600  VHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLL  659
            VHR+GR  RA + G A+S V              +       +  E     I  N+    
Sbjct  362  VHRVGRTARANKAGTALSFVVPAD-----QWGKDKVAKLDTAKRDEKVLKKIIKNQESQN  416

Query  660  SEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAA  696
             EI+   +  + QVE       D F    T G + A 
Sbjct  417  MEIKP-YSFDMKQVEGFRYRMDDAFRAVTTVGVREAR  452


 Score = 87.5 bits (215),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 36/174 (21%), Positives = 66/174 (38%), Gaps = 18/174 (10%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLIL-GGGDVLMAAETGSGKTGAFSIPV  60
             +F   G+   +   +   D   PT IQ  +IPL L  G D+   A TGSGKT A+ +P+
Sbjct  9    KSFDSFGLDDRLLSGLAACDMKQPTLIQNTTIPLALDKGVDITAKAVTGSGKTVAYLLPI  68

Query  61   IQIVYETLKDQQEGKKGKTTIKT-------GASVLNKWQMNPYDRGSAFAIGSDGLCCQS  113
             +++    K++++ +     + T          +    Q  P+ +              S
Sbjct  69   FELMLRAEKEKRDIQTALIVVPTRELCEQVSKVITKLTQFCPHLKSLNVTQQLGDDVISS  128

Query  114  REVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGF  167
               ++      T   +  K+  E+ C   G   +     +A L L      +G+
Sbjct  129  LLEEKPSIIVGTPSRLL-KYAKEMDCSKVGYLVI----DEADLLL-----SYGY  172


>sp|Q6BLM5|DBP9_DEBHA ATP-dependent RNA helicase DBP9 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP9 PE=3 SV=1
Length=586

 Score = 204 bits (520),  Expect = 5e-56, Method: Composition-based stats.
 Identities = 101/597 (17%), Positives = 201/597 (34%), Gaps = 135/597 (23%)

Query  210  KDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKS  269
            +  GL   +   +         +++++ +     E       K   +A +    G     
Sbjct  24   ESFGLDARLLQAIDQLGFENPTLIQSSAIPLAIEE-------KRDIIAKASTGSGKTAAY  76

Query  270  QHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAA  329
                   + Q +      K++I+ P+REL+ Q    +++   +  N K+R + I   ++ 
Sbjct  77   SIPIIQNLLQDESTEREIKSIILVPTRELSNQVSQFLEKLLIFC-NSKIRLINISSNLSD  135

Query  330  RDQLSVLENGVDIVVGTPGRLDDLVSTGK----LNLSQVRFLVLDEADGLLSQGYSDFIN  385
            +   S+L N  +I+V TP +L  ++        +NLS V+ L +DE D +LS GY + + 
Sbjct  136  QVINSLLINKPEIIVSTPAKLIQILEKNVNSNLINLSTVKNLTIDEVDLVLSYGYLEDLQ  195

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
            ++ + +P      K LQ  + SAT++  D+  +  K    P  + L  EDS  + +    
Sbjct  196  KLESYLP----IKKNLQTFLMSATIND-DLNDIKSKFCSRPAILKLNDEDSNQNNLVQYY  250

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
                     L   +                                    + +  IK   
Sbjct  251  AKTTEFDKFLLTYV-----------------------------------IFKLNLIK---  272

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
              + ++F         L+ +  Q G           C  L+ +   + R   +E++ K  
Sbjct  273  -GKTLVFVNNIDRGYRLKLFLEQFG---------VRCCILNSELPINSRLNIVEQYNKNV  322

Query  566  VRFLICTDVA---------------------------------------------ARGID  580
               LI TD                                               +RG+D
Sbjct  323  YNLLIATDETNDFTIQEDEKDEGEEIEENKNEENDGKTSKNTKKPNQKKDKEYGVSRGVD  382

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT----------------EKE  624
               V  V+N  LP   ++Y+HR+GR  RA + G+A+S V                  + E
Sbjct  383  FRNVACVLNFDLPTSSKSYIHRVGRTARAGKSGMALSFVLPLNEFGKHKTASLSTAKKDE  442

Query  625  KVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVE-PDIKVPVDE  683
            KV   +   +    +  +  +     +     +            + +    ++K  +  
Sbjct  443  KVLRRIVRQQSNNGFEIKPYQFDMKQVEGFRYRAEDAFRAVTQSAVREARIKELKNELVN  502

Query  684  FDGKVTYGQKRAAGGGSYKGHVDILAPT-----VQELAA--LEKEAQTSFLHLGYLP  733
             D    + ++      S + H   L PT     ++ +    L + A+     +G++P
Sbjct  503  SDKLKRFFEENPQDLASLR-HDKELHPTRVQTHLKRVPEYLLPESARADHKKIGFVP  558


 Score = 97.1 bits (240),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 53/102 (52%), Gaps = 4/102 (4%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLIL-GGGDVLMAAETGSGKTGAFSIPV  60
              +   G+   + QA++++ +  PT IQ+ +IPL +    D++  A TGSGKT A+SIP+
Sbjct  21   TTWESFGLDARLLQAIDQLGFENPTLIQSSAIPLAIEEKRDIIAKASTGSGKTAAYSIPI  80

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            IQ + +   D+   ++ K+ I      L+       ++   F
Sbjct  81   IQNLLQ---DESTEREIKSIILVPTRELSNQVSQFLEKLLIF  119


>sp|A1CL59|SPB4_ASPCL ATP-dependent rRNA helicase spb4 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / 
NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=spb4 PE=3 SV=1
Length=639

 Score = 206 bits (523),  Expect = 6e-56, Method: Composition-based stats.
 Identities = 87/402 (22%), Positives = 160/402 (40%), Gaps = 73/402 (18%)

Query  262  PDGYIVKSQHSGNAQVTQTK--FLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNP---  316
              G  +        ++ + +     +   A+I+ P+RELA Q  + ++    +       
Sbjct  61   GSGKTLSFLLPIVEKLLRLEEPIKKHHIGAIIISPTRELASQIHSVMQSLLAFHPPSAAA  120

Query  317  -------------------KLRELLIIGG--VAARDQLSVLENGVDIVVGTPGRLDDLVS  355
                               K+   L++GG    A D    L+   +++V TPGRL +L+S
Sbjct  121  MTPLDDDDAPRQKFPSSTLKVVPQLLLGGSTTPAEDLSRFLKLSPNVLVSTPGRLLELLS  180

Query  356  TGKLNL--SQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSF  413
            +  ++   S    LVLDEAD LL  G+ + +  +  ++P      K+ +  + SA++ S 
Sbjct  181  SPHVHCPQSSFEMLVLDEADRLLDLGFKETLQNILRRLP------KQRRTGLFSASV-SE  233

Query  414  DVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKD  473
             V ++    +  P  + +K + +                 R    L  +++ T  +H   
Sbjct  234  AVDQIVRVGLRNPVKIMVKVKGT-----------SGVDDKRTPASLQMTYLSTPPLHKFA  282

Query  474  NTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGP  533
              +   +S                     +    ++I F  T    D L          P
Sbjct  283  ALKNILSSV--------------------QPTPQKSIFFVSTCSGVDYLSAIL------P  316

Query  534  DKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR-FLICTDVAARGIDIHGVPYVINVTL  592
               G  F  + LHG  + + R++N  RF        L+ TDVA+RG+DI  V  V+ +  
Sbjct  317  LLLGDDFLLIPLHGKHQANVRQKNFNRFLSSHSPAILLTTDVASRGLDIPSVDLVVQIDP  376

Query  593  PDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            P + + ++HR GR GRA R GL++ ++   +E+ +      R
Sbjct  377  PSDPKTFIHRCGRAGRAGRRGLSVVMLHPGREEDYVSFLDVR  418


 Score = 91.3 bits (225),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query  8    GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYET  67
             +   + +A+  M +   T +QA +IPL +   DV++ A TGSGKT +F +P+++ +   
Sbjct  20   PLSEWVLEAMSSMGFARMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLLPIVEKLLRL  79

Query  68   LKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
                +E  K         S   +     +    + 
Sbjct  80   ----EEPIKKHHIGAIIISPTRELASQIHSVMQSL  110


>sp|Q4X0C2|DBP9_ASPFU ATP-dependent RNA helicase dbp9 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=dbp9 PE=3 SV=1
Length=649

 Score = 206 bits (523),  Expect = 6e-56, Method: Composition-based stats.
 Identities = 106/556 (19%), Positives = 191/556 (34%), Gaps = 53/556 (10%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             + L L   +   +  +       +++  +                 +A +K   G    
Sbjct  59   FESLNLDPRLRQALIKEQFTKPTPVQSKAIPLAL--------EGKDILARAKTGSGKTAA  110

Query  269  SQHSGNAQVTQTKFLPN---APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
                    + Q K       A   LI+ P+RELAEQ  + I +F  +     +R + +  
Sbjct  111  YVLPILQTILQKKAADPSLKATTGLILVPTRELAEQVQSVIIKFSAFC-GKDVRSVNLTQ  169

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
             V+   Q ++L +  D++V TP R+   + T  L+L  +  LV+DEAD +LS GY + IN
Sbjct  170  KVSDAVQRTMLADYPDLIVSTPARVIANLGTSALSLENLTHLVIDEADLVLSYGYDEDIN  229

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
             +   IP      + +Q  + SATL S +V  L       P  + L+ ++     +   V
Sbjct  230  ALAKAIP------RGVQTFLMSATLTS-EVDTLKGLFCRSPVILKLEDKEDEGAGISQFV  282

Query  446  VPVNPKTDRLWERLGKSHIRTD-----DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRA  500
            V        L   +              V   D         E +     +L  E  + +
Sbjct  283  VRCAEDEKFLLTYVIFKLQLIKGKVIIFVGDIDRCYRLKLFLEQFGIKSCVLNSELPINS  342

Query  501  IKE--HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERK---  555
                  + ++ +       D   +           +            G  +  + +   
Sbjct  343  RIHVVQEFNKGVYDIIIAADEQEVMGLRTSSKKSKEATDGDDEAKDKMGSSEDEDNEPEQ  402

Query  556  ----QNLERFKKGDVRFLICTDV-AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAE  610
                   E+ +K   +     D   +RGID   V  V+N  LP   ++Y HRIGR GRA 
Sbjct  403  SGKSARPEKRRKTSGK---AKDYGISRGIDFQNVACVLNFDLPTTSKSYTHRIGRTGRAG  459

Query  611  RMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTI  670
            + G+A+S V              +       +  E     I   + +L  E++   +  +
Sbjct  460  KAGMALSFVVPAD-----KFGKHKPTSFPTAKHDESVLAKIVKKQAKLGHEVKP-YHFEM  513

Query  671  SQVEPDIKVPVDEFD---------GKVTYGQKRAAGGGSYKGHVDILAPTVQELA-ALEK  720
             QV+       D             +    ++        K H +     +++L    E 
Sbjct  514  KQVDAFRYRMTDALRAVTRLAIQEARAREIRQELVKSEKLKRHFEENPEELKQLRHDGEL  573

Query  721  EAQTSFLHLGYLPNQL  736
             A     HL ++P+ L
Sbjct  574  RAARIQPHLKHIPDYL  589


 Score = 102 bits (254),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 47/103 (46%), Gaps = 3/103 (3%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F  + + P + QA+ +  +  PT +Q+++IPL L G D+L  A+TGSGKT A+ +P++
Sbjct  57   TDFESLNLDPRLRQALIKEQFTKPTPVQSKAIPLALEGKDILARAKTGSGKTAAYVLPIL  116

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            Q + +        K    T         +           F+ 
Sbjct  117  QTILQKKAADPSLK---ATTGLILVPTRELAEQVQSVIIKFSA  156


>sp|A1DHV3|DBP9_NEOFI ATP-dependent RNA helicase dbp9 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp9 
PE=3 SV=1
Length=619

 Score = 204 bits (520),  Expect = 1e-55, Method: Composition-based stats.
 Identities = 106/556 (19%), Positives = 192/556 (35%), Gaps = 53/556 (10%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             + L L   +   +  +       +++  +                 +A +K   G    
Sbjct  29   FESLNLDPRLRQALIREQFTKPTPVQSKAIPLAL--------EGKDILARAKTGSGKTAA  80

Query  269  SQHSGNAQVTQTKFLPN---APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
                    + Q K       A   L++ P+RELAEQ  + I +F  +     +R + +  
Sbjct  81   YVLPILQTILQKKAADPSLKATTGLVLVPTRELAEQVQSVIIKFSAFC-GKDVRSVNLTQ  139

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
             V+   Q ++L +  D++V TP R+   + T  L+L  +  LV+DEAD +LS GY + IN
Sbjct  140  KVSDAVQRTMLADYPDLIVSTPARVIANLGTSALSLEHLTHLVIDEADLVLSYGYDEDIN  199

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
             +   IP      + +Q  + SATL S +V  L       P  + L+ ++     +   V
Sbjct  200  ALAKAIP------RGVQTFLMSATLTS-EVDTLKGLFCRSPVILKLEDKEDEGAGISQFV  252

Query  446  VPVNPKTDRLWERLGKSHIRTD-----DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRA  500
            V        L   +              V   D         E +     +L  E  + +
Sbjct  253  VRCAEDEKFLLTYVIFKLQLIKGKVIIFVGDIDRCYRLKLFLEQFGIKSCVLNSELPINS  312

Query  501  IKE--HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERK---  555
                  + ++ +       D   +           +            G  +  + +   
Sbjct  313  RIHVVQEFNKGVYDIIIAADEQEVMGSRTSSKKSKEATDGDDEAKDKMGSSEDEDNEPEQ  372

Query  556  ----QNLERFKKGDVRFLICTDV-AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAE  610
                   E+ +K   +     D   +RGID   V  V+N  LP   ++Y HRIGR GRA 
Sbjct  373  SGKSARPEKRRKTSGK---AKDYGISRGIDFQNVACVLNFDLPTTSKSYTHRIGRTGRAG  429

Query  611  RMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTI  670
            + G+A+S V    E         +       +  E     I   + +L  E++   +  +
Sbjct  430  KAGMALSFVVPADE-----FGKHKPTSFPTAKHDESVLAKIVKKQAKLGHEVKP-YHFEM  483

Query  671  SQVEPDIKVPVDEFD---------GKVTYGQKRAAGGGSYKGHVDILAPTVQELA-ALEK  720
             QV+       D             +    ++        K H +     +++L    E 
Sbjct  484  KQVDAFRYRMTDALRAVTRLAIQEARAREIRQELVKSEKLKRHFEENPEELKQLRHDGEL  543

Query  721  EAQTSFLHLGYLPNQL  736
             A     HL ++P+ L
Sbjct  544  RAARIQPHLKHIPDYL  559


 Score = 101 bits (252),  Expect = 5e-21, Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 46/103 (45%), Gaps = 3/103 (3%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F  + + P + QA+    +  PT +Q+++IPL L G D+L  A+TGSGKT A+ +P++
Sbjct  27   TDFESLNLDPRLRQALIREQFTKPTPVQSKAIPLALEGKDILARAKTGSGKTAAYVLPIL  86

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            Q + +        K    T         +           F+ 
Sbjct  87   QTILQKKAADPSLK---ATTGLVLVPTRELAEQVQSVIIKFSA  126


>sp|Q4R4T6|DDX28_MACFA Probable ATP-dependent RNA helicase DDX28 
OS=Macaca fascicularis OX=9541 GN=DDX28 PE=2 SV=1
Length=546

 Score = 203 bits (516),  Expect = 1e-55, Method: Composition-based stats.
 Identities = 99/439 (23%), Positives = 165/439 (38%), Gaps = 64/439 (15%)

Query  208  NGKDLGLAFEIPPHMKNQA---LFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDG  264
            N  DLGL   +   ++  A   + P  V  N   +   G              LS     
Sbjct  127  NFADLGLEPRVLHALQEVAPEVVQPTTVQSNTIPQLLRGRHVLCAAETGSGKTLS-----  181

Query  265  YIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII  324
            Y++        Q +       AP+ L++ PSRELA+Q     +   +   +  L    + 
Sbjct  182  YLLPLFQRLMVQPSLDSLRIPAPRGLVLVPSRELAQQVQAVAQPLGR---SLGLLVRDLE  238

Query  325  GGVAARDQLSVLENGV--DIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD  382
            GG         L      D++V TPG L   + +  ++L Q+ FLVLDEAD LL + + +
Sbjct  239  GGHGMCRIRMQLARQPSADVLVATPGALWKALKSRLISLEQLSFLVLDEADTLLDESFLE  298

Query  383  FINRMHN--QIPQVTSDGKRL-----QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED  435
             ++ +     I    +D +       Q+++  AT     V +L +K+             
Sbjct  299  LVDCILEKSHIADGPADLEDRFNPKAQLVLVGATFP-EGVGQLLDKV-------------  344

Query  436  SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGE  495
            + PD V  +    +     +   + ++ +R                 +  +E + ILK  
Sbjct  345  ASPDAVTTI---TSSNLHCIMPHVKQTFLR-------------LKGADKVAELVHILKHH  388

Query  496  YAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERK  555
               RA +       ++FC +    + L               H+   + L G      R 
Sbjct  389  N--RAERTGPSGTVLVFCNSSSTVNWLGYIL---------DDHKIQHLRLQGQMPALMRA  437

Query  556  QNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM--G  613
               + F+K     L+CTD+A+RG+D  GV  V+N   P   Q+Y+HR GRVGR      G
Sbjct  438  GIFQSFQKSSRDILLCTDIASRGLDSTGVELVVNYDFPPTLQDYIHRAGRVGRVGSEVPG  497

Query  614  LAISLVA-TEKEKVWYHVC  631
              IS V       +   + 
Sbjct  498  TVISFVTHPWDVSLVQKIE  516


 Score = 80.6 bits (197),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 67/155 (43%), Gaps = 10/155 (6%)

Query  4    FSEMGVMPEIAQAVEEM--DWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            F+++G+ P +  A++E+  + + PT +Q+ +IP +L G  VL AAETGSGKT ++ +P+ 
Sbjct  128  FADLGLEPRVLHALQEVAPEVVQPTTVQSNTIPQLLRGRHVLCAAETGSGKTLSYLLPLF  187

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHG  121
            Q +   ++   +  +             +                  L    R+++  HG
Sbjct  188  QRLM--VQPSLDSLRIPAPRGLVLVPSRELAQQVQAVAQPLGRS---LGLLVRDLEGGHG  242

Query  122  CRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASL  156
                +  +  +   +V     G     W  +++ L
Sbjct  243  MCRIRMQLARQPSADVLVATPGAL---WKALKSRL  274


>sp|A1D699|SPB4_NEOFI ATP-dependent rRNA helicase spb4 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=spb4 
PE=3 SV=1
Length=640

 Score = 205 bits (521),  Expect = 1e-55, Method: Composition-based stats.
 Identities = 92/402 (23%), Positives = 159/402 (40%), Gaps = 73/402 (18%)

Query  262  PDGYIVKSQHSGNAQVTQTK--FLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNP---  316
              G  +        ++ + +     +   A+I+ P+RELA Q  N +     +       
Sbjct  61   GSGKTLSFLIPVVEKLLRLEEPIKKHHIGAIIISPTRELASQIYNVLSSLLAFHPPSAAA  120

Query  317  -------------------KLRELLIIGG--VAARDQLSVLENGVDIVVGTPGRLDDLVS  355
                               K+   L++GG    A D  + L+   +++V TPGRL +L+S
Sbjct  121  INPSEDDDAPRPKFPSSTLKVVPQLLLGGSTTPAEDLSTFLKRSPNVLVSTPGRLLELLS  180

Query  356  TGKLNL--SQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSF  413
            +  ++   S    LVLDEAD LL  G+ + +  +  ++P      K+ +  + SA++ S 
Sbjct  181  SPHVHCPQSSFEMLVLDEADRLLDLGFKETLQNILRRLP------KQRRTGLFSASV-SE  233

Query  414  DVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKD  473
             V ++    +  P  V +K +                   R    L  +++ T   H   
Sbjct  234  AVDQIVRVGLRNPVKVMVKVKGG-----------SGVDDKRTPASLQMTYLTTPPSHKFA  282

Query  474  NTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGP  533
              +   +S                     +    + I F  T    D L          P
Sbjct  283  ALKRILSSV--------------------QPTPLKTIFFVSTCSGVDYLSAIL------P  316

Query  534  DKKGHQFSCVCLHGDRKPHERKQNLERFKKG-DVRFLICTDVAARGIDIHGVPYVINVTL  592
               G  F  + LHG  + + R++N  RF    D   L+ TDVAARG+DI  V  V+ +  
Sbjct  317  LLLGDDFLLIPLHGKHQANVRQKNFNRFINSHDPAILLTTDVAARGLDIPSVDLVVQIDP  376

Query  593  PDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            P + ++++HR GR GRA R GL++ L+   +E+ +      R
Sbjct  377  PSDPKSFIHRCGRAGRAGRRGLSVVLLHPGREEDYVSFLEVR  418


 Score = 93.7 bits (231),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 26/94 (28%), Positives = 44/94 (47%), Gaps = 4/94 (4%)

Query  9    VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETL  68
            +   + +A+  M +   T +QA +IPL +   DV++ A TGSGKT +F IPV++ +    
Sbjct  21   LSEWVLEAMSSMGFTRMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLIPVVEKLLRL-  79

Query  69   KDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
               +E  K         S   +     Y+  S+ 
Sbjct  80   ---EEPIKKHHIGAIIISPTRELASQIYNVLSSL  110


>sp|Q4WYJ7|SPB4_ASPFU ATP-dependent rRNA helicase spb4 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC 
A1100 / Af293) OX=330879 GN=spb4 PE=3 SV=2
Length=640

 Score = 205 bits (521),  Expect = 1e-55, Method: Composition-based stats.
 Identities = 92/402 (23%), Positives = 159/402 (40%), Gaps = 73/402 (18%)

Query  262  PDGYIVKSQHSGNAQVTQTK--FLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNP---  316
              G  +        ++ + +     +   A+I+ P+RELA Q  N +     +       
Sbjct  61   GSGKTLSFLIPVVEKLLRLEEPIKKHHVGAIIISPTRELASQIYNVLSSLLAFHPPSAAA  120

Query  317  -------------------KLRELLIIGG--VAARDQLSVLENGVDIVVGTPGRLDDLVS  355
                               K+   L++GG    A D  + L+   +++V TPGRL +L+S
Sbjct  121  INPSEDDDAPRPKFPSSTLKVVPQLLLGGSTTPAEDLSTFLKRSPNVLVSTPGRLLELLS  180

Query  356  TGKLNL--SQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSF  413
            +  ++   S    LVLDEAD LL  G+ + +  +  ++P      K+ +  + SA++ S 
Sbjct  181  SPHVHCPQSSFEMLVLDEADRLLDLGFKETLQNILRRLP------KQRRTGLFSASV-SE  233

Query  414  DVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKD  473
             V ++    +  P  V +K +                   R    L  +++ T   H   
Sbjct  234  AVDQIVRVGLRNPVKVMVKVKGG-----------SGVDDKRTPASLQMTYLTTPPSHKFA  282

Query  474  NTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGP  533
              +   +S                     +    + I F  T    D L          P
Sbjct  283  ALKRIVSSV--------------------QPTPLKTIFFVSTCSGVDYLSAIL------P  316

Query  534  DKKGHQFSCVCLHGDRKPHERKQNLERFKKG-DVRFLICTDVAARGIDIHGVPYVINVTL  592
               G  F  + LHG  + + R++N  RF    D   L+ TDVAARG+DI  V  V+ +  
Sbjct  317  LLLGDDFLLIPLHGKHQANVRQKNFNRFINSHDPAILLTTDVAARGLDIPSVDLVVQIDP  376

Query  593  PDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            P + ++++HR GR GRA R GL++ L+   +E+ +      R
Sbjct  377  PSDPKSFIHRCGRAGRAGRRGLSVVLLHPGREEDYVSFLEVR  418


 Score = 93.7 bits (231),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 26/94 (28%), Positives = 44/94 (47%), Gaps = 4/94 (4%)

Query  9    VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETL  68
            +   + +A+  M +   T +QA +IPL +   DV++ A TGSGKT +F IPV++ +    
Sbjct  21   LSEWVLEAMSSMGFTRMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLIPVVEKLLRL-  79

Query  69   KDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
               +E  K         S   +     Y+  S+ 
Sbjct  80   ---EEPIKKHHVGAIIISPTRELASQIYNVLSSL  110


>sp|P0CR05|ROK1_CRYNB ATP-dependent RNA helicase ROK1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=ROK1 PE=3 SV=1
Length=620

 Score = 204 bits (518),  Expect = 2e-55, Method: Composition-based stats.
 Identities = 89/439 (20%), Positives = 161/439 (37%), Gaps = 108/439 (25%)

Query  255  FVALSKAPDG------YIVKS--QHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNI  306
               L  AP G      Y++ +  +    A+  +        +AL+V P+ +LA Q    I
Sbjct  161  RDTLCVAPTGSGKTLSYVLPTIVKLREPARKLKGTEEGKGVRALVVVPTHDLAVQIQGVI  220

Query  307  K--QFKKYIDNPKLREL------------LIIGGVAARDQLSVLEN--------------  338
            K     ++  +  L +              +  G     ++   E+              
Sbjct  221  KAVTMGRHWRSMVLTKATEKAVWESAPGEAVKTGEDGDSEMKDGEDSGDEEEDEDDNEST  280

Query  339  -----------------GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYS  381
                             G+D++V TP RL  L+ + +++L++ ++++LDE+D LLS  + 
Sbjct  281  GSVDEFAPKVSGNPEGLGIDVLVATPERLHHLIDSRRISLARTKYVILDESDRLLSSDFL  340

Query  382  DFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG-EDSVPDT  440
              +  + +           +Q    SAT+     + L++K +       + G +DS   T
Sbjct  341  PQVEPILSAC-----SNPAVQKCFLSATMP-AGAESLAKKWLKDGGVRVVVGVKDSAVTT  394

Query  441  VHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRA  500
            V   ++    ++ +L               A  N       P                  
Sbjct  395  VDQSLLYTGSESGKLL--------------ALRNLISSGQLPY-----------------  423

Query  501  IKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLER  560
                    ++IF ++    + L +  +  G              +HG +   +R + ++ 
Sbjct  424  -------PSLIFVQSIDRAEELYKTLVLDG---------IKVDAVHGGKAKTKRDEAIKD  467

Query  561  FKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            F+ G V  L+ T+V ARG+D  GV  VIN   P    +Y+HRIGR GRA R G AI+   
Sbjct  468  FRVGAVWMLVVTEVLARGMDFRGVKVVINYDFPQTVPSYIHRIGRTGRAGRPGKAITFFN  527

Query  621  TEKEKVWYHVCSS-RGKGC  638
             E       + +  R  GC
Sbjct  528  IEDGPYLRTIANVLRSSGC  546


 Score = 60.5 bits (145),  Expect = 4e-08, Method: Composition-based stats.
 Identities = 21/118 (18%), Positives = 40/118 (34%), Gaps = 3/118 (3%)

Query  12   EIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQ  71
             +  A+   +      +Q      +L   D L  A TGSGKT ++ +P I  + E  +  
Sbjct  133  PLLSALSRANIHSLWGVQCAVGGCLLEDRDTLCVAPTGSGKTLSYVLPTIVKLREPARKL  192

Query  72   QEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD---GLCCQSREVKEWHGCRATK  126
            +  ++GK          +   +       A  +G      +  ++ E   W       
Sbjct  193  KGTEEGKGVRALVVVPTHDLAVQIQGVIKAVTMGRHWRSMVLTKATEKAVWESAPGEA  250


>sp|A7TPC9|DBP9_VANPO ATP-dependent RNA helicase DBP9 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=DBP9 PE=3 SV=2
Length=597

 Score = 203 bits (516),  Expect = 2e-55, Method: Composition-based stats.
 Identities = 109/591 (18%), Positives = 202/591 (34%), Gaps = 120/591 (20%)

Query  200  KGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALS  259
               + F    + L L   +   +K        ++++  +     E+              
Sbjct  14   DDSISF----ESLQLDTRLLQAIKRNGFKNPTLIQSHAIPLALQEKR---DIIAKAATGC  66

Query  260  KAPDGYIVKSQHSGNAQVTQTKFLPNAPK---ALIVEPSRELAEQTLNNIKQFKKYIDNP  316
                 Y++    +            +       +I+ P+RELA+Q  + + +   Y  N 
Sbjct  67   GKTLAYLIPVIQTILDYKKTNTDKIDGTSNTLGIILVPTRELAQQVNDVLDKMILYCSN-  125

Query  317  KLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTG--KLNLSQVRFLVLDEADG  374
             +R L I   + +    S+L    +I++ TPG+L  L+ T    ++L +++FLV+DE D 
Sbjct  126  DIRSLNISSDMPSSVLTSLLLEKPEIIIATPGKLMTLLDTNVESVSLEELKFLVIDEVDL  185

Query  375  LLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE  434
            +L+ GY + ++++   +P      K LQ  + SATL+  D+++L ++    P  +    +
Sbjct  186  VLTFGYKEDLSKIAEYLP----LKKNLQTFLMSATLND-DIQELKKEFCRAPAILKFNDD  240

Query  435  DSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG  494
            +   D                  +L + +++T                   SE  K L  
Sbjct  241  EISKDK----------------NKLIQYYVKT-------------------SEFDKFLLC  265

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
             Y +  +   K  + +IF         L+    Q G              L+ +   + R
Sbjct  266  -YVIFKLGLIK-GKTLIFVNNIDRGYRLKLVLEQFG---------IKSCILNSELPANSR  314

Query  555  KQNLERFKKGDVRFLICTDVA---------------------------------------  575
            +  +++F K     LI TD                                         
Sbjct  315  QHIVDQFNKNVYHLLIATDDTEYIKEEDEENDDEIETNSEEQDKVEDSNDTKDKKGKKAS  374

Query  576  ----------ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
                      +RG+D   V  V+N  LP   ++YVHRIGR  RA + G AIS V      
Sbjct  375  KIKKDKEFGVSRGVDFQNVACVLNFDLPTTAKSYVHRIGRTARAGKTGTAISFVVP----  430

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFD  685
                    +     +T+  E     I   + +L  E++   +    Q+E       D F 
Sbjct  431  -LKEFGKHKPSMYQSTKRDEKILSRIIKQQSKLGLELQP-YSFDTKQIEGFRYRMEDGFR  488

Query  686  GKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKEAQTSFLHLGYLPNQL  736
              VT    R A     K  +       +      +E Q+        P+++
Sbjct  489  -AVTQVAIREARVKELKDELLASEKLKRHFEENPQELQSLRHDKELHPSRV  538


 Score = 100 bits (248),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 2/102 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILG-GGDVLMAAETGSGKTGAFSIPVI  61
            +F  + +   + QA++   +  PT IQ+ +IPL L    D++  A TG GKT A+ IPVI
Sbjct  18   SFESLQLDTRLLQAIKRNGFKNPTLIQSHAIPLALQEKRDIIAKAATGCGKTLAYLIPVI  77

Query  62   QIVYETLKDQQEGKKGKT-TIKTGASVLNKWQMNPYDRGSAF  102
            Q + +  K   +   G + T+        +      D     
Sbjct  78   QTILDYKKTNTDKIDGTSNTLGIILVPTRELAQQVNDVLDKM  119


>sp|P0CR04|ROK1_CRYNJ ATP-dependent RNA helicase ROK1 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=ROK1 PE=3 SV=1
Length=620

 Score = 203 bits (516),  Expect = 4e-55, Method: Composition-based stats.
 Identities = 89/439 (20%), Positives = 161/439 (37%), Gaps = 108/439 (25%)

Query  255  FVALSKAPDG------YIVKS--QHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNI  306
               L  AP G      Y++ +  +    A+  +        +AL+V P+ +LA Q    I
Sbjct  161  RDTLCVAPTGSGKTLSYVLPTIVKLREPARKLKGTEEGKGVRALVVVPTHDLAVQIQGVI  220

Query  307  K--QFKKYIDNPKLREL------------LIIGGVAARDQLSVLEN--------------  338
            K     ++  +  L +              +  G     ++   E+              
Sbjct  221  KAVTMGRHWRSMVLTKATEKAVWESAPGEAVKTGEDGDSEIKDGEDSGDEEEDEDDNGST  280

Query  339  -----------------GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYS  381
                             G+D++V TP RL  L+ + +++L++ ++++LDE+D LLS  + 
Sbjct  281  GSVDEFAPKVSGNPEGLGIDMLVATPERLHHLIDSRRISLARTKYVILDESDRLLSSDFL  340

Query  382  DFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG-EDSVPDT  440
              +  + +           +Q    SAT+     + L++K +       + G +DS   T
Sbjct  341  PQVEPILSAC-----SNPAVQKCFLSATMP-AGAESLAKKWLKDGGVRVVVGVKDSAVTT  394

Query  441  VHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRA  500
            V   ++    ++ +L               A  N       P                  
Sbjct  395  VDQSLLYTGSESGKLL--------------ALRNLISSGQLPY-----------------  423

Query  501  IKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLER  560
                    ++IF ++    + L +  +  G              +HG +   +R + ++ 
Sbjct  424  -------PSLIFVQSIDRAEELYKTLVLDG---------IKVDAVHGGKAKTKRDEAIKD  467

Query  561  FKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            F+ G V  L+ T+V ARG+D  GV  VIN   P    +Y+HRIGR GRA R G AI+   
Sbjct  468  FRVGAVWMLVVTEVLARGMDFRGVKVVINYDFPQTVPSYIHRIGRTGRAGRPGKAITFFN  527

Query  621  TEKEKVWYHVCSS-RGKGC  638
             E       + +  R  GC
Sbjct  528  IEDGPYLRTIANVLRSSGC  546


 Score = 60.5 bits (145),  Expect = 4e-08, Method: Composition-based stats.
 Identities = 21/118 (18%), Positives = 40/118 (34%), Gaps = 3/118 (3%)

Query  12   EIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQ  71
             +  A+   +      +Q      +L   D L  A TGSGKT ++ +P I  + E  +  
Sbjct  133  PLLSALSRANIHSLWGVQCAVGGCLLEDRDTLCVAPTGSGKTLSYVLPTIVKLREPARKL  192

Query  72   QEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD---GLCCQSREVKEWHGCRATK  126
            +  ++GK          +   +       A  +G      +  ++ E   W       
Sbjct  193  KGTEEGKGVRALVVVPTHDLAVQIQGVIKAVTMGRHWRSMVLTKATEKAVWESAPGEA  250


>sp|O60080|DBP9_SCHPO ATP-dependent RNA helicase dbp9 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp9 
PE=3 SV=1
Length=595

 Score = 202 bits (514),  Expect = 4e-55, Method: Composition-based stats.
 Identities = 88/446 (20%), Positives = 165/446 (37%), Gaps = 52/446 (12%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K   D  L   +   +          +++  +                 VA ++   G  
Sbjct  14   KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLAL--------EGKDLVAQARTGSGKT  65

Query  267  VKSQHSGNAQV---TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLI  323
                      +    Q         AL++ P+RELA+Q  N +++   +     +R + +
Sbjct  66   AAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKH-IRFINV  124

Query  324  IGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDF  383
                +   Q  +L +  DIV+ TP R    V++G L L +++FLV+DEAD +LS GY++ 
Sbjct  125  ATNSSDTVQRPLLLDLPDIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNED  184

Query  384  INRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHH  443
            +  +   +P+ T      Q  + SATL S ++  L + +   P  + +K +++      +
Sbjct  185  MKTLSRSLPRGT------QSFLMSATL-SKNIASLQKLVCRNPFILAVKDKEASGKLTQY  237

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI--------LKGE  495
            VV         L   L K  +    +    N        +++ E   +        L   
Sbjct  238  VVKCSEQDKFLLAYILLKLRLIKGKILIFVNEINRCYRLKLFLEQFGLKSLVLNSELPVN  297

Query  496  YAVRAIKEHKMD--QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
              +  ++++     Q II           E   + +    +          +  D+   +
Sbjct  298  SRLHILEQYNKGLYQIIIATD--------ESGMMGEIEELENNVDFVEEEVISTDQPTLD  349

Query  554  RKQNLERFKKGDVRFLICTDV---------------AARGIDIHGVPYVINVTLPDEKQN  598
            + ++ E     D   L                     ARG+D   V  V+N  +P   ++
Sbjct  350  KMKDQENADVNDESILAAAKDKSKKKKRVKQDKEYGVARGLDFENVACVLNFDMPSNTKS  409

Query  599  YVHRIGRVGRAERMGLAISLVATEKE  624
            Y+HRIGR  RA + G A+S V  + E
Sbjct  410  YIHRIGRTARAGKPGTAMSFVVPKSE  435


 Score = 107 bits (267),  Expect = 6e-23, Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 3/103 (3%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              FS+  + P + +A+ + ++  PT +Q+E+IPL L G D++  A TGSGKT A+ IP++
Sbjct  14   KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPIL  73

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            +++ +  K   E ++G            +     Y+       
Sbjct  74   ELLLKQ-KQIDENQRG--IFALLLVPTRELAQQVYNVLEKLTA  113


>sp|P0CQ94|DBP7_CRYNJ ATP-dependent RNA helicase DBP7 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=DBP7 PE=3 SV=1
Length=948

 Score = 206 bits (525),  Expect = 7e-55, Method: Composition-based stats.
 Identities = 92/526 (17%), Positives = 166/526 (32%), Gaps = 116/526 (22%)

Query  219  PPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQV-  277
             P    +   P  +          G+E  K  P    +  ++   G  +         + 
Sbjct  223  KPTGIQRNCLPYMLSSPLNPDKKAGDEGPKEEPLRDVLIQAQTGSGKTLSYLLPIVQTLL  282

Query  278  --TQTKFLPN--APKALIVEPSRELAEQTLNNIKQFKKYIDN-----------------P  316
              ++  ++       A+I+ P+RELA+Q    ++Q                         
Sbjct  283  PLSRLSYIDRSIGTLAIILAPTRELAQQISKVLEQLLHMSFAASKEGSDDEDEDDRPFTR  342

Query  317  KLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGL  375
             L   L+ GG     + + L  GV I+V TPGRL D + +T     ++  FLVLDEAD L
Sbjct  343  WLVSGLLTGGSTRTHEKAKLRKGVPILVSTPGRLLDHLQNTMSFQCAKTMFLVLDEADRL  402

Query  376  LSQGYSDFINRMHNQIPQVTSD---------------------GKRLQVIVCSATLHSFD  414
            +  G+ + I  +   +     +                      +    ++CSAT+    
Sbjct  403  MDLGFEETIQGIIKALEGRRRNEINIEKEMDKEGGGTMRWPFWDRGRLNVLCSATV-DAK  461

Query  415  VKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDN  474
            V++L+   +  P     + +++              K D + + L ++        +++ 
Sbjct  462  VERLAGAALRDPVLFRSEKDEAEAKK------KAEGKDDAVIKALNEAQAIVIPQESEEK  515

Query  475  TRPGANSPEMWSEAIKILKGEYAV-----------RAIKEHKMDQAIIFCRTKIDCDNLE  523
              P +   + +      L+    V           + I      + I+F  +    D   
Sbjct  516  FTPPSQLSQKYVVLPTKLRLVALVALLRSLISSVAKGISVSNGTKVIVFLSSTDAVDFHW  575

Query  524  QYFIQQGGGPDKKG----------------------------------------------  537
            +       G   +                                               
Sbjct  576  KLLGGVQMGQQGQQADGEKEEDEEEEGESVEERESDGESKAKKSKRKAKSKSTDDIVSLA  635

Query  538  ----HQFSCVCLHGDRKPHERKQNLERF--KKGDVRFLICTDVAARGIDIHGVPYVINVT  591
                   +   LHG      R  +L+ F         L  T VA+RG+D+  V  V+   
Sbjct  636  SPLFPNTTLHRLHGSLPLRTRLASLKAFATSSSQPSVLFATSVASRGLDLPLVRAVVQYD  695

Query  592  LPDE--KQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRG  635
            LP E     YVHR+GR  RA + G A + V+  +E     +    G
Sbjct  696  LPTEGGANEYVHRVGRTARAGKGGEAWAFVSPSEEGWVKWIEGKMG  741


 Score = 72.1 bits (175),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 43/120 (36%), Gaps = 20/120 (17%)

Query  2    AAFSEMGVMPEIAQAVE-EMDWLLPTDIQAESIPLILGG------------------GDV  42
              F  +G+   +   ++ +M    PT IQ   +P +L                     DV
Sbjct  200  TTFQGLGLNKLLINHLKGKMGVEKPTGIQRNCLPYMLSSPLNPDKKAGDEGPKEEPLRDV  259

Query  43   LMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            L+ A+TGSGKT ++ +P++Q +    +      +   T+    +   +            
Sbjct  260  LIQAQTGSGKTLSYLLPIVQTLLPLSRLSYID-RSIGTLAIILAPTRELAQQISKVLEQL  318


>sp|P0CQ95|DBP7_CRYNB ATP-dependent RNA helicase DBP7 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=DBP7 PE=3 SV=1
Length=948

 Score = 206 bits (525),  Expect = 7e-55, Method: Composition-based stats.
 Identities = 92/526 (17%), Positives = 166/526 (32%), Gaps = 116/526 (22%)

Query  219  PPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQV-  277
             P    +   P  +          G+E  K  P    +  ++   G  +         + 
Sbjct  223  KPTGIQRNCLPYMLSSPLNPDKKAGDEGPKEEPLRDVLIQAQTGSGKTLSYLLPIVQTLL  282

Query  278  --TQTKFLPN--APKALIVEPSRELAEQTLNNIKQFKKYIDN-----------------P  316
              ++  ++       A+I+ P+RELA+Q    ++Q                         
Sbjct  283  PLSRLSYIDRSIGTLAIILAPTRELAQQISKVLEQLLHMSFAASKEGSDDEDEDDRPFTR  342

Query  317  KLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGL  375
             L   L+ GG     + + L  GV I+V TPGRL D + +T     ++  FLVLDEAD L
Sbjct  343  WLVSGLLTGGSTRTHEKAKLRKGVPILVSTPGRLLDHLQNTMSFQCAKTMFLVLDEADRL  402

Query  376  LSQGYSDFINRMHNQIPQVTSD---------------------GKRLQVIVCSATLHSFD  414
            +  G+ + I  +   +     +                      +    ++CSAT+    
Sbjct  403  MDLGFEETIQGIIKALEGRRRNEINIEKEMDKEGGGTMRWPFWDRGRLNVLCSATV-DAK  461

Query  415  VKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDN  474
            V++L+   +  P     + +++              K D + + L ++        +++ 
Sbjct  462  VERLAGAALRDPVLFRSEKDEAEAKK------KAEGKDDAVIKALNEAQAIVIPQESEEK  515

Query  475  TRPGANSPEMWSEAIKILKGEYAV-----------RAIKEHKMDQAIIFCRTKIDCDNLE  523
              P +   + +      L+    V           + I      + I+F  +    D   
Sbjct  516  FTPPSQLSQKYVVLPTKLRLVALVALLRSLISSVAKGISVSNGTKVIVFLSSTDAVDFHW  575

Query  524  QYFIQQGGGPDKKG----------------------------------------------  537
            +       G   +                                               
Sbjct  576  KLLGGVQMGQQGQQADGEKEEDEEEEGESVEERESDGESKAKKSKRKAKSKSTDDIVSLA  635

Query  538  ----HQFSCVCLHGDRKPHERKQNLERF--KKGDVRFLICTDVAARGIDIHGVPYVINVT  591
                   +   LHG      R  +L+ F         L  T VA+RG+D+  V  V+   
Sbjct  636  SPLFPNTTLHRLHGSLPLRTRLASLKAFATSSSQPSVLFATSVASRGLDLPLVRAVVQYD  695

Query  592  LPDE--KQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRG  635
            LP E     YVHR+GR  RA + G A + V+  +E     +    G
Sbjct  696  LPTEGGANEYVHRVGRTARAGKGGEAWAFVSPSEEGWVKWIEGKMG  741


 Score = 72.1 bits (175),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 43/120 (36%), Gaps = 20/120 (17%)

Query  2    AAFSEMGVMPEIAQAVE-EMDWLLPTDIQAESIPLILGG------------------GDV  42
              F  +G+   +   ++ +M    PT IQ   +P +L                     DV
Sbjct  200  TTFQGLGLNKLLINHLKGKMGVEKPTGIQRNCLPYMLSSPLNPDKKAGDEGPKEEPLRDV  259

Query  43   LMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            L+ A+TGSGKT ++ +P++Q +    +      +   T+    +   +            
Sbjct  260  LIQAQTGSGKTLSYLLPIVQTLLPLSRLSYID-RSIGTLAIILAPTRELAQQISKVLEQL  318


>sp|Q9NUL7|DDX28_HUMAN Probable ATP-dependent RNA helicase DDX28 
OS=Homo sapiens OX=9606 GN=DDX28 PE=1 SV=2
Length=540

 Score = 200 bits (509),  Expect = 9e-55, Method: Composition-based stats.
 Identities = 97/443 (22%), Positives = 169/443 (38%), Gaps = 74/443 (17%)

Query  209  GKDLGLAFEIPPHMKNQA--LFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDG--  264
              DLGL   +   ++  A  +     ++++ +               G   +  A  G  
Sbjct  128  FADLGLEPRVLHALQEAAPEVVQPTTVQSSTIPSLL----------RGRHVVCAAETGSG  177

Query  265  ----YIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRE  320
                Y++        Q +       AP+ L++ PSRELA+Q     +   +   +  L  
Sbjct  178  KTLSYLLPLLQRLLGQPSLDSLPIPAPRGLVLVPSRELAQQVRAVAQPLGR---SLGLLV  234

Query  321  LLIIGGVAARDQLSVLENGV--DIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQ  378
              + GG   R     L      D++V TPG L   + +  ++L Q+ FLVLDEAD LL +
Sbjct  235  RDLEGGHGMRRIRLQLSRQPSADVLVATPGALWKALKSRLISLEQLSFLVLDEADTLLDE  294

Query  379  GYSDFINRMHN--QIPQVTSD-----GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL  431
             + + ++ +     I +  +D       + Q+++  AT     V +L  K+         
Sbjct  295  SFLELVDYILEKSHIAEGPADLEDPFNPKAQLVLVGATFP-EGVGQLLNKV---------  344

Query  432  KGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
                + PD V  +    + K   +   + ++ +R                 +  +E + I
Sbjct  345  ----ASPDAVTTI---TSSKLHCIMPHVKQTFLR-------------LKGADKVAELVHI  384

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
            LK  +  RA +       ++FC +    + L               H+   + L G    
Sbjct  385  LK--HRDRAERTGPSGTVLVFCNSSSTVNWLGYIL---------DDHKIQHLRLQGQMPA  433

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER  611
              R    + F+K     L+CTD+A+RG+D  GV  V+N   P   Q+Y+HR GRVGR   
Sbjct  434  LMRVGIFQSFQKSSRDILLCTDIASRGLDSTGVELVVNYDFPPTLQDYIHRAGRVGRVGS  493

Query  612  M--GLAISLVA-TEKEKVWYHVC  631
               G  IS V       +   + 
Sbjct  494  EVPGTVISFVTHPWDVSLVQKIE  516


 Score = 72.9 bits (177),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 31/156 (20%), Positives = 63/156 (40%), Gaps = 10/156 (6%)

Query  3    AFSEMGVMPEIAQAVEEM--DWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            +F+++G+ P +  A++E   + + PT +Q+ +IP +L G  V+ AAETGSGKT ++   +
Sbjct  127  SFADLGLEPRVLHALQEAAPEVVQPTTVQSSTIPSLLRGRHVVCAAETGSGKTLSYL--L  184

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH  120
              +     +   +                +                  L    R+++  H
Sbjct  185  PLLQRLLGQPSLDSLPIPAPRGLVLVPSRELAQQVRAVAQPLGRS---LGLLVRDLEGGH  241

Query  121  GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASL  156
            G R  +  +  +   +V     G     W  +++ L
Sbjct  242  GMRRIRLQLSRQPSADVLVATPGAL---WKALKSRL  274


>sp|Q1DWF4|DBP9_COCIM ATP-dependent RNA helicase DBP9 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=DBP9 PE=3 SV=2
Length=612

 Score = 201 bits (512),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 100/538 (19%), Positives = 182/538 (34%), Gaps = 55/538 (10%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K  + L L   +   +  Q      +++   +                 +A +K   G  
Sbjct  23   KTFETLHLDPRLLQALTKQKFTKPTLVQAEAIPLVLS--------GKDVLARAKTGSGKT  74

Query  267  VKSQHSGNAQVTQTK---FLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLI  323
                      + Q K       +  ALI+ P+RELAEQ  N +  F  +     +R   +
Sbjct  75   AAYLLPILQSILQKKIANPTQKSISALILVPTRELAEQVQNAVVSFSSFC-GKDIRSANL  133

Query  324  IGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDF  383
               V+   Q ++L +  DI++ TP R     ++  L+L+ +  LV+DEAD +LS GY   
Sbjct  134  TQKVSDAVQRAILADLPDIIISTPARAIINTNSSSLSLNDLTHLVIDEADLVLSYGYEQD  193

Query  384  INRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHH  443
            +  +   IP      + +Q ++ SATL S +V  L       P  + L+  +     +  
Sbjct  194  MQNLAKAIP------RGVQTLLMSATLTS-EVDALKGLFCRSPVILKLEEAEDEGAGIAQ  246

Query  444  VVVPVNPKTDRLWERLGKSHIRTD-----DVHAKDNTRPGANSPEMWSEAIKILKGEYAV  498
              V        L   +              V   D +       E +     +L  E  V
Sbjct  247  FAVKCAEDEKFLLTYVIFKLQLVKGKCIIFVGDIDRSYRLKLFLEQFGIKSCVLNSELPV  306

Query  499  RAIKE--HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQ  556
             +      + ++ +       D   +     ++G    ++ +  +     GD    E+  
Sbjct  307  NSRIHVVQEFNKGVYDIIIAADDQEVIGEIPKKGSKTPEQSNGEN-----GDEPEEEKGF  361

Query  557  NLERFKKGDVRFLICTDV------AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAE  610
            + E   +                  +RGID   V  V+N  LP   ++Y HRIGR GRA 
Sbjct  362  SDEDEVEPPPSKKRKKSTKEKDYGISRGIDFQDVACVLNFDLPTTAKSYTHRIGRTGRAG  421

Query  611  RMGLAISLVAT----------------EKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYN  654
            + G+A+SL+                    E V   +   + K     +        I   
Sbjct  422  KTGMALSLIVPSELYGRHKPTSFPTAKNDEAVLAKIIKRQAKLGREVKPYNFDTKQIDAF  481

Query  655  EMQLLSEIEEHLNCTISQVE-PDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPT  711
              ++   +       + +    +IK  +   +    + ++          H   L PT
Sbjct  482  RYRMTDALRAVTRVAVQEARTKEIKQELLNSEKLKRHFEENPE-ELRQLRHDGELRPT  538


 Score = 102 bits (254),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 50/103 (49%), Gaps = 3/103 (3%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
              F  + + P + QA+ +  +  PT +QAE+IPL+L G DVL  A+TGSGKT A+ +P++
Sbjct  23   KTFETLHLDPRLLQALTKQKFTKPTLVQAEAIPLVLSGKDVLARAKTGSGKTAAYLLPIL  82

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            Q + +        K   +          +      +   +F+ 
Sbjct  83   QSILQKKIANPTQK---SISALILVPTRELAEQVQNAVVSFSS  122


>sp|Q873H9|SPB4_NEUCR ATP-dependent rRNA helicase spb-4 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 
/ DSM 1257 / FGSC 987) OX=367110 GN=spb-4 PE=3 SV=1
Length=654

 Score = 202 bits (514),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 98/487 (20%), Positives = 191/487 (39%), Gaps = 78/487 (16%)

Query  213  GLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHS  272
             LA  I  ++ +        ++ + L+   G ++         V  +    G  +     
Sbjct  23   PLAQWILDYLSSMGFTQPTPVQKSCLELFRGNKD--------VVVEAVTGSGKTLAFLIP  74

Query  273  GNAQVTQTKF--LPNAPKALIVEPSRELAEQTLNNIKQFKKYID----------------  314
               ++ + +     N  + +I+ P+RELA Q  N +    K+ +                
Sbjct  75   VVEKLLRGEEPAKRNHVQGIIISPTRELATQIYNVLVSLVKFHEPSAEAISHAKSDEKRP  134

Query  315  ---NPKLRELLIIGGVAA--RDQLSVLENGVDIVVGTPGRLDDLVSTGKLNL--SQVRFL  367
                P +   L++GG      D  + L    ++++GTPGRL +L+S+  +    S    L
Sbjct  135  TATQPVVVPQLLVGGTTKAAEDLGTFLRLSPNLLIGTPGRLAELLSSAYVKAPASTFEVL  194

Query  368  VLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPT  427
            ++DEAD LL  G+++ +NR+   +P      K+ +  + SA+L S  V++L    + +P 
Sbjct  195  IMDEADRLLDMGFANELNRILGYLP------KQRRTGLFSASL-SDAVERLITVGLLYPH  247

Query  428  WVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSE  487
             + ++ +                             ++   +  +  T        + + 
Sbjct  248  KITVRVKS----------------------------LKDGGIIQERKTPMSLQMSYLVTP  279

Query  488  AIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHG  547
            A + +     +    E +  ++IIF  + +      +               FS   LHG
Sbjct  280  ASQKMPAIVQLLEKLEPRPQRSIIFFSSCMAVKYFSRIL------GAVLPAGFSVTSLHG  333

Query  548  DRKPHERKQNLERFKKGDVR-FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRV  606
              +P  R++N ERF        L+ TD+AARG+DI  V  VI    P + + ++HR GR 
Sbjct  334  KLEPKVREKNYERFVNTTSPMVLLTTDLAARGLDIPQVDLVIQHDPPTDTKVFIHRCGRA  393

Query  607  GRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHL  666
            GRA R GLA+ L+   +E+ +  +   R          E    ++  +E++ +S      
Sbjct  394  GRAGRRGLAVVLLQPGREEGYVQLLEVRQTPITPL---EKPAISVTPDEVERVSAAFRSQ  450

Query  667  NCTISQV  673
                 ++
Sbjct  451  ALADREI  457


 Score = 84.4 bits (207),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 42/103 (41%), Gaps = 6/103 (6%)

Query  2    AAFSEM--GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
             ++  +   +   I   +  M +  PT +Q   + L  G  DV++ A TGSGKT AF IP
Sbjct  15   RSWDALTPPLAQWILDYLSSMGFTQPTPVQKSCLELFRGNKDVVVEAVTGSGKTLAFLIP  74

Query  60   VIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            V++ +       +E  K         S   +     Y+   + 
Sbjct  75   VVEKLLRG----EEPAKRNHVQGIIISPTRELATQIYNVLVSL  113


>sp|Q19614|SLFL2_CAEEL Schlafen-like protein 2 OS=Caenorhabditis 
elegans OX=6239 GN=tofu-2 PE=1 SV=3
Length=433

 Score = 197 bits (500),  Expect = 2e-54, Method: Composition-based stats.
 Identities = 82/179 (46%), Positives = 111/179 (62%), Gaps = 3/179 (2%)

Query  88   LNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATKGLM-KGKHYYEVSCHDQGLCR  146
              + ++N  D+     I   GL C+S   K W G R T GL   GK+YYEV+   +GLCR
Sbjct  6    PRESKLNKQDQDLHLEIDETGLACKSEVKKRWLGARGTAGLYGNGKYYYEVTITSKGLCR  65

Query  147  VGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFS  206
            VGW+T+  SL++G     FG+GGTG KS +K+FD+YG  FT++D IGCYLD+D   + +S
Sbjct  66   VGWATLGGSLNIGKGLDSFGYGGTGMKSTHKKFDDYGLPFTLNDVIGCYLDLDSRTIWWS  125

Query  207  KNGKDLGLAFEIPPHMKNQA--LFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPD  263
            KNG+    AF I    KN    LFPA + +N+ L  NFG + FKFPP + F A+S AP+
Sbjct  126  KNGEQFPAAFSIDVKYKNSNTCLFPAVLCQNSSLSVNFGSQPFKFPPGNQFTAVSDAPN  184


>sp|A6R918|SPB4_AJECN ATP-dependent rRNA helicase SPB4 OS=Ajellomyces 
capsulatus (strain NAm1 / WU24) OX=2059318 GN=SPB4 PE=3 
SV=2
Length=676

 Score = 202 bits (514),  Expect = 2e-54, Method: Composition-based stats.
 Identities = 87/408 (21%), Positives = 160/408 (39%), Gaps = 78/408 (19%)

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNP----------------------  316
            ++    +   A+++ P+RELA Q  N +     +                          
Sbjct  87   ESPIKKHHIGAILISPTRELATQIYNVLLSLLAFHGPSAARLQRTENNSGEVDESNPASS  146

Query  317  ------KLRELLIIGGV--AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQ--VRF  366
                  K+   L++GG     +D  + L+   +++V TPGRL +L+S+   + SQ     
Sbjct  147  YPPSTLKIVPQLLLGGTTTPTQDLSAFLKQSPNVLVSTPGRLLELLSSPHAHCSQSSFEV  206

Query  367  LVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFP  426
            LVLDEAD LL  G+ + + ++  ++P      K+ +  + SA++ S  V ++    +  P
Sbjct  207  LVLDEADRLLDLGFKEDLQKILQRLP------KQRRTGLFSASV-SEAVDQIIRVGLRNP  259

Query  427  TWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWS  486
              + +K + +              +  R    L  +++ T   H                
Sbjct  260  VKIAVKVKGA------------GLEDKRTPASLQMTYLLTPPTHK---------------  292

Query  487  EAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLH  546
                 L     + +       ++I++  T    D  +         P     +F+ + LH
Sbjct  293  -----LPAVKYIVSTLSPTPQRSILYFSTCAAVDYYQHIL------PCILPDRFTTIPLH  341

Query  547  GDRKPHERKQNLERFKKG-DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR  605
            G   P  R++N  RF        L+ TDVAARG+DI  V  VI +  P + + ++HR GR
Sbjct  342  GKHPPQVRQKNFTRFVNSVTSSILLTTDVAARGLDIPAVDLVIQIDPPTDPKAFLHRCGR  401

Query  606  VGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWY  653
             GRA R GL++  +   +E+ +    + R       +       +  Y
Sbjct  402  AGRAGRRGLSVIFLHPGREEDYIAFLNVRKTPVTEFQSTSTSTPSQLY  449


 Score = 96.4 bits (238),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 45/103 (44%), Gaps = 6/103 (6%)

Query  2    AAFSEM--GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
             A+  +   +   I  A+  M +   T +QA +IPL +   DV++ A TGSGKT AF IP
Sbjct  19   RAWDALTPPLSEWILDAISAMGFSRMTPVQASTIPLFMAHKDVVVEAVTGSGKTLAFLIP  78

Query  60   VIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            V++ +       ++   G        S   +     Y+   + 
Sbjct  79   VVERLLRLESPIKKHHIGA----ILISPTRELATQIYNVLLSL  117


>sp|Q1E1R7|SPB4_COCIM ATP-dependent rRNA helicase SPB4 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=SPB4 PE=3 SV=2
Length=653

 Score = 201 bits (512),  Expect = 2e-54, Method: Composition-based stats.
 Identities = 99/451 (22%), Positives = 170/451 (38%), Gaps = 86/451 (19%)

Query  218  IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQV  277
            I   +          ++ + +    G ++         V  +    G  +        ++
Sbjct  28   ILDAVAAMGFTRMTPVQASTIPLFMGHKD--------VVVEAVTGSGKTMAFLIPVVEKL  79

Query  278  TQTK--FLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNP-------------------  316
             + +     +   A+IV P+RELAEQ    +     +                       
Sbjct  80   LRLEAPIKKHHVGAIIVSPTRELAEQIYKVLLSLLAFHAPSAAAIQPSTSDETADGETTL  139

Query  317  --------KLRELLIIGG--VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRF  366
                    K+   L++GG    A+D  + L+   ++ V TPGRL +L+S+  ++  Q  F
Sbjct  140  PSYPSSTLKVVPQLLLGGATTPAQDLSTFLKRSPNLFVSTPGRLLELLSSPHVHCPQTSF  199

Query  367  --LVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH  424
              LVLDEAD LL  G+ D + +   ++P      K+ +  + SAT+ S  V ++    + 
Sbjct  200  EVLVLDEADRLLDLGFKDDLQKTLARLP------KQRRTGLFSATV-SDAVDQIIRVGLR  252

Query  425  FPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEM  484
             P  + +K + +              +  R    L  +++ T   H     R   NS + 
Sbjct  253  NPVKIAVKVKGA-----------PGTEEKRTPASLQMTYLLTRPSHKIPAIRQILNSID-  300

Query  485  WSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC  544
                               +   + I++  T    D            P      F  + 
Sbjct  301  -------------------NTPQKTILYFSTCAAVDYWSHVL------PSLLPEIFVTLP  335

Query  545  LHGDRKPHERKQNLERFKKGDVR-FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI  603
            LHG   P+ R++N  RF        L+ TDVAARG+DI  V  VI    P + + Y+HR 
Sbjct  336  LHGKHPPNVRQKNFSRFTNSVSPSVLLTTDVAARGLDIPLVDLVIQFDPPTDPKAYLHRC  395

Query  604  GRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            GR GRA R GL++ L+   +E+ +      R
Sbjct  396  GRAGRAGRRGLSVILLCPGREEDYIPFLEVR  426


 Score = 94.4 bits (233),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 45/103 (44%), Gaps = 6/103 (6%)

Query  2    AAFSEM--GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
             ++  +   +   I  AV  M +   T +QA +IPL +G  DV++ A TGSGKT AF IP
Sbjct  15   RSWQALTPPLSEWILDAVAAMGFTRMTPVQASTIPLFMGHKDVVVEAVTGSGKTMAFLIP  74

Query  60   VIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            V++ +       ++   G        S   +     Y    + 
Sbjct  75   VVEKLLRLEAPIKKHHVGA----IIVSPTRELAEQIYKVLLSL  113


>sp|Q5B8F4|SPB4_EMENI ATP-dependent rRNA helicase spb4 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / 
NRRL 194 / M139) OX=227321 GN=spb4 PE=3 SV=1
Length=638

 Score = 199 bits (506),  Expect = 1e-53, Method: Composition-based stats.
 Identities = 89/402 (22%), Positives = 156/402 (39%), Gaps = 73/402 (18%)

Query  262  PDGYIVKSQHSGNAQVTQTK--FLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNP---  316
              G  +        ++ + +     +   A+IV P+RELA Q  N +     +       
Sbjct  61   GSGKTLSFLIPVVEKLLRLEEPIKKHHVGAIIVSPTRELASQIYNVLTSLLAFHPASAAV  120

Query  317  -------------------KLRELLIIGGV--AARDQLSVLENGVDIVVGTPGRLDDLVS  355
                               ++   L++GG    A D  + L+   +++V TPGRL +L+S
Sbjct  121  INTSETEDVPRPKHSSSVLRVVPQLLLGGSTSPAEDLSTFLKRSPNLLVATPGRLLELLS  180

Query  356  TGKLNL--SQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSF  413
            +  +    S    LVLDEAD LL  G+ + +  +  ++P      K+ +  + SA++ S 
Sbjct  181  SPHVYCPQSSFEMLVLDEADRLLDLGFKETLQNILRRLP------KQRRTGLFSASV-SE  233

Query  414  DVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKD  473
             V ++    +  P  V +K + +                 R    L  +++         
Sbjct  234  AVDQIVRVGLRNPVKVVVKVKGA-----------SGVDDKRTPASLQMTYLTQPPTGKFP  282

Query  474  NTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGP  533
              +   NS                     +    ++I F  T    D L          P
Sbjct  283  ALKHILNSV--------------------QPTPSKSIFFVSTCSGVDYLSVIL------P  316

Query  534  DKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR-FLICTDVAARGIDIHGVPYVINVTL  592
               G+ F  + LHG    + R++N  RF        L+ TDVA+RG+DI  V  V+ +  
Sbjct  317  LILGNDFQLIPLHGKHPANVRQKNFNRFVNAHNPAILLTTDVASRGLDIPSVDLVVQIDP  376

Query  593  PDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            P + + ++HR GR GRA R GL++ L+   +E+ +      R
Sbjct  377  PSDPKTFIHRCGRAGRAGRRGLSVVLLHPGREEDYVSFLEVR  418


 Score = 94.8 bits (234),  Expect = 7e-19, Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 4/95 (4%)

Query  8    GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYET  67
             +   +  AV  M +   T +QA +IPL +   DV++ A TGSGKT +F IPV++ +   
Sbjct  20   PLSEWVLDAVSSMGFTRMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLIPVVEKLLRL  79

Query  68   LKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
                +E  K         S   +     Y+  ++ 
Sbjct  80   ----EEPIKKHHVGAIIVSPTRELASQIYNVLTSL  110


>sp|Q54CD6|DDX5_DICDI Probable ATP-dependent RNA helicase ddx5 
OS=Dictyostelium discoideum OX=44689 GN=ddx5 PE=3 SV=1
Length=697

 Score = 199 bits (505),  Expect = 3e-53, Method: Composition-based stats.
 Identities = 82/396 (21%), Positives = 147/396 (37%), Gaps = 59/396 (15%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN-GVDIVV  344
                L++ P+REL  Q  +N     +      ++  +I GG++   Q+  LE     I++
Sbjct  291  GILVLVLVPTRELGLQVHSNTLIITQLFG---IKTSVIYGGISKNLQIEQLEKEKPQILI  347

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TPGRL +++  G ++LS V  LVLDEAD +LS+G    + ++  QI          Q I
Sbjct  348  STPGRLIEMIENGHVDLSSVTMLVLDEADKMLSKGLIPQLKQIRGQI------RPDSQNI  401

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SAT     +K++S+  +  P+     G   +P                       +HI
Sbjct  402  LFSATFPD-SLKEVSKDWIKDPSIRLRIGSSELPK---------------------LNHI  439

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
            + D      + +P A    +     K              +  + I+F     +   +  
Sbjct  440  QQDAQLIAHHKKPRALIKLLSEPQFK--------------EKKKTIVFFNKIKELKRISI  485

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
              ++                + G+     R++ + +F       L+ TD+  RGI I  +
Sbjct  486  MLLK---------SNIKHDTIFGNIDQELREKLINKFSSSRSTLLLSTDIIGRGIHIDDI  536

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAER--MGLAISLVATEKEKVWYHVCSSRGKGCYNTR  642
              +IN   P   + Y HR+GR GR+++     A S +      +             N  
Sbjct  537  FNIINYDFPRSLEQYCHRVGRAGRSDKVVNPKAFSFLTNSDSYLVEPFVQFLKDQHQNIS  596

Query  643  LKEDGGCTIWYNEMQL--LSEIEEHLNCTISQVEPD  676
            +     C   +       LS+ ++        VE D
Sbjct  597  IPFLKLCNENFGTKFEFTLSKRKQKKLAQKDDVEKD  632


 Score = 60.9 bits (146),  Expect = 3e-08, Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 8/89 (9%)

Query  18   EEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETL----KDQQE  73
            ++  +  PT  Q  + P IL G D++  +  GSGKT  +  P+I      +    K++  
Sbjct  222  KKTQFPTPTLFQQYAWPAILTGHDIIGTSLPGSGKTLGYLAPMIPHCLARVDRGGKNKIT  281

Query  74   GKKGK----TTIKTGASVLNKWQMNPYDR  98
            G+K        +        +  +  +  
Sbjct  282  GEKAPKQYTGILVLVLVPTRELGLQVHSN  310


>sp|Q5A4P9|DBP9_CANAL ATP-dependent RNA helicase DBP9 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP9 
PE=3 SV=2
Length=574

 Score = 195 bits (495),  Expect = 1e-52, Method: Composition-based stats.
 Identities = 99/579 (17%), Positives = 191/579 (33%), Gaps = 134/579 (23%)

Query  235  NAELKFNFGEEEFKFPPKDG----FVALSKAPDGYIVKSQHSGNAQVTQTKFLPN-----  285
            +  L     +  F  P         +AL +  D     S  SG         + N     
Sbjct  22   DPRLLQAIDQLGFSNPTLIQSSAIPLALEEKRDIIAKASTGSGKTAAYCIPIVNNLLTDD  81

Query  286  ---APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDI  342
                 K++I+ P+REL+ Q    +++   +  N K+  L +    + +   S+L N  +I
Sbjct  82   SSQGIKSIILVPTRELSNQVFQFVEKLLTFSTN-KINVLNLSSSYSDQVLNSLLVNKPEI  140

Query  343  VVGTPGRLDDLV--STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR  400
            ++ TP +L  ++  +   ++LS V+ L +DE D +LS GY D + ++ + +P      K 
Sbjct  141  IISTPAKLIQILEKNEKNIDLSTVKNLTIDEVDLVLSFGYLDDLKKLESYLP----VKKN  196

Query  401  LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLG  460
            LQ  + SAT++  D+  L ++    P  + L  + +  + +             L   + 
Sbjct  197  LQTFLMSATVND-DLDDLKQRYCTKPAILKLNEDSANQNNLVQYYAKTTEFDKFLLAYV-  254

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
                                               + +  IK     + I F        
Sbjct  255  ----------------------------------IFKLNLIK----GKTIAFVNNIDRGY  276

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA-----  575
             L+ +  Q G           C  L+ +   + R   +E F K     LI TD       
Sbjct  277  RLKLFLEQFG---------IRCCILNSELPINSRLHIVEEFNKNVYHLLIATDETNELNE  327

Query  576  --------------------------------------ARGIDIHGVPYVINVTLPDEKQ  597
                                                  +RG+D   V  V+N  LP   +
Sbjct  328  EQDDDEDGDEDTKDKGNAETKPKKSKKSKFKQDKEYGVSRGVDFRNVACVLNFDLPTSSK  387

Query  598  NYVHRIGRVGRAERMGLAISLVAT----------------EKEKVWYHVCSSRGKGCYNT  641
             Y+HRIGR  RA + G+A+S V                  + EKV   +   + K  +  
Sbjct  388  AYIHRIGRTARAGKAGMALSFVLPLSEFGKHKTASLASAKKDEKVLGRIVKQQSKNGFEI  447

Query  642  RLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVE-PDIKVPVDEFDGKVTYGQKRAAGGGS  700
            +  +     +     +            + +    ++K  +   +    + ++      S
Sbjct  448  KPYQFDMKQVEGFRYRADDAFRAVTQTAVREARVKELKNELINSEKLKRFFEENPQDLAS  507

Query  701  YKGHVDILAPTVQELAA------LEKEAQTSFLHLGYLP  733
             +   ++    +Q          L + A+    ++G++P
Sbjct  508  LRHDKELHPARIQSQLKNVPQYLLPESARQDVKNIGFVP  546


 Score = 96.0 bits (237),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 29/118 (25%), Positives = 53/118 (45%), Gaps = 5/118 (4%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLIL-GGGDVLMAAETGSGKTGAFSIPV  60
              +    + P + QA++++ +  PT IQ+ +IPL L    D++  A TGSGKT A+ IP+
Sbjct  14   TTWDSFNLDPRLLQAIDQLGFSNPTLIQSSAIPLALEEKRDIIAKASTGSGKTAAYCIPI  73

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKE  118
            +  +     D  +G K  + I      L+       ++   F+     +   S    +
Sbjct  74   VNNLLTD--DSSQGIK--SIILVPTRELSNQVFQFVEKLLTFSTNKINVLNLSSSYSD  127


>sp|A5DC85|DBP9_PICGU ATP-dependent RNA helicase DBP9 OS=Meyerozyma 
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP9 PE=3 
SV=2
Length=586

 Score = 194 bits (494),  Expect = 2e-52, Method: Composition-based stats.
 Identities = 92/584 (16%), Positives = 195/584 (33%), Gaps = 123/584 (21%)

Query  210  KDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKS  269
            ++  L   +   +         ++++  +  +  +       K   +A +    G     
Sbjct  38   ENFKLDPRLLQAVYQLGFEKPTLIQSNAIPLSLED-------KRDIIAKASTGSGKTGAY  90

Query  270  QHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAA  329
                   +       +  K++I+ P++ELA Q    I++   Y ++  + ++ +   V+ 
Sbjct  91   SIPIIQNILSEGLSEHNIKSVILVPTKELANQVTKFIEKLLVYCNS--ITQINLATNVSD  148

Query  330  RDQLSVLENGVDIVVGTPGRLDDLVSTGK--LNLSQVRFLVLDEADGLLSQGYSDFINRM  387
            +  +S+L    +I++ TP RL  ++      ++L+ V  L +DE D +LS GY + + ++
Sbjct  149  QVVVSLLSAKPEIIISTPSRLTTVLEKHASIVDLTTVTSLAIDEVDLMLSYGYMEDLQKL  208

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP  447
             + +P      + LQ  + SAT++  DV  L  +    P  + L   +   + +      
Sbjct  209  DDFLP----IKRNLQTYLMSATVND-DVNDLKARFCTKPAIIKLNDNEENQNRLVQFYAR  263

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
             +                                           K  +A    K H + 
Sbjct  264  TSE----------------------------------------FDKFLFAYVIFKLHLIK  283

Query  508  -QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
             + + F         L+ +  Q G           C  L+ +   + R   ++ F K   
Sbjct  284  GKTLAFVNNIDRGYRLKLFLEQFG---------VRCCILNSELPVNSRLHIVDEFNKNVY  334

Query  567  RFLICTDV----------------------------------AARGIDIHGVPYVINVTL  592
              LI +D                                    +RG+D   V  V+N  L
Sbjct  335  NLLIASDESTEVTEQEGEDDQEDSKPEKSKKKKGKKVDGEYGVSRGVDFRNVACVLNFDL  394

Query  593  PDEKQNYVHRIGRVGRAERMGLAISLVAT----------------EKEKVWYHVCSSRGK  636
            P   ++YVHR+GR  RA + G+A+S V                    EKV   +  S+ K
Sbjct  395  PTTSRSYVHRVGRTARAGKAGMALSFVVPVKEVGKHKTATNPGAKRDEKVLARIVKSQSK  454

Query  637  GCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVE-PDIKVPVDEFDGKVTYGQKRA  695
              +  +  +     +     +         +  I +    ++K  +   +    + ++  
Sbjct  455  NGFEIKPYQFDMTQVEGFRYRAEDAFRAVTSAAIREARIRELKNEIMNSEKLKRFFEENP  514

Query  696  AGGGSYKGHVDILAPTVQELAA------LEKEAQTSFLHLGYLP  733
                S +   ++    VQ          L + A+     +G++P
Sbjct  515  QDLASLRHDKELHPAKVQSQLKRVPDYLLPESARQDPKKIGFVP  558


 Score = 91.0 bits (224),  Expect = 9e-18, Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 1/65 (2%)

Query  2   AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILG-GGDVLMAAETGSGKTGAFSIPV  60
           A +    + P + QAV ++ +  PT IQ+ +IPL L    D++  A TGSGKTGA+SIP+
Sbjct  35  AKWENFKLDPRLLQAVYQLGFEKPTLIQSNAIPLSLEDKRDIIAKASTGSGKTGAYSIPI  94

Query  61  IQIVY  65
           IQ + 
Sbjct  95  IQNIL  99


>sp|Q6FST5|DBP6_CANGA ATP-dependent RNA helicase DBP6 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP6 PE=3 SV=1
Length=651

 Score = 196 bits (497),  Expect = 2e-52, Method: Composition-based stats.
 Identities = 84/383 (22%), Positives = 147/383 (38%), Gaps = 52/383 (14%)

Query  260  KAPDGYIVKSQHSGNAQVTQTKFLP-------NAPKALIVEPSRELAEQTLNNIKQFKKY  312
            +  D  +  S  SG         +        N  + LI+ P++ L  Q    + Q  + 
Sbjct  245  RIGDILVNASTGSGKTLAYSIPIIQTLSSRTVNKLRVLIILPTKLLINQVFQTMSQLAEG  304

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
                     L        +   +L+   DI + TPGRL D ++   ++L  ++FLVLDEA
Sbjct  305  TSLVITVSKL--ENSFNEEHKRLLKTEPDIFITTPGRLVDHLTNSSISLRNLKFLVLDEA  362

Query  373  DGLLSQGYSDFINRMHNQI--PQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVD  430
            D LL+Q + ++I  + ++    +       +  +V SATL + + +KL++  ++ PT   
Sbjct  363  DRLLNQSFQNWIPEVMSKFKSDKFDQMPGSIIKMVFSATLTT-NTEKLNDLQLYNPTL--  419

Query  431  LKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIK  490
                    D+V    +P   +  +L     KS  +   +        G            
Sbjct  420  -----FATDSVKLYNLPPTLQEYQLQIPSAKSVYKPLYLLKLLEQLSG------------  462

Query  491  ILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRK  550
                             + ++F R+      LE        G      Q     ++ +  
Sbjct  463  ----------------GKTLVFVRSNESSLKLEVLLKSLIKG-HMTTLQIVVHSINSNNS  505

Query  551  PHERKQNLERFKK----GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRV  606
              E ++ +  F K         LI TD+ +RGIDI  +  VIN  +P   Q YVHR GR 
Sbjct  506  KAENRRLVTDFTKESLPNQTNVLITTDLMSRGIDIENIANVINYDVPISSQQYVHRCGRT  565

Query  607  GRAERMGLAISLVATEKEKVWYH  629
             RA + G A +++  + E  ++ 
Sbjct  566  ARANKDGKAYNMLVGKGEAQFWK  588


 Score = 53.6 bits (127),  Expect = 5e-06, Method: Composition-based stats.
 Identities = 32/130 (25%), Positives = 52/130 (40%), Gaps = 28/130 (22%)

Query  2    AAFSEM--GVMPEIAQAVEEMDWLLPT-DIQAESIPLILG-----------------GGD  41
             +F E    + P++   +E+  +   T  IQ   +   L                  G D
Sbjct  191  KSFEEYSDDLTPKLLNNIEKY-FSKSTFPIQTAMLDQYLKLINFTLKTSKKNFTRRIG-D  248

Query  42   VLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKW--QMNPYDRG  99
            +L+ A TGSGKT A+SIP+I    +TL  +   K     I     ++N+    M+    G
Sbjct  249  ILVNASTGSGKTLAYSIPII----QTLSSRTVNKLRVLIILPTKLLINQVFQTMSQLAEG  304

Query  100  SAFAIGSDGL  109
            ++  I    L
Sbjct  305  TSLVITVSKL  314


>sp|Q9SW44|RH16_ARATH DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis 
thaliana OX=3702 GN=RH16 PE=2 SV=1
Length=626

 Score = 194 bits (492),  Expect = 7e-52, Method: Composition-based stats.
 Identities = 112/565 (20%), Positives = 194/565 (34%), Gaps = 120/565 (21%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            K+ ++LGL   +   +  + +    +++ + + +               VA +K   G  
Sbjct  46   KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYIL--------EGKDVVARAKTGSGKT  97

Query  267  VKSQHSGNAQVTQTKFLPN---APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLI  323
            +        ++     +     AP A I+ PSREL +Q    +    +     +L+ + +
Sbjct  98   LAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSLIELC-RVQLKAVQL  156

Query  324  IGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNL----SQVRFLVLDEADGLLSQG  379
               ++A D  + L    +I+V TP  +    + G L        +  LVLDEAD LLS G
Sbjct  157  TSSMSASDMRNALAGLPEILVSTPACIPKCFAAGVLEPTAVSESLSILVLDEADLLLSYG  216

Query  380  YSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL----KGED  435
            Y D +  + + IP      +R Q ++ SAT  S DV+KL + I+H P  + L      E+
Sbjct  217  YEDNLRSVTSIIP------RRCQCLLMSAT-TSSDVEKLKKLILHNPIVLTLTEDNDKEE  269

Query  436  SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGE  495
            +VP  V    +  + +                                            
Sbjct  270  AVPSNVQQFWISCSAQDK---------------------------------------LLH  290

Query  496  YAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERK  555
                   E    + +IF  T      L+ +  + G              L+G+   + R 
Sbjct  291  ILALLKLEVVQKKILIFINTIDMGFRLKLFLEKFG---------IKSAILNGELPQNSRL  341

Query  556  QNLERFKKGDVRFLICTDVAA-----------------------------------RGID  580
              LE+F  G   +LI TD  +                                   RGID
Sbjct  342  HILEQFNAGLFDYLIATDDNSQTKKQKEEAKGEANKENKKNNKRSKPKLDAEFGVVRGID  401

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYN  640
               V  VIN  +P     Y+HRIGR GRA   G ++SL++ ++ + +  + S        
Sbjct  402  FKKVHTVINFDMPQSVTGYIHRIGRTGRAYSSGSSVSLISPDEMEGFEDIKSFLAS----  457

Query  641  TRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDI-KVPVDEFDGKVTYGQKRAAGGG  699
                ++    I      L     E L      V   + K+ V E   +    +       
Sbjct  458  ---DKNKDIDIITPFPLLTENAVESLRYRAEDVAKSVTKIAVRESRAQDL--RNEIINSE  512

Query  700  SYKGHVDILAPTVQELAALEKEAQT  724
              K H +     +  L   +  ++T
Sbjct  513  KLKAHFEANPRDLDLLRHDKPLSKT  537


 Score = 103 bits (256),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 29/101 (29%), Positives = 47/101 (47%), Gaps = 3/101 (3%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +F E+G+   + +A+ +     PT IQ  +IP IL G DV+  A+TGSGKT A+ +P++
Sbjct  46   KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLL  105

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            Q ++         KK             +     Y   S+ 
Sbjct  106  QKLFS---ADSVSKKKLAPSAFILVPSRELCQQVYTEVSSL  143


>sp|P53734|DBP6_YEAST ATP-dependent RNA helicase DBP6 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP6 
PE=1 SV=1
Length=629

 Score = 194 bits (492),  Expect = 8e-52, Method: Composition-based stats.
 Identities = 94/514 (18%), Positives = 188/514 (37%), Gaps = 79/514 (15%)

Query  196  LDIDKGHVKFSKNGKDLGLAFEIPPHMKNQAL------FPACVLKNAELKFNFGEEEFKF  249
            ++++   ++F   G  L        +   +          A +L+N    F+      + 
Sbjct  144  MNLNTNSLQFKSTG-WLNTEKIYYDNSLIKPFSDYANELEAKLLQNICKNFSTNTFPIQS  202

Query  250  PPKDGFVAL-------------SKAPDGYIVKSQHSGNAQVTQTKFLP-------NAPKA  289
               D  + +              +  D  +  +  SG         +        N  + 
Sbjct  203  IILDSILPVLNFTLNVSKRNFTRRIGDILVNAATGSGKTLAYSIPIVQTLFKRQINRLRC  262

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN-GVDIVVGTPG  348
            +I+ P++ L  Q    + +  +      L   +     + +D+   L N   DI++ TPG
Sbjct  263  IIIVPTKLLINQVYTTLTKLTQ---GTSLIVSIAKLENSLKDEHKKLSNLEPDILITTPG  319

Query  349  RLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV--IVC  406
            RL D ++   +NL  ++FL++DEAD LL+Q +  +  ++ + +     D     V  ++ 
Sbjct  320  RLVDHLNMKSINLKNLKFLIIDEADRLLNQSFQGWCPKLMSHLKTDKLDTLPGNVIKMIF  379

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SATL + + +KL+   ++ P                 + +    K  +L  +L + +I  
Sbjct  380  SATLTT-NTEKLNGLNLYKPK----------------LFLKQTDKLYQLPNKLNEFNINI  422

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM--DQAIIFCRTKIDCDNLEQ  524
                                   K L   Y++     H     + +IF ++      L +
Sbjct  423  PTA----------------KSVYKPLILLYSICQFMAHSPIAAKILIFVKSNESSIRLSK  466

Query  525  YF-------IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK----KGDVRFLICTD  573
                      Q     + +    S   ++ +    E K+ +  F        +  LI TD
Sbjct  467  LLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAENKKIVANFSHHSESAGITILITTD  526

Query  574  VAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
            + +RGIDI+ +  VIN   P   Q YVHR+GR  RA  +G A +L+    E+ ++   + 
Sbjct  527  IMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARANELGSAYNLLVGRGERTFFDDLNK  586

Query  634  RGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLN  667
                   +    +   T+  ++ +L +   E L 
Sbjct  587  DLDRDGKSVQPLELDFTLLESDSELYTSSLESLK  620


 Score = 47.0 bits (110),  Expect = 6e-04, Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 28/125 (22%)

Query  1    MAAFSEMG--VMPEIAQAVEEMDWLLPT-DIQA---ESIPLIL------GGG-------D  41
            +  FS+    +  ++ Q + + ++   T  IQ+   +SI  +L                D
Sbjct  171  IKPFSDYANELEAKLLQNICK-NFSTNTFPIQSIILDSILPVLNFTLNVSKRNFTRRIGD  229

Query  42   VLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSA  101
            +L+ A TGSGKT A+SIP++Q +++        ++                   Y   + 
Sbjct  230  ILVNAATGSGKTLAYSIPIVQTLFK--------RQINRLRCIIIVPTKLLINQVYTTLTK  281

Query  102  FAIGS  106
               G+
Sbjct  282  LTQGT  286


>sp|A6ZSB3|DBP6_YEAS7 ATP-dependent RNA helicase DBP6 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=DBP6 PE=3 SV=1
Length=629

 Score = 193 bits (491),  Expect = 1e-51, Method: Composition-based stats.
 Identities = 94/514 (18%), Positives = 188/514 (37%), Gaps = 79/514 (15%)

Query  196  LDIDKGHVKFSKNGKDLGLAFEIPPHMKNQAL------FPACVLKNAELKFNFGEEEFKF  249
            ++++   ++F   G  L        +   +          A +L+N    F+      + 
Sbjct  144  MNLNTNSLQFKSTG-WLNTEKIYYDNSLIKPFSDYANELEAKLLQNICKNFSTNTFPIQS  202

Query  250  PPKDGFVAL-------------SKAPDGYIVKSQHSGNAQVTQTKFLP-------NAPKA  289
               D  + +              +  D  +  +  SG         +        N  + 
Sbjct  203  IILDSILPVLNFTLNVSKRNFTRRIGDILVNAATGSGKTLAYSIPIVQTLFKRQINRLRC  262

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN-GVDIVVGTPG  348
            +I+ P++ L  Q    + +  +      L   +     + +D+   L N   DI++ TPG
Sbjct  263  IIIVPTKLLINQVYTTLTKLTQ---GTSLIVSIAKLENSLKDEHKKLSNLEPDILITTPG  319

Query  349  RLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV--IVC  406
            RL D ++   +NL  ++FL++DEAD LL+Q +  +  ++ + +     D     V  ++ 
Sbjct  320  RLVDHLNMKSINLKNLKFLIIDEADRLLNQSFQGWCPKLMSHLKTDKLDTLPGNVIKMIF  379

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            SATL + + +KL+   ++ P                 + +    K  +L  +L + +I  
Sbjct  380  SATLTT-NTEKLNGLNLYKPK----------------LFLKQTDKLYQLPNKLNEFNINI  422

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM--DQAIIFCRTKIDCDNLEQ  524
                                   K L   Y++     H     + +IF ++      L +
Sbjct  423  PTA----------------KSIYKPLILLYSICQFMAHSPIAAKILIFVKSNESSIRLSK  466

Query  525  YF-------IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK----KGDVRFLICTD  573
                      Q     + +    S   ++ +    E K+ +  F        +  LI TD
Sbjct  467  LLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAENKKIVANFSHPSESAGITILITTD  526

Query  574  VAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
            + +RGIDI+ +  VIN   P   Q YVHR+GR  RA  +G A +L+    E+ ++   + 
Sbjct  527  IMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARANELGSAYNLLVGRGERTFFDDLNK  586

Query  634  RGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLN  667
                   +    +   T+  ++ +L +   E L 
Sbjct  587  DLDRDGKSVQPLELDFTLLESDSELYTSSLESLK  620


 Score = 47.0 bits (110),  Expect = 6e-04, Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 28/125 (22%)

Query  1    MAAFSEMG--VMPEIAQAVEEMDWLLPT-DIQA---ESIPLIL------GGG-------D  41
            +  FS+    +  ++ Q + + ++   T  IQ+   +SI  +L                D
Sbjct  171  IKPFSDYANELEAKLLQNICK-NFSTNTFPIQSIILDSILPVLNFTLNVSKRNFTRRIGD  229

Query  42   VLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSA  101
            +L+ A TGSGKT A+SIP++Q +++        ++                   Y   + 
Sbjct  230  ILVNAATGSGKTLAYSIPIVQTLFK--------RQINRLRCIIIVPTKLLINQVYTTLTK  281

Query  102  FAIGS  106
               G+
Sbjct  282  LTQGT  286


>sp|A3LV40|DBP9_PICST ATP-dependent RNA helicase DBP9 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=DBP9 PE=3 SV=1
Length=581

 Score = 191 bits (485),  Expect = 3e-51, Method: Composition-based stats.
 Identities = 100/556 (18%), Positives = 185/556 (33%), Gaps = 134/556 (24%)

Query  235  NAELKFNFGEEEFKFPPKDG----FVALSKAPDGYIVKSQHSGNAQVTQTKFLPN-----  285
            +A L     +  F+ P         +AL +  D     S  SG         + N     
Sbjct  23   DARLVQAIDQLGFEHPTLIQASAIPLALEEKRDIIAKASTGSGKTGAYVIPIIHNLLTDA  82

Query  286  -------APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN  338
                     K++I+ P+REL+ Q L  +++   Y +N ++  + +   ++ +   S+L N
Sbjct  83   EVESGNHHIKSIILVPTRELSNQVLQFVEKLLVYSNN-RINAINLSANLSDQVVNSLLMN  141

Query  339  GVDIVVGTPGRLDDLVSTGK----LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV  394
              +I++ TP +L  ++        ++LS VR L +DE D +LS GY + + ++   +P  
Sbjct  142  KPEIIISTPAKLIQVLEKNANKDLIDLSTVRNLTIDEVDLVLSYGYLEDLQKLETYLP--  199

Query  395  TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDR  454
                K LQ  + SAT++  D+  L  +    P  + L  E+S  + +             
Sbjct  200  --IKKNLQTFLMSATVND-DLNDLKTRFCSRPAILKLNDEESAQNKLIQYYARTTEFDKF  256

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
            L   +                                    + +  IK     + ++F  
Sbjct  257  LLAYV-----------------------------------IFKLNLIK----GKTLVFVN  277

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
                   L+ +  Q G           C  L+ +   + R   +E + K     LI TD 
Sbjct  278  NIDRGYRLKLFLEQFG---------IRCCILNSELPINSRLHIVEEYNKNVYNLLIATDE  328

Query  575  A------------------------------------------ARGIDIHGVPYVINVTL  592
                                                       +RG+D   V  V+N  L
Sbjct  329  TNDFTVEKDEQQQEESQDKKASSAKTKQSKKSKKQKKDTEYGVSRGVDFRNVACVLNFDL  388

Query  593  PDEKQNYVHRIGRVGRAERMGLAISLVAT----------------EKEKVWYHVCSSRGK  636
            P   + Y+HRIGR  RA + G+A+S V                  + EK+   +   + K
Sbjct  389  PTTSKAYIHRIGRTARAGKAGMALSFVLPIKEVGKHKTASLSTAKKDEKILRRIVKQQSK  448

Query  637  GCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVE-PDIKVPVDEFDGKVTYGQKRA  695
              +  +  +     +     +            I +    ++K  +   D    + ++  
Sbjct  449  NGFEIKPYQFDMKQVEGFRYRSEDAFRAVTQTAIREARIKELKNELINSDKLKRFFEENP  508

Query  696  AGGGSYKGHVDILAPT  711
                S + H   L PT
Sbjct  509  QDLASLR-HDKELHPT  523


 Score = 92.5 bits (228),  Expect = 4e-18, Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 1/106 (1%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLIL-GGGDVLMAAETGSGKTGAFSIPV  60
            +++    +   + QA++++ +  PT IQA +IPL L    D++  A TGSGKTGA+ IP+
Sbjct  15   SSWDSFHLDARLVQAIDQLGFEHPTLIQASAIPLALEEKRDIIAKASTGSGKTGAYVIPI  74

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS  106
            I  +    + +      K+ I      L+   +   ++   ++   
Sbjct  75   IHNLLTDAEVESGNHHIKSIILVPTRELSNQVLQFVEKLLVYSNNR  120


>sp|Q74ZC1|DBP9_EREGS ATP-dependent RNA helicase DBP9 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=DBP9 PE=3 SV=1
Length=595

 Score = 190 bits (483),  Expect = 9e-51, Method: Composition-based stats.
 Identities = 104/549 (19%), Positives = 193/549 (35%), Gaps = 55/549 (10%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
            SK      L   +   +K+       +++++ +     ++              K     
Sbjct  15   SKTFSSFQLDLRLQQSLKSSGFHHPTLIQSSAIPLALEQKR--DIIAKASTGSGKTLAYL  72

Query  266  IVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
            I   Q     + TQ          +++ P+RELA+Q    +++   Y     +R L I  
Sbjct  73   IPVVQTILEHKSTQGADRTTGTLGVVLVPTRELAQQVRVVLEKLVLYCS-KDIRLLNISA  131

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKL---NLSQVRFLVLDEADGLLSQGYSD  382
             V       +L    +I++ TP +L  ++    L   +L  +RFLV+DE D +L+ GY +
Sbjct  132  NVDDSVLGPLLAENPEIIISTPSQLVKILEGKHLQTISLRDLRFLVIDEVDLILTFGYQE  191

Query  383  FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED--SVPDT  440
             + ++   +P      K LQ  + SATL+  ++++L  K    P  + L  ++     + 
Sbjct  192  DLLKISQYLP----LKKNLQAFLMSATLN-EEIQELKTKFCRSPAILKLNDDEINKNKNK  246

Query  441  VHHVVVPVNPKTDRLWERLGKSHIRTD-----DVHAKDNTRPGANSPEMWSEAIKILKGE  495
            +    V V+     L   +              V+  D         E +     IL  E
Sbjct  247  LLQYYVKVSEFDKFLLCYVIFKLSLIKGKTIIFVNTIDRGYRLKLVLEQFGIRSCILNSE  306

Query  496  YAVRAIKEHKMD------QAIIFCRTKIDCDNLEQYFIQQG--GGPDKKGHQFSCVCLHG  547
              + + +    +      Q +I        +  ++  ++ G  G    +        +  
Sbjct  307  LPLNSRQHIVDEFNKNVYQLLIATDDNEYIEEEDEETVEAGEEGSEKLEEGGEKLEEITS  366

Query  548  DRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVG  607
                   KQ + + K  +         A+RG+D   V  V+N  LP   ++YVHRIGR  
Sbjct  367  KTSSTNGKQKIAK-KDKEYG-------ASRGVDFQNVSCVLNFDLPTTAKSYVHRIGRTA  418

Query  608  RAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLN  667
            RA + G AIS V               GK   +  +       I    +  + + +  L 
Sbjct  419  RAGKSGTAISFVVP---------LKEYGKHKPSMLVTAKKDEKI----LARVIKQQSKLG  465

Query  668  CTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKEAQTSFL  727
              I     D+K        ++   + R   G      V +    V+EL      ++    
Sbjct  466  FQIEPYNFDVK--------QIEGFRYRMEDGFRAVTQVAVREARVKELKQELLASEKLKR  517

Query  728  HLGYLPNQL  736
            H    P+ L
Sbjct  518  HFEENPHDL  526


 Score = 92.5 bits (228),  Expect = 4e-18, Method: Composition-based stats.
 Identities = 28/94 (30%), Positives = 44/94 (47%), Gaps = 2/94 (2%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLIL-GGGDVLMAAETGSGKTGAFSIPV  60
              FS   +   + Q+++   +  PT IQ+ +IPL L    D++  A TGSGKT A+ IPV
Sbjct  16   KTFSSFQLDLRLQQSLKSSGFHHPTLIQSSAIPLALEQKRDIIAKASTGSGKTLAYLIPV  75

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMN  94
            +Q + E  K  Q   +   T+        +    
Sbjct  76   VQTILEH-KSTQGADRTTGTLGVVLVPTRELAQQ  108


>sp|O74764|SPB4_SCHPO ATP-dependent rRNA helicase spb4 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=spb4 
PE=3 SV=1
Length=606

 Score = 189 bits (481),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 107/533 (20%), Positives = 197/533 (37%), Gaps = 82/533 (15%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             + + +   +   +  Q       ++   +      ++         V  +    G  + 
Sbjct  3    FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKD--------LVVEAVTGSGKTLA  54

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKY-----IDNPKLRELLI  323
                   +VT+         ALIV P+RELA Q  N  K+   Y         KL   + 
Sbjct  55   YLLPCFDKVTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMY  114

Query  324  IGG--VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYS  381
            IGG      D  S  E    +V+GTPGRL++++S   ++   +  L+LDEAD L+  G+ 
Sbjct  115  IGGKGTLTNDLASFREKNPSVVIGTPGRLNEMLS--HISSKHLEILILDEADTLIDMGFQ  172

Query  382  DFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV  441
              +  + +Q+P      K+ +  + SAT++      L    +     V +          
Sbjct  173  RTLQSIISQLP------KQRRTGLFSATMNDTVSSFLKIAGLRNSVRVSVT---------  217

Query  442  HHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI  501
                                          K +TR  ++          I K +  +  +
Sbjct  218  --------------------------VTSKKIDTRTPSSLAIQSLVIPPIYKVQCMIHLL  251

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
               + ++AI+F  +    +     F+            F  V LHG +    R +N E+F
Sbjct  252  CTIEYEKAIVFFSSCASVEYFNSLFL-------TYKLPFEIVALHGQQVQSNRSRNFEKF  304

Query  562  KKGDVR-FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            KK + +  L  TD+A+RG+DI  V +V+ +  P + +++ HR GR GRA R G+AI L+ 
Sbjct  305  KKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHRCGRAGRAGRAGVAIVLLN  364

Query  621  TEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVP  680
              +E+ +  +   R +    TR+                      L     ++   +   
Sbjct  365  DGREEEYEELL--RVRKVPITRIDTPIEALDL-----------SRLKVLTHELRKIVSKD  411

Query  681  VDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKEAQTSFLHLGYLP  733
             D +D  +   +   +   +Y  H       +++L   +     + LHL  +P
Sbjct  412  RDLYDKGL---RAFVSHVRAYTKHHASFIFRIKDLDLGQLATAYALLHLPKMP  461


 Score = 88.6 bits (218),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 6/100 (6%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            +F  + +   +  AV    +   T +QA +IPL L   D+++ A TGSGKT A+ +P   
Sbjct  2    SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD  61

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
             V  T +D  E   G   +    +   +     ++     
Sbjct  62   KV--TRRDTDETGLGALIV----APTRELATQIFNVTKEL  95


>sp|A4QTR1|DBP9_PYRO7 ATP-dependent RNA helicase DBP9 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=DBP9 PE=3 SV=1
Length=636

 Score = 190 bits (482),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 101/540 (19%), Positives = 187/540 (35%), Gaps = 50/540 (9%)

Query  211  DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            DLGL   +   +  Q+     ++++  +                 +A +K   G      
Sbjct  47   DLGLDPRLLQAVAQQSFQKPTLVQSKAIPLAL--------EGRDVLAKAKTGSGKTAAYV  98

Query  271  HSGNAQVTQTKFLPNA---PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV  327
                  V + K +        +LI+ P+REL  Q    +++F  +    +++ + +   V
Sbjct  99   LPILQAVLKRKQINPGATYISSLILVPTRELTVQVTKEVERFSAFCA-KEVQVVGLTDKV  157

Query  328  AARDQLSVLENG-VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINR  386
            +   Q S+L++   DIVV TP      V +G L+L ++  LVLDEAD +LS GY + + +
Sbjct  158  SDAVQRSLLQSSSPDIVVSTPSTAWRNVDSGALSLDKLTHLVLDEADLVLSYGYDEDLEK  217

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVV  446
            +   +P      K +Q ++ SATL   ++  L    +  P  +DL+  D+    +   +V
Sbjct  218  VARGLP------KGVQTVMTSATLTD-EIDTLKGIFLRDPVLLDLEEPDAEGSEITQYIV  270

Query  447  PVNPKTDRLWER-LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
                    L    L K  +    V             +++ E   I             +
Sbjct  271  KCGEDEKFLLAYILFKLQLIKGKVIIFVADVDRCYRLKLFFEQFGIRSCILNSELPVNSR  330

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
            +     F R      N+    I                   G  +    K++    +  D
Sbjct  331  ISVVEEFNR------NVYDIIIASDENEMMGDEDRPAPNGDGKEEAEVDKKHENEDEGQD  384

Query  566  VRFLICTDV----------------AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA  609
                                      +RGID   V  V+N  LP    +Y HRIGR GRA
Sbjct  385  GEASKAAPRPKKKRKMDRKRDKQYGVSRGIDFKNVAVVVNFDLPLSSTSYTHRIGRTGRA  444

Query  610  ERMGLAISLVATEK---EKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLL--SEIEE  664
             + G+ +S    ++   + +   + S+        R+ +         +       ++E 
Sbjct  445  GQAGMVLSFYVPKELFRKHIPTSIDSAENDEKVLARVIKQQKKLGREIKPYNFDRDQVES  504

Query  665  HLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKEAQT  724
                    +    K+ V E   +    ++        K H +     +Q L   + E +T
Sbjct  505  FRYRMNDALRAVTKIAVREARTREL--RQELLKSEKLKRHFEENPAELQHLVRHDGELRT  562


 Score = 100 bits (249),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 50/99 (51%), Gaps = 3/99 (3%)

Query  6    EMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVY  65
            ++G+ P + QAV +  +  PT +Q+++IPL L G DVL  A+TGSGKT A+ +P++Q V 
Sbjct  47   DLGLDPRLLQAVAQQSFQKPTLVQSKAIPLALEGRDVLAKAKTGSGKTAAYVLPILQAV-  105

Query  66   ETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
              LK +Q                 +  +        F+ 
Sbjct  106  --LKRKQINPGATYISSLILVPTRELTVQVTKEVERFSA  142


>sp|A1DGF2|MRH4_NEOFI ATP-dependent RNA helicase mrh4, mitochondrial 
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 
/ CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 
GN=mrh4 PE=3 SV=1
Length=631

 Score = 189 bits (480),  Expect = 4e-50, Method: Composition-based stats.
 Identities = 84/364 (23%), Positives = 146/364 (40%), Gaps = 37/364 (10%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL--ENGVDIVV  344
            P+A+I+ P+ EL  Q    +K     +   K R  +I   +  R   + L   +G+DI+V
Sbjct  271  PRAIILVPTSELVAQVGVKVKALSHTV---KYRSGMISSNLTPRRIKNTLFHPDGIDILV  327

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TP  L  +  T    LS+V  LVLDEAD LL + ++     + ++     +     ++I
Sbjct  328  ATPHLLASIAKTEPYVLSRVSHLVLDEADSLLDRSFAPTTTEIISK-----AAPSLRKLI  382

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            +CSAT+    +  L  K       +      ++P  V   VV +     R    L  + +
Sbjct  383  LCSATIP-RSLDNLLRKRYPDIKRLTTPNLHAIPRRVQLGVVDIEKDPYRGNRSLACADV  441

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTK-IDCDNL-  522
                  A D    G  +  +  +  KIL     V   +  + D+   F R+K ID  +L 
Sbjct  442  IWSIGKAGDAESEGPYASYVAPKTKKIL-----VFVNEREEADEVAQFLRSKGIDAQSLS  496

Query  523  --------EQYFIQQGGGPDKKGHQFSCVC---------LHGDRKPHERKQNLERFKKGD  565
                    E+   +    P         +          +  +      + +    +  +
Sbjct  497  RDSDARKQEEILAEFTEAPPPPTPDEILLAQKQRRHEDAIPFEMPQKTNQDSSR--RLAN  554

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
             + L+ TD+A+RGID   V  VI   +P    +++HR+GR+GR  + G  + LV  +  K
Sbjct  555  TKVLVTTDLASRGIDTLAVKTVILYHVPHTTIDFIHRLGRLGRMGKRGRGVVLVGKKDRK  614

Query  626  VWYH  629
                
Sbjct  615  DVVK  618


 Score = 57.4 bits (137),  Expect = 4e-07, Method: Composition-based stats.
 Identities = 23/86 (27%), Positives = 38/86 (44%), Gaps = 22/86 (26%)

Query  1    MAAFSEMGVMPEIAQAVEEMDW-----LLPTDIQAESIPLILGGGDV-------------  42
            + +F +  ++P +  ++          + PT IQ  +IP +L                  
Sbjct  140  ITSFDQFQLLPVVRNSISSQALPGLVDVTPTPIQRLAIPRLLEEPKTEKKPTKADDDEPQ  199

Query  43   ----LMAAETGSGKTGAFSIPVIQIV  64
                L+AAETGSGKT A+ +PV+  V
Sbjct  200  YDQYLLAAETGSGKTLAYLLPVVDAV  225


>sp|A4RMV8|ROK1_PYRO7 ATP-dependent RNA helicase ROK1 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=ROK1 PE=3 SV=1
Length=775

 Score = 191 bits (484),  Expect = 5e-50, Method: Composition-based stats.
 Identities = 95/459 (21%), Positives = 159/459 (35%), Gaps = 86/459 (19%)

Query  261  APDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRE  320
            A +G + +    G      +    +A +A++V P+RELA Q  N  ++         +R 
Sbjct  281  AINGVLKRRAEKGETGGDSSNDTKHALEAIVVAPTRELASQIANEGRKLA---MGTGVRV  337

Query  321  LLIIGGV-----------------------------AARDQLSVLENGV-----------  340
            +L+  G+                             +  D+                   
Sbjct  338  VLMRKGMRVAAEEDSTEKKSEDQEEDVFESEDEDSLSEDDEEREKSEKPSKKPNKAPITK  397

Query  341  -DIVVGTPGRLDDLVSTG----KLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
             DI+V TP  L + +S G    K  L +VR L+LDEAD LL Q + +    +        
Sbjct  398  ADILVTTPMLLLNFLSKGTSTTKKRLPRVRSLILDEADVLLDQLFREQTMGI-----WSA  452

Query  396  SDGKRLQVIVCSATLHS-------FDVKKLSEKIMHFP-TWVDLKGEDSVPDTVHHVVVP  447
                 L+V   SAT+ S        +++  ++     P   + +  +D+    + H +V 
Sbjct  453  CRNPNLRVSFWSATMASNIETHILDNLRAQADDAPAPPLIRLVVGLKDTAVPNISHRLVY  512

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
               ++ +L       H  +        T P   +P                         
Sbjct  513  TATESGKLLALRQLLHPASFSTTTSSTTTPEDETPLRPPF--------------------  552

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
              ++F +T      L +    +   P   G       LH       R   + RF+  DV 
Sbjct  553  --LVFVQTIERATALHEEL--KYDIPAAAGGASRVAVLHSSMPESARAAVIRRFRAADVW  608

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM-GLAISLVATEKEKV  626
             LI TDV ARG+D  GV  V+N  +P     YVHR GR GRA R  G+A++    E    
Sbjct  609  VLITTDVLARGVDFAGVNGVVNYDVPGSAAAYVHRAGRTGRAGRKGGIAVTFYTKEDIPF  668

Query  627  WYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEH  665
              +V +            E        + +  +S+ ++ 
Sbjct  669  VKNVANVIALSERQAGAGESATQKWLLDALPDVSKKDKK  707


 Score = 65.2 bits (157),  Expect = 2e-09, Method: Composition-based stats.
 Identities = 29/147 (20%), Positives = 54/147 (37%), Gaps = 42/147 (29%)

Query  3    AFSEMG----VMPEIAQAVEEMDWLLPTDIQAESIPLILG--------------------  38
            +FS++     + P +A  + +  + +PT++Q  ++PL+L                     
Sbjct  188  SFSQLRSAYRISPRLADNLAKGSYKVPTEVQLGALPLLLQPGFALSHEGDGVDDDGKGGD  247

Query  39   ------------GGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQE-----GKKGKTTI  81
                        G D L  A TGSGKT +F +P I  V +   ++ E         K  +
Sbjct  248  GEALAMLQGASAGVDFLAIAPTGSGKTLSFLLPAINGVLKRRAEKGETGGDSSNDTKHAL  307

Query  82   KTGAS-VLNKWQMNPYDRGSAFAIGSD  107
            +        +      + G   A+G+ 
Sbjct  308  EAIVVAPTRELASQIANEGRKLAMGTG  334


>sp|A5E572|DBP9_LODEL ATP-dependent RNA helicase DBP9 OS=Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP9 PE=3 SV=1
Length=606

 Score = 188 bits (477),  Expect = 6e-50, Method: Composition-based stats.
 Identities = 97/550 (18%), Positives = 193/550 (35%), Gaps = 71/550 (13%)

Query  244  EEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN--------APKALIVEPS  295
            E           +AL +  D     S  SG         + N          +++++ P+
Sbjct  41   ENPTLIQSSAIPLALEEKRDIIAKASTGSGKTAAYAIPIIQNIMVQGSQLGTQSVVLVPT  100

Query  296  RELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVS  355
            REL+ Q    ++Q  K+ +N K+  L +    + +   S+L N  +I++ TP +L   + 
Sbjct  101  RELSNQVYQFMEQLIKFSNN-KIGILNLSSNYSDQVLKSLLINKPEIIISTPSKLIQTLE  159

Query  356  ----TGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLH  411
                   ++LS V+ L +DE D +LS GY D + ++ + +P      K LQ  + SAT++
Sbjct  160  AHEGKDIIDLSTVKNLTIDEVDLILSFGYKDDLQKLESYLP----VKKNLQTFLMSATVN  215

Query  412  SFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNP-KTDRLWERLGKSHIRTDDVH  470
              D+ +L  K    P  + L  + S  + +              L   + K ++      
Sbjct  216  D-DLNELKAKFCTKPAILKLDDDQSNNNKLVQFYAKTTEFDKFLLSYVIFKLNLIKGKTI  274

Query  471  AKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTK----IDCDNLEQYF  526
               N        +++ E   I             ++     F +      I  D++    
Sbjct  275  VFVNNIDRGYRLKLFLEQFGIRCCILNSELPINSRLHIVEEFNKNVYHLLIATDDISVEK  334

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKP--------------------HERKQNLERFKKGDV  566
             +     + +            ++                      + ++N +   K D 
Sbjct  335  EEVDEVDEGEEEHEDAADADEKKQQNNNNNNNNHNNNNKEHKEVLKKNEKNKKHSSKKDK  394

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE----  622
             + +     +RG+D   V  V+N  LP   ++YVHR+GR  RA + G+A+S V  E    
Sbjct  395  EYGV-----SRGVDFRNVACVLNFDLPTTSKSYVHRVGRTARAGKSGMALSFVIPEKEVG  449

Query  623  ------------KEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTI  670
                         EKV   +   + K  +  +  +     +     +            I
Sbjct  450  KHKTASLRSAKKDEKVLNRIVKQQQKNGFEIKPYQFDMKQVEGFRYRADDAFRAVTQTAI  509

Query  671  SQVE-PDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQE------LAALEKEAQ  723
             +    ++K  +   +    + Q+      S +   ++    VQ          L + A+
Sbjct  510  REARVKELKNELINSEKLKRFFQENPRDLASLRHDKELHPARVQAHLKRTPQYLLPESAR  569

