PSIBLAST 2.11.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Stephen F.
Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005)
"Protein database searches using compositionally adjusted
substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: uniprot_sprot.fasta
571,282 sequences; 206,678,396 total letters
Results from round 1
Query= sp|P0DTC3|AP3A_SARS2 ORF3a protein OS=Severe acute respiratory
syndrome coronavirus 2 OX=2697049 GN=3a PE=1 SV=1
Length=275
Score E
Sequences producing significant alignments: (Bits) Value
sp|P0DTC3|AP3A_SARS2 ORF3a protein OS=Severe acute respiratory sy... 568 0.0
sp|Q0Q474|AP3A_BC279 Protein 3 OS=Bat coronavirus 279/2005 OX=389... 440 7e-157
sp|Q3I5J4|AP3A_BCRP3 Protein 3 OS=Bat coronavirus Rp3/2004 OX=349... 439 3e-156
sp|P59632|AP3A_SARS ORF3a protein OS=Severe acute respiratory syn... 426 4e-151
sp|Q3LZX0|AP3A_BCHK3 Protein 3 OS=Bat coronavirus HKU3 OX=442736 ... 426 5e-151
sp|P03127|VE6_CRPVK Protein E6 OS=Cottontail rabbit papillomaviru... 34.3 1.1
sp|Q7ZWB7|BBS5_DANRE Bardet-Biedl syndrome 5 protein homolog OS=D... 31.6 8.2
>sp|P0DTC3|AP3A_SARS2 ORF3a protein OS=Severe acute respiratory
syndrome coronavirus 2 OX=2697049 GN=3a PE=1 SV=1
Length=275
Score = 568 bits (1464), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 275/275 (100%), Positives = 275/275 (100%), Gaps = 0/275 (0%)
Query 1 MDLFMRIFTIGTVTLKQGEIKDATPSDFVRATATIPIQASLPFGWLIVGVALLAVFQSAS 60
MDLFMRIFTIGTVTLKQGEIKDATPSDFVRATATIPIQASLPFGWLIVGVALLAVFQSAS
Sbjct 1 MDLFMRIFTIGTVTLKQGEIKDATPSDFVRATATIPIQASLPFGWLIVGVALLAVFQSAS 60
Query 61 KIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAAGLEAPFLYLYALVYFLQSINF 120
KIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAAGLEAPFLYLYALVYFLQSINF
Sbjct 61 KIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAAGLEAPFLYLYALVYFLQSINF 120
Query 121 VRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIPYNSVTSSIVITSGDGTTSPIS 180
VRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIPYNSVTSSIVITSGDGTTSPIS
Sbjct 121 VRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIPYNSVTSSIVITSGDGTTSPIS 180
Query 181 EHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQLSTDTGVEHVTFFIYNKIVDEP 240
EHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQLSTDTGVEHVTFFIYNKIVDEP
Sbjct 181 EHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQLSTDTGVEHVTFFIYNKIVDEP 240
Query 241 EEHVQIHTIDGSSGVVNPVMEPIYDEPTTTTSVPL 275
EEHVQIHTIDGSSGVVNPVMEPIYDEPTTTTSVPL
Sbjct 241 EEHVQIHTIDGSSGVVNPVMEPIYDEPTTTTSVPL 275
>sp|Q0Q474|AP3A_BC279 Protein 3 OS=Bat coronavirus 279/2005 OX=389167
GN=3 PE=3 SV=1
Length=274
Score = 440 bits (1132), Expect = 7e-157, Method: Compositional matrix adjust.
