PSIBLAST 2.11.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Stephen F.
Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005)
"Protein database searches using compositionally adjusted
substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: uniprot_sprot.fasta
571,282 sequences; 206,678,396 total letters
Results from round 1
Query= sp|P59635|NS7A_SARS ORF7a protein OS=Severe acute respiratory
syndrome coronavirus OX=694009 GN=7a PE=1 SV=1
Length=122
Score E
Sequences producing significant alignments: (Bits) Value
sp|P59635|NS7A_SARS ORF7a protein OS=Severe acute respiratory syn... 251 6e-87
sp|Q3I5J0|NS7A_BCRP3 Protein 7a OS=Bat coronavirus Rp3/2004 OX=34... 241 6e-83
sp|Q3LZX7|NS7A_BCHK3 Protein 7a OS=Bat coronavirus HKU3 OX=442736... 239 2e-82
sp|Q0Q470|NS7A_BC279 Protein 7a OS=Bat coronavirus 279/2005 OX=38... 236 5e-81
sp|P0DTC7|NS7A_SARS2 ORF7a protein OS=Severe acute respiratory sy... 215 9e-73
sp|P80324|OXDA_RHOTO D-amino-acid oxidase OS=Rhodotorula toruloid... 30.0 4.6
sp|Q8H3A7|XPOT_ORYSJ Exportin-T OS=Oryza sativa subsp. japonica O... 30.0 5.1
sp|Q75WS4|CRYD_XENLA Cryptochrome DASH OS=Xenopus laevis OX=8355 ... 29.6 6.3
sp|P29805|PRTT_SERMA Extracellular serine protease OS=Serratia ma... 29.6 8.2
sp|Q7RZI0|HIR1_NEUCR Protein hir-1 OS=Neurospora crassa (strain A... 29.3 9.5
>sp|P59635|NS7A_SARS ORF7a protein OS=Severe acute respiratory
syndrome coronavirus OX=694009 GN=7a PE=1 SV=1
Length=122
Score = 251 bits (640), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 122/122 (100%), Positives = 122/122 (100%), Gaps = 0/122 (0%)
Query 1 MKIILFLTLIVFTSCELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTS 60
MKIILFLTLIVFTSCELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTS
Sbjct 1 MKIILFLTLIVFTSCELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTS 60
Query 61 THFAFACADGTRHTYQLRARSVSPKLFIRQEEVQQELYSPLFLIVAALVFLILCFTIKRK 120
THFAFACADGTRHTYQLRARSVSPKLFIRQEEVQQELYSPLFLIVAALVFLILCFTIKRK
Sbjct 61 THFAFACADGTRHTYQLRARSVSPKLFIRQEEVQQELYSPLFLIVAALVFLILCFTIKRK 120
Query 121 TE 122
TE
Sbjct 121 TE 122
>sp|Q3I5J0|NS7A_BCRP3 Protein 7a OS=Bat coronavirus Rp3/2004 OX=349344
GN=7a PE=3 SV=1
Length=122
Score = 241 bits (614), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 116/122 (95%), Positives = 117/122 (96%), Gaps = 0/122 (0%)
Query 1 MKIILFLTLIVFTSCELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTS 60
MKIILFLTLI SCELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTS
Sbjct 1 MKIILFLTLIALASCELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTS 60
Query 61 THFAFACADGTRHTYQLRARSVSPKLFIRQEEVQQELYSPLFLIVAALVFLILCFTIKRK 120
THFAFACADGTRHTYQLRARSVSPKLFIRQEEV QELYSPLFLIVAALVF+ LCFTIKRK
Sbjct 61 THFAFACADGTRHTYQLRARSVSPKLFIRQEEVHQELYSPLFLIVAALVFITLCFTIKRK 120
Query 121 TE 122
TE
Sbjct 121 TE 122
>sp|Q3LZX7|NS7A_BCHK3 Protein 7a OS=Bat coronavirus HKU3 OX=442736
GN=7a PE=3 SV=1
Length=122
Score = 239 bits (611), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 115/122 (94%), Positives = 118/122 (97%), Gaps = 0/122 (0%)
Query 1 MKIILFLTLIVFTSCELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTS 60
MKIILFLTLI +CELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTC+S
Sbjct 1 MKIILFLTLIALATCELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCSS 60