Query  724  TSFLHLGYLP  733
                +LG++P
Sbjct  570  LDVKNLGFIP  579


 Score = 98.3 bits (243),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 29/109 (27%), Positives = 56/109 (51%), Gaps = 5/109 (5%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLIL-GGGDVLMAAETGSGKTGAFSIPV  60
              +  + + P + QA++++ +  PT IQ+ +IPL L    D++  A TGSGKT A++IP+
Sbjct  20   TTWDSLNLDPRLLQAIDKLGFENPTLIQSSAIPLALEEKRDIIAKASTGSGKTAAYAIPI  79

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGL  109
            IQ +   ++  Q G   ++ +      L+       ++   F+    G+
Sbjct  80   IQNIM--VQGSQLG--TQSVVLVPTRELSNQVYQFMEQLIKFSNNKIGI  124


>sp|Q1E306|ROK1_COCIM ATP-dependent RNA helicase ROK1 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=ROK1 PE=3 SV=1
Length=730

 Score = 189 bits (481),  Expect = 8e-50, Method: Composition-based stats.
 Identities = 102/573 (18%), Positives = 193/573 (34%), Gaps = 98/573 (17%)

Query  204  KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKF----PPKDGFVALS  259
             F K      ++  +  ++ +Q       ++   L    G            +       
Sbjct  173  SFDKLRTRYHISRRLSDNIASQGYTVPTEVQLGSLPLLLGNAPAPNERTADDESLRSQSE  232

Query  260  KAPDGYIVKSQHSGNAQVTQTKFL------------PNAPKALIVEPSRELAEQTLNNIK  307
            + PD  +V    SG         +                 A++V P++EL  Q +N  +
Sbjct  233  REPDLLVVAPTGSGKTLSFMIPLINKIMKHHHDNPGLKEILAIVVAPTKELVAQIVNEGR  292

Query  308  QFKKYIDNPKLRELLIIGGVAARDQL----SVLEN-------------------------  338
            +         ++   +  G+   ++       LE                          
Sbjct  293  KL---TAGTGVKVSAVRKGMRIVEERGQETRSLEEENDGDDSTASSDEEIHSSEGEKSKD  349

Query  339  ----GVDIVVGTPGRLDDLVSTGKLN----LSQVRFLVLDEADGLLSQGYSDFINRMHNQ  390
                  DI+V TP  L + +S G       L  V+ LVLDEAD LL   + +    +   
Sbjct  350  IPLTKSDILVCTPLVLANALSDGGKRDVAPLPSVQKLVLDEADVLLDPLFREQTLSIWRA  409

Query  391  IPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNP  450
                     +L+V + SAT+ S ++++L++  +      +L G       +  VV   + 
Sbjct  410  C-----THPQLRVGLWSATMGS-NIEELTKSTIK--ERQELLGLKDESSLIRLVVGLKDT  461

Query  451  KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAI  510
                +  +L  +      +                   ++ L    +  +   H     +
Sbjct  462  AIPNISHKLVYAATEQGKLLG-----------------LRQLLHPTSTSSSTTHLRPPFL  504

Query  511  IFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLI  570
            IF +T      L    +           + +   LH +    +R   +  F+KG++  LI
Sbjct  505  IFTQTIARAIALHSELMYDIPAEAGGSSRIAV--LHSELSDSKRSDVMAGFRKGEIWVLI  562

Query  571  CTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM-GLAISLVATEKEKVWYH  629
             TD+ ARG+D  G+  V+N  +P+   +YVHR+GR GRA R  G+A++    E      +
Sbjct  563  TTDLLARGVDFRGINGVVNYDIPNSSASYVHRVGRTGRAGREGGVAVTFYTKEDIPYVKN  622

Query  630  VCSSRGKGCYNTRLKEDGGCTIWY---------NEMQLLSE--IEEHLNCTISQVEPDIK  678
            + +           +E      W          N+ + L +  ++     TIS      K
Sbjct  623  IANVISASENLRGTEEGERIPKWLLDALPSLSKNDKKDLKKYGVKARRPSTISDKTTSKK  682

Query  679  VPV---DEFDGKVTYGQKRAAGGGSYKGHVDIL  708
              +     FD ++   +K A  G   +   + L
Sbjct  683  TRISTKSGFDRRMDNKRKGAIKGSQRRKAREQL  715


 Score = 69.0 bits (167),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 26/132 (20%), Positives = 52/132 (39%), Gaps = 28/132 (21%)

Query  1    MAAFSEM----GVMPEIAQAVEEMDWLLPTDIQAESIPLILGG-----------------  39
            + +F ++     +   ++  +    + +PT++Q  S+PL+LG                  
Sbjct  171  LTSFDKLRTRYHISRRLSDNIASQGYTVPTEVQLGSLPLLLGNAPAPNERTADDESLRSQ  230

Query  40   ----GDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNP  95
                 D+L+ A TGSGKT +F IP+I  + +   D    K+    +    +   +     
Sbjct  231  SEREPDLLVVAPTGSGKTLSFMIPLINKIMKHHHDNPGLKE---ILAIVVAPTKELVAQI  287

Query  96   YDRGSAFAIGSD  107
             + G     G+ 
Sbjct  288  VNEGRKLTAGTG  299


>sp|A2QAB5|ROK1_ASPNC ATP-dependent RNA helicase rok1 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=rok1 PE=3 SV=2
Length=729

 Score = 189 bits (479),  Expect = 2e-49, Method: Composition-based stats.
 Identities = 99/558 (18%), Positives = 186/558 (33%), Gaps = 88/558 (16%)

Query  198  IDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVA  257
              +  V F +      ++  +  ++  Q       ++   L    G++     P+     
Sbjct  174  FPEPLVSFKQLRTKYNISRRLAENIAEQGFTVPTEVQLGSLPLLLGDQS---VPQKSGTE  230

Query  258  LSKAPDGYIVKSQHSGNAQVTQT------------KFLPNAPKALIVEPSRELAEQTLNN  305
             S  PD  +V    SG                   K       ++++ P++ELA Q +N 
Sbjct  231  KSTEPDLLVVAPTGSGKTLSFMIPVINKIVRHHHEKPEERGILSVVIAPTKELASQIVNE  290

Query  306  IKQFKKYIDNPKLRELLIIGGV------------------------AARDQLSVLEN---  338
             ++         ++  L+  G+                        +  D+ +  +N   
Sbjct  291  GRKLA---LGTGVKITLMKKGMRVVERDDEDDSKDVLDEDDSESLGSEDDEKATAKNSKG  347

Query  339  -----GVDIVVGTPGRLDDLVSTGKLN----LSQVRFLVLDEADGLLSQGYSDFINRMHN  389
                   DI+V TP  L + +S  +      L  VR +VLDEAD LL   + D    +  
Sbjct  348  KAPVTKSDILVTTPLLLVNALSANRTKPLATLPLVRNVVLDEADVLLDPLFRDQTLDIWR  407

Query  390  QIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN  449
                 +     L+  + SAT+ S +V+ L++  +      D   E      +  VV   +
Sbjct  408  -----SCTHPELRASLWSATMGS-NVEDLAKSTIK--ERKDTLSETKSYPLLRLVVGLKD  459

Query  450  PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA  509
                 +  +L  +      +         A +                            
Sbjct  460  SAIPNIKHKLVYAATEQGKLLGLRQLLHPAAASSTDIRLRPPF-----------------  502

Query  510  IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL  569
            +IF +T      L          P + G       LH +    +R + +++F+KG++  L
Sbjct  503  LIFTQTIPRAVALHSELRYD--IPPEAGGSSRIAVLHSELSDGQRSEIMKQFRKGEIWIL  560

Query  570  ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM-GLAISLVATEKEKVWY  628
            + TD+ ARG+D  G+  V+N  +P+    YVHR+GR GRA R  G+A++    E      
Sbjct  561  VTTDLLARGVDFRGINGVVNYDIPNSAAVYVHRVGRTGRAGREGGIAVTYYTKEDIPYVK  620

Query  629  HVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKV  688
             + +            E+     W      L +    L+    +      V   +  G  
Sbjct  621  SIANVIDVSEKLRGTDEEKSVQKW------LLDALPDLSKKKKEELKKHGVKARQTQGTK  674

Query  689  TYGQKRAAGGGSYKGHVD  706
               + R +    Y+   +
Sbjct  675  DDKKTRISTKSGYERRQE  692


 Score = 76.3 bits (186),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 29/123 (24%), Positives = 55/123 (45%), Gaps = 21/123 (17%)

Query  3    AFSEM----GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGG--------------DVLM  44
            +F ++     +   +A+ + E  + +PT++Q  S+PL+LG                D+L+
Sbjct  180  SFKQLRTKYNISRRLAENIAEQGFTVPTEVQLGSLPLLLGDQSVPQKSGTEKSTEPDLLV  239

Query  45   AAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
             A TGSGKT +F IPVI  +     ++ E +     +    +   +      + G   A+
Sbjct  240  VAPTGSGKTLSFMIPVINKIVRHHHEKPEER---GILSVVIAPTKELASQIVNEGRKLAL  296

Query  105  GSD  107
            G+ 
Sbjct  297  GTG  299


>sp|Q4X1X0|MRH4_ASPFU ATP-dependent RNA helicase mrh4, mitochondrial 
OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 
101355 / FGSC A1100 / Af293) OX=330879 GN=mrh4 PE=3 SV=1
Length=631

 Score = 187 bits (474),  Expect = 3e-49, Method: Composition-based stats.
 Identities = 84/364 (23%), Positives = 145/364 (40%), Gaps = 37/364 (10%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL--ENGVDIVV  344
            P+A+I+ P+ EL  Q    +K     +   K R  +I      R   + L   +G+DI+V
Sbjct  271  PRAIILVPTSELVAQVGVKVKALSHTV---KYRSGMISSNFTPRRIKNTLFHPDGIDILV  327

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TP  L  +  T    LS+V  LVLDEAD LL + ++     + ++     +     ++I
Sbjct  328  ATPHLLASIAKTEPYVLSRVSHLVLDEADSLLDRSFAPTTTEIISK-----AAPSLRKLI  382

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            +CSAT+    +  L  K       +      ++P  V   VV +     R    L  + +
Sbjct  383  LCSATIP-RSLDNLLRKRYPDIKRLTTPNLHAIPRRVQLGVVDIEKDPYRGNRSLACADV  441

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTK-IDCDNL-  522
                  A D    G  +  +  +  KIL     V   +  + D+   F R+K ID  +L 
Sbjct  442  IWSIGKAGDAESEGPYASYVAPKTKKIL-----VFVNEREEADEVAQFLRSKGIDAQSLS  496

Query  523  --------EQYFIQQGGGPDKKGHQFSCVC---------LHGDRKPHERKQNLERFKKGD  565
                    E+   +    P         +          +  +      + +    +  +
Sbjct  497  RDSDARKQEEILAEFTEAPPPPSPDEILLAQKKRRYEDAIPFEMPEKANQGSSR--RLAN  554

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
             + L+ TD+A+RGID   V  VI   +P    +++HR+GR+GR  + G  + LV  +  K
Sbjct  555  TKVLVTTDLASRGIDTLAVKTVILYHVPHTTIDFIHRLGRLGRMGKRGRGVVLVGKKDRK  614

Query  626  VWYH  629
                
Sbjct  615  DVVK  618


 Score = 57.4 bits (137),  Expect = 3e-07, Method: Composition-based stats.
 Identities = 23/86 (27%), Positives = 38/86 (44%), Gaps = 22/86 (26%)

Query  1    MAAFSEMGVMPEIAQAVEEMDW-----LLPTDIQAESIPLILGGGDV-------------  42
            + +F +  ++P +  ++          + PT IQ  +IP +L                  
Sbjct  140  ITSFDQFQLLPVVRNSISSQALPGLVDVTPTPIQRLAIPRLLEEPKTEKKPTKADDDEPR  199

Query  43   ----LMAAETGSGKTGAFSIPVIQIV  64
                L+AAETGSGKT A+ +PV+  V
Sbjct  200  YDQYLLAAETGSGKTLAYLLPVVDAV  225


>sp|A1CSR1|MRH4_ASPCL ATP-dependent RNA helicase mrh4, mitochondrial 
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 
/ DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 
GN=mrh4 PE=3 SV=2
Length=632

 Score = 184 bits (468),  Expect = 2e-48, Method: Composition-based stats.
 Identities = 81/385 (21%), Positives = 141/385 (37%), Gaps = 78/385 (20%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL--ENGVDIVV  344
            P+A+I+ P+ EL  Q    +K     +   K R  +I   +  R   + L   +G+DI+V
Sbjct  271  PRAIILVPTSELVAQVGVKVKALSHTV---KYRSGMISSNLTPRRIKNTLFHPDGIDILV  327

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TP  L  +  T    LS+V  LVLDEAD LL + ++     + +++           +I
Sbjct  328  ATPHLLASIAKTEPYLLSRVSHLVLDEADSLLDRSFAPTTTEIISKVAPSLQK-----LI  382

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            +CSAT+    +  L  K       +      ++P  V   VV +     R    L  + +
Sbjct  383  LCSATIP-RSLDNLLRKRYPDIKRLTTPNLHAIPRRVQLGVVDIEKDPYRGNRSLACADV  441

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                  A D+   G  S  +                  E K  + ++F   + + D + Q
Sbjct  442  IWSIGKAGDSEVSGPYSSFL------------------EPKTKKILVFVNEREEADEVAQ  483

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG--------------------  564
            +   +G              L  D    ++++ L  F +                     
Sbjct  484  FLQSKG---------IDAHSLSRDSSARKQEEILAEFTEAPPPPSPDEIMLAQKQRRHED  534

Query  565  --------------------DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
                                + + L+ TD+ +RGID   V  VI   +P    +++HR+G
Sbjct  535  PIPFEMPKRTNSGGSTRRLPNTKVLVTTDLTSRGIDTLAVKTVILYHVPHTTIDFIHRLG  594

Query  605  RVGRAERMGLAISLVATEKEKVWYH  629
            R+GR  + G  + LV  +  K    
Sbjct  595  RLGRMGKRGRGVVLVGKKDRKDVVK  619


 Score = 57.1 bits (136),  Expect = 4e-07, Method: Composition-based stats.
 Identities = 23/86 (27%), Positives = 38/86 (44%), Gaps = 22/86 (26%)

Query  1    MAAFSEMGVMPEIAQAVEEMDW-----LLPTDIQAESIPLILGGG---------------  40
            + +F +  ++P +  ++          + PT IQ  +IP +L                  
Sbjct  140  ITSFDQFPLLPVVRNSIVSQALPGLMEVTPTPIQRLAIPKLLEESKPDKKPVKTDDDEPH  199

Query  41   --DVLMAAETGSGKTGAFSIPVIQIV  64
                L+AAETGSGKT A+ +PV+  V
Sbjct  200  YDQFLLAAETGSGKTLAYLLPVVDAV  225


>sp|Q0C9E8|MRH4_ASPTN ATP-dependent RNA helicase mrh4, mitochondrial 
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) 
OX=341663 GN=mrh4 PE=3 SV=2
Length=631

 Score = 183 bits (465),  Expect = 3e-48, Method: Composition-based stats.
 Identities = 96/366 (26%), Positives = 148/366 (40%), Gaps = 43/366 (12%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN--GVDIVV  344
            P+ +I+ P+ EL  Q    +K     I   K R  +I   +  R   + L N  G+DI+V
Sbjct  273  PRVIILVPTAELVAQVGAKVKTLSHTI---KYRSGMISSNLTPRRIKNTLFNPDGIDILV  329

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TP  L  +  T    LS+V  LVLDEAD LL + +      +  +     + G   ++I
Sbjct  330  TTPHLLASIAKTEPYVLSRVSHLVLDEADSLLDRSFQPITTEIIEK-----TSGSLQKLI  384

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            +CSAT+       L +K       +      ++P  V   VV +     R    L  + +
Sbjct  385  LCSATIPRSLDNFLRKKY-PDIQRLTTPNLHAIPRRVQLGVVDIQKDPYRGNRNLACADV  443

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTK-IDCDNLE  523
                  A D+   G  +        KIL     V   +  + D+   F R+K ID  +L 
Sbjct  444  IWSIGKAGDSEPAGPFASYQGPSVKKIL-----VFVNEREEADEVAQFLRSKGIDAHSLS  498

Query  524  Q------------YFIQQGGGPD--------KKGHQFSCVCLHGDRKPHERKQNLERFKK  563
            +             F + G  P         KKG Q   +      KPHE  +       
Sbjct  499  RDSSARRQEEILAEFTEAGAPPSSEEIMLAQKKGRQDDAIPFEAPSKPHEPHKLP-----  553

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
             + + L+ TD+A+RGID   V  VI   +P    +++HR+GR+GR  + G  I LV  + 
Sbjct  554  -NTKVLVTTDIASRGIDTLAVKTVILYHVPHTTIDFIHRLGRLGRMNKRGRGIVLVGKKD  612

Query  624  EKVWYH  629
             K    
Sbjct  613  RKDVVK  618


 Score = 62.1 bits (149),  Expect = 1e-08, Method: Composition-based stats.
 Identities = 24/90 (27%), Positives = 41/90 (46%), Gaps = 22/90 (24%)

Query  1    MAAFSEMGVMPEIAQAVEE-----MDWLLPTDIQAESIPLILG--GGD------------  41
            + +F +  ++P +  ++       +  + PT IQ  +IP +L     D            
Sbjct  142  ITSFDQFPLLPVVRHSIFSQALPGLHDVTPTPIQRVAIPRLLDDTNKDKKPKKRAEGEPE  201

Query  42   ---VLMAAETGSGKTGAFSIPVIQIVYETL  68
                L+AAETGSGKT A+ IP++  V +  
Sbjct  202  YDQYLLAAETGSGKTLAYLIPLVNTVKQQE  231


>sp|Q5AZA6|DBP9_EMENI ATP-dependent RNA helicase dbp9 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=dbp9 PE=3 SV=1
Length=610

 Score = 183 bits (463),  Expect = 5e-48, Method: Composition-based stats.
 Identities = 86/411 (21%), Positives = 144/411 (35%), Gaps = 34/411 (8%)

Query  206  SKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY  265
             ++ + L L   +   +  +       ++   +                 +A +K   G 
Sbjct  27   DEDFETLNLDPRLRQALVKEKFSKPTPVQAKAIPLAL--------EGKDILARAKTGSGK  78

Query  266  IVKSQHSGNAQVTQTKFLPN---APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
                       + Q K +     A   LI+ P+RELAEQ    I  F  +     +R + 
Sbjct  79   TAAYVLPILQTILQKKAIDPSMKATTGLILVPTRELAEQVQKVITTFAAFC-GKDVRSVN  137

Query  323  IIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD  382
            +   V+   Q ++L +  DIVV TP R+   + T  L+L  +  LV+DEAD +LS GY D
Sbjct  138  LTQKVSDAVQKAMLADYPDIVVSTPARVIANLGTSALSLENLTHLVIDEADLVLSYGYED  197

Query  383  FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH  442
             IN +   IP      + +Q  + SATL + +V  L       P  + L+ +D     V 
Sbjct  198  DINALSKAIP------RGVQTFLMSATL-TAEVDTLKGLFCRSPVILKLEDKDDHGAGVS  250

Query  443  HVVVPVNPKTDRLWERLGKSHIRTD-----DVHAKDNTRPGANSPEMWSEAIKILKGEYA  497
              VV        L   +              V   D +       E +     IL  E  
Sbjct  251  QFVVKCAEDEKFLLTYVIFKLQLIKGKVIIFVGDIDRSYRLKLFLEQFGIKSCILNSELP  310

Query  498  VRAIKE--HKMDQA---IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPH  552
            V +      + ++    II    + +   + +    +                   +   
Sbjct  311  VNSRIHVVEEFNKGVYDIIIAADEQEVLGVSKSRKSKDATEGDDELLSDEDEETSAKAAS  370

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI  603
             R     +    +  + I     +RGID   V  V+N  LP   ++Y HRI
Sbjct  371  TRTDKRRKLSSKEKDYGI-----SRGIDFQNVACVLNFDLPTSSKSYTHRI  416


 Score = 102 bits (254),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 30/101 (30%), Positives = 49/101 (49%), Gaps = 3/101 (3%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F  + + P + QA+ +  +  PT +QA++IPL L G D+L  A+TGSGKT A+ +P++Q 
Sbjct  30   FETLNLDPRLRQALVKEKFSKPTPVQAKAIPLALEGKDILARAKTGSGKTAAYVLPILQT  89

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            + +  K      K   T         +         + FA 
Sbjct  90   ILQK-KAIDPSMK--ATTGLILVPTRELAEQVQKVITTFAA  127


>sp|Q7SBR1|MRH4_NEUCR ATP-dependent RNA helicase mrh4, mitochondrial 
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A 
/ CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=drh-15 PE=3 
SV=1
Length=625

 Score = 183 bits (463),  Expect = 6e-48, Method: Composition-based stats.
 Identities = 90/464 (19%), Positives = 167/464 (36%), Gaps = 87/464 (19%)

Query  209  GKDLGLAFEIPPHMKNQ--ALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            G+ +G     P     +   L  A       L +                 ++   +   
Sbjct  185  GQPMGRKPRRPKSDNGREEFLLAAETGSGKTLAYLVPAVNAIKKGDADDELVASYNERLA  244

Query  267  VKSQHSGNAQVTQ--TKFLPN----APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRE  320
             + +  G A V++   KF P+     P+ +++ P+ EL +Q  +  K+   Y    K + 
Sbjct  245  AEKERRGGAPVSEWIEKFEPHPNTARPRVVVLVPTAELVDQVTSVAKKLAHY---TKFKV  301

Query  321  LLIIGGVAARDQLSVLEN--GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQ  378
              +   ++       L +  GVD++V TP  L  +  +    LS+V  LV+DEAD LL +
Sbjct  302  RPLSASISPLRNQRNLYSPIGVDMIVSTPHLLATIAKSDPNVLSRVSHLVIDEADSLLDR  361

Query  379  GYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVP  438
             +S     + +      +     Q+I+CSAT+    +    E+   +   +      ++P
Sbjct  362  SFSGDTTSIVD-----RAMPSLKQLILCSATIPRR-LDTYMEEQFPYINRITTPNLHAIP  415

Query  439  DTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAV  498
              V   V+ V+    R                   N +  A +  +WS   +  K E   
Sbjct  416  RRVQLGVIDVSKDPYR-------------------NNKMLACADAIWSIGKEAAKHEGPK  456

Query  499  RAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNL  558
              I    + + ++F   +     +  Y + +G            + LH D + H + + L
Sbjct  457  SEID---VKRIMVFVNERETTQQVADYLVSKG---------IDAIALHRDTEEHRKSEML  504

Query  559  ERFKKGD-------------------------------------VRFLICTDVAARGIDI  581
              F   +                                      + ++ TD+A+RGID 
Sbjct  505  ASFTSNEPMKISRPADDDVAAAAAEGGKAGGAVSSSPTRRHLPNTKVIVATDLASRGIDT  564

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
              V YV+   +P    +++HR+GR GR  R G  I LV  +  +
Sbjct  565  LAVRYVVLYDVPHTTIDFIHRLGRAGRMNRRGRGIVLVGKDDRR  608


 Score = 63.2 bits (152),  Expect = 5e-09, Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 51/116 (44%), Gaps = 25/116 (22%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWL-----LPTDIQAESIPLIL--------------GGGD  41
            + AF +  ++P + +A+ +          PT +Q  +IP +L               G +
Sbjct  143  IQAFDQFDLLPVVKEAIAQEALKGMTEIKPTPVQRLAIPALLGQPMGRKPRRPKSDNGRE  202

Query  42   -VLMAAETGSGKTGAFSIPVIQIVYETLKDQQ-----EGKKGKTTIKTGASVLNKW  91
              L+AAETGSGKT A+ +P +  + +   D +       +      + G + +++W
Sbjct  203  EFLLAAETGSGKTLAYLVPAVNAIKKGDADDELVASYNERLAAEKERRGGAPVSEW  258


>sp|A2QZ71|MRH4_ASPNC ATP-dependent RNA helicase mrh4, mitochondrial 
OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 
/ FGSC A1513) OX=425011 GN=mrh4 PE=3 SV=2
Length=633

 Score = 182 bits (462),  Expect = 9e-48, Method: Composition-based stats.
 Identities = 83/385 (22%), Positives = 137/385 (36%), Gaps = 78/385 (20%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN--GVDIVV  344
            P+ +I+ P+ EL  Q    +K     +   K R  +I   +  R   S+L N  G+DI+V
Sbjct  272  PRVIILVPTSELVAQVGAKVKALSHTV---KYRSGMISSNLTPRRIKSILFNPSGIDILV  328

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TP  L  +  T    LS+V  LVLDEAD L+ + +      +  +     S     ++I
Sbjct  329  ATPHLLASIAKTDPYVLSRVSHLVLDEADSLMDRSFLPTTTEIIEK-----SASSLHKLI  383

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            +CSAT+    +  L  K       +      ++P  V   VV +     R    L  + +
Sbjct  384  LCSATIP-RSLDNLLRKRYPDIRRLTTPNLHAIPRRVQLGVVDIQRDPYRGNRSLACADV  442

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                  A D         +                     K+ + ++F   + + D + Q
Sbjct  443  IWSIGKAGDTEPTHPFLAQAGP------------------KVKKILVFVNEREEADEVAQ  484

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG--------------------  564
            +   +G                  RK  E    LE F +                     
Sbjct  485  FLRSKGIDAQSFSRD------SSSRKQEE---LLEEFTESPIPPTAEEIMLAKNKRRQDN  535

Query  565  --------------------DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
                                + + L+ TD+A+RGID   V  VI   +P    +++HR+G
Sbjct  536  SIPFVFPEQQNKPGAERGLPNTKVLVTTDIASRGIDTIAVKTVILYHVPHNTIDFIHRLG  595

Query  605  RVGRAERMGLAISLVATEKEKVWYH  629
            R+GR  + G A+ LV  +  K    
Sbjct  596  RLGRMGKRGRAVVLVGKKDRKDVVK  620


 Score = 67.5 bits (163),  Expect = 3e-10, Method: Composition-based stats.
 Identities = 29/98 (30%), Positives = 48/98 (49%), Gaps = 22/98 (22%)

Query  1    MAAFSEMGVMPEIA-----QAVEEMDWLLPTDIQAESIPLILG-------GGDV------  42
            +++F +  ++P +      QA+     ++PT IQ  +IP +L          DV      
Sbjct  141  VSSFDQFPLLPVVRHSISSQALSRTGDIVPTPIQRLAIPQLLKDPIPKRTSKDVSDHEPN  200

Query  43   ----LMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKK  76
                L+AAETGSGKT A+ IP+I  +     + +E +K
Sbjct  201  FEQYLLAAETGSGKTLAYLIPLIDSLKRMEVEDKEFEK  238


>sp|Q2TZH2|MRH4_ASPOR ATP-dependent RNA helicase mrh4, mitochondrial 
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 
GN=mrh4 PE=3 SV=1
Length=628

 Score = 181 bits (460),  Expect = 2e-47, Method: Composition-based stats.
 Identities = 79/385 (21%), Positives = 140/385 (36%), Gaps = 78/385 (20%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN--GVDIVV  344
            P+ +I+ P+ EL  Q    +K     +   K R  +I   +  R   S L N  G+DI+V
Sbjct  267  PRVIILVPTSELVAQVGVKVKALAHTV---KYRSGMISSNLTPRRIKSTLFNPDGIDILV  323

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TP  L  +  T    LS+V  LVLDEAD L+ + +      + +++          ++I
Sbjct  324  STPHLLASIAKTEPYVLSRVSHLVLDEADSLMDRSFLPTTTEIISKV-----APSLRKLI  378

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            +CSAT+    +  L  K       +      ++P  V   VV +  +  R    L  + +
Sbjct  379  LCSATIP-RSLDNLLRKRYPDIKRLTTPNLHAIPRRVQLGVVDIQKEPYRGNRNLACADV  437

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                  A D+      +  +                     + + ++F   + + D + Q
Sbjct  438  IWSIGKAGDSEPSEPFASYVGP------------------NIKKILVFVNEREEADEVAQ  479

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG--------------------  564
            +   +G              L  D    ++++ L  F +                     
Sbjct  480  FLRSKG---------IDAQSLSRDSSARKQEEILAEFTESAPPPSPEEIMLAQKKRRQED  530

Query  565  --------------------DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
                                + + L+ TD+A+RGID   V  VI   +P    +++HR+G
Sbjct  531  AIPFELPENHNKPENVRRLANTKVLVTTDLASRGIDTLPVKTVILYHVPHTTIDFIHRLG  590

Query  605  RVGRAERMGLAISLVATEKEKVWYH  629
            R+GR  + G  I LV  +  K    
Sbjct  591  RLGRMNKRGRGIVLVGKKDRKDVVK  615


 Score = 58.2 bits (139),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 22/86 (26%), Positives = 38/86 (44%), Gaps = 22/86 (26%)

Query  1    MAAFSEMGVMPEIAQAVEEMDW-----LLPTDIQAESIPLILG----GG-----------  40
            + +F    ++P +  ++          + PT IQ  +IP ++     G            
Sbjct  136  ITSFDHFPLLPVVRHSIFSQALPGLVDVTPTPIQRLAIPKLMEDSPDGKRGTKLEDGDPQ  195

Query  41   --DVLMAAETGSGKTGAFSIPVIQIV  64
                L+AAETGSGKT A+ +P++  V
Sbjct  196  YDQYLLAAETGSGKTLAYLLPLVDAV  221


>sp|Q2UQW3|ROK1_ASPOR ATP-dependent RNA helicase rok1 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=rok1 
PE=3 SV=1
Length=725

 Score = 183 bits (463),  Expect = 2e-47, Method: Composition-based stats.
 Identities = 89/494 (18%), Positives = 174/494 (35%), Gaps = 73/494 (15%)

Query  203  VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFG-----EEEFKFPPKDGFVA  257
            V F +      ++  +  ++  Q       ++   L    G     + + + P +   + 
Sbjct  175  VSFKELRTQYKISRRLAENITEQGFTVPTEVQLGTLPLLLGDRTIGQSKTEEPVEPDLLV  234

Query  258  LSKAPDGYIVKSQHSGNAQVTQ---TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYID  314
            ++    G  +        ++ +    +       A++V P++ELA Q +N  ++    + 
Sbjct  235  VAPTGSGKTLSFLIPVINKIVRHHHGQQEERGIFAVVVAPTKELASQIVNEGRKL---VS  291

Query  315  NPKLRELLIIGGVAAR---------------------------DQLSVLENGV---DIVV  344
               ++  L+  G+                              ++ S  +  V   DI+V
Sbjct  292  GTGVKITLMKKGMQVVEREDDDEDVLDEGSSESSESEDDEKTTEKKSKGKAPVTKSDILV  351

Query  345  GTPGRLDDLVSTGKLN----LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR  400
             TP +L + +S  K      L  VR +VLDEAD LL   + +    +             
Sbjct  352  TTPLQLVNALSANKTKPMATLPLVRNIVLDEADVLLDPLFREQTLDIWRAC-----THPE  406

Query  401  LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLG  460
            L+  + SAT+ S  ++ L++        +  + + S     + +   V    D     + 
Sbjct  407  LRASLWSATMGS-SIEDLAKS------TIKERKDASSLTKSYPLYRLVVGLKDSAIPNIQ  459

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
               +       K         P   + +   L+  +             +IF +T     
Sbjct  460  HKLVYAATEQGKLLGLRQLLHPAAAAASDIRLRPPF-------------LIFTQTIPRAV  506

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             L          P + G       LH D    +R + ++ F+KG++  L+ TD+ ARGID
Sbjct  507  ALHSELRYD--IPPEAGGSSRIAVLHSDLSDGQRSEIMKNFRKGEIWILVTTDLLARGID  564

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERM-GLAISLVATEKEKVWYHVCSSRGKGCY  639
              G+  V+N  +P+    YVHR+GR GRA R  G+A++    E       + +       
Sbjct  565  FRGINGVVNYDIPNSAAVYVHRVGRTGRAGREGGVAVTYYTKEDIPYVKSIANVIDVSEK  624

Query  640  NTRLKEDGGCTIWY  653
                + +     W 
Sbjct  625  LRGTEGEKSVQKWL  638


 Score = 78.2 bits (191),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 30/122 (25%), Positives = 52/122 (43%), Gaps = 20/122 (16%)

Query  3    AFSEM----GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGG-------------DVLMA  45
            +F E+     +   +A+ + E  + +PT++Q  ++PL+LG               D+L+ 
Sbjct  176  SFKELRTQYKISRRLAENITEQGFTVPTEVQLGTLPLLLGDRTIGQSKTEEPVEPDLLVV  235

Query  46   AETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG  105
            A TGSGKT +F IPVI  +      QQE +          +   +      + G     G
Sbjct  236  APTGSGKTLSFLIPVINKIVRHHHGQQEER---GIFAVVVAPTKELASQIVNEGRKLVSG  292

Query  106  SD  107
            + 
Sbjct  293  TG  294


>sp|Q5AZY1|MRH4_EMENI ATP-dependent RNA helicase mrh4, mitochondrial 
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / 
CBS 112.46 / NRRL 194 / M139) OX=227321 GN=mrh4 PE=3 SV=1
Length=630

 Score = 181 bits (458),  Expect = 3e-47, Method: Composition-based stats.
 Identities = 86/376 (23%), Positives = 143/376 (38%), Gaps = 61/376 (16%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN--GVDIVV  344
            P+A+I+ P+ EL  Q    +K F   +   K R  +I   +  R   S L N  G+DI+V
Sbjct  272  PRAIILVPTAELVAQVGAKLKAFAHTV---KFRSGIISSNLTPRRIKSTLFNPAGIDILV  328

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TP  L  +  T    LS+V  LVLDEAD L+ + +      +   I +     ++L  I
Sbjct  329  STPHLLASIAKTDPYVLSRVSHLVLDEADSLMDRSFLPISTEV---ISKAAPSLQKL--I  383

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
             CSAT+      +L  K+      +      ++P  V   VV +     R    L  + +
Sbjct  384  FCSATIPRSLDSQL-RKLYPDIWRLTTPNLHAIPRRVQLGVVDIQKDPYRGNRNLACADV  442

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                               +WS        + A     E K  + ++F   + + D + Q
Sbjct  443  -------------------IWSIGKSGAGSDEAGSPWSEPKTKKILVFVNEREEADEVAQ  483

Query  525  YFIQQGGGPDKKGHQF-------------------SCVCLHGDRKPHERKQNLERF----  561
            +   +G                             +   +   RK  +R+     F    
Sbjct  484  FLKSKGIDAHSFNRDSGTRKQEEILAEFTEPAAVPTAEEILLARKQQQRENINIPFVLPE  543

Query  562  --------KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG  613
                    +   V+ L+ TD+A+RGID   +  VI   +P    +++HR+GR+GR  + G
Sbjct  544  RTNRDTERRLDGVKVLVTTDIASRGIDTLALKTVILYHVPHTTIDFIHRLGRLGRMGKRG  603

Query  614  LAISLVATEKEKVWYH  629
             A+ LV  +  K    
Sbjct  604  RAVVLVGKKDRKDVVK  619


 Score = 57.8 bits (138),  Expect = 3e-07, Method: Composition-based stats.
 Identities = 25/90 (28%), Positives = 38/90 (42%), Gaps = 22/90 (24%)

Query  1    MAAFSEMGVMPEIAQAVEEMDW-----LLPTDIQAESIPLIL-------GGGDV------  42
            + +F    ++P +  ++           +PT IQ  +IP +L           V      
Sbjct  141  ITSFDAFTLLPIVRNSIFSQALPGIADAVPTPIQRVAIPRLLEDAPAKKQAKKVDDDEPQ  200

Query  43   ----LMAAETGSGKTGAFSIPVIQIVYETL  68
                L+AAETGSGKT A+ IPVI  +    
Sbjct  201  YEQYLLAAETGSGKTLAYLIPVIDAIKRQE  230


>sp|Q4IPI1|ROK1_GIBZE ATP-dependent RNA helicase ROK1 OS=Gibberella 
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / 
NRRL 31084 / PH-1) OX=229533 GN=ROK1 PE=3 SV=1
Length=693

 Score = 181 bits (460),  Expect = 3e-47, Method: Composition-based stats.
 Identities = 105/529 (20%), Positives = 173/529 (33%), Gaps = 74/529 (14%)

Query  213  GLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDG-----FVALSKAPDGYIV  267
            GL+ ++  ++  Q       ++   L      +              F+A++    G  +
Sbjct  165  GLSDKVADNLVFQGYRVPTEVQMGSLPLLVHPQAALKDEDGLDGGVDFLAIAPTGSGKTI  224

Query  268  KSQHSGNAQVTQTKFLPN-----APKALIVEPSRELAEQTLNNIKQFKKYID----NPKL  318
                     + + +   N       +A+IV P+REL  Q ++  ++  K       + K 
Sbjct  225  SFLIPAINNILRRRSEENTGNIHELEAVIVAPTRELVHQIVSEGQKLCKGTGLKVVSMKK  284

Query  319  RELLIIGGVAARDQLSVLENG----------------------VDIVVGTPGRLDDLVST  356
               L    V   +  S  E                         DI+V TP  L   +++
Sbjct  285  HTHLSADQVDMAEDSSEDEEDKESESEDDDKKPSDDKPKQITTPDILVTTPFLLFKFLTS  344

Query  357  GKLN----LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHS  412
            G  +    L  VR L+LDEAD LL   +     R              L+V   SAT+ S
Sbjct  345  GPPSTQKVLPTVRDLILDEADVLLDPLF-----RDATMADWTACTNTNLRVSFWSATMGS  399

Query  413  FDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAK  472
                 ++EK+      +D+  +  V   V      V     +L     +           
Sbjct  400  NIESMVTEKLTSRAQSLDITPKPFVRLVVGLKDTAVPNIAHKLIYTASEQGKLLALRQLL  459

Query  473  DNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGG  532
              T    + P +                         ++F +T      L +    Q   
Sbjct  460  HPTASDDSGPPLRPPF---------------------LVFTQTIDRATALHEEL--QYDI  496

Query  533  PDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTL  592
            P + G       LH       R   + +F+ GD+  LI TDV ARG+D  GV  V+N  +
Sbjct  497  PLEAGGAARIAALHSGLTDSARSSIMRKFRAGDIWILITTDVLARGVDFAGVNGVVNYDV  556

Query  593  PDEKQNYVHRIGRVGRAERM-GLAISLVATEK---EKVWYHVCSSRGKGCYNTRLKEDGG  648
            P     YVHR GR GRA R  G+A++    E     K+  +V +   K    T   ++ G
Sbjct  557  PGSSAGYVHRAGRTGRAGREGGIAVTFYTKEDIPFVKMVANVIAVSEKQAGKT--GDEAG  614

Query  649  CTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAG  697
               W  +        +         E        +   K  Y ++R   
Sbjct  615  VQKWLLDALPNVRKADRKKLKERGNEARRSGVKSKISSKSGYERRRENN  663


 Score = 72.5 bits (176),  Expect = 8e-12, Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 47/122 (39%), Gaps = 18/122 (15%)

Query  3    AFSEM----GVMPEIAQAVEEMDWLLPTDIQAESIPLILG-------------GGDVLMA  45
            +F E+    G+  ++A  +    + +PT++Q  S+PL++              G D L  
Sbjct  156  SFGELRNAYGLSDKVADNLVFQGYRVPTEVQMGSLPLLVHPQAALKDEDGLDGGVDFLAI  215

Query  46   AETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG  105
            A TGSGKT +F IP I  +     ++  G           +   +        G     G
Sbjct  216  APTGSGKTISFLIPAINNILRRRSEENTGNI-HELEAVIVAPTRELVHQIVSEGQKLCKG  274

Query  106  SD  107
            + 
Sbjct  275  TG  276


>sp|Q5BET6|ROK1_EMENI ATP-dependent RNA helicase rok1 OS=Emericella 
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 
194 / M139) OX=227321 GN=rok1 PE=3 SV=1
Length=742

 Score = 182 bits (462),  Expect = 4e-47, Method: Composition-based stats.
 Identities = 98/498 (20%), Positives = 164/498 (33%), Gaps = 79/498 (16%)

Query  203  VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAP  262
            V F +      ++  +  ++  Q       ++   L    G         D   A    P
Sbjct  185  VSFKELRSKYKISRRLAENIAEQGFTVPTEVQLGSLPLLLGNSAVPGGSSDSTSA--TEP  242

Query  263  DGYIVKSQHSGNA------------QVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFK  310
            D  +V    SG              +   T        A++V P++ELA Q +N  ++  
Sbjct  243  DLLVVAPTGSGKTLSFMIPVINKIVRHHHTHPEERGIFAVVVAPTKELASQIVNEGRKLA  302

Query  311  KYIDNPKLRELLIIGGVAA----RDQLSVL--------------------ENGV------  340
                   ++  L+  G+       +   VL                      G       
Sbjct  303  ---LGTGVKVTLMKKGMRVVERENEDEDVLDESNSESSESESDERTPNNKNKGPVPITKS  359

Query  341  DIVVGTPGRLDDLVSTGKLN----LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTS  396
            DI+V TP +L + +S  K      L  VR LVLDEAD LL   + D    +       + 
Sbjct  360  DILVSTPLQLVNALSDNKTKPLATLPLVRNLVLDEADVLLDPLFRDQTLDIWR-----SC  414

Query  397  DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLW  456
                L+  + SAT+ S                     ED    T+    + +        
Sbjct  415  THPELRASLWSATMGSS-------------------IEDMAKTTIKERKLSLPQTKSYPL  455

Query  457  ERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTK  516
             RL      +   + K      A          +++    A  +    +    +IF +T 
Sbjct  456  LRLVVGLKDSAIPNIKHKLVYAATEQGKLLGLRQLIHPTAATTSDVRLRP-PFLIFTQTI  514

Query  517  IDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAA  576
                 L    +     P + G       LH D    +R   ++ F+KG++  L+ TD+ A
Sbjct  515  PRAIALHSELLYD--IPPEAGGSARIAVLHSDLSDTQRSDIMKGFRKGEIWILVTTDLLA  572

Query  577  RGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM-GLAISLVATEKEKVWYHVCSSRG  635
            RG+D  G+  V+N  +P+    YVHR+GR GRA R  G+A++    E       + +   
Sbjct  573  RGVDFRGINGVVNYDIPNSPAVYVHRVGRTGRAGREGGVAVTYYTKEDIPYVKSIANIID  632

Query  636  KGCYNTRLKEDGGCTIWY  653
                      +     W 
Sbjct  633  VSEKLRGENGERSVQKWL  650


 Score = 73.6 bits (179),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 52/124 (42%), Gaps = 22/124 (18%)

Query  3    AFSEM----GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGG---------------DVL  43
            +F E+     +   +A+ + E  + +PT++Q  S+PL+LG                 D+L
Sbjct  186  SFKELRSKYKISRRLAENIAEQGFTVPTEVQLGSLPLLLGNSAVPGGSSDSTSATEPDLL  245

Query  44   MAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA  103
            + A TGSGKT +F IPVI  +           + +       +   +      + G   A
Sbjct  246  VVAPTGSGKTLSFMIPVINKIVRHH---HTHPEERGIFAVVVAPTKELASQIVNEGRKLA  302

Query  104  IGSD  107
            +G+ 
Sbjct  303  LGTG  306


>sp|Q5XPI3|RN123_MOUSE E3 ubiquitin-protein ligase RNF123 OS=Mus 
musculus OX=10090 GN=Rnf123 PE=1 SV=1
Length=1314

 Score = 184 bits (466),  Expect = 6e-47, Method: Composition-based stats.
 Identities = 61/217 (28%), Positives = 93/217 (43%), Gaps = 10/217 (5%)

Query  117  KEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLD----LGTDKFGFGFGGTGK  172
              +   R+T  + KGK  YEV    QGL ++GW T+    +    +G     + + G   
Sbjct  119  SNFGTIRSTTCVYKGKWVYEVLISSQGLMQIGWCTINCRFNQEEGVGDTHNSYAYDGNRV  178

Query  173  KSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACV  232
            +  N    NYG+ +   D + C +D+D G + F  NG  LG AFE        A FPA  
Sbjct  179  RKWNVTTTNYGKAWAAGDIVSCLIDLDDGTLSFCLNGVSLGTAFENLSRGLGMAYFPAIS  238

Query  233  LKNAE-LKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQH-SGNAQVTQTKFLPNAPKAL  290
            L   E + FNFG    ++P   GF  L   P   +V++Q   G  Q   +  L      L
Sbjct  239  LSFKESVAFNFGSRPLRYPVA-GFRPLQDPPFADLVRAQRLLGCFQAVLSVELDPVEGRL  297

Query  291  IVEPSRELAEQTLNNIKQFKKYIDN---PKLRELLII  324
            +   S E   Q    +     +I +   P LR++ ++
Sbjct  298  VETESSEWQLQGQPTVLLTLAHIFHHFAPLLRKVYLV  334


>sp|Q0CMB0|ROK1_ASPTN ATP-dependent RNA helicase rok1 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=rok1 
PE=3 SV=2
Length=749

 Score = 181 bits (459),  Expect = 8e-47, Method: Composition-based stats.
 Identities = 93/500 (19%), Positives = 176/500 (35%), Gaps = 79/500 (16%)

Query  203  VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDG------FV  256
            V F +      ++  +  ++  Q       ++   L    G+   +   K G       +
Sbjct  192  VSFKELRTKYKISRRLAENIAEQGFTVPTEVQLGTLPLQLGDSSVQQASKPGETVEPDLL  251

Query  257  ALSKAPDGYIVKSQHSGNAQVTQ---TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI  313
             ++    G  +        ++ +    +       A++V P++ELA Q +N  ++    +
Sbjct  252  VVAPTGSGKTLSFLIPVINKIVRHHHEQPDERGIFAVVVAPTKELASQIVNEGRKL---V  308

Query  314  DNPKLRELLIIGGVAA--------RDQLSVLEN---------------------------  338
                ++  L+  G+           D+  VL+                            
Sbjct  309  QGTGVKITLMKKGMQVVERDGDGDSDEKDVLDEDSADSGSDSEDDEQTTDKKTKGKAPVT  368

Query  339  GVDIVVGTPGRLDDLVSTGKLN----LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV  394
              DI+V TP  L + +S  +      L  VR +VLDEAD LL   + +    +       
Sbjct  369  KSDILVTTPLLLVNALSANRTKPLAALPLVRNIVLDEADVLLDPLFREQTLDIWR-----  423

Query  395  TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDR  454
            +     L+  + SAT+ S +V+ L++  +      DL G       +  VV   +     
Sbjct  424  SCTHPELRASLWSATMGS-NVEDLAKSTIQ--ERKDLSGTTKSYPLIRLVVGLKDSAIPN  480

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
            +  +L  +      +                   ++ L    A  A   H     +IF +
Sbjct  481  IQHKLVYAATEQGKLLG-----------------LRQLLHPTARTATDVHLRPPFLIFTQ  523

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
            T      L    +     P + G       LH +    +R + ++ F+KG++  L+ TD+
Sbjct  524  TIPRAVALHSELLYD--IPPEAGGSSRIAVLHSELSDSQRSEIMKGFRKGEIWILVTTDL  581

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM-GLAISLVATEKEKVWYHVCSS  633
             ARG+D  G+  V+N  +P+    YVHR+GR GRA R  G+A++    E       + + 
Sbjct  582  LARGVDFRGINGVVNYDIPNSAAVYVHRVGRTGRAGREGGVAVTYYTKEDIPYVKSIANI  641

Query  634  RGKGCYNTRLKEDGGCTIWY  653
                        +     W 
Sbjct  642  IDVSEKLRGAGGEKSVQKWL  661


 Score = 71.3 bits (173),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 28/123 (23%), Positives = 51/123 (41%), Gaps = 21/123 (17%)

Query  3    AFSEM----GVMPEIAQAVEEMDWLLPTDIQAESIPLILG--------------GGDVLM  44
            +F E+     +   +A+ + E  + +PT++Q  ++PL LG                D+L+
Sbjct  193  SFKELRTKYKISRRLAENIAEQGFTVPTEVQLGTLPLQLGDSSVQQASKPGETVEPDLLV  252

Query  45   AAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
             A TGSGKT +F IPVI  +     +Q + +          +   +      + G     
Sbjct  253  VAPTGSGKTLSFLIPVINKIVRHHHEQPDER---GIFAVVVAPTKELASQIVNEGRKLVQ  309

Query  105  GSD  107
            G+ 
Sbjct  310  GTG  312


>sp|A2QCW6|DBP9_ASPNC ATP-dependent RNA helicase dbp9 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=dbp9 PE=3 SV=1
Length=616

 Score = 179 bits (454),  Expect = 1e-46, Method: Composition-based stats.
 Identities = 82/408 (20%), Positives = 143/408 (35%), Gaps = 30/408 (7%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
             + L L   +   +  +       ++   +                 +A +K   G    
Sbjct  29   FESLNLDPRLRQALIKEKFTKPTPVQAKAIPLALA--------GKDILARAKTGSGKTAA  80

Query  269  SQHSGNAQVTQTKFLPN---APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
                    + Q K       A   LI+ P+RELAEQ    +  F  +     +R + +  
Sbjct  81   YVLPILQTILQKKAADPSLKATTGLILVPTRELAEQVQKVVTTFAAFC-GKDVRSVNLTQ  139

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
             V+   Q ++L +  DIV+ TP R+   +    L+L  +  LV+DEAD +LS GY + IN
Sbjct  140  KVSEAVQRTMLSDYPDIVISTPARVIANLGNSSLSLDNLTHLVIDEADLVLSYGYDEDIN  199

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVV  445
             +   IP      + +Q  + SATL S +V  L       P  + L+ ++     V   V
Sbjct  200  ALSKAIP------RGVQTFLMSATLTS-EVDTLKGLFCRSPVVLKLEDKEEKGAGVSQFV  252

Query  446  VPVNPKTDRLWERLGKSHIRTD-----DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRA  500
            V        L   +              V   D         E +     +L  E  V +
Sbjct  253  VKCAEDEKFLLTYVIFKLQLIKGKVIIFVGDIDRCYRLKLFLEQFGVKSCVLNSELPVNS  312

Query  501  IKE--HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNL  558
                  + ++ +       D   +     ++         + +   + G     E + + 
Sbjct  313  RIHVVQEFNKGVYDIIIAADDQEVLGSKSKKAKNAGADEEEEAAGVM-GSSDDEEAEDDK  371

Query  559  ERFKKGDVRFLICTDV---AARGIDIHGVPYVINVTLPDEKQNYVHRI  603
            +  +    R L   +     +RGID   V  V+N  LP   ++Y HRI
Sbjct  372  KSNRPDKRRKLTAKEKDYGISRGIDFQNVACVLNFDLPTTAKSYTHRI  419


 Score = 104 bits (258),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 29/101 (29%), Positives = 48/101 (48%), Gaps = 3/101 (3%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F  + + P + QA+ +  +  PT +QA++IPL L G D+L  A+TGSGKT A+ +P++Q 
Sbjct  29   FESLNLDPRLRQALIKEKFTKPTPVQAKAIPLALAGKDILARAKTGSGKTAAYVLPILQT  88

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
            + +        K    T         +         + FA 
Sbjct  89   ILQKKAADPSLK---ATTGLILVPTRELAEQVQKVVTTFAA  126


>sp|Q9W3Y5|Y4443_DROME Putative ATP-dependent RNA helicase CG14443 
OS=Drosophila melanogaster OX=7227 GN=CG14443 PE=3 SV=2
Length=736

 Score = 180 bits (457),  Expect = 1e-46, Method: Composition-based stats.
 Identities = 72/382 (19%), Positives = 135/382 (35%), Gaps = 74/382 (19%)

Query  251  PKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFL---PNAPKALIVEPSRELAEQTLNNIK  307
                 V +S    G  +     G  ++   + L      P  LI+   RE A      + 
Sbjct  366  EGKNIVMISGKGTGKTLGYLLPGIMKMHNQRGLMQHKKGPIVLILVDCREAAVMVQREV-  424

Query  308  QFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGK--LNLSQVR  365
                Y +  +LR   ++G    +          D++V + GRL  ++   K  + L +  
Sbjct  425  --LYYTNPLELRTHCLLGNSQWQGHAE-----CDLLVASAGRLLQMIDNKKHVVELERCT  477

Query  366  FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF  425
            +LVLD  D ++  G    I R+  ++          Q+IV S+T  S ++K+++ K +  
Sbjct  478  YLVLDNIDRMIDVGLEGNICRLLCRL------RPHAQLIV-SSTSWSSNLKRMANKFLGQ  530

Query  426  PTWVDLKGEDSVPDTVHHV-----VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480
             T + +   +++   + ++     VV    K +RL + L   +  +D             
Sbjct  531  YTAIRVGEINNIGVRLQNIRQRVEVVNGLSKVERLMKELTAIYDTSDI------------  578

Query  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540
                                       + +I+ + +   + L               +  
Sbjct  579  -------------------------PGKVVIYVKRQKVVEELVDLIR----------NCV  603

Query  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV  600
             C  +HG R   E +  +  F  G    ++ T + +  +D+ G+ YVIN   PD    YV
Sbjct  604  PCEGIHGGRTAQENQGIIHDFGTGAYNIIVATQMTSNCLDVPGIRYVINYDFPDNIDKYV  663

Query  601  HRIGRVG--RAERMGLAISLVA  620
             R+ R G     R    IS   
Sbjct  664  QRMSRTGCLSYNRNCEVISFFT  685


 Score = 71.3 bits (173),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV  60
            + +F   G    I Q +E+  +  PT IQA++  +   G +++M +  G+GKT  + +P 
Sbjct  329  VLSFERSGFNATILQQLEDQGYDGPTPIQAQTWSIAKEGKNIVMISGKGTGKTLGYLLPG  388

Query  61   IQIVYETLKDQQEGKKGK  78
            I  ++      Q  KKG 
Sbjct  389  IMKMHNQRGLMQ-HKKGP  405


>sp|Q54BD6|DDX51_DICDI Probable ATP-dependent RNA helicase ddx51 
OS=Dictyostelium discoideum OX=44689 GN=ddx51 PE=3 SV=1
Length=563

 Score = 176 bits (445),  Expect = 7e-46, Method: Composition-based stats.
 Identities = 79/365 (22%), Positives = 134/365 (37%), Gaps = 25/365 (7%)

Query  294  PSRELAEQTLNNIKQFKKYIDNPKLREL---------LIIGGVAARDQLSVLENGVDIVV  344
            P+ +L  Q     +   K  D   L            L+I   +  +   + E+ VDI+V
Sbjct  94   PTHDLVIQVEKTFQSIIKGTDLVVLSLGVKPFHIEQKLLIKNHSYGEHA-LYESLVDIIV  152

Query  345  GTPGRLDDLVSTG-KLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT--SDGKRL  401
             TPGR+ D ++      L  + +LV+DEAD LL Q + D++  + +   Q +  +  +  
Sbjct  153  STPGRIVDHINETLGFTLKYLNYLVIDEADRLLRQSFQDWLEIVIDSTNQHSDLNQQQEE  212

Query  402  QVIVC-SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLG  460
            Q+I   S        K +S K  +         E  +   +    +  NP    L +   
Sbjct  213  QLIKYNSKGDIELFEKSISLKDNNNQMNHLCWSEFKLVKLLLSATMTYNPSKISLLQLNA  272

Query  461  KSHIRTDDVHAKDNTRPG--------ANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF  512
                 T        + P         +N  +     + I+               + I F
Sbjct  273  PLFFTTSKTKEIKYSMPSTLKECYIISNGDQKPLVLLNIIYESLLKNNANGENKKKIICF  332

Query  513  CRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICT  572
             ++      L       G        +F+C          ER   L RFK   +  LIC+
Sbjct  333  TKSVDITHRLNTLLKLIG---QVDKLKFTCEEYSSSLSTVERADLLSRFKLNQIDILICS  389

Query  573  DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
            D+ +RG+DI  +  VIN   P     YVHR+GR  RA   G++ ++V   + K +  +  
Sbjct  390  DIMSRGMDIQDIDVVINYNTPPNITLYVHRVGRTARAGNFGVSYTIVDKSEIKYYISMMK  449

Query  633  SRGKG  637
               + 
Sbjct  450  KAERS  454


 Score = 64.0 bits (154),  Expect = 3e-09, Method: Composition-based stats.
 Identities = 19/62 (31%), Positives = 32/62 (52%), Gaps = 2/62 (3%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLI--LGGGDVLMAAETGSGKTGAFSIPV  60
                G+   +   ++E   +    +Q E +P I    G D+ + A TGSGKT A++IP+
Sbjct  16  TLESFGIEEWLINNLKEQSIINLFPVQQEIVPFINRTEGHDICVCAPTGSGKTLAYAIPL  75

Query  61  IQ  62
           +Q
Sbjct  76  VQ  77


>sp|A1D1E3|ROK1_NEOFI ATP-dependent RNA helicase rok1 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=rok1 
PE=3 SV=1
Length=738

 Score = 178 bits (451),  Expect = 8e-46, Method: Composition-based stats.
 Identities = 79/486 (16%), Positives = 158/486 (33%), Gaps = 75/486 (15%)

Query  213  GLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDG------FVALSKAPDGYI  266
             ++  +  ++  Q       ++   L       +     KD        + ++    G  
Sbjct  197  KISRRLAENIAEQGFSVPTEVQLGTLPLLLEGFKVSGNSKDAESIEPDLLVVAPTGSGKT  256

Query  267  VKSQHSGNAQVTQ---TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLI  323
            +        ++ +    +       +++V P++ELA Q +N  ++         ++  L+
Sbjct  257  LSFLIPVINKIVRHHHEQEEERGIFSVVVAPTKELASQIVNEGRKLVH---GTGVKITLM  313

Query  324  IGG-------------------------------VAARDQLSVLENGVDIVVGTPGRLDD  352
              G                                  + +        DI+V TP  L +
Sbjct  314  KKGMRVVDREDDDDENSHSEDSEEGSESEQDEPSTTRKKKGKAPVTKSDILVTTPLLLVN  373

Query  353  LVSTGKLN----LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSA  408
             +S  +      L  VR +VLDEAD LL + + D    +             L+  + SA
Sbjct  374  ALSANRTKPMATLPLVRNIVLDEADVLLDELFRDQTLDIWRAC-----THPELRASLWSA  428

Query  409  TLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDD  468
            T+ S +++ L++  +            +    +  VV   +     +  +L  +      
Sbjct  429  TMGS-NIEDLAKSTIK--ERKQAYDRTNSYPLLRLVVGLKDSAIPNIEHKLVYAATEQGK  485

Query  469  VHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQ  528
            +         A +                            +IF +T      L      
Sbjct  486  LLGLRQLLHPAAASASDVRLRPPF-----------------LIFTQTIPRAIALHSELRY  528

Query  529  QGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVI  588
                      + +   LH D    +R + ++ F+KG++  L+ TD+ ARG+D  G+  V+
Sbjct  529  DIPAEAGGSSRIAV--LHSDLSDGQRSEIMKNFRKGEIWILVTTDLLARGVDFRGINGVV  586

Query  589  NVTLPDEKQNYVHRIGRVGRAERM-GLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDG  647
            N  +P+    YVHR+GR GRA R  G+A++    E       + +             + 
Sbjct  587  NYDIPNSAAVYVHRVGRTGRAGREGGIAVTYYTKEDIPYVKSIANIIDVSEKLRGKDGEK  646

Query  648  GCTIWY  653
                W 
Sbjct  647  SIQKWL  652


 Score = 79.0 bits (193),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 28/118 (24%), Positives = 51/118 (43%), Gaps = 21/118 (18%)

Query  3    AFSEM----GVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--------------GDVLM  44
            +F E+     +   +A+ + E  + +PT++Q  ++PL+L G               D+L+
Sbjct  188  SFKELRTRYKISRRLAENIAEQGFSVPTEVQLGTLPLLLEGFKVSGNSKDAESIEPDLLV  247

Query  45   AAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
             A TGSGKT +F IPVI  +     +Q+E +          +   +      + G   
Sbjct  248  VAPTGSGKTLSFLIPVINKIVRHHHEQEEER---GIFSVVVAPTKELASQIVNEGRKL  302


>sp|Q4WRH5|ROK1_ASPFU ATP-dependent RNA helicase rok1 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=rok1 PE=3 SV=1
Length=739

 Score = 178 bits (450),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 78/450 (17%), Positives = 154/450 (34%), Gaps = 69/450 (15%)

Query  243  GEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQ---TKFLPNAPKALIVEPSRELA  299
            G  +     +   + ++    G  +        ++ +    +       ++IV P++ELA
Sbjct  234  GNSKSAESIEPDLLVVAPTGSGKTLSFLIPVINKIVRHHHEQEKERGIFSVIVAPTKELA  293

Query  300  EQTLNNIKQFKKYIDNPKLRELLIIGGV-----------------------AARDQLSVL  336
             Q +N  ++    +    ++  L+  G+                       + +D+ S  
Sbjct  294  SQIVNEGRKL---VHGTGVKITLMKKGMRVVDREDDDDENSHSEDSEEGSDSEQDEPSTT  350

Query  337  ENG--------VDIVVGTPGRLDDLVSTGKLN----LSQVRFLVLDEADGLLSQGYSDFI  384
                        DI+V TP  L + +S  +      L  VR +VLDEAD LL + + +  
Sbjct  351  RKKKGKAPITKSDILVTTPLLLVNALSANRTKPMATLPLVRNIVLDEADVLLDELFREQT  410

Query  385  NRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV  444
              +             L+  + SAT+ S +++ L++  +          +      +  V
Sbjct  411  LDIWRAC-----THPELRASLWSATMGS-NIEDLAKSTIK--ERKQAYDQTKSYPLLRLV  462

Query  445  VVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEH  504
            V   +     +  +L  +      +         A +                       
Sbjct  463  VGLKDSAIPNIEHKLVYAATEQGKLLGLRQLLHPAAASVSDVRLRPPF------------  510

Query  505  KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG  564
                 +IF +T      L                + +   LH D    +R + ++ F+KG
Sbjct  511  -----LIFTQTIPRAIALHSELRYDIPAEAGGSSRIAV--LHSDLSDGQRSEIMKNFRKG  563

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM-GLAISLVATEK  623
            ++  L+ TD+ ARG+D  G+  V+N  +P+    YVHR+GR GRA R  G+A++    E 
Sbjct  564  EIWILVTTDLLARGVDFRGINGVVNYDIPNSAAVYVHRVGRTGRAGREGGIAVTYYTKED  623

Query  624  EKVWYHVCSSRGKGCYNTRLKEDGGCTIWY  653
                  + +             +     W 
Sbjct  624  IPYVKSIANIIDVSEKLRGKDGEKSIQKWL  653


 Score = 65.2 bits (157),  Expect = 1e-09, Method: Composition-based stats.
 Identities = 27/123 (22%), Positives = 48/123 (39%), Gaps = 31/123 (25%)

Query  3    AFSEM----GVMPEIAQAVEEMDWLLPTDIQ-------------------AESIPLILGG  39
            +F E+     +   +A+ + E  + +PT++Q                   AESI      
Sbjct  189  SFKELRTRYKISRRLAENIAEQGFTVPTEVQLGTLPLLLGGFKASGNSKSAESIEP----  244

Query  40   GDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRG  99
             D+L+ A TGSGKT +F IPVI  +     +Q++ +          +   +      + G
Sbjct  245  -DLLVVAPTGSGKTLSFLIPVINKIVRHHHEQEKER---GIFSVIVAPTKELASQIVNEG  300

Query  100  SAF  102
               
Sbjct  301  RKL  303


>sp|Q4P7M1|DBP9_USTMA ATP-dependent RNA helicase DBP9 OS=Ustilago 
maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP9 PE=3 SV=1
Length=686

 Score = 176 bits (447),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 100/525 (19%), Positives = 179/525 (34%), Gaps = 64/525 (12%)

Query  254  GFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI  313
            G   L K  D     ++   N Q+T         +AL++ P+RELAEQ   ++    +Y+
Sbjct  114  GLPLLQKVLDAKSAVAKSDANHQLT---------RALVLVPTRELAEQVFRHLSVVIEYV  164

Query  314  DNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQ-VRFLVLDEA  372
                +R + +    + + Q  +L    D+V+ TP +  + +    L+L   +  L +DEA
Sbjct  165  -RDDIRLVNVAREASEKVQRLLLSEKPDVVIATPSKALNYLQNASLDLKSGMESLAIDEA  223

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
            D +LS G+   +  +              Q  + SAT+ S DV KL   ++  P  + L 
Sbjct  224  DLILSYGHDADVKSLLG----ANFLPSHFQSFLMSATMTS-DVSKLKGLLLRNPVVLKLN  278

Query  433  GEDSVPDT---VHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAI  489
             +D        V             L   + K  +         N        +++ E  
Sbjct  279  HDDEAASGSNLVQFYTKTTEEDKFLLAYVILKLKLIRGKAILFVNELERGYRLKLFLEKF  338

Query  490  KI--------LKGEYAVRAIKEHKMDQAIIFCRTKIDC------------------DNLE  523
             +        L        ++E    +      T                      D  E
Sbjct  339  GLRACVLNAELPINSRYSIVEEFNKGKFDYIVATDEPTGASGNMQDDEGDDEEEDADERE  398

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
               + +     ++  +      H   +    K  + + +KG           +RG+D   
Sbjct  399  ADEVDEQAEDQREAGKKRKSSEHAGAETKSNKSKVSQHRKGKNGA--SEYGVSRGVDFIN  456

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK----EKVWYHVCSSRGKGCY  639
            V  VIN  LP    +Y+HR+GR  R    G A+S V         K  Y   ++R +  +
Sbjct  457  VSCVINFDLPTSVDSYIHRVGRTARGGASGTALSFVVPSDQVGRSKYLYCASTTRDESVF  516

Query  640  NTRLKED------GGCTIWYNEMQLLSEIEEHLNCTISQVEPDI--KVPVDEFDGKVTYG  691
                K             W  +   ++     +  T+  +   +  +  + E   ++   
Sbjct  517  KMLNKPSTISLLGSALQEWKYDSSSVAGFHYRVTDTLKSITKALIREARIKELKNEILTS  576

Query  692  QKRAAGGGSYKGHVDILAPTVQELAALEKEAQTSFLHLGYLPNQL  736
             K       ++ H D LA    + A L   AQ S  HL ++P  L
Sbjct  577  SK---LQSHFEDHPDDLAFLQHDKALLTSRAQQS--HLKHVPQYL  616


 Score = 95.2 bits (235),  Expect = 7e-19, Method: Composition-based stats.
 Identities = 26/94 (28%), Positives = 47/94 (50%), Gaps = 2/94 (2%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            FS + + P + +A+ ++ + +PT IQ ++IPL L G D+L  A TGSGKT A+ +P++Q 
Sbjct  62   FSHI-LDPRLLRALADLGYGIPTPIQQKAIPLALAGKDILARARTGSGKTLAYGLPLLQK  120

Query  64   VYETLKDQQEGKKGKTTIKTGAS-VLNKWQMNPY  96
            V +      +        +        +     +
Sbjct  121  VLDAKSAVAKSDANHQLTRALVLVPTRELAEQVF  154


>sp|Q3E9C3|RH58_ARATH DEAD-box ATP-dependent RNA helicase 58, 
chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RH58 PE=2 SV=1
Length=472

 Score = 172 bits (436),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 83/455 (18%), Positives = 152/455 (33%), Gaps = 63/455 (14%)

Query  198  IDKGHVKFSKNGKDLGLAFE-IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFV  256
            + +  V  +      G   E I   M+         ++   L   F             +
Sbjct  66   VTETTVPLTLRQICQGFVPEHILHRMEEIGFVFPTDIQREALPTLF--------TGRDCI  117

Query  257  ALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKK--YID  314
              ++   G  +       + +       ++ +A+IV P+REL  Q     +       ID
Sbjct  118  LHAQTGSGKTLTYLLLIFSLIN---PQRSSVQAVIVVPTRELGMQVTKVARMLAAKSEID  174

Query  315  NPKLRELLIIGGVAARDQLSVLE-NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEAD  373
                  + ++ G   R   S L+     I+V T   L  ++      +  VR LV+DE D
Sbjct  175  VKGCTVMALLDGGTLRRHKSWLKAEPPAILVATVASLCHMLEKHIFRIDSVRVLVVDEVD  234

Query  374  GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG  433
             L     S  +  +   +   +S  K  Q +  SA++                       
Sbjct  235  FLFYS--SKQVGSVRKLLTSFSSCDK-RQTVFASASIPQH--------------------  271

Query  434  EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK  493
            +  V D +       +                   VH              +    K  K
Sbjct  272  KHFVHDCIQQKWTKRD----------------VVHVHVSAIMPMPLCLLHRFVMCEKTNK  315

Query  494  GEYAVRAIKEHKMDQAIIFC-----RTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGD  548
             +  +  ++    + AIIF      ++K   ++     + +      KG     + L GD
Sbjct  316  HQVLLALLESDAPESAIIFVGEQSEKSKKAGNDPSTTLLMEFLKTSYKG-SLEILLLEGD  374

Query  549  RKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
               + R  +L   ++G    L+ TD+AARGID+    ++ N  LP    +Y+HR GR GR
Sbjct  375  MNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHRAGRAGR  434

Query  609  ---AERMGLAISLVATEKEKVWYHVCSSRGKGCYN  640
               ++R  +  +L+ +E+  V     +     C  
Sbjct  435  KPFSDRKCIVANLITSEERFVLQRYENELMFSCEE  469


 Score = 74.4 bits (181),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 9/99 (9%)

Query  9    VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETL  68
            V   I   +EE+ ++ PTDIQ E++P +  G D ++ A+TGSGKT  + + +  ++    
Sbjct  83   VPEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQR  142

Query  69   KDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSD  107
               Q                 +  M         A  S+
Sbjct  143  SSVQ---------AVIVVPTRELGMQVTKVARMLAAKSE  172


>sp|A1CNK1|ROK1_ASPCL ATP-dependent RNA helicase rok1 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=rok1 PE=3 SV=1
Length=738

 Score = 176 bits (446),  Expect = 4e-45, Method: Composition-based stats.
 Identities = 85/413 (21%), Positives = 151/413 (37%), Gaps = 68/413 (16%)

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-  337
            Q++       ++IV P++ELA Q +N  ++    +    ++  L+  G+   ++    + 
Sbjct  269  QSQEQERGIFSIIVAPTKELASQIVNEGRKL---VHGTGVKIALMKKGMRVVEREDEDDD  325

Query  338  --------------------------------NGVDIVVGTPGRLDDLVSTGKLN----L  361
                                               DI+V TP +L + +ST +      L
Sbjct  326  GDDSSSEDGDESSESEHEERPIAKKSKGKAPVTKSDILVTTPLQLVNALSTNQTKPMATL  385

Query  362  SQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEK  421
              VR +VLDEAD LL   + D    +             L+  + SAT+ S +V+ L++ 
Sbjct  386  PLVRNIVLDEADVLLDPLFRDQTLNIWRAC-----THPELRASLWSATMGS-NVEDLAK-  438

Query  422  IMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANS  481
                              T+      VN        RL    ++   +   ++    A +
Sbjct  439  -----------------STIKERKEAVNQTKSYPLLRLV-VGLKDSAIPNIEHKLIYAAT  480

Query  482  PEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFS  541
             +     ++ L    A  A         +IF +T      L          P + G    
Sbjct  481  EQGKLLGLRQLLHPTAASASDVRLRPPFLIFTQTIPRAVALHSELRYD--IPTEAGGSSR  538

Query  542  CVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH  601
               LH D    +R + ++ F+KG++  L+ TD+ ARG+D  G+  V+N  +P+    YVH
Sbjct  539  IAVLHSDLSDGQRSEIMKNFRKGEIWILVTTDLLARGVDFRGINGVVNYDIPNSAAVYVH  598

Query  602  RIGRVGRAERM-GLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWY  653
            R+GR GRA R  G+A++    E       + +             +     W 
Sbjct  599  RVGRTGRAGREGGIAVTYYTKEDIPYVKSIANIIDVSEKLRGKTGEKSIQKWL  651


 Score = 65.2 bits (157),  Expect = 1e-09, Method: Composition-based stats.
 Identities = 31/115 (27%), Positives = 53/115 (46%), Gaps = 17/115 (15%)

Query  3    AFSEM----GVMPEIAQAVEEMDWLLPTDIQAESIPLILG----------GGDVLMAAET  48
            +F E+     +   +A+ + E  + +PT++Q  ++PL+LG            D+L+ A T
Sbjct  187  SFKELRSKYKISSRLAENIAEQGFTVPTEVQLGTLPLLLGGFESKAGESVEPDLLVVAPT  246

Query  49   GSGKTGAFSIPVIQIVYETLKDQ-QEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
            GSGKT +F IPVI  +     DQ QE ++G        +   +      + G   
Sbjct  247  GSGKTLSFLIPVINKIVRHHHDQSQEQERG--IFSIIVAPTKELASQIVNEGRKL  299


>sp|Q75NR7|RECQ4_MOUSE ATP-dependent DNA helicase Q4 OS=Mus musculus 
OX=10090 GN=Recql4 PE=2 SV=2
Length=1216

 Score = 178 bits (450),  Expect = 6e-45, Method: Composition-based stats.
 Identities = 95/517 (18%), Positives = 165/517 (32%), Gaps = 90/517 (17%)

Query  242  FGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKA----LIVEPSRE  297
             G   F+   +   + +       +V    +G +   Q   L  A ++    L+V P   
Sbjct  493  LGYRAFRPGQERAIMRILSGISTLLVLPTGAGKSLCYQLPALLYAQRSPCLTLVVSPLLS  552

Query  298  LAE-QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGTPGRLDD  352
            L + Q  +             L+   +  G+  + + SVL+      V +++ +P  L  
Sbjct  553  LMDDQVSDL---------PSCLKAACLHSGMTKKQRESVLKKVRAAQVHVLIVSPEALVG  603

Query  353  LVSTGKLNLSQ------VRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
              + G  +L Q      + F  +DE    LSQ   +F          +         +  
Sbjct  604  CGARGPGSLPQAAQLPPIAFACIDEVH-CLSQWSHNFRPCYLRVCKVLREHMGVRCFLGL  662

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            +AT      + ++ + +      +L G  ++P  +H  V         L   L     RT
Sbjct  663  TATATRSTARDVA-QHLGIAGEFELSGSANIPANLHLSVSMDRDSDQALVTLLQGDRFRT  721

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN-----  521
                                                   +D  II+C T+    N     
Sbjct  722  ---------------------------------------LDSVIIYC-TRERIQNGWLAL  741

Query  522  LEQYFIQQGGG-PDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
            L       G   P   G +      H      ER++  + F +G +R ++ T     G+D
Sbjct  742  LRTCLSMVGDSRPRGCGPEAIAEAYHAGMSSQERRRVQQAFMRGHLRMVVATVAFGMGLD  801

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYN  640
               V  V+++ LP   ++YV  IGR GR  +       +  + E +W             
Sbjct  802  RPDVRAVLHLGLPPSFESYVQAIGRAGRDGKPAHCHLFMHPQGEDLW------------E  849

Query  641  TRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGS  700
             R       T +    +L+  +     C+   V       V E  G+ TY       G +
Sbjct  850  LRRHAHADSTDFLAVKRLVQRVFPPCTCSQRPVSKSSPEEVKEHSGQQTY----PVLGQA  905

Query  701  YKGHVDILA--PTVQELAALEKEAQTSFLHLGYLPNQ  735
              GH   L    TVQ L   E+  +T   +L   P  
Sbjct  906  CLGHERALPVQSTVQALDMTEEAIETLLCYLELHPRH  942


 Score = 46.3 bits (108),  Expect = 0.001, Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (46%), Gaps = 0/59 (0%)

Query  10   MPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETL  68
              E+ QA+E + +      Q  +I  IL G   L+   TG+GK+  + +P +     + 
Sbjct  483  PAEVFQALERLGYRAFRPGQERAIMRILSGISTLLVLPTGAGKSLCYQLPALLYAQRSP  541


>sp|A0A5F9C6I2|RN123_RABIT E3 ubiquitin-protein ligase RNF123 
OS=Oryctolagus cuniculus OX=9986 GN=RNF123 PE=1 SV=2
Length=1314

 Score = 177 bits (448),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 55/205 (27%), Positives = 86/205 (42%), Gaps = 7/205 (3%)

Query  117  KEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLD----LGTDKFGFGFGGTGK  172
              +   R+T  + KGK  YEV    QGL ++GW T+    +    +G     + + G   
Sbjct  119  SNFGTIRSTTCVYKGKWVYEVLISSQGLMQIGWCTINCRFNQEEGVGDTHNSYAYDGNRV  178

Query  173  KSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACV  232
            +  N    NYG+ +   D + C +D+D G + F  NG  LG AFE        A FPA  
Sbjct  179  RKWNVTTTNYGKAWAAGDIVSCLIDLDDGTLSFCLNGVSLGTAFENLSRGLGMAYFPAIS  238

Query  233  LKNAE-LKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQH-SGNAQVTQTKFLPNAPKAL  290
            L   E + FNFG    ++P   G+  L   P   + ++Q   G  +   +  L      L
Sbjct  239  LSFKESVAFNFGSRPLRYPVA-GYRPLQDPPCADLTRAQRLLGCFRAVLSVELDPMEGRL  297

Query  291  IVEPSRELAEQTLNNIKQFKKYIDN  315
            + + S E   Q    +     +I +
Sbjct  298  VEKESSEWQLQGQPTVLLTLAHIFH  322


>sp|P52271|Y308_MYCGE Probable ATP-dependent RNA helicase MG308 
OS=Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / 
NCTC 10195 / G37) OX=243273 GN=MG308 PE=3 SV=1
Length=410

 Score = 168 bits (425),  Expect = 2e-44, Method: Composition-based stats.
 Identities = 75/415 (18%), Positives = 145/415 (35%), Gaps = 80/415 (19%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNI  306
            FK  P    + +++   G           ++  +    + P+A+I  P++EL  Q +N +
Sbjct  27   FKLWPFQNIIGIAETGSGKTFAYLLPLLDKINTS---LDQPQAVIFVPTKELQWQIINIL  83

Query  307  KQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRF  366
             + KKY      +        +++ QL                +  L++   L  S+VR+
Sbjct  84   TEIKKY-----FKTFTFATSFSSKAQL----------------IVSLLNEKYLFTSKVRY  122

Query  367  LVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFP  426
            +V DE D  L Q          +   +             SATL +  ++ + ++++   
Sbjct  123  VVFDEIDMFLEQSSIQQWLECVHLFQKAKPL-----FAFFSATLFNQQLQIIKKQVI-NT  176

Query  427  TWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWS  486
              ++L  +  +   V H VV +N +                                   
Sbjct  177  KVINLHPKQWIHPLVKHFVVHLNTEN----------------------------------  202

Query  487  EAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLH  546
                  +    +  +K H+  Q I+FC  +     L Q             +  S   ++
Sbjct  203  ------RFSGLLALLKHHQNQQIIVFCSNQKSLKQLTQLL---------SNNNISFGSIY  247

Query  547  GDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRV  606
            G     ERK N  +     ++ L+ +D+ +RGID++    VI+  LP     Y+HR GRV
Sbjct  248  GSLTYQERKNNFTKATNNKLKLLVVSDLFSRGIDLNYFSVVISWDLPKIDSFYIHRSGRV  307

Query  607  GRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE  661
             R    G +      + +     +  ++G    N  L  +G         Q  ++
Sbjct  308  ARLNSWGRSYLFWNDQNQSKLNKLI-AKGIKFQNVSLTSNGDLKFLTENNQKTTK  361


 Score = 52.1 bits (123),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 19/69 (28%), Positives = 32/69 (46%), Gaps = 7/69 (10%)

Query  7   MGVMPEIAQAVEEMDWLLPTDIQAES---IPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           M     I Q +++   +  T IQ       P      +++  AETGSGKT A+ +P++  
Sbjct  1   MQFSSSIRQFLDKKRIVEFTKIQQAVFKLWPF----QNIIGIAETGSGKTFAYLLPLLDK  56

Query  64  VYETLKDQQ  72
           +  +L   Q
Sbjct  57  INTSLDQPQ  65


>sp|D3ZXK7|RN123_RAT E3 ubiquitin-protein ligase RNF123 OS=Rattus 
norvegicus OX=10116 GN=Rnf123 PE=1 SV=1
Length=1318

 Score = 174 bits (442),  Expect = 6e-44, Method: Composition-based stats.
 Identities = 59/217 (27%), Positives = 93/217 (43%), Gaps = 10/217 (5%)

Query  117  KEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLD----LGTDKFGFGFGGTGK  172
              +   R++  + KGK  YEV    QGL ++GW T+    +    +G     + + G   
Sbjct  117  SNFGTIRSSTCVYKGKWVYEVLISSQGLMQIGWCTINCRFNQEEGVGDTHNSYAYDGNRV  176

Query  173  KSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACV  232
            +  N    NYG+ +   D + C +D+D G + F  NG  LG AFE        A FPA  
Sbjct  177  RKWNVTTTNYGKAWAAGDIVSCLIDLDDGTLSFCLNGVSLGTAFENLSRGLGMAYFPAIS  236

Query  233  LKNAE-LKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQH-SGNAQVTQTKFLPNAPKAL  290
            L   E + FNFG    ++P   GF  L   P   +V++Q   G  Q   +  L      L
Sbjct  237  LSFKESVAFNFGSRPLRYPVA-GFRPLQDPPFADLVRAQRLLGCFQTVLSVELDPVEGRL  295

Query  291  IVEPSRELAEQTLNNIKQFKKYIDN---PKLRELLII  324
            + + S E        +     +I +   P LR++ ++
Sbjct  296  VEKESSEWQLHGQPTVLLTLAHIFHHFAPLLRKVYLV  332


>sp|Q6C3J3|MRH4_YARLI ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 
GN=MRH4 PE=3 SV=1
Length=514

 Score = 169 bits (427),  Expect = 8e-44, Method: Composition-based stats.
 Identities = 75/400 (19%), Positives = 152/400 (38%), Gaps = 69/400 (17%)

Query  245  EEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN--------APKALIVEPSR  296
            E+     +  FV  ++   G  +       + +   +  P+          +++I+ P+ 
Sbjct  149  EKIPVDRQKTFVLAAQTGSGKTLAYLLPLLSDLKDQEKFPSWQLEKHYKTVRSVILVPTL  208

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVST  356
            EL++Q    +KQF++ +    ++      G + ++      N +D++V TP     L  T
Sbjct  209  ELSQQVGQVLKQFEEPLG---IKTFASAFGQSHQEIAKAFNNRLDVLVTTP---QKLQQT  262

Query  357  GKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVK  416
             + NL     LV+DEAD L    + D    + +Q+P++            +AT+    ++
Sbjct  263  REKNLGGATHLVVDEADTLFDTNFIDSTTDVISQMPKLKCAA------FVAATVSKSFLR  316

Query  417  KLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTR  476
            KL          +      ++PD +   VV VN       +++          H++    
Sbjct  317  KL-RSFYPHVVVIAAPRLHAIPDHIRFSVVDVNKAPYYNNKKVALLQALYAISHSQKQKN  375

Query  477  PGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKK  536
                     +                             K     L+++  + G      
Sbjct  376  YVRRVVVFRNR----------------------------KEHIPELKKFLEENG------  401

Query  537  GHQFSCVCLHGDRKPHERKQNLERFKK-----------GDVRFLICTDVAARGIDIHGVP  585
               +    LHG +  HER + +E++              +VR L+ TD+A+RG+D+  + 
Sbjct  402  ---YPVDTLHGKQDLHERNEVVEKYTNMPDAADQTENARNVRVLLTTDIASRGMDMKNLR  458

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            +V+   +P +K +++HR+GR GR  R G        + +K
Sbjct  459  FVVLYDVPFDKTDFIHRVGRTGRFGREGEVYMFTDNQDKK  498


 Score = 47.0 bits (110),  Expect = 5e-04, Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 48/130 (37%), Gaps = 37/130 (28%)

Query  1    MAAFSEMGVMPEIAQAV---------EEMDWLLPTDIQAES-------------------  32
            +++F+E+ + P++   +         ++   + P+ IQ+ +                   
Sbjct  85   ISSFNELKLHPDVRAVLPDVIQLPEHKQDQDIKPSIIQSLAVKIMRQSYTYKQRVKNEGE  144

Query  33   ------IPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLK--DQQEGKKGKTTIKTG  84
                  IP+      VL  A+TGSGKT A+ +P++  + +  K    Q  K  KT     
Sbjct  145  EPTVEKIPVDRQKTFVLA-AQTGSGKTLAYLLPLLSDLKDQEKFPSWQLEKHYKTVRSVI  203

Query  85   ASVLNKWQMN  94
                 +    
Sbjct  204  LVPTLELSQQ  213


>sp|A3LT90|MRH4_PICST ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 
6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=MRH4 PE=3 SV=2
Length=593

 Score = 169 bits (429),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 87/403 (22%), Positives = 161/403 (40%), Gaps = 89/403 (22%)

Query  268  KSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQ----------------FKK  311
            K + S NAQ+ ++         +++ P+ +L EQ  + +++                 K+
Sbjct  226  KYRASRNAQMVKS---------VVLVPTHDLVEQVYSTLERANSIKFDVEKIGANSRLKE  276

Query  312  YIDNP------KLRELLIIGGVAARDQLSV-LENGVDIVVGTPGRLDDL-----VSTGKL  359
            ++  P       L  L    G A +      L+  VD++V TPG+L  L     V+    
Sbjct  277  FLQLPEQNGSLNLSILKWGSGEAHKKLFDRCLKGRVDVLVTTPGKLASLSKLQNVNRPYR  336

Query  360  NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLS  419
             L+ V + VLDEAD L+ + +      +   +P +    K   +I+CSAT+       L+
Sbjct  337  FLNHVEYCVLDEADTLMDESW------IETTMPVIEKFKKLRDLIICSATIPKRFQTTLN  390

Query  420  EKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGA  479
                   + +++                V P   +L +++  S I ++            
Sbjct  391  RIFPTDDSIINI----------------VTPSLHKLPKQIKVSVIDSE------------  422

Query  480  NSPEMWSEAIKILKGEYAVRAIKEHK--MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKG  537
             SP   S+   + +  YA+         + + I+F   K   ++L    + +     +  
Sbjct  423  LSPYHGSKTRALAQALYAITRDGTEPGLVKRVIVFVNKKESVNSLVDTLVNKFSHRPE--  480

Query  538  HQFSCVCLHGDRKPHERKQNLERFK-----------KGDVRFLICTDVAARGIDIHGVPY  586
                 + + G+ KP ER + LE F               ++ L+ +D+ ARG++  G+  
Sbjct  481  ---DVIGITGEDKPEERSEKLEPFIKPAESIEEDPLNSKIKVLVTSDLMARGVNFVGIKN  537

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            VI + +P    + VHRIGR GR  + G  I +V  +K K W  
Sbjct  538  VIIMDIPHNSVDLVHRIGRTGRMNQSGRVILIVDKKKNKAWLS  580


>sp|Q5UQD1|YR458_MIMIV Putative ATP-dependent RNA helicase R458 
OS=Acanthamoeba polyphaga mimivirus OX=212035 GN=MIMI_R458 
PE=3 SV=1
Length=524

 Score = 167 bits (424),  Expect = 2e-43, Method: Composition-based stats.
 Identities = 78/438 (18%), Positives = 143/438 (33%), Gaps = 104/438 (24%)

Query  240  FNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQT------KFLPNAPKALIVE  293
            F  G E            L +  D  I     +G                 +  + + + 
Sbjct  110  FAKGYESPSEIQALVVPELIQRKDTLIQFKSGTGKTHAFLFGCLWGFDPDDDVLQYIFIT  169

Query  294  PSRELAEQTLNNIKQFKKYIDNPKLRELLIIG-----------------GVA--------  328
             S E+A Q          ++     +  L IG                 G +        
Sbjct  170  SSHEVATQIYEQAV----FLLPETAKIALCIGQKKSPNSFGNSGFKTPIGTSSLNHKPKS  225

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGK--LNLSQVRFLVLDEADGLLS---------  377
             +++   +     I++ T GR  D++           ++ + +DE D +++         
Sbjct  226  IKEEREEIRQ-AQIIICTMGRFYDILCNKGWITTTRYLKAICVDEFDNIVASKTKQRSST  284

Query  378  -QGYSDFINRMHNQIPQVTSDGKR--LQVIVCSATLHSFDVKKLSEKIMHF-------PT  427
                 D +  +  +I            Q +  SAT+  + + K++             P 
Sbjct  285  VMNTEDQMAEIIQKIESEAPKNSENGAQRVFFSATVSPYAI-KIANSYFRKYSPIIGEPF  343

Query  428  WVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSE  487
             V L  ED   + +    V  +   +                                  
Sbjct  344  IVLLDSEDYTLEGIRQYYVQCSNYFE----------------------------------  369

Query  488  AIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHG  547
                 K E  +  +K+ ++ QAIIF       + +++   +Q           S    HG
Sbjct  370  -----KKEIILDLLKQCRIAQAIIFANRIETANEIKKLLDEQ-------EVPISSAVFHG  417

Query  548  DRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVG  607
            D     RK   + F +  +R LI TD+ +RG+D+ G+  V N  +PD  + Y+HR+GR G
Sbjct  418  DLPAVTRKNIHKDFVENKIRLLISTDLTSRGLDVQGINVVFNFDMPDTLETYIHRVGRSG  477

Query  608  RAERMGLAISLVATEKEK  625
            R  R G++ISL+   + K
Sbjct  478  RYGRKGVSISLILVNQNK  495


 Score = 55.5 bits (132),  Expect = 1e-06, Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             +F+E      + +      +  P++IQA  +P ++   D L+  ++G+GKT AF    +
Sbjct  99   KSFAE-----HLIRKTFAKGYESPSEIQALVVPELIQRKDTLIQFKSGTGKTHAFLFGCL  153


>sp|Q59S59|MRH4_CANAL ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 
GN=MRH4 PE=3 SV=2
Length=555

 Score = 168 bits (426),  Expect = 2e-43, Method: Composition-based stats.
 Identities = 81/402 (20%), Positives = 147/402 (37%), Gaps = 78/402 (19%)

Query  267  VKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQ--------------FKKY  312
            ++   S       T+      K++I+ P+ EL +Q    +++              F  +
Sbjct  180  MEFWKSDPEGYDNTRKKGQFVKSVILLPTNELVDQVYETLQRANSFELDHKGAPGNFTSF  239

Query  313  IDNPKLRELLIIG-----GVAARDQLSVLEN--GVDIVVGTPGRLDDL-----VSTGKLN  360
            ++ P+ + + I       G A       LE    +D+++ TPG++        ++     
Sbjct  240  LELPENKTMNITTMKLGQGEAPVRLFRQLETKGPIDVLITTPGKIVAFSKLVNINRPFRV  299

Query  361  LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
             + V++ VLDEAD L    +      +    P      K L +I+ SAT+     KKLS+
Sbjct  300  FANVKYCVLDEADTLFDDSFEKNTTDVITHFP------KLLDLILVSATIPKVFEKKLSK  353

Query  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480
                                             R   R+    +     + K  T     
Sbjct  354  LF----------------------------PDQRSLIRVATPSLHKVPRNIKVMTIDADV  385

Query  481  SPEMWSEAIKILKGEYAV--RAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGH  538
            +P   S+   + +  YA+     +   + + I+F   K + D + +  I +     +   
Sbjct  386  APYNGSKPRCLAQALYAISKDGTEPGYVKRIIVFVNEKSEVDGIVESMITKYKVRPEDIV  445

Query  539  QFSCVCLHGDRKPHERKQNLERFKK-----------GDVRFLICTDVAARGIDIHGVPYV  587
              S     G     +RK  L+ F +             V+ L+ TD+ ARG++  GV  V
Sbjct  446  GVS-----GSVNIRDRKDMLQPFLQPAELIENDDFGSKVKILVTTDLLARGLNFQGVKNV  500

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            I + LP    + VHR+GR GR  + G    +V  + +K W  
Sbjct  501  ILLGLPRNSVDLVHRLGRTGRMNQNGRVFVIVDKKSKKSWVK  542


 Score = 42.4 bits (98),  Expect = 0.016, Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 52/159 (33%), Gaps = 58/159 (36%)

Query  1    MAAFSEMGVMPEIAQA-VEEMDWL----------------LPTDIQAESIPLI-------  36
            + +F ++ + P + +A ++E+                    PT +Q  +I  I       
Sbjct  63   ITSFDQLKIFPSVREAMIKEIKSQYNLKGPRHSNIDEIDIKPTPVQIAAIRKINQTRKLK  122

Query  37   -----LGGGD--------------------VLMAAETGSGKTGAFSIPVIQIV----YET  67
                 L G D                      +AAETGSGKT ++  P++  +     E 
Sbjct  123  VPNKDLEGMDDAERIQFELQNANEIQKTKVFTVAAETGSGKTWSYLAPLLSKLKSDDMEF  182

Query  68   LKDQQEG-----KKGKTTIKTGASVLNKWQMNPYDRGSA  101
             K   EG     KKG+          N+     Y+    
Sbjct  183  WKSDPEGYDNTRKKGQFVKSVILLPTNELVDQVYETLQR  221


>sp|O94712|YC5C_SCHPO Uncharacterized protein C1259.12c OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC1259.12c 
PE=4 SV=2
Length=491

 Score = 166 bits (421),  Expect = 4e-43, Method: Composition-based stats.
 Identities = 57/251 (23%), Positives = 100/251 (40%), Gaps = 39/251 (16%)

Query  27   DIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGAS  86
             I  +++PL L G        T  G+    S P      + L++    ++G  T  T  +
Sbjct  20   PINFDNLPLYLQG--------TNYGENVLRSDPRWLKWEKYLREFDMTREGNVT-NTPKA  70

Query  87   VLNKWQMNPYDRGSAFAIGSDGLCC-----------QSREVKEWHGCRATKGLMKGKHYY  135
            + + W  NP D+  +  + ++ +              +  VK  H   +   +    +YY
Sbjct  71   IPSSW--NPNDKSDSLELMNNNMGVYFFGPEAGTEHDAASVKADHAIPSNTSI----YYY  124

Query  136  EVSCHD---QGLCRVGWST--MQASLDLGTDKFGFGFGGTGKKSHN--KQFDNYGEEFTM  188
            E+       +G   VG+    MQ +   G     +G+ G   +  N  K  + YG EFT 
Sbjct  125  EIQILSRGKEGKMGVGFCRKSMQTNRLPGCTAESWGYHGNSGEKFNCSKTGEAYGPEFTT  184

Query  189  HDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLK--NAELKFNFGEEE  246
             D IGC ++     + ++KNG  LG+AF+      +  L+P   LK     ++ NFG+  
Sbjct  185  GDIIGCGVNFINRTIFYTKNGAYLGVAFKK----VSDVLYPVIGLKSHGEHVEVNFGQNP  240

Query  247  FKFPPKDGFVA  257
            F +        
Sbjct  241  FLYDIDYAIQM  251


>sp|Q6CWQ5|MRH4_KLULA ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 
/ DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=MRH4 
PE=3 SV=1
Length=584

 Score = 167 bits (422),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 75/370 (20%), Positives = 142/370 (38%), Gaps = 38/370 (10%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
             +++I+ P+ EL EQ    + + +  +     +      G + +  +  L+  +DI+V T
Sbjct  229  VRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDA---GSSYKGFVEALKGRIDIMVTT  285

Query  347  PGRLDDLVSTGKLN-----LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL  401
            PG++  L +   +N     LSQV+FLV+DEAD LL + + +        +  +       
Sbjct  286  PGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNH-----  340

Query  402  QVIVCSATLHSFDVKKLSEKI-----MHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLW  456
             V+ CSAT+     K ++        +  P    +  ++ +      +      KT  L 
Sbjct  341  -VLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALA  399

Query  457  ERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK-------EHKMDQA  509
            + L   +    D   +       N  E        L  +Y    +        E ++++ 
Sbjct  400  QILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKI  459

Query  510  IIFC--RTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
              F     K+     E+   +                +  D          E F +  ++
Sbjct  460  KPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDN---------EAFVESTLK  510

Query  568  FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
             L+ TDV ARGI+  G  YV+   +P+   + VHR+GR GR  + G ++ ++  ++ K W
Sbjct  511  VLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG-SVFIITGKRVKNW  569

Query  628  YHVCSSRGKG  637
                 S    
Sbjct  570  VKAIPSIVSK  579


 Score = 52.8 bits (125),  Expect = 9e-06, Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 15/94 (16%)

Query  24   LPTDIQAESI---------PLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQ---  71
             P+ IQ  +I         P  L     L+AAETGSGKT A+ IP++  +  T  +    
Sbjct  164  KPSPIQTTAIYQTSKTLMDPQ-LQVR--LIAAETGSGKTMAYLIPLVDYLKRTEMENPSW  220

Query  72   QEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIG  105
            +  K             ++     Y   S     
Sbjct  221  ETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPA  254


>sp|Q5XPI4|RN123_HUMAN E3 ubiquitin-protein ligase RNF123 OS=Homo 
sapiens OX=9606 GN=RNF123 PE=1 SV=1
Length=1314

 Score = 170 bits (431),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 52/180 (29%), Positives = 78/180 (43%), Gaps = 7/180 (4%)

Query  117  KEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLD----LGTDKFGFGFGGTGK  172
              +   R+T  + KGK  YEV    QGL ++GW T+    +    +G     + + G   
Sbjct  119  SNFGTIRSTTCVYKGKWLYEVLISSQGLMQIGWCTISCRFNQEEGVGDTHNSYAYDGNRV  178

Query  173  KSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACV  232
            +  N    NYG+ +   D + C +D+D G + F  NG  LG AFE        A FPA  
Sbjct  179  RKWNVTTTNYGKAWAAGDIVSCLIDLDDGTLSFCLNGVSLGTAFENLSRGLGMAYFPAIS  238

Query  233  LKNAE-LKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQH-SGNAQVTQTKFLPNAPKAL  290
            L   E + FNFG    ++P   G+  L   P   +V++Q   G  +   +  L      L
Sbjct  239  LSFKESVAFNFGSRPLRYPVA-GYRPLQDPPSADLVRAQRLLGCFRAVLSVELDPVEGRL  297


>sp|Q944S1|RH22_ARATH DEAD-box ATP-dependent RNA helicase 22 OS=Arabidopsis 
thaliana OX=3702 GN=RH22 PE=2 SV=1
Length=581

 Score = 166 bits (420),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 97/556 (17%), Positives = 173/556 (31%), Gaps = 127/556 (23%)

Query  154  ASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLG  213
            +SL+    K+  GF      +   + +  G     +DT           V +    K LG
Sbjct  45   SSLNRSDRKWVRGFAS----ATEAEVEKKG-----NDTF-----FADHTVSW----KSLG  86

Query  214  LAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSG  273
            L+  +   +++       + +   +      ++     + G    S    GY+       
Sbjct  87   LSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETG----SGKTHGYLAPIIDQL  142

Query  274  NAQVTQTKFLPNAPK-------ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGG  326
                  ++      +       +LI+ P+  L EQ +  +        NP LR   + G 
Sbjct  143  TNTALDSEVTNREERPFPLKNISLILCPNVMLCEQVVRMVNGLVDEDGNPLLRVEAVCGS  202

Query  327  VAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN----LSQVRFLVLDEADGLLSQGYSD  382
                D+L       DI+V TP  L + +   +      L  V+++V DEAD LL   + +
Sbjct  203  QGWPDRL------PDIIVSTPAALLNNIEPKRNRRLEFLRCVKYVVFDEADMLLCGSFQN  256

Query  383  FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVD-------LKGED  435
             I R+ N +                       V +L++  +  P  +D       L+ ED
Sbjct  257  QIIRLINMLR-----------------FDEKQVSRLAKSNLGRPMEIDASVPQIDLENED  299

Query  436  SVP-------------------DTVHH---VVVPVNPKTDRLWERLGKSHIRTDDVHAKD  473
                                  D +     V       T + W R+ K + R+       
Sbjct  300  DAEFDEGSISEEEDEEEEEEYLDDIAQMPSVEAEAGSDTKKGWRRVRKIYTRSKQYIFIA  359

Query  474  NTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM---------------------------  506
             T P             + +    V     H+                            
Sbjct  360  ATLPVNGKKTAGGILKHMFQDAVWVSGNFLHRNSPRLKQKWVEVTVDSQVDALIEAVKNN  419

Query  507  -----DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
                 ++ ++F  T    + +             +     C   H + K  ER   L  F
Sbjct  420  NNTNTERTMVFANTVEAVEAVADIL---------EKASIQCYRYHKNHKLDERANILADF  470

Query  562  KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT  621
            ++      +CTD AARG+D+  V +VI         +++HRIGR  RA + G   SL   
Sbjct  471  RE-TGGVFVCTDAAARGVDVPNVSHVIQADFASSAVDFLHRIGRTARAGQYGTVTSLYTE  529

Query  622  EKEKVWYHVCSSRGKG  637
                +   +  +   G
Sbjct  530  ANRDLVEAIREAVKMG  545


 Score = 91.7 bits (226),  Expect = 6e-18, Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 43/80 (54%), Gaps = 0/80 (0%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            ++  +G+   ++ A+ +  +  P+  QA  IP IL G DV++AAETGSGKT  +  P+I 
Sbjct  81   SWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIID  140

Query  63   IVYETLKDQQEGKKGKTTIK  82
             +  T  D +   + +    
Sbjct  141  QLTNTALDSEVTNREERPFP  160


>sp|P53166|MRH4_YEAST ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 
OX=559292 GN=MRH4 PE=1 SV=1
Length=561

 Score = 165 bits (418),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 76/390 (19%), Positives = 147/390 (38%), Gaps = 32/390 (8%)

Query  266  IVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
             +K Q     ++ +T       +++I+ P+ EL +Q    + + K  +     +      
Sbjct  181  YLKRQELETPELWETLRKNVLIRSIILVPTHELVDQVYETVSKTKTLLGLNSFK---WDK  237

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDD-----LVSTGKLNLSQVRFLVLDEADGLLSQGY  380
              + RD L  ++N +DI+V TPG+L +     +++     LS+V F+VLDEAD LL + +
Sbjct  238  ATSYRDLLENIKNRIDILVTTPGKLLNLFSIRMITRPDKVLSKVGFVVLDEADTLLDRSW  297

Query  381  SDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDT  440
             +  +    +IP +        +I CSAT+   +  K  +++      +       +P  
Sbjct  298  LEETHSAIKRIPNINH------LIFCSATIP-QEFNKTMQRLFPTVVPIMTPRLHKLPFA  350

Query  441  VHHVVVPV------NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG  494
            +   V+          K   L + L        +   +       N  +   E + +L  
Sbjct  351  LDFKVINSALSPFKGSKIKALAQTLYAISNDDTEPGFEKRCIIFVNEKKNVPEIVNLLNK  410

Query  495  EYAVRAIK-------EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHG  547
            ++   AI        E + ++ + F         +            K     S + + G
Sbjct  411  KFGHNAIGLTGEDTFEERSEKIMPFLSPPRPLSEVVAQSTSPPTSLKKFEIPDSNIVI-G  469

Query  548  DRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVG  607
              K               +  L+ TD+ ARG++  GV  V+   +P    + +HR+GR  
Sbjct  470  KLKNTNSNGT--APSNKSLHVLVTTDLMARGLNFKGVRNVVLYDVPKTSIDLIHRVGRTA  527

Query  608  RAERMGLAISLVATEKEKVWYHVCSSRGKG  637
            R  + G  + ++   K K W        K 
Sbjct  528  RM-KQGGRVFMLTDSKTKSWAKALPKIIKK  556


 Score = 54.0 bits (128),  Expect = 4e-06, Method: Composition-based stats.
 Identities = 27/129 (21%), Positives = 50/129 (39%), Gaps = 30/129 (23%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLL----------------PTDIQAESIPLILGGGDVL-  43
            ++ F ++ ++P +  AV+E+                    P+ IQ  +I  I    +++ 
Sbjct  97   ISNFDQLLILPPVRDAVKEIISKESLKLQDSRKKTSENIIPSPIQTVAIKRI--SKNLMD  154

Query  44   -------MAAETGSGKTGAFSIPVIQIVYETLKDQQE----GKKGKTTIKTGASVLNKWQ  92
                   +AAETGSGKT A+ IP+I  +     +  E     +K            ++  
Sbjct  155  PKLQIHAIAAETGSGKTMAYLIPLIDYLKRQELETPELWETLRKNVLIRSIILVPTHELV  214

Query  93   MNPYDRGSA  101
               Y+  S 
Sbjct  215  DQVYETVSK  223


>sp|A6ZUB2|MRH4_YEAS7 ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 
GN=MRH4 PE=3 SV=1
Length=561

 Score = 165 bits (418),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 76/390 (19%), Positives = 147/390 (38%), Gaps = 32/390 (8%)

Query  266  IVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG  325
             +K Q     ++ +T       +++I+ P+ EL +Q    + + K  +     +      
Sbjct  181  YLKRQELETPELWETLRKNVLIRSIILVPTHELVDQVYETVSKTKTLLGLNSFK---WDK  237

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDD-----LVSTGKLNLSQVRFLVLDEADGLLSQGY  380
              + RD L  ++N +DI+V TPG+L +     +++     LS+V F+VLDEAD LL + +
Sbjct  238  ATSYRDLLENIKNRIDILVTTPGKLLNLFSIRMITRPDKVLSKVGFVVLDEADTLLDRSW  297

Query  381  SDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDT  440
             +  +    +IP +        +I CSAT+   +  K  +++      +       +P  
Sbjct  298  LEETHSAIKRIPNINH------LIFCSATIP-QEFNKTMQRLFPTVVPIMTPRLHKLPFA  350

Query  441  VHHVVVPV------NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG  494
            +   V+          K   L + L        +   +       N  +   E + +L  
Sbjct  351  LDFKVINSALSPFKGSKIKALAQTLYAISNDDTEPGFEKRCIIFVNEKKNVPEIVNLLNK  410

Query  495  EYAVRAIK-------EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHG  547
            ++   AI        E + ++ + F         +            K     S + + G
Sbjct  411  KFGHNAIGLTGEDTFEERSEKIMPFLSPPRPLSEVVAQSTSPPTSLKKFEIPDSNIVI-G  469

Query  548  DRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVG  607
              K               +  L+ TD+ ARG++  GV  V+   +P    + +HR+GR  
Sbjct  470  KLKNTNSNGT--APSNKSLHVLVTTDLMARGLNFKGVRNVVLYDVPKTSIDLIHRVGRTA  527

Query  608  RAERMGLAISLVATEKEKVWYHVCSSRGKG  637
            R  + G  + ++   K K W        K 
Sbjct  528  RM-KQGGRVFMLTDSKTKSWAKALPKIIKK  556


 Score = 54.0 bits (128),  Expect = 4e-06, Method: Composition-based stats.
 Identities = 27/129 (21%), Positives = 50/129 (39%), Gaps = 30/129 (23%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLL----------------PTDIQAESIPLILGGGDVL-  43
            ++ F ++ ++P +  AV+E+                    P+ IQ  +I  I    +++ 
Sbjct  97   ISNFDQLLILPPVRDAVKEIISKESLKLQDSRKKTSENIIPSPIQTVAIKRI--SKNLMD  154

Query  44   -------MAAETGSGKTGAFSIPVIQIVYETLKDQQE----GKKGKTTIKTGASVLNKWQ  92
                   +AAETGSGKT A+ IP+I  +     +  E     +K            ++  
Sbjct  155  PKLQIHAIAAETGSGKTMAYLIPLIDYLKRQELETPELWETLRKNVLIRSIILVPTHELV  214

Query  93   MNPYDRGSA  101
               Y+  S 
Sbjct  215  DQVYETVSK  223


>sp|Q0JFN7|RH58_ORYSJ DEAD-box ATP-dependent RNA helicase 58, 
chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0970600 
PE=2 SV=2
Length=438

 Score = 161 bits (408),  Expect = 8e-42, Method: Composition-based stats.
 Identities = 73/394 (19%), Positives = 142/394 (36%), Gaps = 55/394 (14%)

Query  259  SKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKL  318
            ++   G  +    S     +   F  ++ +AL+V P+REL  Q     +           
Sbjct  85   AQTGSGKTLAYLLSV---FSAIDFGRSSVQALVVVPTRELGMQVTKVARILAA---KACT  138

Query  319  RELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQ  378
               L+ GG+  R +  V      I+V T   L  ++     +L  +R LV+DE D +   
Sbjct  139  VMALLDGGMLRRQKSWVKAEPPAIIVATVASLCQMIEKRAFSLQSMRVLVIDEVDFIF--  196

Query  379  GYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVP  438
            G S  ++ +   +   ++     Q I  SA++   +      + +H      ++ + +  
Sbjct  197  GSSKQVSSLRKILTSYSAASS-RQTIFASASIPQHN------RFVHD----CVQHKWTKT  245

Query  439  DTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAV  498
            D VH  V PV P    L  +                          ++   K  +    +
Sbjct  246  DVVHVHVNPVQPMPSHLQHK--------------------------YAICSKKERLHVLL  279

Query  499  RAIKEHKMDQAIIFC-----RTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
              +++      IIF      ++K          + +       G     + L  D   + 
Sbjct  280  SLLEKDAPKSGIIFVAEQSEKSKKAGHPPSTTVVVEFLRTTYMG-SLEVLLLEEDMNFNA  338

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR--AER  611
            R  +    K G    L+ TD+A+RG D+    ++ N  LP    +Y+HR GR GR    +
Sbjct  339  RATSFTEVK-GKGFLLVSTDIASRGFDLPQTSHIYNFDLPKTAIDYLHRAGRTGREPFSK  397

Query  612  MGLAI-SLVATEKEKVWYHVCSSRGKGCYNTRLK  644
            +  ++ +L+  ++  V     +     C    ++
Sbjct  398  LACSVTTLITEDEHFVLQRFQNELKFHCEELPVE  431


 Score = 74.4 bits (181),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 46/87 (53%), Gaps = 11/87 (13%)

Query  9    VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETL  68
            V   + Q  EE+ +++PT++Q +S+P++L G D ++ A+TGSGKT A+ + V   +    
Sbjct  48   VPEHVLQRAEEVGYVVPTEVQEQSLPVLLSGQDCILHAQTGSGKTLAYLLSVFSAID---  104

Query  69   KDQQEGKKGKTTIKTG-ASVLNKWQMN  94
                    G+++++        +  M 
Sbjct  105  -------FGRSSVQALVVVPTRELGMQ  124


>sp|A5DR68|MRH4_PICGU ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 
566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 
GN=MRH4 PE=3 SV=2
Length=573

 Score = 164 bits (414),  Expect = 1e-41, Method: Composition-based stats.
 Identities = 77/388 (20%), Positives = 149/388 (38%), Gaps = 84/388 (22%)

Query  287  PKALIVEPSRELAEQTLNNIK---------------------QFKKYIDNPK------LR  319
             +AL+V P+ EL +Q  N ++                     ++ +++  P       L 
Sbjct  212  IRALVVLPTHELVDQVYNTLRSANDQKFATDEVVDPKLLSDAKYARFLKAPDQLNGLHLN  271

