PSIBLAST 2.11.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Stephen F.
Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005)
"Protein database searches using compositionally adjusted
substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: uniprot_sprot.fasta
           570,830 sequences; 206,533,160 total letters

Results from round 1


Query= sp|P0DTC2|SPIKE_SARS2 Spike glycoprotein OS=Severe acute respiratory
syndrome coronavirus 2 OX=2697049 GN=S PE=1 SV=1

Length=1273
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

sp|P0DTC2|SPIKE_SARS2 Spike glycoprotein OS=Severe acute respirat...  2637    0.0   
sp|P59594|SPIKE_SARS Spike glycoprotein OS=Severe acute respirato...  2039    0.0   
sp|Q3LZX1|SPIKE_BCHK3 Spike glycoprotein OS=Bat coronavirus HKU3 ...  2001    0.0   
sp|Q3I5J5|SPIKE_BCRP3 Spike glycoprotein OS=Bat coronavirus Rp3/2...  1986    0.0   
sp|Q0Q475|SPIKE_BC279 Spike glycoprotein OS=Bat coronavirus 279/2...  1974    0.0   
sp|A3EXG6|SPIKE_BCHK9 Spike glycoprotein OS=Bat coronavirus HKU9 ...  614     0.0   
sp|A3EXD0|SPIKE_BCHK5 Spike glycoprotein OS=Bat coronavirus HKU5 ...  600     0.0   
sp|Q0Q4F2|SPIKE_BC133 Spike glycoprotein OS=Bat coronavirus 133/2...  571     5e-180
sp|K9N5Q8|SPIKE_MERS1 Spike glycoprotein OS=Middle East respirato...  554     1e-173
sp|P11225|SPIKE_CVMJH Spike glycoprotein OS=Murine coronavirus (s...  526     3e-164
sp|A3EX94|SPIKE_BCHK4 Spike glycoprotein OS=Bat coronavirus HKU4 ...  499     6e-153
sp|P25192|SPIKE_CVBLY Spike glycoprotein OS=Bovine coronavirus (s...  485     6e-148
sp|Q9QAQ8|SPIKE_CVBOK Spike glycoprotein OS=Bovine coronavirus (s...  485     6e-148
sp|Q91A26|SPIKE_CVBEN Spike glycoprotein OS=Bovine coronavirus (s...  484     1e-147
sp|Q8V436|SPIKE_CVBLU Spike glycoprotein OS=Bovine coronavirus (s...  484     1e-147
sp|Q9QAR5|SPIKE_CVBLS Spike glycoprotein OS=Bovine coronavirus (s...  484     2e-147
sp|P25194|SPIKE_CVBV Spike glycoprotein OS=Bovine coronavirus (st...  481     2e-146
sp|P25191|SPIKE_CVBL9 Spike glycoprotein OS=Bovine coronavirus (s...  479     2e-145
sp|P15777|SPIKE_CVBM Spike glycoprotein OS=Bovine coronavirus (st...  478     5e-145
sp|P25190|SPIKE_CVBF Spike glycoprotein OS=Bovine coronavirus (st...  477     5e-145
sp|P25193|SPIKE_CVBQ Spike glycoprotein OS=Bovine coronavirus (st...  474     1e-143
sp|Q0ZME7|SPIKE_CVHN5 Spike glycoprotein OS=Human coronavirus HKU...  467     3e-141
sp|Q14EB0|SPIKE_CVHN2 Spike glycoprotein OS=Human coronavirus HKU...  466     9e-141
sp|P36334|SPIKE_CVHOC Spike glycoprotein OS=Human coronavirus OC4...  464     2e-140
sp|P11224|SPIKE_CVMA5 Spike glycoprotein OS=Murine coronavirus (s...  459     9e-139
sp|Q8JSP8|SPIKE_CVPIA Spike glycoprotein OS=Porcine hemagglutinat...  459     2e-138
sp|Q8BB25|SPIKE_CVP67 Spike glycoprotein OS=Porcine hemagglutinat...  459     2e-138
sp|Q02385|SPIKE_CVMJC Spike glycoprotein OS=Murine coronavirus (s...  459     4e-138
sp|P22432|SPIKE_CVM4 Spike glycoprotein OS=Murine coronavirus (st...  459     5e-138
sp|Q9IKD1|SPIKE_CVRSD Spike glycoprotein OS=Rat coronavirus (stra...  455     6e-137
sp|Q5MQD0|SPIKE_CVHN1 Spike glycoprotein OS=Human coronavirus HKU...  452     5e-136
sp|P15423|SPIKE_CVH22 Spike glycoprotein OS=Human coronavirus 229...  364     3e-105
sp|P12650|SPIKE_IBVK Spike glycoprotein OS=Avian infectious bronc...  352     2e-101
sp|P12651|SPIKE_IBVM Spike glycoprotein OS=Avian infectious bronc...  349     3e-100
sp|P05135|SPIKE_IBV6 Spike glycoprotein OS=Avian infectious bronc...  347     2e-99 
sp|Q6Q1S2|SPIKE_CVHNL Spike glycoprotein OS=Human coronavirus NL6...  349     4e-99 
sp|P12722|SPIKE_IBVD2 Spike glycoprotein OS=Avian infectious bron...  345     5e-99 
sp|P27655|SPIKE_CVPR8 Spike glycoprotein OS=Porcine respiratory c...  344     5e-98 
sp|P11223|SPIKE_IBVB Spike glycoprotein OS=Avian infectious bronc...  341     2e-97 
sp|P24413|SPIKE_CVPRM Spike glycoprotein OS=Porcine respiratory c...  338     4e-96 
sp|Q65984|SPIKE_CVCAK Spike glycoprotein OS=Canine coronavirus (s...  339     2e-95 
sp|Q0Q466|SPIKE_BC512 Spike glycoprotein OS=Bat coronavirus 512/2...  337     4e-95 
sp|P10033|SPIKE_FIPV Spike glycoprotein OS=Feline coronavirus (st...  337     9e-95 
sp|P07946|SPIKE_CVPPU Spike glycoprotein OS=Porcine transmissible...  337     1e-94 
sp|Q7T6T3|SPIKE_CVCBG Spike glycoprotein OS=Canine coronavirus (s...  337     1e-94 
sp|P33470|SPIKE_CVPMI Spike glycoprotein OS=Porcine transmissible...  335     5e-94 
sp|Q01977|SPIKE_CVPRT Spike glycoprotein OS=Porcine transmissible...  334     1e-93 
sp|P18450|SPIKE_CVPFS Spike glycoprotein OS=Porcine transmissible...  332     5e-93 
sp|P36300|SPIKE_CVCAI Spike glycoprotein OS=Canine coronavirus (s...  328     1e-91 
sp|Q91AV1|SPIKE_PEDV7 Spike glycoprotein OS=Porcine epidemic diar...  314     4e-87 
sp|Q6GH02|TELL_STAAR TelA-like protein SAR1418 OS=Staphylococcus ...  37.4    0.93  
sp|Q5HG14|TELL_STAAC TelA-like protein SACOL1441 OS=Staphylococcu...  37.4    0.93  
sp|Q2FYM7|TELL_STAA8 TelA-like protein SAOUHSC_01408 OS=Staphyloc...  37.4    0.93  
sp|Q2FH32|TELL_STAA3 TelA-like protein SAUSA300_1299 OS=Staphyloc...  37.4    0.93  
sp|P60108|TELL_STAAN TelA-like protein SA1238 OS=Staphylococcus a...  37.4    0.95  
sp|P60107|TELL_STAAM TelA-like protein SAV1406 OS=Staphylococcus ...  37.4    0.95  
sp|Q2YY12|TELL_STAAB TelA-like protein SAB1262 OS=Staphylococcus ...  37.4    0.96  
sp|Q8NWS1|TELL_STAAW TelA-like protein MW1294 OS=Staphylococcus a...  37.0    1.0   
sp|Q6G9F5|TELL_STAAS TelA-like protein SAS1347 OS=Staphylococcus ...  37.0    1.0   
sp|B8F3P6|MUKF_GLAP5 Chromosome partition protein MukF OS=Glaesse...  37.4    1.1   
sp|Q38WX8|TYSY_LATSS Thymidylate synthase OS=Latilactobacillus sa...  35.8    2.2   
sp|P48479|NIM1_NEUCR G2-specific protein kinase nim-1 OS=Neurospo...  35.8    3.1   
sp|A1S7B2|HFLD_SHEAM High frequency lysogenization protein HflD h...  34.7    3.7   
sp|A3PBY1|MEND_PROM0 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohe...  35.0    5.2   
sp|Q9HG09|PEX14_PICPA Peroxisomal membrane protein PEX14 OS=Komag...  35.0    5.3   
sp|Q9PKF2|SKPL_CHLMU Skp-like protein OS=Chlamydia muridarum (str...  33.5    7.8   
sp|Q9UL45|BL1S6_HUMAN Biogenesis of lysosome-related organelles c...  33.1    9.6   


>sp|P0DTC2|SPIKE_SARS2 Spike glycoprotein OS=Severe acute respiratory 
syndrome coronavirus 2 OX=2697049 GN=S PE=1 SV=1
Length=1273

 Score = 2637 bits (6834),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1273/1273 (100%), Positives = 1273/1273 (100%), Gaps = 0/1273 (0%)

Query  1     MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFS  60
             MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFS
Sbjct  1     MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFS  60

Query  61    NVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIV  120
             NVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIV
Sbjct  61    NVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIV  120

Query  121   NNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLE  180
             NNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLE
Sbjct  121   NNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLE  180

Query  181   GKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT  240
             GKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT
Sbjct  181   GKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT  240

Query  241   LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETK  300
             LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETK
Sbjct  241   LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETK  300

Query  301   CTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISN  360
             CTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISN
Sbjct  301   CTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISN  360

Query  361   CVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIAD  420
             CVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIAD
Sbjct  361   CVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIAD  420

Query  421   YNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC  480
             YNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC
Sbjct  421   YNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC  480

Query  481   NGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVN  540
             NGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVN
Sbjct  481   NGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVN  540

Query  541   FNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITP  600
             FNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITP
Sbjct  541   FNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITP  600

Query  601   GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY  660
             GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY
Sbjct  601   GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY  660

Query  661   ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI  720
             ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI
Sbjct  661   ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI  720

Query  721   SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQE  780
             SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQE
Sbjct  721   SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQE  780

Query  781   VFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDC  840
             VFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDC
Sbjct  781   VFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDC  840

Query  841   LGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAM  900
             LGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAM
Sbjct  841   LGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAM  900

Query  901   QMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALN  960
             QMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALN
Sbjct  901   QMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALN  960

Query  961   TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA  1020
             TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA
Sbjct  961   TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA  1020

Query  1021  SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPA  1080
             SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPA
Sbjct  1021  SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPA  1080

Query  1081  ICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP  1140
             ICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP
Sbjct  1081  ICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP  1140

Query  1141  LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL  1200
             LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL
Sbjct  1141  LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL  1200

Query  1201  QELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDD  1260
             QELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDD
Sbjct  1201  QELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDD  1260

Query  1261  SEPVLKGVKLHYT  1273
             SEPVLKGVKLHYT
Sbjct  1261  SEPVLKGVKLHYT  1273


>sp|P59594|SPIKE_SARS Spike glycoprotein OS=Severe acute respiratory 
syndrome coronavirus OX=694009 GN=S PE=1 SV=1
Length=1255

 Score = 2039 bits (5282),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 971/1277 (76%), Positives = 1109/1277 (87%), Gaps = 26/1277 (2%)

Query  1     MFVFLVLLPLVSSQCVNLTTRTQ--LPPAYTN--SFTRGVYYPDKVFRSSVLHSTQDLFL  56
             MF+FL+ L L S   ++  T       P YT   S  RGVYYPD++FRS  L+ TQDLFL
Sbjct  1     MFIFLLFLTLTSGSDLDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFL  60

Query  57    PFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQS  116
             PF+SNVT FH I+         F NPV+PF DG+YFA+TEKSN++RGW+FG+T+++K+QS
Sbjct  61    PFYSNVTGFHTIN-------HTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQS  113

Query  117   LLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFL  176
             ++I+NN+TNVVI+ C F+ C++PF  V    +     ++   ++ +A NCTFEY+S  F 
Sbjct  114   VIIINNSTNVVIRACNFELCDNPFFAV----SKPMGTQTHTMIFDNAFNCTFEYISDAFS  169

Query  177   MDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINIT  236
             +D+  K GNFK+LREFVFKN DG+  +Y  + PI++VRDLP GF+ L+P+  LP+GINIT
Sbjct  170   LDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINIT  229

Query  237   RFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPL  296
              F+ +L    +  +P      W   AAAY+VGYL+P TF+LKY+ENGTITDAVDC+ +PL
Sbjct  230   NFRAIL----TAFSPAQDI--WGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPL  283

Query  297   SETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRK  356
             +E KC++KSF ++KGIYQTSNFRV P+  +VRFPNITNLCPFGEVFNAT+F SVYAW RK
Sbjct  284   AELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVYAWERK  343

Query  357   RISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTG  416
             +ISNCVADYSVLYNS  FSTFKCYGVS TKLNDLCF+NVYADSFV++GD+VRQIAPGQTG
Sbjct  344   KISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTG  403

Query  417   KIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAG  476
              IADYNYKLPDDF GCV+AWN+ N+D+   GNYNY YR  R   L+PFERDIS   +   
Sbjct  404   VIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPD  463

Query  477   STPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKN  536
               PC      NCY+PL  YGF  T G+GYQPYRVVVLSFELL+APATVCGPK ST+L+KN
Sbjct  464   GKPCTP-PALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKN  522

Query  537   KCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVS  596
             +CVNFNFNGLTGTGVLT S+K+F PFQQFGRD++D TD+VRDP+T EILDI+PCSFGGVS
Sbjct  523   QCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVS  582

Query  597   VITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHV  656
             VITPGTN S++VAVLYQDVNCT+V  AIHADQLTP WR+YSTG+NVFQT+AGCLIGAEHV
Sbjct  583   VITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHV  642

Query  657   NNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPT  716
             + SYECDIPIGAGICASY T +      RS + +SI+AYTMSLGA++S+AYSNN+IAIPT
Sbjct  643   DTSYECDIPIGAGICASYHTVS----LLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPT  698

Query  717   NFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDK  776
             NF+IS+TTE++PVSM KTSVDC MYICGDSTEC+NLLLQYGSFCTQLNRAL+GIA EQD+
Sbjct  699   NFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDR  758

Query  777   NTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQ  836
             NT+EVFAQVKQ+YKTP +K FGGFNFSQILPDP KP+KRSFIEDLLFNKVTLADAGF+KQ
Sbjct  759   NTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQ  818

Query  837   YGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQI  896
             YG+CLGDI ARDLICAQKFNGLTVLPPLLTD+MIA YT+AL++GT T+GWTFGAGAALQI
Sbjct  819   YGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQI  878

Query  897   PFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNA  956
             PFAMQMAYRFNGIGVTQNVLYENQK IANQFN AI +IQ+SL++T++ALGKLQDVVNQNA
Sbjct  879   PFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNA  938

Query  957   QALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAA  1016
             QALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAA
Sbjct  939   QALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAA  998

Query  1017  EIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFT  1076
             EIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQ+APHGVVFLHVTYVP+QE+NFT
Sbjct  999   EIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFT  1058

Query  1077  TAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNT  1136
             TAPAICH+GKA+FPREGVFV NGT WF+TQRNF+ PQIITTDNTFVSGNCDVVIGI+NNT
Sbjct  1059  TAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNT  1118

Query  1137  VYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNES  1196
             VYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNES
Sbjct  1119  VYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNES  1178

Query  1197  LIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKF  1256
             LIDLQELGKYEQYIKWPWY+WLGFIAGLIAIVMVTI+LCCMTSCCSCLKG CSCGSCCKF
Sbjct  1179  LIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKF  1238

Query  1257  DEDDSEPVLKGVKLHYT  1273
             DEDDSEPVLKGVKLHYT
Sbjct  1239  DEDDSEPVLKGVKLHYT  1255


>sp|Q3LZX1|SPIKE_BCHK3 Spike glycoprotein OS=Bat coronavirus HKU3 
OX=442736 GN=S PE=3 SV=1
Length=1242

 Score = 2001 bits (5184),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 968/1273 (76%), Positives = 1087/1273 (85%), Gaps = 35/1273 (3%)

Query  1     MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFS  60
             +F FL  L      C  ++ + Q   A  +S  RGVYY D +FRS VLH TQD FLPF S
Sbjct  5     IFAFLANLAKAQEGCGIISRKPQPKMAQVSSSRRGVYYNDDIFRSDVLHLTQDYFLPFDS  64

Query  61    NVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIV  120
             N+T + +++V     T  FDNP+L F DGVYFA+TEKSN+IRGWIFG++ D+ TQS +IV
Sbjct  65    NLTQYFSLNVDSDRYT-YFDNPILDFGDGVYFAATEKSNVIRGWIFGSSFDNTTQSAVIV  123

Query  121   NNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLE  180
             NN+T+++I+VC F  C +P   V       +W      VY SA NCT++ V + F +D  
Sbjct  124   NNSTHIIIRVCNFNLCKEPMYTVSRGTQQNAW------VYQSAFNCTYDRVEKSFQLDTT  177

Query  181   GKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT  240
              K GNFK+LRE+VFKN DG+  +Y  +T +NL R LP GFS L+P++ LP GINIT ++ 
Sbjct  178   PKTGNFKDLREYVFKNRDGFLSVYQTYTAVNLPRGLPTGFSVLKPILKLPFGINITSYRV  237

Query  241   LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETK  300
             ++A+         ++S +   +AAYYVG L+  TF+L++NENGTITDAVDC+ +PL+E K
Sbjct  238   VMAMF------SQTTSNFLPESAAYYVGNLKYSTFMLRFNENGTITDAVDCSQNPLAELK  291

Query  301   CTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISN  360
             CT+K+F V+KGIYQTSNFRV PT+ ++RFPNITN CPF +VFNATRF +VYAW R +IS+
Sbjct  292   CTIKNFNVDKGIYQTSNFRVSPTQEVIRFPNITNRCPFDKVFNATRFPNVYAWERTKISD  351

Query  361   CVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIAD  420
             CVADY+VLYNS SFSTFKCYGVSP+KL DLCFT+VYAD+F+IR  EVRQ+APG+TG IAD
Sbjct  352   CVADYTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGETGVIAD  411

Query  421   YNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC  480
             YNYKLPDDFTGCVIAWN+   D+      NY YR  RK+ LKPFERD+S++         
Sbjct  412   YNYKLPDDFTGCVIAWNTAKHDTG-----NYYYRSHRKTKLKPFERDLSSD-------DG  459

Query  481   NGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVN  540
             NGV      + L +Y F P   V YQ  RVVVLSFELL+APATVCGPK ST LVKN+CVN
Sbjct  460   NGV------YTLSTYDFNPNVPVAYQATRVVVLSFELLNAPATVCGPKLSTELVKNQCVN  513

Query  541   FNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITP  600
             FNFNGL GTGVLT S+K+F  FQQFGRD +D TD+VRDPQTLEILDI+PCSFGGVSVITP
Sbjct  514   FNFNGLKGTGVLTSSSKRFQSFQQFGRDTSDFTDSVRDPQTLEILDISPCSFGGVSVITP  573

Query  601   GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY  660
             GTN S++VAVLYQDVNCT+VP AI ADQLTP WRVYSTG NVFQT+AGCLIGAEHVN SY
Sbjct  574   GTNASSEVAVLYQDVNCTDVPTAIRADQLTPAWRVYSTGVNVFQTQAGCLIGAEHVNASY  633

Query  661   ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI  720
             ECDIPIGAGICASY T +      RS   +SI+AYTMSLGAENS+AY+NNSIAIPTNF+I
Sbjct  634   ECDIPIGAGICASYHTAS----VLRSTGQKSIVAYTMSLGAENSIAYANNSIAIPTNFSI  689

Query  721   SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQE  780
             SVTTE++PVSM KT+VDCTMYICGDS ECSNLLLQYGSFCTQLNRALTGIA+EQDKNTQE
Sbjct  690   SVTTEVMPVSMAKTAVDCTMYICGDSLECSNLLLQYGSFCTQLNRALTGIAIEQDKNTQE  749

Query  781   VFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDC  840
             VFAQVKQ+YKTP IKDFGGFNFSQILPDPSKP+KRSFIEDLLFNKVTLADAGF+KQYGDC
Sbjct  750   VFAQVKQMYKTPAIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLADAGFMKQYGDC  809

Query  841   LGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAM  900
             LGD++ARDLICAQKFNGLTVLPPLLTDEM+A YT+AL++GT T+GWTFGAGAALQIPFAM
Sbjct  810   LGDVSARDLICAQKFNGLTVLPPLLTDEMVAAYTAALVSGTATAGWTFGAGAALQIPFAM  869

Query  901   QMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALN  960
             QMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQ+SLSSTASALGKLQDVVNQNAQALN
Sbjct  870   QMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQESLSSTASALGKLQDVVNQNAQALN  929

Query  961   TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA  1020
             TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA
Sbjct  930   TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA  989

Query  1021  SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPA  1080
             SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVP+QEKNFTTAPA
Sbjct  990   SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPSQEKNFTTAPA  1049

Query  1081  ICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP  1140
             ICH+GKA+FPREGVFVSNGT WF+TQRNFY PQ+ITTDNTFVSGNCDVVIGI+NNTVYDP
Sbjct  1050  ICHEGKAYFPREGVFVSNGTSWFITQRNFYSPQLITTDNTFVSGNCDVVIGIINNTVYDP  1109

Query  1141  LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL  1200
             LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL
Sbjct  1110  LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL  1169

Query  1201  QELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDD  1260
             QELGKYEQYIKWPWY+WLGFIAGLIAIVMVTI+LCCMTSCCSCLKG CSCGSCCKFDEDD
Sbjct  1170  QELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDD  1229

Query  1261  SEPVLKGVKLHYT  1273
             SEPVLKGVKLHYT
Sbjct  1230  SEPVLKGVKLHYT  1242


>sp|Q3I5J5|SPIKE_BCRP3 Spike glycoprotein OS=Bat coronavirus Rp3/2004 
OX=349344 GN=S PE=1 SV=1
Length=1241

 Score = 1986 bits (5145),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 959/1273 (75%), Positives = 1083/1273 (85%), Gaps = 36/1273 (3%)

Query  1     MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFS  60
             +  FL  L      C  ++ + Q   A  +S  RGVYY D +FRS+VLH TQD FLPF S
Sbjct  5     ILAFLASLAKAQEGCGIISRKPQPKMAQVSSSRRGVYYNDDIFRSNVLHLTQDYFLPFDS  64

Query  61    NVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIV  120
             N+T + +++V     T  FDNP+L F DGVYFA+TEKSN+IRGWIFG+T D+ TQS +IV
Sbjct  65    NLTQYFSLNVDSDRFT-YFDNPILDFGDGVYFAATEKSNVIRGWIFGSTFDNTTQSAVIV  123

Query  121   NNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLE  180
             NN+T+++I+VC F  C +P   V       SW      VY SA NCT++ V + F +D  
Sbjct  124   NNSTHIIIRVCNFNLCKEPMYTVSRGAQQSSW------VYQSAFNCTYDRVEKSFQLDTA  177

Query  181   GKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT  240
              K GNFK+LRE+VFKN DG+  +Y  +T +NL R LP GFS L P++ LP GINIT ++ 
Sbjct  178   PKTGNFKDLREYVFKNRDGFLSVYQTYTAVNLPRGLPIGFSVLRPILKLPFGINITSYRV  237

Query  241   LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETK  300
             ++A+         ++S +   +AAYYVG L+  TF+L +NENGTIT+A+DCA +PL+E K
Sbjct  238   VMAMF------SQTTSNFLPESAAYYVGNLKYTTFMLSFNENGTITNAIDCAQNPLAELK  291

Query  301   CTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISN  360
             CT+K+F V KGIYQTSNFRV PT+ ++RFPNITN CPF +VFNATRF +VYAW R +IS+
Sbjct  292   CTIKNFNVSKGIYQTSNFRVSPTQEVIRFPNITNRCPFDKVFNATRFPNVYAWERTKISD  351

Query  361   CVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIAD  420
             CVADY+VLYNS SFSTFKCYGVSP+KL DLCFT+VYAD+F+IR  EVRQ+APG+TG IAD
Sbjct  352   CVADYTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGETGVIAD  411

Query  421   YNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC  480
             YNYKLPDDFTGCVIAWN+   D        Y YR  RK+ LKPFERD+S++         
Sbjct  412   YNYKLPDDFTGCVIAWNTAKQDQG-----QYYYRSHRKTKLKPFERDLSSDE--------  458

Query  481   NGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVN  540
             NGV        L +Y F P+  V YQ  RVVVLSFELL+APATVCGPK ST LVKN+CVN
Sbjct  459   NGVR------TLSTYDFYPSVPVAYQATRVVVLSFELLNAPATVCGPKLSTQLVKNQCVN  512

Query  541   FNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITP  600
             FNFNGL GTGVLTES+K+F  FQQFGRD +D TD+VRDPQTLEILDI+PCSFGGVSVITP
Sbjct  513   FNFNGLKGTGVLTESSKRFQSFQQFGRDTSDFTDSVRDPQTLEILDISPCSFGGVSVITP  572

Query  601   GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY  660
             GTN S++VAVLYQDVNCT+VP AIHADQLTP WRVYSTG+NVFQT+AGCLIGAEHVN SY
Sbjct  573   GTNASSEVAVLYQDVNCTDVPAAIHADQLTPAWRVYSTGTNVFQTQAGCLIGAEHVNASY  632

Query  661   ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI  720
             ECDIPIGAGICASY T +      RSV  +SI+AYTMSLGAENS+AY+NNSIAIPTNF+I
Sbjct  633   ECDIPIGAGICASYHTAST----LRSVGQKSIVAYTMSLGAENSIAYANNSIAIPTNFSI  688

Query  721   SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQE  780
             SVTTE++PVSM KTSVDCTMYICGDS ECSNLLLQYGSFCTQLNRAL+GIA+EQDKNTQE
Sbjct  689   SVTTEVMPVSMAKTSVDCTMYICGDSLECSNLLLQYGSFCTQLNRALSGIAIEQDKNTQE  748

Query  781   VFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDC  840
             VFAQVKQ+YKTP IKDFGGFNFSQILPDPSKP+KRSFIEDLLFNKVTLADAGF+KQYG+C
Sbjct  749   VFAQVKQMYKTPAIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLADAGFMKQYGEC  808

Query  841   LGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAM  900
             LGDI+ARDLICAQKFNGLTVLPPLLTDEMIA YT+AL++GT T+GWTFGAG+ALQIPFAM
Sbjct  809   LGDISARDLICAQKFNGLTVLPPLLTDEMIAAYTAALVSGTATAGWTFGAGSALQIPFAM  868

Query  901   QMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALN  960
             QMAYRFNGIGVTQNVLYENQK IANQFN AI +IQ+SL++T++ALGKLQDVVNQNAQALN
Sbjct  869   QMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALN  928

Query  961   TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA  1020
             TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA
Sbjct  929   TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA  988

Query  1021  SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPA  1080
             SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQ+APHGVVFLHVTYVP+QE+NFTTAPA
Sbjct  989   SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPA  1048

Query  1081  ICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP  1140
             ICH+GKA+FPREGVFVSNGT WF+TQRNFY PQIITTDNTFV+G+CDVVIGI+NNTVYDP
Sbjct  1049  ICHEGKAYFPREGVFVSNGTSWFITQRNFYSPQIITTDNTFVAGSCDVVIGIINNTVYDP  1108

Query  1141  LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL  1200
             LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL
Sbjct  1109  LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL  1168

Query  1201  QELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDD  1260
             QELGKYEQYIKWPWY+WLGFIAGLIAIVMVTI+LCCMTSCCSCLKG CSCGSCCKFDEDD
Sbjct  1169  QELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDD  1228

Query  1261  SEPVLKGVKLHYT  1273
             SEPVLKGVKLHYT
Sbjct  1229  SEPVLKGVKLHYT  1241


>sp|Q0Q475|SPIKE_BC279 Spike glycoprotein OS=Bat coronavirus 279/2005 
OX=389167 GN=S PE=3 SV=1
Length=1241

 Score = 1974 bits (5113),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 953/1275 (75%), Positives = 1081/1275 (85%), Gaps = 38/1275 (3%)

Query  1     MFVFLVLLPLVSSQ--CVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPF  58
             + +F +L  L  +Q  C  ++ + Q      +S  RGVYY D +FRS VLH TQD FLPF
Sbjct  3     VLIFALLFSLAKAQEGCGIISRKPQPKMEKVSSSRRGVYYNDDIFRSDVLHLTQDYFLPF  62

Query  59    FSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLL  118
              SN+T + ++++  +N    FDNP+L F DGVYFA+TEKSN+IRGWIFG++ D+ TQS +
Sbjct  63    DSNLTQYFSLNID-SNKYTYFDNPILDFGDGVYFAATEKSNVIRGWIFGSSFDNTTQSAI  121

Query  119   IVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMD  178
             IVNN+T+++I+VC F  C +P   V       SW      VY SA NCT++ V + F +D
Sbjct  122   IVNNSTHIIIRVCNFNLCKEPMYTVSKGTQQSSW------VYQSAFNCTYDRVEKSFQLD  175

Query  179   LEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRF  238
                K GNFK+LRE+VFKN DG+  +Y  +T +NL R  P GFS L P++ LP GINIT +
Sbjct  176   TAPKTGNFKDLREYVFKNRDGFLSVYQTYTAVNLPRGFPAGFSVLRPILKLPFGINITSY  235

Query  239   QTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSE  298
             + ++ +   +      +S +   +AAYYVG L+  TF+L +NENGTITDAVDC+ +PL+E
Sbjct  236   RVVMTMFSQF------NSNFLPESAAYYVGNLKYTTFMLSFNENGTITDAVDCSQNPLAE  289

Query  299   TKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRI  358
              KCT+K+F V KGIYQTSNFRV PT+ +VRFPNITN CPF +VFNA+RF +VYAW R +I
Sbjct  290   LKCTIKNFNVSKGIYQTSNFRVTPTQEVVRFPNITNRCPFDKVFNASRFPNVYAWERTKI  349

Query  359   SNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKI  418
             S+CVADY+VLYNS SFSTFKCYGVSP+KL DLCFT+VYAD+F+IR  EVRQ+APG+TG I
Sbjct  350   SDCVADYTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGETGVI  409

Query  419   ADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGST  478
             ADYNYKLPDDFTGCVIAWN+   D        Y YR +RK  LKPFERD+S++       
Sbjct  410   ADYNYKLPDDFTGCVIAWNTAQQDQG-----QYYYRSYRKEKLKPFERDLSSDE------  458

Query  479   PCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKC  538
               NGV      + L +Y F P+  V YQ  RVVVLSFELL+APATVCGPK ST LVKN+C
Sbjct  459   --NGV------YTLSTYDFYPSIPVEYQATRVVVLSFELLNAPATVCGPKLSTQLVKNQC  510

Query  539   VNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVI  598
             VNFNFNGL GTGVLT S+K+F  FQQFGRD +D TD+VRDPQTLEILDI+PCSFGGVSVI
Sbjct  511   VNFNFNGLRGTGVLTTSSKRFQSFQQFGRDTSDFTDSVRDPQTLEILDISPCSFGGVSVI  570

Query  599   TPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNN  658
             TPGTN S++VAVLYQDVNCT+VP +IHADQLTP WRVYSTG NVFQT+AGCLIGAEHVN 
Sbjct  571   TPGTNASSEVAVLYQDVNCTDVPTSIHADQLTPAWRVYSTGVNVFQTQAGCLIGAEHVNA  630

Query  659   SYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNF  718
             SYECDIPIGAGICASY T +      RS   +SI+AYTMSLGAENS+AY+NNSIAIPTNF
Sbjct  631   SYECDIPIGAGICASYHTAS----VLRSTGQKSIVAYTMSLGAENSIAYANNSIAIPTNF  686

Query  719   TISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNT  778
             +ISVTTE++PVS+ KTSVDCTMYICGDS ECSNLLLQYGSFCTQLNRALTGIA+EQDKNT
Sbjct  687   SISVTTEVMPVSIAKTSVDCTMYICGDSLECSNLLLQYGSFCTQLNRALTGIAIEQDKNT  746

Query  779   QEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYG  838
             QEVFAQVKQ+YKTP IKDFGGFNFSQILPDPSKP+KRSFIEDLLFNKVTLADAGF+KQYG
Sbjct  747   QEVFAQVKQMYKTPAIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLADAGFMKQYG  806

Query  839   DCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPF  898
             +CLGDI+ARDLICAQKFNGLTVLPPLLTDEMIA YT+AL++GT T+GWTFGAG+ALQIPF
Sbjct  807   ECLGDISARDLICAQKFNGLTVLPPLLTDEMIAAYTAALVSGTATAGWTFGAGSALQIPF  866

Query  899   AMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQA  958
             AMQMAYRFNGIGVTQNVLYENQK IANQFN AI +IQ+SL++T++ALGKLQDVVN NAQA
Sbjct  867   AMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNDNAQA  926

Query  959   LNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEI  1018
             LNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEI
Sbjct  927   LNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEI  986

Query  1019  RASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTA  1078
             RASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQ+APHGVVFLHVTYVP+QE+NFTTA
Sbjct  987   RASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTA  1046

Query  1079  PAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVY  1138
             PAICH+GKA+FPREGVFVSNGT WF+TQRNFY PQIITTDNTFV+GNCDVVIGI+NNTVY
Sbjct  1047  PAICHEGKAYFPREGVFVSNGTSWFITQRNFYSPQIITTDNTFVAGNCDVVIGIINNTVY  1106

Query  1139  DPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLI  1198
             DPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLI
Sbjct  1107  DPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLI  1166

Query  1199  DLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDE  1258
             DLQELGKYEQYIKWPWY+WLGFIAGLIAIVMVTI+LCCMTSCCSCLKG CSCGSCCKFDE
Sbjct  1167  DLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDE  1226

Query  1259  DDSEPVLKGVKLHYT  1273
             DDSEPVLKGVKLHYT
Sbjct  1227  DDSEPVLKGVKLHYT  1241


>sp|A3EXG6|SPIKE_BCHK9 Spike glycoprotein OS=Bat coronavirus HKU9 
OX=694006 GN=S PE=1 SV=1
Length=1274

 Score = 614 bits (1584),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 420/1286 (33%), Positives = 648/1286 (50%), Gaps = 118/1286 (9%)

Query  36    VYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIH-VSGTNGTKRFDNPVLPFNDGVYF--  92
             V  PD     S     Q+LF+   SN   +      +G NG   ++  ++P + G++   
Sbjct  45    VLLPDPYIAYSGQTLRQNLFMADMSNTILYPVTPPANGANGGFIYNTSIIPVSAGLFVNT  104

Query  93    -------ASTEKSNIIRGWIFGTTLDSKTQSLLIV-------------NNATNVVIKVCE  132
                    +S        G  FG T ++   ++LI+              N TN+ + VC 
Sbjct  105   WMYRQPASSRAYCQEPFGVAFGDTFENDRIAILIMAPDNLGSWSAVAPRNQTNIYLLVCS  164

Query  133   -FQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLRE  191
                 C +P  G        S++  +  V   +N+C   +V+  F +++   + +      
Sbjct  165   NATLCINP--GFNRWGPAGSFIAPDALV-DHSNSC---FVNNTFSVNISTSRISLA----  214

Query  192   FVFKNIDGYFKIY-SKHTPI-NLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRS-Y  248
             F+FK  DG   IY S   P  N      +G   +   + LP+G N+ R Q   ++ RS  
Sbjct  215   FLFK--DGDLLIYHSGWLPTSNFEHGFSRGSHPMTYFMSLPVGGNLPRAQFFQSIVRSNA  272

Query  249   LTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTV  308
             +  GD     T      +V +L  R  L+ Y  NG++ +A DCA     E  C   SF  
Sbjct  273   IDKGDGMC--TNFDVNLHVAHLINRDLLVSYFNNGSVANAADCADSAAEELYCVTGSFDP  330

Query  309   EKGIYQTSNFRVQPTESIVRFPNITNLC--PFGEVFNATRFASVYAWNRKRISNCVADYS  366
               G+Y  S +R Q     VR     + C  P+  + +  +      W R  + +CV D++
Sbjct  331   PTGVYPLSRYRAQ-VAGFVRVTQRGSYCTPPYSVLQDPPQ---PVVWRRYMLYDCVFDFT  386

Query  367   VLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP  426
             V+ +S      +CYGVSP +L  +C+ +V  D   I    +  +        + YNY LP
Sbjct  387   VVVDSLPTHQLQCYGVSPRRLASMCYGSVTLDVMRINETHLNNLFNRVPDTFSLYNYALP  446

Query  427   DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGF  486
             D+F GC+ A+  N+            Y +  +  +KP  R       Q+ S   + V   
Sbjct  447   DNFYGCLHAFYLNSTAP---------YAVANRFPIKPGGR-------QSNSAFIDTV---  487

Query  487   NCYFPLQSYGFQPTNGVGYQP----YRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFN  542
                           N   Y P    Y + V++ +       VC     T ++ ++CV +N
Sbjct  488   -------------INAAHYSPFSYVYGLAVITLKPAAGSKLVCPVANDTVVITDRCVQYN  534

Query  543   FNGLTGTGVLTESNKKFLP-FQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPG  601
               G TGTGVL+++    +P  + F      T   V    T     I PC    VSV   G
Sbjct  535   LYGYTGTGVLSKNTSLVIPDGKVFTASSTGTIIGVSINST--TYSIMPCVTVPVSV---G  589

Query  602   TNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY-  660
              + + + A+L+  ++C++   A+  + ++  W   +T  + F T +GC++  E  N +  
Sbjct  590   YHPNFERALLFNGLSCSQRSRAV-TEPVSVLWSASATAQDAFDTPSGCVVNVELRNTTIV  648

Query  661   -ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNS---IAIPT  716
               C +PIG  +C  +   + +   A S+    ++ Y      +NS A        + +PT
Sbjct  649   NTCAMPIGNSLC--FINGSIATANADSLPRLQLVNYDPLY--DNSTATPMTPVYWVKVPT  704

Query  717   NFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDK  776
             NFT+S T E +  +  K ++DC  Y+CGDS+ C N+LL YG+FC  +N+AL+ ++   D 
Sbjct  705   NFTLSATEEYIQTTAPKITIDCARYLCGDSSRCLNVLLHYGTFCNDINKALSRVSTILDS  764

Query  777   NTQEVFAQVKQIYKTPPIKDF---GGFNFSQIL----PDPSKPSKRSFIEDLLFNKVTLA  829
                 +  ++  I     +  F   G +NF+ ++    P+    + RS   DLL++KV + 
Sbjct  765   ALLSLVKELS-INTRDEVTTFSFDGDYNFTGLMGCLGPNCGATTYRSAFSDLLYDKVRIT  823

Query  830   DAGFIKQYGDCL-----GDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITS  884
             D GF++ Y  C+     G I  RDL+C Q +NG+ VLPP+++  M A YTS L+    +S
Sbjct  824   DPGFMQSYQKCIDSQWGGSI--RDLLCTQTYNGIAVLPPIVSPAMQALYTSLLVGAVASS  881

Query  885   GWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASA  944
             G+TFG  +A  IPFA Q+ +R NGIGVT  VL ENQKLIA+ FN+A+  IQ   + T+ A
Sbjct  882   GYTFGITSAGVIPFATQLQFRLNGIGVTTQVLVENQKLIASSFNNALVNIQKGFTETSIA  941

Query  945   LGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSL  1004
             L K+QDV+NQ+A  L+TLV QL ++FGAISS +N+I SRL+ + A  ++DRLI GR+  L
Sbjct  942   LSKMQDVINQHAAQLHTLVVQLGNSFGAISSSINEIFSRLEGLAANAEVDRLINGRMMVL  1001

Query  1005  QTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLH  1064
              TYVTQ LI+A+E +A   LAA K+SECV  QS R DFCG G H++S PQ AP+GV+F+H
Sbjct  1002  NTYVTQLLIQASEAKAQNALAAQKISECVKAQSLRNDFCGNGTHVLSIPQLAPNGVLFIH  1061

Query  1065  VTYVPAQEKNFTTAPAICHDGKAHFPREGVFV--SNGTHWFVTQRNFYEPQIITTDNTFV  1122
               Y P +     T+  +CH+G  + PR+G+FV  +N   W  T   FY P  I+  NT V
Sbjct  1062  YAYTPTEYAFVQTSAGLCHNGTGYAPRQGMFVLPNNTNMWHFTTMQFYNPVNISASNTQV  1121

Query  1123  SGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKE  1182
               +C V    VN TV +P  P    F++E DK++KN ++   +  + +  N S V++  +
Sbjct  1122  LTSCSVNYTSVNYTVLEPSVPGDYDFQKEFDKFYKNLSTIFNNTFNPNDFNFSTVDVTAQ  1181

Query  1183  IDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCS  1242
             I  L++V   LN+S IDL++L  YE+ IKWPWY+WL  IAG++ +V+  IML CMT+CCS
Sbjct  1182  IKSLHDVVNQLNQSFIDLKKLNVYEKTIKWPWYVWLAMIAGIVGLVLAVIMLMCMTNCCS  1241

Query  1243  CLKGCCSCGSCC-KFDE-DDSEPVLK  1266
             C KG C C  CC  +D  DD  P ++
Sbjct  1242  CFKGMCDCRRCCGSYDSYDDVYPAVR  1267


>sp|A3EXD0|SPIKE_BCHK5 Spike glycoprotein OS=Bat coronavirus HKU5 
OX=694008 GN=S PE=1 SV=1
Length=1352

 Score = 600 bits (1546),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 396/1067 (37%), Positives = 564/1067 (53%), Gaps = 71/1067 (7%)

Query  246   RSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKS  305
             RS  +P +    W    AA+Y+  L P T+LL ++  G IT AVDC  D L++ +C+ +S
Sbjct  306   RSIRSPFNDRKAW----AAFYIYKLHPLTYLLNFDVEGYITKAVDCGYDDLAQLQCSYES  361

Query  306   FTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADY  365
             F VE G+Y  S+F   P    +     T  C F  +   T    +Y + R   +NC  + 
Sbjct  362   FEVETGVYSVSSFEASPRGEFIE-QATTQECDFTPMLTGTP-PPIYNFKRLVFTNCNYNL  419

Query  366   SVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKL  425
             + L +    S F C+ VSP+ L   C++++  D F    D    + PG  G I  +NYK 
Sbjct  420   TKLLSLFQVSEFSCHQVSPSSLATGCYSSLTVDYFAYSTDMSSYLQPGSAGAIVQFNYK-  478

Query  426   PDDF---TGCVIAWNSNNLDSKVG-GNYNYLYRLFRKSNLKPFERDISTEIYQA--GSTP  479
               DF   T  V+A    NL +     NY YL   ++ S            +Y A    TP
Sbjct  479   -QDFSNPTCRVLATVPQNLTTITKPSNYAYLTECYKTSAYG------KNYLYNAPGAYTP  531

Query  480   CNGV--EGFNCYFPLQSYGFQPTNGVGY----QPYRVVVLSFELLHAPATVCGPKKSTN-  532
             C  +   GF+  +   S G   T G  Y          ++S +      +VC  +   N 
Sbjct  532   CLSLASRGFSTKYQSHSDGELTTTGYIYPVTGNLQMAFIISVQYGTDTNSVCPMQALRND  591

Query  533   -LVKNK---CVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDIT  588
               +++K   CV ++ +G+TG GV        L  Q+F  D  D               + 
Sbjct  592   TSIEDKLDVCVEYSLHGITGRGVFHNCTSVGLRNQRFVYDTFDNLVGYHSDNG-NYYCVR  650

Query  589   PCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA-DQLTPTWRVYSTGSNVFQTRA  647
             PC    VSVI      SN  A L+  V C+ V   +    ++T T  +  T     QT  
Sbjct  651   PCVSVPVSVIY--DKASNSHATLFGSVACSHVTTMMSQFSRMTKTNLLARTTPGPLQTTV  708

Query  648   GCLIGAEHVNNSY---ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS  704
             GC +G   +N+S    EC +P+G  +CA   T ++  RRA S AS      T++  +  +
Sbjct  709   GCAMG--FINSSMVVDECQLPLGQSLCAIPPTTSSRVRRATSGASDVFQIATLNFTSPLT  766

Query  705   VAYSNNS---IAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCT  761
             +A  N++   +A+PTNFT  VT E +  ++ K +VDC  Y+C    +C +LL +YG FC+
Sbjct  767   LAPINSTGFVVAVPTNFTFGVTQEFIETTIQKITVDCKQYVCNGFKKCEDLLKEYGQFCS  826

Query  762   QLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDF--GGFNFSQI-LPDPSKPSK--RS  816
             ++N+AL G  + QD++   +F+ +K    T P++    G FN + + +P  +   +  RS
Sbjct  827   KINQALHGANLRQDESIANLFSSIK-TQNTQPLQAGLNGDFNLTMLQIPQVTTGERKYRS  885

Query  817   FIEDLLFNKVTLADAGFIKQYGDCL--GDIAARDLICAQKFNGLTVLPPLLTDEMIAQYT  874
              IEDLLFNKVT+AD G+++ Y +C+  G  +ARDLICAQ   G  VLPPL    M A YT
Sbjct  886   TIEDLLFNKVTIADPGYMQGYDECMQQGPQSARDLICAQYVAGYKVLPPLYDPYMEAAYT  945

Query  875   SALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKI  934
             S+LL     + WT G  +   IPFA  + YR NG+G+TQ VL ENQK+IAN+FN A+G +
Sbjct  946   SSLLGSIAGASWTAGLSSFAAIPFAQSIFYRLNGVGITQQVLSENQKIIANKFNQALGAM  1005

Query  935   QDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQID  994
             Q   ++T  A  K+QD VN NA AL+ L  +LS+ FGAISS ++DIL+RLD VE E QID
Sbjct  1006  QTGFTTTNLAFNKVQDAVNANAMALSKLAAELSNTFGAISSSISDILARLDTVEQEAQID  1065

Query  995   RLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQ  1054
             RLI GRL SL  +V QQL+R      SA LA  K++ECV  QSKR  FCG G H++SF  
Sbjct  1066  RLINGRLTSLNAFVAQQLVRTEAAARSAQLAQDKVNECVKSQSKRNGFCGTGTHIVSFAI  1125

Query  1055  SAPHGVVFLHVTYVPAQEKNFTTAPAICHD---GKAHFPREGVFVSNGT---------HW  1102
             +AP+G+ F HV Y P    N T A  +C+     K   P +G FV N T          W
Sbjct  1126  NAPNGLYFFHVGYQPTSHVNATAAYGLCNTENPQKCIAPIDGYFVLNQTTSTVADSDQQW  1185

Query  1103  FVTQRNFYEPQIITTDNT-FVSGNCDVVIGIVNNTVYDPL---QPELDSFKEELDKYFKN  1158
             + T  +F+ P+ IT  N+ +VS   DV    + N +  PL     +LD FKEEL+++FKN
Sbjct  1186  YYTGSSFFHPEPITEANSKYVS--MDVKFENLTNRLPPPLLSNSTDLD-FKEELEEFFKN  1242

Query  1159  HTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWL  1218
              +S   +  +IS IN +++N+  E+  L+EV K LNES IDL+ELG Y  Y KWPWYIWL
Sbjct  1243  VSSQGPNFQEISKINTTLLNLNTELMVLSEVVKQLNESYIDLKELGNYTFYQKWPWYIWL  1302

Query  1219  GFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCC-KFDEDDSEPV  1264
             GFIAGL+A+ +    + C T C +   G   C  CC  +DE + E +
Sbjct  1303  GFIAGLVALALCVFFILCCTGCGTSCLGKLKCNRCCDSYDEYEVEKI  1349


>sp|Q0Q4F2|SPIKE_BC133 Spike glycoprotein OS=Bat coronavirus 133/2005 
OX=389230 GN=S PE=3 SV=1
Length=1350

 Score = 571 bits (1471),  Expect = 5e-180, Method: Compositional matrix adjust.
 Identities = 398/1096 (36%), Positives = 568/1096 (52%), Gaps = 91/1096 (8%)

Query  232   GINITRFQTL---------LALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN  282
             G N+ RF TL           + RS+ +  +    W    AA+YV  L   T+LL ++ +
Sbjct  280   GGNMFRFATLPVYEGIKYYTVIPRSFRSKANKREAW----AAFYVYKLHQLTYLLDFSVD  335

Query  283   GTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVF  342
             G I  A+DC  D LS+  C+  SF V+ G+Y  S++    T + +  PN+T  C F  + 
Sbjct  336   GYIRRAIDCGHDDLSQLHCSYTSFEVDTGVYSVSSYEASATGTFIEQPNVTE-CDFSPML  394

Query  343   NATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVI  402
                    VY + R   SNC  + + L +  +   F C G+SP  +   C++ +  D F  
Sbjct  395   TGVA-PQVYNFKRLVFSNCNYNLTKLLSLFAVDEFSCNGISPDAIARGCYSTLTVDYFAY  453

Query  403   RGDEVRQIAPGQTGKIADYNYKLPDDFTGC-VIAWNSNNLDSKVGGNYNYLYRLFRKSNL  461
                    I PG  G I  YNYK       C V+A   +N+     G Y Y+ +  R   L
Sbjct  454   PLSMKSYIRPGSAGNIPLYNYKQSFANPTCRVMASVPDNVTITKPGAYGYISKCSR---L  510

Query  462   KPFERDISTEIYQAGSTPCNGVEGFNC--YFPL--------------QSYGFQPTNGVGY  505
                 +DI T +Y       N  E   C  + PL              Q  G     GVG 
Sbjct  511   TGVNQDIETPLY------INPGEYSICRDFAPLGFSEDGQVFKRTLTQFEGGGLLIGVGT  564

Query  506   Q-PYRV-----VVLSFELLHAPATVC-----GPKKSTNLVKNKCVNFNFNGLTGTGVLTE  554
             + P         V+S +      +VC     G   +      KCV+++  G+TG GV   
Sbjct  565   RVPMTANLEMGFVISVQYGTGTDSVCPMLDLGDSLTITNRLGKCVDYSLYGVTGRGVFQN  624

Query  555   SNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQD  614
                  +  Q+F  D  D               + PC    VSVI     ++N  A L+  
Sbjct  625   CTAVGVKQQRFVYDSFDNLVGYYSDDG-NYYCVRPCVSVPVSVIY--DKSTNLHATLFGS  681

Query  615   VNCTEVPVAIHA-DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY---ECDIPIGAGI  670
             V C  V   +    +LT +       +   QT  GC+IG    NNS    +C +P+G  +
Sbjct  682   VACEHVTTMMSQFSRLTQSNLRRRDSNTPLQTAVGCVIGLS--NNSLVVSDCKLPLGQSL  739

Query  671   CASYQTQTNSPRRARSVASQ---SIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEIL  727
             CA       S  R+ S ASQ   +++ YT  +     +  S  + AIPTNF+ S+T E +
Sbjct  740   CA---VPPVSMFRSYS-ASQFQLAVLNYTSPI-VVTPINSSGFTAAIPTNFSFSLTQEYI  794

Query  728   PVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQ  787
               S+ K +VDC  Y+C   T C  LL++YG FC+++N+AL G  + QD++   +++ +K 
Sbjct  795   ETSIQKVTVDCKQYVCNGFTRCEKLLVEYGQFCSKINQALHGANLRQDESVYSLYSNIKT  854

Query  788   IY-KTPPIKDFGGFNFSQI-LPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCL--GD  843
                +T      G FN + + +P     S RS IEDLLF+KVT+AD G+++ Y DC+  G 
Sbjct  855   TSTQTLEYGLNGDFNLTLLQVPQIGGSSYRSAIEDLLFDKVTIADPGYMQGYDDCMKQGP  914

Query  844   IAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMA  903
              +ARDLICAQ  +G  VLPPL    M A YTS+LL     +GWT G  +   IPFA  M 
Sbjct  915   QSARDLICAQYVSGYKVLPPLYDPNMEAAYTSSLLGSIAGAGWTAGLSSFAAIPFAQSMF  974

Query  904   YRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLV  963
             YR NG+G+TQ VL ENQKLIAN+FN A+G +Q   +++  A  K+QD VN NAQAL+ L 
Sbjct  975   YRLNGVGITQQVLSENQKLIANKFNQALGAMQTGFTTSNLAFSKVQDAVNANAQALSKLA  1034

Query  964   KQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASAN  1023
              +LS+ FGAISS ++DIL+RLD VE + QIDRLI GRL SL  +V+QQL+R+     SA 
Sbjct  1035  SELSNTFGAISSSISDILARLDTVEQDAQIDRLINGRLTSLNAFVSQQLVRSETAARSAQ  1094

Query  1024  LAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICH  1083
             LA+ K++ECV  QSKR  FCG G H++SF  +AP+G  F HV YVP    N T A  +C+
Sbjct  1095  LASDKVNECVKSQSKRNGFCGSGTHIVSFVVNAPNGFYFFHVGYVPTNYTNVTAAYGLCN  1154

Query  1084  DGKAHF---PREGVFVSN-------GTHWFVTQRNFYEPQIITTDNT-FVSGNCDVVIGI  1132
                      P +G F++N        T W+ T  +F++P+ IT  N+ +VS   DV    
Sbjct  1155  HNNPPLCIAPIDGYFITNQTTTYSVDTEWYYTGSSFFKPEPITQANSRYVSS--DVKFEK  1212

Query  1133  VNNTVYDPL---QPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEV  1189
             + N +  PL     ++D FK+EL+++FKN TS   +  +IS IN +++++  E+  L EV
Sbjct  1213  LENNLPPPLLENSTDVD-FKDELEEFFKNVTSHGPNFAEISKINTTLLDLSDEMAILQEV  1271

Query  1190  AKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCS  1249
              K LN+S IDL+ELG Y  Y KWPWYIWLGFIAGL+A+++    L C T C +   G   
Sbjct  1272  VKQLNDSYIDLKELGNYTYYNKWPWYIWLGFIAGLVALLLCVFFLLCCTGCGTSCLGKMK  1331

Query  1250  CGSCC-KFDEDDSEPV  1264
             C +CC  ++E D E +
Sbjct  1332  CKNCCDSYEEYDVEKI  1347


>sp|K9N5Q8|SPIKE_MERS1 Spike glycoprotein OS=Middle East respiratory 
syndrome-related coronavirus (isolate United Kingdom/H123990006/2012) 
OX=1263720 GN=S PE=1 SV=1
Length=1353

 Score = 554 bits (1427),  Expect = 1e-173, Method: Compositional matrix adjust.
 Identities = 372/1057 (35%), Positives = 548/1057 (52%), Gaps = 76/1057 (7%)

Query  263   AAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQP  322
             AA+YV  LQP TFLL ++ +G I  A+DC  + LS+  C+ +SF VE G+Y  S+F  +P
Sbjct  311   AAFYVYKLQPLTFLLDFSVDGYIRRAIDCGFNDLSQLHCSYESFDVESGVYSVSSFEAKP  370

Query  323   TESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGV  382
             + S+V        C F  + + T    VY + R   +NC  + + L +  S + F C  +
Sbjct  371   SGSVVEQAEGVE-CDFSPLLSGTP-PQVYNFKRLVFTNCNYNLTKLLSLFSVNDFTCSQI  428

Query  383   SPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVI-AWNSNNL  441
             SP  +   C++++  D F         ++    G I+ +NYK       C+I A   +NL
Sbjct  429   SPAAIASNCYSSLILDYFSYPLSMKSDLSVSSAGPISQFNYKQSFSNPTCLILATVPHNL  488

Query  442   DSKVGG-NYNYLYRLFRKSNLKPFERDISTEIYQAGS----TPCNGV------EGFNCYF  490
              +      Y+Y+ +  R      F  D  TE+ Q  +    +PC  +      E  + Y 
Sbjct  489   TTITKPLKYSYINKCSR------FLSDDRTEVPQLVNANQYSPCVSIVPSTVWEDGDYYR  542

Query  491   ----PLQSYGFQPTNGVGYQPYRVVVLSFELLHAPAT----VCGPKKSTNLVK-----NK  537
                 PL+  G+   +G        + + F +     T    VC   +  N  K       
Sbjct  543   KQLSPLEGGGWLVASGSTVAMTEQLQMGFGITVQYGTDTNSVCPKLEFANDTKIASQLGN  602

Query  538   CVNFNFNGLTGTGVLTESNKKFLPFQQFGRDI-ADTTDAVRDPQTLEILDITPCSFGGVS  596
             CV ++  G++G GV        +  Q+F  D   +      D      L    C    VS
Sbjct  603   CVEYSLYGVSGRGVFQNCTAVGVRQQRFVYDAYQNLVGYYSDDGNYYCL--RACVSVPVS  660

Query  597   VITPGTNTSNQVAVLYQDVNCTEVPVAI--HADQLTPTWRVYSTGSNVFQTRAGCLIGAE  654
             VI      ++  A L+  V C  +   +  ++       +   +     QT  GC++G  
Sbjct  661   VIYDKETKTH--ATLFGSVACEHISSTMSQYSRSTRSMLKRRDSTYGPLQTPVGCVLGL-  717

Query  655   HVNNSY---ECDIPIGAGICASYQT-QTNSPRRARSVASQSIIAYTMSLGAENSVAYSNN  710
              VN+S    +C +P+G  +CA   T  T +PR  RSV  +  +A +++      V   N+
Sbjct  718   -VNSSLFVEDCKLPLGQSLCALPDTPSTLTPRSVRSVPGEMRLA-SIAFNHPIQVDQLNS  775

Query  711   S---IAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRAL  767
             S   ++IPTNF+  VT E +  ++ K +VDC  Y+C    +C  LL +YG FC+++N+AL
Sbjct  776   SYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQLLREYGQFCSKINQAL  835

Query  768   TGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGG-FNFSQILP---DPSKPSKRSFIEDLLF  823
              G  + QD + + +FA VK    +P I  FGG FN + + P        S RS IEDLLF
Sbjct  836   HGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPVSISTGSRSARSAIEDLLF  895

Query  824   NKVTLADAGFIKQYGDCL--GDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGT  881
             +KVT+AD G+++ Y DC+  G  +ARDLICAQ   G  VLPPL+   M A YTS+LL   
Sbjct  896   DKVTIADPGYMQGYDDCMQQGPASARDLICAQYVAGYKVLPPLMDVNMEAAYTSSLLGSI  955

Query  882   ITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSST  941
                GWT G  +   IPFA  + YR NG+G+TQ VL ENQKLIAN+FN A+G +Q   ++T
Sbjct  956   AGVGWTAGLSSFAAIPFAQSIFYRLNGVGITQQVLSENQKLIANKFNQALGAMQTGFTTT  1015

Query  942   ASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRL  1001
               A  K+QD VN NAQAL+ L  +LS+ FGAIS+ + DI+ RLD +E + QIDRLI GRL
Sbjct  1016  NEAFHKVQDAVNNNAQALSKLASELSNTFGAISASIGDIIQRLDVLEQDAQIDRLINGRL  1075

Query  1002  QSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVV  1061
              +L  +V QQL+R+     SA LA  K++ECV  QSKR  FCG+G H++SF  +AP+G+ 
Sbjct  1076  TTLNAFVAQQLVRSESAALSAQLAKDKVNECVKAQSKRSGFCGQGTHIVSFVVNAPNGLY  1135

Query  1062  FLHVTYVPAQEKNFTTAPAICHDGKAH---FPREGVFV-SNGT----HWFVTQRNFYEPQ  1113
             F+HV Y P+      +A  +C          P  G F+ +N T     W  T  +FY P+
Sbjct  1136  FMHVGYYPSNHIEVVSAYGLCDAANPTNCIAPVNGYFIKTNNTRIVDEWSYTGSSFYAPE  1195

Query  1114  IITTDNTFVSGNCDVVIGIVNNTVYDPLQPEL------DSFKEELDKYFKNHTSPDVDLG  1167
              IT+ NT       V   +    +   L P L        F++ELD++FKN ++   + G
Sbjct  1196  PITSLNTKY-----VAPQVTYQNISTNLPPPLLGNSTGIDFQDELDEFFKNVSTSIPNFG  1250

Query  1168  DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAI  1227
              ++ IN +++++  E+  L +V K LNES IDL+ELG Y  Y KWPWYIWLGFIAGL+A+
Sbjct  1251  SLTQINTTLLDLTYEMLSLQQVVKALNESYIDLKELGNYTYYNKWPWYIWLGFIAGLVAL  1310

Query  1228  VMVTIMLCCMTSCCSCLKGCCSCGSCC-KFDEDDSEP  1263
              +    + C T C +   G   C  CC +++E D EP
Sbjct  1311  ALCVFFILCCTGCGTNCMGKLKCNRCCDRYEEYDLEP  1347


>sp|P11225|SPIKE_CVMJH Spike glycoprotein OS=Murine coronavirus 
(strain JHM) OX=11144 GN=S PE=1 SV=1
Length=1235

 Score = 526 bits (1354),  Expect = 3e-164, Method: Compositional matrix adjust.
 Identities = 421/1347 (31%), Positives = 623/1347 (46%), Gaps = 191/1347 (14%)

Query  1     MFVFLVLLP--------LVSSQCVNLTTRTQLPPAYTN-----SFTRGVYYP-DKVFRSS  46
             +FVF++LLP            Q VN        P+ +      S  RG YY  D+V+ ++
Sbjct  2     LFVFILLLPSCLGYIGDFRCIQTVNYNGNNASAPSISTEAVDVSKGRGTYYVLDRVYLNA  61

Query  47    VLHSTQDLFLPFFSNVTWFHAIHVSGTN--GTKRFDNPVL-PFNDGVYF-----------  92
              L  T   + P   + + +  + ++GTN      F  P L  FNDG++            
Sbjct  62    TLLLTG--YYPV--DGSNYRNLALTGTNTLSLTWFKPPFLSEFNDGIFAKVQNLKTNTPT  117

Query  93    -ASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKS  151
              A++    I+ G +FG T  S T  L   NN   ++  VC +  C  P+     + N   
Sbjct  118   GATSYFPTIVIGSLFGNT--SYTVVLEPYNNI--IMASVCTYTICQLPYTPCKPNTNGNR  173

Query  152   ----W-MESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSK  206
                 W  + +  +     N TF  V+ P+L               F F    G F  Y  
Sbjct  174   VIGFWHTDVKPPICLLKRNFTFN-VNAPWLY--------------FHFYQQGGTFYAYYA  218

Query  207   HTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAG---AA  263
               P           SA   L  + IG  +T++  L  +     TP       TAG   A 
Sbjct  219   DKP-----------SATTFLFSVYIGDILTQYFVLPFI----CTP-------TAGSTLAP  256

Query  264   AYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPT  323
              Y+V  L  R +L  +NE G IT AVDCA   +SE KC  +S     G+Y  S + VQP 
Sbjct  257   LYWVTPLLKRQYLFNFNEKGVITSAVDCASSYISEIKCKTQSLLPSTGVYDLSGYTVQPV  316

Query  324   ESIVR-FPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGV  382
               + R  PN+ + C   E   A    S   W R+   NC  + S L       +  C  +
Sbjct  317   GVVYRRVPNLPD-CKIEEWLTAKSVPSPLNWERRTFQNCNFNLSSLLRYVQAESLSCNNI  375

Query  383   SPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLD  442
               +K+  +CF +V  D F I       +  G +G +   NYK+    T C          
Sbjct  376   DASKVYGMCFGSVSVDKFAIPRSRQIDLQIGNSGFLQTANYKIDTAATSC----------  425

Query  443   SKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNG  502
                      LY    K+N+                     +  +N     + YGF+  + 
Sbjct  426   --------QLYYSLPKNNVT--------------------INNYNPSSWNRRYGFKVND-  456

Query  503   VGYQPYRVVVLSFELLHA--PATVCGPK---KSTNLVKNKCVNFNFNGLTGTGVLTESNK  557
                   R  + +  LL+     T C       +T +    CV ++  G+TG GV  E   
Sbjct  457   ------RCQIFANILLNGINSGTTCSTDLQLPNTEVATGVCVRYDLYGITGQGVFKEVKA  510

Query  558   KFL-PFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVN  616
              +   +Q    D+    +  RD  T +   I  C  G VS        + + A+LY+++N
Sbjct  511   DYYNSWQALLYDVNGNLNGFRDLTTNKTYTIRSCYSGRVSAAY--HKEAPEPALLYRNIN  568

Query  617   CTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY--ECDIPIGAGICASY  674
             C+ V     + +  P         N F +  GC++ A++  +     C++ +GAG+C  Y
Sbjct  569   CSYVFTNNISREENPL--------NYFDSYLGCVVNADNRTDEALPNCNLRMGAGLCVDY  620

Query  675   QTQTNSPRRARSVASQSIIAYT----MSLGAENSVAYSNN--SIAIPTNFTISVTTEILP  728
                    RRAR   S      T    M +   +SV        + IPTNFTI    E + 
Sbjct  621   SKS----RRARRSVSTGYRLTTFEPYMPMLVNDSVQSVGGLYEMQIPTNFTIGHHEEFIQ  676

Query  729   VSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQ-  787
             +   K ++DC  ++CGD+  C   L++YGSFC  +N  L  +    D    +V + + Q 
Sbjct  677   IRAPKVTIDCAAFVCGDNAACRQQLVEYGSFCDNVNAILNEVNNLLDNMQLQVASALMQG  736

Query  788   ---IYKTP-----PIKDFGGFNFSQILP-----------DPSKPSKRSFIEDLLFNKVTL  828
                  + P     PI D    NFS +L             PS    RS IEDLLF+KV L
Sbjct  737   VTISSRLPDGISGPIDDI---NFSPLLGCIGSTCAEDGNGPSAIRGRSAIEDLLFDKVKL  793

Query  829   ADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTF  888
             +D GF++ Y +C G    RDL+C Q FNG+ VLPP+L++  I+ YT+   A  +   WT 
Sbjct  794   SDVGFVEAYNNCTGGQEVRDLLCVQSFNGIKVLPPVLSESQISGYTAGATAAAMFPPWTA  853

Query  889   GAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKL  948
              AG    +PF++ + YR NG+GVT NVL ENQK+IA+ FN+A+G IQ+   +T SALGK+
Sbjct  854   AAG----VPFSLNVQYRINGLGVTMNVLSENQKMIASAFNNALGAIQEGFDATNSALGKI  909

Query  949   QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYV  1008
             Q VVN NA+ALN L+ QLS+ FGAIS+ L +IL+RLD VEA+ QIDRLI GRL +L  Y+
Sbjct  910   QSVVNANAEALNNLLNQLSNRFGAISASLQEILTRLDAVEAKAQIDRLINGRLTALNAYI  969

Query  1009  TQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYV  1068
             ++QL  +  I+ SA  A  K++ECV  Q+ R++FCG G H++S  Q+AP+G+ F+H +YV
Sbjct  970   SKQLSDSTLIKFSAAQAIEKVNECVKSQTTRINFCGNGNHILSLVQNAPYGLCFIHFSYV  1029

Query  1069  PAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCD  1127
             P   K    +P +C  G +   P+ G FV +   W  T  N+Y P+ IT  N+    +C 
Sbjct  1030  PTSFKTANVSPGLCISGDRGLAPKAGYFVQDNGEWKFTGSNYYYPEPITDKNSVAMISCA  1089

Query  1128  VVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTS--PDVDLGDISGINASVVNIQKEIDR  1185
             V          +   P L  FKEELDK+FKN TS  PD+ L D   +N + +++  E++R
Sbjct  1090  VNYTKAPEVFLNNSIPNLPDFKEELDKWFKNQTSIAPDLSL-DFEKLNVTFLDLTYEMNR  1148

Query  1186  LNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLK  1245
             + +  K LNES I+L+E+G YE Y+KWPWY+WL  + GL  + +  ++            
Sbjct  1149  IQDAIKKLNESYINLKEVGTYEMYVKWPWYVWL--LIGLAGVAVCVLLFFICCCTGCGSC  1206

Query  1246  GCCSCGSCC-KFDEDDSEPVLKGVKLH  1271
                 CGSCC ++       V+  +  H
Sbjct  1207  CFRKCGSCCDEYGGHQDSIVIHNISAH  1233


>sp|A3EX94|SPIKE_BCHK4 Spike glycoprotein OS=Bat coronavirus HKU4 
OX=694007 GN=S PE=1 SV=1
Length=1352

 Score = 499 bits (1284),  Expect = 6e-153, Method: Compositional matrix adjust.
 Identities = 307/754 (41%), Positives = 430/754 (57%), Gaps = 37/754 (5%)

Query  537   KCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVS  596
             KCV+++  G+TG GV        +  Q+F  D  D               + PC    VS
Sbjct  607   KCVDYSLYGVTGRGVFQNCTAVGVKQQRFVYDSFDNLVGYYSDDG-NYYCVRPCVSVPVS  665

Query  597   VITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNV-FQTRAGCLIGAEH  655
             VI     ++N  A L+  V C  V   +          +    SN+  QT  GC+IG   
Sbjct  666   VIY--DKSTNLHATLFGSVACEHVTTMMSQFSRLTQSNLRRRDSNIPLQTAVGCVIGLS-  722

Query  656   VNNSY---ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSI  712
              NNS    +C +P+G  +CA     T     A S    +++ YT  +     +  S  + 
Sbjct  723   -NNSLVVSDCKLPLGQSLCAVPPVSTFRSYSA-SQFQLAVLNYTSPI-VVTPINSSGFTA  779

Query  713   AIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAV  772
             AIPTNF+ SVT E +  S+ K +VDC  Y+C   T C  LL++YG FC+++N+AL G  +
Sbjct  780   AIPTNFSFSVTQEYIETSIQKVTVDCKQYVCNGFTRCEKLLVEYGQFCSKINQALHGANL  839

Query  773   EQDKNTQEVFAQVKQIY-KTPPIKDFGGFNFSQILPDP----SKPSKRSFIEDLLFNKVT  827
              QD++   +++ +K    +T      G FN + +L  P    S  S RS IEDLLF+KVT
Sbjct  840   RQDESVYSLYSNIKTTSTQTLEYGLNGDFNLT-LLQVPQIGGSSSSYRSAIEDLLFDKVT  898

Query  828   LADAGFIKQYGDCL--GDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSG  885
             +AD G+++ Y DC+  G  +ARDLICAQ  +G  VLPPL    M A YTS+LL     +G
Sbjct  899   IADPGYMQGYDDCMKQGPQSARDLICAQYVSGYKVLPPLYDPNMEAAYTSSLLGSIAGAG  958

Query  886   WTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASAL  945
             WT G  +   IPFA  M YR NG+G+TQ VL ENQKLIAN+FN A+G +Q   +++  A 
Sbjct  959   WTAGLSSFAAIPFAQSMFYRLNGVGITQQVLSENQKLIANKFNQALGAMQTGFTTSNLAF  1018

Query  946   GKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQ  1005
              K+QD VN NAQAL+ L  +LS+ FGAISS ++DIL+RLD VE + QIDRLI GRL SL 
Sbjct  1019  SKVQDAVNANAQALSKLASELSNTFGAISSSISDILARLDTVEQDAQIDRLINGRLISLN  1078

Query  1006  TYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHV  1065
              +V+QQL+R+     SA LA+ K++ECV  QSKR  FCG G H++SF  +AP+G  F HV
Sbjct  1079  AFVSQQLVRSETAARSAQLASDKVNECVKSQSKRNGFCGSGTHIVSFVVNAPNGFYFFHV  1138

Query  1066  TYVPAQEKNFTTAPAICHDGKAHF---PREGVFVSN-------GTHWFVTQRNFYEPQII  1115
              YVP    N T A  +C++        P +G F++N        T W+ T  +FY+P+ I
Sbjct  1139  GYVPTNYTNVTAAYGLCNNNNPPLCIAPIDGYFITNQTTTYSVDTEWYYTGSSFYKPEPI  1198

Query  1116  TTDNT-FVSGNCDVVIGIVNNTVYDPL---QPELDSFKEELDKYFKNHTSPDVDLGDISG  1171
             T  N+ +VS   DV    + N +  PL     ++D FK+EL+++FKN TS   +  +IS 
Sbjct  1199  TQANSRYVSS--DVKFDKLENNLPPPLLENSTDVD-FKDELEEFFKNVTSHGPNFAEISK  1255

Query  1172  INASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVT  1231
             IN +++++  E+  L EV K LN+S IDL+ELG Y  Y KWPWY+WLGFIAGL+A+++  
Sbjct  1256  INTTLLDLSDEMAMLQEVVKQLNDSYIDLKELGNYTYYNKWPWYVWLGFIAGLVALLLCV  1315

Query  1232  IMLCCMTSCCSCLKGCCSCGSCC-KFDEDDSEPV  1264
               L C T C +   G   C +CC  ++E D E +
Sbjct  1316  FFLLCCTGCGTSCLGKMKCKNCCDSYEEYDVEKI  1349


 Score = 95.5 bits (236),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 62/202 (31%), Positives = 92/202 (46%), Gaps = 15/202 (7%)

Query  232  GINITRFQTL---------LALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN  282
            G N+ RF TL           + RS+ +  +    W    AA+YV  L   T+LL ++ +
Sbjct  280  GGNMFRFATLPVYEGIKYYTVIPRSFRSKANKREAW----AAFYVYKLHQLTYLLDFSVD  335

Query  283  GTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVF  342
            G I  A+DC  D LS+  C+  SF V+ G+Y  S++    T + +  PN T  C F  + 
Sbjct  336  GYIRRAIDCGHDDLSQLHCSYTSFEVDTGVYSVSSYEASATGTFIEQPNATE-CDFSPML  394

Query  343  NATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVI  402
                   VY + R   SNC  + + L +  +   F C G+SP  +   C++ +  D F  
Sbjct  395  TGVA-PQVYNFKRLVFSNCNYNLTKLLSLFAVDEFSCNGISPDSIARGCYSTLTVDYFAY  453

Query  403  RGDEVRQIAPGQTGKIADYNYK  424
                   I PG  G I  YNYK
Sbjct  454  PLSMKSYIRPGSAGNIPLYNYK  475


>sp|P25192|SPIKE_CVBLY Spike glycoprotein OS=Bovine coronavirus 
(strain LY-138) OX=11131 GN=S PE=3 SV=1
Length=1363

 Score = 485 bits (1249),  Expect = 6e-148, Method: Compositional matrix adjust.
 Identities = 286/759 (38%), Positives = 418/759 (55%), Gaps = 41/759 (5%)

Query  528   KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD  586
             K +T+++   CVN++  G+TG G+  E N  +   +Q    D        RD  T     
Sbjct  621   KSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFM  680

Query  587   ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTR  646
             I  C  G VS        S++ A+L++++ C  V     + QL P         N F + 
Sbjct  681   IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSY  730

Query  647   AGCLIGAEHVNNS--YECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS  704
              GC++ A++  +S    CD+ +G+G C  Y T+    RR+R   +             NS
Sbjct  731   LGCVVNADNSTSSAVQTCDLTVGSGYCVDYSTK----RRSRRAITTGYRFTNFEPFTVNS  786

Query  705   VAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGS  758
             V  S         I IP+ FTI    E + +S  K ++DC+ ++CGD   C + L++YGS
Sbjct  787   VNDSLEPVGGLYEIQIPSEFTIGNMEEFIQISSPKVTIDCSAFVCGDYAACKSQLVEYGS  846

Query  759   FCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN-----FSQIL----PD  808
             FC  +N  LT +    D    +V  + +  +  +  +KD   FN     FS +L     D
Sbjct  847   FCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSD  906

