PSIBLAST 2.11.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Stephen F.
Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005)
"Protein database searches using compositionally adjusted
substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: uniprot_sprot.fasta
571,282 sequences; 206,678,396 total letters
Results from round 1
Query= sp|P0DTC9|NCAP_SARS2 Nucleoprotein OS=Severe acute respiratory
syndrome coronavirus 2 OX=2697049 GN=N PE=1 SV=1
Length=419
Score E
Sequences producing significant alignments: (Bits) Value
sp|P0DTC9|NCAP_SARS2 Nucleoprotein OS=Severe acute respiratory sy... 854 0.0
sp|Q3I5I7|NCAP_BCRP3 Nucleoprotein OS=Bat coronavirus Rp3/2004 OX... 674 0.0
sp|P59595|NCAP_SARS Nucleoprotein OS=Severe acute respiratory syn... 672 0.0
sp|Q3LZX4|NCAP_BCHK3 Nucleoprotein OS=Bat coronavirus HKU3 OX=442... 665 0.0
sp|Q0Q468|NCAP_BC279 Nucleoprotein OS=Bat coronavirus 279/2005 OX... 660 0.0
sp|A3EXD7|NCAP_BCHK5 Nucleoprotein OS=Bat coronavirus HKU5 OX=694... 284 6e-91
sp|Q0Q4E6|NCAP_BC133 Nucleoprotein OS=Bat coronavirus 133/2005 OX... 278 2e-88
sp|A3EXA1|NCAP_BCHK4 Nucleoprotein OS=Bat coronavirus HKU4 OX=694... 277 2e-88
sp|K9N4V7|NCAP_MERS1 Nucleoprotein OS=Middle East respiratory syn... 276 5e-88
sp|A3EXH0|NCAP_BCHK9 Nucleoprotein OS=Bat coronavirus HKU9 OX=694... 236 7e-72
sp|P18446|NCAP_CVM1 Nucleoprotein OS=Murine coronavirus (strain 1... 199 6e-58
sp|Q5MQC6|NCAP_CVHN1 Nucleoprotein OS=Human coronavirus HKU1 (iso... 197 4e-57
sp|Q0ZME3|NCAP_CVHN5 Nucleoprotein OS=Human coronavirus HKU1 (iso... 196 5e-57
sp|Q14EA6|NCAP_CVHN2 Nucleoprotein OS=Human coronavirus HKU1 (iso... 196 5e-57
sp|P03417|NCAP_CVMJH Nucleoprotein OS=Murine coronavirus (strain ... 196 1e-56
sp|P18448|NCAP_CVMS Nucleoprotein OS=Murine coronavirus (strain S... 195 2e-56
sp|P03416|NCAP_CVMA5 Nucleoprotein OS=Murine coronavirus (strain ... 192 2e-55
sp|P59713|NCAP_CVPV Nucleoprotein OS=Puffinosis coronavirus OX=76... 192 2e-55
sp|P18447|NCAP_CVM3 Nucleoprotein OS=Murine coronavirus (strain 3... 192 2e-55
sp|Q9PY96|NCAP_CVM2 Nucleoprotein OS=Murine coronavirus (strain 2... 192 3e-55
sp|Q8JSP4|NCAP_CVPIA Nucleoprotein OS=Porcine hemagglutinating en... 191 4e-55
sp|Q83360|NCAP_CVMDV Nucleoprotein OS=Murine coronavirus (strain ... 191 6e-55
sp|Q8BB23|NCAP_CVP67 Nucleoprotein OS=Porcine hemagglutinating en... 191 7e-55
sp|Q02915|NCAP_CVRSD Nucleoprotein OS=Rat coronavirus (strain 681... 189 3e-54
sp|Q9WCD0|NCAP_CVRNJ Nucleoprotein OS=Rat coronavirus (strain NJ)... 189 3e-54
sp|Q9DQX6|NCAP_CVEN9 Nucleoprotein OS=Equine coronavirus (isolate... 186 3e-53
sp|Q9QAR1|NCAP_CVBLS Nucleoprotein OS=Bovine coronavirus (strain ... 177 2e-49
sp|P26020|NCAP_CVBOK Nucleoprotein OS=Bovine coronavirus (strain ... 176 2e-49
sp|P59712|NCAP_CVBQ Nucleoprotein OS=Bovine coronavirus (strain Q... 176 2e-49
sp|P10527|NCAP_CVBM Nucleoprotein OS=Bovine coronavirus (strain M... 176 2e-49
sp|Q9QAR8|NCAP_CVBLY Nucleoprotein OS=Bovine coronavirus (strain ... 176 2e-49
sp|Q91A22|NCAP_CVBEN Nucleoprotein OS=Bovine coronavirus (strain ... 176 3e-49
sp|Q8V432|NCAP_CVBLU Nucleoprotein OS=Bovine coronavirus (strain ... 176 3e-49
sp|P19902|NCAP_CVBF Nucleoprotein OS=Bovine coronavirus (strain F... 175 9e-49
sp|P33469|NCAP_CVHOC Nucleoprotein OS=Human coronavirus OC43 OX=3... 170 4e-47
sp|Q9PZ50|NCAP_CVTMI Nucleoprotein OS=Turkey coronavirus (strain ... 121 2e-29
sp|P25909|NCAP_FIPV Nucleoprotein OS=Feline coronavirus (strain F... 120 4e-29
sp|Q96598|NCAP_IBVVI Nucleoprotein OS=Avian infectious bronchitis... 119 9e-29
sp|P12648|NCAP_IBVK Nucleoprotein OS=Avian infectious bronchitis ... 119 2e-28
sp|Q96605|NCAP_IBVV1 Nucleoprotein OS=Avian infectious bronchitis... 118 4e-28
sp|P32923|NCAP_IBVG Nucleoprotein OS=Avian infectious bronchitis ... 117 8e-28
sp|Q8JMI6|NCAP_IBVSA Nucleoprotein OS=Avian infectious bronchitis... 115 3e-27
sp|Q64960|NCAP_IBVAR Nucleoprotein OS=Avian infectious bronchitis... 115 4e-27
sp|Q9J4A3|NCAP_IBVD1 Nucleoprotein OS=Avian infectious bronchitis... 115 4e-27
sp|Q98WJ7|NCAP_IBVH1 Nucleoprotein OS=Avian infectious bronchitis... 114 8e-27
sp|P69598|NCAP_IBVBU Nucleoprotein OS=Avian infectious bronchitis... 114 1e-26
sp|P69597|NCAP_IBVBC Nucleoprotein OS=Avian infectious bronchitis... 114 1e-26
sp|P69596|NCAP_IBVB Nucleoprotein OS=Avian infectious bronchitis ... 114 1e-26
sp|Q9PZ49|NCAP_CVTNC Nucleoprotein OS=Turkey coronavirus (strain ... 112 2e-26
sp|Q9J4B0|NCAP_IBVDE Nucleoprotein OS=Avian infectious bronchitis... 112 5e-26
sp|Q98Y32|NCAP_IBVH5 Nucleoprotein OS=Avian infectious bronchitis... 111 1e-25
sp|Q9PZ51|NCAP_CVTIN Nucleoprotein OS=Turkey coronavirus (strain ... 109 3e-25
sp|Q82616|NCAP_IBVM Nucleoprotein OS=Avian infectious bronchitis ... 109 4e-25
sp|P05991|NCAP_CVPFS Nucleoprotein OS=Porcine transmissible gastr... 105 8e-24
sp|Q7T6S8|NCAP_CVCBG Nucleoprotein OS=Canine coronavirus (strain ... 104 2e-23
sp|Q04700|NCAP_CVCAK Nucleoprotein OS=Canine coronavirus (strain ... 103 5e-23
sp|P33463|NCAP_CVPR8 Nucleoprotein OS=Porcine respiratory coronav... 102 1e-22
sp|P24411|NCAP_CVPRM Nucleoprotein OS=Porcine respiratory coronav... 102 1e-22
sp|P04134|NCAP_CVPPU Nucleoprotein OS=Porcine transmissible gastr... 101 3e-22
sp|Q0Q462|NCAP_BC512 Nucleoprotein OS=Bat coronavirus 512/2005 OX... 100 5e-22
sp|P36298|NCAP_CVCAI Nucleoprotein OS=Canine coronavirus (strain ... 95.1 3e-20
sp|P15130|NCAP_CVH22 Nucleoprotein OS=Human coronavirus 229E OX=1... 89.0 5e-18
sp|Q07499|NCAP_PEDV7 Nucleoprotein OS=Porcine epidemic diarrhea v... 87.0 3e-17
sp|Q6Q1R8|NCAP_CVHNL Nucleoprotein OS=Human coronavirus NL63 OX=2... 61.2 5e-09
sp|P11278|PLYP_YERPS Periplasmic pectate lyase OS=Yersinia pseudo... 34.3 2.3
sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens OX=9606 GN=ANK1 PE... 33.9 3.6
sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus OX=10090 GN=Ank1 P... 33.1 6.7
sp|C0LGK4|Y2165_ARATH Probable LRR receptor-like serine/threonine... 32.7 7.1
>sp|P0DTC9|NCAP_SARS2 Nucleoprotein OS=Severe acute respiratory
syndrome coronavirus 2 OX=2697049 GN=N PE=1 SV=1
Length=419
Score = 854 bits (2207), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/419 (100%), Positives = 419/419 (100%), Gaps = 0/419 (0%)
Query 1 MSDNGPQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHG 60
MSDNGPQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHG
Sbjct 1 MSDNGPQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHG 60
Query 61 KEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAG 120
KEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAG
Sbjct 61 KEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAG 120
Query 121 LPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGS 180
LPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGS
Sbjct 121 LPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGS 180
Query 181 QASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQ 240
QASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQ
Sbjct 181 QASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQ 240
Query 241 QQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKH 300
QQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKH
Sbjct 241 QQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKH 300
Query 301 WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAY 360
WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAY
Sbjct 301 WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAY 360
Query 361 KTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFSKQLQQSMSSADSTQA 419
KTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFSKQLQQSMSSADSTQA
Sbjct 361 KTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFSKQLQQSMSSADSTQA 419
>sp|Q3I5I7|NCAP_BCRP3 Nucleoprotein OS=Bat coronavirus Rp3/2004
OX=349344 GN=N PE=3 SV=1
Length=421
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/421 (90%), Positives = 396/421 (94%), Gaps = 2/421 (0%)
Query 1 MSDNGPQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHG 60
MSDNGPQNQR+APRITFGGP+DST +NQ+G RSGAR KQRRPQGLPNNTASWFTALTQHG
Sbjct 1 MSDNGPQNQRSAPRITFGGPTDSTDNNQDGGRSGARPKQRRPQGLPNNTASWFTALTQHG 60
Query 61 KEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAG 120
KE+L+FPRGQGVPINTNS DDQIGYYRRATRR+RGGDGKMK+LSPRWYFYYLGTGPEA
Sbjct 61 KEELRFPRGQGVPINTNSGKDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEAS 120
Query 121 LPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGS 180
LPYGANK+GI+WVATEGALNTPKDHIGTRNP NNAAIVLQLPQGTTLPKGFYAEGSRGGS
Sbjct 121 LPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAAIVLQLPQGTTLPKGFYAEGSRGGS 180
Query 181 QASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQ 240
QASSRSSSRSR +SRNSTPGSSRG SPARMA GG+ ALALLLLDRLNQLESK+SG+ QQ
Sbjct 181 QASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGRSQQ 240
Query 241 QQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKH 300
QQGQTVTKKSAAEASKKPRQKRTATK YNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKH
Sbjct 241 QQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKH 300
Query 301 WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAY 360
WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTY GAIKLDDKDP FKD VILLNKHIDAY
Sbjct 301 WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDAY 360
Query 361 KTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFSKQLQQSMS--SADSTQ 418
K FPPTEPKKDKKKK DE Q LPQRQKKQ TVTLLPAAD+DDFS+QLQ SMS SADSTQ
Sbjct 361 KIFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFSRQLQNSMSGASADSTQ 420
Query 419 A 419
A
Sbjct 421 A 421
>sp|P59595|NCAP_SARS Nucleoprotein OS=Severe acute respiratory
syndrome coronavirus OX=694009 GN=N PE=1 SV=1
Length=422
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/422 (91%), Positives = 398/422 (94%), Gaps = 3/422 (1%)
Query 1 MSDNGPQ-NQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQH 59
MSDNGPQ NQR+APRITFGGP+DST +NQNG R+GAR KQRRPQGLPNNTASWFTALTQH
Sbjct 1 MSDNGPQSNQRSAPRITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALTQH 60
Query 60 GKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEA 119
GKE+L+FPRGQGVPINTNS PDDQIGYYRRATRR+RGGDGKMK+LSPRWYFYYLGTGPEA
Sbjct 61 GKEELRFPRGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEA 120
Query 120 GLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGG 179
LPYGANK+GI+WVATEGALNTPKDHIGTRNP NNAA VLQLPQGTTLPKGFYAEGSRGG
Sbjct 121 SLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGG 180
Query 180 SQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQ 239
SQASSRSSSRSR +SRNSTPGSSRG SPARMA GG+ ALALLLLDRLNQLESK+SGKGQ
Sbjct 181 SQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQ 240
Query 240 QQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYK 299
QQQGQTVTKKSAAEASKKPRQKRTATK YNVTQAFGRRGPEQTQGNFGDQ+LIRQGTDYK
Sbjct 241 QQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYK 300
Query 300 HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDA 359
HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTY GAIKLDDKDP FKD VILLNKHIDA
Sbjct 301 HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDA 360
Query 360 YKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFSKQLQQSMS--SADST 417
YKTFPPTEPKKDKKKK DE Q LPQRQKKQ TVTLLPAAD+DDFS+QLQ SMS SADST
Sbjct 361 YKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFSRQLQNSMSGASADST 420
Query 418 QA 419
QA
Sbjct 421 QA 422
>sp|Q3LZX4|NCAP_BCHK3 Nucleoprotein OS=Bat coronavirus HKU3 OX=442736
GN=N PE=3 SV=1
Length=421
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/421 (90%), Positives = 396/421 (94%), Gaps = 2/421 (0%)
Query 1 MSDNGPQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHG 60
MSDNGPQ+QR+APRITFGGP+DS +NQ+G RSGAR KQRRPQGLPNNTASWFTALTQHG
Sbjct 1 MSDNGPQSQRSAPRITFGGPADSNDNNQDGGRSGARPKQRRPQGLPNNTASWFTALTQHG 60
Query 61 KEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAG 120
KE+L+FPRGQGVPINTNS DDQIGYYRRATRR+RGGDGKMK+LSPRWYFYYLGTGPEA
Sbjct 61 KEELRFPRGQGVPINTNSGKDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEAS 120
Query 121 LPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGS 180
LPYGANK+GI+WVATEGALNTPKDHIGTRNP NNAAIVLQLPQGTTLPKGFYAEGSRGGS
Sbjct 121 LPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAAIVLQLPQGTTLPKGFYAEGSRGGS 180
Query 181 QASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQ 240
Q+SSRSSSRSR +SRNSTPGSSRG+SPAR+A GG+ ALALLLLDRLNQLESK+SGKGQQ
Sbjct 181 QSSSRSSSRSRGNSRNSTPGSSRGSSPARLASGGGETALALLLLDRLNQLESKVSGKGQQ 240
Query 241 QQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKH 300
Q GQTVTKKSAAEASKKPRQKRTATK YNVTQAFGRRGPEQTQGNFGDQELIRQG DYKH
Sbjct 241 QPGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQELIRQGIDYKH 300
Query 301 WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAY 360
WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTY GAIKLDDKDP FKD VILLNKHIDAY
Sbjct 301 WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDAY 360
Query 361 KTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFSKQLQQSMS--SADSTQ 418
KTFPPTEPKKDKKKK DE Q LPQRQKKQ TVTLLPAAD+DDFS+QLQ SMS SADSTQ
Sbjct 361 KTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFSRQLQHSMSGASADSTQ 420
Query 419 A 419
A
Sbjct 421 A 421
>sp|Q0Q468|NCAP_BC279 Nucleoprotein OS=Bat coronavirus 279/2005
OX=389167 GN=N PE=3 SV=1
Length=420
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/421 (90%), Positives = 394/421 (94%), Gaps = 3/421 (1%)
Query 1 MSDNGPQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHG 60
MSDNGPQNQR+APRITFGGPSDST +NQ+G RSGAR KQRRPQGLPNNTASWFTALTQHG
Sbjct 1 MSDNGPQNQRSAPRITFGGPSDSTDNNQDGGRSGARPKQRRPQGLPNNTASWFTALTQHG 60
Query 61 KEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAG 120
KE+L+FPRGQGVPINTNS DDQIGYYRRATRR+RGGDGKMK LSPRWYFYYLGTGPEA
Sbjct 61 KEELRFPRGQGVPINTNSGKDDQIGYYRRATRRVRGGDGKMKKLSPRWYFYYLGTGPEAS 120
Query 121 LPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGS 180
LPYGANK+GI+WVATEGALNTPKDHIGTRNP NNAAIVLQLPQGTTLPKGFYAEGSRGGS
Sbjct 121 LPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAAIVLQLPQGTTLPKGFYAEGSRGGS 180
Query 181 QASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQ 240
QASSRSSSRSR +SRNSTPGSSRG SPARMA G+ ALALLLLDRLNQLESK+SGKGQQ
Sbjct 181 QASSRSSSRSRGNSRNSTPGSSRGNSPARMASGSGETALALLLLDRLNQLESKVSGKGQQ 240
Query 241 QQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKH 300
QQGQTVTKKSAAEASKKPRQKRTATK+YNVTQAFGRRGPEQTQGNFGDQ+LIRQGTDYK+
Sbjct 241 QQGQTVTKKSAAEASKKPRQKRTATKSYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKY 300
Query 301 WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAY 360
WPQIAQFAPSASAFFGMSRIGMEVTP GTWLTY GAIKLDDKDP FKD VILLNKHIDAY
Sbjct 301 WPQIAQFAPSASAFFGMSRIGMEVTPLGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDAY 360
Query 361 KTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFSKQLQQSMS--SADSTQ 418
K FPPTEPKKDKKKK DE Q LPQR KKQ TVTLLPAAD+DDFS+QLQ SMS SADSTQ
Sbjct 361 KAFPPTEPKKDKKKKTDEAQPLPQR-KKQPTVTLLPAADMDDFSRQLQNSMSGASADSTQ 419
Query 419 A 419
A
Sbjct 420 A 420
>sp|A3EXD7|NCAP_BCHK5 Nucleoprotein OS=Bat coronavirus HKU5 OX=694008
GN=N PE=3 SV=1
Length=427
Score = 284 bits (727), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 182/380 (48%), Positives = 233/380 (61%), Gaps = 21/380 (6%)
Query 29 NGERSGARSKQRRPQGLPNNTASWFTALTQHGKEDLKFPRGQGVPINTNSSPDDQIGYYR 88
N +RSG + RP PN T SWFT LTQHGK+ L FP GQGVP+N NS+P GY+R
Sbjct 21 NSQRSGRPRTKPRPA--PNTTVSWFTGLTQHGKQPLAFPPGQGVPLNANSTPAQNAGYWR 78
Query 89 RATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGT 148
R R+I G+G K L+PRWYFYY GTGPEA LP+ + KDGIIWV GA + P GT
Sbjct 79 RQDRKINTGNG-TKPLAPRWYFYYTGTGPEANLPFRSVKDGIIWVHENGATDAP-SVFGT 136
Query 149 RNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPA 208
RNPAN+ AIV Q GTTLPK F+ EG+ G SQ+SSR+SSRS + S + S+ + A
Sbjct 137 RNPANDPAIVTQFAPGTTLPKNFHIEGTGGNSQSSSRASSRSSSRSSSRNGRSNNSSRNA 196
Query 209 RMAGNG-GD---AALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTA 264
A +G GD A +LLD +L +GKG +Q + +TKK A A +K R KR A
Sbjct 197 SPAPHGVGDVVGAGTLSVLLDLQKRLADLEAGKGNKQP-KVITKKDAQAAKQKMRHKRVA 255
Query 265 TKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM-- 322
TK YNV QAFG RGP Q NFGD + + GT+ WPQIA+ APSASAF S+ +
Sbjct 256 TKGYNVVQAFGMRGPGPLQSNFGDMQYNKLGTEDPRWPQIAELAPSASAFMSTSQFKVTH 315
Query 323 ----EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKK--A 376
E +L+Y+GAIKLD K+PN+ + +L+ +IDAYK+F PKK++K+K
Sbjct 316 QSNDENGEPVYFLSYSGAIKLDPKNPNYNKWMEILDANIDAYKSF----PKKERKQKPSG 371
Query 377 DETQALPQRQKKQQTVTLLP 396
D+ P + + L P
Sbjct 372 DDAATAPATSQMEDVPELPP 391
>sp|Q0Q4E6|NCAP_BC133 Nucleoprotein OS=Bat coronavirus 133/2005
OX=389230 GN=N PE=3 SV=1
Length=424
Score = 278 bits (710), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 183/362 (51%), Positives = 232/362 (64%), Gaps = 26/362 (7%)
Query 36 RSKQRRPQGLPNNTASWFTALTQHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIR 95
R + +P+ PNNT SW+T LTQHGK L FP GQGVP+N NS+ GY+RR R+I
Sbjct 27 RGRNPKPRPAPNNTVSWYTGLTQHGKNPLAFPPGQGVPLNANSTTAQNAGYWRRQDRKIN 86
Query 96 GGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNA 155
G+G +K L+PRW+FYY GTGPEA LP+ + KDGI+WV EGA + P GTRNPAN+A
Sbjct 87 TGNG-VKQLAPRWFFYYTGTGPEANLPFRSVKDGIVWVYEEGATDAP-SVFGTRNPANDA 144
Query 156 AIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTP-----GSSRGTSPARM 210
AIV Q GT +PK F+ EG+ G SQ+SSR+SS SRNSSR+++ +SRGTSP
Sbjct 145 AIVCQFAPGTLIPKNFHIEGTGGNSQSSSRASSNSRNSSRSNSRGGRSTSNSRGTSPVSH 204
Query 211 AGNGGDAALALLLL----DRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATK 266
++ AL LL RL LES G+ +Q + VTKK AA A K R KR ATK
Sbjct 205 GVGSAESLAALPLLLDLQKRLADLES-----GKSKQPKVVTKKDAAAAKNKMRHKRVATK 259
Query 267 AYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTP 326
+NVTQAFG RGP QGNFGD + GT+ WPQ+A+ APSASAF MS+ +
Sbjct 260 GFNVTQAFGLRGPGPLQGNFGDMNYNKFGTEDPRWPQMAELAPSASAFMSMSQFKLTHQS 319
Query 327 SG------TWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQ 380
+ +L+Y+GAIKLD K+PN+K + LL +IDAYKTF PKK++K K E
Sbjct 320 NDDKGDPIYFLSYSGAIKLDPKNPNYKKWLELLEANIDAYKTF----PKKERKPKTTEDG 375
Query 381 AL 382
A+
Sbjct 376 AV 377
>sp|A3EXA1|NCAP_BCHK4 Nucleoprotein OS=Bat coronavirus HKU4 OX=694007
GN=N PE=3 SV=1
Length=423
Score = 277 bits (709), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 185/362 (51%), Positives = 233/362 (64%), Gaps = 26/362 (7%)
Query 36 RSKQRRPQGLPNNTASWFTALTQHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIR 95
R + +P+ PNNT SW+T LTQHGK L FP GQGVP+N NS+ GY+RR R+I
Sbjct 27 RGRNPKPRPAPNNTVSWYTGLTQHGKNPLAFPPGQGVPLNANSTTAQNAGYWRRQDRKIN 86
Query 96 GGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNA 155
G+G +K L+PRW+FYY GTGPEA LP+ + KDGI+WV EGA + P GTRNPAN+A
Sbjct 87 TGNG-VKQLAPRWFFYYTGTGPEANLPFRSVKDGIVWVYEEGATDAP-SVFGTRNPANDA 144
Query 156 AIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPG-----SSRGTSPARM 210
AIV Q GT +PK F+ EG+ G SQ+SSR+SS SRNSSR+S+ G +SRGTSP
Sbjct 145 AIVCQFAPGTLIPKNFHIEGTGGNSQSSSRASSNSRNSSRSSSRGGRSTSNSRGTSPVSH 204
Query 211 AGNGGDAALALLLL----DRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATK 266
++ AL LL RL LES G+ +Q + VTKK AA A K R KR ATK
Sbjct 205 GVGSAESLAALPLLLDLQKRLADLES-----GKSKQPKVVTKKDAAAAKNKMRHKRVATK 259
Query 267 AYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTP 326
+NVTQAFG RGP QGNFGD + GT+ WPQ+A+ APSASAF MS+ +
Sbjct 260 GFNVTQAFGLRGPGPLQGNFGDMNYNKFGTEDPRWPQMAELAPSASAFMSMSQFKLTHQS 319
Query 327 SG------TWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQ 380
+ +L+Y+GAIKLD K+PN+K + LL +IDAYKTF PKK++K K E
Sbjct 320 NDDKGDPIYFLSYSGAIKLDPKNPNYKKWLELLESNIDAYKTF----PKKERKPKTTEDG 375
Query 381 AL 382
A+
Sbjct 376 AV 377
>sp|K9N4V7|NCAP_MERS1 Nucleoprotein OS=Middle East respiratory
syndrome-related coronavirus (isolate United Kingdom/H123990006/2012)
OX=1263720 GN=N PE=1 SV=1
Length=411
Score = 276 bits (705), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 186/366 (51%), Positives = 241/366 (66%), Gaps = 24/366 (7%)
Query 12 APR-ITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHGKEDLKFPRGQ 70
APR ++F +D T +N S R + +P+ PNNT SW+T LTQHGK L FP GQ
Sbjct 6 APRAVSFADNNDITNTN----LSRGRGRNPKPRAAPNNTVSWYTGLTQHGKVPLTFPPGQ 61
Query 71 GVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGI 130
GVP+N NS+P GY+RR R+I G+G +K L+PRWYFYY GTGPEA LP+ A KDGI
Sbjct 62 GVPLNANSTPAQNAGYWRRQDRKINTGNG-IKQLAPRWYFYYTGTGPEAALPFRAVKDGI 120
Query 131 IWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRS 190
+WV +GA + P GTRNP N++AIV Q GT LPK F+ EG+ G SQ+SSR+SS S
Sbjct 121 VWVHEDGATDAPST-FGTRNPNNDSAIVTQFAPGTKLPKNFHIEGTGGNSQSSSRASSVS 179
Query 191 RNSSRNSTPGS-----SRGTSP--ARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQG 243
RNSSR+S+ GS +RGTSP + + GGD D LN+L++ SGK +Q Q
Sbjct 180 RNSSRSSSQGSRSGNSTRGTSPGPSGIGAVGGDLLYL----DLLNRLQALESGKVKQSQP 235
Query 244 QTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQ 303
+ +TKK AA A K R KRT+TK++N+ QAFG RGP QGNFGD +L + GT+ WPQ
Sbjct 236 KVITKKDAAAAKNKMRHKRTSTKSFNMVQAFGLRGPGDLQGNFGDLQLNKLGTEDPRWPQ 295
Query 304 IAQFAPSASAFFGMSRIGMEVTPSG------TWLTYTGAIKLDDKDPNFKDQVILLNKHI 357
IA+ AP+ASAF GMS+ + + +L Y+GAIKLD K+PN+ + LL ++I
Sbjct 296 IAELAPTASAFMGMSQFKLTHQNNDDHGNPVYFLRYSGAIKLDPKNPNYNKWLELLEQNI 355
Query 358 DAYKTF 363
DAYKTF
Sbjct 356 DAYKTF 361
>sp|A3EXH0|NCAP_BCHK9 Nucleoprotein OS=Bat coronavirus HKU9 OX=694006
GN=N PE=3 SV=1
Length=468
Score = 236 bits (602), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 157/371 (42%), Positives = 208/371 (56%), Gaps = 17/371 (5%)
Query 12 APRITFGGPSDSTGSN---QNGERSGARSKQ----------RRPQGLPNNTASWFTALTQ 58
+P++TF SD + S +NG R+GAR K +P+ P SWF L Q
Sbjct 13 SPKVTFKQESDGSDSESERRNGNRNGARPKNNNSRGSAPKPEKPKAAPPQNVSWFAPLVQ 72
Query 59 HGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPE 118
GK +L+FPRG+GVP++ + GY+ R R + G GK +PRWYFYY GTG
Sbjct 73 TGKAELRFPRGEGVPVSQGVDSTYEHGYWLRTQRSFQKG-GKQVLANPRWYFYYTGTGRF 131
Query 119 AGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRG 178
L +G I+WV EGA +GTRNP+N+ AI +QL G +PKGFYAEG
Sbjct 132 GDLRFGTKNPDIVWVGQEGANINRLGDMGTRNPSNDGAIPVQLAGG--IPKGFYAEGRGS 189
Query 179 GSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSG-K 237
+ S S + SR SSR ++ SSRG SP R A N L+ +L +LES++SG K
Sbjct 190 RGNSRSSSRNSSRASSRGNSRASSRGASPGRPAANPSTEPWMAYLVQKLERLESQVSGTK 249
Query 238 GQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTD 297
+ VTK AA +KK R KRTA K VT +GRRGP +GNFGD+E+I+ GTD
Sbjct 250 PATKNPVQVTKNEAAANAKKLRHKRTAHKGSGVTVNYGRRGPGDLEGNFGDREMIKLGTD 309
Query 298 YKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHI 357
+ AQ AP+ S+F MS + WL Y GAIKL DPN++ +L +++
Sbjct 310 DPRFAAAAQMAPNVSSFLFMSHLSTRDEDDALWLHYKGAIKLPKDDPNYEQWTKILAENL 369
Query 358 DAYKTFPPTEP 368
+AYK FPPTEP
Sbjct 370 NAYKDFPPTEP 380
>sp|P18446|NCAP_CVM1 Nucleoprotein OS=Murine coronavirus (strain
1) OX=11139 GN=N PE=3 SV=1
Length=455
Score = 199 bits (506), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 133/352 (38%), Positives = 186/352 (53%), Gaps = 36/352 (10%)
Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108
SWF+ +TQ K ++ +F +GQGVPI +Q GY+ R RR + DG+ K L PRW
Sbjct 67 SWFSGITQFQKGKEFQFAQGQGVPIANGIPASEQKGYWYRHNRRSFKTPDGQQKQLLPRW 126
Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLP 168
YFYYLGTGP AG YG + DG++WVA++ A I R+P+++ AI + GT LP
Sbjct 127 YFYYLGTGPHAGAEYGDDIDGVVWVASQQADTKTTADIVERDPSSHEAIPTRFAPGTVLP 186
Query 169 KGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLN 228
+GFY EGS + AS S N SS PA +A L+L +L
Sbjct 187 QGFYVEGSGRSAPASRSGSRSQSRGPNNRARSSSNQRQPASTVKPDMAEEIAALVLAKL- 245
Query 229 QLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQG 284
K +G+ +Q VTK+SA E + KPRQKRT K V Q FG+RGP Q
Sbjct 246 ---GKDAGQPKQ-----VTKQSAKEVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ--- 294
Query 285 NFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSG---------TWLTYTG 335
NFG E+++ GT +P +A+ AP+ SAFF S++ + SG L Y+G
Sbjct 295 NFGGSEMLKLGTSDPQFPILAELAPTPSAFFFGSKLELVKKNSGGADDPTKDVYELQYSG 354
Query 336 AIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQALPQRQK 387
AI+ D P F+ + +LN+++DAY +D+ AD PQR++
Sbjct 355 AIRFDSTLPGFETIMKVLNENLDAY---------QDQAGGADVVSPKPQRKR 397
>sp|Q5MQC6|NCAP_CVHN1 Nucleoprotein OS=Human coronavirus HKU1
(isolate N1) OX=443239 GN=N PE=1 SV=1
Length=441
Score = 197 bits (500), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 133/362 (37%), Positives = 196/362 (54%), Gaps = 34/362 (9%)
Query 41 RPQGLPNNTASWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGD 98
+PQG SWF+ +TQ K D KF GQGVPI P + GY+ R +RR + D
Sbjct 53 QPQGNTIPHYSWFSGITQFQKGRDFKFSDGQGVPIAFGVPPSEAKGYWYRHSRRSFKTAD 112
Query 99 GKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGA-LNTPKDHIGTRNPANNAAI 157
G+ K L PRWYFYYLGTGP A YG + +G+ WVA A +TP D + +R+P AI
Sbjct 113 GQQKQLLPRWYFYYLGTGPYANASYGESLEGVFWVANHQADTSTPSD-VSSRDPTTQEAI 171
Query 158 VLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDA 217
+ P GT LP+G+Y EGS G S ++SR SRS++ N+ SR S R + D+
Sbjct 172 PTRFPPGTILPQGYYVEGS-GRSASNSRPGSRSQSRGPNNR-SLSRSNSNFRHS----DS 225
Query 218 ALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQA 273
+ + D + L ++ G+ + Q VTK++A E KPRQKRT K NV Q
Sbjct 226 IVKPDMADEIANL--VLAKLGKDSKPQQVTKQNAKEIRHKILTKPRQKRTPNKHCNVQQC 283
Query 274 FGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGT---- 329
FG+RGP Q NFG+ E+++ GT+ +P +A+ AP+ AFF S++ + S
Sbjct 284 FGKRGPSQ---NFGNAEMLKLGTNDPQFPILAELAPTPGAFFFGSKLDLVKRDSEADSPV 340
Query 330 ----WLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQALPQR 385
L Y+G+I+ D P F+ + +L ++++AY ++ +D + PQR
Sbjct 341 KDVFELHYSGSIRFDSTLPGFETIMKVLEENLNAYVN-------SNQNTDSDSLSSKPQR 393
Query 386 QK 387
++
Sbjct 394 KR 395
>sp|Q0ZME3|NCAP_CVHN5 Nucleoprotein OS=Human coronavirus HKU1
(isolate N5) OX=443241 GN=N PE=3 SV=1
Length=441
Score = 196 bits (499), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 130/334 (39%), Positives = 186/334 (56%), Gaps = 25/334 (7%)
Query 41 RPQGLPNNTASWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGD 98
+PQG P SWF+ +TQ K D KFP GQGVPI P + GY+ + RR + D
Sbjct 53 QPQGNPIPHYSWFSGITQFQKGRDFKFPDGQGVPIAYGIPPSEAKGYWYKHNRRSFKTAD 112
Query 99 GKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIV 158
G+ K L PRWYFYYLGTGP A YG +GI WVA+ A + + R+P AI
Sbjct 113 GQQKQLLPRWYFYYLGTGPYASSSYGDAHEGIFWVASHQADTSIPSDVSARDPTIQEAIP 172
Query 159 LQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAA 218
+ GT LP+G+Y EGS G S ++SR SRS++ N+ SR S R + D+
Sbjct 173 TRFSPGTILPQGYYVEGS-GRSASNSRPGSRSQSRGPNNR-SLSRSNSNFRHS----DSI 226
Query 219 LALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQAF 274
+ + D + L ++ G+ + Q VTK++A E KPRQKRT K NV Q F
Sbjct 227 VKPDMADEIASL--VLAKLGKDSKPQQVTKQNAKEIRHKILMKPRQKRTPNKFCNVQQCF 284
Query 275 GRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM------EVTPS- 327
G+RGP Q NFG+ E+++ GT+ +P +A+ AP+ AFF S++ + +PS
Sbjct 285 GKRGPLQ---NFGNSEMLKLGTNDPQFPILAELAPTPGAFFFGSKLELFKRDSDADSPSK 341
Query 328 GTW-LTYTGAIKLDDKDPNFKDQVILLNKHIDAY 360
T+ L Y+G+I+ D P F+ + +L +++DAY
Sbjct 342 DTFELRYSGSIRFDSTLPGFETIMKVLKENLDAY 375
>sp|Q14EA6|NCAP_CVHN2 Nucleoprotein OS=Human coronavirus HKU1
(isolate N2) OX=443240 GN=N PE=3 SV=1
Length=441
Score = 196 bits (499), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 130/334 (39%), Positives = 186/334 (56%), Gaps = 25/334 (7%)
Query 41 RPQGLPNNTASWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGD 98
+PQG P SWF+ +TQ K D KFP GQGVPI P + GY+ + RR + D
Sbjct 53 QPQGNPIPHYSWFSGITQFQKGRDFKFPDGQGVPIAYGIPPSEAKGYWYKHNRRSFKTAD 112
Query 99 GKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIV 158
G+ K L PRWYFYYLGTGP A YG +GI WVA+ A + + R+P AI
Sbjct 113 GQQKQLLPRWYFYYLGTGPYASSSYGDAHEGIFWVASHQADTSIPSDVSARDPTIQEAIP 172
Query 159 LQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAA 218
+ GT LP+G+Y EGS G S ++SR SRS++ N+ SR S R + D+
Sbjct 173 TRFSPGTILPQGYYVEGS-GRSASNSRPGSRSQSRGPNNR-SLSRSNSNFRHS----DSI 226
Query 219 LALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQAF 274
+ + D + L ++ G+ + Q VTK++A E KPRQKRT K NV Q F
Sbjct 227 VKPDMADEIASL--VLAKLGKDSKPQQVTKQNAKEIRHKILMKPRQKRTPNKFCNVQQCF 284
Query 275 GRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM------EVTPS- 327
G+RGP Q NFG+ E+++ GT+ +P +A+ AP+ AFF S++ + +PS
Sbjct 285 GKRGPLQ---NFGNSEMLKLGTNDPQFPILAELAPTPGAFFFGSKLELFKRDSDADSPSK 341
Query 328 GTW-LTYTGAIKLDDKDPNFKDQVILLNKHIDAY 360
T+ L Y+G+I+ D P F+ + +L +++DAY
Sbjct 342 DTFELRYSGSIRFDSTLPGFETIMKVLKENLDAY 375
>sp|P03417|NCAP_CVMJH Nucleoprotein OS=Murine coronavirus (strain
JHM) OX=11144 GN=N PE=1 SV=1
Length=455
Score = 196 bits (498), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 128/327 (39%), Positives = 182/327 (56%), Gaps = 29/327 (9%)
Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108
SWF+ +TQ K ++ +F +GQGVPI Q GY+ R RR + DG+ K L PRW
Sbjct 67 SWFSGITQFQKGKEFQFAQGQGVPIANGIPASQQKGYWYRHNRRSFKTPDGQQKQLLPRW 126
Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLP 168
YFYYLGTGP AG YG + +G++WVA++ A I R+P+++ AI + GT LP
Sbjct 127 YFYYLGTGPYAGAEYGDDIEGVVWVASQQAETRTSADIVERDPSSHEAIPTRFAPGTVLP 186
Query 169 KGFYAEGSRGGSQASSRSSSRSRNSS-RNSTPGSSRGTSPARMAGNGGDAALALLLLDRL 227
+GFY EGS G S +SRS SR ++ N SS PA +A L+L +L
Sbjct 187 QGFYVEGS-GRSAPASRSGSRPQSRGPNNRARSSSNQRQPASTVKPDMAEEIAALVLAKL 245
Query 228 NQLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQ 283
K +G+ +Q VTK+SA E + KPRQKRT K V Q FG+RGP Q
Sbjct 246 ----GKDAGQPKQ-----VTKQSAKEVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ-- 294
Query 284 GNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSG---------TWLTYT 334
NFG E+++ GT +P +A+ AP+A AFF S++ + SG L Y+
Sbjct 295 -NFGGPEMLKLGTSDPQFPILAELAPTAGAFFFGSKLELVKKNSGGADGPTKDVYELQYS 353
Query 335 GAIKLDDKDPNFKDQVILLNKHIDAYK 361