Query  320  ELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN-----LSQVRFLVLDEADG  374
                  G + R     ++  VD++V TPG++  L     ++      + V++ V+DEAD 
Sbjct  272  IKKFGAGDSHRVLFDGIKQRVDVLVTTPGKIQGLAKLQNVDRPFRFFNHVQYCVVDEADT  331

Query  375  LLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE  434
            L+   + D    +  ++ +         ++ CSAT+     + LS+      + + +   
Sbjct  332  LMDNSWVDDTTAVLRRLTKCKD------LVFCSATIPKQFNRTLSKMFPDEKSIIHINT-  384

Query  435  DSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG  494
             ++      +VV +                                SP   S+   + + 
Sbjct  385  PALHKIPRQIVVKI---------------------------IDAQVSPYNGSKTRCLAQA  417

Query  495  EYAVR--AIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPH  552
             YA+     +   + + ++F   K D   L    +++ G   +       V + GD KP 
Sbjct  418  LYAIHNDGTEAGYVKRILVFVNEKKDVAPLVDVLVKKYGNRAE-----DIVGITGDTKPE  472

Query  553  ERKQNLERFKK-----------GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH  601
            ERK  LE F K             ++ L+ TD+ ARG++  G+  VI + LP+   + +H
Sbjct  473  ERKGLLEPFLKPAELVEDDIDQSKIKVLVTTDLMARGMNFVGIKNVILMDLPNTSVDLMH  532

Query  602  RIGRVGRAERMGLAISLVATEKEKVWYH  629
            R+GR GR  + G    ++  +  K W  
Sbjct  533  RVGRTGRMRQSGRVFVIIDKKTGKSWIK  560


 Score = 40.5 bits (93),  Expect = 0.055, Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 47/142 (33%), Gaps = 47/142 (33%)

Query  1    MAAFSEMGVMPEIAQAV-----EEMDWL------------LPTDIQAESIPLILGGGDV-  42
            +++FS + + P +  A+        ++              P+ +Q  +I  I    ++ 
Sbjct  78   ISSFSSLRIFPTVRAAMVQEIKRGYNFKNTYMASKDDLEIKPSPVQVAAIRKINQPRNIK  137

Query  43   -----------------------------LMAAETGSGKTGAFSIPVIQIVYETLKDQQE  73
                                          +AAETGSGKT A++ P++  + E   +   
Sbjct  138  STKSRTPQSGAEIFSELMAQNDAKRLKVFTIAAETGSGKTWAYTAPMLTKLKEEDMELFN  197

Query  74   GKKGKTTIKTGASVLNKWQMNP  95
              +        A ++    + P
Sbjct  198  ISEATYAEAKAAPIIRALVVLP  219


>sp|P30957|RYR2_RABIT Ryanodine receptor 2 OS=Oryctolagus cuniculus 
OX=9986 GN=RYR2 PE=1 SV=3
Length=4969

 Score = 167 bits (423),  Expect = 2e-41, Method: Composition-based stats.
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 10/194 (5%)

Query  59    PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKE  118
             P +  V  TL D +  K  K +++     L  +  N        A  ++ +C  + E   
Sbjct  1030  PRL--VPYTLLDDRTKKSNKDSLREAVRTLLGYGYNLEAPDQDHAARAE-VCSGTGERFR  1086

Query  119   WHGCRATKGLMKGKHYYEVSCHDQGLCRVGWST--MQASLDLGTDKFGFGFGGTGKKSHN  176
                   T  +  G+ Y+E      G  RVGWS    Q   +LG+D+  F F G   +  +
Sbjct  1087  IFRAEKTYAVKAGRWYFEFEAVTSGDMRVGWSRPGCQPDQELGSDERAFAFDGFKAQRWH  1146

Query  177   KQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGK----DLGLAFEIPPHMKNQALFPACV  232
             +  ++YG  +   D +GC +D+++  + F+ NG+    D G               P C 
Sbjct  1147  QGNEHYGRSWQAGDVVGCMVDMNEHTMMFTLNGEILLDDSGSELAFKDFDVGDGFIPVCS  1206

Query  233   LKNAEL-KFNFGEE  245
             L  A++ + NFG++
Sbjct  1207  LGVAQVGRMNFGKD  1220


 Score = 47.4 bits (111),  Expect = 6e-04, Method: Composition-based stats.
 Identities = 34/155 (22%), Positives = 54/155 (35%), Gaps = 34/155 (22%)

Query  132  KHYYEVSC--------HDQGLCRVGWSTMQA------------SLDLGTDKFGFGFGG--  169
            K YYE+           +    RVGW++ +                +G D F +GF G  
Sbjct  672  KWYYELMVDHTEPFVTAEATHLRVGWASTEGYSPYPGGGEEWGGNGVGDDLFSYGFDGLH  731

Query  170  ----TGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQ  225
                   ++ +    +        D I C LD+    + F  NG+ +   FE      + 
Sbjct  732  LWSGCIARTVSSPNQHLLR---TDDVISCCLDLSAPSISFRINGQPVQGMFENFN--IDG  786

Query  226  ALFPACVLK-NAELKFNFGEE--EFKFPPKDGFVA  257
              FP        +++F  G    EFKF P  G+  
Sbjct  787  LFFPVVSFSAGIKVRFLLGGRHGEFKFLPPPGYAP  821


>sp|A7TE77|MRH4_VANPO ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 
70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / 
UCD 57-17) OX=436907 GN=MRH4 PE=3 SV=1
Length=539

 Score = 161 bits (408),  Expect = 4e-41, Method: Composition-based stats.
 Identities = 75/400 (19%), Positives = 147/400 (37%), Gaps = 96/400 (24%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
             +++I  P+ EL +Q  N +K   K  ++ K        G    + +  L+N +DI++ T
Sbjct  182  IRSVIFLPTHELVDQVYNTVK---KTENDLKFHVYKWDSGTKYPEIVEKLKNRIDILITT  238

Query  347  PGRLDDLVSTGKLN-----LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL  401
            P +L +L +   ++     LS+V+F+VLDEAD LL + + +  +R    +P         
Sbjct  239  PAKLLNLFNIRMISRADRLLSEVKFVVLDEADTLLDKSWVEDTHRAIRSLPNTNH-----  293

Query  402  QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK  461
             ++ CSAT+ + D     E++      +       +P +V   ++  +   +       K
Sbjct  294  -LLFCSATIPN-DFNDTLERLFPNTIPITTPRLHKLPKSVDFKII--DSSINPFKGSKIK  349

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
            +  +T    A D++ PG                             + I+F   K D   
Sbjct  350  ALAQTLYAIANDSSEPGFE--------------------------KRCIVFTNEKKDVPY  383

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF--------------------  561
            + +          K  +   C+ L  +    ER + +  F                    
Sbjct  384  IVEKL--------KVTYGHDCIGLTSNDSVEERLEKIHDFITPPKPITMKKETPKIENED  435

Query  562  ------------------------KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQ  597
                                     +  ++ L+ TD+ ARG++  GV  ++   +P    
Sbjct  436  SVEVEGSNITIGDFSSKTSVKNSNSESSLKVLVSTDLMARGLNFQGVRNLVLYDVPQTSI  495

Query  598  NYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
            + +HR+GR  R ++ G  + ++  +K K W        K 
Sbjct  496  DLIHRVGRTARMQQRGR-VFMITDKKTKSWAKALPKVIKK  534


 Score = 47.8 bits (112),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 53/126 (42%), Gaps = 27/126 (21%)

Query  1    MAAFSEMGVMPEIAQAVE-------------EMDWLLPTDIQ-------AESIP-LILGG  39
            +++F ++ ++PE+  +++             E + ++P+ IQ       + ++    L  
Sbjct  80   LSSFDQLKILPEVRNSIKNIIKDETLSKKAKESEDVIPSPIQLIAMKKLSRTLMDPKLQH  139

Query  40   GDVLMAAETGSGKTGAFSIPVIQIVYETL---KDQQEGKKGKTTIKTGA-SVLNKWQMNP  95
              +  AAETGSGKT A+ IP+   +        +  E  + K  I++      ++     
Sbjct  140  HAI--AAETGSGKTMAYLIPLFDYLKRQETEFPEDWEFMQDKAIIRSVIFLPTHELVDQV  197

Query  96   YDRGSA  101
            Y+    
Sbjct  198  YNTVKK  203


>sp|Q6H601|RH22_ORYSJ DEAD-box ATP-dependent RNA helicase 22 OS=Oryza 
sativa subsp. japonica OX=39947 GN=Os09g0383400 PE=2 
SV=2
Length=577

 Score = 162 bits (409),  Expect = 5e-41, Method: Composition-based stats.
 Identities = 79/484 (16%), Positives = 159/484 (33%), Gaps = 83/484 (17%)

Query  210  KDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKS  269
            + LG++  +   +    L    +++ A +       +     + G    S    GY+V  
Sbjct  85   ESLGVSDRLASALHGAGLARPSLVQAACIPHVLTTNDVIVAAETG----SGKTHGYLVPL  140

Query  270  QHSGNAQV-------TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
                 ++        +Q     +   AL++ P+  L EQ +            P      
Sbjct  141  IEKLCSKSISAEDGNSQDVTSGSPNIALVLCPNVMLCEQVVRMANSLVDESGEPLKSAAA  200

Query  323  IIGGVAARDQLSVLENGVDIVVGTPGRLDDLV-------STGKLNLSQVRFLVLDEADGL  375
            + G               DI+V TP  L + +          +  L  V+F+V DEAD L
Sbjct  201  VCGPKGWP------TVRPDILVATPAALLNYLFDYDPEKRRRERFLRNVKFIVFDEADML  254

Query  376  LSQGYSDFINRMHNQI---------------------PQVTSDGKRLQVIVCSATLHSFD  414
            L   + + + R+ + +                          +    Q    SA L + D
Sbjct  255  LCGSFENQVIRLIHMLRFDEKLLSRMEDSGKEISLGDTNEYREDSDSQ----SAELSADD  310

Query  415  VKKLSEKIMHFPTWVD------------------------LKGEDSVPDTVHHVVVPVNP  450
             +     + H P  V+                        +    ++P +       V  
Sbjct  311  EENEDGLVQHRPVNVENAHIGAHKKDWRRVRKVYRRSKQYVFVAATLPQSGKKTAGGVLK  370

Query  451  KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAI  510
            +       +  +++   +   +          ++ +    +  G        +   ++ +
Sbjct  371  RMFPNAVWVSGAYLHRHNPRLERRWIEVTADTQVSALLDAVKYGLKNEVHDTKLGPNRTM  430

Query  511  IFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLI  570
            +F  T    +++     + G           C+  H D    ER +NL+ F++ +   L+
Sbjct  431  VFTNTVDAANSVSDILQRVG---------VPCILYHRDSSLEERAKNLQSFRE-NGGVLV  480

Query  571  CTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
            CTD AARG+D+  V +VI         +++HR+GR  RA + G+  SL       +   V
Sbjct  481  CTDAAARGLDVPNVSHVIQAEFAACAVDFLHRVGRTARAGQSGIVTSLYTEANRDLVRAV  540

Query  631  CSSR  634
              + 
Sbjct  541  RQAE  544


 Score = 83.3 bits (204),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 26/87 (30%), Positives = 44/87 (51%), Gaps = 0/87 (0%)

Query  2    AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
             ++  +GV   +A A+       P+ +QA  IP +L   DV++AAETGSGKT  + +P+I
Sbjct  82   TSWESLGVSDRLASALHGAGLARPSLVQAACIPHVLTTNDVIVAAETGSGKTHGYLVPLI  141

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVL  88
            + +       ++G     T  +    L
Sbjct  142  EKLCSKSISAEDGNSQDVTSGSPNIAL  168


>sp|Q6FJJ8|MRH4_CANGA ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / 
JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=MRH4 
PE=3 SV=1
Length=568

 Score = 161 bits (408),  Expect = 5e-41, Method: Composition-based stats.
 Identities = 82/428 (19%), Positives = 151/428 (35%), Gaps = 100/428 (23%)

Query  261  APDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRE  320
            AP    +K Q     +  ++       +++I+ P+ EL +Q    +       D   +  
Sbjct  185  APLLDYLKRQEIETPEKWESIKDKAIIRSVILVPTLELVDQIYTTLTCI---PDTLGIHV  241

Query  321  LLIIGGVAARDQLSVLENGVDIVVGTPGRLDD-----LVSTGKLNLSQVRFLVLDEADGL  375
                 GV  +  L  L++  DI++ TP +L       ++S   L L ++ F+VLDEAD L
Sbjct  242  HKWTTGVDYQQLLENLKSRTDILITTPSKLLSLQRVRMISRADLILKRIEFVVLDEADTL  301

Query  376  LSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED  435
            L + + +  ++    +  V        +++CSAT+ +   + +++     P  + L    
Sbjct  302  LDKSWLEDTHKALKAMSDVNH------LVLCSATIPNEFDRTMTKMF---PNAIPL----  348

Query  436  SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGE  495
                          P+  +L + +    I              A SP   S+   + +  
Sbjct  349  ------------TTPRLHKLPKGINFRIIN------------AAVSPYKGSKIKALAQTL  384

Query  496  YAVRAIKEHKM--DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
            YA+           + I+F   K + DN+ Q    + G           V L GD +   
Sbjct  385  YAIAYDGTDPGFEKRCIVFINEKKNVDNVVQKLRNEYG--------HDVVGLTGDMEGRT  436

Query  554  RKQNLERFKKG--------------------------------------------DVRFL  569
            R + +  F                                                +R L
Sbjct  437  RLELIRPFISPPEKLTEQEKQIDKDLNDQETVNISGSNISIGNIENSNKASNFIPKLRVL  496

Query  570  ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            + TD+ ARG++  GV  VI   +P    + VHR GR  R  + G  + ++  +K + W  
Sbjct  497  VTTDLLARGLNFKGVRNVILYDVPITAIDLVHRAGRTARMRQSGR-VFMIIDKKTQSWAK  555

Query  630  VCSSRGKG  637
               +  K 
Sbjct  556  AVPTILKK  563


 Score = 50.5 bits (119),  Expect = 5e-05, Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 52/119 (44%), Gaps = 25/119 (21%)

Query  1    MAAFSEMGVMPEIAQ---------AVEEMDWLLPTDIQAESIPLILGGGDVL--------  43
            +  F E+ ++PE+ +         ++   + + P+ IQ  +I  +    +++        
Sbjct  113  ITEFEELKLLPEVRKHVINLIKKDSLNTTEEIHPSPIQTIAIKRL--SKNLMEPKLQVHA  170

Query  44   MAAETGSGKTGAFSIPVIQIVYETL---KDQQEGKKGKTTIKTGASVLNKWQMNPYDRG  99
            +AAETGSGKT A+  P++  +        ++ E  K K  I++   V     +   D+ 
Sbjct  171  IAAETGSGKTMAYCAPLLDYLKRQEIETPEKWESIKDKAIIRSVILVPT---LELVDQI  226


>sp|Q92736|RYR2_HUMAN Ryanodine receptor 2 OS=Homo sapiens OX=9606 
GN=RYR2 PE=1 SV=3
Length=4967

 Score = 166 bits (420),  Expect = 6e-41, Method: Composition-based stats.
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 10/194 (5%)

Query  59    PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKE  118
             P +  V  TL D +  K  K +++     L  +  N        A  ++ +C  + E   
Sbjct  1030  PRL--VPYTLLDDRTKKSNKDSLREAVRTLLGYGYNLEAPDQDHAARAE-VCSGTGERFR  1086

Query  119   WHGCRATKGLMKGKHYYEVSCHDQGLCRVGWST--MQASLDLGTDKFGFGFGGTGKKSHN  176
                   T  +  G+ Y+E      G  RVGWS    Q   +LG+D+  F F G   +  +
Sbjct  1087  IFRAEKTYAVKAGRWYFEFETVTAGDMRVGWSRPGCQPDQELGSDERAFAFDGFKAQRWH  1146

Query  177   KQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGK----DLGLAFEIPPHMKNQALFPACV  232
             +  ++YG  +   D +GC +D+++  + F+ NG+    D G               P C 
Sbjct  1147  QGNEHYGRSWQAGDVVGCMVDMNEHTMMFTLNGEILLDDSGSELAFKDFDVGDGFIPVCS  1206

Query  233   LKNAEL-KFNFGEE  245
             L  A++ + NFG++
Sbjct  1207  LGVAQVGRMNFGKD  1220


 Score = 47.4 bits (111),  Expect = 6e-04, Method: Composition-based stats.
 Identities = 34/155 (22%), Positives = 54/155 (35%), Gaps = 34/155 (22%)

Query  132  KHYYEVSC--------HDQGLCRVGWSTMQA------------SLDLGTDKFGFGFGG--  169
            K YYE+           +    RVGW++ +                +G D F +GF G  
Sbjct  672  KWYYELMVDHTEPFVTAEATHLRVGWASTEGYSPYPGGGEEWGGNGVGDDLFSYGFDGLH  731

Query  170  ----TGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQ  225
                   ++ +    +        D I C LD+    + F  NG+ +   FE      + 
Sbjct  732  LWSGCIARTVSSPNQHLLR---TDDVISCCLDLSAPSISFRINGQPVQGMFENFN--IDG  786

Query  226  ALFPACVLK-NAELKFNFGEE--EFKFPPKDGFVA  257
              FP        +++F  G    EFKF P  G+  
Sbjct  787  LFFPVVSFSAGIKVRFLLGGRHGEFKFLPPPGYAP  821


>sp|B0LPN4|RYR2_RAT Ryanodine receptor 2 OS=Rattus norvegicus 
OX=10116 GN=Ryr2 PE=1 SV=2
Length=4953

 Score = 166 bits (419),  Expect = 7e-41, Method: Composition-based stats.
 Identities = 47/194 (24%), Positives = 83/194 (43%), Gaps = 10/194 (5%)

Query  59    PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKE  118
             P +  V  TL D +  K  K +++     L  +  +        A  ++ +C  + E   
Sbjct  1023  PRL--VPYTLLDDRTKKSNKDSLREAVRTLLGYGYHLEAPDQDHASRAE-VCSGTGERFR  1079

Query  119   WHGCRATKGLMKGKHYYEVSCHDQGLCRVGWST--MQASLDLGTDKFGFGFGGTGKKSHN  176
                   T  +  G+ Y+E      G  RVGWS    Q  L+LG+D+  F F G   +  +
Sbjct  1080  IFRAEKTYAVKAGRWYFEFEAVTAGDMRVGWSRPGCQPDLELGSDERAFAFDGFKAQRWH  1139

Query  177   KQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGK----DLGLAFEIPPHMKNQALFPACV  232
             +  ++YG  +   D +GC +D+++  + F+ NG+    D G               P C 
Sbjct  1140  QGNEHYGRSWQAGDVVGCMVDMNEHTMMFTLNGEILLDDSGSELAFKDFDVGDGFIPVCS  1199

Query  233   LKNAEL-KFNFGEE  245
             L  A++ + NFG++
Sbjct  1200  LGVAQVGRMNFGKD  1213


 Score = 47.0 bits (110),  Expect = 8e-04, Method: Composition-based stats.
 Identities = 35/155 (23%), Positives = 55/155 (35%), Gaps = 34/155 (22%)

Query  132  KHYYEVSC--------HDQGLCRVGWSTMQA------------SLDLGTDKFGFGFGG--  169
            K YYE+           +    RVGW++ +                +G D F +GF G  
Sbjct  665  KWYYELMVDHTEPFVTAEATHLRVGWASTEGYSPYPGGGEEWGGNGVGDDLFSYGFDGLH  724

Query  170  ----TGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQ  225
                   ++ +    +        D I C LD+    + F  NG+ +   FE      + 
Sbjct  725  LWSGCIARTVSSPNQHLLR---TDDVISCCLDLSAPSISFRINGQPVQGMFENFN--IDG  779

Query  226  ALFPACVLK-NAELKFNFGEE--EFKFPPKDGFVA  257
              FP        +++F  G    EFKF P  G+ A
Sbjct  780  LFFPVVSFSAGIKVRFLLGGRHGEFKFLPPPGYAA  814


>sp|E9Q401|RYR2_MOUSE Ryanodine receptor 2 OS=Mus musculus OX=10090 
GN=Ryr2 PE=1 SV=1
Length=4966

 Score = 165 bits (417),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 10/194 (5%)

Query  59    PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKE  118
             P +  V  TL D +  K  K +++     L  +  +        A  ++ +C  + E   
Sbjct  1030  PRL--VPYTLLDDRTKKSNKDSLREAVRTLLGYGYHLEAPDQDHASRAE-VCSGTGERFR  1086

Query  119   WHGCRATKGLMKGKHYYEVSCHDQGLCRVGWST--MQASLDLGTDKFGFGFGGTGKKSHN  176
                   T  +  G+ Y+E      G  RVGWS    Q  L+LG+D   F F G   +  +
Sbjct  1087  IFRAEKTYAVKAGRWYFEFEAVTAGDMRVGWSRPGCQPDLELGSDDRAFAFDGFKAQRWH  1146

Query  177   KQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGK----DLGLAFEIPPHMKNQALFPACV  232
             +  ++YG  +   D +GC +D+++  + F+ NG+    D G               P C 
Sbjct  1147  QGNEHYGRSWQAGDVVGCMVDMNEHTMMFTLNGEILLDDSGSELAFKDFDVGDGFIPVCS  1206

Query  233   LKNAEL-KFNFGEE  245
             L  A++ + NFG++
Sbjct  1207  LGVAQVGRMNFGKD  1220


 Score = 47.0 bits (110),  Expect = 8e-04, Method: Composition-based stats.
 Identities = 35/155 (23%), Positives = 55/155 (35%), Gaps = 34/155 (22%)

Query  132  KHYYEVSC--------HDQGLCRVGWSTMQA------------SLDLGTDKFGFGFGG--  169
            K YYE+           +    RVGW++ +                +G D F +GF G  
Sbjct  672  KWYYELMVDHTEPFVTAEATHLRVGWASTEGYSPYPGGGEEWGGNGVGDDLFSYGFDGLH  731

Query  170  ----TGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQ  225
                   ++ +    +        D I C LD+    + F  NG+ +   FE      + 
Sbjct  732  LWSGCIARTVSSPNQHLLR---TDDVISCCLDLSAPSISFRINGQPVQGMFENFN--IDG  786

Query  226  ALFPACVLK-NAELKFNFGEE--EFKFPPKDGFVA  257
              FP        +++F  G    EFKF P  G+ A
Sbjct  787  LFFPVVSFSAGIKVRFLLGGRHGEFKFLPPPGYAA  821


>sp|Q9SIZ8|RKP_ARATH E3 ubiquitin-protein ligase RKP OS=Arabidopsis 
thaliana OX=3702 GN=RKP PE=2 SV=2
Length=1280

 Score = 164 bits (414),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 56/199 (28%), Positives = 88/199 (44%), Gaps = 20/199 (10%)

Query  119  WHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLD----LGTDKFGFGFGGTGKKS  174
            +   RA   + KGK  YEV+    G+ ++GW+T+         +G     + F G     
Sbjct  135  FSSARANACIWKGKWMYEVALETSGIQQLGWATLACPFTDQKGVGDADDSYAFDGRRVSK  194

Query  175  HNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFE-IPPHMKNQALFPACVL  233
             NK+ + YG+ +   D IGC +D++   + F +NG  LG AF  I         +PA  L
Sbjct  195  WNKEAEPYGQSWVAGDVIGCCIDLNCDEIYFYRNGVSLGAAFTGIRKLGPGFGYYPAISL  254

Query  234  -KNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIV  292
             +    + NFG   FK+P  DGF  L +AP  +   +             L      L+ 
Sbjct  255  SQGERCELNFGAYPFKYPV-DGFQPLQEAPTRFSFAT------------ELLRCFSRLLD  301

Query  293  EPSRELAEQTLNNIKQFKK  311
             P R LA+ TL+ +++F  
Sbjct  302  RPDRSLAD-TLSRLRRFAS  319


>sp|A5E5F7|MRH4_LODEL ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=MRH4 
PE=3 SV=1
Length=603

 Score = 161 bits (406),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 79/460 (17%), Positives = 159/460 (35%), Gaps = 91/460 (20%)

Query  209  GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVK  268
            G+ + +  +     +   +F       +   + +         +D +   +++P+ Y   
Sbjct  183  GERIQIELQTKNEEQKTKIFTVAAETGSGKTWAYLANIMSKLKEDDYKWFNQSPEAY---  239

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI---------------  313
                 + + ++        +++I+ P+ EL EQ    +K+   ++               
Sbjct  240  ----NSFKSSE------QVRSVILLPTHELVEQVYETLKRANSFLLEYENVPLQYKEFLN  289

Query  314  ----DNPKLRELLIIGGVAARDQLSVLENG--VDIVVGTPGRLDDLVSTGKLN-----LS  362
                    L    +  G A  +    L N   +DI++ TPG++        ++       
Sbjct  290  LPEHHTLGLSIAKLSHGDAPINVYKQLRNRGKIDILITTPGKITSFSKLESIDRPFKIFK  349

Query  363  QVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKI  422
             +R+ V+DEAD L    +      +    P      K L +I+ SAT+     K L    
Sbjct  350  SIRYCVIDEADTLFDDSFLKDTTAVVKNFP------KLLDLILVSATIPKEFEKTLLRLF  403

Query  423  MHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSP  482
                + + +                  P   ++ + +    +  D             +P
Sbjct  404  PDQKSLIRV----------------ATPSLHKISKNIKVMTLDAD------------LAP  435

Query  483  EMWSEAIKILKGEYAV--RAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540
               S+   + +  YA+     + + + + IIF   K + D L      +         + 
Sbjct  436  YNGSKTRCLAQAIYAISKDGTEHNHVKRIIIFVNEKAEVDGLVDLLQSK-----YHIRRE  490

Query  541  SCVCLHGDRKPHERKQNLERFKK-----------GDVRFLICTDVAARGIDIHGVPYVIN  589
                + G     +RK  LE F K             ++ L+ TD+ ARG++  G+  VI 
Sbjct  491  DICGISGSVNVGDRKDYLEPFLKPAQLLEDDVDQSKIKILVTTDLLARGMNFIGIKNVIL  550

Query  590  VTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            + LP      VHR+GR GR  ++G    +V  +  K W  
Sbjct  551  MGLPKSSVELVHRLGRTGRMNQLGRVFIIVDKKSRKSWVK  590


>sp|Q6BV94|MRH4_DEBHA ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 
/ BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=MRH4 
PE=3 SV=1
Length=593

 Score = 158 bits (399),  Expect = 1e-39, Method: Composition-based stats.
 Identities = 74/396 (19%), Positives = 148/396 (37%), Gaps = 84/396 (21%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKK---------------------YIDNP------KLR  319
             +++I+ P+ EL EQ  +++K+  K                     Y+  P       L 
Sbjct  232  IRSVILLPTHELVEQVYDSLKRASKASIDLEASVNKKILQDPQYARYLSLPENQTSLNLN  291

Query  320  ELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN-----LSQVRFLVLDEADG  374
             +    G + +         +D++V TP ++  L     ++      + V + V+DEAD 
Sbjct  292  VVKWGSGDSHQKLFDAGRKRIDVLVTTPAKIQGLAKLNNVSRPFRLFNFVEYCVVDEADT  351

Query  375  LLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE  434
            L+ + +      +  ++ +         +I CSAT+     K L +      + +++   
Sbjct  352  LMDKSWIVDTTSVIRRLSKCKD------LIFCSATIPKEFKKTLGKMFPDEFSIINI---  402

Query  435  DSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG  494
                         V P   ++ +++    I                SP   S+   + + 
Sbjct  403  -------------VTPSLHKIPKQINLKVI------------DAQLSPYNGSKTRCLAQA  437

Query  495  EYAVR--AIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPH  552
             YA+     ++  + + ++F   K D   L    I++ G  ++       + + G     
Sbjct  438  LYAIHNDGTEQGYVKRILVFVNEKRDVQPLADTLIEKFGHREE-----DIIGITGADNAD  492

Query  553  ERKQNLERFKK-----------GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH  601
            +R   +E F K             V+ LI TD+ ARG++ +G+  VI + LP+   + VH
Sbjct  493  DRLAKIEPFLKPAELLEEDLDGSKVKVLITTDLLARGLNFNGIKNVILMDLPNTSVDLVH  552

Query  602  RIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
            R+GR GR  + G    ++  +  K W        K 
Sbjct  553  RVGRTGRMRQSGRVFVIIDKKTGKSWIKGLPKVIKK  588


 Score = 42.8 bits (99),  Expect = 0.010, Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 54/170 (32%), Gaps = 59/170 (35%)

Query  1    MAAFSEMGVMPEIAQA-VEEMDW----------------LLPTDIQAESIPLI-------  36
            + +F  + + P +  A +EE+ +                + P+ +Q  +I  I       
Sbjct  94   ITSFESLRIFPTVRSAMLEEIKYGYNLKSTYIKSKEELEIKPSPVQIAAIRKINQPRLRN  153

Query  37   -----------LGGGDVL----------------MAAETGSGKTGAFSIPVIQIVYE---  66
                         G ++L                +AAETGSGKT A+  P++  + E   
Sbjct  154  VNAEKKLADKKASGQEILEDLQKSNEMNRLKIFTIAAETGSGKTWAYLAPLLSKLKEEDM  213

Query  67   -----TLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
                 + +   + KK            ++     YD     +  S  L  
Sbjct  214  RVFNMSEQSYADAKKTSIIRSVILLPTHELVEQVYDSLKRASKASIDLEA  263


>sp|Q9FVV4|RH55_ARATH DEAD-box ATP-dependent RNA helicase 55 OS=Arabidopsis 
thaliana OX=3702 GN=RH55 PE=3 SV=1
Length=465

 Score = 154 bits (388),  Expect = 6e-39, Method: Composition-based stats.
 Identities = 66/310 (21%), Positives = 117/310 (38%), Gaps = 80/310 (26%)

Query  276  QVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
            +       P+    +I+ P+REL+ Q     +  +  +D  K RE+         D  ++
Sbjct  81   RSNSYPPKPHQVMGVIISPTRELSAQIHKVARAVR--LDFAKCREV-------EADMNTL  131

Query  336  LENGVDIVVGTPGRLDDLVSTGK-LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV  394
             E G ++++GTPGRL D++   + L+   +  L+LDEAD LL  G+   +N + +++P  
Sbjct  132  EEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLP--  189

Query  395  TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDR  454
                K+ +  + SAT  +  V  L++  +  P ++  + +      VH ++   N K   
Sbjct  190  ----KQRRTGLFSAT-QTQAVADLAKAGLRNP-YLKCEADQKSSQLVHLLIENKNKKLVV  243

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
             +                                +     +Y    I +    ++I F  
Sbjct  244  FF--------------------------------MTCACVDYWGLVISKIPSLKSISFFP  271

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
            T                              HG      R   L  F +     L+CTDV
Sbjct  272  T------------------------------HGKMDQKGRDTALASFTEASSGVLLCTDV  301

Query  575  AARGIDIHGV  584
            AARG+DI G+
Sbjct  302  AARGLDIPGI  311


 Score = 90.2 bits (222),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 47/96 (49%), Gaps = 5/96 (5%)

Query  4    FSEM--GVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            FSE+   +  +I +A++   + + T +QAE+IP +    DV++ A TGSGKT AF +P I
Sbjct  17   FSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFI  76

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYD  97
            +I+    +      K    +    S   +     + 
Sbjct  77   EII---RRSNSYPPKPHQVMGVIISPTRELSAQIHK  109


>sp|Q7SFC8|ROK1_NEUCR ATP-dependent RNA helicase rok1 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=drh-16 PE=3 SV=1
Length=781

 Score = 157 bits (398),  Expect = 7e-39, Method: Composition-based stats.
 Identities = 79/366 (22%), Positives = 125/366 (34%), Gaps = 40/366 (11%)

Query  339  GVDIVVGTPGRLDDLVSTG----------KLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
             VDI+V TP  L + +  G          K  L  V+ L+LDEAD LL   +      + 
Sbjct  393  RVDILVTTPKILLNFLCGGEKEKGKPRIIKKTLPTVQSLILDEADVLLDPIFRKQTMGIW  452

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
                        L +   SAT+ S     L++ I           E +    +  VV   
Sbjct  453  RAC-----THPNLGMTCWSATMASNIEALLTKHIDKRAKR---TPEQTPKPLIRLVVGLK  504

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
            +     +  +L  +      + A        +S +                         
Sbjct  505  DTAVPNITHKLIYTATEPGKLLALRQLLHPVSSADSGPPLRPPF----------------  548

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
             ++F +T      L      +   P + G       LH       R + + RF+ G+V  
Sbjct  549  -LVFTQTIERAQALHDEL--KYDIPLEAGGSARVAVLHSSLPDSVRSKIMARFRSGEVWV  605

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM-GLAISLVATEKEKVW  627
            LI TDV ARG+D  GV  V+N  +P     YVHR GR GRA R  G+A++    +     
Sbjct  606  LITTDVLARGVDFAGVNGVVNYDVPVSAAAYVHRAGRTGRAGREGGVAVTFYTKDDIPFV  665

Query  628  YHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGK  687
              V +             D   T+   +  +   + + L       E   K+ V   + +
Sbjct  666  KSVANVIAMSEKQAGKDIDEKDTVKAAQGSVQKWLLDALPKVAK--EDKRKLKVRGVESR  723

Query  688  VTYGQK  693
             T G+ 
Sbjct  724  RTGGKA  729


 Score = 75.2 bits (183),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 23/130 (18%)

Query  1    MAAFSEM----GVMPEIAQAVEEMDWLLPTDIQAESIPLIL------------------G  38
            + +F E+    G+ P +A  +    + +PT++Q  S+PL L                   
Sbjct  179  LNSFGELKYTYGIHPVLADNITRQGFRVPTEVQMGSLPLQLRPEMALEKATDVEDVKVEK  238

Query  39   GGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGAS-VLNKWQMNPYD  97
            G D L  A TGSGKT +F IP I  + +   +    +  +  ++        +      +
Sbjct  239  GIDFLGVAPTGSGKTISFLIPAIDAIIKRRAEDYTPETDEHVLQAIVVAPTRELASQIVN  298

Query  98   RGSAFAIGSD  107
             G   AIG+ 
Sbjct  299  EGRKLAIGTG  308


 Score = 45.9 bits (107),  Expect = 0.001, Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 40/115 (35%), Gaps = 11/115 (10%)

Query  215  AFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN  274
             F +P         P  +     L+     E+ K      F+ ++    G  +       
Sbjct  203  GFRVPTE-VQMGSLPLQLRPEMALEKATDVEDVKVEKGIDFLGVAPTGSGKTISFLIPAI  261

Query  275  AQVTQTKFLPNAP-------KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
              + + +     P       +A++V P+RELA Q +N  ++         +R +L
Sbjct  262  DAIIKRRAEDYTPETDEHVLQAIVVAPTRELASQIVNEGRKLA---IGTGVRVVL  313


>sp|Q755C5|MRH4_EREGS ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 
/ FGSC 9923 / NRRL Y-1056) OX=284811 GN=MRH4 PE=3 SV=1
Length=554

 Score = 153 bits (387),  Expect = 3e-38, Method: Composition-based stats.
 Identities = 74/402 (18%), Positives = 135/402 (34%), Gaps = 96/402 (24%)

Query  269  SQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
             Q    A   + +    A ++LI+ P+ EL EQ    +++ ++ +   +L+   +     
Sbjct  182  KQEEQAAGTEEGRARLGALRSLILVPTHELVEQVYMTLEKLQEPL---QLKTFKLDRDTP  238

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN-----LSQVRFLVLDEADGLLSQGYSDF  383
             +D +   +  VDI+V TPG+L  L     L+     LSQVRF V+DEAD L+ Q +   
Sbjct  239  YKDIVEAFKGRVDIMVTTPGKLRGLFKIRMLHRPDRILSQVRFAVVDEADTLMDQSWVQE  298

Query  384  INRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHH  443
                   +           ++ CSA++   + +K   K+                     
Sbjct  299  TYSCIKSLRDANH------LVFCSASVP-MEFEKAMNKLFPN------------------  333

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAV--RAI  501
                         + +    +   + H+       A  P   S+   + +  YA+     
Sbjct  334  ------------LQVVASEKLHRINKHSNIKIINVALRPYNGSKMKALAQALYAIMKDGT  381

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
             E    + ++F       +++      + G             L G+    +R   +  F
Sbjct  382  SEGYEKRCVVFVNEADSVNSIVDTLRDKFG--------HDVHGLTGEHSLDDRLATIAPF  433

Query  562  KKGDVRF-----------------------------------------LICTDVAARGID  580
             +   R                                          L+ TDV +RGI+
Sbjct  434  MRSPPRIQDQVRPSELKKPQERRLPNSNIKVADSKDNGQRSVSSPLKVLVTTDVLSRGIN  493

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
              GV +VI   +P +  + VHR+GR  R    G     V  +
Sbjct  494  FKGVKHVILYDVPAKSIDLVHRVGRTSRMNERGHVYIFVGKK  535


 Score = 50.5 bits (119),  Expect = 5e-05, Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 54/154 (35%), Gaps = 22/154 (14%)

Query  5    SEMGVMPEIAQAVEEMDWLLPTDIQAESI---------PLILGGGDVLMAAETGSGKTGA  55
             + G+  +   A   +  + PT IQ   I         P  L     ++AAETGSGKT +
Sbjct  118  EDCGLDDKRVAAF--LGQVQPTPIQTAVIKKMAKTLMEPQ-LQVH--MVAAETGSGKTMS  172

Query  56   FSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSRE  115
            + +P++  +      Q+E   G    +     L    + P          +     +  +
Sbjct  173  YLMPLVDYL-----KQEEQAAGTEEGRARLGALRSLILVPTHELVEQVYMTLEKLQEPLQ  227

Query  116  VKEWHGCRATK---GLMKGKHYYEVSCHDQGLCR  146
            +K +   R T     +   K   ++     G  R
Sbjct  228  LKTFKLDRDTPYKDIVEAFKGRVDIMVTTPGKLR  261


>sp|Q8VDM6|HNRL1_MOUSE Heterogeneous nuclear ribonucleoprotein 
U-like protein 1 OS=Mus musculus OX=10090 GN=Hnrnpul1 PE=1 
SV=1
Length=859

 Score = 156 bits (393),  Expect = 4e-38, Method: Composition-based stats.
 Identities = 63/201 (31%), Positives = 100/201 (50%), Gaps = 29/201 (14%)

Query  97   DRGSAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCH-------------DQG  143
            DR S + +  +G          W G RA+ G+ +G+  +E+  +             D  
Sbjct  228  DRSSGYPLTIEGFAYL------WSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPH  281

Query  144  LCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKG--  201
            + R+GWS    S  LG + F +G+GGTGKKS N +F+NYG++F  +D IGC+ D + G  
Sbjct  282  VVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECGND  341

Query  202  -HVKFSKNGKDLGLAFEIPPH-MKNQALFPACVLKNAELKFNFGEEEFKF------PPKD  253
              + F+KNGK +G+AF I    +  QAL+P  ++KN  ++FNFG+    +          
Sbjct  342  VELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFTFI  401

Query  254  GFVALSKAPDGYIVKSQHSGN  274
              + LS+   G I     +  
Sbjct  402  QHLPLSERIRGTIGPKSKAEC  422


>sp|Q9BUJ2|HNRL1_HUMAN Heterogeneous nuclear ribonucleoprotein 
U-like protein 1 OS=Homo sapiens OX=9606 GN=HNRNPUL1 PE=1 SV=2
Length=856

 Score = 156 bits (393),  Expect = 4e-38, Method: Composition-based stats.
 Identities = 59/170 (35%), Positives = 93/170 (55%), Gaps = 23/170 (14%)

Query  97   DRGSAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCH-------------DQG  143
            DR S + +  +G          W G RA+ G+ +G+  +E+  +             D  
Sbjct  227  DRSSGYPLTIEGFAYL------WSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPH  280

Query  144  LCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKG--  201
            + R+GWS    S  LG + F +G+GGTGKKS N +F+NYG++F  +D IGC+ D + G  
Sbjct  281  VVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECGND  340

Query  202  -HVKFSKNGKDLGLAFEIPPH-MKNQALFPACVLKNAELKFNFGEEEFKF  249
              + F+KNGK +G+AF I    +  QAL+P  ++KN  ++FNFG+    +
Sbjct  341  VELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPY  390


>sp|P75335|Y443_MYCPN Probable ATP-dependent RNA helicase MG308 
homolog OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129 
/ Subtype 1) OX=272634 GN=MPN_443 PE=3 SV=1
Length=409

 Score = 150 bits (378),  Expect = 5e-38, Method: Composition-based stats.
 Identities = 77/447 (17%), Positives = 145/447 (32%), Gaps = 87/447 (19%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNI  306
            FK  P+   V +++   G            + Q     N P+A++  P++EL  Q L  +
Sbjct  27   FKVWPRQNVVGIAETGSGKTFAYLLPA---LNQIDVTLNKPQAVVFVPTKELKWQILTIL  83

Query  307  KQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRF  366
               K      K+                   +   ++V        L+    +    +++
Sbjct  84   NDIKASFTGLKVS--------------ENFNSNAHLIVS-------LIGKDIILHETIKY  122

Query  367  LVLDEADGLLSQGYS-DFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF  425
            +V DE D  L      ++IN +          G        SATL +  ++++ +++   
Sbjct  123  VVFDEVDMFLEDSSQAEWINCVQLFQKHKPHFG------FFSATLFNEQLQQIRKQVAPL  176

Query  426  PTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW  485
             T V+ K        V H ++ +N +                                  
Sbjct  177  -TVVNQKKRAWKHSLVKHFLLNLNGQEP--------------------------------  203

Query  486  SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL  545
                        +  +  H  +Q ++FC        L               +Q S   L
Sbjct  204  --------FAGLLALLNYHHNEQVLVFCSNAKSLKQLTSLL---------AHNQLSFKSL  246

Query  546  HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR  605
            HG   P+ERK          VR L+ +D+ ARGID+     VI+  LP     Y+HR GR
Sbjct  247  HGQLTPNERKHIFTSAANNTVRVLVVSDLLARGIDLPHFSVVISWDLPLVDSFYIHRSGR  306

Query  606  VGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE---I  662
            V R    G +        +   + +     KG     +  +   T+ + +++   +   +
Sbjct  307  VARFNSWGNSYVFDLPHNQ---HKLTKFAHKGILFNSVHLERDGTLKFPQLKQSKQKPAV  363

Query  663  EEHLNCTISQVEPDIKVPVDEFDGKVT  689
               L   I +++   K     +  +  
Sbjct  364  SSELKTAIKRIKAGYKKVKPNYKKRQK  390


 Score = 47.8 bits (112),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 22/124 (18%), Positives = 39/124 (31%), Gaps = 16/124 (13%)

Query  7    MGVMPEIAQAVEEMDWLLPTDIQ---AESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            M  +  +   ++    +  + IQ    +  P      +V+  AETGSGKT A+ +P +  
Sbjct  1    MHFIQPLQAFLQTKHIVEFSSIQQAVFKVWP----RQNVVGIAETGSGKTFAYLLPALNQ  56

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            +  TL   Q                 + +       +       GL          H   
Sbjct  57   IDVTLNKPQ---------AVVFVPTKELKWQILTILNDIKASFTGLKVSENFNSNAHLIV  107

Query  124  ATKG  127
            +  G
Sbjct  108  SLIG  111


>sp|Q54VF1|DDX56_DICDI Probable ATP-dependent RNA helicase ddx56 
OS=Dictyostelium discoideum OX=44689 GN=ddx56 PE=3 SV=1
Length=685

 Score = 154 bits (388),  Expect = 8e-38, Method: Composition-based stats.
 Identities = 72/380 (19%), Positives = 139/380 (37%), Gaps = 71/380 (19%)

Query  197  DIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFV  256
            D+      F    + +GL   I   +K        ++++  +  +              +
Sbjct  17   DLIDLECTF----ESMGLDNRILRALKKMGFQNPSLVQSKSIPLSL--------QGKDIL  64

Query  257  ALSKAPDGYIVKSQHSGNAQVTQTKFLPN--APKALIVEPSRELAEQTLNNIKQFKKYID  314
            A ++   G           +V   K   N    KA+++ P+REL EQ  N+  Q   Y  
Sbjct  65   AKARTGSGKTAAYSIPIIQKVLMAKEKSNIKGVKAVVLVPTRELCEQVKNHFNQVSYYCQ  124

Query  315  NPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNL-SQVRFLVLDEAD  373
               +  + +       +Q  +L +  D++V TP RL   +    + L S +  LV+DEAD
Sbjct  125  Q-LVSVVQLGNDKTLDEQKGLLRDIPDVIVSTPTRLVQHLENKTIQLQSTLDILVIDEAD  183

Query  374  GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG  433
             +L+ G+ + IN + + +P+V       Q  + SATL   +V++L + ++H P  + L+ 
Sbjct  184  LVLNYGHQNDINIIKSFLPKV------CQCFLMSATLTK-EVEELKKLVLHTPAVLKLEE  236

Query  434  EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK  493
            + ++   +    +                                       +E  K L 
Sbjct  237  DKAIQTNLSEYSIKC-------------------------------------AEVDKFLL  259

Query  494  GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
                +R        + + F     +C  L+ +F +             C  L+ +   + 
Sbjct  260  VFSLLRL--RLMQGKILFFVNDTNNCYKLKLFFERF---------HIKCAVLNSELPINS  308

Query  554  RKQNLERFKKGDVRFLICTD  573
            R   + +F KG   +LI TD
Sbjct  309  RHDIILQFNKGLFDYLIATD  328


 Score = 101 bits (252),  Expect = 5e-21, Method: Composition-based stats.
 Identities = 36/100 (36%), Positives = 57/100 (57%), Gaps = 1/100 (1%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             F  MG+   I +A+++M +  P+ +Q++SIPL L G D+L  A TGSGKT A+SIP+IQ
Sbjct  24   TFESMGLDNRILRALKKMGFQNPSLVQSKSIPLSLQGKDILAKARTGSGKTAAYSIPIIQ  83

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF  102
             V    K++   K  K  +      L +   N +++ S +
Sbjct  84   KVL-MAKEKSNIKGVKAVVLVPTRELCEQVKNHFNQVSYY  122


 Score = 92.9 bits (229),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 38/78 (49%), Gaps = 0/78 (0%)

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
             ARGID   V  V+N   P   +NY+HRIGR  R    G+A+S V    E++   V  +R
Sbjct  427  VARGIDFRNVDIVVNFDFPRTIKNYIHRIGRTARGTNKGIALSFVTYHNEELLKKVSKTR  486

Query  635  GKGCYNTRLKEDGGCTIW  652
            G   YN +  E     I 
Sbjct  487  GDAGYNLKPFEFKMNAIE  504


>sp|Q0U397|MRH4_PHANO ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 
/ FGSC 10173) OX=321614 GN=MRH4 PE=3 SV=2
Length=658

 Score = 152 bits (383),  Expect = 3e-37, Method: Composition-based stats.
 Identities = 78/373 (21%), Positives = 133/373 (36%), Gaps = 65/373 (17%)

Query  284  PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL--ENGVD  341
            P  P+A+I+ PS EL  Q     K     +   K R   I   ++A    + L  E GVD
Sbjct  311  PARPRAIILVPSAELVAQVGAVAKSLSHTV---KFRAAPISAKMSATVIRNQLFNEKGVD  367

Query  342  IVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL  401
            +V+ TP  L  +  +    L++V  L+ DEAD L  + +      +        +     
Sbjct  368  VVISTPPLLASIAESNPNILARVTHLICDEADSLFDRSFKPSTTEILE-----RATPSLK  422

Query  402  QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK  461
            Q+I+CSAT+  +  K L+++       +      ++P  V   VV VN       + L  
Sbjct  423  QLILCSATIPKYLDKYLADRF-PDMNRLVTPNLHAIPRRVQLGVVDVNKDPYHGNKNLAC  481

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
            +        +     P      +                       + ++F   + D + 
Sbjct  482  ADTIWQIGRSTGEYDPAEGKEAV--------------------PTKRILVFVNEREDTEK  521

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV---------------  566
            + QY + +G            +  H D  P  + + L  F   D                
Sbjct  522  VAQYLMSKG---------IDALAFHRDTDPSRQAKTLASFTGSDTSTAIKSSPDAPPKPE  572

Query  567  ----------RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAI  616
                      + ++ TD+ +RGID   V +VI   +P    +++HR+GR GR  R G  I
Sbjct  573  LASKRTLANTKVIVTTDLGSRGIDTVSVRHVILYDVPHTTIDFIHRLGRTGRMGRRGRGI  632

Query  617  SLVATEKEKVWYH  629
             L+          
Sbjct  633  VLLGPGDRADVVK  645


 Score = 56.3 bits (134),  Expect = 9e-07, Method: Composition-based stats.
 Identities = 23/97 (24%), Positives = 50/97 (52%), Gaps = 20/97 (21%)

Query  3    AFSEMGVMPEIAQAVEE----MDWLLPTDIQAESIPLILG---------------GGDV-  42
            +F +M ++  +  A+++    +++  PT  Q+ ++P +LG               G +  
Sbjct  183  SFDKMPLLDTVQAAIKDALPALEYRSPTPAQSVAVPALLGLEAKKRTKATSTKKGGPEAF  242

Query  43   LMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKT  79
            L+AAETGSGKT A+ +P +  + +  + ++E  + + 
Sbjct  243  LLAAETGSGKTLAYLLPTLDAIKKAEQQEKEDAEAQA  279


>sp|A4QTC6|MRH4_PYRO7 ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / 
FGSC 8958) OX=242507 GN=MRH4 PE=3 SV=1
Length=651

 Score = 151 bits (382),  Expect = 4e-37, Method: Composition-based stats.
 Identities = 88/438 (20%), Positives = 161/438 (37%), Gaps = 74/438 (17%)

Query  214  LAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSG  273
            LA E         L PA             E E   P    +          + K+  S 
Sbjct  245  LAAETGSGKTLAYLVPAFN--------ALKEAEASDPDIIAYNQRRAEERALLAKNPGSK  296

Query  274  NAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQL  333
                 +     + P+ +I+ P+ EL +Q     K         K R  +I   ++A    
Sbjct  297  IKTRPEPHPTMSRPRVVILVPTAELVDQVGRVAKSLSH---VAKARTRMISANMSATMIE  353

Query  334  SVLEN--GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ-  390
            + + +  G+DI++ TP  L  +  +    LS+V  LV+DEAD LL + +S+    + ++ 
Sbjct  354  NDVFSPAGIDILISTPHLLASIAESHPNILSRVSHLVVDEADSLLDRSFSEVTTPIIDRA  413

Query  391  IPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNP  450
            +P +       Q+++CSAT+       L+ +       +      ++P  V   V+ V  
Sbjct  414  LPSI------RQLVLCSATIPRRLDNYLASRF-PNMRRITTPNLHAIPRRVQLGVIDVAR  466

Query  451  KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAI  510
               R  + +                   A +  +WS   +  + E  V+   +  + + +
Sbjct  467  DPYRGNKNI-------------------ACADAIWSIGKEAGRHEGPVKG--QVDVRRIM  505

Query  511  IFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV----  566
            +F   +     + +Y   +G            V LH D     + + L  F   +     
Sbjct  506  VFVNEREKTQEVAEYLKSKG---------IDAVALHRDTSEERQSEMLASFTSNETMSIP  556

Query  567  -------------------RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVG  607
                               + ++ TD+A+RGID   V +V+   +P    +++HR+GR G
Sbjct  557  TPEGGVAGSPRSSRTLPNTKVIVATDLASRGIDTLAVRHVVLYDVPHTTIDFIHRLGRAG  616

Query  608  RAERMGLAISLVATEKEK  625
            R  R G  I LV  +  K
Sbjct  617  RMGRRGRGIVLVGNDDRK  634


 Score = 52.4 bits (124),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 24/102 (24%), Positives = 43/102 (42%), Gaps = 36/102 (35%)

Query  1    MAAFSEMGVMPE-----IAQAVEEMDWLLPTDIQAESIPLILG-----------------  38
            + +F +  ++P+     + +A++ M  + PT +Q  +IP +LG                 
Sbjct  166  VDSFDQFDLLPQVKDAVLNEALKGMLDIKPTPVQRLAIPALLGQTTGARSRWRTKSKPAD  225

Query  39   --------------GGDVLMAAETGSGKTGAFSIPVIQIVYE  66
                            + L+AAETGSGKT A+ +P    + E
Sbjct  226  SGSEAASPDAPPPPREEFLLAAETGSGKTLAYLVPAFNALKE  267


>sp|Q00839|HNRPU_HUMAN Heterogeneous nuclear ribonucleoprotein 
U OS=Homo sapiens OX=9606 GN=HNRNPU PE=1 SV=6
Length=825

 Score = 151 bits (381),  Expect = 1e-36, Method: Composition-based stats.
 Identities = 54/211 (26%), Positives = 101/211 (48%), Gaps = 20/211 (9%)

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKE--  118
             + + E    + +  +     +          ++ Y+    F I  D L   S  ++   
Sbjct  258  FEYIEENKYSRAKSPQPPVEEEDEHFDDTVVCLDTYNCDLHFKISRDRLSASSLTMESFA  317

Query  119  --WHGCRATKGLMKGKHYYEVSCHDQ-------------GLCRVGWSTMQASLDLGTDKF  163
              W G RA+ G+ KGK  +E+   ++                R+GWS   + + LG ++F
Sbjct  318  FLWAGGRASYGVSKGKVCFEMKVTEKIPVRHLYTKDIDIHEVRIGWSLTTSGMLLGEEEF  377

Query  164  GFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDI--DKGHVKFSKNGKDLGLAFEIPPH  221
             +G+   G K+ N + ++YGE+F  +D I C+ +   D+  + ++KNG+DLG+AF+I   
Sbjct  378  SYGYSLKGIKTCNCETEDYGEKFDENDVITCFANFESDEVELSYAKNGQDLGVAFKISKE  437

Query  222  -MKNQALFPACVLKNAELKFNFGEEEFKFPP  251
             +  + LFP  +  N  ++FNFG++E  + P
Sbjct  438  VLAGRPLFPHVLCHNCAVEFNFGQKEKPYFP  468


>sp|Q6IMY8|HNRPU_RAT Heterogeneous nuclear ribonucleoprotein U 
OS=Rattus norvegicus OX=10116 GN=Hnrnpu PE=1 SV=1
Length=798

 Score = 150 bits (379),  Expect = 2e-36, Method: Composition-based stats.
 Identities = 54/211 (26%), Positives = 102/211 (48%), Gaps = 20/211 (9%)

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKE--  118
             + + E    + +  +     +          ++ Y+    F I  D L   S  ++   
Sbjct  232  FEYIEENKYSRAKSPQPPVEEEDEHFDDTVVCLDTYNCDLHFKISRDRLSASSLTMESFA  291

Query  119  --WHGCRATKGLMKGKHYYEVSCHDQ-------------GLCRVGWSTMQASLDLGTDKF  163
              W G RA+ G+ KGK  +E+   ++                R+GWS   + + LG ++F
Sbjct  292  FLWAGGRASYGVSKGKVCFEMKVTEKIPVRHLYTKDIDIHEVRIGWSLTTSGMLLGEEEF  351

Query  164  GFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDI--DKGHVKFSKNGKDLGLAFEIPPH  221
             +G+   G K+ N + ++YGE+F  +D I C+ +   D+  + ++KNG+DLG+AF+I   
Sbjct  352  SYGYSLKGIKTCNCETEDYGEKFDENDVITCFANFETDEVELSYAKNGQDLGVAFKISKE  411

Query  222  -MKNQALFPACVLKNAELKFNFGEEEFKFPP  251
             + ++ LFP  +  N  ++FNFG++E  + P
Sbjct  412  VLADRPLFPHVLCHNCAVEFNFGQKEKPYFP  442


>sp|Q8VEK3|HNRPU_MOUSE Heterogeneous nuclear ribonucleoprotein 
U OS=Mus musculus OX=10090 GN=Hnrnpu PE=1 SV=1
Length=800

 Score = 150 bits (379),  Expect = 2e-36, Method: Composition-based stats.
 Identities = 54/211 (26%), Positives = 102/211 (48%), Gaps = 20/211 (9%)

Query  61   IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKE--  118
             + + E    + +  +     +          ++ Y+    F I  D L   S  ++   
Sbjct  234  FEYIEENKYSRAKSPQPPVEEEDEHFDDTVVCLDTYNCDLHFKISRDRLSASSLTMESFA  293

Query  119  --WHGCRATKGLMKGKHYYEVSCHDQ-------------GLCRVGWSTMQASLDLGTDKF  163
              W G RA+ G+ KGK  +E+   ++                R+GWS   + + LG ++F
Sbjct  294  FLWAGGRASYGVSKGKVCFEMKVTEKIPVRHLYTKDIDIHEVRIGWSLTTSGMLLGEEEF  353

Query  164  GFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDI--DKGHVKFSKNGKDLGLAFEIPPH  221
             +G+   G K+ N + ++YGE+F  +D I C+ +   D+  + ++KNG+DLG+AF+I   
Sbjct  354  SYGYSLKGIKTCNCETEDYGEKFDENDVITCFANFETDEVELSYAKNGQDLGVAFKISKE  413

Query  222  -MKNQALFPACVLKNAELKFNFGEEEFKFPP  251
             + ++ LFP  +  N  ++FNFG++E  + P
Sbjct  414  VLADRPLFPHVLCHNCAVEFNFGQKEKPYFP  444


>sp|Q00PI9|HNRL2_MOUSE Heterogeneous nuclear ribonucleoprotein 
U-like protein 2 OS=Mus musculus OX=10090 GN=Hnrnpul2 PE=1 
SV=2
Length=745

 Score = 147 bits (370),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 58/170 (34%), Positives = 89/170 (52%), Gaps = 17/170 (10%)

Query  93   MNPYDRGSAFAIGSDGLCCQSREVKE----WHGCRATKGLMKGKHYYEVS----------  138
            ++ Y     F I  D    Q    ++    W G R+T G+ KGK  +E            
Sbjct  246  LDTYTSDLHFQISKDRYGGQPLFSEKFPTLWSGARSTYGVTKGKVCFEAKVTQNLPMKEG  305

Query  139  CHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDI  198
            C +  L RVGWS   +   LG D+F +GF G G K+ N QF+ +G+ F  +D IGC+ + 
Sbjct  306  CTEVSLLRVGWSVDFSCSQLGEDEFSYGFDGRGLKAENGQFEEFGQTFGENDVIGCFANF  365

Query  199  --DKGHVKFSKNGKDLGLAFEIPPH-MKNQALFPACVLKNAELKFNFGEE  245
              ++  + FSKNG+DLG+AF I    + ++AL P  + KN  ++ NFG++
Sbjct  366  ETEEVELSFSKNGEDLGVAFRISKESLADRALLPHVLCKNCVVELNFGQK  415


>sp|Q1E9B7|MRH4_COCIM ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Coccidioides immitis (strain RS) OX=246410 GN=MRH4 
PE=3 SV=1
Length=656

 Score = 145 bits (365),  Expect = 6e-35, Method: Composition-based stats.
 Identities = 80/375 (21%), Positives = 137/375 (37%), Gaps = 57/375 (15%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL--ENGVDIV  343
             PKA+I+ P+ EL EQ    +KQ    +   K R  L+      R     L   NG+DI+
Sbjct  295  KPKAIILVPTSELVEQIGRIVKQLAHTV---KYRSALLASNYTPRKIRKTLFNPNGLDIL  351

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            V TP  +  +        S+V  LV+DEAD L  + +S   N + ++           Q+
Sbjct  352  VTTPYLVASIAEANPYIFSRVTHLVVDEADSLFDKSFSPKTNTIIDRTAPTLK-----QL  406

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            I+CSAT+      +L E+       +      ++P  V   VV ++ +  R    L  + 
Sbjct  407  ILCSATIPRSLDNRLRERF-PQIRRLVTPNLHAIPRRVQLGVVDIDKEPYRGRRHLACAD  465

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                   + +                     +   +   + +    I+F   +     + 
Sbjct  466  AIWSIGRSGNPYD-----------------ADVGYQVTGQKEPKSIIVFVNERETAAEVA  508

Query  524  QYFIQQGGGPDKKGHQFSCVC----------------------LHGDRKPHE-------R  554
            ++ + +G          S                         L G+R   +       R
Sbjct  509  EFLVTKGINAVSLTRDTSEKRQAQILAEFTTEKNPPQPEDYKMLKGNRSDDDSVPFVNVR  568

Query  555  KQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGL  614
              N    +  + + L+ TD+ +RGID   V  VI   +P    +++HR+GR+GR  R G 
Sbjct  569  PGNERSNRLSNTKVLVVTDLGSRGIDTVAVKTVILYDVPHSTIDFIHRLGRLGRMGRRGR  628

Query  615  AISLVATEKEKVWYH  629
             I LV  +  K    
Sbjct  629  GIVLVGKKDRKDVVR  643


 Score = 67.5 bits (163),  Expect = 2e-10, Method: Composition-based stats.
 Identities = 28/94 (30%), Positives = 48/94 (51%), Gaps = 22/94 (23%)

Query  1    MAAFSEMGVMPEIAQAVEE-----MDWLLPTDIQAESIPLIL-GG----------GDV--  42
            + +F +  ++P + Q+V +     ++++ PT IQ  +IP IL  G           D+  
Sbjct  156  ITSFDQFDLLPSVRQSVYDSALPGLEYVTPTPIQRLAIPAILRQGSATPKPEEGQEDMPR  215

Query  43   ----LMAAETGSGKTGAFSIPVIQIVYETLKDQQ  72
                L+AAETGSGKT A+ +PV+  +  T    +
Sbjct  216  FDQYLLAAETGSGKTLAYLLPVVDAIKRTEAKDK  249


>sp|Q5R881|RSPRY_PONAB RING finger and SPRY domain-containing 
protein 1 OS=Pongo abelii OX=9601 GN=RSPRY1 PE=2 SV=1
Length=576

 Score = 142 bits (359),  Expect = 2e-34, Method: Composition-based stats.
 Identities = 43/208 (21%), Positives = 79/208 (38%), Gaps = 13/208 (6%)

Query  93   MNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTM  152
            +N  D      I   GL     +   +   R T  +  G  YYEV+    G+ ++GW+T 
Sbjct  322  LNSNDVSEYLKISPHGLEA-RCDASSFESVRCTFCVDAGVWYYEVTVVTSGVMQIGWATR  380

Query  153  QASLD------LGTDKFGFGFGGTGKKSH--NKQFDNYGEEFTMHDTIGCYLDIDKGHVK  204
             +         +G D++   + G  +      +   +    +   DT+G  LD+++  + 
Sbjct  381  DSKFLNHEGYGIGDDEYSCAYDGCRQLIWYNARSKPHIHPCWKEGDTVGFLLDLNEKQMI  440

Query  205  FSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSK----  260
            F  NG  L    ++     +     A  +   + +FNFG + FK+PP   F   +     
Sbjct  441  FFLNGNQLPPEKQVFSSTVSGFFAAASFMSYQQCEFNFGAKPFKYPPSMKFSTFNDYAFL  500

Query  261  APDGYIVKSQHSGNAQVTQTKFLPNAPK  288
              +  I+  +H   A + Q     N   
Sbjct  501  TAEEKIILPRHRRLALLKQVSIRENCCS  528


>sp|Q96DX4|RSPRY_HUMAN RING finger and SPRY domain-containing 
protein 1 OS=Homo sapiens OX=9606 GN=RSPRY1 PE=1 SV=1
Length=576

 Score = 142 bits (359),  Expect = 2e-34, Method: Composition-based stats.
 Identities = 43/208 (21%), Positives = 79/208 (38%), Gaps = 13/208 (6%)

Query  93   MNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTM  152
            +N  D      I   GL     +   +   R T  +  G  YYEV+    G+ ++GW+T 
Sbjct  322  LNSNDVSEYLKISPHGLEA-RCDASSFESVRCTFCVDAGVWYYEVTVVTSGVMQIGWATR  380

Query  153  QASLD------LGTDKFGFGFGGTGKKSH--NKQFDNYGEEFTMHDTIGCYLDIDKGHVK  204
             +         +G D++   + G  +      +   +    +   DT+G  LD+++  + 
Sbjct  381  DSKFLNHEGYGIGDDEYSCAYDGCRQLIWYNARSKPHIHPCWKEGDTVGFLLDLNEKQMI  440

Query  205  FSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSK----  260
            F  NG  L    ++     +     A  +   + +FNFG + FK+PP   F   +     
Sbjct  441  FFLNGNQLPPEKQVFSSTVSGFFAAASFMSYQQCEFNFGAKPFKYPPSMKFSTFNDYAFL  500

Query  261  APDGYIVKSQHSGNAQVTQTKFLPNAPK  288
              +  I+  +H   A + Q     N   
Sbjct  501  TAEEKIILPRHRRLALLKQVSIRENCCS  528


>sp|O94761|RECQ4_HUMAN ATP-dependent DNA helicase Q4 OS=Homo sapiens 
OX=9606 GN=RECQL4 PE=1 SV=2
Length=1208

 Score = 144 bits (363),  Expect = 3e-34, Method: Composition-based stats.
 Identities = 90/527 (17%), Positives = 163/527 (31%), Gaps = 102/527 (19%)

Query  242  FGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKA----LIVEPSRE  297
             G + F+   +   + +       +V    +G +   Q   L  + ++    L+V P   
Sbjct  476  LGHQAFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQLPALLYSRRSPCLTLVVSPLLS  535

Query  298  LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIVVGTPGRLDDL  353
            L +  ++ +         P L+   I  G+  + + SVL+      V +++ TP   + L
Sbjct  536  LMDDQVSGL--------PPCLKAACIHSGMTRKQRESVLQKIRAAQVHVLMLTP---EAL  584

Query  354  VSTGKL----NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSAT  409
            V  G L     L  V F  +DEA   LSQ   +F          +         +  +AT
Sbjct  585  VGAGGLPPAAQLPPVAFACIDEAH-CLSQWSHNFRPCYLRVCKVLRERMGVHCFLGLTAT  643

Query  410  LHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDV  469
                    ++ + +      DL G   VP  +H  V         L   L          
Sbjct  644  ATRRTASDVA-QHLAVAEEPDLHGPAPVPTNLHLSVSMDRDTDQALLTLLQ---------  693

Query  470  HAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQ  529
                                            +   +D  II+C  + D + +       
Sbjct  694  ------------------------------GKRFQNLDSIIIYCNRREDTERIAALLRTC  723

Query  530  G-----GGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
                   G   +  + +    H      ER++    F +G +R ++ T     G+D   V
Sbjct  724  LHAAWVPGSGGRAPKTTAEAYHAGMCSRERRRVQRAFMQGQLRVVVATVAFGMGLDRPDV  783

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLK  644
              V+++ LP   ++YV  +GR GR  +       +  +            G+     R  
Sbjct  784  RAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLFLQPQ------------GEDLRELRRH  831

Query  645  EDGGCTIWYNEMQLLSEIEEHLNCT--------------ISQVEPDIKVPVDEFDGKVTY  690
                 T +    +L+  +     CT                 V        ++   +   
Sbjct  832  VHADSTDFLAVKRLVQRVFPACTCTCTRPPSEQEGAVGGERPVPKYPPQEAEQLSHQAAP  891

Query  691  GQKRAAGGGSYKGHVDILAP--TVQELAALEKEAQTSFLHLGYLPNQ  735
            G +R        GH   L    TVQ L   E+  +T   +L   P+ 
Sbjct  892  GPRRV-----CMGHERALPIQLTVQALDMPEEAIETLLCYLELHPHH  933


 Score = 40.1 bits (92),  Expect = 0.083, Method: Composition-based stats.
 Identities = 14/59 (24%), Positives = 27/59 (46%), Gaps = 0/59 (0%)

Query  10   MPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETL  68
              E+ QA+E++        Q  ++  IL G   L+   TG+GK+  + +P +     + 
Sbjct  466  PAEVFQALEQLGHQAFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQLPALLYSRRSP  524


>sp|Q1KMD3|HNRL2_HUMAN Heterogeneous nuclear ribonucleoprotein 
U-like protein 2 OS=Homo sapiens OX=9606 GN=HNRNPUL2 PE=1 SV=1
Length=747

 Score = 143 bits (361),  Expect = 3e-34, Method: Composition-based stats.
 Identities = 57/170 (34%), Positives = 89/170 (52%), Gaps = 17/170 (10%)

Query  93   MNPYDRGSAFAIGSDGLCCQSREVKE----WHGCRATKGLMKGKHYYEVS----------  138
            ++ Y     F +  D    Q    ++    W G R+T G+ KGK  +E            
Sbjct  248  LDTYTSDLHFQVSKDRYGGQPLFSEKFPTLWSGARSTYGVTKGKVCFEAKVTQNLPMKEG  307

Query  139  CHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDI  198
            C +  L RVGWS   +   LG D+F +GF G G K+ N QF+ +G+ F  +D IGC+ + 
Sbjct  308  CTEVSLLRVGWSVDFSRPQLGEDEFSYGFDGRGLKAENGQFEEFGQTFGENDVIGCFANF  367

Query  199  --DKGHVKFSKNGKDLGLAFEIPP-HMKNQALFPACVLKNAELKFNFGEE  245
              ++  + FSKNG+DLG+AF I    + ++AL P  + KN  ++ NFG++
Sbjct  368  ETEEVELSFSKNGEDLGVAFWISKDSLADRALLPHVLCKNCVVELNFGQK  417


>sp|Q95LP3|RSPRY_MACFA RING finger and SPRY domain-containing 
protein 1 OS=Macaca fascicularis OX=9541 GN=RSPRY1 PE=2 SV=1
Length=576

 Score = 142 bits (357),  Expect = 3e-34, Method: Composition-based stats.
 Identities = 43/208 (21%), Positives = 79/208 (38%), Gaps = 13/208 (6%)

Query  93   MNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTM  152
            +N  D      I   GL     +   +   R T  +  G  YYEV+    G+ ++GW+T 
Sbjct  322  LNSNDVSEYLKISPHGLEA-RCDASSFESVRCTFCVDAGVWYYEVTVVTSGVMQIGWATR  380

Query  153  QASLD------LGTDKFGFGFGGTGKKSH--NKQFDNYGEEFTMHDTIGCYLDIDKGHVK  204
             +         +G D++   + G  +      +   +    +   DT+G  LD+++  + 
Sbjct  381  DSKFLNHEGYGIGDDEYSCAYDGCRQLIWYNARSKPHIHPCWKEGDTVGFLLDLNEKQMI  440

Query  205  FSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSK----  260
            F  NG  L    ++     +     A  +   + +FNFG + FK+PP   F   +     
Sbjct  441  FFLNGNQLPPEKQVFSSTISGFFAAASFMSYQQCEFNFGAKPFKYPPSMKFSTFNDYAFL  500

Query  261  APDGYIVKSQHSGNAQVTQTKFLPNAPK  288
              +  I+  +H   A + Q     N   
Sbjct  501  TAEEKIILPRHRRLALLKQVSIRENCCS  528


>sp|Q8BVR6|RSPRY_MOUSE RING finger and SPRY domain-containing 
protein 1 OS=Mus musculus OX=10090 GN=Rspry1 PE=1 SV=1
Length=576

 Score = 141 bits (356),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 43/208 (21%), Positives = 78/208 (38%), Gaps = 13/208 (6%)

Query  93   MNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTM  152
            +N  D      I   GL     +   +   R T  +  G  YYEV+    G+ ++GW+T 
Sbjct  322  LNSNDVSEYLKISPHGLEA-RCDASSFESVRCTFCVDTGVWYYEVTVVTSGVMQIGWATR  380

Query  153  QASLD------LGTDKFGFGFGGTGKKSH--NKQFDNYGEEFTMHDTIGCYLDIDKGHVK  204
             +         +G D++   + G  +      +   +    +   DT+G  LD+++  + 
Sbjct  381  DSKFLNHEGYGIGDDEYSCAYDGCRQLIWYNARSKPHVHPCWKEGDTVGFLLDLNEKQMI  440

Query  205  FSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSK----  260
            F  NG  L    ++     +     A  +   + +FNFG   FK+PP   F   +     
Sbjct  441  FFLNGNQLPPEKQVFSSTVSGFFAAASFMSYQQCEFNFGARPFKYPPSMKFSTFNDYAFL  500

Query  261  APDGYIVKSQHSGNAQVTQTKFLPNAPK  288
              +  I+  +H   A + Q     N   
Sbjct  501  TAEEKIILPRHRRLALLKQVSIRENCCS  528


>sp|A7EWH6|MRH4_SCLS1 ATP-dependent RNA helicase mrh4, mitochondrial 
OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 
/ Ss-1) OX=665079 GN=mrh4 PE=3 SV=1
Length=615

 Score = 142 bits (357),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 82/395 (21%), Positives = 149/395 (38%), Gaps = 81/395 (21%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL--ENGVDIVV  344
            P+A+I+ P+ EL  Q    +K F   +   K +  +I    + +   + L   +G+DI+V
Sbjct  260  PRAIILVPTSELVTQVGTLLKLFSHTV---KFKAAVISSNFSGKVIRNRLFSPSGIDILV  316

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TP  L  +  +    LS+V  L++DEAD LL +G+S   + +   I + T   ++L  +
Sbjct  317  STPHLLSSIADSDPNILSRVTHLIIDEADSLLDRGFSPLTSAI---IDRATPSLEKL--V  371

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            +CSAT+    +     K       +      ++P  V   VV V     R          
Sbjct  372  LCSATIP-RSLDSFLRKRFPDINRLVTPNLHAIPRRVQLGVVDVERDPYR----------  420

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                     N +  A +  +WS      + +  V+ + + K  + ++F   +     +  
Sbjct  421  ---------NNKNLACADTIWSIGKAAAEHDGPVKGLMDVK--RILVFVNEREKTQEVAD  469

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF-----------------------  561
            Y + +G            + L  D     + + L  F                       
Sbjct  470  YLVSKG---------VDAIALSRDTPEQRQSEMLASFTSPAKLSVEKPVSHPGSLSDNQP  520

Query  562  --------------KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVG  607
                          +  + + L+ TD+ +RGID   V +VI   +P    +++HR+GR G
Sbjct  521  NYVPFGEVAPPVKRRLPNTKVLVTTDLGSRGIDTVAVRHVILYDVPHSTIDFIHRLGRTG  580

Query  608  RAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTR  642
            R  R G  I LV     +    V     +G +  +
Sbjct  581  RMGRRGRGIVLVGKGDRR---DVVKEVREGMFEGK  612


 Score = 55.5 bits (132),  Expect = 1e-06, Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 40/79 (51%), Gaps = 15/79 (19%)

Query  1    MAAFSEMGVMPEIAQAVE-----EMDWLLPTDIQAESIPLILGGGD----------VLMA  45
            + +F +  ++  + QA+      E+   +PT +Q  ++P +LG              L+A
Sbjct  137  VQSFEQFALLDSVKQAIFQQALPELKEHVPTPVQRIAVPALLGDQQSRRPKSEMEQYLIA  196

Query  46   AETGSGKTGAFSIPVIQIV  64
            AETGSGKT ++ IP I  +
Sbjct  197  AETGSGKTLSYLIPTINAI  215


>sp|O13983|HRQ1_SCHPO ATP-dependent helicase hrq1 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=hrq1 
PE=1 SV=4
Length=1063

 Score = 142 bits (359),  Expect = 9e-34, Method: Composition-based stats.
 Identities = 90/500 (18%), Positives = 166/500 (33%), Gaps = 61/500 (12%)

Query  233  LKNAELKFNFGEEEFKFPPKDGFVALSKAPDGY---IVKSQHSGNAQVTQTKFL-----P  284
            L    +   +     +   K    A++   +G+   +  S  SG + + Q   L      
Sbjct  295  LSQELINALYTSRNIEKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSLLED  354

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDN-PKLRELLIIGGVAARDQLSVLENGVDIV  343
            N   A  V P++ LA+    ++     Y+     +R     G      + S++ +  +I+
Sbjct  355  NQSTAFFVFPTKSLAQDQKKSLIDILSYMPTLKNIRVDTFDGDTPLESRESIIRS-ANII  413

Query  344  VGTPGRLDDLV----STGKLNLSQVRFLVLDEAD---GLLSQGYSDFINRMHNQIPQVTS  396
               P  L   +    +        ++  VLDEA    G+     +  + RM  +I +   
Sbjct  414  FTNPDMLHQTILPNANRWYYFFKNLKLFVLDEAHVYNGIFGVHVAFVLRRM-RRIAEYFG  472

Query  397  DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLW  456
            + +    + CSAT+                  +    +    D +  +    +P   + +
Sbjct  473  NSQYR-FVSCSATIEDP---------------LQHMKKIFGVDNIKLINYTSSPSGSKKF  516

Query  457  ERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTK  516
                  ++        D   P        SEA K+L      R        + I+FCR +
Sbjct  517  VMWNPPYV--------DPKHPDDGKKSAISEASKLLIKFAEKRV-------RTIVFCRVR  561

Query  517  IDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAA  576
              C++L +   Q+     K                 ER++       G +  +I T+   
Sbjct  562  KTCESLMRLVRQELKTKQKGDLLSKIQSYRAGYTVQERRKIESEMFNGKLYGIIATNALE  621

Query  577  RGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGK  636
             GIDI  +  VI +  P    N   + GR GR  +  LA+ +V T     +Y       K
Sbjct  622  LGIDIGSLDAVITIGFPYSLSNLRQQFGRAGRRNKSSLAVYIVETFPVDQFY------LK  675

Query  637  GCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTY--GQKR  694
                   + +   T+      LL+    HL C   ++  +I+     F  ++        
Sbjct  676  HPILIHTQPNAELTLDLTNEVLLA---SHLQCAAYELPINIRSDEKFFGNQIQDICEANL  732

Query  695  AAGGGSYKGHVDILA-PTVQ  713
                 SY+ H   L  P  Q
Sbjct  733  EMVEESYRPHPKYLPFPASQ  752


 Score = 42.4 bits (98),  Expect = 0.016, Method: Composition-based stats.
 Identities = 24/143 (17%), Positives = 50/143 (35%), Gaps = 12/143 (8%)

Query  8    GVMPEIAQAVEEM-DWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYE  66
             +  E+  A+    +       QA++I  +  G  V+++  T SGK+  + IP++Q + E
Sbjct  294  PLSQELINALYTSRNIEKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSLLE  353

Query  67   TLKDQ-----------QEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSRE  115
              +             Q+ KK    I +    L   +++ +D  +        +   +  
Sbjct  354  DNQSTAFFVFPTKSLAQDQKKSLIDILSYMPTLKNIRVDTFDGDTPLESRESIIRSANII  413

Query  116  VKEWHGCRATKGLMKGKHYYEVS  138
                     T      + YY   
Sbjct  414  FTNPDMLHQTILPNANRWYYFFK  436


>sp|Q2HCV7|ROK1_CHAGB ATP-dependent RNA helicase ROK1 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=ROK1 PE=3 SV=1
Length=667

 Score = 137 bits (346),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 91/506 (18%), Positives = 171/506 (34%), Gaps = 82/506 (16%)

Query  215  AFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN  274
             F +P      A  P  +     LK + G +         F+A++    G  +       
Sbjct  194  GFRVPTE-VQMASLPLLLQPTTALKKSEGADIPNIDNGADFLAVAPTGSGKTITFLIPAI  252

Query  275  AQVTQTKFL------PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA  328
              V + +         +  +A++V P+RELA Q +N  ++                    
Sbjct  253  DGVLRRRAEEGRDTDQHVLEAVVVAPTRELATQIVNEGRKLA------------------  294

Query  329  ARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYS-DFINRM  387
                           +GT  R+  +    KL++ +    V DE    L +G   +  +  
Sbjct  295  ---------------IGTGVRVVLMKRALKLDVEE----VADEKSKDLEEGSGSEQGSGD  335

Query  388  HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE--KIMHFPTWV--DLKGEDSVPDTVHH  443
                 +  S+G+  +         S + K L+    ++  P  +   L G+      +  
Sbjct  336  EESEGEEESEGEEGKT--------SKEAKPLARVDILVTTPKILLNFLSGKAGARRLLPS  387

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
            V   +  + D L + L +                        +  ++ L  ++ ++A +E
Sbjct  388  VRSLILDEADVLLDPLFRKQTMAICRACTHPNVALTCWSATMASNVEALVTKHLLQARQE  447

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
                        +     L      +   P + G       LH       R + + RF+ 
Sbjct  448  D-----------RQPTPALHDEL--KYDIPLEAGGSARVAVLHSSMADSARSKIMARFRA  494

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM-GLAISLVATE  622
            G+V  L+ TDV ARG+D  GV  V+N  +P     YVHR GR GRA R  G+A++    +
Sbjct  495  GEVWVLVTTDVLARGVDFAGVNGVVNYDVPTSAAAYVHRAGRTGRAGREGGVAVTFYTKD  554

Query  623  KEKVWYHVCSSR--GKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVP  680
                   V +     +     +    GG T+    +  L ++ +         E   K+ 
Sbjct  555  DIPFVKSVANVIAASEKQAGVQADGGGGGTVQKWLLDALPKVAK---------EDKRKLK  605

Query  681  VDEFDGKVTYGQKRAAGGGSYKGHVD  706
            V   + + T G+       S++   +
Sbjct  606  VRGVESRRTGGKATITTKSSWERRRE  631


 Score = 79.4 bits (194),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 49/129 (38%), Gaps = 22/129 (17%)

Query  1    MAAFSEM----GVMPEIAQAVEEMDWLLPTDIQAESIPLILG------------------  38
            + +F E+     V P++A  +    + +PT++Q  S+PL+L                   
Sbjct  170  LTSFGELRHTYDVSPQLAANIAAQGFRVPTEVQMASLPLLLQPTTALKKSEGADIPNIDN  229

Query  39   GGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDR  98
            G D L  A TGSGKT  F IP I  V     ++              +   +      + 
Sbjct  230  GADFLAVAPTGSGKTITFLIPAIDGVLRRRAEEGRDTDQHVLEAVVVAPTRELATQIVNE  289

Query  99   GSAFAIGSD  107
            G   AIG+ 
Sbjct  290  GRKLAIGTG  298


>sp|Q1LUS8|RBP10_DANRE Ran-binding protein 10 OS=Danio rerio OX=7955 
GN=ranbp10 PE=3 SV=1
Length=604

 Score = 136 bits (342),  Expect = 3e-32, Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 90/226 (40%), Gaps = 23/226 (10%)

Query  45   AAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAI  104
             AE G+G +     P      E   +++  +      +    +   W  +P D+ S   +
Sbjct  1    MAELGAG-SLLTGDPAFNY-QEHELNERLKRLYPAVNEEETPLPRSW--SPKDKYSYIGL  56

Query  105  GSDGLCCQ----SREVKEWHGCRATKGLMK--GKHYYEVSCHDQG---LCRVGWSTMQAS  155
              + L        +  K+    RAT  +    G +Y+EV    +G      +G S    +
Sbjct  57   SQNNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVN  116

Query  156  LDL--GTDKFGFGFGGTGKKSH--NKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKD  211
            ++   G DK  +G+ G    S   +     YG  FT  D IGC +++      ++KNG  
Sbjct  117  MNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINNTCFYTKNGHS  176

Query  212  LGLAFEIPPHMKNQALFPACVLKNAE--LKFNFGEEEFKFPPKDGF  255
            LG+AF   P      L+P   L+     +  NFG++ F F  +D  
Sbjct  177  LGVAFTDLPP----NLYPTVGLQTPGEIVDANFGQQPFVFDIEDYM  218


>sp|A6RCJ9|MRH4_AJECN ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Ajellomyces capsulatus (strain NAm1 / WU24) OX=2059318 
GN=MRH4 PE=3 SV=1
Length=624

 Score = 135 bits (339),  Expect = 9e-32, Method: Composition-based stats.
 Identities = 80/345 (23%), Positives = 134/345 (39%), Gaps = 27/345 (8%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN--GVDIVV  344
            P+A+I+ P+ EL EQ     KQ        K R   I      R   + L N  G+DI++
Sbjct  292  PRAIILVPTAELVEQVGKLAKQLSH---TAKFRSATISSVYTPRRITNSLFNPAGIDILI  348

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TP  L  +  T    LS+V  LV+DEAD LL + +S     +  +     +     Q+I
Sbjct  349  STPHLLTSIAKTNPYILSRVAHLVIDEADSLLDKSFSPLTYSIMEK-----TAPSLTQLI  403

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            +CSAT+    +  + EK       +      ++P  V   VV V+    R  ++L  + I
Sbjct  404  LCSATIP-RSLDSVMEKKFPEMKRLVTPNLHAIPRRVQLGVVDVDKDPSRGNKKLACADI  462

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
                  A +     +      +   +    +     + E    + +    T  +  + ++
Sbjct  463  IWSLGKAGEVAAFLSQKGIHTAALSRDTPDQRKDEILAEFTHVKPL---PTPQEVKDAQR  519

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
                    P       +    H   + + R            + L+ TD+ +RGID   V
Sbjct  520  NKRNWFSDPVPFATGENS---HLGPQRNLRD----------TKVLVTTDLGSRGIDTVAV  566

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
              VI   +P    +++HR+GR GR  R G  I LV+ +  K    
Sbjct  567  RNVILFDVPHTTIDFIHRLGRTGRMGRRGRGIVLVSKKDRKDVVK  611


 Score = 60.9 bits (146),  Expect = 3e-08, Method: Composition-based stats.
 Identities = 23/96 (24%), Positives = 41/96 (43%), Gaps = 30/96 (31%)

Query  1    MAAFSEMGVMPEIAQAVEEMDWLL-----PTDIQAESIPLIL--------GGG-------  40
            + +F +  ++P++ +AV    +       PT IQ  +IP +L                  
Sbjct  150  VTSFDQFPLLPQVREAVYANAFPTLTEISPTPIQRVAIPALLRPPISETEKNKRKKKPQE  209

Query  41   ----------DVLMAAETGSGKTGAFSIPVIQIVYE  66
                        L+AAETG+GKT A+ +P+I  + +
Sbjct  210  EEEEELFHFDQFLLAAETGTGKTLAYLLPIINWIKQ  245


>sp|Q6VN20|RBP10_HUMAN Ran-binding protein 10 OS=Homo sapiens 
OX=9606 GN=RANBP10 PE=1 SV=1
Length=620

 Score = 134 bits (336),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 82/206 (40%), Gaps = 21/206 (10%)

Query  66   ETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQ----SREVKEWHG  121
            E    ++  +      +    +   W  +P D+ +   +    L        +  K+   
Sbjct  32   EQELSRRLQRLYPAVNQQETPLPRSW--SPKDKYNYIGLSQGNLRVHYKGHGKNHKDAAS  89

Query  122  CRATKGLMK--GKHYYEVSCHDQG---LCRVGWSTMQASLDL--GTDKFGFGFGGTGKKS  174
             RAT  +    G +Y+EV    +G      +G S    +++   G DK  +G+ G    S
Sbjct  90   VRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHS  149

Query  175  H--NKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACV  232
               +     YG  FT  D IGC +++  G   ++KNG  LG+AF   P      L+P   
Sbjct  150  FCSSGTGQPYGPTFTTGDVIGCCVNLINGTCFYTKNGHSLGIAFTDLPA----NLYPTVG  205

Query  233  LKNAE--LKFNFGEEEFKFPPKDGFV  256
            L+     +  NFG++ F F  +D   
Sbjct  206  LQTPGEIVDANFGQQPFLFDIEDYMR  231


>sp|P69566|RANB9_MOUSE Ran-binding protein 9 OS=Mus musculus OX=10090 
GN=Ranbp9 PE=1 SV=1
Length=653

 Score = 134 bits (336),  Expect = 3e-31, Method: Composition-based stats.
 Identities = 66/311 (21%), Positives = 122/311 (39%), Gaps = 40/311 (13%)

Query  64   VYETLKDQQEGKKG--KTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQ----SREVK  117
            + E  K+ Q   K       +    +   W  +P D+ S   +  + L        +  K
Sbjct  65   LNEQEKELQRRLKRLYPAVDEQETPLPRSW--SPKDKFSYIGLSQNNLRVHYKGHGKTPK  122

Query  118  EWHGCRATKGLMK--GKHYYEVSCHDQG---LCRVGWSTMQASLDL--GTDKFGFGFGGT  170
            +    RAT  +    G +Y+EV    +G      +G S    +++   G DK  +G+ G 
Sbjct  123  DAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGD  182

Query  171  GKKSH--NKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALF  228
               S   +     YG  FT  D IGC +++      ++KNG  LG+AF   P      L+
Sbjct  183  DGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINNTCFYTKNGHSLGIAFTDLPP----NLY  238

Query  229  PACVLKNAE--LKFNFGEEEFKFPPKDGFV--------ALSKAPDGYIVKSQHSGNAQVT  278
            P   L+     +  NFG+  F F  +D            + + P G       +   ++ 
Sbjct  239  PTVGLQTPGEVVDANFGQHPFVFDIEDYMREWRTKIQAQIDRFPIGDREGEWQTMIQKMV  298

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG--GVAAR--DQL-  333
             +  + +   A     +R   +QT   +++     +  ++++L++ G  G A     QL 
Sbjct  299  SSYLVHHGYCATAEAFARS-TDQT--VLEELASIKNRQRIQKLVLAGRMGEAIETTQQLY  355

Query  334  -SVLENGVDIV  343
             S+LE   +++
Sbjct  356  PSLLERNPNLL  366


>sp|P21817|RYR1_HUMAN Ryanodine receptor 1 OS=Homo sapiens OX=9606 
GN=RYR1 PE=1 SV=3
Length=5038

 Score = 136 bits (341),  Expect = 3e-31, Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 73/198 (37%), Gaps = 12/198 (6%)

Query  55    AFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSR  114
             A   P +  V   L D+   +  + ++      L  +  N        +   +   C   
Sbjct  1014  ARRNPRL--VPYRLLDEATKRSNRDSLCQAVRTLLGYGYNIEPPDQEPSQVENQSRCDRV  1071

Query  115   EVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWST--MQASLDLGTDKFGFGFGGTGK  172
              +        +  +  G+ Y+E      G  RVGW+   ++  ++LG D+  + F G   
Sbjct  1072  RIFR---AEKSYTVQSGRWYFEFEAVTTGEMRVGWARPELRPDVELGADELAYVFNGHRG  1128

Query  173   KSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGK----DLGLAFEIPPHMKNQALF  228
             +  +   + +G  +   D +GC +D+ +  + F+ NG+    D G               
Sbjct  1129  QRWHLGSEPFGRPWQPGDVVGCMIDLTENTIIFTLNGEVLMSDSGSETAFREIEIGDGFL  1188

Query  229   PACVLKNAEL-KFNFGEE  245
             P C L   ++   N G++
Sbjct  1189  PVCSLGPGQVGHLNLGQD  1206


 Score = 48.6 bits (114),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 36/166 (22%), Positives = 56/166 (34%), Gaps = 28/166 (17%)

Query  118  EWHGCRATKGLMKGKHYYEVSCHD--------QGLCRVGWSTMQA------------SLD  157
                 RA       K Y+EV   +            RVGW+  +                
Sbjct  646  NIFVGRAEGTTQYSKWYFEVMVDEVTPFLTAQATHLRVGWALTEGYTPYPGAGEGWGGNG  705

Query  158  LGTDKFGFGFGGTGKKSHN--KQFDNYGEEFTM-HDTIGCYLDIDKGHVKFSKNGKDLGL  214
            +G D + +GF G    + +  +   + G+      D I C LD+    + F  NG  +  
Sbjct  706  VGDDLYSYGFDGLHLWTGHVARPVTSPGQHLLAPEDVISCCLDLSVPSISFRINGCPVQG  765

Query  215  AFEIPPHMKNQALFPACVLK-NAELKFNFGEE--EFKFPPKDGFVA  257
             FE      +   FP        +++F  G    EFKF P  G+  
Sbjct  766  VFE--SFNLDGLFFPVVSFSAGVKVRFLLGGRHGEFKFLPPPGYAP  809


 Score = 42.8 bits (99),  Expect = 0.017, Method: Composition-based stats.
 Identities = 19/68 (28%), Positives = 33/68 (49%), Gaps = 6/68 (9%)

Query  191   TIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVL---KNAELKFNFGEEEF  247
              IGC +D+  G + F+ NGK+    F++ P+ K   LFPA  +       ++F  G+++ 
Sbjct  1514  VIGCLVDLATGLMTFTANGKESNTFFQVEPNTK---LFPAVFVLPTHQNVIQFELGKQKN  1570

Query  248   KFPPKDGF  255
               P     
Sbjct  1571  IMPLSAAM  1578


>sp|Q9PTY5|RANB9_XENLA Ran-binding protein 9 OS=Xenopus laevis 
OX=8355 GN=ranbp9 PE=2 SV=1
Length=548

 Score = 132 bits (332),  Expect = 3e-31, Method: Composition-based stats.
 Identities = 51/206 (25%), Positives = 78/206 (38%), Gaps = 21/206 (10%)

Query  86   SVLNKWQMNPYDRGSAFAIGSDGLCCQ----SREVKEWHGCRATKGLMK--GKHYYEVSC  139
                 W  +P D+ S   +    L        +  K+    R+T  +    G  Y+EV  
Sbjct  19   PPPRSW--SPRDKCSYLGLSHGNLRVHYKGHGKTSKDAASVRSTHPIPAACGIFYFEVKI  76

Query  140  ---HDQGLCRVGWSTMQASLDL--GTDKFGFGFGGTGKKSH--NKQFDNYGEEFTMHDTI  192
                  G   +G ST   +L+   G DK  +G+ G    S   +     YG  FT  D I
Sbjct  77   ISKGRDGYMGIGLSTQGVNLNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVI  136

Query  193  GCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAE--LKFNFGEEEFKFP  250
            GC +++      ++KNG  LG+AF   P      L+P   L+     +  NFG+  F F 
Sbjct  137  GCCVNLIDNTCFYTKNGHSLGIAFTDLPP----NLYPTVGLQTPGEVVDANFGQSPFVFD  192

Query  251  PKDGFVALSKAPDGYIVKSQHSGNAQ  276
             +D            I +   +G  Q
Sbjct  193  IEDYIREWRSKIQAQIERFPVAGEWQ  218


>sp|Q6VN19|RBP10_MOUSE Ran-binding protein 10 OS=Mus musculus 
OX=10090 GN=Ranbp10 PE=1 SV=2
Length=620

 Score = 133 bits (334),  Expect = 3e-31, Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 77/187 (41%), Gaps = 21/187 (11%)

Query  85   ASVLNKWQMNPYDRGSAFAIGSDGLCCQ----SREVKEWHGCRATKGLMK--GKHYYEVS  138
              +   W  +P D+ +   +    L        +  K+    RAT  +    G +Y+EV 
Sbjct  51   TPLPRSW--SPKDKYNYIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVK  108

Query  139  CHDQG---LCRVGWSTMQASLDL--GTDKFGFGFGGTGKKSH--NKQFDNYGEEFTMHDT  191
               +G      +G S    +++   G DK  +G+ G    S   +     YG  FT  D 
Sbjct  109  IVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDV  168

Query  192  IGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAE--LKFNFGEEEFKF  249
            IGC +++  G   ++KNG  LG+AF   P      L+P   L+     +  NFG++ F F
Sbjct  169  IGCCVNLINGTCFYTKNGHSLGIAFTDLPA----NLYPTVGLQTPGEIVDANFGQQPFLF  224

Query  250  PPKDGFV  256
              +D   
Sbjct  225  DIEDYMR  231


>sp|A3KMV8|RBP10_BOVIN Ran-binding protein 10 OS=Bos taurus OX=9913 
GN=RANBP10 PE=2 SV=1
Length=620

 Score = 133 bits (334),  Expect = 3e-31, Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 77/187 (41%), Gaps = 21/187 (11%)

Query  85   ASVLNKWQMNPYDRGSAFAIGSDGLCCQ----SREVKEWHGCRATKGLMK--GKHYYEVS  138
              +   W  +P D+ +   +    L        +  K+    RAT  +    G +Y+EV 
Sbjct  51   TPLPRSW--SPKDKYNYIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVK  108

Query  139  CHDQG---LCRVGWSTMQASLDL--GTDKFGFGFGGTGKKSH--NKQFDNYGEEFTMHDT  191
               +G      +G S    +++   G DK  +G+ G    S   +     YG  FT  D 
Sbjct  109  IVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDV  168

Query  192  IGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAE--LKFNFGEEEFKF  249
            IGC +++  G   ++KNG  LG+AF   P      L+P   L+     +  NFG++ F F
Sbjct  169  IGCCVNLINGTCFYTKNGHSLGIAFTDLPA----NLYPTVGLQTPGEIVDANFGQQPFLF  224

Query  250  PPKDGFV  256
              +D   
Sbjct  225  DIEDYMR  231


>sp|Q96S59|RANB9_HUMAN Ran-binding protein 9 OS=Homo sapiens OX=9606 
GN=RANBP9 PE=1 SV=1
Length=729

 Score = 134 bits (336),  Expect = 4e-31, Method: Composition-based stats.
 Identities = 66/311 (21%), Positives = 122/311 (39%), Gaps = 40/311 (13%)

Query  64   VYETLKDQQEGKKG--KTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQ----SREVK  117
            + E  K+ Q   K       +    +   W  +P D+ S   +  + L        +  K
Sbjct  140  LNEQEKELQRRLKRLYPAVDEQETPLPRSW--SPKDKFSYIGLSQNNLRVHYKGHGKTPK  197

Query  118  EWHGCRATKGLMK--GKHYYEVSCHDQG---LCRVGWSTMQASLDL--GTDKFGFGFGGT  170
            +    RAT  +    G +Y+EV    +G      +G S    +++   G DK  +G+ G 
Sbjct  198  DAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGD  257

Query  171  GKKSH--NKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALF  228
               S   +     YG  FT  D IGC +++      ++KNG  LG+AF   P      L+
Sbjct  258  DGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINNTCFYTKNGHSLGIAFTDLPP----NLY  313

Query  229  PACVLKNAE--LKFNFGEEEFKFPPKDGFV--------ALSKAPDGYIVKSQHSGNAQVT  278
            P   L+     +  NFG+  F F  +D            + + P G       +   ++ 
Sbjct  314  PTVGLQTPGEVVDANFGQHPFVFDIEDYMREWRTKIQAQIDRFPIGDREGEWQTMIQKMV  373

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIG--GVAAR--DQL-  333
             +  + +   A     +R   +QT   +++     +  ++++L++ G  G A     QL 
Sbjct  374  SSYLVHHGYCATAEAFARS-TDQT--VLEELASIKNRQRIQKLVLAGRMGEAIETTQQLY  430

Query  334  -SVLENGVDIV  343
             S+LE   +++
Sbjct  431  PSLLERNPNLL  441


>sp|E9PZQ0|RYR1_MOUSE Ryanodine receptor 1 OS=Mus musculus OX=10090 
GN=Ryr1 PE=1 SV=1
Length=5035

 Score = 134 bits (338),  Expect = 7e-31, Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 73/199 (37%), Gaps = 14/199 (7%)

Query  55    AFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSR  114
             A   P +  V   L D+   +  + ++      L  +  N              +  QSR
Sbjct  1016  ARRNPRL--VPYRLLDEATKRSNRDSLCQAVRTLLGYGYNIEPPDQE----PSQVDSQSR  1069

Query  115   -EVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWST--MQASLDLGTDKFGFGFGGTG  171
              +         +  +  G+ Y+E      G  RVGW+   ++  ++LG D   + F G  
Sbjct  1070  GDRARIFRAEKSYAVQSGRWYFEFEAVTTGEMRVGWARPELRPDVELGADDLAYVFNGHR  1129

Query  172   KKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGK----DLGLAFEIPPHMKNQAL  227
              +  +   + +G  +   D +GC +D+ +  + F+ NG+    D G              
Sbjct  1130  GQRWHLGSEPFGRPWQSGDVVGCMIDLTENTIIFTLNGEVLMSDSGSETAFRDIEIGDGF  1189

Query  228   FPACVLKNAEL-KFNFGEE  245
              P C L   ++   N G++
Sbjct  1190  LPVCSLGPGQVGHLNLGQD  1208


 Score = 50.5 bits (119),  Expect = 6e-05, Method: Composition-based stats.
 Identities = 36/166 (22%), Positives = 57/166 (34%), Gaps = 28/166 (17%)

Query  118  EWHGCRATKGLMKGKHYYEVSCHDQG--------LCRVGWSTMQA------------SLD  157
                 RA      GK Y+EV   +            RVGW+  +                
Sbjct  648  NIFVGRAEGSTQYGKWYFEVMVDEVAPFLTAQATHLRVGWALSEGYSPYPGGGEGWGGNG  707

Query  158  LGTDKFGFGFGGTGKKSHN--KQFDNYGEEFTM-HDTIGCYLDIDKGHVKFSKNGKDLGL  214
            +G D + +GF G    + +  +   + G+      D + C LD+    + F  NG  +  
Sbjct  708  VGDDLYSYGFDGLHLWTGHVARPVTSPGQHLLAPEDVVSCCLDLSVPSISFRINGCPVQG  767

Query  215  AFEIPPHMKNQALFPACVLK-NAELKFNFGEE--EFKFPPKDGFVA  257
             FE      +   FP        +++F  G    EFKF P  G+  
Sbjct  768  VFE--SFNLDGLFFPVVSFSAGIKVRFLLGGRHGEFKFLPPPGYAP  811


 Score = 42.8 bits (99),  Expect = 0.013, Method: Composition-based stats.
 Identities = 19/68 (28%), Positives = 33/68 (49%), Gaps = 6/68 (9%)

Query  191   TIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVL---KNAELKFNFGEEEF  247
              IGC +D+  G + F+ NGK+    F++ P+ K   LFPA  +       ++F  G+++ 
Sbjct  1516  VIGCLVDLATGLMTFTANGKESNTFFQVEPNTK---LFPAVFVLPTHQNVVQFELGKQKN  1572

Query  248   KFPPKDGF  255
               P     
Sbjct  1573  IMPLSAAM  1580


>sp|A1L252|RANB9_DANRE Ran-binding protein 9 OS=Danio rerio OX=7955 
GN=ranbp9 PE=2 SV=1
Length=597

 Score = 132 bits (331),  Expect = 7e-31, Method: Composition-based stats.
 Identities = 49/206 (24%), Positives = 81/206 (39%), Gaps = 21/206 (10%)

Query  66   ETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQ----SREVKEWHG  121
            E   +Q+  +      +    +   W  +P D+ S   +  + L        +  K+   
Sbjct  26   EKELNQRLRRLYPAVNEQETPLPRSW--SPKDKFSYIGLSQNNLRVHYKGHGKTPKDAAS  83

Query  122  CRATKGLMK--GKHYYEVSC---HDQGLCRVGWSTMQASLDL--GTDKFGFGFGGTGKKS  174
             RAT  +    G +Y+EV        G   +G S    +++   G DK  +G+ G    S
Sbjct  84   VRATHPIPAACGVYYFEVKIISKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHS  143

Query  175  H--NKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACV  232
               +     YG  FT  D IGC +++      ++KNG  LG+AF   P      L+P   
Sbjct  144  FCSSGTGQPYGPTFTTGDVIGCCVNLINNTCFYTKNGHSLGIAFTDLPP----NLYPTVG  199

Query  233  LKNAE--LKFNFGEEEFKFPPKDGFV  256
            L+     +  NFG+  F F  +D   
Sbjct  200  LQTPGEVVDANFGQHPFVFDIEDYMR  225


>sp|Q28FM1|RANB9_XENTR Ran-binding protein 9 OS=Xenopus tropicalis 
OX=8364 GN=ranbp9 PE=2 SV=1
Length=548

 Score = 131 bits (329),  Expect = 9e-31, Method: Composition-based stats.
 Identities = 51/206 (25%), Positives = 76/206 (37%), Gaps = 21/206 (10%)

Query  86   SVLNKWQMNPYDRGSAFAIGSDGLCCQ----SREVKEWHGCRATKGLMK--GKHYYEVSC  139
                 W  +P D+ S   +    L        +  K+    R+T  +    G  Y+EV  
Sbjct  19   PPPRSW--SPRDKCSYLGLSHGNLRVHYKGHGKTSKDAASVRSTHPIPAACGIFYFEVKI  76

Query  140  ---HDQGLCRVGWSTMQASLDL--GTDKFGFGFGGTGKKSH--NKQFDNYGEEFTMHDTI  192
                  G   +G ST   +L    G DK  +G+ G    S   +     YG  FT  D I
Sbjct  77   ISKGRDGYMGIGLSTQGVNLSRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVI  136

Query  193  GCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAE--LKFNFGEEEFKFP  250
            GC +++      ++KNG  LG+AF   P      L+P   L+     +  NFG+  F F 
Sbjct  137  GCCVNLIDNTCFYTKNGHSLGIAFTDLPP----NLYPTVGLQTPGEVVDANFGQSPFVFD  192

Query  251  PKDGFVALSKAPDGYIVKSQHSGNAQ  276
             +D            I +    G  Q
Sbjct  193  IEDYIREWRTKIQAQIERFPVGGEWQ  218


>sp|P16960|RYR1_PIG Ryanodine receptor 1 OS=Sus scrofa OX=9823 
GN=RYR1 PE=2 SV=2
Length=5035

 Score = 134 bits (336),  Expect = 1e-30, Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 74/199 (37%), Gaps = 14/199 (7%)

Query  55    AFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSR  114
             A   P +  V   L D+   +  + ++      L  +  N              +  QSR
Sbjct  1015  ARRNPRL--VPYRLLDEATKRSNRDSLCQAVRTLLGYGYNIEPPDQE----PSQVESQSR  1068

Query  115   -EVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWST--MQASLDLGTDKFGFGFGGTG  171
              +         +  +  G+ Y+E      G  RVGW+   ++  ++LG D+  + F G  
Sbjct  1069  WDRVRIFRAEKSYAVQSGRWYFEFEAVTTGEMRVGWARPELRPDVELGADELAYVFNGHR  1128

Query  172   KKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGK----DLGLAFEIPPHMKNQAL  227
              +  +   + +G  +   D +GC +D+ +  + F+ NG+    D G              
Sbjct  1129  GQRWHLGSELFGRPWQSGDVVGCMIDLTENTIIFTLNGEVLMSDSGSETAFRDIEVGDGF  1188

Query  228   FPACVLKNAEL-KFNFGEE  245
              P C L   ++   N G++
Sbjct  1189  LPVCSLGPGQVGHLNLGQD  1207


 Score = 48.2 bits (113),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 70/209 (33%), Gaps = 33/209 (16%)

Query  118  EWHGCRATKGLMKGKHYYEVSCHD--------QGLCRVGWSTMQA------------SLD  157
                 RA       K Y+EV   +            RVGW+  +                
Sbjct  647  NIFVGRAEGTTQYSKWYFEVMVDEVVPFLTAQATHLRVGWALTEGYSPYPGGGEGWGGNG  706

Query  158  LGTDKFGFGFGGTGKKSHNKQF--DNYGEEFTM-HDTIGCYLDIDKGHVKFSKNGKDLGL  214
            +G D + +GF G    + +      + G+      D + C LD+    + F  NG  +  
Sbjct  707  VGDDLYSYGFDGLHLWTGHVPRLVTSPGQHLLAPEDVVSCCLDLSVPSISFRINGCPVQG  766

Query  215  AFEIPPHMKNQALFPACVLK-NAELKFNFGEE--EFKFPPKDGFVALSKAPDGYIVKSQH  271
             FE      N   FP        +++F  G    EFKF P  G+    +A    + + + 
Sbjct  767  VFEAFN--LNGLFFPVVSFSAGVKVRFLLGGRHGEFKFLPPPGYAPCHEA---VLPRERL  821

Query  272  SGNAQVTQTKFLPNAPKALIVEPSRELAE  300
                     +  P  P   +V PSR L+ 
Sbjct  822  RLEPIKEYRREGPRGPH--LVGPSRCLSH  848


 Score = 42.8 bits (99),  Expect = 0.017, Method: Composition-based stats.
 Identities = 19/68 (28%), Positives = 33/68 (49%), Gaps = 6/68 (9%)

Query  191   TIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVL---KNAELKFNFGEEEF  247
              IGC +D+  G + F+ NGK+    F++ P+ K   LFPA  +       ++F  G+++ 
Sbjct  1515  VIGCLVDLATGLMTFTANGKESNTFFQVEPNTK---LFPAVFVLPTHQNVIQFELGKQKN  1571

Query  248   KFPPKDGF  255
               P     
Sbjct  1572  IMPLSAAM  1579


>sp|P11716|RYR1_RABIT Ryanodine receptor 1 OS=Oryctolagus cuniculus 
OX=9986 GN=RYR1 PE=1 SV=1
Length=5037

 Score = 132 bits (333),  Expect = 3e-30, Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 74/199 (37%), Gaps = 14/199 (7%)

Query  55    AFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSR  114
             A   P +  V   L D+   +  + ++      L  +  N              +  QSR
Sbjct  1015  ARRNPRL--VPYRLLDEATKRSNRDSLCQAVRTLLGYGYNIEPPDQE----PSQVENQSR  1068

Query  115   -EVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWST--MQASLDLGTDKFGFGFGGTG  171
              +         +  +  G+ Y+E      G  RVGW+   ++  ++LG D+  + F G  
Sbjct  1069  WDRVRIFRAEKSYTVQSGRWYFEFEAVTTGEMRVGWARPELRPDVELGADELAYVFNGHR  1128

Query  172   KKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGK----DLGLAFEIPPHMKNQAL  227
              +  +   + +G  +   D +GC +D+ +  + F+ NG+    D G              
Sbjct  1129  GQRWHLGSEPFGRPWQSGDVVGCMIDLTENTIIFTLNGEVLMSDSGSETAFREIEIGDGF  1188

Query  228   FPACVLKNAEL-KFNFGEE  245
              P C L   ++   N G++
Sbjct  1189  LPVCSLGPGQVGHLNLGQD  1207


 Score = 51.3 bits (121),  Expect = 4e-05, Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 72/209 (34%), Gaps = 33/209 (16%)

Query  118  EWHGCRATKGLMKGKHYYEVSCHD--------QGLCRVGWSTMQA------------SLD  157
                 RA      GK Y+EV   +            RVGW+  +                
Sbjct  647  NIFVGRAEGSTQYGKWYFEVMVDEVVPFLTAQATHLRVGWALTEGYSPYPGGGEGWGGNG  706

Query  158  LGTDKFGFGFGGTGKKSHN--KQFDNYGEEFTM-HDTIGCYLDIDKGHVKFSKNGKDLGL  214
            +G D + +GF G    + +  +   + G+      D + C LD+    + F  NG  +  
Sbjct  707  VGDDLYSYGFDGLHLWTGHVARPVTSPGQHLLAPEDVVSCCLDLSVPSISFRINGCPVQG  766

Query  215  AFEIPPHMKNQALFPACVLK-NAELKFNFGEE--EFKFPPKDGFVALSKAPDGYIVKSQH  271
             FE      +   FP        +++F  G    EFKF P  G+    +A    + + + 
Sbjct  767  VFEAFN--LDGLFFPVVSFSAGVKVRFLLGGRHGEFKFLPPPGYAPCHEA---VLPRERL  821