Identities = 205/275 (75%), Positives = 239/275 (87%), Gaps = 1/275 (0%)
Query 1 MDLFMRIFTIGTVTLKQGEIKDATPSDFVRATATIPIQASLPFGWLIVGVALLAVFQSAS 60
MDLFM IFT+G +T + ++++A+P+ V ATATIP+QASLPFGWL+VGVALLAVFQSAS
Sbjct 1 MDLFMSIFTLGAITRQPAKVENASPASTVHATATIPLQASLPFGWLVVGVALLAVFQSAS 60
Query 61 KIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAAGLEAPFLYLYALVYFLQSINF 120
K+I L KRWQLAL KG+ FVCNLLLLFVT+YSHLLL+AAG+EA FLY+YAL+Y LQ ++F
Sbjct 61 KVIALHKRWQLALYKGIQFVCNLLLLFVTIYSHLLLLAAGMEAQFLYIYALIYILQIVSF 120
Query 121 VRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIPYNSVTSSIVITSGDGTTSPIS 180
R IMR WLCWKCRSKNPLLYDANYF+CWHTNC+DYCIPYNS+T +IV+TSGDGTT P
Sbjct 121 CRFIMRCWLCWKCRSKNPLLYDANYFVCWHTNCFDYCIPYNSITDTIVLTSGDGTTQPKL 180
Query 181 EHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQLSTDTGVEHVTFFIYNKIVDEP 240
+ DYQIGGY+E W SGVKD VV+H YFT YYQL STQLSTDTG E+ TFFIY+K+V +
Sbjct 181 KEDYQIGGYSEDWHSGVKDYVVIHGYFTEIYYQLESTQLSTDTGAENATFFIYSKLVKD- 239
Query 241 EEHVQIHTIDGSSGVVNPVMEPIYDEPTTTTSVPL 275
+HVQIHTIDGSSGVVNP M+PIYDEPTTTTSVPL
Sbjct 240 VDHVQIHTIDGSSGVVNPAMDPIYDEPTTTTSVPL 274
>sp|Q3I5J4|AP3A_BCRP3 Protein 3 OS=Bat coronavirus Rp3/2004 OX=349344
GN=3 PE=3 SV=1
Length=274
Score = 439 bits (1128), Expect = 3e-156, Method: Compositional matrix adjust.
Identities = 205/275 (75%), Positives = 238/275 (87%), Gaps = 1/275 (0%)
Query 1 MDLFMRIFTIGTVTLKQGEIKDATPSDFVRATATIPIQASLPFGWLIVGVALLAVFQSAS 60
MDLFM IFT+G +T + +I++A+P+ V ATATIP+QASLPFGWL+VGVALLAVFQSAS
Sbjct 1 MDLFMSIFTLGAITRQPAKIENASPASTVHATATIPLQASLPFGWLVVGVALLAVFQSAS 60
Query 61 KIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAAGLEAPFLYLYALVYFLQSINF 120
K+I L KRWQLAL KG+ VCNLLLLFVT+YSHLLL+AAG+EA FLY+YAL+Y LQ ++F
Sbjct 61 KVIALHKRWQLALHKGIQLVCNLLLLFVTIYSHLLLLAAGMEAQFLYIYALIYILQIVSF 120
Query 121 VRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIPYNSVTSSIVITSGDGTTSPIS 180
R IMR WLCWKCRSKNPLLYDANYF+CWHTNC+DYCIPYNS+T +IV+TSGDGTT P
Sbjct 121 CRFIMRCWLCWKCRSKNPLLYDANYFVCWHTNCFDYCIPYNSITDTIVLTSGDGTTQPKL 180
Query 181 EHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQLSTDTGVEHVTFFIYNKIVDEP 240
+ DYQIGGY+E W SGVKD VV+H YFT YYQL STQLSTDTG E+ TFFIY+K+V +
Sbjct 181 KEDYQIGGYSEDWHSGVKDYVVIHGYFTEVYYQLESTQLSTDTGAENATFFIYSKLVKD- 239
Query 241 EEHVQIHTIDGSSGVVNPVMEPIYDEPTTTTSVPL 275
+HVQIHTIDGSSGVVNP M+PIYDEPTTTTSVPL
Sbjct 240 VDHVQIHTIDGSSGVVNPAMDPIYDEPTTTTSVPL 274
>sp|P59632|AP3A_SARS ORF3a protein OS=Severe acute respiratory
syndrome coronavirus OX=694009 GN=3a PE=1 SV=1
Length=274
Score = 426 bits (1095), Expect = 4e-151, Method: Compositional matrix adjust.