Query  809   PSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDE  868
              +K S RS IEDLLF+KV L+D GF++ Y +C G    RDLIC Q +NG+ VLPPLL++ 
Sbjct  907   CNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSEN  966

Query  869   MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFN  928
              I+ YT A  + ++   W+  AG    +PF + + YR NGIGVT +VL +NQKLIAN FN
Sbjct  967   QISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFN  1022

Query  929   SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVE  988
             +A+  IQ+   +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +E
Sbjct  1023  NALDAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALE  1082

Query  989   AEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH  1048
             A+ QIDRLI GRL +L  YV+QQL  +  ++ SA  A  K++ECV  QS R++FCG G H
Sbjct  1083  AQAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNH  1142

Query  1049  LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQR  1107
             ++S  Q+AP+G+ F+H +YVP +      +P +C  G +   P+ G FV+    W  T  
Sbjct  1143  IISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGS  1202

Query  1108  NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG  1167
              +Y P+ IT +N  V   C V      + + +   P L  FKEELD++FKN TS   DL 
Sbjct  1203  GYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLPDFKEELDQWFKNQTSVAPDLS  1262

Query  1168  DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAI  1227
              +  IN + +++Q E++RL E  K LN+S I+L+++G YE Y+KWPWY+WL  + GL  +
Sbjct  1263  -LDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGLAGV  1319

Query  1228  VMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK  1266
              M+ ++                CG CC       E V+K
Sbjct  1320  AMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQELVIK  1358


 Score = 94.0 bits (232),  Expect = 7e-18, Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 5/195 (3%)

Query  244  LHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTL  303
            L   Y+ P   +S  T     Y+V  L  + +LL +N++G I +AVDC  D +SE KC  
Sbjct  242  LSHYYVMPLTCNSAMTL---EYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKT  298

Query  304  KSFTVEKGIYQTSNFRVQPTESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCV  362
             S     G+Y+ + + VQP   +  R PN+ + C      N     S   W RK  SNC 
Sbjct  299  LSIAPSTGVYELNGYTVQPIADVYRRIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCN  357

Query  363  ADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYN  422
             + S L +     +F C  +   K+  +CF+++  D F I       +  G  G +  +N
Sbjct  358  FNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFN  417

Query  423  YKLPDDFTGCVIAWN  437
            Y++    T C + +N
Sbjct  418  YRIDTTATSCQLYYN  432


>sp|Q9QAQ8|SPIKE_CVBOK Spike glycoprotein OS=Bovine coronavirus 
(strain OK-0514) OX=231432 GN=S PE=3 SV=1
Length=1363

 Score = 485 bits (1249),  Expect = 6e-148, Method: Compositional matrix adjust.
 Identities = 286/759 (38%), Positives = 417/759 (55%), Gaps = 41/759 (5%)

Query  528   KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD  586
             K +T+++   CVN++  G+TG G+  E N  +   +Q    D        RD  T     
Sbjct  621   KSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFM  680

Query  587   ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTR  646
             I  C  G VS        S++ A+L++++ C  V     + QL P         N F + 
Sbjct  681   IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSY  730

Query  647   AGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS  704
              GC++ A++  +S    CD+ +G+G C  Y T+    RR+R   +             NS
Sbjct  731   LGCVVNADNSTSSVVQTCDLTVGSGYCVDYSTK----RRSRRSITTGYRFTNFEPFTVNS  786

Query  705   VAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGS  758
             V  S         I IP+ FTI    E +  S  K ++DC+ ++CGD   C + L++YGS
Sbjct  787   VNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGS  846

Query  759   FCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN-----FSQIL----PD  808
             FC  +N  LT +    D    +V  + +  +  +  +KD   FN     FS +L     D
Sbjct  847   FCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSD  906

Query  809   PSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDE  868
              +K S RS IEDLLF+KV L+D GF++ Y +C G    RDLIC Q +NG+ VLPPLL++ 
Sbjct  907   CNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSEN  966

Query  869   MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFN  928
              I+ YT A  + ++   W+  AG    +PF + + YR NGIGVT +VL +NQKLIAN FN
Sbjct  967   QISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFN  1022

Query  929   SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVE  988
             +A+G IQ+   +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +E
Sbjct  1023  NALGAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALE  1082

Query  989   AEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH  1048
             A+ QIDRLI GRL +L  YV+QQL  +  ++ SA  A  K++ECV  QS R++FCG G H
Sbjct  1083  AQAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNH  1142

Query  1049  LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQR  1107
             ++S  Q+AP+G+ F+H +YVP +      +P +C  G +   P+ G FV+    W  T  
Sbjct  1143  IISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGS  1202

Query  1108  NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG  1167
              +Y P+ IT +N  V   C V      + + +   P L  FKEELD++FKN TS   DL 
Sbjct  1203  GYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLPDFKEELDQWFKNQTSVAPDL-  1261

Query  1168  DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAI  1227
              +  IN + +++Q E++RL E  K LN+S I+L+++G YE Y+KWPWY+WL  + G   +
Sbjct  1262  SLDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGV  1319

Query  1228  VMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK  1266
              M+ ++                CG CC       E V+K
Sbjct  1320  AMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQELVIK  1358


 Score = 93.6 bits (231),  Expect = 8e-18, Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 5/195 (3%)

Query  244  LHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTL  303
            L   Y+ P   +S  T     Y+V  L  + +LL +N++G I +AVDC  D +SE KC  
Sbjct  242  LSHYYVMPLTCNSAMTL---EYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKT  298

Query  304  KSFTVEKGIYQTSNFRVQPTESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCV  362
             S     G+Y+ + + VQP   +  R PN+ + C      N     S   W RK  SNC 
Sbjct  299  LSIAPSTGVYELNGYTVQPIADVYRRIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCN  357

Query  363  ADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYN  422
             + S L +     +F C  +   K+  +CF+++  D F I       +  G  G +  +N
Sbjct  358  FNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFN  417

Query  423  YKLPDDFTGCVIAWN  437
            Y++    T C + +N
Sbjct  418  YRIDTTATSCQLYYN  432


>sp|Q91A26|SPIKE_CVBEN Spike glycoprotein OS=Bovine coronavirus 
(strain 98TXSF-110-ENT) OX=233262 GN=S PE=3 SV=1
Length=1363

 Score = 484 bits (1247),  Expect = 1e-147, Method: Compositional matrix adjust.
 Identities = 286/759 (38%), Positives = 417/759 (55%), Gaps = 41/759 (5%)

Query  528   KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD  586
             K +T+++   CVN++  G+TG G+  E N  +   +Q    D        RD  T     
Sbjct  621   KSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFM  680

Query  587   ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTR  646
             I  C  G VS        S++ A+L++++ C  V     + QL P         N F + 
Sbjct  681   IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSY  730

Query  647   AGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS  704
              GC++ A++  +S    CD+ +G+G C  Y T+    RR+R   +             NS
Sbjct  731   LGCVVNADNSTSSVVQTCDLTVGSGYCVDYSTK----RRSRRSITTGYRFTNFEPFTVNS  786

Query  705   VAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGS  758
             V  S         I IP+ FTI    E +  S  K ++DC+ ++CGD   C + L++YGS
Sbjct  787   VNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGS  846

Query  759   FCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN-----FSQIL----PD  808
             FC  +N  LT +    D    +V  + +  +  +  +KD   FN     FS +L     D
Sbjct  847   FCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSD  906

Query  809   PSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDE  868
              +K S RS IEDLLF+KV L+D GF++ Y +C G    RDLIC Q +NG+ VLPPLL++ 
Sbjct  907   CNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSEN  966

Query  869   MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFN  928
              I+ YT A  + ++   W+  AG    +PF + + YR NGIGVT +VL +NQKLIAN FN
Sbjct  967   QISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFN  1022

Query  929   SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVE  988
             +A+G IQ+   +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +E
Sbjct  1023  NALGAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALE  1082

Query  989   AEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH  1048
             A+ QIDRLI GRL +L  YV+QQL  +  ++ SA  A  K++ECV  QS R++FCG G H
Sbjct  1083  AQAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNH  1142

Query  1049  LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQR  1107
             ++S  Q+AP+G+ F+H +YVP +      +P +C  G +   P+ G FV+    W  T  
Sbjct  1143  IISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGS  1202

Query  1108  NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG  1167
              +Y P+ IT +N  V   C V      + + +   P L  FKEELD++FKN TS   DL 
Sbjct  1203  GYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLPYFKEELDQWFKNQTSVAPDL-  1261

Query  1168  DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAI  1227
              +  IN + +++Q E++RL E  K LN+S I+L+++G YE Y+KWPWY+WL  + G   +
Sbjct  1262  SLDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGV  1319

Query  1228  VMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK  1266
              M+ ++                CG CC       E V+K
Sbjct  1320  AMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQELVIK  1358


 Score = 92.8 bits (229),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 5/195 (3%)

Query  244  LHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTL  303
            L   Y+ P   +S  T     Y+V  L  + +LL +N++G I +AVDC  D +SE KC  
Sbjct  242  LSHYYVMPLTCNSALTL---EYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKT  298

Query  304  KSFTVEKGIYQTSNFRVQPTESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCV  362
             S     G+Y+ + + VQP   +  R PN+ + C      N     S   W RK  SNC 
Sbjct  299  LSIAPSTGVYELNGYTVQPIADVYRRIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCN  357

Query  363  ADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYN  422
             + S L +     +F C  +   K+  +CF+++  D F I       +  G  G +  +N
Sbjct  358  FNMSSLMSFIQAYSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFN  417

Query  423  YKLPDDFTGCVIAWN  437
            Y++    T C + +N
Sbjct  418  YRIDTTATSCQLYYN  432


>sp|Q8V436|SPIKE_CVBLU Spike glycoprotein OS=Bovine coronavirus 
(strain 98TXSF-110-LUN) OX=233264 GN=S PE=3 SV=1
Length=1363

 Score = 484 bits (1247),  Expect = 1e-147, Method: Compositional matrix adjust.
 Identities = 285/759 (38%), Positives = 416/759 (55%), Gaps = 41/759 (5%)

Query  528   KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD  586
             K +T+++   CVN++  G+TG G+  E N  +   +Q    D        RD  T     
Sbjct  621   KSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFM  680

Query  587   ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTR  646
             I  C  G VS        S++ A+L++++ C  V     + QL P         N F + 
Sbjct  681   IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSY  730

Query  647   AGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS  704
              GC++ A++  +S    CD+ +G+G C  Y T+    RR+R   +             NS
Sbjct  731   LGCVVNADNSTSSVVQTCDLTVGSGYCVDYSTK----RRSRRSITTGYRFTNFEPFTVNS  786

Query  705   VAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGS  758
             V  S         I IP+ FTI    E +  S  K ++DC+ ++CGD   C + L++YGS
Sbjct  787   VNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGS  846

Query  759   FCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN-----FSQIL----PD  808
             FC  +N  LT +    D    +V  + +  +  +  +KD   FN     FS +L     D
Sbjct  847   FCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSD  906

Query  809   PSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDE  868
              +K S RS IEDLLF+KV L+D GF++ Y +C G    RDLIC Q +NG+ VLPPLL++ 
Sbjct  907   CNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSEN  966

Query  869   MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFN  928
              I+ YT A  + ++   W+  AG    +PF + + YR NGIGVT +VL +NQKLIAN FN
Sbjct  967   QISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFN  1022

Query  929   SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVE  988
             +A+G IQ+   +T SAL K+Q VVN NA+ LN L++QLS+ FGAISS L +ILSRLD +E
Sbjct  1023  NALGAIQEGFDATNSALVKIQAVVNANAETLNNLLQQLSNRFGAISSSLQEILSRLDALE  1082

Query  989   AEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH  1048
             A+ QIDRLI GRL +L  YV+QQL  +  ++ SA  A  K++ECV  QS R++FCG G H
Sbjct  1083  AQAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNH  1142

Query  1049  LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAIC-HDGKAHFPREGVFVSNGTHWFVTQR  1107
             ++S  Q+AP+G+ F+H +YVP +      +P +C   G+   P+ G FV+    W  T  
Sbjct  1143  IISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGGRGIAPKSGYFVNVNNTWMFTGS  1202

Query  1108  NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG  1167
              +Y P+ IT +N  V   C V      + + +   P L  FKEELD++FKN TS   DL 
Sbjct  1203  GYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLPDFKEELDQWFKNQTSVAPDL-  1261

Query  1168  DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAI  1227
              +  IN + +++Q E++RL E  K LN+S I+L+++G YE Y+KWPWY+WL  + G   +
Sbjct  1262  SLDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGV  1319

Query  1228  VMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK  1266
              M+ ++                CG CC       E V+K
Sbjct  1320  AMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQELVIK  1358


 Score = 93.6 bits (231),  Expect = 8e-18, Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 5/195 (3%)

Query  244  LHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTL  303
            L   Y+ P   +S  T     Y+V  L  + +LL +N++G I +AVDC  D +SE KC  
Sbjct  242  LSHYYVMPLTCNSALTL---EYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKT  298

Query  304  KSFTVEKGIYQTSNFRVQPTESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCV  362
             S     G+Y+ + + VQP   +  R PN+ + C      N     S   W RK  SNC 
Sbjct  299  LSIAPSTGVYELNGYTVQPIADVYRRIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCN  357

Query  363  ADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYN  422
             + S L +     +F C  +   K+  +CF+++  D F I       +  G  G +  +N
Sbjct  358  FNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFN  417

Query  423  YKLPDDFTGCVIAWN  437
            Y++    T C + +N
Sbjct  418  YRIDTTATSCQLYYN  432


>sp|Q9QAR5|SPIKE_CVBLS Spike glycoprotein OS=Bovine coronavirus 
(strain LSU-94LSS-051) OX=233261 GN=S PE=3 SV=1
Length=1363

 Score = 484 bits (1245),  Expect = 2e-147, Method: Compositional matrix adjust.
 Identities = 286/759 (38%), Positives = 416/759 (55%), Gaps = 41/759 (5%)

Query  528   KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD  586
             K +T+++   CVN++  G+TG G+  E N  +   +Q    D        RD  T     
Sbjct  621   KSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFM  680

Query  587   ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTR  646
             I  C  G VS        S++ A+L+++  C  V     + QL P         N F + 
Sbjct  681   IRSCYSGRVSAAFHAN--SSEPALLFRNFKCNYVFNNTLSRQLQPI--------NYFDSY  730

Query  647   AGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS  704
              GC++ A++  +S    CD+ +G+G C  Y T+    RR+R   +             NS
Sbjct  731   LGCVVNADNSTSSVVQTCDLTVGSGYCVDYSTK----RRSRRSITTGYRFTNFEPFTVNS  786

Query  705   VAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGS  758
             V  S         I IP+ FTI    E +  S  K ++DC+ ++CGD   C + L++YGS
Sbjct  787   VNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGS  846

Query  759   FCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN-----FSQIL----PD  808
             FC  +N  LT +    D    +V  + +  +  +  +KD   FN     FS +L     D
Sbjct  847   FCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSD  906

Query  809   PSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDE  868
              +K S RS IEDLLF+KV L+D GF++ Y +C G    RDLIC Q +NG+ VLPPLL++ 
Sbjct  907   CNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSEN  966

Query  869   MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFN  928
              I+ YT A  + ++   W+  AG    +PF + + YR NGIGVT +VL +NQKLIAN FN
Sbjct  967   QISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFN  1022

Query  929   SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVE  988
             +A+G IQ+   +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +E
Sbjct  1023  NALGAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALE  1082

Query  989   AEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH  1048
             A+ QIDRLI GRL +L  YV+QQL  +  ++ SA  A  K++ECV  QS R++FCG G H
Sbjct  1083  AQAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNH  1142

Query  1049  LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQR  1107
             ++S  Q+AP+G+ F+H +YVP +      +P +C  G +   P+ G FV+    W  T  
Sbjct  1143  IISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGS  1202

Query  1108  NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG  1167
              +Y P+ IT +N  V   C V      + + +   P L  FKEELD++FKN TS   DL 
Sbjct  1203  GYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLPDFKEELDQWFKNQTSVAPDL-  1261

Query  1168  DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAI  1227
              +  IN + +++Q E++RL E  K LN+S I+L+++G YE Y+KWPWY+WL  + G   +
Sbjct  1262  SLDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGV  1319

Query  1228  VMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK  1266
              M+ ++                CG CC       E V+K
Sbjct  1320  AMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQELVIK  1358


 Score = 93.6 bits (231),  Expect = 8e-18, Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 5/195 (3%)

Query  244  LHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTL  303
            L   Y+ P   +S  T     Y+V  L  + +LL +N++G I +AVDC  D +SE KC  
Sbjct  242  LSHYYVMPLTCNSALTL---EYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKT  298

Query  304  KSFTVEKGIYQTSNFRVQPTESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCV  362
             S     G+Y+ + + VQP   +  R PN+ + C      N     S   W RK  SNC 
Sbjct  299  LSIAPSTGVYELNGYTVQPIADVYRRIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCN  357

Query  363  ADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYN  422
             + S L +     +F C  +   K+  +CF+++  D F I       +  G  G +  +N
Sbjct  358  FNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFN  417

Query  423  YKLPDDFTGCVIAWN  437
            Y++    T C + +N
Sbjct  418  YRIDTTATSCQLYYN  432


>sp|P25194|SPIKE_CVBV Spike glycoprotein OS=Bovine coronavirus 
(strain vaccine) OX=11134 GN=S PE=3 SV=1
Length=1363

 Score = 481 bits (1238),  Expect = 2e-146, Method: Compositional matrix adjust.
 Identities = 285/759 (38%), Positives = 415/759 (55%), Gaps = 41/759 (5%)

Query  528   KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD  586
             K +T+++   CVN++  G+TG G+  E N  +   +Q    D        RD  T     
Sbjct  621   KSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFM  680

Query  587   ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTR  646
             I  C  G VS        S++ A+L++++ C  V     + QL P         N F + 
Sbjct  681   IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSY  730

Query  647   AGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS  704
              GC++ A++  +S    CD+ +G+G C  Y T+    RR+R   +             NS
Sbjct  731   LGCVVNADNSTSSVVQTCDLTVGSGYCVDYSTK----RRSRRAITTGYRFTNFEPFTVNS  786

Query  705   VAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGS  758
             V  S         I IP+ FTI    E +  S  K ++DC+ ++CGD   C + L++YGS
Sbjct  787   VNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGS  846

Query  759   FCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN-----FSQIL----PD  808
             FC  +N  LT +    D    +V  + +  +  +  +KD   FN     FS +L     D
Sbjct  847   FCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSD  906

Query  809   PSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDE  868
              +K S RS IEDLLF+KV L+D GF++ Y +C G    RDLIC Q +NG+ VLPPLL+  
Sbjct  907   CNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSVN  966

Query  869   MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFN  928
              I+ YT A  + ++   W+  AG    +PF + + YR NGIGVT +VL +NQKLIAN FN
Sbjct  967   QISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFN  1022

Query  929   SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVE  988
             +A+  IQ+   +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +E
Sbjct  1023  NALDAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALE  1082

Query  989   AEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH  1048
             A+ QIDRLI GRL +L  YV+QQL  +  ++ SA  A  K++ECV  QS R++FCG G H
Sbjct  1083  AQAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNH  1142

Query  1049  LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQR  1107
             ++S  Q+AP+G+ F+H +YVP +      +P +C  G +   P+ G FV+    W  T  
Sbjct  1143  IISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGS  1202

Query  1108  NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG  1167
              +Y P+ IT +N  V   C V      + + +   P L  FKEELD++FKN TS   DL 
Sbjct  1203  GYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLHDFKEELDQWFKNQTSVAPDLS  1262

Query  1168  DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAI  1227
              +  IN + +++Q E++RL E  K LN+S I+L+++G YE Y+KWPWY+WL  + G   +
Sbjct  1263  -LDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGV  1319

Query  1228  VMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK  1266
              M+ ++                CG CC       E V+K
Sbjct  1320  AMLVLLFFICCCTGCGTSCFKICGGCCDDYTGHQELVIK  1358


 Score = 92.4 bits (228),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 52/181 (29%), Positives = 85/181 (47%), Gaps = 2/181 (1%)

Query  258  WTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSN  317
            ++A    Y+V  L  + +LL +N++G I +AVDC  D +SE KC   S     G+Y+ + 
Sbjct  253  YSAMTLEYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELNG  312

Query  318  FRVQPTESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFST  376
            + VQP   +  R PN+ + C      N     S   W RK  SNC  + S L +     +
Sbjct  313  YTVQPIADVYRRIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQADS  371

Query  377  FKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAW  436
            F C  +   K+  +CF+++  D F I       +  G  G +  +NY++      C + +
Sbjct  372  FTCNNIEAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTTAASCQLYY  431

Query  437  N  437
            N
Sbjct  432  N  432


>sp|P25191|SPIKE_CVBL9 Spike glycoprotein OS=Bovine coronavirus 
(strain L9) OX=11130 GN=S PE=1 SV=1
Length=1363

 Score = 479 bits (1232),  Expect = 2e-145, Method: Compositional matrix adjust.
 Identities = 284/759 (37%), Positives = 414/759 (55%), Gaps = 41/759 (5%)

Query  528   KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD  586
             K +T+++   CVN++  G+TG G+  E N  +   +Q    D        RD  T     
Sbjct  621   KSNTDIILGVCVNYDLYGITGQGIFVEVNAPYYNSWQNLLYDSNGNLYGFRDYLTNRTFM  680

Query  587   ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTR  646
             I  C  G VS        S++ A+L++++ C  V     + QL P         N F + 
Sbjct  681   IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSY  730

Query  647   AGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS  704
              GC++ A++  +S    CD+ +G+G C  Y T+    RR+R   +             NS
Sbjct  731   LGCVVNADNSTSSVVQTCDLTVGSGYCVDYSTK----RRSRRAITTGYRFTNFEPFTVNS  786

Query  705   VAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGS  758
             V  S         I IP+ FTI    E +  S  K ++DC+ ++CGD   C + L++YGS
Sbjct  787   VNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGS  846

Query  759   FCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN-----FSQIL----PD  808
             FC  +N  LT +    D    +V  + +  +  +  +KD   FN     FS +L     D
Sbjct  847   FCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSD  906

Query  809   PSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDE  868
              +K S RS IEDLLF+KV L+D GF++ Y +C G    RDLIC Q +NG+ VLPPLL+  
Sbjct  907   CNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSVN  966

Query  869   MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFN  928
              I+ YT A  + ++   W+  AG    +PF + + YR NGIGVT +VL +NQKLIAN FN
Sbjct  967   QISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFN  1022

Query  929   SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVE  988
             +A+  IQ+   +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +E
Sbjct  1023  NALDAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALE  1082

Query  989   AEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH  1048
             A+ QIDRLI GRL +L  YV+QQL  +  ++ SA  A  K++ECV  QS R++FCG G H
Sbjct  1083  AQAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNH  1142

Query  1049  LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQR  1107
             ++S  Q+AP+G+ F+H +YVP +      +P +C  G +   P+ G FV+    W  T  
Sbjct  1143  IISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGS  1202

Query  1108  NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG  1167
              +Y P+ IT +N  V   C        + + +   P L  FKEELD++FKN TS   DL 
Sbjct  1203  GYYYPEPITGNNVVVMSTCAANYTKAPDVMLNISTPNLHDFKEELDQWFKNQTSVAPDLS  1262

Query  1168  DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAI  1227
              +  IN + +++Q E++RL E  K LN+S I+L+++G YE Y+KWPWY+WL  + G   +
Sbjct  1263  -LDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGV  1319

Query  1228  VMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK  1266
              M+ ++                CG CC       E V+K
Sbjct  1320  AMLVLLFFICCCTGCGTSCFKICGGCCDDYTGHQELVIK  1358


 Score = 94.0 bits (232),  Expect = 6e-18, Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 5/195 (3%)

Query  244  LHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTL  303
            L   Y+ P   +S  T     Y+V  L  + +LL +N++G I +AVDC  D +SE KC  
Sbjct  242  LSHYYVLPLTCNSAMTL---EYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKT  298

Query  304  KSFTVEKGIYQTSNFRVQPTESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCV  362
             S     G+Y+ + + VQP   +  R PN+ + C      N     S   W RK  SNC 
Sbjct  299  LSIAPSTGVYELNGYTVQPIADVYRRIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCN  357

Query  363  ADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYN  422
             + S L +     +F C  +   K+  +CF+++  D F I       +  G  G +  +N
Sbjct  358  FNMSCLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFN  417

Query  423  YKLPDDFTGCVIAWN  437
            Y++    T C + +N
Sbjct  418  YRIDTTATSCQLYYN  432


>sp|P15777|SPIKE_CVBM Spike glycoprotein OS=Bovine coronavirus 
(strain Mebus) OX=11132 GN=S PE=3 SV=1
Length=1363

 Score = 478 bits (1229),  Expect = 5e-145, Method: Compositional matrix adjust.
 Identities = 285/759 (38%), Positives = 416/759 (55%), Gaps = 41/759 (5%)

Query  528   KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD  586
             K +T+++   CVN++  G+TG G+  E N  +   +Q    D        RD  T     
Sbjct  621   KSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFM  680

Query  587   ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTR  646
             I  C  G VS        S++ A+L++++ C  V     + QL P         N F + 
Sbjct  681   IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSY  730

Query  647   AGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS  704
              GC++ A++  +S    CD+ +G+G C  Y T+    RR+R   +      T      NS
Sbjct  731   LGCVVNADNSTSSVVQTCDLTVGSGYCVDYSTK----RRSRRAITTGYRFTTFEPFTVNS  786

Query  705   VAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGS  758
             V  S         I IP+ FTI    E +  S  K ++DC+ ++CGD   C + L++YGS
Sbjct  787   VNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGS  846

Query  759   FCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN-----FSQIL----PD  808
             FC  +N  LT +    D    +V  + +  +  +  +KD   FN     FS +L     D
Sbjct  847   FCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSD  906

Query  809   PSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDE  868
              +K S RS IEDLLF+KV L+D GF++ Y +C G    RDLIC Q +NG+ VLPPLL+  
Sbjct  907   CNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSVN  966

Query  869   MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFN  928
              I+ YT A  + ++    +    AA+ +PF + + YR NGIGVT +VL +NQKLIAN FN
Sbjct  967   QISGYTLAATSASLFPPLS----AAVGVPFYLNVQYRINGIGVTMDVLSQNQKLIANAFN  1022

Query  929   SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVE  988
             +A+  IQ+   +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +E
Sbjct  1023  NALDAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALE  1082

Query  989   AEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH  1048
             A+ QIDRLI GRL +L  YV+QQL  +  ++ SA  A  K++ECV  QS R++FCG G H
Sbjct  1083  AQAQIDRLINGRLTALNVYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNH  1142

Query  1049  LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQR  1107
             ++S  Q+AP+G+ F+H +YVP +      +P +C  G +   P+ G FV+    W  T  
Sbjct  1143  IISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGS  1202

Query  1108  NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG  1167
              +Y P+ IT +N  V   C V      + + +   P L  FKEELD++FKN TS   DL 
Sbjct  1203  GYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLHDFKEELDQWFKNQTSVAPDLS  1262

Query  1168  DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAI  1227
              +  IN + +++Q E++RL E  K LN+S I+L+++G YE Y+KWPWY+WL  + G   +
Sbjct  1263  -LDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGV  1319

Query  1228  VMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK  1266
              M+ ++                CG CC       E V+K
Sbjct  1320  AMLVLLFFICCCTGCGTSCFKICGGCCDDYTGHQELVIK  1358


 Score = 95.1 bits (235),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 58/195 (30%), Positives = 90/195 (46%), Gaps = 5/195 (3%)

Query  244  LHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTL  303
            L   Y+ P   SS  T     Y+V  L  + +LL +N++G I +AVDC  D +SE KC  
Sbjct  242  LSHYYVLPLTCSSAMTL---EYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKT  298

Query  304  KSFTVEKGIYQTSNFRVQPTESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCV  362
             S     G+Y+ + + VQP   +  R PN+ + C      N     S   W RK  SNC 
Sbjct  299  LSIAPSTGVYELNGYTVQPIADVYRRIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCN  357

Query  363  ADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYN  422
             + S L +     +F C  +   K+  +CF+++  D F I       +  G  G +  +N
Sbjct  358  FNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFN  417

Query  423  YKLPDDFTGCVIAWN  437
            Y++    T C + +N
Sbjct  418  YRIDTTATSCQLYYN  432


>sp|P25190|SPIKE_CVBF Spike glycoprotein OS=Bovine coronavirus 
(strain F15) OX=11129 GN=S PE=3 SV=1
Length=1363

 Score = 477 bits (1228),  Expect = 5e-145, Method: Compositional matrix adjust.
 Identities = 281/762 (37%), Positives = 415/762 (54%), Gaps = 47/762 (6%)

Query  528   KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD  586
             K +T+++   CVN++  G+TG G+  E+N  +   +Q    D        RD  T     
Sbjct  621   KSNTDIILGVCVNYDLYGITGQGIFVEANATYYNSWQNLLYDSNGNLYGFRDYLTNRTFM  680

Query  587   ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTR  646
             I  C  G VS        S++ A+L++++ C  V     + QL P         N F + 
Sbjct  681   IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSY  730

Query  647   AGCLIGAEHVNNS--YECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS  704
              GC++ A++   S    CD+ +G+G C  Y T+    R  R++ +     Y  +     +
Sbjct  731   LGCVVNADNSTASAVQTCDLTVGSGYCVDYSTKR---RSVRAITT----GYRFTNFEPFT  783

Query  705   VAYSNNS---------IAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQ  755
             V   N+S         I IP+ FTI    E +  S  K ++DC+ ++CGD   C + L++
Sbjct  784   VNSVNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDCAACKSQLVE  843

Query  756   YGSFCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFNFSQILPDP-----  809
             YGSFC  +N  LT +    D    +V  + +  +  +  +KD   FN   I   P     
Sbjct  844   YGSFCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCL  903

Query  810   ----SKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLL  865
                 +K S RS IEDLLF+KV L+D GF++ Y +C G    RDLIC Q +NG+ VLPPLL
Sbjct  904   GSECNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLL  963

Query  866   TDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIAN  925
             ++  I+ YT A  + ++   W+  AG    +PF + + YR NGIGVT +VL +NQKLIAN
Sbjct  964   SENQISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIAN  1019

Query  926   QFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLD  985
              FN+A+  IQ+   +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD
Sbjct  1020  AFNNALDAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLD  1079

Query  986   KVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGK  1045
              +EA+ QIDRLI GR  +L  YV+QQL  +  ++ SA  A  K++ECV  QS R++FCG 
Sbjct  1080  ALEAQRQIDRLINGRFTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGN  1139

Query  1046  GYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFV  1104
             G H++S  Q+AP+G+ F+H +YVP +      +P +C  G +   P+ G FV+    W  
Sbjct  1140  GNHIISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMF  1199

Query  1105  TQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDV  1164
             T   +Y P+ IT +N  V   C V      + + +   P L  FKEELD++FKN TS   
Sbjct  1200  TGSGYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLPDFKEELDQWFKNQTSVAP  1259

Query  1165  DLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGL  1224
             DL  +  IN + +++Q E++RL E  K LN+S I+L+++G YE Y+KWPWY+WL  + G 
Sbjct  1260  DLS-LDYINVTFLDLQDEMNRLQEAIKLLNQSYINLKDIGTYEYYVKWPWYVWL--LIGF  1316

Query  1225  IAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK  1266
               + M+ ++                CG CC       E V+K
Sbjct  1317  AGVAMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQELVIK  1358


 Score = 94.0 bits (232),  Expect = 7e-18, Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 5/195 (3%)

Query  244  LHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTL  303
            L   Y+ P   +S  T     Y+V  L  + +LL +N++G I +AVDC  D +SE KC  
Sbjct  242  LSHYYVMPLTCNSAMTL---EYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKT  298

Query  304  KSFTVEKGIYQTSNFRVQPTESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCV  362
             S     G+Y+ + + VQP   +  R PN+ + C      N     S   W RK  SNC 
Sbjct  299  LSIAPSTGVYELNGYTVQPIADVYRRIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCN  357

Query  363  ADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYN  422
             + S L +     +F C  +   K+  +CF+++  D F I       +  G  G +  +N
Sbjct  358  FNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFN  417

Query  423  YKLPDDFTGCVIAWN  437
            Y++    T C + +N
Sbjct  418  YRIDTTATSCQLYYN  432


>sp|P25193|SPIKE_CVBQ Spike glycoprotein OS=Bovine coronavirus 
(strain Quebec) OX=11133 GN=S PE=3 SV=2
Length=1363

 Score = 474 bits (1219),  Expect = 1e-143, Method: Compositional matrix adjust.
 Identities = 282/759 (37%), Positives = 412/759 (54%), Gaps = 41/759 (5%)

Query  528   KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD  586
             K +T+++   CVN++  G+TG G+  E N  +   +Q    D        RD  T     
Sbjct  621   KSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFM  680

Query  587   ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTR  646
             I  C  G VS        S++ A+L++++ C  V     + QL P         N F + 
Sbjct  681   IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSY  730

Query  647   AGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS  704
              GC++ A++  +S    CD+ +G+G C  Y T+    RR+R   +             NS
Sbjct  731   LGCVVNADNSTSSVVQTCDLTVGSGYCVDYSTK----RRSRRAITTGYRFTNFEPFTVNS  786

Query  705   VAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGS  758
             V  S         I IP+ FTI    E +  S  K ++DC+ ++CGD   C + L++YGS
Sbjct  787   VNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGS  846

Query  759   FCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFNFSQILPDP--------  809
             FC  +N  LT +    D    +V  + +  +  +  +KD   FN   I   P        
Sbjct  847   FCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSA  906

Query  810   -SKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDE  868
              +K S RS IEDLLF+KV L+D GF++ Y +C G    RDLIC Q +NG+ VLPPLL+  
Sbjct  907   CNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSVN  966

Query  869   MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFN  928
              I+ YT A  + ++    +    AA+ +PF + + YR NGIGVT +VL +NQKLIAN FN
Sbjct  967   QISGYTLAATSASLFPPLS----AAVGVPFYLNVQYRINGIGVTMDVLSQNQKLIANAFN  1022

Query  929   SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVE  988
             +A+  IQ+   +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +E
Sbjct  1023  NALDAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALE  1082

Query  989   AEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH  1048
             A+ QIDRLI GRL +L  YV+QQL  +  ++ SA  A  K++ECV  QS R++FCG G H
Sbjct  1083  AQAQIDRLINGRLTALNVYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNH  1142

Query  1049  LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQR  1107
             ++S  Q+AP+G+ F+H +YVP +      +P +C  G +   P+ G FV+    W  T  
Sbjct  1143  IISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGS  1202

Query  1108  NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG  1167
              +Y P+ IT +N  V   C V      + + +   P L  FKEELD++FKN TS   DL 
Sbjct  1203  GYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLHDFKEELDQWFKNQTSVAPDLS  1262

Query  1168  DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAI  1227
              +  IN + +++Q E++RL E  K LN+S I+L+++G YE Y+KWPWY+WL  + G   +
Sbjct  1263  -LDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGV  1319

Query  1228  VMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK  1266
              M+ ++                CG CC       E V+K
Sbjct  1320  AMLVLLFFICCCTGCGTSCFKICGGCCDDYTGHQELVIK  1358


 Score = 95.1 bits (235),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 58/195 (30%), Positives = 90/195 (46%), Gaps = 5/195 (3%)

Query  244  LHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTL  303
            L   Y+ P   SS  T     Y+V  L  + +LL +N++G I +AVDC  D +SE KC  
Sbjct  242  LSHYYVLPLTCSSAMTL---EYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKT  298

Query  304  KSFTVEKGIYQTSNFRVQPTESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCV  362
             S     G+Y+ + + VQP   +  R PN+ + C      N     S   W RK  SNC 
Sbjct  299  LSIAPSTGVYELNGYTVQPIADVYRRIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCN  357

Query  363  ADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYN  422
             + S L +     +F C  +   K+  +CF+++  D F I       +  G  G +  +N
Sbjct  358  FNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFN  417

Query  423  YKLPDDFTGCVIAWN  437
            Y++    T C + +N
Sbjct  418  YRIDTTATSCQLYYN  432


>sp|Q0ZME7|SPIKE_CVHN5 Spike glycoprotein OS=Human coronavirus 
HKU1 (isolate N5) OX=443241 GN=S PE=1 SV=1
Length=1351

 Score = 467 bits (1201),  Expect = 3e-141, Method: Compositional matrix adjust.
 Identities = 275/750 (37%), Positives = 410/750 (55%), Gaps = 56/750 (7%)

Query  530   STNLVKNKCVNFNFNGLTGTGVLTESNKKFLP-FQQFGRDIADTTDAVRDPQTLEILDIT  588
             +T +    CVN++  G+TG G+  E +  +   +Q    D        +D  T +   I 
Sbjct  611   NTEISTGVCVNYDLYGITGQGIFKEVSAAYYNNWQNLLYDSNGNIIGFKDFLTNKTYTIL  670

Query  589   PCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAG  648
             PC  G VS        S+  A+LY+++ C+ V   I           + +    F +  G
Sbjct  671   PCYSGRVSA--AFYQNSSSPALLYRNLKCSYVLNNIS----------FISQPFYFDSYLG  718

Query  649   CLIGAEHVNNSYE---CDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSV  705
             C++ A ++  SY    CD+ +G+G C  Y   + S R+ R ++S     Y        +V
Sbjct  719   CVLNAVNLT-SYSVSSCDLRMGSGFCIDYALPS-SRRKRRGISS----PYRFVTFEPFNV  772

Query  706   AYSNNS---------IAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQY  756
             ++ N+S         I IPTNFTI+   E +  S  K ++DC+ ++C +   C +LL +Y
Sbjct  773   SFVNDSVETVGGLFEIQIPTNFTIAGHEEFIQTSSPKVTIDCSAFVCSNYAACHDLLSEY  832

Query  757   GSFCTQLNRALTGIAVEQDKNTQEVFAQVKQ------IYKTPPIKDFGGFNFSQILP---  807
             G+FC  +N  L  +    D    +V   + Q         T    D    +F  +L    
Sbjct  833   GTFCDNINSILNEVNDLLDITQLQVANALMQGVTLSSNLNTNLHSDVDNIDFKSLLGCLG  892

Query  808   DPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTD  867
                  S RS +EDLLFNKV L+D GF++ Y +C G    RDL+C Q FNG+ VLPP+L++
Sbjct  893   SQCGSSSRSLLEDLLFNKVKLSDVGFVEAYNNCTGGSEIRDLLCVQSFNGIKVLPPILSE  952

Query  868   EMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQF  927
               I+ YT+A     +   W+  AG    +PF++ + YR NG+GVT +VL +NQKLIAN F
Sbjct  953   TQISGYTTAATVAAMFPPWSAAAG----VPFSLNVQYRINGLGVTMDVLNKNQKLIANAF  1008

Query  928   NSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKV  987
             N A+  IQ+  ++T SAL K+Q VVN NAQALN+L++QL + FGAISS L +ILSRLD +
Sbjct  1009  NKALLSIQNGFTATNSALAKIQSVVNANAQALNSLLQQLFNKFGAISSSLQEILSRLDNL  1068

Query  988   EAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGY  1047
             EA+VQIDRLI GRL +L  YV+QQL     I+A A+ A  K++ECV  QS R++FCG G 
Sbjct  1069  EAQVQIDRLINGRLTALNAYVSQQLSDITLIKAGASRAIEKVNECVKSQSPRINFCGNGN  1128

Query  1048  HLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQ  1106
             H++S  Q+AP+G++F+H +Y P   K    +P +C  G +   P++G F+     W  T 
Sbjct  1129  HILSLVQNAPYGLLFIHFSYKPTSFKTVLVSPGLCLSGDRGIAPKQGYFIKQNDSWMFTG  1188

Query  1107  RNFYEPQIITTDNTFVSGNCDVVIG-----IVNNTVYDPLQPELDSFKEELDKYFKNHTS  1161
              ++Y P+ I+  N     +C V         +NN++     P L  F+ EL  +FKNHTS
Sbjct  1189  SSYYYPEPISDKNVVFMNSCSVNFTKAPFIYLNNSI-----PNLSDFEAELSLWFKNHTS  1243

Query  1162  PDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFI  1221
                +L   S INA+ +++  E++ + E  K+LN S I+L+E+G YE Y+KWPWYIWL  +
Sbjct  1244  IAPNLTFNSHINATFLDLYYEMNVIQESIKSLNSSFINLKEIGTYEMYVKWPWYIWLLIV  1303

Query  1222  AGLIAIVMVTIMLCCMTSCCS-CLKGCCSC  1250
                I  +M+   +CC T C S C   C +C
Sbjct  1304  ILFIIFLMILFFICCCTGCGSACFSKCHNC  1333


 Score = 92.4 bits (228),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 81/169 (48%), Gaps = 2/169 (1%)

Query  265  YYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTE  324
            Y+V  L  R +LL ++E+G IT+AVDC+   LSE +C  +SF    G+Y  S F V+P  
Sbjct  256  YWVTPLSRRQYLLNFDEHGVITNAVDCSSSFLSEIQCKTQSFAPNTGVYDLSGFTVKPVA  315

Query  325  SIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVS  383
            ++  R PN+ + C      N     S   W R+  SNC  + S L       +F C  + 
Sbjct  316  TVYRRIPNLPD-CDIDNWLNNVSVPSPLNWERRIFSNCNFNLSTLLRLVHVDSFSCNNLD  374

Query  384  PTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGC  432
             +K+   CF ++  D F I       +  G +G +   NYK+    + C
Sbjct  375  KSKIFGSCFNSITVDKFAIPNRRRDDLQLGSSGFLQSSNYKIDISSSSC  423


>sp|Q14EB0|SPIKE_CVHN2 Spike glycoprotein OS=Human coronavirus 
HKU1 (isolate N2) OX=443240 GN=S PE=3 SV=1
Length=1351

 Score = 466 bits (1198),  Expect = 9e-141, Method: Compositional matrix adjust.
 Identities = 273/742 (37%), Positives = 406/742 (55%), Gaps = 56/742 (8%)

Query  538   CVNFNFNGLTGTGVLTESNKKFLP-FQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVS  596
             CVN++  G+TG G+  E +  +   +Q    D        +D  T +   I PC  G VS
Sbjct  619   CVNYDLYGITGQGIFKEVSAAYYNNWQNLLYDSNGNIIGFKDFLTNKTYTILPCYSGRVS  678

Query  597   VITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHV  656
                     S+  A+LY+++ C+ V   I           + +    F +  GC++ A ++
Sbjct  679   A--AFYQNSSSPALLYRNLKCSYVLNNIS----------FISQPFYFDSYLGCVLNAVNL  726

Query  657   NNSYE---CDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNS--  711
               SY    CD+ +G+G C  Y   + S R+ R ++S     Y        +V++ N+S  
Sbjct  727   T-SYSVSSCDLRMGSGFCIDYALPS-SRRKRRGISS----PYRFVTFEPFNVSFVNDSVE  780

Query  712   -------IAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLN  764
                    I IPTNFTI+   E +  S  K ++DC+ ++C +   C +LL +YG+FC  +N
Sbjct  781   TVGGLFEIQIPTNFTIAGHEEFIQTSSPKVTIDCSAFVCSNYAACHDLLSEYGTFCDNIN  840

Query  765   RALTGIAVEQDKNTQEVFAQVKQ------IYKTPPIKDFGGFNFSQILP---DPSKPSKR  815
               L  +    D    +V   + Q         T    D    +F  +L         S R
Sbjct  841   SILNEVNDLLDITQLQVANALMQGVTLSSNLNTNLHSDVDNIDFKSLLGCLGSQCGSSSR  900

Query  816   SFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTS  875
             S +EDLLFNKV L+D GF++ Y +C G    RDL+C Q FNG+ VLPP+L++  I+ YT+
Sbjct  901   SLLEDLLFNKVKLSDVGFVEAYNNCTGGSEIRDLLCVQSFNGIKVLPPILSETQISGYTT  960

Query  876   ALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQ  935
             A     +   W+  AG    +PF++ + YR NG+GVT +VL +NQKLIAN FN A+  IQ
Sbjct  961   AATVAAMFPPWSAAAG----VPFSLNVQYRINGLGVTMDVLNKNQKLIANAFNKALLSIQ  1016

Query  936   DSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDR  995
             +  ++T SAL K+Q VVN NAQALN+L++QL + FGAISS L +ILSRLD +EA+VQIDR
Sbjct  1017  NGFTATNSALAKIQSVVNANAQALNSLLQQLFNKFGAISSSLQEILSRLDNLEAQVQIDR  1076

Query  996   LITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQS  1055
             LI GRL +L  YV+QQL     I+A A+ A  K++ECV  QS R++FCG G H++S  Q+
Sbjct  1077  LINGRLTALNAYVSQQLSDITLIKAGASRAIEKVNECVKSQSPRINFCGNGNHILSLVQN  1136

Query  1056  APHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQRNFYEPQI  1114
             AP+G++F+H +Y P   K    +P +C  G +   P++G F+     W  T  ++Y P+ 
Sbjct  1137  APYGLLFIHFSYKPTSFKTVLVSPGLCLSGDRGIAPKQGYFIKQNDSWMFTGSSYYYPEP  1196

Query  1115  ITTDNTFVSGNCDVVIG-----IVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDI  1169
             I+  N     +C V         +NN++     P L  F+ E   +FKNHTS   +L   
Sbjct  1197  ISDKNVVFMNSCSVNFTKAPFIYLNNSI-----PNLSDFEAEFSLWFKNHTSIAPNLTFN  1251

Query  1170  SGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVM  1229
             S INA+ +++  E++ + E  K+LN S I+L+E+G YE Y+KWPWYIWL  +   I  +M
Sbjct  1252  SHINATFLDLYYEMNVIQESIKSLNSSFINLKEIGTYEMYVKWPWYIWLLIVILFIIFLM  1311

Query  1230  VTIMLCCMTSCCS-CLKGCCSC  1250
             +   +CC T C S C   C +C
Sbjct  1312  ILFFICCCTGCGSACFSKCHNC  1333


 Score = 92.4 bits (228),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 81/169 (48%), Gaps = 2/169 (1%)

Query  265  YYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTE  324
            Y+V  L  R +LL ++E+G IT+AVDC+   LSE +C  +SF    G+Y  S F V+P  
Sbjct  256  YWVTPLSRRQYLLNFDEHGVITNAVDCSSSFLSEIQCKTQSFAPNTGVYDLSGFTVKPVA  315

Query  325  SIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVS  383
            ++  R PN+ + C      N     S   W R+  SNC  + S L       +F C  + 
Sbjct  316  TVYRRIPNLPD-CDIDNWLNNVSVPSPLNWERRIFSNCNFNLSTLLRLVHVDSFSCNNLD  374

Query  384  PTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGC  432
             +K+   CF ++  D F I       +  G +G +   NYK+    + C
Sbjct  375  KSKIFGSCFNSITVDKFAIPNRRRDDLQLGSSGFLQSSNYKIDISSSSC  423


>sp|P36334|SPIKE_CVHOC Spike glycoprotein OS=Human coronavirus 
OC43 OX=31631 GN=S PE=1 SV=1
Length=1353

 Score = 464 bits (1195),  Expect = 2e-140, Method: Compositional matrix adjust.
 Identities = 285/760 (38%), Positives = 410/760 (54%), Gaps = 43/760 (6%)

Query  528   KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD  586
             K +T+++   CVN++  G+ G G+  E N  +   +Q    D        RD        
Sbjct  611   KANTDIILGVCVNYDLYGILGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYIINRTFM  670

Query  587   ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTR  646
             I  C  G VS        S++ A+L++++ C  V       QL P         N F + 
Sbjct  671   IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNSLTRQLQPI--------NYFDSY  720

Query  647   AGCLIGAEHVN--NSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS  704
              GC++ A +    +   CD+ +G+G C  Y       RR+R   +             NS
Sbjct  721   LGCVVNAYNSTAISVQTCDLTVGSGYCVDYSKN----RRSRGAITTGYRFTNFEPFTVNS  776

Query  705   VAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGS  758
             V  S         I IP+ FTI    E +  S  K ++DC  ++CGD   C + L++YGS
Sbjct  777   VNDSLEPVGGLYEIQIPSEFTIGNMVEFIQTSSPKVTIDCAAFVCGDYAACKSQLVEYGS  836

Query  759   FCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFNFSQILPDP--------  809
             FC  +N  LT +    D    +V  + +  +  +  +KD   FN   I   P        
Sbjct  837   FCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSE  896

Query  810   -SKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDE  868
              SK S RS IEDLLF+KV L+D GF++ Y +C G    RDLIC Q + G+ VLPPLL++ 
Sbjct  897   CSKASSRSAIEDLLFDKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYKGIKVLPPLLSEN  956

Query  869   MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFN  928
              I+ YT A  + ++   WT  AG    +PF + + YR NG+GVT +VL +NQKLIAN FN
Sbjct  957   QISGYTLAATSASLFPPWTAAAG----VPFYLNVQYRINGLGVTMDVLSQNQKLIANAFN  1012

Query  929   SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVE  988
             +A+  IQ+   +T SAL K+Q VVN NA+ALN L++QLS+ FGAIS+ L +ILSRLD +E
Sbjct  1013  NALYAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISASLQEILSRLDALE  1072

Query  989   AEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH  1048
             AE QIDRLI GRL +L  YV+QQL  +  ++ SA  A  K++ECV  QS R++FCG G H
Sbjct  1073  AEAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNH  1132

Query  1049  LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQR  1107
             ++S  Q+AP+G+ F+H +YVP +      +P +C  G +   P+ G FV+    W  T  
Sbjct  1133  IISLVQNAPYGLYFIHFSYVPTKYVTARVSPGLCIAGDRGIAPKSGYFVNVNNTWMYTGS  1192

Query  1108  NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG  1167
              +Y P+ IT +N  V   C V        + +   P L  FKEELD++FKN TS   DL 
Sbjct  1193  GYYYPEPITENNVVVMSTCAVNYTKAPYVMLNTSIPNLPDFKEELDQWFKNQTSVAPDLS  1252

Query  1168  DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGF-IAGLIA  1226
              +  IN + +++Q E++RL E  K LN+S I+L+++G YE Y+KWPWY+WL   +AG+  
Sbjct  1253  -LDYINVTFLDLQVEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWLLICLAGVAM  1311

Query  1227  IVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK  1266
             +V++  + CC     SC K    CG CC       E V+K
Sbjct  1312  LVLLFFICCCTGCGTSCFK---KCGGCCDDYTGYQELVIK  1348


 Score = 95.9 bits (237),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 59/197 (30%), Positives = 92/197 (47%), Gaps = 5/197 (3%)

Query  242  LALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKC  301
            +AL   Y+ P   +S  T     Y+V  L  R +LL +N++G I +A DC  D +SE KC
Sbjct  244  MALSHYYVMPLTCNSKLTL---EYWVTPLTSRQYLLAFNQDGIIFNAEDCMSDFMSEIKC  300

Query  302  TLKSFTVEKGIYQTSNFRVQPTESIVRF-PNITNLCPFGEVFNATRFASVYAWNRKRISN  360
              +S     G+Y+ + + VQP   + R  PN+ N C      N     S   W RK  SN
Sbjct  301  KTQSIAPPTGVYELNGYTVQPIADVYRRKPNLPN-CNIEAWLNDKSVPSPLNWERKTFSN  359

Query  361  CVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIAD  420
            C  + S L +     +F C  +   K+  +CF+++  D F I       +  G  G +  
Sbjct  360  CNFNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQS  419

Query  421  YNYKLPDDFTGCVIAWN  437
            +NY++    T C + +N
Sbjct  420  FNYRIDTTATSCQLYYN  436


>sp|P11224|SPIKE_CVMA5 Spike glycoprotein OS=Murine coronavirus 
(strain A59) OX=11142 GN=S PE=1 SV=2
Length=1324

 Score = 459 bits (1182),  Expect = 9e-139, Method: Compositional matrix adjust.
 Identities = 277/760 (36%), Positives = 414/760 (54%), Gaps = 62/760 (8%)

Query  530   STNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILDIT  588
             +T +V   CV ++  G+TG GV  E    +   +Q    D+    +  RD  T +   I 
Sbjct  572   NTEVVTGICVKYDLYGITGQGVFKEVKADYYNSWQTLLYDVNGNLNGFRDLTTNKTYTIR  631

Query  589   PCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAG  648
              C  G VS        + + A+LY+++NC+ V     + +  P         N F +  G
Sbjct  632   SCYSGRVSAAF--HKDAPEPALLYRNINCSYVFSNNISREENPL--------NYFDSYLG  681

Query  649   CLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVA  706
             C++ A++  +     CD+ +GAG+C  Y   + S R  RSV++     Y ++     +  
Sbjct  682   CVVNADNRTDEALPNCDLRMGAGLCVDY---SKSRRAHRSVST----GYRLTTFEPYTPM  734

Query  707   YSNNSIA---------IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYG  757
               N+S+          IPTNFTI    E +     K ++DC  ++CGD+T C   L++YG
Sbjct  735   LVNDSVQSVDGLYEMQIPTNFTIGHHEEFIQTRSPKVTIDCAAFVCGDNTACRQQLVEYG  794

Query  758   SFCTQLNRALTGIAVEQDKNTQEVFAQVKQ----IYKTP-----PIKDFGGFNFSQILP-  807
             SFC  +N  L  +    D    +V + + Q      + P     PI D    NFS +L  
Sbjct  795   SFCVNVNAILNEVNNLLDNMQLQVASALMQGVTISSRLPDGISGPIDDI---NFSPLLGC  851

Query  808   ----------DPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNG  857
                        PS    RS IEDLLF+KV L+D GF++ Y +C G    RDL+C Q FNG
Sbjct  852   IGSTCAEDGNGPSAIRGRSAIEDLLFDKVKLSDVGFVEAYNNCTGGQEVRDLLCVQSFNG  911

Query  858   LTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLY  917
             + VLPP+L++  I+ YT+   A  +   W+  AG    +PF++ + YR NG+GVT NVL 
Sbjct  912   IKVLPPVLSESQISGYTTGATAAAMFPPWSAAAG----VPFSLSVQYRINGLGVTMNVLS  967

Query  918   ENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVL  977
             ENQK+IA+ FN+A+G IQD   +T SALGK+Q VVN NA+ALN L+ QLS+ FGAIS+ L
Sbjct  968   ENQKMIASAFNNALGAIQDGFDATNSALGKIQSVVNANAEALNNLLNQLSNRFGAISASL  1027

Query  978   NDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQS  1037
              +IL+RL+ VEA+ QIDRLI GRL +L  Y+++QL  +  I+ SA  A  K++ECV  Q+
Sbjct  1028  QEILTRLEAVEAKAQIDRLINGRLTALNAYISKQLSDSTLIKVSAAQAIEKVNECVKSQT  1087

Query  1038  KRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFV  1096
              R++FCG G H++S  Q+AP+G+ F+H +YVP        +P +C  G +   P+ G FV
Sbjct  1088  TRINFCGNGNHILSLVQNAPYGLYFIHFSYVPISFTTANVSPGLCISGDRGLAPKAGYFV  1147

Query  1097  SNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYF  1156
              +   W  T  ++Y P+ IT  N+ +  +C V          +   P    FKEELDK+F
Sbjct  1148  QDDGEWKFTGSSYYYPEPITDKNSVIMSSCAVNYTKAPEVFLNTSIPNPPDFKEELDKWF  1207

Query  1157  KNHTS--PDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPW  1214
             KN TS  PD+ L D   +N +++++  E++R+ +  K LNES I+L+E+G YE Y+KWPW
Sbjct  1208  KNQTSIAPDLSL-DFEKLNVTLLDLTYEMNRIQDAIKKLNESYINLKEVGTYEMYVKWPW  1266

Query  1215  YIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCC  1254
             Y+WL  + GL  + +  ++                CG+CC
Sbjct  1267  YVWL--LIGLAGVAVCVLLFFICCCTGCGSCCFKKCGNCC  1304


 Score = 85.1 bits (209),  Expect = 3e-15, Method: Compositional matrix adjust.
 Identities = 56/183 (31%), Positives = 80/183 (44%), Gaps = 7/183 (4%)

Query  259  TAG---AAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQT  315
            TAG   A  Y+V  L  R +L  +N+ G IT AVDCA    SE KC  +S     G+Y+ 
Sbjct  249  TAGSTFAPRYWVTPLVKRQYLFNFNQKGVITSAVDCASSYTSEIKCKTQSMLPSTGVYEL  308

Query  316  SNFRVQPTESIVRFPNITNL--CPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSAS  373
            S + VQP   + R   + NL  C   E   A    S   W RK   NC  + S L     
Sbjct  309  SGYTVQPVGVVYR--RVANLPACNIEEWLTARSVPSPLNWERKTFQNCNFNLSSLLRYVQ  366

Query  374  FSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCV  433
              +  C  +  +K+   CF ++  D F +       +  G +G +   NYK+    T C 
Sbjct  367  AESLFCNNIDASKVYGRCFGSISVDKFAVPRSRQVDLQLGNSGFLQTANYKIDTAATSCQ  426

Query  434  IAW  436
            + +
Sbjct  427  LHY  429


>sp|Q8JSP8|SPIKE_CVPIA Spike glycoprotein OS=Porcine hemagglutinating 
encephalomyelitis virus (strain IAF-404) OX=230236 GN=S 
PE=3 SV=1
Length=1349

 Score = 459 bits (1181),  Expect = 2e-138, Method: Compositional matrix adjust.
 Identities = 277/753 (37%), Positives = 411/753 (55%), Gaps = 58/753 (8%)

Query  528   KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD  586
             + +TN+  + CVN++  G+TG G+L E N  +   +Q    D +      RD  +     
Sbjct  607   QGNTNITTDVCVNYDLYGITGQGILIEVNATYYNSWQNLLYDSSGNLYGFRDYLSNRTFL  666

Query  587   ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEV--PVAIHADQLTPTWRVYSTGSNVFQ  644
             I  C  G VS +      S++ A++++++ C+ V     +   QL           N F 
Sbjct  667   IRSCYSGRVSAVFHAN--SSEPALMFRNLKCSHVFNYTILRQIQLV----------NYFD  714

Query  645   TRAGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAE  702
             +  GC++ A +   S    CD+ +G+G C  Y T   S R           ++T      
Sbjct  715   SYLGCVVNAYNNTASAVSTCDLTVGSGYCVDYVTALRSRR-----------SFTTGYRFT  763

Query  703   NSVAYSNN-------------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTEC  749
             N   ++ N              I IP+ FTI    E +  S  K ++DC  ++CGD   C
Sbjct  764   NFEPFAANLVNDSIEPVGGLYEIQIPSEFTIGNLEEFIQTSSPKVTIDCATFVCGDYAAC  823

Query  750   SNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN-----FS  803
                L +YGSFC  +N  L  +    D    +V  + +  +  +  IKD   FN     FS
Sbjct  824   RQQLAEYGSFCENINAILIEVNELLDTTQLQVANSLMNGVTLSTKIKDGINFNVDDINFS  883

Query  804   QIL----PDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLT  859
              +L     + ++ S RS IEDLLF+KV L+D GF++ Y +C G    RDLIC Q +NG+ 
Sbjct  884   SVLGCLGSECNRASTRSAIEDLLFDKVKLSDVGFVQAYNNCTGGAEIRDLICVQSYNGIK  943

Query  860   VLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYEN  919
             VLPPLL++  I+ YTSA  A ++   WT  AG    +PF + + YR NG+GVT +VL +N
Sbjct  944   VLPPLLSENQISGYTSAATAASLFPPWTAAAG----VPFYLNVQYRINGLGVTMDVLSQN  999

Query  920   QKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLND  979
             QKLIA+ FN+A+  IQ+   +T SAL K+Q VVN NA+ALN L++QLS+ FGAIS+ L +
Sbjct  1000  QKLIASAFNNALDSIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISASLQE  1059

Query  980   ILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKR  1039
             ILSRLD +EA+ QIDRLI GRL +L  YV+QQL  +  ++ SA  A  K++ECV  QS R
Sbjct  1060  ILSRLDALEAKAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAIEKVNECVKSQSSR  1119

Query  1040  VDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHF-PREGVFVSN  1098
             ++FCG G H++S  Q+AP+G+ F+H +YVP +      +P +C  G     P+ G F++ 
Sbjct  1120  INFCGNGNHIISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDIGISPKSGYFINV  1179

Query  1099  GTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKN  1158
                W  T   +Y P+ IT +N  V   C V      + + +   P L  FKEEL ++FKN
Sbjct  1180  NNSWMFTGSGYYYPEPITQNNVVVMSTCAVNYTKAPDLMLNTSTPNLPDFKEELYQWFKN  1239

Query  1159  HTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWL  1218
              +S   DL     IN + +++Q E++RL E  K LN S I+L+++G YE Y+KWPWY+WL
Sbjct  1240  QSSLAPDL-SFDYINVTFLDLQDEMNRLQEAIKVLNHSYINLKDIGTYEYYVKWPWYVWL  1298

Query  1219  GF-IAGLIAIVMVTIMLCCMTSCCSCLKGCCSC  1250
                +AG++ +V++  + CC     SC K C  C
Sbjct  1299  LICLAGVVMLVLLFFICCCTGCGTSCFKKCGGC  1331


 Score = 94.0 bits (232),  Expect = 6e-18, Method: Compositional matrix adjust.
 Identities = 52/175 (30%), Positives = 87/175 (50%), Gaps = 2/175 (1%)

Query  259  TAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNF  318
            +A +  Y+V  L  R FLL ++++G +  AVDCA D +SE  C   S T   G+Y+ + +
Sbjct  254  SALSLEYWVTPLTTRQFLLAFDQDGVLYHAVDCASDFMSEIMCKTSSITPPTGVYELNGY  313

Query  319  RVQPTESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTF  377
             VQP  ++  R P++ N C      N+   +S   W RK  SNC  +   L +     +F
Sbjct  314  TVQPVATVYRRIPDLPN-CDIEAWLNSKTVSSPLNWERKIFSNCNFNMGRLMSFIQADSF  372

Query  378  KCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGC  432
             C  +  ++L  +CF ++  D F I       +  G++G +  +NYK+    + C
Sbjct  373  GCNNIDASRLYGMCFGSITIDKFAIPNSRKVDLQVGKSGYLQSFNYKIDTAVSSC  427


>sp|Q8BB25|SPIKE_CVP67 Spike glycoprotein OS=Porcine hemagglutinating 
encephalomyelitis virus (strain 67N) OX=230237 GN=S 
PE=3 SV=1
Length=1349

 Score = 459 bits (1180),  Expect = 2e-138, Method: Compositional matrix adjust.
 Identities = 274/768 (36%), Positives = 408/768 (53%), Gaps = 59/768 (8%)

Query  528   KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD  586
             + +T +  + CVN++  G+TG G+L E N  +   +Q    D +      RD  +     
Sbjct  607   QGNTIITTDVCVNYDLYGITGQGILIEVNATYYNSWQNLLYDSSGNLYGFRDYLSNRTFL  666

Query  587   ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEV--PVAIHADQLTPTWRVYSTGSNVFQ  644
             I  C  G VS +      S++ A++++++ C+ V     +   QL           N F 
Sbjct  667   IRSCYSGRVSAVFHAN--SSEPALMFRNLKCSHVFNNTILRQIQLV----------NYFD  714

Query  645   TRAGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAE  702
             +  GC++ A +   S    CD+ +G+G C  Y T   S R           ++T      
Sbjct  715   SYLGCVVNAYNNTASAVSTCDLTVGSGYCVDYVTALRSRR-----------SFTTGYRFT  763

Query  703   NSVAYSNN-------------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTEC  749
             N   ++ N              I IP+ FTI    E +     K ++DC  ++CGD   C
Sbjct  764   NFEPFAANLVNDSIEPVGGLYEIQIPSEFTIGNLEEFIQTRSPKVTIDCATFVCGDYAAC  823

Query  750   SNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFNFSQILPD  808
                L +YGSFC  +N  LT +    D    +V  + +  +  +  IKD   FN   I   
Sbjct  824   RQQLAEYGSFCENINAILTEVNELLDTTQLQVANSLMNGVTLSTKIKDGINFNVDDINFS  883

Query  809   P---------SKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLT  859
             P         ++ S RS IEDLLF+KV L+D GF++ Y +C G    RDLIC Q +NG+ 
Sbjct  884   PVLGCLGSECNRASTRSAIEDLLFDKVKLSDVGFVQAYNNCTGGAEIRDLICVQSYNGIK  943

Query  860   VLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYEN  919
             VLPPLL++  I+ YT A  A ++   WT  AG    +PF + + YR NG+GVT +VL +N
Sbjct  944   VLPPLLSENQISGYTLAATAASLFPPWTAAAG----VPFYLNVQYRINGLGVTMDVLSQN  999

Query  920   QKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLND  979
             QKLIA+ FN+A+  IQ+   +T SAL K+Q VVN NA+ALN L++QLS+ FGAIS+ L +
Sbjct  1000  QKLIASAFNNALDAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISASLQE  1059

Query  980   ILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKR  1039
             ILSRLD +EA+ QIDRLI GRL +L  YV+QQL  +  ++ SA  A  K++ECV  QS R
Sbjct  1060  ILSRLDALEAKAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAIEKVNECVKSQSSR  1119

Query  1040  VDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHF-PREGVFVSN  1098
             ++FCG G H++S  Q+AP+G+ F+H +YVP +      +P +C  G     P+ G F++ 
Sbjct  1120  INFCGNGNHIISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDIGISPKSGYFINV  1179

Query  1099  GTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKN  1158
                W  T  ++Y P+ IT +N  V   C V      + + +   P L  FKEEL ++FKN
Sbjct  1180  NNSWMFTGSSYYYPEPITQNNVVVMSTCAVNYTKAPDLMLNTSTPNLPDFKEELYQWFKN  1239

Query  1159  HTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWL  1218
              +S   DL  +  IN + +++Q E++RL E  K LN+S I+L+++G YE Y+KWPWY+WL
Sbjct  1240  QSSVAPDL-SLDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL  1298

Query  1219  GFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK  1266
               + GL  + M+ ++                CG CC       E V+K
Sbjct  1299  --LIGLAGVAMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQEFVIK  1344


 Score = 94.4 bits (233),  Expect = 5e-18, Method: Compositional matrix adjust.
 Identities = 108/450 (24%), Positives = 178/450 (40%), Gaps = 80/450 (18%)

Query  8    LPLVSSQCVNLT----TRTQLPPAYTNS-FTRGVYYP--DKVFRSSVLHSTQDLFLPFFS  60
            +P +SS+ V++T    T   L   Y N+      YYP     FR+  L  T+ L      
Sbjct  33   VPSISSEVVDVTNGLGTFYVLDRVYLNTTLLLNGYYPISGATFRNMALKGTRLL------  86

Query  61   NVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIV  120
            +  WF    +S             PFNDG+ FA  + S   +  +  +   + T     V
Sbjct  87   STLWFKPPFLS-------------PFNDGI-FAKVKNSRFSKDGVIYSEFPAITIGSTFV  132

Query  121  NNATNVV-----------------IKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA  163
            N + ++V                 I VC++  C  P      H N  +     +   +  
Sbjct  133  NTSYSIVVEPHTSLINGNLQGLLQISVCQYTMCEYPH--TICHPNLGNQRIELWHYDTDV  190

Query  164  NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSAL  223
             +C +    + F  D+      F   +E       G F  Y   T          GF   
Sbjct  191  VSCLYR---RNFTYDVNADYLYFHFYQE------GGTFYAYFTDT----------GF-VT  230

Query  224  EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENG  283
            + L  L +G  ++ +         Y+ P   +S   A +  Y+V  L  R FLL ++++G
Sbjct  231  KFLFKLYLGTVLSHY---------YVMPLTCNS---ALSLEYWVTPLTTRQFLLAFDQDG  278

Query  284  TITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIV-RFPNITNLCPFGEVF  342
             +  AVDCA D +SE  C   S T   G+Y+ + + VQP  ++  R P++ N C      
Sbjct  279  VLYHAVDCASDFMSEIMCKTSSITPPTGVYELNGYTVQPVATVYRRIPDLPN-CDIEAWL  337

Query  343  NATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVI  402
            N+   +S   W RK  SNC  +   L +     +F C  +  ++L  +CF ++  D F I
Sbjct  338  NSKTVSSPLNWERKIFSNCNFNMGRLMSFIQADSFGCNNIDASRLYGMCFGSITIDKFAI  397

Query  403  RGDEVRQIAPGQTGKIADYNYKLPDDFTGC  432
                   +  G++G +  +NYK+    + C
Sbjct  398  PNSRKVDLQVGKSGYLQSFNYKIDTAVSSC  427


>sp|Q02385|SPIKE_CVMJC Spike glycoprotein OS=Murine coronavirus 
(strain JHMV / variant CL-2) OX=33735 GN=S PE=1 SV=1
Length=1376

 Score = 459 bits (1180),  Expect = 4e-138, Method: Compositional matrix adjust.
 Identities = 282/757 (37%), Positives = 411/757 (54%), Gaps = 56/757 (7%)

Query  530   STNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILDIT  588
             +T +    CV ++  G+TG GV  E    +   +Q    D+    +  RD  T +   I 
Sbjct  624   NTEVATGVCVRYDLYGITGQGVFKEVKADYYNSWQALLYDVNGNLNGFRDLTTNKTYTIR  683

Query  589   PCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAG  648
              C  G VS        + + A+LY+++NC+ V     + +  P         N F +  G
Sbjct  684   SCYSGRVSAAY--HKEAPEPALLYRNINCSYVFTNNISREENPL--------NYFDSYLG  733

Query  649   CLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYT----MSLGAE  702
             C++ A++  +     CD+ +GAG+C  Y       RRAR   S      T    M +   
Sbjct  734   CVVNADNRPDEALPNCDLRMGAGLCVDYSKS----RRARRSVSTGYRLTTFEPYMPMLVN  789

Query  703   NSVAYSNN--SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFC  760
             +SV        + IPTNFTI    E + +   K ++DC  ++CGD+  C   L++YGSFC
Sbjct  790   DSVQSVGGLYEMQIPTNFTIGHHEEFIQIRAPKVTIDCAAFVCGDNAACRQQLVEYGSFC  849

Query  761   TQLNRALTGIAVEQDKNTQEVFAQVKQ----IYKTP-----PIKDFGGFNFSQILP----  807
               +N  L  +    D    +V + + Q      + P     PI D    NFS +L     
Sbjct  850   DNVNAILNEVNNLLDNMQLQVASALMQGVTISSRLPDGISGPIDDI---NFSPLLGCIGS  906

Query  808   -------DPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTV  860
                     PS    RS IEDLLF+KV L+D GF++ Y +C G    RDL+C Q FNG+ V
Sbjct  907   TCAEDGNGPSAMRGRSAIEDLLFDKVKLSDVGFVEAYNNCTGGQEVRDLLCVQSFNGIKV  966

Query  861   LPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQ  920
             LPP+L++  I+ YT+   A  +   WT  AG    +PF++ + YR NG+GVT NVL ENQ
Sbjct  967   LPPVLSESQISGYTAGATAAAMFPPWTAAAG----VPFSLNVQYRINGLGVTMNVLSENQ  1022

Query  921   KLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDI  980
             K+IA+ FN+A+G IQ+   +T SALGK+Q VVN NA+ALN L+ QLS+ FGAIS+ L +I
Sbjct  1023  KMIASAFNNALGAIQEGFDATNSALGKIQSVVNANAEALNNLLNQLSNRFGAISASLQEI  1082

Query  981   LSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV  1040
             L+RLD+VEA+ QIDRLI GRL +L  Y+++QL  +  I+ SA  A  K++ECV  Q+ R+
Sbjct  1083  LTRLDRVEAKAQIDRLINGRLTALNAYISKQLSDSTLIKFSAAQAIEKVNECVKSQTTRI  1142

Query  1041  DFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNG  1099
             +FCG G H++S  Q+AP+G+ F+H +YVP   K    +P +C  G +   P+ G FV + 
Sbjct  1143  NFCGNGNHILSLVQNAPYGLCFIHFSYVPTSFKTANVSPGLCISGDRGLAPKAGYFVQDN  1202

Query  1100  THWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNH  1159
               W  T  N+Y P+ IT  N+ V  +C V          +   P L  FKEELDK+FKN 
Sbjct  1203  GEWKFTGSNYYYPEPITDKNSVVMISCAVNYTKAPEVFLNNSIPNLPDFKEELDKWFKNQ  1262

Query  1160  TS--PDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIW  1217
             TS  PD+ L D   +N + +++  E++R+ +  K LNES I+L+E+G YE Y+KWPWY+W
Sbjct  1263  TSIAPDLSL-DFEKLNVTFLDLTYEMNRIQDAIKKLNESYINLKEVGTYEMYVKWPWYVW  1321

Query  1218  LGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCC  1254
             L  + GL  + +  ++                CGSCC
Sbjct  1322  L--LIGLAGVAVCVLLFFICCCTGCGSCCFRKCGSCC  1356


 Score = 90.5 bits (223),  Expect = 8e-17, Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 80/178 (45%), Gaps = 5/178 (3%)

Query  259  TAGAAA---YYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQT  315
            TAG+     Y+V  L  R +L  +NE G IT AVDCA   +SE KC  +S     G+Y  
Sbjct  249  TAGSTLLPLYWVTPLLKRQYLFNFNEKGVITSAVDCASSYISEIKCKTQSLLPSTGVYDL  308

Query  316  SNFRVQPTESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASF  374
            S + VQP   +  R PN+ + C   E   A    S   W R+   NC  + S L      
Sbjct  309  SGYTVQPVGVVYRRVPNLPD-CKIEEWLTAKSVPSPLNWERRTFQNCNFNLSSLLRYVQA  367

Query  375  STFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGC  432
             +  C  +  +K+  +CF +V  D F I       +  G +G +   NYK+    T C
Sbjct  368  ESLSCNNIDASKVYGMCFGSVSVDKFAIPRSRQIDLQIGNSGFLQTANYKIDTAATSC  425


>sp|P22432|SPIKE_CVM4 Spike glycoprotein OS=Murine coronavirus 
(strain 4) OX=12760 GN=S PE=3 SV=1
Length=1376

 Score = 459 bits (1180),  Expect = 5e-138, Method: Compositional matrix adjust.
 Identities = 284/775 (37%), Positives = 416/775 (54%), Gaps = 57/775 (7%)

Query  530   STNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILDIT  588
             +T +    CV ++  G+TG GV  E    +   +Q    D+    +  RD  T +   I 
Sbjct  624   NTEVATGVCVRYDLYGITGQGVFKEVKADYYNSWQALLYDVNGNLNGFRDLTTNKTYTIR  683

Query  589   PCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAG  648
              C  G VS        + + A+LY+++NC+ V     + +  P         N F +  G
Sbjct  684   SCYSGRVSAAY--HKEAPEPALLYRNINCSYVFTNNISREENPL--------NYFDSYLG  733

Query  649   CLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYT----MSLGAE  702
             C++ A++  +     CD+ +GAG+C  Y       RRAR   S      T    M +   
Sbjct  734   CVVNADNRTDEALPNCDLRMGAGLCVDYSKS----RRARRSVSTGYRLTTFEPYMPMLVN  789

Query  703   NSVAYSNN--SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFC  760
             +SV        + IPTNFTI    E + +   K ++DC  ++CGD+  C   L++YGSFC
Sbjct  790   DSVQSVGGLYEMQIPTNFTIGHHEEFIQIRAPKVTIDCAAFVCGDNAACRQQLVEYGSFC  849

