PSIBLAST 2.11.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Stephen F.
Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005)
"Protein database searches using compositionally adjusted
substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: uniprot_sprot.fasta
571,282 sequences; 206,678,396 total letters
Results from round 1
Query= sp|P0DTC7|NS7A_SARS2 ORF7a protein OS=Severe acute respiratory
syndrome coronavirus 2 OX=2697049 GN=7a PE=1 SV=1
Length=121
Score E
Sequences producing significant alignments: (Bits) Value
sp|P0DTC7|NS7A_SARS2 ORF7a protein OS=Severe acute respiratory sy... 248 6e-86
sp|Q3I5J0|NS7A_BCRP3 Protein 7a OS=Bat coronavirus Rp3/2004 OX=34... 221 2e-75
sp|Q3LZX7|NS7A_BCHK3 Protein 7a OS=Bat coronavirus HKU3 OX=442736... 221 5e-75
sp|Q0Q470|NS7A_BC279 Protein 7a OS=Bat coronavirus 279/2005 OX=38... 216 5e-73
sp|P59635|NS7A_SARS ORF7a protein OS=Severe acute respiratory syn... 215 9e-73
sp|A7GQU4|PLSY_BACCN Glycerol-3-phosphate acyltransferase OS=Baci... 30.8 2.2
sp|B7IRQ1|PLSY_BACC2 Glycerol-3-phosphate acyltransferase OS=Baci... 30.4 3.3
sp|Q812Z6|PLSY2_BACCR Glycerol-3-phosphate acyltransferase 2 OS=B... 30.4 3.3
sp|Q81Y92|PLSY3_BACAN Glycerol-3-phosphate acyltransferase 3 OS=B... 30.4 3.4
sp|Q637M1|PLSY2_BACCZ Glycerol-3-phosphate acyltransferase 2 OS=B... 30.4 3.4
sp|P80324|OXDA_RHOTO D-amino-acid oxidase OS=Rhodotorula toruloid... 30.4 3.5
sp|Q6HFJ3|PLSY2_BACHK Glycerol-3-phosphate acyltransferase 2 OS=B... 30.0 3.7
sp|Q733N4|PLSY2_BACC1 Glycerol-3-phosphate acyltransferase 2 OS=B... 30.0 3.9
sp|P9WGP3|SECA2_MYCTU Protein translocase subunit SecA 2 OS=Mycob... 29.3 9.2
sp|P9WGP2|SECA2_MYCTO Protein translocase subunit SecA 2 OS=Mycob... 29.3 9.2
sp|A5U3I8|SECA2_MYCTA Protein translocase subunit SecA 2 OS=Mycob... 29.3 9.2
sp|A1KJN3|SECA2_MYCBP Protein translocase subunit SecA 2 OS=Mycob... 29.3 9.2
sp|P66786|SECA2_MYCBO Protein translocase subunit SecA 2 OS=Mycob... 29.3 9.2
>sp|P0DTC7|NS7A_SARS2 ORF7a protein OS=Severe acute respiratory
syndrome coronavirus 2 OX=2697049 GN=7a PE=1 SV=1
Length=121
Score = 248 bits (634), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 121/121 (100%), Positives = 121/121 (100%), Gaps = 0/121 (0%)
Query 1 MKIILFLALITLATCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFS 60
MKIILFLALITLATCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFS
Sbjct 1 MKIILFLALITLATCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFS 60
Query 61 TQFAFACPDGVKHVYQLRARSVSPKLFIRQEEVQELYSPIFLIVAAIVFITLCFTLKRKT 120
TQFAFACPDGVKHVYQLRARSVSPKLFIRQEEVQELYSPIFLIVAAIVFITLCFTLKRKT
Sbjct 61 TQFAFACPDGVKHVYQLRARSVSPKLFIRQEEVQELYSPIFLIVAAIVFITLCFTLKRKT 120
Query 121 E 121
E
Sbjct 121 E 121
>sp|Q3I5J0|NS7A_BCRP3 Protein 7a OS=Bat coronavirus Rp3/2004 OX=349344
GN=7a PE=3 SV=1
Length=122
Score = 221 bits (564), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 108/122 (89%), Positives = 113/122 (93%), Gaps = 1/122 (1%)
Query 1 MKIILFLALITLATCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFS 60
MKIILFL LI LA+CELYHYQECVRGTTVLLKEPC SGTYEGNSPFHPLADNKFALTC S
Sbjct 1 MKIILFLTLIALASCELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTS 60