Identities = 200/275 (73%), Positives = 235/275 (85%), Gaps = 1/275 (0%)
Query 1 MDLFMRIFTIGTVTLKQGEIKDATPSDFVRATATIPIQASLPFGWLIVGVALLAVFQSAS 60
MDLFMR FT+G++T + +I +A+P+ V ATATIP+QASLPFGWL++GVA LAVFQSA+
Sbjct 1 MDLFMRFFTLGSITAQPVKIDNASPASTVHATATIPLQASLPFGWLVIGVAFLAVFQSAT 60
Query 61 KIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAAGLEAPFLYLYALVYFLQSINF 120
KII L KRWQLAL KG F+CNLLLLFVT+YSHLLLVAAG+EA FLYLYAL+YFLQ IN
Sbjct 61 KIIALNKRWQLALYKGFQFICNLLLLFVTIYSHLLLVAAGMEAQFLYLYALIYFLQCINA 120
Query 121 VRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIPYNSVTSSIVITSGDGTTSPIS 180
RIIMR WLCWKC+SKNPLLYDANYF+CWHT+ YDYCIPYNSVT +IV+T GDG ++P
Sbjct 121 CRIIMRCWLCWKCKSKNPLLYDANYFVCWHTHNYDYCIPYNSVTDTIVVTEGDGISTPKL 180
Query 181 EHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQLSTDTGVEHVTFFIYNKIVDEP 240
+ DYQIGGY+E SGVKD VV+H YFT YYQL STQ++TDTG+E+ TFFI+NK+V +P
Sbjct 181 KEDYQIGGYSEDRHSGVKDYVVVHGYFTEVYYQLESTQITTDTGIENATFFIFNKLVKDP 240
Query 241 EEHVQIHTIDGSSGVVNPVMEPIYDEPTTTTSVPL 275
+VQIHTIDGSSGV NP M+PIYDEPTTTTSVPL
Sbjct 241 -PNVQIHTIDGSSGVANPAMDPIYDEPTTTTSVPL 274
>sp|Q3LZX0|AP3A_BCHK3 Protein 3 OS=Bat coronavirus HKU3 OX=442736
GN=3 PE=3 SV=1
Length=274
Score = 426 bits (1094), Expect = 5e-151, Method: Compositional matrix adjust.
Identities = 201/275 (73%), Positives = 233/275 (85%), Gaps = 1/275 (0%)
Query 1 MDLFMRIFTIGTVTLKQGEIKDATPSDFVRATATIPIQASLPFGWLIVGVALLAVFQSAS 60
MDLFM IFT+G +T +I++A+P+ V ATATIP+QA+ PFGWLIVGVALLAVFQSAS
Sbjct 1 MDLFMSIFTLGAITRNPAKIENASPASTVHATATIPLQATFPFGWLIVGVALLAVFQSAS 60
Query 61 KIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAAGLEAPFLYLYALVYFLQSINF 120
K+I L +RWQLAL KGV VCN+LLLFVT+YSHLLL+AA +EA FLY+YAL+Y LQ ++F
Sbjct 61 KVIALHRRWQLALYKGVQLVCNMLLLFVTIYSHLLLLAACMEAQFLYIYALIYILQIVSF 120
Query 121 VRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIPYNSVTSSIVITSGDGTTSPIS 180
R IMR WLCWKCRSKNPLLYDANYF+CWHTN YDYCIPYNSVT ++VITSGDGT P
Sbjct 121 CRFIMRCWLCWKCRSKNPLLYDANYFVCWHTNNYDYCIPYNSVTDTVVITSGDGTNQPKL 180
Query 181 EHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQLSTDTGVEHVTFFIYNKIVDEP 240
+ DYQIGGY+E W SGVKD VV++ YFT YYQL STQLSTDTG E+ TFFIY+K+V +
Sbjct 181 KEDYQIGGYSEDWHSGVKDYVVIYGYFTEVYYQLESTQLSTDTGAENATFFIYSKLVKD- 239
Query 241 EEHVQIHTIDGSSGVVNPVMEPIYDEPTTTTSVPL 275
+HVQIHTIDGSSGVVNP M+PIYDEPTTTTSVPL
Sbjct 240 VDHVQIHTIDGSSGVVNPAMDPIYDEPTTTTSVPL 274
>sp|P03127|VE6_CRPVK Protein E6 OS=Cottontail rabbit papillomavirus
(strain Kansas) OX=31553 GN=E6 PE=3 SV=1
Length=273
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/67 (33%), Positives = 27/67 (40%), Gaps = 0/67 (0%)
Query 40 SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAA 99
LPFG + G L A + K L W G C +L + +Y HL L A
Sbjct 22 DLPFGCIFCGKLLGAAEKQLFKCTGLCIVWHKGWPYGTCRDCTVLSCALDLYCHLALTAP 81
Query 100 GLEAPFL 106
LEA L
Sbjct 82 ALEAEAL 88
>sp|Q7ZWB7|BBS5_DANRE Bardet-Biedl syndrome 5 protein homolog