Query 61 THFAFACADGTRHTYQLRARSVSPKLFIRQEEVQQELYSPLFLIVAALVFLILCFTIKRK 120
THFAFACADGTRHTYQLRARSVSPKLFIRQEEV QELYSPLFLIVAALVF+ILCFTIKRK
Sbjct 61 THFAFACADGTRHTYQLRARSVSPKLFIRQEEVYQELYSPLFLIVAALVFIILCFTIKRK 120
Query 121 TE 122
TE
Sbjct 121 TE 122
>sp|Q0Q470|NS7A_BC279 Protein 7a OS=Bat coronavirus 279/2005 OX=389167
GN=7a PE=3 SV=1
Length=122
Score = 236 bits (602), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 114/122 (93%), Positives = 115/122 (94%), Gaps = 0/122 (0%)
Query 1 MKIILFLTLIVFTSCELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTS 60
MKIILFLTLI S ELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTC S
Sbjct 1 MKIILFLTLIALASSELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCIS 60
Query 61 THFAFACADGTRHTYQLRARSVSPKLFIRQEEVQQELYSPLFLIVAALVFLILCFTIKRK 120
THFAFACADGTRHTYQLRARSVSPKLF RQEEV QELYSPLFLIVAALVF+ILCFTIKRK
Sbjct 61 THFAFACADGTRHTYQLRARSVSPKLFTRQEEVHQELYSPLFLIVAALVFIILCFTIKRK 120
Query 121 TE 122
TE
Sbjct 121 TE 122
>sp|P0DTC7|NS7A_SARS2 ORF7a protein OS=Severe acute respiratory
syndrome coronavirus 2 OX=2697049 GN=7a PE=1 SV=1
Length=121
Score = 215 bits (547), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 104/122 (85%), Positives = 110/122 (90%), Gaps = 1/122 (1%)
Query 1 MKIILFLTLIVFTSCELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTS 60
MKIILFL LI +CELYHYQECVRGTTVLLKEPC SGTYEGNSPFHPLADNKFALTC S
Sbjct 1 MKIILFLALITLATCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFS 60
Query 61 THFAFACADGTRHTYQLRARSVSPKLFIRQEEVQQELYSPLFLIVAALVFLILCFTIKRK 120
T FAFAC DG +H YQLRARSVSPKLFIRQEEV QELYSP+FLIVAA+VF+ LCFT+KRK
Sbjct 61 TQFAFACPDGVKHVYQLRARSVSPKLFIRQEEV-QELYSPIFLIVAAIVFITLCFTLKRK 119
Query 121 TE 122
TE
Sbjct 120 TE 121
>sp|P80324|OXDA_RHOTO D-amino-acid oxidase OS=Rhodotorula toruloides
OX=5286 GN=DAO1 PE=1 SV=1
Length=368
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 0/27 (0%)
Query 22 ECVRGTTVLLKEPCPSGTYEGNSPFHP 48
E +RG TVL+K PC T + + P P
Sbjct 195 EPIRGQTVLVKSPCKRCTMDSSDPASP 221
>sp|Q8H3A7|XPOT_ORYSJ Exportin-T OS=Oryza sativa subsp. japonica
OX=39947 GN=Os07g0613300 PE=2 SV=1
Length=980
Score = 30.0 bits (66), Expect = 5.1, Method: Composition-based stats.
Identities = 19/56 (34%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query 7 LTLIVFTSC---ELYHYQECVRGTTVLLKEPCPSGTYEGNSP-FHPLADNKFALTC 58
+ L++ TSC E+ H + CV+ L+K+ C S E P F KFA C
Sbjct 831 MQLLLITSCSHKEISHRKTCVQTFVNLIKDWCSSSEIEDKLPGFRVFMIEKFATGC 886
>sp|Q75WS4|CRYD_XENLA Cryptochrome DASH OS=Xenopus laevis OX=8355
GN=cry-dash PE=2 SV=1
Length=523
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 17/44 (39%), Positives = 21/44 (48%), Gaps = 2/44 (5%)
Query 33 EPCPSGTYEGNSPFHPLADNKFALTCTSTHFAFACADGTRHTYQ 76
+P PSG EG+ P H D + LT T AF C+ G Q
Sbjct 184 KPLPSGLEEGSVPSHEDFDQQDPLTDPRT--AFPCSGGESQALQ 225
>sp|P29805|PRTT_SERMA Extracellular serine protease OS=Serratia
marcescens OX=615 PE=3 SV=1
Length=1045
Score = 29.6 bits (65), Expect = 8.2, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (63%), Gaps = 0/24 (0%)
Query 77 LRARSVSPKLFIRQEEVQQELYSP 100
LR PK+FI QE++ QE Y P
Sbjct 392 LRDAINGPKMFITQEDIPQEFYVP 415
>sp|Q7RZI0|HIR1_NEUCR Protein hir-1 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
OX=367110 GN=hir-1 PE=3 SV=2
Length=1035