Query  761   TQLNRALTGIAVEQDKNTQEVFAQVKQ----IYKTP-----PIKDFGGFNFSQILP----  807
               +N  L  +    D    +V + + Q      + P     PI D    NFS +L     
Sbjct  850   DNVNAILNEVNNLLDNMQLQVASALMQGVTISSRLPDGISGPIDDI---NFSPLLGCIGS  906

Query  808   -------DPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTV  860
                     PS    RS IEDLLF+KV L+D GF++ Y +C G    RDL+C Q FNG+ V
Sbjct  907   TCAEDGNGPSAIRGRSAIEDLLFDKVKLSDVGFVEAYNNCTGGQEVRDLLCVQSFNGIKV  966

Query  861   LPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQ  920
             LPP+L++  I+ YT+   A  +   WT  AG    +PF++ + YR NG+GVT NVL ENQ
Sbjct  967   LPPVLSESQISGYTAGATAAAMFPPWTAAAG----VPFSLNVQYRINGLGVTMNVLSENQ  1022

Query  921   KLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDI  980
             K+IA+ FN+A+G IQ+   +T SALGK+Q VVN NA+ALN L+ QLS+ FGAIS+ L +I
Sbjct  1023  KMIASAFNNALGAIQEGFDATNSALGKIQSVVNANAEALNNLLNQLSNRFGAISASLQEI  1082

Query  981   LSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV  1040
             L+RLD VEA+ QIDRLI GRL +L  Y+++QL  +  I+ SA  A  K++ECV  Q+ R+
Sbjct  1083  LTRLDAVEAKAQIDRLINGRLTALNAYISKQLSDSTLIKFSAAQAIEKVNECVKSQTTRI  1142

Query  1041  DFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNG  1099
             +FCG G H++S  Q+AP+G+ F+H +YVP   K    +P +C  G +   P+ G FV + 
Sbjct  1143  NFCGNGNHILSLVQNAPYGLCFIHFSYVPTSFKTANVSPGLCISGDRGLAPKAGYFVQDN  1202

Query  1100  THWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNH  1159
               W  T  N+Y P+ IT  N+ V  +C V          +   P L  FKEELDK+FKN 
Sbjct  1203  GEWKFTGSNYYYPEPITDKNSVVMISCAVNYTKAPEVFLNNSIPNLPDFKEELDKWFKNQ  1262

Query  1160  TS--PDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIW  1217
             TS  PD+ L D   +N + +++  E++R+ +  K LNES I+L+E+G YE Y+KWPWY+W
Sbjct  1263  TSIAPDLSL-DFEKLNVTFLDLTYEMNRIQDAIKKLNESYINLKEVGTYEMYVKWPWYVW  1321

Query  1218  LGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCC-KFDEDDSEPVLKGVKLH  1271
             L  + GL  + +  ++                CGSCC ++       V+  +  H
Sbjct  1322  L--LIGLAGVAVCVLLFFICCCTGCGSCCFRKCGSCCDEYGGHQDSIVIHNISAH  1374


 Score = 92.0 bits (227),  Expect = 3e-17, Method: Compositional matrix adjust.
 Identities = 124/470 (26%), Positives = 184/470 (39%), Gaps = 84/470 (18%)

Query  1    MFVFLVLLP--------LVSSQCVNLTTRTQLPPAYTN-----SFTRGVYYP-DKVFRSS  46
            +FVF++LLP            Q VN        P+ +      S   G YY  D+V+ ++
Sbjct  2    LFVFILLLPSCLGYIGDFRCIQTVNYNGNNASAPSISTEAVDVSKGLGTYYVLDRVYLNA  61

Query  47   VLHSTQDLFLPFFSNVTWFHAIHVSGTN--GTKRFDNPVL-PFNDGVYF-----------  92
             L  T   + P   + + +  + ++GTN      F  P L  FNDG++            
Sbjct  62   TLLLTG--YYPV--DGSNYRNLALTGTNTLSLTWFKPPFLSEFNDGIFAKVQNLKTNTPT  117

Query  93   -ASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKS  151
             A++    I+ G +FG T  S T  L   NN   ++  VC +  C  P+     + N   
Sbjct  118  GATSYFPTIVIGSLFGNT--SYTVVLEPYNNI--IMASVCTYTICQLPYTPCKPNTNGNR  173

Query  152  ----W-MESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSK  206
                W  + +  +     N TF  V+ P+L               F F    G F  Y  
Sbjct  174  VIGFWHTDVKPPICLLKRNFTFN-VNAPWLY--------------FHFYQQGGTFYAYYA  218

Query  207  HTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAA--  264
              P           SA   L  + IG  +T++  L  +     TP       TAG+    
Sbjct  219  DKP-----------SATTFLFSVYIGDILTQYFVLPFI----CTP-------TAGSTLLP  256

Query  265  -YYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPT  323
             Y+V  L  R +L  +NE G IT AVDCA   +SE KC  +S     G+Y  S + VQP 
Sbjct  257  LYWVTPLLKRQYLFNFNEKGVITSAVDCASSYISEIKCKTQSLLPSTGVYDLSGYTVQPV  316

Query  324  ESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGV  382
              +  R PN+ + C   E   A    S   W R+   NC  + S L       +  C  +
Sbjct  317  GVVYRRVPNLPD-CKIEEWLTAKSVPSPLNWERRTFQNCNFNLSSLLRYVQAESLSCNNI  375

Query  383  SPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGC  432
              +K+  +CF +V  D F I       +  G +G +   NYK+    T C
Sbjct  376  DASKVYGMCFGSVSVDKFAIPRSRQIDLQIGNSGFLQTANYKIDTAATSC  425


>sp|Q9IKD1|SPIKE_CVRSD Spike glycoprotein OS=Rat coronavirus (strain 
681) OX=33740 GN=S PE=3 SV=1
Length=1360

 Score = 455 bits (1171),  Expect = 6e-137, Method: Compositional matrix adjust.
 Identities = 285/774 (37%), Positives = 419/774 (54%), Gaps = 63/774 (8%)

Query  530   STNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILDIT  588
             +T +V   CV ++  G TG GV  E    +   +Q    D+    +  RD  T +   + 
Sbjct  611   NTEVVTGVCVKYDLYGSTGQGVFKEVKADYYNSWQNLLYDVNGNLNGFRDIVTNKTYLLR  670

Query  589   PCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAG  648
              C  G VS        + + A+LY+++ C  V     + + TP         N F +  G
Sbjct  671   SCYSGRVSAAY--HQDAPEPALLYRNLKCDYVFNNNISREETPL--------NYFDSYLG  720

Query  649   CLIGAEHVNNSYE-----CDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAEN  703
             C+I A+   NS E     CD+ +G+G+C +Y     + R  RSV++     Y ++     
Sbjct  721   CVINAD---NSTEQSVDACDLRMGSGLCVNYSI---AHRARRSVST----GYKLTTFEPF  770

Query  704   SVAYSNNSIA---------IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLL  754
             +V+  N+S+          IPTNFTI+   E +     K ++DC  ++CGD T C   L+
Sbjct  771   TVSIVNDSVESVGGLYEMQIPTNFTIASHQEFIQTRSPKVTIDCAAFVCGDYTACRQQLV  830

Query  755   QYGSFCTQLNRALTGIAVEQDK-NTQEVFAQVKQIYKTPPIKD-----FGGFNFSQIL--  806
              YGSFC  +N  L  +    D    Q   A ++ +  +  + D         NFS +L  
Sbjct  831   DYGSFCDNINAILGEVNNLIDTMQLQVASALIQGVTLSSRLADGISGQIDDINFSPLLGC  890

Query  807   --PDPSKPSK----RSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTV  860
                D S+ +K    RS IED+LF+KV L+D GF++ Y +C G    RDL+C Q FNG+ V
Sbjct  891   LGSDCSEGTKAAQGRSAIEDVLFDKVKLSDVGFVESYNNCTGGQEVRDLLCVQSFNGIKV  950

Query  861   LPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQ  920
             LPP+L++  I+ YT+   A  +   W+  AG    +PFA+ + YR NG+GVT NVL ENQ
Sbjct  951   LPPVLSESQISGYTAGATASAMFPPWSAAAG----VPFALSVQYRINGLGVTMNVLSENQ  1006

Query  921   KLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDI  980
             K+IA+ FN+AIG IQ+   +T SAL K+Q VVN NA+ALN L+ QLS+ FGAIS+ L +I
Sbjct  1007  KMIASSFNNAIGAIQEGFDATNSALAKIQSVVNANAEALNNLLNQLSNRFGAISASLQEI  1066

Query  981   LSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV  1040
             LSRLD +EA+ QIDRLI GRL +L  YV++QL     I+ SA  A  K++ECV  QS R+
Sbjct  1067  LSRLDALEAQAQIDRLINGRLTALNAYVSKQLSDMTLIKVSAAQAIEKVNECVKSQSPRI  1126

Query  1041  DFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNG  1099
             +FCG G H++S  Q+AP+G+ F+H +YVP        +P +C  G +   P+ G FV + 
Sbjct  1127  NFCGNGNHILSLVQNAPYGLYFIHFSYVPTSFTTVNVSPGLCISGDRGLAPKAGYFVQDH  1186

Query  1100  THWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNH  1159
               W  T  N+Y P+ IT  N+ V  +C V          +     L  FKEELDK+FKN 
Sbjct  1187  GEWKFTGSNYYYPESITDKNSVVMSSCAVNYTKAPEVFLNTSITNLPDFKEELDKWFKNQ  1246

Query  1160  TS--PDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIW  1217
             TS  PD+   DI  +N + +++  E++R+ +  KNLNES I+L+E+G YE Y+KWPWY+W
Sbjct  1247  TSIVPDLSF-DIGKLNVTFLDLSYEMNRIQDAIKNLNESYINLKEIGTYEMYVKWPWYVW  1305

Query  1218  LGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLH  1271
             L  + GL  + +  ++                CG+CC    D+      G+ +H
Sbjct  1306  L--LIGLAGVAVCVLLFFICCCTGCGSCCFKKCGNCC----DEYGGRQAGIVIH  1353


 Score = 89.4 bits (220),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 55/178 (31%), Positives = 81/178 (46%), Gaps = 6/178 (3%)

Query  259  TAGAAA--YYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTS  316
            T+G ++  Y+V  L  R +L  +N+ G IT AVDCA    SE KC  +S     G+Y  S
Sbjct  250  TSGVSSPQYWVTPLVKRQYLFNFNQKGIITSAVDCASSYTSEIKCKTQSMNPNTGVYDLS  309

Query  317  NFRVQPTESIVRFPNITNL--CPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASF  374
             + VQP   + R   + NL  C   E   A    S   W RK   NC  + S L      
Sbjct  310  GYTVQPVGLVYR--RVRNLPDCKIEEWLAANTVPSPLNWERKTFQNCNFNLSSLLRFVQA  367

Query  375  STFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGC  432
             +  C  +  +K+  +CF ++  D F I       +  G++G +  +NYK+    T C
Sbjct  368  ESLSCSNIDASKVYGMCFGSISIDKFAIPNSRRVDLQLGKSGLLQSFNYKIDTRATSC  425


>sp|Q5MQD0|SPIKE_CVHN1 Spike glycoprotein OS=Human coronavirus 
HKU1 (isolate N1) OX=443239 GN=S PE=1 SV=1
Length=1356

 Score = 452 bits (1164),  Expect = 5e-136, Method: Compositional matrix adjust.
 Identities = 265/748 (35%), Positives = 413/748 (55%), Gaps = 45/748 (6%)

Query  528   KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD  586
             + +T +  + CV+++  G+TG G+  E +  +   +Q    D        +D  T +  +
Sbjct  611   QPNTEVFTDVCVDYDLYGITGQGIFKEVSAVYYNSWQNLLYDSNGNIIGFKDFVTNKTYN  670

Query  587   ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTR  646
             I PC  G VS       +S  +A+LY+++ C+ V      + ++ T + Y      F + 
Sbjct  671   IFPCYAGRVSAAFHQNASS--LALLYRNLKCSYV-----LNNISLTTQPY------FDSY  717

Query  647   AGCLIGAEHVNN--SYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS  704
              GC+  A+++ +     C + +G+G C  Y + ++S  R +  +  +  +Y        +
Sbjct  718   LGCVFNADNLTDYSVSSCALRMGSGFCVDYNSPSSSSSRRKRRSISA--SYRFVTFEPFN  775

Query  705   VAYSNNSI---------AIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQ  755
             V++ N+SI          IPTNFTI    E +  +  K ++DC++++C +   C +LL +
Sbjct  776   VSFVNDSIESVGGLYEIKIPTNFTIVGQEEFIQTNSPKVTIDCSLFVCSNYAACHDLLSE  835

Query  756   YGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQ------IYKTPPIKDFGGFNFSQI---L  806
             YG+FC  +N  L  +    D     V   + Q         T    D    NF  +   L
Sbjct  836   YGTFCDNINSILDEVNGLLDTTQLHVADTLMQGVTLSSNLNTNLHFDVDNINFKSLVGCL  895

Query  807   PDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLT  866
                   S RSF EDLLF+KV L+D GF++ Y +C G    RDL+C Q FNG+ VLPP+L+
Sbjct  896   GPHCGSSSRSFFEDLLFDKVKLSDVGFVEAYNNCTGGSEIRDLLCVQSFNGIKVLPPILS  955

Query  867   DEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ  926
             +  I+ YT+A     +   W+  AG    IPF++ + YR NG+GVT +VL +NQKLIA  
Sbjct  956   ESQISGYTTAATVAAMFPPWSAAAG----IPFSLNVQYRINGLGVTMDVLNKNQKLIATA  1011

Query  927   FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDK  986
             FN+A+  IQ+  S+T SAL K+Q VVN NAQALN+L++QL + FGAISS L +ILSRLD 
Sbjct  1012  FNNALLSIQNGFSATNSALAKIQSVVNSNAQALNSLLQQLFNKFGAISSSLQEILSRLDA  1071

Query  987   VEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKG  1046
             +EA+VQIDRLI GRL +L  YV+QQL   + ++  A LA  K++ECV  QS R++FCG G
Sbjct  1072  LEAQVQIDRLINGRLTALNAYVSQQLSDISLVKFGAALAMEKVNECVKSQSPRINFCGNG  1131

Query  1047  YHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHF-PREGVFVSNGTHWFVT  1105
              H++S  Q+AP+G++F+H +Y P   K    +P +C  G     P++G F+ +  HW  T
Sbjct  1132  NHILSLVQNAPYGLLFMHFSYKPISFKTVLVSPGLCISGDVGIAPKQGYFIKHNDHWMFT  1191

Query  1106  QRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTS--PD  1163
               ++Y P+ I+  N      C V          +   P+L  F+ EL  +FKN TS  P+
Sbjct  1192  GSSYYYPEPISDKNVVFMNTCSVNFTKAPLVYLNHSVPKLSDFESELSHWFKNQTSIAPN  1251

Query  1164  VDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAG  1223
             + L ++  INA+ +++  E++ + E  K+LN S I+L+++G YE Y+KWPWY+WL     
Sbjct  1252  LTL-NLHTINATFLDLYYEMNLIQESIKSLNNSYINLKDIGTYEMYVKWPWYVWLLISFS  1310

Query  1224  LIAIVMVTIMLCCMTSCCS-CLKGCCSC  1250
              I  +++   +CC T C S C   C +C
Sbjct  1311  FIIFLVLLFFICCCTGCGSACFSKCHNC  1338


 Score = 87.4 bits (215),  Expect = 6e-16, Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 2/173 (1%)

Query  265  YYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTE  324
            Y+V  L  R +LLK++  G IT+AVDC+    SE +C  KS     G+Y  S F V+P  
Sbjct  256  YWVTPLSKRQYLLKFDNRGVITNAVDCSSSFFSEIQCKTKSLLPNTGVYDLSGFTVKPVA  315

Query  325  SI-VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVS  383
            ++  R P++ + C   +  N     S   W RK  SNC  + S L       +F C    
Sbjct  316  TVHRRIPDLPD-CDIDKWLNNFNVPSPLNWERKIFSNCNFNLSTLLRLVHTDSFSCNNFD  374

Query  384  PTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAW  436
             +K+   CF ++  D F I       +  G +G +   NYK+    + C + +
Sbjct  375  ESKIYGSCFKSIVLDKFAIPNSRRSDLQLGSSGFLQSSNYKIDTTSSSCQLYY  427


>sp|P15423|SPIKE_CVH22 Spike glycoprotein OS=Human coronavirus 
229E OX=11137 GN=S PE=1 SV=1
Length=1173

 Score = 364 bits (934),  Expect = 3e-105, Method: Compositional matrix adjust.
 Identities = 242/779 (31%), Positives = 369/779 (47%), Gaps = 101/779 (13%)

Query  521   PATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQ  580
             P  V G     N+  +KC  +N   ++G GV+  SN  FL    +     +     +D  
Sbjct  429   PQPVEGVSSFMNVTLDKCTKYNIYDVSGVGVIRVSNDTFLNGITYTSTSGNLL-GFKDVT  487

Query  581   TLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGS  640
                I  ITPC            N  +Q+ V  Q         A+    L+  +  Y   S
Sbjct  488   KGTIYSITPC------------NPPDQLVVYQQ---------AVVGAMLSENFTSYGF-S  525

Query  641   NVFQTRAGCLIGAEHVNNSYECDIPI----GAGICASYQTQTNSPRRARSVASQSIIAYT  696
             NV +            N +Y C   +      G+CA        PR     +  +I+   
Sbjct  526   NVVELPKFFYAS----NGTYNCTDAVLTYSSFGVCADGSIIAVQPRNVSYDSVSAIVTAN  581

Query  697   MSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQY  756
             +S               IP+N+T SV  E L ++ T   VDC+ Y+C  +  C  LL QY
Sbjct  582   LS---------------IPSNWTTSVQVEYLQITSTPIVVDCSTYVCNGNVRCVELLKQY  626

Query  757   GSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPD----PSKP  812
              S C  +  AL   A  +  +  E+    K+ +    +  FG +N S ++P      S+ 
Sbjct  627   TSACKTIEDALRNSARLESADVSEMLTFDKKAFTLANVSSFGDYNLSSVIPSLPTSGSRV  686

Query  813   SKRSFIEDLLFNKVTLADAGFI-KQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA  871
             + RS IED+LF+K+  +  G +   Y  C   ++  DL CAQ +NG+ VLP +   E +A
Sbjct  687   AGRSAIEDILFSKLVTSGLGTVDADYKKCTKGLSIADLACAQYYNGIMVLPGVADAERMA  746

Query  872   QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAI  931
              YT +L+ G    G T    +A+ IPF++ +  R N + +  +VL ENQK++A  FN A+
Sbjct  747   MYTGSLIGGIALGGLT----SAVSIPFSLAIQARLNYVALQTDVLQENQKILAASFNKAM  802

Query  932   GKIQDS--------------LSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVL  977
               I D+              L + A+AL K+QDVVNQ   +LN L  QL  NF AISS +
Sbjct  803   TNIVDAFTGVNDAITQTSQALQTVATALNKIQDVVNQQGNSLNHLTSQLRQNFQAISSSI  862

Query  978   NDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQS  1037
               I  RLD ++A+ Q+DRLITGRL +L  +V+  L +  E+RAS  LA  K++ECV  QS
Sbjct  863   QAIYDRLDTIQADQQVDRLITGRLAALNVFVSHTLTKYTEVRASRQLAQQKVNECVKSQS  922

Query  1038  KRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHF----PREG  1093
             KR  FCG G H+ S   +AP G+VFLH   +P Q K+      +C DG   +    P   
Sbjct  923   KRYGFCGNGTHIFSIVNAAPEGLVFLHTVLLPTQYKDVEAWSGLCVDGTNGYVLRQPNLA  982

Query  1094  VFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPE---LDSFKE  1150
             ++   G ++ +T R  +EP+I T  +     NC+V    ++ +    + PE   ++   +
Sbjct  983   LY-KEGNYYRITSRIMFEPRIPTMADFVQIENCNVTFVNISRSELQTIVPEYIDVNKTLQ  1041

Query  1151  ELDKYFKNHTSPDVDLGDISGINASVVNIQKEID--------------RLNEVAKNLNES  1196
             EL     N+T PD+    +   N +++N+  EI               +L  +  N+N +
Sbjct  1042  ELSYKLPNYTVPDL---VVEQYNQTILNLTSEISTLENKSAELNYTVQKLQTLIDNINST  1098

Query  1197  LIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCC-------SCLKGCC  1248
             L+DL+ L + E YIKWPW++WL     LI +V + ++ CC T CC       S ++GCC
Sbjct  1099  LVDLKWLNRVETYIKWPWWVWLCISVVLIFVVSMLLLCCCSTGCCGFFSCFASSIRGCC  1157


>sp|P12650|SPIKE_IBVK Spike glycoprotein OS=Avian infectious bronchitis 
virus (strain KB8523) OX=11126 GN=S PE=3 SV=1
Length=1162

 Score = 352 bits (904),  Expect = 2e-101, Method: Compositional matrix adjust.
 Identities = 202/543 (37%), Positives = 296/543 (55%), Gaps = 22/543 (4%)

Query  711   SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGI  770
             ++ IP +F ++VT E +   M K  ++C  YICG+S EC NL  QYG  C  +   +  +
Sbjct  583   NVLIPNSFNLTVTDEYIQTRMDKVQINCLQYICGNSLECRNLFQQYGPVCDNMLSVVNSV  642

Query  771   AVEQDKNTQEVFAQVKQI-YKTPPIKDF--GGFNFSQILPDPSKPSKRSFIEDLLFNKVT  827
               ++D      ++  K   + TP + +   G FN S  L  PS P +RSFIEDLLF  V 
Sbjct  643   GQKEDMELLNFYSSTKPAGFNTPVLSNVSTGEFNISLFLTTPSSPRRRSFIEDLLFTSVE  702

Query  828   LADAGFIKQYGDCLGDIAA--RDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSG  885
                      Y +C        +DL+CA+++NGL VLPP++T EM   YTS+L+A     G
Sbjct  703   SVGLPTDDAYKNCTAGPLGFLKDLVCAREYNGLLVLPPIITAEMQTLYTSSLVASMAFGG  762

Query  886   WTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASAL  945
              T    AA  IPFA Q+  R N +G+TQ++L +NQ+ IA  FN AIG +Q+   ST+ AL
Sbjct  763   IT----AAGAIPFATQLQARINHLGITQSLLLKNQEKIAASFNKAIGHMQEGFRSTSLAL  818

Query  946   GKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQ  1005
              ++QDVVN+ +  L   +  L+ NFGAISSV+ +I  +LD ++A  Q+DRLITGRL SL 
Sbjct  819   QQIQDVVNKQSAILTETMASLNKNFGAISSVIQEIYLQLDAIQANAQVDRLITGRLSSLS  878

Query  1006  TYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHV  1065
                + +      +     LA  K++ECV  QS R  FCG G H+++ PQ+AP+G+VF+H 
Sbjct  879   VLASAKQAEYIRVSQQRELATQKINECVKSQSTRYSFCGNGRHVLTIPQNAPNGIVFIHF  938

Query  1066  TYVPAQEKNFTTAPAIC-----HDGKAHFP--REGVFVSNGTHWFVTQRNFYEPQIITTD  1118
             TY P    N T     C         A  P    G+F+     +++T R+ Y P+ IT  
Sbjct  939   TYTPESFVNVTAIVGFCVKPNNASQYAIVPVNGRGIFIQVNDSYYITARDMYMPRHITAG  998

Query  1119  NTFVSGNCDVVIGIVNNTVYDP-LQPELDSFKEELDKYF--KNHTSPDVDLGDISGINAS  1175
             +     +C      VN TV    ++ +   F +EL K++    +  PD D  + +     
Sbjct  999   DIVTLTSCQANYVSVNKTVITTFVENDDFDFDDELSKWWIETKYELPDFDQFNYT---IP  1055

Query  1176  VVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLC  1235
             V+NI  +ID++ EV K LN+SLIDL+ L   + YIKWPWY+WL      I  +++   + 
Sbjct  1056  VLNITYDIDKIEEVIKGLNDSLIDLETLSILKTYIKWPWYVWLAIAFATIIFILILGWVF  1115

Query  1236  CMT  1238
              MT
Sbjct  1116  FMT  1118


>sp|P12651|SPIKE_IBVM Spike glycoprotein OS=Avian infectious bronchitis 
virus (strain M41) OX=11127 GN=S PE=3 SV=1
Length=1162

 Score = 349 bits (896),  Expect = 3e-100, Method: Compositional matrix adjust.
 Identities = 198/543 (36%), Positives = 297/543 (55%), Gaps = 22/543 (4%)

Query  711   SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGI  770
             ++ IP +F ++VT E +   M K  ++C  Y+CG+S +C +L  QYG  C  +   +  I
Sbjct  583   NVLIPNSFNLTVTDEYIQTRMDKVQINCLQYVCGNSLDCRDLFQQYGPVCDNILSVVNSI  642

Query  771   AVEQDKNTQEVFAQVKQI-YKTPPIKDF--GGFNFSQILPDPSKPSKRSFIEDLLFNKVT  827
               ++D      ++  K   + TP + +   G FN S +L  PS P +RSFIEDLLF  V 
Sbjct  643   GQKEDMELLNFYSSTKPAGFNTPFLSNVSTGEFNISLLLTTPSSPRRRSFIEDLLFTSVE  702

Query  828   LADAGFIKQYGDCLGDIAA--RDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSG  885
                      Y +C        +DL CA+++NGL VLPP++T EM   YTS+L+A     G
Sbjct  703   SVGLPTDDAYKNCTAGPLGFLKDLACAREYNGLLVLPPIITAEMQTLYTSSLVASMAFGG  762

Query  886   WTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASAL  945
              T    AA  IPFA Q+  R N +G+TQ++L +NQ+ IA  FN AIG++Q+   ST+ AL
Sbjct  763   IT----AAGAIPFATQLQARINHLGITQSLLLKNQEKIAASFNKAIGRMQEGFRSTSLAL  818

Query  946   GKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQ  1005
              ++QDVVN+ +  L   +  L+ NFGAISSV+ +I  +LD ++A  Q+DRLITGRL SL 
Sbjct  819   QQIQDVVNKQSAILTETMASLNKNFGAISSVIQEIYQQLDAIQANAQVDRLITGRLSSLS  878

Query  1006  TYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHV  1065
                + +      +     LA  K++ECV  QS R  FCG G H+++ PQ+AP+G+VF+H 
Sbjct  879   VLASAKQAEHIRVSQQRELATQKINECVKSQSIRYSFCGNGRHVLTIPQNAPNGIVFIHF  938

Query  1066  TYVPAQEKNFTTAPAIC-----HDGKAHFPR--EGVFVSNGTHWFVTQRNFYEPQIITTD  1118
             +Y P    N T     C         A  P    G+F+     +++T R+ Y P+ IT  
Sbjct  939   SYTPDSFVNVTAIVGFCVKPANASQYAIVPANGRGIFIQVNGSYYITARDMYMPRAITAG  998

Query  1119  NTFVSGNCDVVIGIVNNTVYDP-LQPELDSFKEELDKYFKN--HTSPDVDLGDISGINAS  1175
             +     +C      VN TV    +  +   F +EL K++ +  H  PD D  + +     
Sbjct  999   DIVTLTSCQANYVSVNKTVITTFVDNDDFDFNDELSKWWNDTKHELPDFDKFNYT---VP  1055

Query  1176  VVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLC  1235
             +++I  EIDR+  V + LN+SLIDL++L   + YIKWPWY+WL      I  +++   + 
Sbjct  1056  ILDIDSEIDRIQGVIQGLNDSLIDLEKLSILKTYIKWPWYVWLAIAFATIIFILILGWVF  1115

Query  1236  CMT  1238
              MT
Sbjct  1116  FMT  1118


>sp|P05135|SPIKE_IBV6 Spike glycoprotein OS=Avian infectious bronchitis 
virus (strain 6/82) OX=11121 GN=S PE=3 SV=1
Length=1163

 Score = 347 bits (890),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 202/543 (37%), Positives = 296/543 (55%), Gaps = 22/543 (4%)

Query  711   SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGI  770
             ++ IP +F ++VT E +   M K  ++C  Y+CG+S EC  L  QYG  C  +   +  +
Sbjct  584   NVLIPDSFNLTVTDEYIQTRMDKVQINCLQYVCGNSLECRKLFQQYGPVCDNILSVVNSV  643

Query  771   AVEQDKNTQEVFAQVK-QIYKTPPIKDF--GGFNFSQILPDPSKPSKRSFIEDLLFNKVT  827
               ++D      ++  K   + TP + +   G FN S +L  PS  S RSFIEDLLF  V 
Sbjct  644   GQKEDMELLYFYSSTKPSGFNTPVLSNVSTGEFNISLLLTPPSSASGRSFIEDLLFTSVE  703

Query  828   LADAGFIKQYGDCLGDIAA--RDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSG  885
                      Y  C        +DL CA+++NGL VLPP++T EM   YTS+L+A     G
Sbjct  704   SVGLPTDDAYKKCTAGPLGFLKDLACAREYNGLLVLPPIITAEMQTLYTSSLVASMAFGG  763

Query  886   WTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASAL  945
              T  AGA   IPFA Q+  R N +G+TQ++L++NQ+ IA  FN AIG +Q+   ST+ AL
Sbjct  764   IT-SAGA---IPFATQLQARINHLGITQSLLFKNQEKIAASFNKAIGHMQEGFRSTSLAL  819

Query  946   GKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQ  1005
              ++QDVVN+ +  L   +  L+ NFGAISSVL DI  +LD ++A+ Q+DR+ITGRL SL 
Sbjct  820   QQIQDVVNKQSSILTETMASLNKNFGAISSVLQDIYQQLDSIQADAQVDRIITGRLSSLS  879

Query  1006  TYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHV  1065
                + +      +     LA  K++ECV  QS R  FCG G H+++ PQ+AP+G+VF+H 
Sbjct  880   VLASAKQAEYYRVSQQRELATQKINECVKSQSIRYSFCGNGRHVLTIPQNAPNGIVFIHF  939

Query  1066  TYVPAQEKNFTTAPAICHDGK-----AHFPR--EGVFVSNGTHWFVTQRNFYEPQIITTD  1118
             TY P    N T     C +       A  P    G+F+     +++T R+ Y P+ IT  
Sbjct  940   TYTPESFVNVTAIVGFCVNPANASQYAIVPANGRGIFIQVNGSYYITARDMYMPRDITAG  999

Query  1119  NTFVSGNCDVVIGIVNNTVYDP-LQPELDSFKEELDKYFKN--HTSPDVDLGDISGINAS  1175
             +     +C      VN TV    +  +   F +EL K++ +  H  PD D  + +     
Sbjct  1000  DIVTLTSCQANYVSVNKTVITTFVDNDDFDFDDELSKWWNDTKHELPDFDEFNYT---VP  1056

Query  1176  VVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLC  1235
             +++I  EIDR+  V + LN+SLIDL+ L   + YIKWPWY+WL      I  ++V   + 
Sbjct  1057  ILDIGSEIDRIQGVIQGLNDSLIDLETLSILKTYIKWPWYVWLAIAFLTIIFILVLCWIF  1116

Query  1236  CMT  1238
              MT
Sbjct  1117  FMT  1119


>sp|Q6Q1S2|SPIKE_CVHNL Spike glycoprotein OS=Human coronavirus 
NL63 OX=277944 GN=S PE=1 SV=1
Length=1356

 Score = 349 bits (895),  Expect = 4e-99, Method: Compositional matrix adjust.
 Identities = 253/822 (31%), Positives = 379/822 (46%), Gaps = 113/822 (14%)

Query  488   CYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLT  547
             C FPL++     +  +    Y        +   P  V G ++ +NLV N C  +N     
Sbjct  577   CNFPLEATWHYTSYTIVGALYVTWSEGNSITGVPYPVSGIREFSNLVLNNCTKYNIYDYV  636

Query  548   GTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQ  607
             GTG++  SN+           +A     V +   L  L     S G + ++TP  N  +Q
Sbjct  637   GTGIIRSSNQS----------LAGGITYVSNSGNL--LGFKNVSTGNIFIVTP-CNQPDQ  683

Query  608   VAVLYQDV-----NCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYEC  662
             VAV  Q +        E    +      P +   S G N       C       +N    
Sbjct  684   VAVYQQSIIGAMTAVNESRYGLQNLLQLPNFYYVSNGGN------NCTTAVMTYSN----  733

Query  663   DIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISV  722
                   GICA        PR +      +II   +S               IP+N+T SV
Sbjct  734   -----FGICADGSLIPVRPRNSSDNGISAIITANLS---------------IPSNWTTSV  773

Query  723   TTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVF  782
               E L ++ T   VDC  Y+C  +  C NLL QY S C  +  AL   A  +  +   + 
Sbjct  774   QVEYLQITSTPIVVDCATYVCNGNPRCKNLLKQYTSACKTIEDALRLSAHLETNDVSSML  833

Query  783   AQVKQIYKTPPIKDFGGFNFSQILPD----PSKPSKRSFIEDLLFNKVTLADAGFIK-QY  837
                   +    +  FG +N S +LP      S+ + RS +EDLLF+KV  +  G +   Y
Sbjct  834   TFDSNAFSLANVTSFGDYNLSSVLPQRNIRSSRIAGRSALEDLLFSKVVTSGLGTVDVDY  893

Query  838   GDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIP  897
               C   ++  DL CAQ +NG+ VLP +   E +A YT +L+ G +  G T    +A  IP
Sbjct  894   KSCTKGLSIADLACAQYYNGIMVLPGVADAERMAMYTGSLIGGMVLGGLT----SAAAIP  949

Query  898   FAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKI-------QDSLSSTAS-------  943
             F++ +  R N + +  +VL ENQK++A  FN AI  I        D+++ TA        
Sbjct  950   FSLALQARLNYVALQTDVLQENQKILAASFNKAINNIVASFSSVNDAITQTAEAIHTVTI  1009

Query  944   ALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQS  1003
             AL K+QDVVNQ   ALN L  QL  NF AIS+ +  I  RLD ++A+ Q+DRLITGRL +
Sbjct  1010  ALNKIQDVVNQQGSALNHLTSQLRHNFQAISNSIQAIYDRLDSIQADQQVDRLITGRLAA  1069

Query  1004  LQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFL  1063
             L  +V+Q L +  E+R S  LA  K++ECV  QS R  FCG G H+ S   SAP G++FL
Sbjct  1070  LNAFVSQVLNKYTEVRGSRRLAQQKINECVKSQSNRYGFCGNGTHIFSIVNSAPDGLLFL  1129

Query  1064  HVTYVPAQEKNFTTAPAICHDGKAHF----PREGVFVSNGTHWFVTQRNFYEPQIITTDN  1119
             H   +P   KN      IC DG   +    P   ++  NG  + VT R  ++P++    +
Sbjct  1130  HTVLLPTDYKNVKAWSGICVDGIYGYVLRQPNLVLYSDNGV-FRVTSRVMFQPRLPVLSD  1188

Query  1120  TFVSGNCDVVIGIVNNTVYDPLQPE-------LDSFKEELDKYFKNHTSPDVDLGDISGI  1172
                  NC+V    ++      + P+       L  F + L KY K    P+ DL   +  
Sbjct  1189  FVQIYNCNVTFVNISRVELHTVIPDYVDVNKTLQEFAQNLPKYVK----PNFDL---TPF  1241

Query  1173  NASVVNIQKEIDRLNEVAKNL--------------NESLIDLQELGKYEQYIKWPWYIWL  1218
             N + +N+  E+ +L     +L              N + +DL+ L ++E YIKWPW++WL
Sbjct  1242  NLTYLNLSSELKQLEAKTASLFQTTVELQGLIDQINSTYVDLKLLNRFENYIKWPWWVWL  1301

Query  1219  GFIAGLIAIVMVTIMLCCMTS----CCSCL----KGCCSCGS  1252
               I+ +  +++  ++ CC+++    CC+CL    +GCC CGS
Sbjct  1302  -IISVVFVVLLSLLVFCCLSTGCCGCCNCLTSSMRGCCDCGS  1342


>sp|P12722|SPIKE_IBVD2 Spike glycoprotein OS=Avian infectious 
bronchitis virus (strain D274) OX=11124 GN=S PE=3 SV=1
Length=1154

 Score = 345 bits (886),  Expect = 5e-99, Method: Compositional matrix adjust.
 Identities = 201/543 (37%), Positives = 294/543 (54%), Gaps = 22/543 (4%)

Query  711   SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGI  770
             ++ IP +F ++VT E +   M K  ++C  Y+CG+S EC  L  QYG  C  +   +  +
Sbjct  584   NVLIPDSFNLTVTDEYIQTRMDKVQINCLQYVCGNSLECRKLFQQYGPVCDNILSVVNSV  643

Query  771   AVEQDKNTQEVFAQVK-QIYKTPPIKDF--GGFNFSQILPDPSKPSKRSFIEDLLFNKVT  827
               ++D      ++  K   + TP + +   G FN S +L  PS  S RSFIEDLLF  V 
Sbjct  644   GQKEDMELLHFYSSTKPSGFNTPVLSNVSTGEFNISLLLTPPSSASGRSFIEDLLFTSVE  703

Query  828   LADAGFIKQYGDCLGDIAA--RDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSG  885
                      Y  C        +DL CA+++NGL VLPP++T EM   YTS+L+A     G
Sbjct  704   SVGLPTDDAYKKCTAGPLGFLKDLACAREYNGLLVLPPIITAEMQTLYTSSLVASMAFGG  763

Query  886   WTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASAL  945
              T   GA   IPFA Q+  R N +G+TQ++L +NQ+ IA  FN AIG +Q+   ST+ AL
Sbjct  764   IT-SVGA---IPFATQLQARINHLGITQSLLLKNQEKIAASFNKAIGHMQEGFRSTSLAL  819

Query  946   GKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQ  1005
              ++QDVVN+ +  L   +  L+ NFGAISSVL DI  +LD ++A+ Q+DR+ITGRL SL 
Sbjct  820   QQIQDVVNKQSSILTETMASLNKNFGAISSVLQDIYQQLDSIQADAQVDRIITGRLSSLS  879

Query  1006  TYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHV  1065
                + +      +     LA  K++ECV  QS R  FCG G H+++ PQ+AP+G+VF+H 
Sbjct  880   VLASAKQAEYYRVSQQRELATQKINECVKSQSIRYSFCGNGRHVLTIPQNAPNGIVFIHF  939

Query  1066  TYVPAQEKNFTTAPAICHDGK-----AHFPR--EGVFVSNGTHWFVTQRNFYEPQIITTD  1118
             TY P    N T     C +       A  P    G+F+     +++T R+ Y P+ IT  
Sbjct  940   TYTPESFVNVTAIVGFCVNPANASQYAIVPANGRGIFIQVNGSYYITARDMYMPRDITAG  999

Query  1119  NTFVSGNCDVVIGIVNNTVYDP-LQPELDSFKEELDKYFKN--HTSPDVDLGDISGINAS  1175
             +     +C      VN TV    +  +   F +EL K++ +  H  PD D  + +     
Sbjct  1000  DIVTLTSCQANYVSVNKTVITTFVDNDDFDFDDELSKWWNDTKHELPDFDEFNYT---VP  1056

Query  1176  VVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLC  1235
             +++I  EIDR+  V + LN+SLIDL+ L   + YIKWPWY+WL      I  +++   L 
Sbjct  1057  ILDIGSEIDRIQGVIQGLNDSLIDLETLSILKTYIKWPWYVWLAIAFATIIFILILGWLF  1116

Query  1236  CMT  1238
              MT
Sbjct  1117  FMT  1119


>sp|P27655|SPIKE_CVPR8 Spike glycoprotein OS=Porcine respiratory 
coronavirus (strain 86/137004 / isolate British) OX=33736 
GN=S PE=3 SV=1
Length=1225

 Score = 344 bits (882),  Expect = 5e-98, Method: Compositional matrix adjust.
 Identities = 255/792 (32%), Positives = 390/792 (49%), Gaps = 119/792 (15%)

Query  516   ELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLP---FQQFGRDI---  569
              ++  P+   G    + L  + C ++N  G TG G++ ++N+  L    +     D+   
Sbjct  440   SIVGVPSDNSGLHDLSVLHLDSCTDYNIYGRTGVGIIRQTNRTLLSGLYYTSLSGDLLGF  499

Query  570   ADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQL  629
              + +D V       I  +TPC     + I  G       A++    +     +A+    +
Sbjct  500   KNVSDGV-------IYSVTPCDVSAQAAIIDG-------AIVGAITSINSELLALTHWTI  545

Query  630   TPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARS  686
             TP +  YS  +       G  IG+    N  +C+  I     G+C +             
Sbjct  546   TPNFYYYSIYNYTNDKTRGTPIGS----NDVDCEPVITYSNIGVCKN-------------  588

Query  687   VASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDS  746
               +   I  T S G    ++  N  + IPTNFTISV  E + V  T  S+DC+ Y+C  +
Sbjct  589   -GALVFINVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGN  645

Query  747   TECSNLLLQYGSFCTQLNRALT-GIAVEQDKNTQEVFAQ-----------------VKQI  788
               C+ LL QY S C  + +AL  G  +E  +    +F                   +  I
Sbjct  646   PRCNKLLTQYVSACQTIEQALAMGARLENMEVDSMLFVSENALKLASVEAFNSSETLDPI  705

Query  789   YKTPPIKDFGGF---NFSQILP-DPSKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGD  843
             YK  P  + GGF       ILP D SK   RS IEDLLF+KV  +  G + + Y  C G 
Sbjct  706   YKEWP--NIGGFWLEGLKYILPSDNSKRKYRSAIEDLLFSKVVTSGLGTVDEDYKRCTGG  763

Query  844   IAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMA  903
                 DL+CAQ +NG+ VLP +   + +  YT++L AG IT G     G A+ IPFA+ + 
Sbjct  764   YDIADLVCAQYYNGIMVLPGVANADKMTMYTASL-AGGITLGAL--GGGAVAIPFAVAVQ  820

Query  904   YRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDS--------------LSSTASALGKLQ  949
              R N + +  +VL +NQ+++A+ FN AIG I  S              L++ A AL K+Q
Sbjct  821   ARLNYVALQTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHQTSRGLTTVAKALAKVQ  880

Query  950   DVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVT  1009
             DVVN   QAL  L  QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L  +V+
Sbjct  881   DVVNTQGQALRHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVS  940

Query  1010  QQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVP  1069
             Q L R AE+RAS  LA  K++ECV  QS R  FCG G HL S   +AP+G++F H   +P
Sbjct  941   QTLTRQAEVRASRQLAKDKVNECVKSQSHRFGFCGNGTHLFSLANAAPNGMIFFHTVLLP  1000

Query  1070  AQEKNFTTAPAICH-DGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFV  1122
                +  T    IC  DG   F       +  +F +   ++++T R  Y+P++ T+ +   
Sbjct  1001  TAYETVTAWSGICALDGDRTFGLVVKDVQLTLFRNLDDNFYLTPRTMYQPRVATSSDFVQ  1060

Query  1123  SGNCDVVIGIVNNTVYD--PLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGINASV  1176
                CDV+   VN TV D   + P+      + ++ L+ +  N T P++ + D+   NA+ 
Sbjct  1061  IEGCDVL--FVNTTVSDLPSIIPDYIDINQTVQDILENFRPNWTVPELTM-DV--FNATY  1115

Query  1177  VNIQKEIDRLN-----------EVA---KNLNESLIDLQELGKYEQYIKWPWYIWLGFIA  1222
             +N+  EID L            E+A    N+N +L++L+ L + E Y+KWPWY+WL  + 
Sbjct  1116  LNLTGEIDDLEFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LI  1173

Query  1223  GLIAIVMVTIML  1234
             GL+ I  + ++L
Sbjct  1174  GLVVIFCIPLLL  1185


>sp|P11223|SPIKE_IBVB Spike glycoprotein OS=Avian infectious bronchitis 
virus (strain Beaudette) OX=11122 GN=S PE=1 SV=1
Length=1162

 Score = 341 bits (875),  Expect = 2e-97, Method: Compositional matrix adjust.
 Identities = 195/543 (36%), Positives = 293/543 (54%), Gaps = 22/543 (4%)

Query  711   SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGI  770
             ++ IP +F ++VT E +   M K  ++C  Y+CG S +C  L  QYG  C  +   +  +
Sbjct  583   NVLIPNSFNLTVTDEYIQTRMDKVQINCLQYVCGSSLDCRKLFQQYGPVCDNILSVVNSV  642

Query  771   AVEQDKNTQEVFAQVKQI-YKTPPIKDF--GGFNFSQILPDPSKPSKRSFIEDLLFNKVT  827
               ++D      ++  K   + TP + +   G FN S +L +PS   KRS IEDLLF  V 
Sbjct  643   GQKEDMELLNFYSSTKPAGFNTPVLSNVSTGEFNISLLLTNPSSRRKRSLIEDLLFTSVE  702

Query  828   LADAGFIKQYGDCLGDIAA--RDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSG  885
                      Y +C        +DL CA+++NGL VLPP++T EM A YTS+L+A     G
Sbjct  703   SVGLPTNDAYKNCTAGPLGFFKDLACAREYNGLLVLPPIITAEMQALYTSSLVASMAFGG  762

Query  886   WTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASAL  945
              T    AA  IPFA Q+  R N +G+TQ++L +NQ+ IA  FN AIG +Q+   ST+ AL
Sbjct  763   IT----AAGAIPFATQLQARINHLGITQSLLLKNQEKIAASFNKAIGHMQEGFRSTSLAL  818

Query  946   GKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQ  1005
              ++QDVV++ +  L   +  L+ NFGAISSV+ +I  + D ++A  Q+DRLITGRL SL 
Sbjct  819   QQIQDVVSKQSAILTETMASLNKNFGAISSVIQEIYQQFDAIQANAQVDRLITGRLSSLS  878

Query  1006  TYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHV  1065
                + +      +     LA  K++ECV  QS R  FCG G H+++ PQ+AP+G+VF+H 
Sbjct  879   VLASAKQAEYIRVSQQRELATQKINECVKSQSIRYSFCGNGRHVLTIPQNAPNGIVFIHF  938

Query  1066  TYVPAQEKNFTTAPAIC-----HDGKAHFPR--EGVFVSNGTHWFVTQRNFYEPQIITTD  1118
             +Y P    N T     C         A  P    G+F+     +++T R+ Y P+ IT  
Sbjct  939   SYTPDSFVNVTAIVGFCVKPANASQYAIVPANGRGIFIQVNGSYYITARDMYMPRAITAG  998

Query  1119  NTFVSGNCDVVIGIVNNTVYDP-LQPELDSFKEELDKYFKN--HTSPDVDLGDISGINAS  1175
             +     +C      VN TV    +  +   F +EL K++ +  H  PD D  + +     
Sbjct  999   DVVTLTSCQANYVSVNKTVITTFVDNDDFDFNDELSKWWNDTKHELPDFDKFNYT---VP  1055

Query  1176  VVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLC  1235
             +++I  EIDR+  V + LN+SLIDL++L   + YIKWPWY+WL      I  +++   + 
Sbjct  1056  ILDIDSEIDRIQGVIQGLNDSLIDLEKLSILKTYIKWPWYVWLAIAFATIIFILILGWVF  1115

Query  1236  CMT  1238
              MT
Sbjct  1116  FMT  1118


>sp|P24413|SPIKE_CVPRM Spike glycoprotein OS=Porcine respiratory 
coronavirus (strain RM4) OX=11148 GN=S PE=1 SV=1
Length=1225

 Score = 338 bits (868),  Expect = 4e-96, Method: Compositional matrix adjust.
 Identities = 254/792 (32%), Positives = 387/792 (49%), Gaps = 119/792 (15%)

Query  516   ELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLP---FQQFGRDI---  569
              ++  P+   G    + L  + C ++N  G TG G++ ++N+  L    +     D+   
Sbjct  440   SIVGVPSDNSGLHDLSVLHLDSCTDYNIYGRTGVGIIRQTNRTILSGLYYTSLSGDLLGF  499

Query  570   ADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQL  629
              + +D V       I  +TPC     + I  GT      ++  + +  T           
Sbjct  500   TNVSDGV-------IYSVTPCDVSAQAAIIDGTIVGAITSINSELLGLTHWTT-------  545

Query  630   TPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARS  686
             TP +  YS  +       G  IG+    N  +C+  I     G+C +             
Sbjct  546   TPNFYYYSIYNYTNDKTRGTPIGS----NDVDCEPVITYSNIGVCKN-------------  588

Query  687   VASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDS  746
               +   I  T S G    ++  N  + IPTNFTISV  E + V  T  S+DC+ Y+C  +
Sbjct  589   -GALVFINVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGN  645

Query  747   TECSNLLLQYGSFCTQLNRALT-GIAVEQDKNTQEVFAQ-----------------VKQI  788
               C+ LL QY S C  + +AL  G  +E  +    +F                   +  I
Sbjct  646   PRCNKLLTQYVSACQTIEQALAMGARLENMEVDSMLFVSENALKLASVEAFNSSETLDPI  705

Query  789   YKTPPIKDFGGF---NFSQILP-DPSKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGD  843
             YK  P  + GGF       ILP D SK   RS IEDLLF+KV  +  G + + Y  C G 
Sbjct  706   YKEWP--NIGGFWLEGLKYILPSDNSKRKYRSAIEDLLFSKVVTSGLGTVDEDYKRCTGG  763

Query  844   IAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMA  903
                 DL+CAQ +NG+ VLP +   + +  YT++L AG IT G     G A+ IPFA+ + 
Sbjct  764   YDIADLVCAQYYNGIMVLPGVANADKMTMYTASL-AGGITLGAL--GGGAVAIPFAVAVQ  820

Query  904   YRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDS--------------LSSTASALGKLQ  949
              R N + +  +VL +NQ+++A+ FN AIG I  S              L++ A AL K+Q
Sbjct  821   ARLNYVALQTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHQTSRGLTTVAKALAKVQ  880

Query  950   DVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVT  1009
             DVVN   QAL  L  QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L  +V+
Sbjct  881   DVVNTQGQALRHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVS  940

Query  1010  QQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVP  1069
             Q L R AE+RAS  LA  K++ECV  QS+R  FCG G HL S   +AP+G++F H   +P
Sbjct  941   QTLTRQAEVRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLP  1000

Query  1070  AQEKNFTTAPAICH-DGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFV  1122
                +  T    IC  D    F       +  +F +    +++T R  Y+P++ T+ +   
Sbjct  1001  TAYETVTAWSGICALDVDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQ  1060

Query  1123  SGNCDVVIGIVNNTVYD--PLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGINASV  1176
                CDV+   VN TV D   + P+      + ++ L+ +  N T P++ L D+   NA+ 
Sbjct  1061  IEGCDVL--FVNTTVSDLPSIIPDYIDINQTVQDILENFRPNWTVPELTL-DV--FNATY  1115

Query  1177  VNIQKEIDRLN-----------EVA---KNLNESLIDLQELGKYEQYIKWPWYIWLGFIA  1222
             +N+  EID L            E+A    N+N ++++L+ L + E Y+KWPWY+WL  + 
Sbjct  1116  LNLTGEIDDLEFRSEKLHNTTVELAILIDNINNTVVNLEWLNRIETYVKWPWYVWL--LI  1173

Query  1223  GLIAIVMVTIML  1234
             GL+ I  + ++L
Sbjct  1174  GLVVIFCIPLLL  1185


>sp|Q65984|SPIKE_CVCAK Spike glycoprotein OS=Canine coronavirus 
(strain K378) OX=33732 GN=S PE=1 SV=1
Length=1453

 Score = 339 bits (870),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 255/792 (32%), Positives = 389/792 (49%), Gaps = 121/792 (15%)

Query  517   LLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLP---FQQFGRDI---A  570
             ++  P+   G    + L  + C ++N  G+TG G++ ++N   L    +     D+    
Sbjct  669   IVGVPSDNSGLHDLSVLHLDSCTDYNIYGITGVGIIRQTNSTLLSGLYYTSLSGDLLGFK  728

Query  571   DTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLT  630
             + +D V       I  +TPC     + +  G       ++  + +  T           T
Sbjct  729   NVSDGV-------IYSVTPCDVSAHAAVIDGAIVGAMTSINSELLGLTHWTT-------T  774

Query  631   PTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPI----GAGICASYQTQTNSPRRARS  686
             P +  YS  +   +   G  I +    N  +C+ PI      G+C +             
Sbjct  775   PNFYYYSIYNYTNERTRGTAIDS----NDVDCE-PIITYSNIGVCKN-------------  816

Query  687   VASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDS  746
               +   I  T S G    ++  N  + IPTNFTISV  E + V  T  S+DC+ Y+C  +
Sbjct  817   -GALVFINVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGN  873

Query  747   TECSNLLLQYGSFCTQLNRALT-GIAVEQDKNTQEVFAQ-----------------VKQI  788
               C+ LL QY S C  + +AL  G  +E  +    +F                   +  I
Sbjct  874   PRCNKLLTQYVSACQTIEQALAMGARLENMEIDSMLFVSENALKLASVEAFNSTETLDPI  933

Query  789   YKTPPIKDFGGF---NFSQILPDP-SKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGD  843
             YK  P  + GG        ILP   SK   RS IEDLLF+KV  +  G + + Y  C G 
Sbjct  934   YKEWP--NIGGSWLGGLKDILPSHNSKRKYRSAIEDLLFDKVVTSGLGTVDEDYKRCTGG  991

Query  844   IAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMA  903
                 DL+CAQ +NG+ VLP +  D+ +A YT++L AG IT G + G GA + IPFA+ + 
Sbjct  992   YDIADLVCAQYYNGIMVLPGVANDDKMAMYTASL-AGGITLG-SLGGGA-VSIPFAIAVQ  1048

Query  904   YRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDS--------------LSSTASALGKLQ  949
              R N + +  +VL +NQ+++AN FN AIG I  +              L++ A  L K+Q
Sbjct  1049  ARLNYVALQTDVLNKNQQILANAFNQAIGNITQAFGKVNDAIHQTSQGLATVAKVLAKVQ  1108

Query  950   DVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVT  1009
             DVVN   QAL+ L  QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L  +V+
Sbjct  1109  DVVNTQGQALSHLTLQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVS  1168

Query  1010  QQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVP  1069
             Q L R AE+RAS  LA  K++ECV  QS+R  FCG G HL S   +AP+G++F H   +P
Sbjct  1169  QTLTRQAEVRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLP  1228

Query  1070  AQEKNFTTAPAIC-HDGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFV  1122
                +  T    IC  DG   F       +  +F +    +++T R  Y+P + T+ +   
Sbjct  1229  TAYETVTAWSGICASDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPIVATSSDFVQ  1288

Query  1123  SGNCDVVIGIVNNTVYD--PLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGINASV  1176
                CDV+   VN TV D   + P+      + ++ L+ +  N T P++ L DI   NA+ 
Sbjct  1289  IEGCDVL--FVNATVIDLPSIIPDYIDINQTVQDILENFRPNWTVPELPL-DI--FNATY  1343

Query  1177  VNIQKEIDRLN-----------EVA---KNLNESLIDLQELGKYEQYIKWPWYIWLGFIA  1222
             +N+  EI+ L            E+A    N+N +L++L+ L + E Y+KWPWY+WL  + 
Sbjct  1344  LNLTGEINDLEFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LI  1401

Query  1223  GLIAIVMVTIML  1234
             GL+ I  + I+L
Sbjct  1402  GLVVIFCIPILL  1413


>sp|Q0Q466|SPIKE_BC512 Spike glycoprotein OS=Bat coronavirus 512/2005 
OX=693999 GN=S PE=3 SV=1
Length=1371

 Score = 337 bits (865),  Expect = 4e-95, Method: Compositional matrix adjust.
 Identities = 202/558 (36%), Positives = 302/558 (54%), Gaps = 43/558 (8%)

Query  711   SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGI  770
             +I+IPTNFT+SV TE + +     SVDC MY+C  +  C  LL QY S C  +  AL   
Sbjct  781   NISIPTNFTMSVRTEYIQLFNKPVSVDCAMYVCNGNDRCKQLLSQYTSACKNIESALQLS  840

Query  771   AVEQDKNTQEVFAQVKQIYKTPPIKDF--GGFNFSQILPDPSKPSKRSFIEDLLFNKVTL  828
             A  +      +     +  K   I  F  GG+NF+ ILP  + P  RS IED+LF+KV  
Sbjct  841   ARLESMEVNSMLTVSDEALKLATISQFPGGGYNFTNILP--ANPGARSVIEDILFDKVVT  898

Query  829   ADAGFIKQ-YGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWT  887
             +  G + + Y  C   ++  DL CAQ +NG+ VLP +   E +  Y+++L+ G    G T
Sbjct  899   SGLGTVDEDYKRCSNGLSIADLACAQHYNGIMVLPGVADWEKVHMYSASLVGGMTLGGIT  958

Query  888   FGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKI-------------  934
                 +A  +PF+  +  R N + +  +VL  NQ+++AN FNSAI  I             
Sbjct  959   ----SAAALPFSYAVQARLNYVALQTDVLQRNQQMLANSFNSAISNITLAFESVNNAIYQ  1014

Query  935   -QDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQI  993
                 L++ A AL K+QDVVN    AL+ L  QL +NF AIS+ + DI SRLD++ A+ Q+
Sbjct  1015  TSAGLNTVAEALSKVQDVVNGQGNALSQLTVQLQNNFQAISNSIGDIYSRLDQITADAQV  1074

Query  994   DRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCG-KGYHLMSF  1052
             DRLITGRL +L  +V Q L + AE++AS  LA  K++ECV  QS R  FCG +G H+ S 
Sbjct  1075  DRLITGRLAALNAFVAQSLTKYAEVQASRTLAKQKVNECVKSQSPRYGFCGDEGEHIFSL  1134

Query  1053  PQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGK-AHFPREG---VFVSNGTHWFVTQRN  1108
              Q+AP G++FLH   VP    N T    +C D   A   R+    +FV NG ++ V+ R 
Sbjct  1135  TQAAPQGLMFLHTVLVPNGFINVTAVTGLCVDETIAMTLRQSGFVLFVQNG-NYLVSPRK  1193

Query  1109  FYEPQIITTDNTFVSGNCDV-VIGIVNNTVYDPLQPELDSFK--EELDKYFKNHTSPDVD  1165
              +EP+     +      C +  + I NN + D +   +D  K  +E+     N+T PD+ 
Sbjct  1194  MFEPRRPEVADFVQVKTCTISYVNITNNQLPDIIPDYVDVNKTIDEILANLPNNTVPDLP  1253

Query  1166  L-----------GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPW  1214
             L           G+I+ + A   +++   + L ++ +N+N +L+DLQ L + E +IKWPW
Sbjct  1254  LDVFNQTFLNLTGEIADLEARSESLKNTSEELRQLIQNINNTLVDLQWLNRVETFIKWPW  1313

Query  1215  YIWLGFIAGLIAIVMVTI  1232
             Y+WL  +  LI +V + +
Sbjct  1314  YVWLAIVIALILVVSLLV  1331


>sp|P10033|SPIKE_FIPV Spike glycoprotein OS=Feline coronavirus 
(strain FIPV WSU-79/1146) OX=33734 GN=S PE=1 SV=1
Length=1452

 Score = 337 bits (865),  Expect = 9e-95, Method: Compositional matrix adjust.
 Identities = 254/795 (32%), Positives = 389/795 (49%), Gaps = 116/795 (15%)

Query  517   LLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLP---FQQFGRDI---A  570
             ++  P+   G    + L  + C ++N  G TG G++  +N   L    +     D+    
Sbjct  668   IVGVPSDNSGLHDLSVLHLDSCTDYNIYGRTGVGIIRRTNSTLLSGLYYTSLSGDLLGFK  727

Query  571   DTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLT  630
             + +D V       I  +TPC     + +  G       ++  + +  T           T
Sbjct  728   NVSDGV-------IYSVTPCDVSAQAAVIDGAIVGAMTSINSELLGLTHWTT-------T  773

Query  631   PTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARSV  687
             P +  YS  +   +   G  I +    N  +C+  I     G+C +              
Sbjct  774   PNFYYYSIYNYTSERTRGTAIDS----NDVDCEPVITYSNIGVCKN--------------  815

Query  688   ASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDST  747
              +   I  T S G    ++  N  + IPTNFTISV  E + V  T  S+DC  Y+C  + 
Sbjct  816   GALVFINVTHSDGDVQPISTGN--VTIPTNFTISVQVEYMQVYTTPVSIDCARYVCNGNP  873

Query  748   ECSNLLLQYGSFCTQLNRALT-GIAVEQDKNTQEVF--------AQVKQIYKT----PPI  794
              C+ LL QY S C  + +AL  G  +E  +    +F        A V+    T    P  
Sbjct  874   RCNKLLTQYVSACQTIEQALAMGARLENMEVDSMLFVSENALKLASVEAFNSTENLDPIY  933

Query  795   KDFGGFNFSQI--LPD--PSKPSKRSF---IEDLLFNKVTLADAGFIKQ-YGDCLGDIAA  846
             K++     S +  L D  PS  SKR +   IEDLLF+KV  +  G + + Y  C G    
Sbjct  934   KEWPSIGGSWLGGLKDILPSHNSKRKYGSAIEDLLFDKVVTSGLGTVDEDYKRCTGGYDI  993

Query  847   RDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRF  906
              DL+CAQ +NG+ VLP +   + +  YT++L AG IT G     G A+ IPFA+ +  R 
Sbjct  994   ADLVCAQYYNGIMVLPGVANADKMTMYTASL-AGGITLGAL--GGGAVAIPFAVAVQARL  1050

Query  907   NGIGVTQNVLYENQKLIANQFNSAIGKIQDS--------------LSSTASALGKLQDVV  952
             N + +  +VL +NQ+++AN FN AIG I  +              L++ A AL K+QDVV
Sbjct  1051  NYVALQTDVLNKNQQILANAFNQAIGNITQAFGKVNDAIHQTSQGLATVAKALAKVQDVV  1110

Query  953   NQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQL  1012
             N   QAL+ L  QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L  +V+Q L
Sbjct  1111  NTQGQALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQTL  1170

Query  1013  IRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQE  1072
              R AE+RAS  LA  K++ECV  QS+R  FCG G HL S   +AP+G++F H   +P   
Sbjct  1171  TRQAEVRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPTAY  1230

Query  1073  KNFTTAPAIC-HDGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGN  1125
             +  T    IC  DG   F       +  +F +    +++T R  Y+P++ T+ +      
Sbjct  1231  ETVTAWSGICASDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQIEG  1290

Query  1126  CDVVIGIVNNTVYD--PLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGINASVVNI  1179
             CDV+   VN TV D   + P+      + ++ L+ Y  N T P+  L DI   NA+ +N+
Sbjct  1291  CDVL--FVNATVIDLPSIIPDYIDINQTVQDILENYRPNWTVPEFTL-DI--FNATYLNL  1345

Query  1180  QKEIDRLN-----------EVA---KNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI  1225
               EID L            E+A    N+N +L++L+ L + E Y+KWPWY+WL  + GL+
Sbjct  1346  TGEIDDLEFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIGLV  1403

Query  1226  AIVMVTIML-CCMTS  1239
              +  + ++L CC ++
Sbjct  1404  VVFCIPLLLFCCFST  1418


>sp|P07946|SPIKE_CVPPU Spike glycoprotein OS=Porcine transmissible 
gastroenteritis coronavirus (strain Purdue) OX=11151 GN=S 
PE=1 SV=2
Length=1447

 Score = 337 bits (864),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 253/791 (32%), Positives = 386/791 (49%), Gaps = 119/791 (15%)

Query  517   LLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLP---FQQFGRDI---A  570
             ++  P+   G    + L  + C ++N  G TG G++ ++N+  L    +     D+    
Sbjct  663   IVGVPSDNSGVHDLSVLHLDSCTDYNIYGRTGVGIIRQTNRTLLSGLYYTSLSGDLLGFK  722

Query  571   DTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLT  630
             + +D V       I  +TPC     + +  GT      ++  + +  T           T
Sbjct  723   NVSDGV-------IYSVTPCDVSAQAAVIDGTIVGAITSINSELLGLTHWTT-------T  768

Query  631   PTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARSV  687
             P +  YS  +       G  I +    N  +C+  I     G+C +              
Sbjct  769   PNFYYYSIYNYTNDRTRGTAIDS----NDVDCEPVITYSNIGVCKN--------------  810

Query  688   ASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDST  747
              +   I  T S G    ++  N  + IPTNFTISV  E + V  T  S+DC+ Y+C  + 
Sbjct  811   GAFVFINVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNP  868

Query  748   ECSNLLLQYGSFCTQLNRALT-GIAVEQDKNTQEVFAQ-----------------VKQIY  789
              C+ LL QY S C  + +AL  G  +E  +    +F                   +  IY
Sbjct  869   RCNKLLTQYVSACQTIEQALAMGARLENMEVDSMLFVSENALKLASVEAFNSSETLDPIY  928

Query  790   KTPPIKDFGGF---NFSQILPDP-SKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDI  844
             K  P  + GG        ILP   SK   RS IEDLLF+KV  +  G + + Y  C G  
Sbjct  929   KEWP--NIGGSWLEGLKYILPSHNSKRKYRSAIEDLLFDKVVTSGLGTVDEDYKRCTGGY  986

Query  845   AARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAY  904
                DL+CAQ +NG+ VLP +   + +  YT++ LAG IT G     G A+ IPFA+ +  
Sbjct  987   DIADLVCAQYYNGIMVLPGVANADKMTMYTAS-LAGGITLGAL--GGGAVAIPFAVAVQA  1043

Query  905   RFNGIGVTQNVLYENQKLIANQFNSAIGKIQDS--------------LSSTASALGKLQD  950
             R N + +  +VL +NQ+++A+ FN AIG I  S              L++ A AL K+QD
Sbjct  1044  RLNYVALQTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHQTSRGLATVAKALAKVQD  1103

Query  951   VVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQ  1010
             VVN   QAL+ L  QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L  +V+Q
Sbjct  1104  VVNIQGQALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQ  1163

Query  1011  QLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPA  1070
              L R AE+RAS  LA  K++ECV  QS+R  FCG G HL S   +AP+G++F H   +P 
Sbjct  1164  TLTRQAEVRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPT  1223

Query  1071  QEKNFTTAPAIC-HDGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVS  1123
               +  T  P IC  DG   F       +  +F +    +++T R  Y+P++ T+ +    
Sbjct  1224  AYETVTAWPGICASDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQI  1283

Query  1124  GNCDVVIGIVNNTVYD--PLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGINASVV  1177
               CDV+   VN TV D   + P+      + ++ L+ +  N T P++   DI   NA+ +
Sbjct  1284  EGCDVL--FVNATVSDLPSIIPDYIDINQTVQDILENFRPNWTVPELTF-DI--FNATYL  1338

Query  1178  NIQKEIDRLN-----------EVA---KNLNESLIDLQELGKYEQYIKWPWYIWLGFIAG  1223
             N+  EID L            E+A    N+N +L++L+ L + E Y+KWPWY+WL  + G
Sbjct  1339  NLTGEIDDLEFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIG  1396

Query  1224  LIAIVMVTIML  1234
             L+ I  + ++L
Sbjct  1397  LVVIFCIPLLL  1407


>sp|Q7T6T3|SPIKE_CVCBG Spike glycoprotein OS=Canine coronavirus 
(strain BGF10) OX=441619 GN=S PE=3 SV=1
Length=1453

 Score = 337 bits (863),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 257/824 (31%), Positives = 399/824 (48%), Gaps = 122/824 (15%)

Query  485   GFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFN  544
             G NC F + +       GVG   Y +      ++  P+   G    + L  + C ++N  
Sbjct  638   GANCKFDVVARTRTNEQGVG-SLYVIYEEGDNIVGVPSDNSGLHDLSVLHLDSCTDYNIY  696

Query  545   GLTGTGVLTESNKKFLP---FQQFGRDI---ADTTDAVRDPQTLEILDITPCSFGGVSVI  598
             G  G G++ ++N   L    +     D+    + +D V       +  +TPC     + +
Sbjct  697   GRNGVGIIRKTNSTLLSGLYYTSLSGDLLGFKNVSDGV-------VYSVTPCEVSAQAAV  749

Query  599   TPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNN  658
               G       ++  + +  T           TP +  YS  +   +   G +  +    N
Sbjct  750   IDGAIVGAMTSINSELLGLTHWTT-------TPNFYYYSIYNYTNERVRGTVTDS----N  798

Query  659   SYECDIPI----GAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAI  714
               +C+ PI      G+C +               +   I  T S G    ++  N  + I
Sbjct  799   DVDCE-PIITYSNIGVCKN--------------GALVFINVTHSDGDVQPISTGN--VTI  841

Query  715   PTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALT-GIAVE  773
             PTNFTISV  E + V  T  S+DC+ Y+C  ++ C+ LL QY S C  + +AL  G  +E
Sbjct  842   PTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNSRCNKLLTQYVSACHTIEQALAMGARLE  901

Query  774   QDKNTQEVFA-----------------QVKQIYKTPPIKDFGGF---NFSQILPDP-SKP  812
               +    +F                   +  IY+  P  + GG        ILP   SK 
Sbjct  902   NMEIDSMLFVSENALKLASVEAFNSTDNLDPIYREWP--NIGGSWLGGLKDILPSHNSKR  959

Query  813   SKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA  871
               RS IEDLLF+KV  +  G + + Y  C G     DL+CAQ +NG+ VLP +  D+ +A
Sbjct  960   KYRSAIEDLLFDKVVTSGLGTVDEDYKRCTGGYDIADLVCAQYYNGIMVLPGVANDDKMA  1019

Query  872   QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAI  931
              YT++L AG IT G     G A+ IPFA+ +  R N + +  +VL +NQ+++AN FN AI
Sbjct  1020  MYTASL-AGGITLGAL--GGGAVSIPFAVAVQARLNYVALQTDVLNKNQQILANAFNQAI  1076

Query  932   GKIQDS--------------LSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVL  977
             G I  +              L++ A AL K+QDVVN   QAL+ L  QL +NF AISS +
Sbjct  1077  GNITQAFGNVNDAIHQTSKGLATVAKALAKVQDVVNTQGQALSHLTVQLQNNFQAISSSI  1136

Query  978   NDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQS  1037
             +DI +RLD++ A+ Q+DRLITGRL +L  +V+Q L R AE+RAS  LA  K++ECV  QS
Sbjct  1137  SDIYNRLDELSADAQVDRLITGRLTALNAFVSQTLTRQAEVRASRQLAKDKVNECVRSQS  1196

Query  1038  KRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAIC-HDGKAHFP------  1090
             +R  FCG G HL S   +AP+G++F H   +P   +  T    IC  DG   F       
Sbjct  1197  QRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPTAYETVTAWSGICASDGNRTFGLVVKDV  1256

Query  1091  REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYD--PLQPEL---  1145
             +  +F +    +++T R  Y+P++ T+ +      CDV+   VN TV +   + P+    
Sbjct  1257  QLTLFRNLDYKFYLTPRTMYQPRVATSSDFVQIEGCDVL--FVNATVIELPSIIPDYIDI  1314

Query  1146  -DSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLN-----------EVA---  1190
               + ++ L+ +  N T P++ L DI   NA+ +N+  EI+ L            E+A   
Sbjct  1315  NQTVQDILENFRPNWTVPELPL-DI--FNATYLNLTGEINDLEFRSEKLHNTTLELATLI  1371

Query  1191  KNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIML  1234
              N+N +L++L+ L + E Y+KWPWY+WL  + GL+ I  + ++L
Sbjct  1372  DNINNTLVNLEWLNRIETYVKWPWYVWL--LIGLVVIFCIPLLL  1413


>sp|P33470|SPIKE_CVPMI Spike glycoprotein OS=Porcine transmissible 
gastroenteritis coronavirus (strain Miller) OX=33737 GN=S 
PE=3 SV=2
Length=1449

 Score = 335 bits (859),  Expect = 5e-94, Method: Compositional matrix adjust.
 Identities = 253/791 (32%), Positives = 385/791 (49%), Gaps = 119/791 (15%)

Query  517   LLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLP---FQQFGRDI---A  570
             ++  P+   G    + L  + C ++N  G TG G++ ++N+  L    +     D+    
Sbjct  665   IVGVPSDNSGLHDLSVLHLDSCTDYNIYGRTGVGIIRQTNRTLLSGLYYTSLSGDLLGFK  724

Query  571   DTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLT  630
             + +D V       I  +TPC     + +  GT      ++  + +  T           T
Sbjct  725   NVSDGV-------IYSVTPCDVSAQAAVIDGTIVGAITSINSELLGLTHWTT-------T  770

Query  631   PTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARSV  687
             P +  YS  +       G  I +    N  +C+  I     G+C +              
Sbjct  771   PNFYYYSIYNYTNDRTRGTAIDS----NDVDCEPVITYSNIGVCKN--------------  812

Query  688   ASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDST  747
              +   I  T S G    ++  N  + IPTNFTISV  E + V  T  S+DC+ Y+C  + 
Sbjct  813   GALVFINVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNP  870

Query  748   ECSNLLLQYGSFCTQLNRALT-GIAVEQDKNTQEVFAQ-----------------VKQIY  789
              C+ LL QY S C  + +AL  G  +E  +    +F                   +  IY
Sbjct  871   RCNKLLTQYVSACQTIEQALAMGARLENMEVGSMLFVSENALKLASVEAFNSSETLDPIY  930

Query  790   KTPPIKDFGGF---NFSQILP-DPSKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDI  844
             K  P  + GG        ILP D SK   RS IEDLLF KV  +  G + + Y  C G  
Sbjct  931   KEWP--NIGGSWLEGLKYILPSDNSKRKYRSAIEDLLFAKVVTSGLGTVDEDYKRCTGGY  988

Query  845   AARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAY  904
                DL+CAQ +NG+ VLP +   + +  YT++L AG IT G     G A+ IPFA+ +  
Sbjct  989   DIADLVCAQYYNGIMVLPGVANADKMTMYTASL-AGGITLGAL--GGGAVAIPFAVAVQA  1045

Query  905   RFNGIGVTQNVLYENQKLIANQFNSAIGKIQDS--------------LSSTASALGKLQD  950
             R N + +  +VL +NQ+++A+ FN AIG I  S              L++ A AL K+QD
Sbjct  1046  RLNYVALQTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHQTSRGLATVAKALAKVQD  1105

Query  951   VVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQ  1010
             VVN   QAL+ L  QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L  +V+Q
Sbjct  1106  VVNTQGQALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQ  1165

Query  1011  QLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPA  1070
              L R AE+RAS  LA  K++ECV  QS+R  FCG G HL S   +AP+G++F H   +P 
Sbjct  1166  TLTRQAEVRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPT  1225

Query  1071  QEKNFTTAPAICH-DGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVS  1123
               +  T    IC  DG   F       +  +F +    +++T R  Y+P++ T+ +    
Sbjct  1226  AYETVTAWAGICALDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQI  1285

Query  1124  GNCDVVIGIVNNTVYD--PLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGINASVV  1177
               CDV+   VN TV D   + P+      + ++ L+ +  N T P++   DI   NA+ +
Sbjct  1286  EGCDVL--FVNATVSDLPSIIPDYIDINQTVQDILENFRPNWTVPELTF-DI--FNATYL  1340

Query  1178  NIQKEIDRLN-----------EVA---KNLNESLIDLQELGKYEQYIKWPWYIWLGFIAG  1223
             N+  EID L            E+A    N+N +L++L+ L + E Y+KWPWY+WL  + G
Sbjct  1341  NLTGEIDDLEFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIG  1398

