PSIBLAST 2.11.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Stephen F. Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: uniprot_sprot.fasta 570,830 sequences; 206,533,160 total letters Results from round 1 Query= sp|P0DTC2|SPIKE_SARS2 Spike glycoprotein OS=Severe acute respiratory syndrome coronavirus 2 OX=2697049 GN=S PE=1 SV=1 Length=1273 Score E Sequences producing significant alignments: (Bits) Value sp|P0DTC2|SPIKE_SARS2 Spike glycoprotein OS=Severe acute respirat... 2637 0.0 sp|P59594|SPIKE_SARS Spike glycoprotein OS=Severe acute respirato... 2039 0.0 sp|Q3LZX1|SPIKE_BCHK3 Spike glycoprotein OS=Bat coronavirus HKU3 ... 2001 0.0 sp|Q3I5J5|SPIKE_BCRP3 Spike glycoprotein OS=Bat coronavirus Rp3/2... 1986 0.0 sp|Q0Q475|SPIKE_BC279 Spike glycoprotein OS=Bat coronavirus 279/2... 1974 0.0 sp|A3EXG6|SPIKE_BCHK9 Spike glycoprotein OS=Bat coronavirus HKU9 ... 614 0.0 sp|A3EXD0|SPIKE_BCHK5 Spike glycoprotein OS=Bat coronavirus HKU5 ... 600 0.0 sp|Q0Q4F2|SPIKE_BC133 Spike glycoprotein OS=Bat coronavirus 133/2... 571 5e-180 sp|K9N5Q8|SPIKE_MERS1 Spike glycoprotein OS=Middle East respirato... 554 1e-173 sp|P11225|SPIKE_CVMJH Spike glycoprotein OS=Murine coronavirus (s... 526 3e-164 sp|A3EX94|SPIKE_BCHK4 Spike glycoprotein OS=Bat coronavirus HKU4 ... 499 6e-153 sp|P25192|SPIKE_CVBLY Spike glycoprotein OS=Bovine coronavirus (s... 485 6e-148 sp|Q9QAQ8|SPIKE_CVBOK Spike glycoprotein OS=Bovine coronavirus (s... 485 6e-148 sp|Q91A26|SPIKE_CVBEN Spike glycoprotein OS=Bovine coronavirus (s... 484 1e-147 sp|Q8V436|SPIKE_CVBLU Spike glycoprotein OS=Bovine coronavirus (s... 484 1e-147 sp|Q9QAR5|SPIKE_CVBLS Spike glycoprotein OS=Bovine coronavirus (s... 484 2e-147 sp|P25194|SPIKE_CVBV Spike glycoprotein OS=Bovine coronavirus (st... 481 2e-146 sp|P25191|SPIKE_CVBL9 Spike glycoprotein OS=Bovine coronavirus (s... 479 2e-145 sp|P15777|SPIKE_CVBM Spike glycoprotein OS=Bovine coronavirus (st... 478 5e-145 sp|P25190|SPIKE_CVBF Spike glycoprotein OS=Bovine coronavirus (st... 477 5e-145 sp|P25193|SPIKE_CVBQ Spike glycoprotein OS=Bovine coronavirus (st... 474 1e-143 sp|Q0ZME7|SPIKE_CVHN5 Spike glycoprotein OS=Human coronavirus HKU... 467 3e-141 sp|Q14EB0|SPIKE_CVHN2 Spike glycoprotein OS=Human coronavirus HKU... 466 9e-141 sp|P36334|SPIKE_CVHOC Spike glycoprotein OS=Human coronavirus OC4... 464 2e-140 sp|P11224|SPIKE_CVMA5 Spike glycoprotein OS=Murine coronavirus (s... 459 9e-139 sp|Q8JSP8|SPIKE_CVPIA Spike glycoprotein OS=Porcine hemagglutinat... 459 2e-138 sp|Q8BB25|SPIKE_CVP67 Spike glycoprotein OS=Porcine hemagglutinat... 459 2e-138 sp|Q02385|SPIKE_CVMJC Spike glycoprotein OS=Murine coronavirus (s... 459 4e-138 sp|P22432|SPIKE_CVM4 Spike glycoprotein OS=Murine coronavirus (st... 459 5e-138 sp|Q9IKD1|SPIKE_CVRSD Spike glycoprotein OS=Rat coronavirus (stra... 455 6e-137 sp|Q5MQD0|SPIKE_CVHN1 Spike glycoprotein OS=Human coronavirus HKU... 452 5e-136 sp|P15423|SPIKE_CVH22 Spike glycoprotein OS=Human coronavirus 229... 364 3e-105 sp|P12650|SPIKE_IBVK Spike glycoprotein OS=Avian infectious bronc... 352 2e-101 sp|P12651|SPIKE_IBVM Spike glycoprotein OS=Avian infectious bronc... 349 3e-100 sp|P05135|SPIKE_IBV6 Spike glycoprotein OS=Avian infectious bronc... 347 2e-99 sp|Q6Q1S2|SPIKE_CVHNL Spike glycoprotein OS=Human coronavirus NL6... 349 4e-99 sp|P12722|SPIKE_IBVD2 Spike glycoprotein OS=Avian infectious bron... 345 5e-99 sp|P27655|SPIKE_CVPR8 Spike glycoprotein OS=Porcine respiratory c... 344 5e-98 sp|P11223|SPIKE_IBVB Spike glycoprotein OS=Avian infectious bronc... 341 2e-97 sp|P24413|SPIKE_CVPRM Spike glycoprotein OS=Porcine respiratory c... 338 4e-96 sp|Q65984|SPIKE_CVCAK Spike glycoprotein OS=Canine coronavirus (s... 339 2e-95 sp|Q0Q466|SPIKE_BC512 Spike glycoprotein OS=Bat coronavirus 512/2... 337 4e-95 sp|P10033|SPIKE_FIPV Spike glycoprotein OS=Feline coronavirus (st... 337 9e-95 sp|P07946|SPIKE_CVPPU Spike glycoprotein OS=Porcine transmissible... 337 1e-94 sp|Q7T6T3|SPIKE_CVCBG Spike glycoprotein OS=Canine coronavirus (s... 337 1e-94 sp|P33470|SPIKE_CVPMI Spike glycoprotein OS=Porcine transmissible... 335 5e-94 sp|Q01977|SPIKE_CVPRT Spike glycoprotein OS=Porcine transmissible... 334 1e-93 sp|P18450|SPIKE_CVPFS Spike glycoprotein OS=Porcine transmissible... 332 5e-93 sp|P36300|SPIKE_CVCAI Spike glycoprotein OS=Canine coronavirus (s... 328 1e-91 sp|Q91AV1|SPIKE_PEDV7 Spike glycoprotein OS=Porcine epidemic diar... 314 4e-87 sp|Q6GH02|TELL_STAAR TelA-like protein SAR1418 OS=Staphylococcus ... 37.4 0.93 sp|Q5HG14|TELL_STAAC TelA-like protein SACOL1441 OS=Staphylococcu... 37.4 0.93 sp|Q2FYM7|TELL_STAA8 TelA-like protein SAOUHSC_01408 OS=Staphyloc... 37.4 0.93 sp|Q2FH32|TELL_STAA3 TelA-like protein SAUSA300_1299 OS=Staphyloc... 37.4 0.93 sp|P60108|TELL_STAAN TelA-like protein SA1238 OS=Staphylococcus a... 37.4 0.95 sp|P60107|TELL_STAAM TelA-like protein SAV1406 OS=Staphylococcus ... 37.4 0.95 sp|Q2YY12|TELL_STAAB TelA-like protein SAB1262 OS=Staphylococcus ... 37.4 0.96 sp|Q8NWS1|TELL_STAAW TelA-like protein MW1294 OS=Staphylococcus a... 37.0 1.0 sp|Q6G9F5|TELL_STAAS TelA-like protein SAS1347 OS=Staphylococcus ... 37.0 1.0 sp|B8F3P6|MUKF_GLAP5 Chromosome partition protein MukF OS=Glaesse... 37.4 1.1 sp|Q38WX8|TYSY_LATSS Thymidylate synthase OS=Latilactobacillus sa... 35.8 2.2 sp|P48479|NIM1_NEUCR G2-specific protein kinase nim-1 OS=Neurospo... 35.8 3.1 sp|A1S7B2|HFLD_SHEAM High frequency lysogenization protein HflD h... 34.7 3.7 sp|A3PBY1|MEND_PROM0 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohe... 35.0 5.2 sp|Q9HG09|PEX14_PICPA Peroxisomal membrane protein PEX14 OS=Komag... 35.0 5.3 sp|Q9PKF2|SKPL_CHLMU Skp-like protein OS=Chlamydia muridarum (str... 33.5 7.8 sp|Q9UL45|BL1S6_HUMAN Biogenesis of lysosome-related organelles c... 33.1 9.6 >sp|P0DTC2|SPIKE_SARS2 Spike glycoprotein OS=Severe acute respiratory syndrome coronavirus 2 OX=2697049 GN=S PE=1 SV=1 Length=1273 Score = 2637 bits (6834), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1273/1273 (100%), Positives = 1273/1273 (100%), Gaps = 0/1273 (0%) Query 1 MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFS 60 MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFS Sbjct 1 MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFS 60 Query 61 NVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIV 120 NVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIV Sbjct 61 NVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIV 120 Query 121 NNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLE 180 NNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLE Sbjct 121 NNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLE 180 Query 181 GKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT 240 GKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT Sbjct 181 GKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT 240 Query 241 LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETK 300 LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETK Sbjct 241 LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETK 300 Query 301 CTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISN 360 CTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISN Sbjct 301 CTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISN 360 Query 361 CVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIAD 420 CVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIAD Sbjct 361 CVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIAD 420 Query 421 YNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC 480 YNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC Sbjct 421 YNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC 480 Query 481 NGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVN 540 NGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVN Sbjct 481 NGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVN 540 Query 541 FNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITP 600 FNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITP Sbjct 541 FNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITP 600 Query 601 GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY 660 GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY Sbjct 601 GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY 660 Query 661 ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI 720 ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI Sbjct 661 ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI 720 Query 721 SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQE 780 SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQE Sbjct 721 SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQE 780 Query 781 VFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDC 840 VFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDC Sbjct 781 VFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDC 840 Query 841 LGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAM 900 LGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAM Sbjct 841 LGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAM 900 Query 901 QMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALN 960 QMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALN Sbjct 901 QMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALN 960 Query 961 TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA 1020 TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA Sbjct 961 TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA 1020 Query 1021 SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPA 1080 SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPA Sbjct 1021 SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPA 1080 Query 1081 ICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP 1140 ICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP Sbjct 1081 ICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP 1140 Query 1141 LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL 1200 LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL Sbjct 1141 LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL 1200 Query 1201 QELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDD 1260 QELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDD Sbjct 1201 QELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDD 1260 Query 1261 SEPVLKGVKLHYT 1273 SEPVLKGVKLHYT Sbjct 1261 SEPVLKGVKLHYT 1273 >sp|P59594|SPIKE_SARS Spike glycoprotein OS=Severe acute respiratory syndrome coronavirus OX=694009 GN=S PE=1 SV=1 Length=1255 Score = 2039 bits (5282), Expect = 0.0, Method: Compositional matrix adjust. Identities = 971/1277 (76%), Positives = 1109/1277 (87%), Gaps = 26/1277 (2%) Query 1 MFVFLVLLPLVSSQCVNLTTRTQ--LPPAYTN--SFTRGVYYPDKVFRSSVLHSTQDLFL 56 MF+FL+ L L S ++ T P YT S RGVYYPD++FRS L+ TQDLFL Sbjct 1 MFIFLLFLTLTSGSDLDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFL 60 Query 57 PFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQS 116 PF+SNVT FH I+ F NPV+PF DG+YFA+TEKSN++RGW+FG+T+++K+QS Sbjct 61 PFYSNVTGFHTIN-------HTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQS 113 Query 117 LLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFL 176 ++I+NN+TNVVI+ C F+ C++PF V + ++ ++ +A NCTFEY+S F Sbjct 114 VIIINNSTNVVIRACNFELCDNPFFAV----SKPMGTQTHTMIFDNAFNCTFEYISDAFS 169 Query 177 MDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINIT 236 +D+ K GNFK+LREFVFKN DG+ +Y + PI++VRDLP GF+ L+P+ LP+GINIT Sbjct 170 LDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINIT 229 Query 237 RFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPL 296 F+ +L + +P W AAAY+VGYL+P TF+LKY+ENGTITDAVDC+ +PL Sbjct 230 NFRAIL----TAFSPAQDI--WGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPL 283 Query 297 SETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRK 356 +E KC++KSF ++KGIYQTSNFRV P+ +VRFPNITNLCPFGEVFNAT+F SVYAW RK Sbjct 284 AELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVYAWERK 343 Query 357 RISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTG 416 +ISNCVADYSVLYNS FSTFKCYGVS TKLNDLCF+NVYADSFV++GD+VRQIAPGQTG Sbjct 344 KISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTG 403 Query 417 KIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAG 476 IADYNYKLPDDF GCV+AWN+ N+D+ GNYNY YR R L+PFERDIS + Sbjct 404 VIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPD 463 Query 477 STPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKN 536 PC NCY+PL YGF T G+GYQPYRVVVLSFELL+APATVCGPK ST+L+KN Sbjct 464 GKPCTP-PALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKN 522 Query 537 KCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVS 596 +CVNFNFNGLTGTGVLT S+K+F PFQQFGRD++D TD+VRDP+T EILDI+PCSFGGVS Sbjct 523 QCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVS 582 Query 597 VITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHV 656 VITPGTN S++VAVLYQDVNCT+V AIHADQLTP WR+YSTG+NVFQT+AGCLIGAEHV Sbjct 583 VITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHV 642 Query 657 NNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPT 716 + SYECDIPIGAGICASY T + RS + +SI+AYTMSLGA++S+AYSNN+IAIPT Sbjct 643 DTSYECDIPIGAGICASYHTVS----LLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPT 698 Query 717 NFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDK 776 NF+IS+TTE++PVSM KTSVDC MYICGDSTEC+NLLLQYGSFCTQLNRAL+GIA EQD+ Sbjct 699 NFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDR 758 Query 777 NTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQ 836 NT+EVFAQVKQ+YKTP +K FGGFNFSQILPDP KP+KRSFIEDLLFNKVTLADAGF+KQ Sbjct 759 NTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQ 818 Query 837 YGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQI 896 YG+CLGDI ARDLICAQKFNGLTVLPPLLTD+MIA YT+AL++GT T+GWTFGAGAALQI Sbjct 819 YGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQI 878 Query 897 PFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNA 956 PFAMQMAYRFNGIGVTQNVLYENQK IANQFN AI +IQ+SL++T++ALGKLQDVVNQNA Sbjct 879 PFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNA 938 Query 957 QALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAA 1016 QALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAA Sbjct 939 QALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAA 998 Query 1017 EIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFT 1076 EIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQ+APHGVVFLHVTYVP+QE+NFT Sbjct 999 EIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFT 1058 Query 1077 TAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNT 1136 TAPAICH+GKA+FPREGVFV NGT WF+TQRNF+ PQIITTDNTFVSGNCDVVIGI+NNT Sbjct 1059 TAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNT 1118 Query 1137 VYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNES 1196 VYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNES Sbjct 1119 VYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNES 1178 Query 1197 LIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKF 1256 LIDLQELGKYEQYIKWPWY+WLGFIAGLIAIVMVTI+LCCMTSCCSCLKG CSCGSCCKF Sbjct 1179 LIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKF 1238 Query 1257 DEDDSEPVLKGVKLHYT 1273 DEDDSEPVLKGVKLHYT Sbjct 1239 DEDDSEPVLKGVKLHYT 1255 >sp|Q3LZX1|SPIKE_BCHK3 Spike glycoprotein OS=Bat coronavirus HKU3 OX=442736 GN=S PE=3 SV=1 Length=1242 Score = 2001 bits (5184), Expect = 0.0, Method: Compositional matrix adjust. Identities = 968/1273 (76%), Positives = 1087/1273 (85%), Gaps = 35/1273 (3%) Query 1 MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFS 60 +F FL L C ++ + Q A +S RGVYY D +FRS VLH TQD FLPF S Sbjct 5 IFAFLANLAKAQEGCGIISRKPQPKMAQVSSSRRGVYYNDDIFRSDVLHLTQDYFLPFDS 64 Query 61 NVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIV 120 N+T + +++V T FDNP+L F DGVYFA+TEKSN+IRGWIFG++ D+ TQS +IV Sbjct 65 NLTQYFSLNVDSDRYT-YFDNPILDFGDGVYFAATEKSNVIRGWIFGSSFDNTTQSAVIV 123 Query 121 NNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLE 180 NN+T+++I+VC F C +P V +W VY SA NCT++ V + F +D Sbjct 124 NNSTHIIIRVCNFNLCKEPMYTVSRGTQQNAW------VYQSAFNCTYDRVEKSFQLDTT 177 Query 181 GKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT 240 K GNFK+LRE+VFKN DG+ +Y +T +NL R LP GFS L+P++ LP GINIT ++ Sbjct 178 PKTGNFKDLREYVFKNRDGFLSVYQTYTAVNLPRGLPTGFSVLKPILKLPFGINITSYRV 237 Query 241 LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETK 300 ++A+ ++S + +AAYYVG L+ TF+L++NENGTITDAVDC+ +PL+E K Sbjct 238 VMAMF------SQTTSNFLPESAAYYVGNLKYSTFMLRFNENGTITDAVDCSQNPLAELK 291 Query 301 CTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISN 360 CT+K+F V+KGIYQTSNFRV PT+ ++RFPNITN CPF +VFNATRF +VYAW R +IS+ Sbjct 292 CTIKNFNVDKGIYQTSNFRVSPTQEVIRFPNITNRCPFDKVFNATRFPNVYAWERTKISD 351 Query 361 CVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIAD 420 CVADY+VLYNS SFSTFKCYGVSP+KL DLCFT+VYAD+F+IR EVRQ+APG+TG IAD Sbjct 352 CVADYTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGETGVIAD 411 Query 421 YNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC 480 YNYKLPDDFTGCVIAWN+ D+ NY YR RK+ LKPFERD+S++ Sbjct 412 YNYKLPDDFTGCVIAWNTAKHDTG-----NYYYRSHRKTKLKPFERDLSSD-------DG 459 Query 481 NGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVN 540 NGV + L +Y F P V YQ RVVVLSFELL+APATVCGPK ST LVKN+CVN Sbjct 460 NGV------YTLSTYDFNPNVPVAYQATRVVVLSFELLNAPATVCGPKLSTELVKNQCVN 513 Query 541 FNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITP 600 FNFNGL GTGVLT S+K+F FQQFGRD +D TD+VRDPQTLEILDI+PCSFGGVSVITP Sbjct 514 FNFNGLKGTGVLTSSSKRFQSFQQFGRDTSDFTDSVRDPQTLEILDISPCSFGGVSVITP 573 Query 601 GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY 660 GTN S++VAVLYQDVNCT+VP AI ADQLTP WRVYSTG NVFQT+AGCLIGAEHVN SY Sbjct 574 GTNASSEVAVLYQDVNCTDVPTAIRADQLTPAWRVYSTGVNVFQTQAGCLIGAEHVNASY 633 Query 661 ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI 720 ECDIPIGAGICASY T + RS +SI+AYTMSLGAENS+AY+NNSIAIPTNF+I Sbjct 634 ECDIPIGAGICASYHTAS----VLRSTGQKSIVAYTMSLGAENSIAYANNSIAIPTNFSI 689 Query 721 SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQE 780 SVTTE++PVSM KT+VDCTMYICGDS ECSNLLLQYGSFCTQLNRALTGIA+EQDKNTQE Sbjct 690 SVTTEVMPVSMAKTAVDCTMYICGDSLECSNLLLQYGSFCTQLNRALTGIAIEQDKNTQE 749 Query 781 VFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDC 840 VFAQVKQ+YKTP IKDFGGFNFSQILPDPSKP+KRSFIEDLLFNKVTLADAGF+KQYGDC Sbjct 750 VFAQVKQMYKTPAIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLADAGFMKQYGDC 809 Query 841 LGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAM 900 LGD++ARDLICAQKFNGLTVLPPLLTDEM+A YT+AL++GT T+GWTFGAGAALQIPFAM Sbjct 810 LGDVSARDLICAQKFNGLTVLPPLLTDEMVAAYTAALVSGTATAGWTFGAGAALQIPFAM 869 Query 901 QMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALN 960 QMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQ+SLSSTASALGKLQDVVNQNAQALN Sbjct 870 QMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQESLSSTASALGKLQDVVNQNAQALN 929 Query 961 TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA 1020 TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA Sbjct 930 TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA 989 Query 1021 SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPA 1080 SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVP+QEKNFTTAPA Sbjct 990 SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPSQEKNFTTAPA 1049 Query 1081 ICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP 1140 ICH+GKA+FPREGVFVSNGT WF+TQRNFY PQ+ITTDNTFVSGNCDVVIGI+NNTVYDP Sbjct 1050 ICHEGKAYFPREGVFVSNGTSWFITQRNFYSPQLITTDNTFVSGNCDVVIGIINNTVYDP 1109 Query 1141 LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL 1200 LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL Sbjct 1110 LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL 1169 Query 1201 QELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDD 1260 QELGKYEQYIKWPWY+WLGFIAGLIAIVMVTI+LCCMTSCCSCLKG CSCGSCCKFDEDD Sbjct 1170 QELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDD 1229 Query 1261 SEPVLKGVKLHYT 1273 SEPVLKGVKLHYT Sbjct 1230 SEPVLKGVKLHYT 1242 >sp|Q3I5J5|SPIKE_BCRP3 Spike glycoprotein OS=Bat coronavirus Rp3/2004 OX=349344 GN=S PE=1 SV=1 Length=1241 Score = 1986 bits (5145), Expect = 0.0, Method: Compositional matrix adjust. Identities = 959/1273 (75%), Positives = 1083/1273 (85%), Gaps = 36/1273 (3%) Query 1 MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFS 60 + FL L C ++ + Q A +S RGVYY D +FRS+VLH TQD FLPF S Sbjct 5 ILAFLASLAKAQEGCGIISRKPQPKMAQVSSSRRGVYYNDDIFRSNVLHLTQDYFLPFDS 64 Query 61 NVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIV 120 N+T + +++V T FDNP+L F DGVYFA+TEKSN+IRGWIFG+T D+ TQS +IV Sbjct 65 NLTQYFSLNVDSDRFT-YFDNPILDFGDGVYFAATEKSNVIRGWIFGSTFDNTTQSAVIV 123 Query 121 NNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLE 180 NN+T+++I+VC F C +P V SW VY SA NCT++ V + F +D Sbjct 124 NNSTHIIIRVCNFNLCKEPMYTVSRGAQQSSW------VYQSAFNCTYDRVEKSFQLDTA 177 Query 181 GKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT 240 K GNFK+LRE+VFKN DG+ +Y +T +NL R LP GFS L P++ LP GINIT ++ Sbjct 178 PKTGNFKDLREYVFKNRDGFLSVYQTYTAVNLPRGLPIGFSVLRPILKLPFGINITSYRV 237 Query 241 LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETK 300 ++A+ ++S + +AAYYVG L+ TF+L +NENGTIT+A+DCA +PL+E K Sbjct 238 VMAMF------SQTTSNFLPESAAYYVGNLKYTTFMLSFNENGTITNAIDCAQNPLAELK 291 Query 301 CTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISN 360 CT+K+F V KGIYQTSNFRV PT+ ++RFPNITN CPF +VFNATRF +VYAW R +IS+ Sbjct 292 CTIKNFNVSKGIYQTSNFRVSPTQEVIRFPNITNRCPFDKVFNATRFPNVYAWERTKISD 351 Query 361 CVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIAD 420 CVADY+VLYNS SFSTFKCYGVSP+KL DLCFT+VYAD+F+IR EVRQ+APG+TG IAD Sbjct 352 CVADYTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGETGVIAD 411 Query 421 YNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC 480 YNYKLPDDFTGCVIAWN+ D Y YR RK+ LKPFERD+S++ Sbjct 412 YNYKLPDDFTGCVIAWNTAKQDQG-----QYYYRSHRKTKLKPFERDLSSDE-------- 458 Query 481 NGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVN 540 NGV L +Y F P+ V YQ RVVVLSFELL+APATVCGPK ST LVKN+CVN Sbjct 459 NGVR------TLSTYDFYPSVPVAYQATRVVVLSFELLNAPATVCGPKLSTQLVKNQCVN 512 Query 541 FNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITP 600 FNFNGL GTGVLTES+K+F FQQFGRD +D TD+VRDPQTLEILDI+PCSFGGVSVITP Sbjct 513 FNFNGLKGTGVLTESSKRFQSFQQFGRDTSDFTDSVRDPQTLEILDISPCSFGGVSVITP 572 Query 601 GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY 660 GTN S++VAVLYQDVNCT+VP AIHADQLTP WRVYSTG+NVFQT+AGCLIGAEHVN SY Sbjct 573 GTNASSEVAVLYQDVNCTDVPAAIHADQLTPAWRVYSTGTNVFQTQAGCLIGAEHVNASY 632 Query 661 ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI 720 ECDIPIGAGICASY T + RSV +SI+AYTMSLGAENS+AY+NNSIAIPTNF+I Sbjct 633 ECDIPIGAGICASYHTAST----LRSVGQKSIVAYTMSLGAENSIAYANNSIAIPTNFSI 688 Query 721 SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQE 780 SVTTE++PVSM KTSVDCTMYICGDS ECSNLLLQYGSFCTQLNRAL+GIA+EQDKNTQE Sbjct 689 SVTTEVMPVSMAKTSVDCTMYICGDSLECSNLLLQYGSFCTQLNRALSGIAIEQDKNTQE 748 Query 781 VFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDC 840 VFAQVKQ+YKTP IKDFGGFNFSQILPDPSKP+KRSFIEDLLFNKVTLADAGF+KQYG+C Sbjct 749 VFAQVKQMYKTPAIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLADAGFMKQYGEC 808 Query 841 LGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAM 900 LGDI+ARDLICAQKFNGLTVLPPLLTDEMIA YT+AL++GT T+GWTFGAG+ALQIPFAM Sbjct 809 LGDISARDLICAQKFNGLTVLPPLLTDEMIAAYTAALVSGTATAGWTFGAGSALQIPFAM 868 Query 901 QMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALN 960 QMAYRFNGIGVTQNVLYENQK IANQFN AI +IQ+SL++T++ALGKLQDVVNQNAQALN Sbjct 869 QMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALN 928 Query 961 TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA 1020 TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA Sbjct 929 TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA 988 Query 1021 SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPA 1080 SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQ+APHGVVFLHVTYVP+QE+NFTTAPA Sbjct 989 SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPA 1048 Query 1081 ICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP 1140 ICH+GKA+FPREGVFVSNGT WF+TQRNFY PQIITTDNTFV+G+CDVVIGI+NNTVYDP Sbjct 1049 ICHEGKAYFPREGVFVSNGTSWFITQRNFYSPQIITTDNTFVAGSCDVVIGIINNTVYDP 1108 Query 1141 LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL 1200 LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL Sbjct 1109 LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL 1168 Query 1201 QELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDD 1260 QELGKYEQYIKWPWY+WLGFIAGLIAIVMVTI+LCCMTSCCSCLKG CSCGSCCKFDEDD Sbjct 1169 QELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDD 1228 Query 1261 SEPVLKGVKLHYT 1273 SEPVLKGVKLHYT Sbjct 1229 SEPVLKGVKLHYT 1241 >sp|Q0Q475|SPIKE_BC279 Spike glycoprotein OS=Bat coronavirus 279/2005 OX=389167 GN=S PE=3 SV=1 Length=1241 Score = 1974 bits (5113), Expect = 0.0, Method: Compositional matrix adjust. Identities = 953/1275 (75%), Positives = 1081/1275 (85%), Gaps = 38/1275 (3%) Query 1 MFVFLVLLPLVSSQ--CVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPF 58 + +F +L L +Q C ++ + Q +S RGVYY D +FRS VLH TQD FLPF Sbjct 3 VLIFALLFSLAKAQEGCGIISRKPQPKMEKVSSSRRGVYYNDDIFRSDVLHLTQDYFLPF 62 Query 59 FSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLL 118 SN+T + ++++ +N FDNP+L F DGVYFA+TEKSN+IRGWIFG++ D+ TQS + Sbjct 63 DSNLTQYFSLNID-SNKYTYFDNPILDFGDGVYFAATEKSNVIRGWIFGSSFDNTTQSAI 121 Query 119 IVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMD 178 IVNN+T+++I+VC F C +P V SW VY SA NCT++ V + F +D Sbjct 122 IVNNSTHIIIRVCNFNLCKEPMYTVSKGTQQSSW------VYQSAFNCTYDRVEKSFQLD 175 Query 179 LEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRF 238 K GNFK+LRE+VFKN DG+ +Y +T +NL R P GFS L P++ LP GINIT + Sbjct 176 TAPKTGNFKDLREYVFKNRDGFLSVYQTYTAVNLPRGFPAGFSVLRPILKLPFGINITSY 235 Query 239 QTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSE 298 + ++ + + +S + +AAYYVG L+ TF+L +NENGTITDAVDC+ +PL+E Sbjct 236 RVVMTMFSQF------NSNFLPESAAYYVGNLKYTTFMLSFNENGTITDAVDCSQNPLAE 289 Query 299 TKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRI 358 KCT+K+F V KGIYQTSNFRV PT+ +VRFPNITN CPF +VFNA+RF +VYAW R +I Sbjct 290 LKCTIKNFNVSKGIYQTSNFRVTPTQEVVRFPNITNRCPFDKVFNASRFPNVYAWERTKI 349 Query 359 SNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKI 418 S+CVADY+VLYNS SFSTFKCYGVSP+KL DLCFT+VYAD+F+IR EVRQ+APG+TG I Sbjct 350 SDCVADYTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGETGVI 409 Query 419 ADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGST 478 ADYNYKLPDDFTGCVIAWN+ D Y YR +RK LKPFERD+S++ Sbjct 410 ADYNYKLPDDFTGCVIAWNTAQQDQG-----QYYYRSYRKEKLKPFERDLSSDE------ 458 Query 479 PCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKC 538 NGV + L +Y F P+ V YQ RVVVLSFELL+APATVCGPK ST LVKN+C Sbjct 459 --NGV------YTLSTYDFYPSIPVEYQATRVVVLSFELLNAPATVCGPKLSTQLVKNQC 510 Query 539 VNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVI 598 VNFNFNGL GTGVLT S+K+F FQQFGRD +D TD+VRDPQTLEILDI+PCSFGGVSVI Sbjct 511 VNFNFNGLRGTGVLTTSSKRFQSFQQFGRDTSDFTDSVRDPQTLEILDISPCSFGGVSVI 570 Query 599 TPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNN 658 TPGTN S++VAVLYQDVNCT+VP +IHADQLTP WRVYSTG NVFQT+AGCLIGAEHVN Sbjct 571 TPGTNASSEVAVLYQDVNCTDVPTSIHADQLTPAWRVYSTGVNVFQTQAGCLIGAEHVNA 630 Query 659 SYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNF 718 SYECDIPIGAGICASY T + RS +SI+AYTMSLGAENS+AY+NNSIAIPTNF Sbjct 631 SYECDIPIGAGICASYHTAS----VLRSTGQKSIVAYTMSLGAENSIAYANNSIAIPTNF 686 Query 719 TISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNT 778 +ISVTTE++PVS+ KTSVDCTMYICGDS ECSNLLLQYGSFCTQLNRALTGIA+EQDKNT Sbjct 687 SISVTTEVMPVSIAKTSVDCTMYICGDSLECSNLLLQYGSFCTQLNRALTGIAIEQDKNT 746 Query 779 QEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYG 838 QEVFAQVKQ+YKTP IKDFGGFNFSQILPDPSKP+KRSFIEDLLFNKVTLADAGF+KQYG Sbjct 747 QEVFAQVKQMYKTPAIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLADAGFMKQYG 806 Query 839 DCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPF 898 +CLGDI+ARDLICAQKFNGLTVLPPLLTDEMIA YT+AL++GT T+GWTFGAG+ALQIPF Sbjct 807 ECLGDISARDLICAQKFNGLTVLPPLLTDEMIAAYTAALVSGTATAGWTFGAGSALQIPF 866 Query 899 AMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQA 958 AMQMAYRFNGIGVTQNVLYENQK IANQFN AI +IQ+SL++T++ALGKLQDVVN NAQA Sbjct 867 AMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNDNAQA 926 Query 959 LNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEI 1018 LNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEI Sbjct 927 LNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEI 986 Query 1019 RASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTA 1078 RASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQ+APHGVVFLHVTYVP+QE+NFTTA Sbjct 987 RASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTA 1046 Query 1079 PAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVY 1138 PAICH+GKA+FPREGVFVSNGT WF+TQRNFY PQIITTDNTFV+GNCDVVIGI+NNTVY Sbjct 1047 PAICHEGKAYFPREGVFVSNGTSWFITQRNFYSPQIITTDNTFVAGNCDVVIGIINNTVY 1106 Query 1139 DPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLI 1198 DPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLI Sbjct 1107 DPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLI 1166 Query 1199 DLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDE 1258 DLQELGKYEQYIKWPWY+WLGFIAGLIAIVMVTI+LCCMTSCCSCLKG CSCGSCCKFDE Sbjct 1167 DLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDE 1226 Query 1259 DDSEPVLKGVKLHYT 1273 DDSEPVLKGVKLHYT Sbjct 1227 DDSEPVLKGVKLHYT 1241 >sp|A3EXG6|SPIKE_BCHK9 Spike glycoprotein OS=Bat coronavirus HKU9 OX=694006 GN=S PE=1 SV=1 Length=1274 Score = 614 bits (1584), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/1286 (33%), Positives = 648/1286 (50%), Gaps = 118/1286 (9%) Query 36 VYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIH-VSGTNGTKRFDNPVLPFNDGVYF-- 92 V PD S Q+LF+ SN + +G NG ++ ++P + G++ Sbjct 45 VLLPDPYIAYSGQTLRQNLFMADMSNTILYPVTPPANGANGGFIYNTSIIPVSAGLFVNT 104 Query 93 -------ASTEKSNIIRGWIFGTTLDSKTQSLLIV-------------NNATNVVIKVCE 132 +S G FG T ++ ++LI+ N TN+ + VC Sbjct 105 WMYRQPASSRAYCQEPFGVAFGDTFENDRIAILIMAPDNLGSWSAVAPRNQTNIYLLVCS 164 Query 133 -FQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLRE 191 C +P G S++ + V +N+C +V+ F +++ + + Sbjct 165 NATLCINP--GFNRWGPAGSFIAPDALV-DHSNSC---FVNNTFSVNISTSRISLA---- 214 Query 192 FVFKNIDGYFKIY-SKHTPI-NLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRS-Y 248 F+FK DG IY S P N +G + + LP+G N+ R Q ++ RS Sbjct 215 FLFK--DGDLLIYHSGWLPTSNFEHGFSRGSHPMTYFMSLPVGGNLPRAQFFQSIVRSNA 272 Query 249 LTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTV 308 + GD T +V +L R L+ Y NG++ +A DCA E C SF Sbjct 273 IDKGDGMC--TNFDVNLHVAHLINRDLLVSYFNNGSVANAADCADSAAEELYCVTGSFDP 330 Query 309 EKGIYQTSNFRVQPTESIVRFPNITNLC--PFGEVFNATRFASVYAWNRKRISNCVADYS 366 G+Y S +R Q VR + C P+ + + + W R + +CV D++ Sbjct 331 PTGVYPLSRYRAQ-VAGFVRVTQRGSYCTPPYSVLQDPPQ---PVVWRRYMLYDCVFDFT 386 Query 367 VLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP 426 V+ +S +CYGVSP +L +C+ +V D I + + + YNY LP Sbjct 387 VVVDSLPTHQLQCYGVSPRRLASMCYGSVTLDVMRINETHLNNLFNRVPDTFSLYNYALP 446 Query 427 DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGF 486 D+F GC+ A+ N+ Y + + +KP R Q+ S + V Sbjct 447 DNFYGCLHAFYLNSTAP---------YAVANRFPIKPGGR-------QSNSAFIDTV--- 487 Query 487 NCYFPLQSYGFQPTNGVGYQP----YRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFN 542 N Y P Y + V++ + VC T ++ ++CV +N Sbjct 488 -------------INAAHYSPFSYVYGLAVITLKPAAGSKLVCPVANDTVVITDRCVQYN 534 Query 543 FNGLTGTGVLTESNKKFLP-FQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPG 601 G TGTGVL+++ +P + F T V T I PC VSV G Sbjct 535 LYGYTGTGVLSKNTSLVIPDGKVFTASSTGTIIGVSINST--TYSIMPCVTVPVSV---G 589 Query 602 TNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY- 660 + + + A+L+ ++C++ A+ + ++ W +T + F T +GC++ E N + Sbjct 590 YHPNFERALLFNGLSCSQRSRAV-TEPVSVLWSASATAQDAFDTPSGCVVNVELRNTTIV 648 Query 661 -ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNS---IAIPT 716 C +PIG +C + + + A S+ ++ Y +NS A + +PT Sbjct 649 NTCAMPIGNSLC--FINGSIATANADSLPRLQLVNYDPLY--DNSTATPMTPVYWVKVPT 704 Query 717 NFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDK 776 NFT+S T E + + K ++DC Y+CGDS+ C N+LL YG+FC +N+AL+ ++ D Sbjct 705 NFTLSATEEYIQTTAPKITIDCARYLCGDSSRCLNVLLHYGTFCNDINKALSRVSTILDS 764 Query 777 NTQEVFAQVKQIYKTPPIKDF---GGFNFSQIL----PDPSKPSKRSFIEDLLFNKVTLA 829 + ++ I + F G +NF+ ++ P+ + RS DLL++KV + Sbjct 765 ALLSLVKELS-INTRDEVTTFSFDGDYNFTGLMGCLGPNCGATTYRSAFSDLLYDKVRIT 823 Query 830 DAGFIKQYGDCL-----GDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITS 884 D GF++ Y C+ G I RDL+C Q +NG+ VLPP+++ M A YTS L+ +S Sbjct 824 DPGFMQSYQKCIDSQWGGSI--RDLLCTQTYNGIAVLPPIVSPAMQALYTSLLVGAVASS 881 Query 885 GWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASA 944 G+TFG +A IPFA Q+ +R NGIGVT VL ENQKLIA+ FN+A+ IQ + T+ A Sbjct 882 GYTFGITSAGVIPFATQLQFRLNGIGVTTQVLVENQKLIASSFNNALVNIQKGFTETSIA 941 Query 945 LGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSL 1004 L K+QDV+NQ+A L+TLV QL ++FGAISS +N+I SRL+ + A ++DRLI GR+ L Sbjct 942 LSKMQDVINQHAAQLHTLVVQLGNSFGAISSSINEIFSRLEGLAANAEVDRLINGRMMVL 1001 Query 1005 QTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLH 1064 TYVTQ LI+A+E +A LAA K+SECV QS R DFCG G H++S PQ AP+GV+F+H Sbjct 1002 NTYVTQLLIQASEAKAQNALAAQKISECVKAQSLRNDFCGNGTHVLSIPQLAPNGVLFIH 1061 Query 1065 VTYVPAQEKNFTTAPAICHDGKAHFPREGVFV--SNGTHWFVTQRNFYEPQIITTDNTFV 1122 Y P + T+ +CH+G + PR+G+FV +N W T FY P I+ NT V Sbjct 1062 YAYTPTEYAFVQTSAGLCHNGTGYAPRQGMFVLPNNTNMWHFTTMQFYNPVNISASNTQV 1121 Query 1123 SGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKE 1182 +C V VN TV +P P F++E DK++KN ++ + + + N S V++ + Sbjct 1122 LTSCSVNYTSVNYTVLEPSVPGDYDFQKEFDKFYKNLSTIFNNTFNPNDFNFSTVDVTAQ 1181 Query 1183 IDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCS 1242 I L++V LN+S IDL++L YE+ IKWPWY+WL IAG++ +V+ IML CMT+CCS Sbjct 1182 IKSLHDVVNQLNQSFIDLKKLNVYEKTIKWPWYVWLAMIAGIVGLVLAVIMLMCMTNCCS 1241 Query 1243 CLKGCCSCGSCC-KFDE-DDSEPVLK 1266 C KG C C CC +D DD P ++ Sbjct 1242 CFKGMCDCRRCCGSYDSYDDVYPAVR 1267 >sp|A3EXD0|SPIKE_BCHK5 Spike glycoprotein OS=Bat coronavirus HKU5 OX=694008 GN=S PE=1 SV=1 Length=1352 Score = 600 bits (1546), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/1067 (37%), Positives = 564/1067 (53%), Gaps = 71/1067 (7%) Query 246 RSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKS 305 RS +P + W AA+Y+ L P T+LL ++ G IT AVDC D L++ +C+ +S Sbjct 306 RSIRSPFNDRKAW----AAFYIYKLHPLTYLLNFDVEGYITKAVDCGYDDLAQLQCSYES 361 Query 306 FTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADY 365 F VE G+Y S+F P + T C F + T +Y + R +NC + Sbjct 362 FEVETGVYSVSSFEASPRGEFIE-QATTQECDFTPMLTGTP-PPIYNFKRLVFTNCNYNL 419 Query 366 SVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKL 425 + L + S F C+ VSP+ L C++++ D F D + PG G I +NYK Sbjct 420 TKLLSLFQVSEFSCHQVSPSSLATGCYSSLTVDYFAYSTDMSSYLQPGSAGAIVQFNYK- 478 Query 426 PDDF---TGCVIAWNSNNLDSKVG-GNYNYLYRLFRKSNLKPFERDISTEIYQA--GSTP 479 DF T V+A NL + NY YL ++ S +Y A TP Sbjct 479 -QDFSNPTCRVLATVPQNLTTITKPSNYAYLTECYKTSAYG------KNYLYNAPGAYTP 531 Query 480 CNGV--EGFNCYFPLQSYGFQPTNGVGY----QPYRVVVLSFELLHAPATVCGPKKSTN- 532 C + GF+ + S G T G Y ++S + +VC + N Sbjct 532 CLSLASRGFSTKYQSHSDGELTTTGYIYPVTGNLQMAFIISVQYGTDTNSVCPMQALRND 591 Query 533 -LVKNK---CVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDIT 588 +++K CV ++ +G+TG GV L Q+F D D + Sbjct 592 TSIEDKLDVCVEYSLHGITGRGVFHNCTSVGLRNQRFVYDTFDNLVGYHSDNG-NYYCVR 650 Query 589 PCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA-DQLTPTWRVYSTGSNVFQTRA 647 PC VSVI SN A L+ V C+ V + ++T T + T QT Sbjct 651 PCVSVPVSVIY--DKASNSHATLFGSVACSHVTTMMSQFSRMTKTNLLARTTPGPLQTTV 708 Query 648 GCLIGAEHVNNSY---ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS 704 GC +G +N+S EC +P+G +CA T ++ RRA S AS T++ + + Sbjct 709 GCAMG--FINSSMVVDECQLPLGQSLCAIPPTTSSRVRRATSGASDVFQIATLNFTSPLT 766 Query 705 VAYSNNS---IAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCT 761 +A N++ +A+PTNFT VT E + ++ K +VDC Y+C +C +LL +YG FC+ Sbjct 767 LAPINSTGFVVAVPTNFTFGVTQEFIETTIQKITVDCKQYVCNGFKKCEDLLKEYGQFCS 826 Query 762 QLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDF--GGFNFSQI-LPDPSKPSK--RS 816 ++N+AL G + QD++ +F+ +K T P++ G FN + + +P + + RS Sbjct 827 KINQALHGANLRQDESIANLFSSIK-TQNTQPLQAGLNGDFNLTMLQIPQVTTGERKYRS 885 Query 817 FIEDLLFNKVTLADAGFIKQYGDCL--GDIAARDLICAQKFNGLTVLPPLLTDEMIAQYT 874 IEDLLFNKVT+AD G+++ Y +C+ G +ARDLICAQ G VLPPL M A YT Sbjct 886 TIEDLLFNKVTIADPGYMQGYDECMQQGPQSARDLICAQYVAGYKVLPPLYDPYMEAAYT 945 Query 875 SALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKI 934 S+LL + WT G + IPFA + YR NG+G+TQ VL ENQK+IAN+FN A+G + Sbjct 946 SSLLGSIAGASWTAGLSSFAAIPFAQSIFYRLNGVGITQQVLSENQKIIANKFNQALGAM 1005 Query 935 QDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQID 994 Q ++T A K+QD VN NA AL+ L +LS+ FGAISS ++DIL+RLD VE E QID Sbjct 1006 QTGFTTTNLAFNKVQDAVNANAMALSKLAAELSNTFGAISSSISDILARLDTVEQEAQID 1065 Query 995 RLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQ 1054 RLI GRL SL +V QQL+R SA LA K++ECV QSKR FCG G H++SF Sbjct 1066 RLINGRLTSLNAFVAQQLVRTEAAARSAQLAQDKVNECVKSQSKRNGFCGTGTHIVSFAI 1125 Query 1055 SAPHGVVFLHVTYVPAQEKNFTTAPAICHD---GKAHFPREGVFVSNGT---------HW 1102 +AP+G+ F HV Y P N T A +C+ K P +G FV N T W Sbjct 1126 NAPNGLYFFHVGYQPTSHVNATAAYGLCNTENPQKCIAPIDGYFVLNQTTSTVADSDQQW 1185 Query 1103 FVTQRNFYEPQIITTDNT-FVSGNCDVVIGIVNNTVYDPL---QPELDSFKEELDKYFKN 1158 + T +F+ P+ IT N+ +VS DV + N + PL +LD FKEEL+++FKN Sbjct 1186 YYTGSSFFHPEPITEANSKYVS--MDVKFENLTNRLPPPLLSNSTDLD-FKEELEEFFKN 1242 Query 1159 HTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWL 1218 +S + +IS IN +++N+ E+ L+EV K LNES IDL+ELG Y Y KWPWYIWL Sbjct 1243 VSSQGPNFQEISKINTTLLNLNTELMVLSEVVKQLNESYIDLKELGNYTFYQKWPWYIWL 1302 Query 1219 GFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCC-KFDEDDSEPV 1264 GFIAGL+A+ + + C T C + G C CC +DE + E + Sbjct 1303 GFIAGLVALALCVFFILCCTGCGTSCLGKLKCNRCCDSYDEYEVEKI 1349 >sp|Q0Q4F2|SPIKE_BC133 Spike glycoprotein OS=Bat coronavirus 133/2005 OX=389230 GN=S PE=3 SV=1 Length=1350 Score = 571 bits (1471), Expect = 5e-180, Method: Compositional matrix adjust. Identities = 398/1096 (36%), Positives = 568/1096 (52%), Gaps = 91/1096 (8%) Query 232 GINITRFQTL---------LALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN 282 G N+ RF TL + RS+ + + W AA+YV L T+LL ++ + Sbjct 280 GGNMFRFATLPVYEGIKYYTVIPRSFRSKANKREAW----AAFYVYKLHQLTYLLDFSVD 335 Query 283 GTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVF 342 G I A+DC D LS+ C+ SF V+ G+Y S++ T + + PN+T C F + Sbjct 336 GYIRRAIDCGHDDLSQLHCSYTSFEVDTGVYSVSSYEASATGTFIEQPNVTE-CDFSPML 394 Query 343 NATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVI 402 VY + R SNC + + L + + F C G+SP + C++ + D F Sbjct 395 TGVA-PQVYNFKRLVFSNCNYNLTKLLSLFAVDEFSCNGISPDAIARGCYSTLTVDYFAY 453 Query 403 RGDEVRQIAPGQTGKIADYNYKLPDDFTGC-VIAWNSNNLDSKVGGNYNYLYRLFRKSNL 461 I PG G I YNYK C V+A +N+ G Y Y+ + R L Sbjct 454 PLSMKSYIRPGSAGNIPLYNYKQSFANPTCRVMASVPDNVTITKPGAYGYISKCSR---L 510 Query 462 KPFERDISTEIYQAGSTPCNGVEGFNC--YFPL--------------QSYGFQPTNGVGY 505 +DI T +Y N E C + PL Q G GVG Sbjct 511 TGVNQDIETPLY------INPGEYSICRDFAPLGFSEDGQVFKRTLTQFEGGGLLIGVGT 564 Query 506 Q-PYRV-----VVLSFELLHAPATVC-----GPKKSTNLVKNKCVNFNFNGLTGTGVLTE 554 + P V+S + +VC G + KCV+++ G+TG GV Sbjct 565 RVPMTANLEMGFVISVQYGTGTDSVCPMLDLGDSLTITNRLGKCVDYSLYGVTGRGVFQN 624 Query 555 SNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQD 614 + Q+F D D + PC VSVI ++N A L+ Sbjct 625 CTAVGVKQQRFVYDSFDNLVGYYSDDG-NYYCVRPCVSVPVSVIY--DKSTNLHATLFGS 681 Query 615 VNCTEVPVAIHA-DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY---ECDIPIGAGI 670 V C V + +LT + + QT GC+IG NNS +C +P+G + Sbjct 682 VACEHVTTMMSQFSRLTQSNLRRRDSNTPLQTAVGCVIGLS--NNSLVVSDCKLPLGQSL 739 Query 671 CASYQTQTNSPRRARSVASQ---SIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEIL 727 CA S R+ S ASQ +++ YT + + S + AIPTNF+ S+T E + Sbjct 740 CA---VPPVSMFRSYS-ASQFQLAVLNYTSPI-VVTPINSSGFTAAIPTNFSFSLTQEYI 794 Query 728 PVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQ 787 S+ K +VDC Y+C T C LL++YG FC+++N+AL G + QD++ +++ +K Sbjct 795 ETSIQKVTVDCKQYVCNGFTRCEKLLVEYGQFCSKINQALHGANLRQDESVYSLYSNIKT 854 Query 788 IY-KTPPIKDFGGFNFSQI-LPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCL--GD 843 +T G FN + + +P S RS IEDLLF+KVT+AD G+++ Y DC+ G Sbjct 855 TSTQTLEYGLNGDFNLTLLQVPQIGGSSYRSAIEDLLFDKVTIADPGYMQGYDDCMKQGP 914 Query 844 IAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMA 903 +ARDLICAQ +G VLPPL M A YTS+LL +GWT G + IPFA M Sbjct 915 QSARDLICAQYVSGYKVLPPLYDPNMEAAYTSSLLGSIAGAGWTAGLSSFAAIPFAQSMF 974 Query 904 YRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLV 963 YR NG+G+TQ VL ENQKLIAN+FN A+G +Q +++ A K+QD VN NAQAL+ L Sbjct 975 YRLNGVGITQQVLSENQKLIANKFNQALGAMQTGFTTSNLAFSKVQDAVNANAQALSKLA 1034 Query 964 KQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASAN 1023 +LS+ FGAISS ++DIL+RLD VE + QIDRLI GRL SL +V+QQL+R+ SA Sbjct 1035 SELSNTFGAISSSISDILARLDTVEQDAQIDRLINGRLTSLNAFVSQQLVRSETAARSAQ 1094 Query 1024 LAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICH 1083 LA+ K++ECV QSKR FCG G H++SF +AP+G F HV YVP N T A +C+ Sbjct 1095 LASDKVNECVKSQSKRNGFCGSGTHIVSFVVNAPNGFYFFHVGYVPTNYTNVTAAYGLCN 1154 Query 1084 DGKAHF---PREGVFVSN-------GTHWFVTQRNFYEPQIITTDNT-FVSGNCDVVIGI 1132 P +G F++N T W+ T +F++P+ IT N+ +VS DV Sbjct 1155 HNNPPLCIAPIDGYFITNQTTTYSVDTEWYYTGSSFFKPEPITQANSRYVSS--DVKFEK 1212 Query 1133 VNNTVYDPL---QPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEV 1189 + N + PL ++D FK+EL+++FKN TS + +IS IN +++++ E+ L EV Sbjct 1213 LENNLPPPLLENSTDVD-FKDELEEFFKNVTSHGPNFAEISKINTTLLDLSDEMAILQEV 1271 Query 1190 AKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCS 1249 K LN+S IDL+ELG Y Y KWPWYIWLGFIAGL+A+++ L C T C + G Sbjct 1272 VKQLNDSYIDLKELGNYTYYNKWPWYIWLGFIAGLVALLLCVFFLLCCTGCGTSCLGKMK 1331 Query 1250 CGSCC-KFDEDDSEPV 1264 C +CC ++E D E + Sbjct 1332 CKNCCDSYEEYDVEKI 1347 >sp|K9N5Q8|SPIKE_MERS1 Spike glycoprotein OS=Middle East respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012) OX=1263720 GN=S PE=1 SV=1 Length=1353 Score = 554 bits (1427), Expect = 1e-173, Method: Compositional matrix adjust. Identities = 372/1057 (35%), Positives = 548/1057 (52%), Gaps = 76/1057 (7%) Query 263 AAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQP 322 AA+YV LQP TFLL ++ +G I A+DC + LS+ C+ +SF VE G+Y S+F +P Sbjct 311 AAFYVYKLQPLTFLLDFSVDGYIRRAIDCGFNDLSQLHCSYESFDVESGVYSVSSFEAKP 370 Query 323 TESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGV 382 + S+V C F + + T VY + R +NC + + L + S + F C + Sbjct 371 SGSVVEQAEGVE-CDFSPLLSGTP-PQVYNFKRLVFTNCNYNLTKLLSLFSVNDFTCSQI 428 Query 383 SPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVI-AWNSNNL 441 SP + C++++ D F ++ G I+ +NYK C+I A +NL Sbjct 429 SPAAIASNCYSSLILDYFSYPLSMKSDLSVSSAGPISQFNYKQSFSNPTCLILATVPHNL 488 Query 442 DSKVGG-NYNYLYRLFRKSNLKPFERDISTEIYQAGS----TPCNGV------EGFNCYF 490 + Y+Y+ + R F D TE+ Q + +PC + E + Y Sbjct 489 TTITKPLKYSYINKCSR------FLSDDRTEVPQLVNANQYSPCVSIVPSTVWEDGDYYR 542 Query 491 ----PLQSYGFQPTNGVGYQPYRVVVLSFELLHAPAT----VCGPKKSTNLVK-----NK 537 PL+ G+ +G + + F + T VC + N K Sbjct 543 KQLSPLEGGGWLVASGSTVAMTEQLQMGFGITVQYGTDTNSVCPKLEFANDTKIASQLGN 602 Query 538 CVNFNFNGLTGTGVLTESNKKFLPFQQFGRDI-ADTTDAVRDPQTLEILDITPCSFGGVS 596 CV ++ G++G GV + Q+F D + D L C VS Sbjct 603 CVEYSLYGVSGRGVFQNCTAVGVRQQRFVYDAYQNLVGYYSDDGNYYCL--RACVSVPVS 660 Query 597 VITPGTNTSNQVAVLYQDVNCTEVPVAI--HADQLTPTWRVYSTGSNVFQTRAGCLIGAE 654 VI ++ A L+ V C + + ++ + + QT GC++G Sbjct 661 VIYDKETKTH--ATLFGSVACEHISSTMSQYSRSTRSMLKRRDSTYGPLQTPVGCVLGL- 717 Query 655 HVNNSY---ECDIPIGAGICASYQT-QTNSPRRARSVASQSIIAYTMSLGAENSVAYSNN 710 VN+S +C +P+G +CA T T +PR RSV + +A +++ V N+ Sbjct 718 -VNSSLFVEDCKLPLGQSLCALPDTPSTLTPRSVRSVPGEMRLA-SIAFNHPIQVDQLNS 775 Query 711 S---IAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRAL 767 S ++IPTNF+ VT E + ++ K +VDC Y+C +C LL +YG FC+++N+AL Sbjct 776 SYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQLLREYGQFCSKINQAL 835 Query 768 TGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGG-FNFSQILP---DPSKPSKRSFIEDLLF 823 G + QD + + +FA VK +P I FGG FN + + P S RS IEDLLF Sbjct 836 HGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPVSISTGSRSARSAIEDLLF 895 Query 824 NKVTLADAGFIKQYGDCL--GDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGT 881 +KVT+AD G+++ Y DC+ G +ARDLICAQ G VLPPL+ M A YTS+LL Sbjct 896 DKVTIADPGYMQGYDDCMQQGPASARDLICAQYVAGYKVLPPLMDVNMEAAYTSSLLGSI 955 Query 882 ITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSST 941 GWT G + IPFA + YR NG+G+TQ VL ENQKLIAN+FN A+G +Q ++T Sbjct 956 AGVGWTAGLSSFAAIPFAQSIFYRLNGVGITQQVLSENQKLIANKFNQALGAMQTGFTTT 1015 Query 942 ASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRL 1001 A K+QD VN NAQAL+ L +LS+ FGAIS+ + DI+ RLD +E + QIDRLI GRL Sbjct 1016 NEAFHKVQDAVNNNAQALSKLASELSNTFGAISASIGDIIQRLDVLEQDAQIDRLINGRL 1075 Query 1002 QSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVV 1061 +L +V QQL+R+ SA LA K++ECV QSKR FCG+G H++SF +AP+G+ Sbjct 1076 TTLNAFVAQQLVRSESAALSAQLAKDKVNECVKAQSKRSGFCGQGTHIVSFVVNAPNGLY 1135 Query 1062 FLHVTYVPAQEKNFTTAPAICHDGKAH---FPREGVFV-SNGT----HWFVTQRNFYEPQ 1113 F+HV Y P+ +A +C P G F+ +N T W T +FY P+ Sbjct 1136 FMHVGYYPSNHIEVVSAYGLCDAANPTNCIAPVNGYFIKTNNTRIVDEWSYTGSSFYAPE 1195 Query 1114 IITTDNTFVSGNCDVVIGIVNNTVYDPLQPEL------DSFKEELDKYFKNHTSPDVDLG 1167 IT+ NT V + + L P L F++ELD++FKN ++ + G Sbjct 1196 PITSLNTKY-----VAPQVTYQNISTNLPPPLLGNSTGIDFQDELDEFFKNVSTSIPNFG 1250 Query 1168 DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAI 1227 ++ IN +++++ E+ L +V K LNES IDL+ELG Y Y KWPWYIWLGFIAGL+A+ Sbjct 1251 SLTQINTTLLDLTYEMLSLQQVVKALNESYIDLKELGNYTYYNKWPWYIWLGFIAGLVAL 1310 Query 1228 VMVTIMLCCMTSCCSCLKGCCSCGSCC-KFDEDDSEP 1263 + + C T C + G C CC +++E D EP Sbjct 1311 ALCVFFILCCTGCGTNCMGKLKCNRCCDRYEEYDLEP 1347 >sp|P11225|SPIKE_CVMJH Spike glycoprotein OS=Murine coronavirus (strain JHM) OX=11144 GN=S PE=1 SV=1 Length=1235 Score = 526 bits (1354), Expect = 3e-164, Method: Compositional matrix adjust. Identities = 421/1347 (31%), Positives = 623/1347 (46%), Gaps = 191/1347 (14%) Query 1 MFVFLVLLP--------LVSSQCVNLTTRTQLPPAYTN-----SFTRGVYYP-DKVFRSS 46 +FVF++LLP Q VN P+ + S RG YY D+V+ ++ Sbjct 2 LFVFILLLPSCLGYIGDFRCIQTVNYNGNNASAPSISTEAVDVSKGRGTYYVLDRVYLNA 61 Query 47 VLHSTQDLFLPFFSNVTWFHAIHVSGTN--GTKRFDNPVL-PFNDGVYF----------- 92 L T + P + + + + ++GTN F P L FNDG++ Sbjct 62 TLLLTG--YYPV--DGSNYRNLALTGTNTLSLTWFKPPFLSEFNDGIFAKVQNLKTNTPT 117 Query 93 -ASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKS 151 A++ I+ G +FG T S T L NN ++ VC + C P+ + N Sbjct 118 GATSYFPTIVIGSLFGNT--SYTVVLEPYNNI--IMASVCTYTICQLPYTPCKPNTNGNR 173 Query 152 ----W-MESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSK 206 W + + + N TF V+ P+L F F G F Y Sbjct 174 VIGFWHTDVKPPICLLKRNFTFN-VNAPWLY--------------FHFYQQGGTFYAYYA 218 Query 207 HTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAG---AA 263 P SA L + IG +T++ L + TP TAG A Sbjct 219 DKP-----------SATTFLFSVYIGDILTQYFVLPFI----CTP-------TAGSTLAP 256 Query 264 AYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPT 323 Y+V L R +L +NE G IT AVDCA +SE KC +S G+Y S + VQP Sbjct 257 LYWVTPLLKRQYLFNFNEKGVITSAVDCASSYISEIKCKTQSLLPSTGVYDLSGYTVQPV 316 Query 324 ESIVR-FPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGV 382 + R PN+ + C E A S W R+ NC + S L + C + Sbjct 317 GVVYRRVPNLPD-CKIEEWLTAKSVPSPLNWERRTFQNCNFNLSSLLRYVQAESLSCNNI 375 Query 383 SPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLD 442 +K+ +CF +V D F I + G +G + NYK+ T C Sbjct 376 DASKVYGMCFGSVSVDKFAIPRSRQIDLQIGNSGFLQTANYKIDTAATSC---------- 425 Query 443 SKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNG 502 LY K+N+ + +N + YGF+ + Sbjct 426 --------QLYYSLPKNNVT--------------------INNYNPSSWNRRYGFKVND- 456 Query 503 VGYQPYRVVVLSFELLHA--PATVCGPK---KSTNLVKNKCVNFNFNGLTGTGVLTESNK 557 R + + LL+ T C +T + CV ++ G+TG GV E Sbjct 457 ------RCQIFANILLNGINSGTTCSTDLQLPNTEVATGVCVRYDLYGITGQGVFKEVKA 510 Query 558 KFL-PFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVN 616 + +Q D+ + RD T + I C G VS + + A+LY+++N Sbjct 511 DYYNSWQALLYDVNGNLNGFRDLTTNKTYTIRSCYSGRVSAAY--HKEAPEPALLYRNIN 568 Query 617 CTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY--ECDIPIGAGICASY 674 C+ V + + P N F + GC++ A++ + C++ +GAG+C Y Sbjct 569 CSYVFTNNISREENPL--------NYFDSYLGCVVNADNRTDEALPNCNLRMGAGLCVDY 620 Query 675 QTQTNSPRRARSVASQSIIAYT----MSLGAENSVAYSNN--SIAIPTNFTISVTTEILP 728 RRAR S T M + +SV + IPTNFTI E + Sbjct 621 SKS----RRARRSVSTGYRLTTFEPYMPMLVNDSVQSVGGLYEMQIPTNFTIGHHEEFIQ 676 Query 729 VSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQ- 787 + K ++DC ++CGD+ C L++YGSFC +N L + D +V + + Q Sbjct 677 IRAPKVTIDCAAFVCGDNAACRQQLVEYGSFCDNVNAILNEVNNLLDNMQLQVASALMQG 736 Query 788 ---IYKTP-----PIKDFGGFNFSQILP-----------DPSKPSKRSFIEDLLFNKVTL 828 + P PI D NFS +L PS RS IEDLLF+KV L Sbjct 737 VTISSRLPDGISGPIDDI---NFSPLLGCIGSTCAEDGNGPSAIRGRSAIEDLLFDKVKL 793 Query 829 ADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTF 888 +D GF++ Y +C G RDL+C Q FNG+ VLPP+L++ I+ YT+ A + WT Sbjct 794 SDVGFVEAYNNCTGGQEVRDLLCVQSFNGIKVLPPVLSESQISGYTAGATAAAMFPPWTA 853 Query 889 GAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKL 948 AG +PF++ + YR NG+GVT NVL ENQK+IA+ FN+A+G IQ+ +T SALGK+ Sbjct 854 AAG----VPFSLNVQYRINGLGVTMNVLSENQKMIASAFNNALGAIQEGFDATNSALGKI 909 Query 949 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYV 1008 Q VVN NA+ALN L+ QLS+ FGAIS+ L +IL+RLD VEA+ QIDRLI GRL +L Y+ Sbjct 910 QSVVNANAEALNNLLNQLSNRFGAISASLQEILTRLDAVEAKAQIDRLINGRLTALNAYI 969 Query 1009 TQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYV 1068 ++QL + I+ SA A K++ECV Q+ R++FCG G H++S Q+AP+G+ F+H +YV Sbjct 970 SKQLSDSTLIKFSAAQAIEKVNECVKSQTTRINFCGNGNHILSLVQNAPYGLCFIHFSYV 1029 Query 1069 PAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCD 1127 P K +P +C G + P+ G FV + W T N+Y P+ IT N+ +C Sbjct 1030 PTSFKTANVSPGLCISGDRGLAPKAGYFVQDNGEWKFTGSNYYYPEPITDKNSVAMISCA 1089 Query 1128 VVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTS--PDVDLGDISGINASVVNIQKEIDR 1185 V + P L FKEELDK+FKN TS PD+ L D +N + +++ E++R Sbjct 1090 VNYTKAPEVFLNNSIPNLPDFKEELDKWFKNQTSIAPDLSL-DFEKLNVTFLDLTYEMNR 1148 Query 1186 LNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLK 1245 + + K LNES I+L+E+G YE Y+KWPWY+WL + GL + + ++ Sbjct 1149 IQDAIKKLNESYINLKEVGTYEMYVKWPWYVWL--LIGLAGVAVCVLLFFICCCTGCGSC 1206 Query 1246 GCCSCGSCC-KFDEDDSEPVLKGVKLH 1271 CGSCC ++ V+ + H Sbjct 1207 CFRKCGSCCDEYGGHQDSIVIHNISAH 1233 >sp|A3EX94|SPIKE_BCHK4 Spike glycoprotein OS=Bat coronavirus HKU4 OX=694007 GN=S PE=1 SV=1 Length=1352 Score = 499 bits (1284), Expect = 6e-153, Method: Compositional matrix adjust. Identities = 307/754 (41%), Positives = 430/754 (57%), Gaps = 37/754 (5%) Query 537 KCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVS 596 KCV+++ G+TG GV + Q+F D D + PC VS Sbjct 607 KCVDYSLYGVTGRGVFQNCTAVGVKQQRFVYDSFDNLVGYYSDDG-NYYCVRPCVSVPVS 665 Query 597 VITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNV-FQTRAGCLIGAEH 655 VI ++N A L+ V C V + + SN+ QT GC+IG Sbjct 666 VIY--DKSTNLHATLFGSVACEHVTTMMSQFSRLTQSNLRRRDSNIPLQTAVGCVIGLS- 722 Query 656 VNNSY---ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSI 712 NNS +C +P+G +CA T A S +++ YT + + S + Sbjct 723 -NNSLVVSDCKLPLGQSLCAVPPVSTFRSYSA-SQFQLAVLNYTSPI-VVTPINSSGFTA 779 Query 713 AIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAV 772 AIPTNF+ SVT E + S+ K +VDC Y+C T C LL++YG FC+++N+AL G + Sbjct 780 AIPTNFSFSVTQEYIETSIQKVTVDCKQYVCNGFTRCEKLLVEYGQFCSKINQALHGANL 839 Query 773 EQDKNTQEVFAQVKQIY-KTPPIKDFGGFNFSQILPDP----SKPSKRSFIEDLLFNKVT 827 QD++ +++ +K +T G FN + +L P S S RS IEDLLF+KVT Sbjct 840 RQDESVYSLYSNIKTTSTQTLEYGLNGDFNLT-LLQVPQIGGSSSSYRSAIEDLLFDKVT 898 Query 828 LADAGFIKQYGDCL--GDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSG 885 +AD G+++ Y DC+ G +ARDLICAQ +G VLPPL M A YTS+LL +G Sbjct 899 IADPGYMQGYDDCMKQGPQSARDLICAQYVSGYKVLPPLYDPNMEAAYTSSLLGSIAGAG 958 Query 886 WTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASAL 945 WT G + IPFA M YR NG+G+TQ VL ENQKLIAN+FN A+G +Q +++ A Sbjct 959 WTAGLSSFAAIPFAQSMFYRLNGVGITQQVLSENQKLIANKFNQALGAMQTGFTTSNLAF 1018 Query 946 GKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQ 1005 K+QD VN NAQAL+ L +LS+ FGAISS ++DIL+RLD VE + QIDRLI GRL SL Sbjct 1019 SKVQDAVNANAQALSKLASELSNTFGAISSSISDILARLDTVEQDAQIDRLINGRLISLN 1078 Query 1006 TYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHV 1065 +V+QQL+R+ SA LA+ K++ECV QSKR FCG G H++SF +AP+G F HV Sbjct 1079 AFVSQQLVRSETAARSAQLASDKVNECVKSQSKRNGFCGSGTHIVSFVVNAPNGFYFFHV 1138 Query 1066 TYVPAQEKNFTTAPAICHDGKAHF---PREGVFVSN-------GTHWFVTQRNFYEPQII 1115 YVP N T A +C++ P +G F++N T W+ T +FY+P+ I Sbjct 1139 GYVPTNYTNVTAAYGLCNNNNPPLCIAPIDGYFITNQTTTYSVDTEWYYTGSSFYKPEPI 1198 Query 1116 TTDNT-FVSGNCDVVIGIVNNTVYDPL---QPELDSFKEELDKYFKNHTSPDVDLGDISG 1171 T N+ +VS DV + N + PL ++D FK+EL+++FKN TS + +IS Sbjct 1199 TQANSRYVSS--DVKFDKLENNLPPPLLENSTDVD-FKDELEEFFKNVTSHGPNFAEISK 1255 Query 1172 INASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVT 1231 IN +++++ E+ L EV K LN+S IDL+ELG Y Y KWPWY+WLGFIAGL+A+++ Sbjct 1256 INTTLLDLSDEMAMLQEVVKQLNDSYIDLKELGNYTYYNKWPWYVWLGFIAGLVALLLCV 1315 Query 1232 IMLCCMTSCCSCLKGCCSCGSCC-KFDEDDSEPV 1264 L C T C + G C +CC ++E D E + Sbjct 1316 FFLLCCTGCGTSCLGKMKCKNCCDSYEEYDVEKI 1349 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 62/202 (31%), Positives = 92/202 (46%), Gaps = 15/202 (7%) Query 232 GINITRFQTL---------LALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN 282 G N+ RF TL + RS+ + + W AA+YV L T+LL ++ + Sbjct 280 GGNMFRFATLPVYEGIKYYTVIPRSFRSKANKREAW----AAFYVYKLHQLTYLLDFSVD 335 Query 283 GTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVF 342 G I A+DC D LS+ C+ SF V+ G+Y S++ T + + PN T C F + Sbjct 336 GYIRRAIDCGHDDLSQLHCSYTSFEVDTGVYSVSSYEASATGTFIEQPNATE-CDFSPML 394 Query 343 NATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVI 402 VY + R SNC + + L + + F C G+SP + C++ + D F Sbjct 395 TGVA-PQVYNFKRLVFSNCNYNLTKLLSLFAVDEFSCNGISPDSIARGCYSTLTVDYFAY 453 Query 403 RGDEVRQIAPGQTGKIADYNYK 424 I PG G I YNYK Sbjct 454 PLSMKSYIRPGSAGNIPLYNYK 475 >sp|P25192|SPIKE_CVBLY Spike glycoprotein OS=Bovine coronavirus (strain LY-138) OX=11131 GN=S PE=3 SV=1 Length=1363 Score = 485 bits (1249), Expect = 6e-148, Method: Compositional matrix adjust. Identities = 286/759 (38%), Positives = 418/759 (55%), Gaps = 41/759 (5%) Query 528 KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD 586 K +T+++ CVN++ G+TG G+ E N + +Q D RD T Sbjct 621 KSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFM 680 Query 587 ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTR 646 I C G VS S++ A+L++++ C V + QL P N F + Sbjct 681 IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSY 730 Query 647 AGCLIGAEHVNNS--YECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS 704 GC++ A++ +S CD+ +G+G C Y T+ RR+R + NS Sbjct 731 LGCVVNADNSTSSAVQTCDLTVGSGYCVDYSTK----RRSRRAITTGYRFTNFEPFTVNS 786 Query 705 VAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGS 758 V S I IP+ FTI E + +S K ++DC+ ++CGD C + L++YGS Sbjct 787 VNDSLEPVGGLYEIQIPSEFTIGNMEEFIQISSPKVTIDCSAFVCGDYAACKSQLVEYGS 846 Query 759 FCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN-----FSQIL----PD 808 FC +N LT + D +V + + + + +KD FN FS +L D Sbjct 847 FCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSD 906 Query 809 PSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDE 868 +K S RS IEDLLF+KV L+D GF++ Y +C G RDLIC Q +NG+ VLPPLL++ Sbjct 907 CNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSEN 966 Query 869 MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFN 928 I+ YT A + ++ W+ AG +PF + + YR NGIGVT +VL +NQKLIAN FN Sbjct 967 QISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFN 1022 Query 929 SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVE 988 +A+ IQ+ +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +E Sbjct 1023 NALDAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALE 1082 Query 989 AEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH 1048 A+ QIDRLI GRL +L YV+QQL + ++ SA A K++ECV QS R++FCG G H Sbjct 1083 AQAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNH 1142 Query 1049 LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQR 1107 ++S Q+AP+G+ F+H +YVP + +P +C G + P+ G FV+ W T Sbjct 1143 IISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGS 1202 Query 1108 NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG 1167 +Y P+ IT +N V C V + + + P L FKEELD++FKN TS DL Sbjct 1203 GYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLPDFKEELDQWFKNQTSVAPDLS 1262 Query 1168 DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAI 1227 + IN + +++Q E++RL E K LN+S I+L+++G YE Y+KWPWY+WL + GL + Sbjct 1263 -LDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGLAGV 1319 Query 1228 VMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK 1266 M+ ++ CG CC E V+K Sbjct 1320 AMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQELVIK 1358 Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 5/195 (3%) Query 244 LHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTL 303 L Y+ P +S T Y+V L + +LL +N++G I +AVDC D +SE KC Sbjct 242 LSHYYVMPLTCNSAMTL---EYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKT 298 Query 304 KSFTVEKGIYQTSNFRVQPTESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCV 362 S G+Y+ + + VQP + R PN+ + C N S W RK SNC Sbjct 299 LSIAPSTGVYELNGYTVQPIADVYRRIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCN 357 Query 363 ADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYN 422 + S L + +F C + K+ +CF+++ D F I + G G + +N Sbjct 358 FNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFN 417 Query 423 YKLPDDFTGCVIAWN 437 Y++ T C + +N Sbjct 418 YRIDTTATSCQLYYN 432 >sp|Q9QAQ8|SPIKE_CVBOK Spike glycoprotein OS=Bovine coronavirus (strain OK-0514) OX=231432 GN=S PE=3 SV=1 Length=1363 Score = 485 bits (1249), Expect = 6e-148, Method: Compositional matrix adjust. Identities = 286/759 (38%), Positives = 417/759 (55%), Gaps = 41/759 (5%) Query 528 KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD 586 K +T+++ CVN++ G+TG G+ E N + +Q D RD T Sbjct 621 KSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFM 680 Query 587 ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTR 646 I C G VS S++ A+L++++ C V + QL P N F + Sbjct 681 IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSY 730 Query 647 AGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS 704 GC++ A++ +S CD+ +G+G C Y T+ RR+R + NS Sbjct 731 LGCVVNADNSTSSVVQTCDLTVGSGYCVDYSTK----RRSRRSITTGYRFTNFEPFTVNS 786 Query 705 VAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGS 758 V S I IP+ FTI E + S K ++DC+ ++CGD C + L++YGS Sbjct 787 VNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGS 846 Query 759 FCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN-----FSQIL----PD 808 FC +N LT + D +V + + + + +KD FN FS +L D Sbjct 847 FCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSD 906 Query 809 PSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDE 868 +K S RS IEDLLF+KV L+D GF++ Y +C G RDLIC Q +NG+ VLPPLL++ Sbjct 907 CNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSEN 966 Query 869 MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFN 928 I+ YT A + ++ W+ AG +PF + + YR NGIGVT +VL +NQKLIAN FN Sbjct 967 QISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFN 1022 Query 929 SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVE 988 +A+G IQ+ +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +E Sbjct 1023 NALGAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALE 1082 Query 989 AEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH 1048 A+ QIDRLI GRL +L YV+QQL + ++ SA A K++ECV QS R++FCG G H Sbjct 1083 AQAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNH 1142 Query 1049 LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQR 1107 ++S Q+AP+G+ F+H +YVP + +P +C G + P+ G FV+ W T Sbjct 1143 IISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGS 1202 Query 1108 NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG 1167 +Y P+ IT +N V C V + + + P L FKEELD++FKN TS DL Sbjct 1203 GYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLPDFKEELDQWFKNQTSVAPDL- 1261 Query 1168 DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAI 1227 + IN + +++Q E++RL E K LN+S I+L+++G YE Y+KWPWY+WL + G + Sbjct 1262 SLDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGV 1319 Query 1228 VMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK 1266 M+ ++ CG CC E V+K Sbjct 1320 AMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQELVIK 1358 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 5/195 (3%) Query 244 LHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTL 303 L Y+ P +S T Y+V L + +LL +N++G I +AVDC D +SE KC Sbjct 242 LSHYYVMPLTCNSAMTL---EYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKT 298 Query 304 KSFTVEKGIYQTSNFRVQPTESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCV 362 S G+Y+ + + VQP + R PN+ + C N S W RK SNC Sbjct 299 LSIAPSTGVYELNGYTVQPIADVYRRIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCN 357 Query 363 ADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYN 422 + S L + +F C + K+ +CF+++ D F I + G G + +N Sbjct 358 FNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFN 417 Query 423 YKLPDDFTGCVIAWN 437 Y++ T C + +N Sbjct 418 YRIDTTATSCQLYYN 432 >sp|Q91A26|SPIKE_CVBEN Spike glycoprotein OS=Bovine coronavirus (strain 98TXSF-110-ENT) OX=233262 GN=S PE=3 SV=1 Length=1363 Score = 484 bits (1247), Expect = 1e-147, Method: Compositional matrix adjust. Identities = 286/759 (38%), Positives = 417/759 (55%), Gaps = 41/759 (5%) Query 528 KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD 586 K +T+++ CVN++ G+TG G+ E N + +Q D RD T Sbjct 621 KSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFM 680 Query 587 ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTR 646 I C G VS S++ A+L++++ C V + QL P N F + Sbjct 681 IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSY 730 Query 647 AGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS 704 GC++ A++ +S CD+ +G+G C Y T+ RR+R + NS Sbjct 731 LGCVVNADNSTSSVVQTCDLTVGSGYCVDYSTK----RRSRRSITTGYRFTNFEPFTVNS 786 Query 705 VAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGS 758 V S I IP+ FTI E + S K ++DC+ ++CGD C + L++YGS Sbjct 787 VNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGS 846 Query 759 FCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN-----FSQIL----PD 808 FC +N LT + D +V + + + + +KD FN FS +L D Sbjct 847 FCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSD 906 Query 809 PSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDE 868 +K S RS IEDLLF+KV L+D GF++ Y +C G RDLIC Q +NG+ VLPPLL++ Sbjct 907 CNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSEN 966 Query 869 MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFN 928 I+ YT A + ++ W+ AG +PF + + YR NGIGVT +VL +NQKLIAN FN Sbjct 967 QISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFN 1022 Query 929 SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVE 988 +A+G IQ+ +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +E Sbjct 1023 NALGAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALE 1082 Query 989 AEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH 1048 A+ QIDRLI GRL +L YV+QQL + ++ SA A K++ECV QS R++FCG G H Sbjct 1083 AQAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNH 1142 Query 1049 LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQR 1107 ++S Q+AP+G+ F+H +YVP + +P +C G + P+ G FV+ W T Sbjct 1143 IISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGS 1202 Query 1108 NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG 1167 +Y P+ IT +N V C V + + + P L FKEELD++FKN TS DL Sbjct 1203 GYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLPYFKEELDQWFKNQTSVAPDL- 1261 Query 1168 DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAI 1227 + IN + +++Q E++RL E K LN+S I+L+++G YE Y+KWPWY+WL + G + Sbjct 1262 SLDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGV 1319 Query 1228 VMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK 1266 M+ ++ CG CC E V+K Sbjct 1320 AMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQELVIK 1358 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 5/195 (3%) Query 244 LHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTL 303 L Y+ P +S T Y+V L + +LL +N++G I +AVDC D +SE KC Sbjct 242 LSHYYVMPLTCNSALTL---EYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKT 298 Query 304 KSFTVEKGIYQTSNFRVQPTESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCV 362 S G+Y+ + + VQP + R PN+ + C N S W RK SNC Sbjct 299 LSIAPSTGVYELNGYTVQPIADVYRRIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCN 357 Query 363 ADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYN 422 + S L + +F C + K+ +CF+++ D F I + G G + +N Sbjct 358 FNMSSLMSFIQAYSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFN 417 Query 423 YKLPDDFTGCVIAWN 437 Y++ T C + +N Sbjct 418 YRIDTTATSCQLYYN 432 >sp|Q8V436|SPIKE_CVBLU Spike glycoprotein OS=Bovine coronavirus (strain 98TXSF-110-LUN) OX=233264 GN=S PE=3 SV=1 Length=1363 Score = 484 bits (1247), Expect = 1e-147, Method: Compositional matrix adjust. Identities = 285/759 (38%), Positives = 416/759 (55%), Gaps = 41/759 (5%) Query 528 KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD 586 K +T+++ CVN++ G+TG G+ E N + +Q D RD T Sbjct 621 KSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFM 680 Query 587 ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTR 646 I C G VS S++ A+L++++ C V + QL P N F + Sbjct 681 IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSY 730 Query 647 AGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS 704 GC++ A++ +S CD+ +G+G C Y T+ RR+R + NS Sbjct 731 LGCVVNADNSTSSVVQTCDLTVGSGYCVDYSTK----RRSRRSITTGYRFTNFEPFTVNS 786 Query 705 VAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGS 758 V S I IP+ FTI E + S K ++DC+ ++CGD C + L++YGS Sbjct 787 VNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGS 846 Query 759 FCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN-----FSQIL----PD 808 FC +N LT + D +V + + + + +KD FN FS +L D Sbjct 847 FCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSD 906 Query 809 PSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDE 868 +K S RS IEDLLF+KV L+D GF++ Y +C G RDLIC Q +NG+ VLPPLL++ Sbjct 907 CNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSEN 966 Query 869 MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFN 928 I+ YT A + ++ W+ AG +PF + + YR NGIGVT +VL +NQKLIAN FN Sbjct 967 QISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFN 1022 Query 929 SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVE 988 +A+G IQ+ +T SAL K+Q VVN NA+ LN L++QLS+ FGAISS L +ILSRLD +E Sbjct 1023 NALGAIQEGFDATNSALVKIQAVVNANAETLNNLLQQLSNRFGAISSSLQEILSRLDALE 1082 Query 989 AEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH 1048 A+ QIDRLI GRL +L YV+QQL + ++ SA A K++ECV QS R++FCG G H Sbjct 1083 AQAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNH 1142 Query 1049 LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAIC-HDGKAHFPREGVFVSNGTHWFVTQR 1107 ++S Q+AP+G+ F+H +YVP + +P +C G+ P+ G FV+ W T Sbjct 1143 IISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGGRGIAPKSGYFVNVNNTWMFTGS 1202 Query 1108 NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG 1167 +Y P+ IT +N V C V + + + P L FKEELD++FKN TS DL Sbjct 1203 GYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLPDFKEELDQWFKNQTSVAPDL- 1261 Query 1168 DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAI 1227 + IN + +++Q E++RL E K LN+S I+L+++G YE Y+KWPWY+WL + G + Sbjct 1262 SLDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGV 1319 Query 1228 VMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK 1266 M+ ++ CG CC E V+K Sbjct 1320 AMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQELVIK 1358 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 5/195 (3%) Query 244 LHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTL 303 L Y+ P +S T Y+V L + +LL +N++G I +AVDC D +SE KC Sbjct 242 LSHYYVMPLTCNSALTL---EYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKT 298 Query 304 KSFTVEKGIYQTSNFRVQPTESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCV 362 S G+Y+ + + VQP + R PN+ + C N S W RK SNC Sbjct 299 LSIAPSTGVYELNGYTVQPIADVYRRIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCN 357 Query 363 ADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYN 422 + S L + +F C + K+ +CF+++ D F I + G G + +N Sbjct 358 FNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFN 417 Query 423 YKLPDDFTGCVIAWN 437 Y++ T C + +N Sbjct 418 YRIDTTATSCQLYYN 432 >sp|Q9QAR5|SPIKE_CVBLS Spike glycoprotein OS=Bovine coronavirus (strain LSU-94LSS-051) OX=233261 GN=S PE=3 SV=1 Length=1363 Score = 484 bits (1245), Expect = 2e-147, Method: Compositional matrix adjust. Identities = 286/759 (38%), Positives = 416/759 (55%), Gaps = 41/759 (5%) Query 528 KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD 586 K +T+++ CVN++ G+TG G+ E N + +Q D RD T Sbjct 621 KSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFM 680 Query 587 ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTR 646 I C G VS S++ A+L+++ C V + QL P N F + Sbjct 681 IRSCYSGRVSAAFHAN--SSEPALLFRNFKCNYVFNNTLSRQLQPI--------NYFDSY 730 Query 647 AGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS 704 GC++ A++ +S CD+ +G+G C Y T+ RR+R + NS Sbjct 731 LGCVVNADNSTSSVVQTCDLTVGSGYCVDYSTK----RRSRRSITTGYRFTNFEPFTVNS 786 Query 705 VAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGS 758 V S I IP+ FTI E + S K ++DC+ ++CGD C + L++YGS Sbjct 787 VNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGS 846 Query 759 FCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN-----FSQIL----PD 808 FC +N LT + D +V + + + + +KD FN FS +L D Sbjct 847 FCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSD 906 Query 809 PSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDE 868 +K S RS IEDLLF+KV L+D GF++ Y +C G RDLIC Q +NG+ VLPPLL++ Sbjct 907 CNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSEN 966 Query 869 MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFN 928 I+ YT A + ++ W+ AG +PF + + YR NGIGVT +VL +NQKLIAN FN Sbjct 967 QISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFN 1022 Query 929 SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVE 988 +A+G IQ+ +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +E Sbjct 1023 NALGAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALE 1082 Query 989 AEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH 1048 A+ QIDRLI GRL +L YV+QQL + ++ SA A K++ECV QS R++FCG G H Sbjct 1083 AQAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNH 1142 Query 1049 LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQR 1107 ++S Q+AP+G+ F+H +YVP + +P +C G + P+ G FV+ W T Sbjct 1143 IISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGS 1202 Query 1108 NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG 1167 +Y P+ IT +N V C V + + + P L FKEELD++FKN TS DL Sbjct 1203 GYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLPDFKEELDQWFKNQTSVAPDL- 1261 Query 1168 DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAI 1227 + IN + +++Q E++RL E K LN+S I+L+++G YE Y+KWPWY+WL + G + Sbjct 1262 SLDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGV 1319 Query 1228 VMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK 1266 M+ ++ CG CC E V+K Sbjct 1320 AMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQELVIK 1358 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 5/195 (3%) Query 244 LHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTL 303 L Y+ P +S T Y+V L + +LL +N++G I +AVDC D +SE KC Sbjct 242 LSHYYVMPLTCNSALTL---EYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKT 298 Query 304 KSFTVEKGIYQTSNFRVQPTESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCV 362 S G+Y+ + + VQP + R PN+ + C N S W RK SNC Sbjct 299 LSIAPSTGVYELNGYTVQPIADVYRRIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCN 357 Query 363 ADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYN 422 + S L + +F C + K+ +CF+++ D F I + G G + +N Sbjct 358 FNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFN 417 Query 423 YKLPDDFTGCVIAWN 437 Y++ T C + +N Sbjct 418 YRIDTTATSCQLYYN 432 >sp|P25194|SPIKE_CVBV Spike glycoprotein OS=Bovine coronavirus (strain vaccine) OX=11134 GN=S PE=3 SV=1 Length=1363 Score = 481 bits (1238), Expect = 2e-146, Method: Compositional matrix adjust. Identities = 285/759 (38%), Positives = 415/759 (55%), Gaps = 41/759 (5%) Query 528 KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD 586 K +T+++ CVN++ G+TG G+ E N + +Q D RD T Sbjct 621 KSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFM 680 Query 587 ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTR 646 I C G VS S++ A+L++++ C V + QL P N F + Sbjct 681 IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSY 730 Query 647 AGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS 704 GC++ A++ +S CD+ +G+G C Y T+ RR+R + NS Sbjct 731 LGCVVNADNSTSSVVQTCDLTVGSGYCVDYSTK----RRSRRAITTGYRFTNFEPFTVNS 786 Query 705 VAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGS 758 V S I IP+ FTI E + S K ++DC+ ++CGD C + L++YGS Sbjct 787 VNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGS 846 Query 759 FCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN-----FSQIL----PD 808 FC +N LT + D +V + + + + +KD FN FS +L D Sbjct 847 FCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSD 906 Query 809 PSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDE 868 +K S RS IEDLLF+KV L+D GF++ Y +C G RDLIC Q +NG+ VLPPLL+ Sbjct 907 CNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSVN 966 Query 869 MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFN 928 I+ YT A + ++ W+ AG +PF + + YR NGIGVT +VL +NQKLIAN FN Sbjct 967 QISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFN 1022 Query 929 SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVE 988 +A+ IQ+ +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +E Sbjct 1023 NALDAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALE 1082 Query 989 AEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH 1048 A+ QIDRLI GRL +L YV+QQL + ++ SA A K++ECV QS R++FCG G H Sbjct 1083 AQAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNH 1142 Query 1049 LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQR 1107 ++S Q+AP+G+ F+H +YVP + +P +C G + P+ G FV+ W T Sbjct 1143 IISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGS 1202 Query 1108 NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG 1167 +Y P+ IT +N V C V + + + P L FKEELD++FKN TS DL Sbjct 1203 GYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLHDFKEELDQWFKNQTSVAPDLS 1262 Query 1168 DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAI 1227 + IN + +++Q E++RL E K LN+S I+L+++G YE Y+KWPWY+WL + G + Sbjct 1263 -LDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGV 1319 Query 1228 VMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK 1266 M+ ++ CG CC E V+K Sbjct 1320 AMLVLLFFICCCTGCGTSCFKICGGCCDDYTGHQELVIK 1358 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 52/181 (29%), Positives = 85/181 (47%), Gaps = 2/181 (1%) Query 258 WTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSN 317 ++A Y+V L + +LL +N++G I +AVDC D +SE KC S G+Y+ + Sbjct 253 YSAMTLEYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELNG 312 Query 318 FRVQPTESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFST 376 + VQP + R PN+ + C N S W RK SNC + S L + + Sbjct 313 YTVQPIADVYRRIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQADS 371 Query 377 FKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAW 436 F C + K+ +CF+++ D F I + G G + +NY++ C + + Sbjct 372 FTCNNIEAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTTAASCQLYY 431 Query 437 N 437 N Sbjct 432 N 432 >sp|P25191|SPIKE_CVBL9 Spike glycoprotein OS=Bovine coronavirus (strain L9) OX=11130 GN=S PE=1 SV=1 Length=1363 Score = 479 bits (1232), Expect = 2e-145, Method: Compositional matrix adjust. Identities = 284/759 (37%), Positives = 414/759 (55%), Gaps = 41/759 (5%) Query 528 KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD 586 K +T+++ CVN++ G+TG G+ E N + +Q D RD T Sbjct 621 KSNTDIILGVCVNYDLYGITGQGIFVEVNAPYYNSWQNLLYDSNGNLYGFRDYLTNRTFM 680 Query 587 ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTR 646 I C G VS S++ A+L++++ C V + QL P N F + Sbjct 681 IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSY 730 Query 647 AGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS 704 GC++ A++ +S CD+ +G+G C Y T+ RR+R + NS Sbjct 731 LGCVVNADNSTSSVVQTCDLTVGSGYCVDYSTK----RRSRRAITTGYRFTNFEPFTVNS 786 Query 705 VAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGS 758 V S I IP+ FTI E + S K ++DC+ ++CGD C + L++YGS Sbjct 787 VNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGS 846 Query 759 FCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN-----FSQIL----PD 808 FC +N LT + D +V + + + + +KD FN FS +L D Sbjct 847 FCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSD 906 Query 809 PSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDE 868 +K S RS IEDLLF+KV L+D GF++ Y +C G RDLIC Q +NG+ VLPPLL+ Sbjct 907 CNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSVN 966 Query 869 MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFN 928 I+ YT A + ++ W+ AG +PF + + YR NGIGVT +VL +NQKLIAN FN Sbjct 967 QISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFN 1022 Query 929 SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVE 988 +A+ IQ+ +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +E Sbjct 1023 NALDAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALE 1082 Query 989 AEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH 1048 A+ QIDRLI GRL +L YV+QQL + ++ SA A K++ECV QS R++FCG G H Sbjct 1083 AQAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNH 1142 Query 1049 LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQR 1107 ++S Q+AP+G+ F+H +YVP + +P +C G + P+ G FV+ W T Sbjct 1143 IISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGS 1202 Query 1108 NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG 1167 +Y P+ IT +N V C + + + P L FKEELD++FKN TS DL Sbjct 1203 GYYYPEPITGNNVVVMSTCAANYTKAPDVMLNISTPNLHDFKEELDQWFKNQTSVAPDLS 1262 Query 1168 DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAI 1227 + IN + +++Q E++RL E K LN+S I+L+++G YE Y+KWPWY+WL + G + Sbjct 1263 -LDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGV 1319 Query 1228 VMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK 1266 M+ ++ CG CC E V+K Sbjct 1320 AMLVLLFFICCCTGCGTSCFKICGGCCDDYTGHQELVIK 1358 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 5/195 (3%) Query 244 LHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTL 303 L Y+ P +S T Y+V L + +LL +N++G I +AVDC D +SE KC Sbjct 242 LSHYYVLPLTCNSAMTL---EYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKT 298 Query 304 KSFTVEKGIYQTSNFRVQPTESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCV 362 S G+Y+ + + VQP + R PN+ + C N S W RK SNC Sbjct 299 LSIAPSTGVYELNGYTVQPIADVYRRIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCN 357 Query 363 ADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYN 422 + S L + +F C + K+ +CF+++ D F I + G G + +N Sbjct 358 FNMSCLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFN 417 Query 423 YKLPDDFTGCVIAWN 437 Y++ T C + +N Sbjct 418 YRIDTTATSCQLYYN 432 >sp|P15777|SPIKE_CVBM Spike glycoprotein OS=Bovine coronavirus (strain Mebus) OX=11132 GN=S PE=3 SV=1 Length=1363 Score = 478 bits (1229), Expect = 5e-145, Method: Compositional matrix adjust. Identities = 285/759 (38%), Positives = 416/759 (55%), Gaps = 41/759 (5%) Query 528 KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD 586 K +T+++ CVN++ G+TG G+ E N + +Q D RD T Sbjct 621 KSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFM 680 Query 587 ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTR 646 I C G VS S++ A+L++++ C V + QL P N F + Sbjct 681 IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSY 730 Query 647 AGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS 704 GC++ A++ +S CD+ +G+G C Y T+ RR+R + T NS Sbjct 731 LGCVVNADNSTSSVVQTCDLTVGSGYCVDYSTK----RRSRRAITTGYRFTTFEPFTVNS 786 Query 705 VAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGS 758 V S I IP+ FTI E + S K ++DC+ ++CGD C + L++YGS Sbjct 787 VNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGS 846 Query 759 FCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN-----FSQIL----PD 808 FC +N LT + D +V + + + + +KD FN FS +L D Sbjct 847 FCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSD 906 Query 809 PSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDE 868 +K S RS IEDLLF+KV L+D GF++ Y +C G RDLIC Q +NG+ VLPPLL+ Sbjct 907 CNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSVN 966 Query 869 MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFN 928 I+ YT A + ++ + AA+ +PF + + YR NGIGVT +VL +NQKLIAN FN Sbjct 967 QISGYTLAATSASLFPPLS----AAVGVPFYLNVQYRINGIGVTMDVLSQNQKLIANAFN 1022 Query 929 SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVE 988 +A+ IQ+ +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +E Sbjct 1023 NALDAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALE 1082 Query 989 AEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH 1048 A+ QIDRLI GRL +L YV+QQL + ++ SA A K++ECV QS R++FCG G H Sbjct 1083 AQAQIDRLINGRLTALNVYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNH 1142 Query 1049 LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQR 1107 ++S Q+AP+G+ F+H +YVP + +P +C G + P+ G FV+ W T Sbjct 1143 IISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGS 1202 Query 1108 NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG 1167 +Y P+ IT +N V C V + + + P L FKEELD++FKN TS DL Sbjct 1203 GYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLHDFKEELDQWFKNQTSVAPDLS 1262 Query 1168 DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAI 1227 + IN + +++Q E++RL E K LN+S I+L+++G YE Y+KWPWY+WL + G + Sbjct 1263 -LDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGV 1319 Query 1228 VMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK 1266 M+ ++ CG CC E V+K Sbjct 1320 AMLVLLFFICCCTGCGTSCFKICGGCCDDYTGHQELVIK 1358 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/195 (30%), Positives = 90/195 (46%), Gaps = 5/195 (3%) Query 244 LHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTL 303 L Y+ P SS T Y+V L + +LL +N++G I +AVDC D +SE KC Sbjct 242 LSHYYVLPLTCSSAMTL---EYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKT 298 Query 304 KSFTVEKGIYQTSNFRVQPTESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCV 362 S G+Y+ + + VQP + R PN+ + C N S W RK SNC Sbjct 299 LSIAPSTGVYELNGYTVQPIADVYRRIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCN 357 Query 363 ADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYN 422 + S L + +F C + K+ +CF+++ D F I + G G + +N Sbjct 358 FNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFN 417 Query 423 YKLPDDFTGCVIAWN 437 Y++ T C + +N Sbjct 418 YRIDTTATSCQLYYN 432 >sp|P25190|SPIKE_CVBF Spike glycoprotein OS=Bovine coronavirus (strain F15) OX=11129 GN=S PE=3 SV=1 Length=1363 Score = 477 bits (1228), Expect = 5e-145, Method: Compositional matrix adjust. Identities = 281/762 (37%), Positives = 415/762 (54%), Gaps = 47/762 (6%) Query 528 KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD 586 K +T+++ CVN++ G+TG G+ E+N + +Q D RD T Sbjct 621 KSNTDIILGVCVNYDLYGITGQGIFVEANATYYNSWQNLLYDSNGNLYGFRDYLTNRTFM 680 Query 587 ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTR 646 I C G VS S++ A+L++++ C V + QL P N F + Sbjct 681 IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSY 730 Query 647 AGCLIGAEHVNNS--YECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS 704 GC++ A++ S CD+ +G+G C Y T+ R R++ + Y + + Sbjct 731 LGCVVNADNSTASAVQTCDLTVGSGYCVDYSTKR---RSVRAITT----GYRFTNFEPFT 783 Query 705 VAYSNNS---------IAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQ 755 V N+S I IP+ FTI E + S K ++DC+ ++CGD C + L++ Sbjct 784 VNSVNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDCAACKSQLVE 843 Query 756 YGSFCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFNFSQILPDP----- 809 YGSFC +N LT + D +V + + + + +KD FN I P Sbjct 844 YGSFCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCL 903 Query 810 ----SKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLL 865 +K S RS IEDLLF+KV L+D GF++ Y +C G RDLIC Q +NG+ VLPPLL Sbjct 904 GSECNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLL 963 Query 866 TDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIAN 925 ++ I+ YT A + ++ W+ AG +PF + + YR NGIGVT +VL +NQKLIAN Sbjct 964 SENQISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIAN 1019 Query 926 QFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLD 985 FN+A+ IQ+ +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD Sbjct 1020 AFNNALDAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLD 1079 Query 986 KVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGK 1045 +EA+ QIDRLI GR +L YV+QQL + ++ SA A K++ECV QS R++FCG Sbjct 1080 ALEAQRQIDRLINGRFTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGN 1139 Query 1046 GYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFV 1104 G H++S Q+AP+G+ F+H +YVP + +P +C G + P+ G FV+ W Sbjct 1140 GNHIISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMF 1199 Query 1105 TQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDV 1164 T +Y P+ IT +N V C V + + + P L FKEELD++FKN TS Sbjct 1200 TGSGYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLPDFKEELDQWFKNQTSVAP 1259 Query 1165 DLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGL 1224 DL + IN + +++Q E++RL E K LN+S I+L+++G YE Y+KWPWY+WL + G Sbjct 1260 DLS-LDYINVTFLDLQDEMNRLQEAIKLLNQSYINLKDIGTYEYYVKWPWYVWL--LIGF 1316 Query 1225 IAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK 1266 + M+ ++ CG CC E V+K Sbjct 1317 AGVAMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQELVIK 1358 Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 5/195 (3%) Query 244 LHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTL 303 L Y+ P +S T Y+V L + +LL +N++G I +AVDC D +SE KC Sbjct 242 LSHYYVMPLTCNSAMTL---EYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKT 298 Query 304 KSFTVEKGIYQTSNFRVQPTESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCV 362 S G+Y+ + + VQP + R PN+ + C N S W RK SNC Sbjct 299 LSIAPSTGVYELNGYTVQPIADVYRRIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCN 357 Query 363 ADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYN 422 + S L + +F C + K+ +CF+++ D F I + G G + +N Sbjct 358 FNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFN 417 Query 423 YKLPDDFTGCVIAWN 437 Y++ T C + +N Sbjct 418 YRIDTTATSCQLYYN 432 >sp|P25193|SPIKE_CVBQ Spike glycoprotein OS=Bovine coronavirus (strain Quebec) OX=11133 GN=S PE=3 SV=2 Length=1363 Score = 474 bits (1219), Expect = 1e-143, Method: Compositional matrix adjust. Identities = 282/759 (37%), Positives = 412/759 (54%), Gaps = 41/759 (5%) Query 528 KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD 586 K +T+++ CVN++ G+TG G+ E N + +Q D RD T Sbjct 621 KSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFM 680 Query 587 ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTR 646 I C G VS S++ A+L++++ C V + QL P N F + Sbjct 681 IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSY 730 Query 647 AGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS 704 GC++ A++ +S CD+ +G+G C Y T+ RR+R + NS Sbjct 731 LGCVVNADNSTSSVVQTCDLTVGSGYCVDYSTK----RRSRRAITTGYRFTNFEPFTVNS 786 Query 705 VAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGS 758 V S I IP+ FTI E + S K ++DC+ ++CGD C + L++YGS Sbjct 787 VNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGS 846 Query 759 FCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFNFSQILPDP-------- 809 FC +N LT + D +V + + + + +KD FN I P Sbjct 847 FCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSA 906 Query 810 -SKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDE 868 +K S RS IEDLLF+KV L+D GF++ Y +C G RDLIC Q +NG+ VLPPLL+ Sbjct 907 CNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSVN 966 Query 869 MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFN 928 I+ YT A + ++ + AA+ +PF + + YR NGIGVT +VL +NQKLIAN FN Sbjct 967 QISGYTLAATSASLFPPLS----AAVGVPFYLNVQYRINGIGVTMDVLSQNQKLIANAFN 1022 Query 929 SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVE 988 +A+ IQ+ +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +E Sbjct 1023 NALDAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALE 1082 Query 989 AEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH 1048 A+ QIDRLI GRL +L YV+QQL + ++ SA A K++ECV QS R++FCG G H Sbjct 1083 AQAQIDRLINGRLTALNVYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNH 1142 Query 1049 LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQR 1107 ++S Q+AP+G+ F+H +YVP + +P +C G + P+ G FV+ W T Sbjct 1143 IISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGS 1202 Query 1108 NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG 1167 +Y P+ IT +N V C V + + + P L FKEELD++FKN TS DL Sbjct 1203 GYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLHDFKEELDQWFKNQTSVAPDLS 1262 Query 1168 DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAI 1227 + IN + +++Q E++RL E K LN+S I+L+++G YE Y+KWPWY+WL + G + Sbjct 1263 -LDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGV 1319 Query 1228 VMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK 1266 M+ ++ CG CC E V+K Sbjct 1320 AMLVLLFFICCCTGCGTSCFKICGGCCDDYTGHQELVIK 1358 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/195 (30%), Positives = 90/195 (46%), Gaps = 5/195 (3%) Query 244 LHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTL 303 L Y+ P SS T Y+V L + +LL +N++G I +AVDC D +SE KC Sbjct 242 LSHYYVLPLTCSSAMTL---EYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKT 298 Query 304 KSFTVEKGIYQTSNFRVQPTESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCV 362 S G+Y+ + + VQP + R PN+ + C N S W RK SNC Sbjct 299 LSIAPSTGVYELNGYTVQPIADVYRRIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCN 357 Query 363 ADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYN 422 + S L + +F C + K+ +CF+++ D F I + G G + +N Sbjct 358 FNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFN 417 Query 423 YKLPDDFTGCVIAWN 437 Y++ T C + +N Sbjct 418 YRIDTTATSCQLYYN 432 >sp|Q0ZME7|SPIKE_CVHN5 Spike glycoprotein OS=Human coronavirus HKU1 (isolate N5) OX=443241 GN=S PE=1 SV=1 Length=1351 Score = 467 bits (1201), Expect = 3e-141, Method: Compositional matrix adjust. Identities = 275/750 (37%), Positives = 410/750 (55%), Gaps = 56/750 (7%) Query 530 STNLVKNKCVNFNFNGLTGTGVLTESNKKFLP-FQQFGRDIADTTDAVRDPQTLEILDIT 588 +T + CVN++ G+TG G+ E + + +Q D +D T + I Sbjct 611 NTEISTGVCVNYDLYGITGQGIFKEVSAAYYNNWQNLLYDSNGNIIGFKDFLTNKTYTIL 670 Query 589 PCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAG 648 PC G VS S+ A+LY+++ C+ V I + + F + G Sbjct 671 PCYSGRVSA--AFYQNSSSPALLYRNLKCSYVLNNIS----------FISQPFYFDSYLG 718 Query 649 CLIGAEHVNNSYE---CDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSV 705 C++ A ++ SY CD+ +G+G C Y + S R+ R ++S Y +V Sbjct 719 CVLNAVNLT-SYSVSSCDLRMGSGFCIDYALPS-SRRKRRGISS----PYRFVTFEPFNV 772 Query 706 AYSNNS---------IAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQY 756 ++ N+S I IPTNFTI+ E + S K ++DC+ ++C + C +LL +Y Sbjct 773 SFVNDSVETVGGLFEIQIPTNFTIAGHEEFIQTSSPKVTIDCSAFVCSNYAACHDLLSEY 832 Query 757 GSFCTQLNRALTGIAVEQDKNTQEVFAQVKQ------IYKTPPIKDFGGFNFSQILP--- 807 G+FC +N L + D +V + Q T D +F +L Sbjct 833 GTFCDNINSILNEVNDLLDITQLQVANALMQGVTLSSNLNTNLHSDVDNIDFKSLLGCLG 892 Query 808 DPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTD 867 S RS +EDLLFNKV L+D GF++ Y +C G RDL+C Q FNG+ VLPP+L++ Sbjct 893 SQCGSSSRSLLEDLLFNKVKLSDVGFVEAYNNCTGGSEIRDLLCVQSFNGIKVLPPILSE 952 Query 868 EMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQF 927 I+ YT+A + W+ AG +PF++ + YR NG+GVT +VL +NQKLIAN F Sbjct 953 TQISGYTTAATVAAMFPPWSAAAG----VPFSLNVQYRINGLGVTMDVLNKNQKLIANAF 1008 Query 928 NSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKV 987 N A+ IQ+ ++T SAL K+Q VVN NAQALN+L++QL + FGAISS L +ILSRLD + Sbjct 1009 NKALLSIQNGFTATNSALAKIQSVVNANAQALNSLLQQLFNKFGAISSSLQEILSRLDNL 1068 Query 988 EAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGY 1047 EA+VQIDRLI GRL +L YV+QQL I+A A+ A K++ECV QS R++FCG G Sbjct 1069 EAQVQIDRLINGRLTALNAYVSQQLSDITLIKAGASRAIEKVNECVKSQSPRINFCGNGN 1128 Query 1048 HLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQ 1106 H++S Q+AP+G++F+H +Y P K +P +C G + P++G F+ W T Sbjct 1129 HILSLVQNAPYGLLFIHFSYKPTSFKTVLVSPGLCLSGDRGIAPKQGYFIKQNDSWMFTG 1188 Query 1107 RNFYEPQIITTDNTFVSGNCDVVIG-----IVNNTVYDPLQPELDSFKEELDKYFKNHTS 1161 ++Y P+ I+ N +C V +NN++ P L F+ EL +FKNHTS Sbjct 1189 SSYYYPEPISDKNVVFMNSCSVNFTKAPFIYLNNSI-----PNLSDFEAELSLWFKNHTS 1243 Query 1162 PDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFI 1221 +L S INA+ +++ E++ + E K+LN S I+L+E+G YE Y+KWPWYIWL + Sbjct 1244 IAPNLTFNSHINATFLDLYYEMNVIQESIKSLNSSFINLKEIGTYEMYVKWPWYIWLLIV 1303 Query 1222 AGLIAIVMVTIMLCCMTSCCS-CLKGCCSC 1250 I +M+ +CC T C S C C +C Sbjct 1304 ILFIIFLMILFFICCCTGCGSACFSKCHNC 1333 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 81/169 (48%), Gaps = 2/169 (1%) Query 265 YYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTE 324 Y+V L R +LL ++E+G IT+AVDC+ LSE +C +SF G+Y S F V+P Sbjct 256 YWVTPLSRRQYLLNFDEHGVITNAVDCSSSFLSEIQCKTQSFAPNTGVYDLSGFTVKPVA 315 Query 325 SIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVS 383 ++ R PN+ + C N S W R+ SNC + S L +F C + Sbjct 316 TVYRRIPNLPD-CDIDNWLNNVSVPSPLNWERRIFSNCNFNLSTLLRLVHVDSFSCNNLD 374 Query 384 PTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGC 432 +K+ CF ++ D F I + G +G + NYK+ + C Sbjct 375 KSKIFGSCFNSITVDKFAIPNRRRDDLQLGSSGFLQSSNYKIDISSSSC 423 >sp|Q14EB0|SPIKE_CVHN2 Spike glycoprotein OS=Human coronavirus HKU1 (isolate N2) OX=443240 GN=S PE=3 SV=1 Length=1351 Score = 466 bits (1198), Expect = 9e-141, Method: Compositional matrix adjust. Identities = 273/742 (37%), Positives = 406/742 (55%), Gaps = 56/742 (8%) Query 538 CVNFNFNGLTGTGVLTESNKKFLP-FQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVS 596 CVN++ G+TG G+ E + + +Q D +D T + I PC G VS Sbjct 619 CVNYDLYGITGQGIFKEVSAAYYNNWQNLLYDSNGNIIGFKDFLTNKTYTILPCYSGRVS 678 Query 597 VITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHV 656 S+ A+LY+++ C+ V I + + F + GC++ A ++ Sbjct 679 A--AFYQNSSSPALLYRNLKCSYVLNNIS----------FISQPFYFDSYLGCVLNAVNL 726 Query 657 NNSYE---CDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNS-- 711 SY CD+ +G+G C Y + S R+ R ++S Y +V++ N+S Sbjct 727 T-SYSVSSCDLRMGSGFCIDYALPS-SRRKRRGISS----PYRFVTFEPFNVSFVNDSVE 780 Query 712 -------IAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLN 764 I IPTNFTI+ E + S K ++DC+ ++C + C +LL +YG+FC +N Sbjct 781 TVGGLFEIQIPTNFTIAGHEEFIQTSSPKVTIDCSAFVCSNYAACHDLLSEYGTFCDNIN 840 Query 765 RALTGIAVEQDKNTQEVFAQVKQ------IYKTPPIKDFGGFNFSQILP---DPSKPSKR 815 L + D +V + Q T D +F +L S R Sbjct 841 SILNEVNDLLDITQLQVANALMQGVTLSSNLNTNLHSDVDNIDFKSLLGCLGSQCGSSSR 900 Query 816 SFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTS 875 S +EDLLFNKV L+D GF++ Y +C G RDL+C Q FNG+ VLPP+L++ I+ YT+ Sbjct 901 SLLEDLLFNKVKLSDVGFVEAYNNCTGGSEIRDLLCVQSFNGIKVLPPILSETQISGYTT 960 Query 876 ALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQ 935 A + W+ AG +PF++ + YR NG+GVT +VL +NQKLIAN FN A+ IQ Sbjct 961 AATVAAMFPPWSAAAG----VPFSLNVQYRINGLGVTMDVLNKNQKLIANAFNKALLSIQ 1016 Query 936 DSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDR 995 + ++T SAL K+Q VVN NAQALN+L++QL + FGAISS L +ILSRLD +EA+VQIDR Sbjct 1017 NGFTATNSALAKIQSVVNANAQALNSLLQQLFNKFGAISSSLQEILSRLDNLEAQVQIDR 1076 Query 996 LITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQS 1055 LI GRL +L YV+QQL I+A A+ A K++ECV QS R++FCG G H++S Q+ Sbjct 1077 LINGRLTALNAYVSQQLSDITLIKAGASRAIEKVNECVKSQSPRINFCGNGNHILSLVQN 1136 Query 1056 APHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQRNFYEPQI 1114 AP+G++F+H +Y P K +P +C G + P++G F+ W T ++Y P+ Sbjct 1137 APYGLLFIHFSYKPTSFKTVLVSPGLCLSGDRGIAPKQGYFIKQNDSWMFTGSSYYYPEP 1196 Query 1115 ITTDNTFVSGNCDVVIG-----IVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDI 1169 I+ N +C V +NN++ P L F+ E +FKNHTS +L Sbjct 1197 ISDKNVVFMNSCSVNFTKAPFIYLNNSI-----PNLSDFEAEFSLWFKNHTSIAPNLTFN 1251 Query 1170 SGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVM 1229 S INA+ +++ E++ + E K+LN S I+L+E+G YE Y+KWPWYIWL + I +M Sbjct 1252 SHINATFLDLYYEMNVIQESIKSLNSSFINLKEIGTYEMYVKWPWYIWLLIVILFIIFLM 1311 Query 1230 VTIMLCCMTSCCS-CLKGCCSC 1250 + +CC T C S C C +C Sbjct 1312 ILFFICCCTGCGSACFSKCHNC 1333 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 81/169 (48%), Gaps = 2/169 (1%) Query 265 YYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTE 324 Y+V L R +LL ++E+G IT+AVDC+ LSE +C +SF G+Y S F V+P Sbjct 256 YWVTPLSRRQYLLNFDEHGVITNAVDCSSSFLSEIQCKTQSFAPNTGVYDLSGFTVKPVA 315 Query 325 SIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVS 383 ++ R PN+ + C N S W R+ SNC + S L +F C + Sbjct 316 TVYRRIPNLPD-CDIDNWLNNVSVPSPLNWERRIFSNCNFNLSTLLRLVHVDSFSCNNLD 374 Query 384 PTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGC 432 +K+ CF ++ D F I + G +G + NYK+ + C Sbjct 375 KSKIFGSCFNSITVDKFAIPNRRRDDLQLGSSGFLQSSNYKIDISSSSC 423 >sp|P36334|SPIKE_CVHOC Spike glycoprotein OS=Human coronavirus OC43 OX=31631 GN=S PE=1 SV=1 Length=1353 Score = 464 bits (1195), Expect = 2e-140, Method: Compositional matrix adjust. Identities = 285/760 (38%), Positives = 410/760 (54%), Gaps = 43/760 (6%) Query 528 KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD 586 K +T+++ CVN++ G+ G G+ E N + +Q D RD Sbjct 611 KANTDIILGVCVNYDLYGILGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYIINRTFM 670 Query 587 ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTR 646 I C G VS S++ A+L++++ C V QL P N F + Sbjct 671 IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNSLTRQLQPI--------NYFDSY 720 Query 647 AGCLIGAEHVN--NSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS 704 GC++ A + + CD+ +G+G C Y RR+R + NS Sbjct 721 LGCVVNAYNSTAISVQTCDLTVGSGYCVDYSKN----RRSRGAITTGYRFTNFEPFTVNS 776 Query 705 VAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGS 758 V S I IP+ FTI E + S K ++DC ++CGD C + L++YGS Sbjct 777 VNDSLEPVGGLYEIQIPSEFTIGNMVEFIQTSSPKVTIDCAAFVCGDYAACKSQLVEYGS 836 Query 759 FCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFNFSQILPDP-------- 809 FC +N LT + D +V + + + + +KD FN I P Sbjct 837 FCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSE 896 Query 810 -SKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDE 868 SK S RS IEDLLF+KV L+D GF++ Y +C G RDLIC Q + G+ VLPPLL++ Sbjct 897 CSKASSRSAIEDLLFDKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYKGIKVLPPLLSEN 956 Query 869 MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFN 928 I+ YT A + ++ WT AG +PF + + YR NG+GVT +VL +NQKLIAN FN Sbjct 957 QISGYTLAATSASLFPPWTAAAG----VPFYLNVQYRINGLGVTMDVLSQNQKLIANAFN 1012 Query 929 SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVE 988 +A+ IQ+ +T SAL K+Q VVN NA+ALN L++QLS+ FGAIS+ L +ILSRLD +E Sbjct 1013 NALYAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISASLQEILSRLDALE 1072 Query 989 AEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH 1048 AE QIDRLI GRL +L YV+QQL + ++ SA A K++ECV QS R++FCG G H Sbjct 1073 AEAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNH 1132 Query 1049 LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQR 1107 ++S Q+AP+G+ F+H +YVP + +P +C G + P+ G FV+ W T Sbjct 1133 IISLVQNAPYGLYFIHFSYVPTKYVTARVSPGLCIAGDRGIAPKSGYFVNVNNTWMYTGS 1192 Query 1108 NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG 1167 +Y P+ IT +N V C V + + P L FKEELD++FKN TS DL Sbjct 1193 GYYYPEPITENNVVVMSTCAVNYTKAPYVMLNTSIPNLPDFKEELDQWFKNQTSVAPDLS 1252 Query 1168 DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGF-IAGLIA 1226 + IN + +++Q E++RL E K LN+S I+L+++G YE Y+KWPWY+WL +AG+ Sbjct 1253 -LDYINVTFLDLQVEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWLLICLAGVAM 1311 Query 1227 IVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK 1266 +V++ + CC SC K CG CC E V+K Sbjct 1312 LVLLFFICCCTGCGTSCFK---KCGGCCDDYTGYQELVIK 1348 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/197 (30%), Positives = 92/197 (47%), Gaps = 5/197 (3%) Query 242 LALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKC 301 +AL Y+ P +S T Y+V L R +LL +N++G I +A DC D +SE KC Sbjct 244 MALSHYYVMPLTCNSKLTL---EYWVTPLTSRQYLLAFNQDGIIFNAEDCMSDFMSEIKC 300 Query 302 TLKSFTVEKGIYQTSNFRVQPTESIVRF-PNITNLCPFGEVFNATRFASVYAWNRKRISN 360 +S G+Y+ + + VQP + R PN+ N C N S W RK SN Sbjct 301 KTQSIAPPTGVYELNGYTVQPIADVYRRKPNLPN-CNIEAWLNDKSVPSPLNWERKTFSN 359 Query 361 CVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIAD 420 C + S L + +F C + K+ +CF+++ D F I + G G + Sbjct 360 CNFNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQS 419 Query 421 YNYKLPDDFTGCVIAWN 437 +NY++ T C + +N Sbjct 420 FNYRIDTTATSCQLYYN 436 >sp|P11224|SPIKE_CVMA5 Spike glycoprotein OS=Murine coronavirus (strain A59) OX=11142 GN=S PE=1 SV=2 Length=1324 Score = 459 bits (1182), Expect = 9e-139, Method: Compositional matrix adjust. Identities = 277/760 (36%), Positives = 414/760 (54%), Gaps = 62/760 (8%) Query 530 STNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILDIT 588 +T +V CV ++ G+TG GV E + +Q D+ + RD T + I Sbjct 572 NTEVVTGICVKYDLYGITGQGVFKEVKADYYNSWQTLLYDVNGNLNGFRDLTTNKTYTIR 631 Query 589 PCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAG 648 C G VS + + A+LY+++NC+ V + + P N F + G Sbjct 632 SCYSGRVSAAF--HKDAPEPALLYRNINCSYVFSNNISREENPL--------NYFDSYLG 681 Query 649 CLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVA 706 C++ A++ + CD+ +GAG+C Y + S R RSV++ Y ++ + Sbjct 682 CVVNADNRTDEALPNCDLRMGAGLCVDY---SKSRRAHRSVST----GYRLTTFEPYTPM 734 Query 707 YSNNSIA---------IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYG 757 N+S+ IPTNFTI E + K ++DC ++CGD+T C L++YG Sbjct 735 LVNDSVQSVDGLYEMQIPTNFTIGHHEEFIQTRSPKVTIDCAAFVCGDNTACRQQLVEYG 794 Query 758 SFCTQLNRALTGIAVEQDKNTQEVFAQVKQ----IYKTP-----PIKDFGGFNFSQILP- 807 SFC +N L + D +V + + Q + P PI D NFS +L Sbjct 795 SFCVNVNAILNEVNNLLDNMQLQVASALMQGVTISSRLPDGISGPIDDI---NFSPLLGC 851 Query 808 ----------DPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNG 857 PS RS IEDLLF+KV L+D GF++ Y +C G RDL+C Q FNG Sbjct 852 IGSTCAEDGNGPSAIRGRSAIEDLLFDKVKLSDVGFVEAYNNCTGGQEVRDLLCVQSFNG 911 Query 858 LTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLY 917 + VLPP+L++ I+ YT+ A + W+ AG +PF++ + YR NG+GVT NVL Sbjct 912 IKVLPPVLSESQISGYTTGATAAAMFPPWSAAAG----VPFSLSVQYRINGLGVTMNVLS 967 Query 918 ENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVL 977 ENQK+IA+ FN+A+G IQD +T SALGK+Q VVN NA+ALN L+ QLS+ FGAIS+ L Sbjct 968 ENQKMIASAFNNALGAIQDGFDATNSALGKIQSVVNANAEALNNLLNQLSNRFGAISASL 1027 Query 978 NDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQS 1037 +IL+RL+ VEA+ QIDRLI GRL +L Y+++QL + I+ SA A K++ECV Q+ Sbjct 1028 QEILTRLEAVEAKAQIDRLINGRLTALNAYISKQLSDSTLIKVSAAQAIEKVNECVKSQT 1087 Query 1038 KRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFV 1096 R++FCG G H++S Q+AP+G+ F+H +YVP +P +C G + P+ G FV Sbjct 1088 TRINFCGNGNHILSLVQNAPYGLYFIHFSYVPISFTTANVSPGLCISGDRGLAPKAGYFV 1147 Query 1097 SNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYF 1156 + W T ++Y P+ IT N+ + +C V + P FKEELDK+F Sbjct 1148 QDDGEWKFTGSSYYYPEPITDKNSVIMSSCAVNYTKAPEVFLNTSIPNPPDFKEELDKWF 1207 Query 1157 KNHTS--PDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPW 1214 KN TS PD+ L D +N +++++ E++R+ + K LNES I+L+E+G YE Y+KWPW Sbjct 1208 KNQTSIAPDLSL-DFEKLNVTLLDLTYEMNRIQDAIKKLNESYINLKEVGTYEMYVKWPW 1266 Query 1215 YIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCC 1254 Y+WL + GL + + ++ CG+CC Sbjct 1267 YVWL--LIGLAGVAVCVLLFFICCCTGCGSCCFKKCGNCC 1304 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 56/183 (31%), Positives = 80/183 (44%), Gaps = 7/183 (4%) Query 259 TAG---AAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQT 315 TAG A Y+V L R +L +N+ G IT AVDCA SE KC +S G+Y+ Sbjct 249 TAGSTFAPRYWVTPLVKRQYLFNFNQKGVITSAVDCASSYTSEIKCKTQSMLPSTGVYEL 308 Query 316 SNFRVQPTESIVRFPNITNL--CPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSAS 373 S + VQP + R + NL C E A S W RK NC + S L Sbjct 309 SGYTVQPVGVVYR--RVANLPACNIEEWLTARSVPSPLNWERKTFQNCNFNLSSLLRYVQ 366 Query 374 FSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCV 433 + C + +K+ CF ++ D F + + G +G + NYK+ T C Sbjct 367 AESLFCNNIDASKVYGRCFGSISVDKFAVPRSRQVDLQLGNSGFLQTANYKIDTAATSCQ 426 Query 434 IAW 436 + + Sbjct 427 LHY 429 >sp|Q8JSP8|SPIKE_CVPIA Spike glycoprotein OS=Porcine hemagglutinating encephalomyelitis virus (strain IAF-404) OX=230236 GN=S PE=3 SV=1 Length=1349 Score = 459 bits (1181), Expect = 2e-138, Method: Compositional matrix adjust. Identities = 277/753 (37%), Positives = 411/753 (55%), Gaps = 58/753 (8%) Query 528 KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD 586 + +TN+ + CVN++ G+TG G+L E N + +Q D + RD + Sbjct 607 QGNTNITTDVCVNYDLYGITGQGILIEVNATYYNSWQNLLYDSSGNLYGFRDYLSNRTFL 666 Query 587 ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEV--PVAIHADQLTPTWRVYSTGSNVFQ 644 I C G VS + S++ A++++++ C+ V + QL N F Sbjct 667 IRSCYSGRVSAVFHAN--SSEPALMFRNLKCSHVFNYTILRQIQLV----------NYFD 714 Query 645 TRAGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAE 702 + GC++ A + S CD+ +G+G C Y T S R ++T Sbjct 715 SYLGCVVNAYNNTASAVSTCDLTVGSGYCVDYVTALRSRR-----------SFTTGYRFT 763 Query 703 NSVAYSNN-------------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTEC 749 N ++ N I IP+ FTI E + S K ++DC ++CGD C Sbjct 764 NFEPFAANLVNDSIEPVGGLYEIQIPSEFTIGNLEEFIQTSSPKVTIDCATFVCGDYAAC 823 Query 750 SNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN-----FS 803 L +YGSFC +N L + D +V + + + + IKD FN FS Sbjct 824 RQQLAEYGSFCENINAILIEVNELLDTTQLQVANSLMNGVTLSTKIKDGINFNVDDINFS 883 Query 804 QIL----PDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLT 859 +L + ++ S RS IEDLLF+KV L+D GF++ Y +C G RDLIC Q +NG+ Sbjct 884 SVLGCLGSECNRASTRSAIEDLLFDKVKLSDVGFVQAYNNCTGGAEIRDLICVQSYNGIK 943 Query 860 VLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYEN 919 VLPPLL++ I+ YTSA A ++ WT AG +PF + + YR NG+GVT +VL +N Sbjct 944 VLPPLLSENQISGYTSAATAASLFPPWTAAAG----VPFYLNVQYRINGLGVTMDVLSQN 999 Query 920 QKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLND 979 QKLIA+ FN+A+ IQ+ +T SAL K+Q VVN NA+ALN L++QLS+ FGAIS+ L + Sbjct 1000 QKLIASAFNNALDSIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISASLQE 1059 Query 980 ILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKR 1039 ILSRLD +EA+ QIDRLI GRL +L YV+QQL + ++ SA A K++ECV QS R Sbjct 1060 ILSRLDALEAKAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAIEKVNECVKSQSSR 1119 Query 1040 VDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHF-PREGVFVSN 1098 ++FCG G H++S Q+AP+G+ F+H +YVP + +P +C G P+ G F++ Sbjct 1120 INFCGNGNHIISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDIGISPKSGYFINV 1179 Query 1099 GTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKN 1158 W T +Y P+ IT +N V C V + + + P L FKEEL ++FKN Sbjct 1180 NNSWMFTGSGYYYPEPITQNNVVVMSTCAVNYTKAPDLMLNTSTPNLPDFKEELYQWFKN 1239 Query 1159 HTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWL 1218 +S DL IN + +++Q E++RL E K LN S I+L+++G YE Y+KWPWY+WL Sbjct 1240 QSSLAPDL-SFDYINVTFLDLQDEMNRLQEAIKVLNHSYINLKDIGTYEYYVKWPWYVWL 1298 Query 1219 GF-IAGLIAIVMVTIMLCCMTSCCSCLKGCCSC 1250 +AG++ +V++ + CC SC K C C Sbjct 1299 LICLAGVVMLVLLFFICCCTGCGTSCFKKCGGC 1331 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 52/175 (30%), Positives = 87/175 (50%), Gaps = 2/175 (1%) Query 259 TAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNF 318 +A + Y+V L R FLL ++++G + AVDCA D +SE C S T G+Y+ + + Sbjct 254 SALSLEYWVTPLTTRQFLLAFDQDGVLYHAVDCASDFMSEIMCKTSSITPPTGVYELNGY 313 Query 319 RVQPTESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTF 377 VQP ++ R P++ N C N+ +S W RK SNC + L + +F Sbjct 314 TVQPVATVYRRIPDLPN-CDIEAWLNSKTVSSPLNWERKIFSNCNFNMGRLMSFIQADSF 372 Query 378 KCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGC 432 C + ++L +CF ++ D F I + G++G + +NYK+ + C Sbjct 373 GCNNIDASRLYGMCFGSITIDKFAIPNSRKVDLQVGKSGYLQSFNYKIDTAVSSC 427 >sp|Q8BB25|SPIKE_CVP67 Spike glycoprotein OS=Porcine hemagglutinating encephalomyelitis virus (strain 67N) OX=230237 GN=S PE=3 SV=1 Length=1349 Score = 459 bits (1180), Expect = 2e-138, Method: Compositional matrix adjust. Identities = 274/768 (36%), Positives = 408/768 (53%), Gaps = 59/768 (8%) Query 528 KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD 586 + +T + + CVN++ G+TG G+L E N + +Q D + RD + Sbjct 607 QGNTIITTDVCVNYDLYGITGQGILIEVNATYYNSWQNLLYDSSGNLYGFRDYLSNRTFL 666 Query 587 ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEV--PVAIHADQLTPTWRVYSTGSNVFQ 644 I C G VS + S++ A++++++ C+ V + QL N F Sbjct 667 IRSCYSGRVSAVFHAN--SSEPALMFRNLKCSHVFNNTILRQIQLV----------NYFD 714 Query 645 TRAGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAE 702 + GC++ A + S CD+ +G+G C Y T S R ++T Sbjct 715 SYLGCVVNAYNNTASAVSTCDLTVGSGYCVDYVTALRSRR-----------SFTTGYRFT 763 Query 703 NSVAYSNN-------------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTEC 749 N ++ N I IP+ FTI E + K ++DC ++CGD C Sbjct 764 NFEPFAANLVNDSIEPVGGLYEIQIPSEFTIGNLEEFIQTRSPKVTIDCATFVCGDYAAC 823 Query 750 SNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFNFSQILPD 808 L +YGSFC +N LT + D +V + + + + IKD FN I Sbjct 824 RQQLAEYGSFCENINAILTEVNELLDTTQLQVANSLMNGVTLSTKIKDGINFNVDDINFS 883 Query 809 P---------SKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLT 859 P ++ S RS IEDLLF+KV L+D GF++ Y +C G RDLIC Q +NG+ Sbjct 884 PVLGCLGSECNRASTRSAIEDLLFDKVKLSDVGFVQAYNNCTGGAEIRDLICVQSYNGIK 943 Query 860 VLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYEN 919 VLPPLL++ I+ YT A A ++ WT AG +PF + + YR NG+GVT +VL +N Sbjct 944 VLPPLLSENQISGYTLAATAASLFPPWTAAAG----VPFYLNVQYRINGLGVTMDVLSQN 999 Query 920 QKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLND 979 QKLIA+ FN+A+ IQ+ +T SAL K+Q VVN NA+ALN L++QLS+ FGAIS+ L + Sbjct 1000 QKLIASAFNNALDAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISASLQE 1059 Query 980 ILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKR 1039 ILSRLD +EA+ QIDRLI GRL +L YV+QQL + ++ SA A K++ECV QS R Sbjct 1060 ILSRLDALEAKAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAIEKVNECVKSQSSR 1119 Query 1040 VDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHF-PREGVFVSN 1098 ++FCG G H++S Q+AP+G+ F+H +YVP + +P +C G P+ G F++ Sbjct 1120 INFCGNGNHIISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDIGISPKSGYFINV 1179 Query 1099 GTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKN 1158 W T ++Y P+ IT +N V C V + + + P L FKEEL ++FKN Sbjct 1180 NNSWMFTGSSYYYPEPITQNNVVVMSTCAVNYTKAPDLMLNTSTPNLPDFKEELYQWFKN 1239 Query 1159 HTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWL 1218 +S DL + IN + +++Q E++RL E K LN+S I+L+++G YE Y+KWPWY+WL Sbjct 1240 QSSVAPDL-SLDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL 1298 Query 1219 GFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK 1266 + GL + M+ ++ CG CC E V+K Sbjct 1299 --LIGLAGVAMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQEFVIK 1344 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 108/450 (24%), Positives = 178/450 (40%), Gaps = 80/450 (18%) Query 8 LPLVSSQCVNLT----TRTQLPPAYTNS-FTRGVYYP--DKVFRSSVLHSTQDLFLPFFS 60 +P +SS+ V++T T L Y N+ YYP FR+ L T+ L Sbjct 33 VPSISSEVVDVTNGLGTFYVLDRVYLNTTLLLNGYYPISGATFRNMALKGTRLL------ 86 Query 61 NVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIV 120 + WF +S PFNDG+ FA + S + + + + T V Sbjct 87 STLWFKPPFLS-------------PFNDGI-FAKVKNSRFSKDGVIYSEFPAITIGSTFV 132 Query 121 NNATNVV-----------------IKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA 163 N + ++V I VC++ C P H N + + + Sbjct 133 NTSYSIVVEPHTSLINGNLQGLLQISVCQYTMCEYPH--TICHPNLGNQRIELWHYDTDV 190 Query 164 NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSAL 223 +C + + F D+ F +E G F Y T GF Sbjct 191 VSCLYR---RNFTYDVNADYLYFHFYQE------GGTFYAYFTDT----------GF-VT 230 Query 224 EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENG 283 + L L +G ++ + Y+ P +S A + Y+V L R FLL ++++G Sbjct 231 KFLFKLYLGTVLSHY---------YVMPLTCNS---ALSLEYWVTPLTTRQFLLAFDQDG 278 Query 284 TITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIV-RFPNITNLCPFGEVF 342 + AVDCA D +SE C S T G+Y+ + + VQP ++ R P++ N C Sbjct 279 VLYHAVDCASDFMSEIMCKTSSITPPTGVYELNGYTVQPVATVYRRIPDLPN-CDIEAWL 337 Query 343 NATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVI 402 N+ +S W RK SNC + L + +F C + ++L +CF ++ D F I Sbjct 338 NSKTVSSPLNWERKIFSNCNFNMGRLMSFIQADSFGCNNIDASRLYGMCFGSITIDKFAI 397 Query 403 RGDEVRQIAPGQTGKIADYNYKLPDDFTGC 432 + G++G + +NYK+ + C Sbjct 398 PNSRKVDLQVGKSGYLQSFNYKIDTAVSSC 427 >sp|Q02385|SPIKE_CVMJC Spike glycoprotein OS=Murine coronavirus (strain JHMV / variant CL-2) OX=33735 GN=S PE=1 SV=1 Length=1376 Score = 459 bits (1180), Expect = 4e-138, Method: Compositional matrix adjust. Identities = 282/757 (37%), Positives = 411/757 (54%), Gaps = 56/757 (7%) Query 530 STNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILDIT 588 +T + CV ++ G+TG GV E + +Q D+ + RD T + I Sbjct 624 NTEVATGVCVRYDLYGITGQGVFKEVKADYYNSWQALLYDVNGNLNGFRDLTTNKTYTIR 683 Query 589 PCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAG 648 C G VS + + A+LY+++NC+ V + + P N F + G Sbjct 684 SCYSGRVSAAY--HKEAPEPALLYRNINCSYVFTNNISREENPL--------NYFDSYLG 733 Query 649 CLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYT----MSLGAE 702 C++ A++ + CD+ +GAG+C Y RRAR S T M + Sbjct 734 CVVNADNRPDEALPNCDLRMGAGLCVDYSKS----RRARRSVSTGYRLTTFEPYMPMLVN 789 Query 703 NSVAYSNN--SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFC 760 +SV + IPTNFTI E + + K ++DC ++CGD+ C L++YGSFC Sbjct 790 DSVQSVGGLYEMQIPTNFTIGHHEEFIQIRAPKVTIDCAAFVCGDNAACRQQLVEYGSFC 849 Query 761 TQLNRALTGIAVEQDKNTQEVFAQVKQ----IYKTP-----PIKDFGGFNFSQILP---- 807 +N L + D +V + + Q + P PI D NFS +L Sbjct 850 DNVNAILNEVNNLLDNMQLQVASALMQGVTISSRLPDGISGPIDDI---NFSPLLGCIGS 906 Query 808 -------DPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTV 860 PS RS IEDLLF+KV L+D GF++ Y +C G RDL+C Q FNG+ V Sbjct 907 TCAEDGNGPSAMRGRSAIEDLLFDKVKLSDVGFVEAYNNCTGGQEVRDLLCVQSFNGIKV 966 Query 861 LPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQ 920 LPP+L++ I+ YT+ A + WT AG +PF++ + YR NG+GVT NVL ENQ Sbjct 967 LPPVLSESQISGYTAGATAAAMFPPWTAAAG----VPFSLNVQYRINGLGVTMNVLSENQ 1022 Query 921 KLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDI 980 K+IA+ FN+A+G IQ+ +T SALGK+Q VVN NA+ALN L+ QLS+ FGAIS+ L +I Sbjct 1023 KMIASAFNNALGAIQEGFDATNSALGKIQSVVNANAEALNNLLNQLSNRFGAISASLQEI 1082 Query 981 LSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV 1040 L+RLD+VEA+ QIDRLI GRL +L Y+++QL + I+ SA A K++ECV Q+ R+ Sbjct 1083 LTRLDRVEAKAQIDRLINGRLTALNAYISKQLSDSTLIKFSAAQAIEKVNECVKSQTTRI 1142 Query 1041 DFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNG 1099 +FCG G H++S Q+AP+G+ F+H +YVP K +P +C G + P+ G FV + Sbjct 1143 NFCGNGNHILSLVQNAPYGLCFIHFSYVPTSFKTANVSPGLCISGDRGLAPKAGYFVQDN 1202 Query 1100 THWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNH 1159 W T N+Y P+ IT N+ V +C V + P L FKEELDK+FKN Sbjct 1203 GEWKFTGSNYYYPEPITDKNSVVMISCAVNYTKAPEVFLNNSIPNLPDFKEELDKWFKNQ 1262 Query 1160 TS--PDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIW 1217 TS PD+ L D +N + +++ E++R+ + K LNES I+L+E+G YE Y+KWPWY+W Sbjct 1263 TSIAPDLSL-DFEKLNVTFLDLTYEMNRIQDAIKKLNESYINLKEVGTYEMYVKWPWYVW 1321 Query 1218 LGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCC 1254 L + GL + + ++ CGSCC Sbjct 1322 L--LIGLAGVAVCVLLFFICCCTGCGSCCFRKCGSCC 1356 Score = 90.5 bits (223), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 80/178 (45%), Gaps = 5/178 (3%) Query 259 TAGAAA---YYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQT 315 TAG+ Y+V L R +L +NE G IT AVDCA +SE KC +S G+Y Sbjct 249 TAGSTLLPLYWVTPLLKRQYLFNFNEKGVITSAVDCASSYISEIKCKTQSLLPSTGVYDL 308 Query 316 SNFRVQPTESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASF 374 S + VQP + R PN+ + C E A S W R+ NC + S L Sbjct 309 SGYTVQPVGVVYRRVPNLPD-CKIEEWLTAKSVPSPLNWERRTFQNCNFNLSSLLRYVQA 367 Query 375 STFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGC 432 + C + +K+ +CF +V D F I + G +G + NYK+ T C Sbjct 368 ESLSCNNIDASKVYGMCFGSVSVDKFAIPRSRQIDLQIGNSGFLQTANYKIDTAATSC 425 >sp|P22432|SPIKE_CVM4 Spike glycoprotein OS=Murine coronavirus (strain 4) OX=12760 GN=S PE=3 SV=1 Length=1376 Score = 459 bits (1180), Expect = 5e-138, Method: Compositional matrix adjust. Identities = 284/775 (37%), Positives = 416/775 (54%), Gaps = 57/775 (7%) Query 530 STNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILDIT 588 +T + CV ++ G+TG GV E + +Q D+ + RD T + I Sbjct 624 NTEVATGVCVRYDLYGITGQGVFKEVKADYYNSWQALLYDVNGNLNGFRDLTTNKTYTIR 683 Query 589 PCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAG 648 C G VS + + A+LY+++NC+ V + + P N F + G Sbjct 684 SCYSGRVSAAY--HKEAPEPALLYRNINCSYVFTNNISREENPL--------NYFDSYLG 733 Query 649 CLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYT----MSLGAE 702 C++ A++ + CD+ +GAG+C Y RRAR S T M + Sbjct 734 CVVNADNRTDEALPNCDLRMGAGLCVDYSKS----RRARRSVSTGYRLTTFEPYMPMLVN 789 Query 703 NSVAYSNN--SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFC 760 +SV + IPTNFTI E + + K ++DC ++CGD+ C L++YGSFC Sbjct 790 DSVQSVGGLYEMQIPTNFTIGHHEEFIQIRAPKVTIDCAAFVCGDNAACRQQLVEYGSFC 849 Query 761 TQLNRALTGIAVEQDKNTQEVFAQVKQ----IYKTP-----PIKDFGGFNFSQILP---- 807 +N L + D +V + + Q + P PI D NFS +L Sbjct 850 DNVNAILNEVNNLLDNMQLQVASALMQGVTISSRLPDGISGPIDDI---NFSPLLGCIGS 906 Query 808 -------DPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTV 860 PS RS IEDLLF+KV L+D GF++ Y +C G RDL+C Q FNG+ V Sbjct 907 TCAEDGNGPSAIRGRSAIEDLLFDKVKLSDVGFVEAYNNCTGGQEVRDLLCVQSFNGIKV 966 Query 861 LPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQ 920 LPP+L++ I+ YT+ A + WT AG +PF++ + YR NG+GVT NVL ENQ Sbjct 967 LPPVLSESQISGYTAGATAAAMFPPWTAAAG----VPFSLNVQYRINGLGVTMNVLSENQ 1022 Query 921 KLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDI 980 K+IA+ FN+A+G IQ+ +T SALGK+Q VVN NA+ALN L+ QLS+ FGAIS+ L +I Sbjct 1023 KMIASAFNNALGAIQEGFDATNSALGKIQSVVNANAEALNNLLNQLSNRFGAISASLQEI 1082 Query 981 LSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV 1040 L+RLD VEA+ QIDRLI GRL +L Y+++QL + I+ SA A K++ECV Q+ R+ Sbjct 1083 LTRLDAVEAKAQIDRLINGRLTALNAYISKQLSDSTLIKFSAAQAIEKVNECVKSQTTRI 1142 Query 1041 DFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNG 1099 +FCG G H++S Q+AP+G+ F+H +YVP K +P +C G + P+ G FV + Sbjct 1143 NFCGNGNHILSLVQNAPYGLCFIHFSYVPTSFKTANVSPGLCISGDRGLAPKAGYFVQDN 1202 Query 1100 THWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNH 1159 W T N+Y P+ IT N+ V +C V + P L FKEELDK+FKN Sbjct 1203 GEWKFTGSNYYYPEPITDKNSVVMISCAVNYTKAPEVFLNNSIPNLPDFKEELDKWFKNQ 1262 Query 1160 TS--PDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIW 1217 TS PD+ L D +N + +++ E++R+ + K LNES I+L+E+G YE Y+KWPWY+W Sbjct 1263 TSIAPDLSL-DFEKLNVTFLDLTYEMNRIQDAIKKLNESYINLKEVGTYEMYVKWPWYVW 1321 Query 1218 LGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCC-KFDEDDSEPVLKGVKLH 1271 L + GL + + ++ CGSCC ++ V+ + H Sbjct 1322 L--LIGLAGVAVCVLLFFICCCTGCGSCCFRKCGSCCDEYGGHQDSIVIHNISAH 1374 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 124/470 (26%), Positives = 184/470 (39%), Gaps = 84/470 (18%) Query 1 MFVFLVLLP--------LVSSQCVNLTTRTQLPPAYTN-----SFTRGVYYP-DKVFRSS 46 +FVF++LLP Q VN P+ + S G YY D+V+ ++ Sbjct 2 LFVFILLLPSCLGYIGDFRCIQTVNYNGNNASAPSISTEAVDVSKGLGTYYVLDRVYLNA 61 Query 47 VLHSTQDLFLPFFSNVTWFHAIHVSGTN--GTKRFDNPVL-PFNDGVYF----------- 92 L T + P + + + + ++GTN F P L FNDG++ Sbjct 62 TLLLTG--YYPV--DGSNYRNLALTGTNTLSLTWFKPPFLSEFNDGIFAKVQNLKTNTPT 117 Query 93 -ASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKS 151 A++ I+ G +FG T S T L NN ++ VC + C P+ + N Sbjct 118 GATSYFPTIVIGSLFGNT--SYTVVLEPYNNI--IMASVCTYTICQLPYTPCKPNTNGNR 173 Query 152 ----W-MESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSK 206 W + + + N TF V+ P+L F F G F Y Sbjct 174 VIGFWHTDVKPPICLLKRNFTFN-VNAPWLY--------------FHFYQQGGTFYAYYA 218 Query 207 HTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAA-- 264 P SA L + IG +T++ L + TP TAG+ Sbjct 219 DKP-----------SATTFLFSVYIGDILTQYFVLPFI----CTP-------TAGSTLLP 256 Query 265 -YYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPT 323 Y+V L R +L +NE G IT AVDCA +SE KC +S G+Y S + VQP Sbjct 257 LYWVTPLLKRQYLFNFNEKGVITSAVDCASSYISEIKCKTQSLLPSTGVYDLSGYTVQPV 316 Query 324 ESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGV 382 + R PN+ + C E A S W R+ NC + S L + C + Sbjct 317 GVVYRRVPNLPD-CKIEEWLTAKSVPSPLNWERRTFQNCNFNLSSLLRYVQAESLSCNNI 375 Query 383 SPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGC 432 +K+ +CF +V D F I + G +G + NYK+ T C Sbjct 376 DASKVYGMCFGSVSVDKFAIPRSRQIDLQIGNSGFLQTANYKIDTAATSC 425 >sp|Q9IKD1|SPIKE_CVRSD Spike glycoprotein OS=Rat coronavirus (strain 681) OX=33740 GN=S PE=3 SV=1 Length=1360 Score = 455 bits (1171), Expect = 6e-137, Method: Compositional matrix adjust. Identities = 285/774 (37%), Positives = 419/774 (54%), Gaps = 63/774 (8%) Query 530 STNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILDIT 588 +T +V CV ++ G TG GV E + +Q D+ + RD T + + Sbjct 611 NTEVVTGVCVKYDLYGSTGQGVFKEVKADYYNSWQNLLYDVNGNLNGFRDIVTNKTYLLR 670 Query 589 PCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAG 648 C G VS + + A+LY+++ C V + + TP N F + G Sbjct 671 SCYSGRVSAAY--HQDAPEPALLYRNLKCDYVFNNNISREETPL--------NYFDSYLG 720 Query 649 CLIGAEHVNNSYE-----CDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAEN 703 C+I A+ NS E CD+ +G+G+C +Y + R RSV++ Y ++ Sbjct 721 CVINAD---NSTEQSVDACDLRMGSGLCVNYSI---AHRARRSVST----GYKLTTFEPF 770 Query 704 SVAYSNNSIA---------IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLL 754 +V+ N+S+ IPTNFTI+ E + K ++DC ++CGD T C L+ Sbjct 771 TVSIVNDSVESVGGLYEMQIPTNFTIASHQEFIQTRSPKVTIDCAAFVCGDYTACRQQLV 830 Query 755 QYGSFCTQLNRALTGIAVEQDK-NTQEVFAQVKQIYKTPPIKD-----FGGFNFSQIL-- 806 YGSFC +N L + D Q A ++ + + + D NFS +L Sbjct 831 DYGSFCDNINAILGEVNNLIDTMQLQVASALIQGVTLSSRLADGISGQIDDINFSPLLGC 890 Query 807 --PDPSKPSK----RSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTV 860 D S+ +K RS IED+LF+KV L+D GF++ Y +C G RDL+C Q FNG+ V Sbjct 891 LGSDCSEGTKAAQGRSAIEDVLFDKVKLSDVGFVESYNNCTGGQEVRDLLCVQSFNGIKV 950 Query 861 LPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQ 920 LPP+L++ I+ YT+ A + W+ AG +PFA+ + YR NG+GVT NVL ENQ Sbjct 951 LPPVLSESQISGYTAGATASAMFPPWSAAAG----VPFALSVQYRINGLGVTMNVLSENQ 1006 Query 921 KLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDI 980 K+IA+ FN+AIG IQ+ +T SAL K+Q VVN NA+ALN L+ QLS+ FGAIS+ L +I Sbjct 1007 KMIASSFNNAIGAIQEGFDATNSALAKIQSVVNANAEALNNLLNQLSNRFGAISASLQEI 1066 Query 981 LSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV 1040 LSRLD +EA+ QIDRLI GRL +L YV++QL I+ SA A K++ECV QS R+ Sbjct 1067 LSRLDALEAQAQIDRLINGRLTALNAYVSKQLSDMTLIKVSAAQAIEKVNECVKSQSPRI 1126 Query 1041 DFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNG 1099 +FCG G H++S Q+AP+G+ F+H +YVP +P +C G + P+ G FV + Sbjct 1127 NFCGNGNHILSLVQNAPYGLYFIHFSYVPTSFTTVNVSPGLCISGDRGLAPKAGYFVQDH 1186 Query 1100 THWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNH 1159 W T N+Y P+ IT N+ V +C V + L FKEELDK+FKN Sbjct 1187 GEWKFTGSNYYYPESITDKNSVVMSSCAVNYTKAPEVFLNTSITNLPDFKEELDKWFKNQ 1246 Query 1160 TS--PDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIW 1217 TS PD+ DI +N + +++ E++R+ + KNLNES I+L+E+G YE Y+KWPWY+W Sbjct 1247 TSIVPDLSF-DIGKLNVTFLDLSYEMNRIQDAIKNLNESYINLKEIGTYEMYVKWPWYVW 1305 Query 1218 LGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLH 1271 L + GL + + ++ CG+CC D+ G+ +H Sbjct 1306 L--LIGLAGVAVCVLLFFICCCTGCGSCCFKKCGNCC----DEYGGRQAGIVIH 1353 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/178 (31%), Positives = 81/178 (46%), Gaps = 6/178 (3%) Query 259 TAGAAA--YYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTS 316 T+G ++ Y+V L R +L +N+ G IT AVDCA SE KC +S G+Y S Sbjct 250 TSGVSSPQYWVTPLVKRQYLFNFNQKGIITSAVDCASSYTSEIKCKTQSMNPNTGVYDLS 309 Query 317 NFRVQPTESIVRFPNITNL--CPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASF 374 + VQP + R + NL C E A S W RK NC + S L Sbjct 310 GYTVQPVGLVYR--RVRNLPDCKIEEWLAANTVPSPLNWERKTFQNCNFNLSSLLRFVQA 367 Query 375 STFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGC 432 + C + +K+ +CF ++ D F I + G++G + +NYK+ T C Sbjct 368 ESLSCSNIDASKVYGMCFGSISIDKFAIPNSRRVDLQLGKSGLLQSFNYKIDTRATSC 425 >sp|Q5MQD0|SPIKE_CVHN1 Spike glycoprotein OS=Human coronavirus HKU1 (isolate N1) OX=443239 GN=S PE=1 SV=1 Length=1356 Score = 452 bits (1164), Expect = 5e-136, Method: Compositional matrix adjust. Identities = 265/748 (35%), Positives = 413/748 (55%), Gaps = 45/748 (6%) Query 528 KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD 586 + +T + + CV+++ G+TG G+ E + + +Q D +D T + + Sbjct 611 QPNTEVFTDVCVDYDLYGITGQGIFKEVSAVYYNSWQNLLYDSNGNIIGFKDFVTNKTYN 670 Query 587 ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTR 646 I PC G VS +S +A+LY+++ C+ V + ++ T + Y F + Sbjct 671 IFPCYAGRVSAAFHQNASS--LALLYRNLKCSYV-----LNNISLTTQPY------FDSY 717 Query 647 AGCLIGAEHVNN--SYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS 704 GC+ A+++ + C + +G+G C Y + ++S R + + + +Y + Sbjct 718 LGCVFNADNLTDYSVSSCALRMGSGFCVDYNSPSSSSSRRKRRSISA--SYRFVTFEPFN 775 Query 705 VAYSNNSI---------AIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQ 755 V++ N+SI IPTNFTI E + + K ++DC++++C + C +LL + Sbjct 776 VSFVNDSIESVGGLYEIKIPTNFTIVGQEEFIQTNSPKVTIDCSLFVCSNYAACHDLLSE 835 Query 756 YGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQ------IYKTPPIKDFGGFNFSQI---L 806 YG+FC +N L + D V + Q T D NF + L Sbjct 836 YGTFCDNINSILDEVNGLLDTTQLHVADTLMQGVTLSSNLNTNLHFDVDNINFKSLVGCL 895 Query 807 PDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLT 866 S RSF EDLLF+KV L+D GF++ Y +C G RDL+C Q FNG+ VLPP+L+ Sbjct 896 GPHCGSSSRSFFEDLLFDKVKLSDVGFVEAYNNCTGGSEIRDLLCVQSFNGIKVLPPILS 955 Query 867 DEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ 926 + I+ YT+A + W+ AG IPF++ + YR NG+GVT +VL +NQKLIA Sbjct 956 ESQISGYTTAATVAAMFPPWSAAAG----IPFSLNVQYRINGLGVTMDVLNKNQKLIATA 1011 Query 927 FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDK 986 FN+A+ IQ+ S+T SAL K+Q VVN NAQALN+L++QL + FGAISS L +ILSRLD Sbjct 1012 FNNALLSIQNGFSATNSALAKIQSVVNSNAQALNSLLQQLFNKFGAISSSLQEILSRLDA 1071 Query 987 VEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKG 1046 +EA+VQIDRLI GRL +L YV+QQL + ++ A LA K++ECV QS R++FCG G Sbjct 1072 LEAQVQIDRLINGRLTALNAYVSQQLSDISLVKFGAALAMEKVNECVKSQSPRINFCGNG 1131 Query 1047 YHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHF-PREGVFVSNGTHWFVT 1105 H++S Q+AP+G++F+H +Y P K +P +C G P++G F+ + HW T Sbjct 1132 NHILSLVQNAPYGLLFMHFSYKPISFKTVLVSPGLCISGDVGIAPKQGYFIKHNDHWMFT 1191 Query 1106 QRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTS--PD 1163 ++Y P+ I+ N C V + P+L F+ EL +FKN TS P+ Sbjct 1192 GSSYYYPEPISDKNVVFMNTCSVNFTKAPLVYLNHSVPKLSDFESELSHWFKNQTSIAPN 1251 Query 1164 VDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAG 1223 + L ++ INA+ +++ E++ + E K+LN S I+L+++G YE Y+KWPWY+WL Sbjct 1252 LTL-NLHTINATFLDLYYEMNLIQESIKSLNNSYINLKDIGTYEMYVKWPWYVWLLISFS 1310 Query 1224 LIAIVMVTIMLCCMTSCCS-CLKGCCSC 1250 I +++ +CC T C S C C +C Sbjct 1311 FIIFLVLLFFICCCTGCGSACFSKCHNC 1338 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 2/173 (1%) Query 265 YYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTE 324 Y+V L R +LLK++ G IT+AVDC+ SE +C KS G+Y S F V+P Sbjct 256 YWVTPLSKRQYLLKFDNRGVITNAVDCSSSFFSEIQCKTKSLLPNTGVYDLSGFTVKPVA 315 Query 325 SI-VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVS 383 ++ R P++ + C + N S W RK SNC + S L +F C Sbjct 316 TVHRRIPDLPD-CDIDKWLNNFNVPSPLNWERKIFSNCNFNLSTLLRLVHTDSFSCNNFD 374 Query 384 PTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAW 436 +K+ CF ++ D F I + G +G + NYK+ + C + + Sbjct 375 ESKIYGSCFKSIVLDKFAIPNSRRSDLQLGSSGFLQSSNYKIDTTSSSCQLYY 427 >sp|P15423|SPIKE_CVH22 Spike glycoprotein OS=Human coronavirus 229E OX=11137 GN=S PE=1 SV=1 Length=1173 Score = 364 bits (934), Expect = 3e-105, Method: Compositional matrix adjust. Identities = 242/779 (31%), Positives = 369/779 (47%), Gaps = 101/779 (13%) Query 521 PATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQ 580 P V G N+ +KC +N ++G GV+ SN FL + + +D Sbjct 429 PQPVEGVSSFMNVTLDKCTKYNIYDVSGVGVIRVSNDTFLNGITYTSTSGNLL-GFKDVT 487 Query 581 TLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGS 640 I ITPC N +Q+ V Q A+ L+ + Y S Sbjct 488 KGTIYSITPC------------NPPDQLVVYQQ---------AVVGAMLSENFTSYGF-S 525 Query 641 NVFQTRAGCLIGAEHVNNSYECDIPI----GAGICASYQTQTNSPRRARSVASQSIIAYT 696 NV + N +Y C + G+CA PR + +I+ Sbjct 526 NVVELPKFFYAS----NGTYNCTDAVLTYSSFGVCADGSIIAVQPRNVSYDSVSAIVTAN 581 Query 697 MSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQY 756 +S IP+N+T SV E L ++ T VDC+ Y+C + C LL QY Sbjct 582 LS---------------IPSNWTTSVQVEYLQITSTPIVVDCSTYVCNGNVRCVELLKQY 626 Query 757 GSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPD----PSKP 812 S C + AL A + + E+ K+ + + FG +N S ++P S+ Sbjct 627 TSACKTIEDALRNSARLESADVSEMLTFDKKAFTLANVSSFGDYNLSSVIPSLPTSGSRV 686 Query 813 SKRSFIEDLLFNKVTLADAGFI-KQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA 871 + RS IED+LF+K+ + G + Y C ++ DL CAQ +NG+ VLP + E +A Sbjct 687 AGRSAIEDILFSKLVTSGLGTVDADYKKCTKGLSIADLACAQYYNGIMVLPGVADAERMA 746 Query 872 QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAI 931 YT +L+ G G T +A+ IPF++ + R N + + +VL ENQK++A FN A+ Sbjct 747 MYTGSLIGGIALGGLT----SAVSIPFSLAIQARLNYVALQTDVLQENQKILAASFNKAM 802 Query 932 GKIQDS--------------LSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVL 977 I D+ L + A+AL K+QDVVNQ +LN L QL NF AISS + Sbjct 803 TNIVDAFTGVNDAITQTSQALQTVATALNKIQDVVNQQGNSLNHLTSQLRQNFQAISSSI 862 Query 978 NDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQS 1037 I RLD ++A+ Q+DRLITGRL +L +V+ L + E+RAS LA K++ECV QS Sbjct 863 QAIYDRLDTIQADQQVDRLITGRLAALNVFVSHTLTKYTEVRASRQLAQQKVNECVKSQS 922 Query 1038 KRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHF----PREG 1093 KR FCG G H+ S +AP G+VFLH +P Q K+ +C DG + P Sbjct 923 KRYGFCGNGTHIFSIVNAAPEGLVFLHTVLLPTQYKDVEAWSGLCVDGTNGYVLRQPNLA 982 Query 1094 VFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPE---LDSFKE 1150 ++ G ++ +T R +EP+I T + NC+V ++ + + PE ++ + Sbjct 983 LY-KEGNYYRITSRIMFEPRIPTMADFVQIENCNVTFVNISRSELQTIVPEYIDVNKTLQ 1041 Query 1151 ELDKYFKNHTSPDVDLGDISGINASVVNIQKEID--------------RLNEVAKNLNES 1196 EL N+T PD+ + N +++N+ EI +L + N+N + Sbjct 1042 ELSYKLPNYTVPDL---VVEQYNQTILNLTSEISTLENKSAELNYTVQKLQTLIDNINST 1098 Query 1197 LIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCC-------SCLKGCC 1248 L+DL+ L + E YIKWPW++WL LI +V + ++ CC T CC S ++GCC Sbjct 1099 LVDLKWLNRVETYIKWPWWVWLCISVVLIFVVSMLLLCCCSTGCCGFFSCFASSIRGCC 1157 >sp|P12650|SPIKE_IBVK Spike glycoprotein OS=Avian infectious bronchitis virus (strain KB8523) OX=11126 GN=S PE=3 SV=1 Length=1162 Score = 352 bits (904), Expect = 2e-101, Method: Compositional matrix adjust. Identities = 202/543 (37%), Positives = 296/543 (55%), Gaps = 22/543 (4%) Query 711 SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGI 770 ++ IP +F ++VT E + M K ++C YICG+S EC NL QYG C + + + Sbjct 583 NVLIPNSFNLTVTDEYIQTRMDKVQINCLQYICGNSLECRNLFQQYGPVCDNMLSVVNSV 642 Query 771 AVEQDKNTQEVFAQVKQI-YKTPPIKDF--GGFNFSQILPDPSKPSKRSFIEDLLFNKVT 827 ++D ++ K + TP + + G FN S L PS P +RSFIEDLLF V Sbjct 643 GQKEDMELLNFYSSTKPAGFNTPVLSNVSTGEFNISLFLTTPSSPRRRSFIEDLLFTSVE 702 Query 828 LADAGFIKQYGDCLGDIAA--RDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSG 885 Y +C +DL+CA+++NGL VLPP++T EM YTS+L+A G Sbjct 703 SVGLPTDDAYKNCTAGPLGFLKDLVCAREYNGLLVLPPIITAEMQTLYTSSLVASMAFGG 762 Query 886 WTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASAL 945 T AA IPFA Q+ R N +G+TQ++L +NQ+ IA FN AIG +Q+ ST+ AL Sbjct 763 IT----AAGAIPFATQLQARINHLGITQSLLLKNQEKIAASFNKAIGHMQEGFRSTSLAL 818 Query 946 GKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQ 1005 ++QDVVN+ + L + L+ NFGAISSV+ +I +LD ++A Q+DRLITGRL SL Sbjct 819 QQIQDVVNKQSAILTETMASLNKNFGAISSVIQEIYLQLDAIQANAQVDRLITGRLSSLS 878 Query 1006 TYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHV 1065 + + + LA K++ECV QS R FCG G H+++ PQ+AP+G+VF+H Sbjct 879 VLASAKQAEYIRVSQQRELATQKINECVKSQSTRYSFCGNGRHVLTIPQNAPNGIVFIHF 938 Query 1066 TYVPAQEKNFTTAPAIC-----HDGKAHFP--REGVFVSNGTHWFVTQRNFYEPQIITTD 1118 TY P N T C A P G+F+ +++T R+ Y P+ IT Sbjct 939 TYTPESFVNVTAIVGFCVKPNNASQYAIVPVNGRGIFIQVNDSYYITARDMYMPRHITAG 998 Query 1119 NTFVSGNCDVVIGIVNNTVYDP-LQPELDSFKEELDKYF--KNHTSPDVDLGDISGINAS 1175 + +C VN TV ++ + F +EL K++ + PD D + + Sbjct 999 DIVTLTSCQANYVSVNKTVITTFVENDDFDFDDELSKWWIETKYELPDFDQFNYT---IP 1055 Query 1176 VVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLC 1235 V+NI +ID++ EV K LN+SLIDL+ L + YIKWPWY+WL I +++ + Sbjct 1056 VLNITYDIDKIEEVIKGLNDSLIDLETLSILKTYIKWPWYVWLAIAFATIIFILILGWVF 1115 Query 1236 CMT 1238 MT Sbjct 1116 FMT 1118 >sp|P12651|SPIKE_IBVM Spike glycoprotein OS=Avian infectious bronchitis virus (strain M41) OX=11127 GN=S PE=3 SV=1 Length=1162 Score = 349 bits (896), Expect = 3e-100, Method: Compositional matrix adjust. Identities = 198/543 (36%), Positives = 297/543 (55%), Gaps = 22/543 (4%) Query 711 SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGI 770 ++ IP +F ++VT E + M K ++C Y+CG+S +C +L QYG C + + I Sbjct 583 NVLIPNSFNLTVTDEYIQTRMDKVQINCLQYVCGNSLDCRDLFQQYGPVCDNILSVVNSI 642 Query 771 AVEQDKNTQEVFAQVKQI-YKTPPIKDF--GGFNFSQILPDPSKPSKRSFIEDLLFNKVT 827 ++D ++ K + TP + + G FN S +L PS P +RSFIEDLLF V Sbjct 643 GQKEDMELLNFYSSTKPAGFNTPFLSNVSTGEFNISLLLTTPSSPRRRSFIEDLLFTSVE 702 Query 828 LADAGFIKQYGDCLGDIAA--RDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSG 885 Y +C +DL CA+++NGL VLPP++T EM YTS+L+A G Sbjct 703 SVGLPTDDAYKNCTAGPLGFLKDLACAREYNGLLVLPPIITAEMQTLYTSSLVASMAFGG 762 Query 886 WTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASAL 945 T AA IPFA Q+ R N +G+TQ++L +NQ+ IA FN AIG++Q+ ST+ AL Sbjct 763 IT----AAGAIPFATQLQARINHLGITQSLLLKNQEKIAASFNKAIGRMQEGFRSTSLAL 818 Query 946 GKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQ 1005 ++QDVVN+ + L + L+ NFGAISSV+ +I +LD ++A Q+DRLITGRL SL Sbjct 819 QQIQDVVNKQSAILTETMASLNKNFGAISSVIQEIYQQLDAIQANAQVDRLITGRLSSLS 878 Query 1006 TYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHV 1065 + + + LA K++ECV QS R FCG G H+++ PQ+AP+G+VF+H Sbjct 879 VLASAKQAEHIRVSQQRELATQKINECVKSQSIRYSFCGNGRHVLTIPQNAPNGIVFIHF 938 Query 1066 TYVPAQEKNFTTAPAIC-----HDGKAHFPR--EGVFVSNGTHWFVTQRNFYEPQIITTD 1118 +Y P N T C A P G+F+ +++T R+ Y P+ IT Sbjct 939 SYTPDSFVNVTAIVGFCVKPANASQYAIVPANGRGIFIQVNGSYYITARDMYMPRAITAG 998 Query 1119 NTFVSGNCDVVIGIVNNTVYDP-LQPELDSFKEELDKYFKN--HTSPDVDLGDISGINAS 1175 + +C VN TV + + F +EL K++ + H PD D + + Sbjct 999 DIVTLTSCQANYVSVNKTVITTFVDNDDFDFNDELSKWWNDTKHELPDFDKFNYT---VP 1055 Query 1176 VVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLC 1235 +++I EIDR+ V + LN+SLIDL++L + YIKWPWY+WL I +++ + Sbjct 1056 ILDIDSEIDRIQGVIQGLNDSLIDLEKLSILKTYIKWPWYVWLAIAFATIIFILILGWVF 1115 Query 1236 CMT 1238 MT Sbjct 1116 FMT 1118 >sp|P05135|SPIKE_IBV6 Spike glycoprotein OS=Avian infectious bronchitis virus (strain 6/82) OX=11121 GN=S PE=3 SV=1 Length=1163 Score = 347 bits (890), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 202/543 (37%), Positives = 296/543 (55%), Gaps = 22/543 (4%) Query 711 SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGI 770 ++ IP +F ++VT E + M K ++C Y+CG+S EC L QYG C + + + Sbjct 584 NVLIPDSFNLTVTDEYIQTRMDKVQINCLQYVCGNSLECRKLFQQYGPVCDNILSVVNSV 643 Query 771 AVEQDKNTQEVFAQVK-QIYKTPPIKDF--GGFNFSQILPDPSKPSKRSFIEDLLFNKVT 827 ++D ++ K + TP + + G FN S +L PS S RSFIEDLLF V Sbjct 644 GQKEDMELLYFYSSTKPSGFNTPVLSNVSTGEFNISLLLTPPSSASGRSFIEDLLFTSVE 703 Query 828 LADAGFIKQYGDCLGDIAA--RDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSG 885 Y C +DL CA+++NGL VLPP++T EM YTS+L+A G Sbjct 704 SVGLPTDDAYKKCTAGPLGFLKDLACAREYNGLLVLPPIITAEMQTLYTSSLVASMAFGG 763 Query 886 WTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASAL 945 T AGA IPFA Q+ R N +G+TQ++L++NQ+ IA FN AIG +Q+ ST+ AL Sbjct 764 IT-SAGA---IPFATQLQARINHLGITQSLLFKNQEKIAASFNKAIGHMQEGFRSTSLAL 819 Query 946 GKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQ 1005 ++QDVVN+ + L + L+ NFGAISSVL DI +LD ++A+ Q+DR+ITGRL SL Sbjct 820 QQIQDVVNKQSSILTETMASLNKNFGAISSVLQDIYQQLDSIQADAQVDRIITGRLSSLS 879 Query 1006 TYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHV 1065 + + + LA K++ECV QS R FCG G H+++ PQ+AP+G+VF+H Sbjct 880 VLASAKQAEYYRVSQQRELATQKINECVKSQSIRYSFCGNGRHVLTIPQNAPNGIVFIHF 939 Query 1066 TYVPAQEKNFTTAPAICHDGK-----AHFPR--EGVFVSNGTHWFVTQRNFYEPQIITTD 1118 TY P N T C + A P G+F+ +++T R+ Y P+ IT Sbjct 940 TYTPESFVNVTAIVGFCVNPANASQYAIVPANGRGIFIQVNGSYYITARDMYMPRDITAG 999 Query 1119 NTFVSGNCDVVIGIVNNTVYDP-LQPELDSFKEELDKYFKN--HTSPDVDLGDISGINAS 1175 + +C VN TV + + F +EL K++ + H PD D + + Sbjct 1000 DIVTLTSCQANYVSVNKTVITTFVDNDDFDFDDELSKWWNDTKHELPDFDEFNYT---VP 1056 Query 1176 VVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLC 1235 +++I EIDR+ V + LN+SLIDL+ L + YIKWPWY+WL I ++V + Sbjct 1057 ILDIGSEIDRIQGVIQGLNDSLIDLETLSILKTYIKWPWYVWLAIAFLTIIFILVLCWIF 1116 Query 1236 CMT 1238 MT Sbjct 1117 FMT 1119 >sp|Q6Q1S2|SPIKE_CVHNL Spike glycoprotein OS=Human coronavirus NL63 OX=277944 GN=S PE=1 SV=1 Length=1356 Score = 349 bits (895), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 253/822 (31%), Positives = 379/822 (46%), Gaps = 113/822 (14%) Query 488 CYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLT 547 C FPL++ + + Y + P V G ++ +NLV N C +N Sbjct 577 CNFPLEATWHYTSYTIVGALYVTWSEGNSITGVPYPVSGIREFSNLVLNNCTKYNIYDYV 636 Query 548 GTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQ 607 GTG++ SN+ +A V + L L S G + ++TP N +Q Sbjct 637 GTGIIRSSNQS----------LAGGITYVSNSGNL--LGFKNVSTGNIFIVTP-CNQPDQ 683 Query 608 VAVLYQDV-----NCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYEC 662 VAV Q + E + P + S G N C +N Sbjct 684 VAVYQQSIIGAMTAVNESRYGLQNLLQLPNFYYVSNGGN------NCTTAVMTYSN---- 733 Query 663 DIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISV 722 GICA PR + +II +S IP+N+T SV Sbjct 734 -----FGICADGSLIPVRPRNSSDNGISAIITANLS---------------IPSNWTTSV 773 Query 723 TTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVF 782 E L ++ T VDC Y+C + C NLL QY S C + AL A + + + Sbjct 774 QVEYLQITSTPIVVDCATYVCNGNPRCKNLLKQYTSACKTIEDALRLSAHLETNDVSSML 833 Query 783 AQVKQIYKTPPIKDFGGFNFSQILPD----PSKPSKRSFIEDLLFNKVTLADAGFIK-QY 837 + + FG +N S +LP S+ + RS +EDLLF+KV + G + Y Sbjct 834 TFDSNAFSLANVTSFGDYNLSSVLPQRNIRSSRIAGRSALEDLLFSKVVTSGLGTVDVDY 893 Query 838 GDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIP 897 C ++ DL CAQ +NG+ VLP + E +A YT +L+ G + G T +A IP Sbjct 894 KSCTKGLSIADLACAQYYNGIMVLPGVADAERMAMYTGSLIGGMVLGGLT----SAAAIP 949 Query 898 FAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKI-------QDSLSSTAS------- 943 F++ + R N + + +VL ENQK++A FN AI I D+++ TA Sbjct 950 FSLALQARLNYVALQTDVLQENQKILAASFNKAINNIVASFSSVNDAITQTAEAIHTVTI 1009 Query 944 ALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQS 1003 AL K+QDVVNQ ALN L QL NF AIS+ + I RLD ++A+ Q+DRLITGRL + Sbjct 1010 ALNKIQDVVNQQGSALNHLTSQLRHNFQAISNSIQAIYDRLDSIQADQQVDRLITGRLAA 1069 Query 1004 LQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFL 1063 L +V+Q L + E+R S LA K++ECV QS R FCG G H+ S SAP G++FL Sbjct 1070 LNAFVSQVLNKYTEVRGSRRLAQQKINECVKSQSNRYGFCGNGTHIFSIVNSAPDGLLFL 1129 Query 1064 HVTYVPAQEKNFTTAPAICHDGKAHF----PREGVFVSNGTHWFVTQRNFYEPQIITTDN 1119 H +P KN IC DG + P ++ NG + VT R ++P++ + Sbjct 1130 HTVLLPTDYKNVKAWSGICVDGIYGYVLRQPNLVLYSDNGV-FRVTSRVMFQPRLPVLSD 1188 Query 1120 TFVSGNCDVVIGIVNNTVYDPLQPE-------LDSFKEELDKYFKNHTSPDVDLGDISGI 1172 NC+V ++ + P+ L F + L KY K P+ DL + Sbjct 1189 FVQIYNCNVTFVNISRVELHTVIPDYVDVNKTLQEFAQNLPKYVK----PNFDL---TPF 1241 Query 1173 NASVVNIQKEIDRLNEVAKNL--------------NESLIDLQELGKYEQYIKWPWYIWL 1218 N + +N+ E+ +L +L N + +DL+ L ++E YIKWPW++WL Sbjct 1242 NLTYLNLSSELKQLEAKTASLFQTTVELQGLIDQINSTYVDLKLLNRFENYIKWPWWVWL 1301 Query 1219 GFIAGLIAIVMVTIMLCCMTS----CCSCL----KGCCSCGS 1252 I+ + +++ ++ CC+++ CC+CL +GCC CGS Sbjct 1302 -IISVVFVVLLSLLVFCCLSTGCCGCCNCLTSSMRGCCDCGS 1342 >sp|P12722|SPIKE_IBVD2 Spike glycoprotein OS=Avian infectious bronchitis virus (strain D274) OX=11124 GN=S PE=3 SV=1 Length=1154 Score = 345 bits (886), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 201/543 (37%), Positives = 294/543 (54%), Gaps = 22/543 (4%) Query 711 SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGI 770 ++ IP +F ++VT E + M K ++C Y+CG+S EC L QYG C + + + Sbjct 584 NVLIPDSFNLTVTDEYIQTRMDKVQINCLQYVCGNSLECRKLFQQYGPVCDNILSVVNSV 643 Query 771 AVEQDKNTQEVFAQVK-QIYKTPPIKDF--GGFNFSQILPDPSKPSKRSFIEDLLFNKVT 827 ++D ++ K + TP + + G FN S +L PS S RSFIEDLLF V Sbjct 644 GQKEDMELLHFYSSTKPSGFNTPVLSNVSTGEFNISLLLTPPSSASGRSFIEDLLFTSVE 703 Query 828 LADAGFIKQYGDCLGDIAA--RDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSG 885 Y C +DL CA+++NGL VLPP++T EM YTS+L+A G Sbjct 704 SVGLPTDDAYKKCTAGPLGFLKDLACAREYNGLLVLPPIITAEMQTLYTSSLVASMAFGG 763 Query 886 WTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASAL 945 T GA IPFA Q+ R N +G+TQ++L +NQ+ IA FN AIG +Q+ ST+ AL Sbjct 764 IT-SVGA---IPFATQLQARINHLGITQSLLLKNQEKIAASFNKAIGHMQEGFRSTSLAL 819 Query 946 GKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQ 1005 ++QDVVN+ + L + L+ NFGAISSVL DI +LD ++A+ Q+DR+ITGRL SL Sbjct 820 QQIQDVVNKQSSILTETMASLNKNFGAISSVLQDIYQQLDSIQADAQVDRIITGRLSSLS 879 Query 1006 TYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHV 1065 + + + LA K++ECV QS R FCG G H+++ PQ+AP+G+VF+H Sbjct 880 VLASAKQAEYYRVSQQRELATQKINECVKSQSIRYSFCGNGRHVLTIPQNAPNGIVFIHF 939 Query 1066 TYVPAQEKNFTTAPAICHDGK-----AHFPR--EGVFVSNGTHWFVTQRNFYEPQIITTD 1118 TY P N T C + A P G+F+ +++T R+ Y P+ IT Sbjct 940 TYTPESFVNVTAIVGFCVNPANASQYAIVPANGRGIFIQVNGSYYITARDMYMPRDITAG 999 Query 1119 NTFVSGNCDVVIGIVNNTVYDP-LQPELDSFKEELDKYFKN--HTSPDVDLGDISGINAS 1175 + +C VN TV + + F +EL K++ + H PD D + + Sbjct 1000 DIVTLTSCQANYVSVNKTVITTFVDNDDFDFDDELSKWWNDTKHELPDFDEFNYT---VP 1056 Query 1176 VVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLC 1235 +++I EIDR+ V + LN+SLIDL+ L + YIKWPWY+WL I +++ L Sbjct 1057 ILDIGSEIDRIQGVIQGLNDSLIDLETLSILKTYIKWPWYVWLAIAFATIIFILILGWLF 1116 Query 1236 CMT 1238 MT Sbjct 1117 FMT 1119 >sp|P27655|SPIKE_CVPR8 Spike glycoprotein OS=Porcine respiratory coronavirus (strain 86/137004 / isolate British) OX=33736 GN=S PE=3 SV=1 Length=1225 Score = 344 bits (882), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 255/792 (32%), Positives = 390/792 (49%), Gaps = 119/792 (15%) Query 516 ELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLP---FQQFGRDI--- 569 ++ P+ G + L + C ++N G TG G++ ++N+ L + D+ Sbjct 440 SIVGVPSDNSGLHDLSVLHLDSCTDYNIYGRTGVGIIRQTNRTLLSGLYYTSLSGDLLGF 499 Query 570 ADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQL 629 + +D V I +TPC + I G A++ + +A+ + Sbjct 500 KNVSDGV-------IYSVTPCDVSAQAAIIDG-------AIVGAITSINSELLALTHWTI 545 Query 630 TPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARS 686 TP + YS + G IG+ N +C+ I G+C + Sbjct 546 TPNFYYYSIYNYTNDKTRGTPIGS----NDVDCEPVITYSNIGVCKN------------- 588 Query 687 VASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDS 746 + I T S G ++ N + IPTNFTISV E + V T S+DC+ Y+C + Sbjct 589 -GALVFINVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGN 645 Query 747 TECSNLLLQYGSFCTQLNRALT-GIAVEQDKNTQEVFAQ-----------------VKQI 788 C+ LL QY S C + +AL G +E + +F + I Sbjct 646 PRCNKLLTQYVSACQTIEQALAMGARLENMEVDSMLFVSENALKLASVEAFNSSETLDPI 705 Query 789 YKTPPIKDFGGF---NFSQILP-DPSKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGD 843 YK P + GGF ILP D SK RS IEDLLF+KV + G + + Y C G Sbjct 706 YKEWP--NIGGFWLEGLKYILPSDNSKRKYRSAIEDLLFSKVVTSGLGTVDEDYKRCTGG 763 Query 844 IAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMA 903 DL+CAQ +NG+ VLP + + + YT++L AG IT G G A+ IPFA+ + Sbjct 764 YDIADLVCAQYYNGIMVLPGVANADKMTMYTASL-AGGITLGAL--GGGAVAIPFAVAVQ 820 Query 904 YRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDS--------------LSSTASALGKLQ 949 R N + + +VL +NQ+++A+ FN AIG I S L++ A AL K+Q Sbjct 821 ARLNYVALQTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHQTSRGLTTVAKALAKVQ 880 Query 950 DVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVT 1009 DVVN QAL L QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L +V+ Sbjct 881 DVVNTQGQALRHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVS 940 Query 1010 QQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVP 1069 Q L R AE+RAS LA K++ECV QS R FCG G HL S +AP+G++F H +P Sbjct 941 QTLTRQAEVRASRQLAKDKVNECVKSQSHRFGFCGNGTHLFSLANAAPNGMIFFHTVLLP 1000 Query 1070 AQEKNFTTAPAICH-DGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFV 1122 + T IC DG F + +F + ++++T R Y+P++ T+ + Sbjct 1001 TAYETVTAWSGICALDGDRTFGLVVKDVQLTLFRNLDDNFYLTPRTMYQPRVATSSDFVQ 1060 Query 1123 SGNCDVVIGIVNNTVYD--PLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGINASV 1176 CDV+ VN TV D + P+ + ++ L+ + N T P++ + D+ NA+ Sbjct 1061 IEGCDVL--FVNTTVSDLPSIIPDYIDINQTVQDILENFRPNWTVPELTM-DV--FNATY 1115 Query 1177 VNIQKEIDRLN-----------EVA---KNLNESLIDLQELGKYEQYIKWPWYIWLGFIA 1222 +N+ EID L E+A N+N +L++L+ L + E Y+KWPWY+WL + Sbjct 1116 LNLTGEIDDLEFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LI 1173 Query 1223 GLIAIVMVTIML 1234 GL+ I + ++L Sbjct 1174 GLVVIFCIPLLL 1185 >sp|P11223|SPIKE_IBVB Spike glycoprotein OS=Avian infectious bronchitis virus (strain Beaudette) OX=11122 GN=S PE=1 SV=1 Length=1162 Score = 341 bits (875), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 195/543 (36%), Positives = 293/543 (54%), Gaps = 22/543 (4%) Query 711 SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGI 770 ++ IP +F ++VT E + M K ++C Y+CG S +C L QYG C + + + Sbjct 583 NVLIPNSFNLTVTDEYIQTRMDKVQINCLQYVCGSSLDCRKLFQQYGPVCDNILSVVNSV 642 Query 771 AVEQDKNTQEVFAQVKQI-YKTPPIKDF--GGFNFSQILPDPSKPSKRSFIEDLLFNKVT 827 ++D ++ K + TP + + G FN S +L +PS KRS IEDLLF V Sbjct 643 GQKEDMELLNFYSSTKPAGFNTPVLSNVSTGEFNISLLLTNPSSRRKRSLIEDLLFTSVE 702 Query 828 LADAGFIKQYGDCLGDIAA--RDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSG 885 Y +C +DL CA+++NGL VLPP++T EM A YTS+L+A G Sbjct 703 SVGLPTNDAYKNCTAGPLGFFKDLACAREYNGLLVLPPIITAEMQALYTSSLVASMAFGG 762 Query 886 WTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASAL 945 T AA IPFA Q+ R N +G+TQ++L +NQ+ IA FN AIG +Q+ ST+ AL Sbjct 763 IT----AAGAIPFATQLQARINHLGITQSLLLKNQEKIAASFNKAIGHMQEGFRSTSLAL 818 Query 946 GKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQ 1005 ++QDVV++ + L + L+ NFGAISSV+ +I + D ++A Q+DRLITGRL SL Sbjct 819 QQIQDVVSKQSAILTETMASLNKNFGAISSVIQEIYQQFDAIQANAQVDRLITGRLSSLS 878 Query 1006 TYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHV 1065 + + + LA K++ECV QS R FCG G H+++ PQ+AP+G+VF+H Sbjct 879 VLASAKQAEYIRVSQQRELATQKINECVKSQSIRYSFCGNGRHVLTIPQNAPNGIVFIHF 938 Query 1066 TYVPAQEKNFTTAPAIC-----HDGKAHFPR--EGVFVSNGTHWFVTQRNFYEPQIITTD 1118 +Y P N T C A P G+F+ +++T R+ Y P+ IT Sbjct 939 SYTPDSFVNVTAIVGFCVKPANASQYAIVPANGRGIFIQVNGSYYITARDMYMPRAITAG 998 Query 1119 NTFVSGNCDVVIGIVNNTVYDP-LQPELDSFKEELDKYFKN--HTSPDVDLGDISGINAS 1175 + +C VN TV + + F +EL K++ + H PD D + + Sbjct 999 DVVTLTSCQANYVSVNKTVITTFVDNDDFDFNDELSKWWNDTKHELPDFDKFNYT---VP 1055 Query 1176 VVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLC 1235 +++I EIDR+ V + LN+SLIDL++L + YIKWPWY+WL I +++ + Sbjct 1056 ILDIDSEIDRIQGVIQGLNDSLIDLEKLSILKTYIKWPWYVWLAIAFATIIFILILGWVF 1115 Query 1236 CMT 1238 MT Sbjct 1116 FMT 1118 >sp|P24413|SPIKE_CVPRM Spike glycoprotein OS=Porcine respiratory coronavirus (strain RM4) OX=11148 GN=S PE=1 SV=1 Length=1225 Score = 338 bits (868), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 254/792 (32%), Positives = 387/792 (49%), Gaps = 119/792 (15%) Query 516 ELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLP---FQQFGRDI--- 569 ++ P+ G + L + C ++N G TG G++ ++N+ L + D+ Sbjct 440 SIVGVPSDNSGLHDLSVLHLDSCTDYNIYGRTGVGIIRQTNRTILSGLYYTSLSGDLLGF 499 Query 570 ADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQL 629 + +D V I +TPC + I GT ++ + + T Sbjct 500 TNVSDGV-------IYSVTPCDVSAQAAIIDGTIVGAITSINSELLGLTHWTT------- 545 Query 630 TPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARS 686 TP + YS + G IG+ N +C+ I G+C + Sbjct 546 TPNFYYYSIYNYTNDKTRGTPIGS----NDVDCEPVITYSNIGVCKN------------- 588 Query 687 VASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDS 746 + I T S G ++ N + IPTNFTISV E + V T S+DC+ Y+C + Sbjct 589 -GALVFINVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGN 645 Query 747 TECSNLLLQYGSFCTQLNRALT-GIAVEQDKNTQEVFAQ-----------------VKQI 788 C+ LL QY S C + +AL G +E + +F + I Sbjct 646 PRCNKLLTQYVSACQTIEQALAMGARLENMEVDSMLFVSENALKLASVEAFNSSETLDPI 705 Query 789 YKTPPIKDFGGF---NFSQILP-DPSKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGD 843 YK P + GGF ILP D SK RS IEDLLF+KV + G + + Y C G Sbjct 706 YKEWP--NIGGFWLEGLKYILPSDNSKRKYRSAIEDLLFSKVVTSGLGTVDEDYKRCTGG 763 Query 844 IAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMA 903 DL+CAQ +NG+ VLP + + + YT++L AG IT G G A+ IPFA+ + Sbjct 764 YDIADLVCAQYYNGIMVLPGVANADKMTMYTASL-AGGITLGAL--GGGAVAIPFAVAVQ 820 Query 904 YRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDS--------------LSSTASALGKLQ 949 R N + + +VL +NQ+++A+ FN AIG I S L++ A AL K+Q Sbjct 821 ARLNYVALQTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHQTSRGLTTVAKALAKVQ 880 Query 950 DVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVT 1009 DVVN QAL L QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L +V+ Sbjct 881 DVVNTQGQALRHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVS 940 Query 1010 QQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVP 1069 Q L R AE+RAS LA K++ECV QS+R FCG G HL S +AP+G++F H +P Sbjct 941 QTLTRQAEVRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLP 1000 Query 1070 AQEKNFTTAPAICH-DGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFV 1122 + T IC D F + +F + +++T R Y+P++ T+ + Sbjct 1001 TAYETVTAWSGICALDVDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQ 1060 Query 1123 SGNCDVVIGIVNNTVYD--PLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGINASV 1176 CDV+ VN TV D + P+ + ++ L+ + N T P++ L D+ NA+ Sbjct 1061 IEGCDVL--FVNTTVSDLPSIIPDYIDINQTVQDILENFRPNWTVPELTL-DV--FNATY 1115 Query 1177 VNIQKEIDRLN-----------EVA---KNLNESLIDLQELGKYEQYIKWPWYIWLGFIA 1222 +N+ EID L E+A N+N ++++L+ L + E Y+KWPWY+WL + Sbjct 1116 LNLTGEIDDLEFRSEKLHNTTVELAILIDNINNTVVNLEWLNRIETYVKWPWYVWL--LI 1173 Query 1223 GLIAIVMVTIML 1234 GL+ I + ++L Sbjct 1174 GLVVIFCIPLLL 1185 >sp|Q65984|SPIKE_CVCAK Spike glycoprotein OS=Canine coronavirus (strain K378) OX=33732 GN=S PE=1 SV=1 Length=1453 Score = 339 bits (870), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 255/792 (32%), Positives = 389/792 (49%), Gaps = 121/792 (15%) Query 517 LLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLP---FQQFGRDI---A 570 ++ P+ G + L + C ++N G+TG G++ ++N L + D+ Sbjct 669 IVGVPSDNSGLHDLSVLHLDSCTDYNIYGITGVGIIRQTNSTLLSGLYYTSLSGDLLGFK 728 Query 571 DTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLT 630 + +D V I +TPC + + G ++ + + T T Sbjct 729 NVSDGV-------IYSVTPCDVSAHAAVIDGAIVGAMTSINSELLGLTHWTT-------T 774 Query 631 PTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPI----GAGICASYQTQTNSPRRARS 686 P + YS + + G I + N +C+ PI G+C + Sbjct 775 PNFYYYSIYNYTNERTRGTAIDS----NDVDCE-PIITYSNIGVCKN------------- 816 Query 687 VASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDS 746 + I T S G ++ N + IPTNFTISV E + V T S+DC+ Y+C + Sbjct 817 -GALVFINVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGN 873 Query 747 TECSNLLLQYGSFCTQLNRALT-GIAVEQDKNTQEVFAQ-----------------VKQI 788 C+ LL QY S C + +AL G +E + +F + I Sbjct 874 PRCNKLLTQYVSACQTIEQALAMGARLENMEIDSMLFVSENALKLASVEAFNSTETLDPI 933 Query 789 YKTPPIKDFGGF---NFSQILPDP-SKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGD 843 YK P + GG ILP SK RS IEDLLF+KV + G + + Y C G Sbjct 934 YKEWP--NIGGSWLGGLKDILPSHNSKRKYRSAIEDLLFDKVVTSGLGTVDEDYKRCTGG 991 Query 844 IAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMA 903 DL+CAQ +NG+ VLP + D+ +A YT++L AG IT G + G GA + IPFA+ + Sbjct 992 YDIADLVCAQYYNGIMVLPGVANDDKMAMYTASL-AGGITLG-SLGGGA-VSIPFAIAVQ 1048 Query 904 YRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDS--------------LSSTASALGKLQ 949 R N + + +VL +NQ+++AN FN AIG I + L++ A L K+Q Sbjct 1049 ARLNYVALQTDVLNKNQQILANAFNQAIGNITQAFGKVNDAIHQTSQGLATVAKVLAKVQ 1108 Query 950 DVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVT 1009 DVVN QAL+ L QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L +V+ Sbjct 1109 DVVNTQGQALSHLTLQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVS 1168 Query 1010 QQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVP 1069 Q L R AE+RAS LA K++ECV QS+R FCG G HL S +AP+G++F H +P Sbjct 1169 QTLTRQAEVRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLP 1228 Query 1070 AQEKNFTTAPAIC-HDGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFV 1122 + T IC DG F + +F + +++T R Y+P + T+ + Sbjct 1229 TAYETVTAWSGICASDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPIVATSSDFVQ 1288 Query 1123 SGNCDVVIGIVNNTVYD--PLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGINASV 1176 CDV+ VN TV D + P+ + ++ L+ + N T P++ L DI NA+ Sbjct 1289 IEGCDVL--FVNATVIDLPSIIPDYIDINQTVQDILENFRPNWTVPELPL-DI--FNATY 1343 Query 1177 VNIQKEIDRLN-----------EVA---KNLNESLIDLQELGKYEQYIKWPWYIWLGFIA 1222 +N+ EI+ L E+A N+N +L++L+ L + E Y+KWPWY+WL + Sbjct 1344 LNLTGEINDLEFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LI 1401 Query 1223 GLIAIVMVTIML 1234 GL+ I + I+L Sbjct 1402 GLVVIFCIPILL 1413 >sp|Q0Q466|SPIKE_BC512 Spike glycoprotein OS=Bat coronavirus 512/2005 OX=693999 GN=S PE=3 SV=1 Length=1371 Score = 337 bits (865), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 202/558 (36%), Positives = 302/558 (54%), Gaps = 43/558 (8%) Query 711 SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGI 770 +I+IPTNFT+SV TE + + SVDC MY+C + C LL QY S C + AL Sbjct 781 NISIPTNFTMSVRTEYIQLFNKPVSVDCAMYVCNGNDRCKQLLSQYTSACKNIESALQLS 840 Query 771 AVEQDKNTQEVFAQVKQIYKTPPIKDF--GGFNFSQILPDPSKPSKRSFIEDLLFNKVTL 828 A + + + K I F GG+NF+ ILP + P RS IED+LF+KV Sbjct 841 ARLESMEVNSMLTVSDEALKLATISQFPGGGYNFTNILP--ANPGARSVIEDILFDKVVT 898 Query 829 ADAGFIKQ-YGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWT 887 + G + + Y C ++ DL CAQ +NG+ VLP + E + Y+++L+ G G T Sbjct 899 SGLGTVDEDYKRCSNGLSIADLACAQHYNGIMVLPGVADWEKVHMYSASLVGGMTLGGIT 958 Query 888 FGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKI------------- 934 +A +PF+ + R N + + +VL NQ+++AN FNSAI I Sbjct 959 ----SAAALPFSYAVQARLNYVALQTDVLQRNQQMLANSFNSAISNITLAFESVNNAIYQ 1014 Query 935 -QDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQI 993 L++ A AL K+QDVVN AL+ L QL +NF AIS+ + DI SRLD++ A+ Q+ Sbjct 1015 TSAGLNTVAEALSKVQDVVNGQGNALSQLTVQLQNNFQAISNSIGDIYSRLDQITADAQV 1074 Query 994 DRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCG-KGYHLMSF 1052 DRLITGRL +L +V Q L + AE++AS LA K++ECV QS R FCG +G H+ S Sbjct 1075 DRLITGRLAALNAFVAQSLTKYAEVQASRTLAKQKVNECVKSQSPRYGFCGDEGEHIFSL 1134 Query 1053 PQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGK-AHFPREG---VFVSNGTHWFVTQRN 1108 Q+AP G++FLH VP N T +C D A R+ +FV NG ++ V+ R Sbjct 1135 TQAAPQGLMFLHTVLVPNGFINVTAVTGLCVDETIAMTLRQSGFVLFVQNG-NYLVSPRK 1193 Query 1109 FYEPQIITTDNTFVSGNCDV-VIGIVNNTVYDPLQPELDSFK--EELDKYFKNHTSPDVD 1165 +EP+ + C + + I NN + D + +D K +E+ N+T PD+ Sbjct 1194 MFEPRRPEVADFVQVKTCTISYVNITNNQLPDIIPDYVDVNKTIDEILANLPNNTVPDLP 1253 Query 1166 L-----------GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPW 1214 L G+I+ + A +++ + L ++ +N+N +L+DLQ L + E +IKWPW Sbjct 1254 LDVFNQTFLNLTGEIADLEARSESLKNTSEELRQLIQNINNTLVDLQWLNRVETFIKWPW 1313 Query 1215 YIWLGFIAGLIAIVMVTI 1232 Y+WL + LI +V + + Sbjct 1314 YVWLAIVIALILVVSLLV 1331 >sp|P10033|SPIKE_FIPV Spike glycoprotein OS=Feline coronavirus (strain FIPV WSU-79/1146) OX=33734 GN=S PE=1 SV=1 Length=1452 Score = 337 bits (865), Expect = 9e-95, Method: Compositional matrix adjust. Identities = 254/795 (32%), Positives = 389/795 (49%), Gaps = 116/795 (15%) Query 517 LLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLP---FQQFGRDI---A 570 ++ P+ G + L + C ++N G TG G++ +N L + D+ Sbjct 668 IVGVPSDNSGLHDLSVLHLDSCTDYNIYGRTGVGIIRRTNSTLLSGLYYTSLSGDLLGFK 727 Query 571 DTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLT 630 + +D V I +TPC + + G ++ + + T T Sbjct 728 NVSDGV-------IYSVTPCDVSAQAAVIDGAIVGAMTSINSELLGLTHWTT-------T 773 Query 631 PTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARSV 687 P + YS + + G I + N +C+ I G+C + Sbjct 774 PNFYYYSIYNYTSERTRGTAIDS----NDVDCEPVITYSNIGVCKN-------------- 815 Query 688 ASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDST 747 + I T S G ++ N + IPTNFTISV E + V T S+DC Y+C + Sbjct 816 GALVFINVTHSDGDVQPISTGN--VTIPTNFTISVQVEYMQVYTTPVSIDCARYVCNGNP 873 Query 748 ECSNLLLQYGSFCTQLNRALT-GIAVEQDKNTQEVF--------AQVKQIYKT----PPI 794 C+ LL QY S C + +AL G +E + +F A V+ T P Sbjct 874 RCNKLLTQYVSACQTIEQALAMGARLENMEVDSMLFVSENALKLASVEAFNSTENLDPIY 933 Query 795 KDFGGFNFSQI--LPD--PSKPSKRSF---IEDLLFNKVTLADAGFIKQ-YGDCLGDIAA 846 K++ S + L D PS SKR + IEDLLF+KV + G + + Y C G Sbjct 934 KEWPSIGGSWLGGLKDILPSHNSKRKYGSAIEDLLFDKVVTSGLGTVDEDYKRCTGGYDI 993 Query 847 RDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRF 906 DL+CAQ +NG+ VLP + + + YT++L AG IT G G A+ IPFA+ + R Sbjct 994 ADLVCAQYYNGIMVLPGVANADKMTMYTASL-AGGITLGAL--GGGAVAIPFAVAVQARL 1050 Query 907 NGIGVTQNVLYENQKLIANQFNSAIGKIQDS--------------LSSTASALGKLQDVV 952 N + + +VL +NQ+++AN FN AIG I + L++ A AL K+QDVV Sbjct 1051 NYVALQTDVLNKNQQILANAFNQAIGNITQAFGKVNDAIHQTSQGLATVAKALAKVQDVV 1110 Query 953 NQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQL 1012 N QAL+ L QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L +V+Q L Sbjct 1111 NTQGQALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQTL 1170 Query 1013 IRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQE 1072 R AE+RAS LA K++ECV QS+R FCG G HL S +AP+G++F H +P Sbjct 1171 TRQAEVRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPTAY 1230 Query 1073 KNFTTAPAIC-HDGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGN 1125 + T IC DG F + +F + +++T R Y+P++ T+ + Sbjct 1231 ETVTAWSGICASDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQIEG 1290 Query 1126 CDVVIGIVNNTVYD--PLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGINASVVNI 1179 CDV+ VN TV D + P+ + ++ L+ Y N T P+ L DI NA+ +N+ Sbjct 1291 CDVL--FVNATVIDLPSIIPDYIDINQTVQDILENYRPNWTVPEFTL-DI--FNATYLNL 1345 Query 1180 QKEIDRLN-----------EVA---KNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI 1225 EID L E+A N+N +L++L+ L + E Y+KWPWY+WL + GL+ Sbjct 1346 TGEIDDLEFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIGLV 1403 Query 1226 AIVMVTIML-CCMTS 1239 + + ++L CC ++ Sbjct 1404 VVFCIPLLLFCCFST 1418 >sp|P07946|SPIKE_CVPPU Spike glycoprotein OS=Porcine transmissible gastroenteritis coronavirus (strain Purdue) OX=11151 GN=S PE=1 SV=2 Length=1447 Score = 337 bits (864), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 253/791 (32%), Positives = 386/791 (49%), Gaps = 119/791 (15%) Query 517 LLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLP---FQQFGRDI---A 570 ++ P+ G + L + C ++N G TG G++ ++N+ L + D+ Sbjct 663 IVGVPSDNSGVHDLSVLHLDSCTDYNIYGRTGVGIIRQTNRTLLSGLYYTSLSGDLLGFK 722 Query 571 DTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLT 630 + +D V I +TPC + + GT ++ + + T T Sbjct 723 NVSDGV-------IYSVTPCDVSAQAAVIDGTIVGAITSINSELLGLTHWTT-------T 768 Query 631 PTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARSV 687 P + YS + G I + N +C+ I G+C + Sbjct 769 PNFYYYSIYNYTNDRTRGTAIDS----NDVDCEPVITYSNIGVCKN-------------- 810 Query 688 ASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDST 747 + I T S G ++ N + IPTNFTISV E + V T S+DC+ Y+C + Sbjct 811 GAFVFINVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNP 868 Query 748 ECSNLLLQYGSFCTQLNRALT-GIAVEQDKNTQEVFAQ-----------------VKQIY 789 C+ LL QY S C + +AL G +E + +F + IY Sbjct 869 RCNKLLTQYVSACQTIEQALAMGARLENMEVDSMLFVSENALKLASVEAFNSSETLDPIY 928 Query 790 KTPPIKDFGGF---NFSQILPDP-SKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDI 844 K P + GG ILP SK RS IEDLLF+KV + G + + Y C G Sbjct 929 KEWP--NIGGSWLEGLKYILPSHNSKRKYRSAIEDLLFDKVVTSGLGTVDEDYKRCTGGY 986 Query 845 AARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAY 904 DL+CAQ +NG+ VLP + + + YT++ LAG IT G G A+ IPFA+ + Sbjct 987 DIADLVCAQYYNGIMVLPGVANADKMTMYTAS-LAGGITLGAL--GGGAVAIPFAVAVQA 1043 Query 905 RFNGIGVTQNVLYENQKLIANQFNSAIGKIQDS--------------LSSTASALGKLQD 950 R N + + +VL +NQ+++A+ FN AIG I S L++ A AL K+QD Sbjct 1044 RLNYVALQTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHQTSRGLATVAKALAKVQD 1103 Query 951 VVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQ 1010 VVN QAL+ L QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L +V+Q Sbjct 1104 VVNIQGQALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQ 1163 Query 1011 QLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPA 1070 L R AE+RAS LA K++ECV QS+R FCG G HL S +AP+G++F H +P Sbjct 1164 TLTRQAEVRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPT 1223 Query 1071 QEKNFTTAPAIC-HDGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVS 1123 + T P IC DG F + +F + +++T R Y+P++ T+ + Sbjct 1224 AYETVTAWPGICASDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQI 1283 Query 1124 GNCDVVIGIVNNTVYD--PLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGINASVV 1177 CDV+ VN TV D + P+ + ++ L+ + N T P++ DI NA+ + Sbjct 1284 EGCDVL--FVNATVSDLPSIIPDYIDINQTVQDILENFRPNWTVPELTF-DI--FNATYL 1338 Query 1178 NIQKEIDRLN-----------EVA---KNLNESLIDLQELGKYEQYIKWPWYIWLGFIAG 1223 N+ EID L E+A N+N +L++L+ L + E Y+KWPWY+WL + G Sbjct 1339 NLTGEIDDLEFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIG 1396 Query 1224 LIAIVMVTIML 1234 L+ I + ++L Sbjct 1397 LVVIFCIPLLL 1407 >sp|Q7T6T3|SPIKE_CVCBG Spike glycoprotein OS=Canine coronavirus (strain BGF10) OX=441619 GN=S PE=3 SV=1 Length=1453 Score = 337 bits (863), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 257/824 (31%), Positives = 399/824 (48%), Gaps = 122/824 (15%) Query 485 GFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFN 544 G NC F + + GVG Y + ++ P+ G + L + C ++N Sbjct 638 GANCKFDVVARTRTNEQGVG-SLYVIYEEGDNIVGVPSDNSGLHDLSVLHLDSCTDYNIY 696 Query 545 GLTGTGVLTESNKKFLP---FQQFGRDI---ADTTDAVRDPQTLEILDITPCSFGGVSVI 598 G G G++ ++N L + D+ + +D V + +TPC + + Sbjct 697 GRNGVGIIRKTNSTLLSGLYYTSLSGDLLGFKNVSDGV-------VYSVTPCEVSAQAAV 749 Query 599 TPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNN 658 G ++ + + T TP + YS + + G + + N Sbjct 750 IDGAIVGAMTSINSELLGLTHWTT-------TPNFYYYSIYNYTNERVRGTVTDS----N 798 Query 659 SYECDIPI----GAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAI 714 +C+ PI G+C + + I T S G ++ N + I Sbjct 799 DVDCE-PIITYSNIGVCKN--------------GALVFINVTHSDGDVQPISTGN--VTI 841 Query 715 PTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALT-GIAVE 773 PTNFTISV E + V T S+DC+ Y+C ++ C+ LL QY S C + +AL G +E Sbjct 842 PTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNSRCNKLLTQYVSACHTIEQALAMGARLE 901 Query 774 QDKNTQEVFA-----------------QVKQIYKTPPIKDFGGF---NFSQILPDP-SKP 812 + +F + IY+ P + GG ILP SK Sbjct 902 NMEIDSMLFVSENALKLASVEAFNSTDNLDPIYREWP--NIGGSWLGGLKDILPSHNSKR 959 Query 813 SKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA 871 RS IEDLLF+KV + G + + Y C G DL+CAQ +NG+ VLP + D+ +A Sbjct 960 KYRSAIEDLLFDKVVTSGLGTVDEDYKRCTGGYDIADLVCAQYYNGIMVLPGVANDDKMA 1019 Query 872 QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAI 931 YT++L AG IT G G A+ IPFA+ + R N + + +VL +NQ+++AN FN AI Sbjct 1020 MYTASL-AGGITLGAL--GGGAVSIPFAVAVQARLNYVALQTDVLNKNQQILANAFNQAI 1076 Query 932 GKIQDS--------------LSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVL 977 G I + L++ A AL K+QDVVN QAL+ L QL +NF AISS + Sbjct 1077 GNITQAFGNVNDAIHQTSKGLATVAKALAKVQDVVNTQGQALSHLTVQLQNNFQAISSSI 1136 Query 978 NDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQS 1037 +DI +RLD++ A+ Q+DRLITGRL +L +V+Q L R AE+RAS LA K++ECV QS Sbjct 1137 SDIYNRLDELSADAQVDRLITGRLTALNAFVSQTLTRQAEVRASRQLAKDKVNECVRSQS 1196 Query 1038 KRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAIC-HDGKAHFP------ 1090 +R FCG G HL S +AP+G++F H +P + T IC DG F Sbjct 1197 QRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPTAYETVTAWSGICASDGNRTFGLVVKDV 1256 Query 1091 REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYD--PLQPEL--- 1145 + +F + +++T R Y+P++ T+ + CDV+ VN TV + + P+ Sbjct 1257 QLTLFRNLDYKFYLTPRTMYQPRVATSSDFVQIEGCDVL--FVNATVIELPSIIPDYIDI 1314 Query 1146 -DSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLN-----------EVA--- 1190 + ++ L+ + N T P++ L DI NA+ +N+ EI+ L E+A Sbjct 1315 NQTVQDILENFRPNWTVPELPL-DI--FNATYLNLTGEINDLEFRSEKLHNTTLELATLI 1371 Query 1191 KNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIML 1234 N+N +L++L+ L + E Y+KWPWY+WL + GL+ I + ++L Sbjct 1372 DNINNTLVNLEWLNRIETYVKWPWYVWL--LIGLVVIFCIPLLL 1413 >sp|P33470|SPIKE_CVPMI Spike glycoprotein OS=Porcine transmissible gastroenteritis coronavirus (strain Miller) OX=33737 GN=S PE=3 SV=2 Length=1449 Score = 335 bits (859), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 253/791 (32%), Positives = 385/791 (49%), Gaps = 119/791 (15%) Query 517 LLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLP---FQQFGRDI---A 570 ++ P+ G + L + C ++N G TG G++ ++N+ L + D+ Sbjct 665 IVGVPSDNSGLHDLSVLHLDSCTDYNIYGRTGVGIIRQTNRTLLSGLYYTSLSGDLLGFK 724 Query 571 DTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLT 630 + +D V I +TPC + + GT ++ + + T T Sbjct 725 NVSDGV-------IYSVTPCDVSAQAAVIDGTIVGAITSINSELLGLTHWTT-------T 770 Query 631 PTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARSV 687 P + YS + G I + N +C+ I G+C + Sbjct 771 PNFYYYSIYNYTNDRTRGTAIDS----NDVDCEPVITYSNIGVCKN-------------- 812 Query 688 ASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDST 747 + I T S G ++ N + IPTNFTISV E + V T S+DC+ Y+C + Sbjct 813 GALVFINVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNP 870 Query 748 ECSNLLLQYGSFCTQLNRALT-GIAVEQDKNTQEVFAQ-----------------VKQIY 789 C+ LL QY S C + +AL G +E + +F + IY Sbjct 871 RCNKLLTQYVSACQTIEQALAMGARLENMEVGSMLFVSENALKLASVEAFNSSETLDPIY 930 Query 790 KTPPIKDFGGF---NFSQILP-DPSKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDI 844 K P + GG ILP D SK RS IEDLLF KV + G + + Y C G Sbjct 931 KEWP--NIGGSWLEGLKYILPSDNSKRKYRSAIEDLLFAKVVTSGLGTVDEDYKRCTGGY 988 Query 845 AARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAY 904 DL+CAQ +NG+ VLP + + + YT++L AG IT G G A+ IPFA+ + Sbjct 989 DIADLVCAQYYNGIMVLPGVANADKMTMYTASL-AGGITLGAL--GGGAVAIPFAVAVQA 1045 Query 905 RFNGIGVTQNVLYENQKLIANQFNSAIGKIQDS--------------LSSTASALGKLQD 950 R N + + +VL +NQ+++A+ FN AIG I S L++ A AL K+QD Sbjct 1046 RLNYVALQTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHQTSRGLATVAKALAKVQD 1105 Query 951 VVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQ 1010 VVN QAL+ L QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L +V+Q Sbjct 1106 VVNTQGQALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQ 1165 Query 1011 QLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPA 1070 L R AE+RAS LA K++ECV QS+R FCG G HL S +AP+G++F H +P Sbjct 1166 TLTRQAEVRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPT 1225 Query 1071 QEKNFTTAPAICH-DGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVS 1123 + T IC DG F + +F + +++T R Y+P++ T+ + Sbjct 1226 AYETVTAWAGICALDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQI 1285 Query 1124 GNCDVVIGIVNNTVYD--PLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGINASVV 1177 CDV+ VN TV D + P+ + ++ L+ + N T P++ DI NA+ + Sbjct 1286 EGCDVL--FVNATVSDLPSIIPDYIDINQTVQDILENFRPNWTVPELTF-DI--FNATYL 1340 Query 1178 NIQKEIDRLN-----------EVA---KNLNESLIDLQELGKYEQYIKWPWYIWLGFIAG 1223 N+ EID L E+A N+N +L++L+ L + E Y+KWPWY+WL + G Sbjct 1341 NLTGEIDDLEFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIG 1398 Query 1224 LIAIVMVTIML 1234 L+ I + ++L Sbjct 1399 LVVIFCIPLLL 1409 >sp|Q01977|SPIKE_CVPRT Spike glycoprotein OS=Porcine transmissible gastroenteritis coronavirus (strain NEB72-rt) OX=33738 GN=S PE=3 SV=1 Length=1447 Score = 334 bits (856), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 252/791 (32%), Positives = 385/791 (49%), Gaps = 119/791 (15%) Query 517 LLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLP---FQQFGRDI---A 570 ++ P+ G + L + C ++N G TG G++ ++N+ L + D+ Sbjct 663 IVGVPSDNSGVHDLSVLHLDSCTDYNIYGRTGVGIIRKTNRTLLSGLYYTSLSGDLLGFK 722 Query 571 DTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLT 630 + +D V I +TPC + + GT ++ + + T T Sbjct 723 NVSDGV-------IYSVTPCDVSAQAAVIDGTIVGAITSINSELLGLTHWTT-------T 768 Query 631 PTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARSV 687 P + YS + G I + N +C+ I G+C + Sbjct 769 PNFYYYSIYNYTNDRTRGTAIDS----NDVDCEPVITYSNIGVCKN-------------- 810 Query 688 ASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDST 747 + I T S G ++ N + IPTNFTISV E + V T S+DC+ Y+C + Sbjct 811 GAFVFINVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNP 868 Query 748 ECSNLLLQYGSFCTQLNRALT-GIAVEQDKNTQEVFAQ-----------------VKQIY 789 C+ LL QY S C + +AL G +E + +F + IY Sbjct 869 RCNKLLTQYVSACQTIEQALAMGARLENMEVDSMLFVSENALKLASVEAFNSSETLDPIY 928 Query 790 KTPPIKDFGGF---NFSQILPDP-SKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDI 844 K P + GG ILP SK RS IEDLLF+KV + G + + Y C G Sbjct 929 KEWP--NIGGSWLEGLKYILPSHNSKRKYRSAIEDLLFDKVVTSGLGTVDEDYKRCTGGY 986 Query 845 AARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAY 904 DL+CAQ +NG+ VLP + + + YT++ LAG IT G G A+ IPFA+ + Sbjct 987 DIADLVCAQYYNGIMVLPGVANADKMTMYTAS-LAGGITLGAL--GGGAVAIPFAVAVQA 1043 Query 905 RFNGIGVTQNVLYENQKLIANQFNSAIGKIQDS--------------LSSTASALGKLQD 950 R N + + +VL +NQ+++A+ FN AIG I S L++ A AL K+QD Sbjct 1044 RLNYVALQTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHXTSRGLATVAKALAKVQD 1103 Query 951 VVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQ 1010 VV QAL+ L QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L +V+Q Sbjct 1104 VVXIQGQALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQ 1163 Query 1011 QLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPA 1070 L R AE+RAS LA K++ECV QS+R FCG G HL S +AP+G++F H +P Sbjct 1164 TLTRQAEVRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPT 1223 Query 1071 QEKNFTTAPAIC-HDGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVS 1123 + T P IC DG F + +F + +++T R Y+P++ T+ + Sbjct 1224 AYETVTAWPGICASDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQI 1283 Query 1124 GNCDVVIGIVNNTVYD--PLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGINASVV 1177 CDV+ VN TV D + P+ + ++ L+ + N T P++ DI NA+ + Sbjct 1284 EGCDVL--FVNATVSDLPSIIPDYIDINQTVQDILENFRPNWTVPELTF-DI--FNATYL 1338 Query 1178 NIQKEIDRLN-----------EVA---KNLNESLIDLQELGKYEQYIKWPWYIWLGFIAG 1223 N+ EID L E+A N+N +L++L+ L + E Y+KWPWY+WL + G Sbjct 1339 NLTGEIDDLEFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIG 1396 Query 1224 LIAIVMVTIML 1234 L+ I + ++L Sbjct 1397 LVVIFCIPLLL 1407 >sp|P18450|SPIKE_CVPFS Spike glycoprotein OS=Porcine transmissible gastroenteritis coronavirus (strain FS772/70) OX=11150 GN=S PE=3 SV=2 Length=1449 Score = 332 bits (851), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 250/791 (32%), Positives = 385/791 (49%), Gaps = 119/791 (15%) Query 517 LLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLP---FQQFGRDI---A 570 ++ P+ G + L + C ++N G +G G++ ++N+ L + D+ Sbjct 665 IVGVPSDNSGLHDLSVLHLDSCTDYNIYGRSGVGIIRQTNRTLLSGLYYTSLSGDLLGFK 724 Query 571 DTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLT 630 + +D V I +TPC + + GT ++ + + T T Sbjct 725 NVSDGV-------IYSVTPCDVSAQAAVIDGTIVGAITSINSELLGLTHWTT-------T 770 Query 631 PTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARSV 687 P + YS + G I + N +C+ I G+C + Sbjct 771 PNFYYYSIYNYTNDMTRGTAIDS----NDVDCEPVITYSNIGVCKN-------------- 812 Query 688 ASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDST 747 + I T S G ++ N + IPTNFTISV E + V T S+DC+ Y+C + Sbjct 813 GALVFINVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNP 870 Query 748 ECSNLLLQYGSFCTQLNRAL-TGIAVEQDKNTQEVFAQ-----------------VKQIY 789 C+ LL QY S C + +AL G +E + +F + IY Sbjct 871 RCNKLLTQYVSACQTIEQALAVGARLENMEVDSMLFVSENALKLASVEAFNSSETLDPIY 930 Query 790 KTPPIKDFGGF---NFSQILP-DPSKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDI 844 K P + GG ILP D SK RS IEDLLF+KV + G + + Y C G Sbjct 931 KEWP--NIGGSWLEGLKYILPSDNSKRKYRSAIEDLLFSKVVTSGLGTVDEDYKRCTGGY 988 Query 845 AARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAY 904 DL+CAQ +NG+ VLP + + + YT++L AG IT G G A+ IPFA+ + Sbjct 989 DIADLVCAQYYNGIMVLPGVANADKMTMYTASL-AGGITLGAL--GGGAVAIPFAVAVQA 1045 Query 905 RFNGIGVTQNVLYENQKLIANQFNSAIGKIQDS--------------LSSTASALGKLQD 950 R N + + +VL +NQ+++A+ FN AIG I S L++ A AL K+QD Sbjct 1046 RLNYVALQTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHQTSRGLATVAKALAKVQD 1105 Query 951 VVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQ 1010 VVN QAL+ L QL +NF AISS ++DI +RLD++ A+ +DRLITGRL +L +V+Q Sbjct 1106 VVNTQGQALSHLTVQLQNNFQAISSSISDIYNRLDELSADAHVDRLITGRLTALNAFVSQ 1165 Query 1011 QLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPA 1070 L R AE+RAS LA K++ECV QS+R FCG G HL S +AP+G++F H +P Sbjct 1166 TLTRQAEVRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHAVLLPT 1225 Query 1071 QEKNFTTAPAICH-DGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVS 1123 + T IC DG F + +F + +++T R Y+P++ T+ + Sbjct 1226 AYETVTAWAGICALDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQI 1285 Query 1124 GNCDVVIGIVNNTVYD--PLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGINASVV 1177 CDV+ VN T+ D + P+ + ++ L+ + N T P++ DI NA+ + Sbjct 1286 EGCDVL--FVNATLSDLPSIIPDYIDINQTVQDILENFRPNWTVPELTF-DI--FNATYL 1340 Query 1178 NIQKEIDRLN-----------EVA---KNLNESLIDLQELGKYEQYIKWPWYIWLGFIAG 1223 N+ EID L E+A N+N +L++L+ L + E Y+KWPWY+WL + G Sbjct 1341 NLTGEIDDLEFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIG 1398 Query 1224 LIAIVMVTIML 1234 L+ I + ++L Sbjct 1399 LVVIFCIPLLL 1409 >sp|P36300|SPIKE_CVCAI Spike glycoprotein OS=Canine coronavirus (strain Insavc-1) OX=36391 GN=S PE=1 SV=1 Length=1451 Score = 328 bits (841), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 249/794 (31%), Positives = 384/794 (48%), Gaps = 126/794 (16%) Query 517 LLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLP---FQQFGRDI---A 570 ++ P+ G + L + C ++N G TG G++ ++N L + D+ Sbjct 668 IVGVPSDNSGLHDLSVLHLDSCTDYNIYGRTGVGIIRKTNSTLLSGLYYTSLSGDLLGFK 727 Query 571 DTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLT 630 + +D V + +TPC + + G ++ + + T T Sbjct 728 NVSDGV-------VYSVTPCDVSAQAAVIDGAIVGAMTSINSELLGLTHWTT-------T 773 Query 631 PTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPI----GAGICASYQTQTNSPRRARS 686 P + YS + G I +N +C+ PI G+C + Sbjct 774 PNFYYYSIYNYTNVMNRGTAI-----DNDIDCE-PIITYSNIGVCKN------------- 814 Query 687 VASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDS 746 + I T S G ++ N + IPTNFTISV E + V T S+DC Y+C + Sbjct 815 -GALVFINVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCARYVCNGN 871 Query 747 TECSNLLLQYGSFCTQLNRALT-GIAVEQDKNTQEVFA-----------------QVKQI 788 C+ LL QY S C + +AL G +E + +F + I Sbjct 872 PRCNKLLTQYVSACQTIEQALAMGARLENMEIDSMLFVSENALKLASVEAFNSTENLDPI 931 Query 789 YKTPPIKDFGGF---NFSQILPDP-SKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGD 843 YK P + GG ILP SK RS IEDLLF+KV + G + + Y G Sbjct 932 YKEWP--NIGGSWLGGLKDILPSHNSKRKYRSAIEDLLFDKVVTSGLGTVDEDYKRSAGG 989 Query 844 IAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGA--GAALQIPFAMQ 901 DL+CA+ +NG+ VLP + D+ + YT++L T G T GA G A+ IPFA+ Sbjct 990 YDIADLVCARYYNGIMVLPGVANDDKMTMYTASL-----TGGITLGALSGGAVAIPFAVA 1044 Query 902 MAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDS--------------LSSTASALGK 947 + R N + + +VL +NQ+++AN FN AIG I + L++ A AL K Sbjct 1045 VQARLNYVALQTDVLNKNQQILANAFNQAIGNITQAFGKVNDAIHQTSKGLATVAKALAK 1104 Query 948 LQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTY 1007 +QDVVN QAL+ L QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L + Sbjct 1105 VQDVVNTQGQALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAF 1164 Query 1008 VTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTY 1067 V+Q L R AE+RAS LA K++ECV QS+R FCG G HL S +AP+G++F H Sbjct 1165 VSQTLTRQAEVRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVL 1224 Query 1068 VPAQEKNFTTAPAIC-HDGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNT 1120 +P + T IC DG F + +F + +++T R Y+P++ T+ + Sbjct 1225 LPTAYETVTAWSGICASDGSRTFGLVVEDVQLTLFRNLDEKFYLTPRTMYQPRVATSSDF 1284 Query 1121 FVSGNCDVVIGIVNNTVYD--PLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGINA 1174 CDV+ VN TV + + P+ + ++ L+ + N T P++ L DI +A Sbjct 1285 VQIEGCDVL--FVNGTVIELPSIIPDYIDINQTVQDILENFRPNWTVPELPL-DI--FHA 1339 Query 1175 SVVNIQKEIDRLN-----------EVA---KNLNESLIDLQELGKYEQYIKWPWYIWLGF 1220 + +N+ EI+ L E+A N+N +L++L+ L + E Y+KWPWY+WL Sbjct 1340 TYLNLTGEINDLEFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL-- 1397 Query 1221 IAGLIAIVMVTIML 1234 + GL+ I + I+L Sbjct 1398 LIGLVVIFCIPILL 1411 >sp|Q91AV1|SPIKE_PEDV7 Spike glycoprotein OS=Porcine epidemic diarrhea virus (strain CV777) OX=229032 GN=S PE=1 SV=1 Length=1383 Score = 314 bits (805), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 228/749 (30%), Positives = 351/749 (47%), Gaps = 101/749 (13%) Query 521 PATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQ 580 P + G + + + C + G G G++T +N L + D A ++ Sbjct 629 PKPLEGITDVSFMTLDVCTKYTIYGFKGEGIITLTNSSILAGVYYTSDSGQLL-AFKNVT 687 Query 581 TLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGS 640 + + +TPCSF S Q A + D+ V + + S + Sbjct 688 SGAVYSVTPCSF------------SEQAAYVNDDI------VGV----------ISSLSN 719 Query 641 NVFQTRAGCLIGAEHVNNSYECDIPI----GAGICASYQTQTNSPRRARSVASQSIIAYT 696 + F H N+ C P+ G+C S S S Q IA T Sbjct 720 STFNNTRELPGFFYHSNDGSNCTEPVLVYSNIGVCKS-----GSIGYVPSQYGQVKIAPT 774 Query 697 MSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQY 756 ++ +I+IPTNF++S+ TE L + T SVDC Y+C ++ C LL QY Sbjct 775 VT-----------GNISIPTNFSMSIRTEYLQLYNTPVSVDCATYVCNGNSRCKQLLTQY 823 Query 757 GSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGG--FNFSQILP----DPS 810 + C + AL A + + ++ + I F G +NF+ +L DP+ Sbjct 824 TAACKTIESALQLSARLESVEVNSMLTISEEALQLATISSFNGDGYNFTNVLGASVYDPA 883 Query 811 KP---SKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDIAARDLICAQKFNGLTVLPPLLT 866 KRS IEDLLFNKV G + + Y C + DL+CAQ ++G+ VLP ++ Sbjct 884 SGRVVQKRSVIEDLLFNKVVTNGLGTVDEDYKRCSNGRSVADLVCAQYYSGVMVLPGVVD 943 Query 867 DEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ 926 E + Y+++L+ G G T AA +PF+ + R N + + +VL NQ+L+A Sbjct 944 AEKLHMYSASLIGGMALGGIT----AAAALPFSYAVQARLNYLALQTDVLQRNQQLLAES 999 Query 927 FNSAIGKIQDS--------------LSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGA 972 FNSAIG I + L++ A AL K+Q+VVN ALN L QL NF A Sbjct 1000 FNSAIGNITSAFESVKEAISQTSKGLNTVAHALTKVQEVVNSQGSALNQLTVQLQHNFQA 1059 Query 973 ISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSEC 1032 ISS ++DI SRLD + A+VQ+DRLITGRL +L +V Q L + E++AS LA K++EC Sbjct 1060 ISSSIDDIYSRLDILSADVQVDRLITGRLSALNAFVAQTLTKYTEVQASRKLAQQKVNEC 1119 Query 1033 VLGQSKRVDFC-GKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFP- 1090 V QS+R FC G G H+ S Q+AP G++FLH VP N +C +G+ Sbjct 1120 VKSQSQRYGFCGGDGEHIFSLVQAAPQGLLFLHTVLVPGDFVNVLAIAGLCVNGEIALTL 1179 Query 1091 REGVFV--------SNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVV-IGIVNNTVYDPL 1141 RE V T +FV+ R +EP+ T + +C V + + ++ + D + Sbjct 1180 REPGLVLFTHELQTYTATEYFVSSRRMFEPRKPTVSDFVQIESCVVTYVNLTSDQLPDVI 1239 Query 1142 QPELDSFK--EELDKYFKNHTSPDVDL-----------GDISGINASVVNIQKEIDRLNE 1188 +D K +E+ N T P + L G+I+ + +++ + L Sbjct 1240 PDYIDVNKTLDEILASLPNRTGPSLPLDVFNATYLNLTGEIADLEQRSESLRNTTEELRS 1299 Query 1189 VAKNLNESLIDLQELGKYEQYIKWPWYIW 1217 + N+N +L+DL+ L + E YIKWPW++W Sbjct 1300 LINNINNTLVDLEWLNRVETYIKWPWWVW 1328 >sp|Q6GH02|TELL_STAAR TelA-like protein SAR1418 OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=SAR1418 PE=3 SV=1 Length=378 Score = 37.4 bits (85), Expect = 0.93, Method: Composition-based stats. Identities = 32/83 (39%), Positives = 44/83 (53%), Gaps = 10/83 (12%) Query 931 IGKIQDSLSSTASALGKLQDVVNQNAQALNT-LVKQLSSNFGAISSVLNDILSRLDKVEA 989 +G I D+LS S KL+ V N LNT L F S +N+I SR+ V A Sbjct 82 VGPIGDTLSDLMS---KLKSV---NPNELNTDKPSMLKRIFSRAKSSINEIFSRMQSVSA 135 Query 990 EVQIDRLITGRLQSLQTYVTQQL 1012 Q+DR IT +LQ QT++T+ + Sbjct 136 --QVDR-ITIQLQKHQTHLTRDI 155 >sp|Q5HG14|TELL_STAAC TelA-like protein SACOL1441 OS=Staphylococcus aureus (strain COL) OX=93062 GN=SACOL1441 PE=3 SV=1 Length=378 Score = 37.4 bits (85), Expect = 0.93, Method: Composition-based stats. Identities = 32/83 (39%), Positives = 44/83 (53%), Gaps = 10/83 (12%) Query 931 IGKIQDSLSSTASALGKLQDVVNQNAQALNT-LVKQLSSNFGAISSVLNDILSRLDKVEA 989 +G I D+LS S KL+ V N LNT L F S +N+I SR+ V A Sbjct 82 VGPIGDTLSDLMS---KLKSV---NPNELNTDKPSMLKRIFSRAKSSINEIFSRMQSVSA 135 Query 990 EVQIDRLITGRLQSLQTYVTQQL 1012 Q+DR IT +LQ QT++T+ + Sbjct 136 --QVDR-ITIQLQKHQTHLTRDI 155 >sp|Q2FYM7|TELL_STAA8 TelA-like protein SAOUHSC_01408 OS=Staphylococcus aureus (strain NCTC 8325 / PS 47) OX=93061 GN=SAOUHSC_01408 PE=3 SV=1 Length=378 Score = 37.4 bits (85), Expect = 0.93, Method: Composition-based stats. Identities = 32/83 (39%), Positives = 44/83 (53%), Gaps = 10/83 (12%) Query 931 IGKIQDSLSSTASALGKLQDVVNQNAQALNT-LVKQLSSNFGAISSVLNDILSRLDKVEA 989 +G I D+LS S KL+ V N LNT L F S +N+I SR+ V A Sbjct 82 VGPIGDTLSDLMS---KLKSV---NPNELNTDKPSMLKRIFSRAKSSINEIFSRMQSVSA 135 Query 990 EVQIDRLITGRLQSLQTYVTQQL 1012 Q+DR IT +LQ QT++T+ + Sbjct 136 --QVDR-ITIQLQKHQTHLTRDI 155 >sp|Q2FH32|TELL_STAA3 TelA-like protein SAUSA300_1299 OS=Staphylococcus aureus (strain USA300) OX=367830 GN=SAUSA300_1299 PE=3 SV=1 Length=378 Score = 37.4 bits (85), Expect = 0.93, Method: Composition-based stats. Identities = 32/83 (39%), Positives = 44/83 (53%), Gaps = 10/83 (12%) Query 931 IGKIQDSLSSTASALGKLQDVVNQNAQALNT-LVKQLSSNFGAISSVLNDILSRLDKVEA 989 +G I D+LS S KL+ V N LNT L F S +N+I SR+ V A Sbjct 82 VGPIGDTLSDLMS---KLKSV---NPNELNTDKPSMLKRIFSRAKSSINEIFSRMQSVSA 135 Query 990 EVQIDRLITGRLQSLQTYVTQQL 1012 Q+DR IT +LQ QT++T+ + Sbjct 136 --QVDR-ITIQLQKHQTHLTRDI 155 >sp|P60108|TELL_STAAN TelA-like protein SA1238 OS=Staphylococcus aureus (strain N315) OX=158879 GN=SA1238 PE=1 SV=1 Length=378 Score = 37.4 bits (85), Expect = 0.95, Method: Composition-based stats. Identities = 32/83 (39%), Positives = 44/83 (53%), Gaps = 10/83 (12%) Query 931 IGKIQDSLSSTASALGKLQDVVNQNAQALNT-LVKQLSSNFGAISSVLNDILSRLDKVEA 989 +G I D+LS S KL+ V N LNT L F S +N+I SR+ V A Sbjct 82 VGPIGDTLSDLMS---KLKSV---NPNELNTDKPSMLKRIFSRAKSSINEIFSRMQSVSA 135 Query 990 EVQIDRLITGRLQSLQTYVTQQL 1012 Q+DR IT +LQ QT++T+ + Sbjct 136 --QVDR-ITIQLQKHQTHLTRDI 155 >sp|P60107|TELL_STAAM TelA-like protein SAV1406 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=SAV1406 PE=3 SV=1 Length=378 Score = 37.4 bits (85), Expect = 0.95, Method: Composition-based stats. Identities = 32/83 (39%), Positives = 44/83 (53%), Gaps = 10/83 (12%) Query 931 IGKIQDSLSSTASALGKLQDVVNQNAQALNT-LVKQLSSNFGAISSVLNDILSRLDKVEA 989 +G I D+LS S KL+ V N LNT L F S +N+I SR+ V A Sbjct 82 VGPIGDTLSDLMS---KLKSV---NPNELNTDKPSMLKRIFSRAKSSINEIFSRMQSVSA 135 Query 990 EVQIDRLITGRLQSLQTYVTQQL 1012 Q+DR IT +LQ QT++T+ + Sbjct 136 --QVDR-ITIQLQKHQTHLTRDI 155 >sp|Q2YY12|TELL_STAAB TelA-like protein SAB1262 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) OX=273036 GN=SAB1262 PE=3 SV=1 Length=378 Score = 37.4 bits (85), Expect = 0.96, Method: Composition-based stats. Identities = 32/83 (39%), Positives = 44/83 (53%), Gaps = 10/83 (12%) Query 931 IGKIQDSLSSTASALGKLQDVVNQNAQALNT-LVKQLSSNFGAISSVLNDILSRLDKVEA 989 +G I D+LS S KL+ V N LNT L F S +N+I SR+ V A Sbjct 82 VGPIGDTLSDLMS---KLKSV---NPNELNTDKPSMLKRIFSRAKSSINEIFSRMQSVSA 135 Query 990 EVQIDRLITGRLQSLQTYVTQQL 1012 Q+DR IT +LQ QT++T+ + Sbjct 136 --QVDR-ITIQLQKHQTHLTRDI 155 >sp|Q8NWS1|TELL_STAAW TelA-like protein MW1294 OS=Staphylococcus aureus (strain MW2) OX=196620 GN=MW1294 PE=3 SV=1 Length=378 Score = 37.0 bits (84), Expect = 1.0, Method: Composition-based stats. Identities = 32/83 (39%), Positives = 44/83 (53%), Gaps = 10/83 (12%) Query 931 IGKIQDSLSSTASALGKLQDVVNQNAQALNT-LVKQLSSNFGAISSVLNDILSRLDKVEA 989 +G I D+LS S KL+ V N LNT L F S +N+I SR+ V A Sbjct 82 VGPIGDTLSDLIS---KLKSV---NPNELNTDKPSMLKRIFSRAKSSINEIFSRMQSVSA 135 Query 990 EVQIDRLITGRLQSLQTYVTQQL 1012 Q+DR IT +LQ QT++T+ + Sbjct 136 --QVDR-ITIQLQKHQTHLTRDI 155 >sp|Q6G9F5|TELL_STAAS TelA-like protein SAS1347 OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=SAS1347 PE=3 SV=1 Length=378 Score = 37.0 bits (84), Expect = 1.0, Method: Composition-based stats. Identities = 32/83 (39%), Positives = 44/83 (53%), Gaps = 10/83 (12%) Query 931 IGKIQDSLSSTASALGKLQDVVNQNAQALNT-LVKQLSSNFGAISSVLNDILSRLDKVEA 989 +G I D+LS S KL+ V N LNT L F S +N+I SR+ V A Sbjct 82 VGPIGDTLSDLIS---KLKSV---NPNELNTDKPSMLKRIFSRAKSSINEIFSRMQSVSA 135 Query 990 EVQIDRLITGRLQSLQTYVTQQL 1012 Q+DR IT +LQ QT++T+ + Sbjct 136 --QVDR-ITIQLQKHQTHLTRDI 155 >sp|B8F3P6|MUKF_GLAP5 Chromosome partition protein MukF OS=Glaesserella parasuis serovar 5 (strain SH0165) OX=557723 GN=mukF PE=3 SV=1 Length=443 Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust. Identities = 30/122 (25%), Positives = 61/122 (50%), Gaps = 15/122 (12%) Query 897 PFAMQMAYRFNGIGVTQNVLYENQK--------LIANQFNSAIGKIQDSLSSTASALGKL 948 P +A F+ I ++Q ++ ENQ+ L++ ++ AI Q L T+ L +L Sbjct 160 PLKFSVAEIFDSIDLSQRMMDENQQQIRERIAMLLSQNWHEAIATCQQLLDETSGNLREL 219 Query 949 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ--IDRLITGRLQSLQT 1006 QDV+N + L + + ++ S + D L +D++ +Q +DR+I+ Q++ Sbjct 220 QDVLNASGDKLQSQLLRIQSCL-----IGRDDLDFVDQLIVNLQNKLDRIISWGQQAIDL 274 Query 1007 YV 1008 ++ Sbjct 275 WI 276 >sp|Q38WX8|TYSY_LATSS Thymidylate synthase OS=Latilactobacillus sakei subsp. sakei (strain 23K) OX=314315 GN=thyA PE=3 SV=1 Length=316 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 19/39 (49%), Positives = 23/39 (59%), Gaps = 1/39 (3%) Query 822 LFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTV 860 LFN LAD GF KQYG+ LGDI + Q +G T+ Sbjct 124 LFNDRILADEGFAKQYGE-LGDIYGKQWRAWQTRSGETI 161 >sp|P48479|NIM1_NEUCR G2-specific protein kinase nim-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=nim-1 PE=2 SV=2 Length=858 Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust. Identities = 16/64 (25%), Positives = 38/64 (59%), Gaps = 0/64 (0%) Query 949 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYV 1008 ++ +N+ + L++ + L + +I + ++ L R +V+A ++IDRL+ ++SLQ Sbjct 310 EETLNKRIRELDSKLSALETEKSSIRAEIDASLRREWEVKARLEIDRLVAQEIESLQQKF 369 Query 1009 TQQL 1012 Q++ Sbjct 370 EQEV 373 >sp|A1S7B2|HFLD_SHEAM High frequency lysogenization protein HflD homolog OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) OX=326297 GN=hflD PE=3 SV=1 Length=204 Score = 34.7 bits (78), Expect = 3.7, Method: Composition-based stats. Identities = 26/82 (32%), Positives = 41/82 (50%), Gaps = 7/82 (9%) Query 934 IQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQI 993 ++ LS + +ALG L + +NQ + LN ++S+ +DI+S L ++Q Sbjct 91 LERKLSRSNAALGMLSERINQIHRQLNHFAITDEQVIANLASIYSDIISNLG---PKLQ- 146 Query 994 DRLITGRLQSLQTYVTQQLIRA 1015 ITG LQ + QQ IRA Sbjct 147 ---ITGNPNVLQRPLVQQKIRA 165 >sp|A3PBY1|MEND_PROM0 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase OS=Prochlorococcus marinus (strain MIT 9301) OX=167546 GN=menD PE=3 SV=1 Length=587 Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust. Identities = 29/117 (25%), Positives = 44/117 (38%), Gaps = 22/117 (19%) Query 75 GTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQ 134 G R NP+L + F I GW+ ++D LLI NN N+ ++ + Sbjct 456 GISRIKNPLLLVTGDLAFVHD-----INGWLIENSVDMNLTILLIDNNGGNIFNRIYKKN 510 Query 135 FCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLRE 191 D F ++ +W + S + F+ VS NFK LRE Sbjct 511 LKEDEFKKLFLMPKEINWSK-----LSESYQVKFKSVS------------NFKKLRE 550 >sp|Q9HG09|PEX14_PICPA Peroxisomal membrane protein PEX14 OS=Komagataella pastoris OX=4922 GN=PEX14 PE=1 SV=1 Length=425 Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust. Identities = 25/94 (27%), Positives = 42/94 (45%), Gaps = 11/94 (12%) Query 905 RFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQAL----- 959 F + N E+QK + GKI+D+L+ + + K + N ++L Sbjct 144 EFTRVEALLNTFEEDQKAFYEEQREKSGKIEDTLTEIDAIISKTNEKNLNNEESLKYLKL 203 Query 960 ------NTLVKQLSSNFGAISSVLNDILSRLDKV 987 NTL+K + S ISS L I ++LD++ Sbjct 204 EIESIKNTLMKNIDSQKSTISSELGSIEAQLDEL 237 >sp|Q9PKF2|SKPL_CHLMU Skp-like protein OS=Chlamydia muridarum (strain MoPn / Nigg) OX=243161 GN=TC_0513 PE=3 SV=1 Length=173 Score = 33.5 bits (75), Expect = 7.8, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 17/132 (13%) Query 909 IGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQD------VVNQNAQALNTL 962 +G ++ +E K NQF+++IGK+++ LSS S KLQD + A L Sbjct 40 LGKKESAEFEKMK---NQFSNSIGKMEEELSSIYS---KLQDDDYMEGLSESAAAELRKK 93 Query 963 VKQLSSNF----GAISSVLN-DILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAE 1017 ++LSS + G +LN + L R+ K+ V+ + + L + + ++ A + Sbjct 94 FEELSSEYNTAQGQYYQILNQNNLKRMQKIMEAVKKASEVVRIQEGLSALLNEDIVLAID 153 Query 1018 IRASANLAATKM 1029 + A K+ Sbjct 154 TSSDKTDAVIKI 165 >sp|Q9UL45|BL1S6_HUMAN Biogenesis of lysosome-related organelles complex 1 subunit 6 OS=Homo sapiens OX=9606 GN=BLOC1S6 PE=1 SV=1 Length=172 Score = 33.1 bits (74), Expect = 9.6, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 2/60 (3%) Query 1145 LDSFKEELDKYFKNHTSPDVD--LGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQE 1202 LD+ ++E+ K+ + H+ D++ + +A +VNI+KE+ L+E L + + LQ+ Sbjct 82 LDTLEQEISKFKECHSMLDINALFAEAKHYHAKLVNIRKEMLMLHEKTSKLKKRALKLQQ 141 Lambda K H a alpha 0.320 0.135 0.412 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 151247772180 Results from round 2 Query= sp|P0DTC2|SPIKE_SARS2 Spike glycoprotein OS=Severe acute respiratory syndrome coronavirus 2 OX=2697049 GN=S PE=1 SV=1 Length=1273 Score E Sequences producing significant alignments: (Bits) Value Sequences used in model and found again: sp|P0DTC2|SPIKE_SARS2 Spike glycoprotein OS=Severe acute respirat... 1706 0.0 sp|Q3LZX1|SPIKE_BCHK3 Spike glycoprotein OS=Bat coronavirus HKU3 ... 1624 0.0 sp|P59594|SPIKE_SARS Spike glycoprotein OS=Severe acute respirato... 1624 0.0 sp|Q3I5J5|SPIKE_BCRP3 Spike glycoprotein OS=Bat coronavirus Rp3/2... 1615 0.0 sp|Q0Q475|SPIKE_BC279 Spike glycoprotein OS=Bat coronavirus 279/2... 1613 0.0 sp|P11225|SPIKE_CVMJH Spike glycoprotein OS=Murine coronavirus (s... 1317 0.0 sp|P11224|SPIKE_CVMA5 Spike glycoprotein OS=Murine coronavirus (s... 1273 0.0 sp|A3EXG6|SPIKE_BCHK9 Spike glycoprotein OS=Bat coronavirus HKU9 ... 1200 0.0 sp|Q0Q4F2|SPIKE_BC133 Spike glycoprotein OS=Bat coronavirus 133/2... 1140 0.0 sp|P25191|SPIKE_CVBL9 Spike glycoprotein OS=Bovine coronavirus (s... 1138 0.0 sp|A3EXD0|SPIKE_BCHK5 Spike glycoprotein OS=Bat coronavirus HKU5 ... 1129 0.0 sp|A3EX94|SPIKE_BCHK4 Spike glycoprotein OS=Bat coronavirus HKU4 ... 1129 0.0 sp|K9N5Q8|SPIKE_MERS1 Spike glycoprotein OS=Middle East respirato... 1110 0.0 sp|Q9IKD1|SPIKE_CVRSD Spike glycoprotein OS=Rat coronavirus (stra... 1097 0.0 sp|Q0ZME7|SPIKE_CVHN5 Spike glycoprotein OS=Human coronavirus HKU... 1094 0.0 sp|Q14EB0|SPIKE_CVHN2 Spike glycoprotein OS=Human coronavirus HKU... 1092 0.0 sp|P25193|SPIKE_CVBQ Spike glycoprotein OS=Bovine coronavirus (st... 1091 0.0 sp|Q5MQD0|SPIKE_CVHN1 Spike glycoprotein OS=Human coronavirus HKU... 1050 0.0 sp|Q9QAR5|SPIKE_CVBLS Spike glycoprotein OS=Bovine coronavirus (s... 995 0.0 sp|P25192|SPIKE_CVBLY Spike glycoprotein OS=Bovine coronavirus (s... 986 0.0 sp|Q8V436|SPIKE_CVBLU Spike glycoprotein OS=Bovine coronavirus (s... 985 0.0 sp|Q9QAQ8|SPIKE_CVBOK Spike glycoprotein OS=Bovine coronavirus (s... 984 0.0 sp|P36334|SPIKE_CVHOC Spike glycoprotein OS=Human coronavirus OC4... 963 0.0 sp|P25194|SPIKE_CVBV Spike glycoprotein OS=Bovine coronavirus (st... 924 0.0 sp|Q91A26|SPIKE_CVBEN Spike glycoprotein OS=Bovine coronavirus (s... 924 0.0 sp|P15777|SPIKE_CVBM Spike glycoprotein OS=Bovine coronavirus (st... 919 0.0 sp|P25190|SPIKE_CVBF Spike glycoprotein OS=Bovine coronavirus (st... 917 0.0 sp|Q8BB25|SPIKE_CVP67 Spike glycoprotein OS=Porcine hemagglutinat... 914 0.0 sp|P22432|SPIKE_CVM4 Spike glycoprotein OS=Murine coronavirus (st... 911 0.0 sp|Q02385|SPIKE_CVMJC Spike glycoprotein OS=Murine coronavirus (s... 906 0.0 sp|Q8JSP8|SPIKE_CVPIA Spike glycoprotein OS=Porcine hemagglutinat... 903 0.0 sp|Q7T6T3|SPIKE_CVCBG Spike glycoprotein OS=Canine coronavirus (s... 797 0.0 sp|P10033|SPIKE_FIPV Spike glycoprotein OS=Feline coronavirus (st... 796 0.0 sp|Q65984|SPIKE_CVCAK Spike glycoprotein OS=Canine coronavirus (s... 795 0.0 sp|P27655|SPIKE_CVPR8 Spike glycoprotein OS=Porcine respiratory c... 794 0.0 sp|P07946|SPIKE_CVPPU Spike glycoprotein OS=Porcine transmissible... 794 0.0 sp|Q01977|SPIKE_CVPRT Spike glycoprotein OS=Porcine transmissible... 791 0.0 sp|P24413|SPIKE_CVPRM Spike glycoprotein OS=Porcine respiratory c... 790 0.0 sp|P33470|SPIKE_CVPMI Spike glycoprotein OS=Porcine transmissible... 789 0.0 sp|P18450|SPIKE_CVPFS Spike glycoprotein OS=Porcine transmissible... 783 0.0 sp|P36300|SPIKE_CVCAI Spike glycoprotein OS=Canine coronavirus (s... 780 0.0 sp|P15423|SPIKE_CVH22 Spike glycoprotein OS=Human coronavirus 229... 769 0.0 sp|Q6Q1S2|SPIKE_CVHNL Spike glycoprotein OS=Human coronavirus NL6... 754 0.0 sp|Q0Q466|SPIKE_BC512 Spike glycoprotein OS=Bat coronavirus 512/2... 709 0.0 sp|Q91AV1|SPIKE_PEDV7 Spike glycoprotein OS=Porcine epidemic diar... 707 0.0 sp|P12651|SPIKE_IBVM Spike glycoprotein OS=Avian infectious bronc... 697 0.0 sp|P12722|SPIKE_IBVD2 Spike glycoprotein OS=Avian infectious bron... 689 0.0 sp|P05135|SPIKE_IBV6 Spike glycoprotein OS=Avian infectious bronc... 689 0.0 sp|P12650|SPIKE_IBVK Spike glycoprotein OS=Avian infectious bronc... 688 0.0 sp|P11223|SPIKE_IBVB Spike glycoprotein OS=Avian infectious bronc... 687 0.0 Sequences not found previously or not previously below threshold: sp|P17662|SPIKE_IBVD3 Spike glycoprotein (Fragment) OS=Avian infe... 52.9 2e-05 sp|P30207|SPIKE_IBVU2 Spike glycoprotein (Fragment) OS=Avian infe... 52.5 2e-05 sp|P30208|SPIKE_IBVU3 Spike glycoprotein (Fragment) OS=Avian infe... 52.1 3e-05 sp|P30206|SPIKE_IBVU1 Spike glycoprotein (Fragment) OS=Avian infe... 52.1 3e-05 sp|B0R6I4|BAST_HALS3 Transducer protein BasT OS=Halobacterium sal... 50.2 1e-04 sp|B8F3P6|MUKF_GLAP5 Chromosome partition protein MukF OS=Glaesse... 41.7 0.043 sp|A8F461|FLGI_PSELT Flagellar P-ring protein OS=Pseudothermotoga... 40.5 0.075 sp|P30141|MRP4_STRPY Fibrinogen- and Ig-binding protein OS=Strept... 40.1 0.12 sp|Q3BUW9|CCME1_XANC5 Cytochrome c-type biogenesis protein CcmE 1... 38.2 0.15 sp|Q6LUI8|PNP_PHOPR Polyribonucleotide nucleotidyltransferase OS=... 38.2 0.66 sp|Q9X0M7|MCP2_THEMA Methyl-accepting chemotaxis protein 2 OS=The... 37.8 0.77 sp|Q08581|SLK19_YEAST Kinetochore protein SLK19 OS=Saccharomyces ... 37.8 0.92 sp|Q8PLW2|CCME1_XANAC Cytochrome c-type biogenesis protein CcmE 1... 35.9 1.1 sp|Q8PA33|CCME1_XANCP Cytochrome c-type biogenesis protein CcmE 1... 35.5 1.4 sp|Q4UTK2|CCME1_XANC8 Cytochrome c-type biogenesis protein CcmE 1... 35.5 1.4 sp|P0DM86|CRFC_ECOLX Clamp-binding protein CrfC OS=Escherichia co... 36.7 1.8 sp|Q008X4|SPIKE_WBV24 Spike glycoprotein OS=White bream virus (is... 36.7 1.9 sp|O54990|PROM1_MOUSE Prominin-1 OS=Mus musculus OX=10090 GN=Prom... 36.7 2.0 sp|A5N4M6|SYC_CLOK5 Cysteine--tRNA ligase OS=Clostridium kluyveri... 35.5 3.5 sp|B9DY88|SYC_CLOK1 Cysteine--tRNA ligase OS=Clostridium kluyveri... 35.5 3.5 sp|Q09094|REC15_SCHPO Meiotic recombination protein rec15 OS=Schi... 34.4 3.5 sp|P10865|FUS_NDVM Fusion glycoprotein F0 OS=Newcastle disease vi... 35.5 4.0 sp|P35936|FUS_NDVD Fusion glycoprotein F0 OS=Newcastle disease vi... 35.1 4.7 sp|Q9X1E2|MCP4_THEMA Methyl-accepting chemotaxis protein 4 OS=The... 35.1 5.2 sp|F1QC17|EMI1A_DANRE EMILIN-1-A OS=Danio rerio OX=7955 GN=emilin... 35.1 5.2 sp|Q6GN42|CTL4_XENLA Choline transporter-like protein 4 OS=Xenopu... 35.1 5.4 sp|P33612|FUS_NDVH3 Fusion glycoprotein F0 OS=Newcastle disease v... 35.1 5.4 sp|P33614|FUS_NDVL Fusion glycoprotein F0 OS=Newcastle disease vi... 34.7 5.9 sp|P33615|FUS_NDVQ Fusion glycoprotein F0 OS=Newcastle disease vi... 34.7 6.3 sp|P14623|FUS_NDVI Fusion glycoprotein F0 OS=Newcastle disease vi... 34.7 6.5 sp|P26628|FUS_NDVT Fusion glycoprotein F0 OS=Newcastle disease vi... 34.4 7.6 >sp|P0DTC2|SPIKE_SARS2 Spike glycoprotein OS=Severe acute respiratory syndrome coronavirus 2 OX=2697049 GN=S PE=1 SV=1 Length=1273 Score = 1706 bits (4418), Expect = 0.0, Method: Composition-based stats. Identities = 1273/1273 (100%), Positives = 1273/1273 (100%), Gaps = 0/1273 (0%) Query 1 MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFS 60 MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFS Sbjct 1 MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFS 60 Query 61 NVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIV 120 NVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIV Sbjct 61 NVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIV 120 Query 121 NNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLE 180 NNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLE Sbjct 121 NNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLE 180 Query 181 GKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT 240 GKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT Sbjct 181 GKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT 240 Query 241 LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETK 300 LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETK Sbjct 241 LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETK 300 Query 301 CTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISN 360 CTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISN Sbjct 301 CTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISN 360 Query 361 CVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIAD 420 CVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIAD Sbjct 361 CVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIAD 420 Query 421 YNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC 480 YNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC Sbjct 421 YNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC 480 Query 481 NGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVN 540 NGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVN Sbjct 481 NGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVN 540 Query 541 FNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITP 600 FNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITP Sbjct 541 FNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITP 600 Query 601 GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY 660 GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY Sbjct 601 GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY 660 Query 661 ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI 720 ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI Sbjct 661 ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI 720 Query 721 SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQE 780 SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQE Sbjct 721 SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQE 780 Query 781 VFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDC 840 VFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDC Sbjct 781 VFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDC 840 Query 841 LGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAM 900 LGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAM Sbjct 841 LGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAM 900 Query 901 QMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALN 960 QMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALN Sbjct 901 QMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALN 960 Query 961 TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA 1020 TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA Sbjct 961 TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA 1020 Query 1021 SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPA 1080 SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPA Sbjct 1021 SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPA 1080 Query 1081 ICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP 1140 ICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP Sbjct 1081 ICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP 1140 Query 1141 LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL 1200 LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL Sbjct 1141 LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL 1200 Query 1201 QELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDD 1260 QELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDD Sbjct 1201 QELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDD 1260 Query 1261 SEPVLKGVKLHYT 1273 SEPVLKGVKLHYT Sbjct 1261 SEPVLKGVKLHYT 1273 >sp|Q3LZX1|SPIKE_BCHK3 Spike glycoprotein OS=Bat coronavirus HKU3 OX=442736 GN=S PE=3 SV=1 Length=1242 Score = 1624 bits (4205), Expect = 0.0, Method: Composition-based stats. Identities = 965/1273 (76%), Positives = 1084/1273 (85%), Gaps = 35/1273 (3%) Query 1 MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFS 60 +F FL L C ++ + Q A +S RGVYY D +FRS VLH TQD FLPF S Sbjct 5 IFAFLANLAKAQEGCGIISRKPQPKMAQVSSSRRGVYYNDDIFRSDVLHLTQDYFLPFDS 64 Query 61 NVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIV 120 N+T + +++V FDNP+L F DGVYFA+TEKSN+IRGWIFG++ D+ TQS +IV Sbjct 65 NLTQYFSLNVDSDR-YTYFDNPILDFGDGVYFAATEKSNVIRGWIFGSSFDNTTQSAVIV 123 Query 121 NNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLE 180 NN+T+++I+VC F C +P V +W VY SA NCT++ V + F +D Sbjct 124 NNSTHIIIRVCNFNLCKEPMYTVSRGTQQNAW------VYQSAFNCTYDRVEKSFQLDTT 177 Query 181 GKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT 240 K GNFK+LRE+VFKN DG+ +Y +T +NL R LP GFS L+P++ LP GINIT ++ Sbjct 178 PKTGNFKDLREYVFKNRDGFLSVYQTYTAVNLPRGLPTGFSVLKPILKLPFGINITSYRV 237 Query 241 LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETK 300 ++A+ ++S + +AAYYVG L+ TF+L++NENGTITDAVDC+ +PL+E K Sbjct 238 VMAMF------SQTTSNFLPESAAYYVGNLKYSTFMLRFNENGTITDAVDCSQNPLAELK 291 Query 301 CTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISN 360 CT+K+F V+KGIYQTSNFRV PT+ ++RFPNITN CPF +VFNATRF +VYAW R +IS+ Sbjct 292 CTIKNFNVDKGIYQTSNFRVSPTQEVIRFPNITNRCPFDKVFNATRFPNVYAWERTKISD 351 Query 361 CVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIAD 420 CVADY+VLYNS SFSTFKCYGVSP+KL DLCFT+VYAD+F+IR EVRQ+APG+TG IAD Sbjct 352 CVADYTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGETGVIAD 411 Query 421 YNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC 480 YNYKLPDDFTGCVIAWN+ D+ NY YR RK+ LKPFERD+S++ Sbjct 412 YNYKLPDDFTGCVIAWNTAKHDTG-----NYYYRSHRKTKLKPFERDLSSD--------- 457 Query 481 NGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVN 540 N + L +Y F P V YQ RVVVLSFELL+APATVCGPK ST LVKN+CVN Sbjct 458 ----DGNGVYTLSTYDFNPNVPVAYQATRVVVLSFELLNAPATVCGPKLSTELVKNQCVN 513 Query 541 FNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITP 600 FNFNGL GTGVLT S+K+F FQQFGRD +D TD+VRDPQTLEILDI+PCSFGGVSVITP Sbjct 514 FNFNGLKGTGVLTSSSKRFQSFQQFGRDTSDFTDSVRDPQTLEILDISPCSFGGVSVITP 573 Query 601 GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY 660 GTN S++VAVLYQDVNCT+VP AI ADQLTP WRVYSTG NVFQT+AGCLIGAEHVN SY Sbjct 574 GTNASSEVAVLYQDVNCTDVPTAIRADQLTPAWRVYSTGVNVFQTQAGCLIGAEHVNASY 633 Query 661 ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI 720 ECDIPIGAGICASY T + RS +SI+AYTMSLGAENS+AY+NNSIAIPTNF+I Sbjct 634 ECDIPIGAGICASYHTASV----LRSTGQKSIVAYTMSLGAENSIAYANNSIAIPTNFSI 689 Query 721 SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQE 780 SVTTE++PVSM KT+VDCTMYICGDS ECSNLLLQYGSFCTQLNRALTGIA+EQDKNTQE Sbjct 690 SVTTEVMPVSMAKTAVDCTMYICGDSLECSNLLLQYGSFCTQLNRALTGIAIEQDKNTQE 749 Query 781 VFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDC 840 VFAQVKQ+YKTP IKDFGGFNFSQILPDPSKP+KRSFIEDLLFNKVTLADAGF+KQYGDC Sbjct 750 VFAQVKQMYKTPAIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLADAGFMKQYGDC 809 Query 841 LGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAM 900 LGD++ARDLICAQKFNGLTVLPPLLTDEM+A YT+AL++GT T+GWTFGAGAALQIPFAM Sbjct 810 LGDVSARDLICAQKFNGLTVLPPLLTDEMVAAYTAALVSGTATAGWTFGAGAALQIPFAM 869 Query 901 QMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALN 960 QMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQ+SLSSTASALGKLQDVVNQNAQALN Sbjct 870 QMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQESLSSTASALGKLQDVVNQNAQALN 929 Query 961 TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA 1020 TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA Sbjct 930 TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA 989 Query 1021 SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPA 1080 SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVP+QEKNFTTAPA Sbjct 990 SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPSQEKNFTTAPA 1049 Query 1081 ICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP 1140 ICH+GKA+FPREGVFVSNGT WF+TQRNFY PQ+ITTDNTFVSGNCDVVIGI+NNTVYDP Sbjct 1050 ICHEGKAYFPREGVFVSNGTSWFITQRNFYSPQLITTDNTFVSGNCDVVIGIINNTVYDP 1109 Query 1141 LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL 1200 LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL Sbjct 1110 LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL 1169 Query 1201 QELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDD 1260 QELGKYEQYIKWPWY+WLGFIAGLIAIVMVTI+LCCMTSCCSCLKG CSCGSCCKFDEDD Sbjct 1170 QELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDD 1229 Query 1261 SEPVLKGVKLHYT 1273 SEPVLKGVKLHYT Sbjct 1230 SEPVLKGVKLHYT 1242 >sp|P59594|SPIKE_SARS Spike glycoprotein OS=Severe acute respiratory syndrome coronavirus OX=694009 GN=S PE=1 SV=1 Length=1255 Score = 1624 bits (4204), Expect = 0.0, Method: Composition-based stats. Identities = 971/1277 (76%), Positives = 1108/1277 (87%), Gaps = 26/1277 (2%) Query 1 MFVFLVLLPLVSSQCVNLTTRTQ--LPPAYT--NSFTRGVYYPDKVFRSSVLHSTQDLFL 56 MF+FL+ L L S ++ T P YT S RGVYYPD++FRS L+ TQDLFL Sbjct 1 MFIFLLFLTLTSGSDLDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFL 60 Query 57 PFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQS 116 PF+SNVT FH I+ F NPV+PF DG+YFA+TEKSN++RGW+FG+T+++K+QS Sbjct 61 PFYSNVTGFHTIN-------HTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQS 113 Query 117 LLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFL 176 ++I+NN+TNVVI+ C F+ C++PF V ++ ++ +A NCTFEY+S F Sbjct 114 VIIINNSTNVVIRACNFELCDNPFFAVSK----PMGTQTHTMIFDNAFNCTFEYISDAFS 169 Query 177 MDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINIT 236 +D+ K GNFK+LREFVFKN DG+ +Y + PI++VRDLP GF+ L+P+ LP+GINIT Sbjct 170 LDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINIT 229 Query 237 RFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPL 296 F+ +L + +P W AAAY+VGYL+P TF+LKY+ENGTITDAVDC+ +PL Sbjct 230 NFRAIL----TAFSPAQDI--WGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPL 283 Query 297 SETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRK 356 +E KC++KSF ++KGIYQTSNFRV P+ +VRFPNITNLCPFGEVFNAT+F SVYAW RK Sbjct 284 AELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVYAWERK 343 Query 357 RISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTG 416 +ISNCVADYSVLYNS FSTFKCYGVS TKLNDLCF+NVYADSFV++GD+VRQIAPGQTG Sbjct 344 KISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTG 403 Query 417 KIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAG 476 IADYNYKLPDDF GCV+AWN+ N+D+ GNYNY YR R L+PFERDIS + Sbjct 404 VIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPD 463 Query 477 STPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKN 536 PC NCY+PL YGF T G+GYQPYRVVVLSFELL+APATVCGPK ST+L+KN Sbjct 464 GKPCTP-PALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKN 522 Query 537 KCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVS 596 +CVNFNFNGLTGTGVLT S+K+F PFQQFGRD++D TD+VRDP+T EILDI+PCSFGGVS Sbjct 523 QCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVS 582 Query 597 VITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHV 656 VITPGTN S++VAVLYQDVNCT+V AIHADQLTP WR+YSTG+NVFQT+AGCLIGAEHV Sbjct 583 VITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHV 642 Query 657 NNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPT 716 + SYECDIPIGAGICASY T + RS + +SI+AYTMSLGA++S+AYSNN+IAIPT Sbjct 643 DTSYECDIPIGAGICASYHTVSL----LRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPT 698 Query 717 NFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDK 776 NF+IS+TTE++PVSM KTSVDC MYICGDSTEC+NLLLQYGSFCTQLNRAL+GIA EQD+ Sbjct 699 NFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDR 758 Query 777 NTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQ 836 NT+EVFAQVKQ+YKTP +K FGGFNFSQILPDP KP+KRSFIEDLLFNKVTLADAGF+KQ Sbjct 759 NTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQ 818 Query 837 YGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQI 896 YG+CLGDI ARDLICAQKFNGLTVLPPLLTD+MIA YT+AL++GT T+GWTFGAGAALQI Sbjct 819 YGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQI 878 Query 897 PFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNA 956 PFAMQMAYRFNGIGVTQNVLYENQK IANQFN AI +IQ+SL++T++ALGKLQDVVNQNA Sbjct 879 PFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNA 938 Query 957 QALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAA 1016 QALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAA Sbjct 939 QALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAA 998 Query 1017 EIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFT 1076 EIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQ+APHGVVFLHVTYVP+QE+NFT Sbjct 999 EIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFT 1058 Query 1077 TAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNT 1136 TAPAICH+GKA+FPREGVFV NGT WF+TQRNF+ PQIITTDNTFVSGNCDVVIGI+NNT Sbjct 1059 TAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNT 1118 Query 1137 VYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNES 1196 VYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNES Sbjct 1119 VYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNES 1178 Query 1197 LIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKF 1256 LIDLQELGKYEQYIKWPWY+WLGFIAGLIAIVMVTI+LCCMTSCCSCLKG CSCGSCCKF Sbjct 1179 LIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKF 1238 Query 1257 DEDDSEPVLKGVKLHYT 1273 DEDDSEPVLKGVKLHYT Sbjct 1239 DEDDSEPVLKGVKLHYT 1255 >sp|Q3I5J5|SPIKE_BCRP3 Spike glycoprotein OS=Bat coronavirus Rp3/2004 OX=349344 GN=S PE=1 SV=1 Length=1241 Score = 1615 bits (4183), Expect = 0.0, Method: Composition-based stats. Identities = 956/1273 (75%), Positives = 1080/1273 (85%), Gaps = 36/1273 (3%) Query 1 MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFS 60 + FL L C ++ + Q A +S RGVYY D +FRS+VLH TQD FLPF S Sbjct 5 ILAFLASLAKAQEGCGIISRKPQPKMAQVSSSRRGVYYNDDIFRSNVLHLTQDYFLPFDS 64 Query 61 NVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIV 120 N+T + +++V FDNP+L F DGVYFA+TEKSN+IRGWIFG+T D+ TQS +IV Sbjct 65 NLTQYFSLNVDSDR-FTYFDNPILDFGDGVYFAATEKSNVIRGWIFGSTFDNTTQSAVIV 123 Query 121 NNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLE 180 NN+T+++I+VC F C +P V SW VY SA NCT++ V + F +D Sbjct 124 NNSTHIIIRVCNFNLCKEPMYTVSRGAQQSSW------VYQSAFNCTYDRVEKSFQLDTA 177 Query 181 GKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT 240 K GNFK+LRE+VFKN DG+ +Y +T +NL R LP GFS L P++ LP GINIT ++ Sbjct 178 PKTGNFKDLREYVFKNRDGFLSVYQTYTAVNLPRGLPIGFSVLRPILKLPFGINITSYRV 237 Query 241 LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETK 300 ++A+ ++S + +AAYYVG L+ TF+L +NENGTIT+A+DCA +PL+E K Sbjct 238 VMAMF------SQTTSNFLPESAAYYVGNLKYTTFMLSFNENGTITNAIDCAQNPLAELK 291 Query 301 CTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISN 360 CT+K+F V KGIYQTSNFRV PT+ ++RFPNITN CPF +VFNATRF +VYAW R +IS+ Sbjct 292 CTIKNFNVSKGIYQTSNFRVSPTQEVIRFPNITNRCPFDKVFNATRFPNVYAWERTKISD 351 Query 361 CVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIAD 420 CVADY+VLYNS SFSTFKCYGVSP+KL DLCFT+VYAD+F+IR EVRQ+APG+TG IAD Sbjct 352 CVADYTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGETGVIAD 411 Query 421 YNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC 480 YNYKLPDDFTGCVIAWN+ D Y YR RK+ LKPFERD+S++ Sbjct 412 YNYKLPDDFTGCVIAWNTAKQDQG-----QYYYRSHRKTKLKPFERDLSSDE-------- 458 Query 481 NGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVN 540 N L +Y F P+ V YQ RVVVLSFELL+APATVCGPK ST LVKN+CVN Sbjct 459 ------NGVRTLSTYDFYPSVPVAYQATRVVVLSFELLNAPATVCGPKLSTQLVKNQCVN 512 Query 541 FNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITP 600 FNFNGL GTGVLTES+K+F FQQFGRD +D TD+VRDPQTLEILDI+PCSFGGVSVITP Sbjct 513 FNFNGLKGTGVLTESSKRFQSFQQFGRDTSDFTDSVRDPQTLEILDISPCSFGGVSVITP 572 Query 601 GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY 660 GTN S++VAVLYQDVNCT+VP AIHADQLTP WRVYSTG+NVFQT+AGCLIGAEHVN SY Sbjct 573 GTNASSEVAVLYQDVNCTDVPAAIHADQLTPAWRVYSTGTNVFQTQAGCLIGAEHVNASY 632 Query 661 ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI 720 ECDIPIGAGICASY T + RSV +SI+AYTMSLGAENS+AY+NNSIAIPTNF+I Sbjct 633 ECDIPIGAGICASYHTAST----LRSVGQKSIVAYTMSLGAENSIAYANNSIAIPTNFSI 688 Query 721 SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQE 780 SVTTE++PVSM KTSVDCTMYICGDS ECSNLLLQYGSFCTQLNRAL+GIA+EQDKNTQE Sbjct 689 SVTTEVMPVSMAKTSVDCTMYICGDSLECSNLLLQYGSFCTQLNRALSGIAIEQDKNTQE 748 Query 781 VFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDC 840 VFAQVKQ+YKTP IKDFGGFNFSQILPDPSKP+KRSFIEDLLFNKVTLADAGF+KQYG+C Sbjct 749 VFAQVKQMYKTPAIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLADAGFMKQYGEC 808 Query 841 LGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAM 900 LGDI+ARDLICAQKFNGLTVLPPLLTDEMIA YT+AL++GT T+GWTFGAG+ALQIPFAM Sbjct 809 LGDISARDLICAQKFNGLTVLPPLLTDEMIAAYTAALVSGTATAGWTFGAGSALQIPFAM 868 Query 901 QMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALN 960 QMAYRFNGIGVTQNVLYENQK IANQFN AI +IQ+SL++T++ALGKLQDVVNQNAQALN Sbjct 869 QMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALN 928 Query 961 TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA 1020 TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA Sbjct 929 TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA 988 Query 1021 SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPA 1080 SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQ+APHGVVFLHVTYVP+QE+NFTTAPA Sbjct 989 SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPA 1048 Query 1081 ICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP 1140 ICH+GKA+FPREGVFVSNGT WF+TQRNFY PQIITTDNTFV+G+CDVVIGI+NNTVYDP Sbjct 1049 ICHEGKAYFPREGVFVSNGTSWFITQRNFYSPQIITTDNTFVAGSCDVVIGIINNTVYDP 1108 Query 1141 LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL 1200 LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL Sbjct 1109 LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL 1168 Query 1201 QELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDD 1260 QELGKYEQYIKWPWY+WLGFIAGLIAIVMVTI+LCCMTSCCSCLKG CSCGSCCKFDEDD Sbjct 1169 QELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDD 1228 Query 1261 SEPVLKGVKLHYT 1273 SEPVLKGVKLHYT Sbjct 1229 SEPVLKGVKLHYT 1241 >sp|Q0Q475|SPIKE_BC279 Spike glycoprotein OS=Bat coronavirus 279/2005 OX=389167 GN=S PE=3 SV=1 Length=1241 Score = 1613 bits (4177), Expect = 0.0, Method: Composition-based stats. Identities = 951/1275 (75%), Positives = 1079/1275 (85%), Gaps = 38/1275 (3%) Query 1 MFVFLVLLPLVSSQ--CVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPF 58 + +F +L L +Q C ++ + Q +S RGVYY D +FRS VLH TQD FLPF Sbjct 3 VLIFALLFSLAKAQEGCGIISRKPQPKMEKVSSSRRGVYYNDDIFRSDVLHLTQDYFLPF 62 Query 59 FSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLL 118 SN+T + ++++ +N FDNP+L F DGVYFA+TEKSN+IRGWIFG++ D+ TQS + Sbjct 63 DSNLTQYFSLNID-SNKYTYFDNPILDFGDGVYFAATEKSNVIRGWIFGSSFDNTTQSAI 121 Query 119 IVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMD 178 IVNN+T+++I+VC F C +P V SW VY SA NCT++ V + F +D Sbjct 122 IVNNSTHIIIRVCNFNLCKEPMYTVSKGTQQSSW------VYQSAFNCTYDRVEKSFQLD 175 Query 179 LEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRF 238 K GNFK+LRE+VFKN DG+ +Y +T +NL R P GFS L P++ LP GINIT + Sbjct 176 TAPKTGNFKDLREYVFKNRDGFLSVYQTYTAVNLPRGFPAGFSVLRPILKLPFGINITSY 235 Query 239 QTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSE 298 + ++ + + +S + +AAYYVG L+ TF+L +NENGTITDAVDC+ +PL+E Sbjct 236 RVVMTMFSQF------NSNFLPESAAYYVGNLKYTTFMLSFNENGTITDAVDCSQNPLAE 289 Query 299 TKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRI 358 KCT+K+F V KGIYQTSNFRV PT+ +VRFPNITN CPF +VFNA+RF +VYAW R +I Sbjct 290 LKCTIKNFNVSKGIYQTSNFRVTPTQEVVRFPNITNRCPFDKVFNASRFPNVYAWERTKI 349 Query 359 SNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKI 418 S+CVADY+VLYNS SFSTFKCYGVSP+KL DLCFT+VYAD+F+IR EVRQ+APG+TG I Sbjct 350 SDCVADYTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGETGVI 409 Query 419 ADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGST 478 ADYNYKLPDDFTGCVIAWN+ D Y YR +RK LKPFERD+S++ Sbjct 410 ADYNYKLPDDFTGCVIAWNTAQQDQG-----QYYYRSYRKEKLKPFERDLSSDE------ 458 Query 479 PCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKC 538 N + L +Y F P+ V YQ RVVVLSFELL+APATVCGPK ST LVKN+C Sbjct 459 --------NGVYTLSTYDFYPSIPVEYQATRVVVLSFELLNAPATVCGPKLSTQLVKNQC 510 Query 539 VNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVI 598 VNFNFNGL GTGVLT S+K+F FQQFGRD +D TD+VRDPQTLEILDI+PCSFGGVSVI Sbjct 511 VNFNFNGLRGTGVLTTSSKRFQSFQQFGRDTSDFTDSVRDPQTLEILDISPCSFGGVSVI 570 Query 599 TPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNN 658 TPGTN S++VAVLYQDVNCT+VP +IHADQLTP WRVYSTG NVFQT+AGCLIGAEHVN Sbjct 571 TPGTNASSEVAVLYQDVNCTDVPTSIHADQLTPAWRVYSTGVNVFQTQAGCLIGAEHVNA 630 Query 659 SYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNF 718 SYECDIPIGAGICASY T + RS +SI+AYTMSLGAENS+AY+NNSIAIPTNF Sbjct 631 SYECDIPIGAGICASYHTASV----LRSTGQKSIVAYTMSLGAENSIAYANNSIAIPTNF 686 Query 719 TISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNT 778 +ISVTTE++PVS+ KTSVDCTMYICGDS ECSNLLLQYGSFCTQLNRALTGIA+EQDKNT Sbjct 687 SISVTTEVMPVSIAKTSVDCTMYICGDSLECSNLLLQYGSFCTQLNRALTGIAIEQDKNT 746 Query 779 QEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYG 838 QEVFAQVKQ+YKTP IKDFGGFNFSQILPDPSKP+KRSFIEDLLFNKVTLADAGF+KQYG Sbjct 747 QEVFAQVKQMYKTPAIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLADAGFMKQYG 806 Query 839 DCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPF 898 +CLGDI+ARDLICAQKFNGLTVLPPLLTDEMIA YT+AL++GT T+GWTFGAG+ALQIPF Sbjct 807 ECLGDISARDLICAQKFNGLTVLPPLLTDEMIAAYTAALVSGTATAGWTFGAGSALQIPF 866 Query 899 AMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQA 958 AMQMAYRFNGIGVTQNVLYENQK IANQFN AI +IQ+SL++T++ALGKLQDVVN NAQA Sbjct 867 AMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNDNAQA 926 Query 959 LNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEI 1018 LNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEI Sbjct 927 LNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEI 986 Query 1019 RASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTA 1078 RASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQ+APHGVVFLHVTYVP+QE+NFTTA Sbjct 987 RASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTA 1046 Query 1079 PAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVY 1138 PAICH+GKA+FPREGVFVSNGT WF+TQRNFY PQIITTDNTFV+GNCDVVIGI+NNTVY Sbjct 1047 PAICHEGKAYFPREGVFVSNGTSWFITQRNFYSPQIITTDNTFVAGNCDVVIGIINNTVY 1106 Query 1139 DPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLI 1198 DPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLI Sbjct 1107 DPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLI 1166 Query 1199 DLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDE 1258 DLQELGKYEQYIKWPWY+WLGFIAGLIAIVMVTI+LCCMTSCCSCLKG CSCGSCCKFDE Sbjct 1167 DLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDE 1226 Query 1259 DDSEPVLKGVKLHYT 1273 DDSEPVLKGVKLHYT Sbjct 1227 DDSEPVLKGVKLHYT 1241 >sp|P11225|SPIKE_CVMJH Spike glycoprotein OS=Murine coronavirus (strain JHM) OX=11144 GN=S PE=1 SV=1 Length=1235 Score = 1317 bits (3408), Expect = 0.0, Method: Composition-based stats. Identities = 407/1336 (30%), Positives = 615/1336 (46%), Gaps = 169/1336 (13%) Query 1 MFVFLVLLP--------LVSSQCVNLTTRTQLPPAYTN-----SFTRGVYYP-DKVFRSS 46 +FVF++LLP Q VN P+ + S RG YY D+V+ ++ Sbjct 2 LFVFILLLPSCLGYIGDFRCIQTVNYNGNNASAPSISTEAVDVSKGRGTYYVLDRVYLNA 61 Query 47 VLHSTQDLFLPFFSNVTWFHAIHVSGTN--GTKRFDNPVL-PFNDGVYF----------- 92 L T + P + + + + ++GTN F P L FNDG++ Sbjct 62 TLLLTG--YYPV--DGSNYRNLALTGTNTLSLTWFKPPFLSEFNDGIFAKVQNLKTNTPT 117 Query 93 -ASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKS 151 A++ I+ G +FG T S T L NN ++ VC + C P+ + N Sbjct 118 GATSYFPTIVIGSLFGNT--SYTVVLEPYNNI--IMASVCTYTICQLPYTPCKPNTNGNR 173 Query 152 -----WMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSK 206 + + + N TF V+ P+L F F G F Y Sbjct 174 VIGFWHTDVKPPICLLKRNFTFN-VNAPWLY--------------FHFYQQGGTFYAYYA 218 Query 207 HTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYY 266 P SA L + IG +T++ L + TP + + A Y+ Sbjct 219 DKP-----------SATTFLFSVYIGDILTQYFVLPFI----CTP----TAGSTLAPLYW 259 Query 267 VGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI 326 V L R +L +NE G IT AVDCA +SE KC +S G+Y S + VQP + Sbjct 260 VTPLLKRQYLFNFNEKGVITSAVDCASSYISEIKCKTQSLLPSTGVYDLSGYTVQPVGVV 319 Query 327 VR-FPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPT 385 R PN+ + C E A S W R+ NC + S L + C + + Sbjct 320 YRRVPNLPD-CKIEEWLTAKSVPSPLNWERRTFQNCNFNLSSLLRYVQAESLSCNNIDAS 378 Query 386 KLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKV 445 K+ +CF +V D F I + G +G + NYK+ T C + Sbjct 379 KVYGMCFGSVSVDKFAIPRSRQIDLQIGNSGFLQTANYKIDTAATSCQL----------- 427 Query 446 GGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGY 505 Y K+N+ + +N + YGF+ + Sbjct 428 -------YYSLPKNNVT--------------------INNYNPSSWNRRYGFKVND---- 456 Query 506 QPYRVVVLSFELLHA--PATVCGPK---KSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL 560 R + + LL+ T C +T + CV ++ G+TG GV E + Sbjct 457 ---RCQIFANILLNGINSGTTCSTDLQLPNTEVATGVCVRYDLYGITGQGVFKEVKADYY 513 Query 561 -PFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTE 619 +Q D+ + RD T + I C G VS + + A+LY+++NC+ Sbjct 514 NSWQALLYDVNGNLNGFRDLTTNKTYTIRSCYSGRVSAAYH--KEAPEPALLYRNINCSY 571 Query 620 VPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY--ECDIPIGAGICASYQTQ 677 V + + P N F + GC++ A++ + C++ +GAG+C Y Sbjct 572 VFTNNISREENPL--------NYFDSYLGCVVNADNRTDEALPNCNLRMGAGLCVDYSKS 623 Query 678 TNSPRRARSVASQSIIAYTMSLGAENSVAYSNN--SIAIPTNFTISVTTEILPVSMTKTS 735 + R + + M + +SV + IPTNFTI E + + K + Sbjct 624 RRARRSVSTGYRLTTFEPYMPMLVNDSVQSVGGLYEMQIPTNFTIGHHEEFIQIRAPKVT 683 Query 736 VDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQ-IYKTPPI 794 +DC ++CGD+ C L++YGSFC +N L + D +V + + Q + + + Sbjct 684 IDCAAFVCGDNAACRQQLVEYGSFCDNVNAILNEVNNLLDNMQLQVASALMQGVTISSRL 743 Query 795 KD-----FGGFNFSQILP-----------DPSKPSKRSFIEDLLFNKVTLADAGFIKQYG 838 D NFS +L PS RS IEDLLF+KV L+D GF++ Y Sbjct 744 PDGISGPIDDINFSPLLGCIGSTCAEDGNGPSAIRGRSAIEDLLFDKVKLSDVGFVEAYN 803 Query 839 DCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPF 898 +C G RDL+C Q FNG+ VLPP+L++ I+ YT+ A + WT AG +PF Sbjct 804 NCTGGQEVRDLLCVQSFNGIKVLPPVLSESQISGYTAGATAAAMFPPWTAAAG----VPF 859 Query 899 AMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQA 958 ++ + YR NG+GVT NVL ENQK+IA+ FN+A+G IQ+ +T SALGK+Q VVN NA+A Sbjct 860 SLNVQYRINGLGVTMNVLSENQKMIASAFNNALGAIQEGFDATNSALGKIQSVVNANAEA 919 Query 959 LNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEI 1018 LN L+ QLS+ FGAIS+ L +IL+RLD VEA+ QIDRLI GRL +L Y+++QL + I Sbjct 920 LNNLLNQLSNRFGAISASLQEILTRLDAVEAKAQIDRLINGRLTALNAYISKQLSDSTLI 979 Query 1019 RASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTA 1078 + SA A K++ECV Q+ R++FCG G H++S Q+AP+G+ F+H +YVP K + Sbjct 980 KFSAAQAIEKVNECVKSQTTRINFCGNGNHILSLVQNAPYGLCFIHFSYVPTSFKTANVS 1039 Query 1079 PAICHDG-KAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTV 1137 P +C G + P+ G FV + W T N+Y P+ IT N+ +C V Sbjct 1040 PGLCISGDRGLAPKAGYFVQDNGEWKFTGSNYYYPEPITDKNSVAMISCAVNYTKAPEVF 1099 Query 1138 YDPLQPELDSFKEELDKYFKNHTSPDVDLG-DISGINASVVNIQKEIDRLNEVAKNLNES 1196 + P L FKEELDK+FKN TS DL D +N + +++ E++R+ + K LNES Sbjct 1100 LNNSIPNLPDFKEELDKWFKNQTSIAPDLSLDFEKLNVTFLDLTYEMNRIQDAIKKLNES 1159 Query 1197 LIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCK- 1255 I+L+E+G YE Y+KWPWY+WL + GL + + ++ CGSCC Sbjct 1160 YINLKEVGTYEMYVKWPWYVWL--LIGLAGVAVCVLLFFICCCTGCGSCCFRKCGSCCDE 1217 Query 1256 FDEDDSEPVLKGVKLH 1271 + V+ + H Sbjct 1218 YGGHQDSIVIHNISAH 1233 >sp|P11224|SPIKE_CVMA5 Spike glycoprotein OS=Murine coronavirus (strain A59) OX=11142 GN=S PE=1 SV=2 Length=1324 Score = 1273 bits (3295), Expect = 0.0, Method: Composition-based stats. Identities = 395/1379 (29%), Positives = 610/1379 (44%), Gaps = 166/1379 (12%) Query 1 MFVFLVLLP--------LVSSQCVNLTTRTQLPPAYTN-----SFTRGVYYP-DKVFRSS 46 +FVF++ LP Q VN P+ + S G YY D+V+ ++ Sbjct 2 LFVFILFLPSCLGYIGDFRCIQLVNSNGANVSAPSISTETVEVSQGLGTYYVLDRVYLNA 61 Query 47 VLHSTQDLFLPFFSNVTWFHAIHVSGTNG--TKRFDNPVL-PFNDGVYF----------- 92 L T + P + + F + + GTN F P L FNDG++ Sbjct 62 TLLLTG--YYPV--DGSKFRNLALRGTNSVSLSWFQPPYLNQFNDGIFAKVQNLKTSTPS 117 Query 93 -ASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKS 151 A+ I+ G +FG T S T + N ++ VC++ C P+ + N Sbjct 118 GATAYFPTIVIGSLFGYT--SYTVVIEPYNGV--IMASVCQYTICQLPYTDCKPNTNGNK 173 Query 152 W-----MESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSK 206 + + + N T + F F F G F Y Sbjct 174 LIGFWHTDVKPPICVLKRNFTLNVNADAF---------------YFHFYQHGGTFYAYYA 218 Query 207 HTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYY 266 P SA L + IG +T++ L + P + + A Y+ Sbjct 219 DKP-----------SATTFLFSVYIGDILTQYYVLPFI----CNP----TAGSTFAPRYW 259 Query 267 VGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI 326 V L R +L +N+ G IT AVDCA SE KC +S G+Y+ S + VQP + Sbjct 260 VTPLVKRQYLFNFNQKGVITSAVDCASSYTSEIKCKTQSMLPSTGVYELSGYTVQPVGVV 319 Query 327 VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTK 386 R C E A S W RK NC + S L + C + +K Sbjct 320 YRRVANLPACNIEEWLTARSVPSPLNWERKTFQNCNFNLSSLLRYVQAESLFCNNIDASK 379 Query 387 LNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWN-SNNLDSKV 445 + CF ++ D F + + G +G + NYK+ T C + + N + Sbjct 380 VYGRCFGSISVDKFAVPRSRQVDLQLGNSGFLQTANYKIDTAATSCQLHYTLPKNNVTIN 439 Query 446 GGNYNYLYRLFRKSNLKPFERDISTEIY-------QAGSTPC-NGVEGFNCYFPLQSYGF 497 N + R + ++ F ++ +Y ++ PC C + Sbjct 440 NHNPSSWNRRYGFNDAGVFGKNQHDVVYAQQCFTVRSSYCPCAQPDIVSPCTTQTKPKSA 499 Query 498 QPTNGVGYQPY-----------------------------------RVVVLSFELLHA-- 520 G + R + + LL+ Sbjct 500 FVNVGDHCEGLGVLEDNCGNADPHKGCICANNSFIGWSHDTCLVNDRCQIFANILLNGIN 559 Query 521 PATVCGPK---KSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAV 576 T C +T +V CV ++ G+TG GV E + +Q D+ + Sbjct 560 SGTTCSTDLQLPNTEVVTGICVKYDLYGITGQGVFKEVKADYYNSWQTLLYDVNGNLNGF 619 Query 577 RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVY 636 RD T + I C G VS + + A+LY+++NC+ V + + P Sbjct 620 RDLTTNKTYTIRSCYSGRVSAAFH--KDAPEPALLYRNINCSYVFSNNISREENPL---- 673 Query 637 STGSNVFQTRAGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIA 694 N F + GC++ A++ + CD+ +GAG+C Y + R + + Sbjct 674 ----NYFDSYLGCVVNADNRTDEALPNCDLRMGAGLCVDYSKSRRAHRSVSTGYRLTTFE 729 Query 695 YTMSLGAENSVAYSNN--SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNL 752 + +SV + + IPTNFTI E + K ++DC ++CGD+T C Sbjct 730 PYTPMLVNDSVQSVDGLYEMQIPTNFTIGHHEEFIQTRSPKVTIDCAAFVCGDNTACRQQ 789 Query 753 LLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQ-IYKTPPIKD-----FGGFNFSQIL 806 L++YGSFC +N L + D +V + + Q + + + D NFS +L Sbjct 790 LVEYGSFCVNVNAILNEVNNLLDNMQLQVASALMQGVTISSRLPDGISGPIDDINFSPLL 849 Query 807 P-----------DPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKF 855 PS RS IEDLLF+KV L+D GF++ Y +C G RDL+C Q F Sbjct 850 GCIGSTCAEDGNGPSAIRGRSAIEDLLFDKVKLSDVGFVEAYNNCTGGQEVRDLLCVQSF 909 Query 856 NGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNV 915 NG+ VLPP+L++ I+ YT+ A + W+ AG +PF++ + YR NG+GVT NV Sbjct 910 NGIKVLPPVLSESQISGYTTGATAAAMFPPWSAAAG----VPFSLSVQYRINGLGVTMNV 965 Query 916 LYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISS 975 L ENQK+IA+ FN+A+G IQD +T SALGK+Q VVN NA+ALN L+ QLS+ FGAIS+ Sbjct 966 LSENQKMIASAFNNALGAIQDGFDATNSALGKIQSVVNANAEALNNLLNQLSNRFGAISA 1025 Query 976 VLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG 1035 L +IL+RL+ VEA+ QIDRLI GRL +L Y+++QL + I+ SA A K++ECV Sbjct 1026 SLQEILTRLEAVEAKAQIDRLINGRLTALNAYISKQLSDSTLIKVSAAQAIEKVNECVKS 1085 Query 1036 QSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGV 1094 Q+ R++FCG G H++S Q+AP+G+ F+H +YVP +P +C G + P+ G Sbjct 1086 QTTRINFCGNGNHILSLVQNAPYGLYFIHFSYVPISFTTANVSPGLCISGDRGLAPKAGY 1145 Query 1095 FVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDK 1154 FV + W T ++Y P+ IT N+ + +C V + P FKEELDK Sbjct 1146 FVQDDGEWKFTGSSYYYPEPITDKNSVIMSSCAVNYTKAPEVFLNTSIPNPPDFKEELDK 1205 Query 1155 YFKNHTSPDVDLG-DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWP 1213 +FKN TS DL D +N +++++ E++R+ + K LNES I+L+E+G YE Y+KWP Sbjct 1206 WFKNQTSIAPDLSLDFEKLNVTLLDLTYEMNRIQDAIKKLNESYINLKEVGTYEMYVKWP 1265 Query 1214 WYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCK-FDEDDSEPVLKGVKLH 1271 WY+WL + GL + + ++ CG+CC + V+ + H Sbjct 1266 WYVWL--LIGLAGVAVCVLLFFICCCTGCGSCCFKKCGNCCDEYGGHQDSIVIHNISSH 1322 >sp|A3EXG6|SPIKE_BCHK9 Spike glycoprotein OS=Bat coronavirus HKU9 OX=694006 GN=S PE=1 SV=1 Length=1274 Score = 1200 bits (3105), Expect = 0.0, Method: Composition-based stats. Identities = 417/1287 (32%), Positives = 646/1287 (50%), Gaps = 106/1287 (8%) Query 29 TNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFH-AIHVSGTNGTKRFDNPVLPFN 87 + V PD S Q+LF+ SN + +G NG ++ ++P + Sbjct 38 IKAKVSNVLLPDPYIAYSGQTLRQNLFMADMSNTILYPVTPPANGANGGFIYNTSIIPVS 97 Query 88 DGVYF---------ASTEKSNIIRGWIFGTTLDSKTQSLLIV-------------NNATN 125 G++ +S G FG T ++ ++LI+ N TN Sbjct 98 AGLFVNTWMYRQPASSRAYCQEPFGVAFGDTFENDRIAILIMAPDNLGSWSAVAPRNQTN 157 Query 126 VVIKVC-EFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQG 184 + + VC C +P G S++ + V +N+C +V+ F +++ + Sbjct 158 IYLLVCSNATLCINP--GFNRWGPAGSFIAPDALV-DHSNSC---FVNNTFSVNISTSRI 211 Query 185 NFKNLREFVFKNIDGYFKIY-SKHTPI-NLVRDLPQGFSALEPLVDLPIGINITRFQTLL 242 + F+FK DG IY S P N +G + + LP+G N+ R Q Sbjct 212 SLA----FLFK--DGDLLIYHSGWLPTSNFEHGFSRGSHPMTYFMSLPVGGNLPRAQFFQ 265 Query 243 ALHRS-YLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKC 301 ++ RS + GD T +V +L R L+ Y NG++ +A DCA E C Sbjct 266 SIVRSNAIDKGDGMC--TNFDVNLHVAHLINRDLLVSYFNNGSVANAADCADSAAEELYC 323 Query 302 TLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLC--PFGEVFNATRFASVYAWNRKRIS 359 SF G+Y S +R Q VR + C P+ + + W R + Sbjct 324 VTGSFDPPTGVYPLSRYRAQ-VAGFVRVTQRGSYCTPPYSVLQDP---PQPVVWRRYMLY 379 Query 360 NCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIA 419 +CV D++V+ +S +CYGVSP +L +C+ +V D I + + + Sbjct 380 DCVFDFTVVVDSLPTHQLQCYGVSPRRLASMCYGSVTLDVMRINETHLNNLFNRVPDTFS 439 Query 420 DYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTP 479 YNY LPD+F GC+ A+ N+ Y + + +KP R Q+ S Sbjct 440 LYNYALPDNFYGCLHAFYLNSTAP---------YAVANRFPIKPGGR-------QSNSAF 483 Query 480 CNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCV 539 + V Y P Y + V++ + VC T ++ ++CV Sbjct 484 IDTVINAAHYSPFSY------------VYGLAVITLKPAAGSKLVCPVANDTVVITDRCV 531 Query 540 NFNFNGLTGTGVLTESNKKFLP-FQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVI 598 +N G TGTGVL+++ +P + F T V T I PC VSV Sbjct 532 QYNLYGYTGTGVLSKNTSLVIPDGKVFTASSTGTIIGVSINST--TYSIMPCVTVPVSV- 588 Query 599 TPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNN 658 G + + + A+L+ ++C++ A+ + ++ W +T + F T +GC++ E N Sbjct 589 --GYHPNFERALLFNGLSCSQRSRAV-TEPVSVLWSASATAQDAFDTPSGCVVNVELRNT 645 Query 659 SY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSI---A 713 + C +PIG +C + + + A S+ ++ Y +NS A + Sbjct 646 TIVNTCAMPIGNSLC--FINGSIATANADSLPRLQLVNYDPLY--DNSTATPMTPVYWVK 701 Query 714 IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVE 773 +PTNFT+S T E + + K ++DC Y+CGDS+ C N+LL YG+FC +N+AL+ ++ Sbjct 702 VPTNFTLSATEEYIQTTAPKITIDCARYLCGDSSRCLNVLLHYGTFCNDINKALSRVSTI 761 Query 774 QDKNTQEVFAQVKQIYKTPPIKDF---GGFNFSQIL----PDPSKPSKRSFIEDLLFNKV 826 D + ++ I + F G +NF+ ++ P+ + RS DLL++KV Sbjct 762 LDSALLSLVKELS-INTRDEVTTFSFDGDYNFTGLMGCLGPNCGATTYRSAFSDLLYDKV 820 Query 827 TLADAGFIKQYGDCLG---DIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTIT 883 + D GF++ Y C+ + RDL+C Q +NG+ VLPP+++ M A YTS L+ + Sbjct 821 RITDPGFMQSYQKCIDSQWGGSIRDLLCTQTYNGIAVLPPIVSPAMQALYTSLLVGAVAS 880 Query 884 SGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTAS 943 SG+TFG +A IPFA Q+ +R NGIGVT VL ENQKLIA+ FN+A+ IQ + T+ Sbjct 881 SGYTFGITSAGVIPFATQLQFRLNGIGVTTQVLVENQKLIASSFNNALVNIQKGFTETSI 940 Query 944 ALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQS 1003 AL K+QDV+NQ+A L+TLV QL ++FGAISS +N+I SRL+ + A ++DRLI GR+ Sbjct 941 ALSKMQDVINQHAAQLHTLVVQLGNSFGAISSSINEIFSRLEGLAANAEVDRLINGRMMV 1000 Query 1004 LQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFL 1063 L TYVTQ LI+A+E +A LAA K+SECV QS R DFCG G H++S PQ AP+GV+F+ Sbjct 1001 LNTYVTQLLIQASEAKAQNALAAQKISECVKAQSLRNDFCGNGTHVLSIPQLAPNGVLFI 1060 Query 1064 HVTYVPAQEKNFTTAPAICHDGKAHFPREGVFV--SNGTHWFVTQRNFYEPQIITTDNTF 1121 H Y P + T+ +CH+G + PR+G+FV +N W T FY P I+ NT Sbjct 1061 HYAYTPTEYAFVQTSAGLCHNGTGYAPRQGMFVLPNNTNMWHFTTMQFYNPVNISASNTQ 1120 Query 1122 VSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQK 1181 V +C V VN TV +P P F++E DK++KN ++ + + + N S V++ Sbjct 1121 VLTSCSVNYTSVNYTVLEPSVPGDYDFQKEFDKFYKNLSTIFNNTFNPNDFNFSTVDVTA 1180 Query 1182 EIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCC 1241 +I L++V LN+S IDL++L YE+ IKWPWY+WL IAG++ +V+ IML CMT+CC Sbjct 1181 QIKSLHDVVNQLNQSFIDLKKLNVYEKTIKWPWYVWLAMIAGIVGLVLAVIMLMCMTNCC 1240 Query 1242 SCLKGCCSCGSCC-KFDE-DDSEPVLK 1266 SC KG C C CC +D DD P ++ Sbjct 1241 SCFKGMCDCRRCCGSYDSYDDVYPAVR 1267 >sp|Q0Q4F2|SPIKE_BC133 Spike glycoprotein OS=Bat coronavirus 133/2005 OX=389230 GN=S PE=3 SV=1 Length=1350 Score = 1140 bits (2949), Expect = 0.0, Method: Composition-based stats. Identities = 408/1286 (32%), Positives = 615/1286 (48%), Gaps = 92/1286 (7%) Query 43 FRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIR 102 + SV H+ + P + ++ + + NG + + + + I + Sbjct 90 YLYSVSHAVGNDGDPTKAYISNYSLLVNDFDNGFVVRIGAAANSTGTIVISPSVNTKIKK 149 Query 103 GW---IFGTTLDSKTQSLLIVNNATNVVI-----KVCEFQFCNDPFLGVYYHKNNKSWME 154 + I G++L + + + N + +I V +C + + Sbjct 150 AYPAFILGSSLTNTSAGKPLYANYSLTIIPDGCGTVLHAFYCILKPRTGNRCPSGSDYNA 209 Query 155 SEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVR 214 + +Y + ++ +++ ++ +F +L F N + + Sbjct 210 --YFIYETIHSDCQSTINRNASLN---SFKSFFDLVNCTFFNS-WDITADETKEWFGITQ 263 Query 215 DLPQGFSALEPLVDLPIGINITRFQTLLA---------LHRSYLTPGDSSSGWTAGAAAY 265 D QG G N+ RF TL + RS+ + + W AA+ Sbjct 264 D-TQGVHLHSSRKGDLYGGNMFRFATLPVYEGIKYYTVIPRSFRSKANKREAW----AAF 318 Query 266 YVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTES 325 YV L T+LL ++ +G I A+DC D LS+ C+ SF V+ G+Y S++ T + Sbjct 319 YVYKLHQLTYLLDFSVDGYIRRAIDCGHDDLSQLHCSYTSFEVDTGVYSVSSYEASATGT 378 Query 326 IVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPT 385 + PN+T C F + VY + R SNC + + L + + F C G+SP Sbjct 379 FIEQPNVTE-CDFSPMLTGVA-PQVYNFKRLVFSNCNYNLTKLLSLFAVDEFSCNGISPD 436 Query 386 KLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGC-VIAWNSNNLDSK 444 + C++ + D F I PG G I YNYK C V+A +N+ Sbjct 437 AIARGCYSTLTVDYFAYPLSMKSYIRPGSAGNIPLYNYKQSFANPTCRVMASVPDNVTIT 496 Query 445 VGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNC--YFPL---------- 492 G Y Y+ + R L +DI T +Y N E C + PL Sbjct 497 KPGAYGYISKCSR---LTGVNQDIETPLY------INPGEYSICRDFAPLGFSEDGQVFK 547 Query 493 ----QSYGFQPTNGVGY------QPYRVVVLSFELLHAPATVCGPKKSTNLVK-----NK 537 Q G GVG V+S + +VC + + K Sbjct 548 RTLTQFEGGGLLIGVGTRVPMTANLEMGFVISVQYGTGTDSVCPMLDLGDSLTITNRLGK 607 Query 538 CVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSV 597 CV+++ G+TG GV + Q+F D D + PC VSV Sbjct 608 CVDYSLYGVTGRGVFQNCTAVGVKQQRFVYDSFDNLVGYYSDDGN-YYCVRPCVSVPVSV 666 Query 598 ITPGTNTSNQVAVLYQDVNCTEVPVAIHA-DQLTPTWRVYSTGSNVFQTRAGCLIGAEHV 656 I ++N A L+ V C V + +LT + + QT GC+IG + Sbjct 667 IYD--KSTNLHATLFGSVACEHVTTMMSQFSRLTQSNLRRRDSNTPLQTAVGCVIGLSNN 724 Query 657 N-NSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIP 715 + +C +P+G +CA A S +++ YT + + S + AIP Sbjct 725 SLVVSDCKLPLGQSLCAVPPVSMFRSYSA-SQFQLAVLNYTSPI-VVTPINSSGFTAAIP 782 Query 716 TNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQD 775 TNF+ S+T E + S+ K +VDC Y+C T C LL++YG FC+++N+AL G + QD Sbjct 783 TNFSFSLTQEYIETSIQKVTVDCKQYVCNGFTRCEKLLVEYGQFCSKINQALHGANLRQD 842 Query 776 KNTQEVFAQVKQI-YKTPPIKDFGGFNFSQI-LPDPSKPSKRSFIEDLLFNKVTLADAGF 833 ++ +++ +K +T G FN + + +P S RS IEDLLF+KVT+AD G+ Sbjct 843 ESVYSLYSNIKTTSTQTLEYGLNGDFNLTLLQVPQIGGSSYRSAIEDLLFDKVTIADPGY 902 Query 834 IKQYGDCL--GDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAG 891 ++ Y DC+ G +ARDLICAQ +G VLPPL M A YTS+LL +GWT G Sbjct 903 MQGYDDCMKQGPQSARDLICAQYVSGYKVLPPLYDPNMEAAYTSSLLGSIAGAGWTAGLS 962 Query 892 AALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDV 951 + IPFA M YR NG+G+TQ VL ENQKLIAN+FN A+G +Q +++ A K+QD Sbjct 963 SFAAIPFAQSMFYRLNGVGITQQVLSENQKLIANKFNQALGAMQTGFTTSNLAFSKVQDA 1022 Query 952 VNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQ 1011 VN NAQAL+ L +LS+ FGAISS ++DIL+RLD VE + QIDRLI GRL SL +V+QQ Sbjct 1023 VNANAQALSKLASELSNTFGAISSSISDILARLDTVEQDAQIDRLINGRLTSLNAFVSQQ 1082 Query 1012 LIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQ 1071 L+R+ SA LA+ K++ECV QSKR FCG G H++SF +AP+G F HV YVP Sbjct 1083 LVRSETAARSAQLASDKVNECVKSQSKRNGFCGSGTHIVSFVVNAPNGFYFFHVGYVPTN 1142 Query 1072 EKNFTTAPAICHDGKA---HFPREGVFVSN-------GTHWFVTQRNFYEPQIITTDNTF 1121 N T A +C+ P +G F++N T W+ T +F++P+ IT N+ Sbjct 1143 YTNVTAAYGLCNHNNPPLCIAPIDGYFITNQTTTYSVDTEWYYTGSSFFKPEPITQANSR 1202 Query 1122 VSGNCDVVIGIVNNTVYDPLQPE--LDSFKEELDKYFKNHTSPDVDLGDISGINASVVNI 1179 + DV + N + PL FK+EL+++FKN TS + +IS IN +++++ Sbjct 1203 YVSS-DVKFEKLENNLPPPLLENSTDVDFKDELEEFFKNVTSHGPNFAEISKINTTLLDL 1261 Query 1180 QKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTS 1239 E+ L EV K LN+S IDL+ELG Y Y KWPWYIWLGFIAGL+A+++ L C T Sbjct 1262 SDEMAILQEVVKQLNDSYIDLKELGNYTYYNKWPWYIWLGFIAGLVALLLCVFFLLCCTG 1321 Query 1240 CCSCLKGCCSCGSCCK-FDEDDSEPV 1264 C + G C +CC ++E D E + Sbjct 1322 CGTSCLGKMKCKNCCDSYEEYDVEKI 1347 >sp|P25191|SPIKE_CVBL9 Spike glycoprotein OS=Bovine coronavirus (strain L9) OX=11130 GN=S PE=1 SV=1 Length=1363 Score = 1138 bits (2944), Expect = 0.0, Method: Composition-based stats. Identities = 383/1409 (27%), Positives = 604/1409 (43%), Gaps = 197/1409 (14%) Query 2 FVFLVLLPLVSSQCVNLTTRTQL-------PPAYTN-----SFTRGVYYP-DKVFRSSVL 48 + L+ LP+ + +L T P+ + + G YY D+V+ ++ L Sbjct 3 LILLISLPMAFAVIGDLKCTTVSINDVDTGAPSISTDIVDVTNGLGTYYVLDRVYLNTTL 62 Query 49 HSTQDLFLPFFSNVTWFHAIHVSGTN--GTKRFDNPVL-PFNDGVYFASTEKSNIIRGWI 105 + P ++ + + + + GT F P L F +G+ FA + + +I+ + Sbjct 63 LLNG--YYP--TSGSTYRNMALKGTLLLSRLWFKPPFLSDFINGI-FAKVKNTKVIKKGV 117 Query 106 FGTTLDSKTQSLLIVNNATNVV-----------------IKVCEFQFCNDPFLGVYYHKN 148 + + T VN + +VV I VC++ C P H N Sbjct 118 MYSEFPAITIGSTFVNTSYSVVVQPHTTNLDNKLQGLLEISVCQYTMCEYPHT--ICHPN 175 Query 149 NKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHT 208 + + + +C ++ + F D+ F F G F Y T Sbjct 176 LGNKRVELWHWDTGVVSCLYK---RNFTYDVNADYLY------FHFYQEGGTFYAYFTDT 226 Query 209 PINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVG 268 + + L ++ +G ++ + Y+ P +S T Y+V Sbjct 227 GV-----------VTKFLFNVYLGTVLSHY---------YVLPLTCNSAMT---LEYWVT 263 Query 269 YLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVR 328 L + +LL +N++G I +AVDC D +SE KC S G+Y+ + + VQP + R Sbjct 264 PLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELNGYTVQPIADVYR 323 Query 329 -FPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKL 387 PN+ + C N S W RK SNC + S L + +F C + K+ Sbjct 324 RIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCNFNMSCLMSFIQADSFTCNNIDAAKI 382 Query 388 NDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSN----NLDS 443 +CF+++ D F I + G G + +NY++ T C + +N ++ Sbjct 383 YGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTTATSCQLYYNLPAANVSVSR 442 Query 444 KVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQS--------- 494 +N + +S KP + T + C C L Sbjct 443 FNPSTWNRRFGFTEQSVFKPQPVGVFTHHDVVYAQHCFKAPTNFCPCKLDGSLCVGNGPG 502 Query 495 -YGFQPTNGVGYQPYRV------------------------------------------- 510 +G+G P Sbjct 503 IDAGYKNSGIGTCPAGTNYLTCHNAAQCDCLCTPDPITSKSTGPYKCPQTKYLVGIGEHC 562 Query 511 --VVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRD 568 + + + C P+ + C+ + + +L + N + Sbjct 563 SGLAIKSDYCGGNPCTCQPQAFLGWSVDSCLQGDRCNIFANFILHDVNSGTTCSTDLQKS 622 Query 569 IADTTDAVRDPQTLEILDIT----------PCSFGGVSVITPGTNT-------SNQVAVL 611 D V ++ IT P +++ + Sbjct 623 NTDIILGV--CVNYDLYGITGQGIFVEVNAPYYNSWQNLLYDSNGNLYGFRDYLTNRTFM 680 Query 612 YQDVNCTEVPVAIHADQLTPTWRVYSTGSNV---------------FQTRAGCLIGAEHV 656 + V A HA+ P + N F + GC++ A++ Sbjct 681 IRSCYSGRVSAAFHANSSEPALLFRNIKCNYVFNNTLSRQLQPINYFDSYLGCVVNADNS 740 Query 657 NNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNN---- 710 +S CD+ +G+G C Y T RR+R + NSV S Sbjct 741 TSSVVQTCDLTVGSGYCVDYST----KRRSRRAITTGYRFTNFEPFTVNSVNDSLEPVGG 796 Query 711 --SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALT 768 I IP+ FTI E + S K ++DC+ ++CGD C + L++YGSFC +N LT Sbjct 797 LYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGSFCDNINAILT 856 Query 769 GIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGF-----NFSQILP----DPSKPSKRSFI 818 + D +V + + + + +KD F NFS +L D +K S RS I Sbjct 857 EVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSDCNKVSSRSAI 916 Query 819 EDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALL 878 EDLLF+KV L+D GF++ Y +C G RDLIC Q +NG+ VLPPLL+ I+ YT A Sbjct 917 EDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSVNQISGYTLAAT 976 Query 879 AGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSL 938 + ++ W+ AG +PF + + YR NGIGVT +VL +NQKLIAN FN+A+ IQ+ Sbjct 977 SASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFNNALDAIQEGF 1032 Query 939 SSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLIT 998 +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +EA+ QIDRLI Sbjct 1033 DATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALEAQAQIDRLIN 1092 Query 999 GRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPH 1058 GRL +L YV+QQL + ++ SA A K++ECV QS R++FCG G H++S Q+AP+ Sbjct 1093 GRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNHIISLVQNAPY 1152 Query 1059 GVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQRNFYEPQIITT 1117 G+ F+H +YVP + +P +C G + P+ G FV+ W T +Y P+ IT Sbjct 1153 GLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGSGYYYPEPITG 1212 Query 1118 DNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVV 1177 +N V C + + + P L FKEELD++FKN TS DL + IN + + Sbjct 1213 NNVVVMSTCAANYTKAPDVMLNISTPNLHDFKEELDQWFKNQTSVAPDL-SLDYINVTFL 1271 Query 1178 NIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCM 1237 ++Q E++RL E K LN+S I+L+++G YE Y+KWPWY+WL + G + M+ ++ Sbjct 1272 DLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGVAMLVLLFFIC 1329 Query 1238 TSCCSCLKGCCSCGSCCKFDEDDSEPVLK 1266 CG CC E V+K Sbjct 1330 CCTGCGTSCFKICGGCCDDYTGHQELVIK 1358 >sp|A3EXD0|SPIKE_BCHK5 Spike glycoprotein OS=Bat coronavirus HKU5 OX=694008 GN=S PE=1 SV=1 Length=1352 Score = 1129 bits (2921), Expect = 0.0, Method: Composition-based stats. Identities = 402/1174 (34%), Positives = 576/1174 (49%), Gaps = 76/1174 (6%) Query 132 EFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLRE 191 + P N+ F+VY NCTF Y + +N Sbjct 211 SLSLWDTPASDCVSGSYNQEATLGAFKVYFDLINCTFRY-----NYTITED----ENAEW 261 Query 192 FVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTP 251 F +YS + + LP+ I + + RS +P Sbjct 262 FGITQDTQGVHLYSSRKENVFRNN-------MFHFATLPVYQKILYY---TVIPRSIRSP 311 Query 252 GDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKG 311 + W AA+Y+ L P T+LL ++ G IT AVDC D L++ +C+ +SF VE G Sbjct 312 FNDRKAW----AAFYIYKLHPLTYLLNFDVEGYITKAVDCGYDDLAQLQCSYESFEVETG 367 Query 312 IYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNS 371 +Y S+F P + T C F + T +Y + R +NC + + L + Sbjct 368 VYSVSSFEASPRGEFIEQA-TTQECDFTPMLTGTP-PPIYNFKRLVFTNCNYNLTKLLSL 425 Query 372 ASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTG 431 S F C+ VSP+ L C++++ D F D + PG G I +NYK Sbjct 426 FQVSEFSCHQVSPSSLATGCYSSLTVDYFAYSTDMSSYLQPGSAGAIVQFNYKQDFSNPT 485 Query 432 C-VIAWNSNNLDSKVGG-NYNYLYRLFRKSNLKPFERDISTEIYQA--GSTPCNGV--EG 485 C V+A NL + NY YL ++ S +Y A TPC + G Sbjct 486 CRVLATVPQNLTTITKPSNYAYLTECYKTSAYG------KNYLYNAPGAYTPCLSLASRG 539 Query 486 FNCYFPLQSYGFQPTNGVGY----QPYRVVVLSFELLHAPATVCGPKKSTNLV-----KN 536 F+ + S G T G Y ++S + +VC + N + Sbjct 540 FSTKYQSHSDGELTTTGYIYPVTGNLQMAFIISVQYGTDTNSVCPMQALRNDTSIEDKLD 599 Query 537 KCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVS 596 CV ++ +G+TG GV L Q+F D D + PC VS Sbjct 600 VCVEYSLHGITGRGVFHNCTSVGLRNQRFVYDTFDNLVGYHSDNGN-YYCVRPCVSVPVS 658 Query 597 VITPGTNTSNQVAVLYQDVNCTEVPVAIHA-DQLTPTWRVYSTGSNVFQTRAGCLIGAEH 655 VI SN A L+ V C+ V + ++T T + T QT GC +G + Sbjct 659 VIYD--KASNSHATLFGSVACSHVTTMMSQFSRMTKTNLLARTTPGPLQTTVGCAMGFIN 716 Query 656 VNNSYE-CDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNS--- 711 + + C +P+G +CA T ++ RRA S AS T++ + ++A N++ Sbjct 717 SSMVVDECQLPLGQSLCAIPPTTSSRVRRATSGASDVFQIATLNFTSPLTLAPINSTGFV 776 Query 712 IAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIA 771 +A+PTNFT VT E + ++ K +VDC Y+C +C +LL +YG FC+++N+AL G Sbjct 777 VAVPTNFTFGVTQEFIETTIQKITVDCKQYVCNGFKKCEDLLKEYGQFCSKINQALHGAN 836 Query 772 VEQDKNTQEVFAQVKQIYKTPPIKDF-GGFNFSQI-LPD--PSKPSKRSFIEDLLFNKVT 827 + QD++ +F+ +K P G FN + + +P + RS IEDLLFNKVT Sbjct 837 LRQDESIANLFSSIKTQNTQPLQAGLNGDFNLTMLQIPQVTTGERKYRSTIEDLLFNKVT 896 Query 828 LADAGFIKQYGDCL--GDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSG 885 +AD G+++ Y +C+ G +ARDLICAQ G VLPPL M A YTS+LL + Sbjct 897 IADPGYMQGYDECMQQGPQSARDLICAQYVAGYKVLPPLYDPYMEAAYTSSLLGSIAGAS 956 Query 886 WTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASAL 945 WT G + IPFA + YR NG+G+TQ VL ENQK+IAN+FN A+G +Q ++T A Sbjct 957 WTAGLSSFAAIPFAQSIFYRLNGVGITQQVLSENQKIIANKFNQALGAMQTGFTTTNLAF 1016 Query 946 GKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQ 1005 K+QD VN NA AL+ L +LS+ FGAISS ++DIL+RLD VE E QIDRLI GRL SL Sbjct 1017 NKVQDAVNANAMALSKLAAELSNTFGAISSSISDILARLDTVEQEAQIDRLINGRLTSLN 1076 Query 1006 TYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHV 1065 +V QQL+R SA LA K++ECV QSKR FCG G H++SF +AP+G+ F HV Sbjct 1077 AFVAQQLVRTEAAARSAQLAQDKVNECVKSQSKRNGFCGTGTHIVSFAINAPNGLYFFHV 1136 Query 1066 TYVPAQEKNFTTAPAICHD---GKAHFPREGVFVSNGT---------HWFVTQRNFYEPQ 1113 Y P N T A +C+ K P +G FV N T W+ T +F+ P+ Sbjct 1137 GYQPTSHVNATAAYGLCNTENPQKCIAPIDGYFVLNQTTSTVADSDQQWYYTGSSFFHPE 1196 Query 1114 IITTDNTFVSGNCDVVIGIVNNTVYDPLQPE--LDSFKEELDKYFKNHTSPDVDLGDISG 1171 IT N+ + DV + N + PL FKEEL+++FKN +S + +IS Sbjct 1197 PITEANSKYV-SMDVKFENLTNRLPPPLLSNSTDLDFKEELEEFFKNVSSQGPNFQEISK 1255 Query 1172 INASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVT 1231 IN +++N+ E+ L+EV K LNES IDL+ELG Y Y KWPWYIWLGFIAGL+A+ + Sbjct 1256 INTTLLNLNTELMVLSEVVKQLNESYIDLKELGNYTFYQKWPWYIWLGFIAGLVALALCV 1315 Query 1232 IMLCCMTSCCSCLKGCCSCGSCCK-FDEDDSEPV 1264 + C T C + G C CC +DE + E + Sbjct 1316 FFILCCTGCGTSCLGKLKCNRCCDSYDEYEVEKI 1349 >sp|A3EX94|SPIKE_BCHK4 Spike glycoprotein OS=Bat coronavirus HKU4 OX=694007 GN=S PE=1 SV=1 Length=1352 Score = 1129 bits (2921), Expect = 0.0, Method: Composition-based stats. Identities = 407/1288 (32%), Positives = 611/1288 (47%), Gaps = 94/1288 (7%) Query 43 FRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIR 102 + SV H+ P + ++ + + NG + + + + I + Sbjct 90 YLYSVSHAVGHDGDPTKAYISNYSLLVNDFDNGFVVRIGAAANSTGTIVISPSVNTKIKK 149 Query 103 GW---IFGTTLDSKTQSLLIVNNATNVVI-----KVCEFQFCNDPFLGVYYHKNNKSWME 154 + I G++L + + + N + +I V +C V + ++ Sbjct 150 AYPAFILGSSLTNTSAGQPLYANYSLTIIPDGCGTVLHAFYCILKPRTVNRCPSGTGYVS 209 Query 155 SEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVR 214 + +Y + +N +++ ++ +F +L F N + + Sbjct 210 --YFIYETVHNDCQSTINRNASLN---SFKSFFDLVNCTFFNS-WDITADETKEWFGITQ 263 Query 215 DLPQGFSALEPLVDLPIGINITRFQTLLA---------LHRSYLTPGDSSSGWTAGAAAY 265 D QG G N+ RF TL + RS+ + + W AA+ Sbjct 264 D-TQGVHLYSSRKGDLYGGNMFRFATLPVYEGIKYYTVIPRSFRSKANKREAW----AAF 318 Query 266 YVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTES 325 YV L T+LL ++ +G I A+DC D LS+ C+ SF V+ G+Y S++ T + Sbjct 319 YVYKLHQLTYLLDFSVDGYIRRAIDCGHDDLSQLHCSYTSFEVDTGVYSVSSYEASATGT 378 Query 326 IVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPT 385 + PN T C F + VY + R SNC + + L + + F C G+SP Sbjct 379 FIEQPNATE-CDFSPMLTGVA-PQVYNFKRLVFSNCNYNLTKLLSLFAVDEFSCNGISPD 436 Query 386 KLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGC-VIAWNSNNLDSK 444 + C++ + D F I PG G I YNYK C V+A N+ Sbjct 437 SIARGCYSTLTVDYFAYPLSMKSYIRPGSAGNIPLYNYKQSFANPTCRVMASVLANVTIT 496 Query 445 VGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCY--------------- 489 Y Y+ + R L +D+ T +Y N E C Sbjct 497 KPHAYGYISKCSR---LTGANQDVETPLY------INPGEYSICRDFSPGGFSEDGQVFK 547 Query 490 -FPLQSYGFQPTNGVGY------QPYRVVVLSFELLHAPATVCGPKKSTNLVK-----NK 537 Q G GVG ++S + +VC + + K Sbjct 548 RTLTQFEGGGLLIGVGTRVPMTDNLQMSFIISVQYGTGTDSVCPMLDLGDSLTITNRLGK 607 Query 538 CVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSV 597 CV+++ G+TG GV + Q+F D D + PC VSV Sbjct 608 CVDYSLYGVTGRGVFQNCTAVGVKQQRFVYDSFDNLVGYYSDDGN-YYCVRPCVSVPVSV 666 Query 598 ITPGTNTSNQVAVLYQDVNCTEVPVAIHA-DQLTPTWRVYSTGSNVFQTRAGCLIGAEHV 656 I ++N A L+ V C V + +LT + + QT GC+IG + Sbjct 667 IYD--KSTNLHATLFGSVACEHVTTMMSQFSRLTQSNLRRRDSNIPLQTAVGCVIGLSNN 724 Query 657 N-NSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIP 715 + +C +P+G +CA T A S +++ YT + + S + AIP Sbjct 725 SLVVSDCKLPLGQSLCAVPPVSTFRSYSA-SQFQLAVLNYTSPI-VVTPINSSGFTAAIP 782 Query 716 TNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQD 775 TNF+ SVT E + S+ K +VDC Y+C T C LL++YG FC+++N+AL G + QD Sbjct 783 TNFSFSVTQEYIETSIQKVTVDCKQYVCNGFTRCEKLLVEYGQFCSKINQALHGANLRQD 842 Query 776 KNTQEVFAQVKQI-YKTPPIKDFGGFNFSQILPDP---SKPSKRSFIEDLLFNKVTLADA 831 ++ +++ +K +T G FN + + S S RS IEDLLF+KVT+AD Sbjct 843 ESVYSLYSNIKTTSTQTLEYGLNGDFNLTLLQVPQIGGSSSSYRSAIEDLLFDKVTIADP 902 Query 832 GFIKQYGDCL--GDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFG 889 G+++ Y DC+ G +ARDLICAQ +G VLPPL M A YTS+LL +GWT G Sbjct 903 GYMQGYDDCMKQGPQSARDLICAQYVSGYKVLPPLYDPNMEAAYTSSLLGSIAGAGWTAG 962 Query 890 AGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQ 949 + IPFA M YR NG+G+TQ VL ENQKLIAN+FN A+G +Q +++ A K+Q Sbjct 963 LSSFAAIPFAQSMFYRLNGVGITQQVLSENQKLIANKFNQALGAMQTGFTTSNLAFSKVQ 1022 Query 950 DVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVT 1009 D VN NAQAL+ L +LS+ FGAISS ++DIL+RLD VE + QIDRLI GRL SL +V+ Sbjct 1023 DAVNANAQALSKLASELSNTFGAISSSISDILARLDTVEQDAQIDRLINGRLISLNAFVS 1082 Query 1010 QQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVP 1069 QQL+R+ SA LA+ K++ECV QSKR FCG G H++SF +AP+G F HV YVP Sbjct 1083 QQLVRSETAARSAQLASDKVNECVKSQSKRNGFCGSGTHIVSFVVNAPNGFYFFHVGYVP 1142 Query 1070 AQEKNFTTAPAICHDGKA---HFPREGVFVSN-------GTHWFVTQRNFYEPQIITTDN 1119 N T A +C++ P +G F++N T W+ T +FY+P+ IT N Sbjct 1143 TNYTNVTAAYGLCNNNNPPLCIAPIDGYFITNQTTTYSVDTEWYYTGSSFYKPEPITQAN 1202 Query 1120 TFVSGNCDVVIGIVNNTVYDPLQPE--LDSFKEELDKYFKNHTSPDVDLGDISGINASVV 1177 + + DV + N + PL FK+EL+++FKN TS + +IS IN +++ Sbjct 1203 SRYVSS-DVKFDKLENNLPPPLLENSTDVDFKDELEEFFKNVTSHGPNFAEISKINTTLL 1261 Query 1178 NIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCM 1237 ++ E+ L EV K LN+S IDL+ELG Y Y KWPWY+WLGFIAGL+A+++ L C Sbjct 1262 DLSDEMAMLQEVVKQLNDSYIDLKELGNYTYYNKWPWYVWLGFIAGLVALLLCVFFLLCC 1321 Query 1238 TSCCSCLKGCCSCGSCCK-FDEDDSEPV 1264 T C + G C +CC ++E D E + Sbjct 1322 TGCGTSCLGKMKCKNCCDSYEEYDVEKI 1349 >sp|K9N5Q8|SPIKE_MERS1 Spike glycoprotein OS=Middle East respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012) OX=1263720 GN=S PE=1 SV=1 Length=1353 Score = 1110 bits (2871), Expect = 0.0, Method: Composition-based stats. Identities = 398/1345 (30%), Positives = 610/1345 (45%), Gaps = 112/1345 (8%) Query 8 LPLVSSQCVNLTTRTQL--PPAYTNSFTRGVYYP-DKVFRSSVLHSTQDL-FLPFFSNVT 63 + + T P S G+ YP + + + + + ++ Sbjct 26 VKSACIEVDIQQTFFDKTWPRPIDVSKADGIIYPQGRTYSNITITYQGLFPYQGDHGDMY 85 Query 64 WFHAIHVSGTNGTKRF----DNPVLPFNDG----VYFASTEKSNIIRGWIFGTT----LD 111 + A H +GT K F V F +G + A+ +I T Sbjct 86 VYSAGHATGTTPQKLFVANYSQDVKQFANGFVVRIGAAANSTGTVIISPSTSATIRKIYP 145 Query 112 SKTQSLLIVNNATNVVIKVCEFQFCNDP------FLGVYY--------HKNNKSWMESEF 157 + + N + + + P Y H + S Sbjct 146 AFMLGSSVGNFSDGKMGRFFNHTLVLLPDGCGTLLRAFYCILEPRSGNHCPAGNSYTSFA 205 Query 158 RVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGY-FKIYSKHTPINLVRDL 216 ++ A +C+ ++ ++ + N +N NI + T Sbjct 206 TYHTPATDCSDGNYNRNASLNSFKEYFNLRNCTFMYTYNITEDEILEWFGITQT------ 259 Query 217 PQGFSALEPLVDLPIGINITRFQTLLA---------LHRSYLTPGDSSSGWTAGAAAYYV 267 QG G N+ +F TL + S + W AA+YV Sbjct 260 AQGVHLFSSRYVDLYGGNMFQFATLPVYDTIKYYSIIPHSIRSIQSDRKAW----AAFYV 315 Query 268 GYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIV 327 LQP TFLL ++ +G I A+DC + LS+ C+ +SF VE G+Y S+F +P+ S+V Sbjct 316 YKLQPLTFLLDFSVDGYIRRAIDCGFNDLSQLHCSYESFDVESGVYSVSSFEAKPSGSVV 375 Query 328 RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKL 387 C F + + T VY + R +NC + + L + S + F C +SP + Sbjct 376 EQAEGVE-CDFSPLLSGTP-PQVYNFKRLVFTNCNYNLTKLLSLFSVNDFTCSQISPAAI 433 Query 388 NDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCV-IAWNSNNLDSKVG 446 C++++ D F ++ G I+ +NYK C+ +A +NL + Sbjct 434 ASNCYSSLILDYFSYPLSMKSDLSVSSAGPISQFNYKQSFSNPTCLILATVPHNLTTITK 493 Query 447 G-NYNYLYRLFRKSNLKPFERDISTEIYQAG----STPCNGV------EGFNCYF----P 491 Y+Y+ + R F D TE+ Q +PC + E + Y P Sbjct 494 PLKYSYINKCSR------FLSDDRTEVPQLVNANQYSPCVSIVPSTVWEDGDYYRKQLSP 547 Query 492 LQSYGFQPTNGVGYQPYRVVVLSF----ELLHAPATVCGPKKSTNLV-----KNKCVNFN 542 L+ G+ +G + + F + +VC + N CV ++ Sbjct 548 LEGGGWLVASGSTVAMTEQLQMGFGITVQYGTDTNSVCPKLEFANDTKIASQLGNCVEYS 607 Query 543 FNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGT 602 G++G GV + Q+F D + C VSVI Sbjct 608 LYGVSGRGVFQNCTAVGVRQQRFVYDAYQNLVGYYSDDGN-YYCLRACVSVPVSVIYDKE 666 Query 603 NTSNQVAVLYQDVNCTEVPVAIHA--DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY 660 + A L+ V C + + + + QT GC++G + + Sbjct 667 TKT--HATLFGSVACEHISSTMSQYSRSTRSMLKRRDSTYGPLQTPVGCVLGLVNSSLFV 724 Query 661 -ECDIPIGAGICASYQTQT-NSPRRARSVASQSIIAYTMSLGAENSVAYSNNS---IAIP 715 +C +P+G +CA T + +PR RSV + +A +++ V N+S ++IP Sbjct 725 EDCKLPLGQSLCALPDTPSTLTPRSVRSVPGEMRLA-SIAFNHPIQVDQLNSSYFKLSIP 783 Query 716 TNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQD 775 TNF+ VT E + ++ K +VDC Y+C +C LL +YG FC+++N+AL G + QD Sbjct 784 TNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQLLREYGQFCSKINQALHGANLRQD 843 Query 776 KNTQEVFAQVKQIYKTPPIKDFG-GFNFSQILP---DPSKPSKRSFIEDLLFNKVTLADA 831 + + +FA VK +P I FG FN + + P S RS IEDLLF+KVT+AD Sbjct 844 DSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPVSISTGSRSARSAIEDLLFDKVTIADP 903 Query 832 GFIKQYGDCL--GDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFG 889 G+++ Y DC+ G +ARDLICAQ G VLPPL+ M A YTS+LL GWT G Sbjct 904 GYMQGYDDCMQQGPASARDLICAQYVAGYKVLPPLMDVNMEAAYTSSLLGSIAGVGWTAG 963 Query 890 AGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQ 949 + IPFA + YR NG+G+TQ VL ENQKLIAN+FN A+G +Q ++T A K+Q Sbjct 964 LSSFAAIPFAQSIFYRLNGVGITQQVLSENQKLIANKFNQALGAMQTGFTTTNEAFHKVQ 1023 Query 950 DVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVT 1009 D VN NAQAL+ L +LS+ FGAIS+ + DI+ RLD +E + QIDRLI GRL +L +V Sbjct 1024 DAVNNNAQALSKLASELSNTFGAISASIGDIIQRLDVLEQDAQIDRLINGRLTTLNAFVA 1083 Query 1010 QQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVP 1069 QQL+R+ SA LA K++ECV QSKR FCG+G H++SF +AP+G+ F+HV Y P Sbjct 1084 QQLVRSESAALSAQLAKDKVNECVKAQSKRSGFCGQGTHIVSFVVNAPNGLYFMHVGYYP 1143 Query 1070 AQEKNFTTAPAICHDGKA---HFPREGVFVSNGT-----HWFVTQRNFYEPQIITTDNTF 1121 + +A +C P G F+ W T +FY P+ IT+ NT Sbjct 1144 SNHIEVVSAYGLCDAANPTNCIAPVNGYFIKTNNTRIVDEWSYTGSSFYAPEPITSLNTK 1203 Query 1122 VSGNCDVVIGIVNNTVYDPLQPELD--SFKEELDKYFKNHTSPDVDLGDISGINASVVNI 1179 V ++ + PL F++ELD++FKN ++ + G ++ IN +++++ Sbjct 1204 YVAP-QVTYQNISTNLPPPLLGNSTGIDFQDELDEFFKNVSTSIPNFGSLTQINTTLLDL 1262 Query 1180 QKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTS 1239 E+ L +V K LNES IDL+ELG Y Y KWPWYIWLGFIAGL+A+ + + C T Sbjct 1263 TYEMLSLQQVVKALNESYIDLKELGNYTYYNKWPWYIWLGFIAGLVALALCVFFILCCTG 1322 Query 1240 CCSCLKGCCSCGSCCK-FDEDDSEP 1263 C + G C CC ++E D EP Sbjct 1323 CGTNCMGKLKCNRCCDRYEEYDLEP 1347 >sp|Q9IKD1|SPIKE_CVRSD Spike glycoprotein OS=Rat coronavirus (strain 681) OX=33740 GN=S PE=3 SV=1 Length=1360 Score = 1097 bits (2837), Expect = 0.0, Method: Composition-based stats. Identities = 388/1407 (28%), Positives = 589/1407 (42%), Gaps = 186/1407 (13%) Query 1 MFVFLVLLP--------LVSSQCVNLTTRTQLPPAYTN-----SFTRGVYYP-DKVFRSS 46 +FVFL LLP VN P+ + S G YY D+V+ ++ Sbjct 2 LFVFLTLLPSCLGYIGDFRCINLVNTRISNARAPSVSTEVVDVSKGLGTYYVLDRVYLNA 61 Query 47 VLHSTQDLFLPFFSNVTWFHAIHVSGTN--GTKRFDNPVL-PFNDGVYF----------- 92 L T + P + + + + + GTN F+ P L FNDG+Y Sbjct 62 TLLLTG--YYPV--DGSMYRNMALMGTNTLSLNWFEPPFLSEFNDGIYAKVKNLKASLPI 117 Query 93 -ASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKS 151 +++ II G F T S T L N ++ +C++ C P + + Sbjct 118 GSASYFPTIIIGSNFVNT--SYTVVLEPYNGI--IMASICQYTICQLPHTDCKPNTGGNT 173 Query 152 W-----MESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSK 206 + V N TF V+ +L F F G F Y Sbjct 174 LIGFWHTDLRPPVCILKRNFTFN-VNAEWLY--------------FHFYQQGGTFYAYYA 218 Query 207 HTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYY 266 SA L IG +T++ L + +P S + Y+ Sbjct 219 DV-----------SSATTFLFSSYIGAVLTQYFVLPYM----CSPTTS----GVSSPQYW 259 Query 267 VGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI 326 V L R +L +N+ G IT AVDCA SE KC +S G+Y S + VQP + Sbjct 260 VTPLVKRQYLFNFNQKGIITSAVDCASSYTSEIKCKTQSMNPNTGVYDLSGYTVQPVGLV 319 Query 327 VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTK 386 R C E A S W RK NC + S L + C + +K Sbjct 320 YRRVRNLPDCKIEEWLAANTVPSPLNWERKTFQNCNFNLSSLLRFVQAESLSCSNIDASK 379 Query 387 LNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKV- 445 + +CF ++ D F I + G++G + +NYK+ T C + ++ + V Sbjct 380 VYGMCFGSISIDKFAIPNSRRVDLQLGKSGLLQSFNYKIDTRATSCQLYYSLAQDNVTVI 439 Query 446 ---GGNYNYLYRLFRKSNLKPFERDISTEI--YQAGSTPCNGVEGFNCYFPLQSYGFQPT 500 ++N Y + E D++ + G++ C + Y + Sbjct 440 NHNPSSWNRRYGFNDVATFHSGEHDVAYAEACFTVGASYCPCAKPSTVYSCVTGKPKSAN 499 Query 501 NGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGL----TGTGVLTE-- 554 G V + C P T + G+ G G+L + Sbjct 500 CPTGTSNRECNVQASGFKSKCDCTCNPSPLTTYDPRCLQARSMLGVGDHCEGLGILEDKC 559 Query 555 --------SNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSF----------GGVS 596 S F+ + + I T CS GV Sbjct 560 GGSNICNCSADAFVGWAMDSCLSNARCHIFSNLMLNGINSGTTCSTDFQLPNTEVVTGVC 619 Query 597 VITPGTNTSNQVAVLYQDVNCTE---VPVAIHADQLTPTWRVYSTGSNVF---QTRAGCL 650 V ++ Q ++++V ++ + + +G + Sbjct 620 VKYDLYGSTGQG--VFKEVKADYYNSWQNLLYDVNGNLNGFRDIVTNKTYLLRSCYSGRV 677 Query 651 IGAEHVNN--------SYECDIPIGAGI---------------C---ASYQTQTNSPRRA 684 A H + + +CD I C A T+ + Sbjct 678 SAAYHQDAPEPALLYRNLKCDYVFNNNISREETPLNYFDSYLGCVINADNSTEQSVDACD 737 Query 685 RSVASQSIIAYT--------------MSLGAENSVAYSNNSI---------AIPTNFTIS 721 + S + Y+ ++ +V+ N+S+ IPTNFTI+ Sbjct 738 LRMGSGLCVNYSIAHRARRSVSTGYKLTTFEPFTVSIVNDSVESVGGLYEMQIPTNFTIA 797 Query 722 VTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEV 781 E + K ++DC ++CGD T C L+ YGSFC +N L + D +V Sbjct 798 SHQEFIQTRSPKVTIDCAAFVCGDYTACRQQLVDYGSFCDNINAILGEVNNLIDTMQLQV 857 Query 782 FAQVKQIYKTP------PIKDFGGFNFSQILP----DPSKPS----KRSFIEDLLFNKVT 827 + + Q NFS +L D S+ + RS IED+LF+KV Sbjct 858 ASALIQGVTLSSRLADGISGQIDDINFSPLLGCLGSDCSEGTKAAQGRSAIEDVLFDKVK 917 Query 828 LADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWT 887 L+D GF++ Y +C G RDL+C Q FNG+ VLPP+L++ I+ YT+ A + W+ Sbjct 918 LSDVGFVESYNNCTGGQEVRDLLCVQSFNGIKVLPPVLSESQISGYTAGATASAMFPPWS 977 Query 888 FGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGK 947 AG +PFA+ + YR NG+GVT NVL ENQK+IA+ FN+AIG IQ+ +T SAL K Sbjct 978 AAAG----VPFALSVQYRINGLGVTMNVLSENQKMIASSFNNAIGAIQEGFDATNSALAK 1033 Query 948 LQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTY 1007 +Q VVN NA+ALN L+ QLS+ FGAIS+ L +ILSRLD +EA+ QIDRLI GRL +L Y Sbjct 1034 IQSVVNANAEALNNLLNQLSNRFGAISASLQEILSRLDALEAQAQIDRLINGRLTALNAY 1093 Query 1008 VTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTY 1067 V++QL I+ SA A K++ECV QS R++FCG G H++S Q+AP+G+ F+H +Y Sbjct 1094 VSKQLSDMTLIKVSAAQAIEKVNECVKSQSPRINFCGNGNHILSLVQNAPYGLYFIHFSY 1153 Query 1068 VPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC 1126 VP +P +C G + P+ G FV + W T N+Y P+ IT N+ V +C Sbjct 1154 VPTSFTTVNVSPGLCISGDRGLAPKAGYFVQDHGEWKFTGSNYYYPESITDKNSVVMSSC 1213 Query 1127 DVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL-GDISGINASVVNIQKEIDR 1185 V + L FKEELDK+FKN TS DL DI +N + +++ E++R Sbjct 1214 AVNYTKAPEVFLNTSITNLPDFKEELDKWFKNQTSIVPDLSFDIGKLNVTFLDLSYEMNR 1273 Query 1186 LNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLK 1245 + + KNLNES I+L+E+G YE Y+KWPWY+WL + GL + + ++ Sbjct 1274 IQDAIKNLNESYINLKEIGTYEMYVKWPWYVWL--LIGLAGVAVCVLLFFICCCTGCGSC 1331 Query 1246 GCCSCGSCCK-FDEDDSEPVLKGVKLH 1271 CG+CC + + V+ + H Sbjct 1332 CFKKCGNCCDEYGGRQAGIVIHNISSH 1358 >sp|Q0ZME7|SPIKE_CVHN5 Spike glycoprotein OS=Human coronavirus HKU1 (isolate N5) OX=443241 GN=S PE=1 SV=1 Length=1351 Score = 1094 bits (2829), Expect = 0.0, Method: Composition-based stats. Identities = 370/1397 (26%), Positives = 590/1397 (42%), Gaps = 182/1397 (13%) Query 1 MFVFLVLLPLVSSQCVNLTTRTQLPPAYTN------------SFTRGVYYP-DKVFRSSV 47 MF+ + +LP + + Y S G YY ++V+ ++ Sbjct 1 MFLIIFILPTTLAVIGDFNCTNSFINDYNKTIPRISEDVVDVSLGLGTYYVLNRVYLNTT 60 Query 48 LHSTQDLFLPFFSNVTWFHAIHVSGTNGTK--RFDNPVL-PFNDGVYFASTEKSNIIRGW 104 L T F + F + + G+ + P L FN+G+ F+ + + + Sbjct 61 LLFTGY----FPKSGANFRDLALKGSIYLSTLWYKPPFLSDFNNGI-FSKVKNTKLYVNN 115 Query 105 IFGTTLDSKTQSLLIVNNATNVV---------IKVCEFQFCNDPFLGVYYHKNNKSWMES 155 + + + VN + +V I C++ C P + S Sbjct 116 TLYSEFSTIVIGSVFVNTSYTIVVQPHNGILEITACQYTMCEYPHTVCK---SKGSIRNE 172 Query 156 EFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRD 215 + + SS C F+ + F ++ F F G F Y + Sbjct 173 SWHIDSSEPLCLFK---KNFTYNVSADWLY------FHFYQERGVFYAYYADVGM----- 218 Query 216 LPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSS---SGWTAGAAAYYVGYLQP 272 L L +G ++ + Y+ P + S Y+V L Sbjct 219 ------PTTFLFSLYLGTILSHY---------YVMPLTCNAISSNTDNETLEYWVTPLSR 263 Query 273 RTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVR-FPN 331 R +LL ++E+G IT+AVDC+ LSE +C +SF G+Y S F V+P ++ R PN Sbjct 264 RQYLLNFDEHGVITNAVDCSSSFLSEIQCKTQSFAPNTGVYDLSGFTVKPVATVYRRIPN 323 Query 332 ITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLC 391 + + C N S W R+ SNC + S L +F C + +K+ C Sbjct 324 LPD-CDIDNWLNNVSVPSPLNWERRIFSNCNFNLSTLLRLVHVDSFSCNNLDKSKIFGSC 382 Query 392 FTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAW--------------- 436 F ++ D F I + G +G + NYK+ + C + + Sbjct 383 FNSITVDKFAIPNRRRDDLQLGSSGFLQSSNYKIDISSSSCQLYYSLPLVNVTINNFNPS 442 Query 437 ---------------------------NSNNLDSKVGGNYNYLYRLFRKSNLKPFER--- 466 NS+ N + S + P Sbjct 443 SWNRRYGFGSFNLSSYDVVYSDHCFSVNSDFCPCADPSVVNSCAKSKPPSAICPAGTKYR 502 Query 467 --DISTEIYQAGSTPCNGVEG-FNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL---LHA 520 D+ T +Y C+ + + Y P + G+G + + + L+ Sbjct 503 HCDLDTTLYVKNWCRCSCLPDPISTYSPNTCPQKKVVVGIGEHCPGLGINEEKCGTQLNH 562 Query 521 PATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQ 580 + C P + C++ N + + N + + V Sbjct 563 SSCFCSPDAFLGWSFDSCISNNRCNIFSNFIFNGINSGTTCSNDLLYSNTEISTGV--CV 620 Query 581 TLEILDIT-PCSFGGVSVITPGT-----------------------------NTSNQVAV 610 ++ IT F VS + A Sbjct 621 NYDLYGITGQGIFKEVSAAYYNNWQNLLYDSNGNIIGFKDFLTNKTYTILPCYSGRVSAA 680 Query 611 LYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVN--NSYECDIPIGA 668 YQ+ + + + + F + GC++ A ++ + CD+ +G+ Sbjct 681 FYQNSSSPALLYRNLKCSYVLNNISFISQPFYFDSYLGCVLNAVNLTSYSVSSCDLRMGS 740 Query 669 GICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNS---------IAIPTNFT 719 G C Y ++ +R + Y +V++ N+S I IPTNFT Sbjct 741 GFCIDYALPSSRRKRRGISS-----PYRFVTFEPFNVSFVNDSVETVGGLFEIQIPTNFT 795 Query 720 ISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQ 779 I+ E + S K ++DC+ ++C + C +LL +YG+FC +N L + D Sbjct 796 IAGHEEFIQTSSPKVTIDCSAFVCSNYAACHDLLSEYGTFCDNINSILNEVNDLLDITQL 855 Query 780 EVFAQVKQ------IYKTPPIKDFGGFNFSQI---LPDPSKPSKRSFIEDLLFNKVTLAD 830 +V + Q T D +F + L S RS +EDLLFNKV L+D Sbjct 856 QVANALMQGVTLSSNLNTNLHSDVDNIDFKSLLGCLGSQCGSSSRSLLEDLLFNKVKLSD 915 Query 831 AGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGA 890 GF++ Y +C G RDL+C Q FNG+ VLPP+L++ I+ YT+A + W+ A Sbjct 916 VGFVEAYNNCTGGSEIRDLLCVQSFNGIKVLPPILSETQISGYTTAATVAAMFPPWSAAA 975 Query 891 GAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQD 950 G +PF++ + YR NG+GVT +VL +NQKLIAN FN A+ IQ+ ++T SAL K+Q Sbjct 976 G----VPFSLNVQYRINGLGVTMDVLNKNQKLIANAFNKALLSIQNGFTATNSALAKIQS 1031 Query 951 VVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQ 1010 VVN NAQALN+L++QL + FGAISS L +ILSRLD +EA+VQIDRLI GRL +L YV+Q Sbjct 1032 VVNANAQALNSLLQQLFNKFGAISSSLQEILSRLDNLEAQVQIDRLINGRLTALNAYVSQ 1091 Query 1011 QLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPA 1070 QL I+A A+ A K++ECV QS R++FCG G H++S Q+AP+G++F+H +Y P Sbjct 1092 QLSDITLIKAGASRAIEKVNECVKSQSPRINFCGNGNHILSLVQNAPYGLLFIHFSYKPT 1151 Query 1071 QEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVV 1129 K +P +C G + P++G F+ W T ++Y P+ I+ N +C V Sbjct 1152 SFKTVLVSPGLCLSGDRGIAPKQGYFIKQNDSWMFTGSSYYYPEPISDKNVVFMNSCSVN 1211 Query 1130 IGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEV 1189 + P L F+ EL +FKNHTS +L S INA+ +++ E++ + E Sbjct 1212 FTKAPFIYLNNSIPNLSDFEAELSLWFKNHTSIAPNLTFNSHINATFLDLYYEMNVIQES 1271 Query 1190 AKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCS 1249 K+LN S I+L+E+G YE Y+KWPWYIWL + I +M+ +CC T C S Sbjct 1272 IKSLNSSFINLKEIGTYEMYVKWPWYIWLLIVILFIIFLMILFFICCCTGCGSA--CFSK 1329 Query 1250 CGSCCKFDEDDSEPVLK 1266 C +CC ++ V+K Sbjct 1330 CHNCCDEYGGHNDFVIK 1346 >sp|Q14EB0|SPIKE_CVHN2 Spike glycoprotein OS=Human coronavirus HKU1 (isolate N2) OX=443240 GN=S PE=3 SV=1 Length=1351 Score = 1092 bits (2823), Expect = 0.0, Method: Composition-based stats. Identities = 367/1394 (26%), Positives = 592/1394 (42%), Gaps = 176/1394 (13%) Query 1 MFVFLVLLPLVSSQCVNLTTRTQLPPAYTN------------SFTRGVYYP-DKVFRSSV 47 MF+ + +LP + + Y S G YY ++V+ ++ Sbjct 1 MFLIIFILPTTLAVIGDFNCTNSFINDYNKTIPRISEDVVDVSLGLGTYYVLNRVYLNTT 60 Query 48 LHSTQDLFLPFFSNVTWFHAIHVSGTNGTK--RFDNPVL-PFNDGVYFASTEKSNIIRGW 104 L T F + F + + G+ + P L FN+G+ F+ + + + Sbjct 61 LLFTGY----FPKSGANFRDLALKGSKYLSTLWYKPPFLSDFNNGI-FSKVKNTKLYVNN 115 Query 105 IFGTTLDSKTQSLLIVNNATNVV---------IKVCEFQFCNDPFLGVYYHKNNKSWMES 155 + + + VN + +V I C++ C P + S Sbjct 116 TLYSEFSTIVIGSVFVNTSYTIVVQPHNGILEITACQYTMCEYPHTVCK---SKGSIRNE 172 Query 156 EFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRD 215 + + SS C F+ + F ++ F F G F Y + Sbjct 173 SWHIDSSEPLCLFK---KNFTYNVSADWLY------FHFYQERGVFYAYYADVGM----- 218 Query 216 LPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTF 275 L L +G ++ + + ++ SS Y+V L R + Sbjct 219 ------PTTFLFSLYLGTILSHYYVMPLTCKAI------SSNTDNETLEYWVTPLSRRQY 266 Query 276 LLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVR-FPNITN 334 LL ++E+G IT+AVDC+ LSE +C +SF G+Y S F V+P ++ R PN+ + Sbjct 267 LLNFDEHGVITNAVDCSSSFLSEIQCKTQSFAPNTGVYDLSGFTVKPVATVYRRIPNLPD 326 Query 335 LCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTN 394 C N S W R+ SNC + S L +F C + +K+ CF + Sbjct 327 -CDIDNWLNNVSVPSPLNWERRIFSNCNFNLSTLLRLVHVDSFSCNNLDKSKIFGSCFNS 385 Query 395 VYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSN--------------- 439 + D F I + G +G + NYK+ + C + ++ Sbjct 386 ITVDKFAIPNRRRDDLQLGSSGFLQSSNYKIDISSSSCQLYYSLPLVNVTINNFNPSSWN 445 Query 440 ------------------------NLDSKVGGNYNYLYRLFRKSNL--------KPFERD 467 N D + + + + L K D Sbjct 446 RRYGFGSFNVSSYDVVYSDHCFSVNSDFCPCADPSVVNSCVKSKPLSAICPAGTKYRHCD 505 Query 468 ISTEIYQAGSTPCNGVEG-FNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL---LHAPAT 523 + T +Y C+ + + Y P + G+G + + + L+ + Sbjct 506 LDTTLYVNNWCRCSCLPDPISTYSPNTCPQKKVVVGIGEHCPGLGINEEKCGTQLNHSSC 565 Query 524 VCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLE 583 C P + C++ N + + N + + V + Sbjct 566 SCSPDAFLGWSFDSCISNNRCNIFSNFIFNGINSGTTCSNDLLYSNTEVSTGV--CVNYD 623 Query 584 ILDIT-PCSFGGVSVITPGTNTSNQVAVLYQDVNCTE----------------VPVAIHA 626 + IT F VS + + + V A + Sbjct 624 LYGITGQGIFKEVSAAYYNNWQNLLYDSNGNIIGFKDFLTNKTYTILPCYSGRVSAAFYQ 683 Query 627 DQLTPTWRVYS-------------TGSNVFQTRAGCLIGAEHVN--NSYECDIPIGAGIC 671 + +P + + F + GC++ A ++ + CD+ +G+G C Sbjct 684 NSSSPALLYRNLKCSYVLNNISFISQPFYFDSYLGCVLNAVNLTSYSVSSCDLRMGSGFC 743 Query 672 ASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNS---------IAIPTNFTISV 722 Y ++ +R + Y +V++ N+S I IPTNFTI+ Sbjct 744 IDYALPSSRRKRRGISS-----PYRFVTFEPFNVSFVNDSVETVGGLFEIQIPTNFTIAG 798 Query 723 TTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVF 782 E + S K ++DC+ ++C + C +LL +YG+FC +N L + D +V Sbjct 799 HEEFIQTSSPKVTIDCSAFVCSNYAACHDLLSEYGTFCDNINSILNEVNDLLDITQLQVA 858 Query 783 AQVKQ------IYKTPPIKDFGGFNFSQI---LPDPSKPSKRSFIEDLLFNKVTLADAGF 833 + Q T D +F + L S RS +EDLLFNKV L+D GF Sbjct 859 NALMQGVTLSSNLNTNLHSDVDNIDFKSLLGCLGSQCGSSSRSLLEDLLFNKVKLSDVGF 918 Query 834 IKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAA 893 ++ Y +C G RDL+C Q FNG+ VLPP+L++ I+ YT+A + W+ AG Sbjct 919 VEAYNNCTGGSEIRDLLCVQSFNGIKVLPPILSETQISGYTTAATVAAMFPPWSAAAG-- 976 Query 894 LQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVN 953 +PF++ + YR NG+GVT +VL +NQKLIAN FN A+ IQ+ ++T SAL K+Q VVN Sbjct 977 --VPFSLNVQYRINGLGVTMDVLNKNQKLIANAFNKALLSIQNGFTATNSALAKIQSVVN 1034 Query 954 QNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI 1013 NAQALN+L++QL + FGAISS L +ILSRLD +EA+VQIDRLI GRL +L YV+QQL Sbjct 1035 ANAQALNSLLQQLFNKFGAISSSLQEILSRLDNLEAQVQIDRLINGRLTALNAYVSQQLS 1094 Query 1014 RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEK 1073 I+A A+ A K++ECV QS R++FCG G H++S Q+AP+G++F+H +Y P K Sbjct 1095 DITLIKAGASRAIEKVNECVKSQSPRINFCGNGNHILSLVQNAPYGLLFIHFSYKPTSFK 1154 Query 1074 NFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGI 1132 +P +C G + P++G F+ W T ++Y P+ I+ N +C V Sbjct 1155 TVLVSPGLCLSGDRGIAPKQGYFIKQNDSWMFTGSSYYYPEPISDKNVVFMNSCSVNFTK 1214 Query 1133 VNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKN 1192 + P L F+ E +FKNHTS +L S INA+ +++ E++ + E K+ Sbjct 1215 APFIYLNNSIPNLSDFEAEFSLWFKNHTSIAPNLTFNSHINATFLDLYYEMNVIQESIKS 1274 Query 1193 LNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGS 1252 LN S I+L+E+G YE Y+KWPWYIWL + I +M+ +CC T C S C + Sbjct 1275 LNSSFINLKEIGTYEMYVKWPWYIWLLIVILFIIFLMILFFICCCTGCGSA--CFSKCHN 1332 Query 1253 CCKFDEDDSEPVLK 1266 CC ++ V+K Sbjct 1333 CCDEYGGHNDFVIK 1346 >sp|P25193|SPIKE_CVBQ Spike glycoprotein OS=Bovine coronavirus (strain Quebec) OX=11133 GN=S PE=3 SV=2 Length=1363 Score = 1091 bits (2822), Expect = 0.0, Method: Composition-based stats. Identities = 373/1410 (26%), Positives = 595/1410 (42%), Gaps = 199/1410 (14%) Query 2 FVFLVLLPLVSSQCVNLTTRTQL-------PPAYTN-----SFTRGVYYP-DKVFRSSVL 48 + L+ LP+ + +L T P+ + + G YY D+V+ ++ L Sbjct 3 LILLISLPMAFAVIGDLKCTTVSINDVDTGAPSISTDIVDVTNGLGTYYVLDRVYLNTTL 62 Query 49 HSTQDLFLPFFSNVTWFHAIHVSGTN--GTKRFDNPVL-PFNDGVYFASTEKSNIIRGWI 105 + P ++ + + + + GT F P L F +G+ FA + + +I+ + Sbjct 63 LLNG--YYP--TSGSTYRNMALKGTLLLSRLWFKPPFLSDFINGI-FAKVKNTKVIKKGV 117 Query 106 FGTTLDSKTQSLLIVNNATNVV-----------------IKVCEFQFCNDPFLGVYYHKN 148 + + T VN + +VV I VC++ C P H Sbjct 118 MYSEFPAITIGSTFVNTSYSVVVQPHTTNLDNKLQGLLEISVCQYTMCEYPHT--ICHPK 175 Query 149 NKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHT 208 + + + +C ++ + F D+ F F G F Y T Sbjct 176 LGNKRVELWHWDTGVVSCLYK---RNFTYDVNADYLY------FHFYQEGGTFYAYFTDT 226 Query 209 PINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVG 268 + + L ++ +G ++ + Y+ P SS T Y+V Sbjct 227 GV-----------VTKFLFNVYLGTVLSHY---------YVLPLTCSSAMT---LEYWVT 263 Query 269 YLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVR 328 L + +LL +N++G I +AVDC D +SE KC S G+Y+ + + VQP + R Sbjct 264 PLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELNGYTVQPIADVYR 323 Query 329 -FPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKL 387 PN+ + C N S W RK SNC + S L + +F C + K+ Sbjct 324 RIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQADSFTCNNIDAAKI 382 Query 388 NDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSN----NLDS 443 +CF+++ D F I + G G + +NY++ T C + +N ++ Sbjct 383 YGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTTATSCQLYYNLPAANVSVSR 442 Query 444 KVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQS--------- 494 +N + + KP + T + C C L Sbjct 443 FNPSTWNRRFGFTEQFVFKPQPVGVFTHHDVVYAQHCFKAPKNFCPCKLDGSLCVGNGPG 502 Query 495 -YGFQPTNGVGYQPYRV------------------------------------------- 510 +G+G P Sbjct 503 IDAGYKNSGIGTCPAGTNYLTCHNAAQCDCLCTPDPITSKSTGPYKCPQTKYLVGIGEHC 562 Query 511 --VVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRD 568 + + + C P+ + C+ + + + + N + Sbjct 563 SGLAIKSDYCGGNPCTCQPQAFLGWSVDSCLQGDRCNIFANFIFHDVNSGTTCSTDLQKS 622 Query 569 IADTTDAVRDPQTLEILDIT-PCSFGGVSVITPGTNTS----------------NQVAVL 611 D V ++ IT F V+ + + + Sbjct 623 NTDIILGV--CVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFM 680 Query 612 YQDVNCTEVPVAIHADQLTPTWRVYSTG-SNVFQTRAGCLIGAEHVNNSYECDIPIGAGI 670 + V A HA+ P + + VF + + +SY +G + Sbjct 681 IRSCYSGRVSAAFHANSSEPALLFRNIKCNYVFNNTLSRQLQPINYFDSY-----LGCVV 735 Query 671 CASYQTQTNSPRRARSVASQSIIAYT--------------MSLGAENSVAYSNNS----- 711 A T + +V S + Y+ + +V N+S Sbjct 736 NADNSTSSVVQTCDLTVGSGYCVDYSTKRRSRRAITTGYRFTNFEPFTVNSVNDSLEPVG 795 Query 712 ----IAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRAL 767 I IP+ FTI E + S K ++DC+ ++CGD C + L++YGSFC +N L Sbjct 796 GLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGSFCDNINAIL 855 Query 768 TGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGF-----NFSQILP----DPSKPSKRSF 817 T + D +V + + + + +KD F NFS +L +K S RS Sbjct 856 TEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSACNKVSSRSA 915 Query 818 IEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSAL 877 IEDLLF+KV L+D GF++ Y +C G RDLIC Q +NG+ VLPPLL+ I+ YT A Sbjct 916 IEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSVNQISGYTLAA 975 Query 878 LAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDS 937 + ++ + G +PF + + YR NGIGVT +VL +NQKLIAN FN+A+ IQ+ Sbjct 976 TSASLFPPLSAAVG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFNNALDAIQEG 1031 Query 938 LSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLI 997 +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +EA+ QIDRLI Sbjct 1032 FDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALEAQAQIDRLI 1091 Query 998 TGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAP 1057 GRL +L YV+QQL + ++ SA A K++ECV QS R++FCG G H++S Q+AP Sbjct 1092 NGRLTALNVYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNHIISLVQNAP 1151 Query 1058 HGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQRNFYEPQIIT 1116 +G+ F+H +YVP + +P +C G + P+ G FV+ W T +Y P+ IT Sbjct 1152 YGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGSGYYYPEPIT 1211 Query 1117 TDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASV 1176 +N V C V + + + P L FKEELD++FKN TS DL + IN + Sbjct 1212 GNNVVVMSTCAVNYTKAPDVMLNISTPNLHDFKEELDQWFKNQTSVAPDL-SLDYINVTF 1270 Query 1177 VNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCC 1236 +++Q E++RL E K LN+S I+L+++G YE Y+KWPWY+WL + G + M+ ++ Sbjct 1271 LDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGVAMLVLLFFI 1328 Query 1237 MTSCCSCLKGCCSCGSCCKFDEDDSEPVLK 1266 CG CC E V+K Sbjct 1329 CCCTGCGTSCFKICGGCCDDYTGHQELVIK 1358 >sp|Q5MQD0|SPIKE_CVHN1 Spike glycoprotein OS=Human coronavirus HKU1 (isolate N1) OX=443239 GN=S PE=1 SV=1 Length=1356 Score = 1050 bits (2716), Expect = 0.0, Method: Composition-based stats. Identities = 373/1393 (27%), Positives = 580/1393 (42%), Gaps = 171/1393 (12%) Query 1 MFVFLVLLPLVSSQCVNLTTRTQLPPAYTN----------SFTRGVYYP-DKVFRSSVLH 49 + +F++ L N T T S+ G YY D+V+ ++ + Sbjct 3 LIIFILPTTLAVIGDFNCTNFAINDLNTTVPRISEYVVDVSYGLGTYYILDRVYLNTTIL 62 Query 50 STQDLFLPFFSNVTWFHAIHVSGTNGTK--RFDNPVL-PFNDGVYFASTEKSNIIRGWIF 106 T F + F + + GT + P L FN+G+ F+ + + + Sbjct 63 FTGY----FPKSGANFRDLSLKGTTYLSTLWYQKPFLSDFNNGI-FSRVKNTKLYVNKTL 117 Query 107 GTTLDSKTQSLLIVNNATNVV---------IKVCEFQFCNDPFLGVYYHKNNKSWMESEF 157 + + + +NN+ +V I C++ C P + S + Sbjct 118 YSEFSTIVIGSVFINNSYTIVVQPHNGVLEITACQYTMCEYPHTICK---SKGSSRNESW 174 Query 158 RVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLP 217 S C F+ + F ++ F F G F Y + + Sbjct 175 HFDKSEPLCLFK---KNFTYNVSTDWLY------FHFYQERGTFYAYYADSGM------- 218 Query 218 QGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLL 277 L L +G ++ + L + SS Y+V L R +LL Sbjct 219 ----PTTFLFSLYLGTLLSHYYVLPLTCNAI------SSNTDNETLQYWVTPLSKRQYLL 268 Query 278 KYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVR-FPNITNLC 336 K++ G IT+AVDC+ SE +C KS G+Y S F V+P ++ R P++ + C Sbjct 269 KFDNRGVITNAVDCSSSFFSEIQCKTKSLLPNTGVYDLSGFTVKPVATVHRRIPDLPD-C 327 Query 337 PFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVY 396 + N S W RK SNC + S L +F C +K+ CF ++ Sbjct 328 DIDKWLNNFNVPSPLNWERKIFSNCNFNLSTLLRLVHTDSFSCNNFDESKIYGSCFKSIV 387 Query 397 ADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKV---GGNYNYLY 453 D F I + G +G + NYK+ + C + ++ ++ + + Sbjct 388 LDKFAIPNSRRSDLQLGSSGFLQSSNYKIDTTSSSCQLYYSLPAINVTINNYNPSSWNRR 447 Query 454 RLFRKSNLKPFERDISTEIYQAGSTPC---NGVEGFNCYF-----------PLQSYGFQP 499 F NL S + +T C +C Sbjct 448 YGFNNFNLSSHSVVYSRYCFSVNNTFCPCAKPSFASSCKSHKPPSASCPIGTNYRSCEST 507 Query 500 TNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTE----- 554 T R L + C KKS V C F GVL Sbjct 508 TVLDHTDWCRCSCLPDPITAYDPRSCSQKKSLVGVGEHCAGFGV-DEEKCGVLDGSYNVS 566 Query 555 ---SNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFG----GVSVITPGTNTSNQ 607 S FL + + + + I T CS V T + Sbjct 567 CLCSTDAFLGWSYDTCVSNNRCNIFSNFILNGINSGTTCSNDLLQPNTEVFTDVCVDYDL 626 Query 608 VAVLYQDV--NCTEVPVAIHADQLTPTW--------RVYSTGSNVFQTRAGCLIGAEHVN 657 + Q + + V + L + V + N+F AG + A H N Sbjct 627 YGITGQGIFKEVSAVYYNSWQNLLYDSNGNIIGFKDFVTNKTYNIFPCYAGRVSAAFHQN 686 Query 658 NS--------YECDIPIGA------------------------------------GICAS 673 S +C + G C Sbjct 687 ASSLALLYRNLKCSYVLNNISLTTQPYFDSYLGCVFNADNLTDYSVSSCALRMGSGFCVD 746 Query 674 YQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNS---------IAIPTNFTISVTT 724 Y + ++S R + + + +Y +V++ N+S I IPTNFTI Sbjct 747 YNSPSSSSSRRKRRSISA--SYRFVTFEPFNVSFVNDSIESVGGLYEIKIPTNFTIVGQE 804 Query 725 EILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQ 784 E + + K ++DC++++C + C +LL +YG+FC +N L + D V Sbjct 805 EFIQTNSPKVTIDCSLFVCSNYAACHDLLSEYGTFCDNINSILDEVNGLLDTTQLHVADT 864 Query 785 VKQ------IYKTPPIKDFGGFNFSQI---LPDPSKPSKRSFIEDLLFNKVTLADAGFIK 835 + Q T D NF + L S RSF EDLLF+KV L+D GF++ Sbjct 865 LMQGVTLSSNLNTNLHFDVDNINFKSLVGCLGPHCGSSSRSFFEDLLFDKVKLSDVGFVE 924 Query 836 QYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQ 895 Y +C G RDL+C Q FNG+ VLPP+L++ I+ YT+A + W+ AG Sbjct 925 AYNNCTGGSEIRDLLCVQSFNGIKVLPPILSESQISGYTTAATVAAMFPPWSAAAG---- 980 Query 896 IPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQN 955 IPF++ + YR NG+GVT +VL +NQKLIA FN+A+ IQ+ S+T SAL K+Q VVN N Sbjct 981 IPFSLNVQYRINGLGVTMDVLNKNQKLIATAFNNALLSIQNGFSATNSALAKIQSVVNSN 1040 Query 956 AQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRA 1015 AQALN+L++QL + FGAISS L +ILSRLD +EA+VQIDRLI GRL +L YV+QQL Sbjct 1041 AQALNSLLQQLFNKFGAISSSLQEILSRLDALEAQVQIDRLINGRLTALNAYVSQQLSDI 1100 Query 1016 AEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNF 1075 + ++ A LA K++ECV QS R++FCG G H++S Q+AP+G++F+H +Y P K Sbjct 1101 SLVKFGAALAMEKVNECVKSQSPRINFCGNGNHILSLVQNAPYGLLFMHFSYKPISFKTV 1160 Query 1076 TTAPAICHDGK-AHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVN 1134 +P +C G P++G F+ + HW T ++Y P+ I+ N C V Sbjct 1161 LVSPGLCISGDVGIAPKQGYFIKHNDHWMFTGSSYYYPEPISDKNVVFMNTCSVNFTKAP 1220 Query 1135 NTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG-DISGINASVVNIQKEIDRLNEVAKNL 1193 + P+L F+ EL +FKN TS +L ++ INA+ +++ E++ + E K+L Sbjct 1221 LVYLNHSVPKLSDFESELSHWFKNQTSIAPNLTLNLHTINATFLDLYYEMNLIQESIKSL 1280 Query 1194 NESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSC 1253 N S I+L+++G YE Y+KWPWY+WL I +++ +CC T C S C +C Sbjct 1281 NNSYINLKDIGTYEMYVKWPWYVWLLISFSFIIFLVLLFFICCCTGCGSAC--FSKCHNC 1338 Query 1254 CKFDEDDSEPVLK 1266 C + V+K Sbjct 1339 CDEYGGHHDFVIK 1351 >sp|Q9QAR5|SPIKE_CVBLS Spike glycoprotein OS=Bovine coronavirus (strain LSU-94LSS-051) OX=233261 GN=S PE=3 SV=1 Length=1363 Score = 995 bits (2571), Expect = 0.0, Method: Composition-based stats. Identities = 370/1372 (27%), Positives = 579/1372 (42%), Gaps = 149/1372 (11%) Query 9 PLVSSQCVNLTTRTQLPPAYTNSFTRGVYYP-DKVFRSSVLHSTQDLFLPFFSNVTWFHA 67 VS V+ + + G YY D+V+ ++ L + P ++ + + Sbjct 22 TTVSINDVDTGVPSISTDTVDVTNGLGTYYVLDRVYLNTTLLLNG--YYP--TSGSTYRN 77 Query 68 IHVSGTN--GTKRFDNPVL-PFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNAT 124 + + GT T F P L F +G+ FA + + +I+ + + + T VN + Sbjct 78 MALKGTLLLSTLWFKPPFLSDFTNGI-FAKVKNTKVIKDGVKYSEFPAITIGSTFVNTSY 136 Query 125 NVV-----------------IKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCT 167 +VV I VC++ C P + N + + + +C Sbjct 137 SVVVQPHTTNLDNKLQGLLEISVCQYTMCEYP--NTICNPNLGNQRVELWHWDTGVVSCL 194 Query 168 FEYVSQPFLMDLEGKQGNFKNLRE----------------FVFKNIDGYFKIYSKHTPIN 211 ++ + F D+ F +E F+F G + P+ Sbjct 195 YK---RNFTYDVNADYLYFHFYQEGGTFYAYFTDTGVVTKFLFNVYLGTVLSHYYVMPLT 251 Query 212 LVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQ 271 L + + A+ + + A + V L Sbjct 252 CNSALTLEYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELN 311 Query 272 PRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPN 331 T + I + DC ++ K E+ + NF + S ++ + Sbjct 312 GYTVQPIADVYRRIPNLPDCNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQADS 371 Query 332 IT----------NLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNS-ASFSTFKC- 379 T +C + + + Y +N + C Sbjct 372 FTCNNIDAAKIYGMCFSSITIDKFAIP---NGRKVDLQLGNLGYLQSFNYRIDTTATSCQ 428 Query 380 --YGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYN-------YKLPDDFT 430 Y + ++ F + E P G D++ +K P +F Sbjct 429 LYYNLPAANVSVSRFNPSTWNR-RFGFTEQSVFKPQPAGVFTDHDVVYAQHCFKAPTNFC 487 Query 431 GCVIAWNS------------NNLDSKVGGNYNYLYRLFRKSNLKPFERDI-----STEIY 473 C + + N + +T Y Sbjct 488 PCKLDGSLCVGSGSGIDAGYKNTGIGTCPAGTNYLTCHNAAQCGCLCTPDPITSKATGPY 547 Query 474 QAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPY--------------RVVVLSFELLH 519 + T G +C + N QP R + + +LH Sbjct 548 KCPQTKYLVGIGEHCSGLAIKSDYCGGNPCSCQPQAFLGWSVDSCLQGDRCNIFANFILH 607 Query 520 A--PATVCGP---KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTT 573 T C K +T+++ CVN++ G+TG G+ E N + +Q D Sbjct 608 DVNSGTTCSTDLQKSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNL 667 Query 574 DAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTW 633 RD T I C G VS S++ A+L+++ C V + QL P Sbjct 668 YGFRDYLTNRTFMIRSCYSGRVSAAFHAN--SSEPALLFRNFKCNYVFNNTLSRQLQPI- 724 Query 634 RVYSTGSNVFQTRAGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQS 691 N F + GC++ A++ +S CD+ +G+G C Y T RR+R + Sbjct 725 -------NYFDSYLGCVVNADNSTSSVVQTCDLTVGSGYCVDYST----KRRSRRSITTG 773 Query 692 IIAYTMSLGAENSVAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGD 745 NSV S I IP+ FTI E + S K ++DC+ ++CGD Sbjct 774 YRFTNFEPFTVNSVNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGD 833 Query 746 STECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN--- 801 C + L++YGSFC +N LT + D +V + + + + +KD FN Sbjct 834 YAACKSQLVEYGSFCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDD 893 Query 802 --FSQILP----DPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKF 855 FS +L D +K S RS IEDLLF+KV L+D GF++ Y +C G RDLIC Q + Sbjct 894 INFSPVLGCLGSDCNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSY 953 Query 856 NGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNV 915 NG+ VLPPLL++ I+ YT A + ++ W+ AG +PF + + YR NGIGVT +V Sbjct 954 NGIKVLPPLLSENQISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDV 1009 Query 916 LYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISS 975 L +NQKLIAN FN+A+G IQ+ +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS Sbjct 1010 LSQNQKLIANAFNNALGAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISS 1069 Query 976 VLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG 1035 L +ILSRLD +EA+ QIDRLI GRL +L YV+QQL + ++ SA A K++ECV Sbjct 1070 SLQEILSRLDALEAQAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKS 1129 Query 1036 QSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGV 1094 QS R++FCG G H++S Q+AP+G+ F+H +YVP + +P +C G + P+ G Sbjct 1130 QSSRINFCGNGNHIISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGY 1189 Query 1095 FVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDK 1154 FV+ W T +Y P+ IT +N V C V + + + P L FKEELD+ Sbjct 1190 FVNVNNTWMFTGSGYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLPDFKEELDQ 1249 Query 1155 YFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPW 1214 +FKN TS DL + IN + +++Q E++RL E K LN+S I+L+++G YE Y+KWPW Sbjct 1250 WFKNQTSVAPDL-SLDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPW 1308 Query 1215 YIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK 1266 Y+WL + G + M+ ++ CG CC E V+K Sbjct 1309 YVWL--LIGFAGVAMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQELVIK 1358 >sp|P25192|SPIKE_CVBLY Spike glycoprotein OS=Bovine coronavirus (strain LY-138) OX=11131 GN=S PE=3 SV=1 Length=1363 Score = 986 bits (2549), Expect = 0.0, Method: Composition-based stats. Identities = 374/1370 (27%), Positives = 587/1370 (43%), Gaps = 145/1370 (11%) Query 9 PLVSSQCVNLTTRTQLPPAYTNSFTRGVYYP-DKVFRSSVLHSTQDLFLPFFSNVTWFHA 67 VS V+ + + G YY D+V+ ++ L + P ++ + + Sbjct 22 TTVSINDVDTGVPSVSTDTVDVTNGLGTYYVLDRVYLNTTLLLNG--YYP--TSGSTYRN 77 Query 68 IHVSGTN--GTKRFDNPVL-PFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNAT 124 + + GT T F P L F +G+ FA + + +I+ + + + T VN + Sbjct 78 MALKGTLLLSTLWFKPPFLSDFINGI-FAKVKNTKVIKNGVMYSEFPAITIGSTFVNTSY 136 Query 125 NVV-----------------IKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCT 167 +VV I VC++ C P H N + + + +C Sbjct 137 SVVVQPHTTNLDNKLQGLLEISVCQYTMCEYPHT--ICHPNLGNRRIELWHWDTGVVSCL 194 Query 168 FEY-----VSQPFLM-----DLEGKQGNFKN---LREFVFKNIDGYFKIYSKHTPINLVR 214 ++ V+ +L + F + + +F+F G + P+ Sbjct 195 YKRNFTYDVNADYLYFHFYQEGGTFYAYFTDTGVVTKFLFNVYLGTVLSHYYVMPLTCNS 254 Query 215 DLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRT 274 + + + A+ + + A + V L T Sbjct 255 AMTLEYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELNGYT 314 Query 275 FLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNIT- 333 + I + DC ++ K E+ + NF + S ++ + T Sbjct 315 VQPIADVYRRIPNLPDCNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQADSFTC 374 Query 334 ---------NLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNS-ASFSTFKC---Y 380 +C + + + Y +N + C Y Sbjct 375 NNIDAAKIYGMCFSSITIDKFAIP---NGRKVDLQLGNLGYLQSFNYRIDTTATSCQLYY 431 Query 381 GVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYN-------YKLPDDFTGCV 433 + ++ F + E P G D++ +K P +F C Sbjct 432 NLPAANVSVSRFNPSTWNR-RFGFTEQSVFKPQPVGVFTDHDVVYAQHCFKAPTNFCPCK 490 Query 434 I-------------AWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDI-----STEIYQA 475 + A N+ NYL + ST Y+ Sbjct 491 LDGSLCVGSGSGIDAGYKNSGIGTCPAGTNYLT-CHNAAQCDCLCTPDPITSKSTGPYKC 549 Query 476 GSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPY--------------RVVVLSFELLHA- 520 T G +C + N QP R + + +LH Sbjct 550 PQTKYLVGIGEHCSGLAIKSDYCGGNPCTCQPQAFLGWSVDSCLQGDRCNIFANFILHDV 609 Query 521 -PATVCGP---KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDA 575 T C K +T+++ CVN++ G+TG G+ E N + +Q D Sbjct 610 NSGTTCSTDLQKSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYG 669 Query 576 VRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV 635 RD T I C G VS S++ A+L++++ C V + QL P Sbjct 670 FRDYLTNRTFMIRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--- 724 Query 636 YSTGSNVFQTRAGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSII 693 N F + GC++ A++ +S CD+ +G+G C Y T RR+R + Sbjct 725 -----NYFDSYLGCVVNADNSTSSAVQTCDLTVGSGYCVDYST----KRRSRRAITTGYR 775 Query 694 AYTMSLGAENSVAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDST 747 NSV S I IP+ FTI E + +S K ++DC+ ++CGD Sbjct 776 FTNFEPFTVNSVNDSLEPVGGLYEIQIPSEFTIGNMEEFIQISSPKVTIDCSAFVCGDYA 835 Query 748 ECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN----- 801 C + L++YGSFC +N LT + D +V + + + + +KD FN Sbjct 836 ACKSQLVEYGSFCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDIN 895 Query 802 FSQILP----DPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNG 857 FS +L D +K S RS IEDLLF+KV L+D GF++ Y +C G RDLIC Q +NG Sbjct 896 FSPVLGCLGSDCNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNG 955 Query 858 LTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLY 917 + VLPPLL++ I+ YT A + ++ W+ AG +PF + + YR NGIGVT +VL Sbjct 956 IKVLPPLLSENQISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLS 1011 Query 918 ENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVL 977 +NQKLIAN FN+A+ IQ+ +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L Sbjct 1012 QNQKLIANAFNNALDAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSL 1071 Query 978 NDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQS 1037 +ILSRLD +EA+ QIDRLI GRL +L YV+QQL + ++ SA A K++ECV QS Sbjct 1072 QEILSRLDALEAQAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQS 1131 Query 1038 KRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFV 1096 R++FCG G H++S Q+AP+G+ F+H +YVP + +P +C G + P+ G FV Sbjct 1132 SRINFCGNGNHIISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFV 1191 Query 1097 SNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYF 1156 + W T +Y P+ IT +N V C V + + + P L FKEELD++F Sbjct 1192 NVNNTWMFTGSGYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLPDFKEELDQWF 1251 Query 1157 KNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYI 1216 KN TS DL + IN + +++Q E++RL E K LN+S I+L+++G YE Y+KWPWY+ Sbjct 1252 KNQTSVAPDL-SLDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYV 1310 Query 1217 WLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK 1266 WL + GL + M+ ++ CG CC E V+K Sbjct 1311 WL--LIGLAGVAMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQELVIK 1358 >sp|Q8V436|SPIKE_CVBLU Spike glycoprotein OS=Bovine coronavirus (strain 98TXSF-110-LUN) OX=233264 GN=S PE=3 SV=1 Length=1363 Score = 985 bits (2546), Expect = 0.0, Method: Composition-based stats. Identities = 371/1370 (27%), Positives = 583/1370 (43%), Gaps = 145/1370 (11%) Query 9 PLVSSQCVNLTTRTQLPPAYTNSFTRGVYYP-DKVFRSSVLHSTQDLFLPFFSNVTWFHA 67 VS V+ + + G YY D+V+ ++ L + P ++ + + Sbjct 22 TTVSINDVDTGVPSISTDTVDVTKGLGTYYVLDRVYLNTTLLLNG--YYP--TSGSTYRN 77 Query 68 IHVSGTN--GTKRFDNPVL-PFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNAT 124 + + GT T F P L F +G+ FA + + +I+ + + + T VN + Sbjct 78 MALKGTLLLSTLWFKPPFLSDFTNGI-FAKVKNTKVIKDGVMYSEFPAITIGSTFVNTSY 136 Query 125 NVV-----------------IKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCT 167 +VV I VC++ C P + N + + + +C Sbjct 137 SVVVQPHTTILGNKLQGFLEISVCQYTMCEYP--NTICNPNLGNRRVELWHWDTGVVSCL 194 Query 168 FEY-----VSQPFLM-----DLEGKQGNFKN---LREFVFKNIDGYFKIYSKHTPINLVR 214 ++ V+ +L + F + + +F+F G + P+ Sbjct 195 YKRNFTYDVNADYLYFHFYQEGGTFYAYFTDTGVVTKFLFNVYLGTVLSHYYVMPLTCNS 254 Query 215 DLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRT 274 L + + A+ + + A + V L T Sbjct 255 ALTLEYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELNGYT 314 Query 275 FLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNIT- 333 + I + DC ++ K E+ + NF + S ++ + T Sbjct 315 VQPIADVYRRIPNLPDCNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQADSFTC 374 Query 334 ---------NLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNS-ASFSTFKC---Y 380 +C + + + Y +N + C Y Sbjct 375 NNIDAAKIYGMCFSSITIDKFAIP---NGRKVDLQLGNLGYLQSFNYRIDTTATSCQLYY 431 Query 381 GVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYN-------YKLPDDFTGCV 433 + ++ F + E P G D++ +K P +F C Sbjct 432 NLPAANVSVSRFNPSTWNR-RFGFTEQSVFKPQPAGVFTDHDVVYAQHCFKAPTNFCPCK 490 Query 434 I-------------AWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDI-----STEIYQA 475 + A + NYL + +T Y+ Sbjct 491 LDGSLCVGNGPGIDAGYKTSGIGTCPAGTNYLT-CHNAAQCDCLCTPDPITSKATGPYKC 549 Query 476 GSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPY--------------RVVVLSFELLHA- 520 T G +C N QP R + + +LH Sbjct 550 PQTKYLVGIGEHCSGLAIKSDHCGGNPCTCQPQAFLGWSVDSCLQGDRCNIFANFILHDV 609 Query 521 -PATVCGP---KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDA 575 T C K +T+++ CVN++ G+TG G+ E N + +Q D Sbjct 610 NSGTTCSTDLQKSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYG 669 Query 576 VRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV 635 RD T I C G VS S++ A+L++++ C V + QL P Sbjct 670 FRDYLTNRTFMIRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--- 724 Query 636 YSTGSNVFQTRAGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSII 693 N F + GC++ A++ +S CD+ +G+G C Y T RR+R + Sbjct 725 -----NYFDSYLGCVVNADNSTSSVVQTCDLTVGSGYCVDYST----KRRSRRSITTGYR 775 Query 694 AYTMSLGAENSVAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDST 747 NSV S I IP+ FTI E + S K ++DC+ ++CGD Sbjct 776 FTNFEPFTVNSVNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYA 835 Query 748 ECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN----- 801 C + L++YGSFC +N LT + D +V + + + + +KD FN Sbjct 836 ACKSQLVEYGSFCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDIN 895 Query 802 FSQILP----DPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNG 857 FS +L D +K S RS IEDLLF+KV L+D GF++ Y +C G RDLIC Q +NG Sbjct 896 FSPVLGCLGSDCNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNG 955 Query 858 LTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLY 917 + VLPPLL++ I+ YT A + ++ W+ AG +PF + + YR NGIGVT +VL Sbjct 956 IKVLPPLLSENQISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLS 1011 Query 918 ENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVL 977 +NQKLIAN FN+A+G IQ+ +T SAL K+Q VVN NA+ LN L++QLS+ FGAISS L Sbjct 1012 QNQKLIANAFNNALGAIQEGFDATNSALVKIQAVVNANAETLNNLLQQLSNRFGAISSSL 1071 Query 978 NDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQS 1037 +ILSRLD +EA+ QIDRLI GRL +L YV+QQL + ++ SA A K++ECV QS Sbjct 1072 QEILSRLDALEAQAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQS 1131 Query 1038 KRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHD-GKAHFPREGVFV 1096 R++FCG G H++S Q+AP+G+ F+H +YVP + +P +C G+ P+ G FV Sbjct 1132 SRINFCGNGNHIISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGGRGIAPKSGYFV 1191 Query 1097 SNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYF 1156 + W T +Y P+ IT +N V C V + + + P L FKEELD++F Sbjct 1192 NVNNTWMFTGSGYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLPDFKEELDQWF 1251 Query 1157 KNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYI 1216 KN TS DL + IN + +++Q E++RL E K LN+S I+L+++G YE Y+KWPWY+ Sbjct 1252 KNQTSVAPDL-SLDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYV 1310 Query 1217 WLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK 1266 WL + G + M+ ++ CG CC E V+K Sbjct 1311 WL--LIGFAGVAMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQELVIK 1358 >sp|Q9QAQ8|SPIKE_CVBOK Spike glycoprotein OS=Bovine coronavirus (strain OK-0514) OX=231432 GN=S PE=3 SV=1 Length=1363 Score = 984 bits (2544), Expect = 0.0, Method: Composition-based stats. Identities = 371/1376 (27%), Positives = 588/1376 (43%), Gaps = 157/1376 (11%) Query 9 PLVSSQCVNLTTRTQLPPAYTNSFTRGVYYP-DKVFRSSVLHSTQDLFLPFFSNVTWFHA 67 VS V+ + + G YY D+V+ ++ L + P ++ + + Sbjct 22 TTVSINDVDTGVPSISTDTVDVTNGLGTYYVLDRVYLNTTLLLNG--YYP--TSGSTYRN 77 Query 68 IHVSGTN--GTKRFDNPVL-PFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNAT 124 + + GT T F P L F +G+ FA + + +I+ + + + T VN + Sbjct 78 MALKGTLLLSTLWFKPPFLSDFTNGI-FAKVKNTKVIKDGVKYSEFPAITIGSTFVNTSY 136 Query 125 NVV-----------------IKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCT 167 +VV I VC++ C P + N + + + +C Sbjct 137 SVVVQPHTTNLDNKLQGLLEISVCQYTMCEYP--NTICNPNLGNQRVELWHWDTGVVSCL 194 Query 168 FEY-----VSQPFLM-----DLEGKQGNFKN---LREFVFKNIDGYFKIYSKHTPINLVR 214 ++ V+ +L + F + + +F+F G + P+ Sbjct 195 YKRNFTYDVNADYLYFHFYQEGGTFYAYFTDTGVVTKFLFNVYLGTVLSHYYVMPLTCNS 254 Query 215 DLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRT 274 + + + A+ + + A + V L T Sbjct 255 AMTLEYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELNGYT 314 Query 275 FLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNIT- 333 + I + DC ++ K E+ + NF + S ++ + T Sbjct 315 VQPIADVYRRIPNLPDCNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQADSFTC 374 Query 334 ---------NLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNS-ASFSTFKC---Y 380 +C + + + Y +N + C Y Sbjct 375 NNIDAAKIYGMCFSSITIDKFAIP---NGRKVDLQLGNLGYLQSFNYRIDTTATSCQLYY 431 Query 381 GVSPTKLNDLCFT-NVYADSFVIRGDEVRQIAPGQTGKIADYN-------YKLPDDFTGC 432 + ++ F +++ F E P G D++ +K P +F C Sbjct 432 NLPAANVSVSRFNPSIWNRRFGF--TEQSVFKPQPAGVFTDHDVVYAQHCFKAPTNFCPC 489 Query 433 VI-------------AWNSNNLDSKVGGNYNYL------------------------YRL 455 + A N NYL Y+ Sbjct 490 KLDGSLCVGSGSGIDAGYKNTGIGTCPAGTNYLTCHNAAQCGCLCTPDPITSKATGPYKC 549 Query 456 FRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSF 515 + L S ++ N P G+ + + R + + Sbjct 550 PQTKYLVGIGEHCSGLAIKSDYCGGNPCSC----RPQAFLGWSVDSCLQGD--RCNIFAN 603 Query 516 ELLHA--PATVCGP---KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDI 569 +LH T C K +T+++ CVN++ G+TG G+ E N + +Q D Sbjct 604 FILHDVNSGTTCSTDLQKSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDS 663 Query 570 ADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQL 629 RD T I C G VS S++ A+L++++ C V + QL Sbjct 664 NGNLYGFRDYLTNRTFMIRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQL 721 Query 630 TPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSV 687 P N F + GC++ A++ +S CD+ +G+G C Y T RR+R Sbjct 722 QPI--------NYFDSYLGCVVNADNSTSSVVQTCDLTVGSGYCVDYST----KRRSRRS 769 Query 688 ASQSIIAYTMSLGAENSVAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMY 741 + NSV S I IP+ FTI E + S K ++DC+ + Sbjct 770 ITTGYRFTNFEPFTVNSVNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAF 829 Query 742 ICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGF 800 +CGD C + L++YGSFC +N LT + D +V + + + + +KD F Sbjct 830 VCGDYAACKSQLVEYGSFCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNF 889 Query 801 N-----FSQILP----DPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLIC 851 N FS +L D +K S RS IEDLLF+KV L+D GF++ Y +C G RDLIC Sbjct 890 NVDDINFSPVLGCLGSDCNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLIC 949 Query 852 AQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGV 911 Q +NG+ VLPPLL++ I+ YT A + ++ W+ AG +PF + + YR NGIGV Sbjct 950 VQSYNGIKVLPPLLSENQISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGV 1005 Query 912 TQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFG 971 T +VL +NQKLIAN FN+A+G IQ+ +T SAL K+Q VVN NA+ALN L++QLS+ FG Sbjct 1006 TMDVLSQNQKLIANAFNNALGAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFG 1065 Query 972 AISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSE 1031 AISS L +ILSRLD +EA+ QIDRLI GRL +L YV+QQL + ++ SA A K++E Sbjct 1066 AISSSLQEILSRLDALEAQAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNE 1125 Query 1032 CVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFP 1090 CV QS R++FCG G H++S Q+AP+G+ F+H +YVP + +P +C G + P Sbjct 1126 CVKSQSSRINFCGNGNHIISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAP 1185 Query 1091 REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKE 1150 + G FV+ W T +Y P+ IT +N V C V + + + P L FKE Sbjct 1186 KSGYFVNVNNTWMFTGSGYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLPDFKE 1245 Query 1151 ELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYI 1210 ELD++FKN TS DL + IN + +++Q E++RL E K LN+S I+L+++G YE Y+ Sbjct 1246 ELDQWFKNQTSVAPDL-SLDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYV 1304 Query 1211 KWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK 1266 KWPWY+WL + G + M+ ++ CG CC E V+K Sbjct 1305 KWPWYVWL--LIGFAGVAMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQELVIK 1358 >sp|P36334|SPIKE_CVHOC Spike glycoprotein OS=Human coronavirus OC43 OX=31631 GN=S PE=1 SV=1 Length=1353 Score = 963 bits (2488), Expect = 0.0, Method: Composition-based stats. Identities = 360/1375 (26%), Positives = 577/1375 (42%), Gaps = 149/1375 (11%) Query 3 VFLVLLPLVSSQCVNLTTRTQLPPAYTNS----FTRGVYYP-DKVFRSSVLHSTQDLFLP 57 F V+ L + T PP T++ G YY D+V+ ++ L + P Sbjct 12 AFAVIGDLKCTSDNINDKDTGPPPISTDTVDVTNGLGTYYVLDRVYLNTTLFLNG--YYP 69 Query 58 FFSNVTWFHAIHVSGTN--GTKRFDNPVL-PFNDGVYFASTEKSNIIRGWIFGTTLDSKT 114 ++ + + + + G+ F P L F +G+ FA + + +I+ + + + T Sbjct 70 --TSGSTYRNMALKGSVLLSRLWFKPPFLSDFINGI-FAKVKNTKVIKDRVMYSEFPAIT 126 Query 115 QSLLIVNNATNVVI---------------------KVCEFQFCNDPFLGVYYHKNNKSWM 153 VN + +VV+ VC++ C P H N + Sbjct 127 IGSTFVNTSYSVVVQPRTINSTQDGDNKLQGLLEVSVCQYNMCEYPQT--ICHPNLGNHR 184 Query 154 ESEFRV------YSSANNCTF----EYVSQPFLMDLEGKQGNFKN---LREFVFKNIDGY 200 + + + N T+ +Y+ F + F + + +F+F G Sbjct 185 KELWHLDTGVVSCLYKRNFTYDVNADYLYFHFYQEGGTFYAYFTDTGVVTKFLFNVYLGM 244 Query 201 FKIYSKHTPINLVRDLPQGFSAL-----EPLVDLPIGINITRFQTLLALHRSYLTPGDSS 255 + P+ L + + L+ I + ++ S + Sbjct 245 ALSHYYVMPLTCNSKLTLEYWVTPLTSRQYLLAFNQDGIIFNAEDCMSDFMSEI-----K 299 Query 256 SGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQT 315 + A V L T + + +C ++ K E+ + Sbjct 300 CKTQSIAPPTGVYELNGYTVQPIADVYRRKPNLPNCNIEAWLNDKSVPSPLNWERKTFSN 359 Query 316 SNFRVQPTESIVRFPNIT----------NLCPFGEVFNATRFASVYAWNRKRISNCVADY 365 NF + S ++ + T +C + + + Y Sbjct 360 CNFNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIP---NGRKVDLQLGNLGY 416 Query 366 SVLYNS-ASFSTFKC---YGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADY 421 +N + C Y + ++ F + E P G + ++ Sbjct 417 LQSFNYRIDTTATSCQLYYNLPAANVSVSRFNPSTWNK-RFGFIEDSVFKPRPAGVLTNH 475 Query 422 N-------YKLPDDFTGCVI-----------------------AWNSNNLDSKVGGNYNY 451 + +K P +F C + +NL + + Sbjct 476 DVVYAQHCFKAPKNFCPCKLNGSCVGSGPGKNNGIGTCPAGTNYLTCDNLCTPDPITFTG 535 Query 452 LYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVV 511 Y+ + +L S ++ N L G + Sbjct 536 TYKCPQTKSLVGIGEHCSGLAVKSDYCGGNSCT-CRPQAFLGWSADSCLQGDKCNIFANF 594 Query 512 VLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIA 570 +L + K +T+++ CVN++ G+ G G+ E N + +Q D Sbjct 595 ILHDVNSGLTCSTDLQKANTDIILGVCVNYDLYGILGQGIFVEVNATYYNSWQNLLYDSN 654 Query 571 DTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLT 630 RD I C G VS S++ A+L++++ C V QL Sbjct 655 GNLYGFRDYIINRTFMIRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNSLTRQLQ 712 Query 631 PTWRVYSTGSNVFQTRAGCLIGAEHVN--NSYECDIPIGAGICASYQTQTNSPRRARSVA 688 P N F + GC++ A + + CD+ +G+G C Y RR+R Sbjct 713 PI--------NYFDSYLGCVVNAYNSTAISVQTCDLTVGSGYCVDYSKN----RRSRGAI 760 Query 689 SQSIIAYTMSLGAENSVAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYI 742 + NSV S I IP+ FTI E + S K ++DC ++ Sbjct 761 TTGYRFTNFEPFTVNSVNDSLEPVGGLYEIQIPSEFTIGNMVEFIQTSSPKVTIDCAAFV 820 Query 743 CGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN 801 CGD C + L++YGSFC +N LT + D +V + + + + +KD FN Sbjct 821 CGDYAACKSQLVEYGSFCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFN 880 Query 802 -----FSQILP----DPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICA 852 FS +L + SK S RS IEDLLF+KV L+D GF++ Y +C G RDLIC Sbjct 881 VDDINFSPVLGCLGSECSKASSRSAIEDLLFDKVKLSDVGFVEAYNNCTGGAEIRDLICV 940 Query 853 QKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVT 912 Q + G+ VLPPLL++ I+ YT A + ++ WT AG +PF + + YR NG+GVT Sbjct 941 QSYKGIKVLPPLLSENQISGYTLAATSASLFPPWTAAAG----VPFYLNVQYRINGLGVT 996 Query 913 QNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGA 972 +VL +NQKLIAN FN+A+ IQ+ +T SAL K+Q VVN NA+ALN L++QLS+ FGA Sbjct 997 MDVLSQNQKLIANAFNNALYAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGA 1056 Query 973 ISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSEC 1032 IS+ L +ILSRLD +EAE QIDRLI GRL +L YV+QQL + ++ SA A K++EC Sbjct 1057 ISASLQEILSRLDALEAEAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNEC 1116 Query 1033 VLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPR 1091 V QS R++FCG G H++S Q+AP+G+ F+H +YVP + +P +C G + P+ Sbjct 1117 VKSQSSRINFCGNGNHIISLVQNAPYGLYFIHFSYVPTKYVTARVSPGLCIAGDRGIAPK 1176 Query 1092 EGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEE 1151 G FV+ W T +Y P+ IT +N V C V + + P L FKEE Sbjct 1177 SGYFVNVNNTWMYTGSGYYYPEPITENNVVVMSTCAVNYTKAPYVMLNTSIPNLPDFKEE 1236 Query 1152 LDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIK 1211 LD++FKN TS DL + IN + +++Q E++RL E K LN+S I+L+++G YE Y+K Sbjct 1237 LDQWFKNQTSVAPDL-SLDYINVTFLDLQVEMNRLQEAIKVLNQSYINLKDIGTYEYYVK 1295 Query 1212 WPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK 1266 WPWY+WL + L + M+ ++ CG CC E V+K Sbjct 1296 WPWYVWL--LICLAGVAMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGYQELVIK 1348 >sp|P25194|SPIKE_CVBV Spike glycoprotein OS=Bovine coronavirus (strain vaccine) OX=11134 GN=S PE=3 SV=1 Length=1363 Score = 924 bits (2388), Expect = 0.0, Method: Composition-based stats. Identities = 302/870 (35%), Positives = 444/870 (51%), Gaps = 56/870 (6%) Query 422 NYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCN 481 NY + C + + SK G Y+ + L S ++ N Sbjct 520 NYLTCHNAAQCDCLCTPDPITSKSTGP----YKCPQTKYLVGIGEHCSGLAIKSDYCGGN 575 Query 482 GVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHA--PATVCGP---KKSTNLVKN 536 P G+ + + R + + +LH T C K +T+++ Sbjct 576 PC----TCQPQAFLGWSVDSCLQGD--RCNIFANFILHDVNSGTTCSTDLQKSNTDIILG 629 Query 537 KCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGV 595 CVN++ G+TG G+ E N + +Q D RD T I C G V Sbjct 630 VCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFMIRSCYSGRV 689 Query 596 SVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEH 655 S S++ A+L++++ C V + QL P N F + GC++ A++ Sbjct 690 SAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSYLGCVVNADN 739 Query 656 VNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNN--- 710 +S CD+ +G+G C Y T RR+R + NSV S Sbjct 740 STSSVVQTCDLTVGSGYCVDYST----KRRSRRAITTGYRFTNFEPFTVNSVNDSLEPVG 795 Query 711 ---SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRAL 767 I IP+ FTI E + S K ++DC+ ++CGD C + L++YGSFC +N L Sbjct 796 GLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGSFCDNINAIL 855 Query 768 TGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN-----FSQILP----DPSKPSKRSF 817 T + D +V + + + + +KD FN FS +L D +K S RS Sbjct 856 TEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSDCNKVSSRSA 915 Query 818 IEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSAL 877 IEDLLF+KV L+D GF++ Y +C G RDLIC Q +NG+ VLPPLL+ I+ YT A Sbjct 916 IEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSVNQISGYTLAA 975 Query 878 LAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDS 937 + ++ W+ AG +PF + + YR NGIGVT +VL +NQKLIAN FN+A+ IQ+ Sbjct 976 TSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFNNALDAIQEG 1031 Query 938 LSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLI 997 +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +EA+ QIDRLI Sbjct 1032 FDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALEAQAQIDRLI 1091 Query 998 TGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAP 1057 GRL +L YV+QQL + ++ SA A K++ECV QS R++FCG G H++S Q+AP Sbjct 1092 NGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNHIISLVQNAP 1151 Query 1058 HGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQRNFYEPQIIT 1116 +G+ F+H +YVP + +P +C G + P+ G FV+ W T +Y P+ IT Sbjct 1152 YGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGSGYYYPEPIT 1211 Query 1117 TDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASV 1176 +N V C V + + + P L FKEELD++FKN TS DL + IN + Sbjct 1212 GNNVVVMSTCAVNYTKAPDVMLNISTPNLHDFKEELDQWFKNQTSVAPDL-SLDYINVTF 1270 Query 1177 VNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCC 1236 +++Q E++RL E K LN+S I+L+++G YE Y+KWPWY+WL + G + M+ ++ Sbjct 1271 LDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGVAMLVLLFFI 1328 Query 1237 MTSCCSCLKGCCSCGSCCKFDEDDSEPVLK 1266 CG CC E V+K Sbjct 1329 CCCTGCGTSCFKICGGCCDDYTGHQELVIK 1358 Score = 365 bits (936), Expect = 1e-104, Method: Composition-based stats. Identities = 113/564 (20%), Positives = 200/564 (35%), Gaps = 76/564 (13%) Query 9 PLVSSQCVNLTTRTQLPPAYTNSFTRGVYYP-DKVFRSSVLHSTQDLFLPFFSNVTWFHA 67 VS V+ + + G YY D+V+ ++ L + P ++ + + Sbjct 22 TTVSINDVDTGAPSISTDTVDVTNGLGTYYVLDRVYLNTTLLLNG--YYP--TSGSTYRN 77 Query 68 IHVSGTN--GTKRFDNPVL-PFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNAT 124 + + GT F P L F +G+ FA + + +I+ + + + T VN + Sbjct 78 MALKGTLLLSRLWFKPPFLSDFINGI-FAKVKNTKVIKKGVMYSEFPAITIGSTFVNTSY 136 Query 125 NVV-----------------IKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCT 167 +VV I VC++ C P H N + + + +C Sbjct 137 SVVVQPHTTNLDNKLQGLLEISVCQYTMCEYPHT--ICHPNLGNQRVELWHWDTGVVSCL 194 Query 168 FEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLV 227 ++ + F D+ F F G F Y T + + L Sbjct 195 YK---RNFTYDVNADYLY------FHFYQEGGTFYAYFTDTGV-----------VTKFLF 234 Query 228 DLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITD 287 ++ +G ++ + Y+ P S T Y+V L + +LL +N++G I + Sbjct 235 NVYLGTVLSHY---------YVLPLTCYSAMT---LEYWVTPLTSKQYLLAFNQDGVIFN 282 Query 288 AVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVR-FPNITNLCPFGEVFNATR 346 AVDC D +SE KC S G+Y+ + + VQP + R PN+ + C N Sbjct 283 AVDCKSDFMSEIKCKTLSIAPSTGVYELNGYTVQPIADVYRRIPNLPD-CNIEAWLNDKS 341 Query 347 FASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDE 406 S W RK SNC + S L + +F C + K+ +CF+++ D F I Sbjct 342 VPSPLNWERKTFSNCNFNMSSLMSFIQADSFTCNNIEAAKIYGMCFSSITIDKFAIPNGR 401 Query 407 VRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSN----NLDSKVGGNYNYLYRLFRKSNLK 462 + G G + +NY++ C + +N ++ +N + +S K Sbjct 402 KVDLQLGNLGYLQSFNYRIDTTAASCQLYYNLPAANVSVSRFNPSTWNRRFGFTEQSVFK 461 Query 463 PFERDISTEIYQAGSTPCNGVEGFNCYFPLQS----------YGFQPTNGVGYQPYRVVV 512 P + T + C C L +G+G P Sbjct 462 PQPVGVFTHHDVVYAQHCFKAPTNFCPCKLDGSLCVGNGPGIDAGYKNSGIGTCPAGTNY 521 Query 513 LSFELLHAPATVCGPKKSTNLVKN 536 L+ +C P T+ Sbjct 522 LTCHNAAQCDCLCTPDPITSKSTG 545 >sp|Q91A26|SPIKE_CVBEN Spike glycoprotein OS=Bovine coronavirus (strain 98TXSF-110-ENT) OX=233262 GN=S PE=3 SV=1 Length=1363 Score = 924 bits (2387), Expect = 0.0, Method: Composition-based stats. Identities = 303/870 (35%), Positives = 446/870 (51%), Gaps = 56/870 (6%) Query 422 NYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCN 481 NY + C + + SK G Y+ + L S ++ N Sbjct 520 NYLTCHNAAQCDCLCTPDPITSKATGP----YKCPQTKYLVGIGEHCSGLAIKSDHCGGN 575 Query 482 GVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHA--PATVCGP---KKSTNLVKN 536 P G+ + + R + + +LH T C K +T+++ Sbjct 576 PC----TCQPQAFLGWSVDSCLQGD--RCNIFANFILHDVNSGTTCSTDLQKSNTDIILG 629 Query 537 KCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGV 595 CVN++ G+TG G+ E N + +Q D RD T I C G V Sbjct 630 VCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFMIRSCYSGRV 689 Query 596 SVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEH 655 S S++ A+L++++ C V + QL P N F + GC++ A++ Sbjct 690 SAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSYLGCVVNADN 739 Query 656 VNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNN--- 710 +S CD+ +G+G C Y T RR+R + NSV S Sbjct 740 STSSVVQTCDLTVGSGYCVDYST----KRRSRRSITTGYRFTNFEPFTVNSVNDSLEPVG 795 Query 711 ---SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRAL 767 I IP+ FTI E + S K ++DC+ ++CGD C + L++YGSFC +N L Sbjct 796 GLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGSFCDNINAIL 855 Query 768 TGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN-----FSQILP----DPSKPSKRSF 817 T + D +V + + + + +KD FN FS +L D +K S RS Sbjct 856 TEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSDCNKVSSRSA 915 Query 818 IEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSAL 877 IEDLLF+KV L+D GF++ Y +C G RDLIC Q +NG+ VLPPLL++ I+ YT A Sbjct 916 IEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSENQISGYTLAA 975 Query 878 LAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDS 937 + ++ W+ AG +PF + + YR NGIGVT +VL +NQKLIAN FN+A+G IQ+ Sbjct 976 TSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFNNALGAIQEG 1031 Query 938 LSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLI 997 +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +EA+ QIDRLI Sbjct 1032 FDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALEAQAQIDRLI 1091 Query 998 TGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAP 1057 GRL +L YV+QQL + ++ SA A K++ECV QS R++FCG G H++S Q+AP Sbjct 1092 NGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNHIISLVQNAP 1151 Query 1058 HGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQRNFYEPQIIT 1116 +G+ F+H +YVP + +P +C G + P+ G FV+ W T +Y P+ IT Sbjct 1152 YGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGSGYYYPEPIT 1211 Query 1117 TDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASV 1176 +N V C V + + + P L FKEELD++FKN TS DL + IN + Sbjct 1212 GNNVVVMSTCAVNYTKAPDVMLNISTPNLPYFKEELDQWFKNQTSVAPDL-SLDYINVTF 1270 Query 1177 VNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCC 1236 +++Q E++RL E K LN+S I+L+++G YE Y+KWPWY+WL + G + M+ ++ Sbjct 1271 LDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGVAMLVLLFFI 1328 Query 1237 MTSCCSCLKGCCSCGSCCKFDEDDSEPVLK 1266 CG CC E V+K Sbjct 1329 CCCTGCGTSCFKKCGGCCDDYTGHQELVIK 1358 Score = 368 bits (945), Expect = 9e-106, Method: Composition-based stats. Identities = 109/543 (20%), Positives = 196/543 (36%), Gaps = 66/543 (12%) Query 9 PLVSSQCVNLTTRTQLPPAYTNSFTRGVYYP-DKVFRSSVLHSTQDLFLPFFSNVTWFHA 67 VS V+ + + G YY D+V+ ++ L + P ++ + + Sbjct 22 TTVSINDVDTGVPSISTDTVDVTNGLGTYYVLDRVYLNTTLLLNG--YYP--TSGSTYRN 77 Query 68 IHVSGTN--GTKRFDNPVL-PFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNAT 124 + + GT T F P L F +G+ FA + + +I+ + + + T VN + Sbjct 78 MALKGTLLLSTLWFKPPFLSDFTNGI-FAKVKNTKVIKDGVMYSEFPAITIGSTFVNTSY 136 Query 125 NVV-----------------IKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCT 167 +VV I VC++ C P + N + + + +C Sbjct 137 SVVVQPHTTILGNKLQGFLEISVCQYTMCEYP--NTICNPNLGNQRVELWHWDTGVVSCL 194 Query 168 FEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLV 227 ++ + F D+ F F G F Y T + + L Sbjct 195 YK---RNFTYDVNADYLY------FHFYQEGGTFYAYFTDTGV-----------VTKFLF 234 Query 228 DLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITD 287 ++ +G ++ + Y+ P +S T Y+V L + +LL +N++G I + Sbjct 235 NVYLGTVLSHY---------YVMPLTCNSALT---LEYWVTPLTSKQYLLAFNQDGVIFN 282 Query 288 AVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVR-FPNITNLCPFGEVFNATR 346 AVDC D +SE KC S G+Y+ + + VQP + R PN+ + C N Sbjct 283 AVDCKSDFMSEIKCKTLSIAPSTGVYELNGYTVQPIADVYRRIPNLPD-CNIEAWLNDKS 341 Query 347 FASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDE 406 S W RK SNC + S L + +F C + K+ +CF+++ D F I Sbjct 342 VPSPLNWERKTFSNCNFNMSSLMSFIQAYSFTCNNIDAAKIYGMCFSSITIDKFAIPNGR 401 Query 407 VRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSN----NLDSKVGGNYNYLYRLFRKSNLK 462 + G G + +NY++ T C + +N ++ +N + +S K Sbjct 402 KVDLQLGNLGYLQSFNYRIDTTATSCQLYYNLPAANVSVSRFNPSTWNRRFGFTEQSVFK 461 Query 463 PFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPA 522 P + T+ + C C L Y+ + Sbjct 462 PQPAGVFTDHDVVYAQHCFKASTNFCPCKLDGSLCVGNGPGIDAGYKTSGIGTCPAGTNY 521 Query 523 TVC 525 C Sbjct 522 LTC 524 >sp|P15777|SPIKE_CVBM Spike glycoprotein OS=Bovine coronavirus (strain Mebus) OX=11132 GN=S PE=3 SV=1 Length=1363 Score = 919 bits (2374), Expect = 0.0, Method: Composition-based stats. Identities = 301/870 (35%), Positives = 443/870 (51%), Gaps = 56/870 (6%) Query 422 NYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCN 481 NY + C + + SK G Y+ + L S ++ N Sbjct 520 NYLTCHNAAQCNCLCTPDPITSKSTGP----YKCPQTKYLVGIGEHCSGLAIKSDYCGGN 575 Query 482 GVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHA--PATVCGP---KKSTNLVKN 536 P G+ + + R + + +LH T C K +T+++ Sbjct 576 PC----TCQPQAFLGWSVDSCLQGD--RCNIFANFILHDVNSGTTCSTDLQKSNTDIILG 629 Query 537 KCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGV 595 CVN++ G+TG G+ E N + +Q D RD T I C G V Sbjct 630 VCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFMIRSCYSGRV 689 Query 596 SVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEH 655 S S++ A+L++++ C V + QL P N F + GC++ A++ Sbjct 690 SAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSYLGCVVNADN 739 Query 656 VNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNN--- 710 +S CD+ +G+G C Y T RR+R + T NSV S Sbjct 740 STSSVVQTCDLTVGSGYCVDYST----KRRSRRAITTGYRFTTFEPFTVNSVNDSLEPVG 795 Query 711 ---SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRAL 767 I IP+ FTI E + S K ++DC+ ++CGD C + L++YGSFC +N L Sbjct 796 GLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGSFCDNINAIL 855 Query 768 TGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN-----FSQILP----DPSKPSKRSF 817 T + D +V + + + + +KD FN FS +L D +K S RS Sbjct 856 TEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSDCNKVSSRSA 915 Query 818 IEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSAL 877 IEDLLF+KV L+D GF++ Y +C G RDLIC Q +NG+ VLPPLL+ I+ YT A Sbjct 916 IEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSVNQISGYTLAA 975 Query 878 LAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDS 937 + ++ + G +PF + + YR NGIGVT +VL +NQKLIAN FN+A+ IQ+ Sbjct 976 TSASLFPPLSAAVG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFNNALDAIQEG 1031 Query 938 LSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLI 997 +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +EA+ QIDRLI Sbjct 1032 FDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALEAQAQIDRLI 1091 Query 998 TGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAP 1057 GRL +L YV+QQL + ++ SA A K++ECV QS R++FCG G H++S Q+AP Sbjct 1092 NGRLTALNVYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNHIISLVQNAP 1151 Query 1058 HGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQRNFYEPQIIT 1116 +G+ F+H +YVP + +P +C G + P+ G FV+ W T +Y P+ IT Sbjct 1152 YGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGSGYYYPEPIT 1211 Query 1117 TDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASV 1176 +N V C V + + + P L FKEELD++FKN TS DL + IN + Sbjct 1212 GNNVVVMSTCAVNYTKAPDVMLNISTPNLHDFKEELDQWFKNQTSVAPDL-SLDYINVTF 1270 Query 1177 VNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCC 1236 +++Q E++RL E K LN+S I+L+++G YE Y+KWPWY+WL + G + M+ ++ Sbjct 1271 LDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGVAMLVLLFFI 1328 Query 1237 MTSCCSCLKGCCSCGSCCKFDEDDSEPVLK 1266 CG CC E V+K Sbjct 1329 CCCTGCGTSCFKICGGCCDDYTGHQELVIK 1358 Score = 367 bits (942), Expect = 2e-105, Method: Composition-based stats. Identities = 117/583 (20%), Positives = 209/583 (36%), Gaps = 88/583 (15%) Query 2 FVFLVLLPLVSSQCVNLTTRTQL-------PPAYTN-----SFTRGVYYP-DKVFRSSVL 48 + L+ LP+ + +L T P+ + + G YY D+V+ ++ L Sbjct 3 LILLISLPMAFAVIGDLKCTTVSINDVDTGAPSISTDIVDVTNGLGTYYVLDRVYLNTTL 62 Query 49 HSTQDLFLPFFSNVTWFHAIHVSGTN--GTKRFDNPVL-PFNDGVYFASTEKSNIIRGWI 105 + P ++ + + + + GT F P L F +G+ FA + + +I+ + Sbjct 63 LLNG--YYP--TSGSTYRNMALKGTLLLSRLWFKPPFLSDFINGI-FAKVKNTKVIKKGV 117 Query 106 FGTTLDSKTQSLLIVNNATNVV-----------------IKVCEFQFCNDPFLGVYYHKN 148 + + T VN + +VV I VC++ C P H N Sbjct 118 MYSEFPAITIGSTFVNTSYSVVVQPHTTNLDNKLQGLLEISVCQYTMCEYPHT--ICHPN 175 Query 149 NKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHT 208 + + + +C ++ + F D+ F F G F Y T Sbjct 176 LGNKRVELWHWDTGVVSCLYK---RNFTYDVNADYLY------FHFYQEGGTFYAYFTDT 226 Query 209 PINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVG 268 + + L ++ +G ++ + Y+ P SS T Y+V Sbjct 227 GV-----------VTKFLFNVYLGTVLSHY---------YVLPLTCSSAMT---LEYWVT 263 Query 269 YLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVR 328 L + +LL +N++G I +AVDC D +SE KC S G+Y+ + + VQP + R Sbjct 264 PLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELNGYTVQPIADVYR 323 Query 329 -FPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKL 387 PN+ + C N S W RK SNC + S L + +F C + K+ Sbjct 324 RIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQADSFTCNNIDAAKI 382 Query 388 NDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSN----NLDS 443 +CF+++ D F I + G G + +NY++ T C + +N ++ Sbjct 383 YGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTTATSCQLYYNLPAANVSVSR 442 Query 444 KVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQS--------- 494 +N + + KP + T + C C L Sbjct 443 FNPSTWNRRFGFTEQFVFKPQPVGVFTHHDVVYAQHCFKAPSNFCPCKLDGSLCVGNGPG 502 Query 495 -YGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKN 536 +G+G P L+ +C P T+ Sbjct 503 IDAGYKNSGIGTCPAGTNYLTCHNAAQCNCLCTPDPITSKSTG 545 >sp|P25190|SPIKE_CVBF Spike glycoprotein OS=Bovine coronavirus (strain F15) OX=11129 GN=S PE=3 SV=1 Length=1363 Score = 917 bits (2370), Expect = 0.0, Method: Composition-based stats. Identities = 299/870 (34%), Positives = 443/870 (51%), Gaps = 56/870 (6%) Query 422 NYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCN 481 NY + C + + SK G Y+ + L S ++ N Sbjct 520 NYLTCHNAAQCNCLCTPDPITSKSTGP----YKCPQTKYLVGIGEHCSGLAIKSDYCGGN 575 Query 482 GVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHA--PATVCGP---KKSTNLVKN 536 P G+ + + R + + +LH T C K +T+++ Sbjct 576 PC----TCQPQAFLGWSVDSCLQGD--RCNIFANFILHDVNSGTTCSTDLQKSNTDIILG 629 Query 537 KCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGV 595 CVN++ G+TG G+ E+N + +Q D RD T I C G V Sbjct 630 VCVNYDLYGITGQGIFVEANATYYNSWQNLLYDSNGNLYGFRDYLTNRTFMIRSCYSGRV 689 Query 596 SVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEH 655 S S++ A+L++++ C V + QL P N F + GC++ A++ Sbjct 690 SAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSYLGCVVNADN 739 Query 656 VNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNN--- 710 S CD+ +G+G C Y T RR+ + NSV S Sbjct 740 STASAVQTCDLTVGSGYCVDYST----KRRSVRAITTGYRFTNFEPFTVNSVNDSLEPVG 795 Query 711 ---SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRAL 767 I IP+ FTI E + S K ++DC+ ++CGD C + L++YGSFC +N L Sbjct 796 GLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDCAACKSQLVEYGSFCDNINAIL 855 Query 768 TGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN-----FSQILP----DPSKPSKRSF 817 T + D +V + + + + +KD FN FS +L + +K S RS Sbjct 856 TEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSECNKVSSRSA 915 Query 818 IEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSAL 877 IEDLLF+KV L+D GF++ Y +C G RDLIC Q +NG+ VLPPLL++ I+ YT A Sbjct 916 IEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSENQISGYTLAA 975 Query 878 LAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDS 937 + ++ W+ AG +PF + + YR NGIGVT +VL +NQKLIAN FN+A+ IQ+ Sbjct 976 TSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFNNALDAIQEG 1031 Query 938 LSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLI 997 +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +EA+ QIDRLI Sbjct 1032 FDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALEAQRQIDRLI 1091 Query 998 TGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAP 1057 GR +L YV+QQL + ++ SA A K++ECV QS R++FCG G H++S Q+AP Sbjct 1092 NGRFTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNHIISLVQNAP 1151 Query 1058 HGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQRNFYEPQIIT 1116 +G+ F+H +YVP + +P +C G + P+ G FV+ W T +Y P+ IT Sbjct 1152 YGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGSGYYYPEPIT 1211 Query 1117 TDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASV 1176 +N V C V + + + P L FKEELD++FKN TS DL + IN + Sbjct 1212 GNNVVVMSTCAVNYTKAPDVMLNISTPNLPDFKEELDQWFKNQTSVAPDL-SLDYINVTF 1270 Query 1177 VNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCC 1236 +++Q E++RL E K LN+S I+L+++G YE Y+KWPWY+WL + G + M+ ++ Sbjct 1271 LDLQDEMNRLQEAIKLLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGVAMLVLLFFI 1328 Query 1237 MTSCCSCLKGCCSCGSCCKFDEDDSEPVLK 1266 CG CC E V+K Sbjct 1329 CCCTGCGTSCFKKCGGCCDDYTGHQELVIK 1358 Score = 368 bits (945), Expect = 1e-105, Method: Composition-based stats. Identities = 116/564 (21%), Positives = 204/564 (36%), Gaps = 76/564 (13%) Query 9 PLVSSQCVNLTTRTQLPPAYTNSFTRGVYYP-DKVFRSSVLHSTQDLFLPFFSNVTWFHA 67 VS V+ + + G YY D+V+ ++ L + P ++ + + Sbjct 22 TTVSINDVDTGVPSISTDTVDVTNGLGTYYVLDRVYLNTTLLLNG--YYP--TSGSTYRN 77 Query 68 IHVSGTN--GTKRFDNPVL-PFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNAT 124 + + GT T F P L F +G+ FA + + +I+ + + + T VN + Sbjct 78 MALKGTLLLSTLWFKPPFLSDFINGI-FAKVKNTKVIKHGVMYSEFPAITIGSTFVNTSY 136 Query 125 NVV-----------------IKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCT 167 +VV I VC++ C P H N + + + +C Sbjct 137 SVVVQPHTTNLDNKLQGLLEISVCQYTMCEYP--NTICHPNLGNRRVELWHWDTGVVSCL 194 Query 168 FEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLV 227 ++ + F D+ F F G F Y T + + L Sbjct 195 YK---RNFTYDVNADYLY------FHFYQEGGTFYAYFTDTGV-----------VTKFLF 234 Query 228 DLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITD 287 ++ +G ++ + Y+ P +S T Y+V L + +LL +N++G I + Sbjct 235 NVYLGTVLSHY---------YVMPLTCNSAMT---LEYWVTPLTSKQYLLAFNQDGVIFN 282 Query 288 AVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVR-FPNITNLCPFGEVFNATR 346 AVDC D +SE KC S G+Y+ + + VQP + R PN+ + C N Sbjct 283 AVDCKSDFMSEIKCKTLSIAPSTGVYELNGYTVQPIADVYRRIPNLPD-CNIEAWLNDKS 341 Query 347 FASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDE 406 S W RK SNC + S L + +F C + K+ +CF+++ D F I Sbjct 342 VPSPLNWERKTFSNCNFNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGR 401 Query 407 VRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSN----NLDSKVGGNYNYLYRLFRKSNLK 462 + G G + +NY++ T C + +N +L +N + +S K Sbjct 402 KVDLQLGNLGYLQSFNYRIDTTATSCQLYYNLPAANVSLSRFNPSIWNRRFGFTEQSVFK 461 Query 463 PFERDISTEIYQAGSTPCNGVEGFNCYFPLQS----------YGFQPTNGVGYQPYRVVV 512 P + T+ + C C L +G+G P Sbjct 462 PQPVGVFTDHDVVYAQHCFKAPTNFCPCKLDGSLCVGNGPGIDAGYKNSGIGTCPAGTNY 521 Query 513 LSFELLHAPATVCGPKKSTNLVKN 536 L+ +C P T+ Sbjct 522 LTCHNAAQCNCLCTPDPITSKSTG 545 >sp|Q8BB25|SPIKE_CVP67 Spike glycoprotein OS=Porcine hemagglutinating encephalomyelitis virus (strain 67N) OX=230237 GN=S PE=3 SV=1 Length=1349 Score = 914 bits (2363), Expect = 0.0, Method: Composition-based stats. Identities = 276/779 (35%), Positives = 417/779 (54%), Gaps = 38/779 (5%) Query 509 RVVVLSFELLHA--PATVCGP---KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PF 562 R + + +L+ T C + +T + + CVN++ G+TG G+L E N + + Sbjct 583 RCNIFANFILNDVNSGTTCSTDLQQGNTIITTDVCVNYDLYGITGQGILIEVNATYYNSW 642 Query 563 QQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPV 622 Q D + RD + I C G VS + S++ A++++++ C+ V Sbjct 643 QNLLYDSSGNLYGFRDYLSNRTFLIRSCYSGRVSAVFHAN--SSEPALMFRNLKCSHVFN 700 Query 623 AIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNS 680 Q+ N F + GC++ A + S CD+ +G+G C Y T S Sbjct 701 NTILRQIQLV--------NYFDSYLGCVVNAYNNTASAVSTCDLTVGSGYCVDYVTALRS 752 Query 681 PRRARSVASQSIIAYTMSLGAENSVAYSNN--SIAIPTNFTISVTTEILPVSMTKTSVDC 738 R + + + +S+ I IP+ FTI E + K ++DC Sbjct 753 RRSFTTGYRFTNFEPFAANLVNDSIEPVGGLYEIQIPSEFTIGNLEEFIQTRSPKVTIDC 812 Query 739 TMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDF 797 ++CGD C L +YGSFC +N LT + D +V + + + + IKD Sbjct 813 ATFVCGDYAACRQQLAEYGSFCENINAILTEVNELLDTTQLQVANSLMNGVTLSTKIKDG 872 Query 798 GGFN-----FSQILP----DPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARD 848 FN FS +L + ++ S RS IEDLLF+KV L+D GF++ Y +C G RD Sbjct 873 INFNVDDINFSPVLGCLGSECNRASTRSAIEDLLFDKVKLSDVGFVQAYNNCTGGAEIRD 932 Query 849 LICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNG 908 LIC Q +NG+ VLPPLL++ I+ YT A A ++ WT AG +PF + + YR NG Sbjct 933 LICVQSYNGIKVLPPLLSENQISGYTLAATAASLFPPWTAAAG----VPFYLNVQYRING 988 Query 909 IGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSS 968 +GVT +VL +NQKLIA+ FN+A+ IQ+ +T SAL K+Q VVN NA+ALN L++QLS+ Sbjct 989 LGVTMDVLSQNQKLIASAFNNALDAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSN 1048 Query 969 NFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATK 1028 FGAIS+ L +ILSRLD +EA+ QIDRLI GRL +L YV+QQL + ++ SA A K Sbjct 1049 RFGAISASLQEILSRLDALEAKAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAIEK 1108 Query 1029 MSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGK-A 1087 ++ECV QS R++FCG G H++S Q+AP+G+ F+H +YVP + +P +C G Sbjct 1109 VNECVKSQSSRINFCGNGNHIISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDIG 1168 Query 1088 HFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS 1147 P+ G F++ W T ++Y P+ IT +N V C V + + + P L Sbjct 1169 ISPKSGYFINVNNSWMFTGSSYYYPEPITQNNVVVMSTCAVNYTKAPDLMLNTSTPNLPD 1228 Query 1148 FKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYE 1207 FKEEL ++FKN +S DL + IN + +++Q E++RL E K LN+S I+L+++G YE Sbjct 1229 FKEELYQWFKNQSSVAPDL-SLDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYE 1287 Query 1208 QYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK 1266 Y+KWPWY+WL + GL + M+ ++ CG CC E V+K Sbjct 1288 YYVKWPWYVWL--LIGLAGVAMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQEFVIK 1344 Score = 381 bits (978), Expect = 2e-110, Method: Composition-based stats. Identities = 114/493 (23%), Positives = 191/493 (39%), Gaps = 81/493 (16%) Query 8 LPLVSSQCVNLT----TRTQLPPAYTNS-FTRGVYYP--DKVFRSSVLHSTQDLFLPFFS 60 +P +SS+ V++T T L Y N+ YYP FR+ L T+ L Sbjct 33 VPSISSEVVDVTNGLGTFYVLDRVYLNTTLLLNGYYPISGATFRNMALKGTRLL------ 86 Query 61 NVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIV 120 + WF +S PFNDG+ FA + S + + + + T V Sbjct 87 STLWFKPPFLS-------------PFNDGI-FAKVKNSRFSKDGVIYSEFPAITIGSTFV 132 Query 121 NNATNVV-----------------IKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA 163 N + ++V I VC++ C P H N + + + Sbjct 133 NTSYSIVVEPHTSLINGNLQGLLQISVCQYTMCEYPHT--ICHPNLGNQRIELWHYDTDV 190 Query 164 NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSAL 223 +C + + F D+ F F G F Y T GF Sbjct 191 VSCLYR---RNFTYDVNADYLY------FHFYQEGGTFYAYFTDT----------GF-VT 230 Query 224 EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENG 283 + L L +G ++ + Y+ P +S A + Y+V L R FLL ++++G Sbjct 231 KFLFKLYLGTVLSHY---------YVMPLTCNS---ALSLEYWVTPLTTRQFLLAFDQDG 278 Query 284 TITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVR-FPNITNLCPFGEVF 342 + AVDCA D +SE C S T G+Y+ + + VQP ++ R P++ N C Sbjct 279 VLYHAVDCASDFMSEIMCKTSSITPPTGVYELNGYTVQPVATVYRRIPDLPN-CDIEAWL 337 Query 343 NATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVI 402 N+ +S W RK SNC + L + +F C + ++L +CF ++ D F I Sbjct 338 NSKTVSSPLNWERKIFSNCNFNMGRLMSFIQADSFGCNNIDASRLYGMCFGSITIDKFAI 397 Query 403 RGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWN-SNNLDSKVGGNYNYLYRLFRKSNL 461 + G++G + +NYK+ + C + ++ S N + R + +N Sbjct 398 PNSRKVDLQVGKSGYLQSFNYKIDTAVSSCQLYYSLPAANVSVTHYNPSSWNRRYGFNNQ 457 Query 462 KPFERDISTEIYQ 474 R + +Y Sbjct 458 SFGSRGLHDAVYS 470 >sp|P22432|SPIKE_CVM4 Spike glycoprotein OS=Murine coronavirus (strain 4) OX=12760 GN=S PE=3 SV=1 Length=1376 Score = 911 bits (2355), Expect = 0.0, Method: Composition-based stats. Identities = 280/793 (35%), Positives = 418/793 (53%), Gaps = 46/793 (6%) Query 509 RVVVLSFELLHA--PATVCGPK---KSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PF 562 R + + LL+ T C +T + CV ++ G+TG GV E + + Sbjct 598 RCQIFANILLNGINSGTTCSTDLQLPNTEVATGVCVRYDLYGITGQGVFKEVKADYYNSW 657 Query 563 QQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPV 622 Q D+ + RD T + I C G VS + + A+LY+++NC+ V Sbjct 658 QALLYDVNGNLNGFRDLTTNKTYTIRSCYSGRVSAAYH--KEAPEPALLYRNINCSYVFT 715 Query 623 AIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNS 680 + + P N F + GC++ A++ + CD+ +GAG+C Y + Sbjct 716 NNISREENPL--------NYFDSYLGCVVNADNRTDEALPNCDLRMGAGLCVDYSKSRRA 767 Query 681 PRRARSVASQSIIAYTMSLGAENSVAYSNN--SIAIPTNFTISVTTEILPVSMTKTSVDC 738 R + + M + +SV + IPTNFTI E + + K ++DC Sbjct 768 RRSVSTGYRLTTFEPYMPMLVNDSVQSVGGLYEMQIPTNFTIGHHEEFIQIRAPKVTIDC 827 Query 739 TMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQ-IYKTPPIKD- 796 ++CGD+ C L++YGSFC +N L + D +V + + Q + + + D Sbjct 828 AAFVCGDNAACRQQLVEYGSFCDNVNAILNEVNNLLDNMQLQVASALMQGVTISSRLPDG 887 Query 797 ----FGGFNFSQILP-----------DPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCL 841 NFS +L PS RS IEDLLF+KV L+D GF++ Y +C Sbjct 888 ISGPIDDINFSPLLGCIGSTCAEDGNGPSAIRGRSAIEDLLFDKVKLSDVGFVEAYNNCT 947 Query 842 GDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQ 901 G RDL+C Q FNG+ VLPP+L++ I+ YT+ A + WT AG +PF++ Sbjct 948 GGQEVRDLLCVQSFNGIKVLPPVLSESQISGYTAGATAAAMFPPWTAAAG----VPFSLN 1003 Query 902 MAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNT 961 + YR NG+GVT NVL ENQK+IA+ FN+A+G IQ+ +T SALGK+Q VVN NA+ALN Sbjct 1004 VQYRINGLGVTMNVLSENQKMIASAFNNALGAIQEGFDATNSALGKIQSVVNANAEALNN 1063 Query 962 LVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRAS 1021 L+ QLS+ FGAIS+ L +IL+RLD VEA+ QIDRLI GRL +L Y+++QL + I+ S Sbjct 1064 LLNQLSNRFGAISASLQEILTRLDAVEAKAQIDRLINGRLTALNAYISKQLSDSTLIKFS 1123 Query 1022 ANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAI 1081 A A K++ECV Q+ R++FCG G H++S Q+AP+G+ F+H +YVP K +P + Sbjct 1124 AAQAIEKVNECVKSQTTRINFCGNGNHILSLVQNAPYGLCFIHFSYVPTSFKTANVSPGL 1183 Query 1082 CHDG-KAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP 1140 C G + P+ G FV + W T N+Y P+ IT N+ V +C V + Sbjct 1184 CISGDRGLAPKAGYFVQDNGEWKFTGSNYYYPEPITDKNSVVMISCAVNYTKAPEVFLNN 1243 Query 1141 LQPELDSFKEELDKYFKNHTSPDVDLG-DISGINASVVNIQKEIDRLNEVAKNLNESLID 1199 P L FKEELDK+FKN TS DL D +N + +++ E++R+ + K LNES I+ Sbjct 1244 SIPNLPDFKEELDKWFKNQTSIAPDLSLDFEKLNVTFLDLTYEMNRIQDAIKKLNESYIN 1303 Query 1200 LQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCK-FDE 1258 L+E+G YE Y+KWPWY+WL + GL + + ++ CGSCC + Sbjct 1304 LKEVGTYEMYVKWPWYVWL--LIGLAGVAVCVLLFFICCCTGCGSCCFRKCGSCCDEYGG 1361 Query 1259 DDSEPVLKGVKLH 1271 V+ + H Sbjct 1362 HQDSIVIHNISAH 1374 Score = 423 bits (1088), Expect = 3e-125, Method: Composition-based stats. Identities = 128/524 (24%), Positives = 199/524 (38%), Gaps = 82/524 (16%) Query 1 MFVFLVLLP--------LVSSQCVNLTTRTQLPPAYTN-----SFTRGVYYP-DKVFRSS 46 +FVF++LLP Q VN P+ + S G YY D+V+ ++ Sbjct 2 LFVFILLLPSCLGYIGDFRCIQTVNYNGNNASAPSISTEAVDVSKGLGTYYVLDRVYLNA 61 Query 47 VLHSTQDLFLPFFSNVTWFHAIHVSGTN--GTKRFDNPVL-PFNDGVYF----------- 92 L T + P + + + + ++GTN F P L FNDG++ Sbjct 62 TLLLTG--YYPV--DGSNYRNLALTGTNTLSLTWFKPPFLSEFNDGIFAKVQNLKTNTPT 117 Query 93 -ASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKS 151 A++ I+ G +FG T S T L NN ++ VC + C P+ + N Sbjct 118 GATSYFPTIVIGSLFGNT--SYTVVLEPYNNI--IMASVCTYTICQLPYTPCKPNTNGNR 173 Query 152 -----WMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSK 206 + + + N TF V+ P+L F F G F Y Sbjct 174 VIGFWHTDVKPPICLLKRNFTFN-VNAPWLY--------------FHFYQQGGTFYAYYA 218 Query 207 HTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYY 266 P SA L + IG +T++ L + TP + + Y+ Sbjct 219 DKP-----------SATTFLFSVYIGDILTQYFVLPFI----CTP----TAGSTLLPLYW 259 Query 267 VGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI 326 V L R +L +NE G IT AVDCA +SE KC +S G+Y S + VQP + Sbjct 260 VTPLLKRQYLFNFNEKGVITSAVDCASSYISEIKCKTQSLLPSTGVYDLSGYTVQPVGVV 319 Query 327 VR-FPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPT 385 R PN+ + C E A S W R+ NC + S L + C + + Sbjct 320 YRRVPNLPD-CKIEEWLTAKSVPSPLNWERRTFQNCNFNLSSLLRYVQAESLSCNNIDAS 378 Query 386 KLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWN-SNNLDSK 444 K+ +CF +V D F I + G +G + NYK+ T C + ++ N + Sbjct 379 KVYGMCFGSVSVDKFAIPRSRQIDLQIGNSGFLQTANYKIDTAATSCQLYYSLPKNNVTI 438 Query 445 VGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNC 488 N + R + ++ F + Y + C V C Sbjct 439 NNYNPSSWNRRYGFNDAGVFGKSKHDVAY---AQQCFTVRPSYC 479 >sp|Q02385|SPIKE_CVMJC Spike glycoprotein OS=Murine coronavirus (strain JHMV / variant CL-2) OX=33735 GN=S PE=1 SV=1 Length=1376 Score = 906 bits (2342), Expect = 0.0, Method: Composition-based stats. Identities = 279/791 (35%), Positives = 418/791 (53%), Gaps = 46/791 (6%) Query 511 VVLSFELLHA--PATVCGPK---KSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQ 564 + + LL+ T C +T + CV ++ G+TG GV E + +Q Sbjct 600 QIFANILLNGINSGTTCSTDLQLPNTEVATGVCVRYDLYGITGQGVFKEVKADYYNSWQA 659 Query 565 FGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAI 624 D+ + RD T + I C G VS + + A+LY+++NC+ V Sbjct 660 LLYDVNGNLNGFRDLTTNKTYTIRSCYSGRVSAAYH--KEAPEPALLYRNINCSYVFTNN 717 Query 625 HADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPR 682 + + P N F + GC++ A++ + CD+ +GAG+C Y + R Sbjct 718 ISREENPL--------NYFDSYLGCVVNADNRPDEALPNCDLRMGAGLCVDYSKSRRARR 769 Query 683 RARSVASQSIIAYTMSLGAENSVAYSNN--SIAIPTNFTISVTTEILPVSMTKTSVDCTM 740 + + M + +SV + IPTNFTI E + + K ++DC Sbjct 770 SVSTGYRLTTFEPYMPMLVNDSVQSVGGLYEMQIPTNFTIGHHEEFIQIRAPKVTIDCAA 829 Query 741 YICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQ-IYKTPPIKD--- 796 ++CGD+ C L++YGSFC +N L + D +V + + Q + + + D Sbjct 830 FVCGDNAACRQQLVEYGSFCDNVNAILNEVNNLLDNMQLQVASALMQGVTISSRLPDGIS 889 Query 797 --FGGFNFSQILP-----------DPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGD 843 NFS +L PS RS IEDLLF+KV L+D GF++ Y +C G Sbjct 890 GPIDDINFSPLLGCIGSTCAEDGNGPSAMRGRSAIEDLLFDKVKLSDVGFVEAYNNCTGG 949 Query 844 IAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMA 903 RDL+C Q FNG+ VLPP+L++ I+ YT+ A + WT AG +PF++ + Sbjct 950 QEVRDLLCVQSFNGIKVLPPVLSESQISGYTAGATAAAMFPPWTAAAG----VPFSLNVQ 1005 Query 904 YRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLV 963 YR NG+GVT NVL ENQK+IA+ FN+A+G IQ+ +T SALGK+Q VVN NA+ALN L+ Sbjct 1006 YRINGLGVTMNVLSENQKMIASAFNNALGAIQEGFDATNSALGKIQSVVNANAEALNNLL 1065 Query 964 KQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASAN 1023 QLS+ FGAIS+ L +IL+RLD+VEA+ QIDRLI GRL +L Y+++QL + I+ SA Sbjct 1066 NQLSNRFGAISASLQEILTRLDRVEAKAQIDRLINGRLTALNAYISKQLSDSTLIKFSAA 1125 Query 1024 LAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICH 1083 A K++ECV Q+ R++FCG G H++S Q+AP+G+ F+H +YVP K +P +C Sbjct 1126 QAIEKVNECVKSQTTRINFCGNGNHILSLVQNAPYGLCFIHFSYVPTSFKTANVSPGLCI 1185 Query 1084 DG-KAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQ 1142 G + P+ G FV + W T N+Y P+ IT N+ V +C V + Sbjct 1186 SGDRGLAPKAGYFVQDNGEWKFTGSNYYYPEPITDKNSVVMISCAVNYTKAPEVFLNNSI 1245 Query 1143 PELDSFKEELDKYFKNHTSPDVDLG-DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQ 1201 P L FKEELDK+FKN TS DL D +N + +++ E++R+ + K LNES I+L+ Sbjct 1246 PNLPDFKEELDKWFKNQTSIAPDLSLDFEKLNVTFLDLTYEMNRIQDAIKKLNESYINLK 1305 Query 1202 ELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCK-FDEDD 1260 E+G YE Y+KWPWY+WL + GL + + ++ CGSCC + Sbjct 1306 EVGTYEMYVKWPWYVWL--LIGLAGVAVCVLLFFICCCTGCGSCCFRKCGSCCDEYGGHQ 1363 Query 1261 SEPVLKGVKLH 1271 V+ + H Sbjct 1364 DSIVIYNISAH 1374 Score = 424 bits (1090), Expect = 2e-125, Method: Composition-based stats. Identities = 131/559 (23%), Positives = 207/559 (37%), Gaps = 82/559 (15%) Query 1 MFVFLVLLP--------LVSSQCVNLTTRTQLPPAYTN-----SFTRGVYYP-DKVFRSS 46 +FVF++ LP Q VN P+ + S G YY D+V+ ++ Sbjct 2 LFVFILFLPSCLGYIGDFRCIQTVNYNGNNASAPSISTEAVDVSKGLGTYYVLDRVYLNA 61 Query 47 VLHSTQDLFLPFFSNVTWFHAIHVSGTN--GTKRFDNPVL-PFNDGVYF----------- 92 L T + P + + + + ++GTN F P L FNDG++ Sbjct 62 TLLLTG--YYPV--DGSNYRNLALTGTNTLSLTWFKPPFLSEFNDGIFAKVQNLKTNTPT 117 Query 93 -ASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKS 151 A++ I+ G +FG T S T L NN ++ VC + C P+ + N Sbjct 118 GATSYFPTIVIGSLFGNT--SYTVVLEPYNNI--IMASVCTYTICQLPYTPCKPNTNGNR 173 Query 152 -----WMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSK 206 + + + N TF V+ P+L F F G F Y Sbjct 174 VIGFWHTDVKPPICLLKRNFTFN-VNAPWLY--------------FHFYQQGGTFYAYYA 218 Query 207 HTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYY 266 P SA L + IG +T++ L + TP + + Y+ Sbjct 219 DKP-----------SATTFLFSVYIGDILTQYFVLPFI----CTP----TAGSTLLPLYW 259 Query 267 VGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI 326 V L R +L +NE G IT AVDCA +SE KC +S G+Y S + VQP + Sbjct 260 VTPLLKRQYLFNFNEKGVITSAVDCASSYISEIKCKTQSLLPSTGVYDLSGYTVQPVGVV 319 Query 327 VR-FPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPT 385 R PN+ + C E A S W R+ NC + S L + C + + Sbjct 320 YRRVPNLPD-CKIEEWLTAKSVPSPLNWERRTFQNCNFNLSSLLRYVQAESLSCNNIDAS 378 Query 386 KLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWN-SNNLDSK 444 K+ +CF +V D F I + G +G + NYK+ T C + ++ N + Sbjct 379 KVYGMCFGSVSVDKFAIPRSRQIDLQIGNSGFLQTANYKIDTAATSCQLYYSLPKNNVTI 438 Query 445 VGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFP--LQSYGFQPTNG 502 N + R + ++ F + ++ A C P + + Q Sbjct 439 NNYNPSSWNRRYGFNDAGVFGKS-KHDVAYAQQCFIVRPSYCPCAQPDIVSACTSQTKPM 497 Query 503 VGYQPYRVVVLSFELLHAP 521 Y P + L + P Sbjct 498 SAYCPTGTIHRECSLWNGP 516 >sp|Q8JSP8|SPIKE_CVPIA Spike glycoprotein OS=Porcine hemagglutinating encephalomyelitis virus (strain IAF-404) OX=230236 GN=S PE=3 SV=1 Length=1349 Score = 903 bits (2334), Expect = 0.0, Method: Composition-based stats. Identities = 277/779 (36%), Positives = 415/779 (53%), Gaps = 38/779 (5%) Query 509 RVVVLSFELLHA--PATVCGP---KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PF 562 R + + +L+ T C + +TN+ + CVN++ G+TG G+L E N + + Sbjct 583 RCNIFANFILNDVNSGTTCSTDLQQGNTNITTDVCVNYDLYGITGQGILIEVNATYYNSW 642 Query 563 QQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPV 622 Q D + RD + I C G VS + S++ A++++++ C+ V Sbjct 643 QNLLYDSSGNLYGFRDYLSNRTFLIRSCYSGRVSAVFHAN--SSEPALMFRNLKCSHVFN 700 Query 623 AIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNS 680 Q+ N F + GC++ A + S CD+ +G+G C Y T S Sbjct 701 YTILRQIQLV--------NYFDSYLGCVVNAYNNTASAVSTCDLTVGSGYCVDYVTALRS 752 Query 681 PRRARSVASQSIIAYTMSLGAENSVAYSNN--SIAIPTNFTISVTTEILPVSMTKTSVDC 738 R + + + +S+ I IP+ FTI E + S K ++DC Sbjct 753 RRSFTTGYRFTNFEPFAANLVNDSIEPVGGLYEIQIPSEFTIGNLEEFIQTSSPKVTIDC 812 Query 739 TMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDF 797 ++CGD C L +YGSFC +N L + D +V + + + + IKD Sbjct 813 ATFVCGDYAACRQQLAEYGSFCENINAILIEVNELLDTTQLQVANSLMNGVTLSTKIKDG 872 Query 798 GGFN-----FSQILP----DPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARD 848 FN FS +L + ++ S RS IEDLLF+KV L+D GF++ Y +C G RD Sbjct 873 INFNVDDINFSSVLGCLGSECNRASTRSAIEDLLFDKVKLSDVGFVQAYNNCTGGAEIRD 932 Query 849 LICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNG 908 LIC Q +NG+ VLPPLL++ I+ YTSA A ++ WT AG +PF + + YR NG Sbjct 933 LICVQSYNGIKVLPPLLSENQISGYTSAATAASLFPPWTAAAG----VPFYLNVQYRING 988 Query 909 IGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSS 968 +GVT +VL +NQKLIA+ FN+A+ IQ+ +T SAL K+Q VVN NA+ALN L++QLS+ Sbjct 989 LGVTMDVLSQNQKLIASAFNNALDSIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSN 1048 Query 969 NFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATK 1028 FGAIS+ L +ILSRLD +EA+ QIDRLI GRL +L YV+QQL + ++ SA A K Sbjct 1049 RFGAISASLQEILSRLDALEAKAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAIEK 1108 Query 1029 MSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGK-A 1087 ++ECV QS R++FCG G H++S Q+AP+G+ F+H +YVP + +P +C G Sbjct 1109 VNECVKSQSSRINFCGNGNHIISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDIG 1168 Query 1088 HFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS 1147 P+ G F++ W T +Y P+ IT +N V C V + + + P L Sbjct 1169 ISPKSGYFINVNNSWMFTGSGYYYPEPITQNNVVVMSTCAVNYTKAPDLMLNTSTPNLPD 1228 Query 1148 FKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYE 1207 FKEEL ++FKN +S DL IN + +++Q E++RL E K LN S I+L+++G YE Sbjct 1229 FKEELYQWFKNQSSLAPDL-SFDYINVTFLDLQDEMNRLQEAIKVLNHSYINLKDIGTYE 1287 Query 1208 QYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK 1266 Y+KWPWY+WL + L +VM+ ++ CG C E V+K Sbjct 1288 YYVKWPWYVWL--LICLAGVVMLVLLFFICCCTGCGTSCFKKCGGCFDDYTGHQEFVIK 1344 Score = 372 bits (954), Expect = 4e-107, Method: Composition-based stats. Identities = 114/493 (23%), Positives = 189/493 (38%), Gaps = 81/493 (16%) Query 8 LPLVSSQCVNLT----TRTQLPPAYTNS-FTRGVYYP--DKVFRSSVLHSTQDLFLPFFS 60 +P +SS+ V++T T L Y N+ YYP FR+ L T+ L Sbjct 33 VPSISSEVVDVTNGLGTFYVLDRVYLNTTLLLNGYYPISGATFRNVALKGTRLL------ 86 Query 61 NVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIV 120 + WF +S PFNDG+ FA + S + + + + T V Sbjct 87 STLWFKPPFLS-------------PFNDGI-FAKVKNSRFSKHGVIYSEFPAITIGSTFV 132 Query 121 NNATNVV-----------------IKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA 163 N + ++V I VC++ C P H N + + + Sbjct 133 NTSYSIVVKPHTSFINGNLQGFLQISVCQYTMCEYPQT--ICHPNLGNQRIELWHHDTDV 190 Query 164 NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSAL 223 +C + + F D+ F F G F Y T GF Sbjct 191 VSCLYR---RNFTYDVNADYLY------FHFYQEGGTFYAYFTDT----------GF-VT 230 Query 224 EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENG 283 + L L +G ++ + Y+ P S A + Y+V L R FLL ++++G Sbjct 231 KFLFKLYLGTVLSHY---------YVMPLTCDS---ALSLEYWVTPLTTRQFLLAFDQDG 278 Query 284 TITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVR-FPNITNLCPFGEVF 342 + AVDCA D +SE C S T G+Y+ + + VQP ++ R P++ N C Sbjct 279 VLYHAVDCASDFMSEIMCKTSSITPPTGVYELNGYTVQPVATVYRRIPDLPN-CDIEAWL 337 Query 343 NATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVI 402 N+ +S W RK SNC + L + +F C + ++L +CF ++ D F I Sbjct 338 NSKTVSSPLNWERKIFSNCNFNMGRLMSFIQADSFGCNNIDASRLYGMCFGSITIDKFAI 397 Query 403 RGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWN-SNNLDSKVGGNYNYLYRLFRKSNL 461 + G++G + +NYK+ + C + ++ S N + R + N Sbjct 398 PNSRKVDLQVGKSGYLQSFNYKIDTAVSSCQLYYSLPAANVSVTHYNPSSWNRRYGFINQ 457 Query 462 KPFERDISTEIYQ 474 R + +Y Sbjct 458 SFGSRGLHDAVYS 470 >sp|Q7T6T3|SPIKE_CVCBG Spike glycoprotein OS=Canine coronavirus (strain BGF10) OX=441619 GN=S PE=3 SV=1 Length=1453 Score = 797 bits (2058), Expect = 0.0, Method: Composition-based stats. Identities = 241/842 (29%), Positives = 385/842 (46%), Gaps = 103/842 (12%) Query 458 KSNLKPFERDISTEIYQAGSTPCNGVE--GFNCYFPLQSYGFQPTNGVGYQPYRVVVLSF 515 K+ PF D Y + C + G NC F + + GVG Y + Sbjct 610 KTGTCPFSFDKLNN-YLTFNKFCLSLNPTGANCKFDVVARTRTNEQGVG-SLYVIYEEGD 667 Query 516 ELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDA 575 ++ P+ G + L + C ++N G G G++ ++N L + ++ Sbjct 668 NIVGVPSDNSGLHDLSVLHLDSCTDYNIYGRNGVGIIRKTNSTLLSGLYYTS-LSGDLLG 726 Query 576 VRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV 635 ++ + +TPC + + G ++ + + T TP + Sbjct 727 FKNVSDGVVYSVTPCEVSAQAAVIDGAIVGAMTSINSELLGLTHWTT-------TPNFYY 779 Query 636 YSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARSVASQSI 692 YS + + G + + N +C+ I G+C + + Sbjct 780 YSIYNYTNERVRGTVTDS----NDVDCEPIITYSNIGVCKN--------------GALVF 821 Query 693 IAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNL 752 I T S G ++ N + IPTNFTISV E + V T S+DC+ Y+C ++ C+ L Sbjct 822 INVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNSRCNKL 879 Query 753 LLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGF------------ 800 L QY S C + +AL A ++ + + K ++ F Sbjct 880 LTQYVSACHTIEQALAMGARLENMEIDSMLFVSENALKLASVEAFNSTDNLDPIYREWPN 939 Query 801 -------NFSQILPDP-SKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDIAARDLIC 851 ILP SK RS IEDLLF+KV + G + + Y C G DL+C Sbjct 940 IGGSWLGGLKDILPSHNSKRKYRSAIEDLLFDKVVTSGLGTVDEDYKRCTGGYDIADLVC 999 Query 852 AQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGV 911 AQ +NG+ VLP + D+ +A YT++L G G A+ IPFA+ + R N + + Sbjct 1000 AQYYNGIMVLPGVANDDKMAMYTASLAGGITLG---ALGGGAVSIPFAVAVQARLNYVAL 1056 Query 912 TQNVLYENQKLIANQFNSAIGKIQDSL--------------SSTASALGKLQDVVNQNAQ 957 +VL +NQ+++AN FN AIG I + ++ A AL K+QDVVN Q Sbjct 1057 QTDVLNKNQQILANAFNQAIGNITQAFGNVNDAIHQTSKGLATVAKALAKVQDVVNTQGQ 1116 Query 958 ALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAE 1017 AL+ L QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L +V+Q L R AE Sbjct 1117 ALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQTLTRQAE 1176 Query 1018 IRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTT 1077 +RAS LA K++ECV QS+R FCG G HL S +AP+G++F H +P + T Sbjct 1177 VRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPTAYETVTA 1236 Query 1078 APAICH-DGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVI 1130 IC DG F + +F + +++T R Y+P++ T+ + CDV+ Sbjct 1237 WSGICASDGNRTFGLVVKDVQLTLFRNLDYKFYLTPRTMYQPRVATSSDFVQIEGCDVLF 1296 Query 1131 GIVNNTVYDPLQPELDS----FKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRL 1186 + P+ ++ L+ + N T P++ L NA+ +N+ EI+ L Sbjct 1297 VNATVIELPSIIPDYIDINQTVQDILENFRPNWTVPELPL---DIFNATYLNLTGEINDL 1353 Query 1187 N--------------EVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTI 1232 + N+N +L++L+ L + E Y+KWPWY+WL + GL+ I + + Sbjct 1354 EFRSEKLHNTTLELATLIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIGLVVIFCIPL 1411 Query 1233 ML 1234 +L Sbjct 1412 LL 1413 >sp|P10033|SPIKE_FIPV Spike glycoprotein OS=Feline coronavirus (strain FIPV WSU-79/1146) OX=33734 GN=S PE=1 SV=1 Length=1452 Score = 796 bits (2056), Expect = 0.0, Method: Composition-based stats. Identities = 242/848 (29%), Positives = 379/848 (45%), Gaps = 103/848 (12%) Query 458 KSNLKPFERDISTEIYQAGSTPCNGVE--GFNCYFPLQSYGFQPTNGVGYQPYRVVVLSF 515 K+ PF D Y + C + G NC F + + V Y + Sbjct 609 KTGTCPFSFDKLNN-YLTFNKFCLSLSPVGANCKFDVAARTRTNEQ-VVRSLYVIYEEGD 666 Query 516 ELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDA 575 ++ P+ G + L + C ++N G TG G++ +N L + ++ Sbjct 667 NIVGVPSDNSGLHDLSVLHLDSCTDYNIYGRTGVGIIRRTNSTLLSGLYYTS-LSGDLLG 725 Query 576 VRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV 635 ++ I +TPC + + G ++ + + T TP + Sbjct 726 FKNVSDGVIYSVTPCDVSAQAAVIDGAIVGAMTSINSELLGLTHWTT-------TPNFYY 778 Query 636 YSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARSVASQSI 692 YS + + G I + N +C+ I G+C + + Sbjct 779 YSIYNYTSERTRGTAIDS----NDVDCEPVITYSNIGVCKN--------------GALVF 820 Query 693 IAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNL 752 I T S G ++ N + IPTNFTISV E + V T S+DC Y+C + C+ L Sbjct 821 INVTHSDGDVQPISTGN--VTIPTNFTISVQVEYMQVYTTPVSIDCARYVCNGNPRCNKL 878 Query 753 LLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGF------------ 800 L QY S C + +AL A ++ + + K ++ F Sbjct 879 LTQYVSACQTIEQALAMGARLENMEVDSMLFVSENALKLASVEAFNSTENLDPIYKEWPS 938 Query 801 -------NFSQILPDP-SKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDIAARDLIC 851 ILP SK S IEDLLF+KV + G + + Y C G DL+C Sbjct 939 IGGSWLGGLKDILPSHNSKRKYGSAIEDLLFDKVVTSGLGTVDEDYKRCTGGYDIADLVC 998 Query 852 AQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGV 911 AQ +NG+ VLP + + + YT++L G G A+ IPFA+ + R N + + Sbjct 999 AQYYNGIMVLPGVANADKMTMYTASLAGGITLG---ALGGGAVAIPFAVAVQARLNYVAL 1055 Query 912 TQNVLYENQKLIANQFNSAIGKIQDSL--------------SSTASALGKLQDVVNQNAQ 957 +VL +NQ+++AN FN AIG I + ++ A AL K+QDVVN Q Sbjct 1056 QTDVLNKNQQILANAFNQAIGNITQAFGKVNDAIHQTSQGLATVAKALAKVQDVVNTQGQ 1115 Query 958 ALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAE 1017 AL+ L QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L +V+Q L R AE Sbjct 1116 ALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQTLTRQAE 1175 Query 1018 IRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTT 1077 +RAS LA K++ECV QS+R FCG G HL S +AP+G++F H +P + T Sbjct 1176 VRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPTAYETVTA 1235 Query 1078 APAICH-DGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVI 1130 IC DG F + +F + +++T R Y+P++ T+ + CDV+ Sbjct 1236 WSGICASDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQIEGCDVLF 1295 Query 1131 GIVNNTVYDPLQPELDS----FKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRL 1186 + P+ ++ L+ Y N T P+ L NA+ +N+ EID L Sbjct 1296 VNATVIDLPSIIPDYIDINQTVQDILENYRPNWTVPEFTL---DIFNATYLNLTGEIDDL 1352 Query 1187 N--------------EVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTI 1232 + N+N +L++L+ L + E Y+KWPWY+WL + GL+ + + + Sbjct 1353 EFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIGLVVVFCIPL 1410 Query 1233 MLCCMTSC 1240 +L C S Sbjct 1411 LLFCCFST 1418 >sp|Q65984|SPIKE_CVCAK Spike glycoprotein OS=Canine coronavirus (strain K378) OX=33732 GN=S PE=1 SV=1 Length=1453 Score = 795 bits (2052), Expect = 0.0, Method: Composition-based stats. Identities = 242/843 (29%), Positives = 382/843 (45%), Gaps = 103/843 (12%) Query 458 KSNLKPFERDISTEIYQAGSTPCNGVE--GFNCYFPLQSYGFQPTNGVGYQPYRVVVLSF 515 K+ PF D Y + C + G NC F + + V Y + Sbjct 610 KTGTCPFSFDKLNN-YLTFNKFCLSLNPVGANCKFDVAARTRTNEQ-VVRSLYVIYEEGD 667 Query 516 ELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDA 575 ++ P+ G + L + C ++N G+TG G++ ++N L + ++ Sbjct 668 NIVGVPSDNSGLHDLSVLHLDSCTDYNIYGITGVGIIRQTNSTLLSGLYYTS-LSGDLLG 726 Query 576 VRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV 635 ++ I +TPC + + G ++ + + T TP + Sbjct 727 FKNVSDGVIYSVTPCDVSAHAAVIDGAIVGAMTSINSELLGLTHWTT-------TPNFYY 779 Query 636 YSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARSVASQSI 692 YS + + G I + N +C+ I G+C + + Sbjct 780 YSIYNYTNERTRGTAIDS----NDVDCEPIITYSNIGVCKN--------------GALVF 821 Query 693 IAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNL 752 I T S G ++ N + IPTNFTISV E + V T S+DC+ Y+C + C+ L Sbjct 822 INVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNPRCNKL 879 Query 753 LLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGF------------ 800 L QY S C + +AL A ++ + + K ++ F Sbjct 880 LTQYVSACQTIEQALAMGARLENMEIDSMLFVSENALKLASVEAFNSTETLDPIYKEWPN 939 Query 801 -------NFSQILPDP-SKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDIAARDLIC 851 ILP SK RS IEDLLF+KV + G + + Y C G DL+C Sbjct 940 IGGSWLGGLKDILPSHNSKRKYRSAIEDLLFDKVVTSGLGTVDEDYKRCTGGYDIADLVC 999 Query 852 AQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGV 911 AQ +NG+ VLP + D+ +A YT++L G G A+ IPFA+ + R N + + Sbjct 1000 AQYYNGIMVLPGVANDDKMAMYTASLAGGITLGSL---GGGAVSIPFAIAVQARLNYVAL 1056 Query 912 TQNVLYENQKLIANQFNSAIGKIQDSL--------------SSTASALGKLQDVVNQNAQ 957 +VL +NQ+++AN FN AIG I + ++ A L K+QDVVN Q Sbjct 1057 QTDVLNKNQQILANAFNQAIGNITQAFGKVNDAIHQTSQGLATVAKVLAKVQDVVNTQGQ 1116 Query 958 ALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAE 1017 AL+ L QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L +V+Q L R AE Sbjct 1117 ALSHLTLQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQTLTRQAE 1176 Query 1018 IRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTT 1077 +RAS LA K++ECV QS+R FCG G HL S +AP+G++F H +P + T Sbjct 1177 VRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPTAYETVTA 1236 Query 1078 APAICH-DGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVI 1130 IC DG F + +F + +++T R Y+P + T+ + CDV+ Sbjct 1237 WSGICASDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPIVATSSDFVQIEGCDVLF 1296 Query 1131 GIVNNTVYDPLQPELDS----FKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRL 1186 + P+ ++ L+ + N T P++ L NA+ +N+ EI+ L Sbjct 1297 VNATVIDLPSIIPDYIDINQTVQDILENFRPNWTVPELPL---DIFNATYLNLTGEINDL 1353 Query 1187 N--------------EVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTI 1232 + N+N +L++L+ L + E Y+KWPWY+WL + GL+ I + I Sbjct 1354 EFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIGLVVIFCIPI 1411 Query 1233 MLC 1235 +L Sbjct 1412 LLF 1414 >sp|P27655|SPIKE_CVPR8 Spike glycoprotein OS=Porcine respiratory coronavirus (strain 86/137004 / isolate British) OX=33736 GN=S PE=3 SV=1 Length=1225 Score = 794 bits (2051), Expect = 0.0, Method: Composition-based stats. Identities = 244/843 (29%), Positives = 386/843 (46%), Gaps = 103/843 (12%) Query 458 KSNLKPFERDISTEIYQAGSTPCNGVE--GFNCYFPLQSYGFQPTNGVGYQPYRVVVLSF 515 K+ PF D Y + C + G NC F + + + Y + Sbjct 382 KTGTCPFSFDKLNN-YLTFNKFCLSLSPVGANCKFDVAARTR-TNDQFVRSLYVIYEEGD 439 Query 516 ELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDA 575 ++ P+ G + L + C ++N G TG G++ ++N+ L + ++ Sbjct 440 SIVGVPSDNSGLHDLSVLHLDSCTDYNIYGRTGVGIIRQTNRTLLSGLYYTS-LSGDLLG 498 Query 576 VRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV 635 ++ I +TPC + I G ++ + + T +TP + Sbjct 499 FKNVSDGVIYSVTPCDVSAQAAIIDGAIVGAITSINSELLALTHWT-------ITPNFYY 551 Query 636 YSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARSVASQSI 692 YS + G IG+ N +C+ I G+C + + Sbjct 552 YSIYNYTNDKTRGTPIGS----NDVDCEPVITYSNIGVCKN--------------GALVF 593 Query 693 IAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNL 752 I T S G ++ N + IPTNFTISV E + V T S+DC+ Y+C + C+ L Sbjct 594 INVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNPRCNKL 651 Query 753 LLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPI----------------KD 796 L QY S C + +AL A ++ + + K + + Sbjct 652 LTQYVSACQTIEQALAMGARLENMEVDSMLFVSENALKLASVEAFNSSETLDPIYKEWPN 711 Query 797 FGGF---NFSQILP-DPSKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDIAARDLIC 851 GGF ILP D SK RS IEDLLF+KV + G + + Y C G DL+C Sbjct 712 IGGFWLEGLKYILPSDNSKRKYRSAIEDLLFSKVVTSGLGTVDEDYKRCTGGYDIADLVC 771 Query 852 AQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGV 911 AQ +NG+ VLP + + + YT++L G G A+ IPFA+ + R N + + Sbjct 772 AQYYNGIMVLPGVANADKMTMYTASLAGGITLG---ALGGGAVAIPFAVAVQARLNYVAL 828 Query 912 TQNVLYENQKLIANQFNSAIGKIQD--------------SLSSTASALGKLQDVVNQNAQ 957 +VL +NQ+++A+ FN AIG I L++ A AL K+QDVVN Q Sbjct 829 QTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHQTSRGLTTVAKALAKVQDVVNTQGQ 888 Query 958 ALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAE 1017 AL L QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L +V+Q L R AE Sbjct 889 ALRHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQTLTRQAE 948 Query 1018 IRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTT 1077 +RAS LA K++ECV QS R FCG G HL S +AP+G++F H +P + T Sbjct 949 VRASRQLAKDKVNECVKSQSHRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPTAYETVTA 1008 Query 1078 APAICH-DGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVI 1130 IC DG F + +F + ++++T R Y+P++ T+ + CDV+ Sbjct 1009 WSGICALDGDRTFGLVVKDVQLTLFRNLDDNFYLTPRTMYQPRVATSSDFVQIEGCDVLF 1068 Query 1131 GIVNNTVYDPLQPELDS----FKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRL 1186 + + P+ ++ L+ + N T P++ + NA+ +N+ EID L Sbjct 1069 VNTTVSDLPSIIPDYIDINQTVQDILENFRPNWTVPELTM---DVFNATYLNLTGEIDDL 1125 Query 1187 N--------------EVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTI 1232 + N+N +L++L+ L + E Y+KWPWY+WL + GL+ I + + Sbjct 1126 EFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIGLVVIFCIPL 1183 Query 1233 MLC 1235 +L Sbjct 1184 LLF 1186 >sp|P07946|SPIKE_CVPPU Spike glycoprotein OS=Porcine transmissible gastroenteritis coronavirus (strain Purdue) OX=11151 GN=S PE=1 SV=2 Length=1447 Score = 794 bits (2050), Expect = 0.0, Method: Composition-based stats. Identities = 242/843 (29%), Positives = 383/843 (45%), Gaps = 103/843 (12%) Query 458 KSNLKPFERDISTEIYQAGSTPCNGVE--GFNCYFPLQSYGFQPTNGVGYQPYRVVVLSF 515 K+ PF D Y + C + G NC F + + V Y + Sbjct 604 KTGTCPFSFDKLNN-YLTFNKFCLSLSPVGANCKFDVAARTRTNEQ-VVRSLYVIYEEGD 661 Query 516 ELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDA 575 ++ P+ G + L + C ++N G TG G++ ++N+ L + ++ Sbjct 662 NIVGVPSDNSGVHDLSVLHLDSCTDYNIYGRTGVGIIRQTNRTLLSGLYYTS-LSGDLLG 720 Query 576 VRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV 635 ++ I +TPC + + GT ++ + + T TP + Sbjct 721 FKNVSDGVIYSVTPCDVSAQAAVIDGTIVGAITSINSELLGLTHWTT-------TPNFYY 773 Query 636 YSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARSVASQSI 692 YS + G I + N +C+ I G+C + + Sbjct 774 YSIYNYTNDRTRGTAIDS----NDVDCEPVITYSNIGVCKN--------------GAFVF 815 Query 693 IAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNL 752 I T S G ++ N + IPTNFTISV E + V T S+DC+ Y+C + C+ L Sbjct 816 INVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNPRCNKL 873 Query 753 LLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGF------------ 800 L QY S C + +AL A ++ + + K ++ F Sbjct 874 LTQYVSACQTIEQALAMGARLENMEVDSMLFVSENALKLASVEAFNSSETLDPIYKEWPN 933 Query 801 -------NFSQILPDP-SKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDIAARDLIC 851 ILP SK RS IEDLLF+KV + G + + Y C G DL+C Sbjct 934 IGGSWLEGLKYILPSHNSKRKYRSAIEDLLFDKVVTSGLGTVDEDYKRCTGGYDIADLVC 993 Query 852 AQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGV 911 AQ +NG+ VLP + + + YT++L G G A+ IPFA+ + R N + + Sbjct 994 AQYYNGIMVLPGVANADKMTMYTASLAGGITLG---ALGGGAVAIPFAVAVQARLNYVAL 1050 Query 912 TQNVLYENQKLIANQFNSAIGKIQD--------------SLSSTASALGKLQDVVNQNAQ 957 +VL +NQ+++A+ FN AIG I L++ A AL K+QDVVN Q Sbjct 1051 QTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHQTSRGLATVAKALAKVQDVVNIQGQ 1110 Query 958 ALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAE 1017 AL+ L QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L +V+Q L R AE Sbjct 1111 ALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQTLTRQAE 1170 Query 1018 IRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTT 1077 +RAS LA K++ECV QS+R FCG G HL S +AP+G++F H +P + T Sbjct 1171 VRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPTAYETVTA 1230 Query 1078 APAICH-DGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVI 1130 P IC DG F + +F + +++T R Y+P++ T+ + CDV+ Sbjct 1231 WPGICASDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQIEGCDVLF 1290 Query 1131 GIVNNTVYDPLQPELDS----FKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRL 1186 + + P+ ++ L+ + N T P++ NA+ +N+ EID L Sbjct 1291 VNATVSDLPSIIPDYIDINQTVQDILENFRPNWTVPELTF---DIFNATYLNLTGEIDDL 1347 Query 1187 N--------------EVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTI 1232 + N+N +L++L+ L + E Y+KWPWY+WL + GL+ I + + Sbjct 1348 EFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIGLVVIFCIPL 1405 Query 1233 MLC 1235 +L Sbjct 1406 LLF 1408 >sp|Q01977|SPIKE_CVPRT Spike glycoprotein OS=Porcine transmissible gastroenteritis coronavirus (strain NEB72-rt) OX=33738 GN=S PE=3 SV=1 Length=1447 Score = 791 bits (2042), Expect = 0.0, Method: Composition-based stats. Identities = 241/843 (29%), Positives = 382/843 (45%), Gaps = 103/843 (12%) Query 458 KSNLKPFERDISTEIYQAGSTPCNGVE--GFNCYFPLQSYGFQPTNGVGYQPYRVVVLSF 515 K+ PF D Y + C + G NC F + + V Y + Sbjct 604 KTGTCPFSFDKLNN-YLTFNKFCLSLSPVGANCKFDVAARTRTNEQ-VVRSLYVIYEEGD 661 Query 516 ELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDA 575 ++ P+ G + L + C ++N G TG G++ ++N+ L + ++ Sbjct 662 NIVGVPSDNSGVHDLSVLHLDSCTDYNIYGRTGVGIIRKTNRTLLSGLYYTS-LSGDLLG 720 Query 576 VRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV 635 ++ I +TPC + + GT ++ + + T TP + Sbjct 721 FKNVSDGVIYSVTPCDVSAQAAVIDGTIVGAITSINSELLGLTHWTT-------TPNFYY 773 Query 636 YSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARSVASQSI 692 YS + G I + N +C+ I G+C + + Sbjct 774 YSIYNYTNDRTRGTAIDS----NDVDCEPVITYSNIGVCKN--------------GAFVF 815 Query 693 IAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNL 752 I T S G ++ N + IPTNFTISV E + V T S+DC+ Y+C + C+ L Sbjct 816 INVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNPRCNKL 873 Query 753 LLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGF------------ 800 L QY S C + +AL A ++ + + K ++ F Sbjct 874 LTQYVSACQTIEQALAMGARLENMEVDSMLFVSENALKLASVEAFNSSETLDPIYKEWPN 933 Query 801 -------NFSQILPDP-SKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDIAARDLIC 851 ILP SK RS IEDLLF+KV + G + + Y C G DL+C Sbjct 934 IGGSWLEGLKYILPSHNSKRKYRSAIEDLLFDKVVTSGLGTVDEDYKRCTGGYDIADLVC 993 Query 852 AQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGV 911 AQ +NG+ VLP + + + YT++L G G A+ IPFA+ + R N + + Sbjct 994 AQYYNGIMVLPGVANADKMTMYTASLAGGITLG---ALGGGAVAIPFAVAVQARLNYVAL 1050 Query 912 TQNVLYENQKLIANQFNSAIGKIQD--------------SLSSTASALGKLQDVVNQNAQ 957 +VL +NQ+++A+ FN AIG I L++ A AL K+QDVV Q Sbjct 1051 QTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHXTSRGLATVAKALAKVQDVVXIQGQ 1110 Query 958 ALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAE 1017 AL+ L QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L +V+Q L R AE Sbjct 1111 ALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQTLTRQAE 1170 Query 1018 IRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTT 1077 +RAS LA K++ECV QS+R FCG G HL S +AP+G++F H +P + T Sbjct 1171 VRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPTAYETVTA 1230 Query 1078 APAICH-DGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVI 1130 P IC DG F + +F + +++T R Y+P++ T+ + CDV+ Sbjct 1231 WPGICASDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQIEGCDVLF 1290 Query 1131 GIVNNTVYDPLQPELDS----FKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRL 1186 + + P+ ++ L+ + N T P++ NA+ +N+ EID L Sbjct 1291 VNATVSDLPSIIPDYIDINQTVQDILENFRPNWTVPELTF---DIFNATYLNLTGEIDDL 1347 Query 1187 N--------------EVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTI 1232 + N+N +L++L+ L + E Y+KWPWY+WL + GL+ I + + Sbjct 1348 EFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIGLVVIFCIPL 1405 Query 1233 MLC 1235 +L Sbjct 1406 LLF 1408 >sp|P24413|SPIKE_CVPRM Spike glycoprotein OS=Porcine respiratory coronavirus (strain RM4) OX=11148 GN=S PE=1 SV=1 Length=1225 Score = 790 bits (2039), Expect = 0.0, Method: Composition-based stats. Identities = 245/843 (29%), Positives = 385/843 (46%), Gaps = 103/843 (12%) Query 458 KSNLKPFERDISTEIYQAGSTPCNGVE--GFNCYFPLQSYGFQPTNGVGYQPYRVVVLSF 515 K+ PF D Y + C + G NC F + + + V Y + Sbjct 382 KTGTCPFSFDKLNN-YLTFNKFCLSLSPVGANCKFDVAARTR-TNDQVVRSLYVIYEEGD 439 Query 516 ELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDA 575 ++ P+ G + L + C ++N G TG G++ ++N+ L + ++ Sbjct 440 SIVGVPSDNSGLHDLSVLHLDSCTDYNIYGRTGVGIIRQTNRTILSGLYYTS-LSGDLLG 498 Query 576 VRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV 635 + I +TPC + I GT ++ + + T TP + Sbjct 499 FTNVSDGVIYSVTPCDVSAQAAIIDGTIVGAITSINSELLGLTHWTT-------TPNFYY 551 Query 636 YSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARSVASQSI 692 YS + G IG+ N +C+ I G+C + + Sbjct 552 YSIYNYTNDKTRGTPIGS----NDVDCEPVITYSNIGVCKN--------------GALVF 593 Query 693 IAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNL 752 I T S G ++ N + IPTNFTISV E + V T S+DC+ Y+C + C+ L Sbjct 594 INVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNPRCNKL 651 Query 753 LLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPI----------------KD 796 L QY S C + +AL A ++ + + K + + Sbjct 652 LTQYVSACQTIEQALAMGARLENMEVDSMLFVSENALKLASVEAFNSSETLDPIYKEWPN 711 Query 797 FGGF---NFSQILP-DPSKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDIAARDLIC 851 GGF ILP D SK RS IEDLLF+KV + G + + Y C G DL+C Sbjct 712 IGGFWLEGLKYILPSDNSKRKYRSAIEDLLFSKVVTSGLGTVDEDYKRCTGGYDIADLVC 771 Query 852 AQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGV 911 AQ +NG+ VLP + + + YT++L G G A+ IPFA+ + R N + + Sbjct 772 AQYYNGIMVLPGVANADKMTMYTASLAGGITLG---ALGGGAVAIPFAVAVQARLNYVAL 828 Query 912 TQNVLYENQKLIANQFNSAIGKIQD--------------SLSSTASALGKLQDVVNQNAQ 957 +VL +NQ+++A+ FN AIG I L++ A AL K+QDVVN Q Sbjct 829 QTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHQTSRGLTTVAKALAKVQDVVNTQGQ 888 Query 958 ALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAE 1017 AL L QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L +V+Q L R AE Sbjct 889 ALRHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQTLTRQAE 948 Query 1018 IRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTT 1077 +RAS LA K++ECV QS+R FCG G HL S +AP+G++F H +P + T Sbjct 949 VRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPTAYETVTA 1008 Query 1078 APAICH-DGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVI 1130 IC D F + +F + +++T R Y+P++ T+ + CDV+ Sbjct 1009 WSGICALDVDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQIEGCDVLF 1068 Query 1131 GIVNNTVYDPLQPELDS----FKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRL 1186 + + P+ ++ L+ + N T P++ L NA+ +N+ EID L Sbjct 1069 VNTTVSDLPSIIPDYIDINQTVQDILENFRPNWTVPELTL---DVFNATYLNLTGEIDDL 1125 Query 1187 N--------------EVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTI 1232 + N+N ++++L+ L + E Y+KWPWY+WL + GL+ I + + Sbjct 1126 EFRSEKLHNTTVELAILIDNINNTVVNLEWLNRIETYVKWPWYVWL--LIGLVVIFCIPL 1183 Query 1233 MLC 1235 +L Sbjct 1184 LLF 1186 >sp|P33470|SPIKE_CVPMI Spike glycoprotein OS=Porcine transmissible gastroenteritis coronavirus (strain Miller) OX=33737 GN=S PE=3 SV=2 Length=1449 Score = 789 bits (2038), Expect = 0.0, Method: Composition-based stats. Identities = 242/843 (29%), Positives = 383/843 (45%), Gaps = 103/843 (12%) Query 458 KSNLKPFERDISTEIYQAGSTPCNGVE--GFNCYFPLQSYGFQPTNGVGYQPYRVVVLSF 515 K+ PF D Y + C + G NC F + + + V Y + Sbjct 606 KTGTCPFSFDKLNN-YLTFNKFCLSLSPVGANCKFDVAARTR-TNDQVVRSLYVIYEEGD 663 Query 516 ELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDA 575 ++ P+ G + L + C ++N G TG G++ ++N+ L + ++ Sbjct 664 NIVGVPSDNSGLHDLSVLHLDSCTDYNIYGRTGVGIIRQTNRTLLSGLYYTS-LSGDLLG 722 Query 576 VRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV 635 ++ I +TPC + + GT ++ + + T TP + Sbjct 723 FKNVSDGVIYSVTPCDVSAQAAVIDGTIVGAITSINSELLGLTHWTT-------TPNFYY 775 Query 636 YSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARSVASQSI 692 YS + G I + N +C+ I G+C + + Sbjct 776 YSIYNYTNDRTRGTAIDS----NDVDCEPVITYSNIGVCKN--------------GALVF 817 Query 693 IAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNL 752 I T S G ++ N + IPTNFTISV E + V T S+DC+ Y+C + C+ L Sbjct 818 INVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNPRCNKL 875 Query 753 LLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGF------------ 800 L QY S C + +AL A ++ + + K ++ F Sbjct 876 LTQYVSACQTIEQALAMGARLENMEVGSMLFVSENALKLASVEAFNSSETLDPIYKEWPN 935 Query 801 -------NFSQILP-DPSKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDIAARDLIC 851 ILP D SK RS IEDLLF KV + G + + Y C G DL+C Sbjct 936 IGGSWLEGLKYILPSDNSKRKYRSAIEDLLFAKVVTSGLGTVDEDYKRCTGGYDIADLVC 995 Query 852 AQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGV 911 AQ +NG+ VLP + + + YT++L G G A+ IPFA+ + R N + + Sbjct 996 AQYYNGIMVLPGVANADKMTMYTASLAGGITLG---ALGGGAVAIPFAVAVQARLNYVAL 1052 Query 912 TQNVLYENQKLIANQFNSAIGKIQD--------------SLSSTASALGKLQDVVNQNAQ 957 +VL +NQ+++A+ FN AIG I L++ A AL K+QDVVN Q Sbjct 1053 QTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHQTSRGLATVAKALAKVQDVVNTQGQ 1112 Query 958 ALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAE 1017 AL+ L QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L +V+Q L R AE Sbjct 1113 ALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQTLTRQAE 1172 Query 1018 IRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTT 1077 +RAS LA K++ECV QS+R FCG G HL S +AP+G++F H +P + T Sbjct 1173 VRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPTAYETVTA 1232 Query 1078 APAICH-DGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVI 1130 IC DG F + +F + +++T R Y+P++ T+ + CDV+ Sbjct 1233 WAGICALDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQIEGCDVLF 1292 Query 1131 GIVNNTVYDPLQPELDS----FKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRL 1186 + + P+ ++ L+ + N T P++ NA+ +N+ EID L Sbjct 1293 VNATVSDLPSIIPDYIDINQTVQDILENFRPNWTVPELTF---DIFNATYLNLTGEIDDL 1349 Query 1187 N--------------EVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTI 1232 + N+N +L++L+ L + E Y+KWPWY+WL + GL+ I + + Sbjct 1350 EFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIGLVVIFCIPL 1407 Query 1233 MLC 1235 +L Sbjct 1408 LLF 1410 >sp|P18450|SPIKE_CVPFS Spike glycoprotein OS=Porcine transmissible gastroenteritis coronavirus (strain FS772/70) OX=11150 GN=S PE=3 SV=2 Length=1449 Score = 783 bits (2023), Expect = 0.0, Method: Composition-based stats. Identities = 240/843 (28%), Positives = 383/843 (45%), Gaps = 103/843 (12%) Query 458 KSNLKPFERDISTEIYQAGSTPCNGVE--GFNCYFPLQSYGFQPTNGVGYQPYRVVVLSF 515 K+ PF D Y + C + G NC F + + + V Y + Sbjct 606 KTGTCPFSFDKLNN-YLTFNKFCLSLSPVGANCKFDVAARTR-ANDQVVRSLYVIYEEGD 663 Query 516 ELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDA 575 ++ P+ G + L + C ++N G +G G++ ++N+ L + ++ Sbjct 664 NIVGVPSDNSGLHDLSVLHLDSCTDYNIYGRSGVGIIRQTNRTLLSGLYYTS-LSGDLLG 722 Query 576 VRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV 635 ++ I +TPC + + GT ++ + + T TP + Sbjct 723 FKNVSDGVIYSVTPCDVSAQAAVIDGTIVGAITSINSELLGLTHWTT-------TPNFYY 775 Query 636 YSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARSVASQSI 692 YS + G I + N +C+ I G+C + + Sbjct 776 YSIYNYTNDMTRGTAIDS----NDVDCEPVITYSNIGVCKN--------------GALVF 817 Query 693 IAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNL 752 I T S G ++ N + IPTNFTISV E + V T S+DC+ Y+C + C+ L Sbjct 818 INVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNPRCNKL 875 Query 753 LLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGF------------ 800 L QY S C + +AL A ++ + + K ++ F Sbjct 876 LTQYVSACQTIEQALAVGARLENMEVDSMLFVSENALKLASVEAFNSSETLDPIYKEWPN 935 Query 801 -------NFSQILP-DPSKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDIAARDLIC 851 ILP D SK RS IEDLLF+KV + G + + Y C G DL+C Sbjct 936 IGGSWLEGLKYILPSDNSKRKYRSAIEDLLFSKVVTSGLGTVDEDYKRCTGGYDIADLVC 995 Query 852 AQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGV 911 AQ +NG+ VLP + + + YT++L G G A+ IPFA+ + R N + + Sbjct 996 AQYYNGIMVLPGVANADKMTMYTASLAGGITLG---ALGGGAVAIPFAVAVQARLNYVAL 1052 Query 912 TQNVLYENQKLIANQFNSAIGKIQD--------------SLSSTASALGKLQDVVNQNAQ 957 +VL +NQ+++A+ FN AIG I L++ A AL K+QDVVN Q Sbjct 1053 QTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHQTSRGLATVAKALAKVQDVVNTQGQ 1112 Query 958 ALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAE 1017 AL+ L QL +NF AISS ++DI +RLD++ A+ +DRLITGRL +L +V+Q L R AE Sbjct 1113 ALSHLTVQLQNNFQAISSSISDIYNRLDELSADAHVDRLITGRLTALNAFVSQTLTRQAE 1172 Query 1018 IRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTT 1077 +RAS LA K++ECV QS+R FCG G HL S +AP+G++F H +P + T Sbjct 1173 VRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHAVLLPTAYETVTA 1232 Query 1078 APAICH-DGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVI 1130 IC DG F + +F + +++T R Y+P++ T+ + CDV+ Sbjct 1233 WAGICALDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQIEGCDVLF 1292 Query 1131 GIVNNTVYDPLQPELDS----FKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRL 1186 + + P+ ++ L+ + N T P++ NA+ +N+ EID L Sbjct 1293 VNATLSDLPSIIPDYIDINQTVQDILENFRPNWTVPELTF---DIFNATYLNLTGEIDDL 1349 Query 1187 N--------------EVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTI 1232 + N+N +L++L+ L + E Y+KWPWY+WL + GL+ I + + Sbjct 1350 EFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIGLVVIFCIPL 1407 Query 1233 MLC 1235 +L Sbjct 1408 LLF 1410 >sp|P36300|SPIKE_CVCAI Spike glycoprotein OS=Canine coronavirus (strain Insavc-1) OX=36391 GN=S PE=1 SV=1 Length=1451 Score = 780 bits (2014), Expect = 0.0, Method: Composition-based stats. Identities = 237/843 (28%), Positives = 378/843 (45%), Gaps = 104/843 (12%) Query 458 KSNLKPFERDISTEIYQAGSTPCNGVE--GFNCYFPLQSYGFQPTNGVGYQPYