PSIBLAST 2.11.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Stephen F.
Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005)
"Protein database searches using compositionally adjusted
substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: uniprot_sprot.fasta
571,282 sequences; 206,678,396 total letters
Results from round 1
Query= sp|P59596|VME1_SARS Membrane protein OS=Severe acute respiratory
syndrome coronavirus OX=694009 GN=M PE=1 SV=1
Length=221
Score E
Sequences producing significant alignments: (Bits) Value
sp|P59596|VME1_SARS Membrane protein OS=Severe acute respiratory ... 452 4e-163
sp|Q3LZX9|VME1_BCHK3 Membrane protein OS=Bat coronavirus HKU3 OX=... 448 8e-162
sp|Q3I5J2|VME1_BCRP3 Membrane protein OS=Bat coronavirus Rp3/2004... 443 7e-160
sp|Q0Q472|VME1_BC279 Membrane protein OS=Bat coronavirus 279/2005... 443 1e-159
sp|P0DTC5|VME1_SARS2 Membrane protein OS=Severe acute respiratory... 416 3e-149
sp|Q0Q4E7|VME1_BC133 Membrane protein OS=Bat coronavirus 133/2005... 194 1e-61
sp|A3EXA0|VME1_BCHK4 Membrane protein OS=Bat coronavirus HKU4 OX=... 194 2e-61
sp|A3EXG9|VME1_BCHK9 Membrane protein OS=Bat coronavirus HKU9 OX=... 191 4e-60
sp|A3EXD6|VME1_BCHK5 Membrane protein OS=Bat coronavirus HKU5 OX=... 188 6e-59
sp|K9N7A1|VME1_MERS1 Membrane protein OS=Middle East respiratory ... 186 3e-58
sp|Q8BB24|VME1_CVP67 Membrane protein OS=Porcine hemagglutinating... 181 5e-56
sp|Q8JSP5|VME1_CVPIA Membrane protein OS=Porcine hemagglutinating... 179 3e-55
sp|Q91A23|VME1_CVBEN Membrane protein OS=Bovine coronavirus (stra... 177 2e-54
sp|P69600|VME1_CVBOK Membrane protein OS=Bovine coronavirus (stra... 176 2e-54
sp|P69599|VME1_CVBLS Membrane protein OS=Bovine coronavirus (stra... 176 2e-54
sp|Q8V433|VME1_CVBLU Membrane protein OS=Bovine coronavirus (stra... 176 3e-54
sp|Q9JEB4|VME1_CVM2 Membrane protein OS=Murine coronavirus (strai... 169 1e-51
sp|Q9QAR9|VME1_CVBLY Membrane protein OS=Bovine coronavirus (stra... 168 4e-51
sp|P69705|VME1_CVBQ Membrane protein OS=Bovine coronavirus (strai... 167 1e-50
sp|P69704|VME1_CVBM Membrane protein OS=Bovine coronavirus (strai... 167 1e-50
sp|P69703|VME1_CVBF Membrane protein OS=Bovine coronavirus (strai... 167 1e-50
sp|Q01455|VME1_CVHOC Membrane protein OS=Human coronavirus OC43 O... 166 4e-50
sp|P26021|VME1_CVTKE Membrane protein OS=Turkey enteric coronavir... 164 2e-49
sp|P03415|VME1_CVMA5 Membrane protein OS=Murine coronavirus (stra... 161 2e-48
sp|P08549|VME1_CVMJH Membrane protein OS=Murine coronavirus (stra... 161 2e-48
sp|Q5MQC7|VME1_CVHN1 Membrane protein OS=Human coronavirus HKU1 (... 155 4e-46
sp|Q9IKC7|VME1_CVRSD Membrane protein OS=Rat coronavirus (strain ... 154 8e-46
sp|Q9WCD1|VME1_CVRNJ Membrane protein (Fragment) OS=Rat coronavir... 154 1e-45
sp|Q0ZME4|VME1_CVHN5 Membrane protein OS=Human coronavirus HKU1 (... 151 1e-44
sp|Q14EA7|VME1_CVHN2 Membrane protein OS=Human coronavirus HKU1 (... 151 2e-44
sp|P59771|VME1_PEDV7 Membrane protein OS=Porcine epidemic diarrhe... 128 2e-35
sp|Q0Q463|VME1_BC512 Membrane protein OS=Bat coronavirus 512/2005... 123 2e-33
sp|P59770|VME1_PEDVB Membrane protein OS=Porcine epidemic diarrhe... 122 3e-33
sp|Q910E2|VME1_IBVG Membrane protein OS=Avian infectious bronchit... 115 1e-30
sp|P69604|VME1_IBVH1 Membrane protein OS=Avian infectious bronchi... 115 2e-30
sp|P69603|VME1_IBVD1 Membrane protein OS=Avian infectious bronchi... 115 2e-30
sp|P69605|VME1_IBV41 Membrane protein OS=Avian infectious bronchi... 115 2e-30
sp|P05136|VME1_IBV6 Membrane protein OS=Avian infectious bronchit... 115 2e-30
sp|Q6Q1R9|VME1_CVHNL Membrane protein OS=Human coronavirus NL63 O... 114 3e-30
sp|P69606|VME1_IBVM Membrane protein OS=Avian infectious bronchit... 114 4e-30
sp|P69607|VME1_IBVH5 Membrane protein OS=Avian infectious bronchi... 114 4e-30
sp|P12649|VME1_IBVK Membrane protein OS=Avian infectious bronchit... 114 5e-30
sp|Q9J3N8|VME1_IBVDE Membrane protein OS=Avian infectious bronchi... 114 6e-30
sp|P11222|VME1_IBVB2 Membrane protein OS=Avian infectious bronchi... 110 7e-29
sp|Q91QS9|VME1_IBVBU Membrane protein OS=Avian infectious bronchi... 110 2e-28
sp|P69602|VME1_IBVBC Membrane protein OS=Avian infectious bronchi... 110 2e-28
sp|P69601|VME1_IBVB Membrane protein OS=Avian infectious bronchit... 110 2e-28
sp|P24412|VME1_CVPRM Membrane protein OS=Porcine respiratory coro... 110 3e-28
sp|P09175|VME1_CVPFS Membrane protein OS=Porcine transmissible ga... 108 1e-27
sp|Q7T6S9|VME1_CVCBG Membrane protein OS=Canine coronavirus (stra... 108 1e-27
sp|P33464|VME1_CVPR8 Membrane protein OS=Porcine respiratory coro... 108 1e-27
sp|P04135|VME1_CVPPU Membrane protein OS=Porcine transmissible ga... 108 2e-27
sp|P25878|VME1_FIPV Membrane protein OS=Feline coronavirus (strai... 108 2e-27
sp|P36299|VME1_CVCAI Membrane protein OS=Canine coronavirus (stra... 103 1e-25
sp|P15422|VME1_CVH22 Membrane protein OS=Human coronavirus 229E O... 83.2 3e-18
sp|H6WS94|PDR1_PETHY Pleiotropic drug resistance protein 1 OS=Pet... 32.0 4.7
sp|H6WS93|PDR1_PETAX Pleiotropic drug resistance protein 1 OS=Pet... 32.0 4.9
sp|Q7WTR3|MDTK_ERWAM Multidrug resistance protein MdtK OS=Erwinia... 31.2 9.0
sp|C5BPV9|IF2_TERTT Translation initiation factor IF-2 OS=Teredin... 31.2 9.4
>sp|P59596|VME1_SARS Membrane protein OS=Severe acute respiratory
syndrome coronavirus OX=694009 GN=M PE=1 SV=1
Length=221
Score = 452 bits (1162), Expect = 4e-163, Method: Compositional matrix adjust.
Identities = 221/221 (100%), Positives = 221/221 (100%), Gaps = 0/221 (0%)
Query 1 MADNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVT 60
MADNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVT
Sbjct 1 MADNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVT 60
Query 61 LACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLN 120
LACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLN
Sbjct 61 LACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLN 120
Query 121 VPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL 180
VPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL
Sbjct 121 VPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL 180
Query 181 GASQRVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALLVQ 221
GASQRVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALLVQ
Sbjct 181 GASQRVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALLVQ 221
>sp|Q3LZX9|VME1_BCHK3 Membrane protein OS=Bat coronavirus HKU3
OX=442736 GN=M PE=3 SV=1
Length=221
Score = 448 bits (1153), Expect = 8e-162, Method: Compositional matrix adjust.
Identities = 218/221 (99%), Positives = 221/221 (100%), Gaps = 0/221 (0%)
Query 1 MADNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVT 60
MADNGTITVEELKQLLEQWNLVIGF+FLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVT
Sbjct 1 MADNGTITVEELKQLLEQWNLVIGFIFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVT 60
Query 61 LACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLN 120
LACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLN
Sbjct 61 LACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLN 120
Query 121 VPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL 180
VPLRGTI+TRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL
Sbjct 121 VPLRGTILTRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL 180
Query 181 GASQRVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALLVQ 221
GASQRVGTDSGFAAYNRYRIGNYKLNTDH+GSNDNIALLVQ
Sbjct 181 GASQRVGTDSGFAAYNRYRIGNYKLNTDHSGSNDNIALLVQ 221
>sp|Q3I5J2|VME1_BCRP3 Membrane protein OS=Bat coronavirus Rp3/2004
OX=349344 GN=M PE=3 SV=1
Length=221
Score = 443 bits (1140), Expect = 7e-160, Method: Compositional matrix adjust.
Identities = 215/221 (97%), Positives = 221/221 (100%), Gaps = 0/221 (0%)
Query 1 MADNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVT 60
MA+NGTI+VEELK+LLEQWNLVIGF+FLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVT
Sbjct 1 MAENGTISVEELKRLLEQWNLVIGFIFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVT 60
Query 61 LACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLN 120
LACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLN
Sbjct 61 LACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLN 120
Query 121 VPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL 180
VPLRGTI+TRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL
Sbjct 121 VPLRGTILTRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL 180
Query 181 GASQRVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALLVQ 221
GASQRVGTDSGFAAYNRYRIGNYKLNTDH+GSNDNIALLVQ
Sbjct 181 GASQRVGTDSGFAAYNRYRIGNYKLNTDHSGSNDNIALLVQ 221
>sp|Q0Q472|VME1_BC279 Membrane protein OS=Bat coronavirus 279/2005
OX=389167 GN=M PE=3 SV=1
Length=221
Score = 443 bits (1139), Expect = 1e-159, Method: Compositional matrix adjust.
Identities = 215/221 (97%), Positives = 219/221 (99%), Gaps = 0/221 (0%)
Query 1 MADNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVT 60
M DNGTITVEELKQLLEQWNLVIGF+FLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVT
Sbjct 1 MTDNGTITVEELKQLLEQWNLVIGFIFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVT 60
Query 61 LACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLN 120
LACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLN
Sbjct 61 LACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLN 120
Query 121 VPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL 180
VPLRGTI+TRPL+ESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL
Sbjct 121 VPLRGTILTRPLLESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL 180
Query 181 GASQRVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALLVQ 221
GASQRVG DSGFAAYNRYRIGNYKLNTDH+GSNDNIALLVQ
Sbjct 181 GASQRVGNDSGFAAYNRYRIGNYKLNTDHSGSNDNIALLVQ 221
>sp|P0DTC5|VME1_SARS2 Membrane protein OS=Severe acute respiratory
syndrome coronavirus 2 OX=2697049 GN=M PE=1 SV=1
Length=222
Score = 416 bits (1070), Expect = 3e-149, Method: Compositional matrix adjust.
Identities = 201/222 (91%), Positives = 214/222 (96%), Gaps = 1/222 (0%)
Query 1 MAD-NGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPV 59
MAD NGTITVEELK+LLEQWNLVIGFLFL WI LLQFAY+NRNRFLYIIKL+FLWLLWPV
Sbjct 1 MADSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPV 60
Query 60 TLACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILL 119
TLACFVLAAVYRINW+TGGIAIAMAC+VGLMWLSYF+ASFRLFARTRSMWSFNPETNILL
Sbjct 61 TLACFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILL 120
Query 120 NVPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYK 179
NVPL GTI+TRPL+ESELVIGAVI+RGHLR+AGH LGRCDIKDLPKEITVATSRTLSYYK
Sbjct 121 NVPLHGTILTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYK 180
Query 180 LGASQRVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALLVQ 221
LGASQRV DSGFAAY+RYRIGNYKLNTDH+ S+DNIALLVQ
Sbjct 181 LGASQRVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALLVQ 222
>sp|Q0Q4E7|VME1_BC133 Membrane protein OS=Bat coronavirus 133/2005
OX=389230 GN=M PE=3 SV=1
Length=219
Score = 194 bits (494), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 93/207 (45%), Positives = 133/207 (64%), Gaps = 0/207 (0%)
Query 1 MADNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVT 60
M+ NG++T +E+ +++ WN +FL ++LQ+ Y +R+ +Y+ K+ LWLLWP +
Sbjct 1 MSSNGSLTKDEVVNIIKDWNFSWSIIFLLITIVLQYGYPSRSMMVYVFKMFILWLLWPAS 60
Query 61 LACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLN 120
+A + +A+Y I+ + I+ +A I +MWL+YFV S RLF RT S WSFNPE+N LLN
Sbjct 61 MALSIFSAIYPISLASQIISGILAAICAVMWLAYFVQSIRLFMRTGSWWSFNPESNCLLN 120
Query 121 VPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL 180
VP+ GT V RPL+E + AV+ GHL+MAG GRCD LP EITVA L K+
Sbjct 121 VPIGGTTVVRPLVEDSTSVTAVVNDGHLKMAGMHFGRCDYDRLPMEITVAKPSVLIALKM 180
Query 181 GASQRVGTDSGFAAYNRYRIGNYKLNT 207
Q GT+SG A ++RY+ GNY+ T
Sbjct 181 VKRQSYGTNSGVAIFHRYKAGNYRRPT 207
>sp|A3EXA0|VME1_BCHK4 Membrane protein OS=Bat coronavirus HKU4
OX=694007 GN=M PE=3 SV=1
Length=219
Score = 194 bits (493), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 93/207 (45%), Positives = 133/207 (64%), Gaps = 0/207 (0%)
Query 1 MADNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVT 60
M+ NG++T +E+ +++ WN +FL ++LQ+ Y +R+ +Y+ K+ LWLLWP +
Sbjct 1 MSSNGSLTKDEVVNIIKDWNFSWSIIFLLITIVLQYGYPSRSMMVYVFKMFILWLLWPAS 60
Query 61 LACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLN 120
+A + +A+Y I+ + I+ +A I +MWL+YFV S RLF RT S WSFNPE+N LLN
Sbjct 61 MALSIFSAIYPISLSSQIISGILAAICAVMWLAYFVQSIRLFMRTGSWWSFNPESNCLLN 120
Query 121 VPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL 180
VP+ GT V RPL+E + AV+ GHL+MAG GRCD LP EITVA L K+
Sbjct 121 VPIGGTTVVRPLVEDSTSVTAVVNDGHLKMAGMHFGRCDYDRLPMEITVAKPSVLIALKM 180
Query 181 GASQRVGTDSGFAAYNRYRIGNYKLNT 207
Q GT+SG A ++RY+ GNY+ T
Sbjct 181 VKRQSYGTNSGVAIFHRYKAGNYRRPT 207
>sp|A3EXG9|VME1_BCHK9 Membrane protein OS=Bat coronavirus HKU9
OX=694006 GN=M PE=3 SV=1
Length=222
Score = 191 bits (484), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 97/223 (43%), Positives = 143/223 (64%), Gaps = 5/223 (2%)
Query 1 MADNGTITVE--ELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWP 58
M++N T TV E+ L+ WN + + L +LLQ+ Y +R + +++IK+ LWLLWP
Sbjct 1 MSNNCTNTVPRPEVIAALKDWNFAVSVILLFITVLLQWGYPSRCKPIWVIKMFILWLLWP 60
Query 59 VTLACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNIL 118
+++A V AA++ IN V G AIA ACI G+MWLSYF++SFRL RT S WSF PET++L
Sbjct 61 LSIAAAVFAAIHPINSVAFGFAIAFACISGIMWLSYFISSFRLLCRTGSAWSFMPETDML 120
Query 119 LNVPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYY 178
+N+PL G VTRP++ + +IIRG LR G +LGRCD D+P +T+A L +Y
Sbjct 121 INIPLLGRTVTRPIISDSPAVQFLIIRGELRFDGFTLGRCDPGDMPDIVTIARPNALHWY 180
Query 179 KLGASQRVGTDSGFAAYNRYRIGNYKL-NTDHAGSNDNIALLV 220
K ++ + T S Y +Y++GN+++ NT G D +A+ V
Sbjct 181 KRALTRNMYTRSAILVYIKYKVGNHRVQNTTEDG--DRLAMFV 221
>sp|A3EXD6|VME1_BCHK5 Membrane protein OS=Bat coronavirus HKU5
OX=694008 GN=M PE=1 SV=1
Length=220
Score = 188 bits (477), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 91/203 (45%), Positives = 130/203 (64%), Gaps = 0/203 (0%)
Query 2 ADNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTL 61
+ N T++ +E+ +L++ WN +FL ++LQ+ Y +R+ F+Y+IK+ LWLLWP ++
Sbjct 3 SSNVTLSNDEVLRLVKDWNFTWSVVFLLITIVLQYGYPSRSMFVYVIKMFVLWLLWPASM 62
Query 62 ACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNV 121
A + AVY I+ + I+ +A MW+SYFV S RLF RT S WSFNPE+N LLNV
Sbjct 63 ALSIFCAVYPIDLASQIISGILAATSCAMWISYFVQSIRLFMRTGSWWSFNPESNCLLNV 122
Query 122 PLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKLG 181
P+ GT V RPL+E + AV+ G+L+MAG G CD + LP E+TVA L K+
Sbjct 123 PIGGTTVVRPLVEDSTSVTAVVTDGYLKMAGMHFGACDFQRLPSEVTVAKPNVLIALKMI 182
Query 182 ASQRVGTDSGFAAYNRYRIGNYK 204
Q GT+SG A Y+RY+ GNY+
Sbjct 183 KRQAYGTNSGVAIYHRYKAGNYR 205
>sp|K9N7A1|VME1_MERS1 Membrane protein OS=Middle East respiratory
syndrome-related coronavirus (isolate United Kingdom/H123990006/2012)
OX=1263720 GN=M PE=3 SV=1
Length=219
Score = 186 bits (472), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 89/204 (44%), Positives = 127/204 (62%), Gaps = 0/204 (0%)
Query 1 MADNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVT 60
M++ +T ++ +++ WN +FL ++LQ+ Y +R+ +Y+ K+ LWLLWP +
Sbjct 1 MSNMTQLTEAQIIAIIKDWNFAWSLIFLLITIVLQYGYPSRSMTVYVFKMFVLWLLWPSS 60
Query 61 LACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLN 120
+A + +AVY I+ + I+ +A + +MW+SYFV S RLF RT S WSFNPETN LLN
Sbjct 61 MALSIFSAVYPIDLASQIISGIVAAVSAMMWISYFVQSIRLFMRTGSWWSFNPETNCLLN 120
Query 121 VPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL 180
VP GT V RPL+E + AV+ GHL+MAG G CD LP E+TVA L K+
Sbjct 121 VPFGGTTVVRPLVEDSTSVTAVVTNGHLKMAGMHFGACDYDRLPNEVTVAKPNVLIALKM 180
Query 181 GASQRVGTDSGFAAYNRYRIGNYK 204
Q GT+SG A Y+RY+ GNY+
Sbjct 181 VKRQSYGTNSGVAIYHRYKAGNYR 204
>sp|Q8BB24|VME1_CVP67 Membrane protein OS=Porcine hemagglutinating
encephalomyelitis virus (strain 67N) OX=230237 GN=M PE=3
SV=1
Length=230
Score = 181 bits (458), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 91/213 (43%), Positives = 132/213 (62%), Gaps = 1/213 (0%)
Query 8 TVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLA 67
T +E + L++WN +G + L ++LQF Y++R+ F+Y+IK+V LWL+WP+T+ +
Sbjct 14 TADEAIKFLKEWNFSLGIIVLFITIILQFGYTSRSMFVYVIKMVILWLMWPLTIILTIFN 73
Query 68 AVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTI 127
VY +N V G +I + +MW+ YFV S RLF RT S WSFNPETN L+ + ++G +
Sbjct 74 CVYALNNVYLGFSIVFTIVAIIMWVVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKGRM 133
Query 128 VTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQRV 186
RP++E + A IIRGHL + G LG + DLP +TVA L YK G R+
Sbjct 134 YVRPIIEDYHTLTATIIRGHLYIQGIKLGTGYSLSDLPAYVTVAKVTHLCTYKRGFLDRI 193
Query 187 GTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALL 219
G SGFA Y + ++GNY+L + H GS + ALL