Query 61 TQFAFACPDGVKHVYQLRARSVSPKLFIRQEEV-QELYSPIFLIVAAIVFITLCFTLKRK 119
T FAFAC DG +H YQLRARSVSPKLFIRQEEV QELYSP+FLIVAA+VFITLCFT+KRK
Sbjct 61 THFAFACADGTRHTYQLRARSVSPKLFIRQEEVHQELYSPLFLIVAALVFITLCFTIKRK 120
Query 120 TE 121
TE
Sbjct 121 TE 122
>sp|Q3LZX7|NS7A_BCHK3 Protein 7a OS=Bat coronavirus HKU3 OX=442736
GN=7a PE=3 SV=1
Length=122
Score = 221 bits (562), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 108/122 (89%), Positives = 112/122 (92%), Gaps = 1/122 (1%)
Query 1 MKIILFLALITLATCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFS 60
MKIILFL LI LATCELYHYQECVRGTTVLLKEPC SGTYEGNSPFHPLADNKFALTC S
Sbjct 1 MKIILFLTLIALATCELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCSS 60
Query 61 TQFAFACPDGVKHVYQLRARSVSPKLFIRQEEV-QELYSPIFLIVAAIVFITLCFTLKRK 119
T FAFAC DG +H YQLRARSVSPKLFIRQEEV QELYSP+FLIVAA+VFI LCFT+KRK
Sbjct 61 THFAFACADGTRHTYQLRARSVSPKLFIRQEEVYQELYSPLFLIVAALVFIILCFTIKRK 120
Query 120 TE 121
TE
Sbjct 121 TE 122
>sp|Q0Q470|NS7A_BC279 Protein 7a OS=Bat coronavirus 279/2005 OX=389167
GN=7a PE=3 SV=1
Length=122
Score = 216 bits (549), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 105/122 (86%), Positives = 110/122 (90%), Gaps = 1/122 (1%)
Query 1 MKIILFLALITLATCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFS 60
MKIILFL LI LA+ ELYHYQECVRGTTVLLKEPC SGTYEGNSPFHPLADNKFALTC S
Sbjct 1 MKIILFLTLIALASSELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCIS 60
Query 61 TQFAFACPDGVKHVYQLRARSVSPKLFIRQEEV-QELYSPIFLIVAAIVFITLCFTLKRK 119
T FAFAC DG +H YQLRARSVSPKLF RQEEV QELYSP+FLIVAA+VFI LCFT+KRK
Sbjct 61 THFAFACADGTRHTYQLRARSVSPKLFTRQEEVHQELYSPLFLIVAALVFIILCFTIKRK 120
Query 120 TE 121
TE
Sbjct 121 TE 122
>sp|P59635|NS7A_SARS ORF7a protein OS=Severe acute respiratory
syndrome coronavirus OX=694009 GN=7a PE=1 SV=1
Length=122
Score = 215 bits (547), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 104/122 (85%), Positives = 110/122 (90%), Gaps = 1/122 (1%)
Query 1 MKIILFLALITLATCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFS 60
MKIILFL LI +CELYHYQECVRGTTVLLKEPC SGTYEGNSPFHPLADNKFALTC S
Sbjct 1 MKIILFLTLIVFTSCELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTS 60
Query 61 TQFAFACPDGVKHVYQLRARSVSPKLFIRQEEV-QELYSPIFLIVAAIVFITLCFTLKRK 119
T FAFAC DG +H YQLRARSVSPKLFIRQEEV QELYSP+FLIVAA+VF+ LCFT+KRK
Sbjct 61 THFAFACADGTRHTYQLRARSVSPKLFIRQEEVQQELYSPLFLIVAALVFLILCFTIKRK 120
Query 120 TE 121
TE
Sbjct 121 TE 122
>sp|A7GQU4|PLSY_BACCN Glycerol-3-phosphate acyltransferase OS=Bacillus
cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98
/ NVH 391-98) OX=315749 GN=plsY PE=3 SV=1
Length=198
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 28/64 (44%), Gaps = 2/64 (3%)
Query 54 FALTCFSTQFAFACPDGVKHVYQLRARSVSPKLFIRQEEVQELYSPIFLIVAAIVFITLC 113
F+L F A G HVY + AR K V Y+PI + A+VF TL
Sbjct 75 FSLDIHPLLFGLAAVLG--HVYPIFARFRGGKAVATSAGVLLCYAPIIFAILAVVFFTLL 132
Query 114 FTLK 117
FT +
Sbjct 133 FTTR 136
>sp|B7IRQ1|PLSY_BACC2 Glycerol-3-phosphate acyltransferase OS=Bacillus
cereus (strain G9842) OX=405531 GN=plsY PE=3 SV=1
Length=198
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/64 (33%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query 54 FALTCFSTQFAFACPDGVKHVYQLRARSVSPKLFIRQEEVQELYSPIFLIVAAIVFITLC 113