Score = 29.3 bits (64), Expect = 9.5, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (2%)
Query 56 LTCTSTHF-AFACADGTRHTYQLRARSVSPKLFIRQEEVQQELYSPLFLIVAAL 108
L S HF A AC DGT HT+ R + + + + V E L V A+
Sbjct 698 LVAGSKHFWAAACEDGTLHTWSPAGRRLMNAIMLESQPVILEARDSWLLCVTAV 751
Lambda K H a alpha
0.329 0.140 0.431 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 5142531834
Results from round 2
Query= sp|P59635|NS7A_SARS ORF7a protein OS=Severe acute respiratory
syndrome coronavirus OX=694009 GN=7a PE=1 SV=1
Length=122
Score E
Sequences producing significant alignments: (Bits) Value
Sequences used in model and found again:
sp|Q3I5J0|NS7A_BCRP3 Protein 7a OS=Bat coronavirus Rp3/2004 OX=34... 223 5e-76
sp|P59635|NS7A_SARS ORF7a protein OS=Severe acute respiratory syn... 221 5e-75
sp|Q3LZX7|NS7A_BCHK3 Protein 7a OS=Bat coronavirus HKU3 OX=442736... 220 1e-74
sp|Q0Q470|NS7A_BC279 Protein 7a OS=Bat coronavirus 279/2005 OX=38... 218 8e-74
sp|P0DTC7|NS7A_SARS2 ORF7a protein OS=Severe acute respiratory sy... 212 1e-71
Sequences not found previously or not previously below threshold:
sp|Q7N3E1|MDTC_PHOLL Multidrug resistance protein MdtC OS=Photorh... 31.1 2.5
sp|Q28768|LYAM1_PAPHA L-selectin OS=Papio hamadryas OX=9557 GN=SE... 30.7 3.0
sp|Q95198|LYAM1_MACMU L-selectin OS=Macaca mulatta OX=9544 GN=SEL... 30.3 3.9
sp|P80324|OXDA_RHOTO D-amino-acid oxidase OS=Rhodotorula toruloid... 29.9 4.8
sp|P29805|PRTT_SERMA Extracellular serine protease OS=Serratia ma... 29.9 6.7
sp|Q8H3A7|XPOT_ORYSJ Exportin-T OS=Oryza sativa subsp. japonica O... 29.6 8.4
sp|B6K2P1|EFTS_SCHJY Elongation factor Ts, mitochondrial OS=Schiz... 29.2 9.6
>sp|Q3I5J0|NS7A_BCRP3 Protein 7a OS=Bat coronavirus Rp3/2004 OX=349344
GN=7a PE=3 SV=1
Length=122
Score = 223 bits (569), Expect = 5e-76, Method: Composition-based stats.
Identities = 116/122 (95%), Positives = 117/122 (96%), Gaps = 0/122 (0%)
Query 1 MKIILFLTLIVFTSCELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTS 60
MKIILFLTLI SCELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTS
Sbjct 1 MKIILFLTLIALASCELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTS 60
Query 61 THFAFACADGTRHTYQLRARSVSPKLFIRQEEVQQELYSPLFLIVAALVFLILCFTIKRK 120
THFAFACADGTRHTYQLRARSVSPKLFIRQEEV QELYSPLFLIVAALVF+ LCFTIKRK
Sbjct 61 THFAFACADGTRHTYQLRARSVSPKLFIRQEEVHQELYSPLFLIVAALVFITLCFTIKRK 120
Query 121 TE 122
TE
Sbjct 121 TE 122
>sp|P59635|NS7A_SARS ORF7a protein OS=Severe acute respiratory
syndrome coronavirus OX=694009 GN=7a PE=1 SV=1
Length=122
Score = 221 bits (563), Expect = 5e-75, Method: Composition-based stats.
Identities = 122/122 (100%), Positives = 122/122 (100%), Gaps = 0/122 (0%)
Query 1 MKIILFLTLIVFTSCELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTS 60
MKIILFLTLIVFTSCELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTS
Sbjct 1 MKIILFLTLIVFTSCELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTS 60
Query 61 THFAFACADGTRHTYQLRARSVSPKLFIRQEEVQQELYSPLFLIVAALVFLILCFTIKRK 120
THFAFACADGTRHTYQLRARSVSPKLFIRQEEVQQELYSPLFLIVAALVFLILCFTIKRK
Sbjct 61 THFAFACADGTRHTYQLRARSVSPKLFIRQEEVQQELYSPLFLIVAALVFLILCFTIKRK 120
Query 121 TE 122
TE
Sbjct 121 TE 122
>sp|Q3LZX7|NS7A_BCHK3 Protein 7a OS=Bat coronavirus HKU3 OX=442736
GN=7a PE=3 SV=1
Length=122
Score = 220 bits (561), Expect = 1e-74, Method: Composition-based stats.