Sbjct 194 GDTSGFAVYVKSKVGNYRLPSTHKGSGMDTALL 226
>sp|Q8JSP5|VME1_CVPIA Membrane protein OS=Porcine hemagglutinating
encephalomyelitis virus (strain IAF-404) OX=230236 GN=M
PE=3 SV=1
Length=230
Score = 179 bits (453), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 89/213 (42%), Positives = 131/213 (62%), Gaps = 1/213 (0%)
Query 8 TVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLA 67
T +E + L++WN +G + L ++LQF Y++R+ F+Y++K+V LW +WP+T+ +
Sbjct 14 TADEAIKFLKEWNFSLGIIVLFITIILQFGYTSRSMFVYVVKMVILWFMWPLTIILTIFN 73
Query 68 AVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTI 127
VY +N V G +I + +MW+ YFV S RLF RT S WSFNPETN L+ + ++G +
Sbjct 74 CVYALNNVYLGFSIVFTIVAIIMWVVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKGRM 133
Query 128 VTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQRV 186
RP++E + A IIRGHL + G LG + DLP +TVA L YK G R+
Sbjct 134 YVRPIIEDYHTLTATIIRGHLYIQGIKLGTGYSLSDLPAYVTVAKVTHLCTYKRGFLDRI 193
Query 187 GTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALL 219
G SGFA Y + ++GNY+L + H GS + ALL
Sbjct 194 GDTSGFAVYVKSKVGNYRLPSTHKGSGMDTALL 226
>sp|Q91A23|VME1_CVBEN Membrane protein OS=Bovine coronavirus (strain
98TXSF-110-ENT) OX=233262 GN=M PE=3 SV=1
Length=230
Score = 177 bits (448), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 90/215 (42%), Positives = 131/215 (61%), Gaps = 1/215 (0%)
Query 6 TITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFV 65
T T +E + L++WN +G + L ++LQF Y++R+ F+Y+IK+V LWL+WP+T+ +
Sbjct 12 TWTADEAIKFLKEWNFSLGIILLFITVILQFGYTSRSMFVYVIKMVILWLMWPLTIILTI 71
Query 66 LAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRG 125
VY +N V G +I + +MW+ YFV S RLF RT S WSFNPETN L+ + ++G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 126 TIVTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQ 184
+ RP++E + IIRGHL M G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKRGFLD 191
Query 185 RVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALL 219
++G SGFA Y + ++GNY+L + GS + ALL
Sbjct 192 KIGDTSGFAVYVKSKVGNYRLPSTQKGSGLDTALL 226
>sp|P69600|VME1_CVBOK Membrane protein OS=Bovine coronavirus (strain
OK-0514) OX=231432 GN=M PE=3 SV=1
Length=230
Score = 176 bits (447), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 131/215 (61%), Gaps = 1/215 (0%)
Query 6 TITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFV 65
T T +E + L++WN +G + L ++LQF Y++R+ F+Y+IK++ LWL+WP+T+ +
Sbjct 12 TWTADEAIKFLKEWNFSLGIILLFITVILQFGYTSRSMFVYVIKMIILWLMWPLTIILTI 71
Query 66 LAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRG 125
VY +N V G +I + +MW+ YFV S RLF RT S WSFNPETN L+ + ++G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 126 TIVTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQ 184
+ RP++E + IIRGHL M G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKRGFLD 191
Query 185 RVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALL 219
++G SGFA Y + ++GNY+L + GS + ALL
Sbjct 192 KIGDTSGFAVYVKSKVGNYRLPSTQKGSGMDTALL 226
>sp|P69599|VME1_CVBLS Membrane protein OS=Bovine coronavirus (strain
LSU-94LSS-051) OX=233261 GN=M PE=3 SV=1
Length=230
Score = 176 bits (447), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 131/215 (61%), Gaps = 1/215 (0%)
Query 6 TITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFV 65
T T +E + L++WN +G + L ++LQF Y++R+ F+Y+IK++ LWL+WP+T+ +
Sbjct 12 TWTADEAIKFLKEWNFSLGIILLFITVILQFGYTSRSMFVYVIKMIILWLMWPLTIILTI 71
Query 66 LAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRG 125
VY +N V G +I + +MW+ YFV S RLF RT S WSFNPETN L+ + ++G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 126 TIVTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQ 184
+ RP++E + IIRGHL M G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKRGFLD 191
Query 185 RVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALL 219
++G SGFA Y + ++GNY+L + GS + ALL
Sbjct 192 KIGDTSGFAVYVKSKVGNYRLPSTQKGSGMDTALL 226
>sp|Q8V433|VME1_CVBLU Membrane protein OS=Bovine coronavirus (strain
98TXSF-110-LUN) OX=233264 GN=M PE=3 SV=1
Length=230
Score = 176 bits (447), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 131/215 (61%), Gaps = 1/215 (0%)
Query 6 TITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFV 65
T T +E + L++WN +G + L ++LQF Y++R+ F+Y+IK++ LWL+WP+T+ +
Sbjct 12 TWTADEAIKFLKEWNFSLGIILLFITVILQFGYTSRSMFVYVIKMIILWLMWPLTIILTI 71
Query 66 LAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRG 125
VY +N V G +I + +MW+ YFV S RLF RT S WSFNPETN L+ + ++G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 126 TIVTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQ 184
+ RP++E + IIRGHL M G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKRGFLD 191
Query 185 RVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALL 219
++G SGFA Y + ++GNY+L + GS + ALL
Sbjct 192 KIGDTSGFAVYVKSKVGNYRLPSTQKGSGLDTALL 226
>sp|Q9JEB4|VME1_CVM2 Membrane protein OS=Murine coronavirus (strain
2) OX=76344 GN=M PE=1 SV=1
Length=228
Score = 169 bits (429), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 85/212 (40%), Positives = 126/212 (59%), Gaps = 1/212 (0%)
Query 8 TVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLA 67
T +E + L++WN +G + L ++LQF Y++R+ F+Y++K++ LWL+WP+T+ +
Sbjct 15 TADEAIRFLKEWNFSLGIILLFVTIILQFGYTSRSMFVYVVKMILLWLMWPLTIVLCIFN 74
Query 68 AVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTI 127
VY +N V G +I + +MW+ YFV S RLF RT S WSFNPETN L+ ++GT+
Sbjct 75 CVYALNNVYLGFSIVFTIVSIIMWIMYFVNSIRLFIRTGSWWSFNPETNNLMCTDMKGTV 134
Query 128 VTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQRV 186
RP++E + A IIRGHL M G LG + DLP +TVA L YK +V
Sbjct 135 YVRPIIEDYHTLTATIIRGHLYMQGVKLGTGFSLSDLPAYVTVAKVSHLCTYKRAFLDKV 194
Query 187 GTDSGFAAYNRYRIGNYKLNTDHAGSNDNIAL 218
SGFA Y + ++GNY+L ++ D L
Sbjct 195 DGVSGFAVYVKSKVGNYRLPSNKPSGMDTALL 226
>sp|Q9QAR9|VME1_CVBLY Membrane protein OS=Bovine coronavirus (strain
LY-138) OX=11131 GN=M PE=3 SV=1
Length=230
Score = 168 bits (425), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 90/215 (42%), Positives = 131/215 (61%), Gaps = 1/215 (0%)
Query 6 TITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFV 65
T T +E + L++WN +G + L ++LQF Y++R+ F+Y+IK++ LWL+WP+T+ +
Sbjct 12 TWTADEAIKFLKEWNFSLGIILLFITIILQFGYTSRSMFVYVIKMIILWLMWPLTIILTI 71
Query 66 LAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRG 125
VY +N V G +I + +MW+ YFV S RLF RT S WSFNPETN L+ + ++G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 126 TIVTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQ 184
+ RP++E + IIRGHL M G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKRGFLD 191
Query 185 RVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALL 219
R+G SGFA Y + ++GNY+L + GS + ALL
Sbjct 192 RIGDTSGFAVYVKSKVGNYRLPSTQKGSGMDTALL 226
>sp|P69705|VME1_CVBQ Membrane protein OS=Bovine coronavirus (strain
Quebec) OX=11133 GN=M PE=3 SV=1
Length=230
Score = 167 bits (422), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 131/215 (61%), Gaps = 1/215 (0%)
Query 6 TITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFV 65
T T +E + L++WN +G + L ++LQF Y++R+ F+Y+IK++ LWL+WP+T+ +
Sbjct 12 TWTADEAIKFLKEWNFSLGIILLFITIILQFGYTSRSMFVYVIKMIILWLMWPLTIILTI 71
Query 66 LAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRG 125
VY +N V G +I + +MW+ YFV S RLF RT S WSFNPETN L+ + ++G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 126 TIVTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQ 184
+ RP++E + IIRGHL M G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKRGFLD 191
Query 185 RVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALL 219
++G SGFA Y + ++GNY+L + GS + ALL
Sbjct 192 KIGDTSGFAVYVKSKVGNYRLPSTQKGSGMDTALL 226
>sp|P69704|VME1_CVBM Membrane protein OS=Bovine coronavirus (strain
Mebus) OX=11132 GN=M PE=1 SV=1
Length=230
Score = 167 bits (422), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 131/215 (61%), Gaps = 1/215 (0%)
Query 6 TITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFV 65
T T +E + L++WN +G + L ++LQF Y++R+ F+Y+IK++ LWL+WP+T+ +
Sbjct 12 TWTADEAIKFLKEWNFSLGIILLFITIILQFGYTSRSMFVYVIKMIILWLMWPLTIILTI 71
Query 66 LAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRG 125
VY +N V G +I + +MW+ YFV S RLF RT S WSFNPETN L+ + ++G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 126 TIVTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQ 184
+ RP++E + IIRGHL M G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKRGFLD 191
Query 185 RVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALL 219
++G SGFA Y + ++GNY+L + GS + ALL
Sbjct 192 KIGDTSGFAVYVKSKVGNYRLPSTQKGSGMDTALL 226
>sp|P69703|VME1_CVBF Membrane protein OS=Bovine coronavirus (strain
F15) OX=11129 GN=M PE=3 SV=1
Length=230
Score = 167 bits (422), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 131/215 (61%), Gaps = 1/215 (0%)
Query 6 TITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFV 65
T T +E + L++WN +G + L ++LQF Y++R+ F+Y+IK++ LWL+WP+T+ +
Sbjct 12 TWTADEAIKFLKEWNFSLGIILLFITIILQFGYTSRSMFVYVIKMIILWLMWPLTIILTI 71
Query 66 LAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRG 125
VY +N V G +I + +MW+ YFV S RLF RT S WSFNPETN L+ + ++G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 126 TIVTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQ 184
+ RP++E + IIRGHL M G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKRGFLD 191
Query 185 RVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALL 219
++G SGFA Y + ++GNY+L + GS + ALL
Sbjct 192 KIGDTSGFAVYVKSKVGNYRLPSTQKGSGMDTALL 226
>sp|Q01455|VME1_CVHOC Membrane protein OS=Human coronavirus OC43
OX=31631 GN=M PE=1 SV=1
Length=230
Score = 166 bits (419), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 130/213 (61%), Gaps = 1/213 (0%)
Query 8 TVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLA 67
T +E + L++WN +G + L ++LQF Y++R+ F+Y+IK++ LWL+WP+T+ +
Sbjct 14 TADEAIKFLKEWNFSLGIILLFITIILQFGYTSRSMFVYVIKMIILWLMWPLTIILTIFN 73
Query 68 AVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTI 127
VY +N V G++I + +MW+ YFV S RLF RT S WSFNPETN L+ + ++GT+
Sbjct 74 CVYALNNVYLGLSIVFTIVAIIMWIVYFVNSIRLFIRTGSFWSFNPETNNLMCIDMKGTM 133
Query 128 VTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQRV 186
RP++E + IIRGHL + G LG DLP +TVA L YK G R+
Sbjct 134 YVRPIIEDYHTLTVTIIRGHLYIQGIKLGTGYSWADLPAYMTVAKVTHLCTYKRGFLDRI 193
Query 187 GTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALL 219
SGFA Y + ++GNY+L + GS + ALL
Sbjct 194 SDTSGFAVYVKSKVGNYRLPSTQKGSGMDTALL 226
>sp|P26021|VME1_CVTKE Membrane protein OS=Turkey enteric coronavirus
OX=11152 GN=M PE=3 SV=1
Length=230
Score = 164 bits (414), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 88/215 (41%), Positives = 130/215 (60%), Gaps = 1/215 (0%)
Query 6 TITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFV 65
T T +E + L++WN +G + L ++LQF Y++R+ +Y+IK++ LWL+WP+T+ +
Sbjct 12 TWTADEAIKFLKEWNFSLGIILLFITIILQFGYTSRSMSVYVIKMIILWLMWPLTIILTI 71
Query 66 LAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRG 125
VY +N V G +I + +MW+ YFV S RLF RT S WSFNPETN L+ + ++G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 126 TIVTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQ 184
+ RP++E + IIRGHL M G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKRGFLD 191
Query 185 RVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALL 219
++G SGFA Y + ++GNY+L + GS + ALL
Sbjct 192 KIGDTSGFAVYVKSKVGNYRLPSTQKGSGMDTALL 226
>sp|P03415|VME1_CVMA5 Membrane protein OS=Murine coronavirus (strain
A59) OX=11142 GN=M PE=1 SV=1
Length=228
Score = 161 bits (408), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 85/212 (40%), Positives = 127/212 (60%), Gaps = 1/212 (0%)
Query 8 TVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLA 67
T +E Q L++WN +G + L ++LQF Y++R+ F+Y++K++ LWL+WP+T+ +
Sbjct 15 TADEAVQFLKEWNFSLGIILLFITIILQFGYTSRSMFIYVVKMIILWLMWPLTIVLCIFN 74
Query 68 AVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTI 127
VY +N V G +I + ++W+ YFV S RLF RT S WSFNPETN L+ + ++GT+
Sbjct 75 CVYALNNVYLGFSIVFTIVSIVIWIMYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKGTV 134
Query 128 VTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQRV 186
RP++E + A IIRGHL M G LG + DLP +TVA L YK +V
Sbjct 135 YVRPIIEDYHTLTATIIRGHLYMQGVKLGTGFSLSDLPAYVTVAKVSHLCTYKRAFLDKV 194
Query 187 GTDSGFAAYNRYRIGNYKLNTDHAGSNDNIAL 218
SGFA Y + ++GNY+L ++ D L
Sbjct 195 DGVSGFAVYVKSKVGNYRLPSNKPSGADTALL 226
>sp|P08549|VME1_CVMJH Membrane protein OS=Murine coronavirus (strain
JHM) OX=11144 GN=M PE=1 SV=1
Length=228
Score = 161 bits (407), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 84/212 (40%), Positives = 126/212 (59%), Gaps = 1/212 (0%)
Query 8 TVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLA 67
T +E Q L++WN +G + L ++LQF Y++R+ F+Y++K++ LWL+WP+ + +
Sbjct 15 TADEAVQFLKEWNFSLGIILLFITIILQFGYTSRSMFIYVVKMIILWLMWPLIIVLCMFN 74
Query 68 AVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTI 127
VY +N V G +I + +MW+ YFV S RLF RT S WSFNPETN L+ + ++GT+
Sbjct 75 CVYALNNVYLGFSIVFTIVSVVMWIMYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKGTV 134
Query 128 VTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQRV 186
RP++E + A IIRGH M G LG + DLP +TVA L YK +V
Sbjct 135 YVRPIIEDYHTLTATIIRGHFYMQGVKLGTGFSLSDLPAYVTVAKVSHLCTYKRAFLDKV 194
Query 187 GTDSGFAAYNRYRIGNYKLNTDHAGSNDNIAL 218
SGFA Y + ++GNY+L ++ D + L
Sbjct 195 DGVSGFAVYVKSKVGNYRLPSNKPSGADTVLL 226
>sp|Q5MQC7|VME1_CVHN1 Membrane protein OS=Human coronavirus HKU1
(isolate N1) OX=443239 GN=M PE=3 SV=1
Length=223
Score = 155 bits (392), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 123/212 (58%), Gaps = 1/212 (0%)
Query 8 TVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLA 67
T ++ L++WN +G + L ++LQF Y++R+ F+Y+IK++ LWL+WP+T+ +
Sbjct 10 TSDQAVTFLKEWNFSLGVILLFITIILQFGYTSRSMFVYLIKMIILWLMWPLTITLTIFN 69
Query 68 AVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTI 127
Y +N +I I ++W+ YFV S RLF RT S WSFNPETN L+ + ++G +
Sbjct 70 CFYALNNAFLAFSIVFTIISIVIWILYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKGKM 129
Query 128 VTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQRV 186
RP++E + A +IRGHL + G LG + DLP +TVA + L YK ++
Sbjct 130 FVRPVIEDYHTLTATVIRGHLYIQGVKLGTGYTLSDLPVYVTVAKVQVLCTYKRAFLDKL 189
Query 187 GTDSGFAAYNRYRIGNYKLNTDHAGSNDNIAL 218
+SGFA + + ++GNY+L + D L
Sbjct 190 DVNSGFAVFVKSKVGNYRLPSSKPSGMDTALL 221
>sp|Q9IKC7|VME1_CVRSD Membrane protein OS=Rat coronavirus (strain
681) OX=33740 GN=M PE=3 SV=1
Length=228
Score = 154 bits (390), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 82/212 (39%), Positives = 126/212 (59%), Gaps = 1/212 (0%)
Query 8 TVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLA 67
T + + L++WN ++G + L ++LQF Y++R+ F+Y++K++ LWL+WP+T+ +
Sbjct 15 TADVAVRFLKEWNFLLGIILLFITIILQFGYTSRSMFIYVVKMIILWLMWPLTIVLCIFN 74
Query 68 AVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTI 127
VY +N V G +I + +MW+ YFV S RLF RT S WSFNPETN L+ + ++GT+
Sbjct 75 CVYALNNVYLGFSIVFTIVSIVMWIMYFVNSIRLFIRTGSWWSFNPETNNLMCIDVKGTV 134
Query 128 VTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQRV 186
RP++E + A +RGHL M G LG + DLP +TVA L YK +V
Sbjct 135 YVRPIIEDYHTLTATNVRGHLYMQGVKLGTGFSLSDLPAYVTVAKVSHLCTYKRAFLDKV 194
Query 187 GTDSGFAAYNRYRIGNYKLNTDHAGSNDNIAL 218
SGFA Y + ++GNY+L ++ D L
Sbjct 195 DGVSGFAVYVKSKVGNYRLPSNKPSGADTALL 226
>sp|Q9WCD1|VME1_CVRNJ Membrane protein (Fragment) OS=Rat coronavirus
(strain NJ) OX=231433 GN=M PE=3 SV=1
Length=222
Score = 154 bits (389), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 82/212 (39%), Positives = 126/212 (59%), Gaps = 1/212 (0%)
Query 8 TVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLA 67
T + + L++WN ++G + L ++LQF Y++R+ F+Y++K++ LWL+WP+T+ +
Sbjct 9 TADVAVRFLKEWNFLLGIILLFITIILQFGYTSRSMFIYVVKMIILWLMWPLTIVLCIFN 68
Query 68 AVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTI 127
VY +N V G +I + +MW+ YFV S RLF RT S WSFNPETN L+ + ++GT+
Sbjct 69 CVYALNNVYLGFSIVFTIVSIVMWIMYFVNSIRLFIRTGSWWSFNPETNNLMCIDVKGTV 128
Query 128 VTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQRV 186
RP++E + A +RGHL M G LG + DLP +TVA L YK +V
Sbjct 129 YVRPIIEDYHTLTATNVRGHLYMQGVKLGTGFSLSDLPAYVTVAKVSHLCTYKRAFLDKV 188
Query 187 GTDSGFAAYNRYRIGNYKLNTDHAGSNDNIAL 218
SGFA Y + ++GNY+L ++ D L
Sbjct 189 DGVSGFAVYVKSKVGNYRLPSNKPSGVDTALL 220
>sp|Q0ZME4|VME1_CVHN5 Membrane protein OS=Human coronavirus HKU1
(isolate N5) OX=443241 GN=M PE=3 SV=1
Length=223
Score = 151 bits (382), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 126/210 (60%), Gaps = 1/210 (0%)
Query 10 EELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLAAV 69
++ L++WN +G + L ++LQF Y++R+ F+Y+IK++ LWL+WP+T+ +
Sbjct 12 DQAITFLKEWNFSLGVILLLITIILQFGYTSRSMFVYLIKMIILWLMWPLTIILTIFNCF 71
Query 70 YRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTIVT 129