OS=Danio rerio OX=7955 GN=bbs5 PE=2 SV=1
Length=342
Score = 31.6 bits (70), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 30/138 (22%), Positives = 54/138 (39%), Gaps = 18/138 (13%)
Query 144 NYFLCWHTN---CYDYCIPYNSVTSSIVITSGDGTTSPISEHDYQIGGYT--------EK 192
N + WH N ++ IPY + SI I + + E Q GGY +K
Sbjct 185 NVRIVWHANMNESFNVSIPYLQI-RSIRIRDSKFGLALVIESSQQTGGYVLGFKIDPMDK 243
Query 193 WESGVKDCVVLHSYFTSDYYQLYSTQLSTDTGVEHVTFFIYNKIVD----EPEEHVQIHT 248
+ VK+ LH ++++ ++ + + + + + D EP+EH T
Sbjct 244 LQDAVKEINSLHKVYSAN--PIFGVEYEMEEKPQPLEELTVEQPPDDVEIEPDEHTDAFT 301
Query 249 IDGSSGVVNPVMEPIYDE 266
+ G EP++ E
Sbjct 302 AYFADGNKQHDREPVFSE 319
Lambda K H a alpha
0.324 0.138 0.435 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 22325139756
Results from round 2
Query= sp|P0DTC3|AP3A_SARS2 ORF3a protein OS=Severe acute respiratory
syndrome coronavirus 2 OX=2697049 GN=3a PE=1 SV=1
Length=275
Score E
Sequences producing significant alignments: (Bits) Value
Sequences used in model and found again:
sp|Q0Q474|AP3A_BC279 Protein 3 OS=Bat coronavirus 279/2005 OX=389... 496 4e-179
sp|Q3I5J4|AP3A_BCRP3 Protein 3 OS=Bat coronavirus Rp3/2004 OX=349... 495 1e-178
sp|Q3LZX0|AP3A_BCHK3 Protein 3 OS=Bat coronavirus HKU3 OX=442736 ... 491 4e-177
sp|P59632|AP3A_SARS ORF3a protein OS=Severe acute respiratory syn... 489 5e-176
sp|P0DTC3|AP3A_SARS2 ORF3a protein OS=Severe acute respiratory sy... 472 1e-169
Sequences not found previously or not previously below threshold:
>sp|Q0Q474|AP3A_BC279 Protein 3 OS=Bat coronavirus 279/2005 OX=389167
GN=3 PE=3 SV=1
Length=274
Score = 496 bits (1278), Expect = 4e-179, Method: Composition-based stats.
Identities = 205/275 (75%), Positives = 239/275 (87%), Gaps = 1/275 (0%)
Query 1 MDLFMRIFTIGTVTLKQGEIKDATPSDFVRATATIPIQASLPFGWLIVGVALLAVFQSAS 60
MDLFM IFT+G +T + ++++A+P+ V ATATIP+QASLPFGWL+VGVALLAVFQSAS
Sbjct 1 MDLFMSIFTLGAITRQPAKVENASPASTVHATATIPLQASLPFGWLVVGVALLAVFQSAS 60
Query 61 KIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAAGLEAPFLYLYALVYFLQSINF 120
K+I L KRWQLAL KG+ FVCNLLLLFVT+YSHLLL+AAG+EA FLY+YAL+Y LQ ++F
Sbjct 61 KVIALHKRWQLALYKGIQFVCNLLLLFVTIYSHLLLLAAGMEAQFLYIYALIYILQIVSF 120
Query 121 VRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIPYNSVTSSIVITSGDGTTSPIS 180
R IMR WLCWKCRSKNPLLYDANYF+CWHTNC+DYCIPYNS+T +IV+TSGDGTT P
Sbjct 121 CRFIMRCWLCWKCRSKNPLLYDANYFVCWHTNCFDYCIPYNSITDTIVLTSGDGTTQPKL 180
Query 181 EHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQLSTDTGVEHVTFFIYNKIVDEP 240
+ DYQIGGY+E W SGVKD VV+H YFT YYQL STQLSTDTG E+ TFFIY+K+V +
Sbjct 181 KEDYQIGGYSEDWHSGVKDYVVIHGYFTEIYYQLESTQLSTDTGAENATFFIYSKLVKD- 239
Query 241 EEHVQIHTIDGSSGVVNPVMEPIYDEPTTTTSVPL 275
+HVQIHTIDGSSGVVNP M+PIYDEPTTTTSVPL
Sbjct 240 VDHVQIHTIDGSSGVVNPAMDPIYDEPTTTTSVPL 274
>sp|Q3I5J4|AP3A_BCRP3 Protein 3 OS=Bat coronavirus Rp3/2004 OX=349344
GN=3 PE=3 SV=1
Length=274
Score = 495 bits (1275), Expect = 1e-178, Method: Composition-based stats.