Query  1224  LIAIVMVTIML  1234
             L+ I  + ++L
Sbjct  1399  LVVIFCIPLLL  1409


>sp|Q01977|SPIKE_CVPRT Spike glycoprotein OS=Porcine transmissible 
gastroenteritis coronavirus (strain NEB72-rt) OX=33738 
GN=S PE=3 SV=1
Length=1447

 Score = 334 bits (856),  Expect = 1e-93, Method: Compositional matrix adjust.
 Identities = 252/791 (32%), Positives = 385/791 (49%), Gaps = 119/791 (15%)

Query  517   LLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLP---FQQFGRDI---A  570
             ++  P+   G    + L  + C ++N  G TG G++ ++N+  L    +     D+    
Sbjct  663   IVGVPSDNSGVHDLSVLHLDSCTDYNIYGRTGVGIIRKTNRTLLSGLYYTSLSGDLLGFK  722

Query  571   DTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLT  630
             + +D V       I  +TPC     + +  GT      ++  + +  T           T
Sbjct  723   NVSDGV-------IYSVTPCDVSAQAAVIDGTIVGAITSINSELLGLTHWTT-------T  768

Query  631   PTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARSV  687
             P +  YS  +       G  I +    N  +C+  I     G+C +              
Sbjct  769   PNFYYYSIYNYTNDRTRGTAIDS----NDVDCEPVITYSNIGVCKN--------------  810

Query  688   ASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDST  747
              +   I  T S G    ++  N  + IPTNFTISV  E + V  T  S+DC+ Y+C  + 
Sbjct  811   GAFVFINVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNP  868

Query  748   ECSNLLLQYGSFCTQLNRALT-GIAVEQDKNTQEVFAQ-----------------VKQIY  789
              C+ LL QY S C  + +AL  G  +E  +    +F                   +  IY
Sbjct  869   RCNKLLTQYVSACQTIEQALAMGARLENMEVDSMLFVSENALKLASVEAFNSSETLDPIY  928

Query  790   KTPPIKDFGGF---NFSQILPDP-SKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDI  844
             K  P  + GG        ILP   SK   RS IEDLLF+KV  +  G + + Y  C G  
Sbjct  929   KEWP--NIGGSWLEGLKYILPSHNSKRKYRSAIEDLLFDKVVTSGLGTVDEDYKRCTGGY  986

Query  845   AARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAY  904
                DL+CAQ +NG+ VLP +   + +  YT++ LAG IT G     G A+ IPFA+ +  
Sbjct  987   DIADLVCAQYYNGIMVLPGVANADKMTMYTAS-LAGGITLGAL--GGGAVAIPFAVAVQA  1043

Query  905   RFNGIGVTQNVLYENQKLIANQFNSAIGKIQDS--------------LSSTASALGKLQD  950
             R N + +  +VL +NQ+++A+ FN AIG I  S              L++ A AL K+QD
Sbjct  1044  RLNYVALQTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHXTSRGLATVAKALAKVQD  1103

Query  951   VVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQ  1010
             VV    QAL+ L  QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L  +V+Q
Sbjct  1104  VVXIQGQALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQ  1163

Query  1011  QLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPA  1070
              L R AE+RAS  LA  K++ECV  QS+R  FCG G HL S   +AP+G++F H   +P 
Sbjct  1164  TLTRQAEVRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPT  1223

Query  1071  QEKNFTTAPAIC-HDGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVS  1123
               +  T  P IC  DG   F       +  +F +    +++T R  Y+P++ T+ +    
Sbjct  1224  AYETVTAWPGICASDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQI  1283

Query  1124  GNCDVVIGIVNNTVYD--PLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGINASVV  1177
               CDV+   VN TV D   + P+      + ++ L+ +  N T P++   DI   NA+ +
Sbjct  1284  EGCDVL--FVNATVSDLPSIIPDYIDINQTVQDILENFRPNWTVPELTF-DI--FNATYL  1338

Query  1178  NIQKEIDRLN-----------EVA---KNLNESLIDLQELGKYEQYIKWPWYIWLGFIAG  1223
             N+  EID L            E+A    N+N +L++L+ L + E Y+KWPWY+WL  + G
Sbjct  1339  NLTGEIDDLEFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIG  1396

Query  1224  LIAIVMVTIML  1234
             L+ I  + ++L
Sbjct  1397  LVVIFCIPLLL  1407


>sp|P18450|SPIKE_CVPFS Spike glycoprotein OS=Porcine transmissible 
gastroenteritis coronavirus (strain FS772/70) OX=11150 
GN=S PE=3 SV=2
Length=1449

 Score = 332 bits (851),  Expect = 5e-93, Method: Compositional matrix adjust.
 Identities = 250/791 (32%), Positives = 385/791 (49%), Gaps = 119/791 (15%)

Query  517   LLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLP---FQQFGRDI---A  570
             ++  P+   G    + L  + C ++N  G +G G++ ++N+  L    +     D+    
Sbjct  665   IVGVPSDNSGLHDLSVLHLDSCTDYNIYGRSGVGIIRQTNRTLLSGLYYTSLSGDLLGFK  724

Query  571   DTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLT  630
             + +D V       I  +TPC     + +  GT      ++  + +  T           T
Sbjct  725   NVSDGV-------IYSVTPCDVSAQAAVIDGTIVGAITSINSELLGLTHWTT-------T  770

Query  631   PTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARSV  687
             P +  YS  +       G  I +    N  +C+  I     G+C +              
Sbjct  771   PNFYYYSIYNYTNDMTRGTAIDS----NDVDCEPVITYSNIGVCKN--------------  812

Query  688   ASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDST  747
              +   I  T S G    ++  N  + IPTNFTISV  E + V  T  S+DC+ Y+C  + 
Sbjct  813   GALVFINVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNP  870

Query  748   ECSNLLLQYGSFCTQLNRAL-TGIAVEQDKNTQEVFAQ-----------------VKQIY  789
              C+ LL QY S C  + +AL  G  +E  +    +F                   +  IY
Sbjct  871   RCNKLLTQYVSACQTIEQALAVGARLENMEVDSMLFVSENALKLASVEAFNSSETLDPIY  930

Query  790   KTPPIKDFGGF---NFSQILP-DPSKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDI  844
             K  P  + GG        ILP D SK   RS IEDLLF+KV  +  G + + Y  C G  
Sbjct  931   KEWP--NIGGSWLEGLKYILPSDNSKRKYRSAIEDLLFSKVVTSGLGTVDEDYKRCTGGY  988

Query  845   AARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAY  904
                DL+CAQ +NG+ VLP +   + +  YT++L AG IT G     G A+ IPFA+ +  
Sbjct  989   DIADLVCAQYYNGIMVLPGVANADKMTMYTASL-AGGITLGAL--GGGAVAIPFAVAVQA  1045

Query  905   RFNGIGVTQNVLYENQKLIANQFNSAIGKIQDS--------------LSSTASALGKLQD  950
             R N + +  +VL +NQ+++A+ FN AIG I  S              L++ A AL K+QD
Sbjct  1046  RLNYVALQTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHQTSRGLATVAKALAKVQD  1105

Query  951   VVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQ  1010
             VVN   QAL+ L  QL +NF AISS ++DI +RLD++ A+  +DRLITGRL +L  +V+Q
Sbjct  1106  VVNTQGQALSHLTVQLQNNFQAISSSISDIYNRLDELSADAHVDRLITGRLTALNAFVSQ  1165

Query  1011  QLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPA  1070
              L R AE+RAS  LA  K++ECV  QS+R  FCG G HL S   +AP+G++F H   +P 
Sbjct  1166  TLTRQAEVRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHAVLLPT  1225

Query  1071  QEKNFTTAPAICH-DGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVS  1123
               +  T    IC  DG   F       +  +F +    +++T R  Y+P++ T+ +    
Sbjct  1226  AYETVTAWAGICALDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQI  1285

Query  1124  GNCDVVIGIVNNTVYD--PLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGINASVV  1177
               CDV+   VN T+ D   + P+      + ++ L+ +  N T P++   DI   NA+ +
Sbjct  1286  EGCDVL--FVNATLSDLPSIIPDYIDINQTVQDILENFRPNWTVPELTF-DI--FNATYL  1340

Query  1178  NIQKEIDRLN-----------EVA---KNLNESLIDLQELGKYEQYIKWPWYIWLGFIAG  1223
             N+  EID L            E+A    N+N +L++L+ L + E Y+KWPWY+WL  + G
Sbjct  1341  NLTGEIDDLEFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIG  1398

Query  1224  LIAIVMVTIML  1234
             L+ I  + ++L
Sbjct  1399  LVVIFCIPLLL  1409


>sp|P36300|SPIKE_CVCAI Spike glycoprotein OS=Canine coronavirus 
(strain Insavc-1) OX=36391 GN=S PE=1 SV=1
Length=1451

 Score = 328 bits (841),  Expect = 1e-91, Method: Compositional matrix adjust.
 Identities = 249/794 (31%), Positives = 384/794 (48%), Gaps = 126/794 (16%)

Query  517   LLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLP---FQQFGRDI---A  570
             ++  P+   G    + L  + C ++N  G TG G++ ++N   L    +     D+    
Sbjct  668   IVGVPSDNSGLHDLSVLHLDSCTDYNIYGRTGVGIIRKTNSTLLSGLYYTSLSGDLLGFK  727

Query  571   DTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLT  630
             + +D V       +  +TPC     + +  G       ++  + +  T           T
Sbjct  728   NVSDGV-------VYSVTPCDVSAQAAVIDGAIVGAMTSINSELLGLTHWTT-------T  773

Query  631   PTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPI----GAGICASYQTQTNSPRRARS  686
             P +  YS  +       G  I     +N  +C+ PI      G+C +             
Sbjct  774   PNFYYYSIYNYTNVMNRGTAI-----DNDIDCE-PIITYSNIGVCKN-------------  814

Query  687   VASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDS  746
               +   I  T S G    ++  N  + IPTNFTISV  E + V  T  S+DC  Y+C  +
Sbjct  815   -GALVFINVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCARYVCNGN  871

Query  747   TECSNLLLQYGSFCTQLNRALT-GIAVEQDKNTQEVFA-----------------QVKQI  788
               C+ LL QY S C  + +AL  G  +E  +    +F                   +  I
Sbjct  872   PRCNKLLTQYVSACQTIEQALAMGARLENMEIDSMLFVSENALKLASVEAFNSTENLDPI  931

Query  789   YKTPPIKDFGGF---NFSQILPDP-SKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGD  843
             YK  P  + GG        ILP   SK   RS IEDLLF+KV  +  G + + Y    G 
Sbjct  932   YKEWP--NIGGSWLGGLKDILPSHNSKRKYRSAIEDLLFDKVVTSGLGTVDEDYKRSAGG  989

Query  844   IAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGA--GAALQIPFAMQ  901
                 DL+CA+ +NG+ VLP +  D+ +  YT++L     T G T GA  G A+ IPFA+ 
Sbjct  990   YDIADLVCARYYNGIMVLPGVANDDKMTMYTASL-----TGGITLGALSGGAVAIPFAVA  1044

Query  902   MAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDS--------------LSSTASALGK  947
             +  R N + +  +VL +NQ+++AN FN AIG I  +              L++ A AL K
Sbjct  1045  VQARLNYVALQTDVLNKNQQILANAFNQAIGNITQAFGKVNDAIHQTSKGLATVAKALAK  1104

Query  948   LQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTY  1007
             +QDVVN   QAL+ L  QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L  +
Sbjct  1105  VQDVVNTQGQALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAF  1164

Query  1008  VTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTY  1067
             V+Q L R AE+RAS  LA  K++ECV  QS+R  FCG G HL S   +AP+G++F H   
Sbjct  1165  VSQTLTRQAEVRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVL  1224

Query  1068  VPAQEKNFTTAPAIC-HDGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNT  1120
             +P   +  T    IC  DG   F       +  +F +    +++T R  Y+P++ T+ + 
Sbjct  1225  LPTAYETVTAWSGICASDGSRTFGLVVEDVQLTLFRNLDEKFYLTPRTMYQPRVATSSDF  1284

Query  1121  FVSGNCDVVIGIVNNTVYD--PLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGINA  1174
                  CDV+   VN TV +   + P+      + ++ L+ +  N T P++ L DI   +A
Sbjct  1285  VQIEGCDVL--FVNGTVIELPSIIPDYIDINQTVQDILENFRPNWTVPELPL-DI--FHA  1339

Query  1175  SVVNIQKEIDRLN-----------EVA---KNLNESLIDLQELGKYEQYIKWPWYIWLGF  1220
             + +N+  EI+ L            E+A    N+N +L++L+ L + E Y+KWPWY+WL  
Sbjct  1340  TYLNLTGEINDLEFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--  1397

Query  1221  IAGLIAIVMVTIML  1234
             + GL+ I  + I+L
Sbjct  1398  LIGLVVIFCIPILL  1411


>sp|Q91AV1|SPIKE_PEDV7 Spike glycoprotein OS=Porcine epidemic 
diarrhea virus (strain CV777) OX=229032 GN=S PE=1 SV=1
Length=1383

 Score = 314 bits (805),  Expect = 4e-87, Method: Compositional matrix adjust.
 Identities = 228/749 (30%), Positives = 351/749 (47%), Gaps = 101/749 (13%)

Query  521   PATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQ  580
             P  + G    + +  + C  +   G  G G++T +N   L    +  D      A ++  
Sbjct  629   PKPLEGITDVSFMTLDVCTKYTIYGFKGEGIITLTNSSILAGVYYTSDSGQLL-AFKNVT  687

Query  581   TLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGS  640
             +  +  +TPCSF            S Q A +  D+      V +          + S  +
Sbjct  688   SGAVYSVTPCSF------------SEQAAYVNDDI------VGV----------ISSLSN  719

Query  641   NVFQTRAGCLIGAEHVNNSYECDIPI----GAGICASYQTQTNSPRRARSVASQSIIAYT  696
             + F           H N+   C  P+      G+C S      S     S   Q  IA T
Sbjct  720   STFNNTRELPGFFYHSNDGSNCTEPVLVYSNIGVCKS-----GSIGYVPSQYGQVKIAPT  774

Query  697   MSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQY  756
             ++            +I+IPTNF++S+ TE L +  T  SVDC  Y+C  ++ C  LL QY
Sbjct  775   VT-----------GNISIPTNFSMSIRTEYLQLYNTPVSVDCATYVCNGNSRCKQLLTQY  823

Query  757   GSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGG--FNFSQILP----DPS  810
              + C  +  AL   A  +      +    ++  +   I  F G  +NF+ +L     DP+
Sbjct  824   TAACKTIESALQLSARLESVEVNSMLTISEEALQLATISSFNGDGYNFTNVLGASVYDPA  883

Query  811   KP---SKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDIAARDLICAQKFNGLTVLPPLLT  866
                   KRS IEDLLFNKV     G + + Y  C    +  DL+CAQ ++G+ VLP ++ 
Sbjct  884   SGRVVQKRSVIEDLLFNKVVTNGLGTVDEDYKRCSNGRSVADLVCAQYYSGVMVLPGVVD  943

Query  867   DEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ  926
              E +  Y+++L+ G    G T    AA  +PF+  +  R N + +  +VL  NQ+L+A  
Sbjct  944   AEKLHMYSASLIGGMALGGIT----AAAALPFSYAVQARLNYLALQTDVLQRNQQLLAES  999

Query  927   FNSAIGKIQDS--------------LSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGA  972
             FNSAIG I  +              L++ A AL K+Q+VVN    ALN L  QL  NF A
Sbjct  1000  FNSAIGNITSAFESVKEAISQTSKGLNTVAHALTKVQEVVNSQGSALNQLTVQLQHNFQA  1059

Query  973   ISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSEC  1032
             ISS ++DI SRLD + A+VQ+DRLITGRL +L  +V Q L +  E++AS  LA  K++EC
Sbjct  1060  ISSSIDDIYSRLDILSADVQVDRLITGRLSALNAFVAQTLTKYTEVQASRKLAQQKVNEC  1119

Query  1033  VLGQSKRVDFC-GKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFP-  1090
             V  QS+R  FC G G H+ S  Q+AP G++FLH   VP    N      +C +G+     
Sbjct  1120  VKSQSQRYGFCGGDGEHIFSLVQAAPQGLLFLHTVLVPGDFVNVLAIAGLCVNGEIALTL  1179

Query  1091  REGVFV--------SNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVV-IGIVNNTVYDPL  1141
             RE   V           T +FV+ R  +EP+  T  +     +C V  + + ++ + D +
Sbjct  1180  REPGLVLFTHELQTYTATEYFVSSRRMFEPRKPTVSDFVQIESCVVTYVNLTSDQLPDVI  1239

Query  1142  QPELDSFK--EELDKYFKNHTSPDVDL-----------GDISGINASVVNIQKEIDRLNE  1188
                +D  K  +E+     N T P + L           G+I+ +     +++   + L  
Sbjct  1240  PDYIDVNKTLDEILASLPNRTGPSLPLDVFNATYLNLTGEIADLEQRSESLRNTTEELRS  1299

Query  1189  VAKNLNESLIDLQELGKYEQYIKWPWYIW  1217
             +  N+N +L+DL+ L + E YIKWPW++W
Sbjct  1300  LINNINNTLVDLEWLNRVETYIKWPWWVW  1328


>sp|Q6GH02|TELL_STAAR TelA-like protein SAR1418 OS=Staphylococcus 
aureus (strain MRSA252) OX=282458 GN=SAR1418 PE=3 SV=1
Length=378

 Score = 37.4 bits (85),  Expect = 0.93, Method: Composition-based stats.
 Identities = 32/83 (39%), Positives = 44/83 (53%), Gaps = 10/83 (12%)

Query  931   IGKIQDSLSSTASALGKLQDVVNQNAQALNT-LVKQLSSNFGAISSVLNDILSRLDKVEA  989
             +G I D+LS   S   KL+ V   N   LNT     L   F    S +N+I SR+  V A
Sbjct  82    VGPIGDTLSDLMS---KLKSV---NPNELNTDKPSMLKRIFSRAKSSINEIFSRMQSVSA  135

Query  990   EVQIDRLITGRLQSLQTYVTQQL  1012
               Q+DR IT +LQ  QT++T+ +
Sbjct  136   --QVDR-ITIQLQKHQTHLTRDI  155


>sp|Q5HG14|TELL_STAAC TelA-like protein SACOL1441 OS=Staphylococcus 
aureus (strain COL) OX=93062 GN=SACOL1441 PE=3 SV=1
Length=378

 Score = 37.4 bits (85),  Expect = 0.93, Method: Composition-based stats.
 Identities = 32/83 (39%), Positives = 44/83 (53%), Gaps = 10/83 (12%)

Query  931   IGKIQDSLSSTASALGKLQDVVNQNAQALNT-LVKQLSSNFGAISSVLNDILSRLDKVEA  989
             +G I D+LS   S   KL+ V   N   LNT     L   F    S +N+I SR+  V A
Sbjct  82    VGPIGDTLSDLMS---KLKSV---NPNELNTDKPSMLKRIFSRAKSSINEIFSRMQSVSA  135

Query  990   EVQIDRLITGRLQSLQTYVTQQL  1012
               Q+DR IT +LQ  QT++T+ +
Sbjct  136   --QVDR-ITIQLQKHQTHLTRDI  155


>sp|Q2FYM7|TELL_STAA8 TelA-like protein SAOUHSC_01408 OS=Staphylococcus 
aureus (strain NCTC 8325 / PS 47) OX=93061 GN=SAOUHSC_01408 
PE=3 SV=1
Length=378

 Score = 37.4 bits (85),  Expect = 0.93, Method: Composition-based stats.
 Identities = 32/83 (39%), Positives = 44/83 (53%), Gaps = 10/83 (12%)

Query  931   IGKIQDSLSSTASALGKLQDVVNQNAQALNT-LVKQLSSNFGAISSVLNDILSRLDKVEA  989
             +G I D+LS   S   KL+ V   N   LNT     L   F    S +N+I SR+  V A
Sbjct  82    VGPIGDTLSDLMS---KLKSV---NPNELNTDKPSMLKRIFSRAKSSINEIFSRMQSVSA  135

Query  990   EVQIDRLITGRLQSLQTYVTQQL  1012
               Q+DR IT +LQ  QT++T+ +
Sbjct  136   --QVDR-ITIQLQKHQTHLTRDI  155


>sp|Q2FH32|TELL_STAA3 TelA-like protein SAUSA300_1299 OS=Staphylococcus 
aureus (strain USA300) OX=367830 GN=SAUSA300_1299 
PE=3 SV=1
Length=378

 Score = 37.4 bits (85),  Expect = 0.93, Method: Composition-based stats.
 Identities = 32/83 (39%), Positives = 44/83 (53%), Gaps = 10/83 (12%)

Query  931   IGKIQDSLSSTASALGKLQDVVNQNAQALNT-LVKQLSSNFGAISSVLNDILSRLDKVEA  989
             +G I D+LS   S   KL+ V   N   LNT     L   F    S +N+I SR+  V A
Sbjct  82    VGPIGDTLSDLMS---KLKSV---NPNELNTDKPSMLKRIFSRAKSSINEIFSRMQSVSA  135

Query  990   EVQIDRLITGRLQSLQTYVTQQL  1012
               Q+DR IT +LQ  QT++T+ +
Sbjct  136   --QVDR-ITIQLQKHQTHLTRDI  155


>sp|P60108|TELL_STAAN TelA-like protein SA1238 OS=Staphylococcus 
aureus (strain N315) OX=158879 GN=SA1238 PE=1 SV=1
Length=378

 Score = 37.4 bits (85),  Expect = 0.95, Method: Composition-based stats.
 Identities = 32/83 (39%), Positives = 44/83 (53%), Gaps = 10/83 (12%)

Query  931   IGKIQDSLSSTASALGKLQDVVNQNAQALNT-LVKQLSSNFGAISSVLNDILSRLDKVEA  989
             +G I D+LS   S   KL+ V   N   LNT     L   F    S +N+I SR+  V A
Sbjct  82    VGPIGDTLSDLMS---KLKSV---NPNELNTDKPSMLKRIFSRAKSSINEIFSRMQSVSA  135

Query  990   EVQIDRLITGRLQSLQTYVTQQL  1012
               Q+DR IT +LQ  QT++T+ +
Sbjct  136   --QVDR-ITIQLQKHQTHLTRDI  155


>sp|P60107|TELL_STAAM TelA-like protein SAV1406 OS=Staphylococcus 
aureus (strain Mu50 / ATCC 700699) OX=158878 GN=SAV1406 
PE=3 SV=1
Length=378

 Score = 37.4 bits (85),  Expect = 0.95, Method: Composition-based stats.
 Identities = 32/83 (39%), Positives = 44/83 (53%), Gaps = 10/83 (12%)

Query  931   IGKIQDSLSSTASALGKLQDVVNQNAQALNT-LVKQLSSNFGAISSVLNDILSRLDKVEA  989
             +G I D+LS   S   KL+ V   N   LNT     L   F    S +N+I SR+  V A
Sbjct  82    VGPIGDTLSDLMS---KLKSV---NPNELNTDKPSMLKRIFSRAKSSINEIFSRMQSVSA  135

Query  990   EVQIDRLITGRLQSLQTYVTQQL  1012
               Q+DR IT +LQ  QT++T+ +
Sbjct  136   --QVDR-ITIQLQKHQTHLTRDI  155


>sp|Q2YY12|TELL_STAAB TelA-like protein SAB1262 OS=Staphylococcus 
aureus (strain bovine RF122 / ET3-1) OX=273036 GN=SAB1262 
PE=3 SV=1
Length=378

 Score = 37.4 bits (85),  Expect = 0.96, Method: Composition-based stats.
 Identities = 32/83 (39%), Positives = 44/83 (53%), Gaps = 10/83 (12%)

Query  931   IGKIQDSLSSTASALGKLQDVVNQNAQALNT-LVKQLSSNFGAISSVLNDILSRLDKVEA  989
             +G I D+LS   S   KL+ V   N   LNT     L   F    S +N+I SR+  V A
Sbjct  82    VGPIGDTLSDLMS---KLKSV---NPNELNTDKPSMLKRIFSRAKSSINEIFSRMQSVSA  135

Query  990   EVQIDRLITGRLQSLQTYVTQQL  1012
               Q+DR IT +LQ  QT++T+ +
Sbjct  136   --QVDR-ITIQLQKHQTHLTRDI  155


>sp|Q8NWS1|TELL_STAAW TelA-like protein MW1294 OS=Staphylococcus 
aureus (strain MW2) OX=196620 GN=MW1294 PE=3 SV=1
Length=378

 Score = 37.0 bits (84),  Expect = 1.0, Method: Composition-based stats.
 Identities = 32/83 (39%), Positives = 44/83 (53%), Gaps = 10/83 (12%)

Query  931   IGKIQDSLSSTASALGKLQDVVNQNAQALNT-LVKQLSSNFGAISSVLNDILSRLDKVEA  989
             +G I D+LS   S   KL+ V   N   LNT     L   F    S +N+I SR+  V A
Sbjct  82    VGPIGDTLSDLIS---KLKSV---NPNELNTDKPSMLKRIFSRAKSSINEIFSRMQSVSA  135

Query  990   EVQIDRLITGRLQSLQTYVTQQL  1012
               Q+DR IT +LQ  QT++T+ +
Sbjct  136   --QVDR-ITIQLQKHQTHLTRDI  155


>sp|Q6G9F5|TELL_STAAS TelA-like protein SAS1347 OS=Staphylococcus 
aureus (strain MSSA476) OX=282459 GN=SAS1347 PE=3 SV=1
Length=378

 Score = 37.0 bits (84),  Expect = 1.0, Method: Composition-based stats.
 Identities = 32/83 (39%), Positives = 44/83 (53%), Gaps = 10/83 (12%)

Query  931   IGKIQDSLSSTASALGKLQDVVNQNAQALNT-LVKQLSSNFGAISSVLNDILSRLDKVEA  989
             +G I D+LS   S   KL+ V   N   LNT     L   F    S +N+I SR+  V A
Sbjct  82    VGPIGDTLSDLIS---KLKSV---NPNELNTDKPSMLKRIFSRAKSSINEIFSRMQSVSA  135

Query  990   EVQIDRLITGRLQSLQTYVTQQL  1012
               Q+DR IT +LQ  QT++T+ +
Sbjct  136   --QVDR-ITIQLQKHQTHLTRDI  155


>sp|B8F3P6|MUKF_GLAP5 Chromosome partition protein MukF OS=Glaesserella 
parasuis serovar 5 (strain SH0165) OX=557723 GN=mukF 
PE=3 SV=1
Length=443

 Score = 37.4 bits (85),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 30/122 (25%), Positives = 61/122 (50%), Gaps = 15/122 (12%)

Query  897   PFAMQMAYRFNGIGVTQNVLYENQK--------LIANQFNSAIGKIQDSLSSTASALGKL  948
             P    +A  F+ I ++Q ++ ENQ+        L++  ++ AI   Q  L  T+  L +L
Sbjct  160   PLKFSVAEIFDSIDLSQRMMDENQQQIRERIAMLLSQNWHEAIATCQQLLDETSGNLREL  219

Query  949   QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT  1006
             QDV+N +   L + + ++ S       +  D L  +D++   +Q  +DR+I+   Q++  
Sbjct  220   QDVLNASGDKLQSQLLRIQSCL-----IGRDDLDFVDQLIVNLQNKLDRIISWGQQAIDL  274

Query  1007  YV  1008
             ++
Sbjct  275   WI  276


>sp|Q38WX8|TYSY_LATSS Thymidylate synthase OS=Latilactobacillus 
sakei subsp. sakei (strain 23K) OX=314315 GN=thyA PE=3 SV=1
Length=316

 Score = 35.8 bits (81),  Expect = 2.2, Method: Compositional matrix adjust.
 Identities = 19/39 (49%), Positives = 23/39 (59%), Gaps = 1/39 (3%)

Query  822  LFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTV  860
            LFN   LAD GF KQYG+ LGDI  +     Q  +G T+
Sbjct  124  LFNDRILADEGFAKQYGE-LGDIYGKQWRAWQTRSGETI  161


>sp|P48479|NIM1_NEUCR G2-specific protein kinase nim-1 OS=Neurospora 
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / 
DSM 1257 / FGSC 987) OX=367110 GN=nim-1 PE=2 SV=2
Length=858

 Score = 35.8 bits (81),  Expect = 3.1, Method: Compositional matrix adjust.
 Identities = 16/64 (25%), Positives = 38/64 (59%), Gaps = 0/64 (0%)

Query  949   QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYV  1008
             ++ +N+  + L++ +  L +   +I + ++  L R  +V+A ++IDRL+   ++SLQ   
Sbjct  310   EETLNKRIRELDSKLSALETEKSSIRAEIDASLRREWEVKARLEIDRLVAQEIESLQQKF  369

Query  1009  TQQL  1012
              Q++
Sbjct  370   EQEV  373


>sp|A1S7B2|HFLD_SHEAM High frequency lysogenization protein HflD 
homolog OS=Shewanella amazonensis (strain ATCC BAA-1098 / 
SB2B) OX=326297 GN=hflD PE=3 SV=1
Length=204

 Score = 34.7 bits (78),  Expect = 3.7, Method: Composition-based stats.
 Identities = 26/82 (32%), Positives = 41/82 (50%), Gaps = 7/82 (9%)

Query  934   IQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQI  993
             ++  LS + +ALG L + +NQ  + LN            ++S+ +DI+S L     ++Q 
Sbjct  91    LERKLSRSNAALGMLSERINQIHRQLNHFAITDEQVIANLASIYSDIISNLG---PKLQ-  146

Query  994   DRLITGRLQSLQTYVTQQLIRA  1015
                ITG    LQ  + QQ IRA
Sbjct  147   ---ITGNPNVLQRPLVQQKIRA  165


>sp|A3PBY1|MEND_PROM0 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate 
synthase OS=Prochlorococcus marinus (strain 
MIT 9301) OX=167546 GN=menD PE=3 SV=1
Length=587

 Score = 35.0 bits (79),  Expect = 5.2, Method: Compositional matrix adjust.
 Identities = 29/117 (25%), Positives = 44/117 (38%), Gaps = 22/117 (19%)

Query  75   GTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQ  134
            G  R  NP+L     + F        I GW+   ++D     LLI NN  N+  ++ +  
Sbjct  456  GISRIKNPLLLVTGDLAFVHD-----INGWLIENSVDMNLTILLIDNNGGNIFNRIYKKN  510

Query  135  FCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLRE  191
               D F  ++      +W +      S +    F+ VS            NFK LRE
Sbjct  511  LKEDEFKKLFLMPKEINWSK-----LSESYQVKFKSVS------------NFKKLRE  550


>sp|Q9HG09|PEX14_PICPA Peroxisomal membrane protein PEX14 OS=Komagataella 
pastoris OX=4922 GN=PEX14 PE=1 SV=1
Length=425

 Score = 35.0 bits (79),  Expect = 5.3, Method: Compositional matrix adjust.
 Identities = 25/94 (27%), Positives = 42/94 (45%), Gaps = 11/94 (12%)

Query  905  RFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQAL-----  959
             F  +    N   E+QK    +     GKI+D+L+   + + K  +    N ++L     
Sbjct  144  EFTRVEALLNTFEEDQKAFYEEQREKSGKIEDTLTEIDAIISKTNEKNLNNEESLKYLKL  203

Query  960  ------NTLVKQLSSNFGAISSVLNDILSRLDKV  987
                  NTL+K + S    ISS L  I ++LD++
Sbjct  204  EIESIKNTLMKNIDSQKSTISSELGSIEAQLDEL  237


>sp|Q9PKF2|SKPL_CHLMU Skp-like protein OS=Chlamydia muridarum 
(strain MoPn / Nigg) OX=243161 GN=TC_0513 PE=3 SV=1
Length=173

 Score = 33.5 bits (75),  Expect = 7.8, Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 17/132 (13%)

Query  909   IGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQD------VVNQNAQALNTL  962
             +G  ++  +E  K   NQF+++IGK+++ LSS  S   KLQD      +    A  L   
Sbjct  40    LGKKESAEFEKMK---NQFSNSIGKMEEELSSIYS---KLQDDDYMEGLSESAAAELRKK  93

Query  963   VKQLSSNF----GAISSVLN-DILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAE  1017
              ++LSS +    G    +LN + L R+ K+   V+    +    + L   + + ++ A +
Sbjct  94    FEELSSEYNTAQGQYYQILNQNNLKRMQKIMEAVKKASEVVRIQEGLSALLNEDIVLAID  153

Query  1018  IRASANLAATKM  1029
               +    A  K+
Sbjct  154   TSSDKTDAVIKI  165


>sp|Q9UL45|BL1S6_HUMAN Biogenesis of lysosome-related organelles 
complex 1 subunit 6 OS=Homo sapiens OX=9606 GN=BLOC1S6 PE=1 
SV=1
Length=172

 Score = 33.1 bits (74),  Expect = 9.6, Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query  1145  LDSFKEELDKYFKNHTSPDVD--LGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQE  1202
             LD+ ++E+ K+ + H+  D++    +    +A +VNI+KE+  L+E    L +  + LQ+
Sbjct  82    LDTLEQEISKFKECHSMLDINALFAEAKHYHAKLVNIRKEMLMLHEKTSKLKKRALKLQQ  141



Lambda      K        H        a         alpha
   0.320    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 151247772180
Results from round 2


Query= sp|P0DTC2|SPIKE_SARS2 Spike glycoprotein OS=Severe acute respiratory
syndrome coronavirus 2 OX=2697049 GN=S PE=1 SV=1

Length=1273
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value
Sequences used in model and found again:

sp|P0DTC2|SPIKE_SARS2 Spike glycoprotein OS=Severe acute respirat...  1706    0.0  
sp|Q3LZX1|SPIKE_BCHK3 Spike glycoprotein OS=Bat coronavirus HKU3 ...  1624    0.0  
sp|P59594|SPIKE_SARS Spike glycoprotein OS=Severe acute respirato...  1624    0.0  
sp|Q3I5J5|SPIKE_BCRP3 Spike glycoprotein OS=Bat coronavirus Rp3/2...  1615    0.0  
sp|Q0Q475|SPIKE_BC279 Spike glycoprotein OS=Bat coronavirus 279/2...  1613    0.0  
sp|P11225|SPIKE_CVMJH Spike glycoprotein OS=Murine coronavirus (s...  1317    0.0  
sp|P11224|SPIKE_CVMA5 Spike glycoprotein OS=Murine coronavirus (s...  1273    0.0  
sp|A3EXG6|SPIKE_BCHK9 Spike glycoprotein OS=Bat coronavirus HKU9 ...  1200    0.0  
sp|Q0Q4F2|SPIKE_BC133 Spike glycoprotein OS=Bat coronavirus 133/2...  1140    0.0  
sp|P25191|SPIKE_CVBL9 Spike glycoprotein OS=Bovine coronavirus (s...  1138    0.0  
sp|A3EXD0|SPIKE_BCHK5 Spike glycoprotein OS=Bat coronavirus HKU5 ...  1129    0.0  
sp|A3EX94|SPIKE_BCHK4 Spike glycoprotein OS=Bat coronavirus HKU4 ...  1129    0.0  
sp|K9N5Q8|SPIKE_MERS1 Spike glycoprotein OS=Middle East respirato...  1110    0.0  
sp|Q9IKD1|SPIKE_CVRSD Spike glycoprotein OS=Rat coronavirus (stra...  1097    0.0  
sp|Q0ZME7|SPIKE_CVHN5 Spike glycoprotein OS=Human coronavirus HKU...  1094    0.0  
sp|Q14EB0|SPIKE_CVHN2 Spike glycoprotein OS=Human coronavirus HKU...  1092    0.0  
sp|P25193|SPIKE_CVBQ Spike glycoprotein OS=Bovine coronavirus (st...  1091    0.0  
sp|Q5MQD0|SPIKE_CVHN1 Spike glycoprotein OS=Human coronavirus HKU...  1050    0.0  
sp|Q9QAR5|SPIKE_CVBLS Spike glycoprotein OS=Bovine coronavirus (s...  995     0.0  
sp|P25192|SPIKE_CVBLY Spike glycoprotein OS=Bovine coronavirus (s...  986     0.0  
sp|Q8V436|SPIKE_CVBLU Spike glycoprotein OS=Bovine coronavirus (s...  985     0.0  
sp|Q9QAQ8|SPIKE_CVBOK Spike glycoprotein OS=Bovine coronavirus (s...  984     0.0  
sp|P36334|SPIKE_CVHOC Spike glycoprotein OS=Human coronavirus OC4...  963     0.0  
sp|P25194|SPIKE_CVBV Spike glycoprotein OS=Bovine coronavirus (st...  924     0.0  
sp|Q91A26|SPIKE_CVBEN Spike glycoprotein OS=Bovine coronavirus (s...  924     0.0  
sp|P15777|SPIKE_CVBM Spike glycoprotein OS=Bovine coronavirus (st...  919     0.0  
sp|P25190|SPIKE_CVBF Spike glycoprotein OS=Bovine coronavirus (st...  917     0.0  
sp|Q8BB25|SPIKE_CVP67 Spike glycoprotein OS=Porcine hemagglutinat...  914     0.0  
sp|P22432|SPIKE_CVM4 Spike glycoprotein OS=Murine coronavirus (st...  911     0.0  
sp|Q02385|SPIKE_CVMJC Spike glycoprotein OS=Murine coronavirus (s...  906     0.0  
sp|Q8JSP8|SPIKE_CVPIA Spike glycoprotein OS=Porcine hemagglutinat...  903     0.0  
sp|Q7T6T3|SPIKE_CVCBG Spike glycoprotein OS=Canine coronavirus (s...  797     0.0  
sp|P10033|SPIKE_FIPV Spike glycoprotein OS=Feline coronavirus (st...  796     0.0  
sp|Q65984|SPIKE_CVCAK Spike glycoprotein OS=Canine coronavirus (s...  795     0.0  
sp|P27655|SPIKE_CVPR8 Spike glycoprotein OS=Porcine respiratory c...  794     0.0  
sp|P07946|SPIKE_CVPPU Spike glycoprotein OS=Porcine transmissible...  794     0.0  
sp|Q01977|SPIKE_CVPRT Spike glycoprotein OS=Porcine transmissible...  791     0.0  
sp|P24413|SPIKE_CVPRM Spike glycoprotein OS=Porcine respiratory c...  790     0.0  
sp|P33470|SPIKE_CVPMI Spike glycoprotein OS=Porcine transmissible...  789     0.0  
sp|P18450|SPIKE_CVPFS Spike glycoprotein OS=Porcine transmissible...  783     0.0  
sp|P36300|SPIKE_CVCAI Spike glycoprotein OS=Canine coronavirus (s...  780     0.0  
sp|P15423|SPIKE_CVH22 Spike glycoprotein OS=Human coronavirus 229...  769     0.0  
sp|Q6Q1S2|SPIKE_CVHNL Spike glycoprotein OS=Human coronavirus NL6...  754     0.0  
sp|Q0Q466|SPIKE_BC512 Spike glycoprotein OS=Bat coronavirus 512/2...  709     0.0  
sp|Q91AV1|SPIKE_PEDV7 Spike glycoprotein OS=Porcine epidemic diar...  707     0.0  
sp|P12651|SPIKE_IBVM Spike glycoprotein OS=Avian infectious bronc...  697     0.0  
sp|P12722|SPIKE_IBVD2 Spike glycoprotein OS=Avian infectious bron...  689     0.0  
sp|P05135|SPIKE_IBV6 Spike glycoprotein OS=Avian infectious bronc...  689     0.0  
sp|P12650|SPIKE_IBVK Spike glycoprotein OS=Avian infectious bronc...  688     0.0  
sp|P11223|SPIKE_IBVB Spike glycoprotein OS=Avian infectious bronc...  687     0.0  

Sequences not found previously or not previously below threshold:

sp|P17662|SPIKE_IBVD3 Spike glycoprotein (Fragment) OS=Avian infe...  52.9    2e-05
sp|P30207|SPIKE_IBVU2 Spike glycoprotein (Fragment) OS=Avian infe...  52.5    2e-05
sp|P30208|SPIKE_IBVU3 Spike glycoprotein (Fragment) OS=Avian infe...  52.1    3e-05
sp|P30206|SPIKE_IBVU1 Spike glycoprotein (Fragment) OS=Avian infe...  52.1    3e-05
sp|B0R6I4|BAST_HALS3 Transducer protein BasT OS=Halobacterium sal...  50.2    1e-04
sp|B8F3P6|MUKF_GLAP5 Chromosome partition protein MukF OS=Glaesse...  41.7    0.043
sp|A8F461|FLGI_PSELT Flagellar P-ring protein OS=Pseudothermotoga...  40.5    0.075
sp|P30141|MRP4_STRPY Fibrinogen- and Ig-binding protein OS=Strept...  40.1    0.12 
sp|Q3BUW9|CCME1_XANC5 Cytochrome c-type biogenesis protein CcmE 1...  38.2    0.15 
sp|Q6LUI8|PNP_PHOPR Polyribonucleotide nucleotidyltransferase OS=...  38.2    0.66 
sp|Q9X0M7|MCP2_THEMA Methyl-accepting chemotaxis protein 2 OS=The...  37.8    0.77 
sp|Q08581|SLK19_YEAST Kinetochore protein SLK19 OS=Saccharomyces ...  37.8    0.92 
sp|Q8PLW2|CCME1_XANAC Cytochrome c-type biogenesis protein CcmE 1...  35.9    1.1  
sp|Q8PA33|CCME1_XANCP Cytochrome c-type biogenesis protein CcmE 1...  35.5    1.4  
sp|Q4UTK2|CCME1_XANC8 Cytochrome c-type biogenesis protein CcmE 1...  35.5    1.4  
sp|P0DM86|CRFC_ECOLX Clamp-binding protein CrfC OS=Escherichia co...  36.7    1.8  
sp|Q008X4|SPIKE_WBV24 Spike glycoprotein OS=White bream virus (is...  36.7    1.9  
sp|O54990|PROM1_MOUSE Prominin-1 OS=Mus musculus OX=10090 GN=Prom...  36.7    2.0  
sp|A5N4M6|SYC_CLOK5 Cysteine--tRNA ligase OS=Clostridium kluyveri...  35.5    3.5  
sp|B9DY88|SYC_CLOK1 Cysteine--tRNA ligase OS=Clostridium kluyveri...  35.5    3.5  
sp|Q09094|REC15_SCHPO Meiotic recombination protein rec15 OS=Schi...  34.4    3.5  
sp|P10865|FUS_NDVM Fusion glycoprotein F0 OS=Newcastle disease vi...  35.5    4.0  
sp|P35936|FUS_NDVD Fusion glycoprotein F0 OS=Newcastle disease vi...  35.1    4.7  
sp|Q9X1E2|MCP4_THEMA Methyl-accepting chemotaxis protein 4 OS=The...  35.1    5.2  
sp|F1QC17|EMI1A_DANRE EMILIN-1-A OS=Danio rerio OX=7955 GN=emilin...  35.1    5.2  
sp|Q6GN42|CTL4_XENLA Choline transporter-like protein 4 OS=Xenopu...  35.1    5.4  
sp|P33612|FUS_NDVH3 Fusion glycoprotein F0 OS=Newcastle disease v...  35.1    5.4  
sp|P33614|FUS_NDVL Fusion glycoprotein F0 OS=Newcastle disease vi...  34.7    5.9  
sp|P33615|FUS_NDVQ Fusion glycoprotein F0 OS=Newcastle disease vi...  34.7    6.3  
sp|P14623|FUS_NDVI Fusion glycoprotein F0 OS=Newcastle disease vi...  34.7    6.5  
sp|P26628|FUS_NDVT Fusion glycoprotein F0 OS=Newcastle disease vi...  34.4    7.6  


>sp|P0DTC2|SPIKE_SARS2 Spike glycoprotein OS=Severe acute respiratory 
syndrome coronavirus 2 OX=2697049 GN=S PE=1 SV=1
Length=1273

 Score = 1706 bits (4418),  Expect = 0.0, Method: Composition-based stats.
 Identities = 1273/1273 (100%), Positives = 1273/1273 (100%), Gaps = 0/1273 (0%)

Query  1     MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFS  60
             MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFS
Sbjct  1     MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFS  60

Query  61    NVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIV  120
             NVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIV
Sbjct  61    NVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIV  120

Query  121   NNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLE  180
             NNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLE
Sbjct  121   NNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLE  180

Query  181   GKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT  240
             GKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT
Sbjct  181   GKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT  240

Query  241   LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETK  300
             LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETK
Sbjct  241   LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETK  300

Query  301   CTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISN  360
             CTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISN
Sbjct  301   CTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISN  360

Query  361   CVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIAD  420
             CVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIAD
Sbjct  361   CVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIAD  420

Query  421   YNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC  480
             YNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC
Sbjct  421   YNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC  480

Query  481   NGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVN  540
             NGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVN
Sbjct  481   NGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVN  540

Query  541   FNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITP  600
             FNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITP
Sbjct  541   FNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITP  600

Query  601   GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY  660
             GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY
Sbjct  601   GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY  660

Query  661   ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI  720
             ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI
Sbjct  661   ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI  720

Query  721   SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQE  780
             SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQE
Sbjct  721   SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQE  780

Query  781   VFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDC  840
             VFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDC
Sbjct  781   VFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDC  840

Query  841   LGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAM  900
             LGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAM
Sbjct  841   LGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAM  900

Query  901   QMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALN  960
             QMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALN
Sbjct  901   QMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALN  960

Query  961   TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA  1020
             TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA
Sbjct  961   TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA  1020

Query  1021  SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPA  1080
             SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPA
Sbjct  1021  SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPA  1080

Query  1081  ICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP  1140
             ICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP
Sbjct  1081  ICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP  1140

Query  1141  LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL  1200
             LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL
Sbjct  1141  LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL  1200

Query  1201  QELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDD  1260
             QELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDD
Sbjct  1201  QELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDD  1260

Query  1261  SEPVLKGVKLHYT  1273
             SEPVLKGVKLHYT
Sbjct  1261  SEPVLKGVKLHYT  1273


>sp|Q3LZX1|SPIKE_BCHK3 Spike glycoprotein OS=Bat coronavirus HKU3 
OX=442736 GN=S PE=3 SV=1
Length=1242

 Score = 1624 bits (4205),  Expect = 0.0, Method: Composition-based stats.
 Identities = 965/1273 (76%), Positives = 1084/1273 (85%), Gaps = 35/1273 (3%)

Query  1     MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFS  60
             +F FL  L      C  ++ + Q   A  +S  RGVYY D +FRS VLH TQD FLPF S
Sbjct  5     IFAFLANLAKAQEGCGIISRKPQPKMAQVSSSRRGVYYNDDIFRSDVLHLTQDYFLPFDS  64

Query  61    NVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIV  120
             N+T + +++V        FDNP+L F DGVYFA+TEKSN+IRGWIFG++ D+ TQS +IV
Sbjct  65    NLTQYFSLNVDSDR-YTYFDNPILDFGDGVYFAATEKSNVIRGWIFGSSFDNTTQSAVIV  123

Query  121   NNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLE  180
             NN+T+++I+VC F  C +P   V       +W      VY SA NCT++ V + F +D  
Sbjct  124   NNSTHIIIRVCNFNLCKEPMYTVSRGTQQNAW------VYQSAFNCTYDRVEKSFQLDTT  177

Query  181   GKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT  240
              K GNFK+LRE+VFKN DG+  +Y  +T +NL R LP GFS L+P++ LP GINIT ++ 
Sbjct  178   PKTGNFKDLREYVFKNRDGFLSVYQTYTAVNLPRGLPTGFSVLKPILKLPFGINITSYRV  237

Query  241   LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETK  300
             ++A+         ++S +   +AAYYVG L+  TF+L++NENGTITDAVDC+ +PL+E K
Sbjct  238   VMAMF------SQTTSNFLPESAAYYVGNLKYSTFMLRFNENGTITDAVDCSQNPLAELK  291

Query  301   CTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISN  360
             CT+K+F V+KGIYQTSNFRV PT+ ++RFPNITN CPF +VFNATRF +VYAW R +IS+
Sbjct  292   CTIKNFNVDKGIYQTSNFRVSPTQEVIRFPNITNRCPFDKVFNATRFPNVYAWERTKISD  351

Query  361   CVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIAD  420
             CVADY+VLYNS SFSTFKCYGVSP+KL DLCFT+VYAD+F+IR  EVRQ+APG+TG IAD
Sbjct  352   CVADYTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGETGVIAD  411

Query  421   YNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC  480
             YNYKLPDDFTGCVIAWN+   D+      NY YR  RK+ LKPFERD+S++         
Sbjct  412   YNYKLPDDFTGCVIAWNTAKHDTG-----NYYYRSHRKTKLKPFERDLSSD---------  457

Query  481   NGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVN  540
                   N  + L +Y F P   V YQ  RVVVLSFELL+APATVCGPK ST LVKN+CVN
Sbjct  458   ----DGNGVYTLSTYDFNPNVPVAYQATRVVVLSFELLNAPATVCGPKLSTELVKNQCVN  513

Query  541   FNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITP  600
             FNFNGL GTGVLT S+K+F  FQQFGRD +D TD+VRDPQTLEILDI+PCSFGGVSVITP
Sbjct  514   FNFNGLKGTGVLTSSSKRFQSFQQFGRDTSDFTDSVRDPQTLEILDISPCSFGGVSVITP  573

Query  601   GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY  660
             GTN S++VAVLYQDVNCT+VP AI ADQLTP WRVYSTG NVFQT+AGCLIGAEHVN SY
Sbjct  574   GTNASSEVAVLYQDVNCTDVPTAIRADQLTPAWRVYSTGVNVFQTQAGCLIGAEHVNASY  633

Query  661   ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI  720
             ECDIPIGAGICASY T +      RS   +SI+AYTMSLGAENS+AY+NNSIAIPTNF+I
Sbjct  634   ECDIPIGAGICASYHTASV----LRSTGQKSIVAYTMSLGAENSIAYANNSIAIPTNFSI  689

Query  721   SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQE  780
             SVTTE++PVSM KT+VDCTMYICGDS ECSNLLLQYGSFCTQLNRALTGIA+EQDKNTQE
Sbjct  690   SVTTEVMPVSMAKTAVDCTMYICGDSLECSNLLLQYGSFCTQLNRALTGIAIEQDKNTQE  749

Query  781   VFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDC  840
             VFAQVKQ+YKTP IKDFGGFNFSQILPDPSKP+KRSFIEDLLFNKVTLADAGF+KQYGDC
Sbjct  750   VFAQVKQMYKTPAIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLADAGFMKQYGDC  809

Query  841   LGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAM  900
             LGD++ARDLICAQKFNGLTVLPPLLTDEM+A YT+AL++GT T+GWTFGAGAALQIPFAM
Sbjct  810   LGDVSARDLICAQKFNGLTVLPPLLTDEMVAAYTAALVSGTATAGWTFGAGAALQIPFAM  869

Query  901   QMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALN  960
             QMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQ+SLSSTASALGKLQDVVNQNAQALN
Sbjct  870   QMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQESLSSTASALGKLQDVVNQNAQALN  929

Query  961   TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA  1020
             TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA
Sbjct  930   TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA  989

Query  1021  SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPA  1080
             SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVP+QEKNFTTAPA
Sbjct  990   SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPSQEKNFTTAPA  1049

Query  1081  ICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP  1140
             ICH+GKA+FPREGVFVSNGT WF+TQRNFY PQ+ITTDNTFVSGNCDVVIGI+NNTVYDP
Sbjct  1050  ICHEGKAYFPREGVFVSNGTSWFITQRNFYSPQLITTDNTFVSGNCDVVIGIINNTVYDP  1109

Query  1141  LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL  1200
             LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL
Sbjct  1110  LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL  1169

Query  1201  QELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDD  1260
             QELGKYEQYIKWPWY+WLGFIAGLIAIVMVTI+LCCMTSCCSCLKG CSCGSCCKFDEDD
Sbjct  1170  QELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDD  1229

Query  1261  SEPVLKGVKLHYT  1273
             SEPVLKGVKLHYT
Sbjct  1230  SEPVLKGVKLHYT  1242


>sp|P59594|SPIKE_SARS Spike glycoprotein OS=Severe acute respiratory 
syndrome coronavirus OX=694009 GN=S PE=1 SV=1
Length=1255

 Score = 1624 bits (4204),  Expect = 0.0, Method: Composition-based stats.
 Identities = 971/1277 (76%), Positives = 1108/1277 (87%), Gaps = 26/1277 (2%)

Query  1     MFVFLVLLPLVSSQCVNLTTRTQ--LPPAYT--NSFTRGVYYPDKVFRSSVLHSTQDLFL  56
             MF+FL+ L L S   ++  T       P YT   S  RGVYYPD++FRS  L+ TQDLFL
Sbjct  1     MFIFLLFLTLTSGSDLDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFL  60

Query  57    PFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQS  116
             PF+SNVT FH I+         F NPV+PF DG+YFA+TEKSN++RGW+FG+T+++K+QS
Sbjct  61    PFYSNVTGFHTIN-------HTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQS  113

Query  117   LLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFL  176
             ++I+NN+TNVVI+ C F+ C++PF  V          ++   ++ +A NCTFEY+S  F 
Sbjct  114   VIIINNSTNVVIRACNFELCDNPFFAVSK----PMGTQTHTMIFDNAFNCTFEYISDAFS  169

Query  177   MDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINIT  236
             +D+  K GNFK+LREFVFKN DG+  +Y  + PI++VRDLP GF+ L+P+  LP+GINIT
Sbjct  170   LDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINIT  229

Query  237   RFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPL  296
              F+ +L    +  +P      W   AAAY+VGYL+P TF+LKY+ENGTITDAVDC+ +PL
Sbjct  230   NFRAIL----TAFSPAQDI--WGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPL  283

Query  297   SETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRK  356
             +E KC++KSF ++KGIYQTSNFRV P+  +VRFPNITNLCPFGEVFNAT+F SVYAW RK
Sbjct  284   AELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVYAWERK  343

Query  357   RISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTG  416
             +ISNCVADYSVLYNS  FSTFKCYGVS TKLNDLCF+NVYADSFV++GD+VRQIAPGQTG
Sbjct  344   KISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTG  403

Query  417   KIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAG  476
              IADYNYKLPDDF GCV+AWN+ N+D+   GNYNY YR  R   L+PFERDIS   +   
Sbjct  404   VIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPD  463

Query  477   STPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKN  536
               PC      NCY+PL  YGF  T G+GYQPYRVVVLSFELL+APATVCGPK ST+L+KN
Sbjct  464   GKPCTP-PALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKN  522

Query  537   KCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVS  596
             +CVNFNFNGLTGTGVLT S+K+F PFQQFGRD++D TD+VRDP+T EILDI+PCSFGGVS
Sbjct  523   QCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVS  582

Query  597   VITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHV  656
             VITPGTN S++VAVLYQDVNCT+V  AIHADQLTP WR+YSTG+NVFQT+AGCLIGAEHV
Sbjct  583   VITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHV  642

Query  657   NNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPT  716
             + SYECDIPIGAGICASY T +      RS + +SI+AYTMSLGA++S+AYSNN+IAIPT
Sbjct  643   DTSYECDIPIGAGICASYHTVSL----LRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPT  698

Query  717   NFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDK  776
             NF+IS+TTE++PVSM KTSVDC MYICGDSTEC+NLLLQYGSFCTQLNRAL+GIA EQD+
Sbjct  699   NFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDR  758

Query  777   NTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQ  836
             NT+EVFAQVKQ+YKTP +K FGGFNFSQILPDP KP+KRSFIEDLLFNKVTLADAGF+KQ
Sbjct  759   NTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQ  818

Query  837   YGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQI  896
             YG+CLGDI ARDLICAQKFNGLTVLPPLLTD+MIA YT+AL++GT T+GWTFGAGAALQI
Sbjct  819   YGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQI  878

Query  897   PFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNA  956
             PFAMQMAYRFNGIGVTQNVLYENQK IANQFN AI +IQ+SL++T++ALGKLQDVVNQNA
Sbjct  879   PFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNA  938

Query  957   QALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAA  1016
             QALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAA
Sbjct  939   QALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAA  998

Query  1017  EIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFT  1076
             EIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQ+APHGVVFLHVTYVP+QE+NFT
Sbjct  999   EIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFT  1058

Query  1077  TAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNT  1136
             TAPAICH+GKA+FPREGVFV NGT WF+TQRNF+ PQIITTDNTFVSGNCDVVIGI+NNT
Sbjct  1059  TAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNT  1118

Query  1137  VYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNES  1196
             VYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNES
Sbjct  1119  VYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNES  1178

Query  1197  LIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKF  1256
             LIDLQELGKYEQYIKWPWY+WLGFIAGLIAIVMVTI+LCCMTSCCSCLKG CSCGSCCKF
Sbjct  1179  LIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKF  1238

Query  1257  DEDDSEPVLKGVKLHYT  1273
             DEDDSEPVLKGVKLHYT
Sbjct  1239  DEDDSEPVLKGVKLHYT  1255


>sp|Q3I5J5|SPIKE_BCRP3 Spike glycoprotein OS=Bat coronavirus Rp3/2004 
OX=349344 GN=S PE=1 SV=1
Length=1241

 Score = 1615 bits (4183),  Expect = 0.0, Method: Composition-based stats.
 Identities = 956/1273 (75%), Positives = 1080/1273 (85%), Gaps = 36/1273 (3%)

Query  1     MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFS  60
             +  FL  L      C  ++ + Q   A  +S  RGVYY D +FRS+VLH TQD FLPF S
Sbjct  5     ILAFLASLAKAQEGCGIISRKPQPKMAQVSSSRRGVYYNDDIFRSNVLHLTQDYFLPFDS  64

Query  61    NVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIV  120
             N+T + +++V        FDNP+L F DGVYFA+TEKSN+IRGWIFG+T D+ TQS +IV
Sbjct  65    NLTQYFSLNVDSDR-FTYFDNPILDFGDGVYFAATEKSNVIRGWIFGSTFDNTTQSAVIV  123

Query  121   NNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLE  180
             NN+T+++I+VC F  C +P   V       SW      VY SA NCT++ V + F +D  
Sbjct  124   NNSTHIIIRVCNFNLCKEPMYTVSRGAQQSSW------VYQSAFNCTYDRVEKSFQLDTA  177

Query  181   GKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT  240
              K GNFK+LRE+VFKN DG+  +Y  +T +NL R LP GFS L P++ LP GINIT ++ 
Sbjct  178   PKTGNFKDLREYVFKNRDGFLSVYQTYTAVNLPRGLPIGFSVLRPILKLPFGINITSYRV  237

Query  241   LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETK  300
             ++A+         ++S +   +AAYYVG L+  TF+L +NENGTIT+A+DCA +PL+E K
Sbjct  238   VMAMF------SQTTSNFLPESAAYYVGNLKYTTFMLSFNENGTITNAIDCAQNPLAELK  291

Query  301   CTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISN  360
             CT+K+F V KGIYQTSNFRV PT+ ++RFPNITN CPF +VFNATRF +VYAW R +IS+
Sbjct  292   CTIKNFNVSKGIYQTSNFRVSPTQEVIRFPNITNRCPFDKVFNATRFPNVYAWERTKISD  351

Query  361   CVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIAD  420
             CVADY+VLYNS SFSTFKCYGVSP+KL DLCFT+VYAD+F+IR  EVRQ+APG+TG IAD
Sbjct  352   CVADYTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGETGVIAD  411

Query  421   YNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC  480
             YNYKLPDDFTGCVIAWN+   D        Y YR  RK+ LKPFERD+S++         
Sbjct  412   YNYKLPDDFTGCVIAWNTAKQDQG-----QYYYRSHRKTKLKPFERDLSSDE--------  458

Query  481   NGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVN  540
                   N    L +Y F P+  V YQ  RVVVLSFELL+APATVCGPK ST LVKN+CVN
Sbjct  459   ------NGVRTLSTYDFYPSVPVAYQATRVVVLSFELLNAPATVCGPKLSTQLVKNQCVN  512

Query  541   FNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITP  600
             FNFNGL GTGVLTES+K+F  FQQFGRD +D TD+VRDPQTLEILDI+PCSFGGVSVITP
Sbjct  513   FNFNGLKGTGVLTESSKRFQSFQQFGRDTSDFTDSVRDPQTLEILDISPCSFGGVSVITP  572

Query  601   GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY  660
             GTN S++VAVLYQDVNCT+VP AIHADQLTP WRVYSTG+NVFQT+AGCLIGAEHVN SY
Sbjct  573   GTNASSEVAVLYQDVNCTDVPAAIHADQLTPAWRVYSTGTNVFQTQAGCLIGAEHVNASY  632

Query  661   ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI  720
             ECDIPIGAGICASY T +      RSV  +SI+AYTMSLGAENS+AY+NNSIAIPTNF+I
Sbjct  633   ECDIPIGAGICASYHTAST----LRSVGQKSIVAYTMSLGAENSIAYANNSIAIPTNFSI  688

Query  721   SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQE  780
             SVTTE++PVSM KTSVDCTMYICGDS ECSNLLLQYGSFCTQLNRAL+GIA+EQDKNTQE
Sbjct  689   SVTTEVMPVSMAKTSVDCTMYICGDSLECSNLLLQYGSFCTQLNRALSGIAIEQDKNTQE  748

Query  781   VFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDC  840
             VFAQVKQ+YKTP IKDFGGFNFSQILPDPSKP+KRSFIEDLLFNKVTLADAGF+KQYG+C
Sbjct  749   VFAQVKQMYKTPAIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLADAGFMKQYGEC  808

Query  841   LGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAM  900
             LGDI+ARDLICAQKFNGLTVLPPLLTDEMIA YT+AL++GT T+GWTFGAG+ALQIPFAM
Sbjct  809   LGDISARDLICAQKFNGLTVLPPLLTDEMIAAYTAALVSGTATAGWTFGAGSALQIPFAM  868

Query  901   QMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALN  960
             QMAYRFNGIGVTQNVLYENQK IANQFN AI +IQ+SL++T++ALGKLQDVVNQNAQALN
Sbjct  869   QMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALN  928

Query  961   TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA  1020
             TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA
Sbjct  929   TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA  988

Query  1021  SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPA  1080
             SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQ+APHGVVFLHVTYVP+QE+NFTTAPA
Sbjct  989   SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPA  1048

Query  1081  ICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP  1140
             ICH+GKA+FPREGVFVSNGT WF+TQRNFY PQIITTDNTFV+G+CDVVIGI+NNTVYDP
Sbjct  1049  ICHEGKAYFPREGVFVSNGTSWFITQRNFYSPQIITTDNTFVAGSCDVVIGIINNTVYDP  1108

Query  1141  LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL  1200
             LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL
Sbjct  1109  LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL  1168

Query  1201  QELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDD  1260
             QELGKYEQYIKWPWY+WLGFIAGLIAIVMVTI+LCCMTSCCSCLKG CSCGSCCKFDEDD
Sbjct  1169  QELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDD  1228

Query  1261  SEPVLKGVKLHYT  1273
             SEPVLKGVKLHYT
Sbjct  1229  SEPVLKGVKLHYT  1241


>sp|Q0Q475|SPIKE_BC279 Spike glycoprotein OS=Bat coronavirus 279/2005 
OX=389167 GN=S PE=3 SV=1
Length=1241

 Score = 1613 bits (4177),  Expect = 0.0, Method: Composition-based stats.
 Identities = 951/1275 (75%), Positives = 1079/1275 (85%), Gaps = 38/1275 (3%)

Query  1     MFVFLVLLPLVSSQ--CVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPF  58
             + +F +L  L  +Q  C  ++ + Q      +S  RGVYY D +FRS VLH TQD FLPF
Sbjct  3     VLIFALLFSLAKAQEGCGIISRKPQPKMEKVSSSRRGVYYNDDIFRSDVLHLTQDYFLPF  62

Query  59    FSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLL  118
              SN+T + ++++  +N    FDNP+L F DGVYFA+TEKSN+IRGWIFG++ D+ TQS +
Sbjct  63    DSNLTQYFSLNID-SNKYTYFDNPILDFGDGVYFAATEKSNVIRGWIFGSSFDNTTQSAI  121

Query  119   IVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMD  178
             IVNN+T+++I+VC F  C +P   V       SW      VY SA NCT++ V + F +D
Sbjct  122   IVNNSTHIIIRVCNFNLCKEPMYTVSKGTQQSSW------VYQSAFNCTYDRVEKSFQLD  175

Query  179   LEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRF  238
                K GNFK+LRE+VFKN DG+  +Y  +T +NL R  P GFS L P++ LP GINIT +
Sbjct  176   TAPKTGNFKDLREYVFKNRDGFLSVYQTYTAVNLPRGFPAGFSVLRPILKLPFGINITSY  235

Query  239   QTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSE  298
             + ++ +   +      +S +   +AAYYVG L+  TF+L +NENGTITDAVDC+ +PL+E
Sbjct  236   RVVMTMFSQF------NSNFLPESAAYYVGNLKYTTFMLSFNENGTITDAVDCSQNPLAE  289

Query  299   TKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRI  358
              KCT+K+F V KGIYQTSNFRV PT+ +VRFPNITN CPF +VFNA+RF +VYAW R +I
Sbjct  290   LKCTIKNFNVSKGIYQTSNFRVTPTQEVVRFPNITNRCPFDKVFNASRFPNVYAWERTKI  349

Query  359   SNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKI  418
             S+CVADY+VLYNS SFSTFKCYGVSP+KL DLCFT+VYAD+F+IR  EVRQ+APG+TG I
Sbjct  350   SDCVADYTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGETGVI  409

Query  419   ADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGST  478
             ADYNYKLPDDFTGCVIAWN+   D        Y YR +RK  LKPFERD+S++       
Sbjct  410   ADYNYKLPDDFTGCVIAWNTAQQDQG-----QYYYRSYRKEKLKPFERDLSSDE------  458

Query  479   PCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKC  538
                     N  + L +Y F P+  V YQ  RVVVLSFELL+APATVCGPK ST LVKN+C
Sbjct  459   --------NGVYTLSTYDFYPSIPVEYQATRVVVLSFELLNAPATVCGPKLSTQLVKNQC  510

Query  539   VNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVI  598
             VNFNFNGL GTGVLT S+K+F  FQQFGRD +D TD+VRDPQTLEILDI+PCSFGGVSVI
Sbjct  511   VNFNFNGLRGTGVLTTSSKRFQSFQQFGRDTSDFTDSVRDPQTLEILDISPCSFGGVSVI  570

Query  599   TPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNN  658
             TPGTN S++VAVLYQDVNCT+VP +IHADQLTP WRVYSTG NVFQT+AGCLIGAEHVN 
Sbjct  571   TPGTNASSEVAVLYQDVNCTDVPTSIHADQLTPAWRVYSTGVNVFQTQAGCLIGAEHVNA  630

Query  659   SYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNF  718
             SYECDIPIGAGICASY T +      RS   +SI+AYTMSLGAENS+AY+NNSIAIPTNF
Sbjct  631   SYECDIPIGAGICASYHTASV----LRSTGQKSIVAYTMSLGAENSIAYANNSIAIPTNF  686

Query  719   TISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNT  778
             +ISVTTE++PVS+ KTSVDCTMYICGDS ECSNLLLQYGSFCTQLNRALTGIA+EQDKNT
Sbjct  687   SISVTTEVMPVSIAKTSVDCTMYICGDSLECSNLLLQYGSFCTQLNRALTGIAIEQDKNT  746

Query  779   QEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYG  838
             QEVFAQVKQ+YKTP IKDFGGFNFSQILPDPSKP+KRSFIEDLLFNKVTLADAGF+KQYG
Sbjct  747   QEVFAQVKQMYKTPAIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLADAGFMKQYG  806

Query  839   DCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPF  898
             +CLGDI+ARDLICAQKFNGLTVLPPLLTDEMIA YT+AL++GT T+GWTFGAG+ALQIPF
Sbjct  807   ECLGDISARDLICAQKFNGLTVLPPLLTDEMIAAYTAALVSGTATAGWTFGAGSALQIPF  866

Query  899   AMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQA  958
             AMQMAYRFNGIGVTQNVLYENQK IANQFN AI +IQ+SL++T++ALGKLQDVVN NAQA
Sbjct  867   AMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNDNAQA  926

Query  959   LNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEI  1018
             LNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEI
Sbjct  927   LNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEI  986

Query  1019  RASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTA  1078
             RASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQ+APHGVVFLHVTYVP+QE+NFTTA
Sbjct  987   RASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTA  1046

Query  1079  PAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVY  1138
             PAICH+GKA+FPREGVFVSNGT WF+TQRNFY PQIITTDNTFV+GNCDVVIGI+NNTVY
Sbjct  1047  PAICHEGKAYFPREGVFVSNGTSWFITQRNFYSPQIITTDNTFVAGNCDVVIGIINNTVY  1106

Query  1139  DPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLI  1198
             DPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLI
Sbjct  1107  DPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLI  1166

Query  1199  DLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDE  1258
             DLQELGKYEQYIKWPWY+WLGFIAGLIAIVMVTI+LCCMTSCCSCLKG CSCGSCCKFDE
Sbjct  1167  DLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDE  1226

Query  1259  DDSEPVLKGVKLHYT  1273
             DDSEPVLKGVKLHYT
Sbjct  1227  DDSEPVLKGVKLHYT  1241


>sp|P11225|SPIKE_CVMJH Spike glycoprotein OS=Murine coronavirus 
(strain JHM) OX=11144 GN=S PE=1 SV=1
Length=1235

 Score = 1317 bits (3408),  Expect = 0.0, Method: Composition-based stats.
 Identities = 407/1336 (30%), Positives = 615/1336 (46%), Gaps = 169/1336 (13%)

Query  1     MFVFLVLLP--------LVSSQCVNLTTRTQLPPAYTN-----SFTRGVYYP-DKVFRSS  46
             +FVF++LLP            Q VN        P+ +      S  RG YY  D+V+ ++
Sbjct  2     LFVFILLLPSCLGYIGDFRCIQTVNYNGNNASAPSISTEAVDVSKGRGTYYVLDRVYLNA  61

Query  47    VLHSTQDLFLPFFSNVTWFHAIHVSGTN--GTKRFDNPVL-PFNDGVYF-----------  92
              L  T   + P   + + +  + ++GTN      F  P L  FNDG++            
Sbjct  62    TLLLTG--YYPV--DGSNYRNLALTGTNTLSLTWFKPPFLSEFNDGIFAKVQNLKTNTPT  117

Query  93    -ASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKS  151
              A++    I+ G +FG T  S T  L   NN   ++  VC +  C  P+     + N   
Sbjct  118   GATSYFPTIVIGSLFGNT--SYTVVLEPYNNI--IMASVCTYTICQLPYTPCKPNTNGNR  173

Query  152   -----WMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSK  206
                    + +  +     N TF  V+ P+L               F F    G F  Y  
Sbjct  174   VIGFWHTDVKPPICLLKRNFTFN-VNAPWLY--------------FHFYQQGGTFYAYYA  218

Query  207   HTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYY  266
               P           SA   L  + IG  +T++  L  +     TP    +  +  A  Y+
Sbjct  219   DKP-----------SATTFLFSVYIGDILTQYFVLPFI----CTP----TAGSTLAPLYW  259

Query  267   VGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI  326
             V  L  R +L  +NE G IT AVDCA   +SE KC  +S     G+Y  S + VQP   +
Sbjct  260   VTPLLKRQYLFNFNEKGVITSAVDCASSYISEIKCKTQSLLPSTGVYDLSGYTVQPVGVV  319

Query  327   VR-FPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPT  385
              R  PN+ + C   E   A    S   W R+   NC  + S L       +  C  +  +
Sbjct  320   YRRVPNLPD-CKIEEWLTAKSVPSPLNWERRTFQNCNFNLSSLLRYVQAESLSCNNIDAS  378

Query  386   KLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKV  445
             K+  +CF +V  D F I       +  G +G +   NYK+    T C +           
Sbjct  379   KVYGMCFGSVSVDKFAIPRSRQIDLQIGNSGFLQTANYKIDTAATSCQL-----------  427

Query  446   GGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGY  505
                    Y    K+N+                     +  +N     + YGF+  +    
Sbjct  428   -------YYSLPKNNVT--------------------INNYNPSSWNRRYGFKVND----  456

Query  506   QPYRVVVLSFELLHA--PATVCGPK---KSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL  560
                R  + +  LL+     T C       +T +    CV ++  G+TG GV  E    + 
Sbjct  457   ---RCQIFANILLNGINSGTTCSTDLQLPNTEVATGVCVRYDLYGITGQGVFKEVKADYY  513

Query  561   -PFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTE  619
               +Q    D+    +  RD  T +   I  C  G VS        + + A+LY+++NC+ 
Sbjct  514   NSWQALLYDVNGNLNGFRDLTTNKTYTIRSCYSGRVSAAYH--KEAPEPALLYRNINCSY  571

Query  620   VPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY--ECDIPIGAGICASYQTQ  677
             V     + +  P         N F +  GC++ A++  +     C++ +GAG+C  Y   
Sbjct  572   VFTNNISREENPL--------NYFDSYLGCVVNADNRTDEALPNCNLRMGAGLCVDYSKS  623

Query  678   TNSPRRARSVASQSIIAYTMSLGAENSVAYSNN--SIAIPTNFTISVTTEILPVSMTKTS  735
               + R   +    +     M +   +SV        + IPTNFTI    E + +   K +
Sbjct  624   RRARRSVSTGYRLTTFEPYMPMLVNDSVQSVGGLYEMQIPTNFTIGHHEEFIQIRAPKVT  683

Query  736   VDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQ-IYKTPPI  794
             +DC  ++CGD+  C   L++YGSFC  +N  L  +    D    +V + + Q +  +  +
Sbjct  684   IDCAAFVCGDNAACRQQLVEYGSFCDNVNAILNEVNNLLDNMQLQVASALMQGVTISSRL  743

Query  795   KD-----FGGFNFSQILP-----------DPSKPSKRSFIEDLLFNKVTLADAGFIKQYG  838
              D         NFS +L             PS    RS IEDLLF+KV L+D GF++ Y 
Sbjct  744   PDGISGPIDDINFSPLLGCIGSTCAEDGNGPSAIRGRSAIEDLLFDKVKLSDVGFVEAYN  803

Query  839   DCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPF  898
             +C G    RDL+C Q FNG+ VLPP+L++  I+ YT+   A  +   WT  AG    +PF
Sbjct  804   NCTGGQEVRDLLCVQSFNGIKVLPPVLSESQISGYTAGATAAAMFPPWTAAAG----VPF  859

Query  899   AMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQA  958
             ++ + YR NG+GVT NVL ENQK+IA+ FN+A+G IQ+   +T SALGK+Q VVN NA+A
Sbjct  860   SLNVQYRINGLGVTMNVLSENQKMIASAFNNALGAIQEGFDATNSALGKIQSVVNANAEA  919

Query  959   LNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEI  1018
             LN L+ QLS+ FGAIS+ L +IL+RLD VEA+ QIDRLI GRL +L  Y+++QL  +  I
Sbjct  920   LNNLLNQLSNRFGAISASLQEILTRLDAVEAKAQIDRLINGRLTALNAYISKQLSDSTLI  979

Query  1019  RASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTA  1078
             + SA  A  K++ECV  Q+ R++FCG G H++S  Q+AP+G+ F+H +YVP   K    +
Sbjct  980   KFSAAQAIEKVNECVKSQTTRINFCGNGNHILSLVQNAPYGLCFIHFSYVPTSFKTANVS  1039