Query  272  SGNAQVTQTKFLPNAPKALIVEPSRELAE  300
                     +  P  P   +V PSR L+ 
Sbjct  822  RLEPIKEYRREGPRGPH--LVGPSRCLSH  848


 Score = 42.8 bits (99),  Expect = 0.017, Method: Composition-based stats.
 Identities = 19/68 (28%), Positives = 33/68 (49%), Gaps = 6/68 (9%)

Query  191   TIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVL---KNAELKFNFGEEEF  247
              IGC +D+  G + F+ NGK+    F++ P+ K   LFPA  +       ++F  G+++ 
Sbjct  1515  VIGCLVDLATGLMTFTANGKESNTFFQVEPNTK---LFPAVFVLPTHQNVIQFELGKQKN  1571

Query  248   KFPPKDGF  255
               P     
Sbjct  1572  IMPLSAAM  1579


>sp|P0CR10|DBP9_CRYNJ ATP-dependent RNA helicase DBP9 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain JEC21 
/ ATCC MYA-565) OX=214684 GN=DBP9 PE=3 SV=1
Length=627

 Score = 129 bits (323),  Expect = 9e-30, Method: Composition-based stats.
 Identities = 76/367 (21%), Positives = 133/367 (36%), Gaps = 71/367 (19%)

Query  229  PACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP----  284
            P   L ++ +     +++F  P      A+    +G  V ++    +  T    +P    
Sbjct  23   PFSTLIDSRVLVALADQKFAHPTLVQAKAIPLLLEGKDVLARARTGSGKTAAYIVPAVQK  82

Query  285  ---------------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAA  329
                            A +A+I+ P++ELA Q  +  K   KY D       +  GG + 
Sbjct  83   ILEAKADLSPASAEYQATRAIILVPTKELALQVSSFTKNVTKYCDGLVQCVDVAAGGASI  142

Query  330  RDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHN  389
              Q  +L +  DIV+ TP +L  L+ +  L+LSQ+ FL +DEAD LLS G+ D + R+ +
Sbjct  143  --QRVLLNDKPDIVISTPTKLLSLLQSKSLSLSQLSFLAIDEADLLLSYGFKDDLTRIMD  200

Query  390  QIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN  449
                       +Q  + SATL S DV+ +   ++  P  + L    S    +       +
Sbjct  201  PTSGWIPKL-GVQGCLMSATL-SDDVEGIKGLVLRNPAILTLSEPASASSLLSQHYTHTS  258

Query  450  PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA  509
             +   L                                 I +L     +R        ++
Sbjct  259  ERDKFLL--------------------------------IYVLLKLKLIR-------GKS  279

Query  510  IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL  569
            IIF         ++ +  Q G           C  ++ +     R   +E F +G    +
Sbjct  280  IIFVNDVERGYRVKLFLEQFG---------VKCCVVNSELPLASRYHVVEEFNRGVYDVV  330

Query  570  ICTDVAA  576
            + TD  A
Sbjct  331  VATDEGA  337


 Score = 91.3 bits (225),  Expect = 9e-18, Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 9/113 (8%)

Query  3    AFSEMGVM----PEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSI  58
            +FS+          +  A+ +  +  PT +QA++IPL+L G DVL  A TGSGKT A+ +
Sbjct  18   SFSQPPFSTLIDSRVLVALADQKFAHPTLVQAKAIPLLLEGKDVLARARTGSGKTAAYIV  77

Query  59   PVIQIVYETLKDQQE-GKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLC  110
            P +Q + E   D      + + T         +  +    + S+F       C
Sbjct  78   PAVQKILEAKADLSPASAEYQATRAIILVPTKELAL----QVSSFTKNVTKYC  126


 Score = 83.3 bits (204),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 44/185 (24%), Positives = 64/185 (35%), Gaps = 33/185 (18%)

Query  572  TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT----------  621
            T   ARGID      VIN  LP    +Y+HR+GR  RA + GLA+S V            
Sbjct  405  TSSLARGIDFTSASSVINFDLPLTSTSYMHRVGRTARAGQSGLALSFVVPRENWGKDKAV  464

Query  622  ------EKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEP  675
                  + EKV+  +   R K   ++ +KE                +E+ L     +   
Sbjct  465  SIKSAEKDEKVFERI-KERVKKESDSEIKEWDWKGRKGEIEGFRYRMEDALKAVTGKRVA  523

Query  676  DIKVPVDEF----DGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKEAQTSFLHLGY  731
            + +            K+           SY  H   L P  Q+             HL +
Sbjct  524  EARREEVRRELLNSEKLKSHFAANPLDLSYLRHDAPLHPARQQ------------THLKH  571

Query  732  LPNQL  736
            +PN L
Sbjct  572  VPNYL  576


>sp|P0CR11|DBP9_CRYNB ATP-dependent RNA helicase DBP9 OS=Cryptococcus 
neoformans var. neoformans serotype D (strain B-3501A) 
OX=283643 GN=DBP9 PE=3 SV=1
Length=627

 Score = 129 bits (323),  Expect = 9e-30, Method: Composition-based stats.
 Identities = 76/367 (21%), Positives = 133/367 (36%), Gaps = 71/367 (19%)

Query  229  PACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP----  284
            P   L ++ +     +++F  P      A+    +G  V ++    +  T    +P    
Sbjct  23   PFSTLIDSRVLVALADQKFAHPTLVQAKAIPLLLEGKDVLARARTGSGKTAAYIVPAVQK  82

Query  285  ---------------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAA  329
                            A +A+I+ P++ELA Q  +  K   KY D       +  GG + 
Sbjct  83   ILEAKADLSPASAEYQATRAIILVPTKELALQVSSFTKNVTKYCDGLVQCVDVAAGGASI  142

Query  330  RDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHN  389
              Q  +L +  DIV+ TP +L  L+ +  L+LSQ+ FL +DEAD LLS G+ D + R+ +
Sbjct  143  --QRVLLNDKPDIVISTPTKLLSLLQSKSLSLSQLSFLAIDEADLLLSYGFKDDLTRIMD  200

Query  390  QIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN  449
                       +Q  + SATL S DV+ +   ++  P  + L    S    +       +
Sbjct  201  PTSGWIPKL-GVQGCLMSATL-SDDVEGIKGLVLRNPAILTLSEPASASSLLSQHYTHTS  258

Query  450  PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA  509
             +   L                                 I +L     +R        ++
Sbjct  259  ERDKFLL--------------------------------IYVLLKLKLIR-------GKS  279

Query  510  IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL  569
            IIF         ++ +  Q G           C  ++ +     R   +E F +G    +
Sbjct  280  IIFVNDVERGYRVKLFLEQFG---------VKCCVVNSELPLASRYHVVEEFNRGVYDVV  330

Query  570  ICTDVAA  576
            + TD  A
Sbjct  331  VATDEGA  337


 Score = 91.3 bits (225),  Expect = 9e-18, Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 9/113 (8%)

Query  3    AFSEMGVM----PEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSI  58
            +FS+          +  A+ +  +  PT +QA++IPL+L G DVL  A TGSGKT A+ +
Sbjct  18   SFSQPPFSTLIDSRVLVALADQKFAHPTLVQAKAIPLLLEGKDVLARARTGSGKTAAYIV  77

Query  59   PVIQIVYETLKDQQE-GKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLC  110
            P +Q + E   D      + + T         +  +    + S+F       C
Sbjct  78   PAVQKILEAKADLSPASAEYQATRAIILVPTKELAL----QVSSFTKNVTKYC  126


 Score = 83.3 bits (204),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 44/185 (24%), Positives = 64/185 (35%), Gaps = 33/185 (18%)

Query  572  TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT----------  621
            T   ARGID      VIN  LP    +Y+HR+GR  RA + GLA+S V            
Sbjct  405  TSSLARGIDFTSASSVINFDLPLTSTSYMHRVGRTARAGQSGLALSFVVPRENWGKDKAV  464

Query  622  ------EKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEP  675
                  + EKV+  +   R K   ++ +KE                +E+ L     +   
Sbjct  465  SIKSAEKDEKVFERI-KERVKKESDSEIKEWDWKGRKGEIEGFRYRMEDALKAVTGKRVA  523

Query  676  DIKVPVDEF----DGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKEAQTSFLHLGY  731
            + +            K+           SY  H   L P  Q+             HL +
Sbjct  524  EARREEVRRELLNSEKLKSHFAANPLDLSYLRHDAPLHPARQQ------------THLKH  571

Query  732  LPNQL  736
            +PN L
Sbjct  572  VPNYL  576


>sp|Q4Z8K6|RBP9X_DROME Ran-binding proteins 9/10 homolog OS=Drosophila 
melanogaster OX=7227 GN=RanBPM PE=1 SV=1
Length=962

 Score = 125 bits (314),  Expect = 3e-28, Method: Composition-based stats.
 Identities = 45/178 (25%), Positives = 74/178 (42%), Gaps = 19/178 (11%)

Query  94   NPYDRGSAFAIGSDGLCCQ----SREVKEWHGCRATKGLMK--GKHYYEVSC---HDQGL  144
            +P+D+  +  +  + L        ++  +    R    +    G +Y+EV        G 
Sbjct  423  SPHDKCLSIGLSQNNLRVTYKGVGKQHSDAASVRTAYPIPSSCGLYYFEVRIISKGRNGY  482

Query  145  CRVGWSTMQASLDL--GTDKFGFGFGGTGKKSHNKQF--DNYGEEFTMHDTIGCYLDIDK  200
              +G +  Q  ++   G DK  +G+ G    S +       YG  FT  D IGC ++   
Sbjct  483  MGIGLTAQQFRMNRLPGWDKQSYGYHGDDGNSFSSSGNGQTYGPTFTTGDVIGCCVNFVN  542

Query  201  GHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNA--ELKFNFGEEEFKFPPKDGFV  256
                ++KNG DLG+AF   P      L+P   L+    E+  NFG+E FKF      +
Sbjct  543  NTCFYTKNGVDLGIAFRDLP----TKLYPTVGLQTPGEEVDANFGQEPFKFDKIVDMM  596


>sp|Q15413|RYR3_HUMAN Ryanodine receptor 3 OS=Homo sapiens OX=9606 
GN=RYR3 PE=1 SV=3
Length=4870

 Score = 125 bits (314),  Expect = 5e-28, Method: Composition-based stats.
 Identities = 37/189 (20%), Positives = 72/189 (38%), Gaps = 9/189 (5%)

Query  68    LKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATKG  127
             L D++  K  + +++        +  N        A     +   S +   +     +  
Sbjct  1024  LLDERTKKSNRDSLREAVRTFVGYGYNIEPSDQELADS--AVEKVSIDKIRFFRVERSYA  1081

Query  128   LMKGKHYYEVSCHDQGLCRVGWST--MQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEE  185
             +  GK Y+E      G  RVGW+    +  ++LG D   F F G   +  ++    +G  
Sbjct  1082  VRSGKWYFEFEVVTGGDMRVGWARPGCRPDVELGADDQAFVFEGNRGQRWHQGSGYFGRT  1141

Query  186   FTMHDTIGCYLDIDKGHVKFSKNGKDL----GLAFEIPPHMKNQALFPACVLKNAEL-KF  240
             +   D +GC +++D   + F+ NG+ L    G       +       P C L  +++ + 
Sbjct  1142  WQPGDVVGCMINLDDASMIFTLNGELLITNKGSELAFADYEIENGFVPICCLGLSQIGRM  1201

Query  241   NFGEEEFKF  249
             N G +   F
Sbjct  1202  NLGTDASTF  1210


 Score = 47.4 bits (111),  Expect = 6e-04, Method: Composition-based stats.
 Identities = 32/154 (21%), Positives = 52/154 (34%), Gaps = 32/154 (21%)

Query  132  KHYYEVSC--------HDQGLCRVGWSTMQA------------SLDLGTDKFGFGFGGTG  171
            K Y+E+           +    RVGW++                  +G D + +GF G  
Sbjct  659  KWYFELIIDQVDPFLTAEPTHLRVGWASSSGYAPYPGGGEGWGGNGVGDDLYSYGFDG--  716

Query  172  KKSHNKQFDNYGEEFTMH-----DTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQA  226
                + +          H     D + C LD+    + F  NG+ +   FE      +  
Sbjct  717  LHLWSGRIPRAVASINQHLLRSDDVVSCCLDLGVPSISFRINGQPVQGMFENFN--TDGL  774

Query  227  LFPACVLK-NAELKFNFGEE--EFKFPPKDGFVA  257
             FP        +++F  G    EFKF P  G+  
Sbjct  775  FFPVMSFSAGVKVRFLMGGRHGEFKFLPPSGYAP  808


 Score = 41.7 bits (96),  Expect = 0.030, Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 34/67 (51%), Gaps = 6/67 (9%)

Query  192   IGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLK---NAELKFNFGEEEFK  248
             IGC +D+  G + FS NGK+LG  +++ P+ K    FPA  L+    +  +F  G+ +  
Sbjct  1411  IGCLVDLAMGMLSFSANGKELGTCYQVEPNTKV---FPAVFLQPTSTSLFQFELGKLKNA  1467

Query  249   FPPKDGF  255
              P     
Sbjct  1468  MPLSAAI  1474


>sp|A2AGL3|RYR3_MOUSE Ryanodine receptor 3 OS=Mus musculus OX=10090 
GN=Ryr3 PE=1 SV=1
Length=4863

 Score = 124 bits (311),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 36/190 (19%), Positives = 72/190 (38%), Gaps = 11/190 (6%)

Query  68    LKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA-IGSDGLCCQSREVKEWHGCRATK  126
             L D++  K  + +++        +  N        A    + +         +     + 
Sbjct  1024  LLDERTKKSNRDSLREAVRTFVGYGYNIEPSDQELADPTVEKVSID---KIRFFRVERSY  1080

Query  127   GLMKGKHYYEVSCHDQGLCRVGWST--MQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGE  184
              +  GK Y+E      G  RVGW+    +  ++LG D   F F G+  +  ++    +G 
Sbjct  1081  AVKSGKWYFEFEVVTGGDMRVGWARPGCRPDIELGADDQAFVFEGSRGQRWHQGSGYFGR  1140

Query  185   EFTMHDTIGCYLDIDKGHVKFSKNGKDL----GLAFEIPPHMKNQALFPACVLKNAEL-K  239
              +   D +GC +++D   + F+ NG+ L    G       +       P C L  +++ +
Sbjct  1141  TWQPGDVVGCMINLDDASMVFTLNGELLITNKGSELAFADYEIENGFVPICSLGLSQIGR  1200

Query  240   FNFGEEEFKF  249
              N G +   F
Sbjct  1201  MNLGTDASTF  1210


 Score = 47.4 bits (111),  Expect = 6e-04, Method: Composition-based stats.
 Identities = 32/154 (21%), Positives = 52/154 (34%), Gaps = 32/154 (21%)

Query  132  KHYYEVSC--------HDQGLCRVGWSTMQA------------SLDLGTDKFGFGFGGTG  171
            K Y+E+           +    RVGW++                  +G D + +GF G  
Sbjct  659  KWYFELIIDQVEPFLTAEPTHLRVGWASSSGYAPYPGGGEGWGGNGVGDDLYSYGFDG--  716

Query  172  KKSHNKQFDNYGEEFTMH-----DTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQA  226
                + +          H     D + C LD+    + F  NG+ +   FE      +  
Sbjct  717  LHLWSGRIPRAVASINQHLLKSDDVVSCCLDLGVPSISFRINGQPVQGMFENFN--TDGL  774

Query  227  LFPACVLK-NAELKFNFGEE--EFKFPPKDGFVA  257
             FP        +++F  G    EFKF P  G+  
Sbjct  775  FFPVMSFSAGVKVRFLMGGRHGEFKFLPPSGYAP  808


 Score = 41.7 bits (96),  Expect = 0.034, Method: Composition-based stats.
 Identities = 22/67 (33%), Positives = 34/67 (51%), Gaps = 6/67 (9%)

Query  192   IGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLK---NAELKFNFGEEEFK  248
             IGC LD+  G + FS NGK+LG  +++ P+ K    FPA  L+    +  +F  G+ +  
Sbjct  1411  IGCLLDLAMGMLSFSANGKELGTCYQVEPNTKV---FPAVFLQPTSTSLFQFELGKLKNA  1467

Query  249   FPPKDGF  255
              P     
Sbjct  1468  MPLSAAI  1474


>sp|F1LMY4|RYR1_RAT Ryanodine receptor 1 OS=Rattus norvegicus 
OX=10116 GN=Ryr1 PE=1 SV=1
Length=5035

 Score = 122 bits (307),  Expect = 3e-27, Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 72/199 (36%), Gaps = 15/199 (8%)

Query  55    AFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSR  114
             A   P +  V   L D+   +  + ++      L  +  N              +  QSR
Sbjct  1016  ARRNPRL--VPYRLLDEATKRSNRDSLCQAVRTLLGYGYNIEPPDQE----PSQVDSQSR  1069

Query  115   -EVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWST--MQASLDLGTDKFGFGFGGTG  171
              +         +  +  G+ Y+E      G   +GW+   ++  ++LG D   + F G  
Sbjct  1070  GDRARIFRAEKSYAVQSGRWYFEFEAVTTGR-ELGWARPELRPDVELGADDLAYVFNGHR  1128

Query  172   KKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGK----DLGLAFEIPPHMKNQAL  227
              +  +   + +G  +   D +GC +D+ +  + F+ NG+    D G              
Sbjct  1129  GQRWHLGSEPFGRPWQSGDVVGCMIDLTENTIIFTLNGEVLMSDSGSETAFREIEIGDGF  1188

Query  228   FPACVLKNAEL-KFNFGEE  245
              P C L   ++   N G++
Sbjct  1189  LPVCSLGPGQVGHLNLGQD  1207


 Score = 50.5 bits (119),  Expect = 6e-05, Method: Composition-based stats.
 Identities = 36/166 (22%), Positives = 57/166 (34%), Gaps = 28/166 (17%)

Query  118  EWHGCRATKGLMKGKHYYEVSCHDQG--------LCRVGWSTMQA------------SLD  157
                 RA      GK Y+EV   +            RVGW+  +                
Sbjct  648  NIFVGRAEGSTQYGKWYFEVMVDEVAPFLTAQATHLRVGWALSEGYSPYPGGGEGWGGNG  707

Query  158  LGTDKFGFGFGGTGKKSHN--KQFDNYGEEF-TMHDTIGCYLDIDKGHVKFSKNGKDLGL  214
            +G D + +GF G    + +  +   + G+      D + C LD+    + F  NG  +  
Sbjct  708  VGDDLYSYGFDGLHLWTGHVARPVTSPGQHLLGPEDVVSCCLDLSVPSISFRINGCPVQG  767

Query  215  AFEIPPHMKNQALFPACVLK-NAELKFNFGEE--EFKFPPKDGFVA  257
             FE      +   FP        +++F  G    EFKF P  G+  
Sbjct  768  VFE--SFNLDGLFFPVVSFSAGIKVRFLLGGRHGEFKFLPPPGYAP  811


 Score = 41.3 bits (95),  Expect = 0.041, Method: Composition-based stats.
 Identities = 22/71 (31%), Positives = 34/71 (48%), Gaps = 7/71 (10%)

Query  191   TIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFP  250
              IGC +D+  G + F+ NGK+    F++ P+ K   LFPA  +    L  +    +F   
Sbjct  1515  VIGCLVDLATGLMTFTANGKESNTFFQVEPNTK---LFPAVFV----LPTHQNVVQFDLR  1567

Query  251   PKDGFVALSKA  261
             P    + LS A
Sbjct  1568  PGANIMPLSAA  1578


>sp|O88700|BLM_MOUSE RecQ-like DNA helicase BLM OS=Mus musculus 
OX=10090 GN=Blm PE=1 SV=1
Length=1416

 Score = 118 bits (295),  Expect = 7e-26, Method: Composition-based stats.
 Identities = 69/442 (16%), Positives = 138/442 (31%), Gaps = 68/442 (15%)

Query  212   LGLAFEIPPHMKNQAL-FPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
               L+ + P H   Q+L FP            FG   F+    +   A     D +I+   
Sbjct  640   QNLSSKNPKHEHFQSLNFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPT  699

Query  271   HSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKY--------IDNPKLRELL  322
               G +   Q     +    +++ P R L    ++ +++   +         D        
Sbjct  700   GGGKSLCYQLPACVSPGVTIVISPLRSL---IVDQVQKLTSFDIPATYLTGDKTDSEAAN  756

Query  323   IIGGVAARD-QLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYS  381
             I   ++ +D  + +L    + V  +  RL   +         +   V+DEA  +   G+ 
Sbjct  757   IYLQLSKKDPIIKLLYVTPEKVCAS-NRLISTLE-NLYERKLLARFVIDEAHCVSQWGH-  813

Query  382   DFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV  441
                 + + ++  +      + V+  +AT +    K +  ++        +         +
Sbjct  814   -DFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQL--KILRPQVFSMSFNRHNL  870

Query  442   HHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI  501
              + V+P  PK                                           +      
Sbjct  871   KYYVLPKKPKKVAF---------------------------------------DCLEWIR  891

Query  502   KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF  561
             K H  D  II+C ++ +CD +     ++G          + +  H       R +   ++
Sbjct  892   KHHPYDSGIIYCLSRRECDTMADTLQREG---------LAALAYHAGLSDSARDEVQHKW  942

Query  562   KKGDVRFLIC-TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
                D   +IC T     GID   V +VI+ +LP   + Y    GR GR   +   +    
Sbjct  943   INQDNCQVICATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCVLFYT  1002

Query  621   TEKEKVWYHVCSSRGKGCYNTR  642
                      +      G Y+T+
Sbjct  1003  YHDVTRLKRLIMMEKDGNYHTK  1024


>sp|Q24498|RYR_DROME Ryanodine receptor OS=Drosophila melanogaster 
OX=7227 GN=RyR PE=1 SV=3
Length=5127

 Score = 117 bits (294),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 37/200 (19%), Positives = 77/200 (39%), Gaps = 18/200 (9%)

Query  59    PVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVK-  117
             P +    +  +  ++  +   +      ++  + ++P         G++ L  +++ +K 
Sbjct  1021  PHLVPYAKVDEAIKKANRDTASETVRTLLVYGYVLDPPT-----GEGTEALLAEAQRLKF  1075

Query  118   ---EWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQA--SLDLGTDKFGFGFGGTGK  172
                  +       +  GK Y+E      G  RVGW+         LG++   + F G   
Sbjct  1076  AGFRTYRVERNYAVTSGKWYFEFEVLTSGPMRVGWARADCYPGAMLGSEDTSWAFDGHNV  1135

Query  173   -KSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKD----LGLAFEIPPHMK-NQA  226
              K H    +++G  +   D IGC++D+ +  + FS NG+     LG              
Sbjct  1136  TKMHAGSIEHFGVRYEAGDVIGCFIDVKEQTISFSLNGELLMDALGGETTFADVTAEGVG  1195

Query  227   LFPACVLK-NAELKFNFGEE  245
               PAC L    + +  +G++
Sbjct  1196  FVPACTLGVGQKARLIYGQD  1215


 Score = 56.3 bits (134),  Expect = 1e-06, Method: Composition-based stats.
 Identities = 36/159 (23%), Positives = 56/159 (35%), Gaps = 35/159 (22%)

Query  132  KHYYEVSC-------HDQGLCRVGWSTMQA------------SLDLGTDKFGFGFGG---  169
            K Y+EV+        H     R+GW+                   +G D + FGF G   
Sbjct  665  KWYFEVTMDHIEQTTHMMPHLRIGWANTSGYVPYPGGGKKWGGNGVGDDLYSFGFDGAFL  724

Query  170  -TGKKS----HNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKN  224
             TG +          + +       D IG  +D+    + F+ NG  +  +F       +
Sbjct  725  WTGGRKTLVVDALPEEPF---IRKGDVIGVAIDLSVPIITFTFNGVKVRGSFR--DFNLD  779

Query  225  QALFPACVLKNAE-LKFNFGEE--EFKFPPKDGFVALSK  260
               FP     +    +F FG +    KF P  GF AL +
Sbjct  780  GMFFPVMSCSSKLSCRFLFGGDHGRLKFAPPMGFSALVQ  818


>sp|Q05549|HRQ1_YEAST ATP-dependent helicase HRQ1 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=HRQ1 
PE=1 SV=1
Length=1077

 Score = 114 bits (286),  Expect = 6e-25, Method: Composition-based stats.
 Identities = 83/515 (16%), Positives = 159/515 (31%), Gaps = 52/515 (10%)

Query  184  EEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFG  243
              ++ +  I     + +           +   F IP           C     E+     
Sbjct  230  PNYSNNSVITTIPQMIEKLKSTEFYASQIKHCFTIPSRTAK--YKGLCFELAPEVYQGME  287

Query  244  EEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTK-----FLPNAPKALIVEPSREL  298
             E F     D   +L +  +  I  S  SG + + Q               + + P++ L
Sbjct  288  HENFYSHQADAINSLHQGENVIITTSTSSGKSLIYQLAAIDLLLKDPESTFMYIFPTKAL  347

Query  299  AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGK  358
            A+      K     I   K   +    G    ++ + +     ++   P  +   +    
Sbjct  348  AQDQKRAFKVILSKIPELKNAVVDTYDGDTEPEERAYIRKNARVIFTNPDMIHTSILPNH  407

Query  359  LN----LSQVRFLVLDEAD---GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLH  411
             N    L  ++ +V+DE     GL     +  + R+         +   LQ I CSATL 
Sbjct  408  ANWRHFLYHLKLVVVDELHIYKGLFGSHVALVMRRLLRLC-HCFYENSGLQFISCSATLK  466

Query  412  SFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHA  471
            S  V+ + +        V L  ED  P    H+VV   P                     
Sbjct  467  SP-VQHMKDMFGIN--EVTLIHEDGSPTGAKHLVVWNPP---------------------  502

Query  472  KDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGG  531
                      P+   +    ++    +         + I FC  +  C+ L +       
Sbjct  503  --------ILPQHERKRENFIRESAKILVQLILNNVRTIAFCYVRRVCELLMKEVRNIFI  554

Query  532  GPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT  591
               ++      +   G     +R++       G+++ +I T+    GIDI G+  V+   
Sbjct  555  ETGREDLVTEVMSYRGGYSASDRRKIEREMFHGNLKAVISTNALELGIDIGGLDAVLMCG  614

Query  592  LPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTI  651
             P    N+  + GR GR      +++LV      V  H  +           +      +
Sbjct  615  FPLSMANFHQQSGRAGRRNND--SLTLVVASDSPVDQHYVAHPESLLEVNNFESYQDLVL  672

Query  652  WYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDG  686
             +N + +L   E H+ C   ++  + +     F  
Sbjct  673  DFNNILIL---EGHIQCAAFELPINFERDKQYFTE  704


>sp|Q58969|Y1574_METJA Uncharacterized ATP-dependent helicase 
MJ1574 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / 
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ1574 
PE=3 SV=1
Length=684

 Score = 114 bits (284),  Expect = 7e-25, Method: Composition-based stats.
 Identities = 85/508 (17%), Positives = 179/508 (35%), Gaps = 71/508 (14%)

Query  213  GLAFEIPPHMK---NQALFPACVLKNAELKFNFGEEEFKFP--PKDGFVALSKAPDGYIV  267
            G+  EI    K    +  F     KN E+        FK           L    D  + 
Sbjct  7    GIEKEIIKIYKIPERKGRFSNFKFKNKEINELIDALGFKLYLHQVKALKYLYNKKDVVVT  66

Query  268  KSQHSGNAQVTQTKFLPNAP-----KALIVEPSRELAEQTLNNI---KQFKKYIDNPKLR  319
             S  SG +++ +     N       + L++ P+R L            +    I N +++
Sbjct  67   TSTASGKSEIFRLAIFDNFLSNPDDRYLLIYPTRALINNQYEKFSMENELFYKITNKRVK  126

Query  320  ELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN----LSQVRFLVLDEADGL  375
              ++ G V    +  +L++  +++  TP  L   +     N    L  ++ LV+DE    
Sbjct  127  AEILTGDVGLEKRREILKDKPNVLFTTPDMLHYQILKNHNNYLWLLKNLKLLVVDELHVY  186

Query  376  LSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED  435
                 ++ +      +  +      LQ++  SAT             +  P         
Sbjct  187  RGVFGTNMVYVFKRLLKLLKRLNNNLQILCLSAT-------------LKNPKE-------  226

Query  436  SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGE  495
                        V    +R +E + KS+  +   +         ++ ++    I+ L   
Sbjct  227  -----------FVKLLFNRDFEVVDKSYNPSSRKYLAILEPKNLDNKQLLRRLIENLVDN  275

Query  496  YAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERK  555
                        + ++F  T+ + + L ++ +            +      G    + R+
Sbjct  276  NI----------KTLVFFDTRKETEKLMRFLLN-------SKVFYKLSTYKGTLPKYVRE  318

Query  556  QNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDE-KQNYVHRIGRVGRAERMGL  614
            +  E+FK G++  L+ T+    GIDI  +  VIN  +P +   + + R GR GR ++  L
Sbjct  319  EIEEKFKNGEILALLTTNALELGIDIGDLDAVINYGIPPDGIFSLIQRFGRAGRRDKEAL  378

Query  615  AISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVE  674
             I ++  +    +Y          Y  R+++     +  N        ++HL+  IS+++
Sbjct  379  NIIVLRKDGLDYYY---KEHLNELYE-RIRKGIIEYMPVNIKNRFV-TKKHLHYLISELK  433

Query  675  PDIKVPVDEFDGKVTYGQKRAAGGGSYK  702
                  +++F+ ++    +R      YK
Sbjct  434  IVDFDELNDFEKEIVKELEREGKIKIYK  461


>sp|Q9DEY9|BLM_XENLA RecQ-like DNA helicase BLM OS=Xenopus laevis 
OX=8355 GN=blm PE=2 SV=1
Length=1364

 Score = 114 bits (286),  Expect = 8e-25, Method: Composition-based stats.
 Identities = 69/443 (16%), Positives = 136/443 (31%), Gaps = 70/443 (16%)

Query  212  LGLAFEIPPHMKNQAL-FPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQ  270
            L    E P H + +   FP            FG   F+    +   A     D +I+   
Sbjct  584  LKPQIENPAHERFRGFNFPHSKEMMKIFHKKFGLHRFRTNQLEAINACLCGEDCFILMPT  643

Query  271  HSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKY--------IDNPKLRELL  322
              G +   Q     +    +++ P R L    ++ +++             D        
Sbjct  644  GGGKSLCYQLPGCISPGVTIVISPLRSL---IVDQVQKLTSLDIPATYLTGDKTDAEAAS  700

Query  323  IIGGVAARD-QLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYS  381
            I   ++ +D  + +L    + V  +  RL   +         +   V+DEA  +   G+ 
Sbjct  701  IYLQLSKKDPIIKLLYVTPEKVCAST-RLISTME-NLYERQLLARFVIDEAHCVSQWGH-  757

Query  382  DFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKI-MHFPTWVDLKGEDSVPDT  440
                  + ++  +    + + ++  +AT +    K +  ++ M  P    +       D 
Sbjct  758  -DFRPDYKRLNVLRQKFQSVPMMALTATANPRVKKDILNQLKMTKP---QIFTMSFNRDN  813

Query  441  VHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRA  500
            + + V+P  PK   L                                       +     
Sbjct  814  LKYEVLPKKPKRVAL---------------------------------------DCVEWI  834

Query  501  IKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLER  560
             K H  D  II+C ++ +CD +     ++G          + +  H       R     +
Sbjct  835  KKHHPNDSGIIYCLSRHECDTMADTLQKEG---------LAALAYHAGLADSNRDYVQHK  885

Query  561  FKKGD-VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +   D  + +  T     GID   V YVI+ +LP   + Y    GR GR       +   
Sbjct  886  WINQDDCQVICATIAFGMGIDKPDVRYVIHASLPKSVEGYYQESGRAGRDGETSHCLLFY  945

Query  620  ATEKEKVWYHVCSSRGKGCYNTR  642
            +         +      G  +T+
Sbjct  946  SYHDVTRIRRLIQMEKDGNSHTK  968


>sp|P54132|BLM_HUMAN RecQ-like DNA helicase BLM OS=Homo sapiens 
OX=9606 GN=BLM PE=1 SV=1
Length=1417

 Score = 114 bits (285),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 66/458 (14%), Positives = 140/458 (31%), Gaps = 69/458 (15%)

Query  196   LDIDKGHVKFSKNGKDLGLAFEIPPHMKNQAL-FPACVLKNAELKFNFGEEEFKFPPKDG  254
             ++  +    ++       LA     H + Q+L FP            FG   F+    + 
Sbjct  617   INFSESIQNYTDKSA-QNLASRNLKHERFQSLSFPHTKEMMKIFHKKFGLHNFRTNQLEA  675

Query  255   FVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKY--  312
               A     D +I+     G +   Q     +    +++ P R L    ++ +++      
Sbjct  676   INAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLRSL---IVDQVQKLTSLDI  732

Query  313   ------IDNPKLRELLIIGGVAARD-QLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVR  365
                    D        I   ++ +D  + +L    + +  +  RL   +         + 
Sbjct  733   PATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICAS-NRLISTLE-NLYERKLLA  790

Query  366   FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF  425
               V+DEA  +   G+     + + ++  +      + V+  +AT +    K +  ++   
Sbjct  791   RFVIDEAHCVSQWGH--DFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQL--K  846

Query  426   PTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW  485
                  +         + + V+P  PK                                  
Sbjct  847   ILRPQVFSMSFNRHNLKYYVLPKKPKKVAF------------------------------  876

Query  486   SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL  545
                      +      K H  D  II+C ++ +CD +     + G          + +  
Sbjct  877   ---------DCLEWIRKHHPYDSGIIYCLSRRECDTMADTLQRDG---------LAALAY  918

Query  546   HGDRKPHERKQNLERFKKGD-VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
             H       R +  +++   D  + +  T     GID   V +VI+ +LP   + Y    G
Sbjct  919   HAGLSDSARDEVQQKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESG  978

Query  605   RVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTR  642
             R GR   +   +             +      G ++TR
Sbjct  979   RAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGNHHTR  1016


>sp|P0CT33|TLH1_SCHPO ATP-dependent DNA helicase tlh1 (Fragment) 
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 
GN=tlh1 PE=3 SV=1
Length=1887

 Score = 111 bits (278),  Expect = 8e-24, Method: Composition-based stats.
 Identities = 53/282 (19%), Positives = 86/282 (30%), Gaps = 51/282 (18%)

Query  361   LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
             L ++  +V+DEA  LL+ G         +++  + +        + SAT          +
Sbjct  1313  LGRLARVVIDEAHLLLTSGAWRTALSRASRLSGLYAPLH-----LLSATFPRQLEMVARQ  1367

Query  421   KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480
                       L+   +  + + + + P +     L  R                      
Sbjct  1368  TFCTNFYV--LRETSTARENIFYFLHPYDNTEFLLDLR----------------------  1403

Query  481   SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540
                               R        +AIIFCRTK D + + +   Q            
Sbjct  1404  --------------TLMKRTKVFEGDGRAIIFCRTKKDVEYIHRRLHQSDLFAHTH----  1445

Query  541   SCVCLHGDRKPHERKQNLERFKK--GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQN  598
                   GD    ER+ N + F+   G  R +I T     GI+  GV  V++  LP    +
Sbjct  1446  -VTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMD  1504

Query  599   YVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYN  640
             YV   GR GR  +  +A           W        K   N
Sbjct  1505  YVQETGRAGRDGKYAIAALFYEKYDS-TWSSYVEDSMKNFLN  1545


>sp|Q1RKN3|TLH2_SCHPO ATP-dependent DNA helicase tlh2 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=tlh2 
PE=2 SV=1
Length=1919

 Score = 111 bits (278),  Expect = 8e-24, Method: Composition-based stats.
 Identities = 53/282 (19%), Positives = 86/282 (30%), Gaps = 51/282 (18%)

Query  361   LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE  420
             L ++  +V+DEA  LL+ G         +++  + +        + SAT          +
Sbjct  1313  LGRLARVVIDEAHLLLTSGAWRTALSRASRLSGLYAPLH-----LLSATFPRQLEMVARQ  1367

Query  421   KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480
                       L+   +  + + + + P +     L  R                      
Sbjct  1368  TFCTNFYV--LRETSTARENIFYFLHPYDNTEFLLDLR----------------------  1403

Query  481   SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540
                               R        +AIIFCRTK D + + +   Q            
Sbjct  1404  --------------TLMKRTKVFEGDGRAIIFCRTKKDVEYIHRRLHQSDLFAHTH----  1445

Query  541   SCVCLHGDRKPHERKQNLERFKK--GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQN  598
                   GD    ER+ N + F+   G  R +I T     GI+  GV  V++  LP    +
Sbjct  1446  -VTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMD  1504

Query  599   YVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYN  640
             YV   GR GR  +  +A           W        K   N
Sbjct  1505  YVQETGRAGRDGKYAIAALFYEKYDS-TWSSYVEDSMKNFLN  1545


>sp|Q9C8J7|TRO_ARATH Protein TRAUCO OS=Arabidopsis thaliana OX=3702 
GN=TRO PE=1 SV=1
Length=509

 Score = 109 bits (272),  Expect = 9e-24, Method: Composition-based stats.
 Identities = 54/212 (25%), Positives = 81/212 (38%), Gaps = 54/212 (25%)

Query  90   KWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSC---HDQGLCR  146
            +  ++   +     I  D L   S   K +   RAT+G+++G  Y+E+      + G  R
Sbjct  272  EICLSKVYKAEKVEISEDRLTAGSS--KGYRMVRATRGVVEGAWYFEIKVLSLGETGHTR  329

Query  147  VGWSTMQASLD--LGTDKFGFGFGG-TGKKSHNKQFDNYGEE-FTMHDTIGCYLDIDKG-  201
            +GWST +  L   +G D   FGF    G K H    + Y EE +   D IG Y+++  G 
Sbjct  330  LGWSTDKGDLQAPVGYDGNSFGFRDIDGCKIHKALRETYAEEGYKEGDVIGFYINLPDGE  389

Query  202  ----------------------------------HVKFSKNGKDLGLAFEIPPHMKNQAL  227
                                               + F KNG   G AF     +     
Sbjct  390  SFAPKPPHYVFYKGQRYICAPDAKEEPPKVVPGSEISFFKNGVCQGAAFT---DIVGGRY  446

Query  228  FPACVL------KNAELKFNFGEEEFKFPPKD  253
            +PA  +       N  +KFNFG   F+F P+D
Sbjct  447  YPAASMYTLPDQSNCLVKFNFG-PSFEFFPED  477


>sp|Q9I920|BLM_CHICK RecQ-like DNA helicase BLM OS=Gallus gallus 
OX=9031 GN=BLM PE=1 SV=2
Length=1183

 Score = 110 bits (276),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 69/418 (17%), Positives = 132/418 (32%), Gaps = 81/418 (19%)

Query  242  FGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQ  301
            FG   F+    +   A     D +I+     G +   Q     +A   +++ P R L   
Sbjct  434  FGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAGVTVVISPLRSLIID  493

Query  302  TLNNIKQFKKYIDNPKLRELLIIGGVAARD------QLSVLENGVDIVVGTP------GR  349
             +  +K          +    + G +   D      QLS  +  + ++  TP       R
Sbjct  494  QVQKLKTL-------DIASTYLTGDITDADASKTYMQLSKKDPIIKLLYVTPEKVCASNR  546

Query  350  LDDLVSTGKLNLSQVRFL---VLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            L   +     NL   + L   V+DEA  +   G+     + + ++  +      + ++  
Sbjct  547  LLSALE----NLYNRKLLARFVIDEAHCVSQWGH--DFRKDYKRLNMLRKKFHSVPMMAL  600

Query  407  SATLHSFDVKKLSEKI-MHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
            +AT +    K +  ++ M  P    +         + + V+P  PK   +          
Sbjct  601  TATANPRVQKDIQNQLEMLKP---QVFTMSFNRHNLKYDVLPKKPKKVAM----------  647

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                                         +      K H  D  II+C ++ +CD     
Sbjct  648  -----------------------------DCLEWIKKYHPHDSGIIYCLSRHECDTTAAI  678

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD-VRFLICTDVAARGIDIHGV  584
              ++G          + +  H       R    +++   +  + +  T     GID   V
Sbjct  679  LQKEG---------LAALAYHAGLTDSNRDLVQKKWVNQEGCQVICATIAFGMGIDKPDV  729

Query  585  PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTR  642
             YVI+ +LP   + Y    GR GR   M   +   +         +      G  +TR
Sbjct  730  RYVIHASLPKSIEGYYQESGRAGRDGEMSHCLLFYSYSDVTRLRRLILMEKDGNSHTR  787


>sp|A8WK63|RECQ1_CAEBR Putative ATP-dependent DNA helicase Q1 
OS=Caenorhabditis briggsae OX=6238 GN=CBG24191 PE=3 SV=1
Length=618

 Score = 108 bits (269),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 80/476 (17%), Positives = 156/476 (33%), Gaps = 73/476 (15%)

Query  228  FPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP  287
            FP     N  LK  F  E+F+        A+    D  ++ S   G +   Q   L    
Sbjct  68   FPWSDEANQILKNKFRLEKFRPLQSAAINAVMSKEDAIVILSTGGGKSLCYQLPALLAKG  127

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGV-------  340
              L++ P   L     + I Q +K      +    +      +D+   +E  +       
Sbjct  128  LTLVISP---LVSLVEDQIMQLQKL----GIDAASLNANTP-KDEAKRVEQAITKGSTEL  179

Query  341  DIVVGTPGRLDD---LVS--TGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
             ++  TP +L     +++     L +  ++ + +DE       G+       ++ +  + 
Sbjct  180  RLLYVTPEKLAKSKRMMNQLEKSLGVGYLKLIAIDEVHCCSQWGH--DFRTDYSFLNVLK  237

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL  455
               K + ++  +AT  S +V    +K++  P  + +         +++ V+      D  
Sbjct  238  RQFKGVPILGLTATATS-NVLDDVKKMLGIPVAI-VFRAGFNRANLNYKVLTKPGSEDEC  295

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA-IIFCR  514
             E++                                      VR IK     +  II+C 
Sbjct  296  VEKI--------------------------------------VRTIKRKFSGKTGIIYCL  317

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
            ++ DC+ L +     G               H   +P +R    +++  G+++ ++ T  
Sbjct  318  SRNDCEKLAKSLKANG---------IRAKHYHAYMEPVDRSAAHQKWVSGEIQVIVATVA  368

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
               GID   V +VI+ +LP   +NY    GR GR       I             +    
Sbjct  369  FGMGIDKPDVRFVIHHSLPKSIENYYQESGRAGRDGLPATCILYYRMSDIFKQSSMIQQE  428

Query  635  GKGCYN-TRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVT  689
              G  N   +      T+    ++L    EE    +  Q + D+        G  T
Sbjct  429  QTGIANLYNMVRYASDTVTCRRVKLAEHFEEAWEPSWCQKQCDVCEKSSNSPGTAT  484


 Score = 37.8 bits (86),  Expect = 0.38, Method: Composition-based stats.
 Identities = 18/114 (16%), Positives = 38/114 (33%), Gaps = 18/114 (16%)

Query  18   EEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKG  77
             +        +Q+ +I  ++   D ++   TG GK+  + +P +              KG
Sbjct  80   NKFRLEKFRPLQSAAINAVMSKEDAIVILSTGGGKSLCYQLPALL------------AKG  127

Query  78   KTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATKGLMKG  131
             T +    S L     +   +     I +  L   + +       R  + + KG
Sbjct  128  LTLV---ISPLVSLVEDQIMQLQKLGIDAASLNANTPK---DEAKRVEQAITKG  175


>sp|Q8IBN8|DDX31_PLAF7 ATP-dependent DNA helicase DDX31 OS=Plasmodium 
falciparum (isolate 3D7) OX=36329 GN=DDX31 PE=1 SV=1
Length=899

 Score = 108 bits (269),  Expect = 7e-23, Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 65/136 (48%), Gaps = 4/136 (3%)

Query  265  YIVKSQHSGNAQVTQTKFLPN-APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLI  323
            Y + S         + K   +     L++ P+RELA Q  N      K    P +    I
Sbjct  227  YAIPSIEKILNMKEKVKITRDMGIFVLVLSPTRELAIQINNLFCILTK--PYPYIVASCI  284

Query  324  IGGVAARDQLSVLENGVDIVVGTPGRLDDLV-STGKLNLSQVRFLVLDEADGLLSQGYSD  382
             GG   + + + L+ G+ I+  TPGRL D + +T  L L+ ++ ++LDEAD ++  G  D
Sbjct  285  TGGEKKKSEKNRLKKGISILTCTPGRLLDHLENTKSLKLTFLKMVILDEADKIIYLGTQD  344

Query  383  FINRMHNQIPQVTSDG  398
             I  +++ I ++  + 
Sbjct  345  KIKLIYDMIRKIKQEE  360


 Score = 104 bits (259),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 25/102 (25%), Positives = 46/102 (45%), Gaps = 1/102 (1%)

Query  538  HQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQ  597
            +  +   LHG+    +R  N   F K +   L+CTD+ +RGI    +  VI    P   +
Sbjct  667  NNVNIYILHGNLSKEDRLGNFMDFSKTNNSILLCTDIISRGIHFDSLSVVIQYDPPQILE  726

Query  598  NYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCY  639
             Y+H++GR  R  + G A   +   + K + ++  ++     
Sbjct  727  EYIHKVGRTARLNKQGSAYLFLLKSQ-KQFLNILKNKNIQLK  767


 Score = 72.9 bits (177),  Expect = 8e-12, Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 55/131 (42%), Gaps = 6/131 (5%)

Query  4    FSEMG--VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            F ++   +   +   +E+ +++  T IQ  SIPL     D+ + + TGSGKT  ++IP I
Sbjct  173  FCDLKYILSESLINTLEKNEFIKMTSIQKMSIPLFFKPNDIFLKSMTGSGKTLCYAIPSI  232

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQM---NPYDRGSAFAIGSDGLCCQSREVKE  118
            + +   +K++ +  +         S   +  +   N +   +         C    E K+
Sbjct  233  EKIL-NMKEKVKITRDMGIFVLVLSPTRELAIQINNLFCILTKPYPYIVASCITGGEKKK  291

Query  119  WHGCRATKGLM  129
                R  KG+ 
Sbjct  292  SEKNRLKKGIS  302


>sp|Q9FT70|RQL4B_ARATH ATP-dependent DNA helicase Q-like 4B OS=Arabidopsis 
thaliana OX=3702 GN=RECQL4B PE=2 SV=1
Length=1150

 Score = 108 bits (269),  Expect = 8e-23, Method: Composition-based stats.
 Identities = 70/417 (17%), Positives = 137/417 (33%), Gaps = 85/417 (20%)

Query  239  KFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSREL  298
            K  FG   F+   ++   A     D +++     G +   Q   L  A   L++ P   L
Sbjct  462  KLVFGNHSFRPNQREIINATMSGCDVFVLMPTGGGKSLTYQLPALLCAGITLVISP---L  518

Query  299  AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL------ENGVDIVVGTP-----  347
                 + I    +      +    +  G+   +QL +L      ++   ++  TP     
Sbjct  519  VSLIQDQIMNLLQ----TNISAASLSAGMEWAEQLEILQELSSEKSKYKLLYVTPEKVAK  574

Query  348  ----GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
                 R  +++++  L        V+DEA  +   G+       +  +  +      + +
Sbjct  575  SESLLRHLEILNSRSLLAR----FVIDEAHCVSQWGH--DFRPDYQGLGVLKQKFPNIPM  628

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            +  +AT  +                       SV + V   +  VN              
Sbjct  629  LALTATATT-----------------------SVKEDVVQALGLVN--------------  651

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKG--EYAVRAIKEHKMDQA-IIFCRTKIDCD  520
                        R   N P +W   +       E   + I+E+  D+  II+C +++DC+
Sbjct  652  --------CVVFRQSFNRPNLWYSVVPKTNKCLEDIDKFIRENHFDECGIIYCLSRMDCE  703

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
             + +     G               HG   P +R    +++ K ++  +  T     GI+
Sbjct  704  KVTEALRVFG---------HKAAFYHGSMDPGKRAFVQKQWSKDEINIICATVAFGMGIN  754

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
               V +VI+ +LP   + Y    GR GR  +    +   +        H+ S  G G
Sbjct  755  KPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYTDYIRVKHMISQGGLG  811


>sp|Q19546|WRN_CAEEL ATP-dependent helicase wrn-1 OS=Caenorhabditis 
elegans OX=6239 GN=wrn-1 PE=3 SV=2
Length=1056

 Score = 107 bits (268),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 79/474 (17%), Positives = 146/474 (31%), Gaps = 87/474 (18%)

Query  198  IDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVA  257
            +D G     +N   +  A        +    P   L    L   FG + F+    D    
Sbjct  183  LDDGEFFTDRNVPQIDEA--TKMKWASMTSPPQEALN--ALNEFFGHKGFREKQWDVVRN  238

Query  258  LSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQF-KKYIDNP  316
            +    D +++ S   G +   Q   L      ++V P   L     + +     K ID  
Sbjct  239  VLGGKDQFVLMSTGYGKSVCYQLPSLLLNSMTVVVSP---LISLMNDQVTTLVSKGIDAV  295

Query  317  KLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDL-----VSTGKLNL-----SQVRF  366
            KL       G + + +   + N +  +     R   +      S   L L       +  
Sbjct  296  KLD------GHSTQIEWDQVANNMHRI-----RFIYMSPEMVTSQKGLELLTSCRKHISL  344

Query  367  LVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ--VIVCSATLHSFDVKKLSEKIMH  424
            L +DEA  +   G+       +  + ++ +        +I  +AT               
Sbjct  345  LAIDEAHCVSQWGH--DFRNSYRHLAEIRNRSDLCNIPMIALTAT---------------  387

Query  425  FPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEM  484
                V ++ +                       RL K  I T     K+      +S +M
Sbjct  388  --ATVRVRDDVIAN------------------LRLRKPLITTTSFDRKNLYISVHSSKDM  427

Query  485  WSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC  544
              +    +K +        H     II+C+TK   D++     + G              
Sbjct  428  AEDLGLFMKTD---EVKGRHFGGPTIIYCQTKQMVDDVNCVLRRIG---------VRSAH  475

Query  545  LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG  604
             H     ++R++    F +  +  ++ T     GID   V  VI+   P+  ++Y   IG
Sbjct  476  YHAGLTKNQREKAHTDFMRDKITTIVATVAFGMGIDKPDVRNVIHYGCPNNIESYYQEIG  535

Query  605  RVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQL  658
            R GR     +     A +         ++      N++ KE+    +     QL
Sbjct  536  RAGRDGSPSICRVFWAPKD-------LNTIKFKLRNSQQKEEVVENLTMMLRQL  582


>sp|A7EQ00|SSH4_SCLS1 Protein ssh4 OS=Sclerotinia sclerotiorum 
(strain ATCC 18683 / 1980 / Ss-1) OX=665079 GN=ssh4 PE=3 SV=1
Length=523

 Score = 105 bits (262),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 38/154 (25%), Positives = 64/154 (42%), Gaps = 11/154 (7%)

Query  133  HYYEVSCHDQG---LCRVGWSTMQASLDL--GTDKFGFGFGGTGKKSHNKQFDN--YGEE  185
            +Y+E   +D+    L  +G +T    L    G  K+   +  TG + +N+ F    YG +
Sbjct  204  YYWESKIYDKPENTLISIGVATKPYPLFRLPGWHKYSVAYTSTGHRRYNQPFSGPVYGPQ  263

Query  186  FTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKN-AELKFNFGE  244
            +   D IG       G + F++NGK L    ++   +K+Q LFPA        +  NFG+
Sbjct  264  YVQGDVIGVGYRPRTGTIFFTRNGKKLE---DVAHGLKSQNLFPAVGANGPCTVHVNFGQ  320

Query  245  EEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVT  278
              F F   +          G +      G+ Q +
Sbjct  321  SGFVFIEANVKKWGLAPMTGSLAPPPPYGSEQGS  354


>sp|P71359|RECQ_HAEIN ATP-dependent DNA helicase RecQ OS=Haemophilus 
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) 
OX=71421 GN=recQ PE=3 SV=1
Length=619

 Score = 106 bits (264),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 69/438 (16%), Positives = 140/438 (32%), Gaps = 77/438 (18%)

Query  236  AELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPS  295
            + LK  FG + F+   ++   A     D  +V +  +G +   Q   L      L++ P 
Sbjct  18   SVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPL  77

Query  296  REL----AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLD  351
              L     +Q   N  +      +  L +   +       QL +L    +       ++ 
Sbjct  78   ISLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPE-------KVM  130

Query  352  DLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLH  411
                   ++ S+V F+ +DEA  +   G+                               
Sbjct  131  TNSFFQLISYSKVCFIAIDEAHCISQWGHD------------------------------  160

Query  412  SFDVKKLSEKIMHFPTWVDLKG-EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVH  470
                          P +  L G + S PD     ++ +    D   ++    H+   ++H
Sbjct  161  ------------FRPEYTQLGGLKASFPDA---PIMALTATADYATQQDILRHLNLKNLH  205

Query  471  AKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQG  530
                +    N      E  K +  E   R +   K    II+C ++   + + +    +G
Sbjct  206  KYIGSFDRPNIRYTLEEKYKPM--EQLTRFVLAQKGKSGIIYCNSRNKVERIAESLRNKG  263

Query  531  GGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINV  590
                      S    H   +   R++  + F++ +V+ ++ T     GI+   V +V + 
Sbjct  264  ---------VSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFGMGINKSNVRFVAHF  314

Query  591  TLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCT  650
             LP   ++Y    GR GR +    A+             +   +          E     
Sbjct  315  DLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLEK---------PETPQRQ  365

Query  651  IWYNEMQLLSEIEEHLNC  668
            I  ++++ + E  E   C
Sbjct  366  IEQHKLEAIGEFAESQTC  383


 Score = 43.6 bits (101),  Expect = 0.006, Method: Composition-based stats.
 Identities = 55/368 (15%), Positives = 110/368 (30%), Gaps = 79/368 (21%)

Query  10   MPEIAQAVEEM-DWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETL  68
             P     ++ +  +      Q E I   L G D L+   TG+GK+  + IP +       
Sbjct  13   KPTALSVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCF-----  67

Query  69   KDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGL-CCQSREVKEWHGCRATKG  127
                        +    S L     +  D+  A  I +D L   Q+ E ++    +   G
Sbjct  68   ----------DGLTLVISPLISLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISG  117

Query  128  LMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFT  187
             +K  +            ++                                 +Y +   
Sbjct  118  QLKLLYVSPEKVMTNSFFQL--------------------------------ISYSKV--  143

Query  188  MHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEF  247
                  C++ ID+ H   S+ G D    +     +K        +   A   +   ++  
Sbjct  144  ------CFIAIDEAHCI-SQWGHDFRPEYTQLGGLKASFPDAPIMALTATADYATQQDIL  196

Query  248  KFPPKDGFV----ALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTL  303
            +            +  +    Y ++ ++    Q+T+          +I   SR       
Sbjct  197  RHLNLKNLHKYIGSFDRPNIRYTLEEKYKPMEQLTRFVLAQKGKSGIIYCNSR-------  249

Query  304  NNIKQFKKYIDNPKLRELLIIGGV----AARDQLSVLENGVDIVVGTPGRLDDLVSTGKL  359
            N +++  + + N  +       G+      R Q     + V +VV T      +     +
Sbjct  250  NKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVAT------IAFGMGI  303

Query  360  NLSQVRFL  367
            N S VRF+
Sbjct  304  NKSNVRFV  311


>sp|Q9CL21|RECQ_PASMU ATP-dependent DNA helicase RecQ OS=Pasteurella 
multocida (strain Pm70) OX=272843 GN=recQ PE=3 SV=1
Length=632

 Score = 105 bits (263),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 65/406 (16%), Positives = 126/406 (31%), Gaps = 66/406 (16%)

Query  236  AELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPS  295
              L   FG + F+   ++   A     D  ++ +  +G +   Q   L      L++ P 
Sbjct  28   DVLHAVFGYQSFRKGQEEVIDATLMGKDSLVIMATGNGKSLCYQIPALCFEGLTLVISPL  87

Query  296  REL----AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLD  351
              L     +Q L N  +      +    E   +        L +L    + V+ T     
Sbjct  88   ISLMKDQVDQLLANGIEADYLNSSQTFTEQQQVQNKLMSGTLKLLYVSPEKVMTT--SFF  145

Query  352  DLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLH  411
             L+S       +V F+ +DEA  +   G+                               
Sbjct  146  HLISH-----CKVSFVAIDEAHCISQWGHD------------------------------  170

Query  412  SFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHA  471
                          P +  L G  S     H  ++ +    D    +    H+     H 
Sbjct  171  ------------FRPEYTQLGGLKSCFP--HAPIMALTATADHATRQDILRHLNLQSPHV  216

Query  472  KDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGG  531
               +    N      E  K +  E   R +   K    II+C ++   + + +    +G 
Sbjct  217  YIGSFDRPNIRYTLVEKFKPM--EQLCRFVLGQKGKSGIIYCNSRSKVERIAESLRNKG-  273

Query  532  GPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT  591
                     S    H   +  +R+Q    F++ +V+ ++ T     GI+   V +V++  
Sbjct  274  --------VSAQAYHAGLETSQREQVQRAFQRDNVQVVVATIAFGMGINKSNVRFVVHFD  325

Query  592  LPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
            LP   ++Y    GR GR +    A+           + +   + + 
Sbjct  326  LPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLHKILLEKPES  371


 Score = 40.9 bits (94),  Expect = 0.047, Method: Composition-based stats.
 Identities = 15/61 (25%), Positives = 25/61 (41%), Gaps = 1/61 (2%)

Query  4   FSEMGVMPEIAQAVEEM-DWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
           F E+ +       +  +  +      Q E I   L G D L+   TG+GK+  + IP + 
Sbjct  17  FHEIPLKQTALDVLHAVFGYQSFRKGQEEVIDATLMGKDSLVIMATGNGKSLCYQIPALC  76

Query  63  I  63
            
Sbjct  77  F  77


>sp|A6S3E0|SSH4_BOTFB Protein ssh4 OS=Botryotinia fuckeliana (strain 
B05.10) OX=332648 GN=ssh4 PE=3 SV=1
Length=537

 Score = 105 bits (261),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 38/154 (25%), Positives = 64/154 (42%), Gaps = 11/154 (7%)

Query  133  HYYEVSCHDQG---LCRVGWSTMQASLDL--GTDKFGFGFGGTGKKSHNKQFDN--YGEE  185
            +Y+E   +D+    L  +G +T    L    G  K+   +  TG + +N+ F    YG +
Sbjct  218  YYWESKIYDKPENTLISIGVATKPYPLFRLPGWHKYSVAYTSTGHRRYNQPFSGPVYGPQ  277

Query  186  FTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKN-AELKFNFGE  244
            +   D IG       G + F++NGK L    ++   +K+Q LFPA        +  NFG+
Sbjct  278  YVQGDVIGVGYRPRTGTIFFTRNGKKLE---DVAHGLKSQNLFPAVGANGPCTVHVNFGQ  334

Query  245  EEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVT  278
              F F   +          G +      G+ Q +
Sbjct  335  SGFVFIEANVKKWGLAPMTGSLAPPPPYGSEQGS  368


>sp|P15043|RECQ_ECOLI ATP-dependent DNA helicase RecQ OS=Escherichia 
coli (strain K12) OX=83333 GN=recQ PE=1 SV=5
Length=609

 Score = 104 bits (260),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 67/411 (16%), Positives = 131/411 (32%), Gaps = 80/411 (19%)

Query  238  LKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRE  297
            L+  FG ++F+   ++    +    D  +V     G +   Q   L      ++V P   
Sbjct  17   LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSP---  73

Query  298  LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGV---DIVVGTPGRLDDLV  354
            L     + + Q +             +     R+Q   +  G     I      RL  + 
Sbjct  74   LISLMKDQVDQLQA-----NGVAAACLNSTQTREQQLEVMTGCRTGQI------RLLYIA  122

Query  355  STGKLNLSQVRFL-----VL---DEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
                +  + +  L     VL   DEA  +   G+        +  P+  + G+  Q    
Sbjct  123  PERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGH--------DFRPEYAALGQLRQ----  170

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
                              FPT   +    +  DT    +V +    D L +         
Sbjct  171  -----------------RFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQ---------  204

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                   ++    N   M  E  K L  +  +R ++E +    II+C ++   ++     
Sbjct  205  ------ISSFDRPNIRYMLMEKFKPL--DQLMRYVQEQRGKSGIIYCNSRAKVEDTAARL  256

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
              +G          S    H   + + R    E+F++ D++ ++ T     GI+   V +
Sbjct  257  QSKG---------ISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRF  307

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
            V++  +P   ++Y    GR GR      A+                 + +G
Sbjct  308  VVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQG  358


 Score = 46.7 bits (109),  Expect = 8e-04, Method: Composition-based stats.
 Identities = 51/371 (14%), Positives = 97/371 (26%), Gaps = 77/371 (21%)

Query  7    MGVMPEIAQAVEE-MDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVY  65
            + +     Q ++E   +      Q E I  +L G D L+   TG GK+  + IP +    
Sbjct  7    LNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL---  63

Query  66   ETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRAT  125
                           +     V++       D+            C +            
Sbjct  64   ---------------LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVM  108

Query  126  KGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEE  185
             G                 CR G   +                       N  F  +   
Sbjct  109  TG-----------------CRTGQIRLLY------------IAPERLMLDN--FLEHLAH  137

Query  186  FTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQ-ALFPACVLK---NAELKFN  241
            +         L +D+ H   S+ G D    +     ++ +    P   L    +   + +
Sbjct  138  WNP-----VLLAVDEAHCI-SQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQD  191

Query  242  FGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQ  301
                     P     +  +    Y++  +     Q+ +          +I   SR     
Sbjct  192  IVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSR-----  246

Query  302  TLNNIKQFKKYIDNPKLRELLIIGG----VAARDQLSVLENGVDIVVGTPGRLDDLVSTG  357
                ++     + +  +       G    V A  Q     + + IVV T      +    
Sbjct  247  --AKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVAT------VAFGM  298

Query  358  KLNLSQVRFLV  368
             +N   VRF+V
Sbjct  299  GINKPNVRFVV  309


>sp|Q9VGI8|BLM_DROME RecQ-like DNA helicase Blm OS=Drosophila 
melanogaster OX=7227 GN=Blm PE=1 SV=1
Length=1487

 Score = 104 bits (260),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 64/418 (15%), Positives = 126/418 (30%), Gaps = 74/418 (18%)

Query  238   LKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRE  297
             L ++FG + F+        A     D +++     G +   Q   +      +++ P + 
Sbjct  729   LSYSFGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVISPLKS  788

Query  298   LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARD------QLSVLENGVDIVVGTP----  347
             L     + I +         +    + G     D       L      V ++  TP    
Sbjct  789   L---IFDQINKLASL----DICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKIS  841

Query  348   --GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
                R  D + T   N + +   V+DEA  +   G+       + ++  +      +  I 
Sbjct  842   SSARFQDTLDTLNSN-NYISRFVIDEAHCVSQWGH--DFRPDYKKLGVLKKRFPNVPTIA  898

Query  406   CSAT-LHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
              +AT      +  L++  +    W                                +S++
Sbjct  899   LTATATPRVRLDILAQLNLKNCKW--------------------------FLSSFNRSNL  932

Query  465   RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
             R   +  K  +     S  + S+                      II+C ++ +CD   +
Sbjct  933   RYRVLPKKGVSTLDDISRYIRSKPQHF----------------SGIIYCLSRKECDETSK  976

Query  525   YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
                + G            V  H      +R+   + +  G +R +  T     GID   V
Sbjct  977   KMCKDG---------VRAVSYHAGLTDTDRESRQKDWLTGKMRVICATVAFGMGIDKPDV  1027

Query  585   PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTR  642
              +V++ +LP   + Y    GR GR   +   I             +  S     YN +
Sbjct  1028  RFVLHYSLPKSIEGYYQEAGRAGRDGDVADCILYYNYSDMLRIKKMLDSDKALQYNVK  1085


>sp|O18017|BLM_CAEEL RecQ-like DNA helicase blm-1 OS=Caenorhabditis 
elegans OX=6239 GN=him-6 PE=1 SV=2
Length=988

 Score = 104 bits (259),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 64/414 (15%), Positives = 123/414 (30%), Gaps = 77/414 (19%)

Query  235  NAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEP  294
               LK  FG  +F+   K   ++     D +++    +G +   Q   +      ++V P
Sbjct  236  YDTLKSKFGFNQFRHRQKQCILSTLMGHDTFVLMPTGAGKSLCYQLPAVILPGVTVVVSP  295

Query  295  SRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDI--VVGTP-  347
             R L E     +K+         +    +   + A  Q  +          I  +  TP 
Sbjct  296  LRSLIEDQKMKMKELG-------IGCEALTADLGAPAQEKIYAELGSGNPSIKLLYVTPE  348

Query  348  -----GRLDDLVSTGKLNLSQVRFL---VLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
                 GRL    ++   +L +   L   V+DEA  +   G+        +  P  T    
Sbjct  349  KISASGRL----NSVFFDLHRRGLLARFVIDEAHCVSQWGH--------DFRPDYT----  392

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
                           +  L EK  + P  +      + P  V      +  +  +L+   
Sbjct  393  --------------KLSSLREKYANPPVPIIALTATATPKIVTDARDHLKMQNSKLF---  435

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
                  +  V           +       ++ +K  Y             I++C ++ +C
Sbjct  436  -----ISSFVRDNLKYDLIPKAARSLINVVEKMKQLY--------PGKSGIVYCLSRKEC  482

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            + ++    + G          S    H     + R      +       +  T     GI
Sbjct  483  ETVQMMLTKAG---------LSAEVYHAGLNDNLRVSVQRSWIANKFDVICATIAFGMGI  533

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
            D   V +VI+ +LP   + Y    GR GR       + L +         +   
Sbjct  534  DKPDVRFVIHYSLPKSIEGYYQETGRAGRDGMPSYCLMLYSYHDSIRLRRMIEE  587


 Score = 38.2 bits (87),  Expect = 0.31, Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 16/106 (15%)

Query  8    GVMPEIAQAVE-EMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYE  66
             +  E+   ++ +  +      Q + I   L G D  +   TG+GK+  + +P + +   
Sbjct  230  DMNKELYDTLKSKFGFNQFRHRQKQCILSTLMGHDTFVLMPTGAGKSLCYQLPAVIL---  286

Query  67   TLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQ  112
                          +    S L     +   +     IG + L   
Sbjct  287  ------------PGVTVVVSPLRSLIEDQKMKMKELGIGCEALTAD  320


>sp|Q8L840|RQL4A_ARATH ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis 
thaliana OX=3702 GN=RECQL4A PE=2 SV=1
Length=1188

 Score = 104 bits (259),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 68/389 (17%), Positives = 129/389 (33%), Gaps = 77/389 (20%)

Query  242  FGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQ  301
            FG   F+   ++   A     D +++     G +   Q   L      L++ P   L   
Sbjct  449  FGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICGGITLVISP---LVSL  505

Query  302  TLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN------GVDIVVGTPGRLD--DL  353
              + I    +      +    +  G+   +QL + +          ++  TP ++   D 
Sbjct  506  IQDQIMNLLQ----ANIPAASLSAGMEWAEQLKIFQELNSEHSKYKLLYVTPEKVAKSDS  561

Query  354  VSTGKLNLSQVRFL---VLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATL  410
            +     NL+    L   V+DEA  +   G+       +  +  +      + V+  +AT 
Sbjct  562  LLRHLENLNSRGLLARFVIDEAHCVSQWGH--DFRPDYQSLGILKQKFPNIPVLALTAT-  618

Query  411  HSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVH  470
                                     SV + V   +  VN                     
Sbjct  619  ----------------------ATASVKEDVVQALGLVN---------------------  635

Query  471  AKDNTRPGANSPEMWSEAIKILKG--EYAVRAIKEHKMDQA-IIFCRTKIDCDNLEQYFI  527
                 R   N P +W   +   K   E   + IKE+  D+  II+C +++DC+ + +   
Sbjct  636  -CVVFRQSFNRPNLWYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVSERLQ  694

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
            + G               HG  +P +R     ++ K ++  +  T     GI+   V +V
Sbjct  695  EFG---------HKAAFYHGSMEPEQRAFIQTQWSKDEINIICATVAFGMGINKPDVRFV  745

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAI  616
            I+ +LP   + Y    GR GR  +    +
Sbjct  746  IHHSLPKSIEGYHQECGRAGRDGQRSSCV  774


 Score = 35.5 bits (80),  Expect = 2.4, Method: Composition-based stats.
 Identities = 11/37 (30%), Positives = 17/37 (46%), Gaps = 0/37 (0%)

Query  27   DIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
              Q E I   + G DV +   TG GK+  + +P +  
Sbjct  456  PNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALIC  492


>sp|Q09811|HUS2_SCHPO ATP-dependent DNA helicase hus2/rqh1 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 
GN=rqh1 PE=1 SV=1
Length=1328

 Score = 104 bits (259),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 86/269 (32%), Gaps = 28/269 (10%)

Query  418  LSEKIMHFPTWVDLKGEDSVPDTVH-------HVVVPVNPKTDRLWERLGKSHIRTDDVH  470
            L+  ++     V   G D  PD          +  +P    T    E + K  I T  + 
Sbjct  645  LARIVIDEAHCVSHWGHDFRPDYKQLGLLRDRYQGIPFMALTATANEIVKKDIINTLRME  704

Query  471  AKDNTRPGANSPEMWSEAI--KILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQ  528
                 +   N P ++ E    K L  E        H  +  II+C ++  C+ +      
Sbjct  705  NCLELKSSFNRPNLFYEIKPKKDLYTELYRFISNGHLHESGIIYCLSRTSCEQVAAKLRN  764

Query  529  QGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVI  588
              G              H   +  ER++    ++ G  + ++ T     G+D   V +VI
Sbjct  765  DYG--------LKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGMGVDKGDVRFVI  816

Query  589  NVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGG  648
            + + P   + Y    GR GR  +    I   + +    +  +  S            DG 
Sbjct  817  HHSFPKSLEGYYQETGRAGRDGKPAHCIMFYSYKDHVTFQKLIMSG-----------DGD  865

Query  649  CTIWYNEMQLLSEIEEHLNCTISQVEPDI  677
                  + Q+L ++ +            +
Sbjct  866  AETKERQRQMLRQVIQFCENKTDCRRKQV  894


>sp|Q0WVW7|RQL5_ARATH ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis 
thaliana OX=3702 GN=RECQL5 PE=2 SV=2
Length=911

 Score = 103 bits (257),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 71/458 (16%), Positives = 148/458 (32%), Gaps = 76/458 (17%)

Query  235  NAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEP  294
               L   +G + F+         +       +V    +G +   Q   +      L+V P
Sbjct  258  TKLLNLVYGYDSFRDGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMILPGITLVVSP  317

Query  295  SRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARD---QLSVLENGV-DIVVGTPGRL  350
               L    ++ +K          ++  L+       +    L  L+ G+  ++  +P RL
Sbjct  318  ---LVSLMIDQLKHL-----PSIIKGGLLSSSQRPEEATETLRKLKEGIIKVLFVSPERL  369

Query  351  D--DLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSA  408
               + +S  +++LS V  +V+DEA  +    ++              S  +    ++ S 
Sbjct  370  LNVEFLSMFRMSLS-VSLVVVDEAHCVSEWSHNF-----------RPSYMRLKASMLFS-  416

Query  409  TLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDD  468
                                 +LK E  +        +     T  L   +    I + +
Sbjct  417  ---------------------ELKAECILA-------MTATATTMTLQAVMSSLEIPSTN  448

Query  469  VHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQ  528
            +  K   R         S A ++      + +    ++   I++C+ + + D + +Y   
Sbjct  449  LIQKSQLRDNFELSVSLSGANRMKDLLILMESPPYKEIRSIIVYCKFQYETDMISKYL--  506

Query  529  QGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVI  588
                   + +  +    H      +R +  E F    +R ++ T     G+D   V  VI
Sbjct  507  -------RDNNINAKGYHSGLPAKDRVRIQESFCSNKIRVVVATVAFGMGLDKGDVGAVI  559

Query  589  NVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCY---------  639
            + ++P   + YV  IGR GR  R+         +       +  S G   Y         
Sbjct  560  HFSVPGSMEEYVQEIGRAGRDGRLSYCHLFYDNDTYLKLRSLAHSDGVDEYAVGKFLTHV  619

Query  640  ---NTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVE  674
                T+  E     +  +  Q     EE +   ++ +E
Sbjct  620  FSTETKQHEKICSLVIESASQKFDMKEEVMQTILTHLE  657


>sp|A1CNW8|SSH4_ASPCL Protein ssh4 OS=Aspergillus clavatus (strain 
ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / 
QM 1276 / 107) OX=344612 GN=ssh4 PE=3 SV=1
Length=511

 Score = 101 bits (252),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 46/193 (24%), Positives = 69/193 (36%), Gaps = 24/193 (12%)

Query  129  MKGKHYYEVSCHDQG---LCRVGWSTMQASLDL--GTDKFGFGFGGTGKKSHNKQF--DN  181
                +Y+E   +D+    L  VG +T    L    G  K+   +  TG + HN+ F    
Sbjct  219  QNDVYYWEAKIYDKPENTLVSVGMTTKPYPLFRLPGFHKYSVAYSSTGHRRHNQPFASTP  278

Query  182  YGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKN-AELKF  240
            YG   +  D IG       G + F++NGK L    ++    K Q  FP         +  
Sbjct  279  YGPPLSQGDVIGVGYRPRSGTIFFTRNGKKLE---DVVHAAKTQNFFPTVGANGPCTVHV  335

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPS-RELA  299
            NFG+  F F   +          G +      G+ Q +            I+  S RE A
Sbjct  336  NFGQMGFVFIEANVKKWGLAPMTGSLAPPPPYGSEQGS------------ILLESGRESA  383

Query  300  EQTLNNIKQFKKY  312
             Q    + Q   Y
Sbjct  384  AQISQRVYQEAGY  396


>sp|P40724|RECQ_SALTY ATP-dependent DNA helicase RecQ OS=Salmonella 
typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 
GN=recQ PE=3 SV=3
Length=609

 Score = 102 bits (253),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 64/410 (16%), Positives = 125/410 (30%), Gaps = 78/410 (19%)

Query  238  LKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRE  297
            L+  FG ++F+   +          D  +V     G +   Q   L      ++V P   
Sbjct  17   LQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSP---  73

Query  298  LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE--NGVDIVVGTPGRLDDLVS  355
            L     + + Q         +    +    +   QL V+       I      RL  +  
Sbjct  74   LISLMKDQVDQLLA----NGVAAACLNSTQSREQQLEVMAGCRTGQI------RLLYIAP  123

Query  356  TGKL---NLSQVRF-----LVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
               +    L  +       L +DEA  +   G+        +  P+  + G+  Q     
Sbjct  124  ERLMLDNFLDHLAHWNPVLLAVDEAHCISQWGH--------DFRPEYAALGQLRQ-----  170

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
                             FP    +    +  DT    ++ +    D L +          
Sbjct  171  ----------------RFPALPFMALTATADDTTRQDIIRLLGLNDPLIQ----------  204

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
                  ++    N   M  E  K L  +  +R ++E +    II+C ++   ++      
Sbjct  205  -----ISSFDRPNIRYMLMEKFKPL--DQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQ  257

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
             +G          S    H   +   R    E+F++ D++ ++ T     GI+   V +V
Sbjct  258  SRG---------ISAAAYHAGLENAIRVDVQEKFQRDDLQIVVATVAFGMGINKPNVRFV  308

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
            ++  +P   ++Y    GR GR      A+                 +  G
Sbjct  309  VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPAG  358


 Score = 44.0 bits (102),  Expect = 0.005, Method: Composition-based stats.
 Identities = 48/371 (13%), Positives = 95/371 (26%), Gaps = 77/371 (21%)

Query  7    MGVMPEIAQAVEE-MDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVY  65
            + +     Q ++E   +      Q   I   L G D L+   TG GK+  + IP +    
Sbjct  7    LNLESGAKQVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALL---  63

Query  66   ETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRAT  125
                           +     V++       D+            C +            
Sbjct  64   ---------------LDGLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQLEVM  108

Query  126  KGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEE  185
             G                 CR G   +                       N  F ++   
Sbjct  109  AG-----------------CRTGQIRLLY------------IAPERLMLDN--FLDHLAH  137

Query  186  FTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQ-ALFPACVLK---NAELKFN  241
            +         L +D+ H   S+ G D    +     ++ +    P   L    +   + +
Sbjct  138  WNP-----VLLAVDEAHCI-SQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTTRQD  191

Query  242  FGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQ  301
                     P     +  +    Y++  +     Q+ +          +I   SR     
Sbjct  192  IIRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSR-----  246

Query  302  TLNNIKQFKKYIDNPKLRELLIIGGV----AARDQLSVLENGVDIVVGTPGRLDDLVSTG  357
                ++     + +  +       G+        Q     + + IVV T      +    
Sbjct  247  --AKVEDTAARLQSRGISAAAYHAGLENAIRVDVQEKFQRDDLQIVVAT------VAFGM  298

Query  358  KLNLSQVRFLV  368
             +N   VRF+V
Sbjct  299  GINKPNVRFVV  309


>sp|Q9TXJ8|RECQ1_CAEEL Putative ATP-dependent DNA helicase Q1 
OS=Caenorhabditis elegans OX=6239 GN=K02F3.12 PE=3 SV=3
Length=631

 Score = 102 bits (253),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 65/400 (16%), Positives = 132/400 (33%), Gaps = 68/400 (17%)

Query  228  FPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP  287
            FP        LK  F  E+F+   +    A+    D  ++ S   G +   Q   L    
Sbjct  91   FPWSDEATKILKEQFHLEKFRPLQRAAINAVMSKEDAVVILSTGGGKSLCYQLPALLANG  150

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVD------  341
             AL+V P   L     + I Q +       +    +    +  +   V +   +      
Sbjct  151  LALVVSP---LISLVEDQILQLRSL----GIDSSSLNANTSKEEAKRVEDAITNKDSKFR  203

Query  342  IVVGTPGRL---DDLVST--GKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTS  396
            ++  TP +L     +++     L++  ++ + +DE       G+       ++ +  +  
Sbjct  204  LLYVTPEKLAKSKKMMNKLEKSLSVGFLKLIAIDEVHCCSQWGH--DFRTDYSFLNVLKR  261

Query  397  DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLW  456
              K + ++  +AT  S  +  + + +          G +     + + VV      D   
Sbjct  262  QFKGVPILGLTATATSNVLDDVKDMLGIQAALTFRAGFNR--SNLKYKVVQKPGSEDECT  319

Query  457  ERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTK  516
            E + K+                                       ++      II+C ++
Sbjct  320  EEIAKT-------------------------------------IKRDFAGQTGIIYCLSR  342

Query  517  IDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAA  576
             DC+ + +           K H       H   +P +R    + +  G ++ ++ T    
Sbjct  343  NDCEKVAKAL---------KSHGIKAKHYHAYMEPVDRSGAHQGWISGKIQVIVATVAFG  393

Query  577  RGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAI  616
             GID   V +VI+ +LP   +NY    GR GR  +    I
Sbjct  394  MGIDKPNVRFVIHHSLPKSIENYYQESGRAGRDGQPATCI  433


 Score = 35.9 bits (81),  Expect = 1.6, Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 0/44 (0%)

Query  18   EEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI  61
            E+        +Q  +I  ++   D ++   TG GK+  + +P +
Sbjct  103  EQFHLEKFRPLQRAAINAVMSKEDAVVILSTGGGKSLCYQLPAL  146


>sp|Q57742|HELX_METJA Uncharacterized ATP-dependent helicase MJ0294 
OS=Methanocaldococcus jannaschii (strain ATCC 43067 / 
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ0294 
PE=3 SV=1
Length=841

 Score = 102 bits (254),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 81/472 (17%), Positives = 158/472 (33%), Gaps = 80/472 (17%)

Query  244  EEEFKFPPKDGFVALSKAPDGYIVKSQHSGNA------------QVTQTKFLPNAPKALI  291
             + F  P +     + +  +  I     SG              +++    L +    L 
Sbjct  32   YKTFTPPQRYAIKEIHEGKNVLICSPTGSGKTLSAFLAGINELIKLSMENKLEDRIYILY  91

Query  292  VEPSRELAEQTLNNIKQFKKYIDNP---------KLRELLIIGGVAARDQLSVLENGVDI  342
            V P R L      N+K+  K I +          ++R  +      +  +  +L+    I
Sbjct  92   VSPLRALNNDIERNLKEPLKEIYDVAKEIGIELDEIRVAVRTSDTTSSQKQRMLKKPPHI  151

Query  343  VVGTPGRLDDLVSTGKLN--LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR  400
            ++ TP  L   +++ K +  LS ++++++DE   L ++     ++    ++ ++ +  + 
Sbjct  152  LITTPESLAIALNSPKFSQLLSGIKYVIVDEIHALTNKR-GVHLSLSLERLNRIANFIRI  210

Query  401  LQVIVCSATLHSF-DVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
                  SAT+H   +V K           VD+  +  +   V                  
Sbjct  211  G----LSATIHPLTEVAKFLVGNGRDCYIVDVSYKKEIEIKV------------------  248

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
                             P  +     SE I         + I+EHK    +IF  T+   
Sbjct  249  ---------------ISPVDDFIYTPSEEISKRLYNLLKKLIEEHKT--TLIFTNTRSAT  291

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
            + +  Y  Q G    +          H       R +  E+ KKG++R  I +     G+
Sbjct  292  ERVAFYLKQLGVEKVETH--------HSSLSREHRLEVEEKLKKGEIRVCISSTSLELGV  343

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVG-RAERMGLAISLVATEKEKVWYHVCSSRGKGC  638
            DI  +  VI +  P      + RIGR G R       I +     + V   V +   K  
Sbjct  344  DIGSIDLVILLGSPKSVSRALQRIGRSGHRLHEKSKGIIIPFDRDDLVENVVLAYDAKIG  403

Query  639  YNTRLKEDGGCTIWYNE------MQLLSEIEEHLNCTISQVEPDIKVPVDEF  684
               R+     C     +      ++ + +++E  N  I +  P   +   +F
Sbjct  404  KIDRIHIPKNCLDVLAQHLVGMALEKVWDVDEAYNL-IKKAYPYKDLSKKDF  454


 Score = 46.7 bits (109),  Expect = 9e-04, Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 30/74 (41%), Gaps = 5/74 (7%)

Query  19  EMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTG-AFSIPVIQIVYETLKDQQEGKKG  77
           +  +   T  Q  +I  I  G +VL+ + TGSGKT  AF    +  + E +K   E K  
Sbjct  29  KRKYKTFTPPQRYAIKEIHEGKNVLICSPTGSGKTLSAF----LAGINELIKLSMENKLE  84

Query  78  KTTIKTGASVLNKW  91
                   S L   
Sbjct  85  DRIYILYVSPLRAL  98


>sp|P95949|HELX_SACS2 Uncharacterized ATP-dependent helicase SSO0112 
OS=Saccharolobus solfataricus (strain ATCC 35092 / DSM 
1617 / JCM 11322 / P2) OX=273057 GN=SSO0112 PE=3 SV=1
Length=875

 Score = 102 bits (253),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 61/393 (16%), Positives = 133/393 (34%), Gaps = 58/393 (15%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGN------------AQVTQTKFLPNAPKALIVEP  294
            F  P +     + +  +  +     SG              ++     L +   A+ + P
Sbjct  31   FTPPQRAAIPLIKQNYNVLVSSPTGSGKTLAAFLGILDSLFELGDNNELEDKVYAIYISP  90

Query  295  SRELAEQTLNNI----KQFKKYIDN-PKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR  349
             R L      N+     + ++     P +R  +        ++  +L+    I++ TP  
Sbjct  91   LRALNNDMQRNLLEPLNELRQVNSKLPDVRVGIRTSDTTPYEKQKMLKKPPHILITTPES  150

Query  350  LDDLVSTGKLN--LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
                +++ K +  L+ V+++++DE   L +     +++ M      + +  + +++ + S
Sbjct  151  FGISITSPKFSQKLTDVKWIIVDEIHELANSKRGAYLSAMLELFRNLITKKEFVRIGL-S  209

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+   +                          V   +V      DR +  +    ++  
Sbjct  210  ATVSPLE-------------------------EVAQFLV----GKDREYRIVDARFVKPV  240

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
            D+      +   +S E      ++ KG Y     +  K    +IF  T+   + +     
Sbjct  241  DIKVISPVKDLVHSSES-----EVDKGIYKTILNEVKKHRTTLIFTNTRHATERVAYKLR  295

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
            +            +    H       R    E+ KKG ++ ++ +     GIDI  +  V
Sbjct  296  KLAENEKVFDVD-AIEAHHSSLSRDVRLDVEEKLKKGILKVVVSSTSLELGIDIGYIDLV  354

Query  588  INVTLPDEKQNYVHRIGRVGRAER---MGLAIS  617
            I ++ P      + RIGR G   R    G  I 
Sbjct  355  ILLSSPKSVSRLLQRIGRAGHHIRSISKGRVIV  387


 Score = 54.4 bits (129),  Expect = 3e-06, Method: Composition-based stats.
 Identities = 52/315 (17%), Positives = 99/315 (31%), Gaps = 51/315 (16%)

Query  19   EMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQ-EGKKG  77
               +   T  Q  +IPLI    +VL+++ TGSGKT A  + ++  ++E   + + E K  
Sbjct  25   RQKYTTFTPPQRAAIPLIKQNYNVLVSSPTGSGKTLAAFLGILDSLFELGDNNELEDKVY  84

Query  78   KTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEV  137
               I    ++ N  Q N  +  +     +  L                  +  G    + 
Sbjct  85   AIYISPLRALNNDMQRNLLEPLNELRQVNSKL----------------PDVRVGIRTSDT  128

Query  138  SCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLD  197
            + +++          +    L T    FG   T  K   K  D    ++ + D I     
Sbjct  129  TPYEKQKM-----LKKPPHILITTPESFGISITSPKFSQKLTD---VKWIIVDEI-----  175

Query  198  IDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLK--------------NAELKFNFG  243
                 +  SK G  L    E+  ++  +  F    L                 + ++   
Sbjct  176  ---HELANSKRGAYLSAMLELFRNLITKKEFVRIGLSATVSPLEEVAQFLVGKDREYRIV  232

Query  244  EEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTL  303
            +  F  P     ++  K            G  +    +   +    LI   +R     T 
Sbjct  233  DARFVKPVDIKVISPVKDLVHSSESEVDKGIYKTILNEVKKHRTT-LIFTNTR---HATE  288

Query  304  NNIKQFKKYIDNPKL  318
                + +K  +N K+
Sbjct  289  RVAYKLRKLAENEKV  303


>sp|Q1E2D2|SSH4_COCIM Protein SSH4 OS=Coccidioides immitis (strain 
RS) OX=246410 GN=SSH4 PE=3 SV=1
Length=494

 Score = 98.7 bits (244),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 38/154 (25%), Positives = 61/154 (40%), Gaps = 11/154 (7%)

Query  133  HYYEVSCHDQG---LCRVGWSTMQASLDL--GTDKFGFGFGGTGKKSHNKQFDN--YGEE  185
            +Y+E   +D+    L  +G +T    L    G  K    +  TG + HN+ F    YG E
Sbjct  217  YYWEAKIYDKPETSLISIGMTTKPYPLFRLPGFHKTSISYQSTGHRRHNQPFTPTLYGPE  276

Query  186  FTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKN-AELKFNFGE  244
            F   D +G       G + F++NGK L    ++   +K+Q  FP         +  NFG+
Sbjct  277  FVQGDVVGVGYRPRSGTIFFTRNGKKLE---DVAHGLKSQNFFPTVGANGPCTVHVNFGQ  333

Query  245  EEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVT  278
              F F   +          G +      G+ Q +
Sbjct  334  LGFVFIEANVKKWGLAPMTGSLAPPPPYGSEQGS  367


>sp|Q54CH6|IF4AX_DICDI Putative eukaryotic initiation factor 4A-like 
protein OS=Dictyostelium discoideum OX=44689 GN=DDB_G0292914 
PE=5 SV=1
Length=248

 Score = 94.4 bits (233),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 31/105 (30%), Positives = 55/105 (52%), Gaps = 2/105 (2%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKY-IDNPKLRELLIIGGVAARDQLSVLENG-VDIVV  344
            P+ L++ P++EL++ T            +N   + L  IGGV     + +L+ G   I++
Sbjct  100  PQILMILPTKELSQTTKVIYSSLGGGENNNNDFKVLSCIGGVKISMDIEILKKGNTQILL  159

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHN  389
            GTPGR+ DL S  + +   ++ LV DE D +LS+G+   +  +  
Sbjct  160  GTPGRISDLFSRKRFDTDNIKILVFDELDEILSRGFECQLEDIIK  204


 Score = 52.1 bits (123),  Expect = 5e-06, Method: Composition-based stats.
 Identities = 20/144 (14%), Positives = 50/144 (35%), Gaps = 2/144 (1%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            F+ +G+  ++   ++       T  Q E I  I    +V++ +  G+G+T +  I  +  
Sbjct  16   FASLGLNEQLINNIKRYGITKLTPFQMEVIKEIKENSNVIVDSIEGTGRTISLIIGTLDK  75

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR  123
            + ET + Q++ ++ +       S      + P    S                       
Sbjct  76   IDETKQQQEQEQQERQQTDQQFSFPQILMILPTKELSQTTKVIYSSLGGGENNNNDFKVL  135

Query  124  ATKGLMKGKHYYEVSCHDQGLCRV  147
            +   +   K   ++    +G  ++
Sbjct  136  S--CIGGVKISMDIEILKKGNTQI  157


>sp|Q5UPX0|YR290_MIMIV Putative ATP-dependent RNA helicase R290 
OS=Acanthamoeba polyphaga mimivirus OX=212035 GN=MIMI_R290 
PE=3 SV=1
Length=548

 Score = 98.3 bits (243),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 45/294 (15%), Positives = 96/294 (33%), Gaps = 29/294 (10%)

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG--EYAVRAIKE  503
            VP+   T      + K   +   +   +  +   + P ++ E     K      V  I +
Sbjct  179  VPILALTATATNIVAKDICKVLQLKTNEPIKASFDRPNLYLEVRTKSKNPANDIVPIINK  238

Query  504  HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK  563
            +     II+C TK +   +               H+  C   H       + +    F  
Sbjct  239  YPNQSVIIYCLTKKETQKIADILT---------VHKVVCGIYHAGLSNEHKTKTHTNFIN  289

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
              ++ ++ T     GI+   V  VI+   P   + Y   IGR GR        +    + 
Sbjct  290  NKIKIVVATIAFGMGINKPDVRVVIHYGAPKNIEGYYQEIGRAGRDGEKSYCYAFYNFQD  349

Query  624  EKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDE  683
              +                + ++        ++ LL ++++++           K+ ++ 
Sbjct  350  FMIQRRF------------ISQNNNPNYQKTQLALLEQMKKYVT----LRTCRRKILLEY  393

Query  684  FDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKEAQTSFLHLGYLPNQLF  737
            FD +    +K          H +I+   V     ++ EA+     +  +PN+ F
Sbjct  394  FDEETK--EKCDFCDNCCGVHKNIVNENVTSKQNVQSEAKLIIELIESIPNRNF  445


 Score = 36.6 bits (83),  Expect = 0.83, Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 34/116 (29%), Gaps = 18/116 (16%)

Query  20   MDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKT  79
              +      Q E I  ++ G DV     T +GK+  F IP +                  
Sbjct  25   YGYDNFRPRQYEIINKVINGEDVCAILMTSAGKSLCFQIPAL------------------  66

Query  80   TIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYY  135
             +   A +++       D+           CC +  V+     R      K K  Y
Sbjct  67   YLDKPAIIISPLISLMEDQRLILEKLGISSCCYNSNVENKAQMRKDIMQFKYKFIY  122


>sp|O94762|RECQ5_HUMAN ATP-dependent DNA helicase Q5 OS=Homo sapiens 
OX=9606 GN=RECQL5 PE=1 SV=2
Length=991

 Score = 99.0 bits (245),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 71/446 (16%), Positives = 132/446 (30%), Gaps = 72/446 (16%)

Query  236  AELKFNFGEEEFKFP-PKDGFVALSKA-PDGYIVKSQHSGNAQVTQTKFLPNAPKALIVE  293
            + LK  FG + FK P  +   +A+ K   D ++     +G +   Q   L      ++V 
Sbjct  18   STLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALLAKGITIVVS  77

Query  294  PSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVD--IVVGTP  347
            P   L     + +     ++   K+R   +   ++A+++  +L           I+  TP
Sbjct  78   P---LIALIQDQV----DHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYITP  130

Query  348  ---------GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
                       L+ LVS   L+     +LV+DEA  +   G+    + +     +     
Sbjct  131  EMAASSSFQPTLNSLVSRHLLS-----YLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGH  185

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER  458
                 +  +AT         +   +  P  +                     KT      
Sbjct  186  APCVALTATAT-PQVQEDVFAALHLKKPVAIF--------------------KTPCFRAN  224

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
            L       + +              +  EA K L G               I++CRT+  
Sbjct  225  LFYDVQFKELISDPYGNLKDFCLKALGQEADKGLSGC-------------GIVYCRTREA  271

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
            C+ L      +G          +    H   K  ER      + +  V  ++ T     G
Sbjct  272  CEQLAIELSCRG---------VNAKAYHAGLKASERTLVQNDWMEEKVPVIVATISFGMG  322

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGC  638
            +D   V +V +  +      Y    GR GR  +        +         +        
Sbjct  323  VDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKEVAKL  382

Query  639  YNTRLKEDGGCTIWYNEMQLLSEIEE  664
               R  +            L++  EE
Sbjct  383  QEKRGNKASDKATIMAFDALVTFCEE  408


 Score = 36.6 bits (83),  Expect = 0.90, Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 1/37 (3%)

Query  26  TDIQAESIPLILGG-GDVLMAAETGSGKTGAFSIPVI  61
           T +Q  +   ++ G  DV +   TG+GK+  + +P +
Sbjct  31  TPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPAL  67


>sp|P73421|RECQ_SYNY3 ATP-dependent DNA helicase RecQ OS=Synechocystis 
sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=recQ PE=3 
SV=1
Length=478

 Score = 97.1 bits (240),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 31/130 (24%), Positives = 61/130 (47%), Gaps = 9/130 (7%)

Query  493  KGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPH  552
            + +   R + +H  +  +I+ RT+    NL Q+  ++G         F     HG   PH
Sbjct  226  RRQQLRRFLLKHLQESGLIYVRTRTMAINLAQWLQERG---------FDSEAYHGGLGPH  276

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM  612
            +R+Q  +++  G +  ++CT+    GID     +V++   P    +Y+  +GR GR  + 
Sbjct  277  QRRQLEQKWLTGQISSVVCTNAFGLGIDKPDTRWVLHYQAPLMLMDYLQEVGRAGRDLQP  336

Query  613  GLAISLVATE  622
               ++LV+  
Sbjct  337  AECLTLVSEP  346


>sp|O27830|HELX_METTH Uncharacterized ATP-dependent helicase MTH_1802 
OS=Methanothermobacter thermautotrophicus (strain ATCC 
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) OX=187420 
GN=MTH_1802 PE=3 SV=1
Length=862

 Score = 98.3 bits (243),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 59/363 (16%), Positives = 136/363 (37%), Gaps = 49/363 (13%)

Query  259  SKAPDGYIVKSQHSGNAQVTQTK---FLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDN  315
            S    G  + +  S  +++T+      L ++   + + P + L      N+++    I +
Sbjct  54   SPTGSGKTLTAFLSIISELTRLADDGELEDSVYCIYISPLKALDNDIERNLEEPLSAIRD  113

Query  316  P--------KLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN--LSQVR  365
                     ++R+ +  G   + ++  +L+    I++ TP  L  L+   K    LS VR
Sbjct  114  IAAGEGRDLEIRKAVRTGDTTSYERSRMLKKPPHILITTPETLSILLVAPKFREKLSTVR  173

Query  366  FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF  425
            ++++DE   L        ++    ++  +  D  R+ +   SAT+H   +++++      
Sbjct  174  YVIVDEIHSLADNKRGVHLSLSLERLQHLVGDFTRIGL---SATVHP--LERVAR-----  223

Query  426  PTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW  485
                              V      + + L   +        D+    +    A+  E+ 
Sbjct  224  ----------------FLVGYSYGSERECLIVDVSYLKELDIDLICPVDDIVAADPEEIG  267

Query  486  SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL  545
            +    IL        I++H+    +IF  T+   +++      +           + +  
Sbjct  268  NALYDILHD-----LIEDHRT--TLIFTNTRSGTESVVYNLKSRFPESYSDS---NIMAH  317

Query  546  HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR  605
            H       R +  E+ K+G+++ ++ +     GIDI  +  V+ ++ P      + RIGR
Sbjct  318  HSSLSREIRLETEEKLKRGELKAVVSSTSLELGIDIGYIDLVVLLSSPKSVSRALQRIGR  377

Query  606  VGR  608
             G 
Sbjct  378  SGH  380


 Score = 43.6 bits (101),  Expect = 0.007, Method: Composition-based stats.
 Identities = 16/62 (26%), Positives = 30/62 (48%), Gaps = 1/62 (2%)

Query  9   VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETL  68
           + P +++      +   T+ Q  +I  I  G +VL+++ TGSGKT    + +I  +    
Sbjct  18  LHPWVSEWFRRT-FDDFTEAQRYAIMDIHRGRNVLVSSPTGSGKTLTAFLSIISELTRLA  76

Query  69  KD  70
            D
Sbjct  77  DD  78


>sp|Q9VDA0|FANCM_DROME DEAD-box ATP-dependent DNA helicase Fancm 
OS=Drosophila melanogaster OX=7227 GN=Fancm PE=1 SV=2
Length=1489

 Score = 98.3 bits (243),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 105/306 (34%), Gaps = 18/306 (6%)

Query  428  WVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSE  487
             V +   D+  D     V+  +     L E++ +        +       G   P     
Sbjct  350  RVFVNNFDADDDGREKFVLARDGNLRNLVEQVRQELGANPLDYTTHAMTNGEVPPLPSDL  409

Query  488  AIKILKGEYAVRAIKEH----KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKK---GHQF  540
                 K E   + + +H       +AI+FC  +     + +  +Q       +   G   
Sbjct  410  DFGHAKYEKLRQVLVQHFQANPDSRAIVFCEYRESVMLIHRLLLQHRPVLRPRCFVGQGS  469

Query  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP-DEKQNY  599
            +    +      ++ Q +  F+ G    L+ T +   G+D+  V  ++   +       +
Sbjct  470  TVGASYA-LTQKQQLQIMTDFRSGTSNVLVATSIGEEGLDVGEVEMIVCFDICSTNPTRF  528

Query  600  VHRIGRVGRAERMGLAISLVATEKE-KVWYHVCSSR---GKGCYNTRLKEDGGCTIWYNE  655
            + RIGR GR  + G  + LV   +E +V   V +++    K   N+ + +        N 
Sbjct  529  IQRIGRTGRK-KNGEVVMLVTEGREQQVLKDVLANKDQINKKLLNSSVVKLSLYE--QNP  585

Query  656  MQLLSEIEEHLNCT-ISQVEPDIKVPVDEFDGKVTYGQKRAAG-GGSYKGHVDILAPTVQ  713
              + S+ +       +  V  +   P      K +  +K+     GS + +     PT  
Sbjct  586  RMVPSKFQPKCEEKHMEPVAEEKPKPKSAAKTKESRKRKQPVAQTGSLRKYFKESPPTES  645

Query  714  ELAALE  719
            +   L+
Sbjct  646  QQGILQ  651


 Score = 39.7 bits (91),  Expect = 0.12, Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 72/233 (31%), Gaps = 21/233 (9%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR  349
            + + P+R L  Q ++  ++   +     ++   + G +    +  +  +   +   TP  
Sbjct  105  VFMAPTRPLVSQQIHASQKIMPFPSEDTVQ---LTGQLPRPKRAELWASK-RVFFATPQV  160

Query  350  LD-DLVSTG---KLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            +  D++            ++ +V+DEA     +     +           +  +  +++ 
Sbjct  161  VHSDMLEADGECSFPFGSIKLIVVDEAHRAKGRYAYTQVADCL------MARNRYFRMLA  214

Query  406  CSATL--HSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-----HVVVPVNPKTDRLWER  458
             SAT      DV  +   +      V       V   +H      +VV +  +     ER
Sbjct  215  LSATPGRTMEDVAAVCRNLYISNLQVRWDTSIDVQPYIHRRTIRTIVVSLKERIKEPRER  274

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAII  511
            L +          +     G       +  +   K      A  +   D  II
Sbjct  275  LLQIIEPYLRQLMEAEIFKGNKGTVSRNSLLFEQKSFVERSAQGQRHPDHNII  327


>sp|A1D1S7|SSH4_NEOFI Protein ssh4 OS=Neosartorya fischeri (strain 
ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 
/ NRRL 181 / WB 181) OX=331117 GN=ssh4 PE=3 SV=1
Length=507

 Score = 96.7 bits (239),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 68/199 (34%), Gaps = 24/199 (12%)

Query  129  MKGKHYYEVSCHDQG---LCRVGWSTMQASLDL--GTDKFGFGFGGTGKKSHNKQFD--N  181
                +Y+E   +++       +G +T    L    G  K    +  TG + +N+ F    
Sbjct  219  QNDVYYWEAKIYEKPESTHISIGMTTKPYPLFRLPGFHKTSVAYLSTGHRRYNQPFSATP  278

Query  182  YGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKN-AELKF  240
            YG      D +G       G + F++NGK L    ++    K Q  FP         +  
Sbjct  279  YGPPLAQGDVVGVGYRPRSGTIFFTRNGKKLE---DVVHGAKTQNFFPTVGANGPCTVHV  335

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPS-RELA  299
            NFG+  F F   +          G +      G+ Q +            I+  S RE A
Sbjct  336  NFGQMGFVFIEANVKKWGLAPMTGSLAPPPPYGSEQGS------------ILLESGRESA  383

Query  300  EQTLNNIKQFKKYIDNPKL  318
             Q    + Q  +     ++
Sbjct  384  AQISQRVYQDARTNSTVRI  402


>sp|P50729|RECS_BACSU Probable ATP-dependent DNA helicase RecS 
OS=Bacillus subtilis (strain 168) OX=224308 GN=recS PE=3 SV=1
Length=496

 Score = 96.4 bits (238),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 68/427 (16%), Positives = 131/427 (31%), Gaps = 61/427 (14%)

Query  235  NAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEP  294
               L   FG   FK   +D   ++    D   +     G +   Q          LIV P
Sbjct  5    QQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSP  64

Query  295  SRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN--GVDIVVGTPGRLDD  352
               L     + ++Q K   +    R   +   +  +++  VLE+      +  +P  L  
Sbjct  65   ---LLSLMEDQVQQLKARGEK---RAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQS  118

Query  353  LVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHS  412
                 KL    +   V+DEA  +   G+       ++++ Q+        V+  +AT   
Sbjct  119  PYVLEKLKSVPISLFVIDEAHCISEWGH--DFRPDYSKLGQLRKKLGHPPVLALTATATK  176

Query  413  FDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAK  472
              ++ +   +                  + H V  +N                       
Sbjct  177  ETLQDVMNLL-----------------ELQHAVRHLNS----------------------  197

Query  473  DNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGG  532
                   N       A    +    V  + E+     I++C T+     L      +   
Sbjct  198  ---VNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKWAKELAGEIKSKTSS  254

Query  533  PDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTL  592
                         HG  +  +R    ++F    +  + CT+    G+D   + YVI+  L
Sbjct  255  RADF--------YHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHL  306

Query  593  PDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT-RLKEDGGCTI  651
            P   + ++  IGR GR  +  ++I L A    ++   +             +      T 
Sbjct  307  PQTAEAFMQEIGRAGRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTE  366

Query  652  WYNEMQL  658
              +E +L
Sbjct  367  ERDERRL  373


 Score = 37.4 bits (85),  Expect = 0.47, Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (45%), Gaps = 1/49 (2%)

Query  12  EIAQAVEEM-DWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP  59
           ++ Q + +   +      Q + I  IL G D +    TG GK+  + +P
Sbjct  3   KLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLP  51


>sp|Q4WRW0|SSH4_ASPFU Protein ssh4 OS=Aspergillus fumigatus (strain 
ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 
GN=ssh4 PE=3 SV=2
Length=507

 Score = 96.4 bits (238),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 41/199 (21%), Positives = 69/199 (35%), Gaps = 24/199 (12%)

Query  129  MKGKHYYEVSCHDQG---LCRVGWSTMQASLDL--GTDKFGFGFGGTGKKSHNKQFD--N  181
                +Y+E   +++    L  +G +T    L    G  K    +  TG + +N+ F    
Sbjct  219  QNDVYYWEAKIYEKPESTLISIGMTTKPYPLFRLPGFHKTSVAYLSTGHRRYNQPFSASP  278

Query  182  YGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKN-AELKF  240
            YG      D +G       G + F++NGK L    ++    K Q  FP         +  
Sbjct  279  YGPALAQGDVVGVGYRPRSGTIFFTRNGKKLE---DVVHGAKTQNFFPTVGANGPCTVHV  335

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPS-RELA  299
            NFG+  F F   +          G +      G+ Q +            I+  S RE A
Sbjct  336  NFGQMGFVFIEANVKKWGLAPMTGSLAPPPPYGSEQGS------------ILLESGRESA  383

Query  300  EQTLNNIKQFKKYIDNPKL  318
             Q    + Q  +     ++
Sbjct  384  AQISQRVYQDARTSSTVRI  402


>sp|O93530|WRN_XENLA Bifunctional 3'-5' exonuclease/ATP-dependent 
helicase WRN OS=Xenopus laevis OX=8355 GN=wrn PE=1 SV=1
Length=1436

 Score = 97.9 bits (242),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 72/473 (15%), Positives = 152/473 (32%), Gaps = 85/473 (18%)

Query  238  LKFNFGEEEFKFPP-KDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSR  296
            LK  FG   FK    K     L +  D  +V +   G +   Q   +  +   +++ P  
Sbjct  481  LKTYFGHSSFKPVQWKVVHSVLRERRDNLVVMATGYGKSLCYQFAPVYTSGIGIVICP--  538

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP---GRLDDL  353
             L     + + Q     +   +    +    +      V +  + ++  TP    R   L
Sbjct  539  -LISLMEDQVLQL----EMSNISSCFLGSAQSKNVLQDVKDGKMRVIYMTPEFCSRGISL  593

Query  354  VSTGKLNLSQ---VRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATL  410
            +     +L     +  + +DEA  +   G+       +  +  +      + ++  +AT 
Sbjct  594  LQ----DLDNRYGITLIAIDEAHCISEWGH--DFRSAYRSLGSLKRMLPNVPIVALTATA  647

Query  411  HSFDVKKLSEKI-MHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDV  469
                 + +++ + +H P       +        ++ + V  KT  +   L +  I+    
Sbjct  648  SPSIREDITKSLNLHNPQVTCTSFDRP------NLYLDVARKTTNISIDLRQFLIKKQQG  701

Query  470  HAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQ  529
               +                                    I++C T+   + +    I+ 
Sbjct  702  SGWEFEGA-------------------------------TIVYCPTRKTSEQVTAELIKL  730

Query  530  GGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVIN  589
            G          +C   H      +R++   RF + ++  ++ T     GI+   +  VI+
Sbjct  731  G---------IACGTYHAGMGIKQRREVHHRFMRDEIHCVVATVAFGMGINKPDIRKVIH  781

Query  590  VTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR-GKGCYNTRLKEDGG  648
               P E ++Y   IGR GR        +L A        H+      KG    +LK    
Sbjct  782  YGAPKEMESYYQEIGRAGRDGLPSCCHALWAQADMNFNRHMLGEIPNKGFREYKLK----  837

Query  649  CTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSY  701
                     +L+++E++LN +        K+ +  F+ K          G   
Sbjct  838  ---------MLTKMEKYLNSS----TCRRKIILSHFEDKQLRKASSGIMGTEK  877


>sp|Q9FT73|RECQ2_ARATH ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis 
thaliana OX=3702 GN=RECQL2 PE=1 SV=1
Length=705

 Score = 97.1 bits (240),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 63/405 (16%), Positives = 139/405 (34%), Gaps = 78/405 (19%)

Query  236  AELKFN-FGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEP  294
             +++FN FG  +++   K+   A+    D  ++ +   G +   Q   +      L+V P
Sbjct  78   DDVRFNVFGISKYRANQKEIINAIMTGRDVLVIMAAGGGKSLCYQLPAMLRGGTTLVVSP  137

Query  295  SRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQL---SVLENGVD---IVVGTP-  347
               L     + +           +   ++       ++      LE G D   I+  TP 
Sbjct  138  ---LLSLIQDQVMGLAAL----GISAYMLTSTSGKENEKFVYKALEKGEDDLKILYVTPE  190

Query  348  ---------GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
                      +L+   + G+L+L  +     DEA      G+       +  +  + +  
Sbjct  191  KVSKSKRFMSKLEKCHNAGRLSLISI-----DEAHCCSQWGH--DFRPDYKNLSILKTQF  243

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER  458
             ++ ++  +AT  +  V+    +++H P  V      + P+    +   V  K+      
Sbjct  244  PKVPMVALTAT-ATQKVQNDLIEMLHIPKCVKFVSSVNRPN----LFYSVREKS------  292

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
                                A    +  E  + ++  Y+         +  I++C ++ +
Sbjct  293  --------------------AVGKLVVDEIAEFIRESYS-------NNESGIVYCFSRKE  325

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
            C+ +     ++G          S    H D   + R++   R+ K  ++ ++ T     G
Sbjct  326  CEQIAGDLRERG---------ISADYYHADMDANMREKVHMRWSKNKLQVIVGTVAFGMG  376

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
            I+   V +VI+ +L    + Y    GR GR       I    +  
Sbjct  377  INKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECILFFRSAD  421


>sp|P85199|RH3_HELAN DEAD-box ATP-dependent RNA helicase 3 (Fragment) 
OS=Helianthus annuus OX=4232 PE=1 SV=1
Length=234

 Score = 91.3 bits (225),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 46/107 (43%), Gaps = 0/107 (0%)

Query  5    SEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIV  64
            S +G+  ++ + +E+        IQ   +   L G D++  A+TG+GKT AF+IP+I+ +
Sbjct  123  SRLGLPQKLVETLEKRGITKLFPIQRAVLVPALEGRDIIGRAKTGTGKTLAFAIPIIKRL  182

Query  65   YETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCC  111
             E  +D +    G+       +   +            A     +C 
Sbjct  183  TEEDEDNRNSLAGRLPRVLVLAPTRELAKQVETEIKEPAPYLRTVCV  229