F L F A G HVY + A+ K V YSP+ + A+VF TL
Sbjct 75 FGLDIHPLWFGLAAVLG--HVYPIFAKFRGGKAVATSAGVLLCYSPVVFAILAVVFFTLL 132
Query 114 FTLK 117
FT +
Sbjct 133 FTTR 136
>sp|Q812Z6|PLSY2_BACCR Glycerol-3-phosphate acyltransferase 2
OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 /
JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
OX=226900 GN=plsY2 PE=3 SV=1
Length=198
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/64 (33%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query 54 FALTCFSTQFAFACPDGVKHVYQLRARSVSPKLFIRQEEVQELYSPIFLIVAAIVFITLC 113
F L F A G HVY + A+ K V YSP+ + A+VF TL
Sbjct 75 FGLDIHPLWFGLAAVLG--HVYPIFAKFRGGKAVATSAGVLLCYSPVVFAILAVVFFTLL 132
Query 114 FTLK 117
FT +
Sbjct 133 FTTR 136
>sp|Q81Y92|PLSY3_BACAN Glycerol-3-phosphate acyltransferase 3
OS=Bacillus anthracis OX=1392 GN=plsY3 PE=3 SV=1
Length=198
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/64 (33%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query 54 FALTCFSTQFAFACPDGVKHVYQLRARSVSPKLFIRQEEVQELYSPIFLIVAAIVFITLC 113
F L F A G HVY + A+ K V YSP+ + A+VF TL
Sbjct 75 FGLDIHPLWFGLAAVLG--HVYPIFAKFRGGKAVATSAGVLLCYSPVVFAILAVVFFTLL 132
Query 114 FTLK 117
FT +
Sbjct 133 FTTR 136
>sp|Q637M1|PLSY2_BACCZ Glycerol-3-phosphate acyltransferase 2
OS=Bacillus cereus (strain ZK / E33L) OX=288681 GN=plsY2 PE=3
SV=1
Length=198
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/64 (33%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query 54 FALTCFSTQFAFACPDGVKHVYQLRARSVSPKLFIRQEEVQELYSPIFLIVAAIVFITLC 113
F L F A G HVY + A+ K V YSP+ + A+VF TL
Sbjct 75 FGLDIHPLWFGLAAVLG--HVYPIFAKFRGGKAVATSAGVLLCYSPVVFAILAVVFFTLL 132
Query 114 FTLK 117
FT +
Sbjct 133 FTTR 136
>sp|P80324|OXDA_RHOTO D-amino-acid oxidase OS=Rhodotorula toruloides
OX=5286 GN=DAO1 PE=1 SV=1
Length=368
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 0/27 (0%)
Query 22 ECVRGTTVLLKEPCSSGTYEGNSPFHP 48
E +RG TVL+K PC T + + P P
Sbjct 195 EPIRGQTVLVKSPCKRCTMDSSDPASP 221
>sp|Q6HFJ3|PLSY2_BACHK Glycerol-3-phosphate acyltransferase 2
OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) OX=281309
GN=plsY2 PE=3 SV=1
Length=198
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/64 (33%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query 54 FALTCFSTQFAFACPDGVKHVYQLRARSVSPKLFIRQEEVQELYSPIFLIVAAIVFITLC 113
F L F A G HVY + A+ K V YSP+ + A+VF TL
Sbjct 75 FGLDIHPLWFGLAAVLG--HVYPIFAKFRGGKAVATSAGVLLCYSPVVFAILAVVFFTLL 132
Query 114 FTLK 117
FT +
Sbjct 133 FTTR 136
>sp|Q733N4|PLSY2_BACC1 Glycerol-3-phosphate acyltransferase 2
OS=Bacillus cereus (strain ATCC 10987 / NRS 248) OX=222523 GN=plsY2
PE=3 SV=1
Length=198
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/64 (33%), Positives = 28/64 (44%), Gaps = 2/64 (3%)
Query 54 FALTCFSTQFAFACPDGVKHVYQLRARSVSPKLFIRQEEVQELYSPIFLIVAAIVFITLC 113
FAL F A G HVY + A+ K V YSP+ + A+VF +L
Sbjct 75 FALDIHPLWFGLAAVLG--HVYPIFAKFRGGKAVATSAGVLLCYSPVVFAILAVVFFSLL 132
Query 114 FTLK 117
FT +
Sbjct 133 FTTR 136
>sp|P9WGP3|SECA2_MYCTU Protein translocase subunit SecA 2 OS=Mycobacterium
tuberculosis (strain ATCC 25618 / H37Rv) OX=83332
GN=secA2 PE=1 SV=1
Length=808
Score = 29.3 bits (64), Expect = 9.2, Method: Composition-based stats.