Y +N V G++I I ++W+ YFV S RLF RT S WSFNPETN L+ + ++G +
Sbjct 72 YALNNVFLGLSILFTIISIVIWILYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKGKMYV 131
Query 130 RPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQRVGT 188
RP++E + A +IRGHL + G LG + DLP +TVA + L YK ++
Sbjct 132 RPVIEDYHTLTATVIRGHLYIQGVKLGTGYTLADLPVYVTVAKVQVLCTYKRAFLDKLDV 191
Query 189 DSGFAAYNRYRIGNYKLNTDHAGSNDNIAL 218
+SGFA + + ++GNY+L + + D L
Sbjct 192 NSGFAVFVKSKVGNYRLPSSKSSGMDTALL 221
>sp|Q14EA7|VME1_CVHN2 Membrane protein OS=Human coronavirus HKU1
(isolate N2) OX=443240 GN=M PE=3 SV=1
Length=223
Score = 151 bits (381), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 77/210 (37%), Positives = 126/210 (60%), Gaps = 1/210 (0%)
Query 10 EELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLAAV 69
++ L++WN +G + L ++LQF Y++R+ F+Y+IK++ LWL+WP+T+ +
Sbjct 12 DQAITFLKEWNFSLGVILLLITIILQFGYTSRSMFVYLIKMIILWLMWPLTIILTIFNCF 71
Query 70 YRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTIVT 129
Y +N + G++I I ++W+ YFV S RLF RT S WSFNPETN L+ + ++G +
Sbjct 72 YALNNIFLGLSILFTIISIVIWILYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKGKMYV 131
Query 130 RPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQRVGT 188
RP++E + A +IRGHL + G LG + DLP +TVA + L YK ++
Sbjct 132 RPVIEDYHTLTATVIRGHLYIQGVKLGTGYTLADLPVYVTVAKVQVLCTYKRAFLDKLDV 191
Query 189 DSGFAAYNRYRIGNYKLNTDHAGSNDNIAL 218
+SGFA + + ++GNY+L + + D L
Sbjct 192 NSGFAVFVKSKVGNYRLPSSKSSGMDTALL 221
>sp|P59771|VME1_PEDV7 Membrane protein OS=Porcine epidemic diarrhea
virus (strain CV777) OX=229032 GN=M PE=3 SV=1
Length=226
Score = 128 bits (321), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 116/206 (56%), Gaps = 4/206 (2%)
Query 3 DNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLA 62
NG+I V+E+ + L WN + +++LQ+ + + FLY +K+ LW+LWP+ LA
Sbjct 2 SNGSIPVDEVIEHLRNWNFTWNIILTILLVVLQYGHYKYSVFLYGVKMAILWILWPLVLA 61
Query 63 C--FVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLN 120
F A +++NWV +I MACI ++W+ YFV S RL+ RT S WSFNPET+ LL
Sbjct 62 LSLFDAWASFQVNWVFFAFSILMACITLMLWIMYFVNSIRLWRRTHSWWSFNPETDALLT 121
Query 121 VPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVA-TSRTLSYY 178
+ G V P++ + + ++ G L + G+ + + LP +TVA + T+ Y
Sbjct 122 TSVMGRQVCIPVLGAPTGVTLTLLSGTLFVEGYKVATGVQVSQLPNFVTVAKATTTIVYG 181
Query 179 KLGASQRVGTDSGFAAYNRYRIGNYK 204
++G S + +G+A Y R + G+Y
Sbjct 182 RVGRSVNASSGTGWAFYVRSKHGDYS 207
>sp|Q0Q463|VME1_BC512 Membrane protein OS=Bat coronavirus 512/2005
OX=693999 GN=M PE=3 SV=1
Length=227
Score = 123 bits (308), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 119/207 (57%), Gaps = 4/207 (2%)
Query 1 MADNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVT 60
M+ N ++ VEE+ + L WN + +++LQ+ + +R LY +K+ LWLLWP+
Sbjct 1 MSSNQSVPVEEVIKHLRNWNFSWNIILTILLVVLQYGHYKYSRVLYGLKMAILWLLWPLV 60
Query 61 LA--CFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNIL 118
LA F A + +NWV +I MAC+ ++W+ YFV S RL+ RT S WS+NPET+ +
Sbjct 61 LALSIFDAWASFNVNWVFFAFSILMACVTAVLWIMYFVNSIRLWRRTHSWWSYNPETDSI 120
Query 119 LNVPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVA-TSRTLS 176
L+V + G V P++ + + ++ G L + G+ + + +LP +TVA S T+
Sbjct 121 LSVSVLGRHVCLPILGAPTGVTLTLLNGTLLVEGYQVATGVQVNNLPGYVTVAKASTTIV 180
Query 177 YYKLGASQRVGTDSGFAAYNRYRIGNY 203
Y ++G S + +G+A + + + G+Y
Sbjct 181 YQRVGRSMNANSSTGWAFFVKSKHGDY 207
>sp|P59770|VME1_PEDVB Membrane protein OS=Porcine epidemic diarrhea
virus (strain Br1/87) OX=229033 GN=M PE=3 SV=1
Length=226
Score = 122 bits (306), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 116/206 (56%), Gaps = 4/206 (2%)
Query 3 DNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLA 62
NG+I V+E+ + L WN + +++LQ+ + + FLY +K+ LW+LWP+ LA
Sbjct 2 SNGSIPVDEVIEHLRNWNFTWNIILTILLVVLQYGHYKYSVFLYGVKMAILWILWPLVLA 61
Query 63 C--FVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLN 120
F A +++NWV +I MACI ++W+ YFV S RL+ RT S WSFNPET+ LL
Sbjct 62 LSLFDAWASFQVNWVFFAFSILMACITLMLWIMYFVNSIRLWRRTHSWWSFNPETDALLT 121
Query 121 VPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVA-TSRTLSYY 178
+ G V P++ + + ++ G L + G+ + + LP +TVA + T+ Y
Sbjct 122 TSVMGRQVCIPVLGAPTGVTLTLLSGTLLVEGYKVATGVQVSQLPNFVTVAKATTTIVYG 181
Query 179 KLGASQRVGTDSGFAAYNRYRIGNYK 204
++G S + +G+A Y R + G+Y
Sbjct 182 RVGRSVNASSGTGWAFYVRSKHGDYS 207
>sp|Q910E2|VME1_IBVG Membrane protein OS=Avian infectious bronchitis
virus (strain Gray) OX=31624 GN=M PE=2 SV=1
Length=223
Score = 115 bits (288), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/206 (34%), Positives = 112/206 (54%), Gaps = 10/206 (5%)
Query 1 MADNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVT 60
MA+N T+ E+ L +++NL I L +LLQ+ Y+ R+R +YI+K++ LW WP+
Sbjct 1 MAENCTLDSEQAVLLFKEYNLFITAFLLFLTILLQYGYATRSRTIYILKMIVLWCFWPLN 60
Query 61 LACFVLAAVYRINWVTGGI--AIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNIL 118
+A V++ +Y N TGG+ AI + L ++ Y++ S RLF R RS WSFNPE+N +
Sbjct 61 IAVGVISCIYPPN--TGGLVAAIILTVFACLSFVGYWIQSCRLFKRCRSWWSFNPESNAV 118
Query 119 LNVPLRGTIVTRPLMES-ELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSY 177
++ L +ES +V+ +I G L G L +C+ LPK+I V T +
Sbjct 119 GSILLTNGQQCNFAIESVPMVLAPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNI 178
Query 178 YKLGASQRVGTDSGFAAYNRYRIGNY 203
Y++ + G SG N+ R +
Sbjct 179 YRM-VQKYTGDQSG----NKKRFATF 199
>sp|P69604|VME1_IBVH1 Membrane protein OS=Avian infectious bronchitis
virus (strain H120) OX=231424 GN=M PE=3 SV=1
Length=225
Score = 115 bits (288), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 112/203 (55%), Gaps = 10/203 (5%)
Query 4 NGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLAC 63
N T+ E+ +L +++NL I L ++LQ+ Y+ R++F+YI+K++ LW WP+ +A
Sbjct 6 NCTLDFEQSVELFKEYNLFITAFLLFLTIILQYGYATRSKFIYILKMIVLWCFWPLNIAV 65
Query 64 FVLAAVYRINWVTGGI--AIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNV 121
V++ +Y N TGG+ AI + L ++ Y++ S RLF R RS WSFNPE+N + ++
Sbjct 66 GVISCIYPPN--TGGLVAAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVGSI 123
Query 122 PLRGTIVTRPLMES-ELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL 180
L +ES +V+ +I G L G L +C+ LPK+I V T + Y++
Sbjct 124 LLTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIYRM 183
Query 181 GASQRVGTDSGFAAYNRYRIGNY 203
+ +G SG N+ R +
Sbjct 184 -VQKYIGDQSG----NKKRFATF 201
>sp|P69603|VME1_IBVD1 Membrane protein OS=Avian infectious bronchitis
virus (strain D1466) OX=231472 GN=M PE=3 SV=1
Length=225
Score = 115 bits (288), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 112/203 (55%), Gaps = 10/203 (5%)
Query 4 NGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLAC 63
N T+ E+ +L +++NL I L ++LQ+ Y+ R++F+YI+K++ LW WP+ +A
Sbjct 6 NCTLDFEQSVELFKEYNLFITAFLLFLTIILQYGYATRSKFIYILKMIVLWCFWPLNIAV 65
Query 64 FVLAAVYRINWVTGGI--AIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNV 121
V++ +Y N TGG+ AI + L ++ Y++ S RLF R RS WSFNPE+N + ++
Sbjct 66 GVISCIYPPN--TGGLVAAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVGSI 123
Query 122 PLRGTIVTRPLMES-ELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL 180
L +ES +V+ +I G L G L +C+ LPK+I V T + Y++
Sbjct 124 LLTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIYRM 183
Query 181 GASQRVGTDSGFAAYNRYRIGNY 203
+ +G SG N+ R +
Sbjct 184 -VQKYIGDQSG----NKKRFATF 201
>sp|P69605|VME1_IBV41 Membrane protein OS=Avian infectious bronchitis
virus (strain D41) OX=236988 GN=M PE=3 SV=1
Length=225
Score = 115 bits (288), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 112/203 (55%), Gaps = 10/203 (5%)
Query 4 NGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLAC 63
N T+ E+ +L +++NL I L ++LQ+ Y+ R++F+YI+K++ LW WP+ +A
Sbjct 6 NCTLDFEQSVELFKEYNLFITAFLLFLTIILQYGYATRSKFIYILKMIVLWCFWPLNIAV 65
Query 64 FVLAAVYRINWVTGGI--AIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNV 121
V++ +Y N TGG+ AI + L ++ Y++ S RLF R RS WSFNPE+N + ++
Sbjct 66 GVISCIYPPN--TGGLVAAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVGSI 123
Query 122 PLRGTIVTRPLMES-ELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL 180
L +ES +V+ +I G L G L +C+ LPK+I V T + Y++
Sbjct 124 LLTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIYRM 183
Query 181 GASQRVGTDSGFAAYNRYRIGNY 203
+ +G SG N+ R +
Sbjct 184 -VQKYIGDQSG----NKKRFATF 201
>sp|P05136|VME1_IBV6 Membrane protein OS=Avian infectious bronchitis
virus (strain 6/82) OX=11121 GN=M PE=3 SV=1
Length=225
Score = 115 bits (287), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 110/203 (54%), Gaps = 10/203 (5%)
Query 4 NGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLAC 63
N T+ E+ QL +++NL + L +LLQ+ Y+ RN+ +YI+K++ LW WP+ +A
Sbjct 6 NCTLGTEQAVQLFKEYNLFVTAFLLFLTILLQYGYATRNKVIYILKMIVLWCFWPLNIAV 65
Query 64 FVLAAVYRINWVTGGI--AIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNV 121
++ +Y N TGG+ AI + L ++ Y++ SFRLF R RS W+FNPE+N + ++
Sbjct 66 GAISCIYPPN--TGGLVAAIILTVFACLSFIGYWIQSFRLFKRCRSWWAFNPESNAVGSI 123
Query 122 PLRGTIVTRPLMES-ELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL 180
L +ES +V+ +I G L G L +C+ LPK+I V T + Y++
Sbjct 124 LLTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIYRM 183
Query 181 GASQRVGTDSGFAAYNRYRIGNY 203
+ G SG N+ R +
Sbjct 184 -VQRYTGDQSG----NKKRFATF 201
>sp|Q6Q1R9|VME1_CVHNL Membrane protein OS=Human coronavirus NL63
OX=277944 GN=M PE=3 SV=1
Length=226
Score = 114 bits (286), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 115/209 (55%), Gaps = 10/209 (5%)
Query 3 DNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLA 62
N ++ + E+ L WN + +I++LQ+ + +R LY +K+ LW LWP+ LA
Sbjct 2 SNSSVPLLEVYVHLRNWNFSWNLILTLFIVVLQYGHYKYSRLLYGLKMSVLWCLWPLVLA 61
Query 63 -----CFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNI 117
CFV + ++WV G +I M+ I +W+ YFV SFRL+ R ++ W+FNPETN
Sbjct 62 LSIFDCFV---NFNVDWVFFGFSILMSIITLCLWVMYFVNSFRLWRRVKTFWAFNPETNA 118
Query 118 LLNVPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLG-RCDIKDLPKEITVAT-SRTL 175
++++ + G P+M + + ++ G L + GH + R + LPK + VAT S T+
Sbjct 119 IISLQVYGHNYYLPVMAAPTGVTLTLLSGVLLVDGHKIATRVQVGQLPKYVIVATPSTTI 178
Query 176 SYYKLGASQRVGTDSGFAAYNRYRIGNYK 204
++G S + +G+A Y R + G++
Sbjct 179 VCDRVGRSVNETSQTGWAFYVRAKHGDFS 207
>sp|P69606|VME1_IBVM Membrane protein OS=Avian infectious bronchitis
virus (strain M41) OX=11127 GN=M PE=2 SV=1
Length=225
Score = 114 bits (285), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 111/203 (55%), Gaps = 10/203 (5%)
Query 4 NGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLAC 63
N T+ E+ +L +++NL I L ++LQ+ Y+ R++F+YI+K++ LW WP+ +A
Sbjct 6 NCTLDFEQSVELFKEYNLFITAFLLFLTIILQYGYATRSKFIYILKMIVLWCFWPLNIAV 65
Query 64 FVLAAVYRINWVTGGI--AIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNV 121
V++ +Y N TGG+ AI + L ++ Y++ S RLF R RS WSFNPE+N + ++
Sbjct 66 GVISCIYPPN--TGGLVAAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVGSI 123
Query 122 PLRGTIVTRPLMES-ELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL 180
L +ES +V+ +I G L G L +C+ LPK+I V T + Y++
Sbjct 124 LLTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIYRM 183
Query 181 GASQRVGTDSGFAAYNRYRIGNY 203
+ G SG N+ R +
Sbjct 184 -VQKYTGDQSG----NKKRFATF 201
>sp|P69607|VME1_IBVH5 Membrane protein OS=Avian infectious bronchitis
virus (strain H52) OX=231425 GN=M PE=2 SV=1
Length=225
Score = 114 bits (285), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 111/203 (55%), Gaps = 10/203 (5%)
Query 4 NGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLAC 63
N T+ E+ +L +++NL I L ++LQ+ Y+ R++F+YI+K++ LW WP+ +A
Sbjct 6 NCTLDFEQSVELFKEYNLFITAFLLFLTIILQYGYATRSKFIYILKMIVLWCFWPLNIAV 65
Query 64 FVLAAVYRINWVTGGI--AIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNV 121
V++ +Y N TGG+ AI + L ++ Y++ S RLF R RS WSFNPE+N + ++
Sbjct 66 GVISCIYPPN--TGGLVAAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVGSI 123
Query 122 PLRGTIVTRPLMES-ELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL 180
L +ES +V+ +I G L G L +C+ LPK+I V T + Y++
Sbjct 124 LLTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIYRM 183
Query 181 GASQRVGTDSGFAAYNRYRIGNY 203
+ G SG N+ R +
Sbjct 184 -VQKYTGDQSG----NKKRFATF 201
>sp|P12649|VME1_IBVK Membrane protein OS=Avian infectious bronchitis
virus (strain KB8523) OX=11126 GN=M PE=3 SV=1
Length=225
Score = 114 bits (284), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 111/203 (55%), Gaps = 10/203 (5%)
Query 4 NGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLAC 63
N T+ E+ +L +++NL I L ++LQ+ Y+ R RF+YI+K++ LW WP+ +A
Sbjct 6 NCTLDFEQSVELFKEYNLFITAFLLFLTIILQYGYATRIRFIYILKMIVLWCFWPLNIAV 65
Query 64 FVLAAVYRINWVTGGI--AIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNV 121
V++ +Y N TGG+ AI + L ++ Y++ S RLF R RS WSFNPE+N + ++
Sbjct 66 GVISCIYPPN--TGGLVAAIILTVFACLSFVGYWIQSCRLFKRCRSWWSFNPESNAVGSI 123
Query 122 PLRGTIVTRPLMES-ELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL 180
L +ES +V+ +I G L G L +C+ LPK+I V T+ + Y++
Sbjct 124 LLTNGQQCNFAIESVPMVLAPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTADRRNIYRM 183
Query 181 GASQRVGTDSGFAAYNRYRIGNY 203
+ G SG N+ R +
Sbjct 184 -VQKYTGDQSG----NKKRFATF 201
>sp|Q9J3N8|VME1_IBVDE Membrane protein OS=Avian infectious bronchitis
virus (strain DE072) OX=233265 GN=M PE=3 SV=2
Length=225
Score = 114 bits (284), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 110/203 (54%), Gaps = 10/203 (5%)
Query 4 NGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLAC 63
N T+ E+ +L +++NL I L ++LQ+ Y+ R++F+YI+K++ LW WP+ +A
Sbjct 6 NCTLDFEQSVELFKEYNLFITAFLLFLTIILQYGYATRSKFIYILKMIVLWCFWPLNIAV 65
Query 64 FVLAAVYRINWVTGGI--AIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNV 121
V++ +Y N TGG+ AI + L ++ Y++ S RLF R RS WSFNPE+N + ++
Sbjct 66 GVISCIYPPN--TGGLVAAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVGSI 123
Query 122 PLRGTIVTRPLMES-ELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL 180
L +ES V+ +I G L G L +C+ LPK+I V T + Y++
Sbjct 124 LLTNGQQCNFAIESVPTVLSPIIKNGFLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIYRM 183
Query 181 GASQRVGTDSGFAAYNRYRIGNY 203
+ G SG N+ R +
Sbjct 184 -VQKYTGDQSG----NKKRFATF 201
>sp|P11222|VME1_IBVB2 Membrane protein OS=Avian infectious bronchitis
virus (strain Beaudette M42) OX=11123 GN=M PE=1 SV=1
Length=225
Score = 110 bits (276), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 66/203 (33%), Positives = 109/203 (54%), Gaps = 10/203 (5%)
Query 4 NGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLAC 63
N T+ E+ QL +++NL I L ++LQ+ Y+ R++ +Y +K++ LW WP+ +A
Sbjct 6 NCTLDFEQSVQLFKEYNLFITAFLLFLTIILQYGYATRSKVIYTLKMIVLWCFWPLNIAV 65
Query 64 FVLAAVYRINWVTGGI--AIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNV 121
V++ +Y N TGG+ AI + L ++ Y++ S RLF R RS WSFNPE+N + ++
Sbjct 66 GVISCIYPPN--TGGLVAAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVGSI 123
Query 122 PLRGTIVTRPLMES-ELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL 180
L +ES +V+ +I G L G L +C+ LPK+I V T + Y++
Sbjct 124 LLTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIYRM 183
Query 181 GASQRVGTDSGFAAYNRYRIGNY 203
+ G SG N+ R +
Sbjct 184 -VQKYTGDQSG----NKKRFATF 201
>sp|Q91QS9|VME1_IBVBU Membrane protein OS=Avian infectious bronchitis
virus (strain Beaudette US) OX=160750 GN=M PE=3 SV=1
Length=225
Score = 110 bits (274), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/203 (33%), Positives = 107/203 (53%), Gaps = 10/203 (5%)
Query 4 NGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLAC 63
N T+ E+ QL +++NL I L ++LQ+ Y+ R + +Y +K++ LW WP+ +A
Sbjct 6 NCTLDFEQSVQLFKEYNLFITAFLLFLTIILQYGYATRTKVIYTLKMIVLWCFWPLNIAV 65
Query 64 FVLAAVYRINWVTGG--IAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNV 121
V++ Y N TGG +AI + L ++ Y++ S RLF R RS WSFNPE+N + ++
Sbjct 66 GVISCTYPPN--TGGLVVAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVGSI 123
Query 122 PLRGTIVTRPLMES-ELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL 180
L +ES +V+ +I G L G L +C+ LPK+I V T + Y++
Sbjct 124 LLTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIYRM 183
Query 181 GASQRVGTDSGFAAYNRYRIGNY 203
+ G SG N+ R +
Sbjct 184 -VQKYTGDQSG----NKKRFATF 201
>sp|P69602|VME1_IBVBC Membrane protein OS=Avian infectious bronchitis
virus (strain Beaudette CK) OX=160235 GN=M PE=3 SV=1
Length=225
Score = 110 bits (274), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/203 (33%), Positives = 108/203 (53%), Gaps = 10/203 (5%)
Query 4 NGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLAC 63
N T+ E+ QL +++NL I L ++LQ+ Y+ R++ +Y +K++ LW WP+ +A
Sbjct 6 NCTLDFEQSVQLFKEYNLFITAFLLFLTIILQYGYATRSKVIYTLKMIVLWCFWPLNIAV 65
Query 64 FVLAAVYRINWVTGGI--AIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNV 121
V++ Y N TGG+ AI + L ++ Y++ S RLF R RS WSFNPE+N + ++
Sbjct 66 GVISCTYPPN--TGGLVAAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVGSI 123