 Score = 53.6 bits (127),  Expect = 2e-06, Method: Composition-based stats.
 Identities = 19/84 (23%), Positives = 34/84 (40%), Gaps = 11/84 (13%)

Query  251  PKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNA------PKALIVEPSRELAEQTLN  304
                 +  +K   G  +        ++T+             P+ L++ P+RELA+Q   
Sbjct  156  EGRDIIGRAKTGTGKTLAFAIPIIKRLTEEDEDNRNSLAGRLPRVLVLAPTRELAKQVET  215

Query  305  NIKQFKKYIDNPKLRELLIIGGVA  328
             IK+       P LR + + GGV+
Sbjct  216  EIKE-----PAPYLRTVCVYGGVS  234


>sp|Q2H679|MRH4_CHAGB ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 
/ DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=MRH4 PE=3 
SV=1
Length=576

 Score = 96.4 bits (238),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 64/351 (18%), Positives = 124/351 (35%), Gaps = 51/351 (15%)

Query  277  VTQTKFLPNA--PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLS  334
            + + +  PN   P+A+++ P+ EL +Q L   K+                 G       S
Sbjct  258  IDKFEPHPNHARPRAIVLVPTSELVDQVLAASKK-------------NFPRGQDQTTAAS  304

Query  335  VLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV  394
                   I   T  R+  L+S+     S +     DEAD L  + ++   +++       
Sbjct  305  TWSLPPRIFSPT-WRIVTLISSRVCTTSSI-----DEADSLFDRSFAPETSKIVE-----  353

Query  395  TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDR  454
             +     Q+I+CSAT+       L+         +      ++P  V   V+ V+     
Sbjct  354  RAMPSLKQLILCSATIPRRLDNYLA-AHFPNIVRIATPNLHAIPRRVQLGVIDVSKDPLP  412

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
                   SH       A+   R  +       +AI + +     R  +         F  
Sbjct  413  PTTSWLASHHGLCQTSARPPRRWPSTLVSKGIDAIALHRDTPEHRQSEMLNS-----FTT  467

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
            T+            +    + + ++ + +   G                 + + ++ TD+
Sbjct  468  TE----------PMRLSKAEVEANKQAALAKAGGVSKRH---------LANTKVIVATDL  508

Query  575  AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
            A+RGID   V +V+   +P    +++HR+GR GR  R G  + LV  +  +
Sbjct  509  ASRGIDTLAVRHVVLYDVPHTTIDFIHRLGRAGRMGRRGRGVVLVGKDDRR  559


 Score = 54.0 bits (128),  Expect = 4e-06, Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 24/92 (26%)

Query  24   LPTDIQAESIPLILGGG-------------------DVLMAAETGSGKTGAFSIPVIQIV  64
             PT +Q  +IP +LG                     + L+AAETGSGKT A+ +P+I  +
Sbjct  166  KPTPVQRLAIPALLGQRIGQQRETNHRRAAPESKREEFLLAAETGSGKTLAYLLPIINAL  225

Query  65   YETLKDQQEGKK-----GKTTIKTGASVLNKW  91
                 D  + K           + G + +++W
Sbjct  226  KVAEADDVDAKAYNVRLEAEKERRGGTPVSEW  257


>sp|P35187|SGS1_YEAST ATP-dependent helicase SGS1 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SGS1 
PE=1 SV=1
Length=1447

 Score = 96.4 bits (238),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 49/327 (15%), Positives = 102/327 (31%), Gaps = 31/327 (9%)

Query  417   KLSEKIMHFPTWVDLKGEDSVPDTVHHVV-------VPVNPKTDRLWERLGKSHIRTDDV  469
             KL+  ++     V   G D  PD             +P+   T    E++    I   ++
Sbjct  801   KLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDIPMIALTATASEQVRMDIIHNLEL  860

Query  470   HAKDNTRPGANSPEMWSEAIKILKG---EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
                   +   N   ++ E  K  K    E         K    II+C +K  C+      
Sbjct  861   KEPVFLKQSFNRTNLYYEVNKKTKNTIFEICDAVKSRFKNQTGIIYCHSKKSCEQTSAQM  920

Query  527   IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
              + G           C   H   +P ER    + ++  +++ +  T     GID   V +
Sbjct  921   QRNG---------IKCAYYHAGMEPDERLSVQKAWQADEIQVICATVAFGMGIDKPDVRF  971

Query  587   VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKED  646
             V + T+P   + Y    GR GR       I+  +    +    +           +  ++
Sbjct  972   VYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFSFRDIRTMQTMI----------QKDKN  1021

Query  647   GGCTIWYNEMQLLSEIEEHLNCTISQVEP-DIKVPVDEFDGKVTYGQ-KRAAGGGSYKGH  704
                      +  L ++  + +          +    ++FD K+ +          +    
Sbjct  1022  LDRENKEKHLNKLQQVMAYCDNVTDCRRKLVLSYFNEDFDSKLCHKNCDNCRNSANVINE  1081

Query  705   VDILAPTVQELAALEKEAQTSFLHLGY  731
                +    +++  L +  Q   + + Y
Sbjct  1082  ERDVTEPAKKIVKLVESIQNERVTIIY  1108


 Score = 37.0 bits (84),  Expect = 0.93, Method: Composition-based stats.
 Identities = 15/56 (27%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query  10   MPEIAQAVEEMDWLLP--TDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
              E+   + E+ + LP     Q E++   L G DV +   TG GK+  + +P +  
Sbjct  663  SDEVLYRLHEV-FKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVK  717


>sp|Q96UB6|SSH4_NEUCR Protein ssh4 OS=Neurospora crassa (strain 
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) 
OX=367110 GN=ssh4 PE=3 SV=2
Length=503

 Score = 94.4 bits (233),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 35/154 (23%), Positives = 63/154 (41%), Gaps = 11/154 (7%)

Query  133  HYYEVSCHDQG---LCRVGWSTMQASLDL--GTDKFGFGFGGTGKKSHNKQFD--NYGEE  185
            +Y+E   +D+    L  +G +T    L    G  K+   +   G + +N+ F+  +YG +
Sbjct  158  YYWEAKIYDKPENTLISIGMATKPYPLFRLPGFHKYSVAYLSNGTRRYNQPFNATSYGPQ  217

Query  186  FTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKN-AELKFNFGE  244
                D IG       G + F++NGK L    ++   +K+Q  FP+        +  NFG+
Sbjct  218  VVQGDVIGVGYRPRSGTIFFTRNGKKLE---DVVHGLKSQNFFPSIGANGPCIVHVNFGQ  274

Query  245  EEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVT  278
              F F   +          G +      G+ Q +
Sbjct  275  AGFVFIEANVKKWGLAPMTGSLAPPPPYGSEQGS  308


>sp|Q9TS33|RYR3_RABIT Ryanodine receptor 3 OS=Oryctolagus cuniculus 
OX=9986 GN=RYR3 PE=1 SV=1
Length=4872

 Score = 96.4 bits (238),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 35/189 (19%), Positives = 66/189 (35%), Gaps = 9/189 (5%)

Query  68    LKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATKG  127
             L D++  K  + +++        +  N        A     +   S +   +     +  
Sbjct  1024  LLDERTKKSNRDSLREAVRTFVGYGYNIEPSDQELA--DPAVEKVSIDKIRFFRVERSYA  1081

Query  128   LMKGKHYYEVSCHDQGLCRVGWST--MQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEE  185
             +  GK Y+E      G  RVGW+    +  ++LG           G     K     G  
Sbjct  1082  VRSGKWYFEFEVVTGGDMRVGWARPGCRPDIELGPMTKPLCLKAAGASVGTKVVGILGVP  1141

Query  186   FTMHDTIGCYLDIDKGHVKFSKNGKDL----GLAFEIPPHMKNQALFPACVLKNAEL-KF  240
             +   D +GC +++D   + F+ NG+ L    G       +       P C L  +++ + 
Sbjct  1142  WQPGDVVGCMINLDDASMIFTLNGELLITNKGSELAFADYEIENGFVPICSLGLSQIGRM  1201

Query  241   NFGEEEFKF  249
             N G +   F
Sbjct  1202  NLGTDASTF  1210


 Score = 47.4 bits (111),  Expect = 6e-04, Method: Composition-based stats.
 Identities = 32/154 (21%), Positives = 52/154 (34%), Gaps = 32/154 (21%)

Query  132  KHYYEVSC--------HDQGLCRVGWSTMQA------------SLDLGTDKFGFGFGGTG  171
            K Y+E+           +    RVGW++                  +G D + +GF G  
Sbjct  659  KWYFELIIDQVDPFLTAEPTHLRVGWASSSGYAPYPGGGEGWGGNGVGDDLYSYGFDG--  716

Query  172  KKSHNKQFDNYGEEFTMH-----DTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQA  226
                + +          H     D + C LD+    + F  NG+ +   FE      +  
Sbjct  717  LHLWSGRIPRAVASINQHLLKSDDVVSCCLDLGVPSISFRINGQPVQGMFENFN--TDGL  774

Query  227  LFPACVLK-NAELKFNFGEE--EFKFPPKDGFVA  257
             FP        +++F  G    EFKF P  G+  
Sbjct  775  FFPVMSFSAGVKVRFLMGGRHGEFKFLPPSGYAP  808


 Score = 41.7 bits (96),  Expect = 0.030, Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 34/67 (51%), Gaps = 6/67 (9%)

Query  192   IGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLK---NAELKFNFGEEEFK  248
             IGC +D+  G + FS NGK+LG  +++ P+ K    FPA  L+    +  +F  G+ +  
Sbjct  1411  IGCLVDLAMGMLSFSANGKELGTCYQVEPNTKV---FPAVFLQPTSTSLFQFELGKLKNA  1467

Query  249   FPPKDGF  255
              P     
Sbjct  1468  MPLSAAI  1474


>sp|O34748|RECQ_BACSU ATP-dependent DNA helicase RecQ OS=Bacillus 
subtilis (strain 168) OX=224308 GN=recQ PE=1 SV=1
Length=591

 Score = 94.8 bits (234),  Expect = 7e-19, Method: Composition-based stats.
 Identities = 62/394 (16%), Positives = 139/394 (35%), Gaps = 66/394 (17%)

Query  235  NAELKFNFGEEEFKFPPKDGFVALSKAPDGYI-VKSQHSGNAQVTQTKFLPNAPKALIVE  293
             + L   FG E+F+    +    +++A      +     G +   Q   L      +++ 
Sbjct  6    QSLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVIS  65

Query  294  PSRELAEQTLNNIKQFK---KYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV-GTPGR  349
            P   L +  ++ +++      YI++ +             ++L+ L+ G   +   TP R
Sbjct  66   PLISLMKDQVDALEEAGINAAYINSTQ-------SNQEIYERLNGLKEGAYKLFYITPER  118

Query  350  LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSAT  409
            L  +     L    V  + +DEA  +   G+                  + ++++     
Sbjct  119  LTSIEFIRILQGIDVPLVAIDEAHCISQWGHD------------FRPSYRNIEILF----  162

Query  410  LHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDV  469
                  ++L +K    P  + L    +    VH  +               + HI+ ++ 
Sbjct  163  ------RELHDK----PVIMALTA--TATPEVHDDICK-------------QLHIQKENT  197

Query  470  HAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQ  529
                 +R       +  E       EY    ++ ++ +  I++  T+ + D + +     
Sbjct  198  VYTGFSRENLTFKVVKGENKDRFIDEY----VQNNRHEAGIVYTATRKEADRIYERL---  250

Query  530  GGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVIN  589
                  K +Q      HG      RK+  ERF   +++ ++ T     GID   + +V++
Sbjct  251  ------KRNQVRAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLH  304

Query  590  VTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
              +P + ++Y    GR GR       + L + + 
Sbjct  305  AQIPKDMESYYQEAGRAGRDGLASECVLLFSPQD  338


>sp|Q8VID5|RECQ5_MOUSE ATP-dependent DNA helicase Q5 OS=Mus musculus 
OX=10090 GN=Recql5 PE=1 SV=1
Length=982

 Score = 95.2 bits (235),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 61/446 (14%), Positives = 128/446 (29%), Gaps = 71/446 (16%)

Query  236  AELKFNFGEEEFKFPPKDGFVA--LSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVE  293
            + LK  FG + FK P ++      +  A D ++     +G +   Q   L  +   ++V 
Sbjct  18   STLKKVFGFDSFKTPLQESATMAVVKGAEDVFVCMPTGAGKSLCYQLPALLASGITIVVS  77

Query  294  PSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN------GVDIVVGTP  347
            P   L     + +          K++   +   ++ +++  +L +         ++  TP
Sbjct  78   P---LIALIQDQVDHLLAL----KVQVSSLNSKLSVQERKELLSDLERDKPRTKLLYITP  130

Query  348  ---------GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG  398
                       L+ LVS   L+     +LV+DEA  +   G+    + +     +     
Sbjct  131  EMAASASFQPTLNSLVSRNLLS-----YLVVDEAHCVSQWGHDFRPDYLRLGALRSRLAH  185

Query  399  KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER  458
                 +  +AT         +   +  P                                
Sbjct  186  APCVALTATAT-PQVQEDVFAALHLKQPV-------------------------------  213

Query  459  LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID  518
                       +   + +     P+++             +A         I++CRT+  
Sbjct  214  -ASFKTPCFRANLFYDVQFKELIPDVYGNLRDFCLKALGQKAENGSSSGCGIVYCRTREA  272

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
            C+ L      +G          +    H   K  +R Q    + +  V  ++ T     G
Sbjct  273  CEQLAIELSSRG---------VNAKAYHAGLKASDRTQVQNEWMEEKVPVIVATISFGMG  323

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGC  638
            +D   V +V +  +      Y    GR GR  +        +         +        
Sbjct  324  VDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKELAKL  383

Query  639  YNTRLKEDGGCTIWYNEMQLLSEIEE  664
               R  +            L++  EE
Sbjct  384  QEKRGNKPSDKATLLAFDALVTFCEE  409


 Score = 35.1 bits (79),  Expect = 2.8, Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 1/37 (3%)

Query  26  TDIQAESIPLILGG-GDVLMAAETGSGKTGAFSIPVI  61
           T +Q  +   ++ G  DV +   TG+GK+  + +P +
Sbjct  31  TPLQESATMAVVKGAEDVFVCMPTGAGKSLCYQLPAL  67


>sp|P30015|LHR_ECOLI Probable ATP-dependent helicase Lhr OS=Escherichia 
coli (strain K12) OX=83333 GN=lhr PE=3 SV=2
Length=1538

 Score = 93.7 bits (231),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 61/378 (16%), Positives = 118/378 (31%), Gaps = 57/378 (15%)

Query  265  YIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDN---------  315
            Y +        + T+        + L + P + L      N++   K I +         
Sbjct  64   YALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETE  123

Query  316  PKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN-LSQVRFLVLDEADG  374
              LR  +  G   A+++  +  N  DI++ TP  L  ++++     L  V  +++DE   
Sbjct  124  VNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHA  183

Query  375  LLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE  434
            +        +     ++  +     +   +  SAT+ S      +      P  V     
Sbjct  184  VAGSKRGAHLALSLERLDALLHTSAQRIGL--SATVRSAS-DVAAFLGGDRPVTV-----  235

Query  435  DSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG  494
                         VNP   R  +      +   D  +   +  G +S      +I     
Sbjct  236  -------------VNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIE  282

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQ---------------  539
               +  +  H+    I+F  ++   + L     +      ++                  
Sbjct  283  TGILDEVLRHR--STIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGAT  340

Query  540  ---------FSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINV  590
                     F     HG     +R    +  K G++R ++ T     GID+  V  VI V
Sbjct  341  SNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQV  400

Query  591  TLPDEKQNYVHRIGRVGR  608
              P    + + RIGR G 
Sbjct  401  ATPLSVASGLQRIGRAGH  418


 Score = 47.8 bits (112),  Expect = 5e-04, Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 39/96 (41%), Gaps = 4/96 (4%)

Query  22   WLLPTDIQAESIPLILGGGDVLMAAETGSGKT-GAFSIPVIQIVYETLKDQQEGKKGKTT  80
            +  PT +Q ++  +       L+ A TGSGKT  AF   + ++  E  +D +E  K KT+
Sbjct  27   FKQPTAVQPQTWHVAARSEHALVIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTS  86

Query  81   IKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREV  116
                 S +        D      I   G+  + R  
Sbjct  87   RILYISPIKALGT---DVQRNLQIPLKGIADERRRR  119


>sp|Q14191|WRN_HUMAN Bifunctional 3'-5' exonuclease/ATP-dependent 
helicase WRN OS=Homo sapiens OX=9606 GN=WRN PE=1 SV=2
Length=1432

 Score = 92.9 bits (229),  Expect = 6e-18, Method: Composition-based stats.
 Identities = 75/478 (16%), Positives = 150/478 (31%), Gaps = 89/478 (19%)

Query  234  KNAELKFNFGEEEFKFPPKDGFVA-LSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIV  292
            +   LK  FG   FK        + L +  D   V +   G +   Q   +      L++
Sbjct  536  QVTCLKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVI  595

Query  293  EPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG-VDIVVGTP----  347
             P   L     + + Q K  + N        +G   + + L+ ++ G   IV  TP    
Sbjct  596  SP---LISLMEDQVLQLK--MSNI---PACFLGSAQSENVLTDIKLGKYRIVYVTPEYCS  647

Query  348  ---GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
               G L  L +   + L  V     DEA  +   G+         ++  + +    + ++
Sbjct  648  GNMGLLQQLEADIGITLIAV-----DEAHCISEWGH--DFRDSFRKLGSLKTALPMVPIV  700

Query  405  VCSATLHSFDVKKLSE-KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
              +AT  S   + +     +  P       +        ++ + V  KT  + + L    
Sbjct  701  ALTATASSSIREDIVRCLNLRNPQITCTGFDRP------NLYLEVRRKTGNILQDLQPFL  754

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
            ++T      +                                    II+C ++     + 
Sbjct  755  VKTSSHWEFE---------------------------------GPTIIYCPSRKMTQQVT  781

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
                +            SC   H       RK    RF + +++ +I T     GI+   
Sbjct  782  GELRKL---------NLSCGTYHAGMSFSTRKDIHHRFVRDEIQCVIATIAFGMGINKAD  832

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRL  643
            +  VI+   P + ++Y   IGR GR         L A     +  H+            L
Sbjct  833  IRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHL------------L  880

Query  644  KEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSY  701
             E         ++++++++E++L+ +        ++ +  F+ K          G   
Sbjct  881  TEIRNEKFRLYKLKMMAKMEKYLHSS----RCRRQIILSHFEDKQVQKASLGIMGTEK  934


>sp|P50830|YPRA_BACSU Uncharacterized ATP-dependent helicase YprA 
OS=Bacillus subtilis (strain 168) OX=224308 GN=yprA PE=1 
SV=1
Length=749

 Score = 91.7 bits (226),  Expect = 8e-18, Method: Composition-based stats.
 Identities = 68/409 (17%), Positives = 141/409 (34%), Gaps = 59/409 (14%)

Query  254  GFVALSKAPDGYIVKSQHSGNAQ-----VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQ  308
             F  + K      V    SG        V Q+       +AL + P++ LA+   + + +
Sbjct  62   AFQYVQKGESIVTVTPTASGKTLCYNLPVLQSIAQDETNRALYLFPTKALAQDQKSELNE  121

Query  309  FKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN----LSQV  364
                +    ++     G  +   +  V + G  IV+  P  L   +             +
Sbjct  122  IIDEM-GIDIKSFTYDGDTSPAIRQKVRKAG-HIVITNPDMLHSAILPHHTKWVSLFENL  179

Query  365  RFLVLDEADG---LLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEK  421
            +++V+DE      +     ++ I R+        SD   +     SAT+   + K+L E+
Sbjct  180  KYIVIDELHTYRGVFGSHVANVIRRLKRICRFYGSDPVFICT---SATI--ANPKELGEQ  234

Query  422  IMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANS  481
            +   P    L  ++  P    H V    P                  +  K      + +
Sbjct  235  LTGKPMR--LVDDNGAPSGRKHFVFYNPP------------------IVNKPLNIRRSAT  274

Query  482  PEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFS  541
             E+   A + LK +            Q I+F R+++  + +  +  +      K+    S
Sbjct  275  AEVNELAKEFLKNKV-----------QTIVFARSRVRVEIILSHIQEL---VKKEIGTKS  320

Query  542  CVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH  601
                 G   P ER++     ++GD+  ++ T+    G+DI  +   +    P    +   
Sbjct  321  IRGYRGGYLPKERREIERGLREGDILGVVSTNALELGVDIGQLQVCVMTGYPGSVASAWQ  380

Query  602  RIGRVGRAERMGLAISLV----ATEKEKVWYHVCSSRGKGCYNTRLKED  646
            + GR GR  R G ++ ++        + +  H      +   + R+  +
Sbjct  381  QAGRAGR--RHGESLIIMVANSTPIDQYIVRHPEYFFNRSPESARINPE  427


 Score = 37.8 bits (86),  Expect = 0.46, Method: Composition-based stats.
 Identities = 12/58 (21%), Positives = 25/58 (43%), Gaps = 0/58 (0%)

Query  9   VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYE  66
           +   I  A+ +         Q  +   +  G  ++    T SGKT  +++PV+Q + +
Sbjct  39  IDERIKAALSKRGIDELYTHQYSAFQYVQKGESIVTVTPTASGKTLCYNLPVLQSIAQ  96


>sp|Q9FT74|RQL1_ARATH ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis 
thaliana OX=3702 GN=RECQL1 PE=2 SV=1
Length=606

 Score = 90.6 bits (223),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 66/393 (17%), Positives = 132/393 (34%), Gaps = 69/393 (18%)

Query  242  FGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSREL-AE  300
            FG + F+        A  +  D +++     G +   Q      A   +++ P   L  +
Sbjct  202  FGNKVFRPLQHQACRASMERKDCFVLMPTGGGKSLCYQLPATLKAGVTIVISPLLSLIQD  261

Query  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG-VDIVVGTPGRLDDLVSTGKL  359
            Q +    +F   I    L         AA  Q    +N    ++  TP    + ++    
Sbjct  262  QIVALNLKFG--IPATFLNSQQTSSQAAAVLQELRRDNPSCKLLYVTP----EKIAGSSS  315

Query  360  NLSQVRFL---------VLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATL  410
             L  +R L         V+DEA  +   G+       + ++  +  +  R+ V+  +AT 
Sbjct  316  FLETLRCLDRKGLLAGFVVDEAHCVSQWGH--DFRPDYRELGCLKQNFPRVPVMALTAT-  372

Query  411  HSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVH  470
                                   E    D +  + +P  P     ++R+   +       
Sbjct  373  ---------------------ATESVCQDVLKSLRIPRAPVLKMSFDRINLKY-------  404

Query  471  AKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQG  530
                      + E   +  ++L+  +        K    I++C +K +C ++ ++  ++ 
Sbjct  405  -----EVIVKTKEPLKQLQELLRDRF--------KDQSGIVYCLSKSECVDVAKFLNEK-  450

Query  531  GGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINV  590
                    +   V  H      +R     +++ G+VR +  T     GID   V +VI+ 
Sbjct  451  -------CKVKTVYYHAGVPAKQRVDVQRKWQTGEVRIVCATIAFGMGIDKADVRFVIHN  503

Query  591  TLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
            TL    ++Y    GR GR       I L   + 
Sbjct  504  TLSKAVESYYQESGRAGRDGLQAQCICLYQKKD  536


>sp|A2R345|DCL21_ASPNC Dicer-like protein 2-1 OS=Aspergillus niger 
(strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 
GN=dcl2-1 PE=3 SV=2
Length=1387

 Score = 91.3 bits (225),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 59/343 (17%), Positives = 108/343 (31%), Gaps = 32/343 (9%)

Query  341  DIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR  400
             I+  TP  LDDL    ++    ++ LV   A   L      +I ++     +   DG+ 
Sbjct  228  QILF-TPVLLDDL----QVGSKTLKALV--SAWTSLRLEDDPYIKKLR----KSPLDGRA  276

Query  401  LQVIVCS-ATLHSFDVKKLSEKIMH-FPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL-WE  457
            LQ ++ S  T  +  +K+ + + +H F    +   +  +  ++  +        D + W 
Sbjct  277  LQKVLESGKTYCNDQLKRFATRSLHIFEELGEWAADYFIHASIEQLKARAGNSADTMGWT  336

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
               K+++               +S           +        K       +IF + + 
Sbjct  337  DEEKAYLLDIVSKLPIPNIDLTHSDPDRIPISSKFRSLLEFLDTKGEPNFSGLIFAKQRA  396

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCL---HGD---------RKPHERKQNLERFKKGD  565
                +E+             H+F C       G               ++  L  F+ G 
Sbjct  397  TVSVMEKLL----SIHPVTKHRFRCASFVGWSGGGSKDVLGELLDARMQRDTLSEFRTGQ  452

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
               +I TDV   GIDI     V+    P   +++V R GR  R  +   AI     ++  
Sbjct  453  KNLIIATDVLEEGIDISACSVVVCFDKPPNLKSFVQRRGR-ARHRQSTYAIMFATDDESS  511

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNC  668
                               E      W  E  +  E+ E L  
Sbjct  512  ALSKWEDLEQAMIEAYEDDERRLREAWALEA-INEEVVERLEV  553


 Score = 36.6 bits (83),  Expect = 1.1, Method: Composition-based stats.
 Identities = 44/324 (14%), Positives = 104/324 (32%), Gaps = 27/324 (8%)

Query  275  AQVTQTKFLPNAPKALI--VEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR--  330
            A +   K L + P  LI  + P+  L  Q    +       + P +R   +         
Sbjct  49   ALLRIIKELESNPHKLIWFLTPTVALCLQQFKFLSD-----NIPAVRARTLTSLDKVELW  103

Query  331  -DQL--SVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM  387
             +Q     +   + +VV T   L D +S G + ++Q+  ++ DEA   + +  ++ I + 
Sbjct  104  TEQPVWDAILKEMQVVVSTHAVLADAMSHGFVKITQLGLMIFDEAHHCMRRHPANKIMQD  163

Query  388  HNQIPQVTSDGKRLQVIV-CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVV  446
                       + +  I+  +A+      ++   KI      V         + + H   
Sbjct  164  FYHPALERHGAEAVPKILGLTASPVVRSNRQELLKIESNLDAVCKTPRTHRSELMTHTHR  223

Query  447  PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM  506
            P   +       L    + +  + A  +        +                  K  + 
Sbjct  224  PHLQQILFTPVLLDDLQVGSKTLKALVSAWTSLRLEDDPYIKKLRKSPLDGRALQKVLES  283

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP-HERKQNLER---FK  562
             +   +C      D L+++  +     ++ G   +   +H   +    R  N      + 
Sbjct  284  GKT--YCN-----DQLKRFATRSLHIFEELGEWAADYFIHASIEQLKARAGNSADTMGWT  336

Query  563  KGDVRFLICTDVAARGIDIHGVPY  586
              +  +L+  D+ ++ + I  +  
Sbjct  337  DEEKAYLL--DIVSK-LPIPNIDL  357


>sp|O09053|WRN_MOUSE Bifunctional 3'-5' exonuclease/ATP-dependent 
helicase WRN OS=Mus musculus OX=10090 GN=Wrn PE=1 SV=3
Length=1401

 Score = 91.0 bits (224),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 68/432 (16%), Positives = 132/432 (31%), Gaps = 65/432 (15%)

Query  238  LKFNFGEEEFKFPPKDGFVA-LSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSR  296
            LK  FG   FK        + L +  D  +V +   G +   Q   +      +++ P  
Sbjct  504  LKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVISP--  561

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP----GRLDD  352
             L     + + Q     +   +   L+    +      V      ++  TP    G L D
Sbjct  562  -LISLMEDQVLQL----ELSNVPACLLGSAQSKNILGDVKLGKYRVIYITPEFCSGNL-D  615

Query  353  LVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHS  412
            L+     ++  +  + +DEA  +   G+          +  + +    + VI  SAT  S
Sbjct  616  LLQQLDSSIG-ITLIAVDEAHCISEWGH--DFRSSFRMLGSLKTALPLVPVIALSATASS  672

Query  413  FDVKKLSE-KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHA  471
               + +     +  P       +        ++ + V  KT  + + L    +R      
Sbjct  673  SIREDIISCLNLKDPQITCTGFDRP------NLYLEVGRKTGNILQDLKPFLVRKASSAW  726

Query  472  KDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGG  531
            +                                     II+C ++   + +     +   
Sbjct  727  EFE--------------------------------GPTIIYCPSRKMTEQVTAELGKL--  752

Query  532  GPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT  591
                     +C   H   K  ERK    RF + +++ ++ T     GI+   +  VI+  
Sbjct  753  -------NLACRTYHAGMKISERKDVHHRFLRDEIQCVVATVAFGMGINKADIRKVIHYG  805

Query  592  LPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH-VCSSRGKGCYNTRLKEDGGCT  650
             P E ++Y   IGR GR         L A        + +     +     +LK      
Sbjct  806  APKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNTSRNLLIEIHDEKFRLYKLKMMVKME  865

Query  651  IWYNEMQLLSEI  662
             + +  Q    I
Sbjct  866  KYLHSSQCRRRI  877


>sp|Q9FT72|RQL3_ARATH ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis 
thaliana OX=3702 GN=RECQL3 PE=1 SV=1
Length=713

 Score = 89.0 bits (219),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 61/407 (15%), Positives = 129/407 (32%), Gaps = 69/407 (17%)

Query  236  AELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEP-  294
              L+++FG  +F+    +   A+    D + +     G +   Q   L      L+V P 
Sbjct  26   KLLRWHFGHADFRGKQLEAIQAVVSGRDCFCLMPTGGGKSICYQIPALAKPGIVLVVSPL  85

Query  295  -----SRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG-  348
                 ++ +A +      ++        ++  +     + +  + +L    + ++ T G 
Sbjct  86   IALMENQVMALKEKGIAAEYLSSTQATHVKNKIHEDLDSGKPSVRLLYVTPE-LIATKGF  144

Query  349  --RLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
              +L  L S G LNL     + +DEA  + S G+       + Q+  +      + V+  
Sbjct  145  MLKLRKLHSRGLLNL-----IAIDEAHCISSWGH--DFRPSYRQLSTLRDSLADVPVLAL  197

Query  407  SATL-HSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
            +AT         +    +  P    +         + + V                    
Sbjct  198  TATAAPKVQKDVIDSLNLRNPL---VLKSSFNRPNIFYEV--------------------  234

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                      R        +++   +LK    +          AII+C  +  CD+L  +
Sbjct  235  ----------RYKDLLDNAYTDLGNLLKSCGNIC---------AIIYCLERTTCDDLSVH  275

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
                G          S    H       R   L+ +     + ++ T     GID   V 
Sbjct  276  LSSIG---------ISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMGIDKKDVR  326

Query  586  YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
             V +  +P   +++    GR GR +    ++     +  K   ++  
Sbjct  327  MVCHFNIPKSMESFYQESGRAGRDQLPSRSVLYYGVDDRKKMEYLLR  373


 Score = 36.3 bits (82),  Expect = 1.4, Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 17/35 (49%), Gaps = 0/35 (0%)

Query  29  QAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI  63
           Q E+I  ++ G D      TG GK+  + IP +  
Sbjct  41  QLEAIQAVVSGRDCFCLMPTGGGKSICYQIPALAK  75


>sp|P0C5H7|DCL2_EMENI Dicer-like protein 2 OS=Emericella nidulans 
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) 
OX=227321 GN=dcl2 PE=3 SV=1
Length=1429

 Score = 89.4 bits (220),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 80/486 (16%), Positives = 144/486 (30%), Gaps = 114/486 (23%)

Query  261  APDGYIVKSQHSGNAQVTQTKF---LPNAPKALI--VEPSRELAEQTLNNIKQFKKYIDN  315
              +  +V    SG  Q+   +    L N+   LI  + P+  L  Q    I Q       
Sbjct  27   KGNIIVVMGTGSGKTQIALLRIIHELENSDGKLIWFLAPTVPLCLQQHRVISQH-----I  81

Query  316  PKLRELLIIGGVAAR---DQL--SVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLD  370
            P ++   ++G        +Q     +  G+ ++V TP  L D ++ G + +S++  L+ D
Sbjct  82   PAVKSRTLLGSDKVELWTEQAVWDAVLEGLQVIVSTPAVLHDAMTHGFVRISRLGLLIFD  141

Query  371  EADGLLSQGYSDFI-----------------NRMHNQIPQVTSDGKRLQVI---VCSA-T  409
            EA   + +  ++ I                  R+        S  + LQ I   + S  T
Sbjct  142  EAHHCIRKHPTNMIMRNFYHPALQEYGPGAVPRILGLTASAGSSREGLQTIEMNLNSVCT  201

Query  410  LHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER-----------  458
                  ++L E   H P    +     + +      +       +L ER           
Sbjct  202  TPQAHRQELLE-YTHMPELRRVLYTPLMKEN---ASLWEGSTLQKLLERDNTYCSGQMKT  257

Query  459  --LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK-------GEYAVRAIKEHKMDQA  509
                  HI  +           A+  E+ S A    K        EY V  + +  +   
Sbjct  258  FVCKAVHIFQELGIWAAEYFIRASVEELLSHAYVHSKIDLDYDEREYLVNILSKSPVPDI  317

Query  510  ---------------------------------IIFCRTKIDCDNLEQYFIQQGGGPDKK  536
                                             +IF   +     +           D  
Sbjct  318  DVHSTDPKDFPVSPKFEALISFLMSTEDINFSGLIFVEQRAAVTVMSYLLSTHPSTRD--  375

Query  537  GHQFSCVCLHGDRKPHERKQNL-------------ERFKKGDVRFLICTDVAARGIDIHG  583
              +F      G      RK  L             + F+ G    ++ TDV   GID+  
Sbjct  376  --RFRTGSFIGMSNSTNRKTMLGDLLSAKMQPDTLDDFRYGRKNLIVATDVLKEGIDVSA  433

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK---EKVWYHVCSSRGKGCYN  640
               VI   +P   ++++ R GR  R +    ++ L   +       W        + C  
Sbjct  434  CSVVICYNIPKGFESFIQRRGR-ARRQNSTYSMMLSTEDDGSTLDKWQKFEKIMEEACLE  492

Query  641  TRLKED  646
             R + +
Sbjct  493  DRRRTE  498


>sp|O48534|DEXHD_ARATH DExH-box ATP-dependent RNA helicase DExH13 
OS=Arabidopsis thaliana OX=3702 GN=BRR2B PE=2 SV=1
Length=2172

 Score = 89.8 bits (221),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 60/391 (15%), Positives = 132/391 (34%), Gaps = 55/391 (14%)

Query  302  TLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN-  360
                +    + + +  +    + G  +   Q         I+V TP +  D+++    + 
Sbjct  573  VAEVVDSLSQRLKDFGVTVKELSGDQSLTGQEI---KETQIIVTTPEK-WDIITRKSGDR  628

Query  361  --LSQVRFLVLDEADGLLSQGYSDFINRMH-NQIPQVTSDGKRLQVIVCSATLHS-FDVK  416
                 VR L++DE   LL       +  +    + Q+ S  + ++++  SATL +  DV 
Sbjct  629  TYTQLVRLLIIDEIH-LLDDNRGPVLESIVARTLRQIESTKEHIRLVGLSATLPNCDDVA  687

Query  417  KLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTR  476
                  +    ++  +    VP    ++ + V     R        + +   V  K    
Sbjct  688  SFLRVDLKNGLFIFDRSYRPVPLGQQYIGINVKKPLRRFQLMNDICYQKVVAVAGKHQVL  747

Query  477  PGANSPEMWSEAIKILKG-----EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGG  531
               +S +  ++  + ++      +   R +KE    + I+ C        L         
Sbjct  748  IFVHSRKETAKTARAIRDTAMANDTLSRFLKEDSQSREILKC--------LAGLLKN---  796

Query  532  GPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVIN--  589
               K+   +     H      +R+    +F+ G+++ LI T   A G+++     +I   
Sbjct  797  NDLKELLPYGFAIHHAGLTRTDREIVENQFRWGNLQVLISTATLAWGVNLPAHTVIIKGT  856

Query  590  --VTLPD------EKQNYVHRIGRVGR--AERMGLAISLVATEKEKVWYHVCSSRGKGCY  639
                            + +  IGR GR   ++ G  I +    K + +  + + +     
Sbjct  857  QVYNPERGEWMELSPLDVMQMIGRAGRPQYDQQGEGIIITGYSKLQYYLRLMNEQ-----  911

Query  640  NTRLKEDGGCTIWYNEMQLLSEIEEHLNCTI  670
                           E Q +S++ + LN  I
Sbjct  912  ------------LPIESQFISKLADQLNAEI  930


 Score = 54.8 bits (130),  Expect = 3e-06, Method: Composition-based stats.
 Identities = 57/471 (12%), Positives = 141/471 (30%), Gaps = 91/471 (19%)

Query  212   LGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQH  271
             L   +  P  + +    P   L+N   +  + + +   P +     +       +V +  
Sbjct  1316  LPEKYPPPTELLDLQPLPVMALRNPSYETLYQDFKHFNPVQTQVFTVLYNTSDNVVVAAP  1375

Query  272   SGNAQV---------TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELL  322
             +G+ +             +   +A + + + P   +A++   + ++  K+     LR + 
Sbjct  1376  TGSGKTICAEFAILRNHLEGPDSAMRVVYIAPLEAIAKEQFRDWEK--KFGKGLGLRVVE  1433

Query  323   IIGGVAARDQLSVLENGVDIVVGTPGRLDDLVST--GKLNLSQVRFLVLDEADGLLSQGY  380
             + G       L +LE G  I++ TP + D L      +  + QV   ++DE   +  QG 
Sbjct  1434  LTGETLL--DLKLLEKG-QIIISTPEKWDALSRRWKQRKYIQQVSLFIVDELHLIGGQG-  1489

Query  381   SDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDT  440
                +  + +++                        + +S ++ +    V L    +    
Sbjct  1490  GQVLEVIVSRM------------------------RYISSQVGNKIRIVALSTSLANAKD  1525

Query  441   VHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRA  500
             +   +   +         +    +        +    G +     +    + K  Y    
Sbjct  1526  LGEWIGASSCGVFNFPPNVRPVPL--------EIHIHGVDILSFEARMQAMTKPTYTAIV  1577

Query  501   IKEHKMDQAIIFCRTKIDC--------------------------DNLEQYFIQQGGGPD  534
                     AI+F  T+                             + LE + IQ      
Sbjct  1578  QHAKNKKPAIVFVPTRKHVRLTAVDLIAYSHMDNMKSPDFLLGNLEELEPFLIQICEETL  1637

Query  535   KKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVI------  588
             K+  +     LH      +++   + F+ G ++  + +     G  +     V+      
Sbjct  1638  KETLRHGIGYLHEGLSNLDQEIVTQLFEAGRIQVCVMSSSLCWGTPLKAHLVVVMGTHFY  1697

Query  589   ------NVTLPDEKQNYVHRIGRVGR--AERMGLAISLVATEKEKVWYHVC  631
                   +   P    N +  +GR  R   +  G  +      +++ +    
Sbjct  1698  DGRENSHSDYP--ISNLLQMMGRGSRPLLDDAGKCVIFCHAPRKEYYKKFL  1746


>sp|Q7SDF3|MPH1_NEUCR ATP-dependent DNA helicase mph1 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=mph1 PE=3 SV=1
Length=1168

 Score = 89.0 bits (219),  Expect = 8e-17, Method: Composition-based stats.
 Identities = 55/334 (16%), Positives = 110/334 (33%), Gaps = 39/334 (12%)

Query  406  CS--ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
             S  AT         S K+++F               +      +        E+ GK  
Sbjct  419  FSVIATFAILQSLAHSIKLLNF-------------HGIKPFYNNLAEFRTTEEEKGGKGS  465

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKIL---KGEYAVRAIKEHKMD-------QAIIFC  513
                 V   +N +   +  E W +    L   K EY    +  H MD       +AI+F 
Sbjct  466  KLKRQVLEDENFQKMMDMIEGWMKIDGFLGHPKLEYLCETLVNHFMDAGEGSNTRAIVFS  525

Query  514  RTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTD  573
              +   + + +   +Q           +        K  ++ + +E+FK G    L+ T 
Sbjct  526  EYRDSAEEIVRILNKQPLIKATVFVGQADSKRSEGMKQKQQIETIEKFKNGAHNVLVATS  585

Query  574  VAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
            +   G+DI  V  ++           + R+GR GR  R G  + L+   KE+       +
Sbjct  586  IGEEGLDIGQVDLIVCYDASASPIRMLQRMGRTGRK-RAGNIVLLLMKGKEE--DKFNEA  642

Query  634  RGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQK  693
            +       R+  +G    + ++  L S I          + P+++  V E   + +   +
Sbjct  643  KDNYATMQRMICEGSRFTFRHD--LSSRIVPR------DIRPEVEKKVVEIPLENS---Q  691

Query  694  RAAGGGSYKGHVDILAPTVQELAALEKEAQTSFL  727
                    +    +     ++   +    +T F+
Sbjct  692  NPELPEPKRSAARMRTKPAKKKFNMPDGVETGFI  725


 Score = 43.2 bits (100),  Expect = 0.009, Method: Composition-based stats.
 Identities = 21/89 (24%), Positives = 36/89 (40%), Gaps = 8/89 (9%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVA--ARDQLSVLENGVDIVVG  345
            KA+ V P++ LA Q +            P+ +  L+ G      R+     +    +   
Sbjct  200  KAVFVAPTKPLASQQVQACLSIA---GIPRSQATLLTGETPPVLREDEWATKR---LFFM  253

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADG  374
            TP  L + +S G  +   +  LV+DEA  
Sbjct  254  TPQTLMNDLSKGYADPKSIVLLVIDEAHR  282


>sp|Q06683|IRC3_YEAST Putative ATP-dependent helicase IRC3 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 
GN=IRC3 PE=1 SV=1
Length=689

 Score = 88.3 bits (217),  Expect = 9e-17, Method: Composition-based stats.
 Identities = 58/326 (18%), Positives = 115/326 (35%), Gaps = 40/326 (12%)

Query  281  KFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGV  340
            K      K+LI+   RELA Q    +K+       P L+  + +G      + S      
Sbjct  82   KERQGNFKSLILVHRRELALQATATLKKI-----FPDLKVHIEMGKYDCDIEDS------  130

Query  341  DIVVGTPGRLDDLVST-GKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
            D++V +   +  L+    K + + V  +++DEA   ++  Y      + +     T++ K
Sbjct  131  DVIVAS---VQTLIRRLHKYDTNSVNLIIIDEAHHSVANSY----RSILDHFKASTAETK  183

Query  400  RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
               VI  SAT    D + LS           +  +      +  ++        +     
Sbjct  184  IP-VIGFSATFERADKRALSM----------VMDKIVYHRGILEMIDDKWLCEAKFTSVK  232

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
             ++ +      A D      +S     E  +++   Y     +E  +   ++F   K   
Sbjct  233  IEADLSDVKSTADDFQLAPLSSLMNTKEINEVILKTYL-HKKQEKSLKSTLLFGVDKAHV  291

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
             +L + F   G   D          +  D K  ER   +++FK G+   L+   +   G 
Sbjct  292  QSLHKLFKDNGINTD---------YVTSDTKQIERDNIIQKFKNGETEVLMNCGIFTEGT  342

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGR  605
            D+  +  ++       +   +  IGR
Sbjct  343  DMPNIDCILLCRPTKSRSLLIQMIGR  368


>sp|Q9UBL3|ASH2L_HUMAN Set1/Ash2 histone methyltransferase complex 
subunit ASH2 OS=Homo sapiens OX=9606 GN=ASH2L PE=1 SV=1
Length=628

 Score = 87.9 bits (216),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 85/230 (37%), Gaps = 58/230 (25%)

Query  93   MNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGL---CRVGW  149
            +  +DR     I  D L       K +   RA+ G+ KG  Y+E++  +       R+GW
Sbjct  383  LALHDRAPQLKISDDRLTVVGE--KGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGW  440

Query  150  STMQASLD--LGTDKFGFGFGGT-GKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGH----  202
            S    +L   LG DKF + +    G K H     +Y   +   D +G Y+++ +      
Sbjct  441  SQPLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAK  500

Query  203  ----------------------------------------VKFSKNGKDLGLAFEIPPHM  222
                                                    + F KNG + G+A+     +
Sbjct  501  SLPDTYKDKALIKFKSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAY---KDI  557

Query  223  KNQALFPACVL-KNAELKFNFGEEEFKFPPKDG-FVALSKAPDGYIVKSQ  270
                 FPA  L K+  +  NFG   FK+PPKD  +  +S    G +V+  
Sbjct  558  FEGVYFPAISLYKSCTVSINFG-PCFKYPPKDLTYRPMSDMGWGAVVEHT  606


>sp|Q91X20|ASH2L_MOUSE Set1/Ash2 histone methyltransferase complex 
subunit ASH2 OS=Mus musculus OX=10090 GN=Ash2l PE=1 SV=1
Length=623

 Score = 87.5 bits (215),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 85/230 (37%), Gaps = 58/230 (25%)

Query  93   MNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGL---CRVGW  149
            +  +DR     I  D L       K +   RA+ G+ KG  Y+E++  +       R+GW
Sbjct  378  LALHDRAPQLKISDDRLTVVGE--KGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGW  435

Query  150  STMQASLD--LGTDKFGFGFGGT-GKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGH----  202
            S    +L   LG DKF + +    G K H     +Y   +   D +G Y+++ +      
Sbjct  436  SQPLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAK  495

Query  203  ----------------------------------------VKFSKNGKDLGLAFEIPPHM  222
                                                    + F KNG + G+A+     +
Sbjct  496  SLPDTYKDKALIKFKSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYR---DI  552

Query  223  KNQALFPACVL-KNAELKFNFGEEEFKFPPKDG-FVALSKAPDGYIVKSQ  270
                 FPA  L K+  +  NFG   FK+PPKD  +  +S    G +V+  
Sbjct  553  FEGVYFPAISLYKSCTVSINFG-PSFKYPPKDLTYHPMSDMGWGAVVEHT  601


>sp|P0CR12|MRH4_CRYNJ ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Cryptococcus neoformans var. neoformans serotype D 
(strain JEC21 / ATCC MYA-565) OX=214684 GN=MRH4 PE=3 SV=1
Length=551

 Score = 86.3 bits (212),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 70/381 (18%), Positives = 124/381 (33%), Gaps = 98/381 (26%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLREL----LIIGGVAARDQLSVLENGVDI  342
            P+++I+ P+ EL  Q+    K       N KL        + GGV  +         VD+
Sbjct  139  PRSIILSPTHELTRQSTQFAKILTH---NTKLSVHGMSSTVSGGVGEK------RGSVDV  189

Query  343  VVGTPGRL-------------------------DDLVSTGKLNLSQVRFLVLDEADGLLS  377
            ++GT G L                          D    G +   +V ++V+DEAD LL 
Sbjct  190  LLGTVGSLRRMFGMTRSEEEQEKEDYIRGKRIWQDEQEKGMVEGDKVEWVVIDEADVLLG  249

Query  378  QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSV  437
            + +      + +Q+       K+  +I+C+ATL               P  ++L   +  
Sbjct  250  REFYLDTISVLSQV-------KQANLILCTATLP--------------PFLINLLTTNPF  288

Query  438  PDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYA  497
                   +  ++P   +L  +L    IR      K       +        +        
Sbjct  289  FTKKEPFIHLLSPGLHKLPPKLLTRFIRPSTTGNKH-----GDVAHQVRLTLAEDAKAAK  343

Query  498  VRAIKEHKMDQAIIFCRTKIDCDNLEQYF-----------------IQQGGGPDKKGHQF  540
                +  +  + +IFC +    + +                     ++   G      Q 
Sbjct  344  AEGREGEEPSKIVIFCNSDKQVEQVSGILGTKKIDCLAWTGAGEERLRGRNGSLNDFLQR  403

Query  541  SCVCLHG------DRKPHERKQNLERFKKGDV---------RFLICTDVAARGIDI-HGV  584
              +  H         +P E K   +  K G           R L+ T + +RG+D    V
Sbjct  404  PHLPGHEPPAPLPSLEPRETKPIFQD-KNGTTPNVSQVTRRRVLVTTSLLSRGLDFHPSV  462

Query  585  PYVINVTLPDEKQNYVHRIGR  605
              V  V  P +  ++VHR GR
Sbjct  463  SSVFLVQPPRDVLDFVHRAGR  483


 Score = 48.6 bits (114),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 60/161 (37%), Gaps = 21/161 (13%)

Query  2    AAFSEMGVMPEIAQAVEEM--DWLLPTDI---------QAESIPLILGGGDVLMAAETGS  50
              F + G+   + ++++ +  +    T I         Q +     +G   VL+ AETGS
Sbjct  43   RTFDDFGLEEGLVKSLKGLYGEDGKTTPIETLSFHHFTQPDIASAPIGSQRVLLGAETGS  102

Query  51   GKTGAFSIPVIQIVYETLKDQQEGKKGKTTI---KTGASVLNKWQMNPYDRGSAFAIGSD  107
            GKT ++ IP    ++  LK    G    ++               ++P    +  +    
Sbjct  103  GKTVSYLIP----LFHHLKRTDPGPSVTSSFFADSENTLHPRSIILSPTHELTRQSTQFA  158

Query  108  GLCCQSREVKEWHGCRATK--GLMKGKHYYEVSCHDQGLCR  146
             +   + ++   HG  +T   G+ + +   +V     G  R
Sbjct  159  KILTHNTKL-SVHGMSSTVSGGVGEKRGSVDVLLGTVGSLR  198


>sp|P0CR13|MRH4_CRYNB ATP-dependent RNA helicase MRH4, mitochondrial 
OS=Cryptococcus neoformans var. neoformans serotype D 
(strain B-3501A) OX=283643 GN=MRH4 PE=3 SV=1
Length=551

 Score = 86.3 bits (212),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 70/381 (18%), Positives = 124/381 (33%), Gaps = 98/381 (26%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLREL----LIIGGVAARDQLSVLENGVDI  342
            P+++I+ P+ EL  Q+    K       N KL        + GGV  +         VD+
Sbjct  139  PRSIILSPTHELTRQSTQFAKILTH---NTKLSVHGMSSTVSGGVGEK------RGSVDV  189

Query  343  VVGTPGRL-------------------------DDLVSTGKLNLSQVRFLVLDEADGLLS  377
            ++GT G L                          D    G +   +V ++V+DEAD LL 
Sbjct  190  LLGTVGSLRRMFGMTRSEEEQEKEDYIRGKRIWQDEQEKGMVEGDKVEWVVIDEADVLLG  249

Query  378  QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSV  437
            + +      + +Q+       K+  +I+C+ATL               P  ++L   +  
Sbjct  250  REFYLDTISVLSQV-------KQANLILCTATLP--------------PFLINLLTTNPF  288

Query  438  PDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYA  497
                   +  ++P   +L  +L    IR      K       +        +        
Sbjct  289  FTKKEPFIHLLSPGLHKLPPKLLTRFIRPSTTGNKH-----GDVAHQVRLTLAEDAKAAK  343

Query  498  VRAIKEHKMDQAIIFCRTKIDCDNLEQYF-----------------IQQGGGPDKKGHQF  540
                +  +  + +IFC +    + +                     ++   G      Q 
Sbjct  344  AEGREGEEPSKIVIFCNSDKQVEQVSGILGTKKIDCLAWTGAGEERLRGRNGSLNDFLQR  403

Query  541  SCVCLHG------DRKPHERKQNLERFKKGDV---------RFLICTDVAARGIDI-HGV  584
              +  H         +P E K   +  K G           R L+ T + +RG+D    V
Sbjct  404  PHLPGHEPPAPLPSLEPRETKPIFQD-KNGTTPNVSQVTRRRVLVTTSLLSRGLDFHPSV  462

Query  585  PYVINVTLPDEKQNYVHRIGR  605
              V  V  P +  ++VHR GR
Sbjct  463  SSVFLVQPPRDVLDFVHRAGR  483


 Score = 48.6 bits (114),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 60/161 (37%), Gaps = 21/161 (13%)

Query  2    AAFSEMGVMPEIAQAVEEM--DWLLPTDI---------QAESIPLILGGGDVLMAAETGS  50
              F + G+   + ++++ +  +    T I         Q +     +G   VL+ AETGS
Sbjct  43   RTFDDFGLEEGLVKSLKGLYGEDGKTTPIETLSFHHFTQPDIASAPIGSQRVLLGAETGS  102

Query  51   GKTGAFSIPVIQIVYETLKDQQEGKKGKTTI---KTGASVLNKWQMNPYDRGSAFAIGSD  107
            GKT ++ IP    ++  LK    G    ++               ++P    +  +    
Sbjct  103  GKTVSYLIP----LFHHLKRTDPGPSVTSSFFADSENTLHPRSIILSPTHELTRQSTQFA  158

Query  108  GLCCQSREVKEWHGCRATK--GLMKGKHYYEVSCHDQGLCR  146
             +   + ++   HG  +T   G+ + +   +V     G  R
Sbjct  159  KILTHNTKL-SVHGMSSTVSGGVGEKRGSVDVLLGTVGSLR  198


>sp|D4ACP5|RECQ5_RAT ATP-dependent DNA helicase Q5 OS=Rattus norvegicus 
OX=10116 GN=Recql5 PE=1 SV=1
Length=973

 Score = 86.7 bits (213),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 47/155 (30%), Gaps = 9/155 (6%)

Query  510  IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL  569
            I++CRT+  C+ L      +G          +    H   K  ER Q    + +  V  +
Sbjct  264  IVYCRTREACEQLAIELSSRG---------VNAKAYHAGLKASERTQVQNEWMEEKVPVI  314

Query  570  ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            + T     G+D   V +V +  +      Y    GR GR  +        +         
Sbjct  315  VATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDRDQVSF  374

Query  630  VCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEE  664
            +           R  +            L++  EE
Sbjct  375  LIRKELAKLQEKRGNKPSDKATLLAFDALVTFCEE  409


 Score = 39.7 bits (91),  Expect = 0.10, Method: Composition-based stats.
 Identities = 11/37 (30%), Positives = 21/37 (57%), Gaps = 1/37 (3%)

Query  26  TDIQAESIPLILGG-GDVLMAAETGSGKTGAFSIPVI  61
           T +Q  +I  ++ G  DV +   TG+GK+  + +P +
Sbjct  31  TPLQESAIMAVVKGDKDVFVCMPTGAGKSLCYQLPAV  67


>sp|P18160|SPLA_DICDI Dual specificity protein kinase splA OS=Dictyostelium 
discoideum OX=44689 GN=splA PE=1 SV=3
Length=2410

 Score = 86.7 bits (213),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 34/149 (23%), Positives = 56/149 (38%), Gaps = 18/149 (12%)

Query  121   GCRATKGLMKGKHYYEVSC--HDQGLCRVGWSTMQASLD--LGTDKFGFGFGGTGKKSHN  176
             G RAT+   +G  Y+EV     D+G   +G + ++      +G     +G+     +   
Sbjct  1074  GVRATQPFGEGFCYFEVIIDQLDKGQLSIGLANLEYPTFYHVGWMPRSYGYHNDDGRKFR  1133

Query  177   -------KQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFP  229
                     + ++YG  +   D IGC L      + F+KNG  LG AF           +P
Sbjct  1134  WREEPGVNEGESYGSSYKKGDIIGCGLSFTSREIFFTKNGMYLGTAFSN----VYGVFYP  1189

Query  230   ACVLKNAELKFN--FGEEEFKFPPKDGFV  256
             +       +     FG   FKF      +
Sbjct  1190  SVAFNEPGISITGVFG-PPFKFSQVTLML  1217


 Score = 72.5 bits (176),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 74/200 (37%), Gaps = 25/200 (13%)

Query  89    NKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGC-RATKGLMKGKHYYEVSCHDQGLCRV  147
             N   +N  D+           C          G  ++T+       Y+E+   +    ++
Sbjct  850   NSLTLNIEDKSR---------CSYRLPTSGSKGIAKSTQPFSSSFTYFELFITNGNGDKI  900

Query  148   --GWSTMQASLDL--GTDKFGFGFGGTGKKSHNKQFDN--YGEEFTMHDTIGCYLDIDKG  201
               G +T    +++  G  +  +G+ G G K +    +   YG  F+  D +GC  D    
Sbjct  901   CFGLTTNDHPIEVYPGNYQGSYGYSGDG-KCYFGTNEGRVYGPSFSSGDVVGCGYDSSSK  959

Query  202   HVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF---NFGEEEFKFPPKDGFVA-  257
              + F+KNG  LG+A +    +    L+P   L+N         FG   ++  P+      
Sbjct  960   TLYFTKNGVYLGVAAQKVNLI---GLYPTVGLQNPGESVVINFFGPFSYRGAPEKPSKQS  1016

Query  258   -LSKAPDGYIVKSQHSGNAQ  276
              +  +    I+ S+     +
Sbjct  1017  TIKDSGGSSIIPSEDLIPKE  1036


 Score = 65.5 bits (158),  Expect = 2e-09, Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 47/115 (41%), Gaps = 16/115 (14%)

Query  134   YYEVSCH---DQGLCRVGWSTMQASL--DLGTDKFGFGFGGTGKKSHNKQ-FDNYGEEFT  187
             Y+EV       +G   VG S         +G +   +GF   G+K    +  + YG  F 
Sbjct  1577  YFEVYLEGHDKKGSITVGLSHSTYPFIKHIGREPKSYGFSSEGEKYGGSEIGEPYGPFFF  1636

Query  188   -MHD------TIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKN  235
                D       IGC ++     + F+KNG  LG+AF     + +  L+P+   + 
Sbjct  1637  FDGDSIASSCVIGCGINTSTRDIFFTKNGHYLGVAF---SRVTSDPLYPSISFRG  1688


>sp|Q2VPA6|HELQ_MOUSE Helicase POLQ-like OS=Mus musculus OX=10090 
GN=Helq PE=1 SV=2
Length=1069

 Score = 86.0 bits (211),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 64/323 (20%), Positives = 114/323 (35%), Gaps = 63/323 (20%)

Query  360  NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLS  419
             LS +  +V+DE   ++ +G    I  M   + +V    K  Q+I  SATL+  +V+ L 
Sbjct  412  RLSTLGLVVVDELH-MIGEGSRGAILEM--TLAKVLYTSKTTQIIGMSATLN--NVEDLQ  466

Query  420  EKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH-IRTDDVHAKDNTRPG  478
                                 +         +   L E L  +  I   D  A D     
Sbjct  467  AF-------------------LKAEYYTSQFRPVELKEFLKVNDTIYEVDSQAADGMTFS  507

Query  479  ANSPEMWSEAIKILKGEYAVRAIKEHKMD-QAIIFCRTKIDCDNLEQYFIQ---------  528
                  +SEA+K +  +  V  + E   +   ++FC +K +C+N+ +   +         
Sbjct  508  RLLSYKYSEALKKMDPDRLVALVTEVIPNYSCLVFCPSKKNCENVAEMLCKFLSKDYLNH  567

Query  529  ------------------QGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLI  570
                              +     K+   F     H      ERK   E +  G +  L 
Sbjct  568  REKEKCEVIKSLRNIGNGKVCPVLKRTVPFGIAYHHSGLTSEERKLLEEAYSTGVLCLLT  627

Query  571  CTDVAARGIDIHGVPYVINVTLPDEKQNYVHR------IGRVGRAE--RMGLAISLVATE  622
            CT   A G+++     VI +  P     ++ R      +GR GRA     G +I L+  +
Sbjct  628  CTSTLAAGVNLPA-RRVI-LRAPYVANTFLKRNQYKQMVGRAGRAGIDTAGESILLLQEK  685

Query  623  KEKVWYHVCSSRGKGCYNTRLKE  645
             ++    + S   + C +  ++E
Sbjct  686  DKQQVLELISGPLETCCSHLVEE  708


>sp|Q2HG76|MPH1_CHAGB ATP-dependent DNA helicase MPH1 OS=Chaetomium 
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 
6347 / NRRL 1970) OX=306901 GN=MPH1 PE=3 SV=1
Length=1134

 Score = 86.0 bits (211),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 32/182 (18%), Positives = 68/182 (37%), Gaps = 6/182 (3%)

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
            E+   +AI+F   +   + + +    Q           +        K  ++ + +E+FK
Sbjct  547  ENSNTRAIVFSEYRDSAEEIVRLLNNQPLIRATVFVGQADSKRSEGMKQKQQIETIEKFK  606

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             G    L+ T +   G+DI  V  ++           + R+GR GR  R G  + L+   
Sbjct  607  NGGFNVLVATSIGEEGLDIGQVDLIVCYDASASPIRMLQRMGRTGRK-RAGNIVLLLMKG  665

Query  623  KEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEH-LNCTISQVEPDIKVPV  681
            KE+       ++       +L  +G    + ++  L + I    +   + +   DI +  
Sbjct  666  KEE--EKFLEAKDNYQKMQQLICNGDGFTFRHD--LSTRIVPRDIRPEVDKRHVDIPIEN  721

Query  682  DE  683
             +
Sbjct  722  SQ  723


 Score = 40.5 bits (93),  Expect = 0.069, Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 81/283 (29%), Gaps = 34/283 (12%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR-DQLSVLENGVDIVVGTPG  348
            + V P++ LA Q +            P+ +  L+ G       Q         +   TP 
Sbjct  234  VFVAPTKPLASQQVQACLGIA---GIPRSQATLLTGETPPVLRQGEWESKR--LFFMTPQ  288

Query  349  RLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
             L + +S G  +   +  LV+DEA        Y   +  +           K ++++  +
Sbjct  289  TLMNDLSKGYADPKSIVLLVVDEAHRATGDYAYVKVVEFIRRF-------SKSIRILALT  341

Query  408  ATLHS--FDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHV---VVPVNPKTDRLWERLGKS  462
            AT  S    V+ + + +      +  +    +   VH      V  +P  +    R   S
Sbjct  342  ATPGSTVEGVQDIIDNLGISHVEIRTEESIDIRQYVHSRNIDTVTFDPSDEMHEVRGLFS  401

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
                  V              M      +LK      A      +Q + F          
Sbjct  402  KALKPLVDKLSAQNIYYGRDPMNLTTFGLLKSRQEWLAGPGGHANQGVKF----------  451

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
                +          H    +  HG +  +     L  F+  +
Sbjct  452  --MMMAVFSILQSLAHLIKLLNFHGIKPFY---NGLAEFRSSE  489


>sp|Q58796|Y1401_METJA Probable ATP-dependent helicase MJ1401 
OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 
/ JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ1401 PE=3 
SV=1
Length=808

 Score = 84.8 bits (208),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 69/375 (18%), Positives = 123/375 (33%), Gaps = 68/375 (18%)

Query  257  ALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKA----LIVEPSRELAEQTLNNIKQFKKY  312
             L    D  I+ +  SG   + +   + N  K     L + P   LA Q      +FK+ 
Sbjct  223  GLLNGDDLLIISATSSGKTLIGELAGIKNLIKTGKKFLFLVPLVALANQ---KYLEFKER  279

Query  313  IDNPKLRELLIIG-GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDE  371
             +    +  L +G G   +          DI+VGT   +D L+ T    L  +  +V+DE
Sbjct  280  YEKLGFKVSLRVGLGRIGKKVDVETSLDADIIVGTYEGIDYLIRTK--RLKDIGTVVIDE  337

Query  372  ADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL  431
               L      +   R+   I ++    K  Q I  SAT+   + K+L++++      V  
Sbjct  338  IHSL---NLEERGARLDGLIGRLRFLFKEAQKIYLSATI--GNPKELAKQL--NAKLVLY  390

Query  432  KGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
             G    P  +   ++       +L                                 IK 
Sbjct  391  NGR---PVPLERHIIFCKNDFAKL-------------------------------NIIKE  416

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
            +         K     Q +IF  ++   + L +    +G               HG  + 
Sbjct  417  IVKREWQNISKFGYRGQCLIFTYSRKRAEYLAKALKSKG---------IKAEFYHGGMEY  467

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP-----DEKQNYVHRIGRV  606
             +R++  + F    ++ ++ T   + G+D      VI  +L           +    GR 
Sbjct  468  IKRRKVEDDFANQKIQCVVTTAALSAGVDFPA-STVILESLAMGADWLNPAEFQQMCGRA  526

Query  607  GRAE--RMGLAISLV  619
            GR     +G    LV
Sbjct  527  GRKGMHEIGKVYLLV  541


 Score = 41.7 bits (96),  Expect = 0.028, Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 18/87 (21%)

Query  5    SEMGVMPEIAQAVEEMDWLLPTDIQAESIPL-ILGGGDVLMAAETGSGKTG---------  54
             E+ +  E+ + ++         +Q  S+   +L G D+L+ + T SGKT          
Sbjct  192  DELDIPEELKEIIKSRGIEELLPVQTLSVKAGLLNGDDLLIISATSSGKTLIGELAGIKN  251

Query  55   --------AFSIPVIQIVYETLKDQQE  73
                     F +P++ +  +   + +E
Sbjct  252  LIKTGKKFLFLVPLVALANQKYLEFKE  278


>sp|A4RHU9|DCL2_PYRO7 Dicer-like protein 2 OS=Pyricularia oryzae 
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=DCL2 
PE=3 SV=3
Length=1485

 Score = 85.2 bits (209),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 54/329 (16%), Positives = 110/329 (33%), Gaps = 20/329 (6%)

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVV  446
            M  + P+   +  R+   +   T     +K L  K       +     DS    V   V 
Sbjct  313  MGQRTPKSLRELDRILTKL--DTYTQNQMKALQRKSSSLFRELGQWAVDSYIYNVVEKVS  370

Query  447  PVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM  506
             ++ ++  L   L              N  P   S  + +  +  +K +  +R ++ ++ 
Sbjct  371  NLDARSSWLGGWLDDEQRYLHRAIQGINALPV--SAAIPAPEMTSIKLQVLLRILRGYEG  428

Query  507  DQA-IIFCRTKIDCDNLEQYFI---------QQGGGPDKKGHQFSCVCLHGDRKPHERKQ  556
                I+F + +     L Q            + G       +    + +H   +  +   
Sbjct  429  SPVGIVFVKERATAGILSQLLAIIPDINARYKVGCMVGTSRYMSRKMNIHEVLQQGDDLL  488

Query  557  NLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAI  616
             LE+F+ G +  L+ T V   GID+     VI   +P   ++++ R GR  R  R     
Sbjct  489  ALEKFRSGAINLLVATSVLEEGIDVPVCNLVICFDMPANLKSFIQRRGR-ARM-RESKLH  546

Query  617  SLVATE---KEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQV  673
             ++  +     K W  + ++  +   N   + D    +   +   +  +          V
Sbjct  547  LMIEEDSLVSVKDWGALEAAMKQRYENDMRELDHLAQVEEEDEMDVPPLHSRTTAAKVTV  606

Query  674  EPDIKVPVDEFDGKVTYGQKRAAGGGSYK  702
            + D K  ++ F   VT  Q+       Y 
Sbjct  607  D-DAKGHLEHFCRVVTRSQQYVDASPEYL  634


 Score = 42.8 bits (99),  Expect = 0.015, Method: Composition-based stats.
 Identities = 25/139 (18%), Positives = 50/139 (36%), Gaps = 15/139 (11%)

Query  241  NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE  300
             +  E F+   +   +       G    +     A++ +T   P   +   + P+  L  
Sbjct  67   AYQLEMFQASMQQNIIVSMDTGSGKTQVAVLRIRAELERT---PPEKRVWFLAPTVALCA  123

Query  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN------GVDIVVGTPGRLDDLV  354
            Q    I+         K+   +++ G    D  S ++        V +VV T   L + +
Sbjct  124  QQYEVIR------SQIKVANSIVMTGDDNVDSWSDVQTWDAVLANVRVVVCTYMILFEAL  177

Query  355  STGKLNLSQVRFLVLDEAD  373
            S   + +  +  LV+DEA 
Sbjct  178  SHAFVTMDSISLLVMDEAH  196


>sp|H2KY86|HELQ_CAEEL Helicase POLQ-like OS=Caenorhabditis elegans 
OX=6239 GN=helq-1 PE=3 SV=1
Length=923

 Score = 84.8 bits (208),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 64/374 (17%), Positives = 117/374 (31%), Gaps = 71/374 (19%)

Query  337  ENGVDIVVGTPGRLDDLVSTGKLN--LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV  394
               V + V T  + + L+++      L +V  +V+DE   +   G       +  Q+   
Sbjct  260  RKRVSVYVATIEKANMLINSLITQGQLDRVGMVVVDELHMIGDGGRG----AILEQLLAK  315

Query  395  TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDR  454
                   Q++  SATL + D  K +                     +   V   N +   
Sbjct  316  FLYKGTGQIVGMSATLPNIDDLKFA---------------------LRAFVYSTNFRPVE  354

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
            L E +             D    G                +   + I     + A+IFC 
Sbjct  355  LTEFVKIGQTMHQVSENGDLNPAGDLPTNNLKSTDPDGICQLLAKLI---PKNSAVIFCP  411

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL----------------------------H  546
             K +C+N+     +      ++  +                                  H
Sbjct  412  NKKNCENVAVLIAKTLPAHIRQAKRAESDAFLQSYLSDNDDERMDAVLKQCILSGVAYHH  471

Query  547  GDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP------DEKQNYV  600
                  ERK     F +G +  +  T   A G+++  V  VI +  P        K  Y+
Sbjct  472  SGLTQDERKCVEAAFMEGLIYVVCATSTLAAGVNLP-VRRVI-IKAPMVGRERLGKAQYL  529

Query  601  HRIGRVGRAE--RMGLAISLV-ATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYN--E  655
               GR GRA     G  I+++ A E+E+ +  +  S    C ++   E+   +   +   
Sbjct  530  QMAGRAGRAGFDTKGDCITIIKAGEEERWFREMLKSDIPRCMSSLSSEESMGSFILDCVV  589

Query  656  MQLLSEIEEHLNCT  669
            ++L   IEE +   
Sbjct  590  LKLAENIEEIMTAV  603


>sp|I3XHK1|FANCM_ARATH DEAD-box ATP-dependent RNA helicase FANCM 
OS=Arabidopsis thaliana OX=3702 GN=FANCM PE=2 SV=1
Length=1344

 Score = 84.0 bits (206),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 44/263 (17%), Positives = 86/263 (33%), Gaps = 17/263 (6%)

Query  486  SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKG--HQFSCV  543
             +  K+L+       +K+ K  + IIF   +    ++       G          Q S  
Sbjct  449  PKLSKMLEILVDHFKVKDPKTSRVIIFSNFRGSVRDIMNALSNIGDMVKATEFIGQSSGK  508

Query  544  CLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI  603
             L G +    ++  LE+F+ G    ++ T +   G+DI  V  VI           + R+
Sbjct  509  TLKG-QSQKIQQAVLEKFRAGGFNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRM  567

Query  604  GRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEI-  662
            GR GR    G  + L     EK  Y    + G+               ++   +++  + 
Sbjct  568  GRTGRKNN-GRVVVLACEGSEKNSYMRKQASGRAIKKHMRNGGTNSFNFHPSPRMIPHVY  626

Query  663  ---EEHLNCTISQ-------VEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTV  712
                +H+  +I Q       ++ +       F  K+T  +             + L  ++
Sbjct  627  KPEVQHVEFSIKQFVPRGKKLQEEYATETPAFQKKLTPAETHMLAKYYNNPDEEKLRVSL  686

Query  713  QELAALEKEAQTSFLHLGYLPNQ  735
                    +   S +H      Q
Sbjct  687  IAFPHF--QTLPSKVHKVMHSRQ  707


>sp|O18475|DPOLQ_DROME DNA polymerase theta OS=Drosophila melanogaster 
OX=7227 GN=PolQ PE=1 SV=1
Length=2059

 Score = 84.0 bits (206),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 59/400 (15%), Positives = 125/400 (31%), Gaps = 78/400 (20%)

Query  309  FKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVST--GKLNLSQVRF  366
             +  +     R     GG         L     + + T  + + +V+    +  L  +  
Sbjct  298  MQDLLTPAGYRVEGFYGGYTPPGGFESL----HVAICTIEKANSIVNKLMEQGKLETIGM  353

Query  367  LVLDEADGLLSQGYSDFINRMH-NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF  425
            +V+DE   +  +G    +  +    +     +G ++QVI  SATL +    +L +  +  
Sbjct  354  VVVDEVHLISDKGRGYILELLLAKILYMSRRNGLQIQVITMSATLENV---QLLQSWLDA  410

Query  426  PTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW  485
              ++      ++ + +    V  + +   + +   +  +                  E  
Sbjct  411  ELYITNYRPVALKEMIKVGTVIYDHRLKLVRDVAKQKVL--------------LKGLEND  456

Query  486  SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQ----------------  529
            S+ + +L  E  +           I+FC +K  C+NL                       
Sbjct  457  SDDVALLCIETLLEGC------SVIVFCPSKDWCENLAVQLATAIHVQIKSETVLGQRLR  510

Query  530  ---------------------GGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
                                   G   K   ++C   H      ER      FK G ++ 
Sbjct  511  TNLNPRAIAEVKQQLRDIPTGLDGVMSKAITYACAFHHAGLTTEERDIIEASFKAGALKV  570

Query  569  LICTDVAARGIDIHGVPYVINVTLPD------EKQNYVHRIGRVGRAERM--GLAISLVA  620
            L+ T   + G+++     +I    P           Y   IGR GR  +   G +I +  
Sbjct  571  LVATSTLSSGVNLPARRVLI--RSPLFGGKQMSSLTYRQMIGRAGRMGKDTLGESILICN  628

Query  621  TEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660
                ++   +  S  +   +  L  DG   +    ++++S
Sbjct  629  EINARMGRDLVVSELQPITSC-LDMDGSTHLKRALLEVIS  667


>sp|O59025|HELS_PYRHO ATP-dependent DNA helicase Hel308 OS=Pyrococcus 
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 
/ NBRC 100139 / OT-3) OX=70601 GN=hel308 PE=3 SV=1
Length=715

 Score = 83.6 bits (205),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 74/415 (18%), Positives = 146/415 (35%), Gaps = 46/415 (11%)

Query  249  FPPKDGFV--ALSKAPDGYIVKSQHSGNAQVTQT----KFLPNAPKALIVEPSRELAEQT  302
            +PP+   +   + K  +  I     SG   + +     + L    KA+ + P + LAE+ 
Sbjct  25   YPPQAEALTSGILKGENALIAIPTASGKTLIAEIAIVNRLLKEGGKAVYLVPLKALAEEK  84

Query  303  LNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLS  362
                K +    +   L+  +  G   ++D+      G DI++ T  + D L+  G   + 
Sbjct  85   FKEFKDW----EELGLKVAMATGDYDSKDEWL---GGYDIIIATAEKFDSLLRHGSSWIR  137

Query  363  QVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATL-HSFDVKKLSEK  421
             V+ LV+DE   + S+     +  +  Q+        R Q+I  SAT+ +  ++ +    
Sbjct  138  NVKVLVVDEIHLIGSRDRGATLEFIITQM------LNRAQIIGLSATIGNPEELAEWLNA  191

Query  422  IMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANS  481
             +    W  +K    V             +    WE L    I+     +         +
Sbjct  192  KLIKSDWRPVKLRRGVFYQGFVFWEDGKTEKFNSWEELVYDAIKRSKG-SLVFVNMRRKA  250

Query  482  PEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFS  541
             +   E  K ++     + ++E            K   ++LE+           K  Q  
Sbjct  251  EKTALELSKKIRNFLTKKELREL-----------KELAESLEE---NPTNEKLAKALQGG  296

Query  542  CVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVI-------NVTLPD  594
                H      ER    E FKKG ++ ++ T   + GI+      ++          +  
Sbjct  297  VAFHHAGLGREERVLVEENFKKGLIKVVVATPTLSAGINTPAFRVIVRDTWRYSEFGMER  356

Query  595  EKQNYVHR-IGRVGR--AERMGLAISLVATEK-EKVWYHVCSSRGKGCYNTRLKE  645
                 + + +GR GR   + +G AI +  TE+   V       + +  ++    E
Sbjct  357  IPILEIQQMMGRAGRPKYDEVGEAIIVSTTEEPSTVMERYIKGKPEKLFSQLSNE  411


 Score = 38.2 bits (87),  Expect = 0.37, Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (48%), Gaps = 1/63 (2%)

Query  5   SEMGVMPEIAQAVEEMDWLLPTDIQAESIPL-ILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            E+ +   I + +++         QAE++   IL G + L+A  T SGKT    I ++  
Sbjct  4   EELRIDERIKEVLKKRGISELYPPQAEALTSGILKGENALIAIPTASGKTLIAEIAIVNR  63

Query  64  VYE  66
           + +
Sbjct  64  LLK  66


>sp|Q94545|ASH2_DROME Set1/Ash2 histone methyltransferase complex 
subunit ASH2 OS=Drosophila melanogaster OX=7227 GN=ash2 
PE=1 SV=2
Length=556

 Score = 82.9 bits (203),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 48/217 (22%), Positives = 80/217 (37%), Gaps = 56/217 (26%)

Query  85   ASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGL  144
              V +   +  +DR     I  D L       + +   RAT  + +G  Y+EV+  +   
Sbjct  303  ILVPHSVLLALHDRAPQLKISEDRLAVTGE--RGYCMVRATHSVNRGCWYFEVTIEEMPD  360

Query  145  ---CRVGWSTMQASLD--LGTDKFGFGFGGT-GKKSHNKQFDNYGEEFTMHDTIGCYLDI  198
                R+GW     +L   LG DKFG+ +    G K       +Y + +   DT+G  +++
Sbjct  361  GAATRLGWGREYGNLQAPLGYDKFGYSWRSRKGTKFTESHGKHYSDAYVEGDTLGFLIEL  420

Query  199  DK-------------------------------------------GHVKFSKNGKDLGLA  215
             +                                             ++F KNG+  G+A
Sbjct  421  PEEASLDYLPNTFKDRPLVKFKSHLYYEDKDKITETLKNLHILQGSRIEFFKNGQSQGVA  480

Query  216  FEIPPHMKNQALFPACVL-KNAELKFNFGEEEFKFPP  251
            FE    +   + FPA  + K+A +  NFG   FK+P 
Sbjct  481  FE---DIYAGSYFPAISIHKSATVSVNFG-PAFKYPE  513


>sp|O67837|RECG_AQUAE ATP-dependent DNA helicase RecG OS=Aquifex 
aeolicus (strain VF5) OX=224324 GN=recG PE=3 SV=1
Length=792

 Score = 83.3 bits (204),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 65/439 (15%), Positives = 139/439 (32%), Gaps = 100/439 (23%)

Query  229  PACVLKNAELKFNFGEEEFKF--PPKDGFVALSK------APDGYIVKSQHSGN---AQV  277
            P   +    L+    +  FK     +     + +        +  +     SG    A +
Sbjct  341  PKVNVDEKFLRKAIEKLPFKLTRAQERAIKEILEDLSRDVPMNRLLQGDVGSGKTIVAIL  400

Query  278  TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE  337
            T    + +  +  ++ P+  LA Q   + K+F + + +  +   L+ G +    + SV +
Sbjct  401  TSLAVVKSGYQVAVMVPTEILAHQ---HYKKFSEMLKDYGVNVALLTGSLTPSQKKSVYK  457

Query  338  N----GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ  393
            +     + ++VGT       +   K+    + ++++DE            + +     P 
Sbjct  458  HVKEGNIHVLVGT-----HALIQDKVEFKNLGYVIIDEQHRFGVMQRKLLLEKGKGLYPH  512

Query  394  VTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTD  453
                      +V SAT      + L+  I      +D+   D +P     V+  +  ++ 
Sbjct  513  C---------LVMSAT---PIPRTLALSIYGD---LDISIIDELPPGRKEVITKLYFES-  556

Query  454  RLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFC  513
                                         +   E +K     Y +  + E          
Sbjct  557  -----------------------QKEEVYKKVEEELKKGNKVYVIYPLIEESEK-----L  588

Query  514  RTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTD  573
              K   +  E++         K       + LHG     E+   +E FK+ +   L+ T 
Sbjct  589  NLKAATEEYERW--------KKLFPDRKVLLLHGKMPDKEKLAVMEEFKR-EGDILVSTT  639

Query  574  VAARGIDIHGVPYVINVTLPDEKQNYVHRI---------GRVGRAERMGLAISLVATEKE  624
            V   GID+     ++            HR          GRVGR+++    + +V  E  
Sbjct  640  VIEVGIDVPEATVMVIEDA--------HRFGLSQLHQLRGRVGRSDKEAYCLLVVPDE--  689

Query  625  KVWYHVCSSRGKGCYNTRL  643
                 + + + +     R+
Sbjct  690  -----IKNEKNESLKRLRV  703


>sp|A6ZVS0|MPH1_YEAS7 ATP-dependent DNA helicase MPH1 OS=Saccharomyces 
cerevisiae (strain YJM789) OX=307796 GN=MPH1 PE=3 SV=1
Length=993

 Score = 82.9 bits (203),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 57/320 (18%), Positives = 104/320 (33%), Gaps = 33/320 (10%)

Query  413  FDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL----WERLGKSHIRTDD  468
             ++K   E  +  P +V       V D +          +  +            ++  D
Sbjct  410  KNIKNQCENYLSDPKFVGHGKLQCVRDELMEFFQKRGSDSRVIIFTELRESALEIVKFID  469

Query  469  VHAKDNTRPGAN---------SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
              A D  RP              E+        KG   V  +   + ++ +   RTK   
Sbjct  470  SVANDQIRPHIFIGQARAKEGFDEVKYTRKHAPKGRKKVERLHRQEQEKFLEAERTKRAA  529

Query  520  -DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
             D LE+   + G   + +                 +K+ +  FKKG+   L+CT +   G
Sbjct  530  NDKLERSARRTGSSEEAQI---------SGMNQKMQKEVIHNFKKGEYNVLVCTSIGEEG  580

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGC  638
            +DI  V  +I           + R+GR GR  R G  + L ++ +   +           
Sbjct  581  LDIGEVDLIICYDTTSSPIKNIQRMGRTGRK-RDGKIVLLFSSNESYKFERAMED-----  634

Query  639  YNTRLKEDGGCTIWYNEMQLL--SEIEEHLNCTISQV--EPDIKVPVDEFDGKVTYGQKR  694
            Y+T         I Y +   +   +I    + T+  +  E +I   +++ D  + Y  + 
Sbjct  635  YSTLQALISKQCIDYKKSDRIIPEDIIPECHETLITINDENEIINEMEDVDEVIRYATQC  694

Query  695  AAGGGSYKGHVDILAPTVQE  714
              G              VQE
Sbjct  695  MMGKKVKPKKAITKKKRVQE  714


 Score = 42.8 bits (99),  Expect = 0.012, Method: Composition-based stats.
 Identities = 64/452 (14%), Positives = 142/452 (31%), Gaps = 67/452 (15%)

Query  290  LIVEPSREL-AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            +   P+R L A+Q    +       D   +   L+      R+++   +    +   TP 
Sbjct  134  IFTAPTRPLVAQQIKACLGITGIPSDQTAI---LLDKSRKNREEIWANKR---VFFATPQ  187

Query  349  RLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI----------NRMHNQIPQVTSDG  398
             +++ +  G L+   +  LV+DEA           +           R+        SD 
Sbjct  188  VVENDLKRGVLDPKDIVCLVIDEAHRATGSYAYTNVVKFIDRFNSSYRLLALTATPASDL  247

Query  399  KRLQVIVCSATLHSFDVKK------LSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKT  452
            + +Q +V +  +   +++       +          +++     + D +  + + V P  
Sbjct  248  EGVQEVVNNLDISKIEIRTEESMDIVKYMKKRKKEKIEVPLLLEIEDIIEQLGIAVKPVL  307

Query  453  DRLWER-----------------LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGE  495
             +  E                       I  +    +          ++ +   ++LK  
Sbjct  308  QQAIELGIYEECDPSQINAFKAMQQSQKIIANPTIPEGIKWRNFFILQLLNNVGQMLKRL  367

Query  496  --YAVRAIKEHKMDQAIIFC--------RTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL  545
              Y +R    +  ++   F           KI  +      ++      +          
Sbjct  368  KIYGIRTFFNYFQNKCTEFTTKYNLKKSTNKIAAEFYYHPILKNIKNQCENYLSDPKFVG  427

Query  546  HGDRKPHERKQNLERF--KKGDVRFLICTDVAARGIDIHG-VPYVINVTLPDEKQNYVHR  602
            HG      R + +E F  +  D R +I T++    ++I   +  V N    D+ + ++  
Sbjct  428  HGKL-QCVRDELMEFFQKRGSDSRVIIFTELRESALEIVKFIDSVAN----DQIRPHIF-  481

Query  603  IGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEI  662
            IG+  RA + G        E +    H    R K     R +++        +     ++
Sbjct  482  IGQ-ARA-KEGF------DEVKYTRKHAPKGRKKVERLHRQEQEKFLEAERTKRAANDKL  533

Query  663  EEHLNCTISQVEPDIKVPVDEFDGKVTYGQKR  694
            E     T S  E  I     +   +V +  K+
Sbjct  534  ERSARRTGSSEEAQISGMNQKMQKEVIHNFKK  565


>sp|Q9UT23|MPH1_SCHPO ATP-dependent DNA helicase fml1 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=fml1 
PE=1 SV=2
Length=834

 Score = 82.5 bits (202),  Expect = 7e-15, Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 73/221 (33%), Gaps = 2/221 (1%)

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
            +H     +           S     +   + +        ++ K  + +IF   +   + 
Sbjct  388  NHENYRPLMDDIEILLRDQSFVGHPKLEHLERIVTEYFEKEQTKDTRIMIFVEIRSSAEE  447

Query  522  LEQYFIQQ-GGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
            + ++  +             S V          + + +++F+KG+V  LI T +   G+D
Sbjct  448  ILRFLGKFYPNVRPAIFIGQSAVRKAAGMSQKLQNETVKQFQKGEVNTLIATSIGEEGLD  507

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYN  640
            I  V  +I           + R+GR GR  R G    L+   KE+  +       +   +
Sbjct  508  IGEVDMIICYDASASPIRMLQRMGRTGRK-RKGYIYMLLTRGKEEAKWERAKDAYRTLQD  566

Query  641  TRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPV  681
              +   G      +   L  +     +  + ++  + +  V
Sbjct  567  NIVSGRGLSLSEKSYRILPEKFRPVCDKRVIEIPKENEEVV  607


 Score = 41.3 bits (95),  Expect = 0.034, Method: Composition-based stats.
 Identities = 39/279 (14%), Positives = 101/279 (36%), Gaps = 20/279 (7%)

Query  238  LKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRE  297
            +  +F + +F    K  F  +  A    + K+  +    +   ++ P +   + + P++ 
Sbjct  69   INVSFRDYQFNIVQKALFENVLVALPTGLGKTFIAAVVMMNYLRWFPKS-YIVFMAPTKP  127

Query  298  LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTG  357
            L  Q    ++   K    PK +   + G V    +    ++  ++   TP  + + +  G
Sbjct  128  LVTQ---QMEACYKITGIPKSQTAELSGHVPVTTRNQYYQSR-NVFFVTPQTILNDIKHG  183

Query  358  KLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKK  417
              + +++  LV+DEA           +  + +         K  +++  SAT     ++ 
Sbjct  184  ICDRTRISCLVIDEAHRSTGNYAYVEVVHLLSL------SNKNFRILALSAT-PGNKLEA  236

Query  418  LSEKIMH-FPTWVDLKGEDSV-------PDTVHHVVVPVNPKTDRLWERLGKSHIRTDDV  469
            +   I     + ++++ E+S+          V    V ++ +   + +R           
Sbjct  237  IQNVIDSLHISRIEIRTENSIDISQYVQKKEVDFFPVDLSAEITDIRDRFSSILEPMLQK  296

Query  470  HAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
              K N     N+ ++ S  +   K  +   + +    +Q
Sbjct  297  LNKGNYYRIQNAKDITSFTVVQAKQAFLAMSGQNFPANQ  335


>sp|Q6AYJ1|RECQ1_RAT ATP-dependent DNA helicase Q1 OS=Rattus norvegicus 
OX=10116 GN=Recql PE=1 SV=1
Length=621

 Score = 82.1 bits (201),  Expect = 7e-15, Method: Composition-based stats.
 Identities = 22/106 (21%), Positives = 45/106 (42%), Gaps = 9/106 (8%)

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
             +K    II+C ++ D + +     + G               H + +P +R +   ++ 
Sbjct  311  RYKGKSGIIYCFSQKDSEQVTISLQKLG---------VRAGTYHANMEPEDRTKVHTQWS  361

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR  608
              +++ ++ T     GID   V +VI+ ++    +NY    GR GR
Sbjct  362  ANELQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGR  407


>sp|Q58900|Y1505_METJA Putative ATP-dependent RNA helicase MJ1505 
OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 
2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ1505 
PE=3 SV=2
Length=778

 Score = 82.1 bits (201),  Expect = 8e-15, Method: Composition-based stats.
 Identities = 72/431 (17%), Positives = 139/431 (32%), Gaps = 101/431 (23%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            K LI+ PSR L EQ  N +KQ     ++   + + + G +  + +  + + G  I + TP
Sbjct  59   KVLILAPSRPLVEQHYNRLKQVLNIDED---KIIALTGKIQPKKRAELYKKG-KIFIATP  114

Query  348  GRLDDLVSTGKLNLSQVRFLVL--------------------DEADGL-LSQGYSDFINR  386
              +++ +  G++N+ +   L+                     D+   L L+      I++
Sbjct  115  QVIENDIIAGRINVDEFILLIADEAHHTTGDHAYAFVAKKFKDKCHILGLTASPGSDIDK  174

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVP--------  438
            +      +  +   ++      T    DVK    K+   P  +DL  E            
Sbjct  175  VMEICENLGIEHVEVR------TEDDEDVKPYIAKVKLIPIRIDLPNEFKRALKLINEAL  228

Query  439  -----------------------------------DTVHHVVVPVNPKTDRLWERLGKSH  463
                                               + V + ++ V  +  +L        
Sbjct  229  KERLKILKDAGVINSIADVTKTELIELNNKLFSYDEEVKYELIKVCSEALKLMHAKELLE  288

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI---------------------K  502
             +   V      +      +     +   K   AV  +                     +
Sbjct  289  SQGKSVFLNYINKLSMQRTKSAKSIVNDEKVREAVNLLMKSDVEHPKLGKVVDMVKNILE  348

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
            ++K ++ IIF + +   + +     Q G    +   Q +           E+ + +ERFK
Sbjct  349  KNKDERIIIFAQYRDTVEKIVNLLTQNGIKAIRFIGQANKEGK--GMSQKEQIEAIERFK  406

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA--  620
            K +   L+ T V+  GIDI  V Y+I       +  ++ R GR  R    G    L+A  
Sbjct  407  K-EGSVLVSTSVSEEGIDIPSVNYIIFYEPVPSEIRFIQRRGRAMR-GEGGKVYVLIAKG  464

Query  621  TEKEKVWYHVC  631
            T  E  +    
Sbjct  465  TADEAYYRSAL  475


>sp|P40562|MPH1_YEAST ATP-dependent DNA helicase MPH1 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MPH1 
PE=1 SV=1
Length=993

 Score = 82.5 bits (202),  Expect = 8e-15, Method: Composition-based stats.
 Identities = 57/320 (18%), Positives = 104/320 (33%), Gaps = 33/320 (10%)

Query  413  FDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL---------WERLGKSH  463
             ++K   E  +  P +V       V D +          +  +          E +    
Sbjct  410  KNIKNQCENYLSDPKFVGHGKLQCVRDELMDFFQKRGSDSRVIIFTELRESALEIVKFID  469

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILK----GEYAVRAIKEHKMDQAIIFCRTKIDC  519
               DD          A + E + E     K    G   V  +   + ++ +   RTK   
Sbjct  470  SVADDQIRPHIFIGQARAKEGFDEVKYTRKHAPKGRKKVERLHRQEQEKFLEAERTKRAA  529

Query  520  -DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
             D LE+   + G   + +                 +K+ +  FKKG+   L+CT +   G
Sbjct  530  NDKLERSARRTGSSEEAQI---------SGMNQKMQKEVIHNFKKGEYNVLVCTSIGEEG  580

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGC  638
            +DI  V  +I           + R+GR GR  R G  + L ++ +   +           
Sbjct  581  LDIGEVDLIICYDTTSSPIKNIQRMGRTGRK-RDGKIVLLFSSNESYKFERAMED-----  634

Query  639  YNTRLKEDGGCTIWYNEMQLL--SEIEEHLNCTISQV--EPDIKVPVDEFDGKVTYGQKR  694
            Y+T         I Y +   +   +I    + T+  +  E +I   +++ D  + Y  + 
Sbjct  635  YSTLQALISKQCIDYKKSDRIIPEDIIPECHETLITINDENEIINEMEDVDEVIRYATQC  694

Query  695  AAGGGSYKGHVDILAPTVQE  714
              G              VQE
Sbjct  695  MMGKKVKPKKAITKKKRVQE  714


 Score = 40.5 bits (93),  Expect = 0.061, Method: Composition-based stats.
 Identities = 62/452 (14%), Positives = 137/452 (30%), Gaps = 67/452 (15%)

Query  290  LIVEPSREL-AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            +   P+R L A+Q    +       D   +   L+      R+++   +    +   TP 
Sbjct  134  IFTAPTRPLVAQQIKACLGITGIPSDQTAI---LLDKSRKNREEIWANKR---VFFATPQ  187

Query  349  RLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI----------NRMHNQIPQVTSDG  398
             +++ +  G L+   +  LV+DEA           +           R+        SD 
Sbjct  188  VVENDLKRGVLDPKDIVCLVIDEAHRATGSSAYTNVVKFIDRFNSSYRLLALTATPASDL  247

Query  399  KRLQVIVCSATLHSFDVKK------LSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKT  452
            + +Q +V +  +   +++       +          +++     + D +  + + V P  
Sbjct  248  EGVQEVVNNLDISKIEIRTEESMDIVKYMKKRKKEKIEVPLLLEIEDIIEQLGMAVKPVL  307

Query  453  DRLWER-----------------LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGE  495
             +  E                       I  +    +          ++ +   ++LK  
Sbjct  308  QQAIELGIYEECDPSQINAFKAMQQSQKIIANPTIPEGIKWRNFFILQLLNNVGQMLKRL  367

Query  496  --YAVRAIKEHKMDQAIIFC--------RTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL  545
              Y +R    +  ++   F           KI  +      ++      +          
Sbjct  368  KIYGIRTFFNYFQNKCTEFTTKYNLKKSTNKIAAEFYYHPILKNIKNQCENYLSDPKFVG  427

Query  546  HGDRKPHERKQNLERF--KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH-R  602
            HG      R + ++ F  +  D R +I T+     +    +  V  +    + Q   H  
Sbjct  428  HGKL-QCVRDELMDFFQKRGSDSRVIIFTE-----LRESALEIVKFIDSVADDQIRPHIF  481

Query  603  IGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEI  662
            IG+  RA + G        E +    H    R K     R +++        +     ++
Sbjct  482  IGQ-ARA-KEGF------DEVKYTRKHAPKGRKKVERLHRQEQEKFLEAERTKRAANDKL  533

Query  663  EEHLNCTISQVEPDIKVPVDEFDGKVTYGQKR  694
            E     T S  E  I     +   +V +  K+
Sbjct  534  ERSARRTGSSEEAQISGMNQKMQKEVIHNFKK  565


>sp|A7EFH4|MPH1_SCLS1 ATP-dependent DNA helicase mph1 OS=Sclerotinia 
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 
GN=mph1 PE=3 SV=1
Length=1235

 Score = 82.1 bits (201),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 84/259 (32%), Gaps = 20/259 (8%)

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
            +  +P+  ++ ER+     + D +     T         + +A   L G+          
Sbjct  581  IVNSPEFKKMMERIQGWINKEDFIGHPKLTYLCDTVLNHFLDAGAGLMGD-----NMPPS  635

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHG-DRKPHERKQNLERFKKG  564
              + I+F   +   +++ +   + G                       ++ + + +FK G
Sbjct  636  STRVIVFTEYRDSAEDIARVLNKHGPMIRASVFVGQSDSKRSEGMNQEKQLETIRKFKAG  695

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
             +  ++ T +   G+DI  V  ++           + R+GR GR  R G  + L+   KE
Sbjct  696  GINVIVATSIGEEGLDIGEVDLIVCYDSSSSPIRMLQRMGRTGRK-RAGKIVLLLMRGKE  754

Query  625  KVWYH--------VCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE--IEEHLNCTISQVE  674
            +  Y         +      G   T   +     I       + +  IE  L  T    +
Sbjct  755  EDSYKKSKDNYEQIQRMISSGSRFTFRHDLSARIIPRKVKPEVDKRFIEIPLENTQ---D  811

Query  675  PDIKVPVDEFDGKVTYGQK  693
            P +  P      +    +K
Sbjct  812  PSLPEPKRRAKPRKKLAKK  830


 Score = 40.5 bits (93),  Expect = 0.076, Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 86/265 (32%), Gaps = 26/265 (10%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + + + P++ L  Q +    +       P+    ++ G  +   +         +   TP
Sbjct  310  QIVFMAPTKPLVSQQVKACFEIA---GIPRSSTTMLTGDQSPALRAEEWAEK-RVFFMTP  365

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
              +++ + TG  +  ++  +V+DEA           + +   +        +  +V+  +
Sbjct  366  QTVENDLKTGIADPKKIALIVVDEAHRATGNYAYTKVVQFLRRF------NESFRVLALT  419

Query  408  ATLHS--FDVKKLSEKIMHFPTWVDLKGEDSVPDTVH---HVVVPVNPKTDRLWERLGKS  462
            AT  S    V+++ + +      +  +    + + VH      + ++P  + +  R   S
Sbjct  420  ATPGSSVEAVQEVIDNLEIAEVEIRTEDSIDIKEYVHRRDITEILIDPSDEIIMIRELFS  479

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
                  V+   + +   N   M      +L    A  A    K  Q            ++
Sbjct  480  KALQPLVNLLCSQKAYYNKDPMGLTQYGMLTARKAWMASGAGKSAQM-----------SI  528

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHG  547
            +             GH    +  HG
Sbjct  529  KGMMNALFTVLTSMGHAIKLLNFHG  553


>sp|Q8TDG4|HELQ_HUMAN Helicase POLQ-like OS=Homo sapiens OX=9606 
GN=HELQ PE=1 SV=2
Length=1101

 Score = 82.1 bits (201),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 54/331 (16%), Positives = 116/331 (35%), Gaps = 61/331 (18%)

Query  350  LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSAT  409
            ++ L+ TG+++   +  +V+DE   ++ +G       M   + ++    K  Q+I  SAT
Sbjct  445  VNSLIETGRID--SLGLVVVDELH-MIGEGSRGATLEM--TLAKILYTSKTTQIIGMSAT  499

Query  410  LHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDV  469
            L+  +V+ L +K +                   +      P   + + ++  +    D  
Sbjct  500  LN--NVEDL-QKFLQ----------------AEYYTSQFRPVELKEYLKINDTIYEVDSK  540

Query  470  HAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQ  529
                 T     + +      K+          +       ++FC +K +C+N+ +   + 
Sbjct  541  AENGMTFSRLLNYKYSDTLKKMDPDHLVALVTEVIPNYSCLVFCPSKKNCENVAEMICKF  600

Query  530  ---------------------------GGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
                                            K+   F     H      ERK   E + 
Sbjct  601  LSKEYLKHKEKEKCEVIKNLKNIGNGNLCPVLKRTIPFGVAYHHSGLTSDERKLLEEAYS  660

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHR------IGRVGRAE--RMGL  614
             G +    CT   A G+++     VI +  P   + ++ R      IGR GRA    +G 
Sbjct  661  TGVLCLFTCTSTLAAGVNLPA-RRVI-LRAPYVAKEFLKRNQYKQMIGRAGRAGIDTIGE  718

Query  615  AISLVATEKEKVWYHVCSSRGKGCYNTRLKE  645
            +I ++  + ++    + +   + CY+  ++E
Sbjct  719  SILILQEKDKQQVLELITKPLENCYSHLVQE  749


>sp|Q0W6L1|HELS_METAR ATP-dependent DNA helicase Hel308 OS=Methanocella 
arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50) 
OX=351160 GN=hel308 PE=3 SV=1
Length=740

 Score = 81.7 bits (200),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 68/423 (16%), Positives = 135/423 (32%), Gaps = 84/423 (20%)

Query  246  EFKFPPKDGFV--ALSKAPDGYIVKSQHSGN---AQVTQTKFLPNAPKALIVEPSRELAE  300
               +PP+   +   L    +        SG    A++   K +    KA+ + P + LA 
Sbjct  22   PELYPPQAEAIRQGLLDGKNLLAAIPTASGKTLLAEMAMLKSIAEGGKAIYIVPLKALAS  81

Query  301  QTLNNIKQFKKYIDNP-KLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKL  359
            +  +   +F K    P  ++  +  G   +RD+    +   DI+V T  + D L+  G  
Sbjct  82   EKYDRFLEFSKLPIKPDGVKVGIATGDFDSRDEYLGEK---DIIVATSEKTDSLLRNGAS  138

Query  360  NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLS  419
             LS +  +V DE   + S      +      + ++      LQ++  SAT+   + K L+
Sbjct  139  WLSGLSVVVADEVHLIDSPNRGPTLEV---TLAKLRKINVNLQILALSATI--GNAKALA  193

Query  420  EKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGA  479
             K M            ++ + V +       K  R     G   + +      +      
Sbjct  194  -KWMDAALVQSEWRPTTLKEGVFYGRAITFKKEKRTVNNAGPDEVNSLVADTLE------  246

Query  480  NSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQ  539
                                     +  Q ++F  T+   +++ Q   +      +   +
Sbjct  247  -------------------------EGGQCLVFANTRKSSESIAQKVARSLSKKLQPAEK  281

Query  540  FSCVCL---------------------------HGDRKPHERKQNLERFKKGDVRFLICT  572
                 L                           H   K   R+   + F++  ++ + CT
Sbjct  282  EQLAKLKQDVLRHAETDTCEKLAECVGNGVAFHHAGLKGEHRRIVEDGFRQNILKVIACT  341

Query  573  DVAARGIDIHGVPYVI--------NV-TLPDEKQNYVHRIGRVG--RAERMGLAISLVAT  621
               A G+++     +I        N  ++P     Y    GR G  R +  G A+ +   
Sbjct  342  PTLAAGLNLPARRVIIRDYKRFDVNYGSVPIPVLEYKQMAGRAGRPRLDPYGEAVLIAKN  401

Query  622  EKE  624
              E
Sbjct  402  YDE  404


 Score = 40.1 bits (92),  Expect = 0.085, Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 38/112 (34%), Gaps = 16/112 (14%)

Query  5    SEMGVMPEIAQAVEEMDWLLPTDIQAESIPL-ILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            +E+ +   +               QAE+I   +L G ++L A  T SGKT    + +++ 
Sbjct  4    AELNLPQALKDFYTGSGIPELYPPQAEAIRQGLLDGKNLLAAIPTASGKTLLAEMAMLKS  63

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDR---GSAFAIGSDGLCCQ  112
            + E  K                  L       YDR    S   I  DG+   
Sbjct  64   IAEGGKA------------IYIVPLKALASEKYDRFLEFSKLPIKPDGVKVG  103


>sp|P0DMI1|HELS_ARCFU ATP-dependent DNA helicase Hel308 OS=Archaeoglobus 
fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 
/ NBRC 100126 / VC-16) OX=224325 GN=hel308 PE=1 SV=1
Length=691

 Score = 80.9 bits (198),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 86/482 (18%), Positives = 166/482 (34%), Gaps = 57/482 (12%)

Query  243  GEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKA---LIVEPSRELA  299
            G EE   P  +    +    +  +     +G   + +   +  A K    L V P R LA
Sbjct  22   GIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALA  81

Query  300  EQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKL  359
             +   + K+++K      LR  +  G   +RD+        DI+V T  + D L+     
Sbjct  82   GEKYESFKKWEK----IGLRIGISTGDYESRDEHL---GDCDIIVTTSEKADSLIRNRAS  134

Query  360  NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLS  419
             +  V  LV+DE   LL          +   + ++    K L+VI  SAT    +V +++
Sbjct  135  WIKAVSCLVVDEIH-LLDSEKRGATLEIL--VTKMRRMNKALRVIGLSATAP--NVTEIA  189

Query  420  EKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGA  479
            E +       D +    V   +    + +         R+ K     ++  A++      
Sbjct  190  EWLDADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRV-KFEELVEECVAENGGVLVF  248

Query  480  NSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQ  539
             S    +E   +       + ++   +++AI+        +  E    ++     +KG  
Sbjct  249  ESTRRGAEKTAVKLSAITAKYVENEGLEKAIL--------EENEGEMSRKLAECVRKGAA  300

Query  540  FSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVI--NVTLPDEKQ  597
            F     H      +R+   + F++G+++ ++ T   A G+++     ++           
Sbjct  301  FH----HAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRF----D  352

Query  598  NYVHRI---------GRVGRAE--RMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKED  646
             Y  RI         GR GR      G AI +V     +    +   R       R+   
Sbjct  353  GYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDRE----IAVKRYIFGEPERITSK  408

Query  647  GGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVD  706
             G    +     LS I +    T+ ++E       D F     + Q   +     +  V 
Sbjct  409  LGVE-THLRFHSLSIICDGYAKTLEELE-------DFFADTFFFKQNEISLSYELERVVR  460

Query  707  IL  708
             L
Sbjct  461  QL  462


>sp|Q1RI08|PRIA_RICBR Primosomal protein N' OS=Rickettsia bellii 
(strain RML369-C) OX=336407 GN=priA PE=3 SV=1
Length=648

 Score = 80.6 bits (197),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 70/465 (15%), Positives = 156/465 (34%), Gaps = 53/465 (11%)

Query  229  PACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKS-QHSGNAQVTQ---TKFLP  284
                +K  ++  NF   +     K     L+ +    ++K    SG  +V      ++L 
Sbjct  104  KPIKVKEQKINNNFTLPDLSEEQKQALQMLNDSNKPILIKGVTGSGKTEVYFYLIAEYLA  163

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
               +AL++ P   L+ Q +N  K+  ++  +P +    +           +LE+ V IV+
Sbjct  164  KGKQALVMLPEIALSTQIINRFKE--RFGFDPIIWNSSVTKAQKKMILRGILEDKVKIVI  221

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDF--INRMHNQIPQVTSDGKRLQ  402
            G   R     S+  L    +  +V+DE        Y     +         V S   + Q
Sbjct  222  G--AR-----SSLFLPFKNLGLIVIDEEH---DDSYKQDDGVLYNARDTAIVRSTFDKAQ  271

Query  403  VIVCSAT----------LHSFDVKKLSEKI----MHFPTWVDLKGEDSVPDTVHHVVVPV  448
            +++CSAT          +  + V  LS +     +     +D+  E+ +P   +   + +
Sbjct  272  IVLCSATPSIETMYNANIGKYSVINLSSRYKNAVLPNIEMIDMTKEE-LPKNCYLSNILI  330

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD-  507
                + L  +           +A                    +    + + ++ H    
Sbjct  331  KAIKNNLENKEQTLLFLNRRGYAPLMLCKSCGHKFTCKYCSSWMVVHKSSKKLECHHCGY  390

Query  508  QAIIF--CRTKIDCDNLEQ-----YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLER  560
            Q+ IF  C   ++ ++L         I++         + + +     + P +  Q L +
Sbjct  391  QSKIFNSCPECLEDESLAICGPGIERIEEEAKTLFPNSKIAVISKDHVKNPEKIAQLLHQ  450

Query  561  FKKGDVRFLICTDVAARGIDIHGVPYV--INVTLPDEKQNY---------VHRIG-RVGR  608
             +  ++  LI T +  +G     +  V  ++  L     +          +H++G R GR
Sbjct  451  MENLEIDILIGTQMITKGYHFPNLTLVGVVDADLGSNHADLRSSERAFQLLHQVGGRAGR  510

Query  609  AERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWY  653
                G+           ++ ++   R    +   L+      +  
Sbjct  511  GNSKGMVYLQSYYPDNIIFSYIKDEREDNFFVNELEVRKAADMPP  555


>sp|Q6P4T2|U520_MOUSE U5 small nuclear ribonucleoprotein 200 kDa 
helicase OS=Mus musculus OX=10090 GN=Snrnp200 PE=1 SV=1
Length=2136

 Score = 80.9 bits (198),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 63/398 (16%), Positives = 138/398 (35%), Gaps = 52/398 (13%)

Query  292  VEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAA-RDQLSVLENGVDIVVGTPGRL  350
            + P R L       +  F K +    +    + G     ++++S       I+V TP + 
Sbjct  541  IAPMRSL---VQEMVGSFGKRLATYGITVAELTGDHQLCKEEISA----TQIIVCTPEK-  592

Query  351  DDLVSTG---KLNLSQVRFLVLDEADGLLSQGYSDFINRMH-NQIPQVTSDGKRLQVIVC  406
             D+++     +     VR +VLDE   LL       +  +    I  +    + +++I  
Sbjct  593  WDIITRKGGERTYTQLVRLIVLDEIH-LLHDDRGPVLEALVARAIRNIEMTQEDVRLIGL  651

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSV-PDTVHHVVVPVNPKTDRLWERLGKSHIR  465
            SATL +++   ++  +   P       ++S  P  +    V +  K     + + +  I 
Sbjct  652  SATLPNYE--DVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEK-----KAIKRFQIM  704

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
             + V+ K     G N   ++  + K              + D   +F R       + + 
Sbjct  705  NEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRT  764

Query  526  FIQQGGGPDKKGHQFSCVCLH-GDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
              +Q    + K        +H       +R    + F    ++ L+ T   A G+++   
Sbjct  765  EAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAH  824

Query  585  PYVINVTLPDEKQ----------NYVHRIGRVGR--AERMGLAISLVATEKEKVWYHVCS  632
              +I  T     +          + +  +GR GR   +  G  I + +  + + +  + +
Sbjct  825  TVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLN  884

Query  633  SRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTI  670
             +                    E Q++S++ + LN  I
Sbjct  885  QQ-----------------LPIESQMVSKLPDMLNAEI  905


 Score = 64.8 bits (156),  Expect = 2e-09, Method: Composition-based stats.
 Identities = 63/397 (16%), Positives = 138/397 (35%), Gaps = 39/397 (10%)

Query  212   LGLAFEIPPHMKNQALFPACVLKNAELKFNFGEE-EFKFPPKDGF--VALSKAPDGYIVK  268
             L   +  P  + +    P   L+N+  +  + ++  F  P +        +   + ++  
Sbjct  1291  LPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGA  1350

Query  269   SQHSGN-----AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLI  323
                SG        + +     +  + + + P   LAEQ   +  +  K+ D    + +L+
Sbjct  1351  PTGSGKTICAEFAILRMLLQNSEGRCVYITPMEALAEQVYMDWYE--KFQDRLNKKVVLL  1408