Identities = 15/47 (32%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query 52 NKFALTCFSTQFAFACPDGVKHVYQLRARSVSP-KLFIRQEEVQELY 97
N++A C T A A + ++ YQL + P K IR++E +Y
Sbjct 405 NRYATVCGMTGTALAAGEQLRQFYQLGVSPIPPNKPNIREDEADRVY 451
>sp|P9WGP2|SECA2_MYCTO Protein translocase subunit SecA 2 OS=Mycobacterium
tuberculosis (strain CDC 1551 / Oshkosh) OX=83331
GN=secA2 PE=3 SV=1
Length=808
Score = 29.3 bits (64), Expect = 9.2, Method: Composition-based stats.
Identities = 15/47 (32%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query 52 NKFALTCFSTQFAFACPDGVKHVYQLRARSVSP-KLFIRQEEVQELY 97
N++A C T A A + ++ YQL + P K IR++E +Y
Sbjct 405 NRYATVCGMTGTALAAGEQLRQFYQLGVSPIPPNKPNIREDEADRVY 451
>sp|A5U3I8|SECA2_MYCTA Protein translocase subunit SecA 2 OS=Mycobacterium
tuberculosis (strain ATCC 25177 / H37Ra) OX=419947
GN=secA2 PE=3 SV=1
Length=808
Score = 29.3 bits (64), Expect = 9.2, Method: Composition-based stats.
Identities = 15/47 (32%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query 52 NKFALTCFSTQFAFACPDGVKHVYQLRARSVSP-KLFIRQEEVQELY 97
N++A C T A A + ++ YQL + P K IR++E +Y
Sbjct 405 NRYATVCGMTGTALAAGEQLRQFYQLGVSPIPPNKPNIREDEADRVY 451
>sp|A1KJN3|SECA2_MYCBP Protein translocase subunit SecA 2 OS=Mycobacterium
bovis (strain BCG / Pasteur 1173P2) OX=410289 GN=secA2
PE=3 SV=1
Length=808
Score = 29.3 bits (64), Expect = 9.2, Method: Composition-based stats.
Identities = 15/47 (32%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query 52 NKFALTCFSTQFAFACPDGVKHVYQLRARSVSP-KLFIRQEEVQELY 97
N++A C T A A + ++ YQL + P K IR++E +Y
Sbjct 405 NRYATVCGMTGTALAAGEQLRQFYQLGVSPIPPNKPNIREDEADRVY 451
>sp|P66786|SECA2_MYCBO Protein translocase subunit SecA 2 OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) OX=233413
GN=secA2 PE=3 SV=1
Length=808
Score = 29.3 bits (64), Expect = 9.2, Method: Composition-based stats.