Query 122 PLRGTIVTRPLMES-ELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL 180
L +ES +V+ +I G L G L +C+ LPK+I V T + Y++
Sbjct 124 LLTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIYRM 183
Query 181 GASQRVGTDSGFAAYNRYRIGNY 203
+ G SG N+ R +
Sbjct 184 -VQKYTGDQSG----NKKRFATF 201
>sp|P69601|VME1_IBVB Membrane protein OS=Avian infectious bronchitis
virus (strain Beaudette) OX=11122 GN=M PE=3 SV=1
Length=225
Score = 110 bits (274), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/203 (33%), Positives = 108/203 (53%), Gaps = 10/203 (5%)
Query 4 NGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLAC 63
N T+ E+ QL +++NL I L ++LQ+ Y+ R++ +Y +K++ LW WP+ +A
Sbjct 6 NCTLDFEQSVQLFKEYNLFITAFLLFLTIILQYGYATRSKVIYTLKMIVLWCFWPLNIAV 65
Query 64 FVLAAVYRINWVTGGI--AIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNV 121
V++ Y N TGG+ AI + L ++ Y++ S RLF R RS WSFNPE+N + ++
Sbjct 66 GVISCTYPPN--TGGLVAAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVGSI 123
Query 122 PLRGTIVTRPLMES-ELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL 180
L +ES +V+ +I G L G L +C+ LPK+I V T + Y++
Sbjct 124 LLTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIYRM 183
Query 181 GASQRVGTDSGFAAYNRYRIGNY 203
+ G SG N+ R +
Sbjct 184 -VQKYTGDQSG----NKKRFATF 201
>sp|P24412|VME1_CVPRM Membrane protein OS=Porcine respiratory
coronavirus (strain RM4) OX=11148 GN=M PE=3 SV=1
Length=262
Score = 110 bits (275), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/217 (33%), Positives = 118/217 (54%), Gaps = 7/217 (3%)
Query 11 ELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLAAV- 69
+L LL WN + + +I +LQ+ + F+Y IK++ +WLLWP+ LA + A
Sbjct 46 DLIWLLANWNFSWSIILIIFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYS 105
Query 70 -YRIN-WVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTI 127
Y+++ +V G +IA A + ++W+ YFV S +L+ RT+S WSFNPETN +L V G
Sbjct 106 EYQVSRYVMFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALGRS 165
Query 128 VTRPLMESELVIGAVIIRGHLRMAGHSL-GRCDIKDLPKEITVA-TSRTLSYYKLGASQR 185
PL + ++ G+L G + G I +LPK + VA SRT+ Y +G +
Sbjct 166 YVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMTIDNLPKYVMVALPSRTIVYTLVGKKLK 225
Query 186 VGTDSGFAAYNRYRIGNY--KLNTDHAGSNDNIALLV 220
+ +G+A Y + + G+Y + TD+ + + +V
Sbjct 226 ASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV 262
>sp|P09175|VME1_CVPFS Membrane protein OS=Porcine transmissible
gastroenteritis coronavirus (strain FS772/70) OX=11150 GN=M
PE=1 SV=1
Length=262
Score = 108 bits (271), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 116/212 (55%), Gaps = 7/212 (3%)
Query 16 LEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLAAV--YRIN 73
L WN + + +I +LQ+ + F+Y IK++ +WLLWP+ LA + A Y+++
Sbjct 51 LANWNFSWSIILIIFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVS 110
Query 74 -WVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTIVTRPL 132
+V G++IA A + ++W+ YFV S +L+ RT+S WSFNPE N +L V G PL
Sbjct 111 RYVMFGVSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPEINAILCVSALGRSYVLPL 170
Query 133 MESELVIGAVIIRGHLRMAGHSL-GRCDIKDLPKEITVA-TSRTLSYYKLGASQRVGTDS 190
+ ++ G+L G + G +I +LPK + VA SRT+ Y +G + + +
Sbjct 171 EGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSRTIVYTLVGKKLKASSAT 230
Query 191 GFAAYNRYRIGNYKLN--TDHAGSNDNIALLV 220
G+A Y + + G+Y + TD+ + + +V
Sbjct 231 GWAYYVKSKAGDYSTDARTDNLSEQEKLLHMV 262
>sp|Q7T6S9|VME1_CVCBG Membrane protein OS=Canine coronavirus (strain
BGF10) OX=441619 GN=M PE=3 SV=1
Length=262
Score = 108 bits (270), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/212 (32%), Positives = 115/212 (54%), Gaps = 7/212 (3%)
Query 16 LEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLAAV--YRIN 73
L WN + + +I +LQ+ + F+Y +K++ +WLLWP+ LA + A Y ++
Sbjct 51 LANWNFSWSVILIVFITVLQYGRPQFSWFVYGVKMLIMWLLWPIVLALTIFNAYSEYEVS 110
Query 74 -WVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTIVTRPL 132
+V G ++A A + ++W+ YFV S +L+ RT+S WSFNPETN +L V G PL
Sbjct 111 RYVMFGFSVAGAIVTFILWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALGRSYVLPL 170
Query 133 MESELVIGAVIIRGHLRMAGHSL-GRCDIKDLPKEITVA-TSRTLSYYKLGASQRVGTDS 190
+ ++ G+L G + G +I +LPK + VA SRT+ Y +G + + +
Sbjct 171 EGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSRTIVYTLVGKQLKASSAT 230
Query 191 GFAAYNRYRIGNYKLN--TDHAGSNDNIALLV 220
G+A Y + + G+Y + TD ++ + +V
Sbjct 231 GWAYYVKSKAGDYSTDARTDTLSEHEKLLHMV 262
>sp|P33464|VME1_CVPR8 Membrane protein OS=Porcine respiratory
coronavirus (strain 86/137004 / isolate British) OX=33736 GN=M
PE=3 SV=1
Length=262
Score = 108 bits (270), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/212 (33%), Positives = 115/212 (54%), Gaps = 7/212 (3%)
Query 16 LEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLAAV--YRIN 73
L WN + + +I +LQ+ + F+Y IK++ +WLLWP+ LA + A Y+++
Sbjct 51 LANWNFSWSIILIIFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVS 110
Query 74 -WVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTIVTRPL 132
+V G +IA A + ++W+ YFV S +L+ RT+S WSFNPETN +L V G PL
Sbjct 111 RYVMFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALGRSYVLPL 170
Query 133 MESELVIGAVIIRGHLRMAGHSL-GRCDIKDLPKEITVA-TSRTLSYYKLGASQRVGTDS 190
+ ++ G+L G + G I +LPK + VA SRT+ Y +G + + +
Sbjct 171 EGVPTGVTLTLLSGNLYAEGFKIAGGMTIDNLPKYVMVALPSRTIVYTLVGKKLKASSAT 230
Query 191 GFAAYNRYRIGNY--KLNTDHAGSNDNIALLV 220
G+A Y + + G+Y + TD+ + + +V
Sbjct 231 GWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV 262
>sp|P04135|VME1_CVPPU Membrane protein OS=Porcine transmissible
gastroenteritis coronavirus (strain Purdue) OX=11151 GN=M
PE=1 SV=2
Length=262
Score = 108 bits (270), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/212 (33%), Positives = 115/212 (54%), Gaps = 7/212 (3%)
Query 16 LEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLAAV--YRIN 73
L WN + + +I +LQ+ + F+Y IK++ +WLLWPV LA + A Y+++
Sbjct 51 LANWNFSWSIILIVFITVLQYGRPQFSWFVYGIKMLIMWLLWPVVLALTIFNAYSEYQVS 110
Query 74 -WVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTIVTRPL 132
+V G +IA A + ++W+ YFV S +L+ RT+S WSFNPET +L V G PL
Sbjct 111 RYVMFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETKAILCVSALGRSYVLPL 170
Query 133 MESELVIGAVIIRGHLRMAGHSL-GRCDIKDLPKEITVA-TSRTLSYYKLGASQRVGTDS 190
+ ++ G+L G + G +I +LPK + VA SRT+ Y +G + + +
Sbjct 171 EGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSRTIVYTLVGKKLKASSAT 230
Query 191 GFAAYNRYRIGNY--KLNTDHAGSNDNIALLV 220
G+A Y + + G+Y + TD+ + + +V
Sbjct 231 GWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV 262
>sp|P25878|VME1_FIPV Membrane protein OS=Feline coronavirus (strain
FIPV WSU-79/1146) OX=33734 GN=M PE=1 SV=1
Length=262
Score = 108 bits (269), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 116/212 (55%), Gaps = 7/212 (3%)
Query 16 LEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLAAV--YRIN 73
L WN + + +I +LQ+ + +Y IK++ +WLLWP+ LA + A Y+++
Sbjct 51 LANWNFSWSVILIVFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVS 110
Query 74 -WVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTIVTRPL 132
+V G ++A A + +W+ YFV S +L+ RT+S WSFNPETN +L V G PL
Sbjct 111 RYVMFGFSVAGAVVTFALWMMYFVRSVQLYRRTKSWWSFNPETNAILCVNALGRSYVLPL 170
Query 133 MESELVIGAVIIRGHLRMAGHSL-GRCDIKDLPKEITVAT-SRTLSYYKLGASQRVGTDS 190
+ + ++ G+L G + G I+ LPK + +AT SRT+ Y +G + T +
Sbjct 171 DGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSRTIVYTLVGKQLKATTAT 230
Query 191 GFAAYNRYRIGNY--KLNTDHAGSNDNIALLV 220
G+A Y + + G+Y + TD+ ++ + +V
Sbjct 231 GWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV 262
>sp|P36299|VME1_CVCAI Membrane protein OS=Canine coronavirus (strain
Insavc-1) OX=36391 GN=M PE=3 SV=1
Length=262
Score = 103 bits (257), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 115/212 (54%), Gaps = 7/212 (3%)
Query 16 LEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLAAV--YRIN 73
L WN + + +I +LQ+ + F+ IK++ +WLLWP+ LA + A YR++
Sbjct 51 LANWNFSWSVILIIFITVLQYGRPQFSWFVCGIKMLIMWLLWPIVLALTIFNAYLEYRVS 110
Query 74 -WVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTIVTRPL 132
+V G ++A A + ++W+ YFV S +L+ RT+S WSFNPET+ +L V G PL
Sbjct 111 RYVMFGFSVAGATVTFILWIMYFVRSIQLYRRTKSWWSFNPETSAILCVSALGRSYVLPL 170
Query 133 MESELVIGAVIIRGHLRMAGHSL-GRCDIKDLPKEITVATS-RTLSYYKLGASQRVGTDS 190
+ ++ G+L G + G +I +LPK + VA RT+ Y +G + + +
Sbjct 171 EGVPTGVTLTLLSGNLCAEGFKIAGGMNIDNLPKYVMVALPVRTIVYTLVGKKLKASSAT 230
Query 191 GFAAYNRYRIGNYKLN--TDHAGSNDNIALLV 220
G+A Y + + G+Y + TD+ ++ + +V
Sbjct 231 GWAYYVKSKAGDYSTDARTDNLSEHEKLLHMV 262
>sp|P15422|VME1_CVH22 Membrane protein OS=Human coronavirus 229E
OX=11137 GN=M PE=3 SV=3
Length=225
Score = 83.2 bits (204), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/193 (32%), Positives = 101/193 (52%), Gaps = 4/193 (2%)
Query 16 LEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTL--ACFVLAAVYRIN 73
L+ WN + +I++LQF + +R Y +K++ LWLLWP+ L + F A + N
Sbjct 14 LKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVLWLLWPLVLALSIFDTWANWDSN 73
Query 74 WVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTIVTRPLM 133
W + MA +MW+ YF SFRLF R R+ W++NPE N + + G +P+
Sbjct 74 WAFVAFSFFMAVSTLVMWVMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQ 133
Query 134 ESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVAT-SRTLSYYKLGASQRVGTDSG 191
++ I ++ G L + GH L + +LP+ +TVA S T+ Y ++G S +G
Sbjct 134 QAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNSTG 193
Query 192 FAAYNRYRIGNYK 204
+ Y R + G++
Sbjct 194 WVFYVRVKHGDFS 206
>sp|H6WS94|PDR1_PETHY Pleiotropic drug resistance protein 1 OS=Petunia
hybrida OX=4102 GN=PDR1 PE=2 SV=1
Length=1452
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/81 (25%), Positives = 36/81 (44%), Gaps = 7/81 (9%)
Query 40 NRNRFLYIIKLVFLWLLWPVTLACFVLAAVYRINWVTGGI-------AIAMACIVGLMWL 92
RN F+YI K++ L L+ +T+ F+ ++R + G + A+ M G L
Sbjct 517 KRNSFVYIFKMIQLTLMASITMTLFLPTEMHRNTTIDGAVFLGALFYALIMIMFNGFSEL 576
Query 93 SYFVASFRLFARTRSMWSFNP 113
+ + F + R + F P
Sbjct 577 ALSIMKLPSFYKHRDLLFFPP 597
>sp|H6WS93|PDR1_PETAX Pleiotropic drug resistance protein 1 OS=Petunia
axillaris OX=33119 GN=PDR1 PE=2 SV=1
Length=1452
Score = 32.0 bits (71), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/81 (25%), Positives = 36/81 (44%), Gaps = 7/81 (9%)
Query 40 NRNRFLYIIKLVFLWLLWPVTLACFVLAAVYRINWVTGGI-------AIAMACIVGLMWL 92
RN F+YI K++ L L+ +T+ F+ ++R + G + A+ M G L
Sbjct 517 KRNSFVYIFKMIQLTLMASITMTLFLRTEMHRNTTIDGAVFLGALFYALIMIMFNGFSEL 576
Query 93 SYFVASFRLFARTRSMWSFNP 113
+ + F + R + F P
Sbjct 577 ALSIMKLPSFYKHRDLLFFPP 597
>sp|Q7WTR3|MDTK_ERWAM Multidrug resistance protein MdtK OS=Erwinia
amylovora OX=552 GN=mdtK PE=3 SV=1
Length=457
Score = 31.2 bits (69), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 8/74 (11%)
Query 74 WVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTIVTRPLM 133
W GI I MACI L F +FR R +++ +PE I + L L
Sbjct 316 WTAQGIGICMACITAL-----FTIAFR--ERIAQLYADDPEV-ITMAAQLMLLAAVYQLS 367
Query 134 ESELVIGAVIIRGH 147
+S VIG+ ++RG+
Sbjct 368 DSVQVIGSGVLRGY 381
>sp|C5BPV9|IF2_TERTT Translation initiation factor IF-2 OS=Teredinibacter
turnerae (strain ATCC 39867 / T7901) OX=377629 GN=infB
PE=3 SV=1
Length=940
Score = 31.2 bits (69), Expect = 9.4, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query 114 ETNILLNVPLRGTIVT------RPLMESELVIGAVIIRGHLRMAGHSLGR 157
E + +NVP RG ++ R ++ + LV G + RG + +AG S GR
Sbjct 608 ELSAPVNVPARGVVIESRMDKGRGVVATVLVQGGELKRGDIMLAGQSFGR 657
Lambda K H a alpha
0.328 0.140 0.440 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 15146090536
Results from round 2
Query= sp|P59596|VME1_SARS Membrane protein OS=Severe acute respiratory
syndrome coronavirus OX=694009 GN=M PE=1 SV=1
Length=221
Score E
Sequences producing significant alignments: (Bits) Value
Sequences used in model and found again:
sp|Q3LZX9|VME1_BCHK3 Membrane protein OS=Bat coronavirus HKU3 OX=... 291 8e-100
sp|P59596|VME1_SARS Membrane protein OS=Severe acute respiratory ... 291 1e-99
sp|Q3I5J2|VME1_BCRP3 Membrane protein OS=Bat coronavirus Rp3/2004... 290 3e-99
sp|Q0Q472|VME1_BC279 Membrane protein OS=Bat coronavirus 279/2005... 290 3e-99
sp|P0DTC5|VME1_SARS2 Membrane protein OS=Severe acute respiratory... 284 1e-96
sp|Q0Q4E7|VME1_BC133 Membrane protein OS=Bat coronavirus 133/2005... 273 3e-92
sp|A3EXA0|VME1_BCHK4 Membrane protein OS=Bat coronavirus HKU4 OX=... 271 6e-92
sp|A3EXD6|VME1_BCHK5 Membrane protein OS=Bat coronavirus HKU5 OX=... 266 8e-90
sp|Q8BB24|VME1_CVP67 Membrane protein OS=Porcine hemagglutinating... 266 2e-89
sp|Q9JEB4|VME1_CVM2 Membrane protein OS=Murine coronavirus (strai... 264 7e-89
sp|Q8JSP5|VME1_CVPIA Membrane protein OS=Porcine hemagglutinating... 264 1e-88
sp|K9N7A1|VME1_MERS1 Membrane protein OS=Middle East respiratory ... 263 1e-88
sp|P69600|VME1_CVBOK Membrane protein OS=Bovine coronavirus (stra... 262 6e-88
sp|P69599|VME1_CVBLS Membrane protein OS=Bovine coronavirus (stra... 262 6e-88
sp|Q8V433|VME1_CVBLU Membrane protein OS=Bovine coronavirus (stra... 261 1e-87
sp|Q91A23|VME1_CVBEN Membrane protein OS=Bovine coronavirus (stra... 261 1e-87
sp|A3EXG9|VME1_BCHK9 Membrane protein OS=Bat coronavirus HKU9 OX=... 257 5e-86
sp|Q5MQC7|VME1_CVHN1 Membrane protein OS=Human coronavirus HKU1 (... 255 2e-85
sp|P33464|VME1_CVPR8 Membrane protein OS=Porcine respiratory coro... 252 9e-84
sp|P03415|VME1_CVMA5 Membrane protein OS=Murine coronavirus (stra... 250 2e-83
sp|P24412|VME1_CVPRM Membrane protein OS=Porcine respiratory coro... 251 3e-83
sp|P69705|VME1_CVBQ Membrane protein OS=Bovine coronavirus (strai... 248 1e-82
sp|P69704|VME1_CVBM Membrane protein OS=Bovine coronavirus (strai... 248 1e-82
sp|P69703|VME1_CVBF Membrane protein OS=Bovine coronavirus (strai... 248 1e-82
sp|Q9QAR9|VME1_CVBLY Membrane protein OS=Bovine coronavirus (stra... 248 1e-82
sp|P04135|VME1_CVPPU Membrane protein OS=Porcine transmissible ga... 249 2e-82
sp|P59771|VME1_PEDV7 Membrane protein OS=Porcine epidemic diarrhe... 247 3e-82
sp|P08549|VME1_CVMJH Membrane protein OS=Murine coronavirus (stra... 247 4e-82
sp|P09175|VME1_CVPFS Membrane protein OS=Porcine transmissible ga... 248 5e-82
sp|P26021|VME1_CVTKE Membrane protein OS=Turkey enteric coronavir... 246 7e-82
sp|P25878|VME1_FIPV Membrane protein OS=Feline coronavirus (strai... 247 9e-82
sp|Q7T6S9|VME1_CVCBG Membrane protein OS=Canine coronavirus (stra... 246 2e-81
sp|Q9IKC7|VME1_CVRSD Membrane protein OS=Rat coronavirus (strain ... 243 1e-80
sp|Q9WCD1|VME1_CVRNJ Membrane protein (Fragment) OS=Rat coronavir... 242 1e-80
sp|Q0ZME4|VME1_CVHN5 Membrane protein OS=Human coronavirus HKU1 (... 241 5e-80
sp|Q01455|VME1_CVHOC Membrane protein OS=Human coronavirus OC43 O... 242 5e-80
sp|Q14EA7|VME1_CVHN2 Membrane protein OS=Human coronavirus HKU1 (... 241 8e-80
sp|Q6Q1R9|VME1_CVHNL Membrane protein OS=Human coronavirus NL63 O... 241 8e-80
sp|Q0Q463|VME1_BC512 Membrane protein OS=Bat coronavirus 512/2005... 241 9e-80
sp|P36299|VME1_CVCAI Membrane protein OS=Canine coronavirus (stra... 240 5e-79
sp|P59770|VME1_PEDVB Membrane protein OS=Porcine epidemic diarrhe... 235 2e-77
sp|Q910E2|VME1_IBVG Membrane protein OS=Avian infectious bronchit... 231 9e-76
sp|P69606|VME1_IBVM Membrane protein OS=Avian infectious bronchit... 226 6e-74
sp|P69607|VME1_IBVH5 Membrane protein OS=Avian infectious bronchi... 226 6e-74
sp|P69604|VME1_IBVH1 Membrane protein OS=Avian infectious bronchi... 226 1e-73
sp|P69603|VME1_IBVD1 Membrane protein OS=Avian infectious bronchi... 226 1e-73
sp|P69605|VME1_IBV41 Membrane protein OS=Avian infectious bronchi... 226 1e-73
sp|Q9J3N8|VME1_IBVDE Membrane protein OS=Avian infectious bronchi... 226 1e-73
sp|P05136|VME1_IBV6 Membrane protein OS=Avian infectious bronchit... 225 1e-73
sp|P11222|VME1_IBVB2 Membrane protein OS=Avian infectious bronchi... 224 5e-73
sp|P69602|VME1_IBVBC Membrane protein OS=Avian infectious bronchi... 223 8e-73
sp|P69601|VME1_IBVB Membrane protein OS=Avian infectious bronchit... 223 8e-73
sp|Q91QS9|VME1_IBVBU Membrane protein OS=Avian infectious bronchi... 222 2e-72
sp|P12649|VME1_IBVK Membrane protein OS=Avian infectious bronchit... 222 3e-72
sp|P15422|VME1_CVH22 Membrane protein OS=Human coronavirus 229E O... 203 6e-65
Sequences not found previously or not previously below threshold:
sp|F4JT80|RPP2B_ARATH Disease resistance protein RPP2B OS=Arabido... 37.6 0.087
sp|Q9FLT4|AB10A_ARATH ABC transporter A family member 10 OS=Arabi... 32.6 3.0
sp|A8J6J0|SULT2_CHLRE Proton/sulfate cotransporter 2 OS=Chlamydom... 31.9 5.0
sp|B2TI04|MURC_CLOBB UDP-N-acetylmuramate--L-alanine ligase OS=Cl... 31.9 5.1
>sp|Q3LZX9|VME1_BCHK3 Membrane protein OS=Bat coronavirus HKU3
OX=442736 GN=M PE=3 SV=1
Length=221
Score = 291 bits (746), Expect = 8e-100, Method: Composition-based stats.