Query  324   IGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTG---KLNLSQVRFLVLDEADGLLSQGY  380
              G  +    L +L  G +I++ TP +  D++S     + N+  +   V+DE   L+    
Sbjct  1409  TGETST--DLKLLGKG-NIIISTPEK-WDILSRRWKQRKNVQNINLFVVDEVH-LIGGEN  1463

Query  381   SDFINRMHNQIPQVTSDGKR--LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVP  438
                +  + +++  ++S  +R    V + S+  ++ DV               L    +  
Sbjct  1464  GPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHW------------LGCSATST  1511

Query  439   DTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAV  498
                H  V PV  +       +  +  R   +          +SP+         + +  +
Sbjct  1512  FNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRL  1571

Query  499   RAIKEHKMDQAII----FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
              AI       A I    F        +L  Y  +      K+        LH    P ER
Sbjct  1572  TAIDILTTCAADIQRQRFLHCTEK--DLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMER  1629

Query  555   KQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT  591
             +   + F  G ++ ++ +     G+++     VI + 
Sbjct  1630  RLVEQLFSSGAIQVVVASRSLCWGMNVAAH-LVIIMD  1665


>sp|F1LNJ2|U520_RAT U5 small nuclear ribonucleoprotein 200 kDa 
helicase OS=Rattus norvegicus OX=10116 GN=Snrnp200 PE=1 SV=1
Length=2139

 Score = 80.9 bits (198),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 63/398 (16%), Positives = 138/398 (35%), Gaps = 52/398 (13%)

Query  292  VEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAA-RDQLSVLENGVDIVVGTPGRL  350
            + P R L       +  F K +    +    + G     ++++S       I+V TP + 
Sbjct  541  IAPMRSL---VQEMVGSFGKRLATYGITVAELTGDHQLCKEEISA----TQIIVCTPEK-  592

Query  351  DDLVSTG---KLNLSQVRFLVLDEADGLLSQGYSDFINRMH-NQIPQVTSDGKRLQVIVC  406
             D+++     +     VR +VLDE   LL       +  +    I  +    + +++I  
Sbjct  593  WDIITRKGGERTYTQLVRLIVLDEIH-LLHDDRGPVLEALVARAIRNIEMTQEDVRLIGL  651

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSV-PDTVHHVVVPVNPKTDRLWERLGKSHIR  465
            SATL +++   ++  +   P       ++S  P  +    V +  K     + + +  I 
Sbjct  652  SATLPNYE--DVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEK-----KAIKRFQIM  704

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
             + V+ K     G N   ++  + K              + D   +F R       + + 
Sbjct  705  NEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRT  764

Query  526  FIQQGGGPDKKGHQFSCVCLH-GDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
              +Q    + K        +H       +R    + F    ++ L+ T   A G+++   
Sbjct  765  EAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAH  824

Query  585  PYVINVTLPDEKQ----------NYVHRIGRVGR--AERMGLAISLVATEKEKVWYHVCS  632
              +I  T     +          + +  +GR GR   +  G  I + +  + + +  + +
Sbjct  825  TVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLN  884

Query  633  SRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTI  670
             +                    E Q++S++ + LN  I
Sbjct  885  QQ-----------------LPIESQMVSKLPDMLNAEI  905


 Score = 64.8 bits (156),  Expect = 2e-09, Method: Composition-based stats.
 Identities = 63/397 (16%), Positives = 138/397 (35%), Gaps = 39/397 (10%)

Query  212   LGLAFEIPPHMKNQALFPACVLKNAELKFNFGEE-EFKFPPKDGF--VALSKAPDGYIVK  268
             L   +  P  + +    P   L+N+  +  + ++  F  P +        +   + ++  
Sbjct  1294  LPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGA  1353

Query  269   SQHSGN-----AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLI  323
                SG        + +     +  + + + P   LAEQ   +  +  K+ D    + +L+
Sbjct  1354  PTGSGKTICAEFAILRMLLQNSEGRCVYITPMEALAEQVYMDWYE--KFQDRLNKKVVLL  1411

Query  324   IGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTG---KLNLSQVRFLVLDEADGLLSQGY  380
              G  +    L +L  G +I++ TP +  D++S     + N+  +   V+DE   L+    
Sbjct  1412  TGETST--DLKLLGKG-NIIISTPEK-WDILSRRWKQRKNVQNINLFVVDEVH-LIGGEN  1466

Query  381   SDFINRMHNQIPQVTSDGKR--LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVP  438
                +  + +++  ++S  +R    V + S+  ++ DV               L    +  
Sbjct  1467  GPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHW------------LGCSATST  1514

Query  439   DTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAV  498
                H  V PV  +       +  +  R   +          +SP+         + +  +
Sbjct  1515  FNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRL  1574

Query  499   RAIKEHKMDQAII----FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
              AI       A I    F        +L  Y  +      K+        LH    P ER
Sbjct  1575  TAIDILTTCAADIQRQRFLHCTEK--DLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMER  1632

Query  555   KQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT  591
             +   + F  G ++ ++ +     G+++     VI + 
Sbjct  1633  RLVEQLFSSGAIQVVVASRSLCWGMNVAAH-LVIIMD  1668


>sp|A6RIS1|MPH1_BOTFB ATP-dependent DNA helicase MPH1 OS=Botryotinia 
fuckeliana (strain B05.10) OX=332648 GN=mph1 PE=3 SV=2
Length=1229

 Score = 80.9 bits (198),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 32/235 (14%), Positives = 82/235 (35%), Gaps = 12/235 (5%)

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
            V  +P   ++ +R+     + + +     T         + +A   L G+          
Sbjct  587  VVNDPDFKKMMDRIQSWINKEEFIGHPKLTHLCDTVLNHFLDAGAGLTGD-----NMPPS  641

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHG-DRKPHERKQNLERFKKG  564
              + I+F   +   +++ +   + G                       ++ + + +FK G
Sbjct  642  STRVIVFTEYRDSAEDIARVLNKHGPMIKASVFVGQSDSKRSEGMNQEKQLETIRKFKAG  701

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE  624
             +  ++ T +   G+DI  V  ++           + R+GR GR  R G  + L+   KE
Sbjct  702  GINVIVATSIGEEGLDIGEVDLIVCYDSSSSPIRMLQRMGRTGRK-RAGKIVLLLMRGKE  760

Query  625  KVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQ---LLSEIEEHLNCTISQVEPD  676
            +  Y       +     R+   G    + +++    +  +++  +     ++ P+
Sbjct  761  EDSYKKSKDNYEQMQ--RMISSGSRFTFRHDLSARIIPRDVKPEVEKRFIEIPPE  813


 Score = 40.1 bits (92),  Expect = 0.093, Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 61/162 (38%), Gaps = 22/162 (14%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE----NGVDIV  343
            + + + P++ L  Q +    +       P+    ++ G     DQ   L     +   + 
Sbjct  316  QIVFMAPTKPLVSQQVKACFEIA---GIPRSSTTMLTG-----DQTPALRAEEWDEKRVF  367

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQ  402
              TP  +++ + TG  +  ++  LV+DEA        Y+  +  +           K  +
Sbjct  368  FMTPQTVENDLKTGIADPKRIALLVVDEAHRATGKYAYTKVVEFLRRF-------NKSFR  420

Query  403  VIVCSATLHS--FDVKKLSEKIMHFPTWVDLKGEDSVPDTVH  442
            V+  +AT  S    V+++ + +      +  +    + + VH
Sbjct  421  VLALTATPGSTVEAVQEVIDNLEIAEVEIRTEESIDIKEYVH  462


>sp|Q9HE09|MFH2_SCHPO Putative ATP-dependent DNA helicase fml2 
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 
GN=fml2 PE=3 SV=1
Length=783

 Score = 80.6 bits (197),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 25/169 (15%), Positives = 58/169 (34%), Gaps = 4/169 (2%)

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHG-DRK  550
            L  E+     + ++  + +IF   +   + +    +                  +     
Sbjct  457  LLKEHFKDTSEGYQNQRVMIFTEFRNTAEYITTTLLAIRPMVRASLFIGQANSAYSTGMN  516

Query  551  PHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAE  610
              ++K+ +++F+ G +  L+ T +   G+DI     +I           + R+GR GR  
Sbjct  517  QMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSSPIRTIQRMGRTGRK-  575

Query  611  RMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLL  659
            + G    L+  + E        S+       ++ E G       ++  L
Sbjct  576  KSGKVFVLLTEDCEDS--KWERSQVSYRRVQKVIESGKKIALKKDVPRL  622


>sp|Q9UT24|BRR2_SCHPO Pre-mRNA-splicing factor brr2 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=brr2 
PE=1 SV=1
Length=2176

 Score = 80.9 bits (198),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 51/353 (14%), Positives = 125/353 (35%), Gaps = 38/353 (11%)

Query  302  TLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNL  361
                +  F K +    +R   + G      Q     +   I+V TP +  D+++    +L
Sbjct  587  VQEMVNNFSKRLTPYNIRVAELTGDSQLTKQQI---SETQIIVTTPEK-WDIITRKANDL  642

Query  362  SQV---RFLVLDEADGLLSQGYSDFINRMHNQIPQ-VTSDGKRLQVIVCSATLHSFDVKK  417
            S V   R +++DE   LL       +  +  +I +      ++++++  SATL ++    
Sbjct  643  SYVNLVRLVIIDEVH-LLHDERGPVLESIVARIFRHQEETLEQVRLVGLSATLPNYT--D  699

Query  418  LSEKIMHFPTW-VDLKGEDSVPDTVHHVVVPVNPKT--DRLWERLGKSHIRTDDVHAKDN  474
            ++  +   P   +        P  +    + +  KT   R+       + +      K+ 
Sbjct  700  VASFLHVDPKKGLFYFDSTYRPCPLKQEFIGITEKTPFKRMQTTNEACYEKVMQHAGKNQ  759

Query  475  TRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPD  534
                 +S +  ++  + ++ +        H +         + D  + E    +     D
Sbjct  760  VLIFVHSRKETAKTARFIRDKALEEETIGHLL---------RSDAASREILRAEADSTSD  810

Query  535  KKGHQ---FSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVIN--  589
            +       +     H   +  +R+ + + F  G ++ L+ T   A G+++     +I   
Sbjct  811  ENLKDLLPYGFAIHHAGMRREDRQTSEDLFADGTIQVLVSTATLAWGVNLPAHTVIIKGT  870

Query  590  --VTLPD------EKQNYVHRIGRVGR--AERMGLAISLVATEKEKVWYHVCS  632
               +           Q+ +  +GR GR   +  G  I + A  + + +  + +
Sbjct  871  QVYSPEKGIWTELSPQDVLQMLGRAGRPQFDTYGEGIIITAHSELQYYLSLMN  923


>sp|Q6F9D2|UVRB_ACIAD UvrABC system protein B OS=Acinetobacter 
baylyi (strain ATCC 33305 / BD413 / ADP1) OX=62977 GN=uvrB 
PE=3 SV=1
Length=675

 Score = 80.2 bits (196),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 57/351 (16%), Positives = 105/351 (30%), Gaps = 51/351 (15%)

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
              P  L D +    L       L++DE+   +       I  M+        +       
Sbjct  324  AAPPTLFDYIPEDAL-------LIIDESHVTV-----PQIGAMYKGDRSRKENLVNYGFR  371

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            + SA         L  + M F  W  +     VP TV     P   + ++  + + +   
Sbjct  372  LPSA---------LDNRPMKFEEWERI-----VPTTVFVSATPAKYELEKSDQIVEQVVR  417

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
             T  +  +   RP     +     I I K             ++ +I   TK   ++L  
Sbjct  418  PTGLIDPEIEIRPVLTQVDDVLSEINIRK----------EMDERVLITTLTKRMAEDLTS  467

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
            Y  + G              LH D    ER + +   + G    L+  ++   G+D+  V
Sbjct  468  YLKEYG---------VKVAYLHSDIDTVERVKIIHELRTGVYDVLVGINLLREGLDMPEV  518

Query  585  PYVINVT-----LPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCY  639
              V  +          +++ +  IGR  R    G AI       + +   +  +  +   
Sbjct  519  SLVAILDADKEGFLRSERSLIQTIGRAAR-NIKGKAILYADRMTDSMQKAIDETERRREK  577

Query  640  NTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTY  690
                 +  G T      Q + EI+         +E  I            +
Sbjct  578  QIEFNKIHGITPRSAVRQKVKEIDTGEVFNDDDIEGKISEQARALSADERH  628


>sp|Q9V0A9|HELS_PYRAB ATP-dependent DNA helicase Hel308 OS=Pyrococcus 
abyssi (strain GE5 / Orsay) OX=272844 GN=hel308 PE=3 
SV=1
Length=715

 Score = 79.8 bits (195),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 70/398 (18%), Positives = 140/398 (35%), Gaps = 48/398 (12%)

Query  249  FPPKDGFV--ALSKAPDGYIVKSQHSGNAQVTQT----KFLPNAPKALIVEPSRELAEQT  302
            +PP+   +   + +  +  +     SG   + +     K L    KA+ + P + LAE+ 
Sbjct  25   YPPQAEALTSGVLEGENLLVAIPTASGKTLIAEIAIANKLLEEGGKAVYIVPLKALAEEK  84

Query  303  LNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLS  362
                K +++      L+  +  G   ++D+        DI++ T  + D L+  G   + 
Sbjct  85   FREFKDWERL----GLKVAMATGDYDSKDEWL---GKYDIIIATAEKFDSLLRHGSSWIR  137

Query  363  QVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATL-HSFDVKKLSEK  421
             V+ LV+DE   + S+     +  +  Q+        R Q+I  SAT+ +  ++ +    
Sbjct  138  DVKMLVIDEIHLIGSRDRGATLEFIITQM------LGRAQIIGLSATIGNPEELAEWLNA  191

Query  422  IMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANS  481
             +    W  +K    V             +    WE L    ++     A         +
Sbjct  192  KLIRSDWRPVKLRKGVFYQGFVFWEDGGSERYNSWEELVYDAVKKGKG-ALVFVNMRRKA  250

Query  482  PEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFS  541
             +   E  K +K     + ++E +                L +   +            S
Sbjct  251  EKTALELAKKVKNYLDRKELRELR---------------ELAESLEENPTNEKLAKALLS  295

Query  542  CVCLH-GDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVI-------NVTLP  593
             V  H       ER    + F+KG ++ ++ T   + GI+      +I          + 
Sbjct  296  GVAFHHAGLGRDERVLVEDNFRKGLIKVVVATPTLSAGINTPAFRVIIRDTWRYSEFGME  355

Query  594  DEKQNYVHR-IGRVG--RAERMGLAISLVATEKEKVWY  628
                  V + +GR G  R + +G AI +V+T +E    
Sbjct  356  RIPVLEVQQMMGRAGRPRYDEVGEAI-IVSTTEEPSLV  392


 Score = 39.3 bits (90),  Expect = 0.13, Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (2%)

Query  6   EMGVMPEIAQAVEEMDWLLPTDIQAESIPL-ILGGGDVLMAAETGSGKTGAFSIPVIQIV  64
           E+ V  +I + + E         QAE++   +L G ++L+A  T SGKT    I +   +
Sbjct  5   ELNVSEKIKEILRERGIEELYPPQAEALTSGVLEGENLLVAIPTASGKTLIAEIAIANKL  64

Query  65  YE  66
            E
Sbjct  65  LE  66


>sp|O73946|HELS_PYRFU ATP-dependent DNA helicase Hel308 OS=Pyrococcus 
furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / 
Vc1) OX=186497 GN=hel308 PE=1 SV=1
Length=720

 Score = 79.8 bits (195),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 95/520 (18%), Positives = 187/520 (36%), Gaps = 63/520 (12%)

Query  243  GEEEFKFPPKDGFV-ALSKAPDGYIVKSQHSGNAQVTQT----KFLPNAPKALIVEPSRE  297
            G E F  P  +     + +  +  I     SG   + +     + L    KA+ + P + 
Sbjct  20   GIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKA  79

Query  298  LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTG  357
            LAE+     + ++K      LR  +  G   ++D+        DI++ T  + D L+  G
Sbjct  80   LAEEKFQEFQDWEK----IGLRVAMATGDYDSKDEWL---GKYDIIIATAEKFDSLLRHG  132

Query  358  KLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKK  417
               +  V+ LV DE   + S+     +  +   +        + Q+I  SAT+   + ++
Sbjct  133  SSWIKDVKILVADEIHLIGSRDRGATLEVILAHM------LGKAQIIGLSATI--GNPEE  184

Query  418  LSEKIMHFPTWVDLKGEDSVPDTVHH--VVVPVNPKTDRL--WERLGKSHIRTDD--VHA  471
            L+E  ++    V       +   V +   V   +   DR   WE L    IR     +  
Sbjct  185  LAE-WLNAELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRKKKGALIF  243

Query  472  KDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGG  531
             +  R         S+ +K L  +  +RA+ E                D+LE+    +  
Sbjct  244  VNMRRKAERVALELSKKVKSLLTKPEIRALNEL--------------ADSLEENPTNEKL  289

Query  532  GPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVI---  588
                +G        H      ER    E F+KG ++ ++ T   + GI+      +I   
Sbjct  290  AKAIRGG---VAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDI  346

Query  589  ----NVTLPDEKQNYVHRI-GRVGR--AERMGLAISLVATEK-EKVWYHVCSSRGKGCYN  640
                +  +       VH++ GR GR   + +G  I +  ++   +V  H    + +  ++
Sbjct  347  WRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFS  406

Query  641  TRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGS  700
                E    +      Q+L+ I      T+ ++   I      +  K TY  +       
Sbjct  407  QLSNESNLRS------QVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNIL  460

Query  701  Y--KGHVDILAPTVQELAALEKEAQTSFLHLGYLPNQLFR  738
            Y    +  I      ++  L    +T+ L++     ++F+
Sbjct  461  YFLLENEFIEISLEDKIRPLSLGIRTAKLYIDPYTAKMFK  500


 Score = 37.4 bits (85),  Expect = 0.51, Method: Composition-based stats.
 Identities = 17/64 (27%), Positives = 28/64 (44%), Gaps = 1/64 (2%)

Query  5   SEMGVMPEIAQAVEEMDWLLPTDIQAESIPL-ILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            E+ V   I   ++E         QAE++   IL G + L++  T SGKT    I ++  
Sbjct  4   DELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHR  63

Query  64  VYET  67
           +   
Sbjct  64  ILTQ  67


>sp|Q6FPQ3|MPH1_CANGA ATP-dependent DNA helicase MPH1 OS=Candida 
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=MPH1 PE=3 SV=1
Length=1052

 Score = 80.2 bits (196),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 51/317 (16%), Positives = 112/317 (35%), Gaps = 23/317 (7%)

Query  415  VKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDN  474
            + K  E+ +  P ++     + + D +       NP   R+           + V   D+
Sbjct  407  ITKECEEKIKDPNFLGHGKLEHLRDELTQFFYE-NPFESRVIIFTELRESALEIVKCIDS  465

Query  475  TRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD-------QAIIFCRTKIDCDNLEQYFI  527
                   P ++    K  +G   V+ +++H          +  +    ++D +  +    
Sbjct  466  MENSEIRPHIFIGQAKGKEGFDEVKFVRKHGPKGRKKSDREKRLEEERRMDEEKKQAALQ  525

Query  528  QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
            ++     ++        L G     ++K+ +++FK G    L+CT +   G+DI  V  +
Sbjct  526  EKLERTSRRTGSSEEAQLSG-MNQKQQKEVIKKFKSGLYNVLVCTSIGEEGLDIGEVDLI  584

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW-------YHVCSSRGKGCYN  640
            I           + R+GR GR  R G  + + ++ +   +       Y++     +    
Sbjct  585  ICYDTTSSPIKNIQRMGRTGRK-RDGRIVLMFSSNEASKFDQSMNDYYNLQKLISQHLVQ  643

Query  641  TR-----LKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRA  695
             R     L  +        +   +SE ++ LN  +   +  I+       GK+   +K  
Sbjct  644  YRKSDRILPPENQEPECEKKFIEVSEEDQELN-NMEDTDDVIRFATQCMLGKIPKTKKGR  702

Query  696  AGGGSYKGHVDILAPTV  712
              G + KG    +   V
Sbjct  703  DKGKAKKGKTFFMPDNV  719


 Score = 37.8 bits (86),  Expect = 0.49, Method: Composition-based stats.
 Identities = 35/224 (16%), Positives = 87/224 (39%), Gaps = 22/224 (10%)

Query  290  LIVEPSREL-AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            +   P+R L A+Q    +       D   +   L+      R+++   +    +   TP 
Sbjct  129  IFTAPTRPLVAQQIKACLGITGIPHDQTAI---LLDKTRKNREEIWANKR---VFFTTPQ  182

Query  349  RLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSA  408
             +++ +  G LN   +  LV+DEA           + +  N+           +++  +A
Sbjct  183  VVENDLKRGVLNPKDIVCLVIDEAHRATGSYAYANLVKFINRF------NSSYRLLALTA  236

Query  409  TLHSFDVKKLSEKIMH-FPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            T  + D++ + E + +   + ++++ E+S+ D V ++   +  + +       ++ +  +
Sbjct  237  T-PATDIEGVQEVVNNLNISKIEIRTEESM-DIVKYMKKKIKDRVN------IQTTVEIE  288

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAII  511
            ++  +          +     I       A+ A K  +  QAII
Sbjct  289  NIVEQLGIAILPVLNQAVELGIYESCPPSAINAFKAMQKSQAII  332


>sp|Q0CEI2|DCL2_ASPTN Dicer-like protein 2 OS=Aspergillus terreus 
(strain NIH 2624 / FGSC A1156) OX=341663 GN=dcl2 PE=3 SV=2
Length=1377

 Score = 79.8 bits (195),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 57/337 (17%), Positives = 110/337 (33%), Gaps = 27/337 (8%)

Query  388  HNQIPQVTSDGKRLQVIVCS-ATLHSFDVKKLSEKIMHFPTWVDLKG---EDSVPDTVHH  443
              Q+ + T DGK LQ  + +  T  +  +++  E+  H   + +L G   +  +  ++  
Sbjct  262  VKQLRRSTFDGKALQKALLTRKTYCNESLRRFVERSCH--IFQELGGWAVDYFIHASIRR  319

Query  444  VVVPVNPKTDRL-WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK  502
            +   ++     L W+   K ++ +   +           PE +  + K L+   +  +  
Sbjct  320  LREKIDDSALMLDWDNEEKEYLASFLSNIATIQSDPPRRPEDFIPSPK-LEALISFLSST  378

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRK----------PH  552
            +      +IF + +     L           D+           G  +            
Sbjct  379  DDSTFSGLIFAKQRATVTVLATLLSVHPLTKDRFRCAAFVGWSGGGNRKDLIGELLSMQM  438

Query  553  ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM  612
            +R   L  F+ G    ++ TDV   GIDI     VI    P   +++V R GR  R +  
Sbjct  439  QRD-TLSEFRSGQKNLIVATDVLEEGIDISACSVVICYDKPANVKSFVQRRGR-ARRKES  496

Query  613  GLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNE--MQLLSEIEEHLNCTI  670
              AI     ++                  +  E   C     E   ++++E  E +  T 
Sbjct  497  TFAILFSTDDELCDLRKWQLLEEAMIEAYQDDERKRCEALALETMAEVVTERFE-VESTG  555

Query  671  SQVEPDIKVPVDEF----DGKVTYGQKRAAGGGSYKG  703
            + +  D  V           +  Y   R      Y G
Sbjct  556  AVLTADTAVARLHHFCSILPQQPYVDNRPELSFEYDG  592


 Score = 49.4 bits (116),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 28/160 (18%), Positives = 58/160 (36%), Gaps = 17/160 (11%)

Query  238  LKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALI--VEPS  295
               N+  E F+   ++  +       G    +           +     P+ LI  + P+
Sbjct  15   CPRNYQTEMFEASLQENIIVAMDTGSGKTHVALLRI-----MNELETRRPQKLIWFLAPT  69

Query  296  RELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR---DQL--SVLENGVDIVVGTPGRL  350
              L  Q  + I +     + P ++   + G        +Q     +   + +VV T   L
Sbjct  70   VALCFQQHDVITK-----NLPAVKSRTLTGQDKVELWTEQAIWDAILKDMQVVVSTHAVL  124

Query  351  DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ  390
             D +S G + +SQ+  L+ DEA   + +  ++ I +    
Sbjct  125  ADAMSNGFVRVSQLGLLIFDEAHHCMRRHPANRIMQDFYH  164


>sp|A1D9Z6|DCL2_NEOFI Dicer-like protein 2 OS=Neosartorya fischeri 
(strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 
/ JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dcl2 PE=3 SV=1
Length=1388

 Score = 79.8 bits (195),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 98/303 (32%), Gaps = 22/303 (7%)

Query  376  LSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH-FPTWVDLKGE  434
            L  G   +I R+       T+  K    ++   T     +++  ++  H F    +   E
Sbjct  254  LDIGDDPYIQRLRKSPLDDTALKKA---LLTGKTYCREQLRRFVDRSRHIFEELGEWAAE  310

Query  435  DSVPDTVHHVVVPV-NPKTDRLWERLGKSHIRT-DDVHAKDNTRPGANSPEMWSEAIKIL  492
              +  ++  +   V N      W+   K+++            +   N P  +  + K  
Sbjct  311  YYIYASIKQLGDRVRNSYMSGDWDEAEKAYLVDFLSKIPASEIQLALNDPGSFRISPKFE  370

Query  493  KGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRK--  550
                 + ++ E +    +IF + +     +           ++          +G     
Sbjct  371  SLLNFLDSLDEREF-SGLIFVKQRATVSAMTSLLSVHPCTRERFRCAAYVGWSNGSASKD  429

Query  551  --------PHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHR  602
                      +R   L+ F+ G    +I TDV   GIDI     V+    P   +++V R
Sbjct  430  ILGDLLNMQLQRD-TLDDFRSGRKNLIIATDVLEEGIDISACSVVVCYDKPPNLKSFVQR  488

Query  603  IGRVGRAERMGLAISLVATE---KEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLL  659
             GR  R ++   AI     +       W  +  +  +   +   +      +   + +++
Sbjct  489  RGR-ARRKQSTFAIMFPTDDASADVSKWQDLEQAMIEAYQDDERQLQSVSALESLDEEVM  547

Query  660  SEI  662
              +
Sbjct  548  ERL  550


 Score = 44.7 bits (104),  Expect = 0.003, Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 61/175 (35%), Gaps = 14/175 (8%)

Query  230  ACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKA  289
            AC   +     N+  E  +   K+  +       G    +     A++      P     
Sbjct  7    ACQGASPYQPRNYQLEMLEASMKENIIVAMDTGSGKTHIAVLRIKAEL---DICPPDKLV  63

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR---DQL--SVLENGVDIVV  344
              + P+  L  Q    I       + P +R   + G        +Q     + NG  ++V
Sbjct  64   WFLAPTVALCIQQHEVIAS-----NLPAVRTRTLTGLDKVELWTEQSIWDAVLNGYRVIV  118

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK  399
             T   L D +S G + +S++  L+ DEA     +  ++ I R     P +T  G 
Sbjct  119  STHAVLADALSHGFVKMSRLALLIFDEAHHCTRRHAANKIMRDFYH-PTLTKSGP  172


>sp|Q2JN87|UVRB_SYNJB UvrABC system protein B OS=Synechococcus 
sp. (strain JA-2-3B'a(2-13)) OX=321332 GN=uvrB PE=3 SV=1
Length=695

 Score = 79.4 bits (194),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 42/312 (13%), Positives = 98/312 (31%), Gaps = 38/312 (12%)

Query  375  LLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE  434
            L+  G+       +  +       K  Q I  SAT  ++++++                 
Sbjct  360  LVDHGFRLPSALDNRPLKAEEFWAKVHQCIFVSATPGNWELEQ-----------------  402

Query  435  DSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG  494
                 +       V       +   G   +    +       P  +      +   +L  
Sbjct  403  -----SEAQFETRVEDGKTLKFYVQGSGRVIEQVIRPTGVVDPEVHVRPTAGQVDDLLGE  457

Query  495  EYA-VRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
             Y  +   +    ++ I+   TK   ++L +Y  ++G              LH +    E
Sbjct  458  IYLRLERSQLGPAERVIVTTLTKRMAEDLTEYLQERG---------IRVRYLHSEITSIE  508

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT-----LPDEKQNYVHRIGRVGR  608
            R + L+ F++G    L+  ++   G+D+  V  V  +          +++ +  IGR  R
Sbjct  509  RIEILQDFREGAFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQMIGRAAR  568

Query  609  AERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNC  668
                G+ +    T    +   +  ++ +     +       T      +  + I   L  
Sbjct  569  -NVRGMVVMYADTMTSSMARAIAETQRRREIQLQYNRQHNITPKPIVKKNSNAILSFLAI  627

Query  669  TISQVEPDIKVP  680
            +    +PD++  
Sbjct  628  SRKLNDPDLEKA  639


>sp|Q8R5F7|IFIH1_MOUSE Interferon-induced helicase C domain-containing 
protein 1 OS=Mus musculus OX=10090 GN=Ifih1 PE=1 SV=1
Length=1025

 Score = 79.4 bits (194),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 44/235 (19%), Positives = 85/235 (36%), Gaps = 20/235 (9%)

Query  452  TDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAII  511
               L        +       K   +  A +P+  +E +  L+     +  +  +  + II
Sbjct  664  KKSLKLDETDEFLMNLFFDNKKMLKKLAENPKYENEKLIKLRNTILEQFTRSEESSRGII  723

Query  512  FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCV-CLHGD----RKPHERKQNLERFKKGDV  566
            F +T+     L Q+ ++     +        +   H          E+K+ + +F+ G++
Sbjct  724  FTKTRQSTYALSQWIMENAKFAEVGVKAHHLIGAGHSSEVKPMTQTEQKEVISKFRTGEI  783

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER--------MGLAIS-  617
              LI T VA  G+DI     VI   L   +   V   GR  RA+          G  ++ 
Sbjct  784  NLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGR-ARADESTYVLVTSSGSGVTE  842

Query  618  --LVATEKEKVWYHVCSSRG---KGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLN  667
              +V   +EK+ Y   +         Y  ++ E    +I   +M++   I +  N
Sbjct  843  REIVNDFREKMMYKAINRVQNMKPEEYAHKILELQVQSILEKKMKVKRSIAKQYN  897


 Score = 37.8 bits (86),  Expect = 0.52, Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 35/103 (34%), Gaps = 4/103 (4%)

Query  27   DIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGAS  86
              Q E     L G ++++   TGSGKT    + V        K +Q  + GK  +     
Sbjct  311  PYQMEVAQPALDGKNIIICLPTGSGKT---RVAVYITKDHLDKKKQASESGKVIVLVNKV  367

Query  87   VLNK-WQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATKGL  128
            +L +      ++          GL   ++    +     +  +
Sbjct  368  MLAEQLFRKEFNPYLKKWYRIIGLSGDTQLKISFPEVVKSYDV  410


>sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa 
helicase OS=Homo sapiens OX=9606 GN=SNRNP200 PE=1 SV=2
Length=2136

 Score = 79.4 bits (194),  Expect = 8e-14, Method: Composition-based stats.
 Identities = 62/398 (16%), Positives = 138/398 (35%), Gaps = 52/398 (13%)

Query  292  VEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAA-RDQLSVLENGVDIVVGTPGRL  350
            + P R L       +  F K +    +    + G     ++++S       I+V TP + 
Sbjct  541  IAPMRSL---VQEMVGSFGKRLATYGITVAELTGDHQLCKEEISA----TQIIVCTPEK-  592

Query  351  DDLVSTG---KLNLSQVRFLVLDEADGLLSQGYSDFINRMH-NQIPQVTSDGKRLQVIVC  406
             D+++     +     VR ++LDE   LL       +  +    I  +    + +++I  
Sbjct  593  WDIITRKGGERTYTQLVRLIILDEIH-LLHDDRGPVLEALVARAIRNIEMTQEDVRLIGL  651

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSV-PDTVHHVVVPVNPKTDRLWERLGKSHIR  465
            SATL +++   ++  +   P       ++S  P  +    V +  K     + + +  I 
Sbjct  652  SATLPNYE--DVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEK-----KAIKRFQIM  704

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
             + V+ K     G N   ++  + K              + D   +F R       + + 
Sbjct  705  NEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRT  764

Query  526  FIQQGGGPDKKGHQFSCVCLH-GDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
              +Q    + K        +H       +R    + F    ++ L+ T   A G+++   
Sbjct  765  EAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAH  824

Query  585  PYVINVTLPDEKQ----------NYVHRIGRVGR--AERMGLAISLVATEKEKVWYHVCS  632
              +I  T     +          + +  +GR GR   +  G  I + +  + + +  + +
Sbjct  825  TVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLN  884

Query  633  SRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTI  670
             +                    E Q++S++ + LN  I
Sbjct  885  QQ-----------------LPIESQMVSKLPDMLNAEI  905


 Score = 64.8 bits (156),  Expect = 3e-09, Method: Composition-based stats.
 Identities = 63/397 (16%), Positives = 138/397 (35%), Gaps = 39/397 (10%)

Query  212   LGLAFEIPPHMKNQALFPACVLKNAELKFNFGEE-EFKFPPKDGF--VALSKAPDGYIVK  268
             L   +  P  + +    P   L+N+  +  + ++  F  P +        +   + ++  
Sbjct  1291  LPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGA  1350

Query  269   SQHSGN-----AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLI  323
                SG        + +     +  + + + P   LAEQ   +  +  K+ D    + +L+
Sbjct  1351  PTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYE--KFQDRLNKKVVLL  1408

Query  324   IGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTG---KLNLSQVRFLVLDEADGLLSQGY  380
              G  +    L +L  G +I++ TP +  D++S     + N+  +   V+DE   L+    
Sbjct  1409  TGETST--DLKLLGKG-NIIISTPEK-WDILSRRWKQRKNVQNINLFVVDEVH-LIGGEN  1463

Query  381   SDFINRMHNQIPQVTSDGKR--LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVP  438
                +  + +++  ++S  +R    V + S+  ++ DV               L    +  
Sbjct  1464  GPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHW------------LGCSATST  1511

Query  439   DTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAV  498
                H  V PV  +       +  +  R   +          +SP+         + +  +
Sbjct  1512  FNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRL  1571

Query  499   RAIKEHKMDQAII----FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
              AI       A I    F        +L  Y  +      K+        LH    P ER
Sbjct  1572  TAIDILTTCAADIQRQRFLHCTEK--DLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMER  1629

Query  555   KQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT  591
             +   + F  G ++ ++ +     G+++     VI + 
Sbjct  1630  RLVEQLFSSGAIQVVVASRSLCWGMNVAAH-LVIIMD  1665


>sp|A7TSV4|MPH1_VANPO ATP-dependent DNA helicase MPH1 OS=Vanderwaltozyma 
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 
GN=MPH1 PE=3 SV=1
Length=1012

 Score = 79.0 bits (193),  Expect = 9e-14, Method: Composition-based stats.
 Identities = 34/219 (16%), Positives = 77/219 (35%), Gaps = 19/219 (9%)

Query  415  VKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDN  474
            + +LS+  ++      L     +   +    + +    D +     + HI       K+N
Sbjct  435  INELSDFFLNS----RLDSRVIIFTELRESALEIVKTIDNMGSSSIRPHIFIGQARGKEN  490

Query  475  TRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPD  534
                    +   +  K       +   K+ ++ +A      + + + +E+   + G   +
Sbjct  491  FDDEGFIRKNKPKGRKKADRLKRLEEDKQKQLSKA-----KQKEQEKVERSSRRTGSSEE  545

Query  535  KKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD  594
             +                ++K+ + +FK GD   L+CT +   G+DI  V  +I      
Sbjct  546  AQI---------SGMNQKQQKEVISKFKNGDYNVLVCTSIGEEGLDIGEVDMIICFDTTG  596

Query  595  EKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
                 + R+GR GR  R G  + L +  + + +      
Sbjct  597  SPIKNIQRMGRTGRK-RDGKILLLFSGNESRKFEKAMED  634


 Score = 38.2 bits (87),  Expect = 0.36, Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 91/270 (34%), Gaps = 19/270 (7%)

Query  244  EEEFKFPPKDGFV-ALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSREL-AEQ  301
            E +F    K  +   L   P G       S    +   ++  N  K +   P+R L A+Q
Sbjct  89   EYQFNIVQKSLYQNTLCAIPTGMGKTFIAS-TVMLNFFRWSKNG-KIIFTAPTRPLVAQQ  146

Query  302  TLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNL  361
                +       D   +   L+      R+ +   +    +   TP  +++ +  G LN 
Sbjct  147  IKACLGITGIPHDQAAI---LLDKSRKNREDIWTQKR---VFFTTPQVIENDLKRGVLNP  200

Query  362  SQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEK  421
              +  LV DEA           + +  ++           +++  +AT    D+  + E 
Sbjct  201  KDIICLVFDEAHRATGSYAYTNVVKFIDRF------NSSYRILALTAT-PGTDIASVQEV  253

Query  422  IMH-FPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480
            + +   + ++++ E+S+ D + ++      K +       +  I    +  K   +    
Sbjct  254  VNNLNISNIEIRTEESM-DIIRYMKKRYKEKIEIGLTTEIEMIIEQLGIAVKPVLQQAVE  312

Query  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAI  510
                       +    A++  ++   +  I
Sbjct  313  LGIYDECHPSQINSFVAMQKSQQIIANPTI  342


>sp|Q55CI8|HELCL_DICDI Activating signal cointegrator 1 complex 
subunit 3-like OS=Dictyostelium discoideum OX=44689 GN=ascc3l 
PE=3 SV=1
Length=2237

 Score = 79.4 bits (194),  Expect = 9e-14, Method: Composition-based stats.
 Identities = 60/411 (15%), Positives = 148/411 (36%), Gaps = 42/411 (10%)

Query  281  KFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAA-RDQLSVLENG  339
            K   +A K + + P + L       +  F K + +  +    + G  +    Q+S     
Sbjct  602  KIRLDAFKIVYIAPMKSL---VQEMVGNFSKRLKSYGIVVNELTGDQSLTNKQISE----  654

Query  340  VDIVVGTPGRLDDLVSTGKLN---LSQVRFLVLDEADGLLSQGYSDFINRMH-NQIPQVT  395
              I+V TP +  D+++    +      V+ +++DE   LL       +  +    +  + 
Sbjct  655  TQIIVTTPEK-WDIITRKSGDRAYTQLVKLIIIDEIH-LLHDERGPVLECIVARTLRMIE  712

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL  455
            S  + ++++  SATL +++   ++  +   P  V        P  +    + ++ +  + 
Sbjct  713  STQQMVRLVGLSATLPNYE--DVATFLRVEPDGVFYFDSSYRPIPLEQQYIGISDRGIKQ  770

Query  456  WERLGK-SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
             +R    +  +  +           +S    ++  K L+     RA+++  +D+ I    
Sbjct  771  LQRCNDITFTKVSERVGDHQILIFVHSRRETAKTGKDLRD----RAVEDQSIDRYIRDPA  826

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
            ++          IQ     D   +       H      +R    + F    ++ LI T  
Sbjct  827  SREILRATASKQIQNAELKDLLPYGIGIH--HAGLSRSDRSLVEDLFGDNRIQVLISTAT  884

Query  575  AARGIDIHGVPYVIN----VTL--------PDEKQNYVHRIGRVGR--AERMGLAISLVA  620
             A G+++     +I                P +    +   GR GR   ++ G  I + +
Sbjct  885  LAWGVNLPAHTVIIKGTQIYNPEKGWCELSPLDVTQML---GRAGRPPFDKEGEGIIITS  941

Query  621  TEKEKVWYHVCSSR--GKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCT  669
              + + +  + +++   +  + +R+ ++    I    +Q + +    L  T
Sbjct  942  QHELQFYLSLLNTQLSIESQFISRIADNLNAEIVLGSIQTVRDAVNWLGYT  992


 Score = 49.0 bits (115),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 78/449 (17%), Positives = 150/449 (33%), Gaps = 57/449 (13%)

Query  263   DGYIVKSQHSG---NAQVTQTKFLPNAPKALI--VEPSRELAEQTLNNIKQFKKYIDNPK  317
             + +I    +SG    A++   +     PKA +  + P ++LA        + K + +   
Sbjct  1415  NAFISAPTNSGKTVCAEIALIRCFKQNPKAKVVYLAPMQDLAS------VRLKDWSNKFG  1468

Query  318   LRE--LLIIGGV--AARDQLSVLENGVDIVVGTPGRLDDLVSTG---KLNLSQVRFLVLD  370
             ++    L++  +   A     +L+   +I+V    +  D++S     +  L  +  L++D
Sbjct  1469  VKSPFGLVVSDLTGDAVTDNKILDRS-NIIVTNCEK-WDILSRKWKQRKALQSINLLIVD  1526

Query  371   EADGLLSQGYSDFINRMHNQIPQV-TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWV  429
             E   L+   Y   +  + +++  + T  G  L+VI  S+++ +   + L   I   P   
Sbjct  1527  ELH-LIGGEYGPTMEIVVSRMRYISTQTGNALRVIALSSSIANA--RDLVLWIGATPQTC  1583

Query  430   DLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAI  489
                  +  P  V + +             L  +     +V    N +     P       
Sbjct  1584  YNFHPNVRPIPVEYQIQGFEF-PHFNARMLAMTKPTVYEVAKNKNQQSIVFVPTRKLSRS  1642

Query  490   KILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDR  549
                     V + ++      ++ C        L  Y         K+  Q      H   
Sbjct  1643  LAADIIANVSSFEDTLTKPYLV-CEE----HVLTPYLEDVDSFALKQSLQMGVAFYHDGL  1697

Query  550   KPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINV-------------TLPDEK  596
                ER+     F+ G +R LI T   A  +D      V+ +               P   
Sbjct  1698  TERERRVVEILFRSGSIRVLIATHSVAWLLDNVFAQLVVIMGTQLYQGKDIRYIDYPIN-  1756

Query  597   QNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEM  656
              + +  IGR G+  + G  +  ++ +  KV   +C +  K  Y   L E         E 
Sbjct  1757  -DILQMIGRAGK--QEGGGV--ISNKVAKVLL-LCHAPKKEYYKMFLNEP-----LPVES  1805

Query  657   QLLSEIEEHLNCTISQVEPDIKVPVDEFD  685
              L   + +  N  I  V   I    D  D
Sbjct  1806  HLDHCLHDQFNSEI--VTKTITKKQDALD  1832


>sp|Q1DKI1|DCL1_COCIM Dicer-like protein 1 OS=Coccidioides immitis 
(strain RS) OX=246410 GN=DCL1 PE=3 SV=3
Length=1500

 Score = 78.6 bits (192),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 67/215 (31%), Gaps = 17/215 (8%)

Query  457  ERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTK  516
            E   +      ++         A  PE+ S  ++ L  E  ++  + H   + I+F   +
Sbjct  395  EAEIQRIREASEIIRSHKFGDPAVRPELLSPKVRRLHHE-LLKYFERHTDTKCIVFTEQR  453

Query  517  IDCDNLEQYFIQQGGGPDKKGHQFSCVC-LHGDRKPHERKQNLE--RFKKGDVRFLICTD  573
                 L   F + G    + G          G      R+Q L    F+KG+V  L  T 
Sbjct  454  HTARILCDLFSRIGTKHLRPGVLIGVRSDASGGMNISFRQQVLAVVSFRKGEVNCLFATS  513

Query  574  VAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAI-----SLVATE------  622
            VA  G+DI     ++   L      Y+   GR  R      A      + V  E      
Sbjct  514  VAEEGLDIPDCNLIVRFDLASTLTQYIQSRGR-ARHMNSTFAHLVERDNFVHRESVNHLQ  572

Query  623  -KEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEM  656
              E++    C S  K         D       N  
Sbjct  573  SSEEIMKRFCISLPKDRILNSDDVDALYESDRNRK  607


>sp|P96130|RECG_TREPA ATP-dependent DNA helicase RecG OS=Treponema 
pallidum (strain Nichols) OX=243276 GN=recG PE=3 SV=1
Length=686

 Score = 78.2 bits (191),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 59/411 (14%), Positives = 131/411 (32%), Gaps = 68/411 (17%)

Query  280  TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE--  337
             K +    +  ++ P+  LA Q  +   +    I    +R   + G V +  +  +LE  
Sbjct  313  LKIIEQGGQVALLAPTELLARQHADTAARLLAPIG---IRLAFLTGNVKSEGRAYLLEAL  369

Query  338  --NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVT  395
                +++VVGT       + +  +    +R +++DE             + +  +  +  
Sbjct  370  VAGEINLVVGT-----HALFSKSVRYHDLRLVIIDEQHRFGVL----QRSALIQKGREGN  420

Query  396  SDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL  455
              GK   +I+ SAT      + L+  +      +D+    S+P     V+  +  KT   
Sbjct  421  PQGKTPHIIMMSAT---PIPRTLALSVFGD---LDISIIKSMPGGRKPVITYIARKTK--  472

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRT  515
                           A+       N  E   +A  I    + +                 
Sbjct  473  ---------------AEKVYEFVGNEIEKGRQAYFIYPRIHDIGLTDL------------  505

Query  516  KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA  575
                  +  Y             +++   +H      E+++ ++ F +G V  L+ T V 
Sbjct  506  -KSVQCMYMYLKNYFA-------RYAVAMIHSKMTEEEQQRIMKYFSEGTVHILVATSVV  557

Query  576  ARGIDIHGVPYVINVTLPDEKQNY----VHRI-GRVGRAERMGLAISLVATEKEKVWYHV  630
              G+D+     ++     +  + +    +H++ GRVGR +       +   E  +     
Sbjct  558  EVGVDVPNANCIVI----EHAERFGLSALHQLRGRVGRGDVQSYCFLMHGDEMTECAKRR  613

Query  631  CSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPV  681
                G       + E+        ++      E+         +P    P+
Sbjct  614  LKIMGSTADGFVIAEEDLKLRGPGDVGDTKNFEQSGYSGFRVADPVRDYPI  664


>sp|Q5RF63|RECQ1_PONAB ATP-dependent DNA helicase Q1 OS=Pongo 
abelii OX=9601 GN=RECQL PE=2 SV=1
Length=649

 Score = 77.9 bits (190),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 9/114 (8%)

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
             +K    II+C ++ D + +       G               H + +P ++     ++ 
Sbjct  311  RYKGQSGIIYCFSQKDSEQVTVSLRNLG---------IHAGAYHANLEPEDKTTVHRKWS  361

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAI  616
              +++ ++ T     GID   V +VI+ ++    +NY    GR GR +     I
Sbjct  362  ANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCI  415


 Score = 35.1 bits (79),  Expect = 2.6, Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 2/52 (4%)

Query  11   PEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             ++ Q V ++       +Q E+I + + G +V +   TG GK   + +P + 
Sbjct  80   KDVLQNVFKL--QKFRPLQLETINVTMAGKEVFLVMPTGGGKGLCYQLPALC  129


>sp|A4RN08|MPH1_PYRO7 ATP-dependent DNA helicase MPH1 OS=Pyricularia 
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 
GN=MPH1 PE=3 SV=1
Length=1102

 Score = 78.6 bits (192),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 56/181 (31%), Gaps = 3/181 (2%)

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHG-DRKPHERKQNLERF  561
            E    + I+F   +   + + +                          K  ++ + + +F
Sbjct  500  EGSSTRVIVFSEYRDSAEEITRVLNVHKPMISASLFVGQADSKKSEGMKQKQQIETIAKF  559

Query  562  KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT  621
            + G    L+ T +   G+DI  V  +I           + R+GR GR  R G    L+  
Sbjct  560  RDGIFNVLVATSIGEEGLDIGQVDLIICYDASSSPIRMLQRMGRTGRK-RAGKITLLLMK  618

Query  622  EKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPV  681
             KE+  Y       +      + E       ++    +   +         VE  I+   
Sbjct  619  GKEEDNYAKAQDNYEKMQKL-ICEGSRFNFRHDLSSRIVPRDVKPEVDKRMVEIPIENTQ  677

Query  682  D  682
            D
Sbjct  678  D  678


 Score = 43.2 bits (100),  Expect = 0.009, Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 83/265 (31%), Gaps = 21/265 (8%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + + V P++ LA Q +            P+ +  L+ G             G  +   TP
Sbjct  185  QMVFVAPTKPLASQQVEACLNIA---GIPRSQSTLLTG-ETKPVLREAEWEGKRLFFMTP  240

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
              L + +S G  +  ++  LV+DEA        Y   I  +           K  +V+  
Sbjct  241  QTLMNDLSKGYADPKRIVLLVVDEAHRATGDYAYVKVIEFIRRF-------SKSFRVLAL  293

Query  407  SATLHSFDVKKLSEKIMHFPT-WVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
            +AT     V+ + + I +     V+++ E+S+   + + V         L        I 
Sbjct  294  TAT-PGSTVEGVQDVIDNLGVSHVEIRTEESI--DIRNYVHSREIDRVVLEPSDEMLRIS  350

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
                 A        +  +++     +    + +   ++  M     F         L+  
Sbjct  351  ELFSQALKPLHSKISQQKIYIGRDPMSITTFGLLKARQDWMKGPGRFAN-----QGLKMM  405

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRK  550
             +          H    +  HG R 
Sbjct  406  LMAIFTILQSLAHAIKLLNYHGIRP  430


>sp|Q9Z129|RECQ1_MOUSE ATP-dependent DNA helicase Q1 OS=Mus musculus 
OX=10090 GN=Recql PE=1 SV=2
Length=648

 Score = 77.9 bits (190),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 47/114 (41%), Gaps = 9/114 (8%)

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
             +K    II+C ++ D + +     + G               H + +P ++ +   ++ 
Sbjct  311  RYKGQSGIIYCFSQKDSEQITISLQKLG---------IHAGTYHANMEPEDKTKVHTQWS  361

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAI  616
              +++ ++ T     GID   V +VI+ ++    +NY    GR GR +     I
Sbjct  362  ANELQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDSRADCI  415


 Score = 37.4 bits (85),  Expect = 0.61, Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query  4    FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
            F   G + ++ Q V ++       +Q E+I + +   D+ +   TG GK+  + +P + 
Sbjct  73   FPWFGKVKDVLQNVFKL--QKFRPLQLETINVTMARKDIFLVMPTGGGKSLCYQLPALC  129


>sp|P84634|DCL4_ARATH Dicer-like protein 4 OS=Arabidopsis thaliana 
OX=3702 GN=DCL4 PE=1 SV=2
Length=1702

 Score = 78.2 bits (191),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 48/271 (18%), Positives = 87/271 (32%), Gaps = 24/271 (9%)

Query  380  YSDFINRMHNQIP---QVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH-------FPTWV  429
            Y + +  +  +     ++  D  + Q ++    L       L   +++           +
Sbjct  353  YENMLEDIKQRCLASLKLLIDTHQTQTLLSMKRLLKRSHDNLIYTLLNLGLWGAIQAAKI  412

Query  430  DLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAI  489
             L  +      V    V  NPK+      L  +        AKD       S     E +
Sbjct  413  QLNSDH----NVQDEPVGKNPKSKICDTYLSMAAEALSSGVAKDENASDLLSLAALKEPL  468

Query  490  KILKGEYAVRAI---KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLH  546
               K    ++ +   +     + IIF    +    L             K      V L 
Sbjct  469  FSRKLVQLIKILSVFRLEPHMKCIIFVNRIVTARTLSCILNNLELLRSWKSDFL--VGLS  526

Query  547  GDRKPHERKQ---NLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI  603
               K   R+     L+RF+  ++  L+ T V   G+DI     VI   LP+   +++   
Sbjct  527  SGLKSMSRRSMETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPETVTSFIQSR  586

Query  604  GRVGRAERMGLAISLVATEKEKVWYHVCSSR  634
            GR  R  +   A  LV +  EK    + + +
Sbjct  587  GR-ARMPQSEYAF-LVDSGNEKEMDLIENFK  615


 Score = 45.9 bits (107),  Expect = 0.002, Method: Composition-based stats.
 Identities = 23/130 (18%), Positives = 44/130 (34%), Gaps = 14/130 (11%)

Query  276  QVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV  335
            ++      P     + + P+  L EQ    I       D+   +  +  GG       S 
Sbjct  160  ELGHLVLSPKKSVCIFLAPTVALVEQQAKVI------ADSVNFKVAIHCGGKRIVKSHSE  213

Query  336  LENGV---DIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP  392
             E  +   +++V TP  L   +    + +  +  L+ DE             N  + +I 
Sbjct  214  WEREIAANEVLVMTPQILLHNLQHCFIKMECISLLIFDECH-----HAQQQSNHPYAEIM  268

Query  393  QVTSDGKRLQ  402
            +V    + LQ
Sbjct  269  KVFYKSESLQ  278


>sp|P46063|RECQ1_HUMAN ATP-dependent DNA helicase Q1 OS=Homo sapiens 
OX=9606 GN=RECQL PE=1 SV=3
Length=649

 Score = 77.5 bits (189),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 9/114 (8%)

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
             +K    II+C ++ D + +       G               H + +P ++     ++ 
Sbjct  311  RYKGQSGIIYCFSQKDSEQVTVSLQNLG---------IHAGAYHANLEPEDKTTVHRKWS  361

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAI  616
              +++ ++ T     GID   V +VI+ ++    +NY    GR GR +     I
Sbjct  362  ANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCI  415


 Score = 38.2 bits (87),  Expect = 0.30, Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 2/52 (4%)

Query  11   PEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             +I Q V ++       +Q E+I + + G +V +   TG GK+  + +P + 
Sbjct  80   KDILQNVFKL--EKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC  129


>sp|O69460|RECG_MYCLE ATP-dependent DNA helicase RecG OS=Mycobacterium 
leprae (strain TN) OX=272631 GN=recG PE=3 SV=2
Length=743

 Score = 77.5 bits (189),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 59/426 (14%), Positives = 129/426 (30%), Gaps = 63/426 (15%)

Query  207  KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYI  266
            ++G+        PP         A +++    +   G+ E +    DG +A ++  +  +
Sbjct  258  RHGELSESGPSAPPRSDGLM---AELMRRLPFELTEGQREVRDVLSDG-LAATRPLNRLL  313

Query  267  VKSQHSGN---AQVTQTKFLPNAPKALIVEPSRELAEQ----TLNNIKQFKKYIDNPK--  317
                 SG    A +   + +    + +++ P+  LA Q      + +             
Sbjct  314  QGEVGSGKTIVAVLAMLQMIDAGYQCVLLAPTEVLAAQHLLSIRDVLGPLGMGCQLGGAE  373

Query  318  --LRELLIIGGVAARDQLSVLEN----GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDE  371
               +  L+ G +    +  V  +       IV+GT       +    +    +  +V+DE
Sbjct  374  NATQVALLTGSMTMAQKKKVRADIFSGQTGIVIGT-----HALLQDAIEFHNLGMVVVDE  428

Query  372  ADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDL  431
                   G         +Q+      G    ++V +AT     V   +  +        L
Sbjct  429  QHRF---GVEQ-----RDQLRTKARTGIMPHLLVMTATPIPRTV---ALTVYGDLEMSTL  477

Query  432  KGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI  491
            +        +   V+ V  K   L     +               P  +  E   +  + 
Sbjct  478  RELPRGRQPITSNVIFVKDKPGWLDRAWQRILEEVAAGRQAYVVAPRIDETEDPQKGGQN  537

Query  492  LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKP  551
             +                          D L             +        +HG    
Sbjct  538  SRPS---------------------ETADGLYARLR------SGELANVRLALMHGRLSA  570

Query  552  HERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI-GRVGRAE  610
             E+   +  F+ G++  L+CT+V   G+D+     ++ +       + +H++ GR+GR  
Sbjct  571  DEKDAAMMAFRAGEIDVLVCTNVIEVGVDVPNATIMLVMDADRFGISQLHQLRGRIGRGT  630

Query  611  RMGLAI  616
               L +
Sbjct  631  HPSLCL  636


>sp|P0DW40|HAMB_BACCE Hachiman protein HamB OS=Bacillus cereus 
OX=1396 GN=hamB PE=3 SV=1
Length=1120

 Score = 77.9 bits (190),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 83/530 (16%), Positives = 172/530 (32%), Gaps = 87/530 (16%)

Query  190  DTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNA-ELKFNFGEEEFK  248
            D I      ++ H+ +    + L L FE         + P  +  +    K+ +     K
Sbjct  206  DLITLADINNEPHMWWY--FRLLYLVFEEYEDGSLWKVVPPLLDNDDISAKYIYANLYKK  263

Query  249  FPPKDGFVALSKAPDGYIVK--------SQHSGN---AQVTQTKFLPNAPKALIV--EPS  295
             P  + F +  +  DG ++K           SG    A+VT  K L  +P AL +   P 
Sbjct  264  KPITEFFKSQRECLDGELLKNDGFVIGMPTSSGKTKVAEVTILKTLTKSPGALCIYIAPY  323

Query  296  RELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVS  355
            R LA              +    +   + GG         L    ++++ TP +   ++ 
Sbjct  324  RSLAN---EVEFSLSSMFEIMGYQVSQLYGGSQTSPLDRQLTKQANVIIVTPEKAKSMLR  380

Query  356  TGKLNLSQVRFLVLDEADGLLSQGYSD--FINRMHNQIPQVTSDGKRLQVIVCSATLHSF  413
            + K    +++ +++DE       G+        +  +  ++       Q+++ SA L + 
Sbjct  381  SNKDLKDRIQLVIIDEGHL---VGFQPRYITGELLIEELKIVLKKNNGQLVLLSAVLPNI  437

Query  414  --------DVKKLSEKIMHFP------------TWVDLKGEDSVPDTVHHVVVPVNPKTD  453
                    +  K     +  P              V++  E   P    + + P   K +
Sbjct  438  SDFSLWIGEDDKAKRMSVWRPSSQRFGELSLARNTVNINWEGETPSYNKNFITPKLVKPE  497

Query  454  RLWERLGKSHIRTDDVHAKDNTRPGANS-------------PEMWSEAIKILKGEYAVRA  500
            R+ +   K   +      K+     A                 M     +I+   +  + 
Sbjct  498  RITKTGRKYAAKYFPADKKEGVAATATKMLDVGSVLIYVGRSNMVLSQARIVSKLFEEKG  557

Query  501  IKEHKMDQAIIFCRTKIDCDNLEQYFI---QQGGGPDKKGHQFSCVCLHGDRKPHE-RKQ  556
            I+    ++           D L        + G   +        +  H  + P E R+ 
Sbjct  558  IEHEWRNKN----------DWLFVELACIEEYGEDSEILSLLKQGIVPHSSKLPTEVRQS  607

Query  557  NLERFKKGDVRFLICTDVAARGIDIHGVPYVI--NVTLPDE----KQNYVHRIGRVGRAE  610
              +     + + +I T    +G++I GV  VI  NV L +       ++ +  GR GRA 
Sbjct  608  IEKLMANDNPKIIIATSTLGQGVNI-GVSTVIVSNVRLDESNTVKVNDFWNIAGRAGRA-  665

Query  611  RMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660
                        + K+ Y +  ++ +     +++       + N  +  S
Sbjct  666  --------FTDTEGKILYAIDRNKSQWSIYNQIQMKEMYFKYRNIEKATS  707


>sp|A0A1D5PRR9|FANCM_CHICK Fanconi anemia group M protein OS=Gallus 
gallus OX=9031 GN=FANCM PE=1 SV=1
Length=2041

 Score = 77.9 bits (190),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 58/155 (37%), Gaps = 3/155 (2%)

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKG-HQFSCVCLHGDRKPHERKQNLERFKKGDV  566
            + +IF   +     + +   +             S           E+ + ++RF++G  
Sbjct  477  RVMIFSSFRDSVQEIAEMLSRFSPVVRVMTFVGHSTGKSTKGFTQKEQLEVVKRFREGGY  536

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
              L+ T V   G+DI  V  +I           V R+GR GR  R G  + ++A  +E+ 
Sbjct  537  NTLVSTCVGEEGLDIGEVDLIICFDAQKSPIRLVQRMGRTGRQ-RQGRVVVILAEGREER  595

Query  627  WYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE  661
             Y+   S  +      +  +     + +  +++ E
Sbjct  596  TYNQSQSNRRSIQKA-ISGNKMLHFYQHSPRMIPE  629


 Score = 37.8 bits (86),  Expect = 0.55, Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 84/231 (36%), Gaps = 23/231 (10%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSV-LENGVDIVVGT  346
            K L + P++ L  Q    ++   + +  P      + GG  A  +  +     V  +  T
Sbjct  129  KVLFLAPTKALVAQ---QMEACAQLMGIPGRDMAEMTGGTQALSRRELWASRRVFFL--T  183

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            P  + + +S G     +V+ LV+DEA   L         ++  ++ + T+  +   V+  
Sbjct  184  PQIMVNDLSRGTCPAVEVKCLVVDEAHKALGNHAY---CQVVKELSRYTTQFR---VLAL  237

Query  407  SATLHSFD--VKKLSEKIMHFPTWVDLKGEDSV-------PDTVHHVVVPVNPKTDRLWE  457
            +AT  S    V+++   ++     ++L  EDS           V  +VVP+  +   +  
Sbjct  238  TATPGSDTKAVQQVVSNLLI--AQIELCSEDSPEIQPYSHERQVEKIVVPLGEELGGIQR  295

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
                          K       + P +    I + + +Y      ++   Q
Sbjct  296  AYIHVLETFAGRLIKLGVLARRDVPSLTKYQIILARDQYRKNPSPQNVGMQ  346


>sp|Q4WA22|DCL2_ASPFU Dicer-like protein 2 OS=Aspergillus fumigatus 
(strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) 
OX=330879 GN=dcl2 PE=3 SV=2
Length=1388

 Score = 77.5 bits (189),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 96/302 (32%), Gaps = 20/302 (7%)

Query  376  LSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH-FPTWVDLKGE  434
            L  G   +I R+        +  K    ++   T     +++  ++  H F    +   E
Sbjct  254  LDIGDDPYIQRLRKSPLDDRALKKA---LLTGKTYCREQLRRFVDRSRHIFEELGEWAAE  310

Query  435  DSVPDTVHHVVVPV-NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK  493
              +  ++  +   V +      W+   K+++         +    A +           +
Sbjct  311  YYIYASIKQLRDRVRDSYMSGDWDEAEKAYLVDFLSKIPTSDIHFALNDPDGFRISPKFE  370

Query  494  GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKK--------GHQFSCVCL  545
                     + +    +IF + ++    +           ++          +  +   +
Sbjct  371  SLLNFLDSSDQREFSGLIFVKQRVTVSAMTSLLSVHPYTRERFRCAAYVGWSNSSASKDI  430

Query  546  HGDR--KPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI  603
             GD      +R   L+ F+ G    +I TDV   GID+     V+    P   ++++ R 
Sbjct  431  LGDLLNMQLQRD-TLDDFRSGRKNLIIATDVLEEGIDLSACSVVVCYDKPPNLKSFIQRR  489

Query  604  GRVGRAERMGLAISLVATE---KEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS  660
            GR  R ++   AI     +       W  +  +  +   +   +      +   + +++ 
Sbjct  490  GR-ARRKQSTFAIMFPTDDTSADVSRWQDLEQAMIEAYQDDERQLQSVSALESLDEEVME  548

Query  661  EI  662
             +
Sbjct  549  RL  550


 Score = 43.2 bits (100),  Expect = 0.011, Method: Composition-based stats.
 Identities = 48/284 (17%), Positives = 98/284 (35%), Gaps = 27/284 (10%)

Query  292  VEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR---DQL--SVLENGVDIVVGT  346
            + P+  L  Q    I       + P +R   + G        DQ     + NG  ++V T
Sbjct  66   LAPTVALCIQQHEVIAS-----NLPAVRTRTLTGLDKVELWTDQSIWDAVLNGYRVIVST  120

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK--RLQVI  404
               L D +S G + +SQ+  L+ DEA     +  ++ I +     P +T  G     +++
Sbjct  121  HAVLADALSHGFVKMSQLALLIFDEAHHCTRRHAANKIMQDFYH-PTLTKSGPAAVPRIM  179

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
              +A   S  V+   ++++      +L      P      ++    +       L +   
Sbjct  180  GLTA---SPVVRSNHQELLM--VESNLDAVCRTPRLHRQELLKFTHRPH-----LQQIWY  229

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAI--IFCRTKIDCDNL  522
               D     +      +     E + I    Y  R  K    D+A+       K  C   
Sbjct  230  TPTDPAGFRSASLTLGALYHAWENLDIGDDPYIQRLRKSPLDDRALKKALLTGKTYCREQ  289

Query  523  EQYFIQQGGGPDKKGHQFSC-VCLHGDRKPHERKQNLERFKKGD  565
             + F+ +     ++  +++    ++   K   R +  + +  GD
Sbjct  290  LRRFVDRSRHIFEELGEWAAEYYIYASIKQL-RDRVRDSYMSGD  332


>sp|Q31ES7|UVRB_HYDCU UvrABC system protein B OS=Hydrogenovibrio 
crunogenus (strain DSM 25203 / XCL-2) OX=317025 GN=uvrB PE=3 
SV=1
Length=678

 Score = 77.1 bits (188),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 62/385 (16%), Positives = 117/385 (30%), Gaps = 65/385 (17%)

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            P  L D +    L         +DE+           I ++        S  + L     
Sbjct  322  PPTLLDYLPKNALMF-------IDESHV--------TIPQIGGMYKGDRSRKENLVTFGF  366

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
                      +L   + + P   D + E  +P T+     P   + +   + + +    T
Sbjct  367  ----------RLPSAMDNRPMRFD-EFEKIMPQTIFVSATPGKYEAEHESKIVEQVVRPT  415

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
              +      RP     +     I+          ++  K ++ ++   TK   +NL +Y 
Sbjct  416  GLLDPVLEVRPALTQVDDLLGEIR----------LRVEKEERVLVTTLTKRMAENLTEYL  465

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
             +         H      LH D    ER + +   + G+   L+  ++   G+DI  V  
Sbjct  466  EE---------HNVRVRYLHSDIDTVERIEIIRDLRLGEFDVLVGINLLREGLDIPEVSL  516

Query  587  VINVT-----LPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
            V  +           ++ +  IGR  R    G AI             +  S  K    T
Sbjct  517  VAILDADKEGFLRSDRSLIQTIGRAAR-NVAGKAILYAD--------KITKSMQKAIDET  567

Query  642  RLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSY  701
              +      I +N  Q ++   + LN  I+ +  D         G      K A   G Y
Sbjct  568  ERRRAK--QIQHNTEQGITP--QKLNKKITDILEDSPYAPK--PGASAAKLKAAEADGEY  621

Query  702  KGHVDILAPTVQELAALEKEAQTSF  726
                       Q  + +++  +  +
Sbjct  622  SPQEMQRMTPAQLASEIKRMEKQMY  646


>sp|Q54900|RECG_STRPN ATP-dependent DNA helicase RecG OS=Streptococcus 
pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) 
OX=170187 GN=recG PE=3 SV=2
Length=671

 Score = 76.7 bits (187),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 65/417 (16%), Positives = 140/417 (34%), Gaps = 88/417 (21%)

Query  233  LKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN-------  285
            ++ + L  N+ +E+          AL++A +  + +      +     + L         
Sbjct  228  VQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSGKT  287

Query  286  -------------APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQ  332
                           +A ++ P+  LAEQ   +++        P L+  L+ G + A ++
Sbjct  288  VVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNL-----FPNLKLALLTGSLKAAEK  342

Query  333  LSVLEN----GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH  388
              VLE       D+++GT       +    +  +++  +++DE       G      R+ 
Sbjct  343  REVLETIAKGEADLIIGT-----HALIQDGVEYARLGLIIIDEQHRF---GVGQ--RRIL  392

Query  389  NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV  448
             +       G    V++ +AT     +   +   M      D+   D +P     +V   
Sbjct  393  RE------KGDNPDVLMMTATPIPRTLAITAFGDM------DVSIIDQMPAGRKPIVTRW  440

Query  449  NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ  508
                    E+L +     +    K +     +     SEA+ +         +  H   +
Sbjct  441  IKH-----EQLPQVLTWLEGEIQKGSQVYVISPLIEESEALDLKNAIALSEELTTHFAGK  495

Query  509  AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRF  568
            A                                   LHG  K  E+ Q ++ FK+     
Sbjct  496  A-------------------------------EVALLHGRMKSDEKDQIMQDFKERKTDI  524

Query  569  LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI-GRVGRAERMGLAISLVATEKE  624
            L+ T V   G+++     +I +       + +H++ GRVGR ++   A+ +   + +
Sbjct  525  LVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPKTD  581


>sp|Q2JRR3|UVRB_SYNJA UvrABC system protein B OS=Synechococcus 
sp. (strain JA-3-3Ab) OX=321327 GN=uvrB PE=3 SV=1
Length=695

 Score = 76.7 bits (187),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 42/320 (13%), Positives = 108/320 (34%), Gaps = 45/320 (14%)

Query  375  LLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE  434
            L+  G+       +  +       K  Q +  SAT  ++++++   +             
Sbjct  360  LVDHGFRLPSALDNRPLKAEEFWAKVHQCVFVSATPGNWELEQSGAQF------------  407

Query  435  DSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG  494
            ++V +    +   V      + + +  + +   +VH +              +   +L  
Sbjct  408  ETVVENGKTLKFYVPGTGRVIEQVIRPTGVVDPEVHVRPTAG----------QVEDLLGE  457

Query  495  EYA-VRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
             Y  +   ++   ++ I+   TK   ++L +Y  ++G              LH +    E
Sbjct  458  IYLRLERSQQGLPERVIVTTLTKRMAEDLTEYLQERG---------IRVRYLHSEISSIE  508

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT-----LPDEKQNYVHRIGRVGR  608
            R + L+ F++G    L+  ++   G+D+  V  V  +          +++ +  IGR  R
Sbjct  509  RIEILQDFREGAFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQMIGRAAR  568

Query  609  AERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNC  668
                G  +    T    +   +  ++ +     +       T           I+++ N 
Sbjct  569  -NVRGTVVMYADTLTGSMARAIAETQRRREIQLQYNRQHNITPKPI-------IKKNSNA  620

Query  669  TISQVEPDIKVPVDEFDGKV  688
             +S +    K+   + +   
Sbjct  621  ILSFLAISRKLNSQDLEKAF  640


>sp|A6UN73|HELS_METVS ATP-dependent DNA helicase Hel308 OS=Methanococcus 
vannielii (strain ATCC 35089 / DSM 1224 / JCM 13029 
/ OCM 148 / SB) OX=406327 GN=hel308 PE=3 SV=1
Length=751

 Score = 76.7 bits (187),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 58/386 (15%), Positives = 119/386 (31%), Gaps = 84/386 (22%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            K L + P + LA        +F+K  +   ++  + IG    ++ LS      +I++ T 
Sbjct  68   KGLFIVPLKALA---SEKFDEFQKKYETYGIKVGMSIGDYDTKEDLSK----YNIIITTS  120

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
             +LD L+      +  +   V+DE   +        +  +  ++  +       Q++  S
Sbjct  121  EKLDSLMRHNIEWIKDLSLAVIDEIHLIGDNERGGTLEVILTKLKNI-----NAQIVGLS  175

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT+               P  +       +                R  E     ++  +
Sbjct  176  ATV-------------GNPEEIANWLNAKLV-----------TDEWRPVELKKGIYLENE  211

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC------DN  521
              +  +      +   + S +   L         ++      +IFC +K +        N
Sbjct  212  INYINNQDSQKKSFKAVKSISRNNLTDLIVDSVNEK---GSCLIFCNSKRNAVGESKKHN  268

Query  522  LEQYFIQQGGGPDKKGHQFSCVCL---------------------HGDRKPHERKQNLER  560
            L +Y  +          +     L                     H       RK   E 
Sbjct  269  LTKYLSKAELNDLNSISEEILSILETPTETCKSLSECIKKGVAFHHAGLTYQHRKAVEEG  328

Query  561  FKKGDVRFLICTDVAARGIDIH----GVPYVINV------TLPDEKQNYVHR-IGRVGRA  609
            F+   ++ + CT   + G+++      +  +          +P  +   +H+ IGR GR 
Sbjct  329  FRNKVIKVICCTPTLSAGLNLPCRRAIIRDIRRYSQNGLIDIPKLE---IHQCIGRAGRP  385

Query  610  ERM--GLAISLVATEK--EKVWYHVC  631
                 G  I L   EK  EK +  + 
Sbjct  386  GLDPYGEGIILAKNEKDVEKAFLALT  411


>sp|P51979|HFM1_YEAST ATP-dependent DNA helicase MER3 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=HFM1 
PE=1 SV=3
Length=1187

 Score = 77.1 bits (188),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 72/517 (14%), Positives = 170/517 (33%), Gaps = 69/517 (13%)

Query  151  TMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEF-TMHDTIGCYLDIDKGHVK-FSKN  208
            + Q S  +G            +    + F+  G +F    D      D  +   K F  +
Sbjct  37   SRQPSFKVGLSYNSLLDDCDDENETEEIFEGRGLQFFDKDDNFSITADDTQVTSKLFDHD  96

Query  209  GKDLG-LAFEIPPHMKNQALFPACV---LKNAELKFNFGEEEFKFPPKDGFVALSKAPDG  264
             +       + P  +  +     C+   +     +  F   EF     + F ++ ++ + 
Sbjct  97   LEQTPDEEAKKPKKVTIRKSAKKCLSTTILPDSFRGVFKFTEFNKMQSEAFPSIYESNEN  156

Query  265  YIVKSQHSGNAQ----------VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYID  314
             I+ S                 + +T    N  K + + P++ L  +   N      +  
Sbjct  157  CIISSPTGSGKTVLFELAILRLIKETNSDTNNTKIIYIAPTKSLCYEMYKNW-----FPS  211

Query  315  NPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQ----VRFLVLD  370
               L   ++    +  +         +I++ TP +  DL++    + S+    V+ +++D
Sbjct  212  FVNLSVGMLTSDTSFLETEKA--KKCNIIITTPEK-WDLLTRRWSDYSRLFELVKLVLVD  268

Query  371  EADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF---PT  427
            E    + +     +  +  ++  +    + ++ +  SAT+   +++ L+  +      P 
Sbjct  269  EIHT-IKEKRGASLEVILTRMNTMC---QNIRFVALSATVP--NIEDLALWLKTNNELPA  322

Query  428  WVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSE  487
             +    E      +   V   +      +++    + +  ++  K       N P +   
Sbjct  323  NILSFDESYRQVQLTKFVYGYSFNCKNDFQKDAIYNSKLIEIIEKH----ADNRPVLIFC  378

Query  488  AIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHG  547
              +      A   +  H      IF ++K  C++              +  Q      H 
Sbjct  379  PTRASTISTAKFLLNNH------IFSKSKKRCNH------NPSDKILNECMQQGIAFHHA  426

Query  548  DRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVI------NVTLPDEKQNY--  599
                 +R    + F  G +  L  T   A G+++     +I      N     E Q Y  
Sbjct  427  GISLEDRTAVEKEFLAGSINILCSTSTLAVGVNLPAYLVIIKGTKSWN---SSEIQEYSD  483

Query  600  ---VHRIGRVGR--AERMGLAISLVATEKEKVWYHVC  631
               +  IGR GR   E  G A+ +  ++ ++ + ++ 
Sbjct  484  LDVLQMIGRAGRPQFETHGCAVIMTDSKMKQTYENLI  520


 Score = 43.2 bits (100),  Expect = 0.011, Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 37/69 (54%), Gaps = 5/69 (7%)

Query  9    VMPEIAQAVEEM-DWLLPTDIQAESIP-LILGGGDVLMAAETGSGKTGAFSIPVIQIVYE  66
            ++P+  + V +  ++      Q+E+ P +     + ++++ TGSGKT  F + +++++ E
Sbjct  125  ILPDSFRGVFKFTEFNKM---QSEAFPSIYESNENCIISSPTGSGKTVLFELAILRLIKE  181

Query  67   TLKDQQEGK  75
            T  D    K
Sbjct  182  TNSDTNNTK  190


>sp|F4HYD7|RANBM_ARATH Ran-binding protein M homolog OS=Arabidopsis 
thaliana OX=3702 GN=RANBPM PE=1 SV=1
Length=467

 Score = 75.9 bits (185),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 32/129 (25%), Positives = 60/129 (47%), Gaps = 13/129 (10%)

Query  133  HYYEVSCHDQGL---CRVGWSTMQASL--DLGTDKFGFGFGGTGKKSHNKQF--DNYGEE  185
            +Y+E+   D G+     +G++     +    G +    G+ G     +  Q   + +G +
Sbjct  100  YYFEIFVKDSGIKGQIAIGFTKESFKMRRQPGWEVNSCGYHGDDGYLYRGQGKGEPFGPK  159

Query  186  FTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVL--KNAELKFNFG  243
            FT  D +G  ++       F+KNG  +G   +IP  ++   LFP   +  +N E+  NFG
Sbjct  160  FTKDDAVGGGINYASQEFFFTKNGTIVG---KIPKDIRGH-LFPTVAVHSQNEEVLVNFG  215

Query  244  EEEFKFPPK  252
            +++F F  K
Sbjct  216  KKKFAFDIK  224


>sp|D0KN27|HELS_SACS9 ATP-dependent DNA helicase Hel308 OS=Saccharolobus 
solfataricus (strain 98/2) OX=555311 GN=hel308 PE=1 
SV=1
Length=715

 Score = 76.3 bits (186),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 63/364 (17%), Positives = 129/364 (35%), Gaps = 47/364 (13%)

Query  283  LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDI  342
            L N  KA+ V P R L   T      FK + +    +  +  G     D  + L+N  DI
Sbjct  72   LKNGGKAIYVTPLRAL---TNEKYLTFKDW-ELIGFKVAMTSGDYDTDD--AWLKN-YDI  124

Query  343  VVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            ++ T  +LD L       L++V + VLDE   L        +  +       T   KR  
Sbjct  125  IITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESV-------TIRAKRRN  177

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTV-------HHVVVPVNPKTDRL  455
            ++  SAT+ ++  K++++ +   P   + +    +   +        + V+  +  T ++
Sbjct  178  LLALSATISNY--KQIAKWLGAEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKV  235

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRT  515
                       D +          NS +M       +       ++ E+ + + +     
Sbjct  236  HGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEIL-----  290

Query  516  KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA  575
                D++E+    +         +      H       R    E F++  ++ ++ T   
Sbjct  291  -KQLDDIEEGGSDEKELLKSLISK-GVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTL  348

Query  576  ARGIDIHGVPYVI------N------VT-LPDEKQNYVHRIGRVGRAE--RMGLAISLVA  620
            A G+++     +I      N         +P     Y    GR GR    ++G +I +V 
Sbjct  349  AAGVNLPARTVIIGDIYRFNKKIAGYYDEIP--IMEYKQMSGRAGRPGFDQIGESIVVVR  406

Query  621  TEKE  624
             +++
Sbjct  407  DKED  410


 Score = 42.4 bits (98),  Expect = 0.015, Method: Composition-based stats.
 Identities = 12/64 (19%), Positives = 30/64 (47%), Gaps = 1/64 (2%)

Query  5   SEMGVMPEIAQAVEEMDWLLPTDIQAESIPL-ILGGGDVLMAAETGSGKTGAFSIPVIQI  63
            ++ +   + + +++         Q E++   +L G  +L+ + TGSGKT    + +I  
Sbjct  11  EDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISF  70

Query  64  VYET  67
           + + 
Sbjct  71  LLKN  74


>sp|Q8BGE5|FANCM_MOUSE Fanconi anemia group M protein homolog 
OS=Mus musculus OX=10090 GN=Fancm PE=1 SV=3
Length=2021

 Score = 76.7 bits (187),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 29/140 (21%), Positives = 53/140 (38%), Gaps = 2/140 (1%)

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKG-HQFSCVCLHGDRKPHERKQNLER  560
            K+    + +IF   +   + + +  +Q             +           E+ Q + +
Sbjct  457  KKCHESRVMIFSSFRDSVEEIAEMLLQHRPVIRVMTFVGHASGKNTKGFTQKEQLQVVRQ  516

Query  561  FKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            F+ G    L+ T V   G+DI  V  +I           + R+GR GR  R G  + ++A
Sbjct  517  FRDGGYNTLVSTCVGEEGLDIGEVDLIICFDAQKSPIRLIQRMGRTGRK-RQGRIVVILA  575

Query  621  TEKEKVWYHVCSSRGKGCYN  640
              +E+  Y+   S  K  Y 
Sbjct  576  EGREERTYNQSQSNKKNIYK  595


 Score = 40.5 bits (93),  Expect = 0.083, Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 79/217 (36%), Gaps = 19/217 (9%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            K + + P++ L  Q    ++     +  P+     + G   A ++  +  +   ++  TP
Sbjct  124  KVVFMAPTKPLVTQ---QMEACFHVMGIPQSHMAEMTGSTQAVNRKEIWSSR-RVLFLTP  179

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
              + + ++ G +  + V+ LV+DEA   L       + R      ++       +++  S
Sbjct  180  QVMVNDLTRGAVPATHVKCLVVDEAHKALGNYAYCQVVR------ELVKYTTHFRILALS  233

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPD--------TVHHVVVPVNPKTDRLWERL  459
            AT    D+K + + I +          +  PD         V  +VVP+  +   + +  
Sbjct  234  AT-PGSDIKAVQQVITNLLIGKIELRSEESPDILPYSHERRVEKLVVPLGEELGAIQKTY  292

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEY  496
             +            N     + P +    I + + ++
Sbjct  293  IQILETFASSLIHRNVLMKRDIPNLTKYQIILARDQF  329


>sp|B3DLA6|DICER_XENTR Endoribonuclease Dicer OS=Xenopus tropicalis 
OX=8364 GN=dicer1 PE=2 SV=2
Length=1893

 Score = 76.7 bits (187),  Expect = 6e-13, Method: Composition-based stats.
 Identities = 58/330 (18%), Positives = 116/330 (35%), Gaps = 39/330 (12%)

Query  299  AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDD--LVST  356
            A Q    +     YID   L + L+       +    L   +D  + T  +  D  L+S 
Sbjct  237  ASQPCEIVLDCGPYIDKSGLYQRLL------NELDEALNFLIDCNISTHSKERDSTLISK  290

Query  357  GKLNLSQVRFLVL-----DEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLH  411
              L+  Q   LVL     D+  G++ +    +I     ++          + ++ + T+ 
Sbjct  291  QILSDCQTVLLVLGPWCADKVAGMMVRELQKYIKHEQEEL--------HRKFLLFTDTIL  342

Query  412  SFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHA  471
               +  L E+    P  +D+K        +  ++    P   + +E +   + R  D + 
Sbjct  343  -RKIHALCEEHF-SPASLDMKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYV  400

Query  472  KDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQG-  530
              +     +  +   E  +  +  +             IIF   +     L +   + G 
Sbjct  401  SWSDSEDDDDEDEEIEEKEKTETSFPSPFTNILCG---IIFVERRYTAVVLNRLIKEAGK  457

Query  531  GGPDKKGHQFSCVCLHG-DRKP----------HERKQNLERFKKGDVRFLICTDVAARGI  579
              P+      + +  HG  +             ++++ L +F+  +   LI T +   G+
Sbjct  458  QDPELAYISSNFITGHGIGKNQPRNKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGV  517

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRA  609
            DI     V+   LP E ++YV   GR  RA
Sbjct  518  DIPKCNLVVRFDLPSEYRSYVQSKGR-ARA  546


 Score = 39.7 bits (91),  Expect = 0.13, Method: Composition-based stats.
 Identities = 28/169 (17%), Positives = 59/169 (35%), Gaps = 33/169 (20%)

Query  250  PPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQT-------  302
            P K     L  A D   +   +SG+ +            A+++   +EL+ Q        
Sbjct  34   PRKYQVELLEAALDHNTIVCLNSGSGKT---------FIAVLLS--KELSYQIRGDFSKN  82

Query  303  -------LNNIKQFKKYIDNPKLRELLIIGGVAARD-------QLSVLENGVD-IVVGTP  347
                   +N+ KQ  + +   +    L +G  + ++       +   LE     ++V T 
Sbjct  83   TKRTVFLVNSEKQVSQQVSAVRTHTDLKVGEYSDQEKTQCWAKERWYLEFETHQVLVMTC  142

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTS  396
                +++ +G ++LS +  LV DE    +       I ++         
Sbjct  143  HIFLNVLKSGNVSLSNINLLVFDECHLAIQDHPYREIMKICESCQPCPR  191


>sp|Q0CWI2|MPH1_ASPTN ATP-dependent DNA helicase mph1 OS=Aspergillus 
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=mph1 
PE=3 SV=2
Length=1100

 Score = 76.3 bits (186),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 26/177 (15%), Positives = 60/177 (34%), Gaps = 5/177 (3%)

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGD-RKPHERKQNLERFKKGDV  566
            + +IF   +   + + +   +       +           D      +   +++FK+G  
Sbjct  683  RVMIFVHFRDSAEEVARVLKRYEPMIRPQVFVGQASAKGSDGMNQKTQLGVVQKFKQGTY  742

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV  626
              ++ T +   G+DI  V  ++           + R+GR GR  R G  + L+   KE+ 
Sbjct  743  NTIVATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGRK-RAGNIVLLLMEGKEEE  801

Query  627  WYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDE  683
             Y       +           G    +++ +    +   +   + +   DI    +E
Sbjct  802  SYIKAKDNYEKMQQMI---ASGTRFTFHDDKSPRILPPGVKPIVDKRHIDIPEENEE  855


 Score = 36.6 bits (83),  Expect = 0.97, Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 37/87 (43%), Gaps = 4/87 (5%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + + V P++ L  Q ++           P+ +  ++ G  A   +    ++   +   TP
Sbjct  355  QIVFVAPTKPLVAQQVSACFGVA---GIPRSQTTMLTGEAAPGIRAQEWQDK-RVFFMTP  410

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADG  374
              L + + +G  +  ++  LV+DEA  
Sbjct  411  QTLINDLKSGIADPKRIVLLVVDEAHR  437


>sp|A1C9M6|DCL2_ASPCL Dicer-like protein 2 OS=Aspergillus clavatus 
(strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / 
NRRL 1 / QM 1276 / 107) OX=344612 GN=dcl2 PE=3 SV=1
Length=1389

 Score = 76.3 bits (186),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 91/313 (29%), Gaps = 30/313 (10%)

Query  369  LDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH-FPT  427
            L EA   L      ++ R+        +  K L       T     +K+  ++  H F  
Sbjct  247  LIEAWETLDIEDDPYVKRLRKSSLDGGALEKALMT---GKTFCREQLKRFVDRSRHIFEE  303

Query  428  WVDLKGEDSVPDTVHHVVVPVNPKTDRL-WERLGKSHIRTDDVHAKDNTRPGANSPEMWS  486
              +   +  +  ++ H+   V        W+   ++++ +              S     
Sbjct  304  LGEWAADYYIYTSIQHLKTRVQTSYMTGDWDEAERAYLVSFLSKLPAADIQITLSDAACL  363

Query  487  EAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQ-------------GGGP  533
                 L+         +      +IF + +     +                    G   
Sbjct  364  RISPKLEALIGFLDAMDDPEFSGLIFVKQRATVSVMTDLLAVHPRTRERFRSAAYVGWSN  423

Query  534  DKKGHQF--SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT  591
                  F  + + +HG          L+ F+ G    +I TDV   GIDI     V+   
Sbjct  424  SSGSKDFLGNLLSMHGQLS------TLDDFRSGHKNLIIATDVLEEGIDISACSVVVCYD  477

Query  592  LPDEKQNYVHRIGRVGRAERMGLAISLVATE---KEKVWYHVCSSRGKGCYNTRLKEDGG  648
             P   +++V R GR  R ++   AI   A +       W  +  +  +   +        
Sbjct  478  KPPNLKSFVQRRGR-ARQKQSTYAIMFPAEDSAFDLAKWQTLEQAMIEAYQDDERHLQSA  536

Query  649  CTIWYNEMQLLSE  661
              +     +++  
Sbjct  537  IELERVNEEVVER  549


 Score = 42.0 bits (97),  Expect = 0.024, Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 95/285 (33%), Gaps = 34/285 (12%)

Query  292  VEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAAR---DQL--SVLENGVDIVVGT  346
            + P+  L  Q    I       + P ++   + G        +Q     +   V +VV T
Sbjct  66   LAPTVALCTQQHKVIAS-----NLPAVQTRTLTGLDKVELWTEQAIWDAILKDVRVVVST  120

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR--LQVI  404
               L D +S G + +S++  ++ DEA   + +  ++ I +     P V+  G     +++
Sbjct  121  YAVLADALSHGFMRMSRLALIIFDEAHHCMRKHAANKIMQDFYH-PTVSKFGPSAVPRIM  179

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
              +A   S  V+   E++  F    +L      P      ++  + + + L + L +   
Sbjct  180  GLTA---SPVVRSNREEL--FTIETNLDAVCKTPRAHRQELLKFSHRPE-LKQLLYEPPD  233

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAII----FCRT--KID  518
                  +    R    + E                ++    +++A++    FCR   K  
Sbjct  234  PMGLQVSSQTLRALIEAWETLDIEDDPYVKRLRKSSLDGGALEKALMTGKTFCREQLKRF  293

Query  519  CDNLEQYFIQQGGG---------PDKKGHQFSCVCLHGDRKPHER  554
             D     F + G                 +     + GD    ER
Sbjct  294  VDRSRHIFEELGEWAADYYIYTSIQHLKTRVQTSYMTGDWDEAER  338


>sp|Q8PZR7|HELS_METMA ATP-dependent DNA helicase Hel308 OS=Methanosarcina 
mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 
/ JCM 11833 / OCM 88) OX=192952 GN=hel308 PE=3 SV=1
Length=730

 Score = 75.9 bits (185),  Expect = 8e-13, Method: Composition-based stats.
 Identities = 66/407 (16%), Positives = 139/407 (34%), Gaps = 55/407 (14%)

Query  249  FPPKDGFV--ALSKAPDGYIVKSQHSGN---AQVTQTKFLPNAPKALIVEPSRELAEQTL  303
            +PP+   V   L +  +        SG    A++   K + N  KAL + P R LA +  
Sbjct  25   YPPQAEAVEKGLLEGKNLLAAIPTASGKTLLAELAMLKSVLNGGKALYIVPLRALASEKF  84

Query  304  NNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQ  363
               ++F        +R  +  G    RD+   +    DI+V T  + D L+      + +
Sbjct  85   RRFQEFS----VLGMRVGISTGDYDRRDEGLGIN---DIIVATSEKTDSLLRNETAWMQE  137

Query  364  VRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIM  423
            +  +V DE   + S      +    +++ ++       QV+  SAT+ + D  +L+  + 
Sbjct  138  ISVVVADEVHLIDSPDRGPTLEITLSKLRRMNPS---CQVLALSATVGNAD--ELAAWLD  192

Query  424  HFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPE  483
                  + +  D +    ++ +     K   + +      +       K+  +       
Sbjct  193  AELVLSEWRPTDLMEGVFYNGIFYCKDKEKPVGQPTKDEAVNLVLDTIKEGGQCLVFESS  252

Query  484  MWSEAIKILKGEYAVRAIKEHKMDQAI------IFCRTKIDCDNLEQYFIQQGGGPDKKG  537
              +      K   AV+    ++  + +      I   ++ D  ++    ++ G       
Sbjct  253  RKNCMGFAKKAVSAVKKTLSNEDRETLAGIADEIIENSETDVSSVLATCVRSGTAFH---  309

Query  538  HQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQ  597
                    H       R+     F++G ++ +  T   A G+++     +I        +
Sbjct  310  --------HAGLTTPLRELVENGFREGRIKIISSTPTLAAGLNLPARRVII-----RSYR  356

Query  598  NYVHRIG-----------RVGRAERM-----GLAISLVATEKEKVWY  628
             Y    G             GRA R      G A+ L  + +E V+ 
Sbjct  357  RYSSDSGMQPIPVLEYKQMAGRAGRPRLDPYGEAVLLAKSYEEFVFL  403


 Score = 39.0 bits (89),  Expect = 0.19, Method: Composition-based stats.
 Identities = 21/112 (19%), Positives = 39/112 (35%), Gaps = 13/112 (12%)

Query  5    SEMGVMPEIAQAVEEMDWLLPTDIQAESIPL-ILGGGDVLMAAETGSGKTGAFSIPVIQI  63
              + +  EI +  E    L     QAE++   +L G ++L A  T SGKT    + +++ 
Sbjct  4    ESLDLPDEIKRFYENSGILELYPPQAEAVEKGLLEGKNLLAAIPTASGKTLLAELAMLKS  63

Query  64   VYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSRE  115
            V    K                  L       + R   F++    +   + +
Sbjct  64   VLNGGKA------------LYIVPLRALASEKFRRFQEFSVLGMRVGISTGD  103


>sp|Q8IYD8|FANCM_HUMAN Fanconi anemia group M protein OS=Homo 
sapiens OX=9606 GN=FANCM PE=1 SV=2
Length=2048

 Score = 76.3 bits (186),  Expect = 8e-13, Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 53/140 (38%), Gaps = 2/140 (1%)

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQ-QGGGPDKKGHQFSCVCLHGDRKPHERKQNLER  560
            K+    + +IF   +     + +   Q Q           +           E+ + +++
Sbjct  472  KKRDETRVMIFSSFRDSVQEIAEMLSQHQPIIRVMTFVGHASGKSTKGFTQKEQLEVVKQ  531

Query  561  FKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            F+ G    L+ T V   G+DI  V  +I           V R+GR GR  R G  + +++
Sbjct  532  FRDGGYNTLVSTCVGEEGLDIGEVDLIICFDSQKSPIRLVQRMGRTGRK-RQGRIVIILS  590

Query  621  TEKEKVWYHVCSSRGKGCYN  640
              +E+  Y+   S  +  Y 
Sbjct  591  EGREERIYNQSQSNKRSIYK  610


 Score = 39.3 bits (90),  Expect = 0.18, Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 87/221 (39%), Gaps = 27/221 (12%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV--AARDQLSVLENGVDIVVG  345
            K + + P++ L  Q    I+   + +  P+     + G    + R ++   +    ++  
Sbjct  136  KVVFMAPTKPLVTQ---QIEACYQVMGIPQSHMAEMTGSTQASTRKEIWCSKR---VLFL  189

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQVI  404
            TP  + + +S G    ++++ LV+DEA   L +  Y   +  +               ++
Sbjct  190  TPQVMVNDLSRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFR-------IL  242

Query  405  VCSATLHSFDVKKLSEKIMHFPT-WVDLKGEDSVPDTVHH--------VVVPVNPKTDRL  455
              SAT    D+K + + I +     ++L+ EDS PD + +        ++VP+  +   +
Sbjct  243  ALSAT-PGSDIKAVQQVITNLLIGQIELRSEDS-PDILTYSHERKVEKLIVPLGEELAAI  300

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEY  496
             +   +          + N     + P +    I + + ++
Sbjct  301  QKTYIQILESFARSLIQRNVLMRRDIPNLTKYQIILARDQF  341


>sp|Q5N870|DCL3A_ORYSJ Endoribonuclease Dicer homolog 3a OS=Oryza 
sativa subsp. japonica OX=39947 GN=DCL3A PE=2 SV=1
Length=1651

 Score = 76.3 bits (186),  Expect = 8e-13, Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 55/155 (35%), Gaps = 11/155 (7%)

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKI  517
             L    ++       ++      + +    + K+ +      +    +  + +IF   KI
Sbjct  367  HLIDKRLQQGIDMLLNSESGCVEAAKTGYISPKLYELIQIFHSFSNSRHARCLIFVDRKI  426

Query  518  DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGD------RKPHERKQNLERFKKGDVRFLIC  571
                +++   + G         F+   L G         P  +K  L+ F+ G V  L  
Sbjct  427  TARVIDRMIKKIGHL-----AHFTVSFLTGGRSSVDALTPKMQKDTLDSFRSGKVNLLFT  481

Query  572  TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRV  606
            TDVA  GI +     VI   LP   ++YV   GR 
Sbjct  482  TDVAEEGIHVPECSCVIRFDLPRTTRSYVQSRGRA  516


 Score = 37.8 bits (86),  Expect = 0.54, Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 45/119 (38%), Gaps = 16/119 (13%)

Query  261  APDGYIVKSQHSGNAQVTQTKFLPNAPKALI-VEPSRELAEQTLNNIK-----QFKKYID  314
            A    I         ++ +TK   NA K +I + P+ +L  Q    I+     + ++Y  
Sbjct  56   AGKTMIAVMLIKEFGKINRTK---NAGKVIIFLAPTVQLVTQQCEVIEIHTDFEVEQYYG  112

Query  315  NPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEAD  373
               + +     G   ++Q+S       ++V TP      +    L L  V  ++ DE  
Sbjct  113  AKGVDQWT---GPRWQEQISK----YQVMVMTPQVFLQALRNAFLILDMVSLMIFDECH  164


>sp|P58174|UVRB_MYCPU UvrABC system protein B OS=Mycoplasmopsis 
pulmonis (strain UAB CTIP) OX=272635 GN=uvrB PE=3 SV=1
Length=657

 Score = 75.6 bits (184),  Expect = 9e-13, Method: Composition-based stats.
 Identities = 65/372 (17%), Positives = 124/372 (33%), Gaps = 56/372 (15%)

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            P  L D +    L         +DE+  ++       +N M N       D  R Q +V 
Sbjct  319  PYTLLDYLPEEALVF-------IDESHMMV-----PQLNAMFN------GDRSRKQNLV-  359

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR-  465
                  +  + L   + + P       E   P  ++    P   + ++  +++ K  IR 
Sbjct  360  -----DYGFR-LPSALDNRPLTFSEFEEYKFPK-IYISATPSEYEIEKADQKITKMIIRP  412

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
            T  +     TR   N  E   + ++  K           K ++ +I   TK   + L +Y
Sbjct  413  TGLLDPIIETRSKTNQVEDIYDELQKQKA----------KNERTLILTTTKRFSEELTRY  462

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
            F ++G              +H D K  ER + L + +KG    +I  ++   GID+  V 
Sbjct  463  FQEKGE---------KVAYIHSDHKTFERNEILRKLRKGVYDLVIGINLLREGIDLPEVS  513

Query  586  YVINVT-----LPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYN  640
             VI +           ++ +  +GR  R    G  I       + +   +  +  K    
Sbjct  514  LVIILDADKESFLRNTKSLIQIVGRASR-NSSGKVIFYADFVSKSMRETIEDNFEKRQIQ  572

Query  641  TRLKEDGGCTIWYNEMQLLSEIEEH-LNCTISQV---EPDIKVPVDEFDGKVTYGQKRAA  696
             +  ++ G         +   IE H    +I      E   K  + E +  +   +K+  
Sbjct  573  IQYNKEHGIVPQTIIKDIPEPIEGHGFEHSIEYFLSNEKKSKAQLKEKEKLILDLKKQML  632

Query  697  GGGSYKGHVDIL  708
                   +   +
Sbjct  633  EASQKMNYERAI  644


>sp|A8MB76|HELS_CALMQ ATP-dependent DNA helicase Hel308 OS=Caldivirga 
maquilingensis (strain ATCC 700844 / DSM 13496 / JCM 
10307 / IC-167) OX=397948 GN=hel308 PE=3 SV=1
Length=756

 Score = 75.6 bits (184),  Expect = 9e-13, Method: Composition-based stats.
 Identities = 81/460 (18%), Positives = 142/460 (31%), Gaps = 48/460 (10%)

Query  250  PPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP----KALIVEPSRELAEQTLNN  305
              +     L    +  +V +  SG   + +   + N      K+L+  P + LA      
Sbjct  29   QEEAIRAGLLNGENILMVSATASGKTLLAEVAAVNNVLVNDKKSLVAVPLKALA---FEK  85

Query  306  IKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVR  365
            +  F  Y     +R     G   + D    L    D+++ T  +LD L+      +  V 
Sbjct  86   LNDFNTY-SELGIRVAASTGDYNSED--KWL-GSYDVIITTYEKLDSLLRLKPSWIWNVG  141

Query  366  FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATL-HSFDVKKLSEKIMH  424
             L++DE   +        I  +  ++          Q+I  SAT+ +  ++       + 
Sbjct  142  QLIIDEIHFINDDERGPIIESIVAKL---RMLNLNPQIIGLSATIGNPEELANWLNAKLV  198

Query  425  FPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEM  484
               W  +   + V      VV  VN    R+  +       T D           +S   
Sbjct  199  KSDWRPVSLREGVYH--KGVVTYVNDGEKRISGQGDSLINLTVDTLNDGGQVLVFSSSRQ  256

Query  485  WSEAIKILKGEY----AVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540
             +  I     EY     VR I   +  +     R       L +                
Sbjct  257  GAVRIARKLAEYICSSPVRYIDPGEAGKLAEEVRETSSSRILAEELTGLIKCGVSFH---  313

Query  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVIN-----------  589
                 H   +   R+   E F++G +R L  T   A G+++     ++N           
Sbjct  314  -----HAGLELEVRRVIEEGFRRGVLRVLASTTTLAAGVNLPARRVIVNEYRRYEPGYGF  368

Query  590  VTLPDEKQNYVHRIGRVGRAERM--GLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDG  647
            + +P     Y    GR GR      G AI +V+++ E  +  V     K           
Sbjct  369  IEIP--VMEYKQMAGRAGRPGLDPYGEAIIIVSSKDEVDY--VIDKYIKSPPEYVKSNFM  424

Query  648  GCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGK  687
              T    +   LS +      TI ++          F GK
Sbjct  425  NPTSL--KFHTLSAVASQYAETIDELVKFTSNTFAGFQGK  462


 Score = 37.4 bits (85),  Expect = 0.52, Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 10/119 (8%)

Query  5    SEMGVMPEIAQ-AVEEMDWLLPTDIQAESIPL-ILGGGDVLMAAETGSGKTGAFSIPVIQ  62
             E+ +   +    + +         Q E+I   +L G ++LM + T SGKT    +  + 
Sbjct  4    EELPLPSLLRDFLISKRGIRTLYPPQEEAIRAGLLNGENILMVSATASGKTLLAEVAAVN  63

Query  63   IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHG  121
             V    K        K+ +      L   ++N ++  S   I             +W G
Sbjct  64   NVLVNDK--------KSLVAVPLKALAFEKLNDFNTYSELGIRVAASTGDYNSEDKWLG  114


>sp|A1D4V5|MPH1_NEOFI ATP-dependent DNA helicase mph1 OS=Neosartorya 
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / 
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=mph1 
PE=3 SV=1
Length=1111

 Score = 75.9 bits (185),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 37/200 (19%), Positives = 67/200 (34%), Gaps = 9/200 (5%)

Query  508  QAIIFCRTKIDCDNLEQYFIQQGG--GPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
            + +IF   +   + + +   +      P     Q S     G      +   +++FKKG 
Sbjct  672  RIMIFVHFRDSAEEVVRVLKRYEPLIRPHVFVGQSSAKGSEG-MDQKTQLSIVQKFKKGT  730

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
               ++ T +   G+DI  V  ++           + R+GR GR  R G  + L+   KE+
Sbjct  731  YNTIVATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGRK-RAGNIVLLLMQGKEE  789

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEH-LNCTISQVEPDIKVPVDEF  684
              Y     + K  Y    +     T +         I    +     + + DI V   + 
Sbjct  790  ESY----IKAKDNYEKMQQMIASGTRFTFHDDTSPRILPPGVRPVAEKRQIDIPVENTQA  845

Query  685  DGKVTYGQKRAAGGGSYKGH  704
            D      + R       K H
Sbjct  846  DLPEPRKRARPPKRPPKKFH  865


 Score = 37.8 bits (86),  Expect = 0.42, Method: Composition-based stats.
 Identities = 17/87 (20%), Positives = 38/87 (44%), Gaps = 4/87 (5%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + + V P++ L  Q ++   Q       P+ +  ++ G  A   +    ++   +   TP
Sbjct  344  QIIFVAPTKPLVAQQISACFQVA---GIPRSQTTMLTGEAAPGIRAEEWKSK-RVFFMTP  399

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADG  374
              L + + +G  +  ++  LV+DEA  
Sbjct  400  QTLVNDLKSGIADPKRIVLLVVDEAHR  426


>sp|Q99J87|DHX58_MOUSE ATP-dependent RNA helicase DHX58 OS=Mus 
musculus OX=10090 GN=Dhx58 PE=1 SV=2
Length=678

 Score = 75.2 bits (183),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 50/282 (18%), Positives = 86/282 (30%), Gaps = 30/282 (11%)

Query  370  DEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI-----------VC----SATLHSFD  414
            D         + D I ++ NQI Q        Q             +C     A L    
Sbjct  219  DLCQRRAQDPFGDLIKKLMNQIHQQLEMPDLKQQFGTQMYEQQVVQLCKDAAEAGLQEQR  278

Query  415  VKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDN  474
            V  L  +  +   ++           +          T     R     ++  D H    
Sbjct  279  VYALHLRRYNDALFIHDTVRARDALDMLQDFYDRERTTKTQMVRAESWLLKLFDDHKNVL  338

Query  475  TRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPD  534
             +  A  PE        +     ++        + IIF RT+    +L  +  QQ     
Sbjct  339  GQLAARGPENPKLE---MLERILLKQFGSPGHTRGIIFTRTRQTASSLLLWLRQQPCLQT  395

Query  535  K-------KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV  587
                     G   +    H      ++++ ++ F+ G +  L+ T VA  G+DI     V
Sbjct  396  VGIKPQMLIGAGNTSQSTH--MTQKDQQEVIQEFRDGILSLLVATSVAEEGLDIAQCNVV  453

Query  588  INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYH  629
            +   L   + + V   GR  RA +     S +ATE  +    
Sbjct  454  VRYGLLTNEISMVQARGR-ARAGQS--VYSFLATEGSREMKR  492


>sp|Q6TUI4|DICER_BOVIN Endoribonuclease Dicer OS=Bos taurus OX=9913 
GN=DICER1 PE=2 SV=3
Length=1923

 Score = 75.9 bits (185),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 57/326 (17%), Positives = 111/326 (34%), Gaps = 36/326 (11%)

Query  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN  360
            Q    +     + D   L E L++      ++     N  +I V +  R   L+S   L+
Sbjct  249  QPCEIVVDCGPFTDRSGLYERLLM----ELEEALNFINDCNISVHSKERDSTLISKQILS  304

Query  361  LSQVRFLVL-----DEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDV  415
              +   +VL     D+  G++ +     I     ++          + ++ + T     +
Sbjct  305  DCRAVLVVLGPWCADKVAGMMVRELQKHIKHEQEEL--------HRKFLLFTDTFL-RKI  355

Query  416  KKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNT  475
              L E+    P  +DLK        +  ++    P   + +E +   + R  D +   + 
Sbjct  356  HALCEEHF-SPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSD  414

Query  476  RPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQG-GGPD  534
                   E   E  K      +            IIF   +     L +   + G   P+
Sbjct  415  SEDDEEDEEIEEKEKPETNFPSPFTNILC----GIIFVERRYTAVVLNRLIKEAGKQDPE  470

Query  535  KKGHQFSCVCLHG-DRKP----------HERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
                  + +  HG  +             ++++ L +F+  +   LI T +   G+DI  
Sbjct  471  LAYISSNFITGHGIGKNQPRNKQMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPK  530

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRA  609
               V+   LP E ++YV   GR  RA
Sbjct  531  CNLVVRFDLPTEYRSYVQSKGR-ARA  555


 Score = 39.0 bits (89),  Expect = 0.23, Method: Composition-based stats.
 Identities = 47/284 (17%), Positives = 90/284 (32%), Gaps = 47/284 (17%)

Query  250  PPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTL------  303
            P K     L  A D   +   ++G+ +            A+++  ++EL+ Q        
Sbjct  44   PRKYQVELLEAALDHNTIVCLNTGSGKT---------FIAVLL--TKELSYQIRGDFNRN  92

Query  304  ------------NNIKQFKKYIDNPKLREL----LIIGGVAARDQLSVLENGVDIVVGTP  347
                           +Q      +  L+      L +     +++ +       +++ T 
Sbjct  93   GKRTVFLVNSANQVAQQVSAVRTHSDLKVGEYSNLEVSASWTKEKWNQEFTKHQVLIMTC  152

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
                +++  G L+LS +  LV DE    +       I ++    P           I+  
Sbjct  153  YVALNVLKNGYLSLSDINLLVFDECHLAILDHPYREIMKLCENCPSCPRILGLTASILN-  211

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH--------HVVVPVNPKTDR--LWE  457
                  D ++L EKI      +    E +    V          +VV   P TDR  L+E
Sbjct  212  ---GKCDPEELEEKIQKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGPFTDRSGLYE  268

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI  501
            RL        +     N    +   +    + +IL    AV  +
Sbjct  269  RLLMELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVV  312


>sp|Q2UNX5|DCL2_ASPOR Dicer-like protein 2 OS=Aspergillus oryzae 
(strain ATCC 42149 / RIB 40) OX=510516 GN=dcl2 PE=3 SV=1
Length=1377

 Score = 75.6 bits (184),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 91/289 (31%), Gaps = 28/289 (10%)

Query  404  IVCSATLHSFDVKKLSEKIMH-FPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL-WERLGK  461
            ++   TL +  +K+  ++  H F    +   +  +  +V  +   +  ++  + WE   +
Sbjct  276  LMVRKTLCNEQIKRFVDRSRHIFAELGEWAADYYICTSVEQLRTTIRDQSLTMDWEDEER  335

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
            +++                +          L          +      +IF + ++    
Sbjct  336  AYLSNFLSKLPVAEVQANLADPNNFTMSPKLAALINFLDKFDDPEFSGLIFVKQRVTVSV  395

Query  522  LEQYFIQQGGGPDKKGHQFSCVCLHGDRKP---------HERKQNLERFKKGDVRFLICT  572
            L +         D+           G  +           +++  ++ F+ G    ++ T
Sbjct  396  LARLLSLHPQTRDRFRCAAYVGMSVGSCRQDMVGDWHNAKKQRGTMDDFRSGRKNLIVTT  455

Query  573  DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS  632
             V   GID+     V+    P   ++++ R GR  R ++   AI     ++         
Sbjct  456  SVLEEGIDVTACRVVVCFDKPANLKSFIQRRGR-ARQQKSTYAIMFSTADEHGDLRRW--  512

Query  633  SRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPV  681
                     ++ E      + +E + L E E         V+ ++   +
Sbjct  513  ---------QILEQAMVEAYQDEERRLREAE-----AQEAVDENVPEMI  547


 Score = 46.3 bits (108),  Expect = 0.001, Method: Composition-based stats.
 Identities = 26/131 (20%), Positives = 47/131 (36%), Gaps = 16/131 (12%)

Query  265  YIVKSQHSGNAQVTQTKFLPN----APKAL--IVEPSRELAEQTLNNIKQFKKYIDNPKL  318
             +     +G  Q+   +         P+ L   + P+  L  Q    I+        P +
Sbjct  33   IVAMDTGTGKTQIALLRIAHQLEGGGPRKLTWFLTPTVALCLQQYEVIRSHL-----PAV  87

Query  319  RELLIIGGVAARDQLSV-----LENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEAD  373
            R   I G        S      L     +VV T   L + ++ G + +SQ+  L+ DEA 
Sbjct  88   RACTITGLDKVERWKSQYIWDELLKDKQVVVSTHAVLFEALTHGFVRISQLGLLIFDEAH  147