Identities = 115/122 (94%), Positives = 118/122 (97%), Gaps = 0/122 (0%)
Query 1 MKIILFLTLIVFTSCELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTS 60
MKIILFLTLI +CELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTC+S
Sbjct 1 MKIILFLTLIALATCELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCSS 60
Query 61 THFAFACADGTRHTYQLRARSVSPKLFIRQEEVQQELYSPLFLIVAALVFLILCFTIKRK 120
THFAFACADGTRHTYQLRARSVSPKLFIRQEEV QELYSPLFLIVAALVF+ILCFTIKRK
Sbjct 61 THFAFACADGTRHTYQLRARSVSPKLFIRQEEVYQELYSPLFLIVAALVFIILCFTIKRK 120
Query 121 TE 122
TE
Sbjct 121 TE 122
>sp|Q0Q470|NS7A_BC279 Protein 7a OS=Bat coronavirus 279/2005 OX=389167
GN=7a PE=3 SV=1
Length=122
Score = 218 bits (555), Expect = 8e-74, Method: Composition-based stats.
Identities = 114/122 (93%), Positives = 115/122 (94%), Gaps = 0/122 (0%)
Query 1 MKIILFLTLIVFTSCELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTS 60
MKIILFLTLI S ELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTC S
Sbjct 1 MKIILFLTLIALASSELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCIS 60
Query 61 THFAFACADGTRHTYQLRARSVSPKLFIRQEEVQQELYSPLFLIVAALVFLILCFTIKRK 120
THFAFACADGTRHTYQLRARSVSPKLF RQEEV QELYSPLFLIVAALVF+ILCFTIKRK
Sbjct 61 THFAFACADGTRHTYQLRARSVSPKLFTRQEEVHQELYSPLFLIVAALVFIILCFTIKRK 120
Query 121 TE 122
TE
Sbjct 121 TE 122
>sp|P0DTC7|NS7A_SARS2 ORF7a protein OS=Severe acute respiratory
syndrome coronavirus 2 OX=2697049 GN=7a PE=1 SV=1
Length=121
Score = 212 bits (541), Expect = 1e-71, Method: Composition-based stats.
Identities = 104/122 (85%), Positives = 110/122 (90%), Gaps = 1/122 (1%)
Query 1 MKIILFLTLIVFTSCELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTS 60
MKIILFL LI +CELYHYQECVRGTTVLLKEPC SGTYEGNSPFHPLADNKFALTC S
Sbjct 1 MKIILFLALITLATCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFS 60
Query 61 THFAFACADGTRHTYQLRARSVSPKLFIRQEEVQQELYSPLFLIVAALVFLILCFTIKRK 120
T FAFAC DG +H YQLRARSVSPKLFIRQEEV QELYSP+FLIVAA+VF+ LCFT+KRK
Sbjct 61 TQFAFACPDGVKHVYQLRARSVSPKLFIRQEEV-QELYSPIFLIVAAIVFITLCFTLKRK 119
Query 121 TE 122
TE
Sbjct 120 TE 121
>sp|Q7N3E1|MDTC_PHOLL Multidrug resistance protein MdtC OS=Photorhabdus
laumondii subsp. laumondii (strain DSM 15139 / CIP
105565 / TT01) OX=243265 GN=mdtC PE=3 SV=1
Length=1036
Score = 31.1 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 37/81 (46%), Gaps = 12/81 (15%)
Query 48 PLADNKFALTCTSTHFAFACADG----------TRHTYQLRARSVSPKLFIRQEEVQQE- 96
PL+ N L+ ST AF +G R T +LR S F ++ QE
Sbjct 790 PLSVNHQGLSAAST-IAFNVPEGYTLSDAINAIERTTTELRVPSTVRGTFAGTAQIFQET 848
Query 97 LYSPLFLIVAALVFLILCFTI 117
L S LFLI+AA++ + L I
Sbjct 849 LKSQLFLILAAIITVYLVLGI 869
>sp|Q28768|LYAM1_PAPHA L-selectin OS=Papio hamadryas OX=9557 GN=SELL
PE=2 SV=1
Length=372
Score = 30.7 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 25/84 (30%), Positives = 38/84 (45%), Gaps = 18/84 (21%)
Query 47 HPLADNKFALTCTSTHFAFACADGTRHTYQLRARSVSPKLFIRQEEVQQEL--------- 97
HPLA F+ CT F+C++GT + + S ++ + Q+L
Sbjct 274 HPLASFSFSSACT-----FSCSEGTELIGEKKTICESSGIWSNPNPICQKLDRSFSMIKE 328
Query 98 --YSPLFLIVAALV--FLILCFTI 117
Y+PLF+ VA +V F L F I
Sbjct 329 GDYNPLFIPVAVIVTAFSGLAFII 352
>sp|Q95198|LYAM1_MACMU L-selectin OS=Macaca mulatta OX=9544 GN=SELL
PE=2 SV=1
Length=372
Score = 30.3 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 25/84 (30%), Positives = 38/84 (45%), Gaps = 18/84 (21%)
Query 47 HPLADNKFALTCTSTHFAFACADGTRHTYQLRARSVSPKLFIRQEEVQQEL--------- 97
HPLA F+ CT F+C++GT + + S ++ + Q+L
Sbjct 274 HPLASFSFSSACT-----FSCSEGTELIGEKKTICESSGIWSNPNPICQKLDRSFSMIKE 328
Query 98 --YSPLFLIVAALV--FLILCFTI 117
Y+PLF+ VA +V F L F I
Sbjct 329 GDYNPLFIPVAVMVTAFSGLAFII 352
>sp|P80324|OXDA_RHOTO D-amino-acid oxidase OS=Rhodotorula toruloides
OX=5286 GN=DAO1 PE=1 SV=1
Length=368
Score = 29.9 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 0/27 (0%)
Query 22 ECVRGTTVLLKEPCPSGTYEGNSPFHP 48
E +RG TVL+K PC T + + P P
Sbjct 195 EPIRGQTVLVKSPCKRCTMDSSDPASP 221
>sp|P29805|PRTT_SERMA Extracellular serine protease OS=Serratia
marcescens OX=615 PE=3 SV=1
Length=1045
Score = 29.9 bits (66), Expect = 6.7, Method: Composition-based stats.
Identities = 14/36 (39%), Positives = 18/36 (50%), Gaps = 5/36 (14%)
Query 70 GTRHTY-----QLRARSVSPKLFIRQEEVQQELYSP 100
G H + LR PK+FI QE++ QE Y P
Sbjct 380 GIDHLFGWGRVNLRDAINGPKMFITQEDIPQEFYVP 415
>sp|Q8H3A7|XPOT_ORYSJ Exportin-T OS=Oryza sativa subsp. japonica
OX=39947 GN=Os07g0613300 PE=2 SV=1
Length=980
Score = 29.6 bits (65), Expect = 8.4, Method: Composition-based stats.
Identities = 19/56 (34%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query 7 LTLIVFTSC---ELYHYQECVRGTTVLLKEPCPSGTYEGNSP-FHPLADNKFALTC 58
+ L++ TSC E+ H + CV+ L+K+ C S E P F KFA C
Sbjct 831 MQLLLITSCSHKEISHRKTCVQTFVNLIKDWCSSSEIEDKLPGFRVFMIEKFATGC 886
>sp|B6K2P1|EFTS_SCHJY Elongation factor Ts, mitochondrial OS=Schizosaccharomyces
japonicus (strain yFS275 / FY16936) OX=402676
GN=tsf1 PE=3 SV=1
Length=310
Score = 29.2 bits (64), Expect = 9.6, Method: Composition-based stats.
Identities = 23/66 (35%), Positives = 31/66 (47%), Gaps = 13/66 (20%)
Query 48 PLADNKFALTCTSTHFAFACADGTRHTYQ---LRARSVSPK--LFIRQEEVQQELYSPLF 102
PLA F C S C G R Y L +RS S K F ++++QE +P+F
Sbjct 13 PLAKRSF--LCKS------CPSGLRVLYNNILLSSRSYSTKGSAFTLIKKLRQETNAPIF 64
Query 103 LIVAAL 108
LI A+
Sbjct 65 LIKEAV 70
Lambda K H a alpha
0.321 0.146 0.463 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0446 0.140 1.90 42.6 43.6
Effective search space used: 5142531834
Search has CONVERGED!
Database: uniprot_sprot.fasta
Posted date: Apr 3, 2024 12:05 PM
Number of letters in database: 206,678,396
Number of sequences in database: 571,282
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40