Query  1079  PAICHDG-KAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTV  1137
             P +C  G +   P+ G FV +   W  T  N+Y P+ IT  N+    +C V         
Sbjct  1040  PGLCISGDRGLAPKAGYFVQDNGEWKFTGSNYYYPEPITDKNSVAMISCAVNYTKAPEVF  1099

Query  1138  YDPLQPELDSFKEELDKYFKNHTSPDVDLG-DISGINASVVNIQKEIDRLNEVAKNLNES  1196
              +   P L  FKEELDK+FKN TS   DL  D   +N + +++  E++R+ +  K LNES
Sbjct  1100  LNNSIPNLPDFKEELDKWFKNQTSIAPDLSLDFEKLNVTFLDLTYEMNRIQDAIKKLNES  1159

Query  1197  LIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCK-  1255
              I+L+E+G YE Y+KWPWY+WL  + GL  + +  ++                CGSCC  
Sbjct  1160  YINLKEVGTYEMYVKWPWYVWL--LIGLAGVAVCVLLFFICCCTGCGSCCFRKCGSCCDE  1217

Query  1256  FDEDDSEPVLKGVKLH  1271
             +       V+  +  H
Sbjct  1218  YGGHQDSIVIHNISAH  1233


>sp|P11224|SPIKE_CVMA5 Spike glycoprotein OS=Murine coronavirus 
(strain A59) OX=11142 GN=S PE=1 SV=2
Length=1324

 Score = 1273 bits (3295),  Expect = 0.0, Method: Composition-based stats.
 Identities = 395/1379 (29%), Positives = 610/1379 (44%), Gaps = 166/1379 (12%)

Query  1     MFVFLVLLP--------LVSSQCVNLTTRTQLPPAYTN-----SFTRGVYYP-DKVFRSS  46
             +FVF++ LP            Q VN        P+ +      S   G YY  D+V+ ++
Sbjct  2     LFVFILFLPSCLGYIGDFRCIQLVNSNGANVSAPSISTETVEVSQGLGTYYVLDRVYLNA  61

Query  47    VLHSTQDLFLPFFSNVTWFHAIHVSGTNG--TKRFDNPVL-PFNDGVYF-----------  92
              L  T   + P   + + F  + + GTN      F  P L  FNDG++            
Sbjct  62    TLLLTG--YYPV--DGSKFRNLALRGTNSVSLSWFQPPYLNQFNDGIFAKVQNLKTSTPS  117

Query  93    -ASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKS  151
              A+     I+ G +FG T  S T  +   N    ++  VC++  C  P+     + N   
Sbjct  118   GATAYFPTIVIGSLFGYT--SYTVVIEPYNGV--IMASVCQYTICQLPYTDCKPNTNGNK  173

Query  152   W-----MESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSK  206
                    + +  +     N T    +  F                F F    G F  Y  
Sbjct  174   LIGFWHTDVKPPICVLKRNFTLNVNADAF---------------YFHFYQHGGTFYAYYA  218

Query  207   HTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYY  266
               P           SA   L  + IG  +T++  L  +      P    +  +  A  Y+
Sbjct  219   DKP-----------SATTFLFSVYIGDILTQYYVLPFI----CNP----TAGSTFAPRYW  259

Query  267   VGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI  326
             V  L  R +L  +N+ G IT AVDCA    SE KC  +S     G+Y+ S + VQP   +
Sbjct  260   VTPLVKRQYLFNFNQKGVITSAVDCASSYTSEIKCKTQSMLPSTGVYELSGYTVQPVGVV  319

Query  327   VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTK  386
              R       C   E   A    S   W RK   NC  + S L       +  C  +  +K
Sbjct  320   YRRVANLPACNIEEWLTARSVPSPLNWERKTFQNCNFNLSSLLRYVQAESLFCNNIDASK  379

Query  387   LNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWN-SNNLDSKV  445
             +   CF ++  D F +       +  G +G +   NYK+    T C + +    N  +  
Sbjct  380   VYGRCFGSISVDKFAVPRSRQVDLQLGNSGFLQTANYKIDTAATSCQLHYTLPKNNVTIN  439

Query  446   GGNYNYLYRLFRKSNLKPFERDISTEIY-------QAGSTPC-NGVEGFNCYFPLQSYGF  497
               N +   R +  ++   F ++    +Y       ++   PC        C    +    
Sbjct  440   NHNPSSWNRRYGFNDAGVFGKNQHDVVYAQQCFTVRSSYCPCAQPDIVSPCTTQTKPKSA  499

Query  498   QPTNGVGYQPY-----------------------------------RVVVLSFELLHA--  520
                 G   +                                     R  + +  LL+   
Sbjct  500   FVNVGDHCEGLGVLEDNCGNADPHKGCICANNSFIGWSHDTCLVNDRCQIFANILLNGIN  559

Query  521   PATVCGPK---KSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAV  576
               T C       +T +V   CV ++  G+TG GV  E    +   +Q    D+    +  
Sbjct  560   SGTTCSTDLQLPNTEVVTGICVKYDLYGITGQGVFKEVKADYYNSWQTLLYDVNGNLNGF  619

Query  577   RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVY  636
             RD  T +   I  C  G VS        + + A+LY+++NC+ V     + +  P     
Sbjct  620   RDLTTNKTYTIRSCYSGRVSAAFH--KDAPEPALLYRNINCSYVFSNNISREENPL----  673

Query  637   STGSNVFQTRAGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIA  694
                 N F +  GC++ A++  +     CD+ +GAG+C  Y     + R   +    +   
Sbjct  674   ----NYFDSYLGCVVNADNRTDEALPNCDLRMGAGLCVDYSKSRRAHRSVSTGYRLTTFE  729

Query  695   YTMSLGAENSVAYSNN--SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNL  752
                 +   +SV   +    + IPTNFTI    E +     K ++DC  ++CGD+T C   
Sbjct  730   PYTPMLVNDSVQSVDGLYEMQIPTNFTIGHHEEFIQTRSPKVTIDCAAFVCGDNTACRQQ  789

Query  753   LLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQ-IYKTPPIKD-----FGGFNFSQIL  806
             L++YGSFC  +N  L  +    D    +V + + Q +  +  + D         NFS +L
Sbjct  790   LVEYGSFCVNVNAILNEVNNLLDNMQLQVASALMQGVTISSRLPDGISGPIDDINFSPLL  849

Query  807   P-----------DPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKF  855
                          PS    RS IEDLLF+KV L+D GF++ Y +C G    RDL+C Q F
Sbjct  850   GCIGSTCAEDGNGPSAIRGRSAIEDLLFDKVKLSDVGFVEAYNNCTGGQEVRDLLCVQSF  909

Query  856   NGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNV  915
             NG+ VLPP+L++  I+ YT+   A  +   W+  AG    +PF++ + YR NG+GVT NV
Sbjct  910   NGIKVLPPVLSESQISGYTTGATAAAMFPPWSAAAG----VPFSLSVQYRINGLGVTMNV  965

Query  916   LYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISS  975
             L ENQK+IA+ FN+A+G IQD   +T SALGK+Q VVN NA+ALN L+ QLS+ FGAIS+
Sbjct  966   LSENQKMIASAFNNALGAIQDGFDATNSALGKIQSVVNANAEALNNLLNQLSNRFGAISA  1025

Query  976   VLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG  1035
              L +IL+RL+ VEA+ QIDRLI GRL +L  Y+++QL  +  I+ SA  A  K++ECV  
Sbjct  1026  SLQEILTRLEAVEAKAQIDRLINGRLTALNAYISKQLSDSTLIKVSAAQAIEKVNECVKS  1085

Query  1036  QSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGV  1094
             Q+ R++FCG G H++S  Q+AP+G+ F+H +YVP        +P +C  G +   P+ G 
Sbjct  1086  QTTRINFCGNGNHILSLVQNAPYGLYFIHFSYVPISFTTANVSPGLCISGDRGLAPKAGY  1145

Query  1095  FVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDK  1154
             FV +   W  T  ++Y P+ IT  N+ +  +C V          +   P    FKEELDK
Sbjct  1146  FVQDDGEWKFTGSSYYYPEPITDKNSVIMSSCAVNYTKAPEVFLNTSIPNPPDFKEELDK  1205

Query  1155  YFKNHTSPDVDLG-DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWP  1213
             +FKN TS   DL  D   +N +++++  E++R+ +  K LNES I+L+E+G YE Y+KWP
Sbjct  1206  WFKNQTSIAPDLSLDFEKLNVTLLDLTYEMNRIQDAIKKLNESYINLKEVGTYEMYVKWP  1265

Query  1214  WYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCK-FDEDDSEPVLKGVKLH  1271
             WY+WL  + GL  + +  ++                CG+CC  +       V+  +  H
Sbjct  1266  WYVWL--LIGLAGVAVCVLLFFICCCTGCGSCCFKKCGNCCDEYGGHQDSIVIHNISSH  1322


>sp|A3EXG6|SPIKE_BCHK9 Spike glycoprotein OS=Bat coronavirus HKU9 
OX=694006 GN=S PE=1 SV=1
Length=1274

 Score = 1200 bits (3105),  Expect = 0.0, Method: Composition-based stats.
 Identities = 417/1287 (32%), Positives = 646/1287 (50%), Gaps = 106/1287 (8%)

Query  29    TNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFH-AIHVSGTNGTKRFDNPVLPFN  87
               +    V  PD     S     Q+LF+   SN   +      +G NG   ++  ++P +
Sbjct  38    IKAKVSNVLLPDPYIAYSGQTLRQNLFMADMSNTILYPVTPPANGANGGFIYNTSIIPVS  97

Query  88    DGVYF---------ASTEKSNIIRGWIFGTTLDSKTQSLLIV-------------NNATN  125
              G++          +S        G  FG T ++   ++LI+              N TN
Sbjct  98    AGLFVNTWMYRQPASSRAYCQEPFGVAFGDTFENDRIAILIMAPDNLGSWSAVAPRNQTN  157

Query  126   VVIKVC-EFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQG  184
             + + VC     C +P  G        S++  +  V   +N+C   +V+  F +++   + 
Sbjct  158   IYLLVCSNATLCINP--GFNRWGPAGSFIAPDALV-DHSNSC---FVNNTFSVNISTSRI  211

Query  185   NFKNLREFVFKNIDGYFKIY-SKHTPI-NLVRDLPQGFSALEPLVDLPIGINITRFQTLL  242
             +      F+FK  DG   IY S   P  N      +G   +   + LP+G N+ R Q   
Sbjct  212   SLA----FLFK--DGDLLIYHSGWLPTSNFEHGFSRGSHPMTYFMSLPVGGNLPRAQFFQ  265

Query  243   ALHRS-YLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKC  301
             ++ RS  +  GD     T      +V +L  R  L+ Y  NG++ +A DCA     E  C
Sbjct  266   SIVRSNAIDKGDGMC--TNFDVNLHVAHLINRDLLVSYFNNGSVANAADCADSAAEELYC  323

Query  302   TLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLC--PFGEVFNATRFASVYAWNRKRIS  359
                SF    G+Y  S +R Q     VR     + C  P+  + +         W R  + 
Sbjct  324   VTGSFDPPTGVYPLSRYRAQ-VAGFVRVTQRGSYCTPPYSVLQDP---PQPVVWRRYMLY  379

Query  360   NCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIA  419
             +CV D++V+ +S      +CYGVSP +L  +C+ +V  D   I    +  +        +
Sbjct  380   DCVFDFTVVVDSLPTHQLQCYGVSPRRLASMCYGSVTLDVMRINETHLNNLFNRVPDTFS  439

Query  420   DYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTP  479
              YNY LPD+F GC+ A+  N+            Y +  +  +KP  R       Q+ S  
Sbjct  440   LYNYALPDNFYGCLHAFYLNSTAP---------YAVANRFPIKPGGR-------QSNSAF  483

Query  480   CNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCV  539
              + V     Y P                Y + V++ +       VC     T ++ ++CV
Sbjct  484   IDTVINAAHYSPFSY------------VYGLAVITLKPAAGSKLVCPVANDTVVITDRCV  531

Query  540   NFNFNGLTGTGVLTESNKKFLP-FQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVI  598
              +N  G TGTGVL+++    +P  + F      T   V    T     I PC    VSV 
Sbjct  532   QYNLYGYTGTGVLSKNTSLVIPDGKVFTASSTGTIIGVSINST--TYSIMPCVTVPVSV-  588

Query  599   TPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNN  658
               G + + + A+L+  ++C++   A+  + ++  W   +T  + F T +GC++  E  N 
Sbjct  589   --GYHPNFERALLFNGLSCSQRSRAV-TEPVSVLWSASATAQDAFDTPSGCVVNVELRNT  645

Query  659   SY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSI---A  713
             +    C +PIG  +C  +   + +   A S+    ++ Y      +NS A     +    
Sbjct  646   TIVNTCAMPIGNSLC--FINGSIATANADSLPRLQLVNYDPLY--DNSTATPMTPVYWVK  701

Query  714   IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVE  773
             +PTNFT+S T E +  +  K ++DC  Y+CGDS+ C N+LL YG+FC  +N+AL+ ++  
Sbjct  702   VPTNFTLSATEEYIQTTAPKITIDCARYLCGDSSRCLNVLLHYGTFCNDINKALSRVSTI  761

Query  774   QDKNTQEVFAQVKQIYKTPPIKDF---GGFNFSQIL----PDPSKPSKRSFIEDLLFNKV  826
              D     +  ++  I     +  F   G +NF+ ++    P+    + RS   DLL++KV
Sbjct  762   LDSALLSLVKELS-INTRDEVTTFSFDGDYNFTGLMGCLGPNCGATTYRSAFSDLLYDKV  820

Query  827   TLADAGFIKQYGDCLG---DIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTIT  883
              + D GF++ Y  C+      + RDL+C Q +NG+ VLPP+++  M A YTS L+    +
Sbjct  821   RITDPGFMQSYQKCIDSQWGGSIRDLLCTQTYNGIAVLPPIVSPAMQALYTSLLVGAVAS  880

Query  884   SGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTAS  943
             SG+TFG  +A  IPFA Q+ +R NGIGVT  VL ENQKLIA+ FN+A+  IQ   + T+ 
Sbjct  881   SGYTFGITSAGVIPFATQLQFRLNGIGVTTQVLVENQKLIASSFNNALVNIQKGFTETSI  940

Query  944   ALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQS  1003
             AL K+QDV+NQ+A  L+TLV QL ++FGAISS +N+I SRL+ + A  ++DRLI GR+  
Sbjct  941   ALSKMQDVINQHAAQLHTLVVQLGNSFGAISSSINEIFSRLEGLAANAEVDRLINGRMMV  1000

Query  1004  LQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFL  1063
             L TYVTQ LI+A+E +A   LAA K+SECV  QS R DFCG G H++S PQ AP+GV+F+
Sbjct  1001  LNTYVTQLLIQASEAKAQNALAAQKISECVKAQSLRNDFCGNGTHVLSIPQLAPNGVLFI  1060

Query  1064  HVTYVPAQEKNFTTAPAICHDGKAHFPREGVFV--SNGTHWFVTQRNFYEPQIITTDNTF  1121
             H  Y P +     T+  +CH+G  + PR+G+FV  +N   W  T   FY P  I+  NT 
Sbjct  1061  HYAYTPTEYAFVQTSAGLCHNGTGYAPRQGMFVLPNNTNMWHFTTMQFYNPVNISASNTQ  1120

Query  1122  VSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQK  1181
             V  +C V    VN TV +P  P    F++E DK++KN ++   +  + +  N S V++  
Sbjct  1121  VLTSCSVNYTSVNYTVLEPSVPGDYDFQKEFDKFYKNLSTIFNNTFNPNDFNFSTVDVTA  1180

Query  1182  EIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCC  1241
             +I  L++V   LN+S IDL++L  YE+ IKWPWY+WL  IAG++ +V+  IML CMT+CC
Sbjct  1181  QIKSLHDVVNQLNQSFIDLKKLNVYEKTIKWPWYVWLAMIAGIVGLVLAVIMLMCMTNCC  1240

Query  1242  SCLKGCCSCGSCC-KFDE-DDSEPVLK  1266
             SC KG C C  CC  +D  DD  P ++
Sbjct  1241  SCFKGMCDCRRCCGSYDSYDDVYPAVR  1267


>sp|Q0Q4F2|SPIKE_BC133 Spike glycoprotein OS=Bat coronavirus 133/2005 
OX=389230 GN=S PE=3 SV=1
Length=1350

 Score = 1140 bits (2949),  Expect = 0.0, Method: Composition-based stats.
 Identities = 408/1286 (32%), Positives = 615/1286 (48%), Gaps = 92/1286 (7%)

Query  43    FRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIR  102
             +  SV H+  +   P  + ++ +  +     NG              +  + +  + I +
Sbjct  90    YLYSVSHAVGNDGDPTKAYISNYSLLVNDFDNGFVVRIGAAANSTGTIVISPSVNTKIKK  149

Query  103   GW---IFGTTLDSKTQSLLIVNNATNVVI-----KVCEFQFCNDPFLGVYYHKNNKSWME  154
              +   I G++L + +    +  N +  +I      V    +C           +   +  
Sbjct  150   AYPAFILGSSLTNTSAGKPLYANYSLTIIPDGCGTVLHAFYCILKPRTGNRCPSGSDYNA  209

Query  155   SEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVR  214
               + +Y + ++     +++   ++      +F +L    F N               + +
Sbjct  210   --YFIYETIHSDCQSTINRNASLN---SFKSFFDLVNCTFFNS-WDITADETKEWFGITQ  263

Query  215   DLPQGFSALEPLVDLPIGINITRFQTLLA---------LHRSYLTPGDSSSGWTAGAAAY  265
             D  QG            G N+ RF TL           + RS+ +  +    W    AA+
Sbjct  264   D-TQGVHLHSSRKGDLYGGNMFRFATLPVYEGIKYYTVIPRSFRSKANKREAW----AAF  318

Query  266   YVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTES  325
             YV  L   T+LL ++ +G I  A+DC  D LS+  C+  SF V+ G+Y  S++    T +
Sbjct  319   YVYKLHQLTYLLDFSVDGYIRRAIDCGHDDLSQLHCSYTSFEVDTGVYSVSSYEASATGT  378

Query  326   IVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPT  385
              +  PN+T  C F  +        VY + R   SNC  + + L +  +   F C G+SP 
Sbjct  379   FIEQPNVTE-CDFSPMLTGVA-PQVYNFKRLVFSNCNYNLTKLLSLFAVDEFSCNGISPD  436

Query  386   KLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGC-VIAWNSNNLDSK  444
              +   C++ +  D F         I PG  G I  YNYK       C V+A   +N+   
Sbjct  437   AIARGCYSTLTVDYFAYPLSMKSYIRPGSAGNIPLYNYKQSFANPTCRVMASVPDNVTIT  496

Query  445   VGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNC--YFPL----------  492
               G Y Y+ +  R   L    +DI T +Y       N  E   C  + PL          
Sbjct  497   KPGAYGYISKCSR---LTGVNQDIETPLY------INPGEYSICRDFAPLGFSEDGQVFK  547

Query  493   ----QSYGFQPTNGVGY------QPYRVVVLSFELLHAPATVCGPKKSTNLVK-----NK  537
                 Q  G     GVG             V+S +      +VC      + +       K
Sbjct  548   RTLTQFEGGGLLIGVGTRVPMTANLEMGFVISVQYGTGTDSVCPMLDLGDSLTITNRLGK  607

Query  538   CVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSV  597
             CV+++  G+TG GV        +  Q+F  D  D               + PC    VSV
Sbjct  608   CVDYSLYGVTGRGVFQNCTAVGVKQQRFVYDSFDNLVGYYSDDGN-YYCVRPCVSVPVSV  666

Query  598   ITPGTNTSNQVAVLYQDVNCTEVPVAIHA-DQLTPTWRVYSTGSNVFQTRAGCLIGAEHV  656
             I     ++N  A L+  V C  V   +    +LT +       +   QT  GC+IG  + 
Sbjct  667   IYD--KSTNLHATLFGSVACEHVTTMMSQFSRLTQSNLRRRDSNTPLQTAVGCVIGLSNN  724

Query  657   N-NSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIP  715
             +    +C +P+G  +CA           A S    +++ YT  +     +  S  + AIP
Sbjct  725   SLVVSDCKLPLGQSLCAVPPVSMFRSYSA-SQFQLAVLNYTSPI-VVTPINSSGFTAAIP  782

Query  716   TNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQD  775
             TNF+ S+T E +  S+ K +VDC  Y+C   T C  LL++YG FC+++N+AL G  + QD
Sbjct  783   TNFSFSLTQEYIETSIQKVTVDCKQYVCNGFTRCEKLLVEYGQFCSKINQALHGANLRQD  842

Query  776   KNTQEVFAQVKQI-YKTPPIKDFGGFNFSQI-LPDPSKPSKRSFIEDLLFNKVTLADAGF  833
             ++   +++ +K    +T      G FN + + +P     S RS IEDLLF+KVT+AD G+
Sbjct  843   ESVYSLYSNIKTTSTQTLEYGLNGDFNLTLLQVPQIGGSSYRSAIEDLLFDKVTIADPGY  902

Query  834   IKQYGDCL--GDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAG  891
             ++ Y DC+  G  +ARDLICAQ  +G  VLPPL    M A YTS+LL     +GWT G  
Sbjct  903   MQGYDDCMKQGPQSARDLICAQYVSGYKVLPPLYDPNMEAAYTSSLLGSIAGAGWTAGLS  962

Query  892   AALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDV  951
             +   IPFA  M YR NG+G+TQ VL ENQKLIAN+FN A+G +Q   +++  A  K+QD 
Sbjct  963   SFAAIPFAQSMFYRLNGVGITQQVLSENQKLIANKFNQALGAMQTGFTTSNLAFSKVQDA  1022

Query  952   VNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQ  1011
             VN NAQAL+ L  +LS+ FGAISS ++DIL+RLD VE + QIDRLI GRL SL  +V+QQ
Sbjct  1023  VNANAQALSKLASELSNTFGAISSSISDILARLDTVEQDAQIDRLINGRLTSLNAFVSQQ  1082

Query  1012  LIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQ  1071
             L+R+     SA LA+ K++ECV  QSKR  FCG G H++SF  +AP+G  F HV YVP  
Sbjct  1083  LVRSETAARSAQLASDKVNECVKSQSKRNGFCGSGTHIVSFVVNAPNGFYFFHVGYVPTN  1142

Query  1072  EKNFTTAPAICHDGKA---HFPREGVFVSN-------GTHWFVTQRNFYEPQIITTDNTF  1121
               N T A  +C+         P +G F++N        T W+ T  +F++P+ IT  N+ 
Sbjct  1143  YTNVTAAYGLCNHNNPPLCIAPIDGYFITNQTTTYSVDTEWYYTGSSFFKPEPITQANSR  1202

Query  1122  VSGNCDVVIGIVNNTVYDPLQPE--LDSFKEELDKYFKNHTSPDVDLGDISGINASVVNI  1179
                + DV    + N +  PL        FK+EL+++FKN TS   +  +IS IN +++++
Sbjct  1203  YVSS-DVKFEKLENNLPPPLLENSTDVDFKDELEEFFKNVTSHGPNFAEISKINTTLLDL  1261

Query  1180  QKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTS  1239
               E+  L EV K LN+S IDL+ELG Y  Y KWPWYIWLGFIAGL+A+++    L C T 
Sbjct  1262  SDEMAILQEVVKQLNDSYIDLKELGNYTYYNKWPWYIWLGFIAGLVALLLCVFFLLCCTG  1321

Query  1240  CCSCLKGCCSCGSCCK-FDEDDSEPV  1264
             C +   G   C +CC  ++E D E +
Sbjct  1322  CGTSCLGKMKCKNCCDSYEEYDVEKI  1347


>sp|P25191|SPIKE_CVBL9 Spike glycoprotein OS=Bovine coronavirus 
(strain L9) OX=11130 GN=S PE=1 SV=1
Length=1363

 Score = 1138 bits (2944),  Expect = 0.0, Method: Composition-based stats.
 Identities = 383/1409 (27%), Positives = 604/1409 (43%), Gaps = 197/1409 (14%)

Query  2     FVFLVLLPLVSSQCVNLTTRTQL-------PPAYTN-----SFTRGVYYP-DKVFRSSVL  48
              + L+ LP+  +   +L   T          P+ +      +   G YY  D+V+ ++ L
Sbjct  3     LILLISLPMAFAVIGDLKCTTVSINDVDTGAPSISTDIVDVTNGLGTYYVLDRVYLNTTL  62

Query  49    HSTQDLFLPFFSNVTWFHAIHVSGTN--GTKRFDNPVL-PFNDGVYFASTEKSNIIRGWI  105
                   + P  ++ + +  + + GT       F  P L  F +G+ FA  + + +I+  +
Sbjct  63    LLNG--YYP--TSGSTYRNMALKGTLLLSRLWFKPPFLSDFINGI-FAKVKNTKVIKKGV  117

Query  106   FGTTLDSKTQSLLIVNNATNVV-----------------IKVCEFQFCNDPFLGVYYHKN  148
               +   + T     VN + +VV                 I VC++  C  P      H N
Sbjct  118   MYSEFPAITIGSTFVNTSYSVVVQPHTTNLDNKLQGLLEISVCQYTMCEYPHT--ICHPN  175

Query  149   NKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHT  208
               +     +   +   +C ++   + F  D+            F F    G F  Y   T
Sbjct  176   LGNKRVELWHWDTGVVSCLYK---RNFTYDVNADYLY------FHFYQEGGTFYAYFTDT  226

Query  209   PINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVG  268
              +             + L ++ +G  ++ +         Y+ P   +S  T     Y+V 
Sbjct  227   GV-----------VTKFLFNVYLGTVLSHY---------YVLPLTCNSAMT---LEYWVT  263

Query  269   YLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVR  328
              L  + +LL +N++G I +AVDC  D +SE KC   S     G+Y+ + + VQP   + R
Sbjct  264   PLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELNGYTVQPIADVYR  323

Query  329   -FPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKL  387
               PN+ + C      N     S   W RK  SNC  + S L +     +F C  +   K+
Sbjct  324   RIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCNFNMSCLMSFIQADSFTCNNIDAAKI  382

Query  388   NDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSN----NLDS  443
               +CF+++  D F I       +  G  G +  +NY++    T C + +N      ++  
Sbjct  383   YGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTTATSCQLYYNLPAANVSVSR  442

Query  444   KVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQS---------  494
                  +N  +    +S  KP    + T      +  C       C   L           
Sbjct  443   FNPSTWNRRFGFTEQSVFKPQPVGVFTHHDVVYAQHCFKAPTNFCPCKLDGSLCVGNGPG  502

Query  495   -YGFQPTNGVGYQPYRV-------------------------------------------  510
                    +G+G  P                                              
Sbjct  503   IDAGYKNSGIGTCPAGTNYLTCHNAAQCDCLCTPDPITSKSTGPYKCPQTKYLVGIGEHC  562

Query  511   --VVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRD  568
               + +  +        C P+       + C+  +   +    +L + N          + 
Sbjct  563   SGLAIKSDYCGGNPCTCQPQAFLGWSVDSCLQGDRCNIFANFILHDVNSGTTCSTDLQKS  622

Query  569   IADTTDAVRDPQTLEILDIT----------PCSFGGVSVITPGTNT-------SNQVAVL  611
               D    V      ++  IT          P      +++                   +
Sbjct  623   NTDIILGV--CVNYDLYGITGQGIFVEVNAPYYNSWQNLLYDSNGNLYGFRDYLTNRTFM  680

Query  612   YQDVNCTEVPVAIHADQLTPTWRVYSTGSNV---------------FQTRAGCLIGAEHV  656
              +      V  A HA+   P     +   N                F +  GC++ A++ 
Sbjct  681   IRSCYSGRVSAAFHANSSEPALLFRNIKCNYVFNNTLSRQLQPINYFDSYLGCVVNADNS  740

Query  657   NNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNN----  710
              +S    CD+ +G+G C  Y T     RR+R   +             NSV  S      
Sbjct  741   TSSVVQTCDLTVGSGYCVDYST----KRRSRRAITTGYRFTNFEPFTVNSVNDSLEPVGG  796

Query  711   --SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALT  768
                I IP+ FTI    E +  S  K ++DC+ ++CGD   C + L++YGSFC  +N  LT
Sbjct  797   LYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGSFCDNINAILT  856

Query  769   GIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGF-----NFSQILP----DPSKPSKRSFI  818
              +    D    +V  + +  +  +  +KD   F     NFS +L     D +K S RS I
Sbjct  857   EVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSDCNKVSSRSAI  916

Query  819   EDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALL  878
             EDLLF+KV L+D GF++ Y +C G    RDLIC Q +NG+ VLPPLL+   I+ YT A  
Sbjct  917   EDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSVNQISGYTLAAT  976

Query  879   AGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSL  938
             + ++   W+  AG    +PF + + YR NGIGVT +VL +NQKLIAN FN+A+  IQ+  
Sbjct  977   SASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFNNALDAIQEGF  1032

Query  939   SSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLIT  998
              +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +EA+ QIDRLI 
Sbjct  1033  DATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALEAQAQIDRLIN  1092

Query  999   GRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPH  1058
             GRL +L  YV+QQL  +  ++ SA  A  K++ECV  QS R++FCG G H++S  Q+AP+
Sbjct  1093  GRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNHIISLVQNAPY  1152

Query  1059  GVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQRNFYEPQIITT  1117
             G+ F+H +YVP +      +P +C  G +   P+ G FV+    W  T   +Y P+ IT 
Sbjct  1153  GLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGSGYYYPEPITG  1212

Query  1118  DNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVV  1177
             +N  V   C        + + +   P L  FKEELD++FKN TS   DL  +  IN + +
Sbjct  1213  NNVVVMSTCAANYTKAPDVMLNISTPNLHDFKEELDQWFKNQTSVAPDL-SLDYINVTFL  1271

Query  1178  NIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCM  1237
             ++Q E++RL E  K LN+S I+L+++G YE Y+KWPWY+WL  + G   + M+ ++    
Sbjct  1272  DLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGVAMLVLLFFIC  1329

Query  1238  TSCCSCLKGCCSCGSCCKFDEDDSEPVLK  1266
                         CG CC       E V+K
Sbjct  1330  CCTGCGTSCFKICGGCCDDYTGHQELVIK  1358


>sp|A3EXD0|SPIKE_BCHK5 Spike glycoprotein OS=Bat coronavirus HKU5 
OX=694008 GN=S PE=1 SV=1
Length=1352

 Score = 1129 bits (2921),  Expect = 0.0, Method: Composition-based stats.
 Identities = 402/1174 (34%), Positives = 576/1174 (49%), Gaps = 76/1174 (6%)

Query  132   EFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLRE  191
                  + P         N+      F+VY    NCTF Y        +       +N   
Sbjct  211   SLSLWDTPASDCVSGSYNQEATLGAFKVYFDLINCTFRY-----NYTITED----ENAEW  261

Query  192   FVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTP  251
             F          +YS         +       +     LP+   I  +     + RS  +P
Sbjct  262   FGITQDTQGVHLYSSRKENVFRNN-------MFHFATLPVYQKILYY---TVIPRSIRSP  311

Query  252   GDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKG  311
              +    W    AA+Y+  L P T+LL ++  G IT AVDC  D L++ +C+ +SF VE G
Sbjct  312   FNDRKAW----AAFYIYKLHPLTYLLNFDVEGYITKAVDCGYDDLAQLQCSYESFEVETG  367

Query  312   IYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNS  371
             +Y  S+F   P    +     T  C F  +   T    +Y + R   +NC  + + L + 
Sbjct  368   VYSVSSFEASPRGEFIEQA-TTQECDFTPMLTGTP-PPIYNFKRLVFTNCNYNLTKLLSL  425

Query  372   ASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTG  431
                S F C+ VSP+ L   C++++  D F    D    + PG  G I  +NYK       
Sbjct  426   FQVSEFSCHQVSPSSLATGCYSSLTVDYFAYSTDMSSYLQPGSAGAIVQFNYKQDFSNPT  485

Query  432   C-VIAWNSNNLDSKVGG-NYNYLYRLFRKSNLKPFERDISTEIYQA--GSTPCNGV--EG  485
             C V+A    NL +     NY YL   ++ S            +Y A    TPC  +   G
Sbjct  486   CRVLATVPQNLTTITKPSNYAYLTECYKTSAYG------KNYLYNAPGAYTPCLSLASRG  539

Query  486   FNCYFPLQSYGFQPTNGVGY----QPYRVVVLSFELLHAPATVCGPKKSTNLV-----KN  536
             F+  +   S G   T G  Y          ++S +      +VC  +   N        +
Sbjct  540   FSTKYQSHSDGELTTTGYIYPVTGNLQMAFIISVQYGTDTNSVCPMQALRNDTSIEDKLD  599

Query  537   KCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVS  596
              CV ++ +G+TG GV        L  Q+F  D  D               + PC    VS
Sbjct  600   VCVEYSLHGITGRGVFHNCTSVGLRNQRFVYDTFDNLVGYHSDNGN-YYCVRPCVSVPVS  658

Query  597   VITPGTNTSNQVAVLYQDVNCTEVPVAIHA-DQLTPTWRVYSTGSNVFQTRAGCLIGAEH  655
             VI      SN  A L+  V C+ V   +    ++T T  +  T     QT  GC +G  +
Sbjct  659   VIYD--KASNSHATLFGSVACSHVTTMMSQFSRMTKTNLLARTTPGPLQTTVGCAMGFIN  716

Query  656   VNNSYE-CDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNS---  711
              +   + C +P+G  +CA   T ++  RRA S AS      T++  +  ++A  N++   
Sbjct  717   SSMVVDECQLPLGQSLCAIPPTTSSRVRRATSGASDVFQIATLNFTSPLTLAPINSTGFV  776

Query  712   IAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIA  771
             +A+PTNFT  VT E +  ++ K +VDC  Y+C    +C +LL +YG FC+++N+AL G  
Sbjct  777   VAVPTNFTFGVTQEFIETTIQKITVDCKQYVCNGFKKCEDLLKEYGQFCSKINQALHGAN  836

Query  772   VEQDKNTQEVFAQVKQIYKTPPIKDF-GGFNFSQI-LPD--PSKPSKRSFIEDLLFNKVT  827
             + QD++   +F+ +K     P      G FN + + +P     +   RS IEDLLFNKVT
Sbjct  837   LRQDESIANLFSSIKTQNTQPLQAGLNGDFNLTMLQIPQVTTGERKYRSTIEDLLFNKVT  896

Query  828   LADAGFIKQYGDCL--GDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSG  885
             +AD G+++ Y +C+  G  +ARDLICAQ   G  VLPPL    M A YTS+LL     + 
Sbjct  897   IADPGYMQGYDECMQQGPQSARDLICAQYVAGYKVLPPLYDPYMEAAYTSSLLGSIAGAS  956

Query  886   WTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASAL  945
             WT G  +   IPFA  + YR NG+G+TQ VL ENQK+IAN+FN A+G +Q   ++T  A 
Sbjct  957   WTAGLSSFAAIPFAQSIFYRLNGVGITQQVLSENQKIIANKFNQALGAMQTGFTTTNLAF  1016

Query  946   GKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQ  1005
              K+QD VN NA AL+ L  +LS+ FGAISS ++DIL+RLD VE E QIDRLI GRL SL 
Sbjct  1017  NKVQDAVNANAMALSKLAAELSNTFGAISSSISDILARLDTVEQEAQIDRLINGRLTSLN  1076

Query  1006  TYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHV  1065
              +V QQL+R      SA LA  K++ECV  QSKR  FCG G H++SF  +AP+G+ F HV
Sbjct  1077  AFVAQQLVRTEAAARSAQLAQDKVNECVKSQSKRNGFCGTGTHIVSFAINAPNGLYFFHV  1136

Query  1066  TYVPAQEKNFTTAPAICHD---GKAHFPREGVFVSNGT---------HWFVTQRNFYEPQ  1113
              Y P    N T A  +C+     K   P +G FV N T          W+ T  +F+ P+
Sbjct  1137  GYQPTSHVNATAAYGLCNTENPQKCIAPIDGYFVLNQTTSTVADSDQQWYYTGSSFFHPE  1196

Query  1114  IITTDNTFVSGNCDVVIGIVNNTVYDPLQPE--LDSFKEELDKYFKNHTSPDVDLGDISG  1171
              IT  N+    + DV    + N +  PL        FKEEL+++FKN +S   +  +IS 
Sbjct  1197  PITEANSKYV-SMDVKFENLTNRLPPPLLSNSTDLDFKEELEEFFKNVSSQGPNFQEISK  1255

Query  1172  INASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVT  1231
             IN +++N+  E+  L+EV K LNES IDL+ELG Y  Y KWPWYIWLGFIAGL+A+ +  
Sbjct  1256  INTTLLNLNTELMVLSEVVKQLNESYIDLKELGNYTFYQKWPWYIWLGFIAGLVALALCV  1315

Query  1232  IMLCCMTSCCSCLKGCCSCGSCCK-FDEDDSEPV  1264
               + C T C +   G   C  CC  +DE + E +
Sbjct  1316  FFILCCTGCGTSCLGKLKCNRCCDSYDEYEVEKI  1349


>sp|A3EX94|SPIKE_BCHK4 Spike glycoprotein OS=Bat coronavirus HKU4 
OX=694007 GN=S PE=1 SV=1
Length=1352

 Score = 1129 bits (2921),  Expect = 0.0, Method: Composition-based stats.
 Identities = 407/1288 (32%), Positives = 611/1288 (47%), Gaps = 94/1288 (7%)

Query  43    FRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIR  102
             +  SV H+      P  + ++ +  +     NG              +  + +  + I +
Sbjct  90    YLYSVSHAVGHDGDPTKAYISNYSLLVNDFDNGFVVRIGAAANSTGTIVISPSVNTKIKK  149

Query  103   GW---IFGTTLDSKTQSLLIVNNATNVVI-----KVCEFQFCNDPFLGVYYHKNNKSWME  154
              +   I G++L + +    +  N +  +I      V    +C      V    +   ++ 
Sbjct  150   AYPAFILGSSLTNTSAGQPLYANYSLTIIPDGCGTVLHAFYCILKPRTVNRCPSGTGYVS  209

Query  155   SEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVR  214
               + +Y + +N     +++   ++      +F +L    F N               + +
Sbjct  210   --YFIYETVHNDCQSTINRNASLN---SFKSFFDLVNCTFFNS-WDITADETKEWFGITQ  263

Query  215   DLPQGFSALEPLVDLPIGINITRFQTLLA---------LHRSYLTPGDSSSGWTAGAAAY  265
             D  QG            G N+ RF TL           + RS+ +  +    W    AA+
Sbjct  264   D-TQGVHLYSSRKGDLYGGNMFRFATLPVYEGIKYYTVIPRSFRSKANKREAW----AAF  318

Query  266   YVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTES  325
             YV  L   T+LL ++ +G I  A+DC  D LS+  C+  SF V+ G+Y  S++    T +
Sbjct  319   YVYKLHQLTYLLDFSVDGYIRRAIDCGHDDLSQLHCSYTSFEVDTGVYSVSSYEASATGT  378

Query  326   IVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPT  385
              +  PN T  C F  +        VY + R   SNC  + + L +  +   F C G+SP 
Sbjct  379   FIEQPNATE-CDFSPMLTGVA-PQVYNFKRLVFSNCNYNLTKLLSLFAVDEFSCNGISPD  436

Query  386   KLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGC-VIAWNSNNLDSK  444
              +   C++ +  D F         I PG  G I  YNYK       C V+A    N+   
Sbjct  437   SIARGCYSTLTVDYFAYPLSMKSYIRPGSAGNIPLYNYKQSFANPTCRVMASVLANVTIT  496

Query  445   VGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCY---------------  489
                 Y Y+ +  R   L    +D+ T +Y       N  E   C                
Sbjct  497   KPHAYGYISKCSR---LTGANQDVETPLY------INPGEYSICRDFSPGGFSEDGQVFK  547

Query  490   -FPLQSYGFQPTNGVGY------QPYRVVVLSFELLHAPATVCGPKKSTNLVK-----NK  537
                 Q  G     GVG             ++S +      +VC      + +       K
Sbjct  548   RTLTQFEGGGLLIGVGTRVPMTDNLQMSFIISVQYGTGTDSVCPMLDLGDSLTITNRLGK  607

Query  538   CVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSV  597
             CV+++  G+TG GV        +  Q+F  D  D               + PC    VSV
Sbjct  608   CVDYSLYGVTGRGVFQNCTAVGVKQQRFVYDSFDNLVGYYSDDGN-YYCVRPCVSVPVSV  666

Query  598   ITPGTNTSNQVAVLYQDVNCTEVPVAIHA-DQLTPTWRVYSTGSNVFQTRAGCLIGAEHV  656
             I     ++N  A L+  V C  V   +    +LT +       +   QT  GC+IG  + 
Sbjct  667   IYD--KSTNLHATLFGSVACEHVTTMMSQFSRLTQSNLRRRDSNIPLQTAVGCVIGLSNN  724

Query  657   N-NSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIP  715
             +    +C +P+G  +CA     T     A S    +++ YT  +     +  S  + AIP
Sbjct  725   SLVVSDCKLPLGQSLCAVPPVSTFRSYSA-SQFQLAVLNYTSPI-VVTPINSSGFTAAIP  782

Query  716   TNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQD  775
             TNF+ SVT E +  S+ K +VDC  Y+C   T C  LL++YG FC+++N+AL G  + QD
Sbjct  783   TNFSFSVTQEYIETSIQKVTVDCKQYVCNGFTRCEKLLVEYGQFCSKINQALHGANLRQD  842

Query  776   KNTQEVFAQVKQI-YKTPPIKDFGGFNFSQILPDP---SKPSKRSFIEDLLFNKVTLADA  831
             ++   +++ +K    +T      G FN + +       S  S RS IEDLLF+KVT+AD 
Sbjct  843   ESVYSLYSNIKTTSTQTLEYGLNGDFNLTLLQVPQIGGSSSSYRSAIEDLLFDKVTIADP  902

Query  832   GFIKQYGDCL--GDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFG  889
             G+++ Y DC+  G  +ARDLICAQ  +G  VLPPL    M A YTS+LL     +GWT G
Sbjct  903   GYMQGYDDCMKQGPQSARDLICAQYVSGYKVLPPLYDPNMEAAYTSSLLGSIAGAGWTAG  962

Query  890   AGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQ  949
               +   IPFA  M YR NG+G+TQ VL ENQKLIAN+FN A+G +Q   +++  A  K+Q
Sbjct  963   LSSFAAIPFAQSMFYRLNGVGITQQVLSENQKLIANKFNQALGAMQTGFTTSNLAFSKVQ  1022

Query  950   DVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVT  1009
             D VN NAQAL+ L  +LS+ FGAISS ++DIL+RLD VE + QIDRLI GRL SL  +V+
Sbjct  1023  DAVNANAQALSKLASELSNTFGAISSSISDILARLDTVEQDAQIDRLINGRLISLNAFVS  1082

Query  1010  QQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVP  1069
             QQL+R+     SA LA+ K++ECV  QSKR  FCG G H++SF  +AP+G  F HV YVP
Sbjct  1083  QQLVRSETAARSAQLASDKVNECVKSQSKRNGFCGSGTHIVSFVVNAPNGFYFFHVGYVP  1142

Query  1070  AQEKNFTTAPAICHDGKA---HFPREGVFVSN-------GTHWFVTQRNFYEPQIITTDN  1119
                 N T A  +C++        P +G F++N        T W+ T  +FY+P+ IT  N
Sbjct  1143  TNYTNVTAAYGLCNNNNPPLCIAPIDGYFITNQTTTYSVDTEWYYTGSSFYKPEPITQAN  1202

Query  1120  TFVSGNCDVVIGIVNNTVYDPLQPE--LDSFKEELDKYFKNHTSPDVDLGDISGINASVV  1177
             +    + DV    + N +  PL        FK+EL+++FKN TS   +  +IS IN +++
Sbjct  1203  SRYVSS-DVKFDKLENNLPPPLLENSTDVDFKDELEEFFKNVTSHGPNFAEISKINTTLL  1261

Query  1178  NIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCM  1237
             ++  E+  L EV K LN+S IDL+ELG Y  Y KWPWY+WLGFIAGL+A+++    L C 
Sbjct  1262  DLSDEMAMLQEVVKQLNDSYIDLKELGNYTYYNKWPWYVWLGFIAGLVALLLCVFFLLCC  1321

Query  1238  TSCCSCLKGCCSCGSCCK-FDEDDSEPV  1264
             T C +   G   C +CC  ++E D E +
Sbjct  1322  TGCGTSCLGKMKCKNCCDSYEEYDVEKI  1349


>sp|K9N5Q8|SPIKE_MERS1 Spike glycoprotein OS=Middle East respiratory 
syndrome-related coronavirus (isolate United Kingdom/H123990006/2012) 
OX=1263720 GN=S PE=1 SV=1
Length=1353

 Score = 1110 bits (2871),  Expect = 0.0, Method: Composition-based stats.
 Identities = 398/1345 (30%), Positives = 610/1345 (45%), Gaps = 112/1345 (8%)

Query  8     LPLVSSQCVNLTTRTQL--PPAYTNSFTRGVYYP-DKVFRSSVLHSTQDL-FLPFFSNVT  63
             +     +     T      P     S   G+ YP  + + +  +       +     ++ 
Sbjct  26    VKSACIEVDIQQTFFDKTWPRPIDVSKADGIIYPQGRTYSNITITYQGLFPYQGDHGDMY  85

Query  64    WFHAIHVSGTNGTKRF----DNPVLPFNDG----VYFASTEKSNIIRGWIFGTT----LD  111
              + A H +GT   K F       V  F +G    +  A+     +I       T      
Sbjct  86    VYSAGHATGTTPQKLFVANYSQDVKQFANGFVVRIGAAANSTGTVIISPSTSATIRKIYP  145

Query  112   SKTQSLLIVNNATNVVIKVCEFQFCNDP------FLGVYY--------HKNNKSWMESEF  157
             +      + N +   + +         P          Y         H    +   S  
Sbjct  146   AFMLGSSVGNFSDGKMGRFFNHTLVLLPDGCGTLLRAFYCILEPRSGNHCPAGNSYTSFA  205

Query  158   RVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGY-FKIYSKHTPINLVRDL  216
               ++ A +C+    ++   ++   +  N +N       NI       +   T        
Sbjct  206   TYHTPATDCSDGNYNRNASLNSFKEYFNLRNCTFMYTYNITEDEILEWFGITQT------  259

Query  217   PQGFSALEPLVDLPIGINITRFQTLLA---------LHRSYLTPGDSSSGWTAGAAAYYV  267
              QG            G N+ +F TL           +  S  +       W    AA+YV
Sbjct  260   AQGVHLFSSRYVDLYGGNMFQFATLPVYDTIKYYSIIPHSIRSIQSDRKAW----AAFYV  315

Query  268   GYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIV  327
               LQP TFLL ++ +G I  A+DC  + LS+  C+ +SF VE G+Y  S+F  +P+ S+V
Sbjct  316   YKLQPLTFLLDFSVDGYIRRAIDCGFNDLSQLHCSYESFDVESGVYSVSSFEAKPSGSVV  375

Query  328   RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKL  387
                     C F  + + T    VY + R   +NC  + + L +  S + F C  +SP  +
Sbjct  376   EQAEGVE-CDFSPLLSGTP-PQVYNFKRLVFTNCNYNLTKLLSLFSVNDFTCSQISPAAI  433

Query  388   NDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCV-IAWNSNNLDSKVG  446
                C++++  D F         ++    G I+ +NYK       C+ +A   +NL +   
Sbjct  434   ASNCYSSLILDYFSYPLSMKSDLSVSSAGPISQFNYKQSFSNPTCLILATVPHNLTTITK  493

Query  447   G-NYNYLYRLFRKSNLKPFERDISTEIYQAG----STPCNGV------EGFNCYF----P  491
                Y+Y+ +  R      F  D  TE+ Q       +PC  +      E  + Y     P
Sbjct  494   PLKYSYINKCSR------FLSDDRTEVPQLVNANQYSPCVSIVPSTVWEDGDYYRKQLSP  547

Query  492   LQSYGFQPTNGVGYQPYRVVVLSF----ELLHAPATVCGPKKSTNLV-----KNKCVNFN  542
             L+  G+   +G        + + F    +      +VC   +  N          CV ++
Sbjct  548   LEGGGWLVASGSTVAMTEQLQMGFGITVQYGTDTNSVCPKLEFANDTKIASQLGNCVEYS  607

Query  543   FNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGT  602
               G++G GV        +  Q+F  D                  +  C    VSVI    
Sbjct  608   LYGVSGRGVFQNCTAVGVRQQRFVYDAYQNLVGYYSDDGN-YYCLRACVSVPVSVIYDKE  666

Query  603   NTSNQVAVLYQDVNCTEVPVAIHA--DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY  660
               +   A L+  V C  +   +           +   +     QT  GC++G  + +   
Sbjct  667   TKT--HATLFGSVACEHISSTMSQYSRSTRSMLKRRDSTYGPLQTPVGCVLGLVNSSLFV  724

Query  661   -ECDIPIGAGICASYQTQT-NSPRRARSVASQSIIAYTMSLGAENSVAYSNNS---IAIP  715
              +C +P+G  +CA   T +  +PR  RSV  +  +A +++      V   N+S   ++IP
Sbjct  725   EDCKLPLGQSLCALPDTPSTLTPRSVRSVPGEMRLA-SIAFNHPIQVDQLNSSYFKLSIP  783

Query  716   TNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQD  775
             TNF+  VT E +  ++ K +VDC  Y+C    +C  LL +YG FC+++N+AL G  + QD
Sbjct  784   TNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQLLREYGQFCSKINQALHGANLRQD  843

Query  776   KNTQEVFAQVKQIYKTPPIKDFG-GFNFSQILP---DPSKPSKRSFIEDLLFNKVTLADA  831
              + + +FA VK    +P I  FG  FN + + P        S RS IEDLLF+KVT+AD 
Sbjct  844   DSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPVSISTGSRSARSAIEDLLFDKVTIADP  903

Query  832   GFIKQYGDCL--GDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFG  889
             G+++ Y DC+  G  +ARDLICAQ   G  VLPPL+   M A YTS+LL      GWT G
Sbjct  904   GYMQGYDDCMQQGPASARDLICAQYVAGYKVLPPLMDVNMEAAYTSSLLGSIAGVGWTAG  963

Query  890   AGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQ  949
               +   IPFA  + YR NG+G+TQ VL ENQKLIAN+FN A+G +Q   ++T  A  K+Q
Sbjct  964   LSSFAAIPFAQSIFYRLNGVGITQQVLSENQKLIANKFNQALGAMQTGFTTTNEAFHKVQ  1023

Query  950   DVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVT  1009
             D VN NAQAL+ L  +LS+ FGAIS+ + DI+ RLD +E + QIDRLI GRL +L  +V 
Sbjct  1024  DAVNNNAQALSKLASELSNTFGAISASIGDIIQRLDVLEQDAQIDRLINGRLTTLNAFVA  1083

Query  1010  QQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVP  1069
             QQL+R+     SA LA  K++ECV  QSKR  FCG+G H++SF  +AP+G+ F+HV Y P
Sbjct  1084  QQLVRSESAALSAQLAKDKVNECVKAQSKRSGFCGQGTHIVSFVVNAPNGLYFMHVGYYP  1143

Query  1070  AQEKNFTTAPAICHDGKA---HFPREGVFVSNGT-----HWFVTQRNFYEPQIITTDNTF  1121
             +      +A  +C          P  G F+          W  T  +FY P+ IT+ NT 
Sbjct  1144  SNHIEVVSAYGLCDAANPTNCIAPVNGYFIKTNNTRIVDEWSYTGSSFYAPEPITSLNTK  1203

Query  1122  VSGNCDVVIGIVNNTVYDPLQPELD--SFKEELDKYFKNHTSPDVDLGDISGINASVVNI  1179
                   V    ++  +  PL        F++ELD++FKN ++   + G ++ IN +++++
Sbjct  1204  YVAP-QVTYQNISTNLPPPLLGNSTGIDFQDELDEFFKNVSTSIPNFGSLTQINTTLLDL  1262

Query  1180  QKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTS  1239
               E+  L +V K LNES IDL+ELG Y  Y KWPWYIWLGFIAGL+A+ +    + C T 
Sbjct  1263  TYEMLSLQQVVKALNESYIDLKELGNYTYYNKWPWYIWLGFIAGLVALALCVFFILCCTG  1322

Query  1240  CCSCLKGCCSCGSCCK-FDEDDSEP  1263
             C +   G   C  CC  ++E D EP
Sbjct  1323  CGTNCMGKLKCNRCCDRYEEYDLEP  1347


>sp|Q9IKD1|SPIKE_CVRSD Spike glycoprotein OS=Rat coronavirus (strain 
681) OX=33740 GN=S PE=3 SV=1
Length=1360

 Score = 1097 bits (2837),  Expect = 0.0, Method: Composition-based stats.
 Identities = 388/1407 (28%), Positives = 589/1407 (42%), Gaps = 186/1407 (13%)

Query  1     MFVFLVLLP--------LVSSQCVNLTTRTQLPPAYTN-----SFTRGVYYP-DKVFRSS  46
             +FVFL LLP              VN        P+ +      S   G YY  D+V+ ++
Sbjct  2     LFVFLTLLPSCLGYIGDFRCINLVNTRISNARAPSVSTEVVDVSKGLGTYYVLDRVYLNA  61

Query  47    VLHSTQDLFLPFFSNVTWFHAIHVSGTN--GTKRFDNPVL-PFNDGVYF-----------  92
              L  T   + P   + + +  + + GTN      F+ P L  FNDG+Y            
Sbjct  62    TLLLTG--YYPV--DGSMYRNMALMGTNTLSLNWFEPPFLSEFNDGIYAKVKNLKASLPI  117

Query  93    -ASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKS  151
              +++    II G  F  T  S T  L   N    ++  +C++  C  P      +    +
Sbjct  118   GSASYFPTIIIGSNFVNT--SYTVVLEPYNGI--IMASICQYTICQLPHTDCKPNTGGNT  173

Query  152   W-----MESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSK  206
                    +    V     N TF  V+  +L               F F    G F  Y  
Sbjct  174   LIGFWHTDLRPPVCILKRNFTFN-VNAEWLY--------------FHFYQQGGTFYAYYA  218

Query  207   HTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYY  266
                           SA   L    IG  +T++  L  +     +P  S       +  Y+
Sbjct  219   DV-----------SSATTFLFSSYIGAVLTQYFVLPYM----CSPTTS----GVSSPQYW  259

Query  267   VGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI  326
             V  L  R +L  +N+ G IT AVDCA    SE KC  +S     G+Y  S + VQP   +
Sbjct  260   VTPLVKRQYLFNFNQKGIITSAVDCASSYTSEIKCKTQSMNPNTGVYDLSGYTVQPVGLV  319

Query  327   VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTK  386
              R       C   E   A    S   W RK   NC  + S L       +  C  +  +K
Sbjct  320   YRRVRNLPDCKIEEWLAANTVPSPLNWERKTFQNCNFNLSSLLRFVQAESLSCSNIDASK  379

Query  387   LNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKV-  445
             +  +CF ++  D F I       +  G++G +  +NYK+    T C + ++    +  V 
Sbjct  380   VYGMCFGSISIDKFAIPNSRRVDLQLGKSGLLQSFNYKIDTRATSCQLYYSLAQDNVTVI  439

Query  446   ---GGNYNYLYRLFRKSNLKPFERDISTEI--YQAGSTPCNGVEGFNCYFPLQSYGFQPT  500
                  ++N  Y     +     E D++     +  G++ C   +    Y  +        
Sbjct  440   NHNPSSWNRRYGFNDVATFHSGEHDVAYAEACFTVGASYCPCAKPSTVYSCVTGKPKSAN  499

Query  501   NGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGL----TGTGVLTE--  554
                G       V +          C P   T          +  G+     G G+L +  
Sbjct  500   CPTGTSNRECNVQASGFKSKCDCTCNPSPLTTYDPRCLQARSMLGVGDHCEGLGILEDKC  559

Query  555   --------SNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSF----------GGVS  596
                     S   F+ +               +     I   T CS            GV 
Sbjct  560   GGSNICNCSADAFVGWAMDSCLSNARCHIFSNLMLNGINSGTTCSTDFQLPNTEVVTGVC  619

Query  597   VITPGTNTSNQVAVLYQDVNCTE---VPVAIHADQLTPTWRVYSTGSNVF---QTRAGCL  650
             V      ++ Q   ++++V           ++              +  +      +G +
Sbjct  620   VKYDLYGSTGQG--VFKEVKADYYNSWQNLLYDVNGNLNGFRDIVTNKTYLLRSCYSGRV  677

Query  651   IGAEHVNN--------SYECDIPIGAGI---------------C---ASYQTQTNSPRRA  684
               A H +         + +CD      I               C   A   T+ +     
Sbjct  678   SAAYHQDAPEPALLYRNLKCDYVFNNNISREETPLNYFDSYLGCVINADNSTEQSVDACD  737

Query  685   RSVASQSIIAYT--------------MSLGAENSVAYSNNSI---------AIPTNFTIS  721
               + S   + Y+              ++     +V+  N+S+          IPTNFTI+
Sbjct  738   LRMGSGLCVNYSIAHRARRSVSTGYKLTTFEPFTVSIVNDSVESVGGLYEMQIPTNFTIA  797

Query  722   VTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEV  781
                E +     K ++DC  ++CGD T C   L+ YGSFC  +N  L  +    D    +V
Sbjct  798   SHQEFIQTRSPKVTIDCAAFVCGDYTACRQQLVDYGSFCDNINAILGEVNNLIDTMQLQV  857

Query  782   FAQVKQIYKTP------PIKDFGGFNFSQILP----DPSKPS----KRSFIEDLLFNKVT  827
              + + Q                   NFS +L     D S+ +     RS IED+LF+KV 
Sbjct  858   ASALIQGVTLSSRLADGISGQIDDINFSPLLGCLGSDCSEGTKAAQGRSAIEDVLFDKVK  917

Query  828   LADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWT  887
             L+D GF++ Y +C G    RDL+C Q FNG+ VLPP+L++  I+ YT+   A  +   W+
Sbjct  918   LSDVGFVESYNNCTGGQEVRDLLCVQSFNGIKVLPPVLSESQISGYTAGATASAMFPPWS  977

Query  888   FGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGK  947
               AG    +PFA+ + YR NG+GVT NVL ENQK+IA+ FN+AIG IQ+   +T SAL K
Sbjct  978   AAAG----VPFALSVQYRINGLGVTMNVLSENQKMIASSFNNAIGAIQEGFDATNSALAK  1033

Query  948   LQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTY  1007
             +Q VVN NA+ALN L+ QLS+ FGAIS+ L +ILSRLD +EA+ QIDRLI GRL +L  Y
Sbjct  1034  IQSVVNANAEALNNLLNQLSNRFGAISASLQEILSRLDALEAQAQIDRLINGRLTALNAY  1093

Query  1008  VTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTY  1067
             V++QL     I+ SA  A  K++ECV  QS R++FCG G H++S  Q+AP+G+ F+H +Y
Sbjct  1094  VSKQLSDMTLIKVSAAQAIEKVNECVKSQSPRINFCGNGNHILSLVQNAPYGLYFIHFSY  1153

Query  1068  VPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC  1126
             VP        +P +C  G +   P+ G FV +   W  T  N+Y P+ IT  N+ V  +C
Sbjct  1154  VPTSFTTVNVSPGLCISGDRGLAPKAGYFVQDHGEWKFTGSNYYYPESITDKNSVVMSSC  1213

Query  1127  DVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL-GDISGINASVVNIQKEIDR  1185
              V          +     L  FKEELDK+FKN TS   DL  DI  +N + +++  E++R
Sbjct  1214  AVNYTKAPEVFLNTSITNLPDFKEELDKWFKNQTSIVPDLSFDIGKLNVTFLDLSYEMNR  1273

Query  1186  LNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLK  1245
             + +  KNLNES I+L+E+G YE Y+KWPWY+WL  + GL  + +  ++            
Sbjct  1274  IQDAIKNLNESYINLKEIGTYEMYVKWPWYVWL--LIGLAGVAVCVLLFFICCCTGCGSC  1331

Query  1246  GCCSCGSCCK-FDEDDSEPVLKGVKLH  1271
                 CG+CC  +    +  V+  +  H
Sbjct  1332  CFKKCGNCCDEYGGRQAGIVIHNISSH  1358


>sp|Q0ZME7|SPIKE_CVHN5 Spike glycoprotein OS=Human coronavirus 
HKU1 (isolate N5) OX=443241 GN=S PE=1 SV=1
Length=1351

 Score = 1094 bits (2829),  Expect = 0.0, Method: Composition-based stats.
 Identities = 370/1397 (26%), Positives = 590/1397 (42%), Gaps = 182/1397 (13%)

Query  1     MFVFLVLLPLVSSQCVNLTTRTQLPPAYTN------------SFTRGVYYP-DKVFRSSV  47
             MF+ + +LP   +   +          Y              S   G YY  ++V+ ++ 
Sbjct  1     MFLIIFILPTTLAVIGDFNCTNSFINDYNKTIPRISEDVVDVSLGLGTYYVLNRVYLNTT  60

Query  48    LHSTQDLFLPFFSNVTWFHAIHVSGTNGTK--RFDNPVL-PFNDGVYFASTEKSNIIRGW  104
             L  T      F  +   F  + + G+       +  P L  FN+G+ F+  + + +    
Sbjct  61    LLFTGY----FPKSGANFRDLALKGSIYLSTLWYKPPFLSDFNNGI-FSKVKNTKLYVNN  115

Query  105   IFGTTLDSKTQSLLIVNNATNVV---------IKVCEFQFCNDPFLGVYYHKNNKSWMES  155
                +   +     + VN +  +V         I  C++  C  P        +  S    
Sbjct  116   TLYSEFSTIVIGSVFVNTSYTIVVQPHNGILEITACQYTMCEYPHTVCK---SKGSIRNE  172

Query  156   EFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRD  215
              + + SS   C F+   + F  ++            F F    G F  Y     +     
Sbjct  173   SWHIDSSEPLCLFK---KNFTYNVSADWLY------FHFYQERGVFYAYYADVGM-----  218

Query  216   LPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSS---SGWTAGAAAYYVGYLQP  272
                       L  L +G  ++ +         Y+ P   +   S        Y+V  L  
Sbjct  219   ------PTTFLFSLYLGTILSHY---------YVMPLTCNAISSNTDNETLEYWVTPLSR  263

Query  273   RTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVR-FPN  331
             R +LL ++E+G IT+AVDC+   LSE +C  +SF    G+Y  S F V+P  ++ R  PN
Sbjct  264   RQYLLNFDEHGVITNAVDCSSSFLSEIQCKTQSFAPNTGVYDLSGFTVKPVATVYRRIPN  323

Query  332   ITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLC  391
             + + C      N     S   W R+  SNC  + S L       +F C  +  +K+   C
Sbjct  324   LPD-CDIDNWLNNVSVPSPLNWERRIFSNCNFNLSTLLRLVHVDSFSCNNLDKSKIFGSC  382

Query  392   FTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAW---------------  436
             F ++  D F I       +  G +G +   NYK+    + C + +               
Sbjct  383   FNSITVDKFAIPNRRRDDLQLGSSGFLQSSNYKIDISSSSCQLYYSLPLVNVTINNFNPS  442

Query  437   ---------------------------NSNNLDSKVGGNYNYLYRLFRKSNLKPFER---  466
                                        NS+          N   +    S + P      
Sbjct  443   SWNRRYGFGSFNLSSYDVVYSDHCFSVNSDFCPCADPSVVNSCAKSKPPSAICPAGTKYR  502

Query  467   --DISTEIYQAGSTPCNGVEG-FNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL---LHA  520
               D+ T +Y      C+ +    + Y P      +   G+G     + +   +    L+ 
Sbjct  503   HCDLDTTLYVKNWCRCSCLPDPISTYSPNTCPQKKVVVGIGEHCPGLGINEEKCGTQLNH  562

Query  521   PATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQ  580
              +  C P        + C++ N   +    +    N              + +  V    
Sbjct  563   SSCFCSPDAFLGWSFDSCISNNRCNIFSNFIFNGINSGTTCSNDLLYSNTEISTGV--CV  620

Query  581   TLEILDIT-PCSFGGVSVITPGT-----------------------------NTSNQVAV  610
               ++  IT    F  VS                                    +    A 
Sbjct  621   NYDLYGITGQGIFKEVSAAYYNNWQNLLYDSNGNIIGFKDFLTNKTYTILPCYSGRVSAA  680

Query  611   LYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVN--NSYECDIPIGA  668
              YQ+ +   +               + +    F +  GC++ A ++   +   CD+ +G+
Sbjct  681   FYQNSSSPALLYRNLKCSYVLNNISFISQPFYFDSYLGCVLNAVNLTSYSVSSCDLRMGS  740

Query  669   GICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNS---------IAIPTNFT  719
             G C  Y   ++  +R    +      Y        +V++ N+S         I IPTNFT
Sbjct  741   GFCIDYALPSSRRKRRGISS-----PYRFVTFEPFNVSFVNDSVETVGGLFEIQIPTNFT  795

Query  720   ISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQ  779
             I+   E +  S  K ++DC+ ++C +   C +LL +YG+FC  +N  L  +    D    
Sbjct  796   IAGHEEFIQTSSPKVTIDCSAFVCSNYAACHDLLSEYGTFCDNINSILNEVNDLLDITQL  855

Query  780   EVFAQVKQ------IYKTPPIKDFGGFNFSQI---LPDPSKPSKRSFIEDLLFNKVTLAD  830
             +V   + Q         T    D    +F  +   L      S RS +EDLLFNKV L+D
Sbjct  856   QVANALMQGVTLSSNLNTNLHSDVDNIDFKSLLGCLGSQCGSSSRSLLEDLLFNKVKLSD  915

Query  831   AGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGA  890
              GF++ Y +C G    RDL+C Q FNG+ VLPP+L++  I+ YT+A     +   W+  A
Sbjct  916   VGFVEAYNNCTGGSEIRDLLCVQSFNGIKVLPPILSETQISGYTTAATVAAMFPPWSAAA  975

Query  891   GAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQD  950
             G    +PF++ + YR NG+GVT +VL +NQKLIAN FN A+  IQ+  ++T SAL K+Q 
Sbjct  976   G----VPFSLNVQYRINGLGVTMDVLNKNQKLIANAFNKALLSIQNGFTATNSALAKIQS  1031

Query  951   VVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQ  1010
             VVN NAQALN+L++QL + FGAISS L +ILSRLD +EA+VQIDRLI GRL +L  YV+Q
Sbjct  1032  VVNANAQALNSLLQQLFNKFGAISSSLQEILSRLDNLEAQVQIDRLINGRLTALNAYVSQ  1091

Query  1011  QLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPA  1070
             QL     I+A A+ A  K++ECV  QS R++FCG G H++S  Q+AP+G++F+H +Y P 
Sbjct  1092  QLSDITLIKAGASRAIEKVNECVKSQSPRINFCGNGNHILSLVQNAPYGLLFIHFSYKPT  1151

Query  1071  QEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVV  1129
               K    +P +C  G +   P++G F+     W  T  ++Y P+ I+  N     +C V 
Sbjct  1152  SFKTVLVSPGLCLSGDRGIAPKQGYFIKQNDSWMFTGSSYYYPEPISDKNVVFMNSCSVN  1211

Query  1130  IGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEV  1189
                      +   P L  F+ EL  +FKNHTS   +L   S INA+ +++  E++ + E 
Sbjct  1212  FTKAPFIYLNNSIPNLSDFEAELSLWFKNHTSIAPNLTFNSHINATFLDLYYEMNVIQES  1271

Query  1190  AKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCS  1249
              K+LN S I+L+E+G YE Y+KWPWYIWL  +   I  +M+   +CC T C S       
Sbjct  1272  IKSLNSSFINLKEIGTYEMYVKWPWYIWLLIVILFIIFLMILFFICCCTGCGSA--CFSK  1329

Query  1250  CGSCCKFDEDDSEPVLK  1266
             C +CC      ++ V+K
Sbjct  1330  CHNCCDEYGGHNDFVIK  1346


>sp|Q14EB0|SPIKE_CVHN2 Spike glycoprotein OS=Human coronavirus 
HKU1 (isolate N2) OX=443240 GN=S PE=3 SV=1
Length=1351

 Score = 1092 bits (2823),  Expect = 0.0, Method: Composition-based stats.
 Identities = 367/1394 (26%), Positives = 592/1394 (42%), Gaps = 176/1394 (13%)

Query  1     MFVFLVLLPLVSSQCVNLTTRTQLPPAYTN------------SFTRGVYYP-DKVFRSSV  47
             MF+ + +LP   +   +          Y              S   G YY  ++V+ ++ 
Sbjct  1     MFLIIFILPTTLAVIGDFNCTNSFINDYNKTIPRISEDVVDVSLGLGTYYVLNRVYLNTT  60

Query  48    LHSTQDLFLPFFSNVTWFHAIHVSGTNGTK--RFDNPVL-PFNDGVYFASTEKSNIIRGW  104
             L  T      F  +   F  + + G+       +  P L  FN+G+ F+  + + +    
Sbjct  61    LLFTGY----FPKSGANFRDLALKGSKYLSTLWYKPPFLSDFNNGI-FSKVKNTKLYVNN  115

Query  105   IFGTTLDSKTQSLLIVNNATNVV---------IKVCEFQFCNDPFLGVYYHKNNKSWMES  155
                +   +     + VN +  +V         I  C++  C  P        +  S    
Sbjct  116   TLYSEFSTIVIGSVFVNTSYTIVVQPHNGILEITACQYTMCEYPHTVCK---SKGSIRNE  172

Query  156   EFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRD  215
              + + SS   C F+   + F  ++            F F    G F  Y     +     
Sbjct  173   SWHIDSSEPLCLFK---KNFTYNVSADWLY------FHFYQERGVFYAYYADVGM-----  218

Query  216   LPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTF  275
                       L  L +G  ++ +  +    ++       SS        Y+V  L  R +
Sbjct  219   ------PTTFLFSLYLGTILSHYYVMPLTCKAI------SSNTDNETLEYWVTPLSRRQY  266

Query  276   LLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVR-FPNITN  334
             LL ++E+G IT+AVDC+   LSE +C  +SF    G+Y  S F V+P  ++ R  PN+ +
Sbjct  267   LLNFDEHGVITNAVDCSSSFLSEIQCKTQSFAPNTGVYDLSGFTVKPVATVYRRIPNLPD  326

Query  335   LCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTN  394
              C      N     S   W R+  SNC  + S L       +F C  +  +K+   CF +
Sbjct  327   -CDIDNWLNNVSVPSPLNWERRIFSNCNFNLSTLLRLVHVDSFSCNNLDKSKIFGSCFNS  385

Query  395   VYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSN---------------  439
             +  D F I       +  G +G +   NYK+    + C + ++                 
Sbjct  386   ITVDKFAIPNRRRDDLQLGSSGFLQSSNYKIDISSSSCQLYYSLPLVNVTINNFNPSSWN  445

Query  440   ------------------------NLDSKVGGNYNYLYRLFRKSNL--------KPFERD  467
                                     N D     + + +    +   L        K    D
Sbjct  446   RRYGFGSFNVSSYDVVYSDHCFSVNSDFCPCADPSVVNSCVKSKPLSAICPAGTKYRHCD  505

Query  468   ISTEIYQAGSTPCNGVEG-FNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL---LHAPAT  523
             + T +Y      C+ +    + Y P      +   G+G     + +   +    L+  + 
Sbjct  506   LDTTLYVNNWCRCSCLPDPISTYSPNTCPQKKVVVGIGEHCPGLGINEEKCGTQLNHSSC  565

Query  524   VCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLE  583
              C P        + C++ N   +    +    N              + +  V      +
Sbjct  566   SCSPDAFLGWSFDSCISNNRCNIFSNFIFNGINSGTTCSNDLLYSNTEVSTGV--CVNYD  623

Query  584   ILDIT-PCSFGGVSVITPGTNTSNQVAVLYQDVNCTE----------------VPVAIHA  626
             +  IT    F  VS        +         +   +                V  A + 
Sbjct  624   LYGITGQGIFKEVSAAYYNNWQNLLYDSNGNIIGFKDFLTNKTYTILPCYSGRVSAAFYQ  683

Query  627   DQLTPTWRVYS-------------TGSNVFQTRAGCLIGAEHVN--NSYECDIPIGAGIC  671
             +  +P     +             +    F +  GC++ A ++   +   CD+ +G+G C
Sbjct  684   NSSSPALLYRNLKCSYVLNNISFISQPFYFDSYLGCVLNAVNLTSYSVSSCDLRMGSGFC  743

Query  672   ASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNS---------IAIPTNFTISV  722
               Y   ++  +R    +      Y        +V++ N+S         I IPTNFTI+ 
Sbjct  744   IDYALPSSRRKRRGISS-----PYRFVTFEPFNVSFVNDSVETVGGLFEIQIPTNFTIAG  798

Query  723   TTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVF  782
               E +  S  K ++DC+ ++C +   C +LL +YG+FC  +N  L  +    D    +V 
Sbjct  799   HEEFIQTSSPKVTIDCSAFVCSNYAACHDLLSEYGTFCDNINSILNEVNDLLDITQLQVA  858

Query  783   AQVKQ------IYKTPPIKDFGGFNFSQI---LPDPSKPSKRSFIEDLLFNKVTLADAGF  833
               + Q         T    D    +F  +   L      S RS +EDLLFNKV L+D GF
Sbjct  859   NALMQGVTLSSNLNTNLHSDVDNIDFKSLLGCLGSQCGSSSRSLLEDLLFNKVKLSDVGF  918

Query  834   IKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAA  893
             ++ Y +C G    RDL+C Q FNG+ VLPP+L++  I+ YT+A     +   W+  AG  
Sbjct  919   VEAYNNCTGGSEIRDLLCVQSFNGIKVLPPILSETQISGYTTAATVAAMFPPWSAAAG--  976

Query  894   LQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVN  953
               +PF++ + YR NG+GVT +VL +NQKLIAN FN A+  IQ+  ++T SAL K+Q VVN
Sbjct  977   --VPFSLNVQYRINGLGVTMDVLNKNQKLIANAFNKALLSIQNGFTATNSALAKIQSVVN  1034

Query  954   QNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI  1013
              NAQALN+L++QL + FGAISS L +ILSRLD +EA+VQIDRLI GRL +L  YV+QQL 
Sbjct  1035  ANAQALNSLLQQLFNKFGAISSSLQEILSRLDNLEAQVQIDRLINGRLTALNAYVSQQLS  1094

Query  1014  RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEK  1073
                 I+A A+ A  K++ECV  QS R++FCG G H++S  Q+AP+G++F+H +Y P   K
Sbjct  1095  DITLIKAGASRAIEKVNECVKSQSPRINFCGNGNHILSLVQNAPYGLLFIHFSYKPTSFK  1154

Query  1074  NFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGI  1132
                 +P +C  G +   P++G F+     W  T  ++Y P+ I+  N     +C V    
Sbjct  1155  TVLVSPGLCLSGDRGIAPKQGYFIKQNDSWMFTGSSYYYPEPISDKNVVFMNSCSVNFTK  1214

Query  1133  VNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKN  1192
                   +   P L  F+ E   +FKNHTS   +L   S INA+ +++  E++ + E  K+
Sbjct  1215  APFIYLNNSIPNLSDFEAEFSLWFKNHTSIAPNLTFNSHINATFLDLYYEMNVIQESIKS  1274