Query  374  GLLSQGYSDFI  384
              + +  ++ I
Sbjct  148  HCMRRHPANMI  158


>sp|O13799|YE02_SCHPO Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC17H9.02 
PE=1 SV=1
Length=1030

 Score = 75.6 bits (184),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 60/435 (14%), Positives = 133/435 (31%), Gaps = 76/435 (17%)

Query  236  AELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQ---TKFLPNAPKALIV  292
                + F  + F          + +     +     +G   + +    + L N  + +  
Sbjct  118  PAKTYPFELDPF---QSTAIKCVERMESVLVSAHTSAGKTVIAEYAIAQALKNRQRVIYT  174

Query  293  EPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDD  352
             P + L+ Q    +    ++ D       L+ G V+     S L    +I+         
Sbjct  175  SPIKSLSNQKYREL--LSEFGD-----VGLMTGDVSINPSASCLIMTTEILRA-------  220

Query  353  LVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHS  412
            ++      + ++ +++ DE   +  +            +P        ++ I  SATL +
Sbjct  221  MLYKNSEIMHEIAWVIFDEVHYMRDKDRGVVWEETLILLPDA------IRFIFLSATLPN  274

Query  413  F-DVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLW---ERLGKSHIRTDD  468
                 +   +I   P  V        P  + H + P       +    +   K+      
Sbjct  275  ALQFARWISEIHKQPCHVVYTDYRPTP--LQHFIYPQGADGIYMLVDEKNKFKTENFKKV  332

Query  469  VHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQ  528
            +   D++    N  +   +  K    E  +  +  ++ D  I+FC +K +C+     F +
Sbjct  333  LEVLDHSTRQENYSKSSKKVKKSSSLERIINMVLSNRYDPIIVFCFSKKECEINAHQFGK  392

Query  529  QGGGPDKKGHQFSCVCLHG--DRKPHER-KQNLER-------------------------  560
                  +     + +           +R  +  E                          
Sbjct  393  LDLNDTENKELVTEIFDSAINQLSEEDRGLRQFEEMRSLLLRGIGIHHSGLLPILKELVE  452

Query  561  --FKKGDVRFLICTDVAARGIDIHGVPYVI----------NVTLPDEKQNYVHRIGRVGR  608
              F++G VR L  T+  + G+++     V+          N       + Y+   GR GR
Sbjct  453  ILFQEGLVRILFATETFSIGLNMPA-RTVLFTKAQKFSGNNFRWLTSGE-YMQMSGRAGR  510

Query  609  AE--RMGLAISLVAT  621
                  GL+I ++  
Sbjct  511  RGIDTKGLSIVILDQ  525


>sp|A2Q8R2|MPH1_ASPNC ATP-dependent DNA helicase mph1 OS=Aspergillus 
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) 
OX=425011 GN=mph1 PE=3 SV=2
Length=1124

 Score = 75.6 bits (184),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 79/226 (35%), Gaps = 11/226 (5%)

Query  501  IKEHKMDQAIIFCRTKIDCDNLEQYFIQQGG--GPDKKGHQFSCVCLHGDRKPHERKQNL  558
             K+    + +IF   +   + + +   +      P     Q S     G      +   +
Sbjct  687  NKDQPATRVMIFVHFRDSAEEVTRVLKRYEPMIRPHVFVGQSSAKGSEG-MGQKTQLDIV  745

Query  559  ERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL  618
            ++FKKG    ++ T +   G+DI  V  ++           + R+GR GR  R G    L
Sbjct  746  QKFKKGTYNTIVATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGRK-RSGKITLL  804

Query  619  VATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEM--QLLSEIEEHLNCTISQVEPD  676
            +   KE+  Y    ++       ++   G    ++++M  ++L      +      ++  
Sbjct  805  LMQGKEEESY--IKAKDNYEKMQQMIASGTRFTFHDDMSPRILPPGVRPV-ADKRAIDIP  861

Query  677  IKVPVDEFDGKVTYGQ--KRAAGGGSYKGHVDILAPTVQELAALEK  720
             +  V +       G+  KR         +V+    T   LA   K
Sbjct  862  EENTVRDLPEPKRRGRAPKRPPKKFHMPDNVETGFTTASHLAGTSK  907


 Score = 36.6 bits (83),  Expect = 1.1, Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 37/87 (43%), Gaps = 4/87 (5%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + + V P++ L  Q ++   +       P+ +  ++ G  A   +    +    +   TP
Sbjct  366  QIVFVAPTKPLVAQQISACFEVA---GIPRSQTTMLTGEAAPGIRAEEWKAK-RVFFMTP  421

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADG  374
              L + + TG  +  ++  +V+DEA  
Sbjct  422  QTLINDLKTGIADPKRIVLVVVDEAHR  448


>sp|Q75AA7|MPH1_EREGS ATP-dependent DNA helicase MPH1 OS=Eremothecium 
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 
/ NRRL Y-1056) OX=284811 GN=MPH1 PE=3 SV=2
Length=1077

 Score = 75.6 bits (184),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 38/227 (17%), Positives = 76/227 (33%), Gaps = 8/227 (4%)

Query  413  FDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAK  472
             ++ K  +     P+++       V D +          + R+           + V   
Sbjct  415  KNITKTCQAYTANPSFLGHGKLYRVRDELSTFFASAGDDS-RVIIFTELRESALELVKCV  473

Query  473  DNTRPGANSPEMWSEAIKILKGEYAVRAIKEH------KMDQAIIFCRTKIDCDNLEQYF  526
            DN       P ++    K  +       +++H      K+D+       K   D   +  
Sbjct  474  DNMNDRFIRPHIFIGQAKGKESFDDGEYLRKHAPKGRKKVDRIRRLEEEKRLADEKLRKK  533

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
             ++      +    S           ++K+ +  FKKGD   L+CT +   G+DI  V  
Sbjct  534  EEEKLARTARRTGSSEEAQISGMTQKQQKEVISLFKKGDYNVLVCTSIGEEGLDIGEVDM  593

Query  587  VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS  633
            +I           + R+GR GR  R G  + L++  + + +      
Sbjct  594  IICYDTTSSPIKNIQRMGRTGRK-RDGRIVLLLSDNEPRKFEQAMED  639


 Score = 41.3 bits (95),  Expect = 0.038, Method: Composition-based stats.
 Identities = 31/183 (17%), Positives = 72/183 (39%), Gaps = 20/183 (11%)

Query  286  APKALIVEPSREL-AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
              K +   P+R L A+Q    +       ++  +   L+      R+Q+   +    +  
Sbjct  135  GTKIIFTAPTRPLVAQQIKACLGITGIPYNDTAI---LLDKSRKHREQIWSEKR---VFF  188

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TP  +++ +  G LN   V  LV+DEA           + +  ++           +V+
Sbjct  189  ATPQVVENDLKRGALNPKDVVLLVIDEAHRARGSYAYVELTKFIDRF------NTSYRVL  242

Query  405  VCSATLHS--FDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-----HVVVPVNPKTDRLWE  457
              +AT  +    V+++ + +      +  +  + +   +       V+VP+ P+ + + E
Sbjct  243  ALTATPATDLEGVQEVVDNLQISKIELRTEESEDIVRYMKRRDTEEVIVPLIPEIEDIIE  302

Query  458  RLG  460
            +LG
Sbjct  303  QLG  305


>sp|Q9BYX4|IFIH1_HUMAN Interferon-induced helicase C domain-containing 
protein 1 OS=Homo sapiens OX=9606 GN=IFIH1 PE=1 SV=3
Length=1025

 Score = 75.6 bits (184),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 75/215 (35%), Gaps = 16/215 (7%)

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN  521
              + T         +  A +PE  +E +  L+     +  +  +  + IIF +T+     
Sbjct  674  RFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYA  733

Query  522  LEQYFIQQGGGPDKKGHQFSCV-CLHGD----RKPHERKQNLERFKKGDVRFLICTDVAA  576
            L Q+  +     +        +   H         +E+K+ + +F+ G +  LI T VA 
Sbjct  734  LSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAE  793

Query  577  RGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAE--------RMGLAISLVATEKEKVWY  628
             G+DI     VI   L   +   V   GR  RA+          G  +  +  E    + 
Sbjct  794  EGLDIKECNIVIRYGLVTNEIAMVQARGR-ARADESTYVLVAHSGSGV--IEHETVNDFR  850

Query  629  HVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIE  663
                 +   C      E+    I   +MQ + E +
Sbjct  851  EKMMYKAIHCVQNMKPEEYAHKILELQMQSIMEKK  885


 Score = 37.0 bits (84),  Expect = 0.78, Method: Composition-based stats.
 Identities = 13/49 (27%), Positives = 20/49 (41%), Gaps = 0/49 (0%)

Query  27   DIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGK  75
              Q E     L G ++++   TGSGKT          + +  K  + GK
Sbjct  310  PYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGK  358


>sp|Q23223|MTR4_CAEEL mRNA transport homolog 4 OS=Caenorhabditis 
elegans OX=6239 GN=mtr-4 PE=3 SV=1
Length=1026

 Score = 75.6 bits (184),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 69/447 (15%), Positives = 131/447 (29%), Gaps = 87/447 (19%)

Query  236  AELKFNFGEEEFKF-------PPKDGFVALSKAPDGYIVKSQHSGN---AQVTQTKFLPN  285
            AEL+ N G E  K+         K   + +       +     +G    A     K L  
Sbjct  108  AELRENSGTEPAKYYPFQLDAFQKQAILCIDNNQSVLVSAHTSAGKTVVATYAIAKCLRE  167

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
              + +   P + L+ Q    +++  K          L+ G V      S L    +I   
Sbjct  168  KQRVIYTSPIKALSNQKYRELEEEFK-------DVGLMTGDVTLNPDASCLVMTTEI---  217

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQG----YSDFINRMHNQIPQVTSDGKRL  401
                L  ++  G   + +V ++V DE   +  +     + + I  M   I Q        
Sbjct  218  ----LRSMLYRGSEIMKEVGWVVYDEIHYMRDKERGVVWEETIILMSKNIKQA-------  266

Query  402  QVIVCSATLHS-FDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLG  460
                 SAT+ +     +    I   P  V++   D  P  + H + PV  +       + 
Sbjct  267  ---FLSATIPNARQFAQWVASIKQQP--VNVVYTDYRPTPLQHWIYPVGGEGMYEVVNVK  321

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIK------ILKGEYAVRAIKEHKMDQAIIFCR  514
                      A        +S   +++                +R++  +     I+F  
Sbjct  322  GEFREDKFRDAMSGLATAGDSAGSFNKRRTGGGTQGDSNVLKIIRSVASNDGLNCIVFSF  381

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL-----------------------------  545
            ++ +C++            D +      V                               
Sbjct  382  SRKECESYAISLKDMDFNKDHEKGMVKSVYESAIAQLSPEDQKLPQILNILPLLRRGIGV  441

Query  546  -HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVIN----VTLPDE----K  596
             H    P  ++     F +G V+ L  T+  + G+++     V          D      
Sbjct  442  HHSGLMPILKETIEILFGEGLVKVLFATETFSMGLNMPARTVVFTSARKFDGSDNRYITS  501

Query  597  QNYVHRIGRVGRAER--MGLAISLVAT  621
              Y+   GR GR  +   G  I +V +
Sbjct  502  GEYIQMAGRAGRRGKDDRGTVILMVDS  528


>sp|D3Z4R1|HFM1_MOUSE Probable ATP-dependent DNA helicase HFM1 
OS=Mus musculus OX=10090 GN=Hfm1 PE=3 SV=2
Length=1434

 Score = 75.6 bits (184),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 69/468 (15%), Positives = 144/468 (31%), Gaps = 70/468 (15%)

Query  247  FKFPPKDGFVALSKAPDGYIV-KSQHSGN---AQVTQTKFLPNAP------KALIVEPSR  296
            F +     F  L      +++     SG     ++  T+ L   P      K + + P +
Sbjct  280  FNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLMEVPLPWLNMKIVYMAPIK  339

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVS-  355
             L  Q  ++ K+  K+     L    + G     D   +     +I++ TP + D +   
Sbjct  340  ALCSQRFDDWKE--KF-GPVGLNCKELTGDTVMDDLFEI--QHANIIITTPEKWDSVTRK  394

Query  356  -TGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFD  414
                  +  VR  ++DE   +  +     +  + +++  V S  +     + SA      
Sbjct  395  WRDNSFIQLVRLFLIDEVHVIKDENRGPTLEVVVSRMKTVQSLSRD----LESA------  444

Query  415  VKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDN  474
                       P  V      +       +   +    +R    L            K  
Sbjct  445  ----------SPVPVRFVAVSATIPNAEDIAEWL-SDGERPAVCLKMDESHRPVKLQKVV  493

Query  475  TRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD--------------  520
                 +S +   +    L  +              ++FC T+                  
Sbjct  494  LGFPCSSSQTEFKFDLALNYKVYSVIRTYSDQKPTLVFCSTRKGVQQAASVLVKDAKFII  553

Query  521  NLEQYFIQQGGGPDKKGHQ------FSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
            ++EQ    Q      +  +      +     H   +  +RK     F  GD+  L  T  
Sbjct  554  SVEQKLRLQKSAYSIRDSKLKDTLVYGVGYHHAGMELSDRKLVEGLFTSGDLPVLFTTST  613

Query  575  AARGIDIHGVPYVINVTLPDE---KQNY-----VHRIGRVGR--AERMGLAISL--VATE  622
             A G+++     VI  T+       + Y     +  IGR GR   +    A+ +  ++T 
Sbjct  614  LAMGMNMPAHLVVIKSTMHYSGGVFEEYSETDILQMIGRAGRPQFDTTATAVIMTRLSTR  673

Query  623  KEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTI  670
            ++ V    C+   +   +  L E     I  + +  ++   + +  T+
Sbjct  674  EKYVQMLACNDTVESSLHRHLIEHLNAEIVLHTITDVNIALDWIRSTM  721


 Score = 35.9 bits (81),  Expect = 2.0, Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (3%)

Query  28   IQAESIPLIL-GGGDVLMAAETGSGKTGAFSIPVIQIVYE  66
            IQ+++   +L    + ++ A TGSGKT  F + + +++ E
Sbjct  283  IQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLME  322


>sp|A0MQH0|DICER_CRIGR Endoribonuclease Dicer OS=Cricetulus griseus 
OX=10029 GN=DICER1 PE=2 SV=3
Length=1917

 Score = 75.2 bits (183),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 59/328 (18%), Positives = 115/328 (35%), Gaps = 36/328 (11%)

Query  299  AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGK  358
            A Q    +     + D   L E L++      ++     N  ++ V +  R   L+S   
Sbjct  247  ASQPCEIVVDCGPFTDRSGLYERLLM----ELEEAINFINDCNVSVHSKERDSTLISKQI  302

Query  359  LNLSQVRFLVL-----DEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSF  413
            L+  +   +VL     D+  G++ +    +I     ++          + ++ + TL   
Sbjct  303  LSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEEL--------HRKFLLFTDTLL-R  353

Query  414  DVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKD  473
             +  L E+    P  +DLK        +  ++    P   + +E +   + R  D +   
Sbjct  354  KIHALCEEHF-SPASLDLKYVTPKVMKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSW  412

Query  474  NTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQG-GG  532
            +     +  E   E  K      +            IIF   +     L +   + G   
Sbjct  413  SDSEDDDDDEEIEEKEKPETNFPSPFTNILC----GIIFVERRYTAVVLNRLIKEAGKQD  468

Query  533  PDKKGHQFSCVCLHG-DRKP----------HERKQNLERFKKGDVRFLICTDVAARGIDI  581
            P+      + +  HG  +             ++++ L +F+  +   LI T V   G+DI
Sbjct  469  PELAYISSNFITGHGIGKNQPRSKQMEAEFRKQEEVLRKFRAHETNLLIATSVVEEGVDI  528

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRA  609
                 V+   LP E ++YV   GR  RA
Sbjct  529  PKCNLVVRFDLPTEYRSYVQSKGR-ARA  555


 Score = 40.9 bits (94),  Expect = 0.060, Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 90/284 (32%), Gaps = 47/284 (17%)

Query  250  PPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTL------  303
            P K     L  A D   +   ++G+ +            A+++  ++ELA Q        
Sbjct  44   PRKYQVELLEAALDHNTIVCLNTGSGKT---------FIAVLL--TKELAHQIRGDLNPR  92

Query  304  ------------NNIKQFKKYIDNPKLREL----LIIGGVAARDQLSVLENGVDIVVGTP  347
                           +Q      +  L+      L +     +++ S       +++ T 
Sbjct  93   AKRTVFLVNSANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWSQEFTKHQVLIMTC  152

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
                +++  G L+LS +  LV DE    +       I ++    P           I+  
Sbjct  153  YVALNVLKNGYLSLSDINLLVFDECHLAILDHPYREIMKLCESCPSCPRILGLTASILN-  211

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH--------HVVVPVNPKTDR--LWE  457
                  D ++L EKI      +    E +    V          +VV   P TDR  L+E
Sbjct  212  ---GKCDPEELEEKIQKLEKILKSNAETATDLVVLDRYASQPCEIVVDCGPFTDRSGLYE  268

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI  501
            RL        +     N    +   +    + +IL    AV  +
Sbjct  269  RLLMELEEAINFINDCNVSVHSKERDSTLISKQILSDCRAVLVV  312


>sp|P56996|UVRB_NEIMA UvrABC system protein B OS=Neisseria meningitidis 
serogroup A / serotype 4A (strain DSM 15465 / Z2491) 
OX=122587 GN=uvrB PE=3 SV=1
Length=675

 Score = 74.8 bits (182),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 60/315 (19%), Positives = 108/315 (34%), Gaps = 53/315 (17%)

Query  434  EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK  493
            E  +P TV     P   + +   + + +    T  V  +   RP A   +     I    
Sbjct  389  EKVMPQTVFVSATPAKYEEEHAGQVVEQVVRPTGLVDPQIIIRPVATQVDDLMSEIND--  446

Query  494  GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
                    +  K ++ ++   TK   + L  Y+ + G              LH D    E
Sbjct  447  --------RIQKGERVLVTTLTKRMAEQLTDYYSELG---------IKVRYLHSDIDTVE  489

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV--HR-----IGRV  606
            R + +   + G    L+  ++   G+DI  V  V  +    +K+ ++  HR     IGR 
Sbjct  490  RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILD--ADKEGFLRSHRSLIQTIGRA  547

Query  607  GRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIE--E  664
             R    G+AI                      Y  ++ +     I   E +   +I+  E
Sbjct  548  AR-NVNGVAI---------------------LYADKITDSMKAAIDETERRREKQIKFNE  585

Query  665  HLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYK-GHVDILAPTVQELAALEKEAQ  723
                   Q++  +K  +D    +   G+ R  G    K G +      ++E+A LEK  Q
Sbjct  586  EHGIVPQQIKKQVKDIIDGVYHEEDSGKGRRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQ  645

Query  724  TSFLHLGYLPNQLFR  738
             +   L +    + R
Sbjct  646  QAARDLQFEEAAVLR  660


>sp|Q25BN1|DICER_CHICK Endoribonuclease Dicer OS=Gallus gallus 
OX=9031 GN=DICER1 PE=2 SV=3
Length=1921

 Score = 75.2 bits (183),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 59/328 (18%), Positives = 111/328 (34%), Gaps = 40/328 (12%)

Query  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE--NGVDIVVGTPGRLDDLVSTGK  358
            Q    +     Y D   L       G   R+    L   N  +I V +  R   L+S   
Sbjct  249  QPCEIVVDCGPYTDKSGLY------GRLLRELDEALHFLNDCNISVHSKERDSTLISKQI  302

Query  359  LNLSQVRFLVL-----DEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSF  413
            L+  +   +VL     D+  G++ +    +I     ++          + ++ + T    
Sbjct  303  LSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEEL--------HRKFLLFTDTFL-R  353

Query  414  DVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKD  473
             +  L E+    P  +DLK        +  ++    P   + +E +   + R  D +   
Sbjct  354  KIHALCEEHF-SPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSW  412

Query  474  NTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQG-GG  532
            +     +  E   E  K      +            IIF   +     L +   + G   
Sbjct  413  SDSEDDDEDEEIEEKEKPETNFPSPFTNILC----GIIFVERRYTAVVLNRLIKEAGKQD  468

Query  533  PDKKGHQFSCVCLHG-DRKP----------HERKQNLERFKKGDVRFLICTDVAARGIDI  581
            P+      + +  HG  +             ++++ L +F+  +   LI T +   G+DI
Sbjct  469  PELAYISSNFITGHGIGKNQPRNKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDI  528

Query  582  HGVPYVINVTLPDEKQNYVHRIGRVGRA  609
                 V+   LP E ++YV   GR  RA
Sbjct  529  PKCNLVVRFDLPTEYRSYVQSKGR-ARA  555


 Score = 39.3 bits (90),  Expect = 0.17, Method: Composition-based stats.
 Identities = 27/169 (16%), Positives = 52/169 (31%), Gaps = 33/169 (20%)

Query  250  PPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQF  309
            P K     L  A D   +   ++G+ +            A+++  ++EL+ Q   +  + 
Sbjct  44   PRKYQVELLEAALDHNTIVCLNTGSGKT---------FIAVLL--TKELSYQIRGDFNKN  92

Query  310  KKYIDNPKLRELLIIGGVAARDQLSVLENGV----------------------DIVVGTP  347
             K           +   V+A    S L+ G                        ++V T 
Sbjct  93   GKRTVFLVNSANQVAQQVSAVRTHSDLKVGEYSSLEVTESWTKEKWSQEFSKHQVLVMTC  152

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTS  396
                 ++    L+LS +  LV DE    +       I ++    P    
Sbjct  153  HVALTVLRNEYLSLSNINLLVFDECHLAIQDHPYREIMKICEDYPSCPR  201


>sp|Q09884|DCR1_SCHPO Protein Dicer OS=Schizosaccharomyces pombe 
(strain 972 / ATCC 24843) OX=284812 GN=dcr1 PE=1 SV=1
Length=1374

 Score = 74.8 bits (182),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 41/198 (21%), Positives = 66/198 (33%), Gaps = 17/198 (9%)

Query  448  VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD  507
            ++   +   +RL        +    DN                    E      ++    
Sbjct  303  LSDDEELAIDRLKIFVEDWKNNKYSDNGPRIPVFDSTDVTDKVFKLLELLKATYRKSDSV  362

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE------RKQ-NLER  560
            + +IF   K     L   F++    P+ + H F     HG     E      R++  L +
Sbjct  363  RTVIFVERKATAFTLS-LFMKTLNLPNIRAHSFIG---HGPSDQGEFSMTFRRQKDTLHK  418

Query  561  FKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA  620
            FK G    LI T VA  GID+     VI   +      YV   GR  RA      I  + 
Sbjct  419  FKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYVQSRGR-ARAMASKFLI-FLN  476

Query  621  TEK----EKVWYHVCSSR  634
            TE+    E++ +   + +
Sbjct  477  TEELLIHERILHEEKNLK  494


>sp|A1CS00|MPH1_ASPCL ATP-dependent DNA helicase mph1 OS=Aspergillus 
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=mph1 PE=3 SV=1
Length=1119

 Score = 74.8 bits (182),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 36/181 (20%), Positives = 65/181 (36%), Gaps = 9/181 (5%)

Query  508  QAIIFCRTKIDCDNLEQYFIQQGG--GPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
            + ++F   +   + + +   +      P     Q S     G      +   +++FKKGD
Sbjct  679  RIMVFAHFRDSAEEIVRVLKRYEPLIRPHVFVGQSSAKGSEG-MDQKTQLSIVQKFKKGD  737

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
               ++ T +   G+DI  V  ++           + R+GR GR  R G  + L+   KE+
Sbjct  738  YNTIVATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGRK-RAGNIVLLLMQGKEE  796

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEH-LNCTISQVEPDIKVPVDEF  684
              Y     R K  Y    +     T +         I    +  T  + + DI V   + 
Sbjct  797  ESY----IRAKDNYEKMQEMIASGTRFAFHDDTSPRILPPGIRPTADKKQIDIPVENTQA  852

Query  685  D  685
            D
Sbjct  853  D  853


 Score = 37.4 bits (85),  Expect = 0.68, Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 36/87 (41%), Gaps = 4/87 (5%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + + V P++ L  Q ++           P+ +  ++ G  A   +    +    +   TP
Sbjct  351  QIIFVAPTKPLVSQQISACFGIA---GIPRSQTTMLTGEAAPGIRAEEWKAK-RVFFMTP  406

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADG  374
              L + + +G  +  ++  LV+DEA  
Sbjct  407  QTLINDLKSGIADPKRIVLLVVDEAHR  433


>sp|P47047|MTR4_YEAST ATP-dependent RNA helicase DOB1 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MTR4 
PE=1 SV=1
Length=1073

 Score = 74.8 bits (182),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 81/554 (15%), Positives = 169/554 (31%), Gaps = 105/554 (19%)

Query  235  NAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQ---TKFLPNAPKALI  291
            N    + F  + F          + +     +     +G   V +    + L N  + + 
Sbjct  141  NEARTYPFTLDPF---QDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIY  197

Query  292  VEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLD  351
              P + L+ Q    +    ++ D       L+ G +        L    +I       L 
Sbjct  198  TSPIKALSNQKYREL--LAEFGD-----VGLMTGDITINPDAGCLVMTTEI-------LR  243

Query  352  DLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLH  411
             ++  G   + +V +++ DE   +  +            +P       +++ +  SAT+ 
Sbjct  244  SMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPD------KVRYVFLSATIP  297

Query  412  S-FDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP---------VNPKTDRLWERLGK  461
            +  +  +   KI   P  +        P  + H + P         V+ K+    E   K
Sbjct  298  NAMEFAEWICKIHSQPCHIVYTNFRPTP--LQHYLFPAHGDGIYLVVDEKSTFREENFQK  355

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGE------YAVRAIKEHKMDQAIIFCRT  515
            +     +    D     +   +  +      KG+        V+ I + K +  I+F  +
Sbjct  356  AMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFS  415

Query  516  KIDCDNLEQYFIQQGGGPDKKGHQFS-----CVCL-------------------------  545
            K DC+ L     +     D +    +      + L                         
Sbjct  416  KRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIH  475

Query  546  HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVI---------NVTLPDEK  596
            H    P  ++     F++G ++ L  T+  + G+++     V                  
Sbjct  476  HSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGG  535

Query  597  QNYVHRIGRVGRAE--RMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYN  654
            + Y+   GR GR      G+ I ++    EK+   V     KG  +     D    + YN
Sbjct  536  E-YIQMSGRAGRRGLDDRGIVIMMI---DEKMEPQVAKGMVKGQADRL---DSAFHLGYN  588

Query  655  EMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYG-----QKRAAGGGSYKGHVDILA  709
             +  L  +E         + P+  +    F  +         +K A     + G      
Sbjct  589  MILNLMRVE--------GISPEFMLEHSFFQFQNVISVPVMEKKLAELKKDFDGIEVEDE  640

Query  710  PTVQELAALEKEAQ  723
              V+E   +E+  +
Sbjct  641  ENVKEYHEIEQAIK  654


>sp|Q6TV19|DICER_DANRE Endoribonuclease Dicer OS=Danio rerio OX=7955 
GN=dicer1 PE=2 SV=2
Length=1865

 Score = 75.2 bits (183),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 66/378 (17%), Positives = 127/378 (34%), Gaps = 41/378 (11%)

Query  299  AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGK  358
            A Q    +    +Y D   L E L+       D+     N  ++ V    R    +S   
Sbjct  233  ASQPREEVLDCGQYQDQSGLSERLL----NELDEALNFLNDCNLSVHREDRDPTFISKQV  288

Query  359  LNLSQVRFLVL-----DEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSF  413
            LN  +    VL     D+A G++ +    +I     ++          + ++ + T+   
Sbjct  289  LNDCRAVLTVLGPWCADKAAGIMVRELQKYIKHEQEEL--------NRKFLLFTDTIL-R  339

Query  414  DVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKD  473
             +  L E+    P  +DLK        +  ++    P   + +E +   + R  D +   
Sbjct  340  KIHALCEEHF-SPASLDLKFVTPKVIRLLEILHEYKPFERQQFESVEWYNNRNQDNYVSW  398

Query  474  NTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGP  533
            +     +  E      K      +            IIF   +     L +  I++ G  
Sbjct  399  SDSEDDDEDEEAEAKEKTEANFPSPFTNILC----GIIFVERRYTAVVLNR-LIKEAGKQ  453

Query  534  DKKGHQFSCVCLHG---DRKP----------HERKQNLERFKKGDVRFLICTDVAARGID  580
            D +    S   + G    +             ++++ L +F+  +   LI T +   G+D
Sbjct  454  DPELAYISSNFITGHSIGKNQPRNKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVD  513

Query  581  IHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSS--RGKGC  638
            I     V+   LP E ++YV   GR  RA      I L  +E+ K +     +    +  
Sbjct  514  IPKCNLVVRFDLPTEYRSYVQSKGR-ARAPVSNY-IMLADSERTKTFQEDLKTYKAIEKI  571

Query  639  YNTRLKEDGGCTIWYNEM  656
               +  +   C  +  E 
Sbjct  572  LRNKCSKSAECNDFELEP  589


 Score = 39.3 bits (90),  Expect = 0.15, Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 0/56 (0%)

Query  341  DIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTS  396
             ++V T      ++  G L LS++  LV DE    ++      I ++    P    
Sbjct  132  QVLVMTCHIFLHVLKNGVLPLSKINLLVFDECHLAITGHPYREIMKICEGCPSCPR  187


>sp|Q12WZ6|HELS_METBU ATP-dependent DNA helicase Hel308 OS=Methanococcoides 
burtonii (strain DSM 6242 / NBRC 107633 / OCM 
468 / ACE-M) OX=259564 GN=hel308 PE=3 SV=1
Length=760

 Score = 74.4 bits (181),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 69/420 (16%), Positives = 132/420 (31%), Gaps = 89/420 (21%)

Query  249  FPPKDGF--VALSKAPDGYIVKSQHSGN---AQVTQTKFLPNAPKALIVEPSRELAEQTL  303
            +PP+     + L +  +        SG    A++   K +    KAL + P R LA +  
Sbjct  25   YPPQAEAIEMGLLEKKNLLAAIPTASGKTLLAELAMIKAIREGGKALYIVPLRALASEKF  84

Query  304  NNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQ  363
               K+   +     ++  +  G + +R     +    DI+V T  + D L+  G   + +
Sbjct  85   ERFKELAPF----GIKVGISTGDLDSRADWLGVN---DIIVATSEKTDSLLRNGTSWMDE  137

Query  364  VRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIM  423
            +  +V+DE   L S+     +     ++ ++  D   +QV+  SAT              
Sbjct  138  ITTVVVDEIHLLDSKNRGPTLEVTITKLMRLNPD---VQVVALSAT--------------  180

Query  424  HFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPE  483
                                 V       D L   L  S  R  D+H         N P 
Sbjct  181  ---------------------VGNAREMADWLGAALVLSEWRPTDLHEGVLFGDAINFPG  219

Query  484  MWSEAIKILKGEYAVRAIKEHKMD-QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSC  542
               +  ++ K +     +   K + Q ++F  ++ +C    +    +             
Sbjct  220  SQKKIDRLEKDDAVNLVLDTIKAEGQCLVFESSRRNCAGFAKTASSKVAKILDNDIMIKL  279

Query  543  VCL---------------------------HGDRKPHERKQNLERFKKGDVRFLICTDVA  575
              +                           H     + RK     F++  ++ +  T   
Sbjct  280  AGIAEEVESTGETDTAIVLANCIRKGVAFHHAGLNSNHRKLVENGFRQNLIKVISSTPTL  339

Query  576  ARGIDIHGVPYVI--------NVTL-PDEKQNYVHRIGRVGR--AERMGLAISLVATEKE  624
            A G+++     +I        N  + P     Y    GR GR   +  G ++ L  T  E
Sbjct  340  AAGLNLPARRVIIRSYRRFDSNFGMQPIPVLEYKQMAGRAGRPHLDPYGESVLLAKTYDE  399


>sp|Q50939|UVRB_NEIGO UvrABC system protein B OS=Neisseria gonorrhoeae 
OX=485 GN=uvrB PE=3 SV=1
Length=675

 Score = 74.4 bits (181),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 59/315 (19%), Positives = 108/315 (34%), Gaps = 53/315 (17%)

Query  434  EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK  493
            E  +P TV     P   + +   + + +    T  V  +   RP A   +     I    
Sbjct  389  EKVMPQTVFVSATPAKYEEEHAGQVVEQVVRPTGLVDPQIIIRPVATQVDDLMSEIND--  446

Query  494  GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
                    +  K ++ ++   TK   + L  Y+ + G              LH D    E
Sbjct  447  --------RIQKGERVLVTTLTKRMAEQLTDYYSELG---------IKVRYLHSDIDTVE  489

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV--HR-----IGRV  606
            R + +   + G    L+  ++   G+DI  V  V  +    +K+ ++  HR     IGR 
Sbjct  490  RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILD--ADKEGFLRSHRSLIQTIGRA  547

Query  607  GRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIE--E  664
             R    G+AI                      Y  ++ +     +   E +   +I+  E
Sbjct  548  AR-NVNGVAI---------------------LYADKITDSMKAAVDETERRREKQIKFNE  585

Query  665  HLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYK-GHVDILAPTVQELAALEKEAQ  723
                   Q++  +K  +D    +   G+ R  G    K G +      ++E+A LEK  Q
Sbjct  586  EHGIVPQQIKKQVKDIIDGVYHEEDSGKGRRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQ  645

Query  724  TSFLHLGYLPNQLFR  738
             +   L +    + R
Sbjct  646  QAARDLQFEEAAVLR  660


>sp|Q9UPY3|DICER_HUMAN Endoribonuclease Dicer OS=Homo sapiens 
OX=9606 GN=DICER1 PE=1 SV=3
Length=1922

 Score = 74.8 bits (182),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 57/326 (17%), Positives = 113/326 (35%), Gaps = 36/326 (11%)

Query  301  QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN  360
            Q    +     + D   L E L++      ++     N  +I V +  R   L+S   L+
Sbjct  249  QPCEIVVDCGPFTDRSGLYERLLM----ELEEALNFINDCNISVHSKERDSTLISKQILS  304

Query  361  LSQVRFLVL-----DEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDV  415
              +   +VL     D+  G++ +    +I     ++          + ++ + T     +
Sbjct  305  DCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEEL--------HRKFLLFTDTFL-RKI  355

Query  416  KKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNT  475
              L E+    P  +DLK        +  ++    P   + +E +   + R  D +   + 
Sbjct  356  HALCEEHF-SPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSD  414

Query  476  RPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQG-GGPD  534
                +  E   E  K      +            IIF   +     L +   + G   P+
Sbjct  415  SEDDDEDEEIEEKEKPETNFPSPFTNILC----GIIFVERRYTAVVLNRLIKEAGKQDPE  470

Query  535  KKGHQFSCVCLHG-DRKP----------HERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
                  + +  HG  +             ++++ L +F+  +   LI T +   G+DI  
Sbjct  471  LAYISSNFITGHGIGKNQPRNKQMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPK  530

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRA  609
               V+   LP E ++YV   GR  RA
Sbjct  531  CNLVVRFDLPTEYRSYVQSKGR-ARA  555


 Score = 38.6 bits (88),  Expect = 0.29, Method: Composition-based stats.
 Identities = 51/284 (18%), Positives = 92/284 (32%), Gaps = 47/284 (17%)

Query  250  PPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQF  309
            P K     L  A D   +   ++G+ +            A+++  ++EL+ Q   +  + 
Sbjct  44   PRKYQVELLEAALDHNTIVCLNTGSGKT---------FIAVLL--TKELSYQIRGDFSRN  92

Query  310  KK---YIDNPKLRELLIIGGVAARDQLSV-----LENGV--------------DIVVGTP  347
             K   ++ N   +    +  V     L V     LE                  +++ T 
Sbjct  93   GKRTVFLVNSANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWNQEFTKHQVLIMTC  152

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
                +++  G L+LS +  LV DE    +       I ++    P           I+  
Sbjct  153  YVALNVLKNGYLSLSDINLLVFDECHLAILDHPYREIMKLCENCPSCPRILGLTASILN-  211

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH--------HVVVPVNPKTDR--LWE  457
                  D ++L EKI      +    E +    V          +VV   P TDR  L+E
Sbjct  212  ---GKCDPEELEEKIQKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGPFTDRSGLYE  268

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI  501
            RL        +     N    +   +    + +IL    AV  +
Sbjct  269  RLLMELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVV  312


>sp|Q9XIF2|MTR4_ARATH DExH-box ATP-dependent RNA helicase DExH9 
OS=Arabidopsis thaliana OX=3702 GN=MTR4 PE=2 SV=1
Length=988

 Score = 74.8 bits (182),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 90/574 (16%), Positives = 164/574 (29%), Gaps = 95/574 (17%)

Query  226  ALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQ---TKF  282
             L P+   K     F F  + F     +    L       +     +G   V        
Sbjct  50   PLAPSVHNKPPAKDFPFTLDSF---QSEAIKCLDNGESVMVSAHTSAGKTVVASYAIAMS  106

Query  283  LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDI  342
            L    + +   P + L+ Q   + K+  ++ D       L+ G V      S L    +I
Sbjct  107  LKENQRVIYTSPIKALSNQKYRDFKE--EFSD-----VGLMTGDVTIDPNASCLVMTTEI  159

Query  343  VVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
                   L  +   G   + +V +++ DE   +                  +    K  +
Sbjct  160  -------LRSMQYKGSEIMREVAWIIFDEVHYMRDSERGVVWEE------SIVMAPKNSR  206

Query  403  VIVCSATLHS-FDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK  461
             +  SAT+ +  +      K+   P  +        P  + H V P       L     K
Sbjct  207  FVFLSATVPNAKEFADWVAKVHQQPCHIVYTDYRPTP--LQHYVFPAGGNGLYLVVD-EK  263

Query  462  SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGE------------YAVRAIKEHKMDQA  509
            S    D      N     N  +   +  K  KG               V+ I + + D  
Sbjct  264  SKFHEDSFQKSLNALVPTNESDKKRDNGKFQKGLVIGKLGEESDIFKLVKMIIQRQYDPV  323

Query  510  IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL------------------------  545
            I+F  +K +C+ L     +     D +      +                          
Sbjct  324  ILFSFSKKECEALAMQMSKMVLNSDDEKDAVETIFASAIDMLSDDDKKLPQVSNILPILK  383

Query  546  ------HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVIN----VTLPD-  594
                  H    P  ++     F++G ++ L  T+  + G+++     V            
Sbjct  384  RGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKF  443

Query  595  ---EKQNYVHRIGRVGRAE--RMGLAISLVATEKE--------KVWYHVCSSRGKGCYNT  641
                   Y+   GR GR    + G+ I +V  + E        K      +S     YN 
Sbjct  444  RWLSSGEYIQMSGRAGRRGIDKRGICILMVDEKMEPAVAKSMLKGSADSLNSAFHLSYNM  503

Query  642  RLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSY  701
             L +          +   S  +   +  I  +E  IK   +E D  V   ++      + 
Sbjct  504  LLNQLRCEEGDPENLLRNSFFQFQADRAIPDLEKQIKSLEEERDSLVIEEEESLKNYYNL  563

Query  702  KGHVDILAPTVQELAALEKEAQTSFLHLGYLPNQ  735
                  L   ++E+    K     +     LPN+
Sbjct  564  ILQYKSLKKDIREIVFTPK-----YCLPFLLPNR  592


>sp|O34942|RECG_BACSU ATP-dependent DNA helicase RecG OS=Bacillus 
subtilis (strain 168) OX=224308 GN=recG PE=3 SV=1
Length=682

 Score = 74.4 bits (181),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 71/466 (15%), Positives = 139/466 (30%), Gaps = 93/466 (20%)

Query  222  MKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTK  281
            +K QA   A   +   ++  F  EE     K     L+ A    + +     ++     +
Sbjct  221  LKMQAFRKAEREQTQGIRQRFSNEELMRFIKSLPFPLTNAQSRVLREITADMSSPYRMNR  280

Query  282  FLP--------------------NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLREL  321
             L                     +  +  ++ P+  LAEQ   +        +   +   
Sbjct  281  LLQGDVGSGKTAVAAIALYAAILSGYQGALMVPTEILAEQ---HADSLVSLFEKWDVSVA  337

Query  322  LIIGGVAARDQLSVLEN----GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLS  377
            L+   V  + +  +LE      +DI+VGT       +   ++    +  ++ DE      
Sbjct  338  LLTSSVKGKRRKELLERLAAGEIDILVGT-----HALIQDEVEFKALSLVITDEQHRFG-  391

Query  378  QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSV  437
                        Q  ++ + G+   V+  +AT                            
Sbjct  392  ----------VEQRKKLRNKGQDPDVLFMTAT----------------------------  413

Query  438  PDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYA  497
                             +   L  +     DV   D    G    E +     +L    A
Sbjct  414  ----------------PIPRTLAITVFGEMDVSVIDEMPAGRKRIETYWVKHDMLDRILA  457

Query  498  VRAIKEHKMDQAIIFCRTKIDCDNLE--QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERK  555
                +  +  QA I C    + D L+            D    +++   +HG     E+ 
Sbjct  458  FVEKELKQGRQAYIICPLIEESDKLDVQNAIDVYNMLSDIFRGKWNVGLMHGKLHSDEKD  517

Query  556  QNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI-GRVGRAERMGL  614
            Q +  F     + L+ T V   G+++     ++         + +H++ GRVGR E    
Sbjct  518  QVMREFSANHCQILVSTTVVEVGVNVPNATIMVIYDADRFGLSQLHQLRGRVGRGEHQSF  577

Query  615  AISLVATEKE--KVWYHVCSSRGKGCYNTRLK-EDGGCTIWYNEMQ  657
             I +   + E  K    + S    G   +    E  G   ++ + Q
Sbjct  578  CILMADPKSETGKERMRIMSETNDGFELSEKDLELRGPGDFFGKKQ  623


>sp|Q5F931|UVRB_NEIG1 UvrABC system protein B OS=Neisseria gonorrhoeae 
(strain ATCC 700825 / FA 1090) OX=242231 GN=uvrB PE=3 
SV=1
Length=675

 Score = 74.4 bits (181),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 59/315 (19%), Positives = 108/315 (34%), Gaps = 53/315 (17%)

Query  434  EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK  493
            E  +P TV     P   + +   + + +    T  V  +   RP A   +     I    
Sbjct  389  EKVMPQTVFVSATPAKYEEEHAGQVVEQVVRPTGLVDPQTIIRPVATQVDDLMSEIND--  446

Query  494  GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
                    +  K ++ ++   TK   + L  Y+ + G              LH D    E
Sbjct  447  --------RIQKGERVLVTTLTKRMAEQLTDYYSELG---------IKVRYLHSDIDTVE  489

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV--HR-----IGRV  606
            R + +   + G    L+  ++   G+DI  V  V  +    +K+ ++  HR     IGR 
Sbjct  490  RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILD--ADKEGFLRSHRSLIQTIGRA  547

Query  607  GRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIE--E  664
             R    G+AI                      Y  ++ +     +   E +   +I+  E
Sbjct  548  AR-NVNGVAI---------------------LYADKITDSMKAAVDETERRREKQIKFNE  585

Query  665  HLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYK-GHVDILAPTVQELAALEKEAQ  723
                   Q++  +K  +D    +   G+ R  G    K G +      ++E+A LEK  Q
Sbjct  586  EHGIVPQQIKKQVKDIIDGVYHEEDSGKGRRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQ  645

Query  724  TSFLHLGYLPNQLFR  738
             +   L +    + R
Sbjct  646  QAARDLQFEEAAVLR  660


>sp|Q4WKB5|MPH1_ASPFU ATP-dependent DNA helicase mph1 OS=Aspergillus 
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 
/ Af293) OX=330879 GN=mph1 PE=3 SV=1
Length=1101

 Score = 74.8 bits (182),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 34/181 (19%), Positives = 63/181 (35%), Gaps = 9/181 (5%)

Query  508  QAIIFCRTKIDCDNLEQYFIQQGG--GPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
            + +IF   +   + + +   +      P     Q S     G      +   +++FKKG 
Sbjct  662  RIMIFVHFRDSAEEVVRVLKRHEPLIRPHVFVGQSSAKGSEG-MDQKTQLSIVQKFKKGT  720

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
               ++ T +   G+DI  V  ++           + R+GR GR  R G  + L+   KE+
Sbjct  721  YNTIVATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGRK-RAGNIVLLLMQGKEE  779

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEH-LNCTISQVEPDIKVPVDEF  684
              Y     + K  Y    +     T +         I    +     + + DI V   + 
Sbjct  780  ESY----IKAKDNYEKMQQMIASGTRFTFHDDKSPRILPPGVRPVAEKRQIDIPVENTQA  835

Query  685  D  685
            D
Sbjct  836  D  836


 Score = 38.2 bits (87),  Expect = 0.38, Method: Composition-based stats.
 Identities = 25/157 (16%), Positives = 59/157 (38%), Gaps = 12/157 (8%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + + V P++ L  Q ++   Q       P+    ++ G  A   +    ++   +   TP
Sbjct  334  QIIFVAPTKPLVAQQISACFQVA---GIPRSETTMLTGEAAPGIRAEEWKSK-RVFFMTP  389

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
              L + + +G  +  ++  LV+DEA           + +   +        K  +V+  +
Sbjct  390  QTLVNDLKSGIADPKRIVLLVVDEAHRATGGYAYVEVVKFLKR------YNKSFRVLALT  443

Query  408  ATLHS--FDVKKLSEKIMHFPTWVDLKGEDSVPDTVH  442
            AT  S    V+ + + +      +  +    + + VH
Sbjct  444  ATPGSTVESVQAIIDDLGIAKVEIRTEQSLDIREYVH  480


>sp|B0XMV6|MPH1_ASPFC ATP-dependent DNA helicase mph1 OS=Aspergillus 
fumigatus (strain CBS 144.89 / FGSC A1163 / CEA10) OX=451804 
GN=mph1 PE=3 SV=1
Length=1101

 Score = 74.8 bits (182),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 34/181 (19%), Positives = 63/181 (35%), Gaps = 9/181 (5%)

Query  508  QAIIFCRTKIDCDNLEQYFIQQGG--GPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
            + +IF   +   + + +   +      P     Q S     G      +   +++FKKG 
Sbjct  662  RIMIFVHFRDSAEEVVRVLKRHEPLIRPHVFVGQSSAKGSEG-MDQKTQLSIVQKFKKGT  720

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
               ++ T +   G+DI  V  ++           + R+GR GR  R G  + L+   KE+
Sbjct  721  YNTIVATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGRK-RAGNIVLLLMQGKEE  779

Query  626  VWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEH-LNCTISQVEPDIKVPVDEF  684
              Y     + K  Y    +     T +         I    +     + + DI V   + 
Sbjct  780  ESY----IKAKDNYEKMQQMIASGTRFTFHDDKSPRILPPGVRPVAEKRQIDIPVENTQA  835

Query  685  D  685
            D
Sbjct  836  D  836


 Score = 38.2 bits (87),  Expect = 0.38, Method: Composition-based stats.
 Identities = 25/157 (16%), Positives = 59/157 (38%), Gaps = 12/157 (8%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + + V P++ L  Q ++   Q       P+    ++ G  A   +    ++   +   TP
Sbjct  334  QIIFVAPTKPLVAQQISACFQVA---GIPRSETTMLTGEAAPGIRAEEWKSK-RVFFMTP  389

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
              L + + +G  +  ++  LV+DEA           + +   +        K  +V+  +
Sbjct  390  QTLVNDLKSGIADPKRIVLLVVDEAHRATGGYAYVEVVKFLKR------YNKSFRVLALT  443

Query  408  ATLHS--FDVKKLSEKIMHFPTWVDLKGEDSVPDTVH  442
            AT  S    V+ + + +      +  +    + + VH
Sbjct  444  ATPGSTVESVQAIIDDLGIAKVEIRTEQSLDIREYVH  480


>sp|A7IB61|HELS_METB6 ATP-dependent DNA helicase Hel308 OS=Methanoregula 
boonei (strain DSM 21154 / JCM 14090 / 6A8) OX=456442 
GN=hel308 PE=3 SV=1
Length=723

 Score = 74.4 bits (181),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 70/410 (17%), Positives = 127/410 (31%), Gaps = 89/410 (22%)

Query  256  VALSKAPDGYIVKSQHSGNAQVTQT---KFLPNAPKALIVEPSRELAEQTLNNIKQFKKY  312
              L    +  +     SG   + +    + + N  K L + P + LA +           
Sbjct  34   RGLLDGKNLLVAIPTASGKTLIAEMAMHRHIANGGKCLYIVPLKALASEKYEEF------  87

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA  372
              N  ++  L  G +  RD    L    DI+V T  ++D L+  G   +  +  +V+DE 
Sbjct  88   -GNKGVKVGLSTGDLDRRDDA--LGKN-DIIVATSEKVDSLLRNGARWIPDITLVVIDEI  143

Query  373  DGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK  432
              + S      +  +   I ++ S    +Q+I  SAT+ +  V                 
Sbjct  144  HLIDSPDRGPTLEMV---IAKMRSKNPGMQLIGLSATIGNPKVL----------------  184

Query  433  GEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKIL  492
                                  L   L  S  R  D+             E      ++ 
Sbjct  185  -------------------AGWLDAELVTSSWRPVDLRQGVFYDNRIQFAERMRPVKQVS  225

Query  493  KGEYAVRAIKEH--KMDQAIIFCRTKIDCDNLEQ-----------------YFIQQGGGP  533
            K    +    +   +  Q ++F  ++ + +   +                   + +G   
Sbjct  226  KNYDDLNLCLDTIAEGGQCLVFVSSRRNAEAFAKRAAGAIKSEDAALAACAERLLEGTPT  285

Query  534  DKKGHQFSCVCL-----HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVI  588
            +      +CV       H      ER    E F+K  ++ +  T   A G+++     VI
Sbjct  286  EMVKTLAACVAKGAAFHHAGLSRKERSIVEEAFRKNLLKCISSTPTLAAGLNLPA-RRVI  344

Query  589  NVTL----------PDEKQNYVHRIGRVG--RAERMGLAISLVATEKEKV  626
                          P     Y    GR G  R +  G A+ L+A E E+V
Sbjct  345  IRDYLRFSAGEGMQPIPVSEYRQMAGRAGRPRLDPYGEAV-LIAKEAEQV  393


>sp|O75417|DPOLQ_HUMAN DNA polymerase theta OS=Homo sapiens OX=9606 
GN=POLQ PE=1 SV=2
Length=2590

 Score = 74.8 bits (182),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 58/401 (14%), Positives = 127/401 (32%), Gaps = 41/401 (10%)

Query  309  FKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP----GRLDDLVSTGKLNLSQV  364
             +       ++    +G  +     S L    DI V T     G ++ L+   K++L  +
Sbjct  157  LQSLFQEVGIKVDGYMGSTSPSRHFSSL----DIAVCTIERANGLINRLIEENKMDL--L  210

Query  365  RFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV------------CSATLHS  412
              +V+DE   L        +  +  +I  +T      Q  +             SATL +
Sbjct  211  GMVVVDELHMLGDSHRGYLLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPN  270

Query  413  FDV-------KKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             ++       +         P    +K  +S+ D+   +V    P      +      + 
Sbjct  271  LELVASWLNAELYHTDFRPVPLLESVKVGNSIYDSSMKLVREFEPMLQVKGDEDHVVSLC  330

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEY------AVRAIKEHKMDQAIIFCRTKIDC  519
             + +    +      S +   +   I+  E+      A   +K  +    I+  +  ++ 
Sbjct  331  YETICDNHSVLLFCPSKKWCEKLADIIAREFYNLHHQAEGLVKPSECPPVILEQKELLEV  390

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
             +  +          +K   +     H      ER      F++G +R L  T   + G+
Sbjct  391  MDQLRRLPSGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGV  450

Query  580  DIHGVPYVINVTL----PDEKQNYVHRIGRVGRAE--RMGLAISLVATEKEKVWYHVCSS  633
            ++     +I   +    P +   Y   +GR GR     +G +I +    ++     +   
Sbjct  451  NLPARRVIIRTPIFGGRPLDILTYKQMVGRAGRKGVDTVGESILICKNSEKSKGIALLQG  510

Query  634  RGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVE  674
              K   +   + +G          +L  I   +  T   + 
Sbjct  511  SLKPVRSCLQRREGEEVTGSMIRAILEIIVGGVASTSQDMH  551


 Score = 39.0 bits (89),  Expect = 0.23, Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query  8    GVMPEIAQAVEEMDWLLPTDIQAESIPL--ILGGGDVLMAAETGSGKTGAFSIPVIQIVY  65
            G+   + +           + QAE + L  +L G +++ +A T +GKT    + +++ V 
Sbjct  75   GLPKAVLEKYHSFGVKKMFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVL  134

Query  66   ETLKD  70
            E  K 
Sbjct  135  EMRKK  139


>sp|O33395|UVRB_NEIMB UvrABC system protein B OS=Neisseria meningitidis 
serogroup B (strain MC58) OX=122586 GN=uvrB PE=3 SV=3
Length=675

 Score = 74.0 bits (180),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 54/312 (17%), Positives = 101/312 (32%), Gaps = 47/312 (15%)

Query  434  EDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK  493
            E  +P T+     P   + +   + + +    T  V  +   RP A   +     I    
Sbjct  389  EKVMPQTIFVSATPAKYEEEHAGQVVEQVVRPTGLVDPQIIIRPVATQVDDLMSEIND--  446

Query  494  GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
                    +  K ++ ++   TK   + L  Y+ + G              LH D    E
Sbjct  447  --------RIEKGERVLVTTLTKRMAEQLTDYYSELG---------IKVRYLHSDIDTVE  489

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV--HR-----IGRV  606
            R + +   + G    L+  ++   G+DI  V  V  +    +K+ ++  HR     IGR 
Sbjct  490  RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILD--ADKEGFLRSHRSLIQTIGRA  547

Query  607  GRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHL  666
             R    G+AI             +  S       T  + +        +  +  +I++ +
Sbjct  548  AR-NVNGVAILYAD--------KITDSMKAAIDETERRREKQIKFNEEQGIVPQQIKKQV  598

Query  667  NCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKEAQTSF  726
               I  V  +         GK               G +      ++E+A LEK  Q + 
Sbjct  599  KDIIDGVYHEEDGSKGRLKGKNK----------VKVGEIHNEEDAIKEIAKLEKAMQQAA  648

Query  727  LHLGYLPNQLFR  738
              L +    + R
Sbjct  649  RDLQFEEAAVLR  660


>sp|P9WMQ7|RECG_MYCTU ATP-dependent DNA helicase RecG OS=Mycobacterium 
tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=recG 
PE=3 SV=1
Length=737

 Score = 74.0 bits (180),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 67/415 (16%), Positives = 133/415 (32%), Gaps = 64/415 (15%)

Query  219  PPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN---A  275
                K+  L  A +L+    +   G+ E      DG +A ++  +  +     SG    A
Sbjct  268  SAAWKSNGL-AAELLRRLPFELTAGQREVLDVLSDG-LAANRPLNRLLQGEVGSGKTIVA  325

Query  276  QVTQTKFLPNAPKALIVEPSRELAEQ----TLNNIKQFKKYIDNPK----LRELLIIG--  325
             +   + +    +  ++ P+  LA Q      + +                R  L+ G  
Sbjct  326  VLAMLQMVDAGYQCALLAPTEVLAAQHLRSIRDVLGPLAMGGQLGGAENATRVALLTGSM  385

Query  326  --GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDF  383
              G   + +  +    V IV+GT       +    ++   +  +V+DE       G    
Sbjct  386  TAGQKKQVRAEIASGQVGIVIGT-----HALLQEAVDFHNLGMVVVDEQHRF---GVEQ-  436

Query  384  INRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHH  443
                 +Q+      G    ++V +AT                           +P TV  
Sbjct  437  ----RDQLRAKAPAGITPHLLVMTAT--------------------------PIPRTVAL  466

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
             V      +      LG+  I T+ +  KD       +     E     +  Y V    +
Sbjct  467  TVYGDLETSTLRELPLGRQPIATNVIFVKDKPAWLDRAWRRIIEEAAAGRQAYVVAPRID  526

Query  504  HKMDQAIIF-CRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
               D  +    R     + L             +  +     +HG     ++   +  F+
Sbjct  527  ESDDTDVQGGVRPSATAEGLFSRLR------SAELAELRLALMHGRLSADDKDAAMAAFR  580

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI-GRVGRAERMGLAI  616
             G+V  L+CT V   G+D+     ++ +       + +H++ GR+GR E   + +
Sbjct  581  AGEVDVLVCTTVIEVGVDVPNATVMLVMDADRFGISQLHQLRGRIGRGEHPSVCL  635


>sp|P9WMQ6|RECG_MYCTO ATP-dependent DNA helicase RecG OS=Mycobacterium 
tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=recG 
PE=3 SV=1
Length=737

 Score = 74.0 bits (180),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 67/415 (16%), Positives = 133/415 (32%), Gaps = 64/415 (15%)

Query  219  PPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN---A  275
                K+  L  A +L+    +   G+ E      DG +A ++  +  +     SG    A
Sbjct  268  SAAWKSNGL-AAELLRRLPFELTAGQREVLDVLSDG-LAANRPLNRLLQGEVGSGKTIVA  325

Query  276  QVTQTKFLPNAPKALIVEPSRELAEQ----TLNNIKQFKKYIDNPK----LRELLIIG--  325
             +   + +    +  ++ P+  LA Q      + +                R  L+ G  
Sbjct  326  VLAMLQMVDAGYQCALLAPTEVLAAQHLRSIRDVLGPLAMGGQLGGAENATRVALLTGSM  385

Query  326  --GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDF  383
              G   + +  +    V IV+GT       +    ++   +  +V+DE       G    
Sbjct  386  TAGQKKQVRAEIASGQVGIVIGT-----HALLQEAVDFHNLGMVVVDEQHRF---GVEQ-  436

Query  384  INRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHH  443
                 +Q+      G    ++V +AT                           +P TV  
Sbjct  437  ----RDQLRAKAPAGITPHLLVMTAT--------------------------PIPRTVAL  466

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
             V      +      LG+  I T+ +  KD       +     E     +  Y V    +
Sbjct  467  TVYGDLETSTLRELPLGRQPIATNVIFVKDKPAWLDRAWRRIIEEAAAGRQAYVVAPRID  526

Query  504  HKMDQAIIF-CRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
               D  +    R     + L             +  +     +HG     ++   +  F+
Sbjct  527  ESDDTDVQGGVRPSATAEGLFSRLR------SAELAELRLALMHGRLSADDKDAAMAAFR  580

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI-GRVGRAERMGLAI  616
             G+V  L+CT V   G+D+     ++ +       + +H++ GR+GR E   + +
Sbjct  581  AGEVDVLVCTTVIEVGVDVPNATVMLVMDADRFGISQLHQLRGRIGRGEHPSVCL  635


>sp|P64323|RECG_MYCBO ATP-dependent DNA helicase RecG OS=Mycobacterium 
bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=recG 
PE=3 SV=1
Length=737

 Score = 74.0 bits (180),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 67/415 (16%), Positives = 133/415 (32%), Gaps = 64/415 (15%)

Query  219  PPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGN---A  275
                K+  L  A +L+    +   G+ E      DG +A ++  +  +     SG    A
Sbjct  268  SAAWKSNGL-AAELLRRLPFELTAGQREVLDVLSDG-LAANRPLNRLLQGEVGSGKTIVA  325

Query  276  QVTQTKFLPNAPKALIVEPSRELAEQ----TLNNIKQFKKYIDNPK----LRELLIIG--  325
             +   + +    +  ++ P+  LA Q      + +                R  L+ G  
Sbjct  326  VLAMLQMVDAGYQCALLAPTEVLAAQHLRSIRDVLGPLAMGGQLGGAENATRVALLTGSM  385

Query  326  --GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDF  383
              G   + +  +    V IV+GT       +    ++   +  +V+DE       G    
Sbjct  386  TAGQKKQVRAEIASGQVGIVIGT-----HALLQEAVDFHNLGMVVVDEQHRF---GVEQ-  436

Query  384  INRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHH  443
                 +Q+      G    ++V +AT                           +P TV  
Sbjct  437  ----RDQLRAKAPAGITPHLLVMTAT--------------------------PIPRTVAL  466

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
             V      +      LG+  I T+ +  KD       +     E     +  Y V    +
Sbjct  467  TVYGDLETSTLRELPLGRQPIATNVIFVKDKPAWLDRAWRRIIEEAAAGRQAYVVAPRID  526

Query  504  HKMDQAIIF-CRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
               D  +    R     + L             +  +     +HG     ++   +  F+
Sbjct  527  ESDDTDVQGGVRPSATAEGLFSRLR------SAELAELRLALMHGRLSADDKDAAMAAFR  580

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI-GRVGRAERMGLAI  616
             G+V  L+CT V   G+D+     ++ +       + +H++ GR+GR E   + +
Sbjct  581  AGEVDVLVCTTVIEVGVDVPNATVMLVMDADRFGISQLHQLRGRIGRGEHPSVCL  635


>sp|P75558|UVRB_MYCPN UvrABC system protein B OS=Mycoplasma pneumoniae 
(strain ATCC 29342 / M129 / Subtype 1) OX=272634 GN=uvrB 
PE=3 SV=1
Length=657

 Score = 74.0 bits (180),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 87/251 (35%), Gaps = 22/251 (9%)

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMD-QAIIFCRTK  516
            R  +  +  ++V  +         PE+  +       +     I + K + +  +   T 
Sbjct  401  REEEIQLSHNNVVEQLVRPTYLLDPEVIVKPKDNQVEDLVSEIINQRKHNGRTFVTVLTI  460

Query  517  IDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAA  576
               +NL  +  ++               +H D K  ER   L   +KG+   L+  ++  
Sbjct  461  KMAENLTDFLKER---------NIKVAYIHKDIKALERLILLTDLRKGEYECLVGINLLR  511

Query  577  RGIDIHGVPYVINVT-----LPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVC  631
             G+D+  V  V         LP ++++ +  IGR  R    G  I    T  E++   + 
Sbjct  512  EGLDVPEVSLVAIFDADIPGLPRDERSLIQIIGRAAR-NVHGRVIMYANTISEQMDKAIK  570

Query  632  SSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYG  691
             ++ +        E       +++  +  +    LN  I       +        ++T  
Sbjct  571  ETQRRRTIQMAYNEQ------HHKTPMTVQKPITLNQPIKLKTKSSEQQKAALIKQLTKE  624

Query  692  QKRAAGGGSYK  702
             K+AA   +Y+
Sbjct  625  MKQAAANQNYE  635


>sp|B0SLS0|UVRB_LEPBP UvrABC system protein B OS=Leptospira biflexa 
serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) OX=456481 
GN=uvrB PE=3 SV=1
Length=664

 Score = 74.0 bits (180),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 59/355 (17%), Positives = 111/355 (31%), Gaps = 51/355 (14%)

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            P  L D              L++DE+   L       I  M+        D  R Q +V 
Sbjct  320  PACLLDYFPGKDF------LLIIDESHVTL-----PQIGGMY------AGDRSRKQTLVE  362

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
                       L  + ++F  +     E   P T++    P   + ++      +    T
Sbjct  363  ---FGFRLPSALDNRPLNFTEF-----EAMTPRTLYVSATPDQNELNKSEAVFEQIIRPT  414

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
              +      RP  N  E     I+          ++ ++ ++ +I   TK   ++L  Y+
Sbjct  415  GLLDPVVEVRPTTNQIEDLLNEIR----------LRINQKERVLITTLTKKMSEDLTDYY  464

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
             + G              LH +    ER + +   +KG    ++  ++   G+DI  V  
Sbjct  465  KEVG---------LKIAYLHSEIDTIERTEIIRDLRKGVYDCIVGINLLREGLDIPEVSL  515

Query  587  VINVT-----LPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
            V  +           ++ V  IGR  R    G AI       + +   +  +  +     
Sbjct  516  VAILDADKEGFLRNYKSLVQTIGRAAR-NVNGKAILYADRMTDSIKKAMSETERRRLIQE  574

Query  642  RLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAA  696
               E  G T    + + + +I           E  +K    EF  K    + +  
Sbjct  575  AHNEKMGITPQTIQKE-IHDILPREMAEEDSKEEALKDLEKEFTLKKYKTKDKLR  628


>sp|B0SDE2|UVRB_LEPBA UvrABC system protein B OS=Leptospira biflexa 
serovar Patoc (strain Patoc 1 / Ames) OX=355278 GN=uvrB 
PE=3 SV=1
Length=664

 Score = 74.0 bits (180),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 59/355 (17%), Positives = 111/355 (31%), Gaps = 51/355 (14%)

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            P  L D              L++DE+   L       I  M+        D  R Q +V 
Sbjct  320  PACLLDYFPGKDF------LLIIDESHVTL-----PQIGGMY------AGDRSRKQTLVE  362

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
                       L  + ++F  +     E   P T++    P   + ++      +    T
Sbjct  363  ---FGFRLPSALDNRPLNFTEF-----EAMTPRTLYVSATPDQNELNKSEAVFEQIIRPT  414

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
              +      RP  N  E     I+          ++ ++ ++ +I   TK   ++L  Y+
Sbjct  415  GLLDPVVEVRPTTNQIEDLLNEIR----------LRINQKERVLITTLTKKMSEDLTDYY  464

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
             + G              LH +    ER + +   +KG    ++  ++   G+DI  V  
Sbjct  465  KEVG---------LKIAYLHSEIDTIERTEIIRDLRKGVYDCIVGINLLREGLDIPEVSL  515

Query  587  VINVT-----LPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNT  641
            V  +           ++ V  IGR  R    G AI       + +   +  +  +     
Sbjct  516  VAILDADKEGFLRNYKSLVQTIGRAAR-NVNGKAILYADRMTDSIKKAMSETERRRLIQE  574

Query  642  RLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAA  696
               E  G T    + + + +I           E  +K    EF  K    + +  
Sbjct  575  AHNEKMGITPQTIQKE-IHDILPREMAEEDSKEEALKDLEKEFTLKKYKTKDKLR  628


>sp|Q9U2G0|U520_CAEEL U5 small nuclear ribonucleoprotein 200 kDa 
helicase OS=Caenorhabditis elegans OX=6239 GN=snrp-200 PE=3 
SV=1
Length=2145

 Score = 74.4 bits (181),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 66/438 (15%), Positives = 133/438 (30%), Gaps = 57/438 (13%)

Query  254  GFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI  313
                  K     +   Q  GN          +  K + + P + L       +  F K +
Sbjct  497  APTGAGKTNVALLTMLQEIGNHLAEDGSVKLDEFKIVYIAPMKSL---VQEMVGSFSKRL  553

Query  314  DNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQ--VRFLVLDE  371
                +    + G      +  +      ++V TP + D +   G        VR L++DE
Sbjct  554  APFGITVGEMTGDAQMSKEQFM---ATQVIVCTPEKYDVVTRKGGERAYNQMVRLLIIDE  610

Query  372  ADGLLSQGYSDFINRMH-NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVD  430
               LL       +  +    I Q+  +    +++  SATL ++  + ++  +   P  + 
Sbjct  611  IH-LLHDDRGPVLESIVVRTIRQMEQNHDECRLVGLSATLPNY--QDVATFLRVKPEHLH  667

Query  431  LKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIK  490
                   P  +    + V  K     + L +     + V+ K     G +   ++  + K
Sbjct  668  FFDNSYRPVPLEQQYIGVTEK-----KALKRFQAMNEVVYDKIMEHAGKSQVLVFVHSRK  722

Query  491  ILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLH-GDR  549
                          + D    F R       + +   +Q    D K        +H    
Sbjct  723  ETAKTAKAIRDACLEKDTLSAFMREGSASTEILRTEAEQAKNLDLKDLLPYGFAIHHAGM  782

Query  550  KPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR----  605
               +R    + F    ++ L  T   A G+++     +I        Q Y    GR    
Sbjct  783  NRVDRTLVEDLFADRHIQVLFSTATLAWGVNLPAHTVII-----KGTQIYNPEKGRWTEL  837

Query  606  --------VGRAER-----MGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIW  652
                    +GRA R      G  I +    + + +  + + +                  
Sbjct  838  GALDIMQMLGRAGRPQYDDRGEGILITNHSELQYYLSLMNQQ-----------------L  880

Query  653  YNEMQLLSEIEEHLNCTI  670
              E Q++S + + LN  +
Sbjct  881  PVESQMVSRLTDMLNAEV  898


>sp|F0NDL2|HELS_SULIR ATP-dependent DNA helicase Hel308 OS=Sulfolobus 
islandicus (strain REY15A) OX=930945 GN=hel308 PE=1 
SV=1
Length=715

 Score = 74.0 bits (180),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 69/364 (19%), Positives = 130/364 (36%), Gaps = 47/364 (13%)

Query  283  LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDI  342
            L N  KA+ V P R L   T      FK + ++   +  +  G     D  + L+N  DI
Sbjct  72   LKNGGKAIYVTPLRAL---TNEKYLTFKDW-ESIGFKVAMTSGDYDTDD--AWLKN-YDI  124

Query  343  VVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            ++ T  +LD L       L++  + VLDE   L        +  +       T   KR  
Sbjct  125  IITTYEKLDSLWRHRPDWLNEANYFVLDELHYLNDPERGPVVESV-------TIRAKRRN  177

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
            ++  SAT+ ++  K++++ +   P   + +        V  +   + P+  +    +   
Sbjct  178  LLALSATISNY--KQIAKWLGAEPVATNWRP-------VPLMEGVMYPERKKKEYTILFR  228

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC--D  520
               T  VH  D            +  + + +    +      K+   + F         +
Sbjct  229  DNTTRKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDEKAISE  288

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCL-----HGDRKPHERKQNLERFKKGDVRFLICTDVA  575
             L Q    + GG D+K    S +       H       R    E F+K  ++ ++ T   
Sbjct  289  ILNQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDIIEESFRKRKIKVIVATPTL  348

Query  576  ARGIDIHGVPYVI------N------VT-LPDEKQNYVHRIGRVGRAE--RMGLAISLVA  620
            A G+++     +I      N         +P     Y    GR GR    ++G +I +V 
Sbjct  349  AAGVNLPARTVIIGDIYRFNRKIVGYYDEIP--VMEYKQMSGRAGRPGFDQIGESIIVVR  406

Query  621  TEKE  624
             +++
Sbjct  407  DKED  410


 Score = 42.0 bits (97),  Expect = 0.023, Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 29/66 (44%), Gaps = 1/66 (2%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPL-ILGGGDVLMAAETGSGKTGAFSIPVI  61
           +  ++ +   +   ++          Q E++   +L G  +L+ + TGSGKT    + +I
Sbjct  9   SIDDLKLPSNVIDIIKNRGIKKLNPPQTEAVKKGLLDGNRLLLTSPTGSGKTLIAEMGII  68

Query  62  QIVYET  67
             + + 
Sbjct  69  SFLLKN  74


>sp|Q8ENJ5|UVRB_OCEIH UvrABC system protein B OS=Oceanobacillus 
iheyensis (strain DSM 14371 / CIP 107618 / JCM 11309 / KCTC 
3954 / HTE831) OX=221109 GN=uvrB PE=3 SV=1
Length=660

 Score = 73.6 bits (179),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 60/343 (17%), Positives = 111/343 (32%), Gaps = 52/343 (15%)

Query  367  LVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFP  426
            +++DE+   L       I  M N       D  R QV+V          + L   + + P
Sbjct  335  VIIDESHVTL-----PQIRGMFN------GDQARKQVLV------DHGFR-LPSAMDNRP  376

Query  427  TWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWS  486
                 + ED     V+    P   + +   E   +    T  +  K   RP     +   
Sbjct  377  LRFQ-EFEDKTKQLVYVSATPGPYELEHSPEMTEQIIRPTGLLDPKVEVRPIEGQIDNLI  435

Query  487  EAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLH  546
            E I+          I+  K ++ +I   TK   ++L  Y  + G              LH
Sbjct  436  EEIR----------IRMEKNERVLITTLTKKMSEDLTDYLKEIG---------MKVAYLH  476

Query  547  GDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT-----LPDEKQNYVH  601
             + K  ER + +   + G    L+  ++   G+DI  V  V  +          +++ + 
Sbjct  477  SEIKTLERIEVIRDLRVGKFDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSERSLIQ  536

Query  602  RIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSE  661
             +GR  R    G  I       + +   +  +  +    T   E  G T      ++   
Sbjct  537  TMGRAAR-NENGKVIMYADKMTDSMKKAIDETNRRRTIQTEYNEQHGITPKTIRKEVRDV  595

Query  662  IE--------EHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAA  696
            I+        E       Q+    K   ++   ++    K+AA
Sbjct  596  IKATTAAEETESYEPKTKQINKMTKKEREKVIEQMENEMKQAA  638


>sp|Q57828|CS3HE_METJA CRISPR-associated helicase Cas3 OS=Methanocaldococcus 
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 
/ JCM 10045 / NBRC 100440) OX=243232 GN=cas3 PE=3 SV=1
Length=614

 Score = 73.6 bits (179),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 73/402 (18%), Positives = 138/402 (34%), Gaps = 51/402 (13%)

Query  286  APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG  345
             P+ + V P+R L       +++ + Y     ++++L I G +      + +  V +  G
Sbjct  65   VPRLIYVLPTRSL---VEKQVERIRNY-----IKKILEIKGYSKDKVEELAKKIVQVEYG  116

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
                   L  T       + F+VL   D  L   Y    +R                ++V
Sbjct  117  -------LEETHAF----LGFVVLTTWDTFL---YGLAAHRTVGDRFTFPCGAIAQSLVV  162

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
                    +++   ++ ++ P  + L  +  V   V  V +     T+ L + LG     
Sbjct  163  F------DEIQMYQDESLYMPRLIGLVVKRLVEANVPLVFMTATLPTE-LKKILGIHDEE  215

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE--HKMDQAIIFCRTKIDCDNLE  523
               V+ +D  +P     E+  E  + L  E     IK+  ++  + +I   T      + 
Sbjct  216  PITVNPEDTKKP--ERGEVVVEFKEKLSDEELSNEIKKAINEGKKVLIIKNTVNSAIEVY  273

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
            +   Q G          + + LH      +R +  +         ++ T V   G+D+  
Sbjct  274  EKVKQLG----------NSLLLHSRFTVEDRAEKEKDI--DKAEIIVATQVVEAGLDLTN  321

Query  584  VPYVINVTLPDEKQNYVHRIGRVGRA-ERMGLAISLVATEKEKVWYHVCSSRGKGCYNTR  642
            V  VI   L       + RIGR  R     G  I ++    EK+          G  N  
Sbjct  322  VGLVIT-DLAP-LDALIQRIGRCARRKGERGKVIVVLPNFNEKINEDHREKVILGFKNIP  379

Query  643  LKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEF  684
              E+   T+  N+      + E    TI + +   K+   +F
Sbjct  380  F-ENAYVTLVNNKD--YGRVIELTIETIEEKKGKSKIVPKKF  418


>sp|A3GH78|MPH1_PICST ATP-dependent DNA helicase MPH1 OS=Scheffersomyces 
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 
/ NRRL Y-11545) OX=322104 GN=MPH1 PE=3 SV=3
Length=1050

 Score = 74.0 bits (180),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 20/85 (24%), Positives = 37/85 (44%), Gaps = 1/85 (1%)

Query  548  DRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVG  607
                  +K+ ++ FK+G    L+ T +   G+DI  V  +I           + R+GR G
Sbjct  525  GMNQKLQKEIIKNFKQGTYNILVATSIGEEGLDIGEVDLIICYDSTSSPIKNIQRMGRTG  584

Query  608  RAERMGLAISLVATEKEKVWYHVCS  632
            R  R G  + L ++ +E  +    +
Sbjct  585  RK-RDGKVVLLFSSNEESKFDKAMN  608


 Score = 38.2 bits (87),  Expect = 0.36, Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 67/156 (43%), Gaps = 14/156 (9%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR  349
            + V P++ L  Q    IK        P  +  +++     R     + +   +   TP  
Sbjct  135  IFVAPTKPLVAQ---QIKACCSITGIPSSKVAILL--DKTRKNRGEIWDEKQVFFTTPQV  189

Query  350  LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSAT  409
            +++ +++G ++   +  LV+DEA         + I +  ++           +++  +AT
Sbjct  190  VENDLASGLVDPKTIALLVIDEAHRAKGNYAYNNIVKFMDRF------TNSYRILALTAT  243

Query  410  LHSFDVKKLSEKIMH-FPTWVDLKGEDSVPDTVHHV  444
              + DV  + E I +   + V+++ E+S+ D + ++
Sbjct  244  -PASDVDGVQEIIDNLNISKVEVRSEESI-DIIKYM  277


>sp|Q97VY9|HELS_SACS2 ATP-dependent DNA helicase Hel308 OS=Saccharolobus 
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 
11322 / P2) OX=273057 GN=hel308 PE=3 SV=1
Length=708

 Score = 73.6 bits (179),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 62/364 (17%), Positives = 122/364 (34%), Gaps = 47/364 (13%)

Query  283  LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDI  342
            L N  KA+ V P R L   T      FK + ++   +  +  G     D  + L+N  DI
Sbjct  65   LKNGGKAIYVTPLRAL---TNEKYLTFKDW-ESIGFKVAMTSGDYDTDD--AWLKN-YDI  117

Query  343  VVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ  402
            ++ T  +LD L       L++  + VLDE   L        +  +       T   KR  
Sbjct  118  IITTYEKLDSLWRHRPDWLNEANYFVLDELHYLNDPERGPVVESV-------TIRAKRRN  170

Query  403  VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKS  462
            ++  SAT+ ++  K++++ +   P   + +        V  +   + P+  +    +   
Sbjct  171  LLALSATISNY--KQIAKWLGAEPVATNWRP-------VPLMEGVMYPERKKKEYTILFR  221

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC-DN  521
                  VH  D            +  + + +    +      K+   + F          
Sbjct  222  DNTARKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDEKAISE  281

Query  522  LEQYFIQQGGGPDKKGHQFS------CVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA  575
            + +       G   +               H       R    E F+K  ++ ++ T   
Sbjct  282  ILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDIIEESFRKRKIKVIVATPTL  341

Query  576  ARGIDIHGVPYVI------N------VT-LPDEKQNYVHRIGRVGRAE--RMGLAISLVA  620
            A G+++     +I      N         +P     Y    GR GR    ++G +I +V 
Sbjct  342  AAGVNLPARTVIIGDIYRFNRKIVGYYDEIP--VMEYKQMSGRAGRPGFDQIGESIIVVR  399

Query  621  TEKE  624
             +++
Sbjct  400  DKED  403


 Score = 42.0 bits (97),  Expect = 0.023, Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 29/66 (44%), Gaps = 1/66 (2%)

Query  3   AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPL-ILGGGDVLMAAETGSGKTGAFSIPVI  61
           +  ++ +   +   ++          Q E++   +L G  +L+ + TGSGKT    + +I
Sbjct  2   SIDDLKLPSNVIDIIKNRGIKKLNPPQTEAVKKGLLDGNRLLLTSPTGSGKTLIAEMGII  61

Query  62  QIVYET  67
             + + 
Sbjct  62  SFLLKN  67


>sp|Q74K90|UVRB_LACJO UvrABC system protein B OS=Lactobacillus 
johnsonii (strain CNCM I-12250 / La1 / NCC 533) OX=257314 GN=uvrB 
PE=3 SV=1
Length=671

 Score = 73.2 bits (178),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 92/297 (31%), Gaps = 29/297 (10%)

Query  408  ATLHSFDV----KKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            AT+          +  ++ +    +      D+ P  +      VN              
Sbjct  347  ATMPELKAMYNGDRARKQTLIDYGFRLPSALDNRPLKLEEFEKHVNQIMYVSATPGDYEL  406

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE-HKMDQAIIFCRTKIDCDNL  522
             +TD    +     G   PE+    IK    +      K   + ++  +   TK   ++L
Sbjct  407  NQTDHKVEQIIRPTGLLDPEIEVRPIKGQIDDLVGEVNKRIERNERVFVTTLTKKMAEDL  466

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
              Y    G              LH D K  ER + +   + G    LI  ++   GID+ 
Sbjct  467  TDYLKDLG---------IKVRYLHSDIKTLERLEIIRDLRLGKFDVLIGINLLREGIDVP  517

Query  583  GVPYVINVT-----LPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
             V  V  +           +  V  IGR  R    G  I    +  + +   + ++  + 
Sbjct  518  EVSLVAILDADKEGFLRSTRPLVQTIGRAAR-NSNGKVIMYADSITDSMREAIDATERRR  576

Query  638  CYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIK-----VPVDEFDGKVT  689
                +  ++ G T       ++  I + ++ T    + + K     +  DE   K  
Sbjct  577  SLQMKFNKEHGITP----KTIVKPIRDVISITKDSEDKENKESFADLNFDELTKKQK  629


>sp|Q9FNQ1|DEXHE_ARATH DExH-box ATP-dependent RNA helicase DExH14 
OS=Arabidopsis thaliana OX=3702 GN=BRR2C PE=2 SV=1
Length=2157

 Score = 73.6 bits (179),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 56/367 (15%), Positives = 116/367 (32%), Gaps = 30/367 (8%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV  344
            N  K + V P + LA         F + +    +    + G    +   + LE    ++V
Sbjct  560  NEFKIVYVAPMKALA---AEVTSAFSRRLAPLNMVVKELTG--DMQLTKTELEET-QMIV  613

Query  345  GTPGRLDDLVSTGKLNLSQ---VRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL  401
             TP +  D+++    ++S    V+ L++DE   L     +     +   + QV S    +
Sbjct  614  TTPEK-WDVITRKSSDMSMSMLVKLLIIDEVHLLNDDRGAVIEALVARTLRQVESTQTMI  672

Query  402  QVIVCSATLHSF-DVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLG  460
            +++  SATL S+  V +    +                      +           E L 
Sbjct  673  RIVGLSATLPSYLQVAQFLR-VNTDTGLFYFDSSYRPVPLAQQYIGITEHNFAARNELLN  731

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
            +   +      K   +           +    K     R  +   +     F        
Sbjct  732  EICYKKVVDSIKQGHQAMIFVHSRKDTSKTAEKLVDLARQYETLDL-----FTNETHPQF  786

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLH-GDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
             L +  + +    D      +   +H       +R      F  G ++ L+CT   A G+
Sbjct  787  QLMKKDVMKSRNKDLVKFFEAGFGIHHAGMLRSDRTLTERLFSDGLLKVLVCTATLAWGV  846

Query  580  DIHGVPYVI----NVTL-PDEKQNY-----VHRIGRVGR--AERMGLAISLVATEKEKVW  627
            ++     VI             ++      +   GR GR   ++ G  I + + +K   +
Sbjct  847  NLPAHTVVIKGTQLYDAKAGGWKDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYY  906

Query  628  YHVCSSR  634
              + +S+
Sbjct  907  LRLLTSQ  913


 Score = 67.5 bits (163),  Expect = 4e-10, Method: Composition-based stats.
 Identities = 92/557 (17%), Positives = 185/557 (33%), Gaps = 68/557 (12%)

Query  202   HVKFSKNGKDLGL--AFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALS  259
                F+ +  +L L  A      + +    P   L N   +  +    F       F  L 
Sbjct  1309  ETYFTISFHNLALPEARTSHTELLDLKPLPVTSLGNKLYESLYKFSHFNPIQTQIFHVLY  1368

Query  260   KAPDGYIVKSQH----SGNAQVTQTKFLPNAP--KALIVEPSRELAEQTLNNIKQFKKYI  313
                +  +V +      + +A++   +     P  K + + P   L       +  +KK++
Sbjct  1369  HTDNNVLVGAPTGSGKTISAELAMLRLFSTQPDMKVVYIAP---LKAIVRERMNDWKKHL  1425

Query  314   DNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTG---KLNLSQVRFLVLD  370
               P  +E++ + G    D +++L    DI++ TP +  D +S     +  + +V  ++LD
Sbjct  1426  VAPLGKEMVEMTGDYTPDLVALLS--ADIIISTPEK-WDGISRNWHTRSYVKKVGLVILD  1482

Query  371   EADGLLSQGYSDFINRMHNQIPQVTSDGKR--LQVIVCSATLHSFDVKKLSEKIMHFPTW  428
             E   LL       +  + +++  ++S  +R    V + +A  ++ D+             
Sbjct  1483  EIH-LLGADRGPILEVIVSRMRYISSQTERSVRFVGLSTALANAGDLADW--------LG  1533

Query  429   VDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEA  488
             V   G  +   +V  V + V+ +         + +      +A   T        ++  +
Sbjct  1534  VGEIGLFNFKPSVRPVPIEVHIQGYPGKYYCPRMNSMNKPAYAAICTHSPTKPVLIFVSS  1593

Query  489   IKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGD  548
              +  +             +    F       ++L+    Q      +   QF     H  
Sbjct  1594  RRQTRLTALDLIQFAASDEHPRQFLSVSE--EDLQMVLSQITDQNLRHTLQFGIGLHHAG  1651

Query  549   RKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVIN------------VTLPDEK  596
                H+R    E F    ++ L+ T   A G+++     +I             V  P   
Sbjct  1652  LNDHDRSAVEELFTNNKIQVLVSTSTLAWGVNLPAHLVIIKGTEYFDGKTKRYVDFPLT-  1710

Query  597   QNYVHRIGRVGR--AERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYN  654
                +  +GR GR   ++ G A+ LV   K+  +                        +  
Sbjct  1711  -EILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKKFL-----------------YEPFPV  1752

Query  655   EMQLLSEIEEHLNCTISQVEPDIKVPVDE-FDGKVTYGQKRAAGGGSYKGHVDILAPTVQ  713
             E  L  ++ +H N  I  V   I    D       TY  +R     +Y G       T+ 
Sbjct  1753  ESSLKEKLHDHFNAEI--VSGTIGNKEDAVHYLTWTYLFRRLMANPAYYGLEGTQDETI-  1809

Query  714   ELAALEKEAQTSFLHLG  730
               + L +  QT+F  L 
Sbjct  1810  -CSYLSRLVQTTFEDLE  1825


>sp|Q2URJ5|MPH1_ASPOR ATP-dependent DNA helicase mph1 OS=Aspergillus 
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=mph1 
PE=3 SV=2
Length=1129

 Score = 73.2 bits (178),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 33/200 (17%), Positives = 65/200 (33%), Gaps = 8/200 (4%)

Query  442  HHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI  501
            +   V  +    +L   L       + +         +     + +A +   GE    A 
Sbjct  635  YQRQVVQDESFKKLINHLQPWTKNPEFIGHPKLEYLKSVVLNHFMDAGEGSNGE----AS  690

Query  502  KEHKMDQAIIFCRTKIDCDNLEQYFIQQGG--GPDKKGHQFSCVCLHGDRKPHERKQNLE  559
                  + +IF   +   + + +   +      P     Q S     G      +   ++
Sbjct  691  DSQSSTRIMIFVHFRDSAEEVTRVLKRYEPMIRPHVFVGQSSAKGSEG-MGQKTQLDIVQ  749

Query  560  RFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV  619
            +FKKG    ++ T +   G+DI  V  ++           + R+GR GR  R G  + L+
Sbjct  750  KFKKGTYNTIVATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGRK-RAGNIVLLL  808

Query  620  ATEKEKVWYHVCSSRGKGCY  639
               KE+  Y       +   
Sbjct  809  MEGKEEESYIKAKDNYEKMQ  828


 Score = 38.6 bits (88),  Expect = 0.27, Method: Composition-based stats.
 Identities = 17/87 (20%), Positives = 37/87 (43%), Gaps = 4/87 (5%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + + V P++ L  Q ++           P+ +  ++ G  A   +    +N   +   TP
Sbjct  369  QIIFVAPTKPLVAQQISACFGIA---GIPRSQTTMLTGEAAPGIRAEEWQNK-RVFFMTP  424

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADG  374
              L + + +G  +  ++  LV+DEA  
Sbjct  425  QTLINDLKSGIADPKRIVLLVVDEAHR  451


>sp|Q8R418|DICER_MOUSE Endoribonuclease Dicer OS=Mus musculus 
OX=10090 GN=Dicer1 PE=1 SV=3
Length=1916

 Score = 73.6 bits (179),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 53/289 (18%), Positives = 103/289 (36%), Gaps = 32/289 (11%)

Query  338  NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVL-----DEADGLLSQGYSDFINRMHNQIP  392
            N  ++ V +  R   L+S   L+  +   +VL     D+  G++ +    +I     ++ 
Sbjct  282  NDCNVAVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEEL-  340

Query  393  QVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKT  452
                     + ++ + TL    +  L E+    P  +DLK        +  ++    P  
Sbjct  341  -------HRKFLLFTDTLL-RKIHALCEEYF-SPASLDLKYVTPKVMKLLEILRKYKPYE  391

Query  453  DRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF  512
             + +E +   + R  D +   +     +  E   E  K      +            IIF
Sbjct  392  RQQFESVEWYNNRNQDNYVSWSDSEDDDDDEEIEEKEKPETNFPSPFTNILC----GIIF  447

Query  513  CRTKIDCDNLEQYFIQQG-GGPDKKGHQFSCVCLHG-DRKP----------HERKQNLER  560
               +     L +   + G   P+      + +  HG  +             ++++ L +
Sbjct  448  VERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQMEAEFRKQEEVLRK  507

Query  561  FKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRA  609
            F+  +   LI T V   G+DI     V+   LP E ++YV   GR  RA
Sbjct  508  FRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR-ARA  555


 Score = 42.4 bits (98),  Expect = 0.021, Method: Composition-based stats.
 Identities = 53/284 (19%), Positives = 91/284 (32%), Gaps = 47/284 (17%)

Query  250  PPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQF  309
            P K     L  A D   +   ++G+ +            A+++  ++ELA Q   ++   
Sbjct  44   PRKYQVELLEAALDHNTIVCLNTGSGKT---------FIAVLL--TKELAHQIRGDLNPH  92

Query  310  KK---YIDNPKLRELLIIGGVAARDQLSV-----LENGV--------------DIVVGTP  347
             K   ++ N   +    +  V     L V     LE                  +++ T 
Sbjct  93   AKRTVFLVNSANQVAQQVSAVRTHSDLKVGEYSDLEVNASWTKERWSQEFTKHQVLIMTC  152

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
                 ++  G L+LS +  LV DE    +       I ++    P           I+  
Sbjct  153  YVALTVLKNGYLSLSDINLLVFDECHLAILDHPYREIMKLCESCPSCPRILGLTASILN-  211

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH--------HVVVPVNPKTDR--LWE  457
                  D ++L EKI      +    E +    V          +VV   P TDR  L+E
Sbjct  212  ---GKCDPEELEEKIQKLERILRSDAETATDLVVLDRYTSQPCEIVVDCGPFTDRSGLYE  268

Query  458  RLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI  501
            RL        D     N    +   +    + +IL    AV  +
Sbjct  269  RLLMELEAALDFINDCNVAVHSKERDSTLISKQILSDCRAVLVV  312


>sp|Q9HMV6|HELS_HALSA ATP-dependent DNA helicase Hel308 OS=Halobacterium 
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) 
OX=64091 GN=hel308 PE=3 SV=1
Length=783

 Score = 73.2 bits (178),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 61/377 (16%), Positives = 112/377 (30%), Gaps = 84/377 (22%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
             AL + P R LA +     + F+++     L   +  G        + L +  DIVV T 
Sbjct  79   TALYIVPLRALAGEKAQEFEAFERF----GLSVGVSTG--NYERDGARLADN-DIVVATS  131

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
             ++D LV  G   +  +  +V DE   +        +      + ++      LQV+  S
Sbjct  132  EKVDSLVRNGAGWIDDLSCVVADEVHLVDDDHRGPTLEV---TLAKLRQQVADLQVVALS  188

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT                   V   GE +       V     P   R     G+S    D
Sbjct  189  AT-------------------VGNAGELAAWLDAELVDSDWRPIELRTGVHYGQSLHYDD  229

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
               A+ +   G+ +  + ++ +                    ++F  ++ + +   +   
Sbjct  230  GTQAELSVGSGSQTAAVVADTLA--------------DDGSTLVFVNSRRNAEASARRLA  275

Query  528  QQGGGPDKKGHQFSCVCL---------------------------HGDRKPHERKQNLER  560
               G       +     +                           H       R+   E 
Sbjct  276  DVTGNALSSAERERLADIAAEIRGVSDTETSDELADAVASGAAFHHAGLAREHRELVEEA  335

Query  561  FKKGDVRFLICTDVAARGIDIHGVPYVI----NVT------LPDEKQNYVHRI-GRVGRA  609
            F+   V+ +  T   A G++      V+              P +    VH++ GR GR 
Sbjct  336  FRDRLVKAVSATPTLAAGVNTPARRVVVRDWQRYDGTAGGMQPLDVLE-VHQMFGRAGRP  394

Query  610  ERM--GLAISLVATEKE  624
                 G A+ L  +  E
Sbjct  395  GLDPYGEAVLLANSHDE  411


>sp|B0R7Q2|HELS_HALS3 ATP-dependent DNA helicase Hel308 OS=Halobacterium 
salinarum (strain ATCC 29341 / DSM 671 / R1) OX=478009 
GN=hel308 PE=3 SV=1
Length=783

 Score = 73.2 bits (178),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 61/377 (16%), Positives = 112/377 (30%), Gaps = 84/377 (22%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
             AL + P R LA +     + F+++     L   +  G        + L +  DIVV T 
Sbjct  79   TALYIVPLRALAGEKAQEFEAFERF----GLSVGVSTG--NYERDGARLADN-DIVVATS  131

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
             ++D LV  G   +  +  +V DE   +        +      + ++      LQV+  S
Sbjct  132  EKVDSLVRNGAGWIDDLSCVVADEVHLVDDDHRGPTLEV---TLAKLRQQVADLQVVALS  188

Query  408  ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            AT                   V   GE +       V     P   R     G+S    D
Sbjct  189  AT-------------------VGNAGELAAWLDAELVDSDWRPIELRTGVHYGQSLHYDD  229

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
               A+ +   G+ +  + ++ +                    ++F  ++ + +   +   
Sbjct  230  GTQAELSVGSGSQTAAVVADTLA--------------DDGSTLVFVNSRRNAEASARRLA  275

Query  528  QQGGGPDKKGHQFSCVCL---------------------------HGDRKPHERKQNLER  560
               G       +     +                           H       R+   E 
Sbjct  276  DVTGNALSSAERERLADIAAEIRGVSDTETSDELADAVASGAAFHHAGLAREHRELVEEA  335

Query  561  FKKGDVRFLICTDVAARGIDIHGVPYVI----NVT------LPDEKQNYVHRI-GRVGRA  609
            F+   V+ +  T   A G++      V+              P +    VH++ GR GR 
Sbjct  336  FRDRLVKAVSATPTLAAGVNTPARRVVVRDWQRYDGTAGGMQPLDVLE-VHQMFGRAGRP  394

Query  610  ERM--GLAISLVATEKE  624
                 G A+ L  +  E
Sbjct  395  GLDPYGEAVLLANSHDE  411


>sp|Q5A1A0|MPH1_CANAL ATP-dependent DNA helicase MPH1 OS=Candida 
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=MPH1 
PE=3 SV=2
Length=1187

 Score = 73.2 bits (178),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 1/84 (1%)

Query  548  DRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVG  607
                  +K+ +++FKKG    L+ T +   G+DI  V  +I           + R+GR G
Sbjct  575  GMSQKLQKEIIKKFKKGVFNILVATSIGEEGLDIGEVDLIICYDSTSSPIKNIQRMGRTG  634

Query  608  RAERMGLAISLVATEKEKVWYHVC  631
            R  R G  + L ++ +E  +    
Sbjct  635  RK-RDGKVLMLFSSNEESKFDKAM  657


 Score = 40.9 bits (94),  Expect = 0.059, Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 37/85 (44%), Gaps = 5/85 (6%)

Query  290  LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR  349
            + + P+R L  Q    IK        P  +  +++     R   + + N   +   TP  
Sbjct  184  IFMAPTRPLVAQ---QIKACCSIAGIPSSKVAILL--DKTRRNRAEIWNSRQVFFTTPQV  238

Query  350  LDDLVSTGKLNLSQVRFLVLDEADG  374
            +++ +++G +N   +  LV+DEA  
Sbjct  239  VENDLASGVVNPKSIALLVIDEAHR  263


>sp|Q6BRF0|MPH1_DEBHA ATP-dependent DNA helicase MPH1 OS=Debaryomyces 
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / 
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=MPH1 PE=3 SV=2
Length=1105

 Score = 73.2 bits (178),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 51/139 (37%), Gaps = 6/139 (4%)

Query  548  DRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVG  607
                  +K  +++FKKG+   L+ T +   G+DI  V  ++           + R+GR G
Sbjct  535  GMNQKLQKDLIKKFKKGEYNILVATSIGEEGLDIGEVDLIVCYDSTSSPIKNIQRMGRTG  594

Query  608  RAERMGLAISLVATEKEKVWYHVCSS---RGKGCYNTRLKEDGGCTIWYNEMQLLSEIEE  664
            R  R G  + L A  +E  +    +      +   N RL             +    I E
Sbjct  595  RK-RDGKVLLLFAGNEESKFDKAMAGYEFIQQHIMNGRLITLAQSN--RIIPKSYKPIVE  651

Query  665  HLNCTISQVEPDIKVPVDE  683
                 I +   +IK   DE
Sbjct  652  KKFIEIPEENTEIKAEEDE  670


 Score = 37.0 bits (84),  Expect = 0.84, Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 52/138 (38%), Gaps = 26/138 (19%)

Query  247  FKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNI  306
            F    +  +  L  A    + K+  +    +  T++ P   K + + P++ L  Q     
Sbjct  92   FNIVQRAFYDNLLVALPTGLGKTFIASTVMLNFTRWFPRG-KIIFMAPTKPLVAQ-----  145

Query  307  KQFKKYIDNPKLRELLIIGGVAARDQLSVL----ENGVDI------VVGTPGRLDDLVST  356
                      +++    I G+   +   +L     N  DI         TP  +++ ++ 
Sbjct  146  ----------QIKACCGITGIPTSEVAILLDKSRRNRADIWDSKTVFFTTPQVVENDLTA  195

Query  357  GKLNLSQVRFLVLDEADG  374
            G ++  +V  LV+DEA  
Sbjct  196  GIIDPKEVVLLVIDEAHK  213


>sp|P54509|YQHH_BACSU Uncharacterized ATP-dependent helicase YqhH 
OS=Bacillus subtilis (strain 168) OX=224308 GN=yqhH PE=3 
SV=1
Length=557

 Score = 72.5 bits (176),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 63/393 (16%), Positives = 136/393 (35%), Gaps = 36/393 (9%)

Query  311  KYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRL---DDLVSTGKLNLSQVRFL  367
            +++ N   +  L++     ++++  + N V ++   PG L   +          S +   
Sbjct  189  EFVRNLVKKYCLLLTATPIQNRIEEIFNLVSLL--KPGHLGSQNHFQEEFAKKKSSL---  243

Query  368  VLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV--CSATLHSFDVKKLSEKIMHF  425
               EA   L    +  + R       +    + ++ +    S        + L ++I   
Sbjct  244  ---EAHEHLKDLVNKVMIRNRRHDTGLNWKQRHVETVPIQFS-----PSEQALYDEISRL  295

Query  426  PTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW  485
               ++         T+               +++     +      +D      +     
Sbjct  296  KDSINKPASMFSIMTLQRECCSSREAVYMTLKKMLDQKEKQAPAIDEDTISVLIDRINQV  355

Query  486  SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL  545
            ++  K L+    ++ I     D+ IIF   +     L+ +  Q G          S V  
Sbjct  356  TQNSKALQVVDLIKKID----DKVIIFTEYRATQIYLQWFLQQNG---------ISSVPF  402

Query  546  HGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR  605
             G  K  ++    + F+ G ++ LI T+    GI++    ++IN  LP        RIGR
Sbjct  403  RGGFKRGKKDWMKDLFR-GKIQVLIATEAGGEGINLQFCNHMINYDLPWNPMRLEQRIGR  461

Query  606  VGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEH  665
            + R  +           K  V  H+     +  +    K  G       ++Q ++  EEH
Sbjct  462  IHRLGQERDVHIYNMATKHTVEEHILKLLYEKIHLFE-KVVGELDDILTKIQ-VNNFEEH  519

Query  666  LNCTI--SQVEPDIKVPVDEFDGKVTYGQKRAA  696
            L+  +  S  E ++K+ +D     ++Y ++  A
Sbjct  520  LHDILYHSATEEEMKIKMDNLTSFLSYKKQLPA  552


>sp|Q97AI2|HELS_THEVO ATP-dependent DNA helicase Hel308 OS=Thermoplasma 
volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 
/ NBRC 15438 / GSS1) OX=273116 GN=hel308 PE=3 SV=1
Length=674

 Score = 72.9 bits (177),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 61/457 (13%), Positives = 143/457 (31%), Gaps = 103/457 (23%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            K++ + P R LA +    + + ++      +R  L IG               D+V+ T 
Sbjct  67   KSIYIVPLRSLAMEKYEELSRLREL----GMRVKLSIGNYDDTPDFI---KRYDVVILTS  119

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS  407
             + D L+      + +V  +V+DE   +  +     +  +   I          ++I  S
Sbjct  120  EKADSLMHHDPYMMEEVGLMVIDEIHMIGDEYRGPTLETV---ITTARYVNPETRIIALS  176

Query  408  ATLHS-FDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
            AT+ +  ++ +     +                 +     PV  K   L+          
Sbjct  177  ATVSNASEIAEWLNASL-----------------IKSSFRPVPLKVGILY---------R  210

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
            + +    + R   +   +  E +                  Q +IF  ++   +++ +  
Sbjct  211  NRLFLDGDARSDVDINLLVKETVD--------------DGGQVLIFVSSRKRAEDMAKNL  256

Query  527  IQQGGGPD----------------KKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLI  570
             Q     +                 +         H      +R    + F+   ++ ++
Sbjct  257  SQLFDPINDLKVSSEDANVYDDLLNEMLPHGVSFHHAGLSNEQRSFIEKAFRHRKLKVIV  316

Query  571  CTDVAARGIDIHGVPYVINVTLPDEKQ---NYV------HRIGRVGRAE--RMGLAISLV  619
             T   A G+++     VI   +         Y+        IGR GR    + G+ I   
Sbjct  317  ATPTLAAGVNLPA-RLVIVKDVTRYGDLGITYLSNMEVKQMIGRAGRPGYDQYGIGIIYA  375

Query  620  AT-----------------------EKEKVWYHVCSSRGKGCYNTRLK-EDGGCTIWYNE  655
            A+                       + EKV ++  ++   G   ++++ E+   + +Y  
Sbjct  376  ASANSYQVVKEYISEEPEPVDSYIGKPEKVRFNTLAAIAMGLATSQVEMEEFYRSTFYYA  435

Query  656  MQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQ  692
                 EI   +N +I  ++ +  +   +      +G+
Sbjct  436  QNGEDEIPNRINESIKFLKENGFIKEKDSLRATEFGK  472


>sp|Q5NFN4|UVRB_FRATT UvrABC system protein B OS=Francisella tularensis 
subsp. tularensis (strain SCHU S4 / Schu 4) OX=177416 
GN=uvrB PE=3 SV=1
Length=668

 Score = 72.9 bits (177),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 54/314 (17%), Positives = 102/314 (32%), Gaps = 49/314 (16%)

Query  417  KLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTR  476
            +L   + + P   + + E  +P T++    P N + ++    + +    T  +  +   R
Sbjct  366  RLPSALDNRPLKFN-EFESLLPQTIYVSATPANYELEKSQNTVQQVIRPTGLLDPEVFVR  424

Query  477  PGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKK  536
            P A   E     I               K ++ +I   TK   +NL +Y  + G      
Sbjct  425  PVAIQVEDALSEINKAIA----------KEERVLITTLTKKMVENLTEYLSEHG------  468

Query  537  GHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT-----  591
                +   LH D    ER Q +   + G    L+  ++   G+D+  V  ++        
Sbjct  469  ---VNVRYLHSDIDTVERVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEG  525

Query  592  LPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTI  651
                +++ +  IGRV R  + G AI             V  S  K    T  +       
Sbjct  526  FLRSEKSLIQTIGRVAR-NQNGRAILYADV--------VTKSMQKAMDETLRRR------  570

Query  652  WYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPT  711
                     ++++  N   + V   I   +D+        QKRA          D+    
Sbjct  571  ---------KLQDEYNQKHNIVPKTIIKNIDDMLDSSPEMQKRAYKNNLRLKVDDVDVSA  621

Query  712  VQELAALEKEAQTS  725
            +  +    K  +  
Sbjct  622  ILGMTEATKVIKAL  635


>sp|Q97LQ2|UVRB_CLOAB UvrABC system protein B OS=Clostridium acetobutylicum 
(strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 
/ VKM B-1787) OX=272562 GN=uvrB PE=3 SV=1
Length=666

 Score = 72.5 bits (176),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 46/295 (16%), Positives = 93/295 (32%), Gaps = 41/295 (14%)

Query  417  KLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTR  476
            +L     + P   D + E+ +   V     P N + D       +    T  +  +   R
Sbjct  366  RLPSAYDNRPLKFD-EFEEKINQIVFVSATPSNYELDHSENIAEQVIRPTGLLDPEIEVR  424

Query  477  PGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKK  536
            P              +   Y+          + ++   TK   ++L  Y    G      
Sbjct  425  PTKGQ----------IDDLYSEIKNTIQNGFRILVTTLTKKMAEDLTDYLKDLG------  468

Query  537  GHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT-----  591
                    +H D    ER + ++  + G+   L+  ++   G+DI  V  V  +      
Sbjct  469  ---IKTTYMHSDIDTLERMKIIKDVRTGEFDVLVGINLLREGLDIPEVALVAILDADKEG  525

Query  592  LPDEKQNYVHRIGRVGRAERM-------------GLAISLVATEKEKVWYHVCSSRGKGC  638
                +++ +  IGR  R                 G AIS     K +    +  +   G 
Sbjct  526  FLRSERSLIQTIGRAARNSESRVIMYGDKITDAMGKAIS---ETKRRRKIQIEYNEKNGI  582

Query  639  YNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQK  693
              T +K+     I  +E+       + ++  +     +I   + EF+ ++    K
Sbjct  583  KPTTIKKAVRDVIGISEVAEGKTEYKSMDEAVKADNKNIDKLIKEFEKEMKEAAK  637


>sp|Q974S1|HELS_SULTO ATP-dependent DNA helicase Hel308 OS=Sulfurisphaera 
tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 
/ 7) OX=273063 GN=hel308 PE=1 SV=1
Length=704

 Score = 72.5 bits (176),  Expect = 8e-12, Method: Composition-based stats.
 Identities = 83/466 (18%), Positives = 146/466 (31%), Gaps = 50/466 (11%)

Query  250  PPKDGFVALSKAPDGYIVKSQHSGNAQVTQT----KFLPNAPKALIVEPSRELAEQTLNN  305
              +     L       +     SG   + +       L    KA+ + P R L  +  N 
Sbjct  31   QSEAIRKGLLDGKRLLVTSPTASGKTLIAELGMINYLLSKGGKAIYITPLRALTNEKYNT  90

Query  306  IKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVR  365
             K +    +   ++  +  G     D  + LEN  DI+V T  +LD L       L++V 
Sbjct  91   FKDW----ETLGIKTGMTSGDYDTDD--AWLEN-YDIIVTTYEKLDSLWRHKAKWLNEVS  143

Query  366  FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHS-FDVKKLSEKIMH  424
            + VLDE   L        +  +           KR  V+  SAT+ +  ++       + 
Sbjct  144  YFVLDEFHYLNDPERGPTVESV------AIRAKKRGIVLGLSATISNGKEIANWLNAELV  197

Query  425  FPTWVDL-KGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPE  483
               W  +   E  +       VV     T R           T D+ +K        S  
Sbjct  198  ATNWRPVPLKEGIIYPEKKGFVVVYKDNTSRKVYGDDAIIAYTLDIVSKGGQVLVFRSSR  257

Query  484  MWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCV  543
              +E       +Y      E K    I   R   + ++      +       +G  +   
Sbjct  258  KLAENTARKIVQYMNFVKLEDKKLLEI--ARKIKEVEDAGSNEKEDLYNLVLRGVAYH--  313

Query  544  CLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVI------N------VT  591
              H       R      F+   ++ ++ T   A G+++     VI      N      + 
Sbjct  314  --HAGLSKGLRDIIESSFRDRILKVIVATPTLAAGVNLPARAVVIGDIYRYNRKVVGYMD  371

Query  592  L-PDEKQNYVHRIGRVGRAE--RMGLAISLVATEK--EKVWYHVCSSRGKGCYNTRLKED  646
            L P    +Y    GR GR      G A+ +V  ++  EKV+     S  +   +    E 
Sbjct  372  LIP--VMDYKQMSGRAGRPGFDENGEAVVVVRNKREAEKVYERYLMSDVEPIESKLGSES  429

Query  647  GGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQ  692
               +       L+S I      T  ++   +K  +   +    Y +
Sbjct  430  AFYSF------LISIIASEGEKTTEELMEYVKETLLPKELAKKYFR  469


 Score = 45.5 bits (106),  Expect = 0.002, Method: Composition-based stats.
 Identities = 26/147 (18%), Positives = 48/147 (33%), Gaps = 19/147 (13%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPL-ILGGGDVLMAAETGSGKTGAFSIPVI  61
            +  ++ +  +I   ++          Q+E+I   +L G  +L+ + T SGKT    + +I
Sbjct  5    SIDDLPLDIKIIDILKRRGIRTLNPPQSEAIRKGLLDGKRLLVTSPTASGKTLIAELGMI  64

Query  62   QIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLC----CQSREVK  117
              +          K GK    T    L   + N +       I +             ++
Sbjct  65   NYLL--------SKGGKAIYITPLRALTNEKYNTFKDWETLGIKTGMTSGDYDTDDAWLE  116

Query  118  EWHGCRATKG------LMKGKHYYEVS  138
             +     T          K K   EVS
Sbjct  117  NYDIIVTTYEKLDSLWRHKAKWLNEVS  143


>sp|Q8YXS9|UVRB_NOSS1 UvrABC system protein B OS=Nostoc sp. (strain 
PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=uvrB PE=3 
SV=1
Length=665

 Score = 72.5 bits (176),  Expect = 8e-12, Method: Composition-based stats.
 Identities = 33/187 (18%), Positives = 67/187 (36%), Gaps = 19/187 (10%)

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
            ++ +I   TK   ++L +Y  + G              LH +    +R + L+  ++G  
Sbjct  445  ERVLITTLTKRMAEDLTEYLQEHG---------VKVRYLHSEINSIQRIEILQDLRQGSF  495