GA++ D P F+ + +LN++++AY+
Sbjct 354 GAVRFDSTLPGFETIMKVLNENLNAYQ 380
>sp|P18448|NCAP_CVMS Nucleoprotein OS=Murine coronavirus (strain
S) OX=11145 GN=N PE=3 SV=1
Length=454
Score = 195 bits (496), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 131/355 (37%), Positives = 187/355 (53%), Gaps = 37/355 (10%)
Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108
SWF+ +TQ K ++ +F +GQGVPI +Q GY+ R RR + DG+ K L PRW
Sbjct 67 SWFSGITQFQKGKEFQFVQGQGVPIANGIPASEQKGYWYRHNRRSFKTPDGQQKQLLPRW 126
Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLP 168
YFYYLGTGP AG YG + +G++WVA++ A I R+P+++ AI + GT LP
Sbjct 127 YFYYLGTGPHAGAEYGDDIEGVVWVASQQADTKTTADIVERDPSSHEAIPTRFAPGTVLP 186
Query 169 KGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLN 228
+GFY EGS + AS S N SS PA +A L+L +L
Sbjct 187 QGFYVEGSGRSAPASRSGSRSQSRGPNNRARSSSNQRQPASTVKPDMAEEIAALVLAKL- 245
Query 229 QLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQG 284
K +G+ +Q VTK+SA E + KPRQKRT K V Q FG+RGP Q
Sbjct 246 ---GKDAGQPKQ-----VTKQSAKEVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ--- 294
Query 285 NFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM---------EVTPSGTWLTYTG 335
NFG E+++ GT +P +A+ AP+A AFF S++ + E T L Y+G
Sbjct 295 NFGGSEMLKLGTSDPQFPILAELAPTAGAFFFGSKLELVKKNSGGADEPTKDVYELQYSG 354
Query 336 AIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQ 390
A++ D P F+ + +LN++++AY+ K AD PQR+ ++Q
Sbjct 355 AVRFDSTLPGFETIMKVLNENLNAYQ----------KDGGADVVSPKPQRKGRRQ 399
>sp|P03416|NCAP_CVMA5 Nucleoprotein OS=Murine coronavirus (strain
A59) OX=11142 GN=N PE=1 SV=2
Length=454
Score = 192 bits (489), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 130/355 (37%), Positives = 183/355 (52%), Gaps = 37/355 (10%)
Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108
SWF+ +TQ K ++ +F GQGVPI +Q GY+ R RR + DG+ K L PRW
Sbjct 67 SWFSGITQFQKGKEFQFAEGQGVPIANGIPASEQKGYWYRHNRRSFKTPDGQQKQLLPRW 126
Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLP 168
YFYYLGTGP AG YG + +G+ WVA A + I R+P+++ AI + GT LP
Sbjct 127 YFYYLGTGPHAGASYGDSIEGVFWVANSQADTNTRSDIVERDPSSHEAIPTRFAPGTVLP 186
Query 169 KGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLN 228
+GFY EGS + AS S N SS PA +A L+L +L
Sbjct 187 QGFYVEGSGRSAPASRSGSRSQSRGPNNRARSSSNQRQPASTVKPDMAEEIAALVLAKL- 245
Query 229 QLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQG 284
K +G+ +Q VTK+SA E + KPRQKRT K V Q FG+RGP Q
Sbjct 246 ---GKDAGQPKQ-----VTKQSAKEVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ--- 294
Query 285 NFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM---------EVTPSGTWLTYTG 335
NFG E+++ GT +P +A+ AP+ AFF S++ + E T L Y+G
Sbjct 295 NFGGSEMLKLGTSDPQFPILAELAPTVGAFFFGSKLELVKKNSGGADEPTKDVYELQYSG 354
Query 336 AIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQ 390
A++ D P F+ + +LN++++AY+ K AD PQR+ ++Q
Sbjct 355 AVRFDSTLPGFETIMKVLNENLNAYQ----------KDGGADVVSPKPQRKGRRQ 399
>sp|P59713|NCAP_CVPV Nucleoprotein OS=Puffinosis coronavirus OX=76583
GN=N PE=2 SV=1
Length=457
Score = 192 bits (489), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 132/369 (36%), Positives = 191/369 (52%), Gaps = 36/369 (10%)
Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108
SWF+ +TQ K ++ KF GQGVPI +Q GY+ R RR + DG+ K L PRW
Sbjct 67 SWFSGITQFQKGKEFKFAEGQGVPIANGIPATEQKGYWFRHNRRSFKSPDGQQKQLLPRW 126
Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLP 168
YFYYLGTGP AG YG + +G+ WVA + A I R+P+++ AI + GT LP
Sbjct 127 YFYYLGTGPYAGAEYGDDVEGVCWVANKQADTRTSADIAERDPSSHEAIPTRFAPGTFLP 186
Query 169 KGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLN 228
+G+Y EGS + AS S N SS PA + +A L+L +L
Sbjct 187 QGYYVEGSGRSAPASRSGSRSQSRGPNNRARSSSNQRQPASIVKPDMAEEIAALVLAKL- 245
Query 229 QLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQG 284
K +G+ +Q VTK+SA E + KPRQKRT K V Q FG+RGP Q
Sbjct 246 ---GKDAGQPKQ-----VTKQSAKEVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ--- 294
Query 285 NFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM---------EVTPSGTWLTYTG 335
NFG E+++ GT +P +A+ AP+A AFF S++ + E T L Y+G
Sbjct 295 NFGGPEMLKLGTSDPQFPILAELAPTAGAFFFGSKLELVKKNSVGVDEPTKDVYELQYSG 354
Query 336 AIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLL 395
A++ D P F+ + +L ++++AY +++ AD PQR++ Q+ V
Sbjct 355 AVRFDSTLPGFETIMKVLRENLNAY---------QNQDGGADVVSPKPQRKRGQRQVAQK 405
Query 396 PAADLDDFS 404
++D+ S
Sbjct 406 KNDEVDNVS 414
>sp|P18447|NCAP_CVM3 Nucleoprotein OS=Murine coronavirus (strain
3) OX=11140 GN=N PE=1 SV=1
Length=454
Score = 192 bits (489), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 130/355 (37%), Positives = 183/355 (52%), Gaps = 37/355 (10%)
Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108
SWF+ +TQ K ++ +F GQGVPI +Q GY+ R RR + DG+ K L PRW
Sbjct 67 SWFSGITQFQKGKEFQFAEGQGVPIANGIPASEQKGYWYRHNRRSFKTPDGQQKQLLPRW 126
Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLP 168
YFYYLGTGP AG YG + +G+ WVA A + I R+P+++ AI + GT LP
Sbjct 127 YFYYLGTGPHAGASYGDSIEGVFWVANSQADTNTRSDIVERDPSSHEAIPTRFAPGTVLP 186
Query 169 KGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLN 228
+GFY EGS + AS S N SS PA +A L+L +L
Sbjct 187 QGFYVEGSGRSAPASRSGSRSQSRGPNNRARSSSNQRQPASTVKPDMAEEIAALVLAKL- 245
Query 229 QLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQG 284
K +G+ +Q VTK+SA E + KPRQKRT K V Q FG+RGP Q
Sbjct 246 ---GKDAGQPKQ-----VTKQSAKEVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ--- 294
Query 285 NFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM---------EVTPSGTWLTYTG 335
NFG E+++ GT +P +A+ AP+ AFF S++ + E T L Y+G
Sbjct 295 NFGGSEMLKLGTSDPQFPILAELAPTVGAFFFGSKLELVKKNSGGADEPTKDVYELQYSG 354
Query 336 AIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQ 390
A++ D P F+ + +LN++++AY+ K AD PQR+ ++Q
Sbjct 355 AVRFDSTLPGFETIMKVLNENLNAYQ----------KDGGADVVSPKPQRKGRRQ 399
>sp|Q9PY96|NCAP_CVM2 Nucleoprotein OS=Murine coronavirus (strain
2) OX=76344 GN=N PE=2 SV=1
Length=451
Score = 192 bits (487), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 123/326 (38%), Positives = 176/326 (54%), Gaps = 27/326 (8%)
Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108
SWF+ +TQ K ++ +F +GQGVPI + +Q GY+ R RR + DG+ K L PRW
Sbjct 63 SWFSGITQFQKGKEFQFAQGQGVPIASGIPASEQKGYWYRHNRRSFKTPDGQHKQLLPRW 122
Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLP 168
YFYYLGTGP AG YG + +G++WVA++ A + R+P+++ AI + GT LP
Sbjct 123 YFYYLGTGPHAGAEYGDDIEGVVWVASQQADTKTTADVVERDPSSHEAIPTRFAPGTVLP 182
Query 169 KGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLN 228
+GFY EGS + AS S N SS PA +A L+L +L
Sbjct 183 QGFYVEGSGRSAPASRSGSRSQSRGPNNRARSSSNQRQPASAVKPDMAEEIAALVLAKLG 242
Query 229 QLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQG 284
+ GQ +Q VTK+SA E + KPRQKRT K V Q FG+RGP Q
Sbjct 243 K------DAGQPKQ---VTKQSAKEVRQKILTKPRQKRTPNKQCPVQQCFGKRGPNQ--- 290
Query 285 NFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM---------EVTPSGTWLTYTG 335
NFG E+++ GT +P +A+ AP+ SAFF S++ + E T L Y+G
Sbjct 291 NFGGSEMLKLGTSDPQFPILAELAPTPSAFFFGSKLELVKKNSGGADEPTKDVYELQYSG 350
Query 336 AIKLDDKDPNFKDQVILLNKHIDAYK 361
AI+ D P F+ + +L ++++AY+
Sbjct 351 AIRFDSTLPGFETIMKVLTENLNAYQ 376
>sp|Q8JSP4|NCAP_CVPIA Nucleoprotein OS=Porcine hemagglutinating
encephalomyelitis virus (strain IAF-404) OX=230236 GN=N PE=3
SV=1
Length=449
Score = 191 bits (486), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 133/334 (40%), Positives = 186/334 (56%), Gaps = 39/334 (12%)
Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108
SWF+ +TQ K ++ +F GQGVPI + GY+ R RR + DG + L PRW
Sbjct 64 SWFSGITQFQKGKEFEFAEGQGVPIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRW 123
Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGA-LNTPKDHIGTRNPANNAAIVLQLPQGTTL 167
YFYYLGTGP A YG + DG+ WVA+ A +NTP D I R+P+++ AI + P GT L
Sbjct 124 YFYYLGTGPHAKHQYGTDIDGVFWVASNQADINTPAD-IVDRDPSSDEAIPTRFPPGTVL 182
Query 168 PKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGS-SRGTSPARMA--GNGGDAA--LALL 222
P+G+Y EGS G S +SRS+SR+ N R + GS SR S R + G D A +A L
Sbjct 183 PQGYYIEGS-GRSAPNSRSTSRAPN--RAPSAGSRSRANSGNRTSTPGVTPDMADQIASL 239
Query 223 LLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQAFGRRG 278
+L +L + +K Q VTK++A E + KPRQKR+ K V Q FG+RG
Sbjct 240 VLAKLGKDATKP---------QQVTKQTAKEVRQKILNKPRQKRSPNKQCTVQQCFGKRG 290
Query 279 PEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM-----------EVTPS 327
P Q NFG E+++ GT +P +A+ AP+A AFF SR+ + E
Sbjct 291 PNQ---NFGGGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNPDEPQKD 347
Query 328 GTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYK 361
L Y GAI+ D F+ + +LN++++AY+
Sbjct 348 VYELRYNGAIRFDSTLSGFETIMKVLNQNLNAYQ 381
>sp|Q83360|NCAP_CVMDV Nucleoprotein OS=Murine coronavirus (strain
DVIM) OX=231423 GN=N PE=3 SV=1
Length=455
Score = 191 bits (486), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 125/326 (38%), Positives = 174/326 (53%), Gaps = 27/326 (8%)
Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108
SWF+ +TQ K ++ +F GQGVPI +Q GY+ R RR + DG+ K L PRW
Sbjct 67 SWFSGITQFQKGKEFQFADGQGVPIANGIPASEQKGYWYRHNRRSFKTPDGQQKQLLPRW 126
Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLP 168
YFYYLGTGP AG YG + +G+ WVA A + I R+P+++ AI + GT LP
Sbjct 127 YFYYLGTGPHAGATYGDSIEGVFWVANSQADTNTRSDIVERDPSSHEAIPTRFAPGTVLP 186
Query 169 KGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLN 228
+GFY EGS + AS S S N SS PA +A L+L +L
Sbjct 187 QGFYVEGSGRSAPASRSGSRSQSRGSNNRARSSSNQRQPASTVKPDMAEEIAALVLAKL- 245
Query 229 QLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQG 284
K +G+ +Q VTK+SA E + KPRQKRT K V Q FG+RGP Q
Sbjct 246 ---GKDAGQPKQ-----VTKQSAKEVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ--- 294
Query 285 NFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM---------EVTPSGTWLTYTG 335
NFG E+++ GT +P +A+ AP+ AFF S++ + E T L Y+G
Sbjct 295 NFGGSEMLKLGTSDPQFPILAELAPTPGAFFFGSKLELVKKNSGGVDEPTKDVYELLYSG 354
Query 336 AIKLDDKDPNFKDQVILLNKHIDAYK 361
AI+ D P F+ + +LN++++AY+
Sbjct 355 AIRFDSTLPGFETIMKVLNENLNAYQ 380
>sp|Q8BB23|NCAP_CVP67 Nucleoprotein OS=Porcine hemagglutinating
encephalomyelitis virus (strain 67N) OX=230237 GN=N PE=3 SV=1
Length=449
Score = 191 bits (485), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 133/334 (40%), Positives = 186/334 (56%), Gaps = 39/334 (12%)
Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108
SWF+ +TQ K ++ +F GQGVPI + GY+ R RR + DG + L PRW
Sbjct 64 SWFSGITQFQKGKEFEFAEGQGVPIAPGVPSTEAKGYWYRHNRRSFKTADGNQRQLLPRW 123
Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGA-LNTPKDHIGTRNPANNAAIVLQLPQGTTL 167
YFYYLGTGP A YG + DG+ WVA+ A +NTP D I R+P+++ AI + P GT L
Sbjct 124 YFYYLGTGPHAKDQYGTDIDGVFWVASNQADINTPAD-IVDRDPSSDEAIPTRFPPGTVL 182
Query 168 PKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGS-SRGTSPARMA--GNGGDAA--LALL 222
P+G+Y EGS G S +SRS+SR+ N R + GS SR S R + G D A +A L
Sbjct 183 PQGYYIEGS-GRSAPNSRSTSRAPN--RAPSAGSRSRANSGNRTSTPGVTPDMADQIASL 239
Query 223 LLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQAFGRRG 278
+L +L + +K Q VTK++A E + KPRQKR+ K V Q FG+RG
Sbjct 240 VLAKLGKDATKP---------QQVTKQTAKEVRQKILNKPRQKRSPNKQCTVQQCFGKRG 290
Query 279 PEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM-----------EVTPS 327
P Q NFG E+++ GT +P +A+ AP+A AFF SR+ + E
Sbjct 291 PNQ---NFGGGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNPDEPQKD 347
Query 328 GTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYK 361
L Y GAI+ D F+ + +LN++++AY+
Sbjct 348 VYELRYNGAIRFDSTLSGFETIMKVLNQNLNAYQ 381
>sp|Q02915|NCAP_CVRSD Nucleoprotein OS=Rat coronavirus (strain
681) OX=33740 GN=N PE=3 SV=1
Length=454
Score = 189 bits (481), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 131/362 (36%), Positives = 186/362 (51%), Gaps = 33/362 (9%)
Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNNTAS------WFTALTQHGK-EDLKFPRGQGVP 73
+D T QN G R++ ++ NT S WF+ +TQ K ++ +F GQGVP
Sbjct 31 ADQTERGQNNGNRGRRNQPKQTATTQPNTGSVVPHYSWFSGITQFQKGKEFQFAGGQGVP 90
Query 74 INTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIW 132
I P +Q GY+ R RR + DG+ K L PRWYFYYLGTGP AG +G + +G+ W
Sbjct 91 IANGIPPSEQKGYWYRHNRRSFKTPDGQQKQLLPRWYFYYLGTGPHAGASFGDSIEGVFW 150
Query 133 VATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRN 192
VA A I R+P+++ AI + GT LP+GFY EGS + AS S
Sbjct 151 VANSQADTNTSADIVERDPSSHEAIPTRFAPGTVLPQGFYVEGSGRSAPASRSGSRSQSR 210
Query 193 SSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAA 252
N SS PA +A L+L +L K +G+ +Q VTK+SA
Sbjct 211 GPNNRARSSSNQRQPASTVKPDMAEEIAALVLAKL----GKDAGQPKQ-----VTKQSAK 261
Query 253 EASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFA 308
E + KPRQKRT K V Q FG+RGP Q NFG E+++ GT +P +A+ A
Sbjct 262 EVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGPEMLKLGTSDPQFPILAELA 318
Query 309 PSASAFFGMSRIGM---------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDA 359
P+ AFF S++ + E T L Y+GA++ D P F+ + +LN++++A
Sbjct 319 PTPGAFFFGSKLELVKKNSGGVDEPTKDVYELQYSGAVRFDSTLPGFETIMKVLNENLNA 378
Query 360 YK 361
Y+
Sbjct 379 YQ 380
>sp|Q9WCD0|NCAP_CVRNJ Nucleoprotein OS=Rat coronavirus (strain
NJ) OX=231433 GN=N PE=3 SV=1
Length=454
Score = 189 bits (481), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 124/326 (38%), Positives = 172/326 (53%), Gaps = 27/326 (8%)
Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108
SWF+ +TQ K ++ +F GQGVPI +Q GY+ R RR + DG+ K L PRW
Sbjct 67 SWFSGITQFQKGKEFQFADGQGVPIANGIPATEQKGYWYRHNRRSFKTPDGQQKQLLPRW 126
Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLP 168
YFYYLGTGP AG YG + +G+ WVA A + I R+P+++ AI + GT LP
Sbjct 127 YFYYLGTGPHAGAIYGDSIEGVFWVANSQADTNTRADIVERDPSSHEAIPTRFAPGTVLP 186
Query 169 KGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLN 228
+GFY EGS + AS S N SS PA +A L+L +L
Sbjct 187 QGFYVEGSGRSAPASRSGSRSQSRGPSNRARSSSNQRQPASTVKPDMAEEIAALVLAKLG 246
Query 229 QLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQG 284
+ GQ +Q VTK+SA E + KPRQKRT K V Q FG+RGP Q
Sbjct 247 K------DAGQPKQ---VTKQSAKEVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ--- 294
Query 285 NFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM---------EVTPSGTWLTYTG 335
NFG E+++ GT +P +A+ AP+ AFF S++ + E T L Y+G
Sbjct 295 NFGGSEMLKLGTSDPQFPILAELAPTPGAFFFGSKLELVKKNSGGADEPTKDVYELQYSG 354
Query 336 AIKLDDKDPNFKDQVILLNKHIDAYK 361
AI+ D P F+ + +LN++++AY+
Sbjct 355 AIRFDSTLPGFETIMKVLNENLNAYQ 380
>sp|Q9DQX6|NCAP_CVEN9 Nucleoprotein OS=Equine coronavirus (isolate
NC99) OX=202496 GN=N PE=3 SV=1
Length=446
Score = 186 bits (473), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 133/362 (37%), Positives = 191/362 (53%), Gaps = 47/362 (13%)
Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108
SWF+ +TQ K ++ +F GQGVPI + GY+ R RR + DG + L PRW
Sbjct 63 SWFSGITQFQKGKEFQFAEGQGVPIAPGIPATEAKGYWYRHNRRSFKTADGNQRQLLPRW 122
Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGA-LNTPKDHIGTRNPANNAAIVLQLPQGTTL 167
YFYYLGTGP A YG N DG+ WVA + A +NTP D + R+P+++ AI + P GT L
Sbjct 123 YFYYLGTGPHAKAQYGTNIDGVFWVANKQADVNTPADVV-DRDPSSDEAIPTRFPPGTVL 181
Query 168 PKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNG--GDAA--LALLL 223
P+G+Y EGS G + S+ +S +S +R S R +G D A +A L+
Sbjct 182 PQGYYIEGS--GRSVPNSRSTSRASSRASSAGSRNRSNSGTRTPTSGVTSDMADQIASLV 239
Query 224 LDRLNQLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQAFGRRGP 279
L +L + +K Q VTK++A E + KPRQKR+ K V Q FG+RGP
Sbjct 240 LAKLGKDATKP---------QQVTKQTAKEVRQKILNKPRQKRSPNKQCTVQQCFGKRGP 290
Query 280 EQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTP--SGTW------- 330
Q NFG E+++ GT +P +A+ AP+A AFF SR+ + SG +
Sbjct 291 NQ---NFGGAEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNFDEPQKDV 347
Query 331 --LTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQALPQRQKK 388
L Y GAI+ D P F+ + +LN++++AY+ ++ PQRQ+
Sbjct 348 YELRYNGAIRFDSTLPGFETIMKVLNENLNAYQ----------QQDDGTNMSPKPQRQRG 397
Query 389 QQ 390
QQ
Sbjct 398 QQ 399
>sp|Q9QAR1|NCAP_CVBLS Nucleoprotein OS=Bovine coronavirus (strain
LSU-94LSS-051) OX=233261 GN=N PE=3 SV=1
Length=448
Score = 177 bits (448), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 130/339 (38%), Positives = 182/339 (54%), Gaps = 49/339 (14%)
Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108
SWF+ +TQ K ++ +F GQGVPI + GY+ R RR + DG + L PRW
Sbjct 64 SWFSGITQFQKGKEFEFAEGQGVPIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRW 123
Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGA-LNTPKDHIGTRNPANNAAIVLQLPQGTTL 167
YFYYLGTGP A YG + DG+ WVA+ A +NTP D I R+P+++ AI + P GT L
Sbjct 124 YFYYLGTGPHAKDQYGTDIDGVFWVASNQADVNTPAD-ILDRDPSSDEAIPTRFPPGTVL 182
Query 168 PKGFYAEGS----------RGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDA 217
P+G+Y EGS S +S + SRSR +S N TP S G +P MA
Sbjct 183 PQGYYIEGSGRSAPNSRSTSRTSSRASSAGSRSRANSGNRTPTS--GVTP-DMADQ---- 235
Query 218 ALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQA 273
+A L+L +L + +K Q VTK++A E + KPRQKR+ K V Q
Sbjct 236 -IASLVLAKLGKDATK---------PQQVTKQTAKEIRQKILNKPRQKRSPNKQCTVQQC 285
Query 274 FGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM----------- 322
FG+RGP Q NFG E+++ GT +P +A+ AP+A AFF SR+ +
Sbjct 286 FGKRGPNQ---NFGGGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNLD 342
Query 323 EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYK 361
E L Y GAI+ D F+ + +LN++++AY+
Sbjct 343 EPQKDVYELRYNGAIRFDSTLSGFETIMKVLNENLNAYQ 381
>sp|P26020|NCAP_CVBOK Nucleoprotein OS=Bovine coronavirus (strain
OK-0514) OX=231432 GN=N PE=3 SV=1
Length=448
Score = 176 bits (447), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 130/339 (38%), Positives = 182/339 (54%), Gaps = 49/339 (14%)
Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108
SWF+ +TQ K ++ +F GQGVPI + GY+ R RR + DG + L PRW
Sbjct 64 SWFSGITQFQKGKEFEFAEGQGVPIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRW 123
Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGA-LNTPKDHIGTRNPANNAAIVLQLPQGTTL 167
YFYYLGTGP A YG + DG+ WVA+ A +NTP D I R+P+++ AI + P GT L
Sbjct 124 YFYYLGTGPHAKDQYGTDIDGVFWVASNQADVNTPAD-ILDRDPSSDEAIPTRFPPGTVL 182
Query 168 PKGFYAEGS----------RGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDA 217
P+G+Y EGS S +S + SRSR +S N TP S G +P MA
Sbjct 183 PQGYYIEGSGRSAPNSRSTSRASSRASSAGSRSRANSGNRTPTS--GVTPD-MADQ---- 235
Query 218 ALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQA 273
+A L+L +L + +K Q VTK++A E + KPRQKR+ K V Q
Sbjct 236 -IASLVLAKLGKDATK---------PQQVTKQTAKEIRQKILNKPRQKRSPNKQCTVQQC 285
Query 274 FGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM----------- 322
FG+RGP Q NFG E+++ GT +P +A+ AP+A AFF SR+ +
Sbjct 286 FGKRGPNQ---NFGGGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNLD 342
Query 323 EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYK 361
E L Y GAI+ D F+ + +LN++++AY+
Sbjct 343 EPQKDVYELRYNGAIRFDSTLSGFETIMKVLNENLNAYQ 381
>sp|P59712|NCAP_CVBQ Nucleoprotein OS=Bovine coronavirus (strain
Quebec) OX=11133 GN=N PE=3 SV=1
Length=448
Score = 176 bits (447), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 130/339 (38%), Positives = 182/339 (54%), Gaps = 49/339 (14%)
Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108
SWF+ +TQ K ++ +F GQGVPI + GY+ R RR + DG + L PRW
Sbjct 64 SWFSGITQFQKGKEFEFAEGQGVPIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRW 123
Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGA-LNTPKDHIGTRNPANNAAIVLQLPQGTTL 167
YFYYLGTGP A YG + DG+ WVA+ A +NTP D I R+P+++ AI + P GT L
Sbjct 124 YFYYLGTGPHAKDQYGTDIDGVFWVASNQADVNTPAD-ILDRDPSSDEAIPTRFPPGTVL 182
Query 168 PKGFYAEGS----------RGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDA 217
P+G+Y EGS S +S + SRSR +S N TP S G +P MA
Sbjct 183 PQGYYIEGSGRSAPNSRSTSRASSRASSAGSRSRANSGNRTPTS--GVTPD-MADQ---- 235
Query 218 ALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQA 273
+A L+L +L + +K Q VTK++A E + KPRQKR+ K V Q
Sbjct 236 -IASLVLAKLGKDATK---------PQQVTKQTAKEIRQKILNKPRQKRSPNKQCTVQQC 285
Query 274 FGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM----------- 322
FG+RGP Q NFG E+++ GT +P +A+ AP+A AFF SR+ +
Sbjct 286 FGKRGPNQ---NFGGGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNLD 342
Query 323 EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYK 361
E L Y GAI+ D F+ + +LN++++AY+
Sbjct 343 EPQKDVYELRYNGAIRFDSTLSGFETIMKVLNENLNAYQ 381
>sp|P10527|NCAP_CVBM Nucleoprotein OS=Bovine coronavirus (strain
Mebus) OX=11132 GN=N PE=1 SV=1
Length=448
Score = 176 bits (447), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 130/339 (38%), Positives = 182/339 (54%), Gaps = 49/339 (14%)
Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108
SWF+ +TQ K ++ +F GQGVPI + GY+ R RR + DG + L PRW
Sbjct 64 SWFSGITQFQKGKEFEFAEGQGVPIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRW 123
Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGA-LNTPKDHIGTRNPANNAAIVLQLPQGTTL 167
YFYYLGTGP A YG + DG+ WVA+ A +NTP D I R+P+++ AI + P GT L
Sbjct 124 YFYYLGTGPHAKDQYGTDIDGVFWVASNQADVNTPAD-ILDRDPSSDEAIPTRFPPGTVL 182
Query 168 PKGFYAEGS----------RGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDA 217
P+G+Y EGS S +S + SRSR +S N TP S G +P MA
Sbjct 183 PQGYYIEGSGRSAPNSRSTSRASSRASSAGSRSRANSGNRTPTS--GVTPD-MADQ---- 235
Query 218 ALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQA 273
+A L+L +L + +K Q VTK++A E + KPRQKR+ K V Q
Sbjct 236 -IASLVLAKLGKDATK---------PQQVTKQTAKEIRQKILNKPRQKRSPNKQCTVQQC 285
Query 274 FGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM----------- 322
FG+RGP Q NFG E+++ GT +P +A+ AP+A AFF SR+ +
Sbjct 286 FGKRGPNQ---NFGGGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNLD 342
Query 323 EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYK 361
E L Y GAI+ D F+ + +LN++++AY+
Sbjct 343 EPQKDVYELRYNGAIRFDSTLSGFETIMKVLNENLNAYQ 381
>sp|Q9QAR8|NCAP_CVBLY Nucleoprotein OS=Bovine coronavirus (strain
LY-138) OX=11131 GN=N PE=3 SV=1
Length=448
Score = 176 bits (447), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 130/339 (38%), Positives = 181/339 (53%), Gaps = 49/339 (14%)
Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108
SWF+ +TQ K ++ +F GQGVPI + GY+ R RR + DG + L PRW
Sbjct 64 SWFSGITQFQKGKEFEFAEGQGVPIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRW 123
Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGA-LNTPKDHIGTRNPANNAAIVLQLPQGTTL 167
YFYYLGTGP A YG + DG+ WVA+ A +NTP D I R+P+++ AI + P GT L
Sbjct 124 YFYYLGTGPHAKDQYGTDIDGVFWVASNQADVNTPAD-ILDRDPSSDEAIPTRFPPGTVL 182
Query 168 PKGFYAEGS----------RGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDA 217
P+G+Y EGS S +S + SRSR S N TP S G +P MA
Sbjct 183 PQGYYIEGSGRSAPNSRSTSRASSRASSAGSRSRADSGNRTPTS--GVTP-DMADQ---- 235
Query 218 ALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQA 273
+A L+L +L + +K Q VTK++A E + KPRQKR+ K V Q
Sbjct 236 -IASLVLAKLGKDATK---------PQQVTKQTAKEIRQKILNKPRQKRSPNKQCTVQQC 285
Query 274 FGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM----------- 322
FG+RGP Q NFG E+++ GT +P +A+ AP+A AFF SR+ +
Sbjct 286 FGKRGPNQ---NFGGGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNLD 342
Query 323 EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYK 361
E L Y GAI+ D F+ + +LN++++AY+
Sbjct 343 EPQKDVYELRYNGAIRFDSTLSGFETIMKVLNENLNAYQ 381
>sp|Q91A22|NCAP_CVBEN Nucleoprotein OS=Bovine coronavirus (strain
98TXSF-110-ENT) OX=233262 GN=N PE=3 SV=1
Length=448
Score = 176 bits (446), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 132/339 (39%), Positives = 183/339 (54%), Gaps = 49/339 (14%)
Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108
SWF+ +TQ K ++ +F GQGVPI + GY+ R RR + DG + L PRW
Sbjct 64 SWFSGITQFQKGKEFEFAEGQGVPIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRW 123
Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGA-LNTPKDHIGTRNPANNAAIVLQLPQGTTL 167
YFYYLGTGP A YG + DG+ WVA+ A +NTP D I R+P+++ AI + P GT L
Sbjct 124 YFYYLGTGPHAKDQYGTDIDGVYWVASNQADVNTPAD-ILDRDPSSDEAIPTRFPPGTVL 182
Query 168 PKGFYAEGS----------RGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDA 217
P+G+Y EGS S +S + SRSR +S N TP S G +P MA
Sbjct 183 PQGYYIEGSGRSAPNSRSTSRASSRASSAGSRSRANSGNRTPTS--GVTP-DMADQ---- 235
Query 218 ALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQA 273
+A L+L +L K + K QQ VTK++A E + KPRQKR+ K V Q
Sbjct 236 -IASLVLAKL----GKDAAKPQQ-----VTKQTAKEIRQKILNKPRQKRSPNKQCTVQQC 285
Query 274 FGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM----------- 322
FG+RGP Q NFG E+++ GT +P +A+ AP+A AFF SR+ +
Sbjct 286 FGKRGPNQ---NFGGGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNLD 342
Query 323 EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYK 361
E L Y GAI+ D F+ + +LN++++AY+
Sbjct 343 EPQKDVYELRYNGAIRFDSTLSGFETIMKVLNENLNAYQ 381
>sp|Q8V432|NCAP_CVBLU Nucleoprotein OS=Bovine coronavirus (strain
98TXSF-110-LUN) OX=233264 GN=N PE=3 SV=1
Length=448
Score = 176 bits (446), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 132/339 (39%), Positives = 183/339 (54%), Gaps = 49/339 (14%)
Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108
SWF+ +TQ K ++ +F GQGVPI + GY+ R RR + DG + L PRW
Sbjct 64 SWFSGITQFQKGKEFEFAEGQGVPIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRW 123
Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGA-LNTPKDHIGTRNPANNAAIVLQLPQGTTL 167
YFYYLGTGP A YG + DG+ WVA+ A +NTP D I R+P+++ AI + P GT L
Sbjct 124 YFYYLGTGPHAKDQYGTDIDGVYWVASNQADVNTPAD-ILDRDPSSDEAIPTRFPPGTVL 182
Query 168 PKGFYAEGS----------RGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDA 217
P+G+Y EGS S +S + SRSR +S N TP S G +P MA
Sbjct 183 PQGYYIEGSGRSAPNSRSTSRASSRASSAGSRSRANSGNRTPTS--GVTP-DMADQ---- 235
Query 218 ALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQA 273
+A L+L +L K + K QQ VTK++A E + KPRQKR+ K V Q
Sbjct 236 -IASLVLAKL----GKDAAKPQQ-----VTKQTAKEIRQKILNKPRQKRSPNKQCTVQQC 285
Query 274 FGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM----------- 322
FG+RGP Q NFG E+++ GT +P +A+ AP+A AFF SR+ +
Sbjct 286 FGKRGPNQ---NFGGGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNLD 342
Query 323 EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYK 361
E L Y GAI+ D F+ + +LN++++AY+
Sbjct 343 EPQKDVYELRYNGAIRFDSTLSGFETIMKVLNENLNAYQ 381
>sp|P19902|NCAP_CVBF Nucleoprotein OS=Bovine coronavirus (strain
F15) OX=11129 GN=N PE=3 SV=1
Length=448
Score = 175 bits (443), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 124/329 (38%), Positives = 177/329 (54%), Gaps = 29/329 (9%)
Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108
SWF+ +TQ K ++ +F GQGVPI + GY+ R RR + DG + L PRW
Sbjct 64 SWFSGITQFQKGKEFEFAEGQGVPIAPGVPATEAKGYWYRHNRRSFKTRDGNQRQLLPRW 123
Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGA-LNTPKDHIGTRNPANNAAIVLQLPQGTTL 167
YFYYLGTGP A YG + DG+ WVA+ A +NTP D I R+P+++ AI + P GT L
Sbjct 124 YFYYLGTGPHAKDQYGTDIDGVFWVASNQADVNTPAD-ILDRDPSSDEAIPTRFPPGTVL 182
Query 168 PKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRL 227
P+G+Y EGS G A + S+ +S +S SR S R +G +A ++ +
Sbjct 183 PQGYYIEGS--GRSAPNSRSTSRASSRASSAGSRSRANSGNRTPTSGVTPDMADQIVSLV 240
Query 228 NQLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQ 283
K + K QQ VTK++A E + KPRQKR+ K V Q FG+RGP Q
Sbjct 241 LAKLGKDATKPQQ-----VTKQTAKEIRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ-- 293
Query 284 GNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM-----------EVTPSGTWLT 332
NFG E+++ GT +P +A+ AP+A AFF SR+ + E L
Sbjct 294 -NFGGGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNLDEPQKDVYELR 352
Query 333 YTGAIKLDDKDPNFKDQVILLNKHIDAYK 361
Y GAI+ D F+ + +LN++++AY+
Sbjct 353 YNGAIRFDSTLSGFETIMKVLNENLNAYQ 381
>sp|P33469|NCAP_CVHOC Nucleoprotein OS=Human coronavirus OC43
OX=31631 GN=N PE=1 SV=1
Length=448
Score = 170 bits (431), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 128/339 (38%), Positives = 179/339 (53%), Gaps = 49/339 (14%)
Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATR-RIRGGDGKMKDLSPRW 108
SWF+ +TQ K ++ +F GQG PI + GY+ R R + DG + L PRW
Sbjct 64 SWFSGITQFQKGKEFEFVEGQGPPIAPGVPATEAKGYWYRHNRGSFKTADGNQRQLLPRW 123
Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGA-LNTPKDHIGTRNPANNAAIVLQLPQGTTL 167
YFYYLGTGP A YG + DG+ WVA+ A +NTP D I R+P+++ AI + P GT L
Sbjct 124 YFYYLGTGPHAKDQYGTDIDGVYWVASNQADVNTPAD-IVDRDPSSDEAIPTRFPPGTVL 182
Query 168 PKGFYAEGS----------RGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDA 217
P+G+Y EGS S +S + SRSR +S N TP S G +P MA
Sbjct 183 PQGYYIEGSGRSAPNSRSTSRTSSRASSAGSRSRANSGNRTPTS--GVTP-DMADQ---- 235
Query 218 ALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQA 273
+A L+L +L + +K Q VTK +A E + KPRQKR+ K V Q
Sbjct 236 -IASLVLAKLGKDATKP---------QQVTKHTAKEVRQKILNKPRQKRSPNKQCTVQQC 285
Query 274 FGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM----------- 322
FG+RGP Q NFG E+++ GT +P +A+ AP+A AFF SR+ +
Sbjct 286 FGKRGPNQ---NFGGGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNPD 342
Query 323 EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYK 361
E L Y GAI+ D F+ + +LN++++AY+
Sbjct 343 EPQKDVYELRYNGAIRFDSTLSGFETIMKVLNENLNAYQ 381
>sp|Q9PZ50|NCAP_CVTMI Nucleoprotein OS=Turkey coronavirus (strain
Minnesota) OX=231430 GN=N PE=3 SV=1
Length=409
Score = 121 bits (304), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 150/336 (45%), Gaps = 24/336 (7%)
Query 50 ASWFTALT--QHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPR 107
ASWF A+ + KF G GVP N N P Q GY+RR R + G K +
Sbjct 33 ASWFQAIKAKKLNSPPPKF-EGSGVPDNENLKPGQQHGYWRRQAR-FKPSKGGRKPVPDA 90
Query 108 WYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTL 167
WYFYY GTGP A L +G ++DGI+WVA +GA + + GTR+P L+ G
Sbjct 91 WYFYYTGTGPAADLNWGDSQDGIVWVAAKGADVKSRSNQGTRDPDKFDQYPLRFSDG--- 147
Query 168 PKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRL 227
G G + +R R+ + ++ +P+R G + L+ R
Sbjct 148 -------GPDGNFRWDFIPLNRGRSGRSTAASSAASTRAPSREGSRGRRSGSEDDLIARA 200