Identities = 218/221 (99%), Positives = 221/221 (100%), Gaps = 0/221 (0%)
Query 1 MADNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVT 60
MADNGTITVEELKQLLEQWNLVIGF+FLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVT
Sbjct 1 MADNGTITVEELKQLLEQWNLVIGFIFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVT 60
Query 61 LACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLN 120
LACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLN
Sbjct 61 LACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLN 120
Query 121 VPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL 180
VPLRGTI+TRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL
Sbjct 121 VPLRGTILTRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL 180
Query 181 GASQRVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALLVQ 221
GASQRVGTDSGFAAYNRYRIGNYKLNTDH+GSNDNIALLVQ
Sbjct 181 GASQRVGTDSGFAAYNRYRIGNYKLNTDHSGSNDNIALLVQ 221
>sp|P59596|VME1_SARS Membrane protein OS=Severe acute respiratory
syndrome coronavirus OX=694009 GN=M PE=1 SV=1
Length=221
Score = 291 bits (745), Expect = 1e-99, Method: Composition-based stats.
Identities = 221/221 (100%), Positives = 221/221 (100%), Gaps = 0/221 (0%)
Query 1 MADNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVT 60
MADNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVT
Sbjct 1 MADNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVT 60
Query 61 LACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLN 120
LACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLN
Sbjct 61 LACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLN 120
Query 121 VPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL 180
VPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL
Sbjct 121 VPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL 180
Query 181 GASQRVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALLVQ 221
GASQRVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALLVQ
Sbjct 181 GASQRVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALLVQ 221
>sp|Q3I5J2|VME1_BCRP3 Membrane protein OS=Bat coronavirus Rp3/2004
OX=349344 GN=M PE=3 SV=1
Length=221
Score = 290 bits (742), Expect = 3e-99, Method: Composition-based stats.
Identities = 215/221 (97%), Positives = 221/221 (100%), Gaps = 0/221 (0%)
Query 1 MADNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVT 60
MA+NGTI+VEELK+LLEQWNLVIGF+FLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVT
Sbjct 1 MAENGTISVEELKRLLEQWNLVIGFIFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVT 60
Query 61 LACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLN 120
LACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLN
Sbjct 61 LACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLN 120
Query 121 VPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL 180
VPLRGTI+TRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL
Sbjct 121 VPLRGTILTRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL 180
Query 181 GASQRVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALLVQ 221
GASQRVGTDSGFAAYNRYRIGNYKLNTDH+GSNDNIALLVQ
Sbjct 181 GASQRVGTDSGFAAYNRYRIGNYKLNTDHSGSNDNIALLVQ 221
>sp|Q0Q472|VME1_BC279 Membrane protein OS=Bat coronavirus 279/2005
OX=389167 GN=M PE=3 SV=1
Length=221
Score = 290 bits (742), Expect = 3e-99, Method: Composition-based stats.
Identities = 215/221 (97%), Positives = 219/221 (99%), Gaps = 0/221 (0%)
Query 1 MADNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVT 60
M DNGTITVEELKQLLEQWNLVIGF+FLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVT
Sbjct 1 MTDNGTITVEELKQLLEQWNLVIGFIFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVT 60
Query 61 LACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLN 120
LACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLN
Sbjct 61 LACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLN 120
Query 121 VPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL 180
VPLRGTI+TRPL+ESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL
Sbjct 121 VPLRGTILTRPLLESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL 180
Query 181 GASQRVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALLVQ 221
GASQRVG DSGFAAYNRYRIGNYKLNTDH+GSNDNIALLVQ
Sbjct 181 GASQRVGNDSGFAAYNRYRIGNYKLNTDHSGSNDNIALLVQ 221
>sp|P0DTC5|VME1_SARS2 Membrane protein OS=Severe acute respiratory
syndrome coronavirus 2 OX=2697049 GN=M PE=1 SV=1
Length=222
Score = 284 bits (726), Expect = 1e-96, Method: Composition-based stats.
Identities = 198/219 (90%), Positives = 211/219 (96%), Gaps = 0/219 (0%)
Query 3 DNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLA 62
NGTITVEELK+LLEQWNLVIGFLFL WI LLQFAY+NRNRFLYIIKL+FLWLLWPVTLA
Sbjct 4 SNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLA 63
Query 63 CFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVP 122
CFVLAAVYRINW+TGGIAIAMAC+VGLMWLSYF+ASFRLFARTRSMWSFNPETNILLNVP
Sbjct 64 CFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVP 123
Query 123 LRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKLGA 182
L GTI+TRPL+ESELVIGAVI+RGHLR+AGH LGRCDIKDLPKEITVATSRTLSYYKLGA
Sbjct 124 LHGTILTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLGA 183
Query 183 SQRVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALLVQ 221
SQRV DSGFAAY+RYRIGNYKLNTDH+ S+DNIALLVQ
Sbjct 184 SQRVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALLVQ 222
>sp|Q0Q4E7|VME1_BC133 Membrane protein OS=Bat coronavirus 133/2005
OX=389230 GN=M PE=3 SV=1
Length=219
Score = 273 bits (697), Expect = 3e-92, Method: Composition-based stats.
Identities = 93/207 (45%), Positives = 133/207 (64%), Gaps = 0/207 (0%)
Query 1 MADNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVT 60
M+ NG++T +E+ +++ WN +FL ++LQ+ Y +R+ +Y+ K+ LWLLWP +
Sbjct 1 MSSNGSLTKDEVVNIIKDWNFSWSIIFLLITIVLQYGYPSRSMMVYVFKMFILWLLWPAS 60
Query 61 LACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLN 120
+A + +A+Y I+ + I+ +A I +MWL+YFV S RLF RT S WSFNPE+N LLN
Sbjct 61 MALSIFSAIYPISLASQIISGILAAICAVMWLAYFVQSIRLFMRTGSWWSFNPESNCLLN 120
Query 121 VPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL 180
VP+ GT V RPL+E + AV+ GHL+MAG GRCD LP EITVA L K+
Sbjct 121 VPIGGTTVVRPLVEDSTSVTAVVNDGHLKMAGMHFGRCDYDRLPMEITVAKPSVLIALKM 180
Query 181 GASQRVGTDSGFAAYNRYRIGNYKLNT 207
Q GT+SG A ++RY+ GNY+ T
Sbjct 181 VKRQSYGTNSGVAIFHRYKAGNYRRPT 207
>sp|A3EXA0|VME1_BCHK4 Membrane protein OS=Bat coronavirus HKU4
OX=694007 GN=M PE=3 SV=1
Length=219
Score = 271 bits (694), Expect = 6e-92, Method: Composition-based stats.
Identities = 93/207 (45%), Positives = 133/207 (64%), Gaps = 0/207 (0%)
Query 1 MADNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVT 60
M+ NG++T +E+ +++ WN +FL ++LQ+ Y +R+ +Y+ K+ LWLLWP +
Sbjct 1 MSSNGSLTKDEVVNIIKDWNFSWSIIFLLITIVLQYGYPSRSMMVYVFKMFILWLLWPAS 60
Query 61 LACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLN 120
+A + +A+Y I+ + I+ +A I +MWL+YFV S RLF RT S WSFNPE+N LLN
Sbjct 61 MALSIFSAIYPISLSSQIISGILAAICAVMWLAYFVQSIRLFMRTGSWWSFNPESNCLLN 120
Query 121 VPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL 180
VP+ GT V RPL+E + AV+ GHL+MAG GRCD LP EITVA L K+
Sbjct 121 VPIGGTTVVRPLVEDSTSVTAVVNDGHLKMAGMHFGRCDYDRLPMEITVAKPSVLIALKM 180
Query 181 GASQRVGTDSGFAAYNRYRIGNYKLNT 207
Q GT+SG A ++RY+ GNY+ T
Sbjct 181 VKRQSYGTNSGVAIFHRYKAGNYRRPT 207
>sp|A3EXD6|VME1_BCHK5 Membrane protein OS=Bat coronavirus HKU5
OX=694008 GN=M PE=1 SV=1
Length=220
Score = 266 bits (680), Expect = 8e-90, Method: Composition-based stats.
Identities = 91/205 (44%), Positives = 130/205 (63%), Gaps = 0/205 (0%)
Query 2 ADNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTL 61
+ N T++ +E+ +L++ WN +FL ++LQ+ Y +R+ F+Y+IK+ LWLLWP ++
Sbjct 3 SSNVTLSNDEVLRLVKDWNFTWSVVFLLITIVLQYGYPSRSMFVYVIKMFVLWLLWPASM 62
Query 62 ACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNV 121
A + AVY I+ + I+ +A MW+SYFV S RLF RT S WSFNPE+N LLNV
Sbjct 63 ALSIFCAVYPIDLASQIISGILAATSCAMWISYFVQSIRLFMRTGSWWSFNPESNCLLNV 122
Query 122 PLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKLG 181
P+ GT V RPL+E + AV+ G+L+MAG G CD + LP E+TVA L K+
Sbjct 123 PIGGTTVVRPLVEDSTSVTAVVTDGYLKMAGMHFGACDFQRLPSEVTVAKPNVLIALKMI 182
Query 182 ASQRVGTDSGFAAYNRYRIGNYKLN 206
Q GT+SG A Y+RY+ GNY+
Sbjct 183 KRQAYGTNSGVAIYHRYKAGNYRRP 207
>sp|Q8BB24|VME1_CVP67 Membrane protein OS=Porcine hemagglutinating
encephalomyelitis virus (strain 67N) OX=230237 GN=M PE=3
SV=1
Length=230
Score = 266 bits (679), Expect = 2e-89, Method: Composition-based stats.
Identities = 91/215 (42%), Positives = 133/215 (62%), Gaps = 1/215 (0%)
Query 6 TITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFV 65
+ T +E + L++WN +G + L ++LQF Y++R+ F+Y+IK+V LWL+WP+T+ +
Sbjct 12 SWTADEAIKFLKEWNFSLGIIVLFITIILQFGYTSRSMFVYVIKMVILWLMWPLTIILTI 71
Query 66 LAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRG 125
VY +N V G +I + +MW+ YFV S RLF RT S WSFNPETN L+ + ++G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWVVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 126 TIVTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQ 184
+ RP++E + A IIRGHL + G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTATIIRGHLYIQGIKLGTGYSLSDLPAYVTVAKVTHLCTYKRGFLD 191
Query 185 RVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALL 219
R+G SGFA Y + ++GNY+L + H GS + ALL
Sbjct 192 RIGDTSGFAVYVKSKVGNYRLPSTHKGSGMDTALL 226
>sp|Q9JEB4|VME1_CVM2 Membrane protein OS=Murine coronavirus (strain
2) OX=76344 GN=M PE=1 SV=1
Length=228
Score = 264 bits (675), Expect = 7e-89, Method: Composition-based stats.
Identities = 85/214 (40%), Positives = 127/214 (59%), Gaps = 1/214 (0%)
Query 8 TVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLA 67
T +E + L++WN +G + L ++LQF Y++R+ F+Y++K++ LWL+WP+T+ +
Sbjct 15 TADEAIRFLKEWNFSLGIILLFVTIILQFGYTSRSMFVYVVKMILLWLMWPLTIVLCIFN 74
Query 68 AVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTI 127
VY +N V G +I + +MW+ YFV S RLF RT S WSFNPETN L+ ++GT+
Sbjct 75 CVYALNNVYLGFSIVFTIVSIIMWIMYFVNSIRLFIRTGSWWSFNPETNNLMCTDMKGTV 134
Query 128 VTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQRV 186
RP++E + A IIRGHL M G LG + DLP +TVA L YK +V
Sbjct 135 YVRPIIEDYHTLTATIIRGHLYMQGVKLGTGFSLSDLPAYVTVAKVSHLCTYKRAFLDKV 194
Query 187 GTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALLV 220
SGFA Y + ++GNY+L ++ D L +
Sbjct 195 DGVSGFAVYVKSKVGNYRLPSNKPSGMDTALLRI 228
>sp|Q8JSP5|VME1_CVPIA Membrane protein OS=Porcine hemagglutinating
encephalomyelitis virus (strain IAF-404) OX=230236 GN=M
PE=3 SV=1
Length=230
Score = 264 bits (674), Expect = 1e-88, Method: Composition-based stats.
Identities = 89/215 (41%), Positives = 132/215 (61%), Gaps = 1/215 (0%)
Query 6 TITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFV 65
+ T +E + L++WN +G + L ++LQF Y++R+ F+Y++K+V LW +WP+T+ +
Sbjct 12 SWTADEAIKFLKEWNFSLGIIVLFITIILQFGYTSRSMFVYVVKMVILWFMWPLTIILTI 71
Query 66 LAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRG 125
VY +N V G +I + +MW+ YFV S RLF RT S WSFNPETN L+ + ++G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWVVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 126 TIVTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQ 184
+ RP++E + A IIRGHL + G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTATIIRGHLYIQGIKLGTGYSLSDLPAYVTVAKVTHLCTYKRGFLD 191
Query 185 RVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALL 219
R+G SGFA Y + ++GNY+L + H GS + ALL
Sbjct 192 RIGDTSGFAVYVKSKVGNYRLPSTHKGSGMDTALL 226
>sp|K9N7A1|VME1_MERS1 Membrane protein OS=Middle East respiratory
syndrome-related coronavirus (isolate United Kingdom/H123990006/2012)
OX=1263720 GN=M PE=3 SV=1
Length=219
Score = 263 bits (672), Expect = 1e-88, Method: Composition-based stats.
Identities = 89/206 (43%), Positives = 127/206 (62%), Gaps = 0/206 (0%)
Query 1 MADNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVT 60
M++ +T ++ +++ WN +FL ++LQ+ Y +R+ +Y+ K+ LWLLWP +
Sbjct 1 MSNMTQLTEAQIIAIIKDWNFAWSLIFLLITIVLQYGYPSRSMTVYVFKMFVLWLLWPSS 60
Query 61 LACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLN 120
+A + +AVY I+ + I+ +A + +MW+SYFV S RLF RT S WSFNPETN LLN
Sbjct 61 MALSIFSAVYPIDLASQIISGIVAAVSAMMWISYFVQSIRLFMRTGSWWSFNPETNCLLN 120
Query 121 VPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL 180
VP GT V RPL+E + AV+ GHL+MAG G CD LP E+TVA L K+
Sbjct 121 VPFGGTTVVRPLVEDSTSVTAVVTNGHLKMAGMHFGACDYDRLPNEVTVAKPNVLIALKM 180
Query 181 GASQRVGTDSGFAAYNRYRIGNYKLN 206
Q GT+SG A Y+RY+ GNY+
Sbjct 181 VKRQSYGTNSGVAIYHRYKAGNYRSP 206
>sp|P69600|VME1_CVBOK Membrane protein OS=Bovine coronavirus (strain
OK-0514) OX=231432 GN=M PE=3 SV=1
Length=230
Score = 262 bits (669), Expect = 6e-88, Method: Composition-based stats.