Query  1193  LNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGS  1252
             LN S I+L+E+G YE Y+KWPWYIWL  +   I  +M+   +CC T C S       C +
Sbjct  1275  LNSSFINLKEIGTYEMYVKWPWYIWLLIVILFIIFLMILFFICCCTGCGSA--CFSKCHN  1332

Query  1253  CCKFDEDDSEPVLK  1266
             CC      ++ V+K
Sbjct  1333  CCDEYGGHNDFVIK  1346


>sp|P25193|SPIKE_CVBQ Spike glycoprotein OS=Bovine coronavirus 
(strain Quebec) OX=11133 GN=S PE=3 SV=2
Length=1363

 Score = 1091 bits (2822),  Expect = 0.0, Method: Composition-based stats.
 Identities = 373/1410 (26%), Positives = 595/1410 (42%), Gaps = 199/1410 (14%)

Query  2     FVFLVLLPLVSSQCVNLTTRTQL-------PPAYTN-----SFTRGVYYP-DKVFRSSVL  48
              + L+ LP+  +   +L   T          P+ +      +   G YY  D+V+ ++ L
Sbjct  3     LILLISLPMAFAVIGDLKCTTVSINDVDTGAPSISTDIVDVTNGLGTYYVLDRVYLNTTL  62

Query  49    HSTQDLFLPFFSNVTWFHAIHVSGTN--GTKRFDNPVL-PFNDGVYFASTEKSNIIRGWI  105
                   + P  ++ + +  + + GT       F  P L  F +G+ FA  + + +I+  +
Sbjct  63    LLNG--YYP--TSGSTYRNMALKGTLLLSRLWFKPPFLSDFINGI-FAKVKNTKVIKKGV  117

Query  106   FGTTLDSKTQSLLIVNNATNVV-----------------IKVCEFQFCNDPFLGVYYHKN  148
               +   + T     VN + +VV                 I VC++  C  P      H  
Sbjct  118   MYSEFPAITIGSTFVNTSYSVVVQPHTTNLDNKLQGLLEISVCQYTMCEYPHT--ICHPK  175

Query  149   NKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHT  208
               +     +   +   +C ++   + F  D+            F F    G F  Y   T
Sbjct  176   LGNKRVELWHWDTGVVSCLYK---RNFTYDVNADYLY------FHFYQEGGTFYAYFTDT  226

Query  209   PINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVG  268
              +             + L ++ +G  ++ +         Y+ P   SS  T     Y+V 
Sbjct  227   GV-----------VTKFLFNVYLGTVLSHY---------YVLPLTCSSAMT---LEYWVT  263

Query  269   YLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVR  328
              L  + +LL +N++G I +AVDC  D +SE KC   S     G+Y+ + + VQP   + R
Sbjct  264   PLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELNGYTVQPIADVYR  323

Query  329   -FPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKL  387
               PN+ + C      N     S   W RK  SNC  + S L +     +F C  +   K+
Sbjct  324   RIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQADSFTCNNIDAAKI  382

Query  388   NDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSN----NLDS  443
               +CF+++  D F I       +  G  G +  +NY++    T C + +N      ++  
Sbjct  383   YGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTTATSCQLYYNLPAANVSVSR  442

Query  444   KVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQS---------  494
                  +N  +    +   KP    + T      +  C       C   L           
Sbjct  443   FNPSTWNRRFGFTEQFVFKPQPVGVFTHHDVVYAQHCFKAPKNFCPCKLDGSLCVGNGPG  502

Query  495   -YGFQPTNGVGYQPYRV-------------------------------------------  510
                    +G+G  P                                              
Sbjct  503   IDAGYKNSGIGTCPAGTNYLTCHNAAQCDCLCTPDPITSKSTGPYKCPQTKYLVGIGEHC  562

Query  511   --VVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRD  568
               + +  +        C P+       + C+  +   +    +  + N          + 
Sbjct  563   SGLAIKSDYCGGNPCTCQPQAFLGWSVDSCLQGDRCNIFANFIFHDVNSGTTCSTDLQKS  622

Query  569   IADTTDAVRDPQTLEILDIT-PCSFGGVSVITPGTNTS----------------NQVAVL  611
               D    V      ++  IT    F  V+     +  +                     +
Sbjct  623   NTDIILGV--CVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFM  680

Query  612   YQDVNCTEVPVAIHADQLTPTWRVYSTG-SNVFQTRAGCLIGAEHVNNSYECDIPIGAGI  670
              +      V  A HA+   P     +   + VF       +   +  +SY     +G  +
Sbjct  681   IRSCYSGRVSAAFHANSSEPALLFRNIKCNYVFNNTLSRQLQPINYFDSY-----LGCVV  735

Query  671   CASYQTQTNSPRRARSVASQSIIAYT--------------MSLGAENSVAYSNNS-----  711
              A   T +       +V S   + Y+               +     +V   N+S     
Sbjct  736   NADNSTSSVVQTCDLTVGSGYCVDYSTKRRSRRAITTGYRFTNFEPFTVNSVNDSLEPVG  795

Query  712   ----IAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRAL  767
                 I IP+ FTI    E +  S  K ++DC+ ++CGD   C + L++YGSFC  +N  L
Sbjct  796   GLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGSFCDNINAIL  855

Query  768   TGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGF-----NFSQILP----DPSKPSKRSF  817
             T +    D    +V  + +  +  +  +KD   F     NFS +L       +K S RS 
Sbjct  856   TEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSACNKVSSRSA  915

Query  818   IEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSAL  877
             IEDLLF+KV L+D GF++ Y +C G    RDLIC Q +NG+ VLPPLL+   I+ YT A 
Sbjct  916   IEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSVNQISGYTLAA  975

Query  878   LAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDS  937
              + ++    +   G    +PF + + YR NGIGVT +VL +NQKLIAN FN+A+  IQ+ 
Sbjct  976   TSASLFPPLSAAVG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFNNALDAIQEG  1031

Query  938   LSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLI  997
               +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +EA+ QIDRLI
Sbjct  1032  FDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALEAQAQIDRLI  1091

Query  998   TGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAP  1057
              GRL +L  YV+QQL  +  ++ SA  A  K++ECV  QS R++FCG G H++S  Q+AP
Sbjct  1092  NGRLTALNVYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNHIISLVQNAP  1151

Query  1058  HGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQRNFYEPQIIT  1116
             +G+ F+H +YVP +      +P +C  G +   P+ G FV+    W  T   +Y P+ IT
Sbjct  1152  YGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGSGYYYPEPIT  1211

Query  1117  TDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASV  1176
              +N  V   C V      + + +   P L  FKEELD++FKN TS   DL  +  IN + 
Sbjct  1212  GNNVVVMSTCAVNYTKAPDVMLNISTPNLHDFKEELDQWFKNQTSVAPDL-SLDYINVTF  1270

Query  1177  VNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCC  1236
             +++Q E++RL E  K LN+S I+L+++G YE Y+KWPWY+WL  + G   + M+ ++   
Sbjct  1271  LDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGVAMLVLLFFI  1328

Query  1237  MTSCCSCLKGCCSCGSCCKFDEDDSEPVLK  1266
                          CG CC       E V+K
Sbjct  1329  CCCTGCGTSCFKICGGCCDDYTGHQELVIK  1358


>sp|Q5MQD0|SPIKE_CVHN1 Spike glycoprotein OS=Human coronavirus 
HKU1 (isolate N1) OX=443239 GN=S PE=1 SV=1
Length=1356

 Score = 1050 bits (2716),  Expect = 0.0, Method: Composition-based stats.
 Identities = 373/1393 (27%), Positives = 580/1393 (42%), Gaps = 171/1393 (12%)

Query  1     MFVFLVLLPLVSSQCVNLTTRTQLPPAYTN----------SFTRGVYYP-DKVFRSSVLH  49
             + +F++   L      N T         T           S+  G YY  D+V+ ++ + 
Sbjct  3     LIIFILPTTLAVIGDFNCTNFAINDLNTTVPRISEYVVDVSYGLGTYYILDRVYLNTTIL  62

Query  50    STQDLFLPFFSNVTWFHAIHVSGTNGTK--RFDNPVL-PFNDGVYFASTEKSNIIRGWIF  106
              T      F  +   F  + + GT       +  P L  FN+G+ F+  + + +      
Sbjct  63    FTGY----FPKSGANFRDLSLKGTTYLSTLWYQKPFLSDFNNGI-FSRVKNTKLYVNKTL  117

Query  107   GTTLDSKTQSLLIVNNATNVV---------IKVCEFQFCNDPFLGVYYHKNNKSWMESEF  157
              +   +     + +NN+  +V         I  C++  C  P        +  S     +
Sbjct  118   YSEFSTIVIGSVFINNSYTIVVQPHNGVLEITACQYTMCEYPHTICK---SKGSSRNESW  174

Query  158   RVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLP  217
                 S   C F+   + F  ++            F F    G F  Y   + +       
Sbjct  175   HFDKSEPLCLFK---KNFTYNVSTDWLY------FHFYQERGTFYAYYADSGM-------  218

Query  218   QGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLL  277
                     L  L +G  ++ +  L     +       SS        Y+V  L  R +LL
Sbjct  219   ----PTTFLFSLYLGTLLSHYYVLPLTCNAI------SSNTDNETLQYWVTPLSKRQYLL  268

Query  278   KYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVR-FPNITNLC  336
             K++  G IT+AVDC+    SE +C  KS     G+Y  S F V+P  ++ R  P++ + C
Sbjct  269   KFDNRGVITNAVDCSSSFFSEIQCKTKSLLPNTGVYDLSGFTVKPVATVHRRIPDLPD-C  327

Query  337   PFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVY  396
                +  N     S   W RK  SNC  + S L       +F C     +K+   CF ++ 
Sbjct  328   DIDKWLNNFNVPSPLNWERKIFSNCNFNLSTLLRLVHTDSFSCNNFDESKIYGSCFKSIV  387

Query  397   ADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKV---GGNYNYLY  453
              D F I       +  G +G +   NYK+    + C + ++   ++  +     +     
Sbjct  388   LDKFAIPNSRRSDLQLGSSGFLQSSNYKIDTTSSSCQLYYSLPAINVTINNYNPSSWNRR  447

Query  454   RLFRKSNLKPFERDISTEIYQAGSTPC---NGVEGFNCYF-----------PLQSYGFQP  499
               F   NL       S   +   +T C         +C                      
Sbjct  448   YGFNNFNLSSHSVVYSRYCFSVNNTFCPCAKPSFASSCKSHKPPSASCPIGTNYRSCEST  507

Query  500   TNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTE-----  554
             T        R   L   +       C  KKS   V   C  F        GVL       
Sbjct  508   TVLDHTDWCRCSCLPDPITAYDPRSCSQKKSLVGVGEHCAGFGV-DEEKCGVLDGSYNVS  566

Query  555   ---SNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFG----GVSVITPGTNTSNQ  607
                S   FL +        +  +   +     I   T CS         V T      + 
Sbjct  567   CLCSTDAFLGWSYDTCVSNNRCNIFSNFILNGINSGTTCSNDLLQPNTEVFTDVCVDYDL  626

Query  608   VAVLYQDV--NCTEVPVAIHADQLTPTW--------RVYSTGSNVFQTRAGCLIGAEHVN  657
               +  Q +    + V      + L  +          V +   N+F   AG +  A H N
Sbjct  627   YGITGQGIFKEVSAVYYNSWQNLLYDSNGNIIGFKDFVTNKTYNIFPCYAGRVSAAFHQN  686

Query  658   NS--------YECDIPIGA------------------------------------GICAS  673
              S         +C   +                                      G C  
Sbjct  687   ASSLALLYRNLKCSYVLNNISLTTQPYFDSYLGCVFNADNLTDYSVSSCALRMGSGFCVD  746

Query  674   YQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNS---------IAIPTNFTISVTT  724
             Y + ++S  R +  +  +  +Y        +V++ N+S         I IPTNFTI    
Sbjct  747   YNSPSSSSSRRKRRSISA--SYRFVTFEPFNVSFVNDSIESVGGLYEIKIPTNFTIVGQE  804

Query  725   EILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQ  784
             E +  +  K ++DC++++C +   C +LL +YG+FC  +N  L  +    D     V   
Sbjct  805   EFIQTNSPKVTIDCSLFVCSNYAACHDLLSEYGTFCDNINSILDEVNGLLDTTQLHVADT  864

Query  785   VKQ------IYKTPPIKDFGGFNFSQI---LPDPSKPSKRSFIEDLLFNKVTLADAGFIK  835
             + Q         T    D    NF  +   L      S RSF EDLLF+KV L+D GF++
Sbjct  865   LMQGVTLSSNLNTNLHFDVDNINFKSLVGCLGPHCGSSSRSFFEDLLFDKVKLSDVGFVE  924

Query  836   QYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQ  895
              Y +C G    RDL+C Q FNG+ VLPP+L++  I+ YT+A     +   W+  AG    
Sbjct  925   AYNNCTGGSEIRDLLCVQSFNGIKVLPPILSESQISGYTTAATVAAMFPPWSAAAG----  980

Query  896   IPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQN  955
             IPF++ + YR NG+GVT +VL +NQKLIA  FN+A+  IQ+  S+T SAL K+Q VVN N
Sbjct  981   IPFSLNVQYRINGLGVTMDVLNKNQKLIATAFNNALLSIQNGFSATNSALAKIQSVVNSN  1040

Query  956   AQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRA  1015
             AQALN+L++QL + FGAISS L +ILSRLD +EA+VQIDRLI GRL +L  YV+QQL   
Sbjct  1041  AQALNSLLQQLFNKFGAISSSLQEILSRLDALEAQVQIDRLINGRLTALNAYVSQQLSDI  1100

Query  1016  AEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNF  1075
             + ++  A LA  K++ECV  QS R++FCG G H++S  Q+AP+G++F+H +Y P   K  
Sbjct  1101  SLVKFGAALAMEKVNECVKSQSPRINFCGNGNHILSLVQNAPYGLLFMHFSYKPISFKTV  1160

Query  1076  TTAPAICHDGK-AHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVN  1134
               +P +C  G     P++G F+ +  HW  T  ++Y P+ I+  N      C V      
Sbjct  1161  LVSPGLCISGDVGIAPKQGYFIKHNDHWMFTGSSYYYPEPISDKNVVFMNTCSVNFTKAP  1220

Query  1135  NTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG-DISGINASVVNIQKEIDRLNEVAKNL  1193
                 +   P+L  F+ EL  +FKN TS   +L  ++  INA+ +++  E++ + E  K+L
Sbjct  1221  LVYLNHSVPKLSDFESELSHWFKNQTSIAPNLTLNLHTINATFLDLYYEMNLIQESIKSL  1280

Query  1194  NESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSC  1253
             N S I+L+++G YE Y+KWPWY+WL      I  +++   +CC T C S       C +C
Sbjct  1281  NNSYINLKDIGTYEMYVKWPWYVWLLISFSFIIFLVLLFFICCCTGCGSAC--FSKCHNC  1338

Query  1254  CKFDEDDSEPVLK  1266
             C       + V+K
Sbjct  1339  CDEYGGHHDFVIK  1351


>sp|Q9QAR5|SPIKE_CVBLS Spike glycoprotein OS=Bovine coronavirus 
(strain LSU-94LSS-051) OX=233261 GN=S PE=3 SV=1
Length=1363

 Score = 995 bits (2571),  Expect = 0.0, Method: Composition-based stats.
 Identities = 370/1372 (27%), Positives = 579/1372 (42%), Gaps = 149/1372 (11%)

Query  9     PLVSSQCVNLTTRTQLPPAYTNSFTRGVYYP-DKVFRSSVLHSTQDLFLPFFSNVTWFHA  67
               VS   V+    +        +   G YY  D+V+ ++ L      + P  ++ + +  
Sbjct  22    TTVSINDVDTGVPSISTDTVDVTNGLGTYYVLDRVYLNTTLLLNG--YYP--TSGSTYRN  77

Query  68    IHVSGTN--GTKRFDNPVL-PFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNAT  124
             + + GT    T  F  P L  F +G+ FA  + + +I+  +  +   + T     VN + 
Sbjct  78    MALKGTLLLSTLWFKPPFLSDFTNGI-FAKVKNTKVIKDGVKYSEFPAITIGSTFVNTSY  136

Query  125   NVV-----------------IKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCT  167
             +VV                 I VC++  C  P      + N  +     +   +   +C 
Sbjct  137   SVVVQPHTTNLDNKLQGLLEISVCQYTMCEYP--NTICNPNLGNQRVELWHWDTGVVSCL  194

Query  168   FEYVSQPFLMDLEGKQGNFKNLRE----------------FVFKNIDGYFKIYSKHTPIN  211
             ++   + F  D+      F   +E                F+F    G    +    P+ 
Sbjct  195   YK---RNFTYDVNADYLYFHFYQEGGTFYAYFTDTGVVTKFLFNVYLGTVLSHYYVMPLT  251

Query  212   LVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQ  271
                 L   +          +           A+        +      + A +  V  L 
Sbjct  252   CNSALTLEYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELN  311

Query  272   PRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPN  331
               T     +    I +  DC ++     K        E+  +   NF +    S ++  +
Sbjct  312   GYTVQPIADVYRRIPNLPDCNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQADS  371

Query  332   IT----------NLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNS-ASFSTFKC-  379
              T           +C      +           +  +      Y   +N     +   C 
Sbjct  372   FTCNNIDAAKIYGMCFSSITIDKFAIP---NGRKVDLQLGNLGYLQSFNYRIDTTATSCQ  428

Query  380   --YGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYN-------YKLPDDFT  430
               Y +    ++   F     +       E     P   G   D++       +K P +F 
Sbjct  429   LYYNLPAANVSVSRFNPSTWNR-RFGFTEQSVFKPQPAGVFTDHDVVYAQHCFKAPTNFC  487

Query  431   GCVIAWNS------------NNLDSKVGGNYNYLYRLFRKSNLKPFERDI-----STEIY  473
              C +  +              N                  +              +T  Y
Sbjct  488   PCKLDGSLCVGSGSGIDAGYKNTGIGTCPAGTNYLTCHNAAQCGCLCTPDPITSKATGPY  547

Query  474   QAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPY--------------RVVVLSFELLH  519
             +   T      G +C        +   N    QP               R  + +  +LH
Sbjct  548   KCPQTKYLVGIGEHCSGLAIKSDYCGGNPCSCQPQAFLGWSVDSCLQGDRCNIFANFILH  607

Query  520   A--PATVCGP---KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTT  573
                  T C     K +T+++   CVN++  G+TG G+  E N  +   +Q    D     
Sbjct  608   DVNSGTTCSTDLQKSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNL  667

Query  574   DAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTW  633
                RD  T     I  C  G VS        S++ A+L+++  C  V     + QL P  
Sbjct  668   YGFRDYLTNRTFMIRSCYSGRVSAAFHAN--SSEPALLFRNFKCNYVFNNTLSRQLQPI-  724

Query  634   RVYSTGSNVFQTRAGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQS  691
                    N F +  GC++ A++  +S    CD+ +G+G C  Y T     RR+R   +  
Sbjct  725   -------NYFDSYLGCVVNADNSTSSVVQTCDLTVGSGYCVDYST----KRRSRRSITTG  773

Query  692   IIAYTMSLGAENSVAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGD  745
                        NSV  S         I IP+ FTI    E +  S  K ++DC+ ++CGD
Sbjct  774   YRFTNFEPFTVNSVNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGD  833

Query  746   STECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN---  801
                C + L++YGSFC  +N  LT +    D    +V  + +  +  +  +KD   FN   
Sbjct  834   YAACKSQLVEYGSFCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDD  893

Query  802   --FSQILP----DPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKF  855
               FS +L     D +K S RS IEDLLF+KV L+D GF++ Y +C G    RDLIC Q +
Sbjct  894   INFSPVLGCLGSDCNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSY  953

Query  856   NGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNV  915
             NG+ VLPPLL++  I+ YT A  + ++   W+  AG    +PF + + YR NGIGVT +V
Sbjct  954   NGIKVLPPLLSENQISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDV  1009

Query  916   LYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISS  975
             L +NQKLIAN FN+A+G IQ+   +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS
Sbjct  1010  LSQNQKLIANAFNNALGAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISS  1069

Query  976   VLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG  1035
              L +ILSRLD +EA+ QIDRLI GRL +L  YV+QQL  +  ++ SA  A  K++ECV  
Sbjct  1070  SLQEILSRLDALEAQAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKS  1129

Query  1036  QSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGV  1094
             QS R++FCG G H++S  Q+AP+G+ F+H +YVP +      +P +C  G +   P+ G 
Sbjct  1130  QSSRINFCGNGNHIISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGY  1189

Query  1095  FVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDK  1154
             FV+    W  T   +Y P+ IT +N  V   C V      + + +   P L  FKEELD+
Sbjct  1190  FVNVNNTWMFTGSGYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLPDFKEELDQ  1249

Query  1155  YFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPW  1214
             +FKN TS   DL  +  IN + +++Q E++RL E  K LN+S I+L+++G YE Y+KWPW
Sbjct  1250  WFKNQTSVAPDL-SLDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPW  1308

Query  1215  YIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK  1266
             Y+WL  + G   + M+ ++                CG CC       E V+K
Sbjct  1309  YVWL--LIGFAGVAMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQELVIK  1358


>sp|P25192|SPIKE_CVBLY Spike glycoprotein OS=Bovine coronavirus 
(strain LY-138) OX=11131 GN=S PE=3 SV=1
Length=1363

 Score = 986 bits (2549),  Expect = 0.0, Method: Composition-based stats.
 Identities = 374/1370 (27%), Positives = 587/1370 (43%), Gaps = 145/1370 (11%)

Query  9     PLVSSQCVNLTTRTQLPPAYTNSFTRGVYYP-DKVFRSSVLHSTQDLFLPFFSNVTWFHA  67
               VS   V+    +        +   G YY  D+V+ ++ L      + P  ++ + +  
Sbjct  22    TTVSINDVDTGVPSVSTDTVDVTNGLGTYYVLDRVYLNTTLLLNG--YYP--TSGSTYRN  77

Query  68    IHVSGTN--GTKRFDNPVL-PFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNAT  124
             + + GT    T  F  P L  F +G+ FA  + + +I+  +  +   + T     VN + 
Sbjct  78    MALKGTLLLSTLWFKPPFLSDFINGI-FAKVKNTKVIKNGVMYSEFPAITIGSTFVNTSY  136

Query  125   NVV-----------------IKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCT  167
             +VV                 I VC++  C  P      H N  +     +   +   +C 
Sbjct  137   SVVVQPHTTNLDNKLQGLLEISVCQYTMCEYPHT--ICHPNLGNRRIELWHWDTGVVSCL  194

Query  168   FEY-----VSQPFLM-----DLEGKQGNFKN---LREFVFKNIDGYFKIYSKHTPINLVR  214
             ++      V+  +L      +       F +   + +F+F    G    +    P+    
Sbjct  195   YKRNFTYDVNADYLYFHFYQEGGTFYAYFTDTGVVTKFLFNVYLGTVLSHYYVMPLTCNS  254

Query  215   DLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRT  274
              +   +          +           A+        +      + A +  V  L   T
Sbjct  255   AMTLEYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELNGYT  314

Query  275   FLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNIT-  333
                  +    I +  DC ++     K        E+  +   NF +    S ++  + T 
Sbjct  315   VQPIADVYRRIPNLPDCNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQADSFTC  374

Query  334   ---------NLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNS-ASFSTFKC---Y  380
                       +C      +           +  +      Y   +N     +   C   Y
Sbjct  375   NNIDAAKIYGMCFSSITIDKFAIP---NGRKVDLQLGNLGYLQSFNYRIDTTATSCQLYY  431

Query  381   GVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYN-------YKLPDDFTGCV  433
              +    ++   F     +       E     P   G   D++       +K P +F  C 
Sbjct  432   NLPAANVSVSRFNPSTWNR-RFGFTEQSVFKPQPVGVFTDHDVVYAQHCFKAPTNFCPCK  490

Query  434   I-------------AWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDI-----STEIYQA  475
             +             A   N+         NYL      +              ST  Y+ 
Sbjct  491   LDGSLCVGSGSGIDAGYKNSGIGTCPAGTNYLT-CHNAAQCDCLCTPDPITSKSTGPYKC  549

Query  476   GSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPY--------------RVVVLSFELLHA-  520
               T      G +C        +   N    QP               R  + +  +LH  
Sbjct  550   PQTKYLVGIGEHCSGLAIKSDYCGGNPCTCQPQAFLGWSVDSCLQGDRCNIFANFILHDV  609

Query  521   -PATVCGP---KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDA  575
                T C     K +T+++   CVN++  G+TG G+  E N  +   +Q    D       
Sbjct  610   NSGTTCSTDLQKSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYG  669

Query  576   VRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV  635
              RD  T     I  C  G VS        S++ A+L++++ C  V     + QL P    
Sbjct  670   FRDYLTNRTFMIRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI---  724

Query  636   YSTGSNVFQTRAGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSII  693
                  N F +  GC++ A++  +S    CD+ +G+G C  Y T     RR+R   +    
Sbjct  725   -----NYFDSYLGCVVNADNSTSSAVQTCDLTVGSGYCVDYST----KRRSRRAITTGYR  775

Query  694   AYTMSLGAENSVAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDST  747
                      NSV  S         I IP+ FTI    E + +S  K ++DC+ ++CGD  
Sbjct  776   FTNFEPFTVNSVNDSLEPVGGLYEIQIPSEFTIGNMEEFIQISSPKVTIDCSAFVCGDYA  835

Query  748   ECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN-----  801
              C + L++YGSFC  +N  LT +    D    +V  + +  +  +  +KD   FN     
Sbjct  836   ACKSQLVEYGSFCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDIN  895

Query  802   FSQILP----DPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNG  857
             FS +L     D +K S RS IEDLLF+KV L+D GF++ Y +C G    RDLIC Q +NG
Sbjct  896   FSPVLGCLGSDCNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNG  955

Query  858   LTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLY  917
             + VLPPLL++  I+ YT A  + ++   W+  AG    +PF + + YR NGIGVT +VL 
Sbjct  956   IKVLPPLLSENQISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLS  1011

Query  918   ENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVL  977
             +NQKLIAN FN+A+  IQ+   +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L
Sbjct  1012  QNQKLIANAFNNALDAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSL  1071

Query  978   NDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQS  1037
              +ILSRLD +EA+ QIDRLI GRL +L  YV+QQL  +  ++ SA  A  K++ECV  QS
Sbjct  1072  QEILSRLDALEAQAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQS  1131

Query  1038  KRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFV  1096
              R++FCG G H++S  Q+AP+G+ F+H +YVP +      +P +C  G +   P+ G FV
Sbjct  1132  SRINFCGNGNHIISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFV  1191

Query  1097  SNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYF  1156
             +    W  T   +Y P+ IT +N  V   C V      + + +   P L  FKEELD++F
Sbjct  1192  NVNNTWMFTGSGYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLPDFKEELDQWF  1251

Query  1157  KNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYI  1216
             KN TS   DL  +  IN + +++Q E++RL E  K LN+S I+L+++G YE Y+KWPWY+
Sbjct  1252  KNQTSVAPDL-SLDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYV  1310

Query  1217  WLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK  1266
             WL  + GL  + M+ ++                CG CC       E V+K
Sbjct  1311  WL--LIGLAGVAMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQELVIK  1358


>sp|Q8V436|SPIKE_CVBLU Spike glycoprotein OS=Bovine coronavirus 
(strain 98TXSF-110-LUN) OX=233264 GN=S PE=3 SV=1
Length=1363

 Score = 985 bits (2546),  Expect = 0.0, Method: Composition-based stats.
 Identities = 371/1370 (27%), Positives = 583/1370 (43%), Gaps = 145/1370 (11%)

Query  9     PLVSSQCVNLTTRTQLPPAYTNSFTRGVYYP-DKVFRSSVLHSTQDLFLPFFSNVTWFHA  67
               VS   V+    +        +   G YY  D+V+ ++ L      + P  ++ + +  
Sbjct  22    TTVSINDVDTGVPSISTDTVDVTKGLGTYYVLDRVYLNTTLLLNG--YYP--TSGSTYRN  77

Query  68    IHVSGTN--GTKRFDNPVL-PFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNAT  124
             + + GT    T  F  P L  F +G+ FA  + + +I+  +  +   + T     VN + 
Sbjct  78    MALKGTLLLSTLWFKPPFLSDFTNGI-FAKVKNTKVIKDGVMYSEFPAITIGSTFVNTSY  136

Query  125   NVV-----------------IKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCT  167
             +VV                 I VC++  C  P      + N  +     +   +   +C 
Sbjct  137   SVVVQPHTTILGNKLQGFLEISVCQYTMCEYP--NTICNPNLGNRRVELWHWDTGVVSCL  194

Query  168   FEY-----VSQPFLM-----DLEGKQGNFKN---LREFVFKNIDGYFKIYSKHTPINLVR  214
             ++      V+  +L      +       F +   + +F+F    G    +    P+    
Sbjct  195   YKRNFTYDVNADYLYFHFYQEGGTFYAYFTDTGVVTKFLFNVYLGTVLSHYYVMPLTCNS  254

Query  215   DLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRT  274
              L   +          +           A+        +      + A +  V  L   T
Sbjct  255   ALTLEYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELNGYT  314

Query  275   FLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNIT-  333
                  +    I +  DC ++     K        E+  +   NF +    S ++  + T 
Sbjct  315   VQPIADVYRRIPNLPDCNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQADSFTC  374

Query  334   ---------NLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNS-ASFSTFKC---Y  380
                       +C      +           +  +      Y   +N     +   C   Y
Sbjct  375   NNIDAAKIYGMCFSSITIDKFAIP---NGRKVDLQLGNLGYLQSFNYRIDTTATSCQLYY  431

Query  381   GVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYN-------YKLPDDFTGCV  433
              +    ++   F     +       E     P   G   D++       +K P +F  C 
Sbjct  432   NLPAANVSVSRFNPSTWNR-RFGFTEQSVFKPQPAGVFTDHDVVYAQHCFKAPTNFCPCK  490

Query  434   I-------------AWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDI-----STEIYQA  475
             +             A    +         NYL      +              +T  Y+ 
Sbjct  491   LDGSLCVGNGPGIDAGYKTSGIGTCPAGTNYLT-CHNAAQCDCLCTPDPITSKATGPYKC  549

Query  476   GSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPY--------------RVVVLSFELLHA-  520
               T      G +C            N    QP               R  + +  +LH  
Sbjct  550   PQTKYLVGIGEHCSGLAIKSDHCGGNPCTCQPQAFLGWSVDSCLQGDRCNIFANFILHDV  609

Query  521   -PATVCGP---KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDA  575
                T C     K +T+++   CVN++  G+TG G+  E N  +   +Q    D       
Sbjct  610   NSGTTCSTDLQKSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYG  669

Query  576   VRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV  635
              RD  T     I  C  G VS        S++ A+L++++ C  V     + QL P    
Sbjct  670   FRDYLTNRTFMIRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI---  724

Query  636   YSTGSNVFQTRAGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSII  693
                  N F +  GC++ A++  +S    CD+ +G+G C  Y T     RR+R   +    
Sbjct  725   -----NYFDSYLGCVVNADNSTSSVVQTCDLTVGSGYCVDYST----KRRSRRSITTGYR  775

Query  694   AYTMSLGAENSVAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDST  747
                      NSV  S         I IP+ FTI    E +  S  K ++DC+ ++CGD  
Sbjct  776   FTNFEPFTVNSVNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYA  835

Query  748   ECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN-----  801
              C + L++YGSFC  +N  LT +    D    +V  + +  +  +  +KD   FN     
Sbjct  836   ACKSQLVEYGSFCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDIN  895

Query  802   FSQILP----DPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNG  857
             FS +L     D +K S RS IEDLLF+KV L+D GF++ Y +C G    RDLIC Q +NG
Sbjct  896   FSPVLGCLGSDCNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNG  955

Query  858   LTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLY  917
             + VLPPLL++  I+ YT A  + ++   W+  AG    +PF + + YR NGIGVT +VL 
Sbjct  956   IKVLPPLLSENQISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLS  1011

Query  918   ENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVL  977
             +NQKLIAN FN+A+G IQ+   +T SAL K+Q VVN NA+ LN L++QLS+ FGAISS L
Sbjct  1012  QNQKLIANAFNNALGAIQEGFDATNSALVKIQAVVNANAETLNNLLQQLSNRFGAISSSL  1071

Query  978   NDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQS  1037
              +ILSRLD +EA+ QIDRLI GRL +L  YV+QQL  +  ++ SA  A  K++ECV  QS
Sbjct  1072  QEILSRLDALEAQAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQS  1131

Query  1038  KRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHD-GKAHFPREGVFV  1096
              R++FCG G H++S  Q+AP+G+ F+H +YVP +      +P +C   G+   P+ G FV
Sbjct  1132  SRINFCGNGNHIISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGGRGIAPKSGYFV  1191

Query  1097  SNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYF  1156
             +    W  T   +Y P+ IT +N  V   C V      + + +   P L  FKEELD++F
Sbjct  1192  NVNNTWMFTGSGYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLPDFKEELDQWF  1251

Query  1157  KNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYI  1216
             KN TS   DL  +  IN + +++Q E++RL E  K LN+S I+L+++G YE Y+KWPWY+
Sbjct  1252  KNQTSVAPDL-SLDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYV  1310

Query  1217  WLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK  1266
             WL  + G   + M+ ++                CG CC       E V+K
Sbjct  1311  WL--LIGFAGVAMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQELVIK  1358


>sp|Q9QAQ8|SPIKE_CVBOK Spike glycoprotein OS=Bovine coronavirus 
(strain OK-0514) OX=231432 GN=S PE=3 SV=1
Length=1363

 Score = 984 bits (2544),  Expect = 0.0, Method: Composition-based stats.
 Identities = 371/1376 (27%), Positives = 588/1376 (43%), Gaps = 157/1376 (11%)

Query  9     PLVSSQCVNLTTRTQLPPAYTNSFTRGVYYP-DKVFRSSVLHSTQDLFLPFFSNVTWFHA  67
               VS   V+    +        +   G YY  D+V+ ++ L      + P  ++ + +  
Sbjct  22    TTVSINDVDTGVPSISTDTVDVTNGLGTYYVLDRVYLNTTLLLNG--YYP--TSGSTYRN  77

Query  68    IHVSGTN--GTKRFDNPVL-PFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNAT  124
             + + GT    T  F  P L  F +G+ FA  + + +I+  +  +   + T     VN + 
Sbjct  78    MALKGTLLLSTLWFKPPFLSDFTNGI-FAKVKNTKVIKDGVKYSEFPAITIGSTFVNTSY  136

Query  125   NVV-----------------IKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCT  167
             +VV                 I VC++  C  P      + N  +     +   +   +C 
Sbjct  137   SVVVQPHTTNLDNKLQGLLEISVCQYTMCEYP--NTICNPNLGNQRVELWHWDTGVVSCL  194

Query  168   FEY-----VSQPFLM-----DLEGKQGNFKN---LREFVFKNIDGYFKIYSKHTPINLVR  214
             ++      V+  +L      +       F +   + +F+F    G    +    P+    
Sbjct  195   YKRNFTYDVNADYLYFHFYQEGGTFYAYFTDTGVVTKFLFNVYLGTVLSHYYVMPLTCNS  254

Query  215   DLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRT  274
              +   +          +           A+        +      + A +  V  L   T
Sbjct  255   AMTLEYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELNGYT  314

Query  275   FLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNIT-  333
                  +    I +  DC ++     K        E+  +   NF +    S ++  + T 
Sbjct  315   VQPIADVYRRIPNLPDCNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQADSFTC  374

Query  334   ---------NLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNS-ASFSTFKC---Y  380
                       +C      +           +  +      Y   +N     +   C   Y
Sbjct  375   NNIDAAKIYGMCFSSITIDKFAIP---NGRKVDLQLGNLGYLQSFNYRIDTTATSCQLYY  431

Query  381   GVSPTKLNDLCFT-NVYADSFVIRGDEVRQIAPGQTGKIADYN-------YKLPDDFTGC  432
              +    ++   F  +++   F     E     P   G   D++       +K P +F  C
Sbjct  432   NLPAANVSVSRFNPSIWNRRFGF--TEQSVFKPQPAGVFTDHDVVYAQHCFKAPTNFCPC  489

Query  433   VI-------------AWNSNNLDSKVGGNYNYL------------------------YRL  455
              +             A   N          NYL                        Y+ 
Sbjct  490   KLDGSLCVGSGSGIDAGYKNTGIGTCPAGTNYLTCHNAAQCGCLCTPDPITSKATGPYKC  549

Query  456   FRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSF  515
              +   L       S    ++     N         P    G+   + +     R  + + 
Sbjct  550   PQTKYLVGIGEHCSGLAIKSDYCGGNPCSC----RPQAFLGWSVDSCLQGD--RCNIFAN  603

Query  516   ELLHA--PATVCGP---KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDI  569
              +LH     T C     K +T+++   CVN++  G+TG G+  E N  +   +Q    D 
Sbjct  604   FILHDVNSGTTCSTDLQKSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDS  663

Query  570   ADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQL  629
                    RD  T     I  C  G VS        S++ A+L++++ C  V     + QL
Sbjct  664   NGNLYGFRDYLTNRTFMIRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQL  721

Query  630   TPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSV  687
              P         N F +  GC++ A++  +S    CD+ +G+G C  Y T     RR+R  
Sbjct  722   QPI--------NYFDSYLGCVVNADNSTSSVVQTCDLTVGSGYCVDYST----KRRSRRS  769

Query  688   ASQSIIAYTMSLGAENSVAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMY  741
              +             NSV  S         I IP+ FTI    E +  S  K ++DC+ +
Sbjct  770   ITTGYRFTNFEPFTVNSVNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAF  829

Query  742   ICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGF  800
             +CGD   C + L++YGSFC  +N  LT +    D    +V  + +  +  +  +KD   F
Sbjct  830   VCGDYAACKSQLVEYGSFCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNF  889

Query  801   N-----FSQILP----DPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLIC  851
             N     FS +L     D +K S RS IEDLLF+KV L+D GF++ Y +C G    RDLIC
Sbjct  890   NVDDINFSPVLGCLGSDCNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLIC  949

Query  852   AQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGV  911
              Q +NG+ VLPPLL++  I+ YT A  + ++   W+  AG    +PF + + YR NGIGV
Sbjct  950   VQSYNGIKVLPPLLSENQISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGV  1005

Query  912   TQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFG  971
             T +VL +NQKLIAN FN+A+G IQ+   +T SAL K+Q VVN NA+ALN L++QLS+ FG
Sbjct  1006  TMDVLSQNQKLIANAFNNALGAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFG  1065

Query  972   AISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSE  1031
             AISS L +ILSRLD +EA+ QIDRLI GRL +L  YV+QQL  +  ++ SA  A  K++E
Sbjct  1066  AISSSLQEILSRLDALEAQAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNE  1125

Query  1032  CVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFP  1090
             CV  QS R++FCG G H++S  Q+AP+G+ F+H +YVP +      +P +C  G +   P
Sbjct  1126  CVKSQSSRINFCGNGNHIISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAP  1185

Query  1091  REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKE  1150
             + G FV+    W  T   +Y P+ IT +N  V   C V      + + +   P L  FKE
Sbjct  1186  KSGYFVNVNNTWMFTGSGYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLPDFKE  1245

Query  1151  ELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYI  1210
             ELD++FKN TS   DL  +  IN + +++Q E++RL E  K LN+S I+L+++G YE Y+
Sbjct  1246  ELDQWFKNQTSVAPDL-SLDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYV  1304

Query  1211  KWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK  1266
             KWPWY+WL  + G   + M+ ++                CG CC       E V+K
Sbjct  1305  KWPWYVWL--LIGFAGVAMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQELVIK  1358


>sp|P36334|SPIKE_CVHOC Spike glycoprotein OS=Human coronavirus 
OC43 OX=31631 GN=S PE=1 SV=1
Length=1353

 Score = 963 bits (2488),  Expect = 0.0, Method: Composition-based stats.
 Identities = 360/1375 (26%), Positives = 577/1375 (42%), Gaps = 149/1375 (11%)

Query  3     VFLVLLPLVSSQCVNLTTRTQLPPAYTNS----FTRGVYYP-DKVFRSSVLHSTQDLFLP  57
              F V+  L  +        T  PP  T++       G YY  D+V+ ++ L      + P
Sbjct  12    AFAVIGDLKCTSDNINDKDTGPPPISTDTVDVTNGLGTYYVLDRVYLNTTLFLNG--YYP  69

Query  58    FFSNVTWFHAIHVSGTN--GTKRFDNPVL-PFNDGVYFASTEKSNIIRGWIFGTTLDSKT  114
               ++ + +  + + G+       F  P L  F +G+ FA  + + +I+  +  +   + T
Sbjct  70    --TSGSTYRNMALKGSVLLSRLWFKPPFLSDFINGI-FAKVKNTKVIKDRVMYSEFPAIT  126

Query  115   QSLLIVNNATNVVI---------------------KVCEFQFCNDPFLGVYYHKNNKSWM  153
                  VN + +VV+                      VC++  C  P      H N  +  
Sbjct  127   IGSTFVNTSYSVVVQPRTINSTQDGDNKLQGLLEVSVCQYNMCEYPQT--ICHPNLGNHR  184

Query  154   ESEFRV------YSSANNCTF----EYVSQPFLMDLEGKQGNFKN---LREFVFKNIDGY  200
             +  + +           N T+    +Y+   F  +       F +   + +F+F    G 
Sbjct  185   KELWHLDTGVVSCLYKRNFTYDVNADYLYFHFYQEGGTFYAYFTDTGVVTKFLFNVYLGM  244

Query  201   FKIYSKHTPINLVRDLPQGFSAL-----EPLVDLPIGINITRFQTLLALHRSYLTPGDSS  255
                +    P+     L   +        + L+       I   +  ++   S +      
Sbjct  245   ALSHYYVMPLTCNSKLTLEYWVTPLTSRQYLLAFNQDGIIFNAEDCMSDFMSEI-----K  299

Query  256   SGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQT  315
                 + A    V  L   T     +      +  +C ++     K        E+  +  
Sbjct  300   CKTQSIAPPTGVYELNGYTVQPIADVYRRKPNLPNCNIEAWLNDKSVPSPLNWERKTFSN  359

Query  316   SNFRVQPTESIVRFPNIT----------NLCPFGEVFNATRFASVYAWNRKRISNCVADY  365
              NF +    S ++  + T           +C      +           +  +      Y
Sbjct  360   CNFNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIP---NGRKVDLQLGNLGY  416

Query  366   SVLYNS-ASFSTFKC---YGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADY  421
                +N     +   C   Y +    ++   F     +       E     P   G + ++
Sbjct  417   LQSFNYRIDTTATSCQLYYNLPAANVSVSRFNPSTWNK-RFGFIEDSVFKPRPAGVLTNH  475

Query  422   N-------YKLPDDFTGCVI-----------------------AWNSNNLDSKVGGNYNY  451
             +       +K P +F  C +                           +NL +     +  
Sbjct  476   DVVYAQHCFKAPKNFCPCKLNGSCVGSGPGKNNGIGTCPAGTNYLTCDNLCTPDPITFTG  535

Query  452   LYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVV  511
              Y+  +  +L       S    ++     N          L         G     +   
Sbjct  536   TYKCPQTKSLVGIGEHCSGLAVKSDYCGGNSCT-CRPQAFLGWSADSCLQGDKCNIFANF  594

Query  512   VLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIA  570
             +L         +    K +T+++   CVN++  G+ G G+  E N  +   +Q    D  
Sbjct  595   ILHDVNSGLTCSTDLQKANTDIILGVCVNYDLYGILGQGIFVEVNATYYNSWQNLLYDSN  654

Query  571   DTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLT  630
                   RD        I  C  G VS        S++ A+L++++ C  V       QL 
Sbjct  655   GNLYGFRDYIINRTFMIRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNSLTRQLQ  712

Query  631   PTWRVYSTGSNVFQTRAGCLIGAEHVN--NSYECDIPIGAGICASYQTQTNSPRRARSVA  688
             P         N F +  GC++ A +    +   CD+ +G+G C  Y       RR+R   
Sbjct  713   PI--------NYFDSYLGCVVNAYNSTAISVQTCDLTVGSGYCVDYSKN----RRSRGAI  760

Query  689   SQSIIAYTMSLGAENSVAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYI  742
             +             NSV  S         I IP+ FTI    E +  S  K ++DC  ++
Sbjct  761   TTGYRFTNFEPFTVNSVNDSLEPVGGLYEIQIPSEFTIGNMVEFIQTSSPKVTIDCAAFV  820

Query  743   CGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN  801
             CGD   C + L++YGSFC  +N  LT +    D    +V  + +  +  +  +KD   FN
Sbjct  821   CGDYAACKSQLVEYGSFCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFN  880

Query  802   -----FSQILP----DPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICA  852
                  FS +L     + SK S RS IEDLLF+KV L+D GF++ Y +C G    RDLIC 
Sbjct  881   VDDINFSPVLGCLGSECSKASSRSAIEDLLFDKVKLSDVGFVEAYNNCTGGAEIRDLICV  940

Query  853   QKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVT  912
             Q + G+ VLPPLL++  I+ YT A  + ++   WT  AG    +PF + + YR NG+GVT
Sbjct  941   QSYKGIKVLPPLLSENQISGYTLAATSASLFPPWTAAAG----VPFYLNVQYRINGLGVT  996

Query  913   QNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGA  972
              +VL +NQKLIAN FN+A+  IQ+   +T SAL K+Q VVN NA+ALN L++QLS+ FGA
Sbjct  997   MDVLSQNQKLIANAFNNALYAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGA  1056

Query  973   ISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSEC  1032
             IS+ L +ILSRLD +EAE QIDRLI GRL +L  YV+QQL  +  ++ SA  A  K++EC
Sbjct  1057  ISASLQEILSRLDALEAEAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNEC  1116

Query  1033  VLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPR  1091
             V  QS R++FCG G H++S  Q+AP+G+ F+H +YVP +      +P +C  G +   P+
Sbjct  1117  VKSQSSRINFCGNGNHIISLVQNAPYGLYFIHFSYVPTKYVTARVSPGLCIAGDRGIAPK  1176

Query  1092  EGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEE  1151
              G FV+    W  T   +Y P+ IT +N  V   C V        + +   P L  FKEE
Sbjct  1177  SGYFVNVNNTWMYTGSGYYYPEPITENNVVVMSTCAVNYTKAPYVMLNTSIPNLPDFKEE  1236

Query  1152  LDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIK  1211
             LD++FKN TS   DL  +  IN + +++Q E++RL E  K LN+S I+L+++G YE Y+K
Sbjct  1237  LDQWFKNQTSVAPDL-SLDYINVTFLDLQVEMNRLQEAIKVLNQSYINLKDIGTYEYYVK  1295

Query  1212  WPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK  1266
             WPWY+WL  +  L  + M+ ++                CG CC       E V+K
Sbjct  1296  WPWYVWL--LICLAGVAMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGYQELVIK  1348


>sp|P25194|SPIKE_CVBV Spike glycoprotein OS=Bovine coronavirus 
(strain vaccine) OX=11134 GN=S PE=3 SV=1
Length=1363

 Score = 924 bits (2388),  Expect = 0.0, Method: Composition-based stats.
 Identities = 302/870 (35%), Positives = 444/870 (51%), Gaps = 56/870 (6%)

Query  422   NYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCN  481
             NY    +   C      + + SK  G     Y+  +   L       S    ++     N
Sbjct  520   NYLTCHNAAQCDCLCTPDPITSKSTGP----YKCPQTKYLVGIGEHCSGLAIKSDYCGGN  575

Query  482   GVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHA--PATVCGP---KKSTNLVKN  536
                      P    G+   + +     R  + +  +LH     T C     K +T+++  
Sbjct  576   PC----TCQPQAFLGWSVDSCLQGD--RCNIFANFILHDVNSGTTCSTDLQKSNTDIILG  629

Query  537   KCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGV  595
              CVN++  G+TG G+  E N  +   +Q    D        RD  T     I  C  G V
Sbjct  630   VCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFMIRSCYSGRV  689

Query  596   SVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEH  655
             S        S++ A+L++++ C  V     + QL P         N F +  GC++ A++
Sbjct  690   SAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSYLGCVVNADN  739

Query  656   VNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNN---  710
               +S    CD+ +G+G C  Y T     RR+R   +             NSV  S     
Sbjct  740   STSSVVQTCDLTVGSGYCVDYST----KRRSRRAITTGYRFTNFEPFTVNSVNDSLEPVG  795

Query  711   ---SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRAL  767
                 I IP+ FTI    E +  S  K ++DC+ ++CGD   C + L++YGSFC  +N  L
Sbjct  796   GLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGSFCDNINAIL  855

Query  768   TGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN-----FSQILP----DPSKPSKRSF  817
             T +    D    +V  + +  +  +  +KD   FN     FS +L     D +K S RS 
Sbjct  856   TEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSDCNKVSSRSA  915

Query  818   IEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSAL  877
             IEDLLF+KV L+D GF++ Y +C G    RDLIC Q +NG+ VLPPLL+   I+ YT A 
Sbjct  916   IEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSVNQISGYTLAA  975

Query  878   LAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDS  937
              + ++   W+  AG    +PF + + YR NGIGVT +VL +NQKLIAN FN+A+  IQ+ 
Sbjct  976   TSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFNNALDAIQEG  1031

Query  938   LSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLI  997
               +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +EA+ QIDRLI
Sbjct  1032  FDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALEAQAQIDRLI  1091

Query  998   TGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAP  1057
              GRL +L  YV+QQL  +  ++ SA  A  K++ECV  QS R++FCG G H++S  Q+AP
Sbjct  1092  NGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNHIISLVQNAP  1151

Query  1058  HGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQRNFYEPQIIT  1116
             +G+ F+H +YVP +      +P +C  G +   P+ G FV+    W  T   +Y P+ IT
Sbjct  1152  YGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGSGYYYPEPIT  1211

Query  1117  TDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASV  1176
              +N  V   C V      + + +   P L  FKEELD++FKN TS   DL  +  IN + 
Sbjct  1212  GNNVVVMSTCAVNYTKAPDVMLNISTPNLHDFKEELDQWFKNQTSVAPDL-SLDYINVTF  1270

Query  1177  VNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCC  1236
             +++Q E++RL E  K LN+S I+L+++G YE Y+KWPWY+WL  + G   + M+ ++   
Sbjct  1271  LDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGVAMLVLLFFI  1328

Query  1237  MTSCCSCLKGCCSCGSCCKFDEDDSEPVLK  1266
                          CG CC       E V+K
Sbjct  1329  CCCTGCGTSCFKICGGCCDDYTGHQELVIK  1358


 Score = 365 bits (936),  Expect = 1e-104, Method: Composition-based stats.
 Identities = 113/564 (20%), Positives = 200/564 (35%), Gaps = 76/564 (13%)

Query  9    PLVSSQCVNLTTRTQLPPAYTNSFTRGVYYP-DKVFRSSVLHSTQDLFLPFFSNVTWFHA  67
              VS   V+    +        +   G YY  D+V+ ++ L      + P  ++ + +  
Sbjct  22   TTVSINDVDTGAPSISTDTVDVTNGLGTYYVLDRVYLNTTLLLNG--YYP--TSGSTYRN  77

Query  68   IHVSGTN--GTKRFDNPVL-PFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNAT  124
            + + GT       F  P L  F +G+ FA  + + +I+  +  +   + T     VN + 
Sbjct  78   MALKGTLLLSRLWFKPPFLSDFINGI-FAKVKNTKVIKKGVMYSEFPAITIGSTFVNTSY  136

Query  125  NVV-----------------IKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCT  167
            +VV                 I VC++  C  P      H N  +     +   +   +C 
Sbjct  137  SVVVQPHTTNLDNKLQGLLEISVCQYTMCEYPHT--ICHPNLGNQRVELWHWDTGVVSCL  194

Query  168  FEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLV  227
            ++   + F  D+            F F    G F  Y   T +             + L 
Sbjct  195  YK---RNFTYDVNADYLY------FHFYQEGGTFYAYFTDTGV-----------VTKFLF  234

Query  228  DLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITD  287
            ++ +G  ++ +         Y+ P    S  T     Y+V  L  + +LL +N++G I +
Sbjct  235  NVYLGTVLSHY---------YVLPLTCYSAMT---LEYWVTPLTSKQYLLAFNQDGVIFN  282

Query  288  AVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVR-FPNITNLCPFGEVFNATR  346
            AVDC  D +SE KC   S     G+Y+ + + VQP   + R  PN+ + C      N   
Sbjct  283  AVDCKSDFMSEIKCKTLSIAPSTGVYELNGYTVQPIADVYRRIPNLPD-CNIEAWLNDKS  341

Query  347  FASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDE  406
              S   W RK  SNC  + S L +     +F C  +   K+  +CF+++  D F I    
Sbjct  342  VPSPLNWERKTFSNCNFNMSSLMSFIQADSFTCNNIEAAKIYGMCFSSITIDKFAIPNGR  401

Query  407  VRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSN----NLDSKVGGNYNYLYRLFRKSNLK  462
               +  G  G +  +NY++      C + +N      ++       +N  +    +S  K
Sbjct  402  KVDLQLGNLGYLQSFNYRIDTTAASCQLYYNLPAANVSVSRFNPSTWNRRFGFTEQSVFK  461

Query  463  PFERDISTEIYQAGSTPCNGVEGFNCYFPLQS----------YGFQPTNGVGYQPYRVVV  512
            P    + T      +  C       C   L                  +G+G  P     
Sbjct  462  PQPVGVFTHHDVVYAQHCFKAPTNFCPCKLDGSLCVGNGPGIDAGYKNSGIGTCPAGTNY  521

Query  513  LSFELLHAPATVCGPKKSTNLVKN  536
            L+         +C P   T+    
Sbjct  522  LTCHNAAQCDCLCTPDPITSKSTG  545


>sp|Q91A26|SPIKE_CVBEN Spike glycoprotein OS=Bovine coronavirus 
(strain 98TXSF-110-ENT) OX=233262 GN=S PE=3 SV=1
Length=1363

 Score = 924 bits (2387),  Expect = 0.0, Method: Composition-based stats.
 Identities = 303/870 (35%), Positives = 446/870 (51%), Gaps = 56/870 (6%)

Query  422   NYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCN  481
             NY    +   C      + + SK  G     Y+  +   L       S    ++     N
Sbjct  520   NYLTCHNAAQCDCLCTPDPITSKATGP----YKCPQTKYLVGIGEHCSGLAIKSDHCGGN  575

Query  482   GVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHA--PATVCGP---KKSTNLVKN  536
                      P    G+   + +     R  + +  +LH     T C     K +T+++  
Sbjct  576   PC----TCQPQAFLGWSVDSCLQGD--RCNIFANFILHDVNSGTTCSTDLQKSNTDIILG  629

Query  537   KCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGV  595
              CVN++  G+TG G+  E N  +   +Q    D        RD  T     I  C  G V
Sbjct  630   VCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFMIRSCYSGRV  689

Query  596   SVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEH  655
             S        S++ A+L++++ C  V     + QL P         N F +  GC++ A++
Sbjct  690   SAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSYLGCVVNADN  739

Query  656   VNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNN---  710
               +S    CD+ +G+G C  Y T     RR+R   +             NSV  S     
Sbjct  740   STSSVVQTCDLTVGSGYCVDYST----KRRSRRSITTGYRFTNFEPFTVNSVNDSLEPVG  795

Query  711   ---SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRAL  767
                 I IP+ FTI    E +  S  K ++DC+ ++CGD   C + L++YGSFC  +N  L
Sbjct  796   GLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGSFCDNINAIL  855

Query  768   TGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN-----FSQILP----DPSKPSKRSF  817
             T +    D    +V  + +  +  +  +KD   FN     FS +L     D +K S RS 
Sbjct  856   TEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSDCNKVSSRSA  915

Query  818   IEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSAL  877
             IEDLLF+KV L+D GF++ Y +C G    RDLIC Q +NG+ VLPPLL++  I+ YT A 
Sbjct  916   IEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSENQISGYTLAA  975

Query  878   LAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDS  937
              + ++   W+  AG    +PF + + YR NGIGVT +VL +NQKLIAN FN+A+G IQ+ 
Sbjct  976   TSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFNNALGAIQEG  1031

Query  938   LSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLI  997
               +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +EA+ QIDRLI
Sbjct  1032  FDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALEAQAQIDRLI  1091

Query  998   TGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAP  1057
              GRL +L  YV+QQL  +  ++ SA  A  K++ECV  QS R++FCG G H++S  Q+AP
Sbjct  1092  NGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNHIISLVQNAP  1151

Query  1058  HGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQRNFYEPQIIT  1116
             +G+ F+H +YVP +      +P +C  G +   P+ G FV+    W  T   +Y P+ IT
Sbjct  1152  YGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGSGYYYPEPIT  1211

Query  1117  TDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASV  1176
              +N  V   C V      + + +   P L  FKEELD++FKN TS   DL  +  IN + 
Sbjct  1212  GNNVVVMSTCAVNYTKAPDVMLNISTPNLPYFKEELDQWFKNQTSVAPDL-SLDYINVTF  1270

Query  1177  VNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCC  1236
             +++Q E++RL E  K LN+S I+L+++G YE Y+KWPWY+WL  + G   + M+ ++   
Sbjct  1271  LDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGVAMLVLLFFI  1328

Query  1237  MTSCCSCLKGCCSCGSCCKFDEDDSEPVLK  1266
                          CG CC       E V+K
Sbjct  1329  CCCTGCGTSCFKKCGGCCDDYTGHQELVIK  1358


 Score = 368 bits (945),  Expect = 9e-106, Method: Composition-based stats.
 Identities = 109/543 (20%), Positives = 196/543 (36%), Gaps = 66/543 (12%)

Query  9    PLVSSQCVNLTTRTQLPPAYTNSFTRGVYYP-DKVFRSSVLHSTQDLFLPFFSNVTWFHA  67
              VS   V+    +        +   G YY  D+V+ ++ L      + P  ++ + +  
Sbjct  22   TTVSINDVDTGVPSISTDTVDVTNGLGTYYVLDRVYLNTTLLLNG--YYP--TSGSTYRN  77

Query  68   IHVSGTN--GTKRFDNPVL-PFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNAT  124
            + + GT    T  F  P L  F +G+ FA  + + +I+  +  +   + T     VN + 
Sbjct  78   MALKGTLLLSTLWFKPPFLSDFTNGI-FAKVKNTKVIKDGVMYSEFPAITIGSTFVNTSY  136

Query  125  NVV-----------------IKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCT  167
            +VV                 I VC++  C  P      + N  +     +   +   +C 
Sbjct  137  SVVVQPHTTILGNKLQGFLEISVCQYTMCEYP--NTICNPNLGNQRVELWHWDTGVVSCL  194

Query  168  FEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLV  227
            ++   + F  D+            F F    G F  Y   T +             + L 
Sbjct  195  YK---RNFTYDVNADYLY------FHFYQEGGTFYAYFTDTGV-----------VTKFLF  234

Query  228  DLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITD  287
            ++ +G  ++ +         Y+ P   +S  T     Y+V  L  + +LL +N++G I +
Sbjct  235  NVYLGTVLSHY---------YVMPLTCNSALT---LEYWVTPLTSKQYLLAFNQDGVIFN  282

Query  288  AVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVR-FPNITNLCPFGEVFNATR  346
            AVDC  D +SE KC   S     G+Y+ + + VQP   + R  PN+ + C      N   
Sbjct  283  AVDCKSDFMSEIKCKTLSIAPSTGVYELNGYTVQPIADVYRRIPNLPD-CNIEAWLNDKS  341

Query  347  FASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDE  406
              S   W RK  SNC  + S L +     +F C  +   K+  +CF+++  D F I    
Sbjct  342  VPSPLNWERKTFSNCNFNMSSLMSFIQAYSFTCNNIDAAKIYGMCFSSITIDKFAIPNGR  401

Query  407  VRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSN----NLDSKVGGNYNYLYRLFRKSNLK  462
               +  G  G +  +NY++    T C + +N      ++       +N  +    +S  K
Sbjct  402  KVDLQLGNLGYLQSFNYRIDTTATSCQLYYNLPAANVSVSRFNPSTWNRRFGFTEQSVFK  461

Query  463  PFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPA  522
            P    + T+     +  C       C   L               Y+   +         
Sbjct  462  PQPAGVFTDHDVVYAQHCFKASTNFCPCKLDGSLCVGNGPGIDAGYKTSGIGTCPAGTNY  521

Query  523  TVC  525
              C
Sbjct  522  LTC  524


>sp|P15777|SPIKE_CVBM Spike glycoprotein OS=Bovine coronavirus 
(strain Mebus) OX=11132 GN=S PE=3 SV=1
Length=1363

 Score = 919 bits (2374),  Expect = 0.0, Method: Composition-based stats.
 Identities = 301/870 (35%), Positives = 443/870 (51%), Gaps = 56/870 (6%)

Query  422   NYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCN  481
             NY    +   C      + + SK  G     Y+  +   L       S    ++     N
Sbjct  520   NYLTCHNAAQCNCLCTPDPITSKSTGP----YKCPQTKYLVGIGEHCSGLAIKSDYCGGN  575

Query  482   GVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHA--PATVCGP---KKSTNLVKN  536
                      P    G+   + +     R  + +  +LH     T C     K +T+++  
Sbjct  576   PC----TCQPQAFLGWSVDSCLQGD--RCNIFANFILHDVNSGTTCSTDLQKSNTDIILG  629

Query  537   KCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGV  595
              CVN++  G+TG G+  E N  +   +Q    D        RD  T     I  C  G V
Sbjct  630   VCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFMIRSCYSGRV  689

Query  596   SVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEH  655
             S        S++ A+L++++ C  V     + QL P         N F +  GC++ A++
Sbjct  690   SAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSYLGCVVNADN  739

Query  656   VNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNN---  710
               +S    CD+ +G+G C  Y T     RR+R   +      T      NSV  S     
Sbjct  740   STSSVVQTCDLTVGSGYCVDYST----KRRSRRAITTGYRFTTFEPFTVNSVNDSLEPVG  795

Query  711   ---SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRAL  767
                 I IP+ FTI    E +  S  K ++DC+ ++CGD   C + L++YGSFC  +N  L
Sbjct  796   GLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGSFCDNINAIL  855

Query  768   TGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN-----FSQILP----DPSKPSKRSF  817
             T +    D    +V  + +  +  +  +KD   FN     FS +L     D +K S RS 
Sbjct  856   TEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSDCNKVSSRSA  915

Query  818   IEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSAL  877
             IEDLLF+KV L+D GF++ Y +C G    RDLIC Q +NG+ VLPPLL+   I+ YT A 
Sbjct  916   IEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSVNQISGYTLAA  975

Query  878   LAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDS  937
              + ++    +   G    +PF + + YR NGIGVT +VL +NQKLIAN FN+A+  IQ+ 
Sbjct  976   TSASLFPPLSAAVG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFNNALDAIQEG  1031

Query  938   LSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLI  997
               +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +EA+ QIDRLI
Sbjct  1032  FDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALEAQAQIDRLI  1091

Query  998   TGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAP  1057
              GRL +L  YV+QQL  +  ++ SA  A  K++ECV  QS R++FCG G H++S  Q+AP
Sbjct  1092  NGRLTALNVYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNHIISLVQNAP  1151

Query  1058  HGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQRNFYEPQIIT  1116
             +G+ F+H +YVP +      +P +C  G +   P+ G FV+    W  T   +Y P+ IT
Sbjct  1152  YGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGSGYYYPEPIT  1211

Query  1117  TDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASV  1176
              +N  V   C V      + + +   P L  FKEELD++FKN TS   DL  +  IN + 
Sbjct  1212  GNNVVVMSTCAVNYTKAPDVMLNISTPNLHDFKEELDQWFKNQTSVAPDL-SLDYINVTF  1270

Query  1177  VNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCC  1236
             +++Q E++RL E  K LN+S I+L+++G YE Y+KWPWY+WL  + G   + M+ ++   
Sbjct  1271  LDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGVAMLVLLFFI  1328

Query  1237  MTSCCSCLKGCCSCGSCCKFDEDDSEPVLK  1266
                          CG CC       E V+K
Sbjct  1329  CCCTGCGTSCFKICGGCCDDYTGHQELVIK  1358


 Score = 367 bits (942),  Expect = 2e-105, Method: Composition-based stats.
 Identities = 117/583 (20%), Positives = 209/583 (36%), Gaps = 88/583 (15%)

Query  2    FVFLVLLPLVSSQCVNLTTRTQL-------PPAYTN-----SFTRGVYYP-DKVFRSSVL  48
             + L+ LP+  +   +L   T          P+ +      +   G YY  D+V+ ++ L
Sbjct  3    LILLISLPMAFAVIGDLKCTTVSINDVDTGAPSISTDIVDVTNGLGTYYVLDRVYLNTTL  62

Query  49   HSTQDLFLPFFSNVTWFHAIHVSGTN--GTKRFDNPVL-PFNDGVYFASTEKSNIIRGWI  105
                  + P  ++ + +  + + GT       F  P L  F +G+ FA  + + +I+  +
Sbjct  63   LLNG--YYP--TSGSTYRNMALKGTLLLSRLWFKPPFLSDFINGI-FAKVKNTKVIKKGV  117

Query  106  FGTTLDSKTQSLLIVNNATNVV-----------------IKVCEFQFCNDPFLGVYYHKN  148
              +   + T     VN + +VV                 I VC++  C  P      H N
Sbjct  118  MYSEFPAITIGSTFVNTSYSVVVQPHTTNLDNKLQGLLEISVCQYTMCEYPHT--ICHPN  175

Query  149  NKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHT  208
              +     +   +   +C ++   + F  D+            F F    G F  Y   T
Sbjct  176  LGNKRVELWHWDTGVVSCLYK---RNFTYDVNADYLY------FHFYQEGGTFYAYFTDT  226

Query  209  PINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVG  268
             +             + L ++ +G  ++ +         Y+ P   SS  T     Y+V 
Sbjct  227  GV-----------VTKFLFNVYLGTVLSHY---------YVLPLTCSSAMT---LEYWVT  263

Query  269  YLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVR  328
             L  + +LL +N++G I +AVDC  D +SE KC   S     G+Y+ + + VQP   + R
Sbjct  264  PLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELNGYTVQPIADVYR  323

Query  329  -FPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKL  387
              PN+ + C      N     S   W RK  SNC  + S L +     +F C  +   K+
Sbjct  324  RIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQADSFTCNNIDAAKI  382

Query  388  NDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSN----NLDS  443
              +CF+++  D F I       +  G  G +  +NY++    T C + +N      ++  
Sbjct  383  YGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTTATSCQLYYNLPAANVSVSR  442

Query  444  KVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQS---------  494
                 +N  +    +   KP    + T      +  C       C   L           
Sbjct  443  FNPSTWNRRFGFTEQFVFKPQPVGVFTHHDVVYAQHCFKAPSNFCPCKLDGSLCVGNGPG  502

Query  495  -YGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKN  536
                   +G+G  P     L+         +C P   T+    
Sbjct  503  IDAGYKNSGIGTCPAGTNYLTCHNAAQCNCLCTPDPITSKSTG  545


>sp|P25190|SPIKE_CVBF Spike glycoprotein OS=Bovine coronavirus 
(strain F15) OX=11129 GN=S PE=3 SV=1
Length=1363

 Score = 917 bits (2370),  Expect = 0.0, Method: Composition-based stats.
 Identities = 299/870 (34%), Positives = 443/870 (51%), Gaps = 56/870 (6%)

Query  422   NYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCN  481
             NY    +   C      + + SK  G     Y+  +   L       S    ++     N
Sbjct  520   NYLTCHNAAQCNCLCTPDPITSKSTGP----YKCPQTKYLVGIGEHCSGLAIKSDYCGGN  575

Query  482   GVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHA--PATVCGP---KKSTNLVKN  536
                      P    G+   + +     R  + +  +LH     T C     K +T+++  
Sbjct  576   PC----TCQPQAFLGWSVDSCLQGD--RCNIFANFILHDVNSGTTCSTDLQKSNTDIILG  629

Query  537   KCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGV  595
              CVN++  G+TG G+  E+N  +   +Q    D        RD  T     I  C  G V
Sbjct  630   VCVNYDLYGITGQGIFVEANATYYNSWQNLLYDSNGNLYGFRDYLTNRTFMIRSCYSGRV  689

Query  596   SVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEH  655
             S        S++ A+L++++ C  V     + QL P         N F +  GC++ A++
Sbjct  690   SAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSYLGCVVNADN  739

Query  656   VNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNN---  710
                S    CD+ +G+G C  Y T     RR+    +             NSV  S     
Sbjct  740   STASAVQTCDLTVGSGYCVDYST----KRRSVRAITTGYRFTNFEPFTVNSVNDSLEPVG  795

Query  711   ---SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRAL  767
                 I IP+ FTI    E +  S  K ++DC+ ++CGD   C + L++YGSFC  +N  L
Sbjct  796   GLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDCAACKSQLVEYGSFCDNINAIL  855

Query  768   TGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN-----FSQILP----DPSKPSKRSF  817
             T +    D    +V  + +  +  +  +KD   FN     FS +L     + +K S RS 
Sbjct  856   TEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSECNKVSSRSA  915

Query  818   IEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSAL  877
             IEDLLF+KV L+D GF++ Y +C G    RDLIC Q +NG+ VLPPLL++  I+ YT A 
Sbjct  916   IEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSENQISGYTLAA  975

Query  878   LAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDS  937
              + ++   W+  AG    +PF + + YR NGIGVT +VL +NQKLIAN FN+A+  IQ+ 
Sbjct  976   TSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFNNALDAIQEG  1031

Query  938   LSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLI  997
               +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +EA+ QIDRLI
Sbjct  1032  FDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALEAQRQIDRLI  1091

Query  998   TGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAP  1057
              GR  +L  YV+QQL  +  ++ SA  A  K++ECV  QS R++FCG G H++S  Q+AP
Sbjct  1092  NGRFTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNHIISLVQNAP  1151

Query  1058  HGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQRNFYEPQIIT  1116
             +G+ F+H +YVP +      +P +C  G +   P+ G FV+    W  T   +Y P+ IT
Sbjct  1152  YGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGSGYYYPEPIT  1211

Query  1117  TDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASV  1176
              +N  V   C V      + + +   P L  FKEELD++FKN TS   DL  +  IN + 
Sbjct  1212  GNNVVVMSTCAVNYTKAPDVMLNISTPNLPDFKEELDQWFKNQTSVAPDL-SLDYINVTF  1270

Query  1177  VNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCC  1236
             +++Q E++RL E  K LN+S I+L+++G YE Y+KWPWY+WL  + G   + M+ ++   
Sbjct  1271  LDLQDEMNRLQEAIKLLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGVAMLVLLFFI  1328

Query  1237  MTSCCSCLKGCCSCGSCCKFDEDDSEPVLK  1266
                          CG CC       E V+K
Sbjct  1329  CCCTGCGTSCFKKCGGCCDDYTGHQELVIK  1358


 Score = 368 bits (945),  Expect = 1e-105, Method: Composition-based stats.
 Identities = 116/564 (21%), Positives = 204/564 (36%), Gaps = 76/564 (13%)

Query  9    PLVSSQCVNLTTRTQLPPAYTNSFTRGVYYP-DKVFRSSVLHSTQDLFLPFFSNVTWFHA  67
              VS   V+    +        +   G YY  D+V+ ++ L      + P  ++ + +  
Sbjct  22   TTVSINDVDTGVPSISTDTVDVTNGLGTYYVLDRVYLNTTLLLNG--YYP--TSGSTYRN  77

Query  68   IHVSGTN--GTKRFDNPVL-PFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNAT  124
            + + GT    T  F  P L  F +G+ FA  + + +I+  +  +   + T     VN + 
Sbjct  78   MALKGTLLLSTLWFKPPFLSDFINGI-FAKVKNTKVIKHGVMYSEFPAITIGSTFVNTSY  136

Query  125  NVV-----------------IKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCT  167
            +VV                 I VC++  C  P      H N  +     +   +   +C 
Sbjct  137  SVVVQPHTTNLDNKLQGLLEISVCQYTMCEYP--NTICHPNLGNRRVELWHWDTGVVSCL  194

Query  168  FEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLV  227
            ++   + F  D+            F F    G F  Y   T +             + L 
Sbjct  195  YK---RNFTYDVNADYLY------FHFYQEGGTFYAYFTDTGV-----------VTKFLF  234

Query  228  DLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITD  287
            ++ +G  ++ +         Y+ P   +S  T     Y+V  L  + +LL +N++G I +
Sbjct  235  NVYLGTVLSHY---------YVMPLTCNSAMT---LEYWVTPLTSKQYLLAFNQDGVIFN  282

Query  288  AVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVR-FPNITNLCPFGEVFNATR  346
            AVDC  D +SE KC   S     G+Y+ + + VQP   + R  PN+ + C      N   
Sbjct  283  AVDCKSDFMSEIKCKTLSIAPSTGVYELNGYTVQPIADVYRRIPNLPD-CNIEAWLNDKS  341

Query  347  FASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDE  406
              S   W RK  SNC  + S L +     +F C  +   K+  +CF+++  D F I    
Sbjct  342  VPSPLNWERKTFSNCNFNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGR  401

Query  407  VRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSN----NLDSKVGGNYNYLYRLFRKSNLK  462
               +  G  G +  +NY++    T C + +N      +L       +N  +    +S  K
Sbjct  402  KVDLQLGNLGYLQSFNYRIDTTATSCQLYYNLPAANVSLSRFNPSIWNRRFGFTEQSVFK  461

Query  463  PFERDISTEIYQAGSTPCNGVEGFNCYFPLQS----------YGFQPTNGVGYQPYRVVV  512
            P    + T+     +  C       C   L                  +G+G  P     
Sbjct  462  PQPVGVFTDHDVVYAQHCFKAPTNFCPCKLDGSLCVGNGPGIDAGYKNSGIGTCPAGTNY  521

Query  513  LSFELLHAPATVCGPKKSTNLVKN  536
            L+         +C P   T+    
Sbjct  522  LTCHNAAQCNCLCTPDPITSKSTG  545


>sp|Q8BB25|SPIKE_CVP67 Spike glycoprotein OS=Porcine hemagglutinating 
encephalomyelitis virus (strain 67N) OX=230237 GN=S 
PE=3 SV=1
Length=1349

 Score = 914 bits (2363),  Expect = 0.0, Method: Composition-based stats.
 Identities = 276/779 (35%), Positives = 417/779 (54%), Gaps = 38/779 (5%)

Query  509   RVVVLSFELLHA--PATVCGP---KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PF  562
             R  + +  +L+     T C     + +T +  + CVN++  G+TG G+L E N  +   +
Sbjct  583   RCNIFANFILNDVNSGTTCSTDLQQGNTIITTDVCVNYDLYGITGQGILIEVNATYYNSW  642

Query  563   QQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPV  622
             Q    D +      RD  +     I  C  G VS +      S++ A++++++ C+ V  
Sbjct  643   QNLLYDSSGNLYGFRDYLSNRTFLIRSCYSGRVSAVFHAN--SSEPALMFRNLKCSHVFN  700

Query  623   AIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNS  680
                  Q+           N F +  GC++ A +   S    CD+ +G+G C  Y T   S
Sbjct  701   NTILRQIQLV--------NYFDSYLGCVVNAYNNTASAVSTCDLTVGSGYCVDYVTALRS  752