Identities = 205/275 (75%), Positives = 238/275 (87%), Gaps = 1/275 (0%)
Query 1 MDLFMRIFTIGTVTLKQGEIKDATPSDFVRATATIPIQASLPFGWLIVGVALLAVFQSAS 60
MDLFM IFT+G +T + +I++A+P+ V ATATIP+QASLPFGWL+VGVALLAVFQSAS
Sbjct 1 MDLFMSIFTLGAITRQPAKIENASPASTVHATATIPLQASLPFGWLVVGVALLAVFQSAS 60
Query 61 KIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAAGLEAPFLYLYALVYFLQSINF 120
K+I L KRWQLAL KG+ VCNLLLLFVT+YSHLLL+AAG+EA FLY+YAL+Y LQ ++F
Sbjct 61 KVIALHKRWQLALHKGIQLVCNLLLLFVTIYSHLLLLAAGMEAQFLYIYALIYILQIVSF 120
Query 121 VRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIPYNSVTSSIVITSGDGTTSPIS 180
R IMR WLCWKCRSKNPLLYDANYF+CWHTNC+DYCIPYNS+T +IV+TSGDGTT P
Sbjct 121 CRFIMRCWLCWKCRSKNPLLYDANYFVCWHTNCFDYCIPYNSITDTIVLTSGDGTTQPKL 180
Query 181 EHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQLSTDTGVEHVTFFIYNKIVDEP 240
+ DYQIGGY+E W SGVKD VV+H YFT YYQL STQLSTDTG E+ TFFIY+K+V +
Sbjct 181 KEDYQIGGYSEDWHSGVKDYVVIHGYFTEVYYQLESTQLSTDTGAENATFFIYSKLVKD- 239
Query 241 EEHVQIHTIDGSSGVVNPVMEPIYDEPTTTTSVPL 275
+HVQIHTIDGSSGVVNP M+PIYDEPTTTTSVPL
Sbjct 240 VDHVQIHTIDGSSGVVNPAMDPIYDEPTTTTSVPL 274
>sp|Q3LZX0|AP3A_BCHK3 Protein 3 OS=Bat coronavirus HKU3 OX=442736
GN=3 PE=3 SV=1
Length=274
Score = 491 bits (1265), Expect = 4e-177, Method: Composition-based stats.
Identities = 201/275 (73%), Positives = 233/275 (85%), Gaps = 1/275 (0%)
Query 1 MDLFMRIFTIGTVTLKQGEIKDATPSDFVRATATIPIQASLPFGWLIVGVALLAVFQSAS 60
MDLFM IFT+G +T +I++A+P+ V ATATIP+QA+ PFGWLIVGVALLAVFQSAS
Sbjct 1 MDLFMSIFTLGAITRNPAKIENASPASTVHATATIPLQATFPFGWLIVGVALLAVFQSAS 60
Query 61 KIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAAGLEAPFLYLYALVYFLQSINF 120
K+I L +RWQLAL KGV VCN+LLLFVT+YSHLLL+AA +EA FLY+YAL+Y LQ ++F
Sbjct 61 KVIALHRRWQLALYKGVQLVCNMLLLFVTIYSHLLLLAACMEAQFLYIYALIYILQIVSF 120
Query 121 VRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIPYNSVTSSIVITSGDGTTSPIS 180
R IMR WLCWKCRSKNPLLYDANYF+CWHTN YDYCIPYNSVT ++VITSGDGT P
Sbjct 121 CRFIMRCWLCWKCRSKNPLLYDANYFVCWHTNNYDYCIPYNSVTDTVVITSGDGTNQPKL 180
Query 181 EHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQLSTDTGVEHVTFFIYNKIVDEP 240
+ DYQIGGY+E W SGVKD VV++ YFT YYQL STQLSTDTG E+ TFFIY+K+V +
Sbjct 181 KEDYQIGGYSEDWHSGVKDYVVIYGYFTEVYYQLESTQLSTDTGAENATFFIYSKLVKD- 239
Query 241 EEHVQIHTIDGSSGVVNPVMEPIYDEPTTTTSVPL 275
+HVQIHTIDGSSGVVNP M+PIYDEPTTTTSVPL
Sbjct 240 VDHVQIHTIDGSSGVVNPAMDPIYDEPTTTTSVPL 274
>sp|P59632|AP3A_SARS ORF3a protein OS=Severe acute respiratory
syndrome coronavirus OX=694009 GN=3a PE=1 SV=1
Length=274
Score = 489 bits (1258), Expect = 5e-176, Method: Composition-based stats.