Identities = 15/47 (32%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query 52 NKFALTCFSTQFAFACPDGVKHVYQLRARSVSP-KLFIRQEEVQELY 97
N++A C T A A + ++ YQL + P K IR++E +Y
Sbjct 405 NRYATVCGMTGTALAAGEQLRQFYQLGVSPIPPNKPNIREDEADRVY 451
Lambda K H a alpha
0.329 0.140 0.429 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 5161384140
Results from round 2
Query= sp|P0DTC7|NS7A_SARS2 ORF7a protein OS=Severe acute respiratory
syndrome coronavirus 2 OX=2697049 GN=7a PE=1 SV=1
Length=121
Score E
Sequences producing significant alignments: (Bits) Value
Sequences used in model and found again:
sp|P0DTC7|NS7A_SARS2 ORF7a protein OS=Severe acute respiratory sy... 218 7e-74
sp|Q3I5J0|NS7A_BCRP3 Protein 7a OS=Bat coronavirus Rp3/2004 OX=34... 214 3e-72
sp|Q3LZX7|NS7A_BCHK3 Protein 7a OS=Bat coronavirus HKU3 OX=442736... 211 4e-71
sp|Q0Q470|NS7A_BC279 Protein 7a OS=Bat coronavirus 279/2005 OX=38... 207 1e-69
sp|P59635|NS7A_SARS ORF7a protein OS=Severe acute respiratory syn... 206 2e-69
Sequences not found previously or not previously below threshold:
sp|Q12339|UTP23_YEAST rRNA-processing protein UTP23 OS=Saccharomy... 31.1 2.3
sp|A7GQU4|PLSY_BACCN Glycerol-3-phosphate acyltransferase OS=Baci... 29.9 5.0
sp|P9WGP3|SECA2_MYCTU Protein translocase subunit SecA 2 OS=Mycob... 29.9 5.1
sp|P9WGP2|SECA2_MYCTO Protein translocase subunit SecA 2 OS=Mycob... 29.9 5.1
sp|A5U3I8|SECA2_MYCTA Protein translocase subunit SecA 2 OS=Mycob... 29.9 5.1
sp|A1KJN3|SECA2_MYCBP Protein translocase subunit SecA 2 OS=Mycob... 29.9 5.1
sp|P66786|SECA2_MYCBO Protein translocase subunit SecA 2 OS=Mycob... 29.9 5.1
sp|P80324|OXDA_RHOTO D-amino-acid oxidase OS=Rhodotorula toruloid... 29.9 5.3
>sp|P0DTC7|NS7A_SARS2 ORF7a protein OS=Severe acute respiratory
syndrome coronavirus 2 OX=2697049 GN=7a PE=1 SV=1
Length=121
Score = 218 bits (555), Expect = 7e-74, Method: Composition-based stats.
Identities = 121/121 (100%), Positives = 121/121 (100%), Gaps = 0/121 (0%)
Query 1 MKIILFLALITLATCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFS 60
MKIILFLALITLATCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFS
Sbjct 1 MKIILFLALITLATCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFS 60
Query 61 TQFAFACPDGVKHVYQLRARSVSPKLFIRQEEVQELYSPIFLIVAAIVFITLCFTLKRKT 120
TQFAFACPDGVKHVYQLRARSVSPKLFIRQEEVQELYSPIFLIVAAIVFITLCFTLKRKT
Sbjct 61 TQFAFACPDGVKHVYQLRARSVSPKLFIRQEEVQELYSPIFLIVAAIVFITLCFTLKRKT 120
Query 121 E 121
E
Sbjct 121 E 121
>sp|Q3I5J0|NS7A_BCRP3 Protein 7a OS=Bat coronavirus Rp3/2004 OX=349344
GN=7a PE=3 SV=1
Length=122
Score = 214 bits (544), Expect = 3e-72, Method: Composition-based stats.
Identities = 108/122 (89%), Positives = 113/122 (93%), Gaps = 1/122 (1%)
Query 1 MKIILFLALITLATCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFS 60
MKIILFL LI LA+CELYHYQECVRGTTVLLKEPC SGTYEGNSPFHPLADNKFALTC S
Sbjct 1 MKIILFLTLIALASCELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTS 60
Query 61 TQFAFACPDGVKHVYQLRARSVSPKLFIRQEEV-QELYSPIFLIVAAIVFITLCFTLKRK 119
T FAFAC DG +H YQLRARSVSPKLFIRQEEV QELYSP+FLIVAA+VFITLCFT+KRK
Sbjct 61 THFAFACADGTRHTYQLRARSVSPKLFIRQEEVHQELYSPLFLIVAALVFITLCFTIKRK 120
Query 120 TE 121
TE
Sbjct 121 TE 122
>sp|Q3LZX7|NS7A_BCHK3 Protein 7a OS=Bat coronavirus HKU3 OX=442736
GN=7a PE=3 SV=1
Length=122
Score = 211 bits (537), Expect = 4e-71, Method: Composition-based stats.