Query 228 NQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFG 287
++ + QQ++G +TK A E + + KRT Y V Q FG R + +GNFG
Sbjct 201 AKII-----QDQQRKGSRITKAKADEMAHRRYCKRTIPPGYKVDQVFGPRT-KGKEGNFG 254
Query 288 DQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFK 347
D ++ +G + PS+ A SR+ ++ P G L + + DP F
Sbjct 255 DDKMNEEGITDGRVTAMLNLVPSSHACLFGSRVTPKLQPDGLHLKFEFTTVVPRDDPQFD 314
Query 348 DQVILLNKHIDAYKTFPPTEPKKDKKKKADETQALP 383
+ V + ++ ID T PK D+ K + + P
Sbjct 315 NYVKICDQCIDGVG----TRPKDDEPKPKSRSSSRP 346
>sp|P25909|NCAP_FIPV Nucleoprotein OS=Feline coronavirus (strain
FIPV WSU-79/1146) OX=33734 GN=N PE=1 SV=1
Length=377
Score = 120 bits (300), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 102/320 (32%), Positives = 165/320 (52%), Gaps = 27/320 (8%)
Query 81 DDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALN 140
D QIGY+ R R R G+ K+L+ RW+FY+LGTGP A + DG+ WVA +GA+N
Sbjct 64 DQQIGYWNRQIR-YRIVKGQRKELAERWFFYFLGTGPHADAKFKDKIDGVFWVARDGAMN 122
Query 141 TPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPG 200
P +GTR NN + L+ +P F E +R S+ +SRS S+SR+ SRN +
Sbjct 123 KPT-TLGTRG-TNNESKPLRF--DGKIPPQFQLEVNR--SRNNSRSGSQSRSVSRNRS-- 174
Query 201 SSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQ 260
SRG + N + + + +L++L + + S +++ + + + + + K
Sbjct 175 QSRGRHHSNNQNNNVEDTI-VAVLEKLGVTDKQRSRSKPRERSDSKPRDTTPKNANKHTW 233
Query 261 KRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRI 320
K+TA K +VT +G R + NFGD +L+ G K +PQIA+ PS S+ S+
Sbjct 234 KKTAGKG-DVTTFYGARS---SSANFGDSDLVANGNAAKCYPQIAECVPSVSSIIFGSQW 289
Query 321 GMEVTPSGTWLTYTGAIKL---DDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKAD 377
E +T T L D K F +Q IDAYK P+E KD++++
Sbjct 290 SAEEAGDQVKVTLTHTYYLPKDDAKTSQFLEQ-------IDAYKR--PSEVAKDQRQRRS 340
Query 378 ETQALPQRQKKQQTVTLLPA 397
+++ ++ ++ +VTL+ A
Sbjct 341 RSKS-ADKKPEELSVTLVEA 359
>sp|Q96598|NCAP_IBVVI Nucleoprotein OS=Avian infectious bronchitis
virus (strain Vic S) OX=231428 GN=N PE=2 SV=1
Length=409
Score = 119 bits (299), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 97/317 (31%), Positives = 142/317 (45%), Gaps = 20/317 (6%)
Query 50 ASWFTALTQHGKEDLKFPR--GQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPR 107
ASWF A+ K ++ P+ G GVP N N P Q GY+RR R G G+ K +
Sbjct 33 ASWFQAIKAK-KLNVPQPKFEGSGVPDNNNIKPSQQHGYWRRQARYKPGKSGR-KPVPDA 90
Query 108 WYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTL 167
WYFYY GTGP A L +G N+DGI+WVA +GA + + GTR+P L+
Sbjct 91 WYFYYTGTGPAADLNWGENQDGIVWVAAKGADTKSRSNQGTRDPDKFDQYPLRF------ 144
Query 168 PKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRL 227
S GG + R N R+ ++ + +R G D L
Sbjct 145 --------SDGGPDGNFRWDFIPLNRGRSGRSTAASSAASSRAPSREGSRGRRSGAEDDL 196
Query 228 NQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFG 287
+K+ + QQ++G +TK A E + + KRT Y V Q FG R + +GNFG
Sbjct 197 IARAAKII-QDQQKRGSRITKAKADEMAHRRYCKRTIPPGYRVDQVFGPRT-KGKEGNFG 254
Query 288 DQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFK 347
D ++ +G PS+ A SR+ ++ P G L + + DP F
Sbjct 255 DDKMNEEGIKDGRVTATLNLIPSSHACLFGSRVTPKLQPDGLHLKFEFTTVVPRDDPQFD 314
Query 348 DQVILLNKHIDAYKTFP 364
+ V + ++ +D T P
Sbjct 315 NYVKICDQCVDGVGTRP 331
>sp|P12648|NCAP_IBVK Nucleoprotein OS=Avian infectious bronchitis
virus (strain KB8523) OX=11126 GN=N PE=3 SV=1
Length=409
Score = 119 bits (297), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 147/327 (45%), Gaps = 20/327 (6%)
Query 50 ASWFTALT--QHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPR 107
ASWF A+ + LKF G GVP N N Q GY+RR R + G K +
Sbjct 33 ASWFQAIKAKKLNSPPLKF-EGSGVPDNENLKTSQQHGYWRRQAR-FKPSKGGRKPVPDA 90
Query 108 WYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTL 167
WYFYY GTGP A L +G ++DGI+WVA +GA + + GTR+P L+ G
Sbjct 91 WYFYYTGTGPAADLNWGDSQDGIVWVAAKGADTKSRSNQGTRDPDKFDQYPLRFSDG--- 147
Query 168 PKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRL 227
G G + +R R+ + ++ +P+R G + L+ R
Sbjct 148 -------GPDGNFRWDFIPLNRGRSGKSTAASSAASSRAPSREGSRGRRSGAEDDLIARA 200
Query 228 NQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFG 287
++ + QQ++G +TK A E + + KRT Y V Q FG R + +GNFG
Sbjct 201 AKII-----QDQQKKGARITKAKADEMAHRRYCKRTIPPGYKVDQVFGPRT-KGKEGNFG 254
Query 288 DQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFK 347
D ++ +G + PS+ A SR+ ++ P G L + + DP F
Sbjct 255 DDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQPDGLHLKFEFTTVVSRNDPQFD 314
Query 348 DQVILLNKHIDAYKTFPPTEPKKDKKK 374
+ V + ++ +D T P + K K +
Sbjct 315 NYVKICDQCVDGVGTRPKDDEPKPKSR 341
>sp|Q96605|NCAP_IBVV1 Nucleoprotein OS=Avian infectious bronchitis
virus (strain V18/91) OX=231427 GN=N PE=2 SV=1
Length=409
Score = 118 bits (295), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 93/346 (27%), Positives = 158/346 (46%), Gaps = 25/346 (7%)
Query 50 ASWFTALTQHGKEDLKFP---RGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSP 106
ASWF +L + K+ P G GVP N+N P Q GY++R R + G G K ++
Sbjct 34 ASWFQSLKE--KKRTGTPPTFEGSGVPDNSNVKPQFQHGYWKR-QHRYKPGKGGRKPVAD 90
Query 107 RWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTT 166
WYFYY GTGP L +G + D ++WV +GA + + G R+P L+ +G
Sbjct 91 AWYFYYTGTGPFGDLKWGDSNDDVVWVKAKGADTSKIGNYGVRDPDKFDQAPLRFTEGG- 149
Query 167 LPKGFYAEGSRGGSQASSRSSS--RSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLL 224
P Y ++ SR+SS SR +SR + SSRG +R+ + D A +++
Sbjct 150 -PDNNYRWDFIALNRGRSRNSSAVTSRENSRPGSRDSSRGRQRSRVDDDLIDRAAKIIMQ 208
Query 225 DRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQG 284
QQ+ G ++K+ A E +++ KR + + FG+R Q
Sbjct 209 --------------QQKNGSRISKQKANEMAERKYHKRAIAPGKRIDEVFGQRRKGQAP- 253
Query 285 NFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDP 344
NFGD ++I +G + P+ A S + ++ P G + ++ + +DP
Sbjct 254 NFGDDKMIEEGVKDGRLTAMLNLVPTPHACLLGSMVTAKLQPDGLHVRFSFETVVKREDP 313
Query 345 NFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQ 390
F + + ++ +D T P +P + + + + P K+Q+
Sbjct 314 QFANYSKICDECVDGVGTRPKDDPTPRSRAASKDRNSAPATPKQQR 359
>sp|P32923|NCAP_IBVG Nucleoprotein OS=Avian infectious bronchitis
virus (strain Gray) OX=31624 GN=N PE=1 SV=2
Length=409
Score = 117 bits (292), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 106/361 (29%), Positives = 154/361 (43%), Gaps = 40/361 (11%)
Query 12 APRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALT--QHGKEDLKFPRG 69
AP I GGP R P+ + ASWF A+ + KF G
Sbjct 14 APVIKLGGP-------------------RPPKVGSSGNASWFQAIKAKKLNSPQPKF-EG 53
Query 70 QGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDG 129
GVP N N Q GY+RR R + G G+ K + WYFYY GTGP A L +G ++DG
Sbjct 54 SGVPDNENFKTSQQHGYWRRQAR-FKPGKGRRKPVPDAWYFYYTGTGPAADLNWGDSQDG 112
Query 130 IIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSR 189
I+WVA +GA + + GTR+P L+ S GG + R
Sbjct 113 IVWVAAKGADVKSRSNQGTRDPDKFDQYPLRF--------------SDGGPDGNFRWDFI 158
Query 190 SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKK 249
N R+ ++ + +R G D L +K+ + QQ++G +TK
Sbjct 159 PLNRGRSGRSTAASSAASSRPPSREGSRGRRSGSEDDLIARAAKII-QDQQKKGSRITKA 217
Query 250 SAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAP 309
A E + + KRT Y V Q FG R + +GNFGD ++ +G + P
Sbjct 218 KADEMAHRRYCKRTIPPGYKVDQVFGPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVP 276
Query 310 SASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPP-TEP 368
S+ A SR+ ++ P G L + + DP F + V + ++ +D T P EP
Sbjct 277 SSHACLFGSRVTPKLQPDGLHLKFEFTTVVPRDDPQFDNYVKICDQCVDGVGTRPKDDEP 336
Query 369 K 369
K
Sbjct 337 K 337
>sp|Q8JMI6|NCAP_IBVSA Nucleoprotein OS=Avian infectious bronchitis
virus (strain SAIB20) OX=231426 GN=N PE=2 SV=1
Length=409
Score = 115 bits (288), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 106/361 (29%), Positives = 153/361 (42%), Gaps = 40/361 (11%)
Query 12 APRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALT--QHGKEDLKFPRG 69
AP I GGP R P+ + ASWF A+ + KF G
Sbjct 14 APVIKLGGP-------------------RPPKVGSSGNASWFQAIKAKKLNSPQPKF-EG 53
Query 70 QGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDG 129
GVP N N Q GY+RR R + G G K + WYFYY GTGP A L +G ++DG
Sbjct 54 SGVPDNENLKTSQQHGYWRRQAR-FKPGKGGRKPVPDAWYFYYTGTGPAADLNWGDSQDG 112
Query 130 IIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSR 189
I+WVA +GA + + GTR+P L+ S GG + R
Sbjct 113 IVWVAAKGADVKSRSNQGTRDPDKFDQYPLRF--------------SDGGPDGNFRWDFI 158
Query 190 SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKK 249
N R+ ++ + +R G D L +K+ + QQ++G +TK
Sbjct 159 PLNRGRSGRSTAASSAASSRPPSREGSRGRRSGSEDDLIARAAKII-QDQQKKGSRITKA 217
Query 250 SAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAP 309
A E + + KRT Y V Q FG R + +GNFGD ++ +G + P
Sbjct 218 KADEMAHRRYCKRTIPPGYKVDQVFGPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVP 276
Query 310 SASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPP-TEP 368
S+ A SR+ ++ P G L + + DP F + V + ++ +D T P EP
Sbjct 277 SSHACLFGSRVTPKLQPDGLHLKFEFTTVVPRDDPQFDNYVKICDQCVDGVGTRPKDDEP 336
Query 369 K 369
K
Sbjct 337 K 337
>sp|Q64960|NCAP_IBVAR Nucleoprotein OS=Avian infectious bronchitis
virus (strain Arkansas 99) OX=231471 GN=N PE=3 SV=1
Length=409
Score = 115 bits (287), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 141/319 (44%), Gaps = 24/319 (8%)
Query 50 ASWFTALT--QHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRR--IRGGDGKMKDLS 105
ASWF A+ + KF G GVP N N Q GY+RR R ++GG + D
Sbjct 33 ASWFQAIKAKKLNSHPPKF-EGSGVPDNENLKTSQQHGYWRRQARFKPVKGGRKPVPDA- 90
Query 106 PRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGT 165
WYFYY GTGP A L +G ++DGI+WVA +GA + H GTR+P L+
Sbjct 91 --WYFYYTGTGPAADLNWGDSQDGIVWVAAKGADVKSRSHQGTRDPDKFDQYPLRF---- 144
Query 166 TLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLD 225
S GG + R N R+ ++ + +R G D
Sbjct 145 ----------SDGGPDGNFRWDFIPLNRGRSGRSTAASSAASSRAPSRDGSRGRRSGSED 194
Query 226 RLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGN 285
L +K+ + QQ++G +TK A E + + KRT Y V Q FG R + +GN
Sbjct 195 DLIARAAKII-QDQQKKGSRITKVKADEMAHRRYCKRTIPPGYKVDQVFGPRT-KGKEGN 252
Query 286 FGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPN 345
FGD ++ +G + PS+ A SR+ ++ P G L + + DP
Sbjct 253 FGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQPDGLHLKFEFTTVVPRDDPQ 312
Query 346 FKDQVILLNKHIDAYKTFP 364
F + V + ++ +D T P
Sbjct 313 FDNYVKICDQCVDGVGTRP 331
>sp|Q9J4A3|NCAP_IBVD1 Nucleoprotein OS=Avian infectious bronchitis
virus (strain D1466) OX=231472 GN=N PE=3 SV=1
Length=409
Score = 115 bits (287), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 95/319 (30%), Positives = 140/319 (44%), Gaps = 24/319 (8%)
Query 50 ASWFTALTQHGKEDLKFP----RGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLS 105
ASWF AL + L P G GVP N N Q GY+RR R + G G K +
Sbjct 33 ASWFQALKA---KKLNSPPPKFEGSGVPDNENLKLSQQHGYWRRQAR-YKPGKGGRKSVP 88
Query 106 PRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGT 165
WYFYY GTGP A L +G ++DGI+WV+ +GA + + GTR+P L+
Sbjct 89 DAWYFYYTGTGPAADLNWGYSQDGIVWVSAKGADTKSRSNQGTRDPDKFDQYPLRF---- 144
Query 166 TLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLD 225
S GG + R N R+ ++ + +R G D
Sbjct 145 ----------SDGGPDGNFRWDFIPINRGRSGRSTAASSAASSRAPSRDGSRGRRSGAED 194
Query 226 RLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGN 285
L +K+ + QQ++G +TK A E + + KRT Y V Q FG R + +GN
Sbjct 195 DLIARAAKII-QDQQKKGSRITKAKADEMAHRRYCKRTIPPGYKVDQVFGPRT-KCKEGN 252
Query 286 FGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPN 345
FGD ++ +G + PS+ A SR+ ++ P G L + + DP
Sbjct 253 FGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQPDGLHLRFEFTTVVSRDDPQ 312
Query 346 FKDQVILLNKHIDAYKTFP 364
F + V + ++ +D T P
Sbjct 313 FDNYVKICDQCVDGVGTRP 331
>sp|Q98WJ7|NCAP_IBVH1 Nucleoprotein OS=Avian infectious bronchitis
virus (strain H120) OX=231424 GN=N PE=3 SV=1
Length=409
Score = 114 bits (285), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 95/319 (30%), Positives = 140/319 (44%), Gaps = 24/319 (8%)
Query 50 ASWFTALTQHGKEDLKFP----RGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLS 105
ASWF AL + L P G GVP N N Q GY+RR R + G G K +
Sbjct 33 ASWFQALKA---KKLNSPPPKFEGSGVPDNENLKLSQQHGYWRRQAR-YKPGKGGKKSVP 88
Query 106 PRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGT 165
WYFYY GTGP A L +G ++DGI+WV+ +GA + + GTR+P L+
Sbjct 89 DAWYFYYTGTGPAADLNWGDSQDGIVWVSAKGADTKSRSNQGTRDPDKFDQYPLRF---- 144
Query 166 TLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLD 225
S GG + R N R+ ++ + +R G D
Sbjct 145 ----------SDGGPDGNFRWDFIPINRGRSGRSTAASSAASSRAPSRDGSRGRRSGAED 194
Query 226 RLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGN 285
L +K+ + QQ++G +TK A E + + KRT Y V Q FG R + +GN
Sbjct 195 DLIARAAKII-QDQQKKGSRITKAKADEMAHRRYCKRTIPPGYKVDQVFGPRT-KGKEGN 252
Query 286 FGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPN 345
FGD ++ +G + PS+ A SR+ ++ P G L + + DP
Sbjct 253 FGDDKMNEEGIKDGRVIAMLNLVPSSHACLFGSRVTPKLQPDGLHLRFEFTTVVSRDDPQ 312
Query 346 FKDQVILLNKHIDAYKTFP 364
F + V + ++ +D T P
Sbjct 313 FDNYVKICDQCVDGVGTRP 331
>sp|P69598|NCAP_IBVBU Nucleoprotein OS=Avian infectious bronchitis
virus (strain Beaudette US) OX=160750 GN=N PE=1 SV=1
Length=409
Score = 114 bits (284), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/327 (30%), Positives = 144/327 (44%), Gaps = 20/327 (6%)
Query 50 ASWFTALTQHGKEDLKFPR--GQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPR 107
ASWF A+ K + P+ G GVP N N P Q GY+RR R + G G K +
Sbjct 33 ASWFQAIKAK-KLNTPPPKFEGSGVPDNENIKPSQQHGYWRRQAR-FKPGKGGRKPVPDA 90
Query 108 WYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTL 167
WYFYY GTGP A L +G +DGI+WVA +GA + + GTR+P L+
Sbjct 91 WYFYYTGTGPAADLNWGDTQDGIVWVAAKGADTKSRSNQGTRDPDKFDQYPLRF------ 144
Query 168 PKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRL 227
S GG + R N R+ ++ + +R G D L
Sbjct 145 --------SDGGPDGNFRWDFIPLNRGRSGRSTAASSAAASRAPSREGSRGRRSDSGDDL 196
Query 228 NQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFG 287
+K+ + QQ++G +TK A E + + KRT Y V Q FG R + +GNFG
Sbjct 197 IARAAKII-QDQQKKGSRITKAKADEMAHRRYCKRTIPPNYRVDQVFGPRT-KGKEGNFG 254
Query 288 DQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFK 347
D ++ +G + PS+ A SR+ ++ G L + + DP F
Sbjct 255 DDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQLDGLHLRFEFTTVVPCDDPQFD 314
Query 348 DQVILLNKHIDAYKTFPPTEPKKDKKK 374
+ V + ++ +D T P + K K +
Sbjct 315 NYVKICDQCVDGVGTRPKDDEPKPKSR 341
>sp|P69597|NCAP_IBVBC Nucleoprotein OS=Avian infectious bronchitis
virus (strain Beaudette CK) OX=160235 GN=N PE=1 SV=1
Length=409
Score = 114 bits (284), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/327 (30%), Positives = 144/327 (44%), Gaps = 20/327 (6%)
Query 50 ASWFTALTQHGKEDLKFPR--GQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPR 107
ASWF A+ K + P+ G GVP N N P Q GY+RR R + G G K +
Sbjct 33 ASWFQAIKAK-KLNTPPPKFEGSGVPDNENIKPSQQHGYWRRQAR-FKPGKGGRKPVPDA 90
Query 108 WYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTL 167
WYFYY GTGP A L +G +DGI+WVA +GA + + GTR+P L+
Sbjct 91 WYFYYTGTGPAADLNWGDTQDGIVWVAAKGADTKSRSNQGTRDPDKFDQYPLRF------ 144
Query 168 PKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRL 227
S GG + R N R+ ++ + +R G D L
Sbjct 145 --------SDGGPDGNFRWDFIPLNRGRSGRSTAASSAAASRAPSREGSRGRRSDSGDDL 196
Query 228 NQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFG 287
+K+ + QQ++G +TK A E + + KRT Y V Q FG R + +GNFG
Sbjct 197 IARAAKII-QDQQKKGSRITKAKADEMAHRRYCKRTIPPNYRVDQVFGPRT-KGKEGNFG 254
Query 288 DQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFK 347
D ++ +G + PS+ A SR+ ++ G L + + DP F
Sbjct 255 DDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQLDGLHLRFEFTTVVPCDDPQFD 314
Query 348 DQVILLNKHIDAYKTFPPTEPKKDKKK 374
+ V + ++ +D T P + K K +
Sbjct 315 NYVKICDQCVDGVGTRPKDDEPKPKSR 341
>sp|P69596|NCAP_IBVB Nucleoprotein OS=Avian infectious bronchitis
virus (strain Beaudette) OX=11122 GN=N PE=1 SV=1
Length=409
Score = 114 bits (284), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/327 (30%), Positives = 144/327 (44%), Gaps = 20/327 (6%)
Query 50 ASWFTALTQHGKEDLKFPR--GQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPR 107
ASWF A+ K + P+ G GVP N N P Q GY+RR R + G G K +
Sbjct 33 ASWFQAIKAK-KLNTPPPKFEGSGVPDNENIKPSQQHGYWRRQAR-FKPGKGGRKPVPDA 90
Query 108 WYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTL 167
WYFYY GTGP A L +G +DGI+WVA +GA + + GTR+P L+
Sbjct 91 WYFYYTGTGPAADLNWGDTQDGIVWVAAKGADTKSRSNQGTRDPDKFDQYPLRF------ 144
Query 168 PKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRL 227
S GG + R N R+ ++ + +R G D L
Sbjct 145 --------SDGGPDGNFRWDFIPLNRGRSGRSTAASSAAASRAPSREGSRGRRSDSGDDL 196
Query 228 NQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFG 287
+K+ + QQ++G +TK A E + + KRT Y V Q FG R + +GNFG
Sbjct 197 IARAAKII-QDQQKKGSRITKAKADEMAHRRYCKRTIPPNYRVDQVFGPRT-KGKEGNFG 254
Query 288 DQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFK 347
D ++ +G + PS+ A SR+ ++ G L + + DP F
Sbjct 255 DDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQLDGLHLRFEFTTVVPCDDPQFD 314
Query 348 DQVILLNKHIDAYKTFPPTEPKKDKKK 374
+ V + ++ +D T P + K K +
Sbjct 315 NYVKICDQCVDGVGTRPKDDEPKPKSR 341
>sp|Q9PZ49|NCAP_CVTNC Nucleoprotein OS=Turkey coronavirus (strain
NC95) OX=231431 GN=N PE=3 SV=1
Length=409
Score = 112 bits (281), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 140/317 (44%), Gaps = 20/317 (6%)
Query 50 ASWFTALT--QHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPR 107
ASWF ++ + KF G GVP N N Q GY+RR R + G G K +
Sbjct 33 ASWFQSIKAKKLNSPQPKF-EGSGVPDNENIKTSQQHGYWRRQAR-FKPGKGGRKPVPDA 90
Query 108 WYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTL 167
WYFYY GTGP A L +G +DGI+WVA +GA + + GTR+P L+
Sbjct 91 WYFYYTGTGPAADLNWGDTQDGIVWVAAKGADVKSRSNQGTRDPDKFDQYPLRF------ 144
Query 168 PKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRL 227
S GG ++ R + R+ ++ + +R G D L
Sbjct 145 --------SDGGPDSNFRWDFIPLHRGRSGRSTAASSAASSRAPSRDGSRGRRSGSEDDL 196
Query 228 NQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFG 287
+K+ + QQ++G +TK A E + + KRT Y V Q FG R + +GNFG
Sbjct 197 IARAAKII-QDQQKKGSRITKAKADEMAHRRYCKRTVPPGYKVDQVFGPRT-KGKEGNFG 254
Query 288 DQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFK 347
D ++ +G + PS+ A SR+ ++ P G L + + DP F
Sbjct 255 DDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQPDGLHLRFEFTTVVPRDDPQFD 314
Query 348 DQVILLNKHIDAYKTFP 364
+ V + ++ +D T P
Sbjct 315 NYVTICDQCVDGIGTRP 331
>sp|Q9J4B0|NCAP_IBVDE Nucleoprotein OS=Avian infectious bronchitis
virus (strain DE072) OX=233265 GN=N PE=3 SV=1
Length=409
Score = 112 bits (279), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 102/325 (31%), Positives = 150/325 (46%), Gaps = 36/325 (11%)
Query 50 ASWFTALTQHGKEDLKFPR----GQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLS 105
ASWF A+ + L P+ G GVP N N Q GY+RR R + G K +
Sbjct 33 ASWFQAIKA---KKLNSPQPKFEGSGVPDNENLKTSQQHGYWRRQLR-FKPSKGGRKPVP 88
Query 106 PRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGT 165
WYFYY GTGP A L +G ++DGI+WVA +GA + + GTR+P L+ G
Sbjct 89 DAWYFYYTGTGPAADLNWGDSQDGIVWVAAKGADVKSRSNQGTRDPDKFDQYPLRFSDGG 148
Query 166 TLPKGFYAEG----SRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGD--AAL 219
P G + +RG ++ +++ S SSR + SRG R +G+ GD A
Sbjct 149 --PDGNFRWDFIPLNRG--RSGRSTAASSAASSRAPSRDGSRG----RRSGSEGDLIARA 200
Query 220 ALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGP 279
A ++ D QQ++G +TK A E + + KRT Y V Q FG R
Sbjct 201 AKIIQD-------------QQKRGSRITKAKADEMAHRRYCKRTIPPGYKVDQVFGPR-T 246
Query 280 EQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKL 339
+ +GNFGD ++ +G + PS+ A SR+ ++ P G L +
Sbjct 247 KGKEGNFGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQPDGLHLKIEFTTVV 306
Query 340 DDKDPNFKDQVILLNKHIDAYKTFP 364
DP F + V + ++ +D T P
Sbjct 307 SRDDPQFDNYVKICDQCVDGVGTRP 331
>sp|Q98Y32|NCAP_IBVH5 Nucleoprotein OS=Avian infectious bronchitis
virus (strain H52) OX=231425 GN=N PE=2 SV=1
Length=409
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 141/319 (44%), Gaps = 24/319 (8%)
Query 50 ASWFTALTQHGKEDLKFP----RGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLS 105
SWF A+ + L P G GVP N N P Q GY+RR R + G G K +
Sbjct 33 VSWFQAIKA---KKLNSPPPKFEGSGVPDNENLKPSQQHGYWRRQAR-FKPGKGGRKPVP 88
Query 106 PRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGT 165
WYFYY GTGP A L +G ++DGI+WVA +GA + + GTR+ L+ G
Sbjct 89 DAWYFYYTGTGPAANLNWGDSQDGIVWVAGKGADTKFRSNQGTRDSDKFDQYPLRFSDG- 147
Query 166 TLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLD 225
G G + +R R+ + ++ +P+R G + L+
Sbjct 148 ---------GPDGNFRWDFIPLNRGRSGRSTAASSAASSRAPSREVSRGRRSGSEDDLIA 198
Query 226 RLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGN 285
R ++ + QQ++G +TK A E + + KRT Y V Q FG R + +GN
Sbjct 199 RAARII-----QDQQKKGSRITKAKADEMAHRRYCKRTIPPNYKVDQVFGPRT-KGKEGN 252
Query 286 FGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPN 345
FGD ++ +G + PS+ A SR+ + P G L + + DP
Sbjct 253 FGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPRLQPDGLHLKFEFTTVVPRDDPQ 312
Query 346 FKDQVILLNKHIDAYKTFP 364
F + V + ++ +D T P
Sbjct 313 FDNYVKICDQCVDGVGTRP 331
>sp|Q9PZ51|NCAP_CVTIN Nucleoprotein OS=Turkey coronavirus (strain
Indiana) OX=231429 GN=N PE=3 SV=1
Length=409
Score = 109 bits (273), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 92/318 (29%), Positives = 137/318 (43%), Gaps = 20/318 (6%)
Query 49 TASWFTALT--QHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSP 106
+ SWF A+ + KF G GVP N N Q GY+RR R + G K +
Sbjct 32 SVSWFQAIKAKKLNSPQPKF-EGSGVPDNENLKTSQQHGYWRRQAR-FKSSRGGRKPVPD 89
Query 107 RWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTT 166
WYFYY GTGP A L +G ++ GI+WVA +GA K + GTR+P L+
Sbjct 90 AWYFYYTGTGPAADLQWGDSQAGIVWVAAKGADVKSKSNQGTRDPDKFDQYPLRF----- 144
Query 167 LPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDR 226
S GG + R N R+ + + +R G D
Sbjct 145 ---------SDGGPDGNFRWDFIPLNRGRSGRSTAVSSAASSRAPSREGSRGRRSGAEDD 195
Query 227 LNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNF 286
L +K+ + QQ++G +TK A E + + KRT Y V Q FG R + +GNF
Sbjct 196 LIARAAKII-QDQQKKGSRITKAKAEEMAHRRYCKRTVPPGYKVEQVFGPRT-KGKEGNF 253
Query 287 GDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNF 346
GD ++ +G + PS+ A S++ ++ P G L + + DP F
Sbjct 254 GDDKMNEEGIKDGRVTAMLNLVPSSHACLFASKLTPKLQPDGLHLKFEFTTVVPRDDPQF 313
Query 347 KDQVILLNKHIDAYKTFP 364
+ V + ++ +D T P
Sbjct 314 DNYVSICDQCVDGVGTRP 331
>sp|Q82616|NCAP_IBVM Nucleoprotein OS=Avian infectious bronchitis
virus (strain M41) OX=11127 GN=N PE=3 SV=1
Length=409
Score = 109 bits (272), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 97/319 (30%), Positives = 147/319 (46%), Gaps = 24/319 (8%)
Query 50 ASWFTALTQHGKEDLKFPR--GQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPR 107
ASWF A+ + K ++ P+ G GVP N N Q GY+RR + G G K +
Sbjct 33 ASWFQAIKAN-KLNIPPPKFEGSGVPDNENLKSSQQHGYWRRQAT-FKPGKGGRKPVPDA 90
Query 108 WYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTL 167
WYFYY GTGP A L +G ++DGI+WVA +GA + + GTR+ L+ G
Sbjct 91 WYFYYTGTGPAANLNWGDSQDGIVWVAGKGADTKFRSNQGTRDSDKFDQYPLRFSDGGPD 150
Query 168 PKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGD--AALALLLLD 225
+ G ++ +++ S SSR + SRG R +G+ D A A ++ D
Sbjct 151 GNFRWDFIPLNGGRSGRSTAASSAASSRAPSREVSRG----RRSGSEDDLIARAARIIQD 206
Query 226 RLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGN 285
QQ++G +TK A E + + KRT Y V Q FG R + +GN
Sbjct 207 -------------QQKKGSRITKAKADEMAHRRYCKRTIPPNYKVDQVFGPRT-KGKEGN 252
Query 286 FGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPN 345
FGD ++ +G + PS+ A SR+ ++ P G L + + DP
Sbjct 253 FGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQPDGLHLKFEFTTVVPRDDPQ 312
Query 346 FKDQVILLNKHIDAYKTFP 364
F + V + ++ +D T P
Sbjct 313 FDNYVKICDQCVDGVGTRP 331
>sp|P05991|NCAP_CVPFS Nucleoprotein OS=Porcine transmissible gastroenteritis
coronavirus (strain FS772/70) OX=11150 GN=N PE=1
SV=1
Length=382
Score = 105 bits (262), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 95/335 (28%), Positives = 159/335 (47%), Gaps = 43/335 (13%)
Query 81 DDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALN 140
D QIGY+ R TR R G+ K+L RW+FYYLGTGP A + DG++WVA +GA+N
Sbjct 64 DQQIGYWNRQTR-YRMVKGQRKELPERWFFYYLGTGPHADAKFKDKLDGVVWVAKDGAMN 122
Query 141 TPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPG 200
P +G+R ANN + L+ +P F E + + S S
Sbjct 123 KPTT-LGSRG-ANNESKALKF--DGKVPGEFQLE-------VNQSRDNSRSRSQSRSRSR 171
Query 201 SSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQ 260
+ + + + N D ++ +L L +L G ++Q Q KS ++ K R
Sbjct 172 NRSQSRGRQQSNNKKDDSVEQAVLAALKKL-----GVDTEKQQQRSCSKSKERSNSKTRD 226
Query 261 -----------KRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAP 309
KRTA K +VT+ +G R + NFGD +L+ G+ KH+PQ+A+ P
Sbjct 227 TTPKNENKHTWKRTAGKG-DVTRFYGARS---SSANFGDSDLVANGSSAKHYPQLAECVP 282
Query 310 SASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPK 369
S S+ S + +T+T L DP K + L + I+AY P+E
Sbjct 283 SVSSILFGSYWTSKEDGDQIEVTFTHKYHLPKDDP--KTEQFL--QQINAYAR--PSEVA 336
Query 370 KDKKKKADETQALPQRQKKQQTVTLLPAADLDDFS 404
K+++K+ +++ + +++ ++P A +++++
Sbjct 337 KEQRKRKSRSKSAERSEQE-----VVPDALIENYT 366
>sp|Q7T6S8|NCAP_CVCBG Nucleoprotein OS=Canine coronavirus (strain
BGF10) OX=441619 GN=N PE=3 SV=1
Length=382
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 136/284 (48%), Gaps = 33/284 (12%)
Query 72 VPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGII 131
VP+ + D QIGY+ R R R G+ KDL RW+FYYLGTGP A + DG++
Sbjct 56 VPLKIGNK-DQQIGYWNRQIR-YRMVKGQRKDLPERWFFYYLGTGPHADAKFKQKLDGVV 113
Query 132 WVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSR 191
WVA EGA+ P +GTR NN + L+ +P F E +Q+ S SRS+
Sbjct 114 WVAKEGAMTKPTT-LGTRG-TNNESKALKF--DVKVPSEFQLE----VNQSRDNSRSRSQ 165
Query 192 NSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSA 251
+ S++ T SRG + + N D ++ +L L +L G ++Q Q KS
Sbjct 166 SRSQSRTRAQSRGR---QQSNNKKDDSVEQAVLAALKKL-----GVDTEKQQQRARSKSK 217
Query 252 AEASKKPRQ-----------KRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKH 300
++ K R KRTA K +VT+ +G R + NFGD +L+ G KH
Sbjct 218 ERSNSKTRDTTPKNENKHTWKRTAGKG-DVTKFYGARS---SSANFGDSDLVANGNSAKH 273
Query 301 WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDP 344
+PQ+A+ PS S+ S + +T+T L DP
Sbjct 274 YPQLAECVPSVSSILFGSHWTAKEDGDQIEVTFTHKYHLPKDDP 317
>sp|Q04700|NCAP_CVCAK Nucleoprotein OS=Canine coronavirus (strain
K378) OX=33732 GN=N PE=3 SV=1
Length=382
Score = 103 bits (256), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 130/274 (47%), Gaps = 30/274 (11%)
Query 81 DDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALN 140
D QIGY+ R +R R G+ K+L RW+FYYLGTGP A + DG++WVA +GA+N
Sbjct 64 DQQIGYWNRQSR-YRMVKGQRKELPERWFFYYLGTGPHADAKFKDRIDGVVWVAKDGAMN 122
Query 141 TPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRG----------GSQASSRSSSRS 190
P +G R ANN + L+ +P F E ++ SQ+ +RS SR
Sbjct 123 KPTT-LGNRG-ANNESKALKF--DGKVPGEFQLEVNQSRDNSRSPSQSRSQSRNRSQSRG 178
Query 191 RNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKS 250
R S N S A + AAL L +D Q + S +++ + T+ +
Sbjct 179 RQQSNNKKDDS---VEQAVL------AALKKLGVDTEKQQQRSRS--KSKERSNSKTRDT 227
Query 251 AAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPS 310
+ K KRTA K +VT+ +G R + NFGD +L+ G KH+PQ+A+ PS
Sbjct 228 TPKNENKHTWKRTAGKG-DVTKFYGARS---SSANFGDSDLVANGNGAKHYPQLAECVPS 283
Query 311 ASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDP 344
S+ S + +T+T L DP
Sbjct 284 VSSILFGSYWTAKEDGDQIEVTFTHKYHLPKDDP 317
>sp|P33463|NCAP_CVPR8 Nucleoprotein OS=Porcine respiratory coronavirus
(strain 86/137004 / isolate British) OX=33736 GN=N
PE=3 SV=1
Length=382
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/330 (27%), Positives = 159/330 (48%), Gaps = 33/330 (10%)
Query 81 DDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALN 140
D QIGY+ R TR R G+ K+L RW+FYYLGTGP A + DG++WVA +GA+N
Sbjct 64 DQQIGYWNRQTR-YRMVKGQRKELPERWFFYYLGTGPHADAKFKDKLDGVVWVAKDGAMN 122
Query 141 TPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPG 200
P +G+R ANN + L+ +P F E + + S S
Sbjct 123 KPTT-LGSRG-ANNESKALKF--DGKVPGEFQLE-------VNQSRDNSRSRSQSRSRSR 171
Query 201 SSRGTSPARMAGNGGDAALALLLLDRLNQL------ESKMSGKGQQQQGQTVTKKSAAEA 254
+ + + + N D ++ +L L +L + + S +++ + T+ + +
Sbjct 172 NRSQSRGRQQSNNKKDDSVEQAVLAALKKLGVYTEKQQQRSRSKSKERSNSKTRDTTPKN 231
Query 255 SKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAF 314
K KRTA K +VT+ +G R + NFGD +L+ G+ KH+PQ+A+ PS S+
Sbjct 232 ENKHTWKRTAGKG-DVTRFYGARS---SSANFGDSDLVANGSSAKHYPQLAECVPSVSSI 287
Query 315 FGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKK 374
S + +T+T L P K + L + I+AY P+E K+++K
Sbjct 288 LFGSYWTSKEDGDQIEVTFTHKYHLPKDHP--KTEQFL--QQINAYAC--PSEVAKEQRK 341
Query 375 KADETQALPQRQKKQQTVTLLPAADLDDFS 404
+ +++ + +++ ++P + +++++
Sbjct 342 RKSRSKSAERSEQE-----VVPDSLIENYT 366
>sp|P24411|NCAP_CVPRM Nucleoprotein OS=Porcine respiratory coronavirus
(strain RM4) OX=11148 GN=N PE=3 SV=1
Length=382
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/330 (27%), Positives = 160/330 (48%), Gaps = 33/330 (10%)
Query 81 DDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALN 140
D QIGY+ R TR R G+ K+L RW+FYYLGTGP A + DG++WVA +GA+N
Sbjct 64 DQQIGYWNRQTR-YRMVKGQRKELPERWFFYYLGTGPHADAKFKDKLDGVVWVAKDGAMN 122
Query 141 TPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPG 200
P +G+R ANN + L+ +P F E + + S S
Sbjct 123 KPTT-LGSRG-ANNESKALKF--DGKVPGEFQLE-------VNQSRDNSRSRSQSRSRSR 171
Query 201 SSRGTSPARMAGNGGDAALALLLLDRLNQL------ESKMSGKGQQQQGQTVTKKSAAEA 254
+ + + + N D ++ +L L +L + + S +++ + T+ + +
Sbjct 172 NRSQSRGRQQSNNKKDDSVEQAVLAALKKLGVYTEKQQQRSRSKSKERSNSKTRDTTPKN 231
Query 255 SKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAF 314
K KRTA K +VT+ +G R + NFGD +L+ G+ KH+PQ+A+ PS S+
Sbjct 232 ENKHTWKRTAGKG-DVTRFYGARS---SSANFGDSDLVANGSSAKHYPQLAECVPSVSSI 287
Query 315 FGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKK 374
S + +T+T L P K + L + I+AY + P+E K+++K
Sbjct 288 LFGSYWTSKEDGDQIEVTFTHKYHLPKDHP--KTEQFL--QQINAYAS--PSELAKEQRK 341
Query 375 KADETQALPQRQKKQQTVTLLPAADLDDFS 404
+ +++ + +++ ++P + +++++
Sbjct 342 RKSRSKSAERSEQE-----VVPDSLIENYT 366
>sp|P04134|NCAP_CVPPU Nucleoprotein OS=Porcine transmissible gastroenteritis
coronavirus (strain Purdue) OX=11151 GN=N PE=1
SV=2
Length=382
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 160/332 (48%), Gaps = 37/332 (11%)
Query 81 DDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALN 140
D QIGY+ R TR R G+ K+L RW+FYYLGTGP A + DG++WVA +GA+N
Sbjct 64 DQQIGYWNRQTR-YRMVKGQRKELPERWFFYYLGTGPHADAKFKDKLDGVVWVAKDGAMN 122
Query 141 TPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPG 200
P +G+R ANN + L+ +P F E + + S S
Sbjct 123 KPTT-LGSRG-ANNESKALKF--DGKVPGEFQLE-------VNQSRDNSRSRSQSRSRSR 171
Query 201 SSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASK---- 256
+ + + N D ++ +L L +L + + QQQ+ ++ +K+ + ++
Sbjct 172 NRSQSRGRQQFNNKKDDSVEQAVLAALKKL--GVDTEKQQQRSRSKSKERSNSKTRDTTP 229
Query 257 ----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSAS 312
K KRTA K +VT+ +G R + NFGD +L+ G+ KH+PQ+A+ PS S
Sbjct 230 KNENKHTWKRTAGKG-DVTRFYGARS---SSANFGDTDLVANGSSAKHYPQLAECVPSVS 285
Query 313 AFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDK 372
+ S + +T+T L DP + + I+AY P+E K++
Sbjct 286 SILFGSYWTSKEDGDQIEVTFTHKYHLPKDDP----KTGQFLQQINAYAR--PSEVAKEQ 339
Query 373 KKKADETQALPQRQKKQQTVTLLPAADLDDFS 404
+K+ +++ ++ +Q V +P A +++++
Sbjct 340 RKRKSRSKSA---ERSEQDV--VPDALIENYT 366
>sp|Q0Q462|NCAP_BC512 Nucleoprotein OS=Bat coronavirus 512/2005
OX=693999 GN=N PE=1 SV=1
Length=394
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 95/323 (29%), Positives = 141/323 (44%), Gaps = 50/323 (15%)
Query 81 DDQIGYYRRATR-RIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGAL 139
D QIGY+ R R+R GD DL W+FY+LGTGP + LP+ DG+ WVA +GA
Sbjct 49 DQQIGYWVEQQRWRMRRGD--RVDLPSNWHFYFLGTGPHSDLPFRKRTDGVFWVAIDGAK 106
Query 140 NTPKDHIGTRNPA-------------NNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRS 186
P +G R + NN IV T + G Q++SR
Sbjct 107 TQPT-GLGVRKSSEKPLVPKFKNKLPNNVEIVEPT---TPNNSRANSRSRSRGGQSNSRG 162
Query 187 SS-----RSRNSSRNSTPGSSRGTSPARMAGNGGDAALALL--LLDRLNQLESKMSGKGQ 239
+S +SRN SRN + + RG+ + D +A + L+ L +K KG+
Sbjct 163 NSQNRGDKSRNQSRNRSQSNDRGS-------DSRDDLVAAVKKALEDLGVGAAKP--KGK 213
Query 240 QQQGQTVTKKSA-------AEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELI 292
Q G+ K + AEA KP +RT + +V FG RG + NFG E +
Sbjct 214 TQSGKNTPKNKSRSGSVQRAEAKDKPEWRRTPSGDESVEVCFGPRGGTR---NFGSSEFV 270
Query 293 RQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVIL 352
+G + + Q A P A+A + + G +TYT + + D N + +
Sbjct 271 AKGVNAPGYAQAASLVPGAAALLFGGNVATKEMADGVEITYTYKMLVPKDDKNLE----I 326
Query 353 LNKHIDAYKTFPPTEPKKDKKKK 375
+DAYK P +K K+ +
Sbjct 327 FLAQVDAYKLGDPKPQRKVKRSR 349
>sp|P36298|NCAP_CVCAI Nucleoprotein OS=Canine coronavirus (strain
Insavc-1) OX=36391 GN=N PE=3 SV=1
Length=381
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 84/264 (32%), Positives = 132/264 (50%), Gaps = 11/264 (4%)
Query 81 DDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALN 140
D QIGY+ R TR R G+ K+L +W+FYYLGTGP A + DG++WVA ++
Sbjct 64 DQQIGYWNRQTR-YRMVKGRRKNLPEKWFFYYLGTGPHADAKFKQKLDGVVWVARGDSMT 122
Query 141 TPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPG 200
P +GTR NN + L+ +P F+ E ++ + SRS SRS++ +R+ + G
Sbjct 123 KPTT-LGTRG-TNNESKALKF--DVKVPSEFHLEVNQLRDNSRSRSQSRSQSRNRSQSRG 178
Query 201 SSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQ 260
R S + N A LA L ++ + + S +++ + T+ + + K
Sbjct 179 --RQLSNNKKDDNVEQAVLAALKKLGVDTEKQQRSRSKSKERSSSKTRDTTPKNENKHTW 236
Query 261 KRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRI 320
KRTA K +VT+ +G R + NFGD +L+ G KH+PQ+A+ PS S+ S
Sbjct 237 KRTAGKG-DVTKFYGARS---SSANFGDSDLVANGNGAKHYPQLAECVPSVSSILFGSHW 292
Query 321 GMEVTPSGTWLTYTGAIKLDDKDP 344
+ +T+T L DP
Sbjct 293 TAKEDGDQIEVTFTHKYHLPKDDP 316
>sp|P15130|NCAP_CVH22 Nucleoprotein OS=Human coronavirus 229E
OX=11137 GN=N PE=1 SV=2
Length=389
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 87/302 (29%), Positives = 128/302 (42%), Gaps = 38/302 (13%)
Query 72 VPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGII 131
VPIN + IGY+ +R R GK DLSP+ +FYYLGTGP + +G++
Sbjct 44 VPINKKDK-NKLIGYWN-VQKRFRTRKGKRVDLSPKLHFYYLGTGPHKDAKFRERVEGVV 101
Query 132 WVATEGALNTPKDHIGTRNPANNAAIVL---QLPQGTTLPKGFYAEGSRG----GSQASS 184
WVA +GA P + G R + I +LP G T+ SR S++ S
Sbjct 102 WVAVDGAKTEPTGY-GVRRKNSEPEIPHFNQKLPNGVTV---VEEPDSRAPSRSQSRSQS 157
Query 185 RSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKG------ 238
R S+ SRN P S R + AAL L D+ + + K + G
Sbjct 158 RGRGESKPQSRN--PSSDRNHNSQDDIMKAVAAALKSLGFDKPQEKDKKSAKTGTPKPSR 215
Query 239 ------QQQQGQTVTKKSAAEASK------KPRQKRTATKAY--NVTQAFGRRGPEQTQG 284
Q +++ + ++E + KPR KR NVTQ F GP
Sbjct 216 NQSPASSQTSAKSLARSQSSETKEQKHEMQKPRWKRQPNDDVTSNVTQCF---GPRDLDH 272
Query 285 NFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDP 344
NFG ++ G K +PQ A+ PS +A S I + + + LT+T + + P
Sbjct 273 NFGSAGVVANGVKAKGYPQFAELVPSTAAMLFDSHIVSKESGNTVVLTFTTRVTVPKDHP 332
Query 345 NF 346
+
Sbjct 333 HL 334
>sp|Q07499|NCAP_PEDV7 Nucleoprotein OS=Porcine epidemic diarrhea
virus (strain CV777) OX=229032 GN=N PE=1 SV=1
Length=441
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 95/349 (27%), Positives = 142/349 (41%), Gaps = 69/349 (20%)
Query 72 VPINTNSSPDDQIGYYRRATR-RIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGI 130
VP N + D QIGY+ R R+R G+ +++ S W+FYYLGTGP L Y +G+
Sbjct 39 VPTNKGNK-DQQIGYWNEQIRWRMRRGE-RIEQPS-NWHFYYLGTGPHGDLRYRTRTEGV 95
Query 131 IWVATEGALNTPKDHIGTRNPANNAAI---------VLQLPQGTTLPKGFYAEGSRGGSQ 181
WVA EGA P + +G R + I V+++ + T P SR
Sbjct 96 FWVAKEGAKTEPTN-LGVRKASEKPIIPKFSQQLPSVVEIVEPNTPPASRANSRSRSRGN 154
Query 182 ASSRSSSRSRNSSRNSTPGSS--RGTSPARMAGN-------------------------G 214
++RS S S N N + G+S RG + R A G
Sbjct 155 GNNRSRSPSNNRGNNQSRGNSQNRGNNQGRGASQNRGGNNNNNNKSRNQSNNRNQSNDRG 214
Query 215 GDAALALLLLDRLNQLESKMSGKGQQQQ--------------GQTVTKKSAAEASKK--- 257
G + L+ + L+S G+ + G+ KK+ + A+ K
Sbjct 215 GVTSRDDLVAAVKDALKSLGIGENPDRHKQQQKPKQEKSDNSGKNTPKKNKSRATSKERD 274
Query 258 ----PRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASA 313
P +R +V FG RG + NFGD E + +G D + QIA AP+ +A
Sbjct 275 LKDIPEWRRIPKGENSVAACFGPRGGFK---NFGDAEFVEKGVDASGYAQIASLAPNVAA 331
Query 314 FFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKT 362
+ + +TY + + DPN V LL +DA+KT
Sbjct 332 LLFGGNVAVRELADSYEITYNYKMTVPKSDPN----VELLVSQVDAFKT 376
>sp|Q6Q1R8|NCAP_CVHNL Nucleoprotein OS=Human coronavirus NL63
OX=277944 GN=N PE=1 SV=1
Length=377
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 36/58 (62%), Gaps = 1/58 (2%)
Query 81 DDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGA 138
D+QIGY+ R R G+ DL P+ +FYYLGTGP L + DG++WVA EGA
Sbjct 50 DEQIGYWN-VQERWRMRRGQRVDLPPKVHFYYLGTGPHKDLKFRQRSDGVVWVAKEGA 106
>sp|P11278|PLYP_YERPS Periplasmic pectate lyase OS=Yersinia pseudotuberculosis
serotype I (strain IP32953) OX=273123 GN=pelY
PE=3 SV=2
Length=572
Score = 34.3 bits (77), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/56 (38%), Positives = 24/56 (43%), Gaps = 3/56 (5%)
Query 237 KGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGP---EQTQGNFGDQ 289
K QQ QG V K A+ PR +T Y TQA R P T FGD+
Sbjct 240 KYQQDQGALVWAKRLADQYVLPRDAKTGLGVYQFTQALKREEPTDDADTHSKFGDR 295
>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens OX=9606 GN=ANK1
PE=1 SV=3
Length=1881
Score = 33.9 bits (76), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/108 (30%), Positives = 48/108 (44%), Gaps = 6/108 (6%)
Query 130 IIWVATEGALNTPKDHIGTRNP-ANNAAIVLQL-PQGTTLPKGFYAEGSRGGSQASSRSS 187
+I T+G + P HI RN AA++LQ P L K + + +
Sbjct 163 LINYGTKGKVRLPALHIAARNDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAAHYENLNVA 222
Query 188 SR--SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESK 233
+R +S N TP G +P +A G+ + LLLDR Q+E+K
Sbjct 223 QLLLNRGASVNFTP--QNGITPLHIASRRGNVIMVRLLLDRGAQIETK 268
>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus OX=10090 GN=Ank1
PE=1 SV=2
Length=1862
Score = 33.1 bits (74), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 31/108 (29%), Positives = 48/108 (44%), Gaps = 6/108 (6%)
Query 130 IIWVATEGALNTPKDHIGTRNP-ANNAAIVLQL-PQGTTLPKGFYAEGSRGGSQASSRSS 187
+I T+G + P HI RN AA++LQ P L K + + +
Sbjct 159 LINYGTKGKVRLPALHIAARNDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAAHYENLNVA 218
Query 188 SR--SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESK 233
+R +S N TP G +P +A G+ + LLLDR Q+E++
Sbjct 219 QLLLNRGASVNFTP--QNGITPLHIASRRGNVIMVRLLLDRGAQIETR 264
>sp|C0LGK4|Y2165_ARATH Probable LRR receptor-like serine/threonine-protein
kinase At2g16250 OS=Arabidopsis thaliana OX=3702
GN=At2g16250 PE=1 SV=1
Length=915
Score = 32.7 bits (73), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 44/103 (43%), Gaps = 0/103 (0%)
Query 193 SSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAA 252
+S+N++ G SR T A GG A + L ++ + + + Q+G K A
Sbjct 434 TSKNASSGISRRTVIILAAVGGGVAFILLFVILPIILVLCMRHRRRAAQRGNNDRPKPAG 493
Query 253 EASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQG 295
EAS++P + + AF Q F D LI++G
Sbjct 494 EASQQPPKGAQTFDLSRLGNAFSYEQLLQATEEFNDANLIKRG 536
Lambda K H a alpha
0.310 0.128 0.371 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 40990875652
Results from round 2
Query= sp|P0DTC9|NCAP_SARS2 Nucleoprotein OS=Severe acute respiratory
syndrome coronavirus 2 OX=2697049 GN=N PE=1 SV=1
Length=419
Score E
Sequences producing significant alignments: (Bits) Value
Sequences used in model and found again:
sp|P0DTC9|NCAP_SARS2 Nucleoprotein OS=Severe acute respiratory sy... 489 2e-171
sp|Q3I5I7|NCAP_BCRP3 Nucleoprotein OS=Bat coronavirus Rp3/2004 OX... 471 2e-164
sp|Q3LZX4|NCAP_BCHK3 Nucleoprotein OS=Bat coronavirus HKU3 OX=442... 466 1e-162
sp|P59595|NCAP_SARS Nucleoprotein OS=Severe acute respiratory syn... 465 9e-162
sp|Q0Q468|NCAP_BC279 Nucleoprotein OS=Bat coronavirus 279/2005 OX... 460 4e-160
sp|P59713|NCAP_CVPV Nucleoprotein OS=Puffinosis coronavirus OX=76... 403 5e-137
sp|P18446|NCAP_CVM1 Nucleoprotein OS=Murine coronavirus (strain 1... 401 2e-136
sp|P03416|NCAP_CVMA5 Nucleoprotein OS=Murine coronavirus (strain ... 398 4e-135
sp|P18447|NCAP_CVM3 Nucleoprotein OS=Murine coronavirus (strain 3... 397 1e-134
sp|Q02915|NCAP_CVRSD Nucleoprotein OS=Rat coronavirus (strain 681... 396 2e-134
sp|Q83360|NCAP_CVMDV Nucleoprotein OS=Murine coronavirus (strain ... 396 3e-134
sp|P18448|NCAP_CVMS Nucleoprotein OS=Murine coronavirus (strain S... 395 5e-134
sp|P03417|NCAP_CVMJH Nucleoprotein OS=Murine coronavirus (strain ... 393 3e-133
sp|Q5MQC6|NCAP_CVHN1 Nucleoprotein OS=Human coronavirus HKU1 (iso... 391 1e-132
sp|Q64960|NCAP_IBVAR Nucleoprotein OS=Avian infectious bronchitis... 389 2e-132
sp|Q9PY96|NCAP_CVM2 Nucleoprotein OS=Murine coronavirus (strain 2... 390 5e-132
sp|Q9WCD0|NCAP_CVRNJ Nucleoprotein OS=Rat coronavirus (strain NJ)... 390 6e-132
sp|Q8JMI6|NCAP_IBVSA Nucleoprotein OS=Avian infectious bronchitis... 387 1e-131
sp|Q0ZME3|NCAP_CVHN5 Nucleoprotein OS=Human coronavirus HKU1 (iso... 388 2e-131
sp|Q14EA6|NCAP_CVHN2 Nucleoprotein OS=Human coronavirus HKU1 (iso... 388 2e-131
sp|Q9PZ50|NCAP_CVTMI Nucleoprotein OS=Turkey coronavirus (strain ... 386 3e-131
sp|P32923|NCAP_IBVG Nucleoprotein OS=Avian infectious bronchitis ... 386 5e-131
sp|P69598|NCAP_IBVBU Nucleoprotein OS=Avian infectious bronchitis... 385 8e-131
sp|P69597|NCAP_IBVBC Nucleoprotein OS=Avian infectious bronchitis... 385 8e-131
sp|P69596|NCAP_IBVB Nucleoprotein OS=Avian infectious bronchitis ... 385 8e-131
sp|P12648|NCAP_IBVK Nucleoprotein OS=Avian infectious bronchitis ... 385 1e-130
sp|Q9J4A3|NCAP_IBVD1 Nucleoprotein OS=Avian infectious bronchitis... 383 8e-130
sp|Q9PZ49|NCAP_CVTNC Nucleoprotein OS=Turkey coronavirus (strain ... 382 1e-129
sp|Q9J4B0|NCAP_IBVDE Nucleoprotein OS=Avian infectious bronchitis... 382 2e-129
sp|Q82616|NCAP_IBVM Nucleoprotein OS=Avian infectious bronchitis ... 381 4e-129
sp|Q98WJ7|NCAP_IBVH1 Nucleoprotein OS=Avian infectious bronchitis... 381 4e-129
sp|Q98Y32|NCAP_IBVH5 Nucleoprotein OS=Avian infectious bronchitis... 381 5e-129
sp|Q96598|NCAP_IBVVI Nucleoprotein OS=Avian infectious bronchitis... 379 4e-128
sp|Q9PZ51|NCAP_CVTIN Nucleoprotein OS=Turkey coronavirus (strain ... 377 2e-127
sp|Q9DQX6|NCAP_CVEN9 Nucleoprotein OS=Equine coronavirus (isolate... 369 9e-124
sp|P59712|NCAP_CVBQ Nucleoprotein OS=Bovine coronavirus (strain Q... 363 2e-121
sp|P10527|NCAP_CVBM Nucleoprotein OS=Bovine coronavirus (strain M... 363 2e-121
sp|Q8JSP4|NCAP_CVPIA Nucleoprotein OS=Porcine hemagglutinating en... 362 2e-121
sp|A3EXD7|NCAP_BCHK5 Nucleoprotein OS=Bat coronavirus HKU5 OX=694... 361 7e-121
sp|Q8BB23|NCAP_CVP67 Nucleoprotein OS=Porcine hemagglutinating en... 361 2e-120
sp|Q9QAR1|NCAP_CVBLS Nucleoprotein OS=Bovine coronavirus (strain ... 360 2e-120
sp|Q91A22|NCAP_CVBEN Nucleoprotein OS=Bovine coronavirus (strain ... 360 3e-120
sp|P26020|NCAP_CVBOK Nucleoprotein OS=Bovine coronavirus (strain ... 360 3e-120
sp|Q8V432|NCAP_CVBLU Nucleoprotein OS=Bovine coronavirus (strain ... 359 5e-120
sp|Q9QAR8|NCAP_CVBLY Nucleoprotein OS=Bovine coronavirus (strain ... 359 7e-120
sp|P19902|NCAP_CVBF Nucleoprotein OS=Bovine coronavirus (strain F... 358 1e-119
sp|Q96605|NCAP_IBVV1 Nucleoprotein OS=Avian infectious bronchitis... 355 5e-119
sp|A3EXH0|NCAP_BCHK9 Nucleoprotein OS=Bat coronavirus HKU9 OX=694... 354 1e-117
sp|P33469|NCAP_CVHOC Nucleoprotein OS=Human coronavirus OC43 OX=3... 351 5e-117
sp|K9N4V7|NCAP_MERS1 Nucleoprotein OS=Middle East respiratory syn... 344 2e-114
sp|A3EXA1|NCAP_BCHK4 Nucleoprotein OS=Bat coronavirus HKU4 OX=694... 340 7e-113
sp|Q0Q4E6|NCAP_BC133 Nucleoprotein OS=Bat coronavirus 133/2005 OX... 340 8e-113
sp|Q7T6S8|NCAP_CVCBG Nucleoprotein OS=Canine coronavirus (strain ... 302 8e-99
sp|P05991|NCAP_CVPFS Nucleoprotein OS=Porcine transmissible gastr... 300 8e-98
sp|Q04700|NCAP_CVCAK Nucleoprotein OS=Canine coronavirus (strain ... 300 8e-98
sp|P33463|NCAP_CVPR8 Nucleoprotein OS=Porcine respiratory coronav... 300 1e-97
sp|P24411|NCAP_CVPRM Nucleoprotein OS=Porcine respiratory coronav... 297 2e-96
sp|P04134|NCAP_CVPPU Nucleoprotein OS=Porcine transmissible gastr... 297 2e-96
sp|P25909|NCAP_FIPV Nucleoprotein OS=Feline coronavirus (strain F... 294 2e-95
sp|P36298|NCAP_CVCAI Nucleoprotein OS=Canine coronavirus (strain ... 293 4e-95
sp|Q0Q462|NCAP_BC512 Nucleoprotein OS=Bat coronavirus 512/2005 OX... 256 2e-80
sp|Q07499|NCAP_PEDV7 Nucleoprotein OS=Porcine epidemic diarrhea v... 243 6e-75
sp|P15130|NCAP_CVH22 Nucleoprotein OS=Human coronavirus 229E OX=1... 232 4e-71
sp|Q6Q1R8|NCAP_CVHNL Nucleoprotein OS=Human coronavirus NL63 OX=2... 206 2e-61
Sequences not found previously or not previously below threshold:
sp|A9KNW4|IF2_LACP7 Translation initiation factor IF-2 OS=Lachnoc... 44.4 0.002
sp|Q9XIN7|NAC40_ARATH NAC domain-containing protein 40 OS=Arabido... 40.2 0.023
sp|O61345|PENG_DROME Protein penguin OS=Drosophila melanogaster O... 39.8 0.043
sp|Q9NBL2|MSL3_DROVI Protein male-specific lethal-3 OS=Drosophila... 39.4 0.052
sp|Q7UZZ9|IF2_PROMP Translation initiation factor IF-2 OS=Prochlo... 39.0 0.081
sp|P17029|ZKSC1_HUMAN Zinc finger protein with KRAB and SCAN doma... 38.6 0.11
sp|Q28FY7|DBF4A_XENTR Protein DBF4 homolog A OS=Xenopus tropicali... 37.1 0.31
sp|A8PKH2|EIF3A_BRUMA Eukaryotic translation initiation factor 3 ... 37.1 0.36
sp|Q09779|THO2_SCHPO THO complex subunit 2 OS=Schizosaccharomyces... 36.3 0.64
sp|A2C4P1|IF2_PROM1 Translation initiation factor IF-2 OS=Prochlo... 36.3 0.71
sp|A2BT70|IF2_PROMS Translation initiation factor IF-2 OS=Prochlo... 36.0 0.87
sp|Q5R670|ZKSC1_PONAB Zinc finger protein with KRAB and SCAN doma... 35.2 1.2
sp|P12348|PER_DROPS Period circadian protein OS=Drosophila pseudo... 35.2 1.5
sp|Q46J13|IF2_PROMT Translation initiation factor IF-2 OS=Prochlo... 35.2 1.5
sp|O35893|SP100_MUSCR Nuclear autoantigen Sp-100 OS=Mus caroli OX... 34.4 1.8
sp|Q5UP83|YL004_MIMIV Putative KilA-N domain-containing protein L... 34.4 1.9
sp|Q96A59|MALD3_HUMAN MARVEL domain-containing protein 3 OS=Homo ... 34.4 2.0
sp|Q6NY19|KANK3_HUMAN KN motif and ankyrin repeat domain-containi... 34.4 2.4
sp|Q62018|CTR9_MOUSE RNA polymerase-associated protein CTR9 homol... 34.4 2.4
sp|A2BYM0|IF2_PROM5 Translation initiation factor IF-2 OS=Prochlo... 34.0 3.1
sp|Q3AZB7|IF2_SYNS9 Translation initiation factor IF-2 OS=Synecho... 33.6 4.4
sp|Q9VJ87|CWC22_DROME Pre-mRNA-splicing factor CWC22 homolog OS=D... 33.3 6.0
sp|B1MZH4|IF2_LEUCK Translation initiation factor IF-2 OS=Leucono... 32.9 6.3
sp|Q9C0D6|FHDC1_HUMAN FH2 domain-containing protein 1 OS=Homo sap... 32.9 6.7
sp|Q38W81|IF2_LATSS Translation initiation factor IF-2 OS=Latilac... 32.9 7.2
sp|Q6P1L5|F117B_HUMAN Protein FAM117B OS=Homo sapiens OX=9606 GN=... 32.5 8.5
sp|Q2UB17|ESF2_ASPOR Pre-rRNA-processing protein esf2 OS=Aspergil... 32.1 8.7
>sp|P0DTC9|NCAP_SARS2 Nucleoprotein OS=Severe acute respiratory
syndrome coronavirus 2 OX=2697049 GN=N PE=1 SV=1
Length=419
Score = 489 bits (1258), Expect = 2e-171, Method: Composition-based stats.
Identities = 419/419 (100%), Positives = 419/419 (100%), Gaps = 0/419 (0%)
Query 1 MSDNGPQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHG 60
MSDNGPQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHG
Sbjct 1 MSDNGPQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHG 60
Query 61 KEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAG 120
KEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAG
Sbjct 61 KEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAG 120
Query 121 LPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGS 180
LPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGS
Sbjct 121 LPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGS 180
Query 181 QASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQ 240
QASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQ
Sbjct 181 QASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQ 240
Query 241 QQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKH 300
QQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKH
Sbjct 241 QQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKH 300
Query 301 WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAY 360
WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAY
Sbjct 301 WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAY 360
Query 361 KTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFSKQLQQSMSSADSTQA 419
KTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFSKQLQQSMSSADSTQA
Sbjct 361 KTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFSKQLQQSMSSADSTQA 419
>sp|Q3I5I7|NCAP_BCRP3 Nucleoprotein OS=Bat coronavirus Rp3/2004
OX=349344 GN=N PE=3 SV=1
Length=421
Score = 471 bits (1212), Expect = 2e-164, Method: Composition-based stats.
Identities = 380/421 (90%), Positives = 396/421 (94%), Gaps = 2/421 (0%)
Query 1 MSDNGPQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHG 60
MSDNGPQNQR+APRITFGGP+DST +NQ+G RSGAR KQRRPQGLPNNTASWFTALTQHG
Sbjct 1 MSDNGPQNQRSAPRITFGGPTDSTDNNQDGGRSGARPKQRRPQGLPNNTASWFTALTQHG 60
Query 61 KEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAG 120
KE+L+FPRGQGVPINTNS DDQIGYYRRATRR+RGGDGKMK+LSPRWYFYYLGTGPEA
Sbjct 61 KEELRFPRGQGVPINTNSGKDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEAS 120
Query 121 LPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGS 180
LPYGANK+GI+WVATEGALNTPKDHIGTRNP NNAAIVLQLPQGTTLPKGFYAEGSRGGS
Sbjct 121 LPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAAIVLQLPQGTTLPKGFYAEGSRGGS 180
Query 181 QASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQ 240
QASSRSSSRSR +SRNSTPGSSRG SPARMA GG+ ALALLLLDRLNQLESK+SG+ QQ
Sbjct 181 QASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGRSQQ 240
Query 241 QQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKH 300
QQGQTVTKKSAAEASKKPRQKRTATK YNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKH
Sbjct 241 QQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKH 300
Query 301 WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAY 360
WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTY GAIKLDDKDP FKD VILLNKHIDAY
Sbjct 301 WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDAY 360
Query 361 KTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFSKQLQQSMS--SADSTQ 418
K FPPTEPKKDKKKK DE Q LPQRQKKQ TVTLLPAAD+DDFS+QLQ SMS SADSTQ
Sbjct 361 KIFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFSRQLQNSMSGASADSTQ 420
Query 419 A 419
A
Sbjct 421 A 421
>sp|Q3LZX4|NCAP_BCHK3 Nucleoprotein OS=Bat coronavirus HKU3 OX=442736
GN=N PE=3 SV=1
Length=421
Score = 466 bits (1200), Expect = 1e-162, Method: Composition-based stats.
Identities = 377/421 (90%), Positives = 396/421 (94%), Gaps = 2/421 (0%)
Query 1 MSDNGPQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHG 60
MSDNGPQ+QR+APRITFGGP+DS +NQ+G RSGAR KQRRPQGLPNNTASWFTALTQHG
Sbjct 1 MSDNGPQSQRSAPRITFGGPADSNDNNQDGGRSGARPKQRRPQGLPNNTASWFTALTQHG 60
Query 61 KEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAG 120
KE+L+FPRGQGVPINTNS DDQIGYYRRATRR+RGGDGKMK+LSPRWYFYYLGTGPEA
Sbjct 61 KEELRFPRGQGVPINTNSGKDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEAS 120
Query 121 LPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGS 180
LPYGANK+GI+WVATEGALNTPKDHIGTRNP NNAAIVLQLPQGTTLPKGFYAEGSRGGS
Sbjct 121 LPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAAIVLQLPQGTTLPKGFYAEGSRGGS 180
Query 181 QASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQ 240
Q+SSRSSSRSR +SRNSTPGSSRG+SPAR+A GG+ ALALLLLDRLNQLESK+SGKGQQ
Sbjct 181 QSSSRSSSRSRGNSRNSTPGSSRGSSPARLASGGGETALALLLLDRLNQLESKVSGKGQQ 240
Query 241 QQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKH 300
Q GQTVTKKSAAEASKKPRQKRTATK YNVTQAFGRRGPEQTQGNFGDQELIRQG DYKH
Sbjct 241 QPGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQELIRQGIDYKH 300
Query 301 WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAY 360
WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTY GAIKLDDKDP FKD VILLNKHIDAY
Sbjct 301 WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDAY 360
Query 361 KTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFSKQLQQSMS--SADSTQ 418
KTFPPTEPKKDKKKK DE Q LPQRQKKQ TVTLLPAAD+DDFS+QLQ SMS SADSTQ
Sbjct 361 KTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFSRQLQHSMSGASADSTQ 420
Query 419 A 419
A
Sbjct 421 A 421
>sp|P59595|NCAP_SARS Nucleoprotein OS=Severe acute respiratory
syndrome coronavirus OX=694009 GN=N PE=1 SV=1
Length=422
Score = 465 bits (1195), Expect = 9e-162, Method: Composition-based stats.
Identities = 382/422 (91%), Positives = 398/422 (94%), Gaps = 3/422 (1%)
Query 1 MSDNGPQ-NQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQH 59
MSDNGPQ NQR+APRITFGGP+DST +NQNG R+GAR KQRRPQGLPNNTASWFTALTQH
Sbjct 1 MSDNGPQSNQRSAPRITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALTQH 60
Query 60 GKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEA 119
GKE+L+FPRGQGVPINTNS PDDQIGYYRRATRR+RGGDGKMK+LSPRWYFYYLGTGPEA
Sbjct 61 GKEELRFPRGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEA 120
Query 120 GLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGG 179
LPYGANK+GI+WVATEGALNTPKDHIGTRNP NNAA VLQLPQGTTLPKGFYAEGSRGG
Sbjct 121 SLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGG 180
Query 180 SQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQ 239
SQASSRSSSRSR +SRNSTPGSSRG SPARMA GG+ ALALLLLDRLNQLESK+SGKGQ
Sbjct 181 SQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQ 240
Query 240 QQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYK 299
QQQGQTVTKKSAAEASKKPRQKRTATK YNVTQAFGRRGPEQTQGNFGDQ+LIRQGTDYK
Sbjct 241 QQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYK 300
Query 300 HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDA 359
HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTY GAIKLDDKDP FKD VILLNKHIDA
Sbjct 301 HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDA 360
Query 360 YKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFSKQLQQSMS--SADST 417
YKTFPPTEPKKDKKKK DE Q LPQRQKKQ TVTLLPAAD+DDFS+QLQ SMS SADST
Sbjct 361 YKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFSRQLQNSMSGASADST 420
Query 418 QA 419
QA
Sbjct 421 QA 422
>sp|Q0Q468|NCAP_BC279 Nucleoprotein OS=Bat coronavirus 279/2005
OX=389167 GN=N PE=3 SV=1
Length=420
Score = 460 bits (1184), Expect = 4e-160, Method: Composition-based stats.
Identities = 377/421 (90%), Positives = 394/421 (94%), Gaps = 3/421 (1%)
Query 1 MSDNGPQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHG 60
MSDNGPQNQR+APRITFGGPSDST +NQ+G RSGAR KQRRPQGLPNNTASWFTALTQHG
Sbjct 1 MSDNGPQNQRSAPRITFGGPSDSTDNNQDGGRSGARPKQRRPQGLPNNTASWFTALTQHG 60
Query 61 KEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAG 120
KE+L+FPRGQGVPINTNS DDQIGYYRRATRR+RGGDGKMK LSPRWYFYYLGTGPEA
Sbjct 61 KEELRFPRGQGVPINTNSGKDDQIGYYRRATRRVRGGDGKMKKLSPRWYFYYLGTGPEAS 120
Query 121 LPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGS 180
LPYGANK+GI+WVATEGALNTPKDHIGTRNP NNAAIVLQLPQGTTLPKGFYAEGSRGGS
Sbjct 121 LPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAAIVLQLPQGTTLPKGFYAEGSRGGS 180
Query 181 QASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQ 240
QASSRSSSRSR +SRNSTPGSSRG SPARMA G+ ALALLLLDRLNQLESK+SGKGQQ
Sbjct 181 QASSRSSSRSRGNSRNSTPGSSRGNSPARMASGSGETALALLLLDRLNQLESKVSGKGQQ 240
Query 241 QQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKH 300
QQGQTVTKKSAAEASKKPRQKRTATK+YNVTQAFGRRGPEQTQGNFGDQ+LIRQGTDYK+
Sbjct 241 QQGQTVTKKSAAEASKKPRQKRTATKSYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKY 300
Query 301 WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAY 360
WPQIAQFAPSASAFFGMSRIGMEVTP GTWLTY GAIKLDDKDP FKD VILLNKHIDAY
Sbjct 301 WPQIAQFAPSASAFFGMSRIGMEVTPLGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDAY 360
Query 361 KTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFSKQLQQSMS--SADSTQ 418
K FPPTEPKKDKKKK DE Q LPQR+K Q TVTLLPAAD+DDFS+QLQ SMS SADSTQ
Sbjct 361 KAFPPTEPKKDKKKKTDEAQPLPQRKK-QPTVTLLPAADMDDFSRQLQNSMSGASADSTQ 419
Query 419 A 419
A
Sbjct 420 A 420
>sp|P59713|NCAP_CVPV Nucleoprotein OS=Puffinosis coronavirus OX=76583
GN=N PE=2 SV=1
Length=457
Score = 403 bits (1035), Expect = 5e-137, Method: Composition-based stats.
Identities = 136/405 (34%), Positives = 200/405 (49%), Gaps = 42/405 (10%)
Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNN------TASWFTALTQHGK-EDLKFPRGQGVP 73
+D T N + G R++ ++ N SWF+ +TQ K ++ KF GQGVP
Sbjct 31 ADQTERGSNNQNRGRRNQPKQTATTQPNSGSVVPHYSWFSGITQFQKGKEFKFAEGQGVP 90
Query 74 INTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIW 132
I +Q GY+ R RR + DG+ K L PRWYFYYLGTGP AG YG + +G+ W
Sbjct 91 IANGIPATEQKGYWFRHNRRSFKSPDGQQKQLLPRWYFYYLGTGPYAGAEYGDDVEGVCW 150
Query 133 VATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRN 192
VA + A I R+P+++ AI + GT LP+G+Y EGS + AS S
Sbjct 151 VANKQADTRTSADIAERDPSSHEAIPTRFAPGTFLPQGYYVEGSGRSAPASRSGSRSQSR 210
Query 193 SSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAA 252
N SS PA + +A L+L +L + Q + VTK+SA
Sbjct 211 GPNNRARSSSNQRQPASIVKPDMAEEIAALVLAKLGKDAG---------QPKQVTKQSAK 261
Query 253 EASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFA 308
E + KPRQKRT K V Q FG+RGP Q NFG E+++ GT +P +A+ A
Sbjct 262 EVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGPEMLKLGTSDPQFPILAELA 318
Query 309 PSASAFFGMSRIGM---------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDA 359
P+A AFF S++ + E T L Y+GA++ D P F+ + +L ++++A
Sbjct 319 PTAGAFFFGSKLELVKKNSVGVDEPTKDVYELQYSGAVRFDSTLPGFETIMKVLRENLNA 378
Query 360 YKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFS 404
Y+ ++ AD PQR++ Q+ V ++D+ S
Sbjct 379 YQ---------NQDGGADVVSPKPQRKRGQRQVAQKKNDEVDNVS 414
>sp|P18446|NCAP_CVM1 Nucleoprotein OS=Murine coronavirus (strain
1) OX=11139 GN=N PE=3 SV=1
Length=455
Score = 401 bits (1030), Expect = 2e-136, Method: Composition-based stats.
Identities = 139/405 (34%), Positives = 202/405 (50%), Gaps = 44/405 (11%)
Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNN------TASWFTALTQHGK-EDLKFPRGQGVP 73
+D T N + G R++ ++ N SWF+ +TQ K ++ +F +GQGVP
Sbjct 31 ADQTERGPNNQNRGRRNQPKQTATTQPNSGSVVPHYSWFSGITQFQKGKEFQFAQGQGVP 90
Query 74 INTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIW 132
I +Q GY+ R RR + DG+ K L PRWYFYYLGTGP AG YG + DG++W
Sbjct 91 IANGIPASEQKGYWYRHNRRSFKTPDGQQKQLLPRWYFYYLGTGPHAGAEYGDDIDGVVW 150
Query 133 VATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRN 192
VA++ A I R+P+++ AI + GT LP+GFY EGS + AS S
Sbjct 151 VASQQADTKTTADIVERDPSSHEAIPTRFAPGTVLPQGFYVEGSGRSAPASRSGSRSQSR 210
Query 193 SSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAA 252
N SS PA +A L+L +L + Q + VTK+SA
Sbjct 211 GPNNRARSSSNQRQPASTVKPDMAEEIAALVLAKLGKDAG---------QPKQVTKQSAK 261
Query 253 EASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFA 308
E + KPRQKRT K V Q FG+RGP Q NFG E+++ GT +P +A+ A
Sbjct 262 EVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGSEMLKLGTSDPQFPILAELA 318
Query 309 PSASAFFGMSRIGM---------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDA 359
P+ SAFF S++ + + T L Y+GAI+ D P F+ + +LN+++DA
Sbjct 319 PTPSAFFFGSKLELVKKNSGGADDPTKDVYELQYSGAIRFDSTLPGFETIMKVLNENLDA 378
Query 360 YKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFS 404
Y+ D+ AD PQR++ + L ++D+ S
Sbjct 379 YQ---------DQAGGADVVSPKPQRKRGTKQKALK--GEVDNVS 412
>sp|P03416|NCAP_CVMA5 Nucleoprotein OS=Murine coronavirus (strain
A59) OX=11142 GN=N PE=1 SV=2
Length=454
Score = 398 bits (1022), Expect = 4e-135, Method: Composition-based stats.
Identities = 133/409 (33%), Positives = 199/409 (49%), Gaps = 34/409 (8%)
Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNN------TASWFTALTQHGK-EDLKFPRGQGVP 73
+D T N + G R++ ++ N SWF+ +TQ K ++ +F GQGVP
Sbjct 31 ADQTERGPNNQNRGRRNQPKQTATTQPNSGSVVPHYSWFSGITQFQKGKEFQFAEGQGVP 90
Query 74 INTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIW 132
I +Q GY+ R RR + DG+ K L PRWYFYYLGTGP AG YG + +G+ W
Sbjct 91 IANGIPASEQKGYWYRHNRRSFKTPDGQQKQLLPRWYFYYLGTGPHAGASYGDSIEGVFW 150
Query 133 VATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRN 192
VA A + I R+P+++ AI + GT LP+GFY EGS + AS S
Sbjct 151 VANSQADTNTRSDIVERDPSSHEAIPTRFAPGTVLPQGFYVEGSGRSAPASRSGSRSQSR 210
Query 193 SSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAA 252
N SS PA +A L+L +L + Q + VTK+SA
Sbjct 211 GPNNRARSSSNQRQPASTVKPDMAEEIAALVLAKLGKDAG---------QPKQVTKQSAK 261
Query 253 EASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFA 308
E + KPRQKRT K V Q FG+RGP Q NFG E+++ GT +P +A+ A
Sbjct 262 EVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGSEMLKLGTSDPQFPILAELA 318
Query 309 PSASAFFGMSRIGM---------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDA 359
P+ AFF S++ + E T L Y+GA++ D P F+ + +LN++++A
Sbjct 319 PTVGAFFFGSKLELVKKNSGGADEPTKDVYELQYSGAVRFDSTLPGFETIMKVLNENLNA 378
Query 360 YKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLD-DFSKQL 407
Y+ + K ++ QA ++ + P + + + S++L
Sbjct 379 YQKDGGADVVSPKPQRKGRRQAQEKKDEVDNVSVAKPKSSVQRNVSREL 427
>sp|P18447|NCAP_CVM3 Nucleoprotein OS=Murine coronavirus (strain
3) OX=11140 GN=N PE=1 SV=1
Length=454
Score = 397 bits (1019), Expect = 1e-134, Method: Composition-based stats.
Identities = 133/409 (33%), Positives = 199/409 (49%), Gaps = 34/409 (8%)
Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNN------TASWFTALTQHGK-EDLKFPRGQGVP 73
+D T N + G R++ ++ N SWF+ +TQ K ++ +F GQGVP
Sbjct 31 ADQTERGPNNQNRGRRNQPKQTATTQPNSGSVVPHYSWFSGITQFQKGKEFQFAEGQGVP 90
Query 74 INTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIW 132
I +Q GY+ R RR + DG+ K L PRWYFYYLGTGP AG YG + +G+ W
Sbjct 91 IANGIPASEQKGYWYRHNRRSFKTPDGQQKQLLPRWYFYYLGTGPHAGASYGDSIEGVFW 150
Query 133 VATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRN 192
VA A + I R+P+++ AI + GT LP+GFY EGS + AS S
Sbjct 151 VANSQADTNTRSDIVERDPSSHEAIPTRFAPGTVLPQGFYVEGSGRSAPASRSGSRSQSR 210
Query 193 SSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAA 252
N SS PA +A L+L +L + Q + VTK+SA
Sbjct 211 GPNNRARSSSNQRQPASTVKPDMAEEIAALVLAKLGKDAG---------QPKQVTKQSAK 261
Query 253 EASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFA 308
E + KPRQKRT K V Q FG+RGP Q NFG E+++ GT +P +A+ A
Sbjct 262 EVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGSEMLKLGTSDPQFPILAELA 318
Query 309 PSASAFFGMSRIGM---------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDA 359
P+ AFF S++ + E T L Y+GA++ D P F+ + +LN++++A
Sbjct 319 PTVGAFFFGSKLELVKKNSGGADEPTKDVYELQYSGAVRFDSTLPGFETIMKVLNENLNA 378
Query 360 YKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLD-DFSKQL 407
Y+ + K ++ QA ++ + P + + + S++L
Sbjct 379 YQKDGGADVVSPKPQRKGRRQAQEKKDEVDNVSVAKPKSSVQRNVSREL 427
>sp|Q02915|NCAP_CVRSD Nucleoprotein OS=Rat coronavirus (strain
681) OX=33740 GN=N PE=3 SV=1
Length=454
Score = 396 bits (1018), Expect = 2e-134, Method: Composition-based stats.
Identities = 136/406 (33%), Positives = 196/406 (48%), Gaps = 42/406 (10%)
Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNNT------ASWFTALTQHGK-EDLKFPRGQGVP 73
+D T QN G R++ ++ NT SWF+ +TQ K ++ +F GQGVP
Sbjct 31 ADQTERGQNNGNRGRRNQPKQTATTQPNTGSVVPHYSWFSGITQFQKGKEFQFAGGQGVP 90
Query 74 INTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIW 132
I P +Q GY+ R RR + DG+ K L PRWYFYYLGTGP AG +G + +G+ W
Sbjct 91 IANGIPPSEQKGYWYRHNRRSFKTPDGQQKQLLPRWYFYYLGTGPHAGASFGDSIEGVFW 150
Query 133 VATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRN 192
VA A I R+P+++ AI + GT LP+GFY EGS + AS S
Sbjct 151 VANSQADTNTSADIVERDPSSHEAIPTRFAPGTVLPQGFYVEGSGRSAPASRSGSRSQSR 210
Query 193 SSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAA 252
N SS PA +A L+L +L + Q + VTK+SA
Sbjct 211 GPNNRARSSSNQRQPASTVKPDMAEEIAALVLAKLGKDAG---------QPKQVTKQSAK 261
Query 253 EASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFA 308
E + KPRQKRT K V Q FG+RGP Q NFG E+++ GT +P +A+ A
Sbjct 262 EVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGPEMLKLGTSDPQFPILAELA 318
Query 309 PSASAFFGMSRIGM---------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDA 359
P+ AFF S++ + E T L Y+GA++ D P F+ + +LN++++A
Sbjct 319 PTPGAFFFGSKLELVKKNSGGVDEPTKDVYELQYSGAVRFDSTLPGFETIMKVLNENLNA 378
Query 360 YKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFSK 405
Y+ ++ AD PQR++ + D +K
Sbjct 379 YQ---------NQAGGADVVSPKPQRKRGTKQTAQKEELDSISVAK 415
>sp|Q83360|NCAP_CVMDV Nucleoprotein OS=Murine coronavirus (strain
DVIM) OX=231423 GN=N PE=3 SV=1
Length=455
Score = 396 bits (1016), Expect = 3e-134, Method: Composition-based stats.
Identities = 136/405 (34%), Positives = 199/405 (49%), Gaps = 44/405 (11%)
Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNN------TASWFTALTQHGK-EDLKFPRGQGVP 73
+D T N + G R++ ++ +N SWF+ +TQ K ++ +F GQGVP
Sbjct 31 ADQTERGPNNQNRGRRNQPKQTATTQSNSGSVVPHYSWFSGITQFQKGKEFQFADGQGVP 90
Query 74 INTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIW 132
I +Q GY+ R RR + DG+ K L PRWYFYYLGTGP AG YG + +G+ W
Sbjct 91 IANGIPASEQKGYWYRHNRRSFKTPDGQQKQLLPRWYFYYLGTGPHAGATYGDSIEGVFW 150
Query 133 VATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRN 192
VA A + I R+P+++ AI + GT LP+GFY EGS + AS S
Sbjct 151 VANSQADTNTRSDIVERDPSSHEAIPTRFAPGTVLPQGFYVEGSGRSAPASRSGSRSQSR 210
Query 193 SSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAA 252
S N SS PA +A L+L +L + Q + VTK+SA
Sbjct 211 GSNNRARSSSNQRQPASTVKPDMAEEIAALVLAKLGKDAG---------QPKQVTKQSAK 261
Query 253 EASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFA 308
E + KPRQKRT K V Q FG+RGP Q NFG E+++ GT +P +A+ A
Sbjct 262 EVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGSEMLKLGTSDPQFPILAELA 318
Query 309 PSASAFFGMSRIGM---------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDA 359
P+ AFF S++ + E T L Y+GAI+ D P F+ + +LN++++A
Sbjct 319 PTPGAFFFGSKLELVKKNSGGVDEPTKDVYELLYSGAIRFDSTLPGFETIMKVLNENLNA 378
Query 360 YKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFS 404
Y+ ++ D PQR+ ++Q ++D+ S
Sbjct 379 YQ---------NQAGGVDVVSPKPQRKGRRQ--AQEKKDEVDNVS 412
>sp|P18448|NCAP_CVMS Nucleoprotein OS=Murine coronavirus (strain
S) OX=11145 GN=N PE=3 SV=1
Length=454
Score = 395 bits (1015), Expect = 5e-134, Method: Composition-based stats.
Identities = 134/409 (33%), Positives = 202/409 (49%), Gaps = 34/409 (8%)
Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNN------TASWFTALTQHGK-EDLKFPRGQGVP 73
+D T N G R++ ++ N SWF+ +TQ K ++ +F +GQGVP
Sbjct 31 ADQTERAGNNGNRGRRNQPKQTATTQPNSGSVVPHYSWFSGITQFQKGKEFQFVQGQGVP 90
Query 74 INTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIW 132
I +Q GY+ R RR + DG+ K L PRWYFYYLGTGP AG YG + +G++W
Sbjct 91 IANGIPASEQKGYWYRHNRRSFKTPDGQQKQLLPRWYFYYLGTGPHAGAEYGDDIEGVVW 150
Query 133 VATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRN 192
VA++ A I R+P+++ AI + GT LP+GFY EGS + AS S
Sbjct 151 VASQQADTKTTADIVERDPSSHEAIPTRFAPGTVLPQGFYVEGSGRSAPASRSGSRSQSR 210
Query 193 SSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAA 252
N SS PA +A L+L +L + Q + VTK+SA
Sbjct 211 GPNNRARSSSNQRQPASTVKPDMAEEIAALVLAKLGKDAG---------QPKQVTKQSAK 261
Query 253 EASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFA 308
E + KPRQKRT K V Q FG+RGP Q NFG E+++ GT +P +A+ A
Sbjct 262 EVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGSEMLKLGTSDPQFPILAELA 318
Query 309 PSASAFFGMSRIGM---------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDA 359
P+A AFF S++ + E T L Y+GA++ D P F+ + +LN++++A
Sbjct 319 PTAGAFFFGSKLELVKKNSGGADEPTKDVYELQYSGAVRFDSTLPGFETIMKVLNENLNA 378
Query 360 YKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLD-DFSKQL 407
Y+ + K ++ QA ++ + P + + + S++L
Sbjct 379 YQKDGGADVVSPKPQRKGRRQAQEKKDEVDNVSVAKPKSSVQRNVSREL 427
>sp|P03417|NCAP_CVMJH Nucleoprotein OS=Murine coronavirus (strain
JHM) OX=11144 GN=N PE=1 SV=1
Length=455
Score = 393 bits (1009), Expect = 3e-133, Method: Composition-based stats.
Identities = 133/405 (33%), Positives = 199/405 (49%), Gaps = 44/405 (11%)
Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNN------TASWFTALTQHGK-EDLKFPRGQGVP 73
+D T N + G +++ ++ N SWF+ +TQ K ++ +F +GQGVP
Sbjct 31 ADQTERGLNNQNRGRKNQPKQTATTQPNSGSVVPHYSWFSGITQFQKGKEFQFAQGQGVP 90
Query 74 INTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIW 132
I Q GY+ R RR + DG+ K L PRWYFYYLGTGP AG YG + +G++W
Sbjct 91 IANGIPASQQKGYWYRHNRRSFKTPDGQQKQLLPRWYFYYLGTGPYAGAEYGDDIEGVVW 150
Query 133 VATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRN 192
VA++ A I R+P+++ AI + GT LP+GFY EGS + AS S
Sbjct 151 VASQQAETRTSADIVERDPSSHEAIPTRFAPGTVLPQGFYVEGSGRSAPASRSGSRPQSR 210
Query 193 SSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAA 252
N SS PA +A L+L +L + Q + VTK+SA
Sbjct 211 GPNNRARSSSNQRQPASTVKPDMAEEIAALVLAKLGKDAG---------QPKQVTKQSAK 261
Query 253 EASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFA 308
E + KPRQKRT K V Q FG+RGP Q NFG E+++ GT +P +A+ A
Sbjct 262 EVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGPEMLKLGTSDPQFPILAELA 318
Query 309 PSASAFFGMSRIGME---------VTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDA 359
P+A AFF S++ + T L Y+GA++ D P F+ + +LN++++A
Sbjct 319 PTAGAFFFGSKLELVKKNSGGADGPTKDVYELQYSGAVRFDSTLPGFETIMKVLNENLNA 378
Query 360 YKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFS 404
Y+ ++ AD PQR++ + ++D+ S
Sbjct 379 YQ---------NQDGGADVVSPKPQRKRGTKQKAQK--DEVDNVS 412
>sp|Q5MQC6|NCAP_CVHN1 Nucleoprotein OS=Human coronavirus HKU1
(isolate N1) OX=443239 GN=N PE=1 SV=1
Length=441
Score = 391 bits (1004), Expect = 1e-132, Method: Composition-based stats.
Identities = 133/420 (32%), Positives = 209/420 (50%), Gaps = 44/420 (10%)
Query 21 SDSTGSNQNGERSGARSKQR-----RPQGLPNNTASWFTALTQHGK-EDLKFPRGQGVPI 74
+D + N G +++ + +PQG SWF+ +TQ K D KF GQGVPI
Sbjct 28 ADQSERNYQTFNRGRKTQPKFTVSTQPQGNTIPHYSWFSGITQFQKGRDFKFSDGQGVPI 87
Query 75 NTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWV 133
P + GY+ R +RR + DG+ K L PRWYFYYLGTGP A YG + +G+ WV
Sbjct 88 AFGVPPSEAKGYWYRHSRRSFKTADGQQKQLLPRWYFYYLGTGPYANASYGESLEGVFWV 147
Query 134 ATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNS 193
A A + + +R+P AI + P GT LP+G+Y EGS G S ++SR SRS++
Sbjct 148 ANHQADTSTPSDVSSRDPTTQEAIPTRFPPGTILPQGYYVEGS-GRSASNSRPGSRSQSR 206
Query 194 SRNS---TPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKS 250
N+ + +S + +A L+L +L G+ + Q VTK++
Sbjct 207 GPNNRSLSRSNSNFRHSDSIVKPDMADEIANLVLAKL----------GKDSKPQQVTKQN 256
Query 251 AAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQ 306
A E KPRQKRT K NV Q FG+RGP Q NFG+ E+++ GT+ +P +A+
Sbjct 257 AKEIRHKILTKPRQKRTPNKHCNVQQCFGKRGPSQ---NFGNAEMLKLGTNDPQFPILAE 313
Query 307 FAPSASAFFGMSRIGM--------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHID 358
AP+ AFF S++ + L Y+G+I+ D P F+ + +L ++++
Sbjct 314 LAPTPGAFFFGSKLDLVKRDSEADSPVKDVFELHYSGSIRFDSTLPGFETIMKVLEENLN 373
Query 359 AYKTFPPTEPKKDKKKKADETQALPQRQKK-QQTVTLLPAADLDDFSKQLQQSMSSADST 417
AY ++ +D + PQR++ +Q + +L ++ + + D +
Sbjct 374 AY-------VNSNQNTDSDSLSSKPQRKRGVKQLPEQFDSLNLSAGTQHISNDFTPEDHS 426
>sp|Q64960|NCAP_IBVAR Nucleoprotein OS=Avian infectious bronchitis
virus (strain Arkansas 99) OX=231471 GN=N PE=3 SV=1
Length=409
Score = 389 bits (999), Expect = 2e-132, Method: Composition-based stats.
Identities = 106/395 (27%), Positives = 163/395 (41%), Gaps = 44/395 (11%)
Query 12 APRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALT--QHGKEDLKFPRG 69
AP I GGP + P+ + ASWF A+ + KF G
Sbjct 14 APVIKLGGP-------------------KPPKVGSSGNASWFQAIKAKKLNSHPPKF-EG 53
Query 70 QGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDG 129
GVP N N Q GY+RR R + G K + WYFYY GTGP A L +G ++DG
Sbjct 54 SGVPDNENLKTSQQHGYWRRQAR-FKPVKGGRKPVPDAWYFYYTGTGPAADLNWGDSQDG 112
Query 130 IIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSR 189
I+WVA +GA + H GTR+P L+ S GG + R
Sbjct 113 IVWVAAKGADVKSRSHQGTRDPDKFDQYPLRF--------------SDGGPDGNFRWDFI 158
Query 190 SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKK 249
N R+ ++ + +R G D L +K+ + QQ++G +TK
Sbjct 159 PLNRGRSGRSTAASSAASSRAPSRDGSRGRRSGSEDDLIARAAKII-QDQQKKGSRITKV 217
Query 250 SAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAP 309
A E + + KRT Y V Q FG R + +GNFGD ++ +G + P
Sbjct 218 KADEMAHRRYCKRTIPPGYKVDQVFGPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVP 276
Query 310 SASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPK 369
S+ A SR+ ++ P G L + + DP F + V + ++ +D T P +
Sbjct 277 SSHACLFGSRVTPKLQPDGLHLKFEFTTVVPRDDPQFDNYVKICDQCVDGVGTRPKDDEP 336
Query 370 KDKKKKADE-----TQALPQRQKKQQTVTLLPAAD 399
+ K + + + P++Q+ ++ D
Sbjct 337 RPKSRSSSRPATRTSSPAPRQQRPKKEKKPKKQDD 371
>sp|Q9PY96|NCAP_CVM2 Nucleoprotein OS=Murine coronavirus (strain
2) OX=76344 GN=N PE=2 SV=1
Length=451
Score = 390 bits (1001), Expect = 5e-132, Method: Composition-based stats.
Identities = 132/410 (32%), Positives = 200/410 (49%), Gaps = 39/410 (10%)
Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNN------TASWFTALTQHGK-EDLKFPRGQGVP 73
+D T G R+ ++ N SWF+ +TQ K ++ +F +GQGVP
Sbjct 31 ADQTER----GNRGRRNHPKQTATTQPNAGSVVPHYSWFSGITQFQKGKEFQFAQGQGVP 86
Query 74 INTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIW 132
I + +Q GY+ R RR + DG+ K L PRWYFYYLGTGP AG YG + +G++W
Sbjct 87 IASGIPASEQKGYWYRHNRRSFKTPDGQHKQLLPRWYFYYLGTGPHAGAEYGDDIEGVVW 146
Query 133 VATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRN 192
VA++ A + R+P+++ AI + GT LP+GFY EGS + AS S
Sbjct 147 VASQQADTKTTADVVERDPSSHEAIPTRFAPGTVLPQGFYVEGSGRSAPASRSGSRSQSR 206
Query 193 SSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAA 252
N SS PA +A L+L +L + Q + VTK+SA
Sbjct 207 GPNNRARSSSNQRQPASAVKPDMAEEIAALVLAKLGKDAG---------QPKQVTKQSAK 257
Query 253 EASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFA 308
E + KPRQKRT K V Q FG+RGP Q NFG E+++ GT +P +A+ A
Sbjct 258 EVRQKILTKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGSEMLKLGTSDPQFPILAELA 314
Query 309 PSASAFFGMSRIGM---------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDA 359
P+ SAFF S++ + E T L Y+GAI+ D P F+ + +L ++++A
Sbjct 315 PTPSAFFFGSKLELVKKNSGGADEPTKDVYELQYSGAIRFDSTLPGFETIMKVLTENLNA 374
Query 360 YKTFPPT-EPKKDKKKKADETQALPQRQKKQQTVTLLPAADLD-DFSKQL 407
Y+ + + K + QA ++ + P + + + S++L
Sbjct 375 YQDQAGSVDLVSPKPPRRGRRQAQEKKDEVDNVSVAKPKSLVQRNVSREL 424
>sp|Q9WCD0|NCAP_CVRNJ Nucleoprotein OS=Rat coronavirus (strain
NJ) OX=231433 GN=N PE=3 SV=1
Length=454
Score = 390 bits (1001), Expect = 6e-132, Method: Composition-based stats.
Identities = 135/405 (33%), Positives = 195/405 (48%), Gaps = 44/405 (11%)
Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNN------TASWFTALTQHGK-EDLKFPRGQGVP 73
+D T N G R++ ++ N SWF+ +TQ K ++ +F GQGVP
Sbjct 31 ADQTERAGNNGNRGRRNQPKQTATTQPNSGSVVPHYSWFSGITQFQKGKEFQFADGQGVP 90
Query 74 INTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIW 132
I +Q GY+ R RR + DG+ K L PRWYFYYLGTGP AG YG + +G+ W
Sbjct 91 IANGIPATEQKGYWYRHNRRSFKTPDGQQKQLLPRWYFYYLGTGPHAGAIYGDSIEGVFW 150
Query 133 VATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRN 192
VA A + I R+P+++ AI + GT LP+GFY EGS + AS S
Sbjct 151 VANSQADTNTRADIVERDPSSHEAIPTRFAPGTVLPQGFYVEGSGRSAPASRSGSRSQSR 210
Query 193 SSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAA 252
N SS PA +A L+L +L + Q + VTK+SA
Sbjct 211 GPSNRARSSSNQRQPASTVKPDMAEEIAALVLAKLGKDAG---------QPKQVTKQSAK 261
Query 253 EASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFA 308
E + KPRQKRT K V Q FG+RGP Q NFG E+++ GT +P +A+ A
Sbjct 262 EVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGSEMLKLGTSDPQFPILAELA 318
Query 309 PSASAFFGMSRIGM---------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDA 359
P+ AFF S++ + E T L Y+GAI+ D P F+ + +LN++++A
Sbjct 319 PTPGAFFFGSKLELVKKNSGGADEPTKDVYELQYSGAIRFDSTLPGFETIMKVLNENLNA 378
Query 360 YKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFS 404
Y+ + D PQR+ ++Q ++D+ S
Sbjct 379 YQ---------KEAGGVDVVSPKPQRKGRRQ--AQEKKDEVDNVS 412
>sp|Q8JMI6|NCAP_IBVSA Nucleoprotein OS=Avian infectious bronchitis
virus (strain SAIB20) OX=231426 GN=N PE=2 SV=1
Length=409
Score = 387 bits (994), Expect = 1e-131, Method: Composition-based stats.
Identities = 104/376 (28%), Positives = 160/376 (43%), Gaps = 23/376 (6%)
Query 37 SKQRRPQGLPNNTASWFTALT--QHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRI 94
R P+ + ASWF A+ + KF G GVP N N Q GY+RR R
Sbjct 20 GGPRPPKVGSSGNASWFQAIKAKKLNSPQPKF-EGSGVPDNENLKTSQQHGYWRRQAR-F 77
Query 95 RGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANN 154
+ G G K + WYFYY GTGP A L +G ++DGI+WVA +GA + + GTR+P
Sbjct 78 KPGKGGRKPVPDAWYFYYTGTGPAADLNWGDSQDGIVWVAAKGADVKSRSNQGTRDPDKF 137
Query 155 AAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNG 214
L+ S GG + R N R+ ++ + +R
Sbjct 138 DQYPLRF--------------SDGGPDGNFRWDFIPLNRGRSGRSTAASSAASSRPPSRE 183
Query 215 GDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAF 274
G D L +K+ + QQ++G +TK A E + + KRT Y V Q F
Sbjct 184 GSRGRRSGSEDDLIARAAKII-QDQQKKGSRITKAKADEMAHRRYCKRTIPPGYKVDQVF 242
Query 275 GRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYT 334
G R + +GNFGD ++ +G + PS+ A SR+ ++ P G L +
Sbjct 243 GPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQPDGLHLKFE 301
Query 335 GAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADE---TQALPQRQKKQQT 391
+ DP F + V + ++ +D T P + K K + + + P ++++
Sbjct 302 FTTVVPRDDPQFDNYVKICDQCVDGVGTRPKDDEPKPKSRSSSRPATRTSSPAPRQQRLK 361
Query 392 VTLLPAADLDDFSKQL 407
P D+ K L
Sbjct 362 KEKRPKKQDDEVDKAL 377
>sp|Q0ZME3|NCAP_CVHN5 Nucleoprotein OS=Human coronavirus HKU1
(isolate N5) OX=443241 GN=N PE=3 SV=1
Length=441
Score = 388 bits (996), Expect = 2e-131, Method: Composition-based stats.
Identities = 133/419 (32%), Positives = 206/419 (49%), Gaps = 44/419 (11%)
Query 22 DSTGSNQNGERSGARSKQR-----RPQGLPNNTASWFTALTQHGK-EDLKFPRGQGVPIN 75
D + + G + + + +PQG P SWF+ +TQ K D KFP GQGVPI
Sbjct 29 DQSERSHQTYNRGRKPQPKFTVSTQPQGNPIPHYSWFSGITQFQKGRDFKFPDGQGVPIA 88
Query 76 TNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVA 134
P + GY+ + RR + DG+ K L PRWYFYYLGTGP A YG +GI WVA
Sbjct 89 YGIPPSEAKGYWYKHNRRSFKTADGQQKQLLPRWYFYYLGTGPYASSSYGDAHEGIFWVA 148
Query 135 TEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSS 194
+ A + + R+P AI + GT LP+G+Y EGS G S ++SR SRS++
Sbjct 149 SHQADTSIPSDVSARDPTIQEAIPTRFSPGTILPQGYYVEGS-GRSASNSRPGSRSQSRG 207
Query 195 RNS---TPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSA 251
N+ + +S + +A L+L +L G+ + Q VTK++A
Sbjct 208 PNNRSLSRSNSNFRHSDSIVKPDMADEIASLVLAKL----------GKDSKPQQVTKQNA 257
Query 252 AEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQF 307
E KPRQKRT K NV Q FG+RGP Q NFG+ E+++ GT+ +P +A+
Sbjct 258 KEIRHKILMKPRQKRTPNKFCNVQQCFGKRGPLQ---NFGNSEMLKLGTNDPQFPILAEL 314
Query 308 APSASAFFGMSRIGM--------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDA 359
AP+ AFF S++ + + L Y+G+I+ D P F+ + +L +++DA
Sbjct 315 APTPGAFFFGSKLELFKRDSDADSPSKDTFELRYSGSIRFDSTLPGFETIMKVLKENLDA 374
Query 360 YKTFPPTEPKKDKKKKADETQALPQRQKK-QQTVTLLPAADLDDFSKQLQQSMSSADST 417
Y ++ + PQR++ +Q+ + +L ++ + + D +
Sbjct 375 Y-------VNSNQNTVSGSLSPKPQRKRGVKQSPESFDSLNLSADTQHISNDFTPEDHS 426
>sp|Q14EA6|NCAP_CVHN2 Nucleoprotein OS=Human coronavirus HKU1
(isolate N2) OX=443240 GN=N PE=3 SV=1
Length=441
Score = 388 bits (996), Expect = 2e-131, Method: Composition-based stats.
Identities = 133/419 (32%), Positives = 206/419 (49%), Gaps = 44/419 (11%)
Query 22 DSTGSNQNGERSGARSKQR-----RPQGLPNNTASWFTALTQHGK-EDLKFPRGQGVPIN 75
D + + G + + + +PQG P SWF+ +TQ K D KFP GQGVPI
Sbjct 29 DQSERSHQTYNRGRKPQPKFTVSTQPQGNPIPHYSWFSGITQFQKGRDFKFPDGQGVPIA 88
Query 76 TNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVA 134
P + GY+ + RR + DG+ K L PRWYFYYLGTGP A YG +GI WVA
Sbjct 89 YGIPPSEAKGYWYKHNRRSFKTADGQQKQLLPRWYFYYLGTGPYASSSYGDAHEGIFWVA 148
Query 135 TEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSS 194
+ A + + R+P AI + GT LP+G+Y EGS G S ++SR SRS++
Sbjct 149 SHQADTSIPSDVSARDPTIQEAIPTRFSPGTILPQGYYVEGS-GRSASNSRPGSRSQSRG 207
Query 195 RNS---TPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSA 251
N+ + +S + +A L+L +L G+ + Q VTK++A
Sbjct 208 PNNRSLSRSNSNFRHSDSIVKPDMADEIASLVLAKL----------GKDSKPQQVTKQNA 257
Query 252 AEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQF 307
E KPRQKRT K NV Q FG+RGP Q NFG+ E+++ GT+ +P +A+
Sbjct 258 KEIRHKILMKPRQKRTPNKFCNVQQCFGKRGPLQ---NFGNSEMLKLGTNDPQFPILAEL 314
Query 308 APSASAFFGMSRIGM--------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDA 359
AP+ AFF S++ + + L Y+G+I+ D P F+ + +L +++DA
Sbjct 315 APTPGAFFFGSKLELFKRDSDADSPSKDTFELRYSGSIRFDSTLPGFETIMKVLKENLDA 374
Query 360 YKTFPPTEPKKDKKKKADETQALPQRQKK-QQTVTLLPAADLDDFSKQLQQSMSSADST 417
Y ++ + PQR++ +Q+ + +L ++ + + D +
Sbjct 375 Y-------VNSNQNTVSGSLSPKPQRKRGVKQSPESFDSLNLSADTQHISNDFTPEDHS 426
>sp|Q9PZ50|NCAP_CVTMI Nucleoprotein OS=Turkey coronavirus (strain
Minnesota) OX=231430 GN=N PE=3 SV=1
Length=409
Score = 386 bits (992), Expect = 3e-131, Method: Composition-based stats.
Identities = 102/370 (28%), Positives = 157/370 (42%), Gaps = 25/370 (7%)
Query 37 SKQRRPQGLPNNTASWFTALT--QHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRI 94
+ P+ + ASWF A+ + KF G GVP N N P Q GY+RR R
Sbjct 20 GGPKPPKVGSSGNASWFQAIKAKKLNSPPPKF-EGSGVPDNENLKPGQQHGYWRRQAR-F 77
Query 95 RGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANN 154
+ G K + WYFYY GTGP A L +G ++DGI+WVA +GA + + GTR+P
Sbjct 78 KPSKGGRKPVPDAWYFYYTGTGPAADLNWGDSQDGIVWVAAKGADVKSRSNQGTRDPDKF 137
Query 155 AAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNG 214
L+ S GG + R N R+ ++ + R
Sbjct 138 DQYPLRF--------------SDGGPDGNFRWDFIPLNRGRSGRSTAASSAASTRAPSRE 183
Query 215 GDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAF 274
G D L +K+ + QQ++G +TK A E + + KRT Y V Q F
Sbjct 184 GSRGRRSGSEDDLIARAAKII-QDQQRKGSRITKAKADEMAHRRYCKRTIPPGYKVDQVF 242
Query 275 GRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYT 334
G R + +GNFGD ++ +G + PS+ A SR+ ++ P G L +
Sbjct 243 GPRT-KGKEGNFGDDKMNEEGITDGRVTAMLNLVPSSHACLFGSRVTPKLQPDGLHLKFE 301
Query 335 GAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADE-----TQALPQRQKKQ 389
+ DP F + V + ++ ID T P + K K + + + P++Q+ +
Sbjct 302 FTTVVPRDDPQFDNYVKICDQCIDGVGTRPKDDEPKPKSRSSSRPATRTSSPAPRQQRSK 361
Query 390 QTVTLLPAAD 399
+ D
Sbjct 362 KEKKPKKQDD 371
>sp|P32923|NCAP_IBVG Nucleoprotein OS=Avian infectious bronchitis
virus (strain Gray) OX=31624 GN=N PE=1 SV=2
Length=409
Score = 386 bits (990), Expect = 5e-131, Method: Composition-based stats.
Identities = 104/376 (28%), Positives = 161/376 (43%), Gaps = 23/376 (6%)
Query 37 SKQRRPQGLPNNTASWFTALT--QHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRI 94
R P+ + ASWF A+ + KF G GVP N N Q GY+RR R
Sbjct 20 GGPRPPKVGSSGNASWFQAIKAKKLNSPQPKF-EGSGVPDNENFKTSQQHGYWRRQAR-F 77
Query 95 RGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANN 154
+ G G+ K + WYFYY GTGP A L +G ++DGI+WVA +GA + + GTR+P
Sbjct 78 KPGKGRRKPVPDAWYFYYTGTGPAADLNWGDSQDGIVWVAAKGADVKSRSNQGTRDPDKF 137
Query 155 AAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNG 214
L+ S GG + R N R+ ++ + +R
Sbjct 138 DQYPLRF--------------SDGGPDGNFRWDFIPLNRGRSGRSTAASSAASSRPPSRE 183
Query 215 GDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAF 274
G D L +K+ + QQ++G +TK A E + + KRT Y V Q F
Sbjct 184 GSRGRRSGSEDDLIARAAKII-QDQQKKGSRITKAKADEMAHRRYCKRTIPPGYKVDQVF 242
Query 275 GRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYT 334
G R + +GNFGD ++ +G + PS+ A SR+ ++ P G L +
Sbjct 243 GPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQPDGLHLKFE 301
Query 335 GAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADE---TQALPQRQKKQQT 391
+ DP F + V + ++ +D T P + K K + + + P ++++
Sbjct 302 FTTVVPRDDPQFDNYVKICDQCVDGVGTRPKDDEPKPKSRSSSRPATRTSSPAPRQQRLK 361
Query 392 VTLLPAADLDDFSKQL 407
P D+ K L
Sbjct 362 KEKRPKKQDDEVDKAL 377
>sp|P69598|NCAP_IBVBU Nucleoprotein OS=Avian infectious bronchitis
virus (strain Beaudette US) OX=160750 GN=N PE=1 SV=1
Length=409
Score = 385 bits (989), Expect = 8e-131, Method: Composition-based stats.
Identities = 106/383 (28%), Positives = 159/383 (42%), Gaps = 44/383 (11%)
Query 12 APRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALT--QHGKEDLKFPRG 69
AP I GGP + P+ + ASWF A+ + KF G
Sbjct 14 APVIKLGGP-------------------KPPKVGSSGNASWFQAIKAKKLNTPPPKF-EG 53
Query 70 QGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDG 129
GVP N N P Q GY+RR R + G G K + WYFYY GTGP A L +G +DG
Sbjct 54 SGVPDNENIKPSQQHGYWRRQAR-FKPGKGGRKPVPDAWYFYYTGTGPAADLNWGDTQDG 112
Query 130 IIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSR 189
I+WVA +GA + + GTR+P L+ S GG + R
Sbjct 113 IVWVAAKGADTKSRSNQGTRDPDKFDQYPLRF--------------SDGGPDGNFRWDFI 158
Query 190 SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKK 249
N R+ ++ + +R G D L +K+ + QQ++G +TK
Sbjct 159 PLNRGRSGRSTAASSAAASRAPSREGSRGRRSDSGDDLIARAAKII-QDQQKKGSRITKA 217
Query 250 SAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAP 309
A E + + KRT Y V Q FG R + +GNFGD ++ +G + P
Sbjct 218 KADEMAHRRYCKRTIPPNYRVDQVFGPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVP 276
Query 310 SASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPK 369
S+ A SR+ ++ G L + + DP F + V + ++ +D T P +
Sbjct 277 SSHACLFGSRVTPKLQLDGLHLRFEFTTVVPCDDPQFDNYVKICDQCVDGVGTRPKDDEP 336
Query 370 KDKKKKADE-----TQALPQRQK 387
K K + + P++Q+
Sbjct 337 KPKSRSSSRPATRGNSPAPRQQR 359
>sp|P69597|NCAP_IBVBC Nucleoprotein OS=Avian infectious bronchitis
virus (strain Beaudette CK) OX=160235 GN=N PE=1 SV=1
Length=409
Score = 385 bits (989), Expect = 8e-131, Method: Composition-based stats.
Identities = 106/383 (28%), Positives = 159/383 (42%), Gaps = 44/383 (11%)
Query 12 APRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALT--QHGKEDLKFPRG 69
AP I GGP + P+ + ASWF A+ + KF G
Sbjct 14 APVIKLGGP-------------------KPPKVGSSGNASWFQAIKAKKLNTPPPKF-EG 53
Query 70 QGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDG 129
GVP N N P Q GY+RR R + G G K + WYFYY GTGP A L +G +DG
Sbjct 54 SGVPDNENIKPSQQHGYWRRQAR-FKPGKGGRKPVPDAWYFYYTGTGPAADLNWGDTQDG 112
Query 130 IIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSR 189
I+WVA +GA + + GTR+P L+ S GG + R
Sbjct 113 IVWVAAKGADTKSRSNQGTRDPDKFDQYPLRF--------------SDGGPDGNFRWDFI 158
Query 190 SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKK 249
N R+ ++ + +R G D L +K+ + QQ++G +TK
Sbjct 159 PLNRGRSGRSTAASSAAASRAPSREGSRGRRSDSGDDLIARAAKII-QDQQKKGSRITKA 217
Query 250 SAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAP 309
A E + + KRT Y V Q FG R + +GNFGD ++ +G + P
Sbjct 218 KADEMAHRRYCKRTIPPNYRVDQVFGPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVP 276
Query 310 SASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPK 369
S+ A SR+ ++ G L + + DP F + V + ++ +D T P +
Sbjct 277 SSHACLFGSRVTPKLQLDGLHLRFEFTTVVPCDDPQFDNYVKICDQCVDGVGTRPKDDEP 336
Query 370 KDKKKKADE-----TQALPQRQK 387
K K + + P++Q+
Sbjct 337 KPKSRSSSRPATRGNSPAPRQQR 359
>sp|P69596|NCAP_IBVB Nucleoprotein OS=Avian infectious bronchitis
virus (strain Beaudette) OX=11122 GN=N PE=1 SV=1
Length=409
Score = 385 bits (989), Expect = 8e-131, Method: Composition-based stats.
Identities = 106/383 (28%), Positives = 159/383 (42%), Gaps = 44/383 (11%)
Query 12 APRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALT--QHGKEDLKFPRG 69
AP I GGP + P+ + ASWF A+ + KF G
Sbjct 14 APVIKLGGP-------------------KPPKVGSSGNASWFQAIKAKKLNTPPPKF-EG 53
Query 70 QGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDG 129
GVP N N P Q GY+RR R + G G K + WYFYY GTGP A L +G +DG
Sbjct 54 SGVPDNENIKPSQQHGYWRRQAR-FKPGKGGRKPVPDAWYFYYTGTGPAADLNWGDTQDG 112
Query 130 IIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSR 189
I+WVA +GA + + GTR+P L+ S GG + R
Sbjct 113 IVWVAAKGADTKSRSNQGTRDPDKFDQYPLRF--------------SDGGPDGNFRWDFI 158
Query 190 SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKK 249
N R+ ++ + +R G D L +K+ + QQ++G +TK
Sbjct 159 PLNRGRSGRSTAASSAAASRAPSREGSRGRRSDSGDDLIARAAKII-QDQQKKGSRITKA 217
Query 250 SAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAP 309
A E + + KRT Y V Q FG R + +GNFGD ++ +G + P
Sbjct 218 KADEMAHRRYCKRTIPPNYRVDQVFGPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVP 276
Query 310 SASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPK 369
S+ A SR+ ++ G L + + DP F + V + ++ +D T P +
Sbjct 277 SSHACLFGSRVTPKLQLDGLHLRFEFTTVVPCDDPQFDNYVKICDQCVDGVGTRPKDDEP 336
Query 370 KDKKKKADE-----TQALPQRQK 387
K K + + P++Q+
Sbjct 337 KPKSRSSSRPATRGNSPAPRQQR 359
>sp|P12648|NCAP_IBVK Nucleoprotein OS=Avian infectious bronchitis
virus (strain KB8523) OX=11126 GN=N PE=3 SV=1
Length=409
Score = 385 bits (988), Expect = 1e-130, Method: Composition-based stats.
Identities = 106/395 (27%), Positives = 163/395 (41%), Gaps = 44/395 (11%)
Query 12 APRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALT--QHGKEDLKFPRG 69
AP I GGP + P+ + ASWF A+ + LKF G
Sbjct 14 APVIKLGGP-------------------KPPKVGSSGNASWFQAIKAKKLNSPPLKF-EG 53
Query 70 QGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDG 129
GVP N N Q GY+RR R + G K + WYFYY GTGP A L +G ++DG
Sbjct 54 SGVPDNENLKTSQQHGYWRRQAR-FKPSKGGRKPVPDAWYFYYTGTGPAADLNWGDSQDG 112
Query 130 IIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSR 189
I+WVA +GA + + GTR+P L+ S GG + R
Sbjct 113 IVWVAAKGADTKSRSNQGTRDPDKFDQYPLRF--------------SDGGPDGNFRWDFI 158
Query 190 SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKK 249
N R+ ++ + +R G D L +K+ + QQ++G +TK
Sbjct 159 PLNRGRSGKSTAASSAASSRAPSREGSRGRRSGAEDDLIARAAKII-QDQQKKGARITKA 217
Query 250 SAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAP 309
A E + + KRT Y V Q FG R + +GNFGD ++ +G + P
Sbjct 218 KADEMAHRRYCKRTIPPGYKVDQVFGPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVP 276
Query 310 SASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPK 369
S+ A SR+ ++ P G L + + DP F + V + ++ +D T P +
Sbjct 277 SSHACLFGSRVTPKLQPDGLHLKFEFTTVVSRNDPQFDNYVKICDQCVDGVGTRPKDDEP 336
Query 370 KDKKKKADE-----TQALPQRQKKQQTVTLLPAAD 399
K K + + + P++ + ++ D
Sbjct 337 KPKSRSSSRPATRTSSPAPRQPRPKKEKKTKKQDD 371
>sp|Q9J4A3|NCAP_IBVD1 Nucleoprotein OS=Avian infectious bronchitis
virus (strain D1466) OX=231472 GN=N PE=3 SV=1
Length=409
Score = 383 bits (983), Expect = 8e-130, Method: Composition-based stats.
Identities = 103/377 (27%), Positives = 154/377 (41%), Gaps = 39/377 (10%)
Query 12 APRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALT--QHGKEDLKFPRG 69
AP I GGP + P+ + ASWF AL + KF G
Sbjct 14 APVIKLGGP-------------------KPPKVGSSGNASWFQALKAKKLNSPPPKF-EG 53
Query 70 QGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDG 129
GVP N N Q GY+RR R + G G K + WYFYY GTGP A L +G ++DG
Sbjct 54 SGVPDNENLKLSQQHGYWRRQAR-YKPGKGGRKSVPDAWYFYYTGTGPAADLNWGYSQDG 112
Query 130 IIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSR 189
I+WV+ +GA + + GTR+P L+ S GG + R
Sbjct 113 IVWVSAKGADTKSRSNQGTRDPDKFDQYPLRF--------------SDGGPDGNFRWDFI 158
Query 190 SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKK 249
N R+ ++ + +R G D L +K+ + QQ++G +TK
Sbjct 159 PINRGRSGRSTAASSAASSRAPSRDGSRGRRSGAEDDLIARAAKII-QDQQKKGSRITKA 217
Query 250 SAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAP 309
A E + + KRT Y V Q FG R + +GNFGD ++ +G + P
Sbjct 218 KADEMAHRRYCKRTIPPGYKVDQVFGPRT-KCKEGNFGDDKMNEEGIKDGRVTAMLNLVP 276
Query 310 SASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPK 369
S+ A SR+ ++ P G L + + DP F + V + ++ +D T P +
Sbjct 277 SSHACLFGSRVTPKLQPDGLHLRFEFTTVVSRDDPQFDNYVKICDQCVDGVGTRPKDDEP 336
Query 370 KDKKKKADETQALPQRQ 386
+ K +
Sbjct 337 RPKSRPNSRPATRTSSP 353
>sp|Q9PZ49|NCAP_CVTNC Nucleoprotein OS=Turkey coronavirus (strain
NC95) OX=231431 GN=N PE=3 SV=1
Length=409
Score = 382 bits (981), Expect = 1e-129, Method: Composition-based stats.
Identities = 98/370 (26%), Positives = 156/370 (42%), Gaps = 25/370 (7%)
Query 37 SKQRRPQGLPNNTASWFTALT--QHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRI 94
+ P+ + ASWF ++ + KF G GVP N N Q GY+RR R
Sbjct 20 GGPKPPKVGSSGNASWFQSIKAKKLNSPQPKF-EGSGVPDNENIKTSQQHGYWRRQAR-F 77
Query 95 RGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANN 154
+ G G K + WYFYY GTGP A L +G +DGI+WVA +GA + + GTR+P
Sbjct 78 KPGKGGRKPVPDAWYFYYTGTGPAADLNWGDTQDGIVWVAAKGADVKSRSNQGTRDPDKF 137
Query 155 AAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNG 214
L+ S GG ++ R + R+ ++ + +R
Sbjct 138 DQYPLRF--------------SDGGPDSNFRWDFIPLHRGRSGRSTAASSAASSRAPSRD 183
Query 215 GDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAF 274
G D L +K+ + QQ++G +TK A E + + KRT Y V Q F
Sbjct 184 GSRGRRSGSEDDLIARAAKII-QDQQKKGSRITKAKADEMAHRRYCKRTVPPGYKVDQVF 242
Query 275 GRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYT 334
G R + +GNFGD ++ +G + PS+ A SR+ ++ P G L +
Sbjct 243 GPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQPDGLHLRFE 301
Query 335 GAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADE-----TQALPQRQKKQ 389
+ DP F + V + ++ +D T P + K + + P++Q+ +
Sbjct 302 FTTVVPRDDPQFDNYVTICDQCVDGIGTRPKDNEPRPKSRPSSRPATRGNSPAPRQQRPK 361
Query 390 QTVTLLPAAD 399
+ D
Sbjct 362 KEKKPKKQDD 371
>sp|Q9J4B0|NCAP_IBVDE Nucleoprotein OS=Avian infectious bronchitis
virus (strain DE072) OX=233265 GN=N PE=3 SV=1
Length=409
Score = 382 bits (981), Expect = 2e-129, Method: Composition-based stats.
Identities = 101/377 (27%), Positives = 152/377 (40%), Gaps = 39/377 (10%)
Query 12 APRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALT--QHGKEDLKFPRG 69
AP I GGP + P+ + ASWF A+ + KF G
Sbjct 14 APVIKLGGP-------------------KPPKVGSSGNASWFQAIKAKKLNSPQPKF-EG 53
Query 70 QGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDG 129
GVP N N Q GY+RR R + G K + WYFYY GTGP A L +G ++DG
Sbjct 54 SGVPDNENLKTSQQHGYWRRQLR-FKPSKGGRKPVPDAWYFYYTGTGPAADLNWGDSQDG 112
Query 130 IIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSR 189
I+WVA +GA + + GTR+P L+ S GG + R
Sbjct 113 IVWVAAKGADVKSRSNQGTRDPDKFDQYPLRF--------------SDGGPDGNFRWDFI 158
Query 190 SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKK 249
N R+ ++ + +R G L +K+ + QQ++G +TK
Sbjct 159 PLNRGRSGRSTAASSAASSRAPSRDGSRGRRSGSEGDLIARAAKII-QDQQKRGSRITKA 217
Query 250 SAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAP 309
A E + + KRT Y V Q FG R + +GNFGD ++ +G + P
Sbjct 218 KADEMAHRRYCKRTIPPGYKVDQVFGPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVP 276
Query 310 SASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPK 369
S+ A SR+ ++ P G L + DP F + V + ++ +D T P +
Sbjct 277 SSHACLFGSRVTPKLQPDGLHLKIEFTTVVSRDDPQFDNYVKICDQCVDGVGTRPKDDEP 336
Query 370 KDKKKKADETQALPQRQ 386
+ K + +
Sbjct 337 RPKSRSSSRPATRTSSP 353
>sp|Q82616|NCAP_IBVM Nucleoprotein OS=Avian infectious bronchitis
virus (strain M41) OX=11127 GN=N PE=3 SV=1
Length=409
Score = 381 bits (978), Expect = 4e-129, Method: Composition-based stats.
Identities = 102/395 (26%), Positives = 160/395 (41%), Gaps = 44/395 (11%)
Query 12 APRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALT--QHGKEDLKFPRG 69
AP I GGP + P+ + ASWF A+ + KF G
Sbjct 14 APVIKLGGP-------------------KPPKVGSSGNASWFQAIKANKLNIPPPKF-EG 53
Query 70 QGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDG 129
GVP N N Q GY+RR + G G K + WYFYY GTGP A L +G ++DG
Sbjct 54 SGVPDNENLKSSQQHGYWRRQA-TFKPGKGGRKPVPDAWYFYYTGTGPAANLNWGDSQDG 112
Query 130 IIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSR 189
I+WVA +GA + + GTR+ L+ S GG + R
Sbjct 113 IVWVAGKGADTKFRSNQGTRDSDKFDQYPLRF--------------SDGGPDGNFRWDFI 158
Query 190 SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKK 249
N R+ ++ + +R D L +++ + QQ++G +TK
Sbjct 159 PLNGGRSGRSTAASSAASSRAPSREVSRGRRSGSEDDLIARAARII-QDQQKKGSRITKA 217
Query 250 SAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAP 309
A E + + KRT Y V Q FG R + +GNFGD ++ +G + P
Sbjct 218 KADEMAHRRYCKRTIPPNYKVDQVFGPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVP 276
Query 310 SASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPK 369
S+ A SR+ ++ P G L + + DP F + V + ++ +D T P +
Sbjct 277 SSHACLFGSRVTPKLQPDGLHLKFEFTTVVPRDDPQFDNYVKICDQCVDGVGTRPKDDEP 336
Query 370 KDKKKKADE-----TQALPQRQKKQQTVTLLPAAD 399
+ K + + P++Q+ ++ D
Sbjct 337 RPKSRSSSRPATRGNSPAPRQQRPKKEKKPKKHDD 371
>sp|Q98WJ7|NCAP_IBVH1 Nucleoprotein OS=Avian infectious bronchitis
virus (strain H120) OX=231424 GN=N PE=3 SV=1
Length=409
Score = 381 bits (978), Expect = 4e-129, Method: Composition-based stats.
Identities = 103/377 (27%), Positives = 154/377 (41%), Gaps = 39/377 (10%)
Query 12 APRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALT--QHGKEDLKFPRG 69
AP I GGP + P+ + ASWF AL + KF G
Sbjct 14 APVIKLGGP-------------------KPPKVGSSGNASWFQALKAKKLNSPPPKF-EG 53
Query 70 QGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDG 129
GVP N N Q GY+RR R + G G K + WYFYY GTGP A L +G ++DG
Sbjct 54 SGVPDNENLKLSQQHGYWRRQAR-YKPGKGGKKSVPDAWYFYYTGTGPAADLNWGDSQDG 112
Query 130 IIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSR 189
I+WV+ +GA + + GTR+P L+ S GG + R
Sbjct 113 IVWVSAKGADTKSRSNQGTRDPDKFDQYPLRF--------------SDGGPDGNFRWDFI 158
Query 190 SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKK 249
N R+ ++ + +R G D L +K+ + QQ++G +TK
Sbjct 159 PINRGRSGRSTAASSAASSRAPSRDGSRGRRSGAEDDLIARAAKII-QDQQKKGSRITKA 217
Query 250 SAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAP 309
A E + + KRT Y V Q FG R + +GNFGD ++ +G + P
Sbjct 218 KADEMAHRRYCKRTIPPGYKVDQVFGPRT-KGKEGNFGDDKMNEEGIKDGRVIAMLNLVP 276
Query 310 SASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPK 369
S+ A SR+ ++ P G L + + DP F + V + ++ +D T P +
Sbjct 277 SSHACLFGSRVTPKLQPDGLHLRFEFTTVVSRDDPQFDNYVKICDQCVDGVGTRPKDDEP 336
Query 370 KDKKKKADETQALPQRQ 386
+ K +
Sbjct 337 RPKSRPNSRPATRTSSP 353
>sp|Q98Y32|NCAP_IBVH5 Nucleoprotein OS=Avian infectious bronchitis
virus (strain H52) OX=231425 GN=N PE=2 SV=1
Length=409
Score = 381 bits (977), Expect = 5e-129, Method: Composition-based stats.
Identities = 97/370 (26%), Positives = 154/370 (42%), Gaps = 25/370 (7%)
Query 37 SKQRRPQGLPNNTASWFTALT--QHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRI 94
+ P+ + SWF A+ + KF G GVP N N P Q GY+RR R
Sbjct 20 GGPKPPKVGSSGNVSWFQAIKAKKLNSPPPKF-EGSGVPDNENLKPSQQHGYWRRQAR-F 77
Query 95 RGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANN 154
+ G G K + WYFYY GTGP A L +G ++DGI+WVA +GA + + GTR+
Sbjct 78 KPGKGGRKPVPDAWYFYYTGTGPAANLNWGDSQDGIVWVAGKGADTKFRSNQGTRDSDKF 137
Query 155 AAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNG 214
L+ S GG + R N R+ ++ + +R
Sbjct 138 DQYPLRF--------------SDGGPDGNFRWDFIPLNRGRSGRSTAASSAASSRAPSRE 183
Query 215 GDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAF 274
D L +++ + QQ++G +TK A E + + KRT Y V Q F
Sbjct 184 VSRGRRSGSEDDLIARAARII-QDQQKKGSRITKAKADEMAHRRYCKRTIPPNYKVDQVF 242
Query 275 GRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYT 334
G R + +GNFGD ++ +G + PS+ A SR+ + P G L +
Sbjct 243 GPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPRLQPDGLHLKFE 301
Query 335 GAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADE-----TQALPQRQKKQ 389
+ DP F + V + ++ +D T P + + K + + P++Q+ +
Sbjct 302 FTTVVPRDDPQFDNYVKICDQCVDGVGTRPKDDEPRPKSRSSSRPATRGNSPAPRQQRPK 361
Query 390 QTVTLLPAAD 399
+ D
Sbjct 362 KEKKPKKQDD 371
>sp|Q96598|NCAP_IBVVI Nucleoprotein OS=Avian infectious bronchitis
virus (strain Vic S) OX=231428 GN=N PE=2 SV=1
Length=409
Score = 379 bits (972), Expect = 4e-128, Method: Composition-based stats.
Identities = 101/370 (27%), Positives = 156/370 (42%), Gaps = 25/370 (7%)
Query 37 SKQRRPQGLPNNTASWFTALT--QHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRI 94
+ P+ + ASWF A+ + KF G GVP N N P Q GY+RR R
Sbjct 20 GGPKPPKIGSSGNASWFQAIKAKKLNVPQPKF-EGSGVPDNNNIKPSQQHGYWRRQAR-Y 77
Query 95 RGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANN 154
+ G K + WYFYY GTGP A L +G N+DGI+WVA +GA + + GTR+P
Sbjct 78 KPGKSGRKPVPDAWYFYYTGTGPAADLNWGENQDGIVWVAAKGADTKSRSNQGTRDPDKF 137
Query 155 AAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNG 214
L+ S GG + R N R+ ++ + +R
Sbjct 138 DQYPLRF--------------SDGGPDGNFRWDFIPLNRGRSGRSTAASSAASSRAPSRE 183
Query 215 GDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAF 274
G D L +K+ + QQ++G +TK A E + + KRT Y V Q F
Sbjct 184 GSRGRRSGAEDDLIARAAKII-QDQQKRGSRITKAKADEMAHRRYCKRTIPPGYRVDQVF 242
Query 275 GRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYT 334
G R + +GNFGD ++ +G PS+ A SR+ ++ P G L +
Sbjct 243 GPRT-KGKEGNFGDDKMNEEGIKDGRVTATLNLIPSSHACLFGSRVTPKLQPDGLHLKFE 301
Query 335 GAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADE-----TQALPQRQKKQ 389
+ DP F + V + ++ +D T P + + K + + P++Q+ +
Sbjct 302 FTTVVPRDDPQFDNYVKICDQCVDGVGTRPKDDEPRPKSRSSSRPATRGNSPAPRQQRPK 361
Query 390 QTVTLLPAAD 399
+ D
Sbjct 362 KEKKPKKQDD 371
>sp|Q9PZ51|NCAP_CVTIN Nucleoprotein OS=Turkey coronavirus (strain
Indiana) OX=231429 GN=N PE=3 SV=1
Length=409
Score = 377 bits (967), Expect = 2e-127, Method: Composition-based stats.
Identities = 103/395 (26%), Positives = 160/395 (41%), Gaps = 44/395 (11%)
Query 12 APRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALT--QHGKEDLKFPRG 69
AP I GGP + P+ + + SWF A+ + KF G
Sbjct 14 APVIKLGGP-------------------KPPKVGSSGSVSWFQAIKAKKLNSPQPKF-EG 53
Query 70 QGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDG 129
GVP N N Q GY+RR R + G K + WYFYY GTGP A L +G ++ G
Sbjct 54 SGVPDNENLKTSQQHGYWRRQAR-FKSSRGGRKPVPDAWYFYYTGTGPAADLQWGDSQAG 112
Query 130 IIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSR 189
I+WVA +GA K + GTR+P L+ S GG + R
Sbjct 113 IVWVAAKGADVKSKSNQGTRDPDKFDQYPLRF--------------SDGGPDGNFRWDFI 158
Query 190 SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKK 249
N R+ + + +R G D L +K+ + QQ++G +TK
Sbjct 159 PLNRGRSGRSTAVSSAASSRAPSREGSRGRRSGAEDDLIARAAKII-QDQQKKGSRITKA 217
Query 250 SAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAP 309
A E + + KRT Y V Q FG R + +GNFGD ++ +G + P
Sbjct 218 KAEEMAHRRYCKRTVPPGYKVEQVFGPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVP 276
Query 310 SASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPK 369
S+ A S++ ++ P G L + + DP F + V + ++ +D T P +
Sbjct 277 SSHACLFASKLTPKLQPDGLHLKFEFTTVVPRDDPQFDNYVSICDQCVDGVGTRPKDDEP 336
Query 370 KDKKKKADE-----TQALPQRQKKQQTVTLLPAAD 399
+ K + + P++Q+ ++ D
Sbjct 337 RPKSRASSRPATRGNSPAPRQQRLKKEKKPKKQDD 371
>sp|Q9DQX6|NCAP_CVEN9 Nucleoprotein OS=Equine coronavirus (isolate
NC99) OX=202496 GN=N PE=3 SV=1
Length=446
Score = 369 bits (946), Expect = 9e-124, Method: Composition-based stats.
Identities = 130/417 (31%), Positives = 201/417 (48%), Gaps = 47/417 (11%)
Query 21 SDSTGSNQNGERSGARSKQRRPQGLPN------NTASWFTALTQHGK-EDLKFPRGQGVP 73
+D + + N + G R++ ++ SWF+ +TQ K ++ +F GQGVP
Sbjct 27 ADQSDQSSNFQTRGRRAQPKQTATSQPAGGNVVPYYSWFSGITQFQKGKEFQFAEGQGVP 86
Query 74 INTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIW 132
I + GY+ R RR + DG + L PRWYFYYLGTGP A YG N DG+ W
Sbjct 87 IAPGIPATEAKGYWYRHNRRSFKTADGNQRQLLPRWYFYYLGTGPHAKAQYGTNIDGVFW 146
Query 133 VATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGG--SQASSRSSSRS 190
VA + A + R+P+++ AI + P GT LP+G+Y EGS + S+ +S
Sbjct 147 VANKQADVNTPADVVDRDPSSDEAIPTRFPPGTVLPQGYYIEGSGRSVPNSRSTSRASSR 206
Query 191 RNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKS 250
+S+ + +S +P + +A L+L +L + +K Q VTK++
Sbjct 207 ASSAGSRNRSNSGTRTPTSGVTSDMADQIASLVLAKLGKDATK---------PQQVTKQT 257
Query 251 AAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQ 306
A E + KPRQKR+ K V Q FG+RGP Q NFG E+++ GT +P +A+
Sbjct 258 AKEVRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFGGAEMLKLGTSDPQFPILAE 314
Query 307 FAPSASAFFGMSRIGM-----------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNK 355
AP+A AFF SR+ + E L Y GAI+ D P F+ + +LN+
Sbjct 315 LAPTAGAFFFGSRLELAKVQNLSGNFDEPQKDVYELRYNGAIRFDSTLPGFETIMKVLNE 374
Query 356 HIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFSKQLQQSMS 412
+++AY+ ++ PQRQ+ QQ + ++QQ+ S
Sbjct 375 NLNAYQ----------QQDDGTNMSPKPQRQRGQQKGGENEDVSVAAPKSRVQQNKS 421
>sp|P59712|NCAP_CVBQ Nucleoprotein OS=Bovine coronavirus (strain
Quebec) OX=11133 GN=N PE=3 SV=1
Length=448
Score = 363 bits (931), Expect = 2e-121, Method: Composition-based stats.
Identities = 132/442 (30%), Positives = 211/442 (48%), Gaps = 65/442 (15%)
Query 9 QRNAPRITFGGPS--------DSTGSNQNGERSGARSKQRRPQGLPNNT-------ASWF 53
++++ R +FG S D + ++N + G R++ ++ + SWF
Sbjct 7 KQSSSRASFGNRSGNGILKWADQSDQSRNVQTRGRRAQPKQTATSQLPSGGNVVPYYSWF 66
Query 54 TALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFY 111
+ +TQ K ++ +F GQGVPI + GY+ R RR + DG + L PRWYFY
Sbjct 67 SGITQFQKGKEFEFAEGQGVPIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRWYFY 126
Query 112 YLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGF 171
YLGTGP A YG + DG+ WVA+ A I R+P+++ AI + P GT LP+G+
Sbjct 127 YLGTGPHAKDQYGTDIDGVFWVASNQADVNTPADILDRDPSSDEAIPTRFPPGTVLPQGY 186
Query 172 YAEGSRGGSQA--SSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQ 229
Y EGS + S+ +S +S+ + + +S +P +A L+L +L +
Sbjct 187 YIEGSGRSAPNSRSTSRASSRASSAGSRSRANSGNRTPTSGVTPDMADQIASLVLAKLGK 246
Query 230 LESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGN 285
+K Q VTK++A E + KPRQKR+ K V Q FG+RGP Q N
Sbjct 247 DATK---------PQQVTKQTAKEIRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---N 294
Query 286 FGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM-----------EVTPSGTWLTYT 334
FG E+++ GT +P +A+ AP+A AFF SR+ + E L Y
Sbjct 295 FGGGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNLDEPQKDVYELRYN 354
Query 335 GAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQ---- 390
GAI+ D F+ + +LN++++AY+ ++ PQRQ+ Q+
Sbjct 355 GAIRFDSTLSGFETIMKVLNENLNAYQ----------QQDGMMNMSPKPQRQRGQKNGQG 404
Query 391 -----TVTLLPAADLDDFSKQL 407
+V + + S++L
Sbjct 405 ENDNISVAAPKSRVQQNKSREL 426
>sp|P10527|NCAP_CVBM Nucleoprotein OS=Bovine coronavirus (strain
Mebus) OX=11132 GN=N PE=1 SV=1
Length=448
Score = 363 bits (931), Expect = 2e-121, Method: Composition-based stats.
Identities = 132/442 (30%), Positives = 211/442 (48%), Gaps = 65/442 (15%)
Query 9 QRNAPRITFGGPS--------DSTGSNQNGERSGARSKQRRPQGLPNNT-------ASWF 53
++++ R +FG S D + ++N + G R++ ++ + SWF
Sbjct 7 KQSSSRASFGNRSGNGILKWADQSDQSRNVQTRGRRAQPKQTATSQLPSGGNVVPYYSWF 66
Query 54 TALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFY 111
+ +TQ K ++ +F GQGVPI + GY+ R RR + DG + L PRWYFY
Sbjct 67 SGITQFQKGKEFEFAEGQGVPIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRWYFY 126
Query 112 YLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGF 171
YLGTGP A YG + DG+ WVA+ A I R+P+++ AI + P GT LP+G+
Sbjct 127 YLGTGPHAKDQYGTDIDGVFWVASNQADVNTPADILDRDPSSDEAIPTRFPPGTVLPQGY 186
Query 172 YAEGSRGGSQA--SSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQ 229
Y EGS + S+ +S +S+ + + +S +P +A L+L +L +
Sbjct 187 YIEGSGRSAPNSRSTSRASSRASSAGSRSRANSGNRTPTSGVTPDMADQIASLVLAKLGK 246
Query 230 LESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGN 285
+K Q VTK++A E + KPRQKR+ K V Q FG+RGP Q N
Sbjct 247 DATK---------PQQVTKQTAKEIRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---N 294
Query 286 FGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM-----------EVTPSGTWLTYT 334
FG E+++ GT +P +A+ AP+A AFF SR+ + E L Y
Sbjct 295 FGGGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNLDEPQKDVYELRYN 354
Query 335 GAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQ---- 390
GAI+ D F+ + +LN++++AY+ ++ PQRQ+ Q+
Sbjct 355 GAIRFDSTLSGFETIMKVLNENLNAYQ----------QQDGMMNMSPKPQRQRGQKNGQG 404
Query 391 -----TVTLLPAADLDDFSKQL 407
+V + + S++L
Sbjct 405 ENDNISVAAPKSRVQQNKSREL 426
>sp|Q8JSP4|NCAP_CVPIA Nucleoprotein OS=Porcine hemagglutinating
encephalomyelitis virus (strain IAF-404) OX=230236 GN=N PE=3
SV=1
Length=449
Score = 362 bits (930), Expect = 2e-121, Method: Composition-based stats.
Identities = 132/423 (31%), Positives = 205/423 (48%), Gaps = 58/423 (14%)
Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNNT-------ASWFTALTQHGK-EDLKFPRGQGV 72
+D + ++N + G R + ++ + SWF+ +TQ K ++ +F GQGV
Sbjct 27 ADQSDQSRNVQTRGRRVQSKQTATSQQPSGGTVVPYYSWFSGITQFQKGKEFEFAEGQGV 86
Query 73 PINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGII 131
PI + GY+ R RR + DG + L PRWYFYYLGTGP A YG + DG+
Sbjct 87 PIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRWYFYYLGTGPHAKHQYGTDIDGVF 146
Query 132 WVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSR 191
WVA+ A I R+P+++ AI + P GT LP+G+Y EGS G S +SRS+SR+
Sbjct 147 WVASNQADINTPADIVDRDPSSDEAIPTRFPPGTVLPQGYYIEGS-GRSAPNSRSTSRAP 205
Query 192 NSSR---NSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTK 248
N + + + +S + +A L+L +L + +K Q VTK
Sbjct 206 NRAPSAGSRSRANSGNRTSTPGVTPDMADQIASLVLAKLGKDATK---------PQQVTK 256
Query 249 KSAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQI 304
++A E + KPRQKR+ K V Q FG+RGP Q NFG E+++ GT +P +
Sbjct 257 QTAKEVRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFGGGEMLKLGTSDPQFPIL 313
Query 305 AQFAPSASAFFGMSRIGM-----------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILL 353
A+ AP+A AFF SR+ + E L Y GAI+ D F+ + +L
Sbjct 314 AELAPTAGAFFFGSRLELAKVQNLSGNPDEPQKDVYELRYNGAIRFDSTLSGFETIMKVL 373
Query 354 NKHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQ---------TVTLLPAADLDDFS 404
N++++AY+ ++ PQRQ+ Q+ +V + + S
Sbjct 374 NQNLNAYQ---------HQEDGMMNISPKPQRQRGQKNGQVENDNISVAAPKSRVQQNKS 424
Query 405 KQL 407
++L
Sbjct 425 REL 427
>sp|A3EXD7|NCAP_BCHK5 Nucleoprotein OS=Bat coronavirus HKU5 OX=694008
GN=N PE=3 SV=1
Length=427
Score = 361 bits (925), Expect = 7e-121, Method: Composition-based stats.
Identities = 177/386 (46%), Positives = 230/386 (60%), Gaps = 17/386 (4%)
Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHGKEDLKFPRGQGVPINTNSSP 80
++ + N +RSG + RP PN T SWFT LTQHGK+ L FP GQGVP+N NS+P
Sbjct 13 ANDNETPTNSQRSGRPRTKPRP--APNTTVSWFTGLTQHGKQPLAFPPGQGVPLNANSTP 70
Query 81 DDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALN 140
GY+RR R+I G+G K L+PRWYFYY GTGPEA LP+ + KDGIIWV GA +
Sbjct 71 AQNAGYWRRQDRKINTGNG-TKPLAPRWYFYYTGTGPEANLPFRSVKDGIIWVHENGATD 129
Query 141 TPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPG 200
P GTRNPAN+ AIV Q GTTLPK F+ EG+ G SQ+SSR+SSRS + S +
Sbjct 130 AP-SVFGTRNPANDPAIVTQFAPGTTLPKNFHIEGTGGNSQSSSRASSRSSSRSSSRNGR 188
Query 201 SSRGTSPARMAGNGGDA----ALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASK 256
S+ + A A +G +LLD +L +GKG +Q + +TKK A A +
Sbjct 189 SNNSSRNASPAPHGVGDVVGAGTLSVLLDLQKRLADLEAGKGN-KQPKVITKKDAQAAKQ 247
Query 257 KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFG 316
K R KR ATK YNV QAFG RGP Q NFGD + + GT+ WPQIA+ APSASAF
Sbjct 248 KMRHKRVATKGYNVVQAFGMRGPGPLQSNFGDMQYNKLGTEDPRWPQIAELAPSASAFMS 307
Query 317 MSRIGMEVTPSG------TWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKK 370
S+ + + +L+Y+GAIKLD K+PN+ + +L+ +IDAYK+FP E K
Sbjct 308 TSQFKVTHQSNDENGEPVYFLSYSGAIKLDPKNPNYNKWMEILDANIDAYKSFPKKERK- 366
Query 371 DKKKKADETQALPQRQKKQQTVTLLP 396
+K D+ P + + L P
Sbjct 367 -QKPSGDDAATAPATSQMEDVPELPP 391
>sp|Q8BB23|NCAP_CVP67 Nucleoprotein OS=Porcine hemagglutinating
encephalomyelitis virus (strain 67N) OX=230237 GN=N PE=3 SV=1
Length=449
Score = 361 bits (925), Expect = 2e-120, Method: Composition-based stats.
Identities = 132/423 (31%), Positives = 205/423 (48%), Gaps = 58/423 (14%)
Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNNT-------ASWFTALTQHGK-EDLKFPRGQGV 72
+D + ++N + G R + ++ + SWF+ +TQ K ++ +F GQGV
Sbjct 27 ADQSDQSRNVQTRGRRVQSKQTATSQQPSGGTVVPYYSWFSGITQFQKGKEFEFAEGQGV 86
Query 73 PINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGII 131
PI + GY+ R RR + DG + L PRWYFYYLGTGP A YG + DG+
Sbjct 87 PIAPGVPSTEAKGYWYRHNRRSFKTADGNQRQLLPRWYFYYLGTGPHAKDQYGTDIDGVF 146
Query 132 WVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSR 191
WVA+ A I R+P+++ AI + P GT LP+G+Y EGS G S +SRS+SR+
Sbjct 147 WVASNQADINTPADIVDRDPSSDEAIPTRFPPGTVLPQGYYIEGS-GRSAPNSRSTSRAP 205
Query 192 NSSR---NSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTK 248
N + + + +S + +A L+L +L + +K Q VTK
Sbjct 206 NRAPSAGSRSRANSGNRTSTPGVTPDMADQIASLVLAKLGKDATK---------PQQVTK 256
Query 249 KSAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQI 304
++A E + KPRQKR+ K V Q FG+RGP Q NFG E+++ GT +P +
Sbjct 257 QTAKEVRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFGGGEMLKLGTSDPQFPIL 313
Query 305 AQFAPSASAFFGMSRIGM-----------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILL 353
A+ AP+A AFF SR+ + E L Y GAI+ D F+ + +L
Sbjct 314 AELAPTAGAFFFGSRLELAKVQNLSGNPDEPQKDVYELRYNGAIRFDSTLSGFETIMKVL 373
Query 354 NKHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQ---------TVTLLPAADLDDFS 404
N++++AY+ ++ PQRQ+ Q+ +V + + S
Sbjct 374 NQNLNAYQ---------HQEDGMMNISPKPQRQRGQKNGQVENDNVSVAAPKSRVQQNKS 424
Query 405 KQL 407
++L
Sbjct 425 REL 427
>sp|Q9QAR1|NCAP_CVBLS Nucleoprotein OS=Bovine coronavirus (strain
LSU-94LSS-051) OX=233261 GN=N PE=3 SV=1
Length=448
Score = 360 bits (924), Expect = 2e-120, Method: Composition-based stats.
Identities = 129/422 (31%), Positives = 204/422 (48%), Gaps = 57/422 (14%)
Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNNTA-------SWFTALTQHGK-EDLKFPRGQGV 72
+D + ++N + G R++ ++ +A SWF+ +TQ K ++ +F GQGV
Sbjct 27 ADQSDQSRNVQTRGRRAQPKQTATSQQPSAGNVVPYYSWFSGITQFQKGKEFEFAEGQGV 86
Query 73 PINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGII 131
PI + GY+ R RR + DG + L PRWYFYYLGTGP A YG + DG+
Sbjct 87 PIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRWYFYYLGTGPHAKDQYGTDIDGVF 146
Query 132 WVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQA--SSRSSSR 189
WVA+ A I R+P+++ AI + P GT LP+G+Y EGS + S+ +S
Sbjct 147 WVASNQADVNTPADILDRDPSSDEAIPTRFPPGTVLPQGYYIEGSGRSAPNSRSTSRTSS 206
Query 190 SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKK 249
+S+ + + +S +P +A L+L +L + +K Q VTK+
Sbjct 207 RASSAGSRSRANSGNRTPTSGVTPDMADQIASLVLAKLGKDATK---------PQQVTKQ 257
Query 250 SAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIA 305
+A E + KPRQKR+ K V Q FG+RGP Q NFG E+++ GT +P +A
Sbjct 258 TAKEIRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFGGGEMLKLGTSDPQFPILA 314
Query 306 QFAPSASAFFGMSRIGM-----------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLN 354
+ AP+A AFF SR+ + E L Y GAI+ D F+ + +LN
Sbjct 315 ELAPTAGAFFFGSRLELAKVQNLSGNLDEPQKDVYELRYNGAIRFDSTLSGFETIMKVLN 374
Query 355 KHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQ---------TVTLLPAADLDDFSK 405
++++AY+ ++ PQRQ+ Q+ +V + + S+
Sbjct 375 ENLNAYQ----------QQDGMMNMSPKPQRQRGQKNGQGENDNISVAAPKSRVQQNKSR 424
Query 406 QL 407
+L
Sbjct 425 EL 426
>sp|Q91A22|NCAP_CVBEN Nucleoprotein OS=Bovine coronavirus (strain
98TXSF-110-ENT) OX=233262 GN=N PE=3 SV=1
Length=448
Score = 360 bits (923), Expect = 3e-120, Method: Composition-based stats.
Identities = 125/396 (32%), Positives = 195/396 (49%), Gaps = 48/396 (12%)
Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNNT-------ASWFTALTQHGK-EDLKFPRGQGV 72
+D + ++N + G R++ ++ + SWF+ +TQ K ++ +F GQGV
Sbjct 27 ADQSDQSRNVQTRGRRAQPKQTATSQQPSGGNVVPYYSWFSGITQFQKGKEFEFAEGQGV 86
Query 73 PINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGII 131
PI + GY+ R RR + DG + L PRWYFYYLGTGP A YG + DG+
Sbjct 87 PIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRWYFYYLGTGPHAKDQYGTDIDGVY 146
Query 132 WVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQA--SSRSSSR 189
WVA+ A I R+P+++ AI + P GT LP+G+Y EGS + S+ +S
Sbjct 147 WVASNQADVNTPADILDRDPSSDEAIPTRFPPGTVLPQGYYIEGSGRSAPNSRSTSRASS 206
Query 190 SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKK 249
+S+ + + +S +P +A L+L +L + +K Q VTK+
Sbjct 207 RASSAGSRSRANSGNRTPTSGVTPDMADQIASLVLAKLGKDAAK---------PQQVTKQ 257
Query 250 SAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIA 305
+A E + KPRQKR+ K V Q FG+RGP Q NFG E+++ GT +P +A
Sbjct 258 TAKEIRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFGGGEMLKLGTSDPQFPILA 314
Query 306 QFAPSASAFFGMSRIGM-----------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLN 354
+ AP+A AFF SR+ + E L Y GAI+ D F+ + +LN
Sbjct 315 ELAPTAGAFFFGSRLELAKVQNLSGNLDEPQKDVYELRYNGAIRFDSTLSGFETIMKVLN 374
Query 355 KHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQ 390
++++AY+ ++ PQRQ+ Q+
Sbjct 375 ENLNAYQ----------QQDGTMNMSPKPQRQRGQK 400
>sp|P26020|NCAP_CVBOK Nucleoprotein OS=Bovine coronavirus (strain
OK-0514) OX=231432 GN=N PE=3 SV=1
Length=448
Score = 360 bits (923), Expect = 3e-120, Method: Composition-based stats.