Identities = 200/275 (73%), Positives = 235/275 (85%), Gaps = 1/275 (0%)
Query 1 MDLFMRIFTIGTVTLKQGEIKDATPSDFVRATATIPIQASLPFGWLIVGVALLAVFQSAS 60
MDLFMR FT+G++T + +I +A+P+ V ATATIP+QASLPFGWL++GVA LAVFQSA+
Sbjct 1 MDLFMRFFTLGSITAQPVKIDNASPASTVHATATIPLQASLPFGWLVIGVAFLAVFQSAT 60
Query 61 KIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAAGLEAPFLYLYALVYFLQSINF 120
KII L KRWQLAL KG F+CNLLLLFVT+YSHLLLVAAG+EA FLYLYAL+YFLQ IN
Sbjct 61 KIIALNKRWQLALYKGFQFICNLLLLFVTIYSHLLLVAAGMEAQFLYLYALIYFLQCINA 120
Query 121 VRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIPYNSVTSSIVITSGDGTTSPIS 180
RIIMR WLCWKC+SKNPLLYDANYF+CWHT+ YDYCIPYNSVT +IV+T GDG ++P
Sbjct 121 CRIIMRCWLCWKCKSKNPLLYDANYFVCWHTHNYDYCIPYNSVTDTIVVTEGDGISTPKL 180
Query 181 EHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQLSTDTGVEHVTFFIYNKIVDEP 240
+ DYQIGGY+E SGVKD VV+H YFT YYQL STQ++TDTG+E+ TFFI+NK+V +P
Sbjct 181 KEDYQIGGYSEDRHSGVKDYVVVHGYFTEVYYQLESTQITTDTGIENATFFIFNKLVKDP 240
Query 241 EEHVQIHTIDGSSGVVNPVMEPIYDEPTTTTSVPL 275
+VQIHTIDGSSGV NP M+PIYDEPTTTTSVPL
Sbjct 241 -PNVQIHTIDGSSGVANPAMDPIYDEPTTTTSVPL 274
>sp|P0DTC3|AP3A_SARS2 ORF3a protein OS=Severe acute respiratory
syndrome coronavirus 2 OX=2697049 GN=3a PE=1 SV=1
Length=275
Score = 472 bits (1216), Expect = 1e-169, Method: Composition-based stats.
Identities = 275/275 (100%), Positives = 275/275 (100%), Gaps = 0/275 (0%)
Query 1 MDLFMRIFTIGTVTLKQGEIKDATPSDFVRATATIPIQASLPFGWLIVGVALLAVFQSAS 60
MDLFMRIFTIGTVTLKQGEIKDATPSDFVRATATIPIQASLPFGWLIVGVALLAVFQSAS
Sbjct 1 MDLFMRIFTIGTVTLKQGEIKDATPSDFVRATATIPIQASLPFGWLIVGVALLAVFQSAS 60
Query 61 KIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAAGLEAPFLYLYALVYFLQSINF 120
KIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAAGLEAPFLYLYALVYFLQSINF
Sbjct 61 KIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAAGLEAPFLYLYALVYFLQSINF 120
Query 121 VRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIPYNSVTSSIVITSGDGTTSPIS 180
VRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIPYNSVTSSIVITSGDGTTSPIS
Sbjct 121 VRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIPYNSVTSSIVITSGDGTTSPIS 180
Query 181 EHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQLSTDTGVEHVTFFIYNKIVDEP 240
EHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQLSTDTGVEHVTFFIYNKIVDEP
Sbjct 181 EHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQLSTDTGVEHVTFFIYNKIVDEP 240
Query 241 EEHVQIHTIDGSSGVVNPVMEPIYDEPTTTTSVPL 275
EEHVQIHTIDGSSGVVNPVMEPIYDEPTTTTSVPL
Sbjct 241 EEHVQIHTIDGSSGVVNPVMEPIYDEPTTTTSVPL 275
Lambda K H a alpha
0.319 0.142 0.459 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0436 0.140 1.90 42.6 43.6
Effective search space used: 22325139756
Search has CONVERGED!
Database: uniprot_sprot.fasta
Posted date: Apr 3, 2024 12:05 PM
Number of letters in database: 206,678,396
Number of sequences in database: 571,282
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40