Query  567  RFLICTDVAARGIDIHGVPYVINVTLPDEKQNY-------VHRIGRVGRAERMGLAISLV  619
              L+  ++   G+D+  V  V  +    +K+ +       +  IGR  R  R G AI   
Sbjct  496  DVLVGVNLLREGLDLPEVSLVAIMD--ADKEGFLRAERSLIQTIGRAARHIR-GQAILYA  552

Query  620  ATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKV  679
                + +   +  +  +        +  G T      +  + I   L  +      D+KV
Sbjct  553  DNMTDSMIKAIEETDRRRGIQVAYNKLHGITPQPIVKKSSNAILSFLEVSRRLNATDLKV  612

Query  680  PVDEFDG  686
              +  D 
Sbjct  613  VEEHIDE  619


>sp|Q7TV80|UVRB_PROMM UvrABC system protein B OS=Prochlorococcus 
marinus (strain MIT 9313) OX=74547 GN=uvrB PE=3 SV=1
Length=679

 Score = 72.5 bits (176),  Expect = 8e-12, Method: Composition-based stats.
 Identities = 53/361 (15%), Positives = 112/361 (31%), Gaps = 83/361 (23%)

Query  375  LLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKK----LSEKIMHFPTWVD  430
            L+  G+       +  +       K  Q +  SAT   +++K+    L+E+++       
Sbjct  359  LIEHGFRLPSAADNRPLKSEEFWSKARQTVFVSATPGDWELKQSDGHLAEQVIR------  412

Query  431  LKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIK  490
                   P  V   +V V P   ++ + L +  IR +                       
Sbjct  413  -------PTGVLDPLVEVRPTQGQVDDLLAEIRIRAE-----------------------  442

Query  491  ILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRK  550
                          K ++ +I   TK   ++L  Y  +         +      LH +  
Sbjct  443  --------------KQERVLITTLTKRMAEDLTDYLAE---------NDVRVRYLHSEIH  479

Query  551  PHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNY-------VHRI  603
              ER + ++  + G+   L+  ++   G+D+  V  V+ +    +K+ +       +  I
Sbjct  480  SIERIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVVILD--ADKEGFLRAERSLIQTI  537

Query  604  GRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIE  663
            GR  R    G+A+       + +   +  +  +        E  G        +      
Sbjct  538  GRAARH-VDGMALLYADNLTDSMSRAISETERRREIQKAYNELNGIVPRPAGKRAS----  592

Query  664  EHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKEAQ  723
               N  +S +E   ++  D  D  +     RA                +  L  L  + +
Sbjct  593  ---NSILSFLELSRRLQTDGKDADLVQITGRAV---DALDSDQDAGLALDALPELIDQLE  646

Query  724  T  724
            T
Sbjct  647  T  647


>sp|Q1DW80|DCL2_COCIM Dicer-like protein 2 OS=Coccidioides immitis 
(strain RS) OX=246410 GN=DCL2 PE=3 SV=3
Length=1435

 Score = 72.9 bits (177),  Expect = 8e-12, Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 61/198 (31%), Gaps = 22/198 (11%)

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRT  515
            W+R   S++         +T  G  +P    E  + +        ++       I+F   
Sbjct  364  WDREDNSYMLNVLSQVVSSTEMGVQNPPD--ELSRKVHKLIDFLVLEHVNGSIGIVFAEE  421

Query  516  KIDCDNLEQYFIQQGGGPDKKGHQF-----------SCVCLHGDRKPHERKQNLERFKKG  564
            +     L Q           K   F               LH           ++  + G
Sbjct  422  RTIVIMLAQLLSLHPRTKHIKTTAFLGSSASVSRKSDITELHNPIDQS---TAIDDLRTG  478

Query  565  DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAI-SLVATEK  623
                +I T V   GID+     VI   LP + ++++ R  R GRA + G      + +E 
Sbjct  479  KKDLIIATAVLEEGIDVPICDLVICFDLPKDLRSFIQR--R-GRARKKGSKFALFLHSED  535

Query  624  EKVW--YHVCSSRGKGCY  639
                   H+     K  Y
Sbjct  536  RATSSELHLMEKTMKQLY  553


 Score = 55.1 bits (131),  Expect = 3e-06, Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 100/301 (33%), Gaps = 48/301 (16%)

Query  245  EEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQV--------TQTKFLPNAPKALIVEPSR  296
               +         LS++    I+ +  +G+ +          + +  P       + P+ 
Sbjct  42   LPPRRARGYQLEMLSESLRQNIIVAMDTGSGKTEIAILRIQRELERCPAHKFVWFMAPTV  101

Query  297  ELAEQTLNNIKQFKKYIDNPKLRELLIIGGV-----AARDQLSVLENGVDIVVGTPGRLD  351
             L EQ  + I +       P  +  L+ G       + +     +   + IV+ TP  L 
Sbjct  102  ALVEQQHSAISK-----QLPAFQTRLLTGAANVSHWSTKKIWDDILLNIRIVISTPQVLL  156

Query  352  DLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ----------IPQV-----TS  396
            D +S G ++L  +  LV DEA   +    ++ I R              +P +     + 
Sbjct  157  DALSNGFVDLHTISLLVFDEAHHCVRDAPANRIMRDFYHYHRQEEGTDGLPHILGLTASP  216

Query  397  DGKRLQVIV------CSATLHSFDV-KKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN  449
              +  Q  +       +A   +  + ++   + +H P +  ++ +          V   +
Sbjct  217  TTRARQTDLEVLEINLNAVCVTPKMHREEMMQFVHMPEYRSIEYQPD--------VQNFS  268

Query  450  PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA  509
               ++L   + +  I  D        R    S +   +A++  K     +  +  +  + 
Sbjct  269  SIVEKLSVIINELDIENDPFVKFMRRRNDLKSRQRLLDALENKKTPCLDQLKRCLRRSRV  328

Query  510  I  510
            I
Sbjct  329  I  329


>sp|Q2VF18|DCL2_CRYPA Dicer-like protein 2 OS=Cryphonectria parasitica 
OX=5116 GN=DCL-2 PE=3 SV=1
Length=1451

 Score = 72.9 bits (177),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 84/286 (29%), Gaps = 15/286 (5%)

Query  409  TLHSFDVKKLSEKIMHFPTWVDLKGED-SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD  467
            T     +K    + M     +     D  + + +   +  +  +            I   
Sbjct  330  TYVQDTMKSFCRRSMEMAKELGAWAADWFISEAIRLFLAGIYRQGASSKSFRDAEVIFLA  389

Query  468  DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI  527
             V    N  P          + K+ +       +   K  +AI F + +     L     
Sbjct  390  RVFQDANIEPPPPLTTHSGLSEKVQR--IIEVLLNYDKDARAICFVKERATTVVLSHILT  447

Query  528  QQGGGPDKK--GHQFSCVCLHG------DRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
                   K   G       + G      D       Q LE F++G    L+ T V   GI
Sbjct  448  THPEVSSKFRIGTMVGTSFVPGVKRDFLDLPETGGSQCLEAFREGRKNMLVATSVLEEGI  507

Query  580  DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCY  639
            D+     +I    P+  + ++ R GR  R  R       V  E E  W     ++ K  Y
Sbjct  508  DVPACNLIICFDKPNNLRAFIQRRGR-ARM-RQSHLYLFVEDEAEADW-EALEAQMKLQY  564

Query  640  NTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEP-DIKVPVDEF  684
                +E        N   L    E  +  T +++   D K  +  F
Sbjct  565  EDEKREHERLEAIENSEALDYPEELRVESTGARLTINDAKSHLQHF  610


 Score = 45.9 bits (107),  Expect = 0.002, Method: Composition-based stats.
 Identities = 20/101 (20%), Positives = 40/101 (40%), Gaps = 13/101 (13%)

Query  279  QTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARD------Q  332
            + + +P       + P+  L  Q    +K        P ++  ++ G             
Sbjct  100  ELEEMPEGQVVWFLTPTVSLCAQQYAVVKA-----QIPSVQTKIVTGADKVDSWSSTTWD  154

Query  333  LSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEAD  373
             ++L   V +++ TP  L D +  G +N+S +  +V DEA 
Sbjct  155  GALL--NVKVIITTPQVLLDALLHGFVNISSLALMVFDEAH  193


>sp|Q83NI7|UVRB_TROW8 UvrABC system protein B OS=Tropheryma whipplei 
(strain TW08/27) OX=218496 GN=uvrB PE=3 SV=1
Length=677

 Score = 72.5 bits (176),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 94/280 (34%), Gaps = 23/280 (8%)

Query  455  LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM--DQAIIF  512
            L    GK  +   D   +   RP        +      + +  +  I++ K+  ++ ++ 
Sbjct  396  LSATPGKYELSKSDGVVEQIIRPTGLVDPKITVKPIKGQIDDLLEEIRKRKLLSERVLVT  455

Query  513  CRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICT  572
              TK   + L  +  + G          +   LH D     R + L   + G +  L+  
Sbjct  456  TLTKRMAEELTDFLSEAG---------VNVSYLHSDIDTLHRVELLTSLRMGRIDVLVGI  506

Query  573  DVAARGIDIHGVPYVINVT-----LPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
            ++   G+D+  V  V  +            +++  IGR  R    G          E + 
Sbjct  507  NLLREGLDLPEVSLVAILDADKEGFLRSTTSFIQTIGRAARH-VSGEVHMYADNMTESMQ  565

Query  628  YHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDI--KVPVDEFD  685
              +  +  +           G T    +   +S+I E L+    +++  I   +P  + D
Sbjct  566  KSIDETNRRRRIQQDYNRKMGVTPVPIKKT-VSDITEVLSRPSRKIDCTILDSLPDPKID  624

Query  686  GKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKEAQTS  725
            GK      ++     Y     ++    +E A L  E Q+ 
Sbjct  625  GKQIKSHIKSLEAKMYMAAESLM---FEEAAELRDEIQSL  661


>sp|Q65ST2|UVRB_MANSM UvrABC system protein B OS=Mannheimia succiniciproducens 
(strain MBEL55E) OX=221988 GN=uvrB PE=3 SV=1
Length=678

 Score = 72.1 bits (175),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 97/320 (30%), Gaps = 52/320 (16%)

Query  417  KLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTR  476
            +L   + + P   + + E   P T++    P   + ++    +    +R           
Sbjct  372  RLPSALDNRPLRFE-EFERLAPQTIYVSATPGPYELEKSGTEIIDQVVR----------P  420

Query  477  PGANSPEMWSEAIKILKGEYAVRAIKE-HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDK  535
             G   PE+    + I   +    A +   + ++ ++   TK   ++L  Y  + G     
Sbjct  421  TGLLDPEIEIRPVSIQVDDLLSEARQRADRNERVLVTTLTKRMAEDLTDYLDEHG-----  475

Query  536  KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT----  591
                     LH D    ER + +   + G+   L+  ++   G+DI  V  V  +     
Sbjct  476  ----IRVRYLHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKE  531

Query  592  -LPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCT  650
                 +++ +  IGR  R    G AI             + +S  K    T  + +    
Sbjct  532  GFLRSERSLIQTIGRAAR-NLKGKAILYAD--------RITNSMEKAITETNRRREKQ--  580

Query  651  IWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAP  710
                      +  E    T   +   +   +D   G     + +       +        
Sbjct  581  ---------MKYNEEHGITPQGLNKKVGELLDIGQGGSNKSRNKP------RSQKAAEPA  625

Query  711  TVQELAALEKEAQTSFLHLG  730
            T   +    KE Q     L 
Sbjct  626  TTYAIPMTAKEYQQQIKKLE  645


>sp|Q8CGS6|DPOLQ_MOUSE DNA polymerase theta OS=Mus musculus OX=10090 
GN=Polq PE=1 SV=2
Length=2544

 Score = 72.5 bits (176),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 62/352 (18%), Positives = 114/352 (32%), Gaps = 42/352 (12%)

Query  309  FKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP----GRLDDLVSTGKLNLSQV  364
             +       L+    +G  +   Q S L    DI V T     G ++ L+   K++L  +
Sbjct  156  LQSLFQEVGLKVDGYMGSTSPTGQFSSL----DIAVCTIERANGLVNRLIEENKMDL--L  209

Query  365  RFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR------------LQVIVCSATLHS  412
              +V+DE   L        +  +  +I  VT                 +Q++  SATL +
Sbjct  210  GMVVVDELHMLGDSHRGYLLELLLTKICYVTRKSASHQAESASTLSNAVQIVGMSATLPN  269

Query  413  FD-VKKL--SEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDV  469
               V     +E        V L     + ++++   + +  +   L +  G         
Sbjct  270  LQLVASWLNAELYHTDFRPVPLLESIKIGNSIYDSSMKLVREFQPLLQVKGDEDHIVSLC  329

Query  470  HAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAII----FCRTKIDCDNLEQY  525
            +                +  + +    A      H   + ++    F    +D  +L + 
Sbjct  330  YETIQDNHSVLIFCPSKKWCEKVADIIAREFYNLHHQPEGLVKSSEFPPVILDQKSLLEV  389

Query  526  FIQQGGGPD------KKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
              Q    P       K    +     H      ER      F++G +R L  T   + G+
Sbjct  390  MDQLKRSPSGLDSVLKNTVPWGVAFHHAGLTFEERDIIEGAFRQGFIRVLAATSTLSSGV  449

Query  580  DIHGVPYVINVTL----PDEKQNYVHRIGRVGRAE--RMGLAISLVATEKEK  625
            ++     +I   +    P +   Y   +GR GR     MG +I LV    EK
Sbjct  450  NLPARRVIIRTPIFSGQPLDILTYKQMVGRAGRKGVDTMGESI-LVCKNSEK  500


 Score = 40.1 bits (92),  Expect = 0.098, Method: Composition-based stats.
 Identities = 16/65 (25%), Positives = 31/65 (48%), Gaps = 2/65 (3%)

Query  8    GVMPEIAQAVEEMDWLLPTDIQAESIPL--ILGGGDVLMAAETGSGKTGAFSIPVIQIVY  65
            G+   + +           + QAE + L  +L G +++ +A T +GKT    + +++ V 
Sbjct  74   GLPKAVLEKYHSFGVRKMFEWQAECLLLGHVLEGKNLVYSAPTSAGKTLVAELLILKRVL  133

Query  66   ETLKD  70
            ET K 
Sbjct  134  ETRKK  138


>sp|Q7SCC1|DCL2_NEUCR Dicer-like protein 2 OS=Neurospora crassa 
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / 
FGSC 987) OX=367110 GN=dcl-2 PE=2 SV=4
Length=1534

 Score = 72.5 bits (176),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 49/292 (17%), Positives = 91/292 (31%), Gaps = 21/292 (7%)

Query  332  QLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQI  391
             +  LE  +D V  TP            ++++   LV+   D       +D + R     
Sbjct  239  DIEKLEQVLDAVCRTP---TIHREELLAHVNRPEMLVVSYGDSGTDPTPTDLMTRFLEAY  295

Query  392  PQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPT--WVDLKGEDSVPDTVHHVVVP--  447
                   K   V++  A       +KL + I    T    +L+G  +    V   + P  
Sbjct  296  -HRLDISKDPDVLLLKAQRTERAREKLRQMITKKDTLAQKELRGVYNRALLVRREIGPWA  354

Query  448  ----VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE  503
                +      +   L +        +  +  R                K +  ++ +  
Sbjct  355  ADYYLTRTVSHMLAELERGEPPAQHRYIGEALRSIPIPAISKEPIQLSPKVQTLLKVLAS  414

Query  504  HKMDQA-IIFCRTKIDCDNLEQYFIQQGGGPDK--KGHQFSCVCL------HGDRKPHER  554
            H+ D   I+F + ++    +           D+           +      H D    E 
Sbjct  415  HQQDPVGIVFVKERVMVSIVTHIISTHPLTKDRYRTASMIGTASVPGKARNHMDMTKKED  474

Query  555  KQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRV  606
              +LE F+ G    L+ T V   GID+     VI    P   ++++ R GR 
Sbjct  475  MTSLEGFRLGRFNLLVATSVLEEGIDVPICNLVICFDEPSNIKSFIQRRGRA  526


 Score = 39.3 bits (90),  Expect = 0.17, Method: Composition-based stats.
 Identities = 19/87 (22%), Positives = 36/87 (41%), Gaps = 10/87 (11%)

Query  292  VEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV---AARDQL--SVLENGVDIVVGT  346
            + P+  LA Q    ++        P ++ +++ G     +  +Q     +   V IVV T
Sbjct  114  LTPTVALARQQHRVLQS-----QIPSVKAIMLCGQDGVDSWSEQAVWDAVLLNVRIVVST  168

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEAD  373
               L D  +   + L  +  +V+DEA 
Sbjct  169  YQILFDANAHSFVRLDSLSLIVIDEAH  195


>sp|Q5UYM9|HELS_HALMA ATP-dependent DNA helicase Hel308 OS=Haloarcula 
marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 
/ VKM B-1809) OX=272569 GN=hel308 PE=3 SV=1
Length=799

 Score = 72.1 bits (175),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 72/449 (16%), Positives = 140/449 (31%), Gaps = 45/449 (10%)

Query  249  FPPKDGFV--ALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPK---ALIVEPSRELAEQTL  303
            +PP+   V   +++  +        SG   + +   L +  +   AL + P R LA +  
Sbjct  26   YPPQAEAVEAGVTEGENLVASIPTASGKTLIAELAMLSSVARGGKALYIVPLRALASEKQ  85

Query  304  NNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQ  363
             + ++F++Y  +  +             +   L +  DIVV T  ++D LV      +  
Sbjct  86   ADFEEFEQYGLDIGVSTG------NYESEGGWLADK-DIVVATSEKVDSLVRNDAPWIED  138

Query  364  VRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFD-VKKLSEKI  422
            +  +V DE   +        +     ++ ++  D   LQ +  SAT+ + + +    +  
Sbjct  139  LTCVVTDEVHLVDDGERGPTLEVTLAKLRRLNPD---LQTVALSATIGNAEALATWLDAG  195

Query  423  MHFPTWVDLKGEDSVP-DTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANS  481
            +    W  +  +  V      H+      +          + I  D +    +T    NS
Sbjct  196  LVDSDWRPIDLQKGVHYGQALHLEDGSQQRLSVQNNEKQTAAIVRDTLEDDGSTLVFVNS  255

Query  482  PEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFS  541
                  A   L          E +   A I        + +      +            
Sbjct  256  RRNAEAAAGRLANTVRPHLSTEERDQLADI-------AEEIRDVSDTETSDDLADAVADG  308

Query  542  CVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG----VPYVINVT------  591
                H       R+   + F+   V+ +  T   A G++       V             
Sbjct  309  AAFHHAGLSRGHRELVEDAFRDRLVKVVCATPTLAAGVNTPSRRVVVRDWRRYDGSAGGM  368

Query  592  LPDEKQNYVHR-IGRVGRAERM--GLAISLVATEKE-------KVWYHVCSSRGKGCYNT  641
             P      VH+ +GR GR      G A+ + ++  E        VW      R K     
Sbjct  369  APLSVLE-VHQMMGRAGRPGLDPYGEAVLIASSHDEVDELFERYVWADPEPVRSKLAAEP  427

Query  642  RLKEDGGCTIWYNEMQLLSEIEEHLNCTI  670
             L+     T+     +    + E L  T+
Sbjct  428  ALRTHILATVASGFARSRKGLLEFLEQTL  456


>sp|Q8F8A9|UVRB_LEPIN UvrABC system protein B OS=Leptospira interrogans 
serogroup Icterohaemorrhagiae serovar Lai (strain 
56601) OX=189518 GN=uvrB PE=3 SV=1
Length=666

 Score = 72.1 bits (175),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 117/363 (32%), Gaps = 69/363 (19%)

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            P  L D      L       L++DE+   +       I  M         D  R Q +V 
Sbjct  321  PACLIDYFQGEFL-------LIVDESHVTI-----PQIGGMF------AGDRARKQTLV-  361

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
                  F  + L   + + P     + E   P T++    P   + ++  + + +    T
Sbjct  362  -----DFGFR-LPSALDNRPLNFQ-EFETLTPRTLYVSATPAEYEIEKSSKVVEQIIRPT  414

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
              +    + RP  N  E     I+                ++ ++   TK   ++L  Y+
Sbjct  415  GLLDPIVDVRPTKNQIEDLLVEIRKRIDA----------GERVLVTTLTKKMSEDLTDYY  464

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
             + G              LH + +  +R   +   +KG    LI  ++   G+DI  V  
Sbjct  465  EEIG---------LKVAYLHSEVETLDRVGIIRDLRKGIYDVLIGINLLREGLDIPEVSL  515

Query  587  VINVT-----LPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGK-----  636
            V  +           ++ +  IGR  R    G AI       + +   +  ++ +     
Sbjct  516  VAILDADKEGFLRNYKSLIQTIGRAAR-NVNGTAILYADKTTDSMAKAIEETKRRRKIQE  574

Query  637  ------GCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTY  690
                  G     +K++ G  I   E +  SE     +  +  VE   K    +F  K   
Sbjct  575  DHNLKFGITPLTIKKEVGDIIEREEKERTSE-----DLVLEDVEK--KFNSKKFPNKEVL  627

Query  691  GQK  693
             +K
Sbjct  628  KEK  630


>sp|Q72N95|UVRB_LEPIC UvrABC system protein B OS=Leptospira interrogans 
serogroup Icterohaemorrhagiae serovar copenhageni 
(strain Fiocruz L1-130) OX=267671 GN=uvrB PE=3 SV=1
Length=666

 Score = 72.1 bits (175),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 117/363 (32%), Gaps = 69/363 (19%)

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            P  L D      L       L++DE+   +       I  M         D  R Q +V 
Sbjct  321  PACLIDYFQGEFL-------LIVDESHVTI-----PQIGGMF------AGDRARKQTLV-  361

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
                  F  + L   + + P     + E   P T++    P   + ++  + + +    T
Sbjct  362  -----DFGFR-LPSALDNRPLNFQ-EFETLTPRTLYVSATPAEYEIEKSSKVVEQIIRPT  414

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
              +    + RP  N  E     I+                ++ ++   TK   ++L  Y+
Sbjct  415  GLLDPIVDVRPTKNQIEDLLVEIRKRIDA----------GERVLVTTLTKKMSEDLTDYY  464

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
             + G              LH + +  +R   +   +KG    LI  ++   G+DI  V  
Sbjct  465  EEIG---------LKVAYLHSEVETLDRVGIIRDLRKGIYDVLIGINLLREGLDIPEVSL  515

Query  587  VINVT-----LPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGK-----  636
            V  +           ++ +  IGR  R    G AI       + +   +  ++ +     
Sbjct  516  VAILDADKEGFLRNYKSLIQTIGRAAR-NVNGTAILYADKTTDSMAKAIEETKRRRKIQE  574

Query  637  ------GCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTY  690
                  G     +K++ G  I   E +  SE     +  +  VE   K    +F  K   
Sbjct  575  DHNLKFGITPLTIKKEVGDIIEREEKERTSE-----DLVLEDVEK--KFNSKKFPNKEVL  627

Query  691  GQK  693
             +K
Sbjct  628  KEK  630


>sp|Q6CQX2|MPH1_KLULA ATP-dependent DNA helicase MPH1 OS=Kluyveromyces 
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 
1267 / NRRL Y-1140 / WM37) OX=284590 GN=MPH1 PE=3 SV=2
Length=1002

 Score = 72.1 bits (175),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 37/87 (43%), Gaps = 1/87 (1%)

Query  547  GDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRV  606
                  ++K+ +  FKKG    L+CT +   G+DI  V  +I           + R+GR 
Sbjct  563  SGMNQKQQKKVISDFKKGIYNVLVCTSIGEEGLDIGEVDLIICFDSTSSPIKNIQRMGRT  622

Query  607  GRAERMGLAISLVATEKEKVWYHVCSS  633
            GR  R G  + L +  ++  +    + 
Sbjct  623  GRK-RDGRIVLLFSGNEKFKFEQAMND  648


 Score = 37.4 bits (85),  Expect = 0.67, Method: Composition-based stats.
 Identities = 18/86 (21%), Positives = 35/86 (41%), Gaps = 7/86 (8%)

Query  290  LIVEPSREL-AEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG  348
            +   P+R L A+Q    +        +  +   L+      R+++   +    +   TP 
Sbjct  148  IFTAPTRPLVAQQIKACLGITGIPYSDTAI---LLDKSRKNREEIWQQKR---VFFTTPQ  201

Query  349  RLDDLVSTGKLNLSQVRFLVLDEADG  374
             +++ +  G LN   V  LV+DEA  
Sbjct  202  VVENDLKRGVLNPKDVVLLVIDEAHR  227


>sp|Q042E2|UVRB_LACGA UvrABC system protein B OS=Lactobacillus 
gasseri (strain ATCC 33323 / DSM 20243 / BCRC 14619 / CIP 102991 
/ JCM 1131 / KCTC 3163 / NCIMB 11718 / NCTC 13722 / AM63) 
OX=324831 GN=uvrB PE=3 SV=1
Length=671

 Score = 71.7 bits (174),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 49/297 (16%), Positives = 91/297 (31%), Gaps = 29/297 (10%)

Query  408  ATLHSFDV----KKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            AT+             ++ +    +      D+ P  +      VN              
Sbjct  347  ATMPELKAMYNGDSARKQTLIDYGFRLPSALDNRPLKLEEFEKHVNQIMYVSATPGDYEL  406

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE-HKMDQAIIFCRTKIDCDNL  522
             +TD    +     G   PE+    IK    +      K   + ++  +   TK   ++L
Sbjct  407  NQTDHKVEQIIRPTGLLDPEIEVRPIKGQIDDLVGEINKRIDRNERVFVTTLTKKMAEDL  466

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH  582
              Y    G              LH D K  ER + +   + G    LI  ++   GID+ 
Sbjct  467  TDYLKDLG---------IKVRYLHSDIKTLERLEIIRDLRLGKFDVLIGINLLREGIDVP  517

Query  583  GVPYVINVT-----LPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKG  637
             V  V  +           +  V  IGR  R    G  I    +  + +   + ++  + 
Sbjct  518  EVSLVAILDADKEGFLRSTRPLVQTIGRAAR-NSNGKVIMYADSITDSMREAIDATERRR  576

Query  638  CYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIK-----VPVDEFDGKVT  689
                +  ++ G T       ++  I + ++ T    E + K     +  DE   K  
Sbjct  577  SLQMKFNKEHGITP----KTIVKPIRDVISITKDSDEKENKESFADLNFDELTKKQK  629


>sp|Q9CWU0|TDR12_MOUSE Putative ATP-dependent RNA helicase TDRD12 
OS=Mus musculus OX=10090 GN=Tdrd12 PE=1 SV=2
Length=1215

 Score = 72.1 bits (175),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 60/358 (17%), Positives = 118/358 (33%), Gaps = 31/358 (9%)

Query  210  KDLGLAFE--IPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIV  267
            +D+ +A E  IPP    +  FP           ++             ++         +
Sbjct  409  EDMKVAMEEMIPPEALQRNKFP-----GPSHTASYSWPPIARGCDMVVISHCGNDPLLYL  463

Query  268  KSQHSGNAQVTQTKFLP--NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLI-I  324
                +        K LP  N P A+IV P  + A+     +  +   + +  L  +L+ I
Sbjct  464  PPLLTILQMGGCYKSLPSRNGPLAVIVCPGWKKAQFIFELLGDYS--MSSRPLHPVLLTI  521

Query  325  GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI  384
            G      +   L  G D++V TP  L  L++   L   ++  LVLDE   +L    ++ +
Sbjct  522  GLHKDEAKNMKLPRGCDVIVTTPHSLLRLLTYRSLLFLRLCHLVLDEVH-MLFFEANEQM  580

Query  385  NRMHNQIPQVTSDGKR----LQVIVCSATLHSFDVKKLSEKIMHFP-TWVDLKGEDSVPD  439
              + +   +     +R     Q++      +   +  L  + M  P   +    E ++  
Sbjct  581  FAILDNFKKNVEVEERESAPHQIVAVGVHWNKH-IDHLVREFMKDPCVVITALEEAALYG  639

Query  440  TVHHVVVPVN--PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYA  497
            +V  VV       KT  L + L     +         +     +    S A +  K   +
Sbjct  640  SVQQVVHLCLECEKTSTLLQVLDFVPSQAQKTLIFTCSVAETETVCKGSPAEQGDKKTKS  699

Query  498  VRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERK  555
            V  + E          R       + +Y  +       + ++F+   L        R+
Sbjct  700  VLLLTE----------RNASHAVGILRYLERADAKIPSELYEFTAGVLEAKEDKKARR  747


>sp|Q1DY43|MPH1_COCIM ATP-dependent DNA helicase MPH1 OS=Coccidioides 
immitis (strain RS) OX=246410 GN=MPH1 PE=3 SV=1
Length=1110

 Score = 72.1 bits (175),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 57/166 (34%), Gaps = 9/166 (5%)

Query  508  QAIIFCRTKIDCDNLEQYFIQQGG--GPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGD  565
            + +IF   +   + + +   +      P     Q +     G      + + + +FK G 
Sbjct  698  RVMIFSHFRDSAEEIVRVLRKHQPFVRPHVFVGQANAKGSEG-MDQKTQLEVVGKFKTGT  756

Query  566  VRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK  625
               ++ T +   G+DI  V  +I           + R+GR GR  R G  I L++  KE+
Sbjct  757  YNTIVATSIGEEGLDIGEVDLIICYDGHSSPIRMLQRMGRTGRK-RAGNIILLLSKGKEE  815

Query  626  VWYHVCSSRGKGCYN-----TRLKEDGGCTIWYNEMQLLSEIEEHL  666
              Y       +         +R       +       +  E EE +
Sbjct  816  ESYSKAKDSYEKMQQLIASGSRFTFHTDKSSRIVPQDIQPEAEEKM  861


 Score = 42.8 bits (99),  Expect = 0.013, Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 4/87 (5%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP  347
            + + V P++ L  Q ++           P+ +  L+ G      +     +   +   TP
Sbjct  369  QIVFVAPTKPLVSQQVDACFHIA---GIPRSQTTLLTGNTPPGVRAEEWRSK-RVFFMTP  424

Query  348  GRLDDLVSTGKLNLSQVRFLVLDEADG  374
              + + + TG  +  ++  LV+DEA  
Sbjct  425  QTIMNDLKTGIADPKRIVLLVVDEAHR  451


>sp|Q7VLL3|UVRB_HAEDU UvrABC system protein B OS=Haemophilus ducreyi 
(strain 35000HP / ATCC 700724) OX=233412 GN=uvrB PE=3 
SV=1
Length=675

 Score = 71.7 bits (174),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 56/321 (17%), Positives = 105/321 (33%), Gaps = 41/321 (13%)

Query  417  KLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTR  476
            +L   + + P   + + E   P T++    P N + ++         I    V       
Sbjct  370  RLPSALDNRPLKFE-EFERLSPQTIYVSATPGNYELEK-----SNGDIIDQVVRPTGLLD  423

Query  477  PGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKK  536
            P      + S+   +L       A+ E    + +I   TK   ++L  Y  + G      
Sbjct  424  PIIEVRPVASQVDDVLSEIQQRVALDE----RVLITTLTKKMAEDLTDYLDEHG------  473

Query  537  GHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT-----  591
                    LH D    ER + +   + G    L+  ++   G+D+  V  V  +      
Sbjct  474  ---VRVRYLHSDIDTVERVEIIHDLRIGMFDVLVGINLLREGLDMPEVALVAILDADKEG  530

Query  592  LPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTI  651
                + + +  IGR  R    G AI             +  S  K    T  + +     
Sbjct  531  FLRSESSLIQTIGRAAR-NLNGKAILYAD--------RITHSMQKAITETERRREKQQK-  580

Query  652  WYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPT  711
             YN+   +  I + LN  + ++   + +   +   K     K A    SY  +       
Sbjct  581  -YNQEHNI--IPQALNKKVREL---LDIGQTDKQKKGKQAVKIAEQSASYTPNAPKSRQA  634

Query  712  VQ-ELAALEKEAQTSFLHLGY  731
            ++ EL  L ++ Q     L +
Sbjct  635  LEKELKQLTQQMQKLAKDLEF  655


>sp|A1CBC9|DCL1_ASPCL Dicer-like protein 1 OS=Aspergillus clavatus 
(strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / 
NRRL 1 / QM 1276 / 107) OX=344612 GN=dcl1 PE=3 SV=2
Length=1534

 Score = 72.1 bits (175),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 50/256 (20%), Positives = 85/256 (33%), Gaps = 17/256 (7%)

Query  421  KIMHFPTWVDLKGEDSVPDT---VHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRP  477
            +      W+    +D +P     V+ +       T+R       + I+      K +T  
Sbjct  379  RWCSDRAWLYALADDVLPKLEGHVNKLAESTAAATERDMAFKEITLIKEASNIVKAHTFN  438

Query  478  GANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKG  537
                P   S  +++L+ E +          + IIF + +     L + F        + G
Sbjct  439  DPEFPGELSPKVRLLQTELSKHF-SHAPETKCIIFTQKRYTAKTLHELFTILSIPHLRPG  497

Query  538  HQFSCVC-LHGDRKPHERKQNLE--RFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD  594
                      G      R+Q L   +F+KG++  L  T VA  G+DI     V+   L  
Sbjct  498  VLIGVRSGDIGGMNITFRQQFLALVKFRKGEINCLFATSVAEEGLDIPDCNLVVRFDLYH  557

Query  595  EKQNYVHRIGRVGRAERMGLAISLVATEKE------KVWYHVCSSRGKGCYNTRLKEDGG  648
                YV   GR  R      A S+V  +        +       +    C    L ED  
Sbjct  558  TLIQYVQSRGR-ARHYHSTYA-SMVEKDNSDHEARLREVREAEKTMQNFCE--TLPEDRI  613

Query  649  CTIWYNEMQLLSEIEE  664
                 +++  L + EE
Sbjct  614  LHGNDHDLDSLLQHEE  629


>sp|Q9VUV9|U520_DROME U5 small nuclear ribonucleoprotein 200 kDa 
helicase OS=Drosophila melanogaster OX=7227 GN=Brr2 PE=2 
SV=4
Length=2142

 Score = 72.1 bits (175),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 62/436 (14%), Positives = 143/436 (33%), Gaps = 52/436 (12%)

Query  254  GFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYI  313
                  K     +   +  G              K + V P + L       +  F + +
Sbjct  503  APTGAGKTNVALLTMMREIGKHINEDGTINAQDFKIIYVAPMKSL---VQEMVGNFGRRL  559

Query  314  DNPKLRELLIIGGVAA-RDQLSVLENGVDIVVGTPGRLDDLVSTG---KLNLSQVRFLVL  369
                L    + G     R+Q++       ++V TP +  D+++     +  +S VR +++
Sbjct  560  ACYNLTVSELTGDHQLTREQIAA----TQVIVCTPEK-WDIITRKGGERTFVSLVRLVII  614

Query  370  DEADGLLSQGYSDFINRMH-NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTW  428
            DE   LL       +  +    I  + +  + ++++  SATL ++  + ++  +   P  
Sbjct  615  DEIH-LLHDERGPVLEALVARTIRNIETTQEEVRLVGLSATLPNY--QDVATFLRVKPDK  671

Query  429  VDLKGEDSV-PDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSE  487
                 ++S  P ++    + V  K     + L +  +  + V+ K     G N   ++  
Sbjct  672  GLFYFDNSYRPVSLEQQYIGVTEK-----KALKRFQVMNEIVYEKTMEHAGRNQVLVFVH  726

Query  488  AIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLH-  546
            + K              + D    F +       + +   +Q    + K        +H 
Sbjct  727  SRKETGKTARAVRDMCLEQDTLGSFLKEGSASMEVLRTEAEQVKNTELKELLPYGFAIHH  786

Query  547  GDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVIN----VTLPD------EK  596
                  +R    + F    ++ L+ T   A G+++     +I                  
Sbjct  787  AGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGRWVELSA  846

Query  597  QNYVHRIGRVGR--AERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYN  654
             + +  +GR GR   +  G  I +    + + +  + + +                    
Sbjct  847  LDVLQMLGRAGRPQYDTKGEGILITNHSELQFYLSLLNQQ-----------------LPI  889

Query  655  EMQLLSEIEEHLNCTI  670
            E Q +S++ + LN  I
Sbjct  890  ESQFISKLPDMLNAEI  905


>sp|Q8AA95|UVRB_BACTN UvrABC system protein B OS=Bacteroides thetaiotaomicron 
(strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 
10774 / NCTC 10582 / VPI-5482 / E50) OX=226186 GN=uvrB PE=3 
SV=1
Length=677

 Score = 71.7 bits (174),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 49/264 (19%), Positives = 86/264 (33%), Gaps = 33/264 (13%)

Query  431  LKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIK  490
            LK E+    T   + V   P     +E +    I  + V                   I 
Sbjct  375  LKFEEFEEMTKQVIYVSATPAE---YELIQSEGIVVEQVIRPTGLLDPVIEVRPSLNQID  431

Query  491  ILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRK  550
             L  E  +R  KE   ++ ++   TK   + L +Y +          +   C  +H D  
Sbjct  432  DLMEEIQLRIEKE---ERVLVTTLTKRMAEELTEYLLN---------NNVRCNYIHSDVD  479

Query  551  PHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV--HRI-----  603
              ER + ++  ++G    LI  ++   G+D+  V  V  +    +K+ ++  HR      
Sbjct  480  TLERVKIMDDLRQGVYDVLIGVNLLREGLDLPEVSLVAILD--ADKEGFLRSHRSLTQTA  537

Query  604  GRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLL----  659
            GR  R    G  I       + +   +  +  +        E  G T    +        
Sbjct  538  GRAAR-NVNGKVIMYADKITDSMRLTIDETNRRREKQLAYNEANGITPQQIKKARNLSVF  596

Query  660  ----SEIEEHLNCTISQVEPDIKV  679
                SE +E L    + VEP    
Sbjct  597  GSPGSEADELLKEKHAYVEPSSPN  620


>sp|D4A2Z8|DHX36_RAT ATP-dependent DNA/RNA helicase DHX36 OS=Rattus 
norvegicus OX=10116 GN=Dhx36 PE=1 SV=1
Length=1000

 Score = 71.7 bits (174),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 57/336 (17%), Positives = 105/336 (31%), Gaps = 55/336 (16%)

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            G   R Q  +      I+  T G +   + +    LS V  +VLDE      +     + 
Sbjct  283  GYQIRLQSRLPRKQGSILYCTTGIILQWLQSDS-RLSSVSHIVLDEIH---ERNLQSDV-  337

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFD------------------------VKKLSEK  421
             +   I  +      L+VI+ SATL++                          ++ + EK
Sbjct  338  -LMTVIKDLLHFRSDLKVILMSATLNAEKFSEYFGNCPMIHIPGFTFPVVEYLLEDIIEK  396

Query  422  IMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANS  481
            I +FP     +             V    K ++      +      ++  + +       
Sbjct  397  IRYFPE--QKEHRSQFKRGFMQGHVNRQEKEEKEAIYKERWPAYIKELQTRYSASTIDVL  454

Query  482  PEMWSEAIKI-LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540
              M  + + + L        + E +    ++F     +   L    + Q      K  +F
Sbjct  455  EMMDDDKVDLNLIAALIRYIVLEEEDGAILVFLPGWDNISTLHDLLMSQ---VMFKSDRF  511

Query  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVI--------NVTL  592
              + LH       + Q  ++   G  + +I T++A   I I  V YVI        +   
Sbjct  512  LIIPLHSLMPTVNQTQVFKKTPPGVRKIVIATNIAETSITIDDVVYVIDGGKIKETHFDT  571

Query  593  PDEKQN----YV------HRIGRVGRAERMGLAISL  618
             +        +V       R GR GR  + G    L
Sbjct  572  QNNISTMSAEWVSKANAKQRKGRAGRV-QPGHCYHL  606


>sp|O51528|RECG_BORBU ATP-dependent DNA helicase RecG OS=Borreliella 
burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 
/ B31) OX=224326 GN=recG PE=3 SV=1
Length=686

 Score = 71.3 bits (173),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 62/421 (15%), Positives = 137/421 (33%), Gaps = 83/421 (20%)

Query  203  VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAP  262
            ++F    +   + F     +    L          L F   E++     +  F   S  P
Sbjct  228  LQFFSRYRSSKILFREKKDLSKDLLEKVVS----SLPFELTEDQKISIDEIFFDLNSSKP  283

Query  263  DGYIVK-SQHSGNAQVTQTKFLP---NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKL  318
               +++    SG   V     LP      +   + P+  LA Q  +N+       +   +
Sbjct  284  MNRLLQGDVGSGKTLVALLSGLPLIEAGYQVAFMAPTDLLARQHYDNLSNILAPFN---I  340

Query  319  RELLIIGGVAARDQLSVLENGVD----IVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADG  374
               L+ G +  +D+   LE+  +    ++VGT       +        ++ ++++DE   
Sbjct  341  SMTLLTGSLRKKDKEQALESIRNGTSGLIVGT-----HAIFYESTEFKRLAYVIIDEQHK  395

Query  375  LLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE  434
                   +           + + G+ + +++ SAT        L+       +++    +
Sbjct  396  FGVVQREE-----------LKNKGEGVDMLLMSATPIPRSFA-LTLFGDLEVSFIKTLPK  443

Query  435  DSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG  494
              +P T     +  +   D+++E L K  ++   V+        +   E+       LK 
Sbjct  444  GRLPIT---TYLARHGNEDKVYEFLRKELLKGHQVYFVYPLISSSEKFELKDVNNMCLKL  500

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
            +               +F                          ++    LH       +
Sbjct  501  KE--------------VF-------------------------GEYVVDMLHSKLPSDLK  521

Query  555  KQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNY----VHRI-GRVGRA  609
            ++ ++ F    V  L+ T V   GID      ++     +  + +    +H+I GRVGR+
Sbjct  522  EEIMKNFYSKKVDILVATSVIEVGIDCPNATCMVV----EHAERFGLSTLHQIRGRVGRS  577

Query  610  E  610
             
Sbjct  578  N  578


>sp|C4K6N8|UVRB_HAMD5 UvrABC system protein B OS=Hamiltonella 
defensa subsp. Acyrthosiphon pisum (strain 5AT) OX=572265 GN=uvrB 
PE=3 SV=1
Length=671

 Score = 71.3 bits (173),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 62/370 (17%), Positives = 121/370 (33%), Gaps = 80/370 (22%)

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI--  404
            P  L D + +  L       LV+DE+   +       I  M+        D  R Q +  
Sbjct  322  PPTLFDYLPSEGL-------LVIDESHVTI-----PQIGGMYK------GDRSRKQTLVE  363

Query  405  ----VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLG  460
                + SA         L  + M F  +     E   P T++    P   +  +    L 
Sbjct  364  YGFRLPSA---------LDNRPMRFEEF-----ESLAPQTIYISATPGPYELGKSAGELI  409

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCD  520
            +  +R   +       P      + ++   +L        I E    + ++   TK   +
Sbjct  410  EQVVRPTGL-----LDPVIEVRPVATQVDDLLSEIRQRVVIDE----RVLVTTLTKRMAE  460

Query  521  NLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGID  580
            +L +Y  +QG              LH D    ER + +   + G+   L+  ++   G+D
Sbjct  461  DLTEYLAEQGE---------RVRYLHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLD  511

Query  581  IHGVPYVINVT-----LPDEKQNYVHRIGRVGRAERMGLAISL-----------VATEKE  624
            +  V  V  +          +++ +  IGR  R    G AI             +   + 
Sbjct  512  MPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NLNGKAILYGDKITVSMKKAIDETER  570

Query  625  KVWYHVCSSRGKGCYNTRLKEDGGCTIWYNE-------MQLLSEIEEHLNCTISQVEPDI  677
            +       ++ KG    +L++     +   +        +  + +EE+     +     I
Sbjct  571  RRKKQESYNKEKGIVPKKLEKKIRDILELGQSYTKGKARKRTTTLEENSTNYTALSPKAI  630

Query  678  KVPVDEFDGK  687
            K  +DE + K
Sbjct  631  KKKIDELEQK  640


>sp|P53327|SLH1_YEAST RQC trigger complex helicase SLH1 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 
GN=SLH1 PE=1 SV=2
Length=1967

 Score = 72.1 bits (175),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 55/316 (17%), Positives = 110/316 (35%), Gaps = 18/316 (6%)

Query  278  TQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE  337
             +     +  K + V P + LA + ++   +F K +    ++   + G +       +L 
Sbjct  338  NEIDIQYDDFKVIYVAPLKALAAEIVD---KFSKKLAPFNIQVRELTGDMQLTK-AEILA  393

Query  338  NGVDIVVGTPGRLDDLVSTGKLN----LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ  393
                ++V TP +  D+V+         +S+V+ L++DE   L     S     +   + Q
Sbjct  394  T--QVIVTTPEK-WDVVTRKANGDNDLVSKVKLLIIDEVHLLHEDRGSVIETLVARTLRQ  450

Query  394  VTSDGKRLQVIVCSATLHS-FDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKT  452
            V S    +++I  SATL +  DV       ++    +    +   P  +   ++    K 
Sbjct  451  VESSQSMIRIIGLSATLPNFMDVADF--LGVNRQIGMFYFDQSFRPKPLEQQLLGCRGKA  508

Query  453  DRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF  512
                 R  K +I                   ++  + K                 +  +F
Sbjct  509  G---SRQSKENIDKVAYDKLSEMIQRGYQVMVFVHSRKETVKSARNFIKLAESNHEVDLF  565

Query  513  CRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICT  572
                I+ D   +  ++      K+  QF     H      +R    + FK G ++ L CT
Sbjct  566  APDPIEKDKYSRSLVKNRDKDMKEIFQFGFGIHHAGMARSDRNLTEKMFKDGAIKVLCCT  625

Query  573  DVAARGIDIHGVPYVI  588
               A G+++     VI
Sbjct  626  ATLAWGVNLPA-DCVI  640


 Score = 65.9 bits (159),  Expect = 1e-09, Method: Composition-based stats.
 Identities = 66/429 (15%), Positives = 144/429 (34%), Gaps = 47/429 (11%)

Query  228   FPACVLKNAELKFNFGEEEFKFPPKDGFVAL-SKAPDGYIVKSQHSGNAQVTQTKFLP--  284
              P   L+N  ++  +  + F       F  L +   + ++     SG   V +       
Sbjct  1121  LPTSALQNPLIESIYPFKYFNPMQTMTFYTLYNTNENAFVGSPTGSGKTIVAELAIWHAF  1180

Query  285   ---NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVD  341
                   K + + P + L  + +++ ++  K       + + + G              V 
Sbjct  1181  KTFPGKKIVYIAPMKALVRERVDDWRK--KITPVTGDKVVELTGDSLPDP------KDVH  1232

Query  342   ---IVVGTPGRLDDLVST--GKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTS  396
                IV+ TP + D +      +  +  V  +++DE   LL+      +  + +++  ++S
Sbjct  1233  DATIVITTPEKFDGISRNWQTRKFVQDVSLIIMDEIH-LLASDRGPILEMIVSRMNYISS  1291

Query  397   DGKRLQVI--VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDR  454
               K+   +  + +A  +++D+        H      L    S    V   +       + 
Sbjct  1292  QTKQPVRLLGMSTAVSNAYDMAGWLGVKDH-----GLYNFPSSVRPVPLKMYIDGFPDNL  1346

Query  455   LWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR  514
              +  L K+  +   +  K ++        + S     L     +         +   F  
Sbjct  1347  AFCPLMKTMNKPVFMAIKQHSPDKPALIFVASRRQTRLTALDLIHLCGMEDNPRR--FLN  1404

Query  515   TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV  574
                D + L+ Y  Q      K   QF     H      +R  + + F+K  ++ LI T  
Sbjct  1405  I-DDEEELQYYLSQVTDDTLKLSLQFGIGLHHAGLVQKDRSISHQLFQKNKIQILIATST  1463

Query  575   AARGIDIHGVPYVI---NV---------TLPDEKQNYVHRIGRVGR--AERMGLAISLVA  620
              A G+++     +I               +  +  + +  +GR GR   +  G AI    
Sbjct  1464  LAWGVNLPAHLVIIKGTQFFDAKIEGYRDM--DLTDILQMMGRAGRPAYDTTGTAIVY-T  1520

Query  621   TEKEKVWYH  629
              E +K++Y 
Sbjct  1521  KESKKMFYK  1529


>sp|Q0UI93|DCL1_PHANO Dicer-like protein 1 OS=Phaeosphaeria nodorum 
(strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=DCL1 
PE=3 SV=2
Length=1522

 Score = 71.7 bits (174),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 55/334 (16%), Positives = 117/334 (35%), Gaps = 19/334 (6%)

Query  387  MHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLS-EKIMHFPTWVDLKGEDSVPDTVHHVV  445
            +H ++     D    + +  +A LH+ ++ + + +    F    +   +  + + + +  
Sbjct  300  LHQKVKAKYGDVAPFRKLFITAKLHASELGRWASDMYWSFAFADEQSRKLQIREELKYNR  359

Query  446  VPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK  505
               +     L  ++ +    T  V   +   P  +  ++ S+ +K+          +   
Sbjct  360  SKRDWSAAELDAQMARLKEATAFVQQYEIGAPTLSEQDLSSKVMKLQYWLNLYY--ERTT  417

Query  506  MDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNL--ERFKK  563
            + + I+F   +     L+  F   GG               G+     R Q L  ++F++
Sbjct  418  LARCIVFVEKRHTAQLLKLIFDHIGGPNLHCDVLVGINNRAGEENVSLRSQILTLQKFRR  477

Query  564  GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK  623
            G++  L  T VA  G+DI     V+   L      YV   GR  R  R    + ++  E 
Sbjct  478  GELNCLFATSVAEEGLDIPQCNLVVRFDLYRTMIGYVQSRGR-ARH-RNSKYLHMLEAEN  535

Query  624  EKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDE  683
            ++    + ++R              C    ++ Q L ++E+     I+  +       DE
Sbjct  536  KEHTERLMNARHDENIMREF-----CKDLTHDRQ-LGDVEQEKAELIALEDKLFPSYTDE  589

Query  684  FDG-KVTYGQKRAAGG-----GSYKGHVDILAPT  711
              G K+TY    +             H  +  PT
Sbjct  590  KSGAKLTYRSSLSILSHFVATYPSPDHNTMAQPT  623


>sp|Q8DHC6|UVRB_THEVB UvrABC system protein B OS=Thermosynechococcus 
vestitus (strain NIES-2133 / IAM M-273 / BP-1) OX=197221 
GN=uvrB PE=3 SV=1
Length=668

 Score = 71.3 bits (173),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 36/193 (19%), Positives = 71/193 (37%), Gaps = 19/193 (10%)

Query  494  GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHE  553
              Y    ++  + ++ ++   TK   ++L +YF ++G              LH +    E
Sbjct  433  DLYGEIRLRCDRQERVLVTTLTKRMAEDLTEYFQERG---------VRVRYLHSEINAIE  483

Query  554  RKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNY-------VHRIGRV  606
            R + LE  ++GD   LI  ++   G+D+  V  V  +    +K+ +       +  IGR 
Sbjct  484  RIEILEALRQGDFDVLIGVNLLREGLDLPEVSLVAILD--ADKEGFLRAERSLIQTIGRA  541

Query  607  GRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHL  666
             R  R G AI    T  E +   +  +  +        +  G        +  + I   L
Sbjct  542  ARHVR-GQAILYADTLTESMQKAIQETERRRAIQLAYNQAHGIIPQPIVKKTSNAILAFL  600

Query  667  NCTISQVEPDIKV  679
            + +       + V
Sbjct  601  DVSRRLNAESVPV  613


>sp|O67708|UVRB_AQUAE UvrABC system protein B OS=Aquifex aeolicus 
(strain VF5) OX=224324 GN=uvrB PE=3 SV=1
Length=663

 Score = 71.3 bits (173),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 84/260 (32%), Gaps = 28/260 (11%)

Query  435  DSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG  494
            + +   ++    P + + +R    + +    T  +      RP  N  E   + IK +K 
Sbjct  387  ERINQVIYVSATPGDWELERSEAVVEQIVRPTGLLDPVVEVRPKMNQLENLVKEIKEVKK  446

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
                      + ++A++   TK   + +  Y  ++         +     +H +    ER
Sbjct  447  ----------RKERALVLTTTKRLAEEIADYLTER---------KIRAKYMHSELDAIER  487

Query  555  KQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT-----LPDEKQNYVHRIGRVGRA  609
             Q +   ++G +  ++  ++   G+D+  V  V  +           Q  +  IGR  R 
Sbjct  488  AQLIRELREGSIDVIVGVNLLREGLDLPEVSLVAIMDADKEGFLRSYQALIQTIGRAAR-  546

Query  610  ERMGLAISL---VATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHL  666
               G AI     +    EK        R       +       +I     +LL+  E   
Sbjct  547  NIHGKAILYADRITKAMEKAIQETQRRRKIQEEFNKKHGITPKSIKKPVKELLAIEELDY  606

Query  667  NCTISQVEPDIKVPVDEFDG  686
                 ++   +K   D    
Sbjct  607  VSVPEELPKGVKSEEDILKK  626


>sp|Q815I3|UVRB_BACCR UvrABC system protein B OS=Bacillus cereus 
(strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 
15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) OX=226900 GN=uvrB 
PE=3 SV=1
Length=658

 Score = 70.9 bits (172),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 61/348 (18%), Positives = 112/348 (32%), Gaps = 53/348 (15%)

Query  345  GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI  404
             TP  L D      L       +V+DE+   +       +  M+N       D  R QV+
Sbjct  320  ATPYTLLDYFPKDFL-------IVMDESHVSV-----PQVRAMYN------GDQARKQVL  361

Query  405  VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI  464
            V          + L   + + P   D + E+     ++    P   + ++  E + +   
Sbjct  362  V------DHGFR-LPSALDNRPLTFD-EFEEKTNQVIYVSATPGPYELEQSPEVIEQIIR  413

Query  465  RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ  524
             T  +    + RP           I  L GE   R  K    ++ +I   TK   ++L  
Sbjct  414  PTGLLDPPIDIRPIEGQ-------IDDLLGEIQDRIAKN---ERVLITTLTKKMSEDLTD  463

Query  525  YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV  584
            Y    G              LH + K  ER + +   + G    L+  ++   G+DI  V
Sbjct  464  YLKDVG---------IKVTYLHSEIKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEV  514

Query  585  PYVINVT-----LPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCY  639
              V  +          +++ +  IGR  R    G  I       + +   +  ++ +   
Sbjct  515  SLVAILDADKEGFLRSERSLIQTIGRAAR-NENGRVIMYADRITKSMGIAIEETKRRRSI  573

Query  640  NTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGK  687
                 E+ G T    +  +   I         ++E     P  +   K
Sbjct  574  QEAYNEEHGITPKTIQKGVRDVI--RATTAAEEIETYEATPAKKMTKK  619


>sp|Q92H58|MFD_RICCN Transcription-repair-coupling factor OS=Rickettsia 
conorii (strain ATCC VR-613 / Malish 7) OX=272944 
GN=mfd PE=3 SV=1
Length=1122

 Score = 71.3 bits (173),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 66/420 (16%), Positives = 136/420 (32%), Gaps = 74/420 (18%)

Query  214  LAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSG  273
            + F++  + K  A FP    ++  +  N  +E+ +       +       G    +    
Sbjct  561  VEFDLEEYDKFCANFPFSETEDQLIAINDIKEDLRNGMLMDRLICGDVGFGKTEVAMR-A  619

Query  274  NAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQL  333
               V ++    + P+  +V P+  L  Q  +   +  K       +   +I    A+   
Sbjct  620  VFMVAKS-LNEHLPQVAVVVPTTILCSQHFSRFIERFKGFGLNIKQLSSVISSKEAKIIR  678

Query  334  SVLENG-VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP  392
            S LE+G ++I++GT       +    +    ++ L++DE +     G  +F+  + +   
Sbjct  679  SELESGKINIIIGT-----HSLLHKNIKFFNLKLLIIDE-EQHFGVGQKEFLKSLKS---  729

Query  393  QVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKT  452
                      V+  SAT                           +P T+   +  +   +
Sbjct  730  -------SSHVLAMSAT--------------------------PIPRTLQMSMTGLKELS  756

Query  453  DRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF  512
                  L +  + T  +         A   E +                   +  ++   
Sbjct  757  IIATPPLNRLEVHTSVMPYDPVIIRDALLREHF-------------------RGGRSFYV  797

Query  513  CRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICT  572
                 D +++ +   Q       K         +G   P +  + +  F  G    L+ T
Sbjct  798  VPRIKDIEDIAKQLKQIVPELSYKIA-------YGKMTPSKIDEVMSEFYAGKFDILVST  850

Query  573  DVAARGIDIHGVPYVI--NVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
             +   GIDI     +I  N  +    Q Y  R GR+GR +  G A   VA+ K+   + +
Sbjct  851  TIIESGIDIAEANTMIIHNADMLGLSQLYQLR-GRIGRGKMRGYAYLTVASHKKMTSHSL  909


>sp|Q821H8|UVRB_CHLCV UvrABC system protein B OS=Chlamydia caviae 
(strain ATCC VR-813 / DSM 19441 / 03DC25 / GPIC) OX=227941 
GN=uvrB PE=3 SV=1
Length=656

 Score = 70.9 bits (172),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 44/335 (13%), Positives = 100/335 (30%), Gaps = 54/335 (16%)

Query  367  LVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI------VCSATLHSFDVKKLSE  420
            LV+DE+   L       I  M+        D  R Q +      + SA  +     + ++
Sbjct  330  LVIDESHQTL-----PQIRAMYR------GDLSRKQSLVEYGFRLPSAYDNRPLTYEEAQ  378

Query  421  KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480
            K  H   +V     ++           +N     + E++ +     D +           
Sbjct  379  KYFHNVIYVSATPGET----------ELNESQGHIVEQIIRPTGIPDPI-----------  417

Query  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540
             PE+     ++      +R       ++ ++   TK   +++  +  +            
Sbjct  418  -PEIRPATGQVDDLLEEIRKRLSKSQEKILVISITKKLAEDIAAFLSEL---------DI  467

Query  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT-----LPDE  595
            +   LH   +  ER + L   + G++  LI  ++   G+D+  V  V  +          
Sbjct  468  AAAYLHSGIETAERTRILADLRLGNIDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRS  527

Query  596  KQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNE  655
              + +   GR  R    G  I     +   +   +  +  +        +    T     
Sbjct  528  TSSLIQFCGRAAR-NVEGKVIFYADQKTRSIEQTLKETERRRQIQLDYNKANNITPKPII  586

Query  656  MQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTY  690
              + +          SQ      + + E +  +  
Sbjct  587  KAIFANPIPQGGKKESQEPAKTPLSIKELEKLIKK  621


>sp|Q1MTR1|IRC3_SCHPO Putative mitochondrial ATP-dependent helicase 
irc3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) 
OX=284812 GN=irc3 PE=3 SV=2
Length=606

 Score = 70.5 bits (171),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 59/327 (18%), Positives = 107/327 (33%), Gaps = 49/327 (15%)

Query  283  LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDI  342
             PN+ + LI+   +ELA Q L + ++       P     + +G   A           D+
Sbjct  74   RPNSEQCLILVHRKELALQALKHCRE-----SLPNKSIEIDMGNQCASGLA-------DV  121

Query  343  VVGTPGRLDDLVSTGKLNLS--QVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR  400
             V +   +  L +   L  +    + L+ DE   + S  Y     R+        S+  +
Sbjct  122  TVAS---VFSLKNERLLKYNPLNFKLLIFDEVHHMASPSY----LRILEH-FGAESEKSK  173

Query  401  LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLG  460
            + VI  +ATL   D K L+                   D + +    V+   D       
Sbjct  174  VNVIGLTATLFRADGKGLA----------------CGLDEIVYHRHFVDMIKDNWLVEPK  217

Query  461  KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ--AIIFCRTKID  518
              +I+        ++    +  ++  EA          RA  EH  ++   ++FC     
Sbjct  218  VINIKWSTDLVLADSSSFLDQEKLKKEAQSEKAIFEIPRAWLEHASNRSSTLVFCINVEH  277

Query  519  CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG  578
               +   F + G              L G+    ER+  ++ F+K     L+   V   G
Sbjct  278  SLKVCNAFRKLG---------IDARALFGETNDSERETLIQDFRKKKFPVLVNCMVLTEG  328

Query  579  IDIHGVPYVINVTLPDEKQNYVHRIGR  605
             DI  +  ++              IGR
Sbjct  329  TDIPNIDCLMIARPTSSPNLLTQMIGR  355


>sp|Q7MM80|UVRB_VIBVY UvrABC system protein B OS=Vibrio vulnificus 
(strain YJ016) OX=196600 GN=uvrB PE=3 SV=2
Length=676

 Score = 70.5 bits (171),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 92/270 (34%), Gaps = 27/270 (10%)

Query  417  KLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTR  476
            +L   + + P   + + E   P T+     P N + ++    +       D V       
Sbjct  368  RLPSALDNRPLKFE-EFEALAPQTIFVSATPGNYELEKSAGEIA------DQVVRPTGLL  420

Query  477  PGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKK  536
                     +  +  L  E  +RA+K+   ++ ++   TK   ++L +Y  +        
Sbjct  421  DPVLEVRPVATQVDDLLSEIRIRAVKD---ERVLVTTLTKRMAEDLTEYLHE--------  469

Query  537  GHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT-----  591
             H      LH D    ER + +   + G+   L+  ++   G+D+  V  V  +      
Sbjct  470  -HDVKVRYLHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG  528

Query  592  LPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTI  651
                +++ +  IGR  R    G AI    +  + +   +  +  +        E  G   
Sbjct  529  FLRSERSLIQTIGRAAR-NLHGKAILYADSITKSMKKAMDETERRREKQQAYNEKMGIQP  587

Query  652  WYNEMQL--LSEIEEHLNCTISQVEPDIKV  679
               +  +  + E+ +       +V   + +
Sbjct  588  QALKRNIKDIMELGDITKSRKQKVSKTVPL  617


>sp|Q8D891|UVRB_VIBVU UvrABC system protein B OS=Vibrio vulnificus 
(strain CMCP6) OX=216895 GN=uvrB PE=3 SV=1
Length=676

 Score = 70.5 bits (171),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 92/270 (34%), Gaps = 27/270 (10%)

Query  417  KLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTR  476
            +L   + + P   + + E   P T+     P N + ++    +       D V       
Sbjct  368  RLPSALDNRPLKFE-EFEALAPQTIFVSATPGNYELEKSAGEIA------DQVVRPTGLL  420

Query  477  PGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKK  536
                     +  +  L  E  +RA+K+   ++ ++   TK   ++L +Y  +        
Sbjct  421  DPVLEVRPVATQVDDLLSEIRIRAVKD---ERVLVTTLTKRMAEDLTEYLHE--------  469

Query  537  GHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT-----  591
             H      LH D    ER + +   + G+   L+  ++   G+D+  V  V  +      
Sbjct  470  -HDVKVRYLHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG  528

Query  592  LPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTI  651
                +++ +  IGR  R    G AI    +  + +   +  +  +        E  G   
Sbjct  529  FLRSERSLIQTIGRAAR-NLHGKAILYADSITKSMKKAMDETERRREKQQAYNEKMGIQP  587

Query  652  WYNEMQL--LSEIEEHLNCTISQVEPDIKV  679
               +  +  + E+ +       +V   + +
Sbjct  588  QALKRNIKDIMELGDITKSRKQKVSKTVPL  617


>sp|P32639|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=BRR2 
PE=1 SV=2
Length=2163

 Score = 71.3 bits (173),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 64/411 (16%), Positives = 144/411 (35%), Gaps = 56/411 (14%)

Query  281  KFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAA-RDQLSVLENG  339
            K   +A K + + P + L       +++F++ +    ++   + G     R Q+    + 
Sbjct  549  KLNLSAFKIVYIAPLKAL---VQEQVREFQRRLAFLGIKVAELTGDSRLSRKQI----DE  601

Query  340  VDIVVGTPGRLDDLVSTGKLNLS---QVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTS  396
              ++V TP +  D+ +    NL+    VR L++DE   LL       +  +  +    + 
Sbjct  602  TQVLVSTPEK-WDITTRNSNNLAIVELVRLLIIDEIH-LLHDDRGPVLESIVARTFWASK  659

Query  397  DGKR-LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRL  455
             G+   ++I  SATL +++      + +  P       + S          P++ +   +
Sbjct  660  YGQEYPRIIGLSATLPNYED---VGRFLRVPKEGLFYFDSSFRP------CPLSQQFCGI  710

Query  456  WERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM-DQAIIFCR  514
             ER     ++  +    +      N        +   K         ++K  ++ I    
Sbjct  711  KERNSLKKLKAMNDACYEKVLESINEGNQIIVFVHSRKETSRTATWLKNKFAEENITHKL  770

Query  515  TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCL---HGDRKPHERKQNLERFKKGDVRFLIC  571
            TK D  + +    +     D    +     +   H      +R  + + F  G ++ L+C
Sbjct  771  TKNDAGSKQILKTEAANVLDPSLRKLIESGIGTHHAGLTRSDRSLSEDLFADGLLQVLVC  830

Query  572  TDVAARGIDIHGVPYVIN----VTLPD------EKQNYVHRIGRVG--RAERMGLAISLV  619
            T   A G+++     +I      +           Q+ +  +GR G  R +  G  I + 
Sbjct  831  TATLAWGVNLPAHTVIIKGTDVYSPEKGSWEQLSPQDVLQMLGRAGRPRYDTFGEGIIIT  890

Query  620  ATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTI  670
                 + +  V + +                    E Q +S++ ++LN  +
Sbjct  891  DQSNVQYYLSVLNQQ-----------------LPIESQFVSKLVDNLNAEV  924


 Score = 37.8 bits (86),  Expect = 0.55, Method: Composition-based stats.
 Identities = 13/66 (20%), Positives = 27/66 (41%), Gaps = 1/66 (2%)

Query  9    VMPEIAQAVEEMDWLLPTDIQAESIPLILGG-GDVLMAAETGSGKTGAFSIPVIQIVYET  67
            +     +A    +      IQ++       G  ++L+ A TGSGKT    + V++ +   
Sbjct  483  LPDWCQEAFPSSETTSLNPIQSKVFHAAFEGDSNMLICAPTGSGKTNIALLTVLKALSHH  542

Query  68   LKDQQE  73
               + +
Sbjct  543  YNPKTK  548


>sp|A7HKC0|UVRB_FERNB UvrABC system protein B OS=Fervidobacterium 
nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) OX=381764 
GN=uvrB PE=3 SV=1
Length=661

 Score = 70.5 bits (171),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 60/178 (34%), Gaps = 15/178 (8%)

Query  503  EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFK  562
            + + ++A++   TK   + L +Y ++              + LH +    +R + L++ +
Sbjct  439  KKRGEKALVTVLTKKTAEMLAEYLVEF---------NIRALYLHSELDAIKRVEVLKKLR  489

Query  563  KGDVRFLICTDVAARGIDIHGVPYVINVT-----LPDEKQNYVHRIGRVGRAERMGLAIS  617
             G++  ++  ++   G+D+  V  V  +          +   +  IGR  R    G  I 
Sbjct  490  AGEIDVVVGVNLLREGLDLPEVSLVAILDADTEGFLRSETTLIQIIGRTAR-NENGKVIM  548

Query  618  LVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEP  675
                    +   +  +  +        E  G         L+ +I         ++  
Sbjct  549  YADRITPAMQRAIDETNRRRKIQMEYNEKHGIKPKTIIKPLMEDIFAPFRDKEEEMYK  606


>sp|Q8VHK9|DHX36_MOUSE ATP-dependent DNA/RNA helicase DHX36 OS=Mus 
musculus OX=10090 GN=Dhx36 PE=1 SV=2
Length=1001

 Score = 70.9 bits (172),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 64/337 (19%), Positives = 108/337 (32%), Gaps = 57/337 (17%)

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            G   R Q  +      I+  T G +   + +    LS V  +VLDE      +     + 
Sbjct  284  GYQIRLQSRLPRKQGSILYCTTGIILQWLQSDS-RLSSVSHIVLDEIH---ERNLQSDV-  338

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKK-LSEKIM-HFPTWVDLKGEDSVPDTVHH  443
             +   I  +      L+VI+ SATL++    +      M H P +     E  + D +  
Sbjct  339  -LMTVIKDLLHFRSDLKVILMSATLNAEKFSEYFGNCPMIHIPGFTFPVVEYLLEDIIEK  397

Query  444  VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK-  502
            +    + K  R      K       V+ ++     A   E W   IK L+  Y+   +  
Sbjct  398  IRYVPDQKEHRSQ---FKRGFMQGHVNRQEKEEKEAIYKERWPAYIKELRTRYSASTVDV  454

Query  503  -----------------------EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQ  539
                                   E +    ++F     +   L    + Q      K  +
Sbjct  455  LQMMDDDKVDLNLIAALIRYIVLEEEDGAILVFLPGWDNISTLHDLLMSQ---VMFKSDK  511

Query  540  FSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVI--------NVT  591
            F  + LH       + Q  ++   G  + +I T++A   I I  V YVI        +  
Sbjct  512  FLIIPLHSLMPTVNQTQVFKKTPPGVRKIVIATNIAETSITIDDVVYVIDGGKIKETHFD  571

Query  592  LPDEKQN----YV------HRIGRVGRAERMGLAISL  618
              +        +V       R GR GR  + G    L
Sbjct  572  TQNNISTMSAEWVSKANAKQRKGRAGRV-QPGHCYHL  607


>sp|P57844|UVRB_PASMU UvrABC system protein B OS=Pasteurella multocida 
(strain Pm70) OX=272843 GN=uvrB PE=3 SV=1
Length=678

 Score = 70.5 bits (171),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 52/313 (17%), Positives = 109/313 (35%), Gaps = 45/313 (14%)

Query  417  KLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTR  476
            +L   + + P   + + E   P T++    P   + ++    +    +R           
Sbjct  372  RLPSALDNRPLRFE-EFERLAPQTIYVSATPGPYELEKSGGEIIDQVVR----------P  420

Query  477  PGANSPEMWSEAIKILKGEYAVRAIKE-HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDK  535
             G   PE+    + I   +    A +   + ++ ++   TK   ++L  Y  + G     
Sbjct  421  TGLLDPEIEIRPVAIQVDDLLSEARQRADQNERVLVTTLTKKMAEDLTDYLDEHG-----  475

Query  536  KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT----  591
                     LH D    ER + +   + G+   L+  ++   G+DI  V  V  +     
Sbjct  476  ----IRVRYLHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKE  531

Query  592  -LPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCT  650
                 +++ +  IGR  R    G AI             + +S  K    T  + +    
Sbjct  532  GFLRSERSLIQTIGRAAR-NLKGKAILYAD--------RITNSMQKAITETNRRREK--Q  580

Query  651  IWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAP  710
            + YNE + +  + + LN  + ++  DI    ++        +K A     Y     ++  
Sbjct  581  MKYNEARGI--VPQALNKKVGEL-LDIGQGANQKAKANRNAKKVAEPTALY-----VVPQ  632

Query  711  TVQELAALEKEAQ  723
            T +E     K+ +
Sbjct  633  TAKEYQQQIKKLE  645


>sp|Q587J7|TDR12_HUMAN Putative ATP-dependent RNA helicase TDRD12 
OS=Homo sapiens OX=9606 GN=TDRD12 PE=2 SV=2
Length=1177

 Score = 70.9 bits (172),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 53/321 (17%), Positives = 114/321 (36%), Gaps = 54/321 (17%)

Query  285  NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARD-QLSVLENGVDIV  343
            N P A+IV P  + A+     + ++   + +  L  +L+  G+   + + + L  G D++
Sbjct  490  NGPLAVIVCPGWKKAQFIFELLGEYS--MSSRPLHPVLLTIGLHKEEAKNTKLPRGCDVI  547

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            V TP  L  L++   L   ++  L+LDE + L     ++ +  + +              
Sbjct  548  VTTPYSLLRLLACQSLLFLRLCHLILDEVEVLF-LEANEQMFAILD--------------  592

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLW-ERLGKS  462
                                +F   ++++  +S P  +  V V  N   + L  E +   
Sbjct  593  --------------------NFKKNIEVEERESAPHQIVAVGVHWNKHIEHLIKEFMNDP  632

Query  463  HIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNL  522
            +I    +              +  E  K      A+  I   +  + +IF  +  + + +
Sbjct  633  YIVITAMEEAALYGNVQQVVHLCLECEKTSSLLQALDFIPS-QAQKTLIFTCSVAETEIV  691

Query  523  EQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK----GDVRFLICTDVAARG  578
             +           +     C+ +H +   +  +  LE++KK    G    L  TD     
Sbjct  692  CK---------VVESSSIFCLKMHKEMIFNL-QNVLEQWKKKLSSGSQIILALTDDCVPL  741

Query  579  IDIHGVPYVINVTLPDEKQNY  599
            + I     VI+ + P   + +
Sbjct  742  LAITDATCVIHFSFPASPKVF  762


 Score = 39.3 bits (90),  Expect = 0.17, Method: Composition-based stats.
 Identities = 11/62 (18%), Positives = 29/62 (47%), Gaps = 1/62 (2%)

Query  3    AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ  62
                  +  ++ +A++   +  P+  ++ S P I  G DV++ +   S     + +PV+ 
Sbjct  417  TIDSSPLSADLKKALQRNKFPGPSHTESYSWPPIARGCDVVVISHCES-NPLLYLLPVLT  475

Query  63   IV  64
            ++
Sbjct  476  VL  477


>sp|Q87MX6|UVRB_VIBPA UvrABC system protein B OS=Vibrio parahaemolyticus 
serotype O3:K6 (strain RIMD 2210633) OX=223926 GN=uvrB 
PE=3 SV=1
Length=676

 Score = 70.5 bits (171),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 49/291 (17%), Positives = 99/291 (34%), Gaps = 35/291 (12%)

Query  417  KLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTR  476
            +L   + + P   + + E   P T+     P N + ++    +       D V       
Sbjct  368  RLPSALDNRPLKFE-EFESLAPQTIFVSATPGNYELEKSAGEIA------DQVVRPTGLL  420

Query  477  PGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKK  536
                     +  +  L  E  +RA KE   ++ ++   TK   ++L +Y  +        
Sbjct  421  DPILEVRPVATQVDDLLSEIRIRAAKE---ERVLVTTLTKRMAEDLTEYLHE--------  469

Query  537  GHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT-----  591
             H      LH D    ER + +   + G+   L+  ++   G+D+  V  V  +      
Sbjct  470  -HDVRVRYLHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG  528

Query  592  LPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTI  651
                +++ +  IGR  R    G AI            ++  S  K    T  + +     
Sbjct  529  FLRSERSLIQTIGRAAR-NIEGKAILYAD--------NITKSMKKAMDETNRRREK-QQA  578

Query  652  WYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYK  702
            +  +M +  +  +     I ++  DI     + + K     K A    +Y+
Sbjct  579  YNEKMGITPQALKRNIKDIMEL-GDITKSKRQRNTKQVPLSKVAEPSQTYE  628


>sp|Q4UMJ0|MFD_RICFE Transcription-repair-coupling factor OS=Rickettsia 
felis (strain ATCC VR-1525 / URRWXCal2) OX=315456 
GN=mfd PE=3 SV=1
Length=1142

 Score = 70.9 bits (172),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 60/347 (17%), Positives = 113/347 (33%), Gaps = 72/347 (21%)

Query  287  PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG-VDIVVG  345
            P+  +V P+  L  Q  +   +  K       +   +I    A+   S LE+G ++I++G
Sbjct  631  PQVAVVVPTTILCSQHFSRFIERFKGFGLNIKQLSSVISAKEAKIIRSELESGKINIIIG  690

Query  346  TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV  405
            T       +         ++ L++DE +     G  +F+  + +             V+ 
Sbjct  691  T-----HSLLHKNTKFFNLKLLIIDE-EQHFGVGQKEFLKSLKS----------SSHVLA  734

Query  406  CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR  465
             SAT                           +P T+   +  +   +      L +  +R
Sbjct  735  MSAT--------------------------PIPRTLQMSMTGLKELSIIATPPLNRLEVR  768

Query  466  TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY  525
            T  +         A   E +                   +  ++        D +++E+ 
Sbjct  769  TMVMPFDPVIIRDALLREHF-------------------RGGRSFYVVPRIKDIEDIEKQ  809

Query  526  FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP  585
              Q       K         HG   P +  + +  F  G    L+ T +   GIDI    
Sbjct  810  LKQIVPELSYKIA-------HGKMTPSKIDEVMSEFYAGKFDILVSTTIIESGIDIAEAN  862

Query  586  -YVIN-VTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV  630
              VI+   +    Q Y  R GR+GR +  G A   VA+ K+   + +
Sbjct  863  TMVIHKADMLGLSQLYQLR-GRIGRGKVRGYAYLTVASHKKMTSHSL  908


>sp|A2PYH4|HFM1_HUMAN Probable ATP-dependent DNA helicase HFM1 
OS=Homo sapiens OX=9606 GN=HFM1 PE=1 SV=2
Length=1435

 Score = 70.9 bits (172),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 66/408 (16%), Positives = 135/408 (33%), Gaps = 49/408 (12%)

Query  292  VEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLD  351
            + P + L  Q  ++ K+  K+     L    + G     D   +      I++ TP + D
Sbjct  336  MAPIKALCSQRFDDWKE--KF-GPIGLNCKELTGDTVMDDLFEI--QHAHIIMTTPEKWD  390

Query  352  DLVSTGKLN--LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL--------  401
             +    + N  +  VR  ++DE   +  +     +  + +++  V S  + L        
Sbjct  391  SMTRKWRDNSLVQLVRLFLIDEVHIVKDENRGPTLEVVVSRMKTVQSVSQTLKNTSTAIP  450

Query  402  -QVIVCSATLHS-FDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL  459
             + +  SAT+ +  D+ +        P       E   P  +  VV+     ++   +  
Sbjct  451  MRFVAVSATIPNAEDIAEWLSDG-ERPAVCLKMDESHRPVKLQKVVLGFPCSSN---QTE  506

Query  460  GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDC  519
             K  +  +   A          P +   A +    + A   +K+ K      F  T    
Sbjct  507  FKFDLTLNYKIASVIQMYSDQKPTLVFCATRKGVQQAASVLVKDAK------FIMTVEQK  560

Query  520  DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI  579
              L++Y         +   +      H   +  +RK     F  GD+  L  T   A G+
Sbjct  561  QRLQKYAYSVRDSKLRDILKDGAAYHHAGMELSDRKVVEGAFTVGDLPVLFTTSTLAMGV  620

Query  580  DIHGVPYVINVTLPDEKQNY-------------VHRIGRVGR--AERMGLAISL--VATE  622
            ++     VI         +Y             +  IGR GR   +    A+ +  ++T 
Sbjct  621  NLPAHLVVI-----KSTMHYAGGLFEEYSETDILQMIGRAGRPQFDTTATAVIMTRLSTR  675

Query  623  KEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTI  670
             + +    C    +   +  L E     I  + +  ++   E +  T+
Sbjct  676  DKYIQMLACRDTVESSLHRHLIEHLNAEIVLHTITDVNIAVEWIRSTL  723


 Score = 35.5 bits (80),  Expect = 2.3, Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (3%)

Query  28   IQAESIPLIL-GGGDVLMAAETGSGKTGAFSIPVIQIVYE  66
            IQ+++   +L    + ++ A TGSGKT  F + + +++ E
Sbjct  284  IQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLME  323


>sp|F4JFJ3|Y3206_ARATH ATP-dependent DNA helicase At3g02060, chloroplastic 
OS=Arabidopsis thaliana OX=3702 GN=At3g02060 PE=2 
SV=1
Length=823

 Score = 70.5 bits (171),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 56/344 (16%), Positives = 111/344 (32%), Gaps = 83/344 (24%)

Query  288  KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN----GVDIV  343
            +A+++ P+  LA+Q  + I +  ++   P ++  L+       ++   LE      ++I+
Sbjct  321  QAMVLAPTIVLAKQHYDVISE--RFSLYPHIKVGLLSRFQTKAEKEEYLEMIKTGHLNII  378

Query  344  VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV  403
            VGT       +   ++  S +  LV+DE      Q +         Q  ++ S    + V
Sbjct  379  VGT-----HSLLGSRVVYSNLGLLVVDE-----EQRFG------VKQKEKIASFKTSVDV  422

Query  404  IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            +  SAT        L+       + +     + +P   H          + +   L    
Sbjct  423  LTLSAT-PIPRTLYLALTGFRDASLISTPPPERIPIKTHLSSFRKEKVIEAIKNELD---  478

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE  523
                                                     +  Q           + + 
Sbjct  479  -----------------------------------------RGGQVFYVLPRIKGLEEVM  497

Query  524  QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG  583
             +  +                 HG +   + ++ +ERF +G ++ LICT++   G+DI  
Sbjct  498  DFLEEAFP-------DIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQN  550

Query  584  VPYVI-----NVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
               +I        L    Q Y  R GRVGRA++   A      +
Sbjct  551  ANTIIIQDVQQFGL---AQLYQLR-GRVGRADKEAHAYLFYPDK  590


>sp|Q1RI82|MFD_RICBR Transcription-repair-coupling factor OS=Rickettsia 
bellii (strain RML369-C) OX=336407 GN=mfd PE=3 SV=1
Length=1120

 Score = 70.9 bits (172),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 68/423 (16%), Positives = 137/423 (32%), Gaps = 80/423 (19%)

Query  214  LAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSG  273
            + F++  + K  A FP    ++     N   E+         +       G    +    
Sbjct  559  IEFDLEEYDKFCAKFPFTETEDQLNAINDIREDLSNGMLMDRLICGDVGFGKTEVAMR--  616

Query  274  NAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARD--  331
             A +       N+P+  +V P+  L  Q   +  +F +   +  L    +   V++++  
Sbjct  617  AAFMVAKSLNENSPQVAVVVPTTILCSQ---HFARFTERFKDSDLNIKQLSSVVSSKEAK  673

Query  332  -QLSVLENG-VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHN  389
               S LE+G ++I++GT       +         ++ L++DE +     G  +F+  + +
Sbjct  674  IVRSELESGKINIIIGT-----HSLLHKVTKFCNLKLLIIDE-EQHFGVGQKEFLKSLKS  727

Query  390  QIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN  449
                         V+  SAT                           +P T+   +  + 
Sbjct  728  ----------STHVLAMSAT--------------------------PIPRTLQMSMTGLK  751

Query  450  PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA  509
              +      L +  +RT  +         A   E +                   +  ++
Sbjct  752  ELSIIATPPLNRLEVRTSVMPFDPVIIRDALLHEHF-------------------RGGKS  792

Query  510  IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL  569
                    D +++E+   Q       K         HG   P++  + +  F  G    L
Sbjct  793  FFVVPRINDIEDIEKQLKQIVPELSYKVA-------HGKMSPNKIDEIMSEFYAGKFDIL  845

Query  570  ICTDVAARGIDIHGVPYVINV--TLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVW  627
            I T +   GIDI     +I     +    Q Y  R GR+GR +  G A   + + K+   
Sbjct  846  ISTTIIESGIDIQDANTMIIHKADMLGLSQLYQLR-GRIGRGKMRGYAYLTLPSHKKMTP  904

Query  628  YHV  630
            + +
Sbjct  905  HSL  907


>sp|Q05B79|DHX36_BOVIN ATP-dependent DNA/RNA helicase DHX36 OS=Bos 
taurus OX=9913 GN=DHX36 PE=1 SV=1
Length=1010

 Score = 70.5 bits (171),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 58/345 (17%), Positives = 109/345 (32%), Gaps = 51/345 (15%)

Query  326  GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN  385
            G   R Q  +      I+  T G +   + +   +LS V  +VLDE      +     + 
Sbjct  293  GYQIRLQSRLPRKQGSILYCTTGIILQWLQSDP-HLSSVSHIVLDEIH---ERNLQSDV-  347

Query  386  RMHNQIPQVTSDGKRLQVIVCSATLHSFD--------------------VKKLSEKIMHF  425
             +   +  + S    L+V++ SATL++                      V+ L E I+  
Sbjct  348  -LMTVVKDLLSYRPDLKVVLMSATLNAEKFSEYFGNCPMIHIPGFTFPVVEYLLEDIIEK  406

Query  426  PTWV--DLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPE  483
              +V    +             V    K ++      +      ++  + +         
Sbjct  407  IRYVPEQKEHRSQFKKGFMQGHVNRQEKEEKEAIYKERWPGYLRELRQRYSASTVDVVEM  466

Query  484  MWSEAIKI-LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSC  542
            M  E + + L        + E +    ++F     +   L    + Q      K  +F  
Sbjct  467  MDDEKVDLNLIAALIRYIVLEEEDGAILVFLPGWDNISTLHDLLMSQ---VMFKSDKFII  523

Query  543  VCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVI--------NVTLPD  594
            + LH       + Q  +R   G  + +I T++A   I I  V YVI        +    +
Sbjct  524  IPLHSLMPTVNQTQVFKRTPPGVRKIVIATNIAETSITIDDVVYVIDGGKIKETHFDTQN  583

Query  595  EKQN----YV------HRIGRVGRAERMGLAISLVATEKEKVWYH  629
                    +V       R GR GR  + G    L  + +  +   
Sbjct  584  NISTMSAEWVSKANAKQRKGRAGRV-QPGHCYHLYNSLRASLLDD  627


>sp|Q9HJX7|HELS_THEAC ATP-dependent DNA helicase Hel308 OS=Thermoplasma 
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 
/ NBRC 15155 / AMRC-C165) OX=273075 GN=hel308 PE=3 SV=1
Length=674

 Score = 70.5 bits (171),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 61/393 (16%), Positives = 128/393 (33%), Gaps = 58/393 (15%)

Query  251  PKDGFVALSKAPDGYIVKSQHSGNAQVTQT---KFLPNAPKALIVEPSRELAEQTLNNIK  307
             +     + K  +  +     +G   +  +   +      K++ + P R LA +  + + 
Sbjct  27   QRMAIEQIRKGRNVVVSVPTAAGKTLIAYSAIYETFQRNLKSIYIVPLRSLAMEKFSELS  86

Query  308  QFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFL  367
            + +       L+  + IG     D         D V+ T  + D L+      L+ V  L
Sbjct  87   RLRDL----GLKVKMSIGDY---DDSPDFIKRYDAVILTSEKADSLLHHDPYILNDVGLL  139

Query  368  VLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPT  427
            VLDE   +  +     +  + +           ++++  SAT+ +          M   +
Sbjct  140  VLDEIHTIGDESRGPTLETVASI---ARYVNPDVRILALSATVSNA---------MELAS  187

Query  428  WVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSE  487
            W+D          +     PV  KT  L+           D   +          E   +
Sbjct  188  WLD-------ASLIKSDFRPVPLKTGILY-----RDQLYLDGKRRSGVSINQIIRETVED  235

Query  488  AIKILKGEYAVRAIKEHKMDQAIIF---CRTKIDCDN--LEQYFIQQGGGPDKKGHQFSC  542
              ++L    + +  ++   D A IF      KI  D   +    + +        H    
Sbjct  236  NGQVLMFVSSRKKAEDTARDLAQIFGSDANIKISSDETNVYDDMLNEILPRGVAFH----  291

Query  543  VCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD---EKQNY  599
               H      +R      F+   ++ ++ T   A G+++     VI   +     +  +Y
Sbjct  292  ---HAGLSNDQRAFIEREFRARRIKVIVATPTLAAGVNLPA-RLVIVRDITRWGSDGISY  347

Query  600  V------HRIGRVGRAE--RMGLAISLVATEKE  624
            +        IGR GR    + G+ +  V+++  
Sbjct  348  LTNMEIKQMIGRAGRPGYDQYGIGLIYVSSQSS  380


>sp|Q9CZU3|MTREX_MOUSE Exosome RNA helicase MTR4 OS=Mus musculus 
OX=10090 GN=Mtrex PE=1 SV=1
Length=1040

 Score = 70.5 bits (171),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 71/427 (17%), Positives = 129/427 (30%), Gaps = 82/427 (19%)

Query  288  KALIVEPSRELAEQTLNNI-KQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT  346
            + +   P + L+ Q    + ++F+           L+ G V      S L    +I    
Sbjct  182  RVIFTSPIKALSNQKYREMYEEFQD--------VGLMTGDVTINPTASCLVMTTEI----  229

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
               L  ++  G   + +V +++ DE   +               +P        +  +  
Sbjct  230  ---LRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPD------NVHYVFL  280

Query  407  SATLHSFDVKKLSEKIMH---FPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH  463
            SAT+ +   ++ +E I H    P  V        P  + H + P       L        
Sbjct  281  SATIPNA--RQFAEWICHLHKQPCHVIYTDYRPTP--LQHYIFPAGGDGLHLVVDENGDF  336

Query  464  IRTDDVHAKDNTRPGANSPEMWSEAIK-----ILKGEYAVRAIKEHKMDQAIIFCRTKID  518
               +   A    R   +  +   +  K            V+ I E      IIF  +K D
Sbjct  337  REDNFNTAMQVLRDAGDLAKGDQKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKD  396

Query  519  CDNLEQYFIQQGGGPDKKGHQFS----------------------CVCL--------HGD  548
            C+       +     D++                            + L        HG 
Sbjct  397  CEAYALQMTKLDFNTDEEKKMVEEVFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGG  456

Query  549  RKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVIN-----VTLPD----EKQNY  599
              P  ++     F +G ++ L  T+  A GI++     V+          D        Y
Sbjct  457  LLPILKETIEILFSEGLIKALFATETFAMGINMPA-RTVLFTNARKYDGKDFRWISSGEY  515

Query  600  VHRIGRVGRAER--MGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQ  657
            +   GR GR      G+ I +V    EK+   +     KG  +     +    + YN + 
Sbjct  516  IQMSGRAGRRGMDDRGIVILMV---DEKMSPTIGKQLLKGSADPL---NSAFHLTYNMVL  569

Query  658  LLSEIEE  664
             L  +EE
Sbjct  570  NLLRVEE  576


>sp|Q5N3H1|UVRB_SYNP6 UvrABC system protein B OS=Synechococcus 
sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 
GN=uvrB PE=3 SV=1
Length=666

 Score = 70.2 bits (170),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 51/316 (16%), Positives = 99/316 (31%), Gaps = 61/316 (19%)

Query  375  LLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE  434
            L+  G+       +  +       K  Q I  SAT   +++++  E+I+           
Sbjct  359  LVDHGFRLPSAADNRPLKSEEFWEKVRQCIFVSATPGDWEIERSEEQIVEQVIR------  412

Query  435  DSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG  494
               P  V    V V P   ++ + L +   R                             
Sbjct  413  ---PTGVVDPEVFVRPTEGQVDDLLAEIQQRVR---------------------------  442

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
                      + ++A+I   TK   ++L  Y   +G              LH +    ER
Sbjct  443  ----------RQERALITTLTKRMAEDLTDYLSDRG---------VKVRYLHSEINSIER  483

Query  555  KQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT-----LPDEKQNYVHRIGRVGRA  609
             + L+  + GD   LI  ++   G+D+  V  V  +          +++ +  IGR  R 
Sbjct  484  IEILQDLRNGDFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRTERSLIQTIGRAARH  543

Query  610  ERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCT  669
               G AI       E +   +  +  +        +    T      +  + I   L  +
Sbjct  544  IN-GQAILYADRMTESMEKAISETERRRRIQLDYNQRHNITPQPIIKRSSNAILSFLEVS  602

Query  670  ISQVEPDIKVPVDEFD  685
                + +++V V + D
Sbjct  603  RRLNKQELEVAVSQAD  618


>sp|Q31QS4|UVRB_SYNE7 UvrABC system protein B OS=Synechococcus 
elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805) OX=1140 
GN=uvrB PE=3 SV=1
Length=666

 Score = 70.2 bits (170),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 51/316 (16%), Positives = 99/316 (31%), Gaps = 61/316 (19%)

Query  375  LLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE  434
            L+  G+       +  +       K  Q I  SAT   +++++  E+I+           
Sbjct  359  LVDHGFRLPSAADNRPLKSEEFWEKVRQCIFVSATPGDWEIERSEEQIVEQVIR------  412

Query  435  DSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG  494
               P  V    V V P   ++ + L +   R                             
Sbjct  413  ---PTGVVDPEVFVRPTEGQVDDLLAEIQQRVR---------------------------  442

Query  495  EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHER  554
                      + ++A+I   TK   ++L  Y   +G              LH +    ER
Sbjct  443  ----------RQERALITTLTKRMAEDLTDYLSDRG---------VKVRYLHSEINSIER  483

Query  555  KQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT-----LPDEKQNYVHRIGRVGRA  609
             + L+  + GD   LI  ++   G+D+  V  V  +          +++ +  IGR  R 
Sbjct  484  IEILQDLRNGDFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRTERSLIQTIGRAARH  543

Query  610  ERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCT  669
               G AI       E +   +  +  +        +    T      +  + I   L  +
Sbjct  544  IN-GQAILYADRMTESMEKAISETERRRRIQLDYNQRHNITPQPIIKRSSNAILSFLEVS  602

Query  670  ISQVEPDIKVPVDEFD  685
                + +++V V + D
Sbjct  603  RRLNKQELEVAVSQAD  618


>sp|Q5D892|MER3_ARATH DExH-box ATP-dependent RNA helicase DExH17 
OS=Arabidopsis thaliana OX=3702 GN=MER3 PE=2 SV=1
Length=1133

 Score = 70.5 bits (171),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 70/443 (16%), Positives = 153/443 (35%), Gaps = 64/443 (14%)

Query  292  VEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLD  351
            + PS+ L       ++ + +  ++  +  L + G        ++     DI++ TP + D
Sbjct  87   ISPSKAL---VQEKLRDWNQKFNSWGISCLELTGDNETYSTKNI--QDADIILTTPEKFD  141

Query  352  DLVSTGKLN-----LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL-----  401
             +      +      S +  +++DE   LL+      +  + +++  ++S+ +       
Sbjct  142  AVSRYRVTSGGLGFFSDIALVLIDEVH-LLNDPRGAALEAIVSRLKILSSNHELRSSTLA  200

Query  402  --QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-HVVVPVNPKTDRLWER  458
              +++  SAT+   +++ L+E +      +   GE+  P  +   V      K D L+E+
Sbjct  201  SVRLLAVSATIP--NIEDLAEWLKVPTAGIKRFGEEMRPVKLTTKVFGYAAAKNDFLFEK  258

Query  459  LGKSHI--RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTK  516
              +++I           +     ++ +   EA + L                   F +++
Sbjct  259  RLQNYIYDILMQYSKGKSALVFCSTRKGAQEAAQKLAQTAMTYGYSNP-------FIKSR  311

Query  517  IDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAA  576
               + L +          +          +G     +R      F  GD++ +  T+  A
Sbjct  312  EQLERLREASPMCSDKQMQSYILQGVGYHNGGLCQKDRSLVEGLFLNGDIQVICTTNTLA  371

Query  577  RGIDIHGVPYVI-----------NVTLPDEKQNYVHRIGRVGR--AERMGLAISLVATEK  623
             GI++     VI           +  +  ++   +   GR GR   +  G+ I +     
Sbjct  372  HGINLPAHTVVIKSTQHFNKEKGHY-MEYDRSTLLQMSGRAGRPPFDDTGMVIIM----T  426

Query  624  EKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVE-PDIKVPVD  682
             +   H+  +   GC                E QLL  + EHL   I Q+   DI   ++
Sbjct  427  RRETVHLYENLLNGCEVV-------------ESQLLPCLIEHLTAEIVQLTISDITRAIE  473

Query  683  EFDGKVTYGQ--KRAAGGGSYKG  703
                   Y +  K        KG
Sbjct  474  WMKCSYLYVRMKKNPENYAIKKG  496


 Score = 37.4 bits (85),  Expect = 0.58, Method: Composition-based stats.
 Identities = 20/84 (24%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query  29   QAESIPLILGGG-DVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASV  87
            Q+E  PL      +++++A TGSGKT  F + ++++  +++  +      K  +KT    
Sbjct  29   QSECFPLCFHSDINMIISAPTGSGKTVLFELCILRLFSKSISKEGSFLHAKGALKTVYIS  88

Query  88   LNKWQMNPYDRGSAFAIGSDGLCC  111
             +K  +    R       S G+ C
Sbjct  89   PSKALVQEKLRDWNQKFNSWGISC  112


>sp|Q465R3|HELS_METBF ATP-dependent DNA helicase Hel308 OS=Methanosarcina 
barkeri (strain Fusaro / DSM 804) OX=269797 GN=hel308 
PE=3 SV=1
Length=729

 Score = 70.2 bits (170),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 67/399 (17%), Positives = 131/399 (33%), Gaps = 39/399 (10%)

Query  249  FPPKDGFV--ALSKAPDGYIVKSQHSGN---AQVTQTKFLPNAPKALIVEPSRELAEQTL  303
            +PP+   V   L +  +        SG    A++   K +    KAL + P R LA +  
Sbjct  25   YPPQAEAVEKGLLEGRNLLAAIPTASGKTLLAELAMLKSILAGGKALYIVPLRALASEKF  84

Query  304  NNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQ  363
               ++F +      +R  +  G    RD+   +    DI+V T  + D L+    + + +
Sbjct  85   RRFREFSEL----GIRVGISTGDYDLRDEGLGVN---DIIVATSEKTDSLLRNETVWMQE  137

Query  364  VRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIM  423
            +  +V DE   + S      +     ++ ++       Q++  SAT+ + D  +L+   +
Sbjct  138  ISVVVADEVHLIDSPDRGPTLEVTLAKLRKMNPS---CQILALSATVGNAD--ELA-VWL  191

Query  424  HFPTWVDLKGEDSVPDTVHH---VVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN  480
                 V       + + V            KT     +    ++  D +          +
Sbjct  192  EAELVVSEWRPTELLEGVFFNGTFYCKDREKTVEQSTKDEAVNLALDTLKKDGQCLVFES  251

Query  481  SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF  540
            S +      K            E +   A I        D + +              + 
Sbjct  252  SRKNCMAFAKKAASTVKKTLSAEDRNALAGI-------ADEILENSETDTSTNLAVCIRS  304

Query  541  SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVI-NVT--------  591
                 H       R+   + F+ G ++ +  T   A G+++     +I N          
Sbjct  305  GTAFHHAGLTTPLRELVEDGFRAGRIKLISSTPTLAAGLNLPARRVIIRNYRRYSSEDGM  364

Query  592  LPDEKQNYVHRIGRVG--RAERMGLAISLVATEKEKVWY  628
             P     Y    GR G  R +  G A+ +  + KE V+ 
Sbjct  365  QPIPVLEYKQMAGRAGRPRLDPYGEAVLVAKSYKEFVFL  403


 Score = 37.4 bits (85),  Expect = 0.60, Method: Composition-based stats.
 Identities = 15/66 (23%), Positives = 29/66 (44%), Gaps = 1/66 (2%)

Query  5   SEMGVMPEIAQAVEEMDWLLPTDIQAESIPL-ILGGGDVLMAAETGSGKTGAFSIPVIQI  63
             + +  E+ Q       +     QAE++   +L G ++L A  T SGKT    + +++ 
Sbjct  4   ESLDLPDEVKQFYLNSGIMELYPPQAEAVEKGLLEGRNLLAAIPTASGKTLLAELAMLKS  63

Query  64  VYETLK  69
           +    K
Sbjct  64  ILAGGK  69


>sp|Q054D2|UVRB_LEPBL UvrABC system protein B OS=Leptospira borgpetersenii 
serovar Hardjo-bovis (strain L550) OX=355276 GN=uvrB 
PE=3 SV=1
Length=666

 Score = 70.2 bits (170),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 58/346 (17%), Positives = 108/346 (31%), Gaps = 53/346 (15%)

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            P  L D      L       L++DE+   +       I  M         D  R Q +V 
Sbjct  321  PACLIDYFQGEFL-------LIVDESHVTI-----PQIGGMF------AGDKARKQTLV-  361

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
                       L  + ++F  +     E   P T++    P + + ++  + + +    T
Sbjct  362  --DFGFRLPSALDNRPLNFEEF-----ETLTPKTLYVSATPADYEMEKSSKVVEQIIRPT  414

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
              +      R   N  E     I+                ++ +I   TK   ++L  Y+
Sbjct  415  GLLDPIVEVRSTKNQIEDLLVEIRKRIDV----------GERILITTLTKKMSEDLTDYY  464

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
             + G              LH + +  +R   +   +KG    LI  ++   G+DI  V  
Sbjct  465  KEIG---------LQVAYLHSEVETLDRVAIIRDLRKGIYDVLIGINLLREGLDIPEVSL  515

Query  587  VINVT-----LPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV--CSSRGKGCY  639
            V  +           ++ +  +GR  R    G AI       + +   +     R K   
Sbjct  516  VAILDADKEGFLRNYKSLIQTVGRAAR-NVNGTAILYADKITDSMAKAIDETKRRRKIQE  574

Query  640  NTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFD  685
            +  LK          E+  + E EE    +   V  D++   +   
Sbjct  575  DHNLKFGITPLTIRKEVNDIIEREEKKRTSEDLVLEDVEKKFNSKK  620


>sp|Q04QJ9|UVRB_LEPBJ UvrABC system protein B OS=Leptospira borgpetersenii 
serovar Hardjo-bovis (strain JB197) OX=355277 GN=uvrB 
PE=3 SV=1
Length=666

 Score = 70.2 bits (170),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 58/346 (17%), Positives = 108/346 (31%), Gaps = 53/346 (15%)

Query  347  PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC  406
            P  L D      L       L++DE+   +       I  M         D  R Q +V 
Sbjct  321  PACLIDYFQGEFL-------LIVDESHVTI-----PQIGGMF------AGDKARKQTLV-  361

Query  407  SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT  466
                       L  + ++F  +     E   P T++    P + + ++  + + +    T
Sbjct  362  --DFGFRLPSALDNRPLNFEEF-----ETLTPKTLYVSATPADYEMEKSSKVVEQIIRPT  414

Query  467  DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF  526
              +      R   N  E     I+                ++ +I   TK   ++L  Y+
Sbjct  415  GLLDPIVEVRSTKNQIEDLLVEIRKRIDV----------GERILITTLTKKMSEDLTDYY  464

Query  527  IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY  586
             + G              LH + +  +R   +   +KG    LI  ++   G+DI  V  
Sbjct  465  KEIG---------LQVAYLHSEVETLDRVAIIRDLRKGIYDVLIGINLLREGLDIPEVSL  515

Query  587  VINVT-----LPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV--CSSRGKGCY  639
            V  +           ++ +  +GR  R    G AI       + +   +     R K   
Sbjct  516  VAILDADKEGFLRNYKSLIQTVGRAAR-NVNGTAILYADKITDSMAKAIDETKRRRKIQE  574

Query  640  NTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFD  685
            +  LK          E+  + E EE    +   V  D++   +   
Sbjct  575  DHNLKFGITPLTIRKEVNDIIEREEKKRTSEDLVLEDVEKKFNSKK  620


>sp|P9WFC7|UVRB_MYCTU UvrABC system protein B OS=Mycobacterium 
tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=uvrB PE=1 
SV=2
Length=719

 Score = 70.2 bits (170),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 34/217 (16%), Positives = 70/217 (32%), Gaps = 25/217 (12%)

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
            + ++   TK   ++L  Y ++ G              LH +     R + L + + GD  
Sbjct  470  RVLVTTLTKKMAEDLTDYLLEMG---------IRVRYLHSEVDTLRRVELLRQLRLGDYD  520

Query  568  FLICTDVAARGIDIHGVPYVINVT-----LPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             L+  ++   G+D+  V  V  +           ++ +  IGR  R    G         
Sbjct  521  VLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAAR-NVSGEVHMYADKI  579

Query  623  KEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVD  682
             + +   +  +  +        E  G         L  +I + L+    + +    V V 
Sbjct  580  TDSMREAIDETERRRAKQIAYNEANGIDPQP----LRKKIADILDQVYREADDTAVVEVG  635

Query  683  EFDGKVTYGQK------RAAGGGSYKGHVDILAPTVQ  713
                  + G++      RA   G ++G      P  +
Sbjct  636  GSGRNASRGRRAQGEPGRAVSAGVFEGRDTSAMPRAE  672


>sp|P9WFC6|UVRB_MYCTO UvrABC system protein B OS=Mycobacterium 
tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=uvrB PE=3 
SV=2
Length=719

 Score = 70.2 bits (170),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 34/217 (16%), Positives = 70/217 (32%), Gaps = 25/217 (12%)

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
            + ++   TK   ++L  Y ++ G              LH +     R + L + + GD  
Sbjct  470  RVLVTTLTKKMAEDLTDYLLEMG---------IRVRYLHSEVDTLRRVELLRQLRLGDYD  520

Query  568  FLICTDVAARGIDIHGVPYVINVT-----LPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             L+  ++   G+D+  V  V  +           ++ +  IGR  R    G         
Sbjct  521  VLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAAR-NVSGEVHMYADKI  579

Query  623  KEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVD  682
             + +   +  +  +        E  G         L  +I + L+    + +    V V 
Sbjct  580  TDSMREAIDETERRRAKQIAYNEANGIDPQP----LRKKIADILDQVYREADDTAVVEVG  635

Query  683  EFDGKVTYGQK------RAAGGGSYKGHVDILAPTVQ  713
                  + G++      RA   G ++G      P  +
Sbjct  636  GSGRNASRGRRAQGEPGRAVSAGVFEGRDTSAMPRAE  672


>sp|P67423|UVRB_MYCBO UvrABC system protein B OS=Mycobacterium 
bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=uvrB PE=3 
SV=2
Length=719

 Score = 70.2 bits (170),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 34/217 (16%), Positives = 70/217 (32%), Gaps = 25/217 (12%)

Query  508  QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR  567
            + ++   TK   ++L  Y ++ G              LH +     R + L + + GD  
Sbjct  470  RVLVTTLTKKMAEDLTDYLLEMG---------IRVRYLHSEVDTLRRVELLRQLRLGDYD  520

Query  568  FLICTDVAARGIDIHGVPYVINVT-----LPDEKQNYVHRIGRVGRAERMGLAISLVATE  622
             L+  ++   G+D+  V  V  +           ++ +  IGR  R    G         
Sbjct  521  VLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAAR-NVSGEVHMYADKI  579

Query  623  KEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVD  682
             + +   +  +  +        E  G         L  +I + L+    + +    V V 
Sbjct  580  TDSMREAIDETERRRAKQIAYNEANGIDPQP----LRKKIADILDQVYREADDTAVVEVG  635

Query  683  EFDGKVTYGQK------RAAGGGSYKGHVDILAPTVQ  713
                  + G++      RA   G ++G      P  +
Sbjct  636  GSGRNASRGRRAQGEPGRAVSAGVFEGRDTSAMPRAE  672


>sp|Q8PJB1|UVRB_XANAC UvrABC system protein B OS=Xanthomonas axonopodis 
pv. citri (strain 306) OX=190486 GN=uvrB PE=3 SV=1
Length=673

 Score = 69.8 bits (169),  Expect = 5e-11, Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 71/218 (33%), Gaps = 36/218 (17%)

Query  507  DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDV  566
            D+ ++   TK   +NL +Y  + G              LH D    ER + +   + G  
Sbjct  447  DRVLVTTLTKRMAENLTEYLGEHG---------IRVRYLHSDIDTVERVEIIRDLRLGKF  497

Query  567  RFLICTDVAARGIDIHGVPYVINVT-----LPDEKQNYVHRIGRVGRAERMGLAISLVAT  621
              L+  ++   G+D+  V  V  +            + +  IGR  R  R G AI     
Sbjct  498  DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAARNLR-GKAI-----  551

Query  622  EKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPV  681
                             Y  ++       I   + +   ++E +L   I+    +  +  
Sbjct  552  ----------------LYADKMTRSMQAAIDETDRRREKQVEYNLEHGITPKSVERPIAD  595

Query  682  DEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALE  719
                 +    +K++  G S   HV    P  + +   E
Sbjct  596  IMEGARDDAAEKKSGKGRSKSRHVAEETPDYRAMKPAE  633


>sp|A2RUV5|HFM1_XENTR Probable ATP-dependent DNA helicase HFM1 
OS=Xenopus tropicalis OX=8364 GN=hfm1 PE=2 SV=1
Length=1336

 Score = 70.2 bits (170),  Expect = 5e-11, Method: Composition-based stats.
 Identities = 65/406 (16%), Positives = 134/406 (33%), Gaps = 47/406 (12%)

Query  253  DGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKY  312
              FV  +    G  V  + +    + Q        K + + P + L  Q  ++ K   K+
Sbjct  166  RNFVLCAPTGSGKTVIFELAIIRLLMQVPMPWTNVKIVYMAPIKALCGQRYDDWK--AKF  223

Query  313  IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNL--SQVRFLVLD  370
                 L    + G     D   +      I++ TP + D +    K N     VR  ++D
Sbjct  224  -GPVGLNCKELTGDTEMDDLFEI--QHAHIIMTTPEKWDSMTRKWKDNTLVQLVRLFLID  280

Query  371  EADGLLSQGYSDFINRM---------HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEK  421
            E   L  +     +  +          + + +       ++ +  SAT+   +V+ +++ 
Sbjct  281  EVHILKEENRGATLEVVVSRMKTIYSLSHLSEDRKAFIPMRFVAVSATIP--NVEDIADW  338

Query  422  IM--HFPTWVDLKGEDSVPDTVHHVVV--PVNPKTDRLWERLGKSHIRTDDVHAKDNTRP  477
            +   + P       E S P  +  VV+  P + K       L  ++   + +    + RP
Sbjct  339  LSDENSPGVCMKMDESSRPVKLRKVVLGFPCSTKQSEFKFDLTLNYKIANIIQTYSDGRP  398

Query  478  GANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKG  537
                  ++    K ++   ++             F  +      L++          +  
Sbjct  399  TL----VFCSTRKGVQQAASILTKDAK-------FVMSIEHKQRLQKCANSIKDSKLRDV  447

Query  538  HQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVI-----NVTL  592
             Q+     H      +RK     F  GD+  L  T   A G+++     VI     +  +
Sbjct  448  LQYGVGYHHAGVDISDRKVIENSFLIGDLPVLFTTSTLAMGVNLPAH-LVIVKSTMHY-V  505

Query  593  PDEKQNY-----VHRIGRVGR--AERMGLAISLVATEKEKVWYHVC  631
                Q Y     +  IGR GR   +    A+ +     ++ + H+ 
Sbjct  506  SGMFQEYSETDILQMIGRAGRPQFDSTATAVIMTRLSTKEKYVHML  551


 Score = 40.1 bits (92),  Expect = 0.096, Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 1/40 (3%)

Query  28   IQAESIPLIL-GGGDVLMAAETGSGKTGAFSIPVIQIVYE  66
            IQ++++  +L    + ++ A TGSGKT  F + +I+++ +
Sbjct  153  IQSKALEHLLYSDRNFVLCAPTGSGKTVIFELAIIRLLMQ  192



Lambda      K        H        a         alpha
   0.318    0.128    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0393    0.140     1.90     42.6     43.6 

Effective search space used: 82703874496


  Database: uniprot_sprot.fasta
    Posted date:  Apr 3, 2024  12:05 PM
  Number of letters in database: 206,678,396
  Number of sequences in database:  571,282



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40