Query  681   PRRARSVASQSIIAYTMSLGAENSVAYSNN--SIAIPTNFTISVTTEILPVSMTKTSVDC  738
              R   +    +      +    +S+        I IP+ FTI    E +     K ++DC
Sbjct  753   RRSFTTGYRFTNFEPFAANLVNDSIEPVGGLYEIQIPSEFTIGNLEEFIQTRSPKVTIDC  812

Query  739   TMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDF  797
               ++CGD   C   L +YGSFC  +N  LT +    D    +V  + +  +  +  IKD 
Sbjct  813   ATFVCGDYAACRQQLAEYGSFCENINAILTEVNELLDTTQLQVANSLMNGVTLSTKIKDG  872

Query  798   GGFN-----FSQILP----DPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARD  848
               FN     FS +L     + ++ S RS IEDLLF+KV L+D GF++ Y +C G    RD
Sbjct  873   INFNVDDINFSPVLGCLGSECNRASTRSAIEDLLFDKVKLSDVGFVQAYNNCTGGAEIRD  932

Query  849   LICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNG  908
             LIC Q +NG+ VLPPLL++  I+ YT A  A ++   WT  AG    +PF + + YR NG
Sbjct  933   LICVQSYNGIKVLPPLLSENQISGYTLAATAASLFPPWTAAAG----VPFYLNVQYRING  988

Query  909   IGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSS  968
             +GVT +VL +NQKLIA+ FN+A+  IQ+   +T SAL K+Q VVN NA+ALN L++QLS+
Sbjct  989   LGVTMDVLSQNQKLIASAFNNALDAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSN  1048

Query  969   NFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATK  1028
              FGAIS+ L +ILSRLD +EA+ QIDRLI GRL +L  YV+QQL  +  ++ SA  A  K
Sbjct  1049  RFGAISASLQEILSRLDALEAKAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAIEK  1108

Query  1029  MSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGK-A  1087
             ++ECV  QS R++FCG G H++S  Q+AP+G+ F+H +YVP +      +P +C  G   
Sbjct  1109  VNECVKSQSSRINFCGNGNHIISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDIG  1168

Query  1088  HFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS  1147
               P+ G F++    W  T  ++Y P+ IT +N  V   C V      + + +   P L  
Sbjct  1169  ISPKSGYFINVNNSWMFTGSSYYYPEPITQNNVVVMSTCAVNYTKAPDLMLNTSTPNLPD  1228

Query  1148  FKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYE  1207
             FKEEL ++FKN +S   DL  +  IN + +++Q E++RL E  K LN+S I+L+++G YE
Sbjct  1229  FKEELYQWFKNQSSVAPDL-SLDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYE  1287

Query  1208  QYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK  1266
              Y+KWPWY+WL  + GL  + M+ ++                CG CC       E V+K
Sbjct  1288  YYVKWPWYVWL--LIGLAGVAMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQEFVIK  1344


 Score = 381 bits (978),  Expect = 2e-110, Method: Composition-based stats.
 Identities = 114/493 (23%), Positives = 191/493 (39%), Gaps = 81/493 (16%)

Query  8    LPLVSSQCVNLT----TRTQLPPAYTNS-FTRGVYYP--DKVFRSSVLHSTQDLFLPFFS  60
            +P +SS+ V++T    T   L   Y N+      YYP     FR+  L  T+ L      
Sbjct  33   VPSISSEVVDVTNGLGTFYVLDRVYLNTTLLLNGYYPISGATFRNMALKGTRLL------  86

Query  61   NVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIV  120
            +  WF    +S             PFNDG+ FA  + S   +  +  +   + T     V
Sbjct  87   STLWFKPPFLS-------------PFNDGI-FAKVKNSRFSKDGVIYSEFPAITIGSTFV  132

Query  121  NNATNVV-----------------IKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA  163
            N + ++V                 I VC++  C  P      H N  +     +   +  
Sbjct  133  NTSYSIVVEPHTSLINGNLQGLLQISVCQYTMCEYPHT--ICHPNLGNQRIELWHYDTDV  190

Query  164  NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSAL  223
             +C +    + F  D+            F F    G F  Y   T          GF   
Sbjct  191  VSCLYR---RNFTYDVNADYLY------FHFYQEGGTFYAYFTDT----------GF-VT  230

Query  224  EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENG  283
            + L  L +G  ++ +         Y+ P   +S   A +  Y+V  L  R FLL ++++G
Sbjct  231  KFLFKLYLGTVLSHY---------YVMPLTCNS---ALSLEYWVTPLTTRQFLLAFDQDG  278

Query  284  TITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVR-FPNITNLCPFGEVF  342
             +  AVDCA D +SE  C   S T   G+Y+ + + VQP  ++ R  P++ N C      
Sbjct  279  VLYHAVDCASDFMSEIMCKTSSITPPTGVYELNGYTVQPVATVYRRIPDLPN-CDIEAWL  337

Query  343  NATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVI  402
            N+   +S   W RK  SNC  +   L +     +F C  +  ++L  +CF ++  D F I
Sbjct  338  NSKTVSSPLNWERKIFSNCNFNMGRLMSFIQADSFGCNNIDASRLYGMCFGSITIDKFAI  397

Query  403  RGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWN-SNNLDSKVGGNYNYLYRLFRKSNL  461
                   +  G++G +  +NYK+    + C + ++      S    N +   R +  +N 
Sbjct  398  PNSRKVDLQVGKSGYLQSFNYKIDTAVSSCQLYYSLPAANVSVTHYNPSSWNRRYGFNNQ  457

Query  462  KPFERDISTEIYQ  474
                R +   +Y 
Sbjct  458  SFGSRGLHDAVYS  470


>sp|P22432|SPIKE_CVM4 Spike glycoprotein OS=Murine coronavirus 
(strain 4) OX=12760 GN=S PE=3 SV=1
Length=1376

 Score = 911 bits (2355),  Expect = 0.0, Method: Composition-based stats.
 Identities = 280/793 (35%), Positives = 418/793 (53%), Gaps = 46/793 (6%)

Query  509   RVVVLSFELLHA--PATVCGPK---KSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PF  562
             R  + +  LL+     T C       +T +    CV ++  G+TG GV  E    +   +
Sbjct  598   RCQIFANILLNGINSGTTCSTDLQLPNTEVATGVCVRYDLYGITGQGVFKEVKADYYNSW  657

Query  563   QQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPV  622
             Q    D+    +  RD  T +   I  C  G VS        + + A+LY+++NC+ V  
Sbjct  658   QALLYDVNGNLNGFRDLTTNKTYTIRSCYSGRVSAAYH--KEAPEPALLYRNINCSYVFT  715

Query  623   AIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNS  680
                + +  P         N F +  GC++ A++  +     CD+ +GAG+C  Y     +
Sbjct  716   NNISREENPL--------NYFDSYLGCVVNADNRTDEALPNCDLRMGAGLCVDYSKSRRA  767

Query  681   PRRARSVASQSIIAYTMSLGAENSVAYSNN--SIAIPTNFTISVTTEILPVSMTKTSVDC  738
              R   +    +     M +   +SV        + IPTNFTI    E + +   K ++DC
Sbjct  768   RRSVSTGYRLTTFEPYMPMLVNDSVQSVGGLYEMQIPTNFTIGHHEEFIQIRAPKVTIDC  827

Query  739   TMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQ-IYKTPPIKD-  796
               ++CGD+  C   L++YGSFC  +N  L  +    D    +V + + Q +  +  + D 
Sbjct  828   AAFVCGDNAACRQQLVEYGSFCDNVNAILNEVNNLLDNMQLQVASALMQGVTISSRLPDG  887

Query  797   ----FGGFNFSQILP-----------DPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCL  841
                     NFS +L             PS    RS IEDLLF+KV L+D GF++ Y +C 
Sbjct  888   ISGPIDDINFSPLLGCIGSTCAEDGNGPSAIRGRSAIEDLLFDKVKLSDVGFVEAYNNCT  947

Query  842   GDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQ  901
             G    RDL+C Q FNG+ VLPP+L++  I+ YT+   A  +   WT  AG    +PF++ 
Sbjct  948   GGQEVRDLLCVQSFNGIKVLPPVLSESQISGYTAGATAAAMFPPWTAAAG----VPFSLN  1003

Query  902   MAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNT  961
             + YR NG+GVT NVL ENQK+IA+ FN+A+G IQ+   +T SALGK+Q VVN NA+ALN 
Sbjct  1004  VQYRINGLGVTMNVLSENQKMIASAFNNALGAIQEGFDATNSALGKIQSVVNANAEALNN  1063

Query  962   LVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRAS  1021
             L+ QLS+ FGAIS+ L +IL+RLD VEA+ QIDRLI GRL +L  Y+++QL  +  I+ S
Sbjct  1064  LLNQLSNRFGAISASLQEILTRLDAVEAKAQIDRLINGRLTALNAYISKQLSDSTLIKFS  1123

Query  1022  ANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAI  1081
             A  A  K++ECV  Q+ R++FCG G H++S  Q+AP+G+ F+H +YVP   K    +P +
Sbjct  1124  AAQAIEKVNECVKSQTTRINFCGNGNHILSLVQNAPYGLCFIHFSYVPTSFKTANVSPGL  1183

Query  1082  CHDG-KAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP  1140
             C  G +   P+ G FV +   W  T  N+Y P+ IT  N+ V  +C V          + 
Sbjct  1184  CISGDRGLAPKAGYFVQDNGEWKFTGSNYYYPEPITDKNSVVMISCAVNYTKAPEVFLNN  1243

Query  1141  LQPELDSFKEELDKYFKNHTSPDVDLG-DISGINASVVNIQKEIDRLNEVAKNLNESLID  1199
               P L  FKEELDK+FKN TS   DL  D   +N + +++  E++R+ +  K LNES I+
Sbjct  1244  SIPNLPDFKEELDKWFKNQTSIAPDLSLDFEKLNVTFLDLTYEMNRIQDAIKKLNESYIN  1303

Query  1200  LQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCK-FDE  1258
             L+E+G YE Y+KWPWY+WL  + GL  + +  ++                CGSCC  +  
Sbjct  1304  LKEVGTYEMYVKWPWYVWL--LIGLAGVAVCVLLFFICCCTGCGSCCFRKCGSCCDEYGG  1361

Query  1259  DDSEPVLKGVKLH  1271
                  V+  +  H
Sbjct  1362  HQDSIVIHNISAH  1374


 Score = 423 bits (1088),  Expect = 3e-125, Method: Composition-based stats.
 Identities = 128/524 (24%), Positives = 199/524 (38%), Gaps = 82/524 (16%)

Query  1    MFVFLVLLP--------LVSSQCVNLTTRTQLPPAYTN-----SFTRGVYYP-DKVFRSS  46
            +FVF++LLP            Q VN        P+ +      S   G YY  D+V+ ++
Sbjct  2    LFVFILLLPSCLGYIGDFRCIQTVNYNGNNASAPSISTEAVDVSKGLGTYYVLDRVYLNA  61

Query  47   VLHSTQDLFLPFFSNVTWFHAIHVSGTN--GTKRFDNPVL-PFNDGVYF-----------  92
             L  T   + P   + + +  + ++GTN      F  P L  FNDG++            
Sbjct  62   TLLLTG--YYPV--DGSNYRNLALTGTNTLSLTWFKPPFLSEFNDGIFAKVQNLKTNTPT  117

Query  93   -ASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKS  151
             A++    I+ G +FG T  S T  L   NN   ++  VC +  C  P+     + N   
Sbjct  118  GATSYFPTIVIGSLFGNT--SYTVVLEPYNNI--IMASVCTYTICQLPYTPCKPNTNGNR  173

Query  152  -----WMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSK  206
                   + +  +     N TF  V+ P+L               F F    G F  Y  
Sbjct  174  VIGFWHTDVKPPICLLKRNFTFN-VNAPWLY--------------FHFYQQGGTFYAYYA  218

Query  207  HTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYY  266
              P           SA   L  + IG  +T++  L  +     TP    +  +     Y+
Sbjct  219  DKP-----------SATTFLFSVYIGDILTQYFVLPFI----CTP----TAGSTLLPLYW  259

Query  267  VGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI  326
            V  L  R +L  +NE G IT AVDCA   +SE KC  +S     G+Y  S + VQP   +
Sbjct  260  VTPLLKRQYLFNFNEKGVITSAVDCASSYISEIKCKTQSLLPSTGVYDLSGYTVQPVGVV  319

Query  327  VR-FPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPT  385
             R  PN+ + C   E   A    S   W R+   NC  + S L       +  C  +  +
Sbjct  320  YRRVPNLPD-CKIEEWLTAKSVPSPLNWERRTFQNCNFNLSSLLRYVQAESLSCNNIDAS  378

Query  386  KLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWN-SNNLDSK  444
            K+  +CF +V  D F I       +  G +G +   NYK+    T C + ++   N  + 
Sbjct  379  KVYGMCFGSVSVDKFAIPRSRQIDLQIGNSGFLQTANYKIDTAATSCQLYYSLPKNNVTI  438

Query  445  VGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNC  488
               N +   R +  ++   F +      Y   +  C  V    C
Sbjct  439  NNYNPSSWNRRYGFNDAGVFGKSKHDVAY---AQQCFTVRPSYC  479


>sp|Q02385|SPIKE_CVMJC Spike glycoprotein OS=Murine coronavirus 
(strain JHMV / variant CL-2) OX=33735 GN=S PE=1 SV=1
Length=1376

 Score = 906 bits (2342),  Expect = 0.0, Method: Composition-based stats.
 Identities = 279/791 (35%), Positives = 418/791 (53%), Gaps = 46/791 (6%)

Query  511   VVLSFELLHA--PATVCGPK---KSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQ  564
              + +  LL+     T C       +T +    CV ++  G+TG GV  E    +   +Q 
Sbjct  600   QIFANILLNGINSGTTCSTDLQLPNTEVATGVCVRYDLYGITGQGVFKEVKADYYNSWQA  659

Query  565   FGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAI  624
                D+    +  RD  T +   I  C  G VS        + + A+LY+++NC+ V    
Sbjct  660   LLYDVNGNLNGFRDLTTNKTYTIRSCYSGRVSAAYH--KEAPEPALLYRNINCSYVFTNN  717

Query  625   HADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPR  682
              + +  P         N F +  GC++ A++  +     CD+ +GAG+C  Y     + R
Sbjct  718   ISREENPL--------NYFDSYLGCVVNADNRPDEALPNCDLRMGAGLCVDYSKSRRARR  769

Query  683   RARSVASQSIIAYTMSLGAENSVAYSNN--SIAIPTNFTISVTTEILPVSMTKTSVDCTM  740
                +    +     M +   +SV        + IPTNFTI    E + +   K ++DC  
Sbjct  770   SVSTGYRLTTFEPYMPMLVNDSVQSVGGLYEMQIPTNFTIGHHEEFIQIRAPKVTIDCAA  829

Query  741   YICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQ-IYKTPPIKD---  796
             ++CGD+  C   L++YGSFC  +N  L  +    D    +V + + Q +  +  + D   
Sbjct  830   FVCGDNAACRQQLVEYGSFCDNVNAILNEVNNLLDNMQLQVASALMQGVTISSRLPDGIS  889

Query  797   --FGGFNFSQILP-----------DPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGD  843
                   NFS +L             PS    RS IEDLLF+KV L+D GF++ Y +C G 
Sbjct  890   GPIDDINFSPLLGCIGSTCAEDGNGPSAMRGRSAIEDLLFDKVKLSDVGFVEAYNNCTGG  949

Query  844   IAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMA  903
                RDL+C Q FNG+ VLPP+L++  I+ YT+   A  +   WT  AG    +PF++ + 
Sbjct  950   QEVRDLLCVQSFNGIKVLPPVLSESQISGYTAGATAAAMFPPWTAAAG----VPFSLNVQ  1005

Query  904   YRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLV  963
             YR NG+GVT NVL ENQK+IA+ FN+A+G IQ+   +T SALGK+Q VVN NA+ALN L+
Sbjct  1006  YRINGLGVTMNVLSENQKMIASAFNNALGAIQEGFDATNSALGKIQSVVNANAEALNNLL  1065

Query  964   KQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASAN  1023
              QLS+ FGAIS+ L +IL+RLD+VEA+ QIDRLI GRL +L  Y+++QL  +  I+ SA 
Sbjct  1066  NQLSNRFGAISASLQEILTRLDRVEAKAQIDRLINGRLTALNAYISKQLSDSTLIKFSAA  1125

Query  1024  LAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICH  1083
              A  K++ECV  Q+ R++FCG G H++S  Q+AP+G+ F+H +YVP   K    +P +C 
Sbjct  1126  QAIEKVNECVKSQTTRINFCGNGNHILSLVQNAPYGLCFIHFSYVPTSFKTANVSPGLCI  1185

Query  1084  DG-KAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQ  1142
              G +   P+ G FV +   W  T  N+Y P+ IT  N+ V  +C V          +   
Sbjct  1186  SGDRGLAPKAGYFVQDNGEWKFTGSNYYYPEPITDKNSVVMISCAVNYTKAPEVFLNNSI  1245

Query  1143  PELDSFKEELDKYFKNHTSPDVDLG-DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQ  1201
             P L  FKEELDK+FKN TS   DL  D   +N + +++  E++R+ +  K LNES I+L+
Sbjct  1246  PNLPDFKEELDKWFKNQTSIAPDLSLDFEKLNVTFLDLTYEMNRIQDAIKKLNESYINLK  1305

Query  1202  ELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCK-FDEDD  1260
             E+G YE Y+KWPWY+WL  + GL  + +  ++                CGSCC  +    
Sbjct  1306  EVGTYEMYVKWPWYVWL--LIGLAGVAVCVLLFFICCCTGCGSCCFRKCGSCCDEYGGHQ  1363

Query  1261  SEPVLKGVKLH  1271
                V+  +  H
Sbjct  1364  DSIVIYNISAH  1374


 Score = 424 bits (1090),  Expect = 2e-125, Method: Composition-based stats.
 Identities = 131/559 (23%), Positives = 207/559 (37%), Gaps = 82/559 (15%)

Query  1    MFVFLVLLP--------LVSSQCVNLTTRTQLPPAYTN-----SFTRGVYYP-DKVFRSS  46
            +FVF++ LP            Q VN        P+ +      S   G YY  D+V+ ++
Sbjct  2    LFVFILFLPSCLGYIGDFRCIQTVNYNGNNASAPSISTEAVDVSKGLGTYYVLDRVYLNA  61

Query  47   VLHSTQDLFLPFFSNVTWFHAIHVSGTN--GTKRFDNPVL-PFNDGVYF-----------  92
             L  T   + P   + + +  + ++GTN      F  P L  FNDG++            
Sbjct  62   TLLLTG--YYPV--DGSNYRNLALTGTNTLSLTWFKPPFLSEFNDGIFAKVQNLKTNTPT  117

Query  93   -ASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKS  151
             A++    I+ G +FG T  S T  L   NN   ++  VC +  C  P+     + N   
Sbjct  118  GATSYFPTIVIGSLFGNT--SYTVVLEPYNNI--IMASVCTYTICQLPYTPCKPNTNGNR  173

Query  152  -----WMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSK  206
                   + +  +     N TF  V+ P+L               F F    G F  Y  
Sbjct  174  VIGFWHTDVKPPICLLKRNFTFN-VNAPWLY--------------FHFYQQGGTFYAYYA  218

Query  207  HTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYY  266
              P           SA   L  + IG  +T++  L  +     TP    +  +     Y+
Sbjct  219  DKP-----------SATTFLFSVYIGDILTQYFVLPFI----CTP----TAGSTLLPLYW  259

Query  267  VGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI  326
            V  L  R +L  +NE G IT AVDCA   +SE KC  +S     G+Y  S + VQP   +
Sbjct  260  VTPLLKRQYLFNFNEKGVITSAVDCASSYISEIKCKTQSLLPSTGVYDLSGYTVQPVGVV  319

Query  327  VR-FPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPT  385
             R  PN+ + C   E   A    S   W R+   NC  + S L       +  C  +  +
Sbjct  320  YRRVPNLPD-CKIEEWLTAKSVPSPLNWERRTFQNCNFNLSSLLRYVQAESLSCNNIDAS  378

Query  386  KLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWN-SNNLDSK  444
            K+  +CF +V  D F I       +  G +G +   NYK+    T C + ++   N  + 
Sbjct  379  KVYGMCFGSVSVDKFAIPRSRQIDLQIGNSGFLQTANYKIDTAATSCQLYYSLPKNNVTI  438

Query  445  VGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFP--LQSYGFQPTNG  502
               N +   R +  ++   F +    ++  A            C  P  + +   Q    
Sbjct  439  NNYNPSSWNRRYGFNDAGVFGKS-KHDVAYAQQCFIVRPSYCPCAQPDIVSACTSQTKPM  497

Query  503  VGYQPYRVVVLSFELLHAP  521
              Y P   +     L + P
Sbjct  498  SAYCPTGTIHRECSLWNGP  516


>sp|Q8JSP8|SPIKE_CVPIA Spike glycoprotein OS=Porcine hemagglutinating 
encephalomyelitis virus (strain IAF-404) OX=230236 GN=S 
PE=3 SV=1
Length=1349

 Score = 903 bits (2334),  Expect = 0.0, Method: Composition-based stats.
 Identities = 277/779 (36%), Positives = 415/779 (53%), Gaps = 38/779 (5%)

Query  509   RVVVLSFELLHA--PATVCGP---KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PF  562
             R  + +  +L+     T C     + +TN+  + CVN++  G+TG G+L E N  +   +
Sbjct  583   RCNIFANFILNDVNSGTTCSTDLQQGNTNITTDVCVNYDLYGITGQGILIEVNATYYNSW  642

Query  563   QQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPV  622
             Q    D +      RD  +     I  C  G VS +      S++ A++++++ C+ V  
Sbjct  643   QNLLYDSSGNLYGFRDYLSNRTFLIRSCYSGRVSAVFHAN--SSEPALMFRNLKCSHVFN  700

Query  623   AIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNS  680
                  Q+           N F +  GC++ A +   S    CD+ +G+G C  Y T   S
Sbjct  701   YTILRQIQLV--------NYFDSYLGCVVNAYNNTASAVSTCDLTVGSGYCVDYVTALRS  752

Query  681   PRRARSVASQSIIAYTMSLGAENSVAYSNN--SIAIPTNFTISVTTEILPVSMTKTSVDC  738
              R   +    +      +    +S+        I IP+ FTI    E +  S  K ++DC
Sbjct  753   RRSFTTGYRFTNFEPFAANLVNDSIEPVGGLYEIQIPSEFTIGNLEEFIQTSSPKVTIDC  812

Query  739   TMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDF  797
               ++CGD   C   L +YGSFC  +N  L  +    D    +V  + +  +  +  IKD 
Sbjct  813   ATFVCGDYAACRQQLAEYGSFCENINAILIEVNELLDTTQLQVANSLMNGVTLSTKIKDG  872

Query  798   GGFN-----FSQILP----DPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARD  848
               FN     FS +L     + ++ S RS IEDLLF+KV L+D GF++ Y +C G    RD
Sbjct  873   INFNVDDINFSSVLGCLGSECNRASTRSAIEDLLFDKVKLSDVGFVQAYNNCTGGAEIRD  932

Query  849   LICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNG  908
             LIC Q +NG+ VLPPLL++  I+ YTSA  A ++   WT  AG    +PF + + YR NG
Sbjct  933   LICVQSYNGIKVLPPLLSENQISGYTSAATAASLFPPWTAAAG----VPFYLNVQYRING  988

Query  909   IGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSS  968
             +GVT +VL +NQKLIA+ FN+A+  IQ+   +T SAL K+Q VVN NA+ALN L++QLS+
Sbjct  989   LGVTMDVLSQNQKLIASAFNNALDSIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSN  1048

Query  969   NFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATK  1028
              FGAIS+ L +ILSRLD +EA+ QIDRLI GRL +L  YV+QQL  +  ++ SA  A  K
Sbjct  1049  RFGAISASLQEILSRLDALEAKAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAIEK  1108

Query  1029  MSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGK-A  1087
             ++ECV  QS R++FCG G H++S  Q+AP+G+ F+H +YVP +      +P +C  G   
Sbjct  1109  VNECVKSQSSRINFCGNGNHIISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDIG  1168

Query  1088  HFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS  1147
               P+ G F++    W  T   +Y P+ IT +N  V   C V      + + +   P L  
Sbjct  1169  ISPKSGYFINVNNSWMFTGSGYYYPEPITQNNVVVMSTCAVNYTKAPDLMLNTSTPNLPD  1228

Query  1148  FKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYE  1207
             FKEEL ++FKN +S   DL     IN + +++Q E++RL E  K LN S I+L+++G YE
Sbjct  1229  FKEELYQWFKNQSSLAPDL-SFDYINVTFLDLQDEMNRLQEAIKVLNHSYINLKDIGTYE  1287

Query  1208  QYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK  1266
              Y+KWPWY+WL  +  L  +VM+ ++                CG C        E V+K
Sbjct  1288  YYVKWPWYVWL--LICLAGVVMLVLLFFICCCTGCGTSCFKKCGGCFDDYTGHQEFVIK  1344


 Score = 372 bits (954),  Expect = 4e-107, Method: Composition-based stats.
 Identities = 114/493 (23%), Positives = 189/493 (38%), Gaps = 81/493 (16%)

Query  8    LPLVSSQCVNLT----TRTQLPPAYTNS-FTRGVYYP--DKVFRSSVLHSTQDLFLPFFS  60
            +P +SS+ V++T    T   L   Y N+      YYP     FR+  L  T+ L      
Sbjct  33   VPSISSEVVDVTNGLGTFYVLDRVYLNTTLLLNGYYPISGATFRNVALKGTRLL------  86

Query  61   NVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIV  120
            +  WF    +S             PFNDG+ FA  + S   +  +  +   + T     V
Sbjct  87   STLWFKPPFLS-------------PFNDGI-FAKVKNSRFSKHGVIYSEFPAITIGSTFV  132

Query  121  NNATNVV-----------------IKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA  163
            N + ++V                 I VC++  C  P      H N  +     +   +  
Sbjct  133  NTSYSIVVKPHTSFINGNLQGFLQISVCQYTMCEYPQT--ICHPNLGNQRIELWHHDTDV  190

Query  164  NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSAL  223
             +C +    + F  D+            F F    G F  Y   T          GF   
Sbjct  191  VSCLYR---RNFTYDVNADYLY------FHFYQEGGTFYAYFTDT----------GF-VT  230

Query  224  EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENG  283
            + L  L +G  ++ +         Y+ P    S   A +  Y+V  L  R FLL ++++G
Sbjct  231  KFLFKLYLGTVLSHY---------YVMPLTCDS---ALSLEYWVTPLTTRQFLLAFDQDG  278

Query  284  TITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVR-FPNITNLCPFGEVF  342
             +  AVDCA D +SE  C   S T   G+Y+ + + VQP  ++ R  P++ N C      
Sbjct  279  VLYHAVDCASDFMSEIMCKTSSITPPTGVYELNGYTVQPVATVYRRIPDLPN-CDIEAWL  337

Query  343  NATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVI  402
            N+   +S   W RK  SNC  +   L +     +F C  +  ++L  +CF ++  D F I
Sbjct  338  NSKTVSSPLNWERKIFSNCNFNMGRLMSFIQADSFGCNNIDASRLYGMCFGSITIDKFAI  397

Query  403  RGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWN-SNNLDSKVGGNYNYLYRLFRKSNL  461
                   +  G++G +  +NYK+    + C + ++      S    N +   R +   N 
Sbjct  398  PNSRKVDLQVGKSGYLQSFNYKIDTAVSSCQLYYSLPAANVSVTHYNPSSWNRRYGFINQ  457

Query  462  KPFERDISTEIYQ  474
                R +   +Y 
Sbjct  458  SFGSRGLHDAVYS  470


>sp|Q7T6T3|SPIKE_CVCBG Spike glycoprotein OS=Canine coronavirus 
(strain BGF10) OX=441619 GN=S PE=3 SV=1
Length=1453

 Score = 797 bits (2058),  Expect = 0.0, Method: Composition-based stats.
 Identities = 241/842 (29%), Positives = 385/842 (46%), Gaps = 103/842 (12%)

Query  458   KSNLKPFERDISTEIYQAGSTPCNGVE--GFNCYFPLQSYGFQPTNGVGYQPYRVVVLSF  515
             K+   PF  D     Y   +  C  +   G NC F + +       GVG   Y +     
Sbjct  610   KTGTCPFSFDKLNN-YLTFNKFCLSLNPTGANCKFDVVARTRTNEQGVG-SLYVIYEEGD  667

Query  516   ELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDA  575
              ++  P+   G    + L  + C ++N  G  G G++ ++N   L    +   ++     
Sbjct  668   NIVGVPSDNSGLHDLSVLHLDSCTDYNIYGRNGVGIIRKTNSTLLSGLYYTS-LSGDLLG  726

Query  576   VRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV  635
              ++     +  +TPC     + +  G       ++  + +  T           TP +  
Sbjct  727   FKNVSDGVVYSVTPCEVSAQAAVIDGAIVGAMTSINSELLGLTHWTT-------TPNFYY  779

Query  636   YSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARSVASQSI  692
             YS  +   +   G +  +    N  +C+  I     G+C +               +   
Sbjct  780   YSIYNYTNERVRGTVTDS----NDVDCEPIITYSNIGVCKN--------------GALVF  821

Query  693   IAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNL  752
             I  T S G    ++  N  + IPTNFTISV  E + V  T  S+DC+ Y+C  ++ C+ L
Sbjct  822   INVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNSRCNKL  879

Query  753   LLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGF------------  800
             L QY S C  + +AL   A  ++     +    +   K   ++ F               
Sbjct  880   LTQYVSACHTIEQALAMGARLENMEIDSMLFVSENALKLASVEAFNSTDNLDPIYREWPN  939

Query  801   -------NFSQILPDP-SKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDIAARDLIC  851
                        ILP   SK   RS IEDLLF+KV  +  G + + Y  C G     DL+C
Sbjct  940   IGGSWLGGLKDILPSHNSKRKYRSAIEDLLFDKVVTSGLGTVDEDYKRCTGGYDIADLVC  999

Query  852   AQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGV  911
             AQ +NG+ VLP +  D+ +A YT++L  G          G A+ IPFA+ +  R N + +
Sbjct  1000  AQYYNGIMVLPGVANDDKMAMYTASLAGGITLG---ALGGGAVSIPFAVAVQARLNYVAL  1056

Query  912   TQNVLYENQKLIANQFNSAIGKIQDSL--------------SSTASALGKLQDVVNQNAQ  957
               +VL +NQ+++AN FN AIG I  +               ++ A AL K+QDVVN   Q
Sbjct  1057  QTDVLNKNQQILANAFNQAIGNITQAFGNVNDAIHQTSKGLATVAKALAKVQDVVNTQGQ  1116

Query  958   ALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAE  1017
             AL+ L  QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L  +V+Q L R AE
Sbjct  1117  ALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQTLTRQAE  1176

Query  1018  IRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTT  1077
             +RAS  LA  K++ECV  QS+R  FCG G HL S   +AP+G++F H   +P   +  T 
Sbjct  1177  VRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPTAYETVTA  1236

Query  1078  APAICH-DGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVI  1130
                IC  DG   F       +  +F +    +++T R  Y+P++ T+ +      CDV+ 
Sbjct  1237  WSGICASDGNRTFGLVVKDVQLTLFRNLDYKFYLTPRTMYQPRVATSSDFVQIEGCDVLF  1296

Query  1131  GIVNNTVYDPLQPELDS----FKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRL  1186
                       + P+        ++ L+ +  N T P++ L      NA+ +N+  EI+ L
Sbjct  1297  VNATVIELPSIIPDYIDINQTVQDILENFRPNWTVPELPL---DIFNATYLNLTGEINDL  1353

Query  1187  N--------------EVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTI  1232
                             +  N+N +L++L+ L + E Y+KWPWY+WL  + GL+ I  + +
Sbjct  1354  EFRSEKLHNTTLELATLIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIGLVVIFCIPL  1411

Query  1233  ML  1234
             +L
Sbjct  1412  LL  1413


>sp|P10033|SPIKE_FIPV Spike glycoprotein OS=Feline coronavirus 
(strain FIPV WSU-79/1146) OX=33734 GN=S PE=1 SV=1
Length=1452

 Score = 796 bits (2056),  Expect = 0.0, Method: Composition-based stats.
 Identities = 242/848 (29%), Positives = 379/848 (45%), Gaps = 103/848 (12%)

Query  458   KSNLKPFERDISTEIYQAGSTPCNGVE--GFNCYFPLQSYGFQPTNGVGYQPYRVVVLSF  515
             K+   PF  D     Y   +  C  +   G NC F + +        V    Y +     
Sbjct  609   KTGTCPFSFDKLNN-YLTFNKFCLSLSPVGANCKFDVAARTRTNEQ-VVRSLYVIYEEGD  666

Query  516   ELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDA  575
              ++  P+   G    + L  + C ++N  G TG G++  +N   L    +   ++     
Sbjct  667   NIVGVPSDNSGLHDLSVLHLDSCTDYNIYGRTGVGIIRRTNSTLLSGLYYTS-LSGDLLG  725

Query  576   VRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV  635
              ++     I  +TPC     + +  G       ++  + +  T           TP +  
Sbjct  726   FKNVSDGVIYSVTPCDVSAQAAVIDGAIVGAMTSINSELLGLTHWTT-------TPNFYY  778

Query  636   YSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARSVASQSI  692
             YS  +   +   G  I +    N  +C+  I     G+C +               +   
Sbjct  779   YSIYNYTSERTRGTAIDS----NDVDCEPVITYSNIGVCKN--------------GALVF  820

Query  693   IAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNL  752
             I  T S G    ++  N  + IPTNFTISV  E + V  T  S+DC  Y+C  +  C+ L
Sbjct  821   INVTHSDGDVQPISTGN--VTIPTNFTISVQVEYMQVYTTPVSIDCARYVCNGNPRCNKL  878

Query  753   LLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGF------------  800
             L QY S C  + +AL   A  ++     +    +   K   ++ F               
Sbjct  879   LTQYVSACQTIEQALAMGARLENMEVDSMLFVSENALKLASVEAFNSTENLDPIYKEWPS  938

Query  801   -------NFSQILPDP-SKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDIAARDLIC  851
                        ILP   SK    S IEDLLF+KV  +  G + + Y  C G     DL+C
Sbjct  939   IGGSWLGGLKDILPSHNSKRKYGSAIEDLLFDKVVTSGLGTVDEDYKRCTGGYDIADLVC  998

Query  852   AQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGV  911
             AQ +NG+ VLP +   + +  YT++L  G          G A+ IPFA+ +  R N + +
Sbjct  999   AQYYNGIMVLPGVANADKMTMYTASLAGGITLG---ALGGGAVAIPFAVAVQARLNYVAL  1055

Query  912   TQNVLYENQKLIANQFNSAIGKIQDSL--------------SSTASALGKLQDVVNQNAQ  957
               +VL +NQ+++AN FN AIG I  +               ++ A AL K+QDVVN   Q
Sbjct  1056  QTDVLNKNQQILANAFNQAIGNITQAFGKVNDAIHQTSQGLATVAKALAKVQDVVNTQGQ  1115

Query  958   ALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAE  1017
             AL+ L  QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L  +V+Q L R AE
Sbjct  1116  ALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQTLTRQAE  1175

Query  1018  IRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTT  1077
             +RAS  LA  K++ECV  QS+R  FCG G HL S   +AP+G++F H   +P   +  T 
Sbjct  1176  VRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPTAYETVTA  1235

Query  1078  APAICH-DGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVI  1130
                IC  DG   F       +  +F +    +++T R  Y+P++ T+ +      CDV+ 
Sbjct  1236  WSGICASDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQIEGCDVLF  1295

Query  1131  GIVNNTVYDPLQPELDS----FKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRL  1186
                       + P+        ++ L+ Y  N T P+  L      NA+ +N+  EID L
Sbjct  1296  VNATVIDLPSIIPDYIDINQTVQDILENYRPNWTVPEFTL---DIFNATYLNLTGEIDDL  1352

Query  1187  N--------------EVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTI  1232
                             +  N+N +L++L+ L + E Y+KWPWY+WL  + GL+ +  + +
Sbjct  1353  EFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIGLVVVFCIPL  1410

Query  1233  MLCCMTSC  1240
             +L C  S 
Sbjct  1411  LLFCCFST  1418


>sp|Q65984|SPIKE_CVCAK Spike glycoprotein OS=Canine coronavirus 
(strain K378) OX=33732 GN=S PE=1 SV=1
Length=1453

 Score = 795 bits (2052),  Expect = 0.0, Method: Composition-based stats.
 Identities = 242/843 (29%), Positives = 382/843 (45%), Gaps = 103/843 (12%)

Query  458   KSNLKPFERDISTEIYQAGSTPCNGVE--GFNCYFPLQSYGFQPTNGVGYQPYRVVVLSF  515
             K+   PF  D     Y   +  C  +   G NC F + +        V    Y +     
Sbjct  610   KTGTCPFSFDKLNN-YLTFNKFCLSLNPVGANCKFDVAARTRTNEQ-VVRSLYVIYEEGD  667

Query  516   ELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDA  575
              ++  P+   G    + L  + C ++N  G+TG G++ ++N   L    +   ++     
Sbjct  668   NIVGVPSDNSGLHDLSVLHLDSCTDYNIYGITGVGIIRQTNSTLLSGLYYTS-LSGDLLG  726

Query  576   VRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV  635
              ++     I  +TPC     + +  G       ++  + +  T           TP +  
Sbjct  727   FKNVSDGVIYSVTPCDVSAHAAVIDGAIVGAMTSINSELLGLTHWTT-------TPNFYY  779

Query  636   YSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARSVASQSI  692
             YS  +   +   G  I +    N  +C+  I     G+C +               +   
Sbjct  780   YSIYNYTNERTRGTAIDS----NDVDCEPIITYSNIGVCKN--------------GALVF  821

Query  693   IAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNL  752
             I  T S G    ++  N  + IPTNFTISV  E + V  T  S+DC+ Y+C  +  C+ L
Sbjct  822   INVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNPRCNKL  879

Query  753   LLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGF------------  800
             L QY S C  + +AL   A  ++     +    +   K   ++ F               
Sbjct  880   LTQYVSACQTIEQALAMGARLENMEIDSMLFVSENALKLASVEAFNSTETLDPIYKEWPN  939

Query  801   -------NFSQILPDP-SKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDIAARDLIC  851
                        ILP   SK   RS IEDLLF+KV  +  G + + Y  C G     DL+C
Sbjct  940   IGGSWLGGLKDILPSHNSKRKYRSAIEDLLFDKVVTSGLGTVDEDYKRCTGGYDIADLVC  999

Query  852   AQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGV  911
             AQ +NG+ VLP +  D+ +A YT++L  G          G A+ IPFA+ +  R N + +
Sbjct  1000  AQYYNGIMVLPGVANDDKMAMYTASLAGGITLGSL---GGGAVSIPFAIAVQARLNYVAL  1056

Query  912   TQNVLYENQKLIANQFNSAIGKIQDSL--------------SSTASALGKLQDVVNQNAQ  957
               +VL +NQ+++AN FN AIG I  +               ++ A  L K+QDVVN   Q
Sbjct  1057  QTDVLNKNQQILANAFNQAIGNITQAFGKVNDAIHQTSQGLATVAKVLAKVQDVVNTQGQ  1116

Query  958   ALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAE  1017
             AL+ L  QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L  +V+Q L R AE
Sbjct  1117  ALSHLTLQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQTLTRQAE  1176

Query  1018  IRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTT  1077
             +RAS  LA  K++ECV  QS+R  FCG G HL S   +AP+G++F H   +P   +  T 
Sbjct  1177  VRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPTAYETVTA  1236

Query  1078  APAICH-DGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVI  1130
                IC  DG   F       +  +F +    +++T R  Y+P + T+ +      CDV+ 
Sbjct  1237  WSGICASDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPIVATSSDFVQIEGCDVLF  1296

Query  1131  GIVNNTVYDPLQPELDS----FKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRL  1186
                       + P+        ++ L+ +  N T P++ L      NA+ +N+  EI+ L
Sbjct  1297  VNATVIDLPSIIPDYIDINQTVQDILENFRPNWTVPELPL---DIFNATYLNLTGEINDL  1353

Query  1187  N--------------EVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTI  1232
                             +  N+N +L++L+ L + E Y+KWPWY+WL  + GL+ I  + I
Sbjct  1354  EFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIGLVVIFCIPI  1411

Query  1233  MLC  1235
             +L 
Sbjct  1412  LLF  1414


>sp|P27655|SPIKE_CVPR8 Spike glycoprotein OS=Porcine respiratory 
coronavirus (strain 86/137004 / isolate British) OX=33736 
GN=S PE=3 SV=1
Length=1225

 Score = 794 bits (2051),  Expect = 0.0, Method: Composition-based stats.
 Identities = 244/843 (29%), Positives = 386/843 (46%), Gaps = 103/843 (12%)

Query  458   KSNLKPFERDISTEIYQAGSTPCNGVE--GFNCYFPLQSYGFQPTNGVGYQPYRVVVLSF  515
             K+   PF  D     Y   +  C  +   G NC F + +      +      Y +     
Sbjct  382   KTGTCPFSFDKLNN-YLTFNKFCLSLSPVGANCKFDVAARTR-TNDQFVRSLYVIYEEGD  439

Query  516   ELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDA  575
              ++  P+   G    + L  + C ++N  G TG G++ ++N+  L    +   ++     
Sbjct  440   SIVGVPSDNSGLHDLSVLHLDSCTDYNIYGRTGVGIIRQTNRTLLSGLYYTS-LSGDLLG  498

Query  576   VRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV  635
              ++     I  +TPC     + I  G       ++  + +  T          +TP +  
Sbjct  499   FKNVSDGVIYSVTPCDVSAQAAIIDGAIVGAITSINSELLALTHWT-------ITPNFYY  551

Query  636   YSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARSVASQSI  692
             YS  +       G  IG+    N  +C+  I     G+C +               +   
Sbjct  552   YSIYNYTNDKTRGTPIGS----NDVDCEPVITYSNIGVCKN--------------GALVF  593

Query  693   IAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNL  752
             I  T S G    ++  N  + IPTNFTISV  E + V  T  S+DC+ Y+C  +  C+ L
Sbjct  594   INVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNPRCNKL  651

Query  753   LLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPI----------------KD  796
             L QY S C  + +AL   A  ++     +    +   K   +                 +
Sbjct  652   LTQYVSACQTIEQALAMGARLENMEVDSMLFVSENALKLASVEAFNSSETLDPIYKEWPN  711

Query  797   FGGF---NFSQILP-DPSKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDIAARDLIC  851
              GGF       ILP D SK   RS IEDLLF+KV  +  G + + Y  C G     DL+C
Sbjct  712   IGGFWLEGLKYILPSDNSKRKYRSAIEDLLFSKVVTSGLGTVDEDYKRCTGGYDIADLVC  771

Query  852   AQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGV  911
             AQ +NG+ VLP +   + +  YT++L  G          G A+ IPFA+ +  R N + +
Sbjct  772   AQYYNGIMVLPGVANADKMTMYTASLAGGITLG---ALGGGAVAIPFAVAVQARLNYVAL  828

Query  912   TQNVLYENQKLIANQFNSAIGKIQD--------------SLSSTASALGKLQDVVNQNAQ  957
               +VL +NQ+++A+ FN AIG I                 L++ A AL K+QDVVN   Q
Sbjct  829   QTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHQTSRGLTTVAKALAKVQDVVNTQGQ  888

Query  958   ALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAE  1017
             AL  L  QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L  +V+Q L R AE
Sbjct  889   ALRHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQTLTRQAE  948

Query  1018  IRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTT  1077
             +RAS  LA  K++ECV  QS R  FCG G HL S   +AP+G++F H   +P   +  T 
Sbjct  949   VRASRQLAKDKVNECVKSQSHRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPTAYETVTA  1008

Query  1078  APAICH-DGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVI  1130
                IC  DG   F       +  +F +   ++++T R  Y+P++ T+ +      CDV+ 
Sbjct  1009  WSGICALDGDRTFGLVVKDVQLTLFRNLDDNFYLTPRTMYQPRVATSSDFVQIEGCDVLF  1068

Query  1131  GIVNNTVYDPLQPELDS----FKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRL  1186
                  +    + P+        ++ L+ +  N T P++ +      NA+ +N+  EID L
Sbjct  1069  VNTTVSDLPSIIPDYIDINQTVQDILENFRPNWTVPELTM---DVFNATYLNLTGEIDDL  1125

Query  1187  N--------------EVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTI  1232
                             +  N+N +L++L+ L + E Y+KWPWY+WL  + GL+ I  + +
Sbjct  1126  EFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIGLVVIFCIPL  1183

Query  1233  MLC  1235
             +L 
Sbjct  1184  LLF  1186


>sp|P07946|SPIKE_CVPPU Spike glycoprotein OS=Porcine transmissible 
gastroenteritis coronavirus (strain Purdue) OX=11151 GN=S 
PE=1 SV=2
Length=1447

 Score = 794 bits (2050),  Expect = 0.0, Method: Composition-based stats.
 Identities = 242/843 (29%), Positives = 383/843 (45%), Gaps = 103/843 (12%)

Query  458   KSNLKPFERDISTEIYQAGSTPCNGVE--GFNCYFPLQSYGFQPTNGVGYQPYRVVVLSF  515
             K+   PF  D     Y   +  C  +   G NC F + +        V    Y +     
Sbjct  604   KTGTCPFSFDKLNN-YLTFNKFCLSLSPVGANCKFDVAARTRTNEQ-VVRSLYVIYEEGD  661

Query  516   ELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDA  575
              ++  P+   G    + L  + C ++N  G TG G++ ++N+  L    +   ++     
Sbjct  662   NIVGVPSDNSGVHDLSVLHLDSCTDYNIYGRTGVGIIRQTNRTLLSGLYYTS-LSGDLLG  720

Query  576   VRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV  635
              ++     I  +TPC     + +  GT      ++  + +  T           TP +  
Sbjct  721   FKNVSDGVIYSVTPCDVSAQAAVIDGTIVGAITSINSELLGLTHWTT-------TPNFYY  773

Query  636   YSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARSVASQSI  692
             YS  +       G  I +    N  +C+  I     G+C +               +   
Sbjct  774   YSIYNYTNDRTRGTAIDS----NDVDCEPVITYSNIGVCKN--------------GAFVF  815

Query  693   IAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNL  752
             I  T S G    ++  N  + IPTNFTISV  E + V  T  S+DC+ Y+C  +  C+ L
Sbjct  816   INVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNPRCNKL  873

Query  753   LLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGF------------  800
             L QY S C  + +AL   A  ++     +    +   K   ++ F               
Sbjct  874   LTQYVSACQTIEQALAMGARLENMEVDSMLFVSENALKLASVEAFNSSETLDPIYKEWPN  933

Query  801   -------NFSQILPDP-SKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDIAARDLIC  851
                        ILP   SK   RS IEDLLF+KV  +  G + + Y  C G     DL+C
Sbjct  934   IGGSWLEGLKYILPSHNSKRKYRSAIEDLLFDKVVTSGLGTVDEDYKRCTGGYDIADLVC  993

Query  852   AQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGV  911
             AQ +NG+ VLP +   + +  YT++L  G          G A+ IPFA+ +  R N + +
Sbjct  994   AQYYNGIMVLPGVANADKMTMYTASLAGGITLG---ALGGGAVAIPFAVAVQARLNYVAL  1050

Query  912   TQNVLYENQKLIANQFNSAIGKIQD--------------SLSSTASALGKLQDVVNQNAQ  957
               +VL +NQ+++A+ FN AIG I                 L++ A AL K+QDVVN   Q
Sbjct  1051  QTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHQTSRGLATVAKALAKVQDVVNIQGQ  1110

Query  958   ALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAE  1017
             AL+ L  QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L  +V+Q L R AE
Sbjct  1111  ALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQTLTRQAE  1170

Query  1018  IRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTT  1077
             +RAS  LA  K++ECV  QS+R  FCG G HL S   +AP+G++F H   +P   +  T 
Sbjct  1171  VRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPTAYETVTA  1230

Query  1078  APAICH-DGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVI  1130
              P IC  DG   F       +  +F +    +++T R  Y+P++ T+ +      CDV+ 
Sbjct  1231  WPGICASDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQIEGCDVLF  1290

Query  1131  GIVNNTVYDPLQPELDS----FKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRL  1186
                  +    + P+        ++ L+ +  N T P++        NA+ +N+  EID L
Sbjct  1291  VNATVSDLPSIIPDYIDINQTVQDILENFRPNWTVPELTF---DIFNATYLNLTGEIDDL  1347

Query  1187  N--------------EVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTI  1232
                             +  N+N +L++L+ L + E Y+KWPWY+WL  + GL+ I  + +
Sbjct  1348  EFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIGLVVIFCIPL  1405

Query  1233  MLC  1235
             +L 
Sbjct  1406  LLF  1408


>sp|Q01977|SPIKE_CVPRT Spike glycoprotein OS=Porcine transmissible 
gastroenteritis coronavirus (strain NEB72-rt) OX=33738 
GN=S PE=3 SV=1
Length=1447

 Score = 791 bits (2042),  Expect = 0.0, Method: Composition-based stats.
 Identities = 241/843 (29%), Positives = 382/843 (45%), Gaps = 103/843 (12%)

Query  458   KSNLKPFERDISTEIYQAGSTPCNGVE--GFNCYFPLQSYGFQPTNGVGYQPYRVVVLSF  515
             K+   PF  D     Y   +  C  +   G NC F + +        V    Y +     
Sbjct  604   KTGTCPFSFDKLNN-YLTFNKFCLSLSPVGANCKFDVAARTRTNEQ-VVRSLYVIYEEGD  661

Query  516   ELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDA  575
              ++  P+   G    + L  + C ++N  G TG G++ ++N+  L    +   ++     
Sbjct  662   NIVGVPSDNSGVHDLSVLHLDSCTDYNIYGRTGVGIIRKTNRTLLSGLYYTS-LSGDLLG  720

Query  576   VRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV  635
              ++     I  +TPC     + +  GT      ++  + +  T           TP +  
Sbjct  721   FKNVSDGVIYSVTPCDVSAQAAVIDGTIVGAITSINSELLGLTHWTT-------TPNFYY  773

Query  636   YSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARSVASQSI  692
             YS  +       G  I +    N  +C+  I     G+C +               +   
Sbjct  774   YSIYNYTNDRTRGTAIDS----NDVDCEPVITYSNIGVCKN--------------GAFVF  815

Query  693   IAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNL  752
             I  T S G    ++  N  + IPTNFTISV  E + V  T  S+DC+ Y+C  +  C+ L
Sbjct  816   INVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNPRCNKL  873

Query  753   LLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGF------------  800
             L QY S C  + +AL   A  ++     +    +   K   ++ F               
Sbjct  874   LTQYVSACQTIEQALAMGARLENMEVDSMLFVSENALKLASVEAFNSSETLDPIYKEWPN  933

Query  801   -------NFSQILPDP-SKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDIAARDLIC  851
                        ILP   SK   RS IEDLLF+KV  +  G + + Y  C G     DL+C
Sbjct  934   IGGSWLEGLKYILPSHNSKRKYRSAIEDLLFDKVVTSGLGTVDEDYKRCTGGYDIADLVC  993

Query  852   AQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGV  911
             AQ +NG+ VLP +   + +  YT++L  G          G A+ IPFA+ +  R N + +
Sbjct  994   AQYYNGIMVLPGVANADKMTMYTASLAGGITLG---ALGGGAVAIPFAVAVQARLNYVAL  1050

Query  912   TQNVLYENQKLIANQFNSAIGKIQD--------------SLSSTASALGKLQDVVNQNAQ  957
               +VL +NQ+++A+ FN AIG I                 L++ A AL K+QDVV    Q
Sbjct  1051  QTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHXTSRGLATVAKALAKVQDVVXIQGQ  1110

Query  958   ALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAE  1017
             AL+ L  QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L  +V+Q L R AE
Sbjct  1111  ALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQTLTRQAE  1170

Query  1018  IRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTT  1077
             +RAS  LA  K++ECV  QS+R  FCG G HL S   +AP+G++F H   +P   +  T 
Sbjct  1171  VRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPTAYETVTA  1230

Query  1078  APAICH-DGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVI  1130
              P IC  DG   F       +  +F +    +++T R  Y+P++ T+ +      CDV+ 
Sbjct  1231  WPGICASDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQIEGCDVLF  1290

Query  1131  GIVNNTVYDPLQPELDS----FKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRL  1186
                  +    + P+        ++ L+ +  N T P++        NA+ +N+  EID L
Sbjct  1291  VNATVSDLPSIIPDYIDINQTVQDILENFRPNWTVPELTF---DIFNATYLNLTGEIDDL  1347

Query  1187  N--------------EVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTI  1232
                             +  N+N +L++L+ L + E Y+KWPWY+WL  + GL+ I  + +
Sbjct  1348  EFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIGLVVIFCIPL  1405

Query  1233  MLC  1235
             +L 
Sbjct  1406  LLF  1408


>sp|P24413|SPIKE_CVPRM Spike glycoprotein OS=Porcine respiratory 
coronavirus (strain RM4) OX=11148 GN=S PE=1 SV=1
Length=1225

 Score = 790 bits (2039),  Expect = 0.0, Method: Composition-based stats.
 Identities = 245/843 (29%), Positives = 385/843 (46%), Gaps = 103/843 (12%)

Query  458   KSNLKPFERDISTEIYQAGSTPCNGVE--GFNCYFPLQSYGFQPTNGVGYQPYRVVVLSF  515
             K+   PF  D     Y   +  C  +   G NC F + +      + V    Y +     
Sbjct  382   KTGTCPFSFDKLNN-YLTFNKFCLSLSPVGANCKFDVAARTR-TNDQVVRSLYVIYEEGD  439

Query  516   ELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDA  575
              ++  P+   G    + L  + C ++N  G TG G++ ++N+  L    +   ++     
Sbjct  440   SIVGVPSDNSGLHDLSVLHLDSCTDYNIYGRTGVGIIRQTNRTILSGLYYTS-LSGDLLG  498

Query  576   VRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV  635
               +     I  +TPC     + I  GT      ++  + +  T           TP +  
Sbjct  499   FTNVSDGVIYSVTPCDVSAQAAIIDGTIVGAITSINSELLGLTHWTT-------TPNFYY  551

Query  636   YSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARSVASQSI  692
             YS  +       G  IG+    N  +C+  I     G+C +               +   
Sbjct  552   YSIYNYTNDKTRGTPIGS----NDVDCEPVITYSNIGVCKN--------------GALVF  593

Query  693   IAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNL  752
             I  T S G    ++  N  + IPTNFTISV  E + V  T  S+DC+ Y+C  +  C+ L
Sbjct  594   INVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNPRCNKL  651

Query  753   LLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPI----------------KD  796
             L QY S C  + +AL   A  ++     +    +   K   +                 +
Sbjct  652   LTQYVSACQTIEQALAMGARLENMEVDSMLFVSENALKLASVEAFNSSETLDPIYKEWPN  711

Query  797   FGGF---NFSQILP-DPSKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDIAARDLIC  851
              GGF       ILP D SK   RS IEDLLF+KV  +  G + + Y  C G     DL+C
Sbjct  712   IGGFWLEGLKYILPSDNSKRKYRSAIEDLLFSKVVTSGLGTVDEDYKRCTGGYDIADLVC  771

Query  852   AQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGV  911
             AQ +NG+ VLP +   + +  YT++L  G          G A+ IPFA+ +  R N + +
Sbjct  772   AQYYNGIMVLPGVANADKMTMYTASLAGGITLG---ALGGGAVAIPFAVAVQARLNYVAL  828

Query  912   TQNVLYENQKLIANQFNSAIGKIQD--------------SLSSTASALGKLQDVVNQNAQ  957
               +VL +NQ+++A+ FN AIG I                 L++ A AL K+QDVVN   Q
Sbjct  829   QTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHQTSRGLTTVAKALAKVQDVVNTQGQ  888

Query  958   ALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAE  1017
             AL  L  QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L  +V+Q L R AE
Sbjct  889   ALRHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQTLTRQAE  948

Query  1018  IRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTT  1077
             +RAS  LA  K++ECV  QS+R  FCG G HL S   +AP+G++F H   +P   +  T 
Sbjct  949   VRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPTAYETVTA  1008

Query  1078  APAICH-DGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVI  1130
                IC  D    F       +  +F +    +++T R  Y+P++ T+ +      CDV+ 
Sbjct  1009  WSGICALDVDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQIEGCDVLF  1068

Query  1131  GIVNNTVYDPLQPELDS----FKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRL  1186
                  +    + P+        ++ L+ +  N T P++ L      NA+ +N+  EID L
Sbjct  1069  VNTTVSDLPSIIPDYIDINQTVQDILENFRPNWTVPELTL---DVFNATYLNLTGEIDDL  1125

Query  1187  N--------------EVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTI  1232
                             +  N+N ++++L+ L + E Y+KWPWY+WL  + GL+ I  + +
Sbjct  1126  EFRSEKLHNTTVELAILIDNINNTVVNLEWLNRIETYVKWPWYVWL--LIGLVVIFCIPL  1183

Query  1233  MLC  1235
             +L 
Sbjct  1184  LLF  1186


>sp|P33470|SPIKE_CVPMI Spike glycoprotein OS=Porcine transmissible 
gastroenteritis coronavirus (strain Miller) OX=33737 GN=S 
PE=3 SV=2
Length=1449

 Score = 789 bits (2038),  Expect = 0.0, Method: Composition-based stats.
 Identities = 242/843 (29%), Positives = 383/843 (45%), Gaps = 103/843 (12%)

Query  458   KSNLKPFERDISTEIYQAGSTPCNGVE--GFNCYFPLQSYGFQPTNGVGYQPYRVVVLSF  515
             K+   PF  D     Y   +  C  +   G NC F + +      + V    Y +     
Sbjct  606   KTGTCPFSFDKLNN-YLTFNKFCLSLSPVGANCKFDVAARTR-TNDQVVRSLYVIYEEGD  663

Query  516   ELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDA  575
              ++  P+   G    + L  + C ++N  G TG G++ ++N+  L    +   ++     
Sbjct  664   NIVGVPSDNSGLHDLSVLHLDSCTDYNIYGRTGVGIIRQTNRTLLSGLYYTS-LSGDLLG  722

Query  576   VRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV  635
              ++     I  +TPC     + +  GT      ++  + +  T           TP +  
Sbjct  723   FKNVSDGVIYSVTPCDVSAQAAVIDGTIVGAITSINSELLGLTHWTT-------TPNFYY  775

Query  636   YSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARSVASQSI  692
             YS  +       G  I +    N  +C+  I     G+C +               +   
Sbjct  776   YSIYNYTNDRTRGTAIDS----NDVDCEPVITYSNIGVCKN--------------GALVF  817

Query  693   IAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNL  752
             I  T S G    ++  N  + IPTNFTISV  E + V  T  S+DC+ Y+C  +  C+ L
Sbjct  818   INVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNPRCNKL  875

Query  753   LLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGF------------  800
             L QY S C  + +AL   A  ++     +    +   K   ++ F               
Sbjct  876   LTQYVSACQTIEQALAMGARLENMEVGSMLFVSENALKLASVEAFNSSETLDPIYKEWPN  935

Query  801   -------NFSQILP-DPSKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDIAARDLIC  851
                        ILP D SK   RS IEDLLF KV  +  G + + Y  C G     DL+C
Sbjct  936   IGGSWLEGLKYILPSDNSKRKYRSAIEDLLFAKVVTSGLGTVDEDYKRCTGGYDIADLVC  995

Query  852   AQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGV  911
             AQ +NG+ VLP +   + +  YT++L  G          G A+ IPFA+ +  R N + +
Sbjct  996   AQYYNGIMVLPGVANADKMTMYTASLAGGITLG---ALGGGAVAIPFAVAVQARLNYVAL  1052

Query  912   TQNVLYENQKLIANQFNSAIGKIQD--------------SLSSTASALGKLQDVVNQNAQ  957
               +VL +NQ+++A+ FN AIG I                 L++ A AL K+QDVVN   Q
Sbjct  1053  QTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHQTSRGLATVAKALAKVQDVVNTQGQ  1112

Query  958   ALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAE  1017
             AL+ L  QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L  +V+Q L R AE
Sbjct  1113  ALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQTLTRQAE  1172

Query  1018  IRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTT  1077
             +RAS  LA  K++ECV  QS+R  FCG G HL S   +AP+G++F H   +P   +  T 
Sbjct  1173  VRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPTAYETVTA  1232

Query  1078  APAICH-DGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVI  1130
                IC  DG   F       +  +F +    +++T R  Y+P++ T+ +      CDV+ 
Sbjct  1233  WAGICALDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQIEGCDVLF  1292

Query  1131  GIVNNTVYDPLQPELDS----FKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRL  1186
                  +    + P+        ++ L+ +  N T P++        NA+ +N+  EID L
Sbjct  1293  VNATVSDLPSIIPDYIDINQTVQDILENFRPNWTVPELTF---DIFNATYLNLTGEIDDL  1349

Query  1187  N--------------EVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTI  1232
                             +  N+N +L++L+ L + E Y+KWPWY+WL  + GL+ I  + +
Sbjct  1350  EFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIGLVVIFCIPL  1407

Query  1233  MLC  1235
             +L 
Sbjct  1408  LLF  1410


>sp|P18450|SPIKE_CVPFS Spike glycoprotein OS=Porcine transmissible 
gastroenteritis coronavirus (strain FS772/70) OX=11150 
GN=S PE=3 SV=2
Length=1449

 Score = 783 bits (2023),  Expect = 0.0, Method: Composition-based stats.
 Identities = 240/843 (28%), Positives = 383/843 (45%), Gaps = 103/843 (12%)

Query  458   KSNLKPFERDISTEIYQAGSTPCNGVE--GFNCYFPLQSYGFQPTNGVGYQPYRVVVLSF  515
             K+   PF  D     Y   +  C  +   G NC F + +      + V    Y +     
Sbjct  606   KTGTCPFSFDKLNN-YLTFNKFCLSLSPVGANCKFDVAARTR-ANDQVVRSLYVIYEEGD  663

Query  516   ELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDA  575
              ++  P+   G    + L  + C ++N  G +G G++ ++N+  L    +   ++     
Sbjct  664   NIVGVPSDNSGLHDLSVLHLDSCTDYNIYGRSGVGIIRQTNRTLLSGLYYTS-LSGDLLG  722

Query  576   VRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV  635
              ++     I  +TPC     + +  GT      ++  + +  T           TP +  
Sbjct  723   FKNVSDGVIYSVTPCDVSAQAAVIDGTIVGAITSINSELLGLTHWTT-------TPNFYY  775

Query  636   YSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARSVASQSI  692
             YS  +       G  I +    N  +C+  I     G+C +               +   
Sbjct  776   YSIYNYTNDMTRGTAIDS----NDVDCEPVITYSNIGVCKN--------------GALVF  817

Query  693   IAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNL  752
             I  T S G    ++  N  + IPTNFTISV  E + V  T  S+DC+ Y+C  +  C+ L
Sbjct  818   INVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNPRCNKL  875

Query  753   LLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGF------------  800
             L QY S C  + +AL   A  ++     +    +   K   ++ F               
Sbjct  876   LTQYVSACQTIEQALAVGARLENMEVDSMLFVSENALKLASVEAFNSSETLDPIYKEWPN  935

Query  801   -------NFSQILP-DPSKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDIAARDLIC  851
                        ILP D SK   RS IEDLLF+KV  +  G + + Y  C G     DL+C
Sbjct  936   IGGSWLEGLKYILPSDNSKRKYRSAIEDLLFSKVVTSGLGTVDEDYKRCTGGYDIADLVC  995

Query  852   AQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGV  911
             AQ +NG+ VLP +   + +  YT++L  G          G A+ IPFA+ +  R N + +
Sbjct  996   AQYYNGIMVLPGVANADKMTMYTASLAGGITLG---ALGGGAVAIPFAVAVQARLNYVAL  1052

Query  912   TQNVLYENQKLIANQFNSAIGKIQD--------------SLSSTASALGKLQDVVNQNAQ  957
               +VL +NQ+++A+ FN AIG I                 L++ A AL K+QDVVN   Q
Sbjct  1053  QTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHQTSRGLATVAKALAKVQDVVNTQGQ  1112

Query  958   ALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAE  1017
             AL+ L  QL +NF AISS ++DI +RLD++ A+  +DRLITGRL +L  +V+Q L R AE
Sbjct  1113  ALSHLTVQLQNNFQAISSSISDIYNRLDELSADAHVDRLITGRLTALNAFVSQTLTRQAE  1172

Query  1018  IRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTT  1077
             +RAS  LA  K++ECV  QS+R  FCG G HL S   +AP+G++F H   +P   +  T 
Sbjct  1173  VRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHAVLLPTAYETVTA  1232

Query  1078  APAICH-DGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVI  1130
                IC  DG   F       +  +F +    +++T R  Y+P++ T+ +      CDV+ 
Sbjct  1233  WAGICALDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQIEGCDVLF  1292

Query  1131  GIVNNTVYDPLQPELDS----FKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRL  1186
                  +    + P+        ++ L+ +  N T P++        NA+ +N+  EID L
Sbjct  1293  VNATLSDLPSIIPDYIDINQTVQDILENFRPNWTVPELTF---DIFNATYLNLTGEIDDL  1349

Query  1187  N--------------EVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTI  1232
                             +  N+N +L++L+ L + E Y+KWPWY+WL  + GL+ I  + +
Sbjct  1350  EFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIGLVVIFCIPL  1407

Query  1233  MLC  1235
             +L 
Sbjct  1408  LLF  1410


>sp|P36300|SPIKE_CVCAI Spike glycoprotein OS=Canine coronavirus 
(strain Insavc-1) OX=36391 GN=S PE=1 SV=1
Length=1451

 Score = 780 bits (2014),  Expect = 0.0, Method: Composition-based stats.
 Identities = 237/843 (28%), Positives = 378/843 (45%), Gaps = 104/843 (12%)

Query  458   KSNLKPFERDISTEIYQAGSTPCNGVE--GFNCYFPLQSYGFQPTNGVGYQPYRVVVLSF  515
             K+   PF  D     Y   +  C  +   G NC   + +        V    Y +     
Sbjct  609   KTGTCPFSFDKLNN-YLTFNKFCLSLNPVGANCKLDVAARTRTNEQ-VFGSLYVIYEEGD  666

Query  516   ELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDA  575
              ++  P+   G    + L  + C ++N  G TG G++ ++N   L    +   ++     
Sbjct  667   NIVGVPSDNSGLHDLSVLHLDSCTDYNIYGRTGVGIIRKTNSTLLSGLYYTS-LSGDLLG  725

Query  576   VRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV  635
              ++     +  +TPC     + +  G       ++  + +  T           TP +  
Sbjct  726   FKNVSDGVVYSVTPCDVSAQAAVIDGAIVGAMTSINSELLGLTHWTT-------TPNFYY  778

Query  636   YSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARSVASQSI  692
             YS  +       G  I      N  +C+  I     G+C +               +   
Sbjct  779   YSIYNYTNVMNRGTAID-----NDIDCEPIITYSNIGVCKN--------------GALVF  819

Query  693   IAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNL  752
             I  T S G    ++  N  + IPTNFTISV  E + V  T  S+DC  Y+C  +  C+ L
Sbjct  820   INVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCARYVCNGNPRCNKL  877

Query  753   LLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGF------------  800
             L QY S C  + +AL   A  ++     +    +   K   ++ F               
Sbjct  878   LTQYVSACQTIEQALAMGARLENMEIDSMLFVSENALKLASVEAFNSTENLDPIYKEWPN  937

Query  801   -------NFSQILPDP-SKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDIAARDLIC  851
                        ILP   SK   RS IEDLLF+KV  +  G + + Y    G     DL+C
Sbjct  938   IGGSWLGGLKDILPSHNSKRKYRSAIEDLLFDKVVTSGLGTVDEDYKRSAGGYDIADLVC  997

Query  852   AQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGV  911
             A+ +NG+ VLP +  D+ +  YT++L  G      +   G A+ IPFA+ +  R N + +
Sbjct  998   ARYYNGIMVLPGVANDDKMTMYTASLTGGITLGALS---GGAVAIPFAVAVQARLNYVAL  1054

Query  912   TQNVLYENQKLIANQFNSAIGKIQDSL--------------SSTASALGKLQDVVNQNAQ  957
               +VL +NQ+++AN FN AIG I  +               ++ A AL K+QDVVN   Q
Sbjct  1055  QTDVLNKNQQILANAFNQAIGNITQAFGKVNDAIHQTSKGLATVAKALAKVQDVVNTQGQ  1114

Query  958   ALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAE  1017
             AL+ L  QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L  +V+Q L R AE
Sbjct  1115  ALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQTLTRQAE  1174

Query  1018  IRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTT  1077
             +RAS  LA  K++ECV  QS+R  FCG G HL S   +AP+G++F H   +P   +  T 
Sbjct  1175  VRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPTAYETVTA  1234

Query  1078  APAICH-DGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVI  1130
                IC  DG   F       +  +F +    +++T R  Y+P++ T+ +      CDV+ 
Sbjct  1235  WSGICASDGSRTFGLVVEDVQLTLFRNLDEKFYLTPRTMYQPRVATSSDFVQIEGCDVLF  1294

Query  1131  GIVNNTVYDPLQPELDS----FKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRL  1186
                       + P+        ++ L+ +  N T P++ L      +A+ +N+  EI+ L
Sbjct  1295  VNGTVIELPSIIPDYIDINQTVQDILENFRPNWTVPELPL---DIFHATYLNLTGEINDL  1351

Query  1187  N--------------EVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTI  1232
                             +  N+N +L++L+ L + E Y+KWPWY+WL  + GL+ I  + I
Sbjct  1352  EFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIGLVVIFCIPI  1409

Query  1233  MLC  1235
             +L 
Sbjct  1410  LLF  1412


>sp|P15423|SPIKE_CVH22 Spike glycoprotein OS=Human coronavirus 
229E OX=11137 GN=S PE=1 SV=1
Length=1173

 Score = 769 bits (1986),  Expect = 0.0, Method: Composition-based stats.
 Identities = 251/900 (28%), Positives = 386/900 (43%), Gaps = 101/900 (11%)

Query  413   GQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEI  472
             G    +A++N         CV   +       V  N           N       ++  +
Sbjct  324   GVNITLANFN---ETKGPLCVDTSHFTTKYVAVYANVGRWSASINTGNCPFSFGKVNNFV  380

Query  473   YQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTN  532
                            C  P+ +             Y        +   P  V G     N
Sbjct  381   KFGSVCFSLKDIPGGCAMPIVANWAYSKYYTIGSLYVSWSDGDGITGVPQPVEGVSSFMN  440

Query  533   LVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSF  592
             +  +KC  +N   ++G GV+  SN  FL    +           +D     I  ITPC  
Sbjct  441   VTLDKCTKYNIYDVSGVGVIRVSNDTFLNGITYTSTS-GNLLGFKDVTKGTIYSITPC--  497

Query  593   GGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG  652
                       N  +Q+ V  Q         A+    L+  +  Y      F         
Sbjct  498   ----------NPPDQLVVYQQ---------AVVGAMLSENFTSYG-----FSNVVELPKF  533

Query  653   AEHVNNSYECDIPI----GAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYS  708
                 N +Y C   +      G+CA        PR     +  +I+   +S          
Sbjct  534   FYASNGTYNCTDAVLTYSSFGVCADGSIIAVQPRNVSYDSVSAIVTANLS----------  583

Query  709   NNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALT  768
                  IP+N+T SV  E L ++ T   VDC+ Y+C  +  C  LL QY S C  +  AL 
Sbjct  584   -----IPSNWTTSVQVEYLQITSTPIVVDCSTYVCNGNVRCVELLKQYTSACKTIEDALR  638

Query  769   GIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPD----PSKPSKRSFIEDLLFN  824
               A  +  +  E+    K+ +    +  FG +N S ++P      S+ + RS IED+LF+
Sbjct  639   NSARLESADVSEMLTFDKKAFTLANVSSFGDYNLSSVIPSLPTSGSRVAGRSAIEDILFS  698

Query  825   KVTLADAGFIKQ-YGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTIT  883
             K+  +  G +   Y  C   ++  DL CAQ +NG+ VLP +   E +A YT +L+ G   
Sbjct  699   KLVTSGLGTVDADYKKCTKGLSIADLACAQYYNGIMVLPGVADAERMAMYTGSLIGGIAL  758

Query  884   SGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLS----  939
              G T    +A+ IPF++ +  R N + +  +VL ENQK++A  FN A+  I D+ +    
Sbjct  759   GGLT----SAVSIPFSLAIQARLNYVALQTDVLQENQKILAASFNKAMTNIVDAFTGVND  814

Query  940   ----------STASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA  989
                       + A+AL K+QDVVNQ   +LN L  QL  NF AISS +  I  RLD ++A
Sbjct  815   AITQTSQALQTVATALNKIQDVVNQQGNSLNHLTSQLRQNFQAISSSIQAIYDRLDTIQA  874

Query  990   EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHL  1049
             + Q+DRLITGRL +L  +V+  L +  E+RAS  LA  K++ECV  QSKR  FCG G H+
Sbjct  875   DQQVDRLITGRLAALNVFVSHTLTKYTEVRASRQLAQQKVNECVKSQSKRYGFCGNGTHI  934

Query  1050  MSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHF----PREGVFVSNGTHWFVT  1105
              S   +AP G+VFLH   +P Q K+      +C DG   +    P   ++   G ++ +T
Sbjct  935   FSIVNAAPEGLVFLHTVLLPTQYKDVEAWSGLCVDGTNGYVLRQPNLALY-KEGNYYRIT  993

Query  1106  QRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFK---EELDKYFKNHTSP  1162
              R  +EP+I T  +     NC+V    ++ +    + PE        +EL     N+T P
Sbjct  994   SRIMFEPRIPTMADFVQIENCNVTFVNISRSELQTIVPEYIDVNKTLQELSYKLPNYTVP  1053

Query  1163  DVDLGDISGINASVVNIQKEID--------------RLNEVAKNLNESLIDLQELGKYEQ  1208
             D+    +   N +++N+  EI               +L  +  N+N +L+DL+ L + E 
Sbjct  1054  DL---VVEQYNQTILNLTSEISTLENKSAELNYTVQKLQTLIDNINSTLVDLKWLNRVET  1110

Query  1209  YIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSC-GSCCKFDE---DDSEPV  1264
             YIKWPW++WL     LI +V + ++ CC T CC       S    CC+  +    D E +
Sbjct  1111  YIKWPWWVWLCISVVLIFVVSMLLLCCCSTGCCGFFSCFASSIRGCCESTKLPYYDVEKI  1170


>sp|Q6Q1S2|SPIKE_CVHNL Spike glycoprotein OS=Human coronavirus 
NL63 OX=277944 GN=S PE=1 SV=1
Length=1356

 Score = 754 bits (1947),  Expect = 0.0, Method: Composition-based stats.
 Identities = 236/811 (29%), Positives = 359/811 (44%), Gaps = 87/811 (11%)

Query  486   FNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNG  545
              +C FPL++     +  +    Y        +   P  V G ++ +NLV N C  +N   
Sbjct  575   GSCNFPLEATWHYTSYTIVGALYVTWSEGNSITGVPYPVSGIREFSNLVLNNCTKYNIYD  634