Identities = 128/422 (30%), Positives = 203/422 (48%), Gaps = 57/422 (14%)
Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNNT-------ASWFTALTQHGK-EDLKFPRGQGV 72
+D + ++N + G R++ ++ + SWF+ +TQ K ++ +F GQGV
Sbjct 27 ADQSDQSRNVQTRGRRAQPKQTATSQQPSGGNVVPYYSWFSGITQFQKGKEFEFAEGQGV 86
Query 73 PINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGII 131
PI + GY+ R RR + DG + L PRWYFYYLGTGP A YG + DG+
Sbjct 87 PIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRWYFYYLGTGPHAKDQYGTDIDGVF 146
Query 132 WVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQA--SSRSSSR 189
WVA+ A I R+P+++ AI + P GT LP+G+Y EGS + S+ +S
Sbjct 147 WVASNQADVNTPADILDRDPSSDEAIPTRFPPGTVLPQGYYIEGSGRSAPNSRSTSRASS 206
Query 190 SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKK 249
+S+ + + +S +P +A L+L +L + +K Q VTK+
Sbjct 207 RASSAGSRSRANSGNRTPTSGVTPDMADQIASLVLAKLGKDATK---------PQQVTKQ 257
Query 250 SAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIA 305
+A E + KPRQKR+ K V Q FG+RGP Q NFG E+++ GT +P +A
Sbjct 258 TAKEIRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFGGGEMLKLGTSDPQFPILA 314
Query 306 QFAPSASAFFGMSRIGM-----------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLN 354
+ AP+A AFF SR+ + E L Y GAI+ D F+ + +LN
Sbjct 315 ELAPTAGAFFFGSRLELAKVQNLSGNLDEPQKDVYELRYNGAIRFDSTLSGFETIMKVLN 374
Query 355 KHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQ---------TVTLLPAADLDDFSK 405
++++AY+ ++ PQRQ+ Q+ +V + + S+
Sbjct 375 ENLNAYQ----------QQDGMMNMSPKPQRQRGQKNGQGENDNISVAAPKSRVQQNKSR 424
Query 406 QL 407
+L
Sbjct 425 EL 426
>sp|Q8V432|NCAP_CVBLU Nucleoprotein OS=Bovine coronavirus (strain
98TXSF-110-LUN) OX=233264 GN=N PE=3 SV=1
Length=448
Score = 359 bits (921), Expect = 5e-120, Method: Composition-based stats.
Identities = 125/396 (32%), Positives = 195/396 (49%), Gaps = 48/396 (12%)
Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNNT-------ASWFTALTQHGK-EDLKFPRGQGV 72
+D + ++N + G R++ ++ + SWF+ +TQ K ++ +F GQGV
Sbjct 27 ADQSDQSRNVQTRGRRAQSKQTATSQQPSGGNVVPYYSWFSGITQFQKGKEFEFAEGQGV 86
Query 73 PINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGII 131
PI + GY+ R RR + DG + L PRWYFYYLGTGP A YG + DG+
Sbjct 87 PIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRWYFYYLGTGPHAKDQYGTDIDGVY 146
Query 132 WVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQA--SSRSSSR 189
WVA+ A I R+P+++ AI + P GT LP+G+Y EGS + S+ +S
Sbjct 147 WVASNQADVNTPADILDRDPSSDEAIPTRFPPGTVLPQGYYIEGSGRSAPNSRSTSRASS 206
Query 190 SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKK 249
+S+ + + +S +P +A L+L +L + +K Q VTK+
Sbjct 207 RASSAGSRSRANSGNRTPTSGVTPDMADQIASLVLAKLGKDAAK---------PQQVTKQ 257
Query 250 SAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIA 305
+A E + KPRQKR+ K V Q FG+RGP Q NFG E+++ GT +P +A
Sbjct 258 TAKEIRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFGGGEMLKLGTSDPQFPILA 314
Query 306 QFAPSASAFFGMSRIGM-----------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLN 354
+ AP+A AFF SR+ + E L Y GAI+ D F+ + +LN
Sbjct 315 ELAPTAGAFFFGSRLELAKVQNLSGNLDEPQKDVYELRYNGAIRFDSTLSGFETIMKVLN 374
Query 355 KHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQ 390
++++AY+ ++ PQRQ+ Q+
Sbjct 375 ENLNAYQ----------QQDGTMNMSPKPQRQRGQK 400
>sp|Q9QAR8|NCAP_CVBLY Nucleoprotein OS=Bovine coronavirus (strain
LY-138) OX=11131 GN=N PE=3 SV=1
Length=448
Score = 359 bits (920), Expect = 7e-120, Method: Composition-based stats.
Identities = 129/422 (31%), Positives = 200/422 (47%), Gaps = 57/422 (14%)
Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNNT-------ASWFTALTQHGK-EDLKFPRGQGV 72
+D + ++N + G R++ ++ + SWF+ +TQ K ++ +F GQGV
Sbjct 27 ADQSDQSRNVQTRGRRAQPKQTATSQQPSGGNVVPYYSWFSGITQFQKGKEFEFAEGQGV 86
Query 73 PINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGII 131
PI + GY+ R RR + DG + L PRWYFYYLGTGP A YG + DG+
Sbjct 87 PIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRWYFYYLGTGPHAKDQYGTDIDGVF 146
Query 132 WVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSR 191
WVA+ A I R+P+++ AI + P GT LP+G+Y EGS + S +S S
Sbjct 147 WVASNQADVNTPADILDRDPSSDEAIPTRFPPGTVLPQGYYIEGSGRSAPNSRSTSRASS 206
Query 192 NSSRNSTPGS--SRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKK 249
+S + S +P +A L+L +L + +K Q VTK+
Sbjct 207 RASSAGSRSRADSGNRTPTSGVTPDMADQIASLVLAKLGKDATK---------PQQVTKQ 257
Query 250 SAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIA 305
+A E + KPRQKR+ K V Q FG+RGP Q NFG E+++ GT +P +A
Sbjct 258 TAKEIRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFGGGEMLKLGTSDPQFPILA 314
Query 306 QFAPSASAFFGMSRIGM-----------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLN 354
+ AP+A AFF SR+ + E L Y GAI+ D F+ + +LN
Sbjct 315 ELAPTAGAFFFGSRLELAKVQNLSGNLDEPQKDVYELRYNGAIRFDSTLSGFETIMKVLN 374
Query 355 KHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQ---------TVTLLPAADLDDFSK 405
++++AY+ ++ PQRQ+ Q+ +V + + S+
Sbjct 375 ENLNAYQ----------QQDGMMNMSPKPQRQRGQKNGQGENDNISVAAPKSRVQQNKSR 424
Query 406 QL 407
+L
Sbjct 425 EL 426
>sp|P19902|NCAP_CVBF Nucleoprotein OS=Bovine coronavirus (strain
F15) OX=11129 GN=N PE=3 SV=1
Length=448
Score = 358 bits (919), Expect = 1e-119, Method: Composition-based stats.
Identities = 127/422 (30%), Positives = 202/422 (48%), Gaps = 57/422 (14%)
Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNNT-------ASWFTALTQHGK-EDLKFPRGQGV 72
+D + ++N + G R++ ++ + SWF+ +TQ K ++ +F GQGV
Sbjct 27 ADQSDQSRNVQTRGRRAQPKQTATSQQPSGGNVVPYYSWFSGITQFQKGKEFEFAEGQGV 86
Query 73 PINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGII 131
PI + GY+ R RR + DG + L PRWYFYYLGTGP A YG + DG+
Sbjct 87 PIAPGVPATEAKGYWYRHNRRSFKTRDGNQRQLLPRWYFYYLGTGPHAKDQYGTDIDGVF 146
Query 132 WVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQA--SSRSSSR 189
WVA+ A I R+P+++ AI + P GT LP+G+Y EGS + S+ +S
Sbjct 147 WVASNQADVNTPADILDRDPSSDEAIPTRFPPGTVLPQGYYIEGSGRSAPNSRSTSRASS 206
Query 190 SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKK 249
+S+ + + +S +P + L+L +L + +K Q VTK+
Sbjct 207 RASSAGSRSRANSGNRTPTSGVTPDMADQIVSLVLAKLGKDATK---------PQQVTKQ 257
Query 250 SAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIA 305
+A E + KPRQKR+ K V Q FG+RGP Q NFG E+++ GT +P +A
Sbjct 258 TAKEIRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFGGGEMLKLGTSDPQFPILA 314
Query 306 QFAPSASAFFGMSRIGM-----------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLN 354
+ AP+A AFF SR+ + E L Y GAI+ D F+ + +LN
Sbjct 315 ELAPTAGAFFFGSRLELAKVQNLSGNLDEPQKDVYELRYNGAIRFDSTLSGFETIMKVLN 374
Query 355 KHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQ---------TVTLLPAADLDDFSK 405
++++AY+ ++ PQRQ+ Q+ +V + + S+
Sbjct 375 ENLNAYQ----------QQDGMMNMSPKPQRQRGQKNGQGENDNISVAAPKSRVQQNKSR 424
Query 406 QL 407
+L
Sbjct 425 EL 426
>sp|Q96605|NCAP_IBVV1 Nucleoprotein OS=Avian infectious bronchitis
virus (strain V18/91) OX=231427 GN=N PE=2 SV=1
Length=409
Score = 355 bits (911), Expect = 5e-119, Method: Composition-based stats.
Identities = 93/383 (24%), Positives = 169/383 (44%), Gaps = 28/383 (7%)
Query 11 NAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHGKEDLKFP--- 67
+A ++ F P+ ++N + P+ ASWF +L + K+ P
Sbjct 2 SAGKLKFDSPAPILKLSKNTGST-------PPKVGGTGQASWFQSLKE--KKRTGTPPTF 52
Query 68 RGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANK 127
G GVP N+N P Q GY++R R + G G K ++ WYFYY GTGP L +G +
Sbjct 53 EGSGVPDNSNVKPQFQHGYWKRQ-HRYKPGKGGRKPVADAWYFYYTGTGPFGDLKWGDSN 111
Query 128 DGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSS 187
D ++WV +GA + + G R+P L+ +G + + ++ + S+
Sbjct 112 DDVVWVKAKGADTSKIGNYGVRDPDKFDQAPLRFTEGGPDNNYRWDFIALNRGRSRNSSA 171
Query 188 SRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVT 247
SR +SR + SSRG +R+ + D A +++ QQ+ G ++
Sbjct 172 VTSRENSRPGSRDSSRGRQRSRVDDDLIDRAAKIIMQ--------------QQKNGSRIS 217
Query 248 KKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQF 307
K+ A E +++ KR + + FG+R Q NFGD ++I +G +
Sbjct 218 KQKANEMAERKYHKRAIAPGKRIDEVFGQRRKGQAP-NFGDDKMIEEGVKDGRLTAMLNL 276
Query 308 APSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTE 367
P+ A S + ++ P G + ++ + +DP F + + ++ +D T P +
Sbjct 277 VPTPHACLLGSMVTAKLQPDGLHVRFSFETVVKREDPQFANYSKICDECVDGVGTRPKDD 336
Query 368 PKKDKKKKADETQALPQRQKKQQ 390
P + + + + P K+Q+
Sbjct 337 PTPRSRAASKDRNSAPATPKQQR 359
>sp|A3EXH0|NCAP_BCHK9 Nucleoprotein OS=Bat coronavirus HKU9 OX=694006
GN=N PE=3 SV=1
Length=468
Score = 354 bits (908), Expect = 1e-117, Method: Composition-based stats.
Identities = 152/366 (42%), Positives = 203/366 (55%), Gaps = 17/366 (5%)
Query 12 APRITFGGPSDSTGSN---QNGERSGARSKQ----------RRPQGLPNNTASWFTALTQ 58
+P++TF SD + S +NG R+GAR K +P+ P SWF L Q
Sbjct 13 SPKVTFKQESDGSDSESERRNGNRNGARPKNNNSRGSAPKPEKPKAAPPQNVSWFAPLVQ 72
Query 59 HGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPE 118
GK +L+FPRG+GVP++ + GY+ R R + G GK +PRWYFYY GTG
Sbjct 73 TGKAELRFPRGEGVPVSQGVDSTYEHGYWLRTQRSFQKG-GKQVLANPRWYFYYTGTGRF 131
Query 119 AGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRG 178
L +G I+WV EGA +GTRNP+N+ AI +QL G +PKGFYAEG
Sbjct 132 GDLRFGTKNPDIVWVGQEGANINRLGDMGTRNPSNDGAIPVQLAGG--IPKGFYAEGRGS 189
Query 179 GSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSG-K 237
+ S S + SR SSR ++ SSRG SP R A N L+ +L +LES++SG K
Sbjct 190 RGNSRSSSRNSSRASSRGNSRASSRGASPGRPAANPSTEPWMAYLVQKLERLESQVSGTK 249
Query 238 GQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTD 297
+ VTK AA +KK R KRTA K VT +GRRGP +GNFGD+E+I+ GTD
Sbjct 250 PATKNPVQVTKNEAAANAKKLRHKRTAHKGSGVTVNYGRRGPGDLEGNFGDREMIKLGTD 309
Query 298 YKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHI 357
+ AQ AP+ S+F MS + WL Y GAIKL DPN++ +L +++
Sbjct 310 DPRFAAAAQMAPNVSSFLFMSHLSTRDEDDALWLHYKGAIKLPKDDPNYEQWTKILAENL 369
Query 358 DAYKTF 363
+AYK F
Sbjct 370 NAYKDF 375
>sp|P33469|NCAP_CVHOC Nucleoprotein OS=Human coronavirus OC43
OX=31631 GN=N PE=1 SV=1
Length=448
Score = 351 bits (901), Expect = 5e-117, Method: Composition-based stats.
Identities = 125/422 (30%), Positives = 199/422 (47%), Gaps = 57/422 (14%)
Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNNT-------ASWFTALTQHGK-EDLKFPRGQGV 72
+D + +N + G R++ ++ + SWF+ +TQ K ++ +F GQG
Sbjct 27 ADQSDQVRNVQTRGRRAQPKQTATSQQPSGGNVVPYYSWFSGITQFQKGKEFEFVEGQGP 86
Query 73 PINTNSSPDDQIGYYRRATR-RIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGII 131
PI + GY+ R R + DG + L PRWYFYYLGTGP A YG + DG+
Sbjct 87 PIAPGVPATEAKGYWYRHNRGSFKTADGNQRQLLPRWYFYYLGTGPHAKDQYGTDIDGVY 146
Query 132 WVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQA--SSRSSSR 189
WVA+ A I R+P+++ AI + P GT LP+G+Y EGS + S+ +S
Sbjct 147 WVASNQADVNTPADIVDRDPSSDEAIPTRFPPGTVLPQGYYIEGSGRSAPNSRSTSRTSS 206
Query 190 SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKK 249
+S+ + + +S +P +A L+L +L + +K Q VTK
Sbjct 207 RASSAGSRSRANSGNRTPTSGVTPDMADQIASLVLAKLGKDATK---------PQQVTKH 257
Query 250 SAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIA 305
+A E + KPRQKR+ K V Q FG+RGP Q NFG E+++ GT +P +A
Sbjct 258 TAKEVRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFGGGEMLKLGTSDPQFPILA 314
Query 306 QFAPSASAFFGMSRIGM-----------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLN 354
+ AP+A AFF SR+ + E L Y GAI+ D F+ + +LN
Sbjct 315 ELAPTAGAFFFGSRLELAKVQNLSGNPDEPQKDVYELRYNGAIRFDSTLSGFETIMKVLN 374
Query 355 KHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQ---------TVTLLPAADLDDFSK 405
++++AY+ ++ PQRQ+ + +V + + + S+
Sbjct 375 ENLNAYQ----------QQDGMMNMSPKPQRQRGHKNGQGENDNISVAVPKSRVQQNKSR 424
Query 406 QL 407
+L
Sbjct 425 EL 426
>sp|K9N4V7|NCAP_MERS1 Nucleoprotein OS=Middle East respiratory
syndrome-related coronavirus (isolate United Kingdom/H123990006/2012)
OX=1263720 GN=N PE=1 SV=1
Length=411
Score = 344 bits (881), Expect = 2e-114, Method: Composition-based stats.
Identities = 196/411 (48%), Positives = 258/411 (63%), Gaps = 28/411 (7%)
Query 11 NAPR-ITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHGKEDLKFPRG 69
APR ++F +D T +N S R + +P+ PNNT SW+T LTQHGK L FP G
Sbjct 5 AAPRAVSFADNNDITNTN----LSRGRGRNPKPRAAPNNTVSWYTGLTQHGKVPLTFPPG 60
Query 70 QGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDG 129
QGVP+N NS+P GY+RR R+I G+G +K L+PRWYFYY GTGPEA LP+ A KDG
Sbjct 61 QGVPLNANSTPAQNAGYWRRQDRKINTGNG-IKQLAPRWYFYYTGTGPEAALPFRAVKDG 119
Query 130 IIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSR 189
I+WV +GA + P GTRNP N++AIV Q GT LPK F+ EG+ G SQ+SSR+SS
Sbjct 120 IVWVHEDGATDAPST-FGTRNPNNDSAIVTQFAPGTKLPKNFHIEGTGGNSQSSSRASSV 178
Query 190 SRNSSRNSTPGS-----SRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQ 244
SRNSSR+S+ GS +RGTSP G LL LD LN+L++ SGK +Q Q +
Sbjct 179 SRNSSRSSSQGSRSGNSTRGTSPG--PSGIGAVGGDLLYLDLLNRLQALESGKVKQSQPK 236
Query 245 TVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQI 304
+TKK AA A K R KRT+TK++N+ QAFG RGP QGNFGD +L + GT+ WPQI
Sbjct 237 VITKKDAAAAKNKMRHKRTSTKSFNMVQAFGLRGPGDLQGNFGDLQLNKLGTEDPRWPQI 296
Query 305 AQFAPSASAFFGMSRIGMEVTPSG------TWLTYTGAIKLDDKDPNFKDQVILLNKHID 358
A+ AP+ASAF GMS+ + + +L Y+GAIKLD K+PN+ + LL ++ID
Sbjct 297 AELAPTASAFMGMSQFKLTHQNNDDHGNPVYFLRYSGAIKLDPKNPNYNKWLELLEQNID 356
Query 359 AYKTFPPTEPKKDKKKK--ADETQALPQ------RQKKQQTVTLLPAADLD 401
AYKTFP E K+ K+ D+ P+ Q+ + ++ P +D
Sbjct 357 AYKTFPKKEKKQKAPKEESTDQMSEPPKEHRVQGTQRTRTRPSVQPGPMID 407
>sp|A3EXA1|NCAP_BCHK4 Nucleoprotein OS=Bat coronavirus HKU4 OX=694007
GN=N PE=3 SV=1
Length=423
Score = 340 bits (872), Expect = 7e-113, Method: Composition-based stats.
Identities = 181/379 (48%), Positives = 232/379 (61%), Gaps = 24/379 (6%)
Query 34 GARSKQRRPQGLPNNTASWFTALTQHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRR 93
R + +P+ PNNT SW+T LTQHGK L FP GQGVP+N NS+ GY+RR R+
Sbjct 25 RGRGRNPKPRPAPNNTVSWYTGLTQHGKNPLAFPPGQGVPLNANSTTAQNAGYWRRQDRK 84
Query 94 IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPAN 153
I G+G +K L+PRW+FYY GTGPEA LP+ + KDGI+WV EGA + P GTRNPAN
Sbjct 85 INTGNG-VKQLAPRWFFYYTGTGPEANLPFRSVKDGIVWVYEEGATDAP-SVFGTRNPAN 142
Query 154 NAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPG-----SSRGTSPA 208
+AAIV Q GT +PK F+ EG+ G SQ+SSR+SS SRNSSR+S+ G +SRGTSP
Sbjct 143 DAAIVCQFAPGTLIPKNFHIEGTGGNSQSSSRASSNSRNSSRSSSRGGRSTSNSRGTSPV 202
Query 209 RMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAY 268
++ AL LL L + + G+ +Q + VTKK AA A K R KR ATK +
Sbjct 203 SHGVGSAESLAALPLLLDLQKRLA-DLESGKSKQPKVVTKKDAAAAKNKMRHKRVATKGF 261
Query 269 NVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSG 328
NVTQAFG RGP QGNFGD + GT+ WPQ+A+ APSASAF MS+ + +
Sbjct 262 NVTQAFGLRGPGPLQGNFGDMNYNKFGTEDPRWPQMAELAPSASAFMSMSQFKLTHQSND 321
Query 329 ------TWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQA- 381
+L+Y+GAIKLD K+PN+K + LL +IDAYKTFP E K + +
Sbjct 322 DKGDPIYFLSYSGAIKLDPKNPNYKKWLELLESNIDAYKTFPKKERKPKTTEDGAVASSS 381
Query 382 ---------LPQRQKKQQT 391
PQR+ K +
Sbjct 382 ASQMEDVDAKPQRKPKSRV 400
>sp|Q0Q4E6|NCAP_BC133 Nucleoprotein OS=Bat coronavirus 133/2005
OX=389230 GN=N PE=3 SV=1
Length=424
Score = 340 bits (871), Expect = 8e-113, Method: Composition-based stats.
Identities = 176/367 (48%), Positives = 227/367 (62%), Gaps = 14/367 (4%)
Query 34 GARSKQRRPQGLPNNTASWFTALTQHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRR 93
R + +P+ PNNT SW+T LTQHGK L FP GQGVP+N NS+ GY+RR R+
Sbjct 25 RGRGRNPKPRPAPNNTVSWYTGLTQHGKNPLAFPPGQGVPLNANSTTAQNAGYWRRQDRK 84
Query 94 IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPAN 153
I G+G +K L+PRW+FYY GTGPEA LP+ + KDGI+WV EGA + P GTRNPAN
Sbjct 85 INTGNG-VKQLAPRWFFYYTGTGPEANLPFRSVKDGIVWVYEEGATDAP-SVFGTRNPAN 142
Query 154 NAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTP-----GSSRGTSPA 208
+AAIV Q GT +PK F+ EG+ G SQ+SSR+SS SRNSSR+++ +SRGTSP
Sbjct 143 DAAIVCQFAPGTLIPKNFHIEGTGGNSQSSSRASSNSRNSSRSNSRGGRSTSNSRGTSPV 202
Query 209 RMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAY 268
++ AL LL L + + G+ +Q + VTKK AA A K R KR ATK +
Sbjct 203 SHGVGSAESLAALPLLLDLQKRLA-DLESGKSKQPKVVTKKDAAAAKNKMRHKRVATKGF 261
Query 269 NVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSG 328
NVTQAFG RGP QGNFGD + GT+ WPQ+A+ APSASAF MS+ + +
Sbjct 262 NVTQAFGLRGPGPLQGNFGDMNYNKFGTEDPRWPQMAELAPSASAFMSMSQFKLTHQSND 321
Query 329 ------TWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQAL 382
+L+Y+GAIKLD K+PN+K + LL +IDAYKTFP E K + +
Sbjct 322 DKGDPIYFLSYSGAIKLDPKNPNYKKWLELLEANIDAYKTFPKKERKPKTTEDGAVVASS 381
Query 383 PQRQKKQ 389
Q +
Sbjct 382 SASQMED 388
>sp|Q7T6S8|NCAP_CVCBG Nucleoprotein OS=Canine coronavirus (strain
BGF10) OX=441619 GN=N PE=3 SV=1
Length=382
Score = 302 bits (774), Expect = 8e-99, Method: Composition-based stats.
Identities = 99/361 (27%), Positives = 172/361 (48%), Gaps = 35/361 (10%)
Query 51 SWFTALT-QHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWY 109
S+F +T + G + VP+ + D QIGY+ R R R G+ KDL RW+
Sbjct 34 SFFNPVTLKQGSKFWDLCPRDFVPLKIGNK-DQQIGYWNRQIR-YRMVKGQRKDLPERWF 91
Query 110 FYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPK 169
FYYLGTGP A + DG++WVA EGA+ P +GTR NN + L+ +P
Sbjct 92 FYYLGTGPHADAKFKQKLDGVVWVAKEGAMTKPTT-LGTRG-TNNESKALKF--DVKVPS 147
Query 170 GFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQ 229
F E ++ + SRS SRS++ +R + G + + N D ++ +L L +
Sbjct 148 EFQLEVNQSRDNSRSRSQSRSQSRTRAQSRG-------RQQSNNKKDDSVEQAVLAALKK 200
Query 230 L------ESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQ 283
L + + + +++ + T+ + + K KRTA K +VT+ +G R +
Sbjct 201 LGVDTEKQQQRARSKSKERSNSKTRDTTPKNENKHTWKRTAGKG-DVTKFYGARS---SS 256
Query 284 GNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKD 343
NFGD +L+ G KH+PQ+A+ PS S+ S + +T+T L D
Sbjct 257 ANFGDSDLVANGNSAKHYPQLAECVPSVSSILFGSHWTAKEDGDQIEVTFTHKYHLPKDD 316
Query 344 PNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDF 403
P + I+AY P+E K+++ + +++ + +++ ++P A +++
Sbjct 317 PK----TGQFLQQINAYAR--PSEVAKEQRLRKARSKSAERVEQE-----VVPDALTENY 365
Query 404 S 404
+
Sbjct 366 T 366
>sp|P05991|NCAP_CVPFS Nucleoprotein OS=Porcine transmissible gastroenteritis
coronavirus (strain FS772/70) OX=11150 GN=N PE=1
SV=1
Length=382
Score = 300 bits (768), Expect = 8e-98, Method: Composition-based stats.
Identities = 100/390 (26%), Positives = 176/390 (45%), Gaps = 42/390 (11%)
Query 22 DSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALT-QHGKEDLKFPRGQGVPINTNSSP 80
D + + S R P S+F +T Q G + VP +
Sbjct 12 DESTKIRGRSNSRGRKSNNIP-------LSFFNPITLQQGSKFWNLCPRDFVPKGIGNR- 63
Query 81 DDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALN 140
D QIGY+ R TR R G+ K+L RW+FYYLGTGP A + DG++WVA +GA+N
Sbjct 64 DQQIGYWNRQTR-YRMVKGQRKELPERWFFYYLGTGPHADAKFKDKLDGVVWVAKDGAMN 122
Query 141 TPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPG 200
P +G+R ANN + L+ +P F E + + S S
Sbjct 123 KPTT-LGSRG-ANNESKALKF--DGKVPGEFQLEV-------NQSRDNSRSRSQSRSRSR 171
Query 201 SSRGTSPARMAGNGGDAALALLLLDRLNQL------ESKMSGKGQQQQGQTVTKKSAAEA 254
+ + + + N D ++ +L L +L + + S +++ + T+ + +
Sbjct 172 NRSQSRGRQQSNNKKDDSVEQAVLAALKKLGVDTEKQQQRSCSKSKERSNSKTRDTTPKN 231
Query 255 SKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAF 314
K KRTA K +VT+ +G R + NFGD +L+ G+ KH+PQ+A+ PS S+
Sbjct 232 ENKHTWKRTAGKG-DVTRFYGARS---SSANFGDSDLVANGSSAKHYPQLAECVPSVSSI 287
Query 315 FGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKK 374
S + +T+T L DP + + + I+AY P+E K+++K
Sbjct 288 LFGSYWTSKEDGDQIEVTFTHKYHLPKDDPKTEQFL----QQINAYAR--PSEVAKEQRK 341
Query 375 KADETQALPQRQKKQQTVTLLPAADLDDFS 404
+ +++ + +++ ++P A +++++
Sbjct 342 RKSRSKSAERSEQE-----VVPDALIENYT 366
>sp|Q04700|NCAP_CVCAK Nucleoprotein OS=Canine coronavirus (strain
K378) OX=33732 GN=N PE=3 SV=1
Length=382
Score = 300 bits (768), Expect = 8e-98, Method: Composition-based stats.
Identities = 105/393 (27%), Positives = 184/393 (47%), Gaps = 37/393 (9%)
Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNNTA--SWFTALT-QHGKEDLKFPRGQGVPINTN 77
++ Q G + +G NNT S+F +T Q G + VP
Sbjct 2 ANQGQRVQWGVDITKKRGLSNSRGRKNNTIPLSFFNPITLQQGSKFWNLCPRDFVPKGIG 61
Query 78 SSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEG 137
+ D QIGY+ R +R R G+ K+L RW+FYYLGTGP A + DG++WVA +G
Sbjct 62 NK-DQQIGYWNRQSR-YRMVKGQRKELPERWFFYYLGTGPHADAKFKDRIDGVVWVAKDG 119
Query 138 ALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNS 197
A+N P +G R ANN + L+ +P F E ++ + S S SRS++ +R+
Sbjct 120 AMNKPTT-LGNRG-ANNESKALKF--DGKVPGEFQLEVNQSRDNSRSPSQSRSQSRNRSQ 175
Query 198 TPGSSRGTSPARMAGNGGDAALALLLLDRLNQL------ESKMSGKGQQQQGQTVTKKSA 251
+ G + + N D ++ +L L +L + + S +++ + T+ +
Sbjct 176 SRG-------RQQSNNKKDDSVEQAVLAALKKLGVDTEKQQQRSRSKSKERSNSKTRDTT 228
Query 252 AEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSA 311
+ K KRTA K +VT+ +G R + NFGD +L+ G KH+PQ+A+ PS
Sbjct 229 PKNENKHTWKRTAGKG-DVTKFYGARS---SSANFGDSDLVANGNGAKHYPQLAECVPSV 284
Query 312 SAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKD 371
S+ S + +T+T L DP + I+AY P+E K+
Sbjct 285 SSILFGSYWTAKEDGDQIEVTFTHKYHLPKDDPK----TGQFLQQINAYAR--PSEVAKE 338
Query 372 KKKKADETQALPQRQKKQQTVTLLPAADLDDFS 404
++++ +++ + +++ ++P A ++++
Sbjct 339 QRQRKARSKSAERVEQE-----VVPDALTENYT 366
>sp|P33463|NCAP_CVPR8 Nucleoprotein OS=Porcine respiratory coronavirus
(strain 86/137004 / isolate British) OX=33736 GN=N
PE=3 SV=1
Length=382
Score = 300 bits (767), Expect = 1e-97, Method: Composition-based stats.
Identities = 100/398 (25%), Positives = 180/398 (45%), Gaps = 45/398 (11%)
Query 14 RITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALT-QHGKEDLKFPRGQGV 72
R+++G D + + S R P S+F +T Q G + V
Sbjct 7 RVSWG---DESTKIRGRSNSRGRKINNIP-------LSFFNPITLQQGAKFWNSCPRDFV 56
Query 73 PINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIW 132
P + D QIGY+ R TR R G+ K+L RW+FYYLGTGP A + DG++W
Sbjct 57 PKGIGNR-DQQIGYWNRQTR-YRMVKGQRKELPERWFFYYLGTGPHADAKFKDKLDGVVW 114
Query 133 VATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRN 192
VA +GA+N P +G+R ANN + L+ +P F E + +
Sbjct 115 VAKDGAMNKPTT-LGSRG-ANNESKALKF--DGKVPGEFQLEV-------NQSRDNSRSR 163
Query 193 SSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQL------ESKMSGKGQQQQGQTV 246
S S + + + + N D ++ +L L +L + + S +++ +
Sbjct 164 SQSRSRSRNRSQSRGRQQSNNKKDDSVEQAVLAALKKLGVYTEKQQQRSRSKSKERSNSK 223
Query 247 TKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQ 306
T+ + + K KRTA K +VT+ +G R + NFGD +L+ G+ KH+PQ+A+
Sbjct 224 TRDTTPKNENKHTWKRTAGKG-DVTRFYGARS---SSANFGDSDLVANGSSAKHYPQLAE 279
Query 307 FAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPT 366
PS S+ S + +T+T L P + + + I+AY P+
Sbjct 280 CVPSVSSILFGSYWTSKEDGDQIEVTFTHKYHLPKDHPKTEQFL----QQINAYAC--PS 333
Query 367 EPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFS 404
E K+++K+ +++ + +++ ++P + +++++
Sbjct 334 EVAKEQRKRKSRSKSAERSEQE-----VVPDSLIENYT 366
>sp|P24411|NCAP_CVPRM Nucleoprotein OS=Porcine respiratory coronavirus
(strain RM4) OX=11148 GN=N PE=3 SV=1
Length=382
Score = 297 bits (759), Expect = 2e-96, Method: Composition-based stats.
Identities = 98/390 (25%), Positives = 176/390 (45%), Gaps = 42/390 (11%)
Query 22 DSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALT-QHGKEDLKFPRGQGVPINTNSSP 80
D + + S R P S+F +T Q G + VP +
Sbjct 12 DESTKIRGRSNSRGRKINNIP-------LSFFNPITLQQGAKFWNSCPRDFVPKGIGNR- 63
Query 81 DDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALN 140
D QIGY+ R TR R G+ K+L RW+FYYLGTGP A + DG++WVA +GA+N
Sbjct 64 DQQIGYWNRQTR-YRMVKGQRKELPERWFFYYLGTGPHADAKFKDKLDGVVWVAKDGAMN 122
Query 141 TPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPG 200
P +G+R ANN + L+ +P F E + + S S
Sbjct 123 KPTT-LGSRG-ANNESKALKF--DGKVPGEFQLEV-------NQSRDNSRSRSQSRSRSR 171
Query 201 SSRGTSPARMAGNGGDAALALLLLDRLNQL------ESKMSGKGQQQQGQTVTKKSAAEA 254
+ + + + N D ++ +L L +L + + S +++ + T+ + +
Sbjct 172 NRSQSRGRQQSNNKKDDSVEQAVLAALKKLGVYTEKQQQRSRSKSKERSNSKTRDTTPKN 231
Query 255 SKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAF 314
K KRTA K +VT+ +G R + NFGD +L+ G+ KH+PQ+A+ PS S+
Sbjct 232 ENKHTWKRTAGKG-DVTRFYGARS---SSANFGDSDLVANGSSAKHYPQLAECVPSVSSI 287
Query 315 FGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKK 374
S + +T+T L P + + + I+AY + P+E K+++K
Sbjct 288 LFGSYWTSKEDGDQIEVTFTHKYHLPKDHPKTEQFL----QQINAYAS--PSELAKEQRK 341
Query 375 KADETQALPQRQKKQQTVTLLPAADLDDFS 404
+ +++ + +++ ++P + +++++
Sbjct 342 RKSRSKSAERSEQE-----VVPDSLIENYT 366
>sp|P04134|NCAP_CVPPU Nucleoprotein OS=Porcine transmissible gastroenteritis
coronavirus (strain Purdue) OX=11151 GN=N PE=1
SV=2
Length=382
Score = 297 bits (759), Expect = 2e-96, Method: Composition-based stats.
Identities = 103/398 (26%), Positives = 177/398 (44%), Gaps = 45/398 (11%)
Query 14 RITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALT-QHGKEDLKFPRGQGV 72
R+++G S T + S R P S+F +T Q G + V
Sbjct 7 RVSWGDESTKT---RGRSNSRGRKNNNIP-------LSFFNPITLQQGSKFWNLCPRDFV 56
Query 73 PINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIW 132
P + D QIGY+ R TR R G+ K+L RW+FYYLGTGP A + DG++W
Sbjct 57 PKGIGNR-DQQIGYWNRQTR-YRMVKGQRKELPERWFFYYLGTGPHADAKFKDKLDGVVW 114
Query 133 VATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRN 192
VA +GA+N P +G+R ANN + L+ +P F E + +
Sbjct 115 VAKDGAMNKPTT-LGSRG-ANNESKALKF--DGKVPGEFQLEV-------NQSRDNSRSR 163
Query 193 SSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQL------ESKMSGKGQQQQGQTV 246
S S + + + N D ++ +L L +L + + S +++ +
Sbjct 164 SQSRSRSRNRSQSRGRQQFNNKKDDSVEQAVLAALKKLGVDTEKQQQRSRSKSKERSNSK 223
Query 247 TKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQ 306
T+ + + K KRTA K +VT+ +G R + NFGD +L+ G+ KH+PQ+A+
Sbjct 224 TRDTTPKNENKHTWKRTAGKG-DVTRFYGARS---SSANFGDTDLVANGSSAKHYPQLAE 279
Query 307 FAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPT 366
PS S+ S + +T+T L DP + I+AY P+
Sbjct 280 CVPSVSSILFGSYWTSKEDGDQIEVTFTHKYHLPKDDPK----TGQFLQQINAYAR--PS 333
Query 367 EPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFS 404
E K+++K+ +++ + ++ ++P A +++++
Sbjct 334 EVAKEQRKRKSRSKSAERSEQ-----DVVPDALIENYT 366
>sp|P25909|NCAP_FIPV Nucleoprotein OS=Feline coronavirus (strain
FIPV WSU-79/1146) OX=33734 GN=N PE=1 SV=1
Length=377
Score = 294 bits (752), Expect = 2e-95, Method: Composition-based stats.
Identities = 103/348 (30%), Positives = 171/348 (49%), Gaps = 23/348 (7%)
Query 51 SWFTALT-QHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWY 109
S++ +T + G + VP + D QIGY+ R R R G+ K+L+ RW+
Sbjct 34 SFYNPITLEQGSKFWNLCPRDLVPKGIGNK-DQQIGYWNRQIR-YRIVKGQRKELAERWF 91
Query 110 FYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPK 169
FY+LGTGP A + DG+ WVA +GA+N P +GTR NN + L+ +P
Sbjct 92 FYFLGTGPHADAKFKDKIDGVFWVARDGAMNKPTT-LGTRG-TNNESKPLRF--DGKIPP 147
Query 170 GFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQ 229
F E + S+ +SRS S+SR+ SRN SRG + N + + +L++L
Sbjct 148 QFQLEVN--RSRNNSRSGSQSRSVSRN--RSQSRGRHHSNNQNNNVEDTIVA-VLEKLGV 202
Query 230 LESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQ 289
+ + S +++ + + + + + K K+TA K +VT +G R + NFGD
Sbjct 203 TDKQRSRSKPRERSDSKPRDTTPKNANKHTWKKTAGKG-DVTTFYGARS---SSANFGDS 258
Query 290 ELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQ 349
+L+ G K +PQIA+ PS S+ S+ E +T T L D +
Sbjct 259 DLVANGNAAKCYPQIAECVPSVSSIIFGSQWSAEEAGDQVKVTLTHTYYLPKDD----AK 314
Query 350 VILLNKHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPA 397
+ IDAYK P+E KD++++ +++ ++ ++ +VTL+ A
Sbjct 315 TSQFLEQIDAYKR--PSEVAKDQRQRRSRSKSA-DKKPEELSVTLVEA 359
>sp|P36298|NCAP_CVCAI Nucleoprotein OS=Canine coronavirus (strain
Insavc-1) OX=36391 GN=N PE=3 SV=1
Length=381
Score = 293 bits (750), Expect = 4e-95, Method: Composition-based stats.
Identities = 98/355 (28%), Positives = 173/355 (49%), Gaps = 24/355 (7%)
Query 51 SWFTALT-QHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWY 109
S+F +T + G + VP + D QIGY+ R TR R G+ K+L +W+
Sbjct 34 SFFNPITLEQGSKFWDLCPRDFVPKGIGNK-DQQIGYWNRQTR-YRMVKGRRKNLPEKWF 91
Query 110 FYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPK 169
FYYLGTGP A + DG++WVA ++ P +GTR NN + L+ +P
Sbjct 92 FYYLGTGPHADAKFKQKLDGVVWVARGDSMTKPTT-LGTRG-TNNESKALKF--DVKVPS 147
Query 170 GFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQ 229
F+ E ++ + SRS SRS++ +R+ + G R S + N A LA L ++
Sbjct 148 EFHLEVNQLRDNSRSRSQSRSQSRNRSQSRG--RQLSNNKKDDNVEQAVLAALKKLGVDT 205
Query 230 LESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQ 289
+ + S +++ + T+ + + K KRTA K +VT+ +G R + NFGD
Sbjct 206 EKQQRSRSKSKERSSSKTRDTTPKNENKHTWKRTAGKG-DVTKFYGARS---SSANFGDS 261
Query 290 ELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQ 349
+L+ G KH+PQ+A+ PS S+ S + +T+T L DP
Sbjct 262 DLVANGNGAKHYPQLAECVPSVSSILFGSHWTAKEDGDQIEVTFTHKYHLPKDDPK---- 317
Query 350 VILLNKHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFS 404
+ I+AY P+E K+++++ ++++ + +++ ++P A ++++
Sbjct 318 TGQFLQQINAYAR--PSEVAKEQRQRKARSKSVERVEQE-----VVPDALTENYT 365
>sp|Q0Q462|NCAP_BC512 Nucleoprotein OS=Bat coronavirus 512/2005
OX=693999 GN=N PE=1 SV=1
Length=394
Score = 256 bits (654), Expect = 2e-80, Method: Composition-based stats.