Identities = 108/122 (89%), Positives = 112/122 (92%), Gaps = 1/122 (1%)
Query 1 MKIILFLALITLATCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFS 60
MKIILFL LI LATCELYHYQECVRGTTVLLKEPC SGTYEGNSPFHPLADNKFALTC S
Sbjct 1 MKIILFLTLIALATCELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCSS 60
Query 61 TQFAFACPDGVKHVYQLRARSVSPKLFIRQEEV-QELYSPIFLIVAAIVFITLCFTLKRK 119
T FAFAC DG +H YQLRARSVSPKLFIRQEEV QELYSP+FLIVAA+VFI LCFT+KRK
Sbjct 61 THFAFACADGTRHTYQLRARSVSPKLFIRQEEVYQELYSPLFLIVAALVFIILCFTIKRK 120
Query 120 TE 121
TE
Sbjct 121 TE 122
>sp|Q0Q470|NS7A_BC279 Protein 7a OS=Bat coronavirus 279/2005 OX=389167
GN=7a PE=3 SV=1
Length=122
Score = 207 bits (527), Expect = 1e-69, Method: Composition-based stats.
Identities = 105/122 (86%), Positives = 110/122 (90%), Gaps = 1/122 (1%)
Query 1 MKIILFLALITLATCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFS 60
MKIILFL LI LA+ ELYHYQECVRGTTVLLKEPC SGTYEGNSPFHPLADNKFALTC S
Sbjct 1 MKIILFLTLIALASSELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCIS 60
Query 61 TQFAFACPDGVKHVYQLRARSVSPKLFIRQEEV-QELYSPIFLIVAAIVFITLCFTLKRK 119
T FAFAC DG +H YQLRARSVSPKLF RQEEV QELYSP+FLIVAA+VFI LCFT+KRK
Sbjct 61 THFAFACADGTRHTYQLRARSVSPKLFTRQEEVHQELYSPLFLIVAALVFIILCFTIKRK 120
Query 120 TE 121
TE
Sbjct 121 TE 122
>sp|P59635|NS7A_SARS ORF7a protein OS=Severe acute respiratory
syndrome coronavirus OX=694009 GN=7a PE=1 SV=1
Length=122
Score = 206 bits (525), Expect = 2e-69, Method: Composition-based stats.
Identities = 104/122 (85%), Positives = 110/122 (90%), Gaps = 1/122 (1%)
Query 1 MKIILFLALITLATCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFS 60
MKIILFL LI +CELYHYQECVRGTTVLLKEPC SGTYEGNSPFHPLADNKFALTC S
Sbjct 1 MKIILFLTLIVFTSCELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTS 60
Query 61 TQFAFACPDGVKHVYQLRARSVSPKLFIRQEEV-QELYSPIFLIVAAIVFITLCFTLKRK 119
T FAFAC DG +H YQLRARSVSPKLFIRQEEV QELYSP+FLIVAA+VF+ LCFT+KRK
Sbjct 61 THFAFACADGTRHTYQLRARSVSPKLFIRQEEVQQELYSPLFLIVAALVFLILCFTIKRK 120
Query 120 TE 121
TE
Sbjct 121 TE 122
>sp|Q12339|UTP23_YEAST rRNA-processing protein UTP23 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UTP23
PE=1 SV=1
Length=254
Score = 31.1 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 28/61 (46%), Gaps = 7/61 (11%)
Query 37 SGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKHVYQLRARSVSPKLFIRQEEVQEL 96
S T++ P+ L DN+ L C ++ F P G+K Q K+ I Q +Q L
Sbjct 17 SHTFKFREPYQVLVDNQLVLECNNSNFNL--PSGLKRTLQ-----ADVKVMITQCCIQAL 69
Query 97 Y 97
Y
Sbjct 70 Y 70
>sp|A7GQU4|PLSY_BACCN Glycerol-3-phosphate acyltransferase OS=Bacillus
cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98
/ NVH 391-98) OX=315749 GN=plsY PE=3 SV=1
Length=198
Score = 29.9 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 28/64 (44%), Gaps = 2/64 (3%)
Query 54 FALTCFSTQFAFACPDGVKHVYQLRARSVSPKLFIRQEEVQELYSPIFLIVAAIVFITLC 113
F+L F A G HVY + AR K V Y+PI + A+VF TL
Sbjct 75 FSLDIHPLLFGLAAVLG--HVYPIFARFRGGKAVATSAGVLLCYAPIIFAILAVVFFTLL 132
Query 114 FTLK 117
FT +
Sbjct 133 FTTR 136
>sp|P9WGP3|SECA2_MYCTU Protein translocase subunit SecA 2 OS=Mycobacterium
tuberculosis (strain ATCC 25618 / H37Rv) OX=83332
GN=secA2 PE=1 SV=1
Length=808
Score = 29.9 bits (66), Expect = 5.1, Method: Composition-based stats.