Query  546   LTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTS  605
               GTG++  SN+       +  +        ++  T  I  +TPC+      +   +   
Sbjct  635   YVGTGIIRSSNQSLAGGITYVSNS-GNLLGFKNVSTGNIFIVTPCNQPDQVAVYQQSIIG  693

Query  606   NQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIP  665
                AV        E    +      P +   S G N       C       +N       
Sbjct  694   AMTAV-------NESRYGLQNLLQLPNFYYVSNGGN------NCTTAVMTYSN-------  733

Query  666   IGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTE  725
                GICA        PR +      +II   +S               IP+N+T SV  E
Sbjct  734   --FGICADGSLIPVRPRNSSDNGISAIITANLS---------------IPSNWTTSVQVE  776

Query  726   ILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQV  785
              L ++ T   VDC  Y+C  +  C NLL QY S C  +  AL   A  +  +   +    
Sbjct  777   YLQITSTPIVVDCATYVCNGNPRCKNLLKQYTSACKTIEDALRLSAHLETNDVSSMLTFD  836

Query  786   KQIYKTPPIKDFGGFNFSQILPD----PSKPSKRSFIEDLLFNKVTLADAGFIK-QYGDC  840
                +    +  FG +N S +LP      S+ + RS +EDLLF+KV  +  G +   Y  C
Sbjct  837   SNAFSLANVTSFGDYNLSSVLPQRNIRSSRIAGRSALEDLLFSKVVTSGLGTVDVDYKSC  896

Query  841   LGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAM  900
                ++  DL CAQ +NG+ VLP +   E +A YT +L+ G +  G T    +A  IPF++
Sbjct  897   TKGLSIADLACAQYYNGIMVLPGVADAERMAMYTGSLIGGMVLGGLT----SAAAIPFSL  952

Query  901   QMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTA--------------SALG  946
              +  R N + +  +VL ENQK++A  FN AI  I  S SS                 AL 
Sbjct  953   ALQARLNYVALQTDVLQENQKILAASFNKAINNIVASFSSVNDAITQTAEAIHTVTIALN  1012

Query  947   KLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQT  1006
             K+QDVVNQ   ALN L  QL  NF AIS+ +  I  RLD ++A+ Q+DRLITGRL +L  
Sbjct  1013  KIQDVVNQQGSALNHLTSQLRHNFQAISNSIQAIYDRLDSIQADQQVDRLITGRLAALNA  1072

Query  1007  YVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVT  1066
             +V+Q L +  E+R S  LA  K++ECV  QS R  FCG G H+ S   SAP G++FLH  
Sbjct  1073  FVSQVLNKYTEVRGSRRLAQQKINECVKSQSNRYGFCGNGTHIFSIVNSAPDGLLFLHTV  1132

Query  1067  YVPAQEKNFTTAPAICHDGKAHF----PREGVFVSNGTHWFVTQRNFYEPQIITTDNTFV  1122
              +P   KN      IC DG   +    P   ++ S+   + VT R  ++P++    +   
Sbjct  1133  LLPTDYKNVKAWSGICVDGIYGYVLRQPNLVLY-SDNGVFRVTSRVMFQPRLPVLSDFVQ  1191

Query  1123  SGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKE  1182
               NC+V    ++      + P+     + L ++ +N         D++  N + +N+  E
Sbjct  1192  IYNCNVTFVNISRVELHTVIPDYVDVNKTLQEFAQNLPKYVKPNFDLTPFNLTYLNLSSE  1251

Query  1183  ID--------------RLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIV  1228
             +                L  +   +N + +DL+ L ++E YIKWPW++WL      + ++
Sbjct  1252  LKQLEAKTASLFQTTVELQGLIDQINSTYVDLKLLNRFENYIKWPWWVWLIISVVFVVLL  1311

Query  1229  MVTIMLCCMTSCCSCL-------KGCCSCGS  1252
              + +  C  T CC C        +GCC CGS
Sbjct  1312  SLLVFCCLSTGCCGCCNCLTSSMRGCCDCGS  1342


>sp|Q0Q466|SPIKE_BC512 Spike glycoprotein OS=Bat coronavirus 512/2005 
OX=693999 GN=S PE=3 SV=1
Length=1371

 Score = 709 bits (1829),  Expect = 0.0, Method: Composition-based stats.
 Identities = 236/816 (29%), Positives = 361/816 (44%), Gaps = 99/816 (12%)

Query  463   PFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGV---GYQPYRVVVLSFELLH  519
             PF R+     Y      C      +    L+ Y +     V       Y        +  
Sbjct  571   PFNRETINN-YLTFGRICFSTSPADGACELKYYVWNTIGAVSHLAGTLYVQHTKGDIITG  629

Query  520   APATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDP  579
              P  + G    + L  + C  +   G  G GV+  +N+ FL    +  +      A ++ 
Sbjct  630   TPKPLQGLNDISELHLDTCTTYTIYGFRGDGVIRLTNQTFLSGVYYTSESGQLL-AFKNV  688

Query  580   QTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTG  639
              T +I  +TPC                   ++ Q     +  V + +          +  
Sbjct  689   TTGQIYSVTPCQ------------------LVQQVAFVEDRIVGVIS---------SANN  721

Query  640   SNVFQTRAGCLIGAEHVNNSYECDIP----IGAGICASYQTQTNSPRRARSVASQSIIAY  695
             +  F +         H N++  C  P       G+C S      SP+ A+          
Sbjct  722   TGFFNSTRTFPGFYYHSNDTTNCTSPRLVYSNIGVCTSGAIGLLSPKAAQPQVQPMFQ--  779

Query  696   TMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQ  755
                            +I+IPTNFT+SV TE + +     SVDC MY+C  +  C  LL Q
Sbjct  780   --------------GNISIPTNFTMSVRTEYIQLFNKPVSVDCAMYVCNGNDRCKQLLSQ  825

Query  756   YGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDF--GGFNFSQILPDPSKPS  813
             Y S C  +  AL   A  +      +     +  K   I  F  GG+NF+ ILP  + P 
Sbjct  826   YTSACKNIESALQLSARLESMEVNSMLTVSDEALKLATISQFPGGGYNFTNILP--ANPG  883

Query  814   KRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQ  872
              RS IED+LF+KV  +  G + + Y  C   ++  DL CAQ +NG+ VLP +   E +  
Sbjct  884   ARSVIEDILFDKVVTSGLGTVDEDYKRCSNGLSIADLACAQHYNGIMVLPGVADWEKVHM  943

Query  873   YTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIG  932
             Y+++L+ G    G T    +A  +PF+  +  R N + +  +VL  NQ+++AN FNSAI 
Sbjct  944   YSASLVGGMTLGGIT----SAAALPFSYAVQARLNYVALQTDVLQRNQQMLANSFNSAIS  999

Query  933   KIQ--------------DSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLN  978
              I                 L++ A AL K+QDVVN    AL+ L  QL +NF AIS+ + 
Sbjct  1000  NITLAFESVNNAIYQTSAGLNTVAEALSKVQDVVNGQGNALSQLTVQLQNNFQAISNSIG  1059

Query  979   DILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSK  1038
             DI SRLD++ A+ Q+DRLITGRL +L  +V Q L + AE++AS  LA  K++ECV  QS 
Sbjct  1060  DIYSRLDQITADAQVDRLITGRLAALNAFVAQSLTKYAEVQASRTLAKQKVNECVKSQSP  1119

Query  1039  RVDFCGK-GYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGK-AHFPREGVFV  1096
             R  FCG  G H+ S  Q+AP G++FLH   VP    N T    +C D   A   R+  FV
Sbjct  1120  RYGFCGDEGEHIFSLTQAAPQGLMFLHTVLVPNGFINVTAVTGLCVDETIAMTLRQSGFV  1179

Query  1097  S--NGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFK---EE  1151
                   ++ V+ R  +EP+     +      C +    + N     + P+        +E
Sbjct  1180  LFVQNGNYLVSPRKMFEPRRPEVADFVQVKTCTISYVNITNNQLPDIIPDYVDVNKTIDE  1239

Query  1152  LDKYFKNHTSPDVDLGDISGINASVVNIQKEI--------------DRLNEVAKNLNESL  1197
             +     N+T PD+ L      N + +N+  EI              + L ++ +N+N +L
Sbjct  1240  ILANLPNNTVPDLPL---DVFNQTFLNLTGEIADLEARSESLKNTSEELRQLIQNINNTL  1296

Query  1198  IDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIM  1233
             +DLQ L + E +IKWPWY+WL  +  LI +V + + 
Sbjct  1297  VDLQWLNRVETFIKWPWYVWLAIVIALILVVSLLVF  1332


>sp|Q91AV1|SPIKE_PEDV7 Spike glycoprotein OS=Porcine epidemic 
diarrhea virus (strain CV777) OX=229032 GN=S PE=1 SV=1
Length=1383

 Score = 707 bits (1825),  Expect = 0.0, Method: Composition-based stats.
 Identities = 253/980 (26%), Positives = 401/980 (41%), Gaps = 168/980 (17%)

Query  293   LDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYA  352
              DP+S+ KC+  +F ++ G Y  S+                NL    +  +     S   
Sbjct  462   DDPVSQLKCSQVAFDLDDGFYPISS---------------RNLLSHEQPISFVTLPS---  503

Query  353   WNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAP  412
                        +     N    + F   G+S   L     ++   + F            
Sbjct  504   ----------FNDHSFVNITVSAAFG--GLSSANLVA---SDTTINGFS-----------  537

Query  413   GQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEI  472
                      ++ +        + +N  N       +Y Y+ +  + SN     + ++  +
Sbjct  538   ---------SFCVDTRQFTITLFYNVTN-------SYGYVSKS-QDSNCPFTLQSVNDYL  580

Query  473   YQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTN  532
               +       +    C   L  Y    +       Y        +   P  + G    + 
Sbjct  581   SFSKFCVSTSLLAGACTIDLFGYPAFGSGVKLTSLYFQFTKGELITGTPKPLEGITDVSF  640

Query  533   LVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSF  592
             +  + C  +   G  G G++T +N   L    +  D      A ++  +  +  +TPCSF
Sbjct  641   MTLDVCTKYTIYGFKGEGIITLTNSSILAGVYYTSDSGQLL-AFKNVTSGAVYSVTPCSF  699

Query  593   GGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG  652
                         S Q A +  D+                   + S  ++ F         
Sbjct  700   ------------SEQAAYVNDDI----------------VGVISSLSNSTFNNTRELPGF  731

Query  653   AEHVNNSYECDIPI----GAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYS  708
               H N+   C  P+      G+C S            S   Q  IA T++          
Sbjct  732   FYHSNDGSNCTEPVLVYSNIGVCKSGSIG-----YVPSQYGQVKIAPTVT----------  776

Query  709   NNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALT  768
               +I+IPTNF++S+ TE L +  T  SVDC  Y+C  ++ C  LL QY + C  +  AL 
Sbjct  777   -GNISIPTNFSMSIRTEYLQLYNTPVSVDCATYVCNGNSRCKQLLTQYTAACKTIESALQ  835

Query  769   GIAVEQDKNTQEVFAQVKQIYKTPPIKDF--GGFNFSQILP----DPSKPS---KRSFIE  819
               A  +      +    ++  +   I  F   G+NF+ +L     DP+      KRS IE
Sbjct  836   LSARLESVEVNSMLTISEEALQLATISSFNGDGYNFTNVLGASVYDPASGRVVQKRSVIE  895

Query  820   DLLFNKVTLADAGFIKQ-YGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALL  878
             DLLFNKV     G + + Y  C    +  DL+CAQ ++G+ VLP ++  E +  Y+++L+
Sbjct  896   DLLFNKVVTNGLGTVDEDYKRCSNGRSVADLVCAQYYSGVMVLPGVVDAEKLHMYSASLI  955

Query  879   AGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQ---  935
              G    G T     A  +PF+  +  R N + +  +VL  NQ+L+A  FNSAIG I    
Sbjct  956   GGMALGGITA----AAALPFSYAVQARLNYLALQTDVLQRNQQLLAESFNSAIGNITSAF  1011

Query  936   -----------DSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRL  984
                          L++ A AL K+Q+VVN    ALN L  QL  NF AISS ++DI SRL
Sbjct  1012  ESVKEAISQTSKGLNTVAHALTKVQEVVNSQGSALNQLTVQLQHNFQAISSSIDDIYSRL  1071

Query  985   DKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFC-  1043
             D + A+VQ+DRLITGRL +L  +V Q L +  E++AS  LA  K++ECV  QS+R  FC 
Sbjct  1072  DILSADVQVDRLITGRLSALNAFVAQTLTKYTEVQASRKLAQQKVNECVKSQSQRYGFCG  1131

Query  1044  GKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHF----PREGVF----  1095
             G G H+ S  Q+AP G++FLH   VP    N      +C +G+       P   +F    
Sbjct  1132  GDGEHIFSLVQAAPQGLLFLHTVLVPGDFVNVLAIAGLCVNGEIALTLREPGLVLFTHEL  1191

Query  1096  -VSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFK---EE  1151
                  T +FV+ R  +EP+  T  +     +C V    + +     + P+        +E
Sbjct  1192  QTYTATEYFVSSRRMFEPRKPTVSDFVQIESCVVTYVNLTSDQLPDVIPDYIDVNKTLDE  1251

Query  1152  LDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNE--------------VAKNLNESL  1197
             +     N T P + L      NA+ +N+  EI  L +              +  N+N +L
Sbjct  1252  ILASLPNRTGPSLPL---DVFNATYLNLTGEIADLEQRSESLRNTTEELRSLINNINNTL  1308

Query  1198  IDLQELGKYEQYIKWPWYIW  1217
             +DL+ L + E YIKWPW++W
Sbjct  1309  VDLEWLNRVETYIKWPWWVW  1328


>sp|P12651|SPIKE_IBVM Spike glycoprotein OS=Avian infectious bronchitis 
virus (strain M41) OX=11127 GN=S PE=3 SV=1
Length=1162

 Score = 697 bits (1798),  Expect = 0.0, Method: Composition-based stats.
 Identities = 269/1120 (24%), Positives = 435/1120 (39%), Gaps = 116/1120 (10%)

Query  147   KNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSK  206
              +  +W  S+F       + T  +V+  +  D     G  +     V    +G    +  
Sbjct  87    SSGMAWSSSQFCTAHCNFSDTTVFVTHCYKYDGCPITGMLQKNFLRVSAMKNGQL--FYN  144

Query  207   HTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYY  266
              T         + F  +  L  + +  ++           S      +    T       
Sbjct  145   LTVSVAKYPTFKSFQCVNNLTSVYLNGDLVYTSNETTDVTSAGVYFKAGGPIT-------  197

Query  267   VGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQ-TSNFRVQPTES  325
                +  +   L Y  NGT  D + C   P     C   +     G Y   ++  V+    
Sbjct  198   -YKVMRKVKALAYFVNGTAQDVILCDGSPRGLLACQYNTGNFSDGFYPFINSSLVKQKFI  256

Query  326   IVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPT  385
             + R  ++                               + +   ++ +F        +P+
Sbjct  257   VYRENSV-------------------------------NTTFTLHNFTFHNETGANPNPS  285

Query  386   KLND-LCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSK  444
              + + L +    A S                  ++ + YK  +   G      +  L++ 
Sbjct  286   GVQNILTYQTQTAQSGYYNF---------NFSFLSSFVYKESNFMYGSYHPSCNFRLETI  336

Query  445   VGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQP--TNG  502
               G   +   L       P +      ++   +T C              Y  +      
Sbjct  337   NNGL--WFNSLSVSIAYGPLQGGCKQSVFSGRATCCYAYSYGGPSLCKGVYSGELDLNFE  394

Query  503   VGYQPYRVVVLSFELLHAPAT-VCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLP  561
              G   Y        +  A    V       N+  N CV++N  G TG G +T      + 
Sbjct  395   CGLLVYVTKSGGSRIQTATEPPVITRHNYNNITLNTCVDYNIYGRTGQGFITNVTDSAVS  454

Query  562   FQQF------GRDIADTTDAV--RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ  613
             +           D + + D    +    L    + PC       +  G      V +L  
Sbjct  455   YNYLADAGLAILDTSGSIDIFVVQGEYGLTYYKVNPCEDVNQQFVVSGGK---LVGIL--  509

Query  614   DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICAS  673
                           QL          +   + R           N   C        C  
Sbjct  510   ------TSRNETGSQLLENQFYIKITNGTRRFRR------SITENVANCPYVSYGKFCIK  557

Query  674   YQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTK  733
                            S + I           +     ++ IP +F ++VT E +   M K
Sbjct  558   PD------------GSIATIVPKQLEQFVAPLLNVTENVLIPNSFNLTVTDEYIQTRMDK  605

Query  734   TSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQI-YKTP  792
               ++C  Y+CG+S +C +L  QYG  C  +   +  I  ++D      ++  K   + TP
Sbjct  606   VQINCLQYVCGNSLDCRDLFQQYGPVCDNILSVVNSIGQKEDMELLNFYSSTKPAGFNTP  665

Query  793   PIKDF--GGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAA--RD  848
              + +   G FN S +L  PS P +RSFIEDLLF  V          Y +C        +D
Sbjct  666   FLSNVSTGEFNISLLLTTPSSPRRRSFIEDLLFTSVESVGLPTDDAYKNCTAGPLGFLKD  725

Query  849   LICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNG  908
             L CA+++NGL VLPP++T EM   YTS+L+A     G T     A  IPFA Q+  R N 
Sbjct  726   LACAREYNGLLVLPPIITAEMQTLYTSSLVASMAFGGITA----AGAIPFATQLQARINH  781

Query  909   IGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSS  968
             +G+TQ++L +NQ+ IA  FN AIG++Q+   ST+ AL ++QDVVN+ +  L   +  L+ 
Sbjct  782   LGITQSLLLKNQEKIAASFNKAIGRMQEGFRSTSLALQQIQDVVNKQSAILTETMASLNK  841

Query  969   NFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATK  1028
             NFGAISSV+ +I  +LD ++A  Q+DRLITGRL SL    + +      +     LA  K
Sbjct  842   NFGAISSVIQEIYQQLDAIQANAQVDRLITGRLSSLSVLASAKQAEHIRVSQQRELATQK  901

Query  1029  MSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICH-----  1083
             ++ECV  QS R  FCG G H+++ PQ+AP+G+VF+H +Y P    N T     C      
Sbjct  902   INECVKSQSIRYSFCGNGRHVLTIPQNAPNGIVFIHFSYTPDSFVNVTAIVGFCVKPANA  961

Query  1084  DGKAHFPR--EGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP-  1140
                A  P    G+F+     +++T R+ Y P+ IT  +     +C      VN TV    
Sbjct  962   SQYAIVPANGRGIFIQVNGSYYITARDMYMPRAITAGDIVTLTSCQANYVSVNKTVITTF  1021

Query  1141  LQPELDSFKEELDKYFKN--HTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLI  1198
             +  +   F +EL K++ +  H  PD D  + +     +++I  EIDR+  V + LN+SLI
Sbjct  1022  VDNDDFDFNDELSKWWNDTKHELPDFDKFNYT---VPILDIDSEIDRIQGVIQGLNDSLI  1078

Query  1199  DLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMT  1238
             DL++L   + YIKWPWY+WL      I  +++   +  MT
Sbjct  1079  DLEKLSILKTYIKWPWYVWLAIAFATIIFILILGWVFFMT  1118


>sp|P12722|SPIKE_IBVD2 Spike glycoprotein OS=Avian infectious 
bronchitis virus (strain D274) OX=11124 GN=S PE=3 SV=1
Length=1154

 Score = 689 bits (1778),  Expect = 0.0, Method: Composition-based stats.
 Identities = 256/990 (26%), Positives = 396/990 (40%), Gaps = 106/990 (11%)

Query  277   LKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQ-TSNFRVQPTESIVRFPNITNL  335
             L Y  NGT  D + C   P     C   +     G Y  T++  V+    + R       
Sbjct  208   LAYFVNGTAQDVILCDGSPTGLLACQYNTGNFSDGFYPFTNSSLVKEKFIVYR-------  260

Query  336   CPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNV  395
                      +   +         SN V++ +                + +   +L F+  
Sbjct  261   --------ESSVNTTLELTNFTFSN-VSNATPNTGGVQTIQLYQTSTAQSGYYNLNFS--  309

Query  396   YADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRL  455
                                   ++ + YK  D   G         L++   G   +   L
Sbjct  310   ---------------------FLSSFIYKASDYMYGSYHPSCKFRLETINNGL--WFNSL  346

Query  456   FRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSF  515
                    P +      ++   +T C              Y  + T          V  + 
Sbjct  347   SVSLGYGPIQGGCKQSVFANRATCCYAYSYNGPSLCKGVYRGELTKSFECGLLVFVTKTD  406

Query  516   ----ELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQF------  565
                 +  + P T+       N+  ++CV +N  G  G G +T      + +         
Sbjct  407   GSRIQTRNEPFTLT-QHNYNNITLDRCVEYNIYGRVGQGFITNVTNYAINYNYLADGGMA  465

Query  566   GRDIADTTDAV--RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVA  623
               D +   D    +    L    + PC       +  G      V +L            
Sbjct  466   ILDTSGAIDIFVVQGEYGLNYYKVNPCEDVNQQFVVSGGK---LVGIL--------TSRN  514

Query  624   IHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRR  683
                 Q           +   ++R               C        C            
Sbjct  515   ETGSQPLENQFYIKIINGTRRSRRSITGNV------TNCPYVTYGKFCIKPD--------  560

Query  684   ARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYIC  743
                  S S I           +     ++ IP +F ++VT E +   M K  ++C  Y+C
Sbjct  561   ----GSISTIVPKELEHFVAPLLNVTENVLIPDSFNLTVTDEYIQTRMDKVQINCLQYVC  616

Query  744   GDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQI-YKTPPIKDF--GGF  800
             G+S EC  L  QYG  C  +   +  +  ++D      ++  K   + TP + +   G F
Sbjct  617   GNSLECRKLFQQYGPVCDNILSVVNSVGQKEDMELLHFYSSTKPSGFNTPVLSNVSTGEF  676

Query  801   NFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAA--RDLICAQKFNGL  858
             N S +L  PS  S RSFIEDLLF  V          Y  C        +DL CA+++NGL
Sbjct  677   NISLLLTPPSSASGRSFIEDLLFTSVESVGLPTDDAYKKCTAGPLGFLKDLACAREYNGL  736

Query  859   TVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYE  918
              VLPP++T EM   YTS+L+A     G T    +   IPFA Q+  R N +G+TQ++L +
Sbjct  737   LVLPPIITAEMQTLYTSSLVASMAFGGIT----SVGAIPFATQLQARINHLGITQSLLLK  792

Query  919   NQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLN  978
             NQ+ IA  FN AIG +Q+   ST+ AL ++QDVVN+ +  L   +  L+ NFGAISSVL 
Sbjct  793   NQEKIAASFNKAIGHMQEGFRSTSLALQQIQDVVNKQSSILTETMASLNKNFGAISSVLQ  852

Query  979   DILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSK  1038
             DI  +LD ++A+ Q+DR+ITGRL SL    + +      +     LA  K++ECV  QS 
Sbjct  853   DIYQQLDSIQADAQVDRIITGRLSSLSVLASAKQAEYYRVSQQRELATQKINECVKSQSI  912

Query  1039  RVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHD-----GKAHFPR--  1091
             R  FCG G H+++ PQ+AP+G+VF+H TY P    N T     C +       A  P   
Sbjct  913   RYSFCGNGRHVLTIPQNAPNGIVFIHFTYTPESFVNVTAIVGFCVNPANASQYAIVPANG  972

Query  1092  EGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP-LQPELDSFKE  1150
              G+F+     +++T R+ Y P+ IT  +     +C      VN TV    +  +   F +
Sbjct  973   RGIFIQVNGSYYITARDMYMPRDITAGDIVTLTSCQANYVSVNKTVITTFVDNDDFDFDD  1032

Query  1151  ELDKYFKN--HTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQ  1208
             EL K++ +  H  PD D  + +     +++I  EIDR+  V + LN+SLIDL+ L   + 
Sbjct  1033  ELSKWWNDTKHELPDFDEFNYT---VPILDIGSEIDRIQGVIQGLNDSLIDLETLSILKT  1089

Query  1209  YIKWPWYIWLGFIAGLIAIVMVTIMLCCMT  1238
             YIKWPWY+WL      I  +++   L  MT
Sbjct  1090  YIKWPWYVWLAIAFATIIFILILGWLFFMT  1119


>sp|P05135|SPIKE_IBV6 Spike glycoprotein OS=Avian infectious bronchitis 
virus (strain 6/82) OX=11121 GN=S PE=3 SV=1
Length=1163

 Score = 689 bits (1777),  Expect = 0.0, Method: Composition-based stats.
 Identities = 257/990 (26%), Positives = 396/990 (40%), Gaps = 106/990 (11%)

Query  277   LKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQ-TSNFRVQPTESIVRFPNITNL  335
             L Y  NGT  D + C   P     C   +     G Y  T++  V+    + R       
Sbjct  208   LAYFVNGTAQDVILCDGSPTGLLACQYNTGNFSDGFYPFTNSSLVKEKFIVYR-------  260

Query  336   CPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNV  395
                      +   +         SN V++ +                         +  +
Sbjct  261   --------ESSVNTTLELTNFTFSN-VSNATPNTGGVQTIQL--------------YQTI  297

Query  396   YADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRL  455
              A S                  ++ + YK  D   G         L++   G   +   L
Sbjct  298   TAQSGYYNL---------NFSFLSSFIYKASDYMYGSYHPSCKFRLETINNGL--WFNSL  346

Query  456   FRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSF  515
                    P +      ++   +T C              Y  + T          V  + 
Sbjct  347   SVSLGYGPIQGGCKQSVFANRATCCYAYSYNGPSLCKGVYRGELTKSFECGLLVFVTKTD  406

Query  516   ----ELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQF------  565
                 +  + P T+       N+  ++CV +N  G  G G +T      + +         
Sbjct  407   GSRIQTRNEPFTLT-QHNYNNITLDRCVEYNIYGRVGQGFITNVTNYAINYNYLADGGMA  465

Query  566   GRDIADTTDAV--RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVA  623
               D +   D    +    L    + PC       +  G      V +L            
Sbjct  466   ILDTSGAIDIFVVQGEYGLNYYKVNPCEDVNQQFVVSGGK---LVGIL--------TSRN  514

Query  624   IHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRR  683
                 Q           +   ++R               C        C            
Sbjct  515   ETGSQPLENQFYIKIINGTRRSRRSITGNV------TNCPYVTYGKFCIKPD--------  560

Query  684   ARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYIC  743
                  S S I           +     ++ IP +F ++VT E +   M K  ++C  Y+C
Sbjct  561   ----GSISTIVPKELEHFVAPLLNVTENVLIPDSFNLTVTDEYIQTRMDKVQINCLQYVC  616

Query  744   GDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQI-YKTPPIKDF--GGF  800
             G+S EC  L  QYG  C  +   +  +  ++D      ++  K   + TP + +   G F
Sbjct  617   GNSLECRKLFQQYGPVCDNILSVVNSVGQKEDMELLYFYSSTKPSGFNTPVLSNVSTGEF  676

Query  801   NFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAA--RDLICAQKFNGL  858
             N S +L  PS  S RSFIEDLLF  V          Y  C        +DL CA+++NGL
Sbjct  677   NISLLLTPPSSASGRSFIEDLLFTSVESVGLPTDDAYKKCTAGPLGFLKDLACAREYNGL  736

Query  859   TVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYE  918
              VLPP++T EM   YTS+L+A     G T    +A  IPFA Q+  R N +G+TQ++L++
Sbjct  737   LVLPPIITAEMQTLYTSSLVASMAFGGIT----SAGAIPFATQLQARINHLGITQSLLFK  792

Query  919   NQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLN  978
             NQ+ IA  FN AIG +Q+   ST+ AL ++QDVVN+ +  L   +  L+ NFGAISSVL 
Sbjct  793   NQEKIAASFNKAIGHMQEGFRSTSLALQQIQDVVNKQSSILTETMASLNKNFGAISSVLQ  852

Query  979   DILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSK  1038
             DI  +LD ++A+ Q+DR+ITGRL SL    + +      +     LA  K++ECV  QS 
Sbjct  853   DIYQQLDSIQADAQVDRIITGRLSSLSVLASAKQAEYYRVSQQRELATQKINECVKSQSI  912

Query  1039  RVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHD-----GKAHFPR--  1091
             R  FCG G H+++ PQ+AP+G+VF+H TY P    N T     C +       A  P   
Sbjct  913   RYSFCGNGRHVLTIPQNAPNGIVFIHFTYTPESFVNVTAIVGFCVNPANASQYAIVPANG  972

Query  1092  EGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP-LQPELDSFKE  1150
              G+F+     +++T R+ Y P+ IT  +     +C      VN TV    +  +   F +
Sbjct  973   RGIFIQVNGSYYITARDMYMPRDITAGDIVTLTSCQANYVSVNKTVITTFVDNDDFDFDD  1032

Query  1151  ELDKYFKN--HTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQ  1208
             EL K++ +  H  PD D  + +     +++I  EIDR+  V + LN+SLIDL+ L   + 
Sbjct  1033  ELSKWWNDTKHELPDFDEFNYT---VPILDIGSEIDRIQGVIQGLNDSLIDLETLSILKT  1089

Query  1209  YIKWPWYIWLGFIAGLIAIVMVTIMLCCMT  1238
             YIKWPWY+WL      I  ++V   +  MT
Sbjct  1090  YIKWPWYVWLAIAFLTIIFILVLCWIFFMT  1119


>sp|P12650|SPIKE_IBVK Spike glycoprotein OS=Avian infectious bronchitis 
virus (strain KB8523) OX=11126 GN=S PE=3 SV=1
Length=1162

 Score = 688 bits (1776),  Expect = 0.0, Method: Composition-based stats.
 Identities = 260/990 (26%), Positives = 402/990 (41%), Gaps = 106/990 (11%)

Query  277   LKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQ-TSNFRVQPTESIVRFPNITNL  335
             L Y  NGT  D + C   P     C   +     G Y  T++  V+    + R  ++   
Sbjct  207   LAYFVNGTAQDVILCDGSPRGLLACQYNTGNFSDGFYPFTNSSLVKQKFIVYRENSV---  263

Query  336   CPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDL-CFTN  394
                                         + +   ++ +F        +P+ + ++  +  
Sbjct  264   ----------------------------NTTFTLHNFTFHNETGANPNPSGVQNIQTYQT  295

Query  395   VYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYR  454
               A S                  ++ + YK  +   G      S  L++   G   +   
Sbjct  296   QTAQSGYYNF---------NFSFLSSFVYKESNFMYGSYHPSCSFRLETINNGL--WFNS  344

Query  455   LFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQP--TNGVGYQPYRVVV  512
             L       P +      ++   +T C              Y  +       G   Y    
Sbjct  345   LSVSIAYGPLQGGCKQSVFSGRATCCYAYSYGGPLLCKGVYSGELDHNFECGLLVYVTKS  404

Query  513   LSFELLHAPAT-VCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQF------  565
                 +  A    V       N+  N CV++N  G  G G +T      + +         
Sbjct  405   GGSRIQTATEPPVITQHNYNNITLNTCVDYNIYGRIGQGFITNVTDSAVSYNYLADAGLA  464

Query  566   GRDIADTTDAV--RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVA  623
               D + + D    +    L    + PC       +  G      V +L            
Sbjct  465   ILDTSGSIDIFVVQSEYGLNYYKVNPCEDVNQQFVVSGGK---LVGIL--------TSRN  513

Query  624   IHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRR  683
                 QL          +   + R       E+      C        C            
Sbjct  514   ETGSQLLENQFYIKITNGTRRFRRSITESVEN------CPYVSYGKFCIKPD--------  559

Query  684   ARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYIC  743
                  S S I           +     ++ IP +F ++VT E +   M K  ++C  YIC
Sbjct  560   ----GSISTIVPKYLEQFVAPLLNVTENVLIPNSFNLTVTDEYIQTRMDKVQINCLQYIC  615

Query  744   GDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQI-YKTPPIKDF--GGF  800
             G+S EC NL  QYG  C  +   +  +  ++D      ++  K   + TP + +   G F
Sbjct  616   GNSLECRNLFQQYGPVCDNMLSVVNSVGQKEDMELLNFYSSTKPAGFNTPVLSNVSTGEF  675

Query  801   NFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAA--RDLICAQKFNGL  858
             N S  L  PS P +RSFIEDLLF  V          Y +C        +DL+CA+++NGL
Sbjct  676   NISLFLTTPSSPRRRSFIEDLLFTSVESVGLPTDDAYKNCTAGPLGFLKDLVCAREYNGL  735

Query  859   TVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYE  918
              VLPP++T EM   YTS+L+A     G T     A  IPFA Q+  R N +G+TQ++L +
Sbjct  736   LVLPPIITAEMQTLYTSSLVASMAFGGITA----AGAIPFATQLQARINHLGITQSLLLK  791

Query  919   NQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLN  978
             NQ+ IA  FN AIG +Q+   ST+ AL ++QDVVN+ +  L   +  L+ NFGAISSV+ 
Sbjct  792   NQEKIAASFNKAIGHMQEGFRSTSLALQQIQDVVNKQSAILTETMASLNKNFGAISSVIQ  851

Query  979   DILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSK  1038
             +I  +LD ++A  Q+DRLITGRL SL    + +      +     LA  K++ECV  QS 
Sbjct  852   EIYLQLDAIQANAQVDRLITGRLSSLSVLASAKQAEYIRVSQQRELATQKINECVKSQST  911

Query  1039  RVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICH-----DGKAHFP--R  1091
             R  FCG G H+++ PQ+AP+G+VF+H TY P    N T     C         A  P   
Sbjct  912   RYSFCGNGRHVLTIPQNAPNGIVFIHFTYTPESFVNVTAIVGFCVKPNNASQYAIVPVNG  971

Query  1092  EGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP-LQPELDSFKE  1150
              G+F+     +++T R+ Y P+ IT  +     +C      VN TV    ++ +   F +
Sbjct  972   RGIFIQVNDSYYITARDMYMPRHITAGDIVTLTSCQANYVSVNKTVITTFVENDDFDFDD  1031

Query  1151  ELDKYF--KNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQ  1208
             EL K++    +  PD D  + +     V+NI  +ID++ EV K LN+SLIDL+ L   + 
Sbjct  1032  ELSKWWIETKYELPDFDQFNYT---IPVLNITYDIDKIEEVIKGLNDSLIDLETLSILKT  1088

Query  1209  YIKWPWYIWLGFIAGLIAIVMVTIMLCCMT  1238
             YIKWPWY+WL      I  +++   +  MT
Sbjct  1089  YIKWPWYVWLAIAFATIIFILILGWVFFMT  1118


>sp|P11223|SPIKE_IBVB Spike glycoprotein OS=Avian infectious bronchitis 
virus (strain Beaudette) OX=11122 GN=S PE=1 SV=1
Length=1162

 Score = 687 bits (1772),  Expect = 0.0, Method: Composition-based stats.
 Identities = 253/989 (26%), Positives = 394/989 (40%), Gaps = 104/989 (11%)

Query  277   LKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQ-TSNFRVQPTESIVRFPNITNL  335
             L Y  NGT  D + C   P     C   +     G Y  T++  V+    + R  ++   
Sbjct  207   LAYFVNGTAQDVILCDGSPRGLLACQYNTGNFSDGFYPFTNSSLVKQKFIVYRENSVNTT  266

Query  336   CPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNV  395
             C                               L+N    +            N   +   
Sbjct  267   C------------------------------TLHNFIFHNETGANPNPSGVQNIQTYQTK  296

Query  396   YADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRL  455
              A S                  ++ + YK  +   G         L++   G   +   L
Sbjct  297   TAQSGYYNF---------NFSFLSSFVYKESNFMYGSYHPSCKFRLETINNGL--WFNSL  345

Query  456   FRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQP--TNGVGYQPYRVVVL  513
                    P +      +++  +T C              Y  +       G   Y     
Sbjct  346   SVSIAYGPLQGGCKQSVFKGRATCCYAYSYGGPSLCKGVYSGELDHNFECGLLVYVTKSG  405

Query  514   SFELLHAPATVCGPKKS-TNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQF------G  566
                +  A       + +  N+  N CV++N  G TG G +T      + +          
Sbjct  406   GSRIQTATEPPVITQNNYNNITLNTCVDYNIYGRTGQGFITNVTDSAVSYNYLADAGLAI  465

Query  567   RDIADTTDAV--RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAI  624
              D + + D    +    L    + PC       +  G      V +L             
Sbjct  466   LDTSGSIDIFVVQGEYGLNYYKVNPCEDVNQQFVVSGGK---LVGIL--------TSRNE  514

Query  625   HADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRA  684
                QL          +   + R           N   C        C             
Sbjct  515   TGSQLLENQFYIKITNGTRRFRR------SITENVANCPYVSYGKFCIKPD---------  559

Query  685   RSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICG  744
                 S + I           +     ++ IP +F ++VT E +   M K  ++C  Y+CG
Sbjct  560   ---GSIATIVPKQLEQFVAPLFNVTENVLIPNSFNLTVTDEYIQTRMDKVQINCLQYVCG  616

Query  745   DSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQI-YKTPPIKDF--GGFN  801
              S +C  L  QYG  C  +   +  +  ++D      ++  K   + TP + +   G FN
Sbjct  617   SSLDCRKLFQQYGPVCDNILSVVNSVGQKEDMELLNFYSSTKPAGFNTPVLSNVSTGEFN  676

Query  802   FSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAA--RDLICAQKFNGLT  859
              S +L +PS   KRS IEDLLF  V          Y +C        +DL CA+++NGL 
Sbjct  677   ISLLLTNPSSRRKRSLIEDLLFTSVESVGLPTNDAYKNCTAGPLGFFKDLACAREYNGLL  736

Query  860   VLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYEN  919
             VLPP++T EM A YTS+L+A     G T     A  IPFA Q+  R N +G+TQ++L +N
Sbjct  737   VLPPIITAEMQALYTSSLVASMAFGGITA----AGAIPFATQLQARINHLGITQSLLLKN  792

Query  920   QKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLND  979
             Q+ IA  FN AIG +Q+   ST+ AL ++QDVV++ +  L   +  L+ NFGAISSV+ +
Sbjct  793   QEKIAASFNKAIGHMQEGFRSTSLALQQIQDVVSKQSAILTETMASLNKNFGAISSVIQE  852

Query  980   ILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKR  1039
             I  + D ++A  Q+DRLITGRL SL    + +      +     LA  K++ECV  QS R
Sbjct  853   IYQQFDAIQANAQVDRLITGRLSSLSVLASAKQAEYIRVSQQRELATQKINECVKSQSIR  912

Query  1040  VDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICH-----DGKAHFPR--E  1092
               FCG G H+++ PQ+AP+G+VF+H +Y P    N T     C         A  P    
Sbjct  913   YSFCGNGRHVLTIPQNAPNGIVFIHFSYTPDSFVNVTAIVGFCVKPANASQYAIVPANGR  972

Query  1093  GVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP-LQPELDSFKEE  1151
             G+F+     +++T R+ Y P+ IT  +     +C      VN TV    +  +   F +E
Sbjct  973   GIFIQVNGSYYITARDMYMPRAITAGDVVTLTSCQANYVSVNKTVITTFVDNDDFDFNDE  1032

Query  1152  LDKYFKN--HTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQY  1209
             L K++ +  H  PD D  + +     +++I  EIDR+  V + LN+SLIDL++L   + Y
Sbjct  1033  LSKWWNDTKHELPDFDKFNYT---VPILDIDSEIDRIQGVIQGLNDSLIDLEKLSILKTY  1089

Query  1210  IKWPWYIWLGFIAGLIAIVMVTIMLCCMT  1238
             IKWPWY+WL      I  +++   +  MT
Sbjct  1090  IKWPWYVWLAIAFATIIFILILGWVFFMT  1118


>sp|P17662|SPIKE_IBVD3 Spike glycoprotein (Fragment) OS=Avian 
infectious bronchitis virus (strain D3896) OX=11125 GN=S PE=3 
SV=2
Length=550

 Score = 52.9 bits (125),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 50/340 (15%), Positives = 89/340 (26%), Gaps = 55/340 (16%)

Query  277  LKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQ-TSNFRVQPTESIVRFPNITNL  335
            L Y  NGT  D + C   P     C   +     G Y  T++  V+    + R  ++   
Sbjct  208  LAYFVNGTAQDVILCDGSPTGLLACQYNTGNFSDGFYPFTNSSLVKEKFIVYRESSVNTT  267

Query  336  CPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNV  395
                             +    +SN   +           T + Y  S  +     F   
Sbjct  268  LELT------------NFTFSNVSNANPNTG------GVHTIQLYQTSTAQSGHYNF---  306

Query  396  YADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRL  455
                                  ++ + YK  D   G         L++   G   +   L
Sbjct  307  ------------------NFSFLSSFTYKESDYMYGSYHPSCKFRLETINNGL--WFNSL  346

Query  456  FRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSF  515
                   P +      ++Q  +T C              Y  + T          V  + 
Sbjct  347  SVSLGYGPIQGGCKQSVFQNRATCCYAYSYNGPPLCKGVYRGELTKSFECGLLVFVTKTD  406

Query  516  ----ELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQF------  565
                +  + P T+       N+  ++CV +N  G  G G +T      + +         
Sbjct  407  GSRIQTRNEPFTLT-QHNYNNITLDRCVEYNIYGRVGQGFITNVTNYAINYNYLADGGMA  465

Query  566  GRDIADTTDAV--RDPQTLEILDITPCSFGGVSVITPGTN  603
              D +   D    +    L    + PC       +  G  
Sbjct  466  ILDTSGAIDIFVVQGEYGLNYYKVNPCEDVNQQFVVSGGK  505


>sp|P30207|SPIKE_IBVU2 Spike glycoprotein (Fragment) OS=Avian 
infectious bronchitis virus (strain UK/142/86) OX=31627 GN=S 
PE=3 SV=1
Length=520

 Score = 52.5 bits (124),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 48/339 (14%), Positives = 86/339 (25%), Gaps = 53/339 (16%)

Query  277  LKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLC  336
            L Y  NGT  D + C   P     C   +     G Y  +N                   
Sbjct  190  LAYFVNGTAQDVILCDGSPTGLLACQYNTGNFSDGFYPFTN-------------------  230

Query  337  PFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVY  396
                        S     +      V   S +  +   + F    VS    N      + 
Sbjct  231  ------------SSLVKEKFI----VYRESSVNTTLELTNFTFSNVSNATPNTGGVQTIQ  274

Query  397  ADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLF  456
                +        +       ++ + YK  D   G         L++   G   +   L 
Sbjct  275  LYQTITAQSGYYNL---NFSFLSSFIYKASDYMYGSYHPRCKFRLETINNGL--WFNSLS  329

Query  457  RKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSF-  515
                  P +      +++  +T C              Y  + T          V  +  
Sbjct  330  VSLGYGPIQGGCKQSVFENRATCCYAYSYNGPSLCKGVYRGELTKSFECGLLVFVTKTDG  389

Query  516  ---ELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQF------G  566
               ++ + P T+       N+  ++CV +N  G  G G +T      + +          
Sbjct  390  SRIQIRNEPLTLT-QHNYNNITLDRCVEYNIYGRVGQGFITNVTNYAINYNYLADGGMAI  448

Query  567  RDIADTTDAV--RDPQTLEILDITPCSFGGVSVITPGTN  603
             D +   D    +    L    + PC       +  G  
Sbjct  449  LDTSGAIDIFVVQGEYGLNYYKVNPCEDVNQQFVVSGGK  487


>sp|P30208|SPIKE_IBVU3 Spike glycoprotein (Fragment) OS=Avian 
infectious bronchitis virus (strain UK/167/84) OX=31628 GN=S 
PE=3 SV=1
Length=520

 Score = 52.1 bits (123),  Expect = 3e-05, Method: Composition-based stats.
 Identities = 48/340 (14%), Positives = 90/340 (26%), Gaps = 55/340 (16%)

Query  277  LKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQ-TSNFRVQPTESIVRFPNITNL  335
            L Y  NGT  D + C   P     C   +     G Y  T++  V+    + R       
Sbjct  190  LAYFVNGTAQDVILCDGSPTGLLACQYNTGNFSDGFYPFTNSSLVKEKFIVYR-------  242

Query  336  CPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNV  395
                     +   +         SN V++ +                + +   +L F+  
Sbjct  243  --------ESSVNTTLELTNFTFSN-VSNATPNTGGVQTIQLYQTKTAQSGYYNLNFS--  291

Query  396  YADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRL  455
                                  ++ ++YK  D   G         L++   G   +   L
Sbjct  292  ---------------------FLSSFSYKASDYMYGSYHPSCKFRLETINNGF--WFNPL  328

Query  456  FRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSF  515
                   P +      ++   +T C              Y  + T          V  + 
Sbjct  329  SVSLGYGPIQGGCKQSVFANRATCCYAYSYNGPSLCKGVYRGELTKSFECGLLVFVTKTD  388

Query  516  ----ELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQF------  565
                +  + P T+       N+  ++CV +N  G  G G +T      + +         
Sbjct  389  GSRIQTRNEPFTLT-QHNYNNITLDRCVEYNIYGRVGQGFITNVTNYAINYNYLADGGMA  447

Query  566  GRDIADTTDAV--RDPQTLEILDITPCSFGGVSVITPGTN  603
              D +   D    +    L    + PC       +  G  
Sbjct  448  ILDTSGAIDIFVVQGEYGLNYYKVNPCEDVNQQFVVSGGK  487


>sp|P30206|SPIKE_IBVU1 Spike glycoprotein (Fragment) OS=Avian 
infectious bronchitis virus (strain UK/123/82) OX=31626 GN=S 
PE=3 SV=1
Length=520

 Score = 52.1 bits (123),  Expect = 3e-05, Method: Composition-based stats.
 Identities = 48/341 (14%), Positives = 87/341 (26%), Gaps = 57/341 (17%)

Query  277  LKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQ-TSNFRVQPTESIVRFPNITNL  335
            L Y  NGT  D + C   P     C   +     G Y  T++  V+    + R  ++   
Sbjct  190  LAYFVNGTAQDVILCDGSPTGLLACQYNTGNFSDGFYPFTNSSLVKEKFIVYRESSVNTT  249

Query  336  CPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSAS----FSTFKCYGVSPTKLNDLC  391
                                         +S + N+        T + Y  S  +     
Sbjct  250  LDVT----------------------NFTFSNVSNATPNTGGVHTIQLYQTSTAQSGYYN  287

Query  392  FTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNY  451
            F   +  SF+ +  +                ++L     G  + +N  ++    G     
Sbjct  288  FNFSFLSSFIYKESDYMY-----GSYHPSCKFRLETINNG--LXFNPLSVSLGYGPIQGG  340

Query  452  LYRLFRKSNLKPFERDISTEIYQAGSTP-CNGVEGFNCYFPLQSYGFQPTNGVGYQPYRV  510
              +   ++      R      Y     P C GV         +               + 
Sbjct  341  CKQSVFEN------RATCCYAYSYNGPPLCKGVYRGELTKSFECGLLVFVTKTDGSRIQT  394

Query  511  VVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQF-----  565
                F L              N+  ++CV +N  G  G G +T      + +        
Sbjct  395  RNEPFTLTQ--------HNYNNITLDRCVEYNIYGRVGQGFITNVTNYAINYNYLADGGM  446

Query  566  -GRDIADTTDAV--RDPQTLEILDITPCSFGGVSVITPGTN  603
               D +   D    +    L    + PC       +  G  
Sbjct  447  AILDTSGAIDIFVVQGEYGLNYYKVNPCEDVNQQFVVSGGK  487


>sp|B0R6I4|BAST_HALS3 Transducer protein BasT OS=Halobacterium 
salinarum (strain ATCC 29341 / DSM 671 / R1) OX=478009 GN=basT 
PE=1 SV=1
Length=805

 Score = 50.2 bits (118),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 56/123 (46%), Gaps = 18/123 (15%)

Query  911   VTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNF  970
             + ++V  E  + IA  FN  +G ++ +L+   S    + D V+  +  ++T   ++ S  
Sbjct  462   LDEDVDSEPMQDIAEAFNDMMGDVEATLAQVRS----IADAVDAASTDVSTSAAEIRSAS  517

Query  971   GAISSVLNDILSRLDKVEAEVQIDRL--ITGRLQSLQTYVTQQLIRAAEIRASANLAATK  1028
               +S  + DI       +A+ Q DRL  +   + SL   V        EI ASA+  A  
Sbjct  518   DQVSESVQDI-----SADADQQRDRLGTVGDEVTSLSATV-------EEIAASADDVAET  565

Query  1029  MSE  1031
             +++
Sbjct  566   VNQ  568


>sp|B8F3P6|MUKF_GLAP5 Chromosome partition protein MukF OS=Glaesserella 
parasuis serovar 5 (strain SH0165) OX=557723 GN=mukF 
PE=3 SV=1
Length=443

 Score = 41.7 bits (96),  Expect = 0.043, Method: Composition-based stats.
 Identities = 29/113 (26%), Positives = 57/113 (50%), Gaps = 17/113 (15%)

Query  897  PFAMQMAYRFNGIGVTQNVLYENQK--------LIANQFNSAIGKIQDSLSSTASALGKL  948
            P    +A  F+ I ++Q ++ ENQ+        L++  ++ AI   Q  L  T+  L +L
Sbjct  160  PLKFSVAEIFDSIDLSQRMMDENQQQIRERIAMLLSQNWHEAIATCQQLLDETSGNLREL  219

Query  949  QDVVNQNAQALNTLVKQLSSNFGAISSVLN-DILSRLDKVEAEVQ--IDRLIT  998
            QDV+N +   L + + ++       S ++  D L  +D++   +Q  +DR+I+
Sbjct  220  QDVLNASGDKLQSQLLRIQ------SCLIGRDDLDFVDQLIVNLQNKLDRIIS  266


>sp|A8F461|FLGI_PSELT Flagellar P-ring protein OS=Pseudothermotoga 
lettingae (strain ATCC BAA-301 / DSM 14385 / NBRC 107922 
/ TMO) OX=416591 GN=flgI PE=3 SV=1
Length=331

 Score = 40.5 bits (93),  Expect = 0.075, Method: Composition-based stats.
 Identities = 50/267 (19%), Positives = 89/267 (33%), Gaps = 21/267 (8%)

Query  545  GLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEIL---DITPCSFGG----VSV  597
            GL GTG   + N   L       +++  +D+++   +  ++   DI P    G    VSV
Sbjct  44   GLNGTGDSGQVNSTLLANMAKAFNVSIDSDSLKTKNSALVMVFADIPPFYKEGMRLDVSV  103

Query  598  ITPGTNTSNQVAVLYQD--VNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEH  655
             + G   S +   L Q           A+    ++         +N+       ++G   
Sbjct  104  ASIGDAKSLEGGFLVQTPLYGADGNVYAVAQGNVSVGGFDVKVSANLQNKYR--IVGYIP  161

Query  656  VNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIP  715
                 E +IP       S       P    S      I  T       +V  S+  I +P
Sbjct  162  NGAIVEKEIPFEFVQSNSVTILLKKPDFTTSARVAQAINTTFERKIAKAVDASSIKIEVP  221

Query  716  TNF-----TISVTTEILPVSMT---KTSVD--CTMYICGDSTECSNLLLQYGSFCTQLNR  765
            + F     T     E + VS+    +  V+      + G + +  +  L YG F   +  
Sbjct  222  SAFEDDIVTFLSLVEEVEVSVDQPARVVVNEKTGTVVFGGNVKILDFTLSYGVFNITVKN  281

Query  766  ALTGIAVEQDKNTQEVFAQVKQIYKTP  792
                 + E D     + + +K +  TP
Sbjct  282  GKVESSEEVDATVSSLVSALKNLGATP  308


>sp|P30141|MRP4_STRPY Fibrinogen- and Ig-binding protein OS=Streptococcus 
pyogenes OX=1314 GN=mrp4 PE=3 SV=1
Length=388

 Score = 40.1 bits (92),  Expect = 0.12, Method: Composition-based stats.
 Identities = 33/144 (23%), Positives = 54/144 (38%), Gaps = 29/144 (20%)

Query  899   AMQMAYR-----FNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVN  953
             A++   R      N +  T   + E  + IA   + A  K Q +L +  +   ++ D+ N
Sbjct  68    ALEKQARDLGDTINHMSQT---ISEQSRKIAALKSEAELKNQQALEALNNKNKQISDLTN  124

Query  954   QNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI  1013
             +NA        QL     AI   +  I +   ++ A+ Q           L    +Q   
Sbjct  125   ENA--------QLKE---AIEGYVQTIQNASREIAAKQQ----------ELAAAKSQLEA  163

Query  1014  RAAEIRASANLAATKMSECVLGQS  1037
             + AEI A     A+K  E    QS
Sbjct  164   KNAEIEALKQQDASKTEEIAKLQS  187


>sp|Q3BUW9|CCME1_XANC5 Cytochrome c-type biogenesis protein CcmE 
1 OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) 
OX=316273 GN=ccmE1 PE=3 SV=1
Length=156

 Score = 38.2 bits (87),  Expect = 0.15, Method: Composition-based stats.
 Identities = 21/89 (24%), Positives = 37/89 (42%), Gaps = 9/89 (10%)

Query  862  PPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAM---QMAYRFNGIGVTQNVLYE  918
            P  ++    A Y    L G + +G    AG +L++ F +     A +    G+  ++  +
Sbjct  40   PSQVSAGEAAGYQQFRLGGMVKAGSIQRAGDSLKVSFTVIDKNAATQVEYTGILPDLFRD  99

Query  919  NQKLIANQFNSAIGKIQDSLSSTASALGK  947
            NQ +IAN      G++Q         L K
Sbjct  100  NQSVIAN------GRMQGGRFVANEVLAK  122


>sp|Q6LUI8|PNP_PHOPR Polyribonucleotide nucleotidyltransferase 
OS=Photobacterium profundum (strain SS9) OX=298386 GN=pnp PE=3 
SV=1
Length=707

 Score = 38.2 bits (87),  Expect = 0.66, Method: Composition-based stats.
 Identities = 28/158 (18%), Positives = 65/158 (41%), Gaps = 29/158 (18%)

Query  900   MQMAYRFNGIGVTQNVLY--ENQ-----KLIANQFNSAIGKIQDSLSSTASALG------  946
               +       G+T+ ++    NQ     K I +  + AIG  +D +S  A  +       
Sbjct  502   TALQMDIKIEGITKEIMQIALNQAKGARKHILSVMDDAIGTHRDDISQFAPRIHTMKINS  561

Query  947   -KLQDVVNQNAQALNTLVKQLSSNF-----GAIS------SVLNDILSRLDKVEAEVQID  994
              K++DV+ +    +  L ++  +       G I       +   + + R++++ A+V++ 
Sbjct  562   DKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAATEGAAAKEAIRRIEEITADVEVG  621

Query  995   RLITG---RLQSLQTYVTQQLIRAAEIRASANLAATKM  1029
             R+ TG   R+     +V+    +   +  S  +A  ++
Sbjct  622   RIYTGKVMRIVDFGAFVSVIGAKEGLVHIS-QIAQERV  658


>sp|Q9X0M7|MCP2_THEMA Methyl-accepting chemotaxis protein 2 OS=Thermotoga 
maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 
/ NBRC 100826 / MSB8) OX=243274 GN=mcp2 PE=1 SV=1
Length=530

 Score = 37.8 bits (86),  Expect = 0.77, Method: Composition-based stats.
 Identities = 15/76 (20%), Positives = 37/76 (49%), Gaps = 3/76 (4%)

Query  928  NSAIGKIQDSLSSTASALGKLQDVVN---QNAQALNTLVKQLSSNFGAISSVLNDILSRL  984
            N  +  I  ++    +A+ ++   +    +NA+ +   VK++++    IS+   ++ SR+
Sbjct  452  NEMLQNIAAAIEEQTAAVDEITTAMTENAKNAEEITNSVKEVNARLQEISASTEEVTSRV  511

Query  985  DKVEAEVQIDRLITGR  1000
              +   VQ+ + I  R
Sbjct  512  QTIRENVQMLKEIVAR  527


>sp|Q08581|SLK19_YEAST Kinetochore protein SLK19 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SLK19 
PE=1 SV=1
Length=821

 Score = 37.8 bits (86),  Expect = 0.92, Method: Composition-based stats.
 Identities = 31/142 (22%), Positives = 64/142 (45%), Gaps = 16/142 (11%)

Query  905   RFNGIGVTQNVLYENQKLIANQFNSAI---GKIQDSLSSTASALGKLQDVVNQNAQALNT  961
             R   +     VL  NQK++  +F+++I     I+    +T + L + + ++N     L  
Sbjct  379   RIKELNTEIKVLNSNQKILQEKFDASITEVNHIKGEHENTVNTLQQNEKILNDKNVELEN  438

Query  962   LVKQLSSNFGAIS---SVLNDILSRL----DKVEA-----EVQIDRLITGRLQSLQTY-V  1008
             +  +L  N   +S   + LND+ SR+    DK+E+     + + + L   +L   +T  +
Sbjct  439   MKAELKGNNDKLSEYETTLNDLNSRIVQLNDKIESTDIVLKSKENELDNLKLSLKETLSI  498

Query  1009  TQQLIRAAEIRASANLAATKMS  1030
             ++    +  I     L +TK +
Sbjct  499   SKDFNDSDLIGQINELISTKNN  520


>sp|Q8PLW2|CCME1_XANAC Cytochrome c-type biogenesis protein CcmE 
1 OS=Xanthomonas axonopodis pv. citri (strain 306) OX=190486 
GN=ccmE1 PE=3 SV=1
Length=156

 Score = 35.9 bits (81),  Expect = 1.1, Method: Composition-based stats.
 Identities = 21/89 (24%), Positives = 36/89 (40%), Gaps = 9/89 (10%)

Query  862  PPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAM---QMAYRFNGIGVTQNVLYE  918
            P  +     A Y    L G + +G    AG +L++ F +     A +    G+  ++  +
Sbjct  40   PSQVRAGEAAGYQQFRLGGMVKAGSIQRAGDSLKVSFIVIDKNAATQVEYTGILPDLFRD  99

Query  919  NQKLIANQFNSAIGKIQDSLSSTASALGK  947
            NQ +IAN      G++Q         L K
Sbjct  100  NQSVIAN------GRMQGGRFVANEVLAK  122


>sp|Q8PA33|CCME1_XANCP Cytochrome c-type biogenesis protein CcmE 
1 OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 
/ DSM 3586 / NCPPB 528 / LMG 568 / P 25) OX=190485 GN=ccmE1 
PE=3 SV=1
Length=156

 Score = 35.5 bits (80),  Expect = 1.4, Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 9/89 (10%)

Query  862  PPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAM---QMAYRFNGIGVTQNVLYE  918
            P  +     A Y    L G + +G    A  +L + F +     A +    G+  ++  +
Sbjct  40   PSQVDAGAAAGYQQFRLGGMVKAGSIQRATDSLTVTFKVIDKHAATQVEYTGILPDLFRD  99

Query  919  NQKLIANQFNSAIGKIQDSLSSTASALGK  947
            NQ +IAN      G++Q         L K
Sbjct  100  NQSVIAN------GRMQAGRFVANEVLAK  122


>sp|Q4UTK2|CCME1_XANC8 Cytochrome c-type biogenesis protein CcmE 
1 OS=Xanthomonas campestris pv. campestris (strain 8004) 
OX=314565 GN=ccmE1 PE=3 SV=1
Length=156

 Score = 35.5 bits (80),  Expect = 1.4, Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 9/89 (10%)

Query  862  PPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAM---QMAYRFNGIGVTQNVLYE  918
            P  +     A Y    L G + +G    A  +L + F +     A +    G+  ++  +
Sbjct  40   PSQVDAGAAAGYQQFRLGGMVKAGSIQRATDSLTVTFKVIDKHAATQVEYTGILPDLFRD  99

Query  919  NQKLIANQFNSAIGKIQDSLSSTASALGK  947
            NQ +IAN      G++Q         L K
Sbjct  100  NQSVIAN------GRMQAGRFVANEVLAK  122


>sp|P0DM86|CRFC_ECOLX Clamp-binding protein CrfC OS=Escherichia 
coli OX=562 GN=crfC PE=3 SV=1
Length=742

 Score = 36.7 bits (83),  Expect = 1.8, Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 14/100 (14%)

Query  934   IQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ-  992
             I+ +L+S    L + QD +N    AL          F   S  L+++ +R + +    Q 
Sbjct  480   IELALTSANHFLRQQQDALNAQLAAL----------FQDDSEPLSEMRTRCETLLQTAQN  529

Query  993   -IDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSE  1031
              I R  T R   L++ + + L     IR        ++SE
Sbjct  530   TISRDFTLRFAELESTLCRVLTDV--IRPIEQQVKMELSE  567


>sp|Q008X4|SPIKE_WBV24 Spike glycoprotein OS=White bream virus 
(isolate Blicca bjoerkna L./Germany/DF24/00) OX=766180 GN=S 
PE=3 SV=1
Length=1220

 Score = 36.7 bits (83),  Expect = 1.9, Method: Composition-based stats.
 Identities = 55/384 (14%), Positives = 113/384 (29%), Gaps = 86/384 (22%)

Query  638   TGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTM  697
              GS  F    G  +       ++    P    +    +     P         +    T 
Sbjct  644   NGSYQFDQFVGGALNL--RTLTFTMRKPTQLYVLDPIEGTYIIPDYQTKFPLLTSGTQTY  701

Query  698   SLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYG  757
                 + +V  +     +  +F+I        +++     +C  +IC     C      Y 
Sbjct  702   YYDPDQTVTNTTEVSKVTIDFSIRTM-----ITLDPLVFNCEEFICDKDPTCRTQFSSYC  756

Query  758   SFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSF  817
                  +  AL     + +++  +  + ++ +  T             +    +    R  
Sbjct  757   QTTQPILAALKDAFEKYNRSIADYTSTIRALTNTT----------QDLFASATPVRYRRG  806

Query  818   IEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSAL  877
             +E            G+              DL                            
Sbjct  807   VE---------VPLGYGHDLEQ---PSWVYDL----------------------------  826

Query  878   LAGTITSGWTFGAGAALQIPFAMQ-MAYRFNGI--GVTQNVLYENQK--LIANQFNSAIG  932
               GT    W   A A  ++   +  +      I  GV Q++   N K   I N  ++ + 
Sbjct  827   -GGTAIVPWIGTAVAVGKLANRVASIEATLYQITQGVKQSIQSTNDKFDKITNILHTHLR  885

Query  933   KIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA---  989
              + + L  T               + LN   KQ+   F  I++V  ++ + +D+++    
Sbjct  886   PVTEGLVRTN--------------EQLNAFSKQVRDQFTMINTVTTELSAYVDQLQQVFT  931

Query  990   -----EVQIDRLITGRLQSLQTYV  1008
                  + QI ++I+ +L SLQ YV
Sbjct  932   VGAFYQNQILQVIS-QLNSLQVYV  954


>sp|O54990|PROM1_MOUSE Prominin-1 OS=Mus musculus OX=10090 GN=Prom1 
PE=1 SV=1
Length=867

 Score = 36.7 bits (83),  Expect = 2.0, Method: Composition-based stats.
 Identities = 25/120 (21%), Positives = 50/120 (42%), Gaps = 11/120 (9%)

Query  1129  VIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVD--LGDISGINASVVNIQKEI---  1183
              +  V+ T  + L     +  +E+    +N T   +      +  I++++ ++ + I   
Sbjct  345   TVTEVDKTDLESLVKRGYTTIDEIPNTIQNQTVDVIKDVKNTLDSISSNIKDMSQSIPIE  404

Query  1184  DRLNEVAKNLNES--LIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCC  1241
             D L +V+  LN S   ++ QEL K E+Y     Y WLG +     + ++         C 
Sbjct  405   DMLLQVSHYLNNSNRYLN-QELPKLEEYDS---YWWLGGLIVCFLLTLIVTFFFLGLLCG  460


>sp|A5N4M6|SYC_CLOK5 Cysteine--tRNA ligase OS=Clostridium kluyveri 
(strain ATCC 8527 / DSM 555 / NCIMB 10680) OX=431943 GN=cysS 
PE=3 SV=1
Length=465

 Score = 35.5 bits (80),  Expect = 3.5, Method: Composition-based stats.
 Identities = 18/76 (24%), Positives = 31/76 (41%), Gaps = 5/76 (7%)

Query  1130  IGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEI-DRLNE  1188
                +NN           + +E LDKY  +     + L  +SG   + +N   E+ D    
Sbjct  257   FVNINNQKMSKSLNNFFTTREILDKYEPDV----IRLFMLSGHYRTPINFSIELLDSTKS  312

Query  1189  VAKNLNESLIDLQELG  1204
                 +  S+I+L+EL 
Sbjct  313   ALDRICNSIINLEELS  328


>sp|B9DY88|SYC_CLOK1 Cysteine--tRNA ligase OS=Clostridium kluyveri 
(strain NBRC 12016) OX=583346 GN=cysS PE=3 SV=1
Length=465

 Score = 35.5 bits (80),  Expect = 3.5, Method: Composition-based stats.
 Identities = 18/76 (24%), Positives = 31/76 (41%), Gaps = 5/76 (7%)

Query  1130  IGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEI-DRLNE  1188
                +NN           + +E LDKY  +     + L  +SG   + +N   E+ D    
Sbjct  257   FVNINNQKMSKSLNNFFTTREILDKYEPDV----IRLFMLSGHYRTPINFSIELLDSTKS  312

Query  1189  VAKNLNESLIDLQELG  1204
                 +  S+I+L+EL 
Sbjct  313   ALDRICNSIINLEELS  328


>sp|Q09094|REC15_SCHPO Meiotic recombination protein rec15 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 
GN=rec15 PE=1 SV=1
Length=180

 Score = 34.4 bits (77),  Expect = 3.5, Method: Composition-based stats.
 Identities = 16/85 (19%), Positives = 41/85 (48%), Gaps = 4/85 (5%)

Query  909  IGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGK----LQDVVNQNAQALNTLVK  964
            + +    + ++QK  +NQ  S + ++          +G+    + +V  QN+Q +   + 
Sbjct  15   LAMQAEDMQQHQKSQSNQIASCLAEMNTKQEVVNQTIGQLGRSISEVQQQNSQLVLQSLN  74

Query  965  QLSSNFGAISSVLNDILSRLDKVEA  989
            Q++ +   ++  + D  SR++K+E 
Sbjct  75   QINMSMQQVALGIQDYASRINKLEQ  99


>sp|P10865|FUS_NDVM Fusion glycoprotein F0 OS=Newcastle disease 
virus (strain Miyadera/51) OX=11185 GN=F PE=3 SV=1
Length=553

 Score = 35.5 bits (80),  Expect = 4.0, Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 37/98 (38%), Gaps = 13/98 (13%)

Query  869  MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFN  928
               ++  A++        T     A     +  +    N      N+L   + + A   N
Sbjct  113  RQRRFIGAIIGSVALGVATAAQITAA----SALIQANQN----AANILRLKESIAAT--N  162

Query  929  SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQL  966
             A+ ++ D LS  A A+GK+Q  VN      N   ++L
Sbjct  163  EAVHEVTDGLSQLAVAVGKMQQFVNDQ---FNNTTQEL  197


>sp|P35936|FUS_NDVD Fusion glycoprotein F0 OS=Newcastle disease 
virus (strain D26/76) OX=11180 GN=F PE=1 SV=1
Length=553

 Score = 35.1 bits (79),  Expect = 4.7, Method: Composition-based stats.
 Identities = 26/88 (30%), Positives = 37/88 (42%), Gaps = 10/88 (11%)

Query  880  GTITSGWTFGAGAALQIPFAMQ-MAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSL  938
            G I  G   G   A QI  A   +    N      N+L   + + A   N A+ ++ D L
Sbjct  119  GAIIGGVALGVATAAQITAASALIQANQN----AANILRLKESIAAT--NEAVHEVTDGL  172

Query  939  SSTASALGKLQDVVNQNAQALNTLVKQL  966
            S  A A+GK+Q  VN      N   ++L
Sbjct  173  SQLAVAVGKMQQFVNDQ---FNKTAQEL  197


>sp|Q9X1E2|MCP4_THEMA Methyl-accepting chemotaxis protein 4 OS=Thermotoga 
maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 
/ NBRC 100826 / MSB8) OX=243274 GN=mcp4 PE=1 SV=1
Length=566

 Score = 35.1 bits (79),  Expect = 5.2, Method: Composition-based stats.
 Identities = 27/143 (19%), Positives = 57/143 (40%), Gaps = 22/143 (15%)

Query  909   IGVTQNVLYENQ-KLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLS  967
             + V+ ++  +++  LIA + N  +G ++  +      + K QD V + ++ L  L +QL 
Sbjct  230   LSVSVDIKSKDEFGLIAQKLNETVGNLRKMVQE----IDKSQDEVERVSEELFALSQQLR  285

Query  968   SNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAAT  1027
                    S L +I    D +  EVQ          +    + +    + E+ A++   + 
Sbjct  286   -------SALEEIARASDTISKEVQ----------NASASIEEVTSGSEEVSANSQNISK  328

Query  1028  KMSECVLGQSKRVDFCGKGYHLM  1050
              + E         DF   G  ++
Sbjct  329   LIQEISENADNIADFARNGQRVL  351


>sp|F1QC17|EMI1A_DANRE EMILIN-1-A OS=Danio rerio OX=7955 GN=emilin1a 
PE=3 SV=1
Length=1014

 Score = 35.1 bits (79),  Expect = 5.2, Method: Composition-based stats.
 Identities = 17/109 (16%), Positives = 43/109 (39%), Gaps = 9/109 (8%)

Query  918   ENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVL  977
             +NQ  +  +    +  IQ  L+        + D +    + L   +++  +N   +++  
Sbjct  619   DNQNTVTRKLGKDLKSIQGELTGILQIFNSINDTL----KGLRNTIQKHGNNITDLNTSK  674

Query  978   NDILSRLDKVEAEV---QIDRLITGRLQSLQTYVTQQLIRAAEIRASAN  1023
               I   LD++  ++   ++D    G   S+ ++ +  +    E R S  
Sbjct  675   GKIYLELDQLYDDLNKHKVDS--KGHFDSISSFNSNLMTEMGECRLSRE  721


>sp|Q6GN42|CTL4_XENLA Choline transporter-like protein 4 OS=Xenopus 
laevis OX=8355 GN=slc44a4 PE=2 SV=1
Length=707

 Score = 35.1 bits (79),  Expect = 5.4, Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 6/125 (5%)

Query  1116  TTDNTFVSGNCD--VVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGIN  1173
             +  + ++   C   + +     TV      EL          F N   P  +L   S   
Sbjct  125   SPASVYIQEYCQPSINLTTTPLTVAQIAAKELCPVFLVPSTSFFNRCFPGSNLTFPSDFT  184

Query  1174  ASVVNIQKEIDRLNEVAKNLNESLIDLQELGK--YEQYIK-WPWYIWLGFIAGLIAIVMV  1230
              + +   +    ++E A  + +S  + Q +GK  +E + K WPW I    IA +++++ +
Sbjct  185   INGLTANQSRANISEAASQILDSF-NFQNVGKKIFEDFAKSWPWIITALVIAMVVSLLFL  243

Query  1231  TIMLC  1235
              ++  
Sbjct  244   ILLRF  248


>sp|P33612|FUS_NDVH3 Fusion glycoprotein F0 OS=Newcastle disease 
virus (strain Her/33) OX=11187 GN=F PE=3 SV=1
Length=553

 Score = 35.1 bits (79),  Expect = 5.4, Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 37/98 (38%), Gaps = 13/98 (13%)

Query  869  MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFN  928
               ++  A++        T     A     +  +    N      N+L   + + A   N
Sbjct  113  RQRRFIGAIIGSVALGVATAAQITAA----SALIQANQN----AANILRLKESIAAT--N  162

Query  929  SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQL  966
             A+ ++ D LS  A A+GK+Q  VN      N   ++L
Sbjct  163  EAVHEVTDGLSQIAVAVGKMQQFVNDQ---FNNTAQEL  197


>sp|P33614|FUS_NDVL Fusion glycoprotein F0 OS=Newcastle disease 
virus (strain Chicken/United States/LaSota/46) OX=11184 GN=F 
PE=3 SV=1
Length=553

 Score = 34.7 bits (78),  Expect = 5.9, Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 10/88 (11%)

Query  880  GTITSGWTFGAGAALQIPFAMQ-MAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSL  938
            G I  G   G     QI  A   +  + N      N+L   + + A   N A+ ++ D L
Sbjct  119  GAIIGGVALGVATPAQITAAAALIQAKQN----AANILRLKESIAAT--NEAVHEVTDGL  172

Query  939  SSTASALGKLQDVVNQNAQALNTLVKQL  966
            S  A A+GK+Q  VN      N   ++L
Sbjct  173  SQLAVAVGKMQQFVNDQ---FNKTAQEL  197


>sp|P33615|FUS_NDVQ Fusion glycoprotein F0 OS=Newcastle disease 
virus (strain Queensland/66) OX=11186 GN=F PE=3 SV=1
Length=553

 Score = 34.7 bits (78),  Expect = 6.3, Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 10/88 (11%)

Query  880  GTITSGWTFGAGAALQIPFAMQ-MAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSL  938
            G I  G   G   A QI  A   +    N      N+L   + + A   N A+ ++ + L
Sbjct  119  GAIIGGVALGVATAAQITAASALIQANQN----AANILLLKESIAAT--NEAVHEVTNGL  172

Query  939  SSTASALGKLQDVVNQNAQALNTLVKQL  966
            S  A A+GK+Q  VN      N   ++L
Sbjct  173  SQLAVAVGKMQQFVNDQ---FNKTAQEL  197


>sp|P14623|FUS_NDVI Fusion glycoprotein F0 OS=Newcastle disease 
virus (strain Italien/45) OX=11182 GN=F PE=2 SV=1
Length=553

 Score = 34.7 bits (78),  Expect = 6.5, Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 37/98 (38%), Gaps = 13/98 (13%)

Query  869  MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFN  928
               ++  A++        T     A     +  +    N      N+L   + + A   N
Sbjct  113  RQRRFIGAIIGSVALGVATPAQITAA----SALIQANQN----AANILRLKESIAAT--N  162

Query  929  SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQL  966
             A+ ++ D LS  A A+GK+Q  VN      N   +QL
Sbjct  163  EAVHEVTDGLSQLAVAVGKMQQFVNDQ---FNNTAQQL  197


>sp|P26628|FUS_NDVT Fusion glycoprotein F0 OS=Newcastle disease 
virus (strain Texas) OX=11188 GN=F PE=3 SV=1
Length=553

 Score = 34.4 bits (77),  Expect = 7.6, Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 37/98 (38%), Gaps = 13/98 (13%)

Query  869  MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFN  928
               ++  A++        T     A     +  +    N      N+L   + + A   N
Sbjct  113  RQRRFIGAIIGSVALGVATAAQITAA----SALIQANQN----AANILRLKESIAAT--N  162

Query  929  SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQL  966
             A+ ++ D LS  A A+GK+Q  VN      N   ++L
Sbjct  163  EAVHEVTDGLSQLAVAVGKMQQFVNDQ---FNNTAQEL  197



Lambda      K        H        a         alpha
   0.318    0.126    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0386    0.140     1.90     42.6     43.6 

Effective search space used: 151247772180


  Database: uniprot_sprot.fasta
    Posted date:  Feb 9, 2024  7:20 PM
  Number of letters in database: 206,533,160
  Number of sequences in database:  570,830



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40