Identities = 89/215 (41%), Positives = 131/215 (61%), Gaps = 1/215 (0%)
Query 6 TITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFV 65
T T +E + L++WN +G + L ++LQF Y++R+ F+Y+IK++ LWL+WP+T+ +
Sbjct 12 TWTADEAIKFLKEWNFSLGIILLFITVILQFGYTSRSMFVYVIKMIILWLMWPLTIILTI 71
Query 66 LAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRG 125
VY +N V G +I + +MW+ YFV S RLF RT S WSFNPETN L+ + ++G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 126 TIVTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQ 184
+ RP++E + IIRGHL M G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKRGFLD 191
Query 185 RVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALL 219
++G SGFA Y + ++GNY+L + GS + ALL
Sbjct 192 KIGDTSGFAVYVKSKVGNYRLPSTQKGSGMDTALL 226
>sp|P69599|VME1_CVBLS Membrane protein OS=Bovine coronavirus (strain
LSU-94LSS-051) OX=233261 GN=M PE=3 SV=1
Length=230
Score = 262 bits (669), Expect = 6e-88, Method: Composition-based stats.
Identities = 89/215 (41%), Positives = 131/215 (61%), Gaps = 1/215 (0%)
Query 6 TITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFV 65
T T +E + L++WN +G + L ++LQF Y++R+ F+Y+IK++ LWL+WP+T+ +
Sbjct 12 TWTADEAIKFLKEWNFSLGIILLFITVILQFGYTSRSMFVYVIKMIILWLMWPLTIILTI 71
Query 66 LAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRG 125
VY +N V G +I + +MW+ YFV S RLF RT S WSFNPETN L+ + ++G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 126 TIVTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQ 184
+ RP++E + IIRGHL M G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKRGFLD 191
Query 185 RVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALL 219
++G SGFA Y + ++GNY+L + GS + ALL
Sbjct 192 KIGDTSGFAVYVKSKVGNYRLPSTQKGSGMDTALL 226
>sp|Q8V433|VME1_CVBLU Membrane protein OS=Bovine coronavirus (strain
98TXSF-110-LUN) OX=233264 GN=M PE=3 SV=1
Length=230
Score = 261 bits (667), Expect = 1e-87, Method: Composition-based stats.
Identities = 89/215 (41%), Positives = 131/215 (61%), Gaps = 1/215 (0%)
Query 6 TITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFV 65
T T +E + L++WN +G + L ++LQF Y++R+ F+Y+IK++ LWL+WP+T+ +
Sbjct 12 TWTADEAIKFLKEWNFSLGIILLFITVILQFGYTSRSMFVYVIKMIILWLMWPLTIILTI 71
Query 66 LAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRG 125
VY +N V G +I + +MW+ YFV S RLF RT S WSFNPETN L+ + ++G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 126 TIVTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQ 184
+ RP++E + IIRGHL M G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKRGFLD 191
Query 185 RVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALL 219
++G SGFA Y + ++GNY+L + GS + ALL
Sbjct 192 KIGDTSGFAVYVKSKVGNYRLPSTQKGSGLDTALL 226
>sp|Q91A23|VME1_CVBEN Membrane protein OS=Bovine coronavirus (strain
98TXSF-110-ENT) OX=233262 GN=M PE=3 SV=1
Length=230
Score = 261 bits (666), Expect = 1e-87, Method: Composition-based stats.
Identities = 90/215 (42%), Positives = 131/215 (61%), Gaps = 1/215 (0%)
Query 6 TITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFV 65
T T +E + L++WN +G + L ++LQF Y++R+ F+Y+IK+V LWL+WP+T+ +
Sbjct 12 TWTADEAIKFLKEWNFSLGIILLFITVILQFGYTSRSMFVYVIKMVILWLMWPLTIILTI 71
Query 66 LAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRG 125
VY +N V G +I + +MW+ YFV S RLF RT S WSFNPETN L+ + ++G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 126 TIVTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQ 184
+ RP++E + IIRGHL M G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKRGFLD 191
Query 185 RVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALL 219
++G SGFA Y + ++GNY+L + GS + ALL
Sbjct 192 KIGDTSGFAVYVKSKVGNYRLPSTQKGSGLDTALL 226
>sp|A3EXG9|VME1_BCHK9 Membrane protein OS=Bat coronavirus HKU9
OX=694006 GN=M PE=3 SV=1
Length=222
Score = 257 bits (656), Expect = 5e-86, Method: Composition-based stats.
Identities = 97/223 (43%), Positives = 143/223 (64%), Gaps = 5/223 (2%)
Query 1 MADNGTITVE--ELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWP 58
M++N T TV E+ L+ WN + + L +LLQ+ Y +R + +++IK+ LWLLWP
Sbjct 1 MSNNCTNTVPRPEVIAALKDWNFAVSVILLFITVLLQWGYPSRCKPIWVIKMFILWLLWP 60
Query 59 VTLACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNIL 118
+++A V AA++ IN V G AIA ACI G+MWLSYF++SFRL RT S WSF PET++L
Sbjct 61 LSIAAAVFAAIHPINSVAFGFAIAFACISGIMWLSYFISSFRLLCRTGSAWSFMPETDML 120
Query 119 LNVPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYY 178
+N+PL G VTRP++ + +IIRG LR G +LGRCD D+P +T+A L +Y
Sbjct 121 INIPLLGRTVTRPIISDSPAVQFLIIRGELRFDGFTLGRCDPGDMPDIVTIARPNALHWY 180
Query 179 KLGASQRVGTDSGFAAYNRYRIGNYKL-NTDHAGSNDNIALLV 220
K ++ + T S Y +Y++GN+++ NT G D +A+ V
Sbjct 181 KRALTRNMYTRSAILVYIKYKVGNHRVQNTTEDG--DRLAMFV 221
>sp|Q5MQC7|VME1_CVHN1 Membrane protein OS=Human coronavirus HKU1
(isolate N1) OX=443239 GN=M PE=3 SV=1
Length=223
Score = 255 bits (652), Expect = 2e-85, Method: Composition-based stats.
Identities = 77/214 (36%), Positives = 123/214 (57%), Gaps = 1/214 (0%)
Query 6 TITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFV 65
T ++ L++WN +G + L ++LQF Y++R+ F+Y+IK++ LWL+WP+T+ +
Sbjct 8 QFTSDQAVTFLKEWNFSLGVILLFITIILQFGYTSRSMFVYLIKMIILWLMWPLTITLTI 67
Query 66 LAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRG 125
Y +N +I I ++W+ YFV S RLF RT S WSFNPETN L+ + ++G
Sbjct 68 FNCFYALNNAFLAFSIVFTIISIVIWILYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 127
Query 126 TIVTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQ 184
+ RP++E + A +IRGHL + G LG + DLP +TVA + L YK
Sbjct 128 KMFVRPVIEDYHTLTATVIRGHLYIQGVKLGTGYTLSDLPVYVTVAKVQVLCTYKRAFLD 187
Query 185 RVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIAL 218
++ +SGFA + + ++GNY+L + D L
Sbjct 188 KLDVNSGFAVFVKSKVGNYRLPSSKPSGMDTALL 221
>sp|P33464|VME1_CVPR8 Membrane protein OS=Porcine respiratory
coronavirus (strain 86/137004 / isolate British) OX=33736 GN=M
PE=3 SV=1
Length=262
Score = 252 bits (644), Expect = 9e-84, Method: Composition-based stats.
Identities = 70/217 (32%), Positives = 116/217 (53%), Gaps = 7/217 (3%)
Query 11 ELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLAAV- 69
+L L WN + + +I +LQ+ + F+Y IK++ +WLLWP+ LA + A
Sbjct 46 DLIWHLANWNFSWSIILIIFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYS 105
Query 70 -YRIN-WVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTI 127
Y+++ +V G +IA A + ++W+ YFV S +L+ RT+S WSFNPETN +L V G
Sbjct 106 EYQVSRYVMFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALGRS 165
Query 128 VTRPLMESELVIGAVIIRGHLRMAGHSL-GRCDIKDLPKEITVA-TSRTLSYYKLGASQR 185
PL + ++ G+L G + G I +LPK + VA SRT+ Y +G +
Sbjct 166 YVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMTIDNLPKYVMVALPSRTIVYTLVGKKLK 225
Query 186 VGTDSGFAAYNRYRIGNYK--LNTDHAGSNDNIALLV 220
+ +G+A Y + + G+Y TD+ + + +V
Sbjct 226 ASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV 262
>sp|P03415|VME1_CVMA5 Membrane protein OS=Murine coronavirus (strain
A59) OX=11142 GN=M PE=1 SV=1
Length=228
Score = 250 bits (639), Expect = 2e-83, Method: Composition-based stats.
Identities = 85/214 (40%), Positives = 128/214 (60%), Gaps = 1/214 (0%)
Query 8 TVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLA 67
T +E Q L++WN +G + L ++LQF Y++R+ F+Y++K++ LWL+WP+T+ +
Sbjct 15 TADEAVQFLKEWNFSLGIILLFITIILQFGYTSRSMFIYVVKMIILWLMWPLTIVLCIFN 74
Query 68 AVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTI 127
VY +N V G +I + ++W+ YFV S RLF RT S WSFNPETN L+ + ++GT+
Sbjct 75 CVYALNNVYLGFSIVFTIVSIVIWIMYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKGTV 134
Query 128 VTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQRV 186
RP++E + A IIRGHL M G LG + DLP +TVA L YK +V
Sbjct 135 YVRPIIEDYHTLTATIIRGHLYMQGVKLGTGFSLSDLPAYVTVAKVSHLCTYKRAFLDKV 194
Query 187 GTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALLV 220
SGFA Y + ++GNY+L ++ D L +
Sbjct 195 DGVSGFAVYVKSKVGNYRLPSNKPSGADTALLRI 228
>sp|P24412|VME1_CVPRM Membrane protein OS=Porcine respiratory
coronavirus (strain RM4) OX=11148 GN=M PE=3 SV=1
Length=262
Score = 251 bits (641), Expect = 3e-83, Method: Composition-based stats.
Identities = 71/217 (33%), Positives = 117/217 (54%), Gaps = 7/217 (3%)
Query 11 ELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLAAV- 69
+L LL WN + + +I +LQ+ + F+Y IK++ +WLLWP+ LA + A
Sbjct 46 DLIWLLANWNFSWSIILIIFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYS 105
Query 70 -YRIN-WVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTI 127
Y+++ +V G +IA A + ++W+ YFV S +L+ RT+S WSFNPETN +L V G
Sbjct 106 EYQVSRYVMFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALGRS 165
Query 128 VTRPLMESELVIGAVIIRGHLRMAGHSL-GRCDIKDLPKEITVA-TSRTLSYYKLGASQR 185
PL + ++ G+L G + G I +LPK + VA SRT+ Y +G +
Sbjct 166 YVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMTIDNLPKYVMVALPSRTIVYTLVGKKLK 225
Query 186 VGTDSGFAAYNRYRIGNYK--LNTDHAGSNDNIALLV 220
+ +G+A Y + + G+Y TD+ + + +V
Sbjct 226 ASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV 262
>sp|P69705|VME1_CVBQ Membrane protein OS=Bovine coronavirus (strain
Quebec) OX=11133 GN=M PE=3 SV=1
Length=230
Score = 248 bits (634), Expect = 1e-82, Method: Composition-based stats.
Identities = 89/215 (41%), Positives = 131/215 (61%), Gaps = 1/215 (0%)
Query 6 TITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFV 65
T T +E + L++WN +G + L ++LQF Y++R+ F+Y+IK++ LWL+WP+T+ +
Sbjct 12 TWTADEAIKFLKEWNFSLGIILLFITIILQFGYTSRSMFVYVIKMIILWLMWPLTIILTI 71
Query 66 LAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRG 125
VY +N V G +I + +MW+ YFV S RLF RT S WSFNPETN L+ + ++G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 126 TIVTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQ 184
+ RP++E + IIRGHL M G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKRGFLD 191
Query 185 RVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALL 219
++G SGFA Y + ++GNY+L + GS + ALL
Sbjct 192 KIGDTSGFAVYVKSKVGNYRLPSTQKGSGMDTALL 226
>sp|P69704|VME1_CVBM Membrane protein OS=Bovine coronavirus (strain
Mebus) OX=11132 GN=M PE=1 SV=1
Length=230
Score = 248 bits (634), Expect = 1e-82, Method: Composition-based stats.
Identities = 89/215 (41%), Positives = 131/215 (61%), Gaps = 1/215 (0%)
Query 6 TITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFV 65
T T +E + L++WN +G + L ++LQF Y++R+ F+Y+IK++ LWL+WP+T+ +
Sbjct 12 TWTADEAIKFLKEWNFSLGIILLFITIILQFGYTSRSMFVYVIKMIILWLMWPLTIILTI 71
Query 66 LAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRG 125
VY +N V G +I + +MW+ YFV S RLF RT S WSFNPETN L+ + ++G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 126 TIVTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQ 184
+ RP++E + IIRGHL M G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKRGFLD 191
Query 185 RVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALL 219
++G SGFA Y + ++GNY+L + GS + ALL
Sbjct 192 KIGDTSGFAVYVKSKVGNYRLPSTQKGSGMDTALL 226
>sp|P69703|VME1_CVBF Membrane protein OS=Bovine coronavirus (strain
F15) OX=11129 GN=M PE=3 SV=1
Length=230
Score = 248 bits (634), Expect = 1e-82, Method: Composition-based stats.
Identities = 89/215 (41%), Positives = 131/215 (61%), Gaps = 1/215 (0%)
Query 6 TITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFV 65
T T +E + L++WN +G + L ++LQF Y++R+ F+Y+IK++ LWL+WP+T+ +
Sbjct 12 TWTADEAIKFLKEWNFSLGIILLFITIILQFGYTSRSMFVYVIKMIILWLMWPLTIILTI 71
Query 66 LAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRG 125
VY +N V G +I + +MW+ YFV S RLF RT S WSFNPETN L+ + ++G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 126 TIVTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQ 184
+ RP++E + IIRGHL M G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKRGFLD 191
Query 185 RVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALL 219
++G SGFA Y + ++GNY+L + GS + ALL
Sbjct 192 KIGDTSGFAVYVKSKVGNYRLPSTQKGSGMDTALL 226
>sp|Q9QAR9|VME1_CVBLY Membrane protein OS=Bovine coronavirus (strain
LY-138) OX=11131 GN=M PE=3 SV=1
Length=230
Score = 248 bits (633), Expect = 1e-82, Method: Composition-based stats.
Identities = 90/215 (42%), Positives = 131/215 (61%), Gaps = 1/215 (0%)
Query 6 TITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFV 65
T T +E + L++WN +G + L ++LQF Y++R+ F+Y+IK++ LWL+WP+T+ +
Sbjct 12 TWTADEAIKFLKEWNFSLGIILLFITIILQFGYTSRSMFVYVIKMIILWLMWPLTIILTI 71
Query 66 LAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRG 125
VY +N V G +I + +MW+ YFV S RLF RT S WSFNPETN L+ + ++G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 126 TIVTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQ 184
+ RP++E + IIRGHL M G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKRGFLD 191
Query 185 RVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALL 219
R+G SGFA Y + ++GNY+L + GS + ALL
Sbjct 192 RIGDTSGFAVYVKSKVGNYRLPSTQKGSGMDTALL 226
>sp|P04135|VME1_CVPPU Membrane protein OS=Porcine transmissible
gastroenteritis coronavirus (strain Purdue) OX=11151 GN=M
PE=1 SV=2
Length=262
Score = 249 bits (636), Expect = 2e-82, Method: Composition-based stats.
Identities = 70/217 (32%), Positives = 116/217 (53%), Gaps = 7/217 (3%)
Query 11 ELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLAAV- 69
+L L WN + + +I +LQ+ + F+Y IK++ +WLLWPV LA + A
Sbjct 46 DLIWHLANWNFSWSIILIVFITVLQYGRPQFSWFVYGIKMLIMWLLWPVVLALTIFNAYS 105
Query 70 -YRIN-WVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTI 127
Y+++ +V G +IA A + ++W+ YFV S +L+ RT+S WSFNPET +L V G
Sbjct 106 EYQVSRYVMFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETKAILCVSALGRS 165
Query 128 VTRPLMESELVIGAVIIRGHLRMAGHSL-GRCDIKDLPKEITVA-TSRTLSYYKLGASQR 185
PL + ++ G+L G + G +I +LPK + VA SRT+ Y +G +
Sbjct 166 YVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSRTIVYTLVGKKLK 225
Query 186 VGTDSGFAAYNRYRIGNYK--LNTDHAGSNDNIALLV 220
+ +G+A Y + + G+Y TD+ + + +V
Sbjct 226 ASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV 262
>sp|P59771|VME1_PEDV7 Membrane protein OS=Porcine epidemic diarrhea
virus (strain CV777) OX=229032 GN=M PE=3 SV=1
Length=226
Score = 247 bits (631), Expect = 3e-82, Method: Composition-based stats.
Identities = 72/225 (32%), Positives = 122/225 (54%), Gaps = 7/225 (3%)
Query 3 DNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLA 62
NG+I V+E+ + L WN + +++LQ+ + + FLY +K+ LW+LWP+ LA
Sbjct 2 SNGSIPVDEVIEHLRNWNFTWNIILTILLVVLQYGHYKYSVFLYGVKMAILWILWPLVLA 61
Query 63 CFVL--AAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLN 120
+ A +++NWV +I MACI ++W+ YFV S RL+ RT S WSFNPET+ LL
Sbjct 62 LSLFDAWASFQVNWVFFAFSILMACITLMLWIMYFVNSIRLWRRTHSWWSFNPETDALLT 121
Query 121 VPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVAT-SRTLSYY 178
+ G V P++ + + ++ G L + G+ + + LP +TVA + T+ Y
Sbjct 122 TSVMGRQVCIPVLGAPTGVTLTLLSGTLFVEGYKVATGVQVSQLPNFVTVAKATTTIVYG 181
Query 179 KLGASQRVGTDSGFAAYNRYRIGNYKL---NTDHAGSNDNIALLV 220
++G S + +G+A Y R + G+Y + ++ + LV
Sbjct 182 RVGRSVNASSGTGWAFYVRSKHGDYSAVSNPSAVLTDSEKVLHLV 226
>sp|P08549|VME1_CVMJH Membrane protein OS=Murine coronavirus (strain
JHM) OX=11144 GN=M PE=1 SV=1
Length=228
Score = 247 bits (631), Expect = 4e-82, Method: Composition-based stats.
Identities = 84/214 (39%), Positives = 127/214 (59%), Gaps = 1/214 (0%)
Query 8 TVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLA 67
T +E Q L++WN +G + L ++LQF Y++R+ F+Y++K++ LWL+WP+ + +
Sbjct 15 TADEAVQFLKEWNFSLGIILLFITIILQFGYTSRSMFIYVVKMIILWLMWPLIIVLCMFN 74
Query 68 AVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTI 127
VY +N V G +I + +MW+ YFV S RLF RT S WSFNPETN L+ + ++GT+
Sbjct 75 CVYALNNVYLGFSIVFTIVSVVMWIMYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKGTV 134
Query 128 VTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQRV 186
RP++E + A IIRGH M G LG + DLP +TVA L YK +V
Sbjct 135 YVRPIIEDYHTLTATIIRGHFYMQGVKLGTGFSLSDLPAYVTVAKVSHLCTYKRAFLDKV 194
Query 187 GTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALLV 220
SGFA Y + ++GNY+L ++ D + L +
Sbjct 195 DGVSGFAVYVKSKVGNYRLPSNKPSGADTVLLRI 228
>sp|P09175|VME1_CVPFS Membrane protein OS=Porcine transmissible
gastroenteritis coronavirus (strain FS772/70) OX=11150 GN=M
PE=1 SV=1
Length=262
Score = 248 bits (633), Expect = 5e-82, Method: Composition-based stats.