Identities = 15/47 (32%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query 52 NKFALTCFSTQFAFACPDGVKHVYQLRARSVSP-KLFIRQEEVQELY 97
N++A C T A A + ++ YQL + P K IR++E +Y
Sbjct 405 NRYATVCGMTGTALAAGEQLRQFYQLGVSPIPPNKPNIREDEADRVY 451
>sp|P9WGP2|SECA2_MYCTO Protein translocase subunit SecA 2 OS=Mycobacterium
tuberculosis (strain CDC 1551 / Oshkosh) OX=83331
GN=secA2 PE=3 SV=1
Length=808
Score = 29.9 bits (66), Expect = 5.1, Method: Composition-based stats.
Identities = 15/47 (32%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query 52 NKFALTCFSTQFAFACPDGVKHVYQLRARSVSP-KLFIRQEEVQELY 97
N++A C T A A + ++ YQL + P K IR++E +Y
Sbjct 405 NRYATVCGMTGTALAAGEQLRQFYQLGVSPIPPNKPNIREDEADRVY 451
>sp|A5U3I8|SECA2_MYCTA Protein translocase subunit SecA 2 OS=Mycobacterium
tuberculosis (strain ATCC 25177 / H37Ra) OX=419947
GN=secA2 PE=3 SV=1
Length=808
Score = 29.9 bits (66), Expect = 5.1, Method: Composition-based stats.
Identities = 15/47 (32%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query 52 NKFALTCFSTQFAFACPDGVKHVYQLRARSVSP-KLFIRQEEVQELY 97
N++A C T A A + ++ YQL + P K IR++E +Y
Sbjct 405 NRYATVCGMTGTALAAGEQLRQFYQLGVSPIPPNKPNIREDEADRVY 451
>sp|A1KJN3|SECA2_MYCBP Protein translocase subunit SecA 2 OS=Mycobacterium
bovis (strain BCG / Pasteur 1173P2) OX=410289 GN=secA2
PE=3 SV=1
Length=808
Score = 29.9 bits (66), Expect = 5.1, Method: Composition-based stats.
Identities = 15/47 (32%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query 52 NKFALTCFSTQFAFACPDGVKHVYQLRARSVSP-KLFIRQEEVQELY 97
N++A C T A A + ++ YQL + P K IR++E +Y
Sbjct 405 NRYATVCGMTGTALAAGEQLRQFYQLGVSPIPPNKPNIREDEADRVY 451
>sp|P66786|SECA2_MYCBO Protein translocase subunit SecA 2 OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) OX=233413
GN=secA2 PE=3 SV=1
Length=808
Score = 29.9 bits (66), Expect = 5.1, Method: Composition-based stats.
Identities = 15/47 (32%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query 52 NKFALTCFSTQFAFACPDGVKHVYQLRARSVSP-KLFIRQEEVQELY 97
N++A C T A A + ++ YQL + P K IR++E +Y
Sbjct 405 NRYATVCGMTGTALAAGEQLRQFYQLGVSPIPPNKPNIREDEADRVY 451
>sp|P80324|OXDA_RHOTO D-amino-acid oxidase OS=Rhodotorula toruloides
OX=5286 GN=DAO1 PE=1 SV=1
Length=368
Score = 29.9 bits (66), Expect = 5.3, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 0/27 (0%)
Query 22 ECVRGTTVLLKEPCSSGTYEGNSPFHP 48
E +RG TVL+K PC T + + P P
Sbjct 195 EPIRGQTVLVKSPCKRCTMDSSDPASP 221
Lambda K H a alpha
0.315 0.144 0.470 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0440 0.140 1.90 42.6 43.6
Effective search space used: 5161384140
Search has CONVERGED!
Database: uniprot_sprot.fasta
Posted date: Apr 3, 2024 12:05 PM
Number of letters in database: 206,678,396
Number of sequences in database: 571,282
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40