Identities = 97/375 (26%), Positives = 143/375 (38%), Gaps = 32/375 (9%)
Query 41 RPQGLPNNTA--SWFTALTQHGKEDL-KFPRGQGVPINTNSSPDDQIGYYRRATRRIRGG 97
+P+G S F L ++ L K VP D QIGY+ R R
Sbjct 7 QPRGRSKGRVPLSLFAPLRVTDEKPLYKVLPNNAVPQGMGGK-DQQIGYWVEQQR-WRMR 64
Query 98 DGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAI 157
G DL W+FY+LGTGP + LP+ DG+ WVA +GA P +G R + +
Sbjct 65 RGDRVDLPSNWHFYFLGTGPHSDLPFRKRTDGVFWVAIDGAKTQPTG-LGVRKSSEKPLV 123
Query 158 VLQLP-----------QGTTLPKGFYAEGSRGGSQASSRSSS-----RSRNSSRNSTPGS 201
+ T + G Q++SR +S +SRN SRN + +
Sbjct 124 P-KFKNKLPNNVEIVEPTTPNNSRANSRSRSRGGQSNSRGNSQNRGDKSRNQSRNRSQSN 182
Query 202 SRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQK 261
RG+ AL L + SGK + AEA KP +
Sbjct 183 DRGSDSRDDLVAAVKKALEDLGVGAAKPKGKTQSGKNTPKNKSRSGSVQRAEAKDKPEWR 242
Query 262 RTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIG 321
RT + +V FG RG + NFG E + +G + + Q A P A+A +
Sbjct 243 RTPSGDESVEVCFGPRGGTR---NFGSSEFVAKGVNAPGYAQAASLVPGAAALLFGGNVA 299
Query 322 MEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQA 381
+ G +TYT + + D N + + +DAYK P +K K+ +
Sbjct 300 TKEMADGVEITYTYKMLVPKDDKNLE----IFLAQVDAYKLGDPKPQRKVKRSRTP--TP 353
Query 382 LPQRQKKQQTVTLLP 396
P + V P
Sbjct 354 KPATEPVYDDVAADP 368
>sp|Q07499|NCAP_PEDV7 Nucleoprotein OS=Porcine epidemic diarrhea
virus (strain CV777) OX=229032 GN=N PE=1 SV=1
Length=441
Score = 243 bits (620), Expect = 6e-75, Method: Composition-based stats.
Identities = 99/386 (26%), Positives = 147/386 (38%), Gaps = 75/386 (19%)
Query 36 RSKQRRPQGLPNNTASWFTALTQHGKEDL-KFPRGQGVPINTNSSPDDQIGYYRRATRRI 94
R ++R P S + L + L K VP N + D QIGY+ R
Sbjct 9 RGRKRVP-------LSLYAPLRVTNDKPLSKVLANNAVPTNKGNK-DQQIGYWNEQIR-W 59
Query 95 RGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANN 154
R G+ + W+FYYLGTGP L Y +G+ WVA EGA P ++G R +
Sbjct 60 RMRRGERIEQPSNWHFYYLGTGPHGDLRYRTRTEGVFWVAKEGAKTEPT-NLGVRKASEK 118
Query 155 AAIV---------LQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSS--R 203
I +++ + T P SR ++RS S S N N + G+S R
Sbjct 119 PIIPKFSQQLPSVVEIVEPNTPPASRANSRSRSRGNGNNRSRSPSNNRGNNQSRGNSQNR 178
Query 204 GTSPARMAG-------------------------NGGDAALALLLLDRLNQLESKMSGKG 238
G + R A GG + L+ + L+S G+
Sbjct 179 GNNQGRGASQNRGGNNNNNNKSRNQSNNRNQSNDRGGVTSRDDLVAAVKDALKSLGIGEN 238
Query 239 QQQQ--------------GQTVTKKSAAEASKK-------PRQKRTATKAYNVTQAFGRR 277
+ G+ KK+ + A+ K P +R +V FG R
Sbjct 239 PDRHKQQQKPKQEKSDNSGKNTPKKNKSRATSKERDLKDIPEWRRIPKGENSVAACFGPR 298
Query 278 GPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAI 337
G + NFGD E + +G D + QIA AP+ +A + + +TY +
Sbjct 299 GGFK---NFGDAEFVEKGVDASGYAQIASLAPNVAALLFGGNVAVRELADSYEITYNYKM 355
Query 338 KLDDKDPNFKDQVILLNKHIDAYKTF 363
+ DPN V LL +DA+KT
Sbjct 356 TVPKSDPN----VELLVSQVDAFKTG 377
>sp|P15130|NCAP_CVH22 Nucleoprotein OS=Human coronavirus 229E
OX=11137 GN=N PE=1 SV=2
Length=389
Score = 232 bits (590), Expect = 4e-71, Method: Composition-based stats.
Identities = 91/378 (24%), Positives = 148/378 (39%), Gaps = 33/378 (9%)
Query 50 ASWFTALTQHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWY 109
S ++ L ++ K VPIN + IGY+ +R R GK DLSP+ +
Sbjct 22 YSLYSPLLVDSEQPWKVIPRNLVPINKKDK-NKLIGYWN-VQKRFRTRKGKRVDLSPKLH 79
Query 110 FYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVL---QLPQGTT 166
FYYLGTGP + +G++WVA +GA P + G R + I +LP G T
Sbjct 80 FYYLGTGPHKDAKFRERVEGVVWVAVDGAKTEPTGY-GVRRKNSEPEIPHFNQKLPNGVT 138
Query 167 LPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDR 226
+ + + S S R + ++ P S R + AAL L D+
Sbjct 139 VVEEPDSRAPSRSQSRSQ-SRGRGESKPQSRNPSSDRNHNSQDDIMKAVAAALKSLGFDK 197
Query 227 LNQLESKMSGKG------------QQQQGQTVTKKSAAEAS------KKPRQKRTATKAY 268
+ + K + G Q +++ + ++E +KPR KR
Sbjct 198 PQEKDKKSAKTGTPKPSRNQSPASSQTSAKSLARSQSSETKEQKHEMQKPRWKRQPNDDV 257
Query 269 --NVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTP 326
NVTQ FG R NFG ++ G K +PQ A+ PS +A S I + +
Sbjct 258 TSNVTQCFGPR---DLDHNFGSAGVVANGVKAKGYPQFAELVPSTAAMLFDSHIVSKESG 314
Query 327 SGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQALPQRQ 386
+ LT+T + + P+ + LN + P P + +Q P
Sbjct 315 NTVVLTFTTRVTVPKDHPHLGKFLEELNAFTREMQQHPLLNPSALEFNP---SQTSPATA 371
Query 387 KKQQTVTLLPAADLDDFS 404
+ + + +D+ +
Sbjct 372 EPVRDEVSIETDIIDEVN 389
>sp|Q6Q1R8|NCAP_CVHNL Nucleoprotein OS=Human coronavirus NL63
OX=277944 GN=N PE=1 SV=1
Length=377
Score = 206 bits (525), Expect = 2e-61, Method: Composition-based stats.
Identities = 96/382 (25%), Positives = 142/382 (37%), Gaps = 37/382 (10%)
Query 33 SGARSKQRRPQGLPNNTASWFTALTQHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATR 92
AR K P S K + VPI + D+QIGY+ R
Sbjct 10 RAARKKFPPPSFYMPLLVS-------SDKAPYRVIPRNLVPIGKGNK-DEQIGYWNVQER 61
Query 93 RIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPA 152
R G+ DL P+ +FYYLGTGP L + DG++WVA EGA +G R
Sbjct 62 -WRMRRGQRVDLPPKVHFYYLGTGPHKDLKFRQRSDGVVWVAKEGAKTVNTS-LGNRKRN 119
Query 153 NNAAIVLQLPQGTTLPKGFYA---EGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPAR 209
L+ LP E S +S SS NS +S S + +
Sbjct 120 ---QKPLEPKFSIALPPELSVVEFEDRSNNSSRASSRSSTRNNSRDSSRSTSRQQSRTRS 176
Query 210 MAGNGGDAALALLLLDRLN---------QLESKMSGKGQQQQGQTVTKKSAAEASKKPRQ 260
+ +A + L N S S + + + + KKPR
Sbjct 177 DSNQSSSDLVAAVTLALKNLGFDNQSKSPSSSGTSTPKKPNKPLSQPRADKPSQLKKPRW 236
Query 261 KRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRI 320
KR T+ NV Q FG R N GD +L++ G D K +PQ+A+ P+ +A F S +
Sbjct 237 KRVPTREENVIQCFGPR---DFNHNMGDSDLVQNGVDAKGFPQLAELIPNQAALFFDSEV 293
Query 321 GMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQ 380
+ +TYT + + + N + + I A+ T+P K+ ++ +
Sbjct 294 STDEVGDNVQITYTYKMLVAKDNKNLPKFI----EQISAF-----TKPSSIKEMQSQSSH 344
Query 381 ALPQRQKKQQTVTLLPAADLDD 402
P AD D
Sbjct 345 VAQNTVLNASIPESKPLADDDS 366
>sp|A9KNW4|IF2_LACP7 Translation initiation factor IF-2 OS=Lachnoclostridium
phytofermentans (strain ATCC 700394 / DSM 18823
/ ISDg) OX=357809 GN=infB PE=3 SV=1
Length=1131
Score = 44.4 bits (103), Expect = 0.002, Method: Composition-based stats.
Identities = 54/318 (17%), Positives = 87/318 (27%), Gaps = 44/318 (14%)
Query 1 MSDNGPQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHG 60
M+ G + + +T G ++S + Q+ + RRPQG N T G
Sbjct 98 MTAQGERKNMSEQNVT-TGSTESEDNIQSVGDRKYQHTDRRPQG---NNGEGPQTSTNSG 153
Query 61 KEDLK--------FPRGQGV----PINTNSSPDDQIGYYRRAT--RRIRGGDGKMKDLSP 106
+ P+GQ P N + G R R G +
Sbjct 154 DRRPQGQGSYGDRRPQGQNSGDRRPYNGDRPQGQNSGDRRPYNGDRPQGQNSGDRRP--- 210
Query 107 RWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTP--------KDHIGTRNPANNAAIV 158
Y G P+ YG + P + + G R P +
Sbjct 211 -----YNGDRPQGQGNYGDRRPQ----GQNSGDRRPYNGDRPQGQGNYGDRRPQGQGSYG 261
Query 159 LQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAA 218
+ P P+G G R S R + +G+ R G G
Sbjct 262 DRRPNSGDRPQGQGNYGDRRPQGQGSYGDRRPQGQGSYGDRPQGQGSYGDRPQGQGSYGD 321
Query 219 LALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRG 278
+ G + + + R + +G R
Sbjct 322 RRPQGQGSYGDRRPQGQGSYGDRPQGQGSYGDRRPQGQGSYGDRPQGQGN-----YGDRR 376
Query 279 PEQTQGNFGDQELIRQGT 296
P QG++GD+ QG+
Sbjct 377 PGG-QGSYGDRRPQGQGS 393
>sp|Q9XIN7|NAC40_ARATH NAC domain-containing protein 40 OS=Arabidopsis
thaliana OX=3702 GN=NTL8 PE=1 SV=1
Length=335
Score = 40.2 bits (92), Expect = 0.023, Method: Composition-based stats.
Identities = 38/192 (20%), Positives = 67/192 (35%), Gaps = 21/192 (11%)
Query 67 PRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGAN 126
RG+ P + S Q+GY++ + G + R +++G P G
Sbjct 76 ARGRKYPHGSQSRRATQLGYWKATGKERSVKSGNQVVGTKRTLVFHIGRAPR-----GER 130
Query 127 KDGIIWVATE----GALNTPKDHIGT---RNPANNAAIVLQLPQGTTLPKGFYAEGSRGG 179
+ W+ E GA P+D + R A+ A Q + + Y G RGG
Sbjct 131 TE---WIMHEYCIHGA---PQDALVVCRLRKNADFRASSTQKMEDGVVQDDGYV-GQRGG 183
Query 180 SQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQ 239
+ +S S + N S + + D A +L D + +L+ + Q
Sbjct 184 LEKEDKSYYESEHQIPNGDIAESSNVVEDQADTD--DDCYAEILNDDIIKLDEEALKASQ 241
Query 240 QQQGQTVTKKSA 251
+ T +
Sbjct 242 AFRPTNPTHQET 253
>sp|O61345|PENG_DROME Protein penguin OS=Drosophila melanogaster
OX=7227 GN=peng PE=2 SV=1
Length=737
Score = 39.8 bits (91), Expect = 0.043, Method: Composition-based stats.
Identities = 27/163 (17%), Positives = 47/163 (29%), Gaps = 18/163 (11%)
Query 135 TEGALNTPKDHIGTRNPANNAAIVLQ--LPQGTTLPKGFYAEGSRGGSQASSRSSSRSRN 192
G P G R + + G K F G G + ++ +
Sbjct 29 ANGQKFKPGGAGGARKFDKFGGGAGKSFVKPGAGGAKKFDKSGPGGFKKFDKSGATGDKR 88
Query 193 SSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAA 252
N G T P A ++ + + S K + + A
Sbjct 89 LGGNKFRGKP-QTQPQAPAEGEKQD-WNKFKKEKKDLKLKRKSAKDTYEISK-----EAN 141
Query 253 EASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGD--QELIR 293
+ +K R +RT K V Q + N GD ++++
Sbjct 142 QIHEKLRCRRTENKDKLVEQIY-------KVLNVGDTISKVVK 177
>sp|Q9NBL2|MSL3_DROVI Protein male-specific lethal-3 OS=Drosophila
virilis OX=7244 GN=msl-3 PE=3 SV=1
Length=543
Score = 39.4 bits (90), Expect = 0.052, Method: Composition-based stats.
Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 14/115 (12%)
Query 148 TRNPANNA-AIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTS 206
+P + I L T P+ + S+ S +RSR+ S N + +S G
Sbjct 148 VEDPTADPLDISLAHLPATPKPELPAQQKRGARSRDGS--GNRSRDGSGNRSRDNSSGRK 205
Query 207 PARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQK 261
R GGD + + Q K + ++K +
Sbjct 206 KQRDKSKGGD-----------KNDDGERRSARSQFSLHVSPKDTHTTDAEKRIHQ 249
>sp|Q7UZZ9|IF2_PROMP Translation initiation factor IF-2 OS=Prochlorococcus
marinus subsp. pastoris (strain CCMP1986 / NIES-2087
/ MED4) OX=59919 GN=infB PE=3 SV=1
Length=1169
Score = 39.0 bits (89), Expect = 0.081, Method: Composition-based stats.
Identities = 47/259 (18%), Positives = 74/259 (29%), Gaps = 25/259 (10%)
Query 5 GPQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHGKEDL 64
G QN++ P GGP N+ G + R QG PN
Sbjct 324 GGQNRQGVPNREGGGPYRQGSPNRPGTPN--RPGTPYRQGAPN---------------RP 366
Query 65 KFPRGQGVPINTNSSPDDQIGYYRRATRRIRGG-DGKMKDLSPRWYFYYLGTGPEAGLPY 123
QGVP P Q G R R G G K ++P T A
Sbjct 367 GGQNRQGVPNREGGGPYRQ-GSPNRPGTPYRQGASGIRKPVAPNELMQLQKT--NASNKE 423
Query 124 GANKDGIIWVATEGA--LNTPKDHIGTRNPANNAAIVLQ-LPQGTTLPKGFYAEGSRGGS 180
N + EGA + +P+ A + T P G
Sbjct 424 KPNISNVNKQKIEGANQKTKAPNSRLNTSPSPTAKKPARSFASNTKKP-GRTDWDDSAKL 482
Query 181 QASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQ 240
+A + + + + + + +G ++ L R + +S+ +
Sbjct 483 EALRNKNPQKQRQKVHIIGENDDSLTSETSGYSGEKVSILSASLARPKKEKSEEIKSQKP 542
Query 241 QQGQTVTKKSAAEASKKPR 259
+ KK +K R
Sbjct 543 SKQFKKKKKETTRQRQKRR 561
>sp|P17029|ZKSC1_HUMAN Zinc finger protein with KRAB and SCAN
domains 1 OS=Homo sapiens OX=9606 GN=ZKSCAN1 PE=1 SV=3
Length=563
Score = 38.6 bits (88), Expect = 0.11, Method: Composition-based stats.
Identities = 21/141 (15%), Positives = 43/141 (30%), Gaps = 13/141 (9%)
Query 172 YAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLE 231
G + ++ + +R N G + + + + +
Sbjct 239 EEWGCQNLARRNLSRDNRQENYGSAFPQGGEN-RNENEESTSKAETSEDSASRGETTGRS 297
Query 232 SKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATK--AYNVTQAFGRRGPEQT------- 282
K G+ + Q+G+T ++ K ++KR + + G RGP +
Sbjct 298 QKEFGEKRDQEGKTGERQQKNPEEKTRKEKRDSGPAIGKDKKTITGERGPREKGKGLGRS 357
Query 283 ---QGNFGDQELIRQGTDYKH 300
NF E + GT
Sbjct 358 FSLSSNFTTPEEVPTGTKSHR 378
>sp|Q28FY7|DBF4A_XENTR Protein DBF4 homolog A OS=Xenopus tropicalis
OX=8364 GN=dbf4 PE=2 SV=1
Length=663
Score = 37.1 bits (84), Expect = 0.31, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 46/142 (32%), Gaps = 11/142 (8%)
Query 136 EGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSR 195
EG L+ ++ T L+ P+ G S + R +S +
Sbjct 53 EGFLSKEISYLITSKKEAKCVKTLKYVCSVPSPEPAQNTGESSTSPGNRRLPQEGNSSKK 112
Query 196 NSTPGSSRGTSPARMAGNGGDAALALLLLDR--------LNQLESKMSGKGQQQQGQTVT 247
N SRG S + A + +L L+ E+K + ++ Q V
Sbjct 113 NEKSLVSRGKSLVKKAIKEQEILPKNSILSNALNWGVKILHVEEAKRYIEKKKSSLQQVK 172
Query 248 KKS---AAEASKKPRQKRTATK 266
K +E+ R+K K
Sbjct 173 KSQPVVKSESKHPARRKVKPQK 194
>sp|A8PKH2|EIF3A_BRUMA Eukaryotic translation initiation factor
3 subunit A OS=Brugia malayi OX=6279 GN=Bm1_29045 PE=3 SV=1
Length=1096
Score = 37.1 bits (84), Expect = 0.36, Method: Composition-based stats.
Identities = 20/108 (19%), Positives = 34/108 (31%), Gaps = 11/108 (10%)
Query 117 PEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQL-----PQGTTLPKGF 171
P P+ G+I VA + A ++ + T P +L P G
Sbjct 990 PADAGPWRR---GMI-VARDQADSSQRTSAAT--PTTQPWRPSRLRQADGAPVNGAPSGR 1043
Query 172 YAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAAL 219
EGS + + + + + + S RG S + D
Sbjct 1044 ILEGSGSNEPSIGKWNRSIQRTGDSHGAQSFRGISQHQQRRGAADDDR 1091
>sp|Q09779|THO2_SCHPO THO complex subunit 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812 GN=tho2 PE=1
SV=3
Length=1628
Score = 36.3 bits (82), Expect = 0.64, Method: Composition-based stats.
Identities = 37/261 (14%), Positives = 78/261 (30%), Gaps = 37/261 (14%)
Query 6 PQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHGKEDLK 65
P+ R A R D S+ +R + + + N ++++H + + +
Sbjct 1395 PEGNRRALRTRTPTNEDIQRSDSKLREDQSRDRTPQSRSFTNENNDNLRSVSRHTRREPQ 1454
Query 66 FPRGQGVPINTNSS---PDDQIGYYRR---ATRRIRGGDGKMKDLSPRWYFYYLGTGPEA 119
+ N N+ + +R+ R R + ++S +
Sbjct 1455 QAQ------NLNARREHESQKSDRWRQNGNVNRNPRVSNNNSTNVSRE---------RSS 1499
Query 120 GLPYGANKDGIIWVATEGALNTPKDHI-GTRNPANNAAIVLQLPQGTTLPKGFYAEGSRG 178
+ + D TEG + I G N N AI A S G
Sbjct 1500 EANHRTSNDNKRDEVTEGKDKNKRQDISGESNSRQNNAIS-------------RAGRSNG 1546
Query 179 GSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKG 238
++ + + R S+ ++ R + + + +
Sbjct 1547 SNRGNDSRDADGRRSTHYASNKRPRSSDSQSPSNLREEDERENSRRRARQDDRRDRDSRQ 1606
Query 239 QQQQGQTVTKKSAAEASKKPR 259
Q+ + + T +SA +K R
Sbjct 1607 QRDRPRDRTSRSAR--EEKRR 1625
>sp|A2C4P1|IF2_PROM1 Translation initiation factor IF-2 OS=Prochlorococcus
marinus (strain NATL1A) OX=167555 GN=infB PE=3
SV=1
Length=1183
Score = 36.3 bits (82), Expect = 0.71, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 2/105 (2%)
Query 164 GTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMA--GNGGDAALAL 221
GT P +G G A+ + ++R N R SP R G +L
Sbjct 338 GTGRPGSQNRQGPNRGGVANRTTQGQNRPGGNNRAGAPVRSGSPNRGGIQNRPGVPTRSL 397
Query 222 LLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATK 266
+R N SG + + + +A Q++T +
Sbjct 398 GGPNRSNNRPGVPSGMRKPVAPSELMQLQKPQARPNAPQRKTDSP 442
>sp|A2BT70|IF2_PROMS Translation initiation factor IF-2 OS=Prochlorococcus
marinus (strain AS9601) OX=146891 GN=infB PE=3
SV=1
Length=1126
Score = 36.0 bits (81), Expect = 0.87, Method: Composition-based stats.
Identities = 22/126 (17%), Positives = 39/126 (31%), Gaps = 2/126 (2%)
Query 168 PKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRL 227
P GS +R S + N+ PGS + L L
Sbjct 317 PSDQGRPGSFNRQGNPNRPGSPNGPGMPNNRPGSKFNGQNSSGIRKPVSPNELLQLQKNN 376
Query 228 NQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFG 287
N + K+ K +Q V K+ A + +P T + + F + + ++
Sbjct 377 NSEKDKIGIKNNSKQNIEVPKQKAKAPNNRP--NATPSSKKPPHRTFSNSSKKPGKTDWD 434
Query 288 DQELIR 293
D +
Sbjct 435 DSAKLE 440
>sp|Q5R670|ZKSC1_PONAB Zinc finger protein with KRAB and SCAN
domains 1 OS=Pongo abelii OX=9601 GN=ZKSCAN1 PE=2 SV=1
Length=563
Score = 35.2 bits (79), Expect = 1.2, Method: Composition-based stats.
Identities = 21/141 (15%), Positives = 43/141 (30%), Gaps = 13/141 (9%)
Query 172 YAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLE 231
G + ++ + ++ N G + + + + A
Sbjct 239 EEWGCQNLARRNLSRDNKQENYGSAFPQGGEN-RNENEESTSKAETAEDSASHGETAGRF 297
Query 232 SKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATK--AYNVTQAFGRRGPEQT------- 282
K G+ + Q+G+T ++ K ++KR + + G RGP +
Sbjct 298 QKEFGEKRDQEGKTGERQQKNPEEKTGKEKRDSGPATGKDKKTITGERGPREKGKGLGRS 357
Query 283 ---QGNFGDQELIRQGTDYKH 300
NF E + GT
Sbjct 358 FSLSSNFTTPEEVPTGTKSHR 378
>sp|P12348|PER_DROPS Period circadian protein OS=Drosophila pseudoobscura
pseudoobscura OX=46245 GN=per PE=3 SV=3
Length=1271
Score = 35.2 bits (79), Expect = 1.5, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 37/119 (31%), Gaps = 4/119 (3%)
Query 134 ATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNS 193
GA N+ D+ G N + + T P AE SR +SR+ + +
Sbjct 763 GNSGADNSAADNFGADNSGPDNSGADNSGPDNTGPDNSGAENSRAE---NSRADNSRPDH 819
Query 194 SRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAA 252
R G+S P + + A + S GQ + T S
Sbjct 820 PRPDISGASNSR-PDKTGPDKSGAENSASGSGSGTSGNEGPSSGGQDTRTTAGTPDSPP 877
>sp|Q46J13|IF2_PROMT Translation initiation factor IF-2 OS=Prochlorococcus
marinus (strain NATL2A) OX=59920 GN=infB PE=3 SV=1
Length=1183
Score = 35.2 bits (79), Expect = 1.5, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 2/105 (2%)
Query 164 GTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMA--GNGGDAALAL 221
GT P +G G A+ + ++R + N R SP R G +L
Sbjct 338 GTGRPGSPNRQGPNRGGVANRTTQGQNRPGANNRAGAPVRSGSPNRGGMQNRPGVPTRSL 397
Query 222 LLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATK 266
+R N SG + + + +A Q++T +
Sbjct 398 GGPNRSNNRPGVPSGMRKPVAPSELMQLQKPQARPNAPQRKTDSP 442
>sp|O35893|SP100_MUSCR Nuclear autoantigen Sp-100 OS=Mus caroli
OX=10089 GN=Sp100 PE=2 SV=2
Length=482
Score = 34.4 bits (77), Expect = 1.8, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 55/161 (34%), Gaps = 16/161 (10%)
Query 133 VATEGALNTPKDHIGTRNPAN--NAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRS 190
V E + + + TR N + V++L G + ++E + + + SR+
Sbjct 242 VKKENSSFSLAGNQQTRARTNQNEDSEVIELSSGDSDDGENFSEATTTIPSQPAPAYSRT 301
Query 191 RNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKS 250
+ R G + T + + +RL + + +T
Sbjct 302 PPTLRTDRRGDTSDTESSIIIRRRKRTGRKKR--ERLGSYLIRNIKIPMKTSWKTAVLAR 359
Query 251 AAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQEL 291
+A S + R+KR G R P + +FG EL
Sbjct 360 SANTSSQRRRKR------------GPRIPREENADFGGAEL 388
>sp|Q5UP83|YL004_MIMIV Putative KilA-N domain-containing protein
L4 OS=Acanthamoeba polyphaga mimivirus OX=212035 GN=MIMI_L4
PE=4 SV=1
Length=454
Score = 34.4 bits (77), Expect = 1.9, Method: Composition-based stats.
Identities = 14/83 (17%), Positives = 28/83 (34%), Gaps = 3/83 (4%)
Query 171 FYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQL 230
Y E S ++ SR+ S ++ SR+ + + + L +
Sbjct 14 RYIEDSDDETRGRSRNRSIEKSRSRSLDKSQKKSRDKSLTRSRSKSPEKSKSRSKSLTRS 73
Query 231 ESKMSGK---GQQQQGQTVTKKS 250
SK K G ++ + K +
Sbjct 74 RSKSPKKCITGNRKNSKHTKKDN 96
>sp|Q96A59|MALD3_HUMAN MARVEL domain-containing protein 3 OS=Homo
sapiens OX=9606 GN=MARVELD3 PE=2 SV=3
Length=401
Score = 34.4 bits (77), Expect = 2.0, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 21/87 (24%), Gaps = 0/87 (0%)
Query 177 RGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSG 236
R + R R S + P R G+ + G
Sbjct 29 RTHDRPRDRPGDPRRKRSSDGNRRRDGDRDPERDQERDGNRDRNRDRERERERERDPDRG 88
Query 237 KGQQQQGQTVTKKSAAEASKKPRQKRT 263
+ + +KPRQ RT
Sbjct 89 PRRDTHRDAGPRAGEHGVWEKPRQSRT 115
>sp|Q6NY19|KANK3_HUMAN KN motif and ankyrin repeat domain-containing
protein 3 OS=Homo sapiens OX=9606 GN=KANK3 PE=1 SV=2
Length=821
Score = 34.4 bits (77), Expect = 2.4, Method: Composition-based stats.
Identities = 22/144 (15%), Positives = 41/144 (28%), Gaps = 13/144 (9%)
Query 147 GTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTS 206
G R+P++ ++ L Y E G A + R PG + S
Sbjct 26 GARSPSSPYSVETPYGFHLDLDFLKYIEELERGPAARRAPGPPTSRRPRAPRPGLAGARS 85
Query 207 PA---RMAGNGGDAALALLLL---DRLNQLESKMSGKGQQQQGQT--VTKKSAAEASKKP 258
P D A +L L +S + + + ++++
Sbjct 86 PGAWTSSESLASDDGGAPGILSQGAPSGLLMQPLSPRAPVRNPRVEHTLRETSRRLELAQ 145
Query 259 RQKRTATKAYNVTQAFGRRGPEQT 282
+R + V R P +
Sbjct 146 THERAPSPGRGV-----PRSPRGS 164
>sp|Q62018|CTR9_MOUSE RNA polymerase-associated protein CTR9 homolog
OS=Mus musculus OX=10090 GN=Ctr9 PE=1 SV=2
Length=1173
Score = 34.4 bits (77), Expect = 2.4, Method: Composition-based stats.
Identities = 15/116 (13%), Positives = 32/116 (28%), Gaps = 25/116 (22%)
Query 174 EGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESK 233
EG S + S R + + + AG+ + E
Sbjct 1031 EGHPRNSNSDSDDDERPNRRASSESDSDDNQNKSGSEAGSPRRSGRQ-------ESDEDS 1083
Query 234 MSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQ 289
S + +++ ++ +++S E+ + R P N D
Sbjct 1084 DSDQPSRKRRRSGSEQSDNESVQ------------------SGRSPSGASENENDS 1121
>sp|A2BYM0|IF2_PROM5 Translation initiation factor IF-2 OS=Prochlorococcus
marinus (strain MIT 9515) OX=167542 GN=infB PE=3
SV=1
Length=1161
Score = 34.0 bits (76), Expect = 3.1, Method: Composition-based stats.
Identities = 24/153 (16%), Positives = 46/153 (30%), Gaps = 20/153 (13%)
Query 135 TEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGF-YAEGSRGGSQ--ASSRSSSRSR 191
+G N P + N + G +G G G ++ A +R S R
Sbjct 307 RQGVSNRPGGGQNRQGVPNRPGSPYR--PGNPNRQGMSNRPGVGGQNRQGAPNRQGSPYR 364
Query 192 NSSRNSTPGSSRG----TSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVT 247
N G+ R S ++ + + L QL+ + ++
Sbjct 365 QGDPNRQGGNYRQGDLNRSGSKFNNQNPSGIRKPVAPNELMQLQKTNASDKEKLNRSNFE 424
Query 248 KKSAAEASKK-----------PRQKRTATKAYN 269
K+ +K P K+T +++
Sbjct 425 KQKVEPPKQKAKAPNSRLNASPTAKKTPHRSFT 457
>sp|Q3AZB7|IF2_SYNS9 Translation initiation factor IF-2 OS=Synechococcus
sp. (strain CC9902) OX=316279 GN=infB PE=3 SV=1
Length=1176
Score = 33.6 bits (75), Expect = 4.4, Method: Composition-based stats.
Identities = 42/247 (17%), Positives = 67/247 (27%), Gaps = 12/247 (5%)
Query 6 PQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQ------- 58
P R PR Q + RP P A T
Sbjct 260 PAPSRPTPRPAAAPSRPGAPQGQKPQIVSRAGAPPRPGTPPRVGAPTKTGTPARPTPRPE 319
Query 59 -HGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGP 117
GK + G G P + + G R R G +G
Sbjct 320 LVGKPVPRRTGGVGAPQRPGTGVPQRQGGPARPGAPTRTGKPGAPTRPGGNTLELVGKPI 379
Query 118 EAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSR 177
+ + G GA P G R P + +QL + + P
Sbjct 380 RRDGSSASGRPGA--PTRPGAPTRPGMPGGMRKPVAPGEL-MQLQKPISRPAAPAPRRPD 436
Query 178 GGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGK 237
++ + + + + +R + P + R R GG D +LE+ S
Sbjct 437 APNRPTEAAGTATPPVARPTAPSAPR-RPGFRPGAPGGQRRPGRPDWDDSAKLEALRSRS 495
Query 238 GQQQQGQ 244
Q+Q+ +
Sbjct 496 PQKQRQK 502
>sp|Q9VJ87|CWC22_DROME Pre-mRNA-splicing factor CWC22 homolog
OS=Drosophila melanogaster OX=7227 GN=ncm PE=1 SV=3
Length=1330
Score = 33.3 bits (74), Expect = 6.0, Method: Composition-based stats.
Identities = 19/114 (17%), Positives = 38/114 (33%), Gaps = 4/114 (4%)
Query 149 RNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPA 208
R + + + + P+ E SR + R SRN + S RG
Sbjct 1198 RKRDRSRSYERPTIRENSAPREKRMESSRSEKDSR-RGDRSSRNERSDRGERSDRGERSD 1256
Query 209 RMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKR 262
R G D +R ++ E + ++ + + + + + +KR
Sbjct 1257 R--GERSDRGERSDRGERSDRGERSD-REKERSRAKERERDRDRDLKGQRERKR 1307
>sp|B1MZH4|IF2_LEUCK Translation initiation factor IF-2 OS=Leuconostoc
citreum (strain KM20) OX=349519 GN=infB PE=3 SV=1
Length=840
Score = 32.9 bits (73), Expect = 6.3, Method: Composition-based stats.
Identities = 26/164 (16%), Positives = 55/164 (34%), Gaps = 15/164 (9%)
Query 135 TEGALNTPKDHIGTRNPANNAAIVLQLPQ-------GTTLPKGFYAEGSRGGSQASSRSS 187
A TP+ + R + + G + ++ G + + R
Sbjct 41 NSSAGTTPRSNKPARQGQSQGQGQNRHTNSSRSNTQGGNASRPNQSKSQGQGGRNNQRPG 100
Query 188 SRSRNSS-----RNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQ 242
SR++ S R S++ D +L + + + ++ + ++
Sbjct 101 SRTQASEGRPMIREKKNWSTKPREGQIDYSKKTDNSLKQYVSENEKRKQA--AAAKTTKK 158
Query 243 GQTVTKKSAAEASK-KPRQKRTATKAYNVTQAFGRRGPEQTQGN 285
+KK+A + ++ KP+ T T A G+ G GN
Sbjct 159 PAEQSKKAAEKPAQTKPKTAETKTTATTTQSGTGKFGGALASGN 202
>sp|Q9C0D6|FHDC1_HUMAN FH2 domain-containing protein 1 OS=Homo
sapiens OX=9606 GN=FHDC1 PE=1 SV=2
Length=1143
Score = 32.9 bits (73), Expect = 6.7, Method: Composition-based stats.
Identities = 42/256 (16%), Positives = 84/256 (33%), Gaps = 22/256 (9%)
Query 6 PQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTAL-----TQHG 60
P+N+ P +D + + E + +R + P+ S + + +Q
Sbjct 762 PENKDPRPLFCISDTTDCSLTLDCSEGTDSRPRGGDPEEGGEGDGSMSSGVGEMGDSQVS 821
Query 61 KEDLKFPRGQG-VPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEA 119
P G+ P++ +S P + G R + K R G
Sbjct 822 SNPTSSPPGEAPAPVSVDSEPSCKGG-----LPRDKPTKRKDVVAPKR--------GSLK 868
Query 120 GLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGG 179
GA+K G ++GA+ + T + + V+ + + + E S G
Sbjct 869 EASPGASKPGSA-RRSQGAVAKSVRTL-TASENESMRKVMPITKSSRGAGWRRPELSSRG 926
Query 180 SQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQ 239
+ SS+ + S +NS +S G R+ ++ D Q K
Sbjct 927 PSQNPPSSTDTVWSRQNSVRRASTGAEEQRLPRGSSGSSSTRPGRDVPLQPRG-SFKKPS 985
Query 240 QQQGQTVTKKSAAEAS 255
+ + + ++ E
Sbjct 986 AKPLRNLPRQKPEENK 1001
>sp|Q38W81|IF2_LATSS Translation initiation factor IF-2 OS=Latilactobacillus
sakei subsp. sakei (strain 23K) OX=314315 GN=infB
PE=3 SV=1
Length=937
Score = 32.9 bits (73), Expect = 7.2, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 40/125 (32%), Gaps = 12/125 (10%)
Query 138 ALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNS 197
A P H R PQ G + G + A ++S N+SR +
Sbjct 91 ADKKPAQHSNNR------------PQANANRNGQASNGQNRTNNARPNNNSARPNNSRPN 138
Query 198 TPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKK 257
T S R +L + + + QQ++ + +K E + +
Sbjct 139 TNSRPNNNSQNRSTSANHPMSLQEQISQANARRQRTQERIQQQREQREADEKKRREQANR 198
Query 258 PRQKR 262
PR R
Sbjct 199 PRPTR 203
>sp|Q6P1L5|F117B_HUMAN Protein FAM117B OS=Homo sapiens OX=9606
GN=FAM117B PE=1 SV=2
Length=589
Score = 32.5 bits (72), Expect = 8.5, Method: Composition-based stats.
Identities = 23/127 (18%), Positives = 36/127 (28%), Gaps = 7/127 (6%)
Query 157 IVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGD 216
I +P G P S S + R S NS+ S + N G
Sbjct 368 IPQDIPDGHRAPPPLVQRSSSTRSIDTQTPGGADR-GSNNSSRSQSVSPTSFLTISNEGS 426
Query 217 AALALLLLDRLNQLESKMSGKGQQQQGQTVTK-KSAAEASKKPRQKRTATKAYNVTQAFG 275
D L K +G + K ++ + + KR + + F
Sbjct 427 EESPCSADDLLVDPRDKENG-----NNSPLPKYATSPKPNNSYMFKREPPEGCERVKVFE 481
Query 276 RRGPEQT 282
P+Q
Sbjct 482 ECSPKQL 488
>sp|Q2UB17|ESF2_ASPOR Pre-rRNA-processing protein esf2 OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=esf2
PE=3 SV=1
Length=335
Score = 32.1 bits (71), Expect = 8.7, Method: Composition-based stats.
Identities = 19/113 (17%), Positives = 35/113 (31%), Gaps = 12/113 (11%)
Query 174 EGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESK 233
E + G + + S++R S R T + + D L L + +
Sbjct 18 EDNDRGYDSEAAEESKARISKRRRTQTQDDESDQSDNDSVASDEDLKLSKSKGKAKKPQQ 77
Query 234 MSGKG---------QQQQGQT---VTKKSAAEASKKPRQKRTATKAYNVTQAF 274
S + Q+ G VT++ + +KP K K +
Sbjct 78 RSEEDVISDNDDEQQETSGTQYLDVTEQETKSSKRKPLDKGKPPKKNKTGVVY 130
Lambda K H a alpha
0.318 0.123 0.316 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0376 0.140 1.90 42.6 43.6
Effective search space used: 40990875652
Search has CONVERGED!
Database: uniprot_sprot.fasta
Posted date: Apr 3, 2024 12:05 PM
Number of letters in database: 206,678,396
Number of sequences in database: 571,282
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40