Identities = 69/217 (32%), Positives = 117/217 (54%), Gaps = 7/217 (3%)
Query 11 ELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLAAV- 69
+L L WN + + +I +LQ+ + F+Y IK++ +WLLWP+ LA + A
Sbjct 46 DLIWHLANWNFSWSIILIIFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYS 105
Query 70 -YRIN-WVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTI 127
Y+++ +V G++IA A + ++W+ YFV S +L+ RT+S WSFNPE N +L V G
Sbjct 106 EYQVSRYVMFGVSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPEINAILCVSALGRS 165
Query 128 VTRPLMESELVIGAVIIRGHLRMAGHSL-GRCDIKDLPKEITVA-TSRTLSYYKLGASQR 185
PL + ++ G+L G + G +I +LPK + VA SRT+ Y +G +
Sbjct 166 YVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSRTIVYTLVGKKLK 225
Query 186 VGTDSGFAAYNRYRIGNYK--LNTDHAGSNDNIALLV 220
+ +G+A Y + + G+Y TD+ + + +V
Sbjct 226 ASSATGWAYYVKSKAGDYSTDARTDNLSEQEKLLHMV 262
>sp|P26021|VME1_CVTKE Membrane protein OS=Turkey enteric coronavirus
OX=11152 GN=M PE=3 SV=1
Length=230
Score = 246 bits (629), Expect = 7e-82, Method: Composition-based stats.
Identities = 88/215 (41%), Positives = 130/215 (60%), Gaps = 1/215 (0%)
Query 6 TITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFV 65
T T +E + L++WN +G + L ++LQF Y++R+ +Y+IK++ LWL+WP+T+ +
Sbjct 12 TWTADEAIKFLKEWNFSLGIILLFITIILQFGYTSRSMSVYVIKMIILWLMWPLTIILTI 71
Query 66 LAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRG 125
VY +N V G +I + +MW+ YFV S RLF RT S WSFNPETN L+ + ++G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 126 TIVTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQ 184
+ RP++E + IIRGHL M G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKRGFLD 191
Query 185 RVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALL 219
++G SGFA Y + ++GNY+L + GS + ALL
Sbjct 192 KIGDTSGFAVYVKSKVGNYRLPSTQKGSGMDTALL 226
>sp|P25878|VME1_FIPV Membrane protein OS=Feline coronavirus (strain
FIPV WSU-79/1146) OX=33734 GN=M PE=1 SV=1
Length=262
Score = 247 bits (631), Expect = 9e-82, Method: Composition-based stats.
Identities = 68/217 (31%), Positives = 116/217 (53%), Gaps = 7/217 (3%)
Query 11 ELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLAAV- 69
+L L WN + + +I +LQ+ + +Y IK++ +WLLWP+ LA + A
Sbjct 46 DLIWHLANWNFSWSVILIVFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYS 105
Query 70 -YRIN-WVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTI 127
Y+++ +V G ++A A + +W+ YFV S +L+ RT+S WSFNPETN +L V G
Sbjct 106 EYQVSRYVMFGFSVAGAVVTFALWMMYFVRSVQLYRRTKSWWSFNPETNAILCVNALGRS 165
Query 128 VTRPLMESELVIGAVIIRGHLRMAGHSL-GRCDIKDLPKEITVATS-RTLSYYKLGASQR 185
PL + + ++ G+L G + G I+ LPK + +AT RT+ Y +G +
Sbjct 166 YVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSRTIVYTLVGKQLK 225
Query 186 VGTDSGFAAYNRYRIGNYK--LNTDHAGSNDNIALLV 220
T +G+A Y + + G+Y TD+ ++ + +V
Sbjct 226 ATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV 262
>sp|Q7T6S9|VME1_CVCBG Membrane protein OS=Canine coronavirus (strain
BGF10) OX=441619 GN=M PE=3 SV=1
Length=262
Score = 246 bits (629), Expect = 2e-81, Method: Composition-based stats.
Identities = 68/217 (31%), Positives = 116/217 (53%), Gaps = 7/217 (3%)
Query 11 ELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLAAV- 69
+L L WN + + +I +LQ+ + F+Y +K++ +WLLWP+ LA + A
Sbjct 46 DLVWHLANWNFSWSVILIVFITVLQYGRPQFSWFVYGVKMLIMWLLWPIVLALTIFNAYS 105
Query 70 -YRIN-WVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTI 127
Y ++ +V G ++A A + ++W+ YFV S +L+ RT+S WSFNPETN +L V G
Sbjct 106 EYEVSRYVMFGFSVAGAIVTFILWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALGRS 165
Query 128 VTRPLMESELVIGAVIIRGHLRMAGHSL-GRCDIKDLPKEITVA-TSRTLSYYKLGASQR 185
PL + ++ G+L G + G +I +LPK + VA SRT+ Y +G +
Sbjct 166 YVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSRTIVYTLVGKQLK 225
Query 186 VGTDSGFAAYNRYRIGNYK--LNTDHAGSNDNIALLV 220
+ +G+A Y + + G+Y TD ++ + +V
Sbjct 226 ASSATGWAYYVKSKAGDYSTDARTDTLSEHEKLLHMV 262
>sp|Q9IKC7|VME1_CVRSD Membrane protein OS=Rat coronavirus (strain
681) OX=33740 GN=M PE=3 SV=1
Length=228
Score = 243 bits (621), Expect = 1e-80, Method: Composition-based stats.
Identities = 82/214 (38%), Positives = 127/214 (59%), Gaps = 1/214 (0%)
Query 8 TVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLA 67
T + + L++WN ++G + L ++LQF Y++R+ F+Y++K++ LWL+WP+T+ +
Sbjct 15 TADVAVRFLKEWNFLLGIILLFITIILQFGYTSRSMFIYVVKMIILWLMWPLTIVLCIFN 74
Query 68 AVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTI 127
VY +N V G +I + +MW+ YFV S RLF RT S WSFNPETN L+ + ++GT+
Sbjct 75 CVYALNNVYLGFSIVFTIVSIVMWIMYFVNSIRLFIRTGSWWSFNPETNNLMCIDVKGTV 134
Query 128 VTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQRV 186
RP++E + A +RGHL M G LG + DLP +TVA L YK +V
Sbjct 135 YVRPIIEDYHTLTATNVRGHLYMQGVKLGTGFSLSDLPAYVTVAKVSHLCTYKRAFLDKV 194
Query 187 GTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALLV 220
SGFA Y + ++GNY+L ++ D L +
Sbjct 195 DGVSGFAVYVKSKVGNYRLPSNKPSGADTALLRI 228
>sp|Q9WCD1|VME1_CVRNJ Membrane protein (Fragment) OS=Rat coronavirus
(strain NJ) OX=231433 GN=M PE=3 SV=1
Length=222
Score = 242 bits (619), Expect = 1e-80, Method: Composition-based stats.
Identities = 82/214 (38%), Positives = 127/214 (59%), Gaps = 1/214 (0%)
Query 8 TVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLA 67
T + + L++WN ++G + L ++LQF Y++R+ F+Y++K++ LWL+WP+T+ +
Sbjct 9 TADVAVRFLKEWNFLLGIILLFITIILQFGYTSRSMFIYVVKMIILWLMWPLTIVLCIFN 68
Query 68 AVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTI 127
VY +N V G +I + +MW+ YFV S RLF RT S WSFNPETN L+ + ++GT+
Sbjct 69 CVYALNNVYLGFSIVFTIVSIVMWIMYFVNSIRLFIRTGSWWSFNPETNNLMCIDVKGTV 128
Query 128 VTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQRV 186
RP++E + A +RGHL M G LG + DLP +TVA L YK +V
Sbjct 129 YVRPIIEDYHTLTATNVRGHLYMQGVKLGTGFSLSDLPAYVTVAKVSHLCTYKRAFLDKV 188
Query 187 GTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALLV 220
SGFA Y + ++GNY+L ++ D L +
Sbjct 189 DGVSGFAVYVKSKVGNYRLPSNKPSGVDTALLRI 222
>sp|Q0ZME4|VME1_CVHN5 Membrane protein OS=Human coronavirus HKU1
(isolate N5) OX=443241 GN=M PE=3 SV=1
Length=223
Score = 241 bits (616), Expect = 5e-80, Method: Composition-based stats.
Identities = 78/211 (37%), Positives = 126/211 (60%), Gaps = 1/211 (0%)
Query 9 VEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLAA 68
++ L++WN +G + L ++LQF Y++R+ F+Y+IK++ LWL+WP+T+ +
Sbjct 11 SDQAITFLKEWNFSLGVILLLITIILQFGYTSRSMFVYLIKMIILWLMWPLTIILTIFNC 70
Query 69 VYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTIV 128
Y +N V G++I I ++W+ YFV S RLF RT S WSFNPETN L+ + ++G +
Sbjct 71 FYALNNVFLGLSILFTIISIVIWILYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKGKMY 130
Query 129 TRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQRVG 187
RP++E + A +IRGHL + G LG + DLP +TVA + L YK ++
Sbjct 131 VRPVIEDYHTLTATVIRGHLYIQGVKLGTGYTLADLPVYVTVAKVQVLCTYKRAFLDKLD 190
Query 188 TDSGFAAYNRYRIGNYKLNTDHAGSNDNIAL 218
+SGFA + + ++GNY+L + + D L
Sbjct 191 VNSGFAVFVKSKVGNYRLPSSKSSGMDTALL 221
>sp|Q01455|VME1_CVHOC Membrane protein OS=Human coronavirus OC43
OX=31631 GN=M PE=1 SV=1
Length=230
Score = 242 bits (617), Expect = 5e-80, Method: Composition-based stats.
Identities = 88/213 (41%), Positives = 130/213 (61%), Gaps = 1/213 (0%)
Query 8 TVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLA 67
T +E + L++WN +G + L ++LQF Y++R+ F+Y+IK++ LWL+WP+T+ +
Sbjct 14 TADEAIKFLKEWNFSLGIILLFITIILQFGYTSRSMFVYVIKMIILWLMWPLTIILTIFN 73
Query 68 AVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTI 127
VY +N V G++I + +MW+ YFV S RLF RT S WSFNPETN L+ + ++GT+
Sbjct 74 CVYALNNVYLGLSIVFTIVAIIMWIVYFVNSIRLFIRTGSFWSFNPETNNLMCIDMKGTM 133
Query 128 VTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQRV 186
RP++E + IIRGHL + G LG DLP +TVA L YK G R+
Sbjct 134 YVRPIIEDYHTLTVTIIRGHLYIQGIKLGTGYSWADLPAYMTVAKVTHLCTYKRGFLDRI 193
Query 187 GTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALL 219
SGFA Y + ++GNY+L + GS + ALL
Sbjct 194 SDTSGFAVYVKSKVGNYRLPSTQKGSGMDTALL 226
>sp|Q14EA7|VME1_CVHN2 Membrane protein OS=Human coronavirus HKU1
(isolate N2) OX=443240 GN=M PE=3 SV=1
Length=223
Score = 241 bits (615), Expect = 8e-80, Method: Composition-based stats.
Identities = 77/211 (36%), Positives = 126/211 (60%), Gaps = 1/211 (0%)
Query 9 VEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLAA 68
++ L++WN +G + L ++LQF Y++R+ F+Y+IK++ LWL+WP+T+ +
Sbjct 11 SDQAITFLKEWNFSLGVILLLITIILQFGYTSRSMFVYLIKMIILWLMWPLTIILTIFNC 70
Query 69 VYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTIV 128
Y +N + G++I I ++W+ YFV S RLF RT S WSFNPETN L+ + ++G +
Sbjct 71 FYALNNIFLGLSILFTIISIVIWILYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKGKMY 130
Query 129 TRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKLGASQRVG 187
RP++E + A +IRGHL + G LG + DLP +TVA + L YK ++
Sbjct 131 VRPVIEDYHTLTATVIRGHLYIQGVKLGTGYTLADLPVYVTVAKVQVLCTYKRAFLDKLD 190
Query 188 TDSGFAAYNRYRIGNYKLNTDHAGSNDNIAL 218
+SGFA + + ++GNY+L + + D L
Sbjct 191 VNSGFAVFVKSKVGNYRLPSSKSSGMDTALL 221
>sp|Q6Q1R9|VME1_CVHNL Membrane protein OS=Human coronavirus NL63
OX=277944 GN=M PE=3 SV=1
Length=226
Score = 241 bits (615), Expect = 8e-80, Method: Composition-based stats.
Identities = 64/225 (28%), Positives = 116/225 (52%), Gaps = 7/225 (3%)
Query 3 DNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLA 62
N ++ + E+ L WN + +I++LQ+ + +R LY +K+ LW LWP+ LA
Sbjct 2 SNSSVPLLEVYVHLRNWNFSWNLILTLFIVVLQYGHYKYSRLLYGLKMSVLWCLWPLVLA 61
Query 63 CFVLAA--VYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLN 120
+ + ++WV G +I M+ I +W+ YFV SFRL+ R ++ W+FNPETN +++
Sbjct 62 LSIFDCFVNFNVDWVFFGFSILMSIITLCLWVMYFVNSFRLWRRVKTFWAFNPETNAIIS 121
Query 121 VPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLG-RCDIKDLPKEITVATS-RTLSYY 178
+ + G P+M + + ++ G L + GH + R + LPK + VAT T+
Sbjct 122 LQVYGHNYYLPVMAAPTGVTLTLLSGVLLVDGHKIATRVQVGQLPKYVIVATPSTTIVCD 181
Query 179 KLGASQRVGTDSGFAAYNRYRIGNYKLNTDH---AGSNDNIALLV 220
++G S + +G+A Y R + G++ + + L+
Sbjct 182 RVGRSVNETSQTGWAFYVRAKHGDFSGVASQEGVLSEREKLLHLI 226
>sp|Q0Q463|VME1_BC512 Membrane protein OS=Bat coronavirus 512/2005
OX=693999 GN=M PE=3 SV=1
Length=227
Score = 241 bits (615), Expect = 9e-80, Method: Composition-based stats.
Identities = 72/227 (32%), Positives = 126/227 (56%), Gaps = 7/227 (3%)
Query 1 MADNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVT 60
M+ N ++ VEE+ + L WN + +++LQ+ + +R LY +K+ LWLLWP+
Sbjct 1 MSSNQSVPVEEVIKHLRNWNFSWNIILTILLVVLQYGHYKYSRVLYGLKMAILWLLWPLV 60
Query 61 LACFVL--AAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNIL 118
LA + A + +NWV +I MAC+ ++W+ YFV S RL+ RT S WS+NPET+ +
Sbjct 61 LALSIFDAWASFNVNWVFFAFSILMACVTAVLWIMYFVNSIRLWRRTHSWWSYNPETDSI 120
Query 119 LNVPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVAT-SRTLS 176
L+V + G V P++ + + ++ G L + G+ + + +LP +TVA S T+
Sbjct 121 LSVSVLGRHVCLPILGAPTGVTLTLLNGTLLVEGYQVATGVQVNNLPGYVTVAKASTTIV 180
Query 177 YYKLGASQRVGTDSGFAAYNRYRIGNYKL---NTDHAGSNDNIALLV 220
Y ++G S + +G+A + + + G+Y T+ ++ I LV
Sbjct 181 YQRVGRSMNANSSTGWAFFVKSKHGDYYAAANPTEVVTDSEKILHLV 227
>sp|P36299|VME1_CVCAI Membrane protein OS=Canine coronavirus (strain
Insavc-1) OX=36391 GN=M PE=3 SV=1
Length=262
Score = 240 bits (613), Expect = 5e-79, Method: Composition-based stats.
Identities = 67/217 (31%), Positives = 116/217 (53%), Gaps = 7/217 (3%)
Query 11 ELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLAAV- 69
+L L WN + + +I +LQ+ + F+ IK++ +WLLWP+ LA + A
Sbjct 46 DLIWHLANWNFSWSVILIIFITVLQYGRPQFSWFVCGIKMLIMWLLWPIVLALTIFNAYL 105
Query 70 -YRIN-WVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTI 127
YR++ +V G ++A A + ++W+ YFV S +L+ RT+S WSFNPET+ +L V G
Sbjct 106 EYRVSRYVMFGFSVAGATVTFILWIMYFVRSIQLYRRTKSWWSFNPETSAILCVSALGRS 165
Query 128 VTRPLMESELVIGAVIIRGHLRMAGHSL-GRCDIKDLPKEITVATS-RTLSYYKLGASQR 185
PL + ++ G+L G + G +I +LPK + VA RT+ Y +G +
Sbjct 166 YVLPLEGVPTGVTLTLLSGNLCAEGFKIAGGMNIDNLPKYVMVALPVRTIVYTLVGKKLK 225
Query 186 VGTDSGFAAYNRYRIGNYK--LNTDHAGSNDNIALLV 220
+ +G+A Y + + G+Y TD+ ++ + +V
Sbjct 226 ASSATGWAYYVKSKAGDYSTDARTDNLSEHEKLLHMV 262
>sp|P59770|VME1_PEDVB Membrane protein OS=Porcine epidemic diarrhea
virus (strain Br1/87) OX=229033 GN=M PE=3 SV=1
Length=226
Score = 235 bits (599), Expect = 2e-77, Method: Composition-based stats.
Identities = 72/225 (32%), Positives = 122/225 (54%), Gaps = 7/225 (3%)
Query 3 DNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLA 62
NG+I V+E+ + L WN + +++LQ+ + + FLY +K+ LW+LWP+ LA
Sbjct 2 SNGSIPVDEVIEHLRNWNFTWNIILTILLVVLQYGHYKYSVFLYGVKMAILWILWPLVLA 61
Query 63 CFVL--AAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLN 120
+ A +++NWV +I MACI ++W+ YFV S RL+ RT S WSFNPET+ LL
Sbjct 62 LSLFDAWASFQVNWVFFAFSILMACITLMLWIMYFVNSIRLWRRTHSWWSFNPETDALLT 121
Query 121 VPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVAT-SRTLSYY 178
+ G V P++ + + ++ G L + G+ + + LP +TVA + T+ Y
Sbjct 122 TSVMGRQVCIPVLGAPTGVTLTLLSGTLLVEGYKVATGVQVSQLPNFVTVAKATTTIVYG 181
Query 179 KLGASQRVGTDSGFAAYNRYRIGNYKL---NTDHAGSNDNIALLV 220
++G S + +G+A Y R + G+Y + ++ + LV
Sbjct 182 RVGRSVNASSGTGWAFYVRSKHGDYSAVSNPSAVLTDSEKVPHLV 226
>sp|Q910E2|VME1_IBVG Membrane protein OS=Avian infectious bronchitis
virus (strain Gray) OX=31624 GN=M PE=2 SV=1
Length=223
Score = 231 bits (588), Expect = 9e-76, Method: Composition-based stats.
Identities = 67/204 (33%), Positives = 108/204 (53%), Gaps = 6/204 (3%)
Query 1 MADNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVT 60
MA+N T+ E+ L +++NL I L +LLQ+ Y+ R+R +YI+K++ LW WP+
Sbjct 1 MAENCTLDSEQAVLLFKEYNLFITAFLLFLTILLQYGYATRSRTIYILKMIVLWCFWPLN 60
Query 61 LACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLN 120
+A V++ +Y N AI + L ++ Y++ S RLF R RS WSFNPE+N + +
Sbjct 61 IAVGVISCIYPPNTGGLVAAIILTVFACLSFVGYWIQSCRLFKRCRSWWSFNPESNAVGS 120
Query 121 VPLRGTIVTRPLMES-ELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYK 179
+ L +ES +V+ +I G L G L +C+ LPK+I V T + Y+
Sbjct 121 ILLTNGQQCNFAIESVPMVLAPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIYR 180
Query 180 LGASQRVGTDSGFAAYNRYRIGNY 203
+ + G SG N+ R +
Sbjct 181 M-VQKYTGDQSG----NKKRFATF 199
>sp|P69606|VME1_IBVM Membrane protein OS=Avian infectious bronchitis
virus (strain M41) OX=11127 GN=M PE=2 SV=1
Length=225
Score = 226 bits (576), Expect = 6e-74, Method: Composition-based stats.
Identities = 64/202 (32%), Positives = 107/202 (53%), Gaps = 6/202 (3%)
Query 3 DNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLA 62
N T+ E+ +L +++NL I L ++LQ+ Y+ R++F+YI+K++ LW WP+ +A
Sbjct 5 TNCTLDFEQSVELFKEYNLFITAFLLFLTIILQYGYATRSKFIYILKMIVLWCFWPLNIA 64
Query 63 CFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVP 122
V++ +Y N AI + L ++ Y++ S RLF R RS WSFNPE+N + ++
Sbjct 65 VGVISCIYPPNTGGLVAAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVGSIL 124
Query 123 LRGTIVTRPLMES-ELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKLG 181
L +ES +V+ +I G L G L +C+ LPK+I V T + Y++
Sbjct 125 LTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIYRM- 183
Query 182 ASQRVGTDSGFAAYNRYRIGNY 203
+ G SG N+ R +
Sbjct 184 VQKYTGDQSG----NKKRFATF 201
>sp|P69607|VME1_IBVH5 Membrane protein OS=Avian infectious bronchitis
virus (strain H52) OX=231425 GN=M PE=2 SV=1
Length=225
Score = 226 bits (576), Expect = 6e-74, Method: Composition-based stats.
Identities = 64/202 (32%), Positives = 107/202 (53%), Gaps = 6/202 (3%)
Query 3 DNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLA 62
N T+ E+ +L +++NL I L ++LQ+ Y+ R++F+YI+K++ LW WP+ +A
Sbjct 5 TNCTLDFEQSVELFKEYNLFITAFLLFLTIILQYGYATRSKFIYILKMIVLWCFWPLNIA 64
Query 63 CFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVP 122
V++ +Y N AI + L ++ Y++ S RLF R RS WSFNPE+N + ++
Sbjct 65 VGVISCIYPPNTGGLVAAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVGSIL 124
Query 123 LRGTIVTRPLMES-ELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKLG 181
L +ES +V+ +I G L G L +C+ LPK+I V T + Y++
Sbjct 125 LTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIYRM- 183
Query 182 ASQRVGTDSGFAAYNRYRIGNY 203
+ G SG N+ R +
Sbjct 184 VQKYTGDQSG----NKKRFATF 201
>sp|P69604|VME1_IBVH1 Membrane protein OS=Avian infectious bronchitis
virus (strain H120) OX=231424 GN=M PE=3 SV=1
Length=225
Score = 226 bits (575), Expect = 1e-73, Method: Composition-based stats.
Identities = 64/202 (32%), Positives = 108/202 (53%), Gaps = 6/202 (3%)
Query 3 DNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLA 62
N T+ E+ +L +++NL I L ++LQ+ Y+ R++F+YI+K++ LW WP+ +A
Sbjct 5 TNCTLDFEQSVELFKEYNLFITAFLLFLTIILQYGYATRSKFIYILKMIVLWCFWPLNIA 64
Query 63 CFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVP 122
V++ +Y N AI + L ++ Y++ S RLF R RS WSFNPE+N + ++
Sbjct 65 VGVISCIYPPNTGGLVAAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVGSIL 124
Query 123 LRGTIVTRPLMES-ELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKLG 181
L +ES +V+ +I G L G L +C+ LPK+I V T + Y++
Sbjct 125 LTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIYRM- 183
Query 182 ASQRVGTDSGFAAYNRYRIGNY 203
+ +G SG N+ R +
Sbjct 184 VQKYIGDQSG----NKKRFATF 201
>sp|P69603|VME1_IBVD1 Membrane protein OS=Avian infectious bronchitis
virus (strain D1466) OX=231472 GN=M PE=3 SV=1
Length=225
Score = 226 bits (575), Expect = 1e-73, Method: Composition-based stats.
Identities = 64/202 (32%), Positives = 108/202 (53%), Gaps = 6/202 (3%)
Query 3 DNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLA 62
N T+ E+ +L +++NL I L ++LQ+ Y+ R++F+YI+K++ LW WP+ +A
Sbjct 5 TNCTLDFEQSVELFKEYNLFITAFLLFLTIILQYGYATRSKFIYILKMIVLWCFWPLNIA 64
Query 63 CFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVP 122
V++ +Y N AI + L ++ Y++ S RLF R RS WSFNPE+N + ++
Sbjct 65 VGVISCIYPPNTGGLVAAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVGSIL 124
Query 123 LRGTIVTRPLMES-ELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKLG 181
L +ES +V+ +I G L G L +C+ LPK+I V T + Y++
Sbjct 125 LTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIYRM- 183
Query 182 ASQRVGTDSGFAAYNRYRIGNY 203
+ +G SG N+ R +
Sbjct 184 VQKYIGDQSG----NKKRFATF 201
>sp|P69605|VME1_IBV41 Membrane protein OS=Avian infectious bronchitis
virus (strain D41) OX=236988 GN=M PE=3 SV=1
Length=225
Score = 226 bits (575), Expect = 1e-73, Method: Composition-based stats.
Identities = 64/202 (32%), Positives = 108/202 (53%), Gaps = 6/202 (3%)
Query 3 DNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLA 62
N T+ E+ +L +++NL I L ++LQ+ Y+ R++F+YI+K++ LW WP+ +A
Sbjct 5 TNCTLDFEQSVELFKEYNLFITAFLLFLTIILQYGYATRSKFIYILKMIVLWCFWPLNIA 64
Query 63 CFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVP 122
V++ +Y N AI + L ++ Y++ S RLF R RS WSFNPE+N + ++
Sbjct 65 VGVISCIYPPNTGGLVAAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVGSIL 124
Query 123 LRGTIVTRPLMES-ELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKLG 181
L +ES +V+ +I G L G L +C+ LPK+I V T + Y++
Sbjct 125 LTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIYRM- 183
Query 182 ASQRVGTDSGFAAYNRYRIGNY 203
+ +G SG N+ R +
Sbjct 184 VQKYIGDQSG----NKKRFATF 201
>sp|Q9J3N8|VME1_IBVDE Membrane protein OS=Avian infectious bronchitis
virus (strain DE072) OX=233265 GN=M PE=3 SV=2
Length=225
Score = 226 bits (575), Expect = 1e-73, Method: Composition-based stats.
Identities = 64/202 (32%), Positives = 106/202 (52%), Gaps = 6/202 (3%)
Query 3 DNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLA 62
N T+ E+ +L +++NL I L ++LQ+ Y+ R++F+YI+K++ LW WP+ +A
Sbjct 5 TNCTLDFEQSVELFKEYNLFITAFLLFLTIILQYGYATRSKFIYILKMIVLWCFWPLNIA 64
Query 63 CFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVP 122
V++ +Y N AI + L ++ Y++ S RLF R RS WSFNPE+N + ++
Sbjct 65 VGVISCIYPPNTGGLVAAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVGSIL 124
Query 123 LRGTIVTRPLMES-ELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKLG 181
L +ES V+ +I G L G L +C+ LPK+I V T + Y++
Sbjct 125 LTNGQQCNFAIESVPTVLSPIIKNGFLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIYRM- 183
Query 182 ASQRVGTDSGFAAYNRYRIGNY 203
+ G SG N+ R +
Sbjct 184 VQKYTGDQSG----NKKRFATF 201
>sp|P05136|VME1_IBV6 Membrane protein OS=Avian infectious bronchitis
virus (strain 6/82) OX=11121 GN=M PE=3 SV=1
Length=225
Score = 225 bits (574), Expect = 1e-73, Method: Composition-based stats.
Identities = 64/203 (32%), Positives = 106/203 (52%), Gaps = 6/203 (3%)
Query 2 ADNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTL 61
N T+ E+ QL +++NL + L +LLQ+ Y+ RN+ +YI+K++ LW WP+ +
Sbjct 4 TTNCTLGTEQAVQLFKEYNLFVTAFLLFLTILLQYGYATRNKVIYILKMIVLWCFWPLNI 63
Query 62 ACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNV 121
A ++ +Y N AI + L ++ Y++ SFRLF R RS W+FNPE+N + ++
Sbjct 64 AVGAISCIYPPNTGGLVAAIILTVFACLSFIGYWIQSFRLFKRCRSWWAFNPESNAVGSI 123
Query 122 PLRGTIVTRPLMES-ELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKL 180
L +ES +V+ +I G L G L +C+ LPK+I V T + Y++
Sbjct 124 LLTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIYRM 183
Query 181 GASQRVGTDSGFAAYNRYRIGNY 203
+ G SG N+ R +
Sbjct 184 -VQRYTGDQSG----NKKRFATF 201
>sp|P11222|VME1_IBVB2 Membrane protein OS=Avian infectious bronchitis
virus (strain Beaudette M42) OX=11123 GN=M PE=1 SV=1
Length=225
Score = 224 bits (570), Expect = 5e-73, Method: Composition-based stats.
Identities = 63/202 (31%), Positives = 105/202 (52%), Gaps = 6/202 (3%)
Query 3 DNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLA 62
N T+ E+ QL +++NL I L ++LQ+ Y+ R++ +Y +K++ LW WP+ +A
Sbjct 5 TNCTLDFEQSVQLFKEYNLFITAFLLFLTIILQYGYATRSKVIYTLKMIVLWCFWPLNIA 64
Query 63 CFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVP 122
V++ +Y N AI + L ++ Y++ S RLF R RS WSFNPE+N + ++
Sbjct 65 VGVISCIYPPNTGGLVAAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVGSIL 124
Query 123 LRGTIVTRPLMES-ELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKLG 181
L +ES +V+ +I G L G L +C+ LPK+I V T + Y++
Sbjct 125 LTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIYRM- 183
Query 182 ASQRVGTDSGFAAYNRYRIGNY 203
+ G SG N+ R +
Sbjct 184 VQKYTGDQSG----NKKRFATF 201
>sp|P69602|VME1_IBVBC Membrane protein OS=Avian infectious bronchitis
virus (strain Beaudette CK) OX=160235 GN=M PE=3 SV=1
Length=225
Score = 223 bits (569), Expect = 8e-73, Method: Composition-based stats.
Identities = 63/202 (31%), Positives = 104/202 (51%), Gaps = 6/202 (3%)
Query 3 DNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLA 62
N T+ E+ QL +++NL I L ++LQ+ Y+ R++ +Y +K++ LW WP+ +A
Sbjct 5 TNCTLDFEQSVQLFKEYNLFITAFLLFLTIILQYGYATRSKVIYTLKMIVLWCFWPLNIA 64
Query 63 CFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVP 122
V++ Y N AI + L ++ Y++ S RLF R RS WSFNPE+N + ++
Sbjct 65 VGVISCTYPPNTGGLVAAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVGSIL 124
Query 123 LRGTIVTRPLMES-ELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKLG 181
L +ES +V+ +I G L G L +C+ LPK+I V T + Y++
Sbjct 125 LTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIYRM- 183
Query 182 ASQRVGTDSGFAAYNRYRIGNY 203
+ G SG N+ R +
Sbjct 184 VQKYTGDQSG----NKKRFATF 201
>sp|P69601|VME1_IBVB Membrane protein OS=Avian infectious bronchitis
virus (strain Beaudette) OX=11122 GN=M PE=3 SV=1
Length=225
Score = 223 bits (569), Expect = 8e-73, Method: Composition-based stats.
Identities = 63/202 (31%), Positives = 104/202 (51%), Gaps = 6/202 (3%)
Query 3 DNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLA 62
N T+ E+ QL +++NL I L ++LQ+ Y+ R++ +Y +K++ LW WP+ +A
Sbjct 5 TNCTLDFEQSVQLFKEYNLFITAFLLFLTIILQYGYATRSKVIYTLKMIVLWCFWPLNIA 64
Query 63 CFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVP 122
V++ Y N AI + L ++ Y++ S RLF R RS WSFNPE+N + ++
Sbjct 65 VGVISCTYPPNTGGLVAAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVGSIL 124
Query 123 LRGTIVTRPLMES-ELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKLG 181
L +ES +V+ +I G L G L +C+ LPK+I V T + Y++
Sbjct 125 LTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIYRM- 183
Query 182 ASQRVGTDSGFAAYNRYRIGNY 203
+ G SG N+ R +
Sbjct 184 VQKYTGDQSG----NKKRFATF 201
>sp|Q91QS9|VME1_IBVBU Membrane protein OS=Avian infectious bronchitis
virus (strain Beaudette US) OX=160750 GN=M PE=3 SV=1
Length=225
Score = 222 bits (567), Expect = 2e-72, Method: Composition-based stats.
Identities = 63/202 (31%), Positives = 104/202 (51%), Gaps = 6/202 (3%)
Query 3 DNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLA 62
N T+ E+ QL +++NL I L ++LQ+ Y+ R + +Y +K++ LW WP+ +A
Sbjct 5 TNCTLDFEQSVQLFKEYNLFITAFLLFLTIILQYGYATRTKVIYTLKMIVLWCFWPLNIA 64
Query 63 CFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVP 122
V++ Y N +AI + L ++ Y++ S RLF R RS WSFNPE+N + ++
Sbjct 65 VGVISCTYPPNTGGLVVAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVGSIL 124
Query 123 LRGTIVTRPLMES-ELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKLG 181
L +ES +V+ +I G L G L +C+ LPK+I V T + Y++
Sbjct 125 LTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIYRM- 183
Query 182 ASQRVGTDSGFAAYNRYRIGNY 203
+ G SG N+ R +
Sbjct 184 VQKYTGDQSG----NKKRFATF 201
>sp|P12649|VME1_IBVK Membrane protein OS=Avian infectious bronchitis
virus (strain KB8523) OX=11126 GN=M PE=3 SV=1
Length=225
Score = 222 bits (565), Expect = 3e-72, Method: Composition-based stats.
Identities = 65/202 (32%), Positives = 107/202 (53%), Gaps = 6/202 (3%)
Query 3 DNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLA 62
N T+ E+ +L +++NL I L ++LQ+ Y+ R RF+YI+K++ LW WP+ +A
Sbjct 5 TNCTLDFEQSVELFKEYNLFITAFLLFLTIILQYGYATRIRFIYILKMIVLWCFWPLNIA 64
Query 63 CFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVP 122
V++ +Y N AI + L ++ Y++ S RLF R RS WSFNPE+N + ++
Sbjct 65 VGVISCIYPPNTGGLVAAIILTVFACLSFVGYWIQSCRLFKRCRSWWSFNPESNAVGSIL 124
Query 123 LRGTIVTRPLMES-ELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKLG 181
L +ES +V+ +I G L G L +C+ LPK+I V T+ + Y++
Sbjct 125 LTNGQQCNFAIESVPMVLAPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTADRRNIYRM- 183
Query 182 ASQRVGTDSGFAAYNRYRIGNY 203
+ G SG N+ R +
Sbjct 184 VQKYTGDQSG----NKKRFATF 201
>sp|P15422|VME1_CVH22 Membrane protein OS=Human coronavirus 229E
OX=11137 GN=M PE=3 SV=3
Length=225
Score = 203 bits (517), Expect = 6e-65, Method: Composition-based stats.
Identities = 64/224 (29%), Positives = 109/224 (49%), Gaps = 10/224 (4%)
Query 3 DNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTL- 61
DN T ++ L+ WN + +I++LQF + +R Y +K++ LWLLWP+ L
Sbjct 4 DNCT---GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVLWLLWPLVLA 60
Query 62 -ACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLN 120
+ F A + NW + MA +MW+ YF SFRLF R R+ W++NPE N +
Sbjct 61 LSIFDTWANWDSNWAFVAFSFFMAVSTLVMWVMYFANSFRLFRRARTFWAWNPEVNAITV 120
Query 121 VPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLG-RCDIKDLPKEITVATS-RTLSYY 178
+ G +P+ ++ I ++ G L + GH L + +LP+ +TVA T+ Y
Sbjct 121 TTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYS 180
Query 179 KLGASQRVGTDSGFAAYNRYRIGNYKL---NTDHAGSNDNIALL 219
++G S +G+ Y R + G++ + N+ +
Sbjct 181 RVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHF 224
>sp|F4JT80|RPP2B_ARATH Disease resistance protein RPP2B OS=Arabidopsis
thaliana OX=3702 GN=RPP2B PE=1 SV=2
Length=1207
Score = 37.6 bits (86), Expect = 0.087, Method: Composition-based stats.
Identities = 12/53 (23%), Positives = 24/53 (45%), Gaps = 2/53 (4%)
Query 113 PETNILLNVPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPK 165
PE + L N+ + RP+++ + + G+ ++ L C+I LP
Sbjct 808 PEMSCLSNLKIC--SFCRPVIDDSTGLVVLPFSGNSFLSDLYLTNCNIDKLPD 858
>sp|Q9FLT4|AB10A_ARATH ABC transporter A family member 10 OS=Arabidopsis
thaliana OX=3702 GN=ABCA10 PE=1 SV=2
Length=909
Score = 32.6 bits (73), Expect = 3.0, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query 21 LVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWL--LWPVTLACFV-LAAVYRINWVTG 77
L L ++L Y + R I+K+ L + W ++ A F+ L+ Y I+ V
Sbjct 329 FTWVVLLLFPVILTSLVYEKQERLRIIMKMHGLGIGPYWMISYAYFLTLSMFYVISLVIF 388
Query 78 GIAIAMACIVG----LMWLSYFV 96
G AI + + ++ YF+
Sbjct 389 GSAIGLRYFRLNDYSVQFIFYFI 411
>sp|A8J6J0|SULT2_CHLRE Proton/sulfate cotransporter 2 OS=Chlamydomonas
reinhardtii OX=3055 GN=SULTR2 PE=2 SV=1
Length=764
Score = 31.9 bits (71), Expect = 5.0, Method: Composition-based stats.
Identities = 35/176 (20%), Positives = 60/176 (34%), Gaps = 19/176 (11%)
Query 21 LVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLAAVYRINWVTGGIA 80
++G FL ++L + RF + L + P+T+ L AVY N GI
Sbjct 278 FIMGTTFLFLLVLFKEVGKRSKRFKW------LRPIGPLTVCIIGLCAVYVGNVQNKGIK 331
Query 81 IAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTIVTRPLMESELVIG 140
I A G L A T S W PE + L + ++ L + +
Sbjct 332 IIGAIKAG------------LPAPTVSWWFPMPEISQLFPTAIV-VMLVDLLESTSIARA 378
Query 141 AVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKLGASQRVGTDSGFAAYN 196
+ A + + + I + T S+ + + G +G A +
Sbjct 379 LARKNKYELHANQEIVGLGLANFAGAIFNCYTTTGSFSRSAVNNESGAKTGLACFI 434
>sp|B2TI04|MURC_CLOBB UDP-N-acetylmuramate--L-alanine ligase OS=Clostridium
botulinum (strain Eklund 17B / Type B) OX=935198
GN=murC PE=3 SV=1
Length=460
Score = 31.9 bits (71), Expect = 5.1, Method: Composition-based stats.
Identities = 23/129 (18%), Positives = 49/129 (38%), Gaps = 10/129 (8%)
Query 94 YFVASFRLFARTRSMWSFNPETNILLNVPLRGTIVTRPLMESELVIGAVIIRGHLRMAGH 153
YF+ + R S SF P ++LN+ + + E+ + G+
Sbjct 162 YFITEACEYKR--SFLSFFPYVGVILNIDADHLDYYKDI--DEITETFGQFADLIPNDGY 217
Query 154 SLGRCDIKDLPKEITVATSRTLSYY----KLGASQRVGTDSGFAAYNRYRIGN--YKLNT 207
+G + + + A TLSY + A + G A+++ Y+ + + L
Sbjct 218 LIGYVGDSRVKEILFKAKCNTLSYGFENADVTARNITFNEKGCASFDVYKHNDKLFDLTL 277
Query 208 DHAGSNDNI 216
+ G ++ +
Sbjct 278 SNPGEHNIL 286
Lambda K H a alpha
0.318 0.144 0.430 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0442 0.140 1.90 42.6 43.6
Effective search space used: 15146090536
Search has CONVERGED!
Database: uniprot_sprot.fasta
Posted date: Apr 3, 2024 12:05 PM
Number of letters in database: 206,678,396
Number of sequences in database: 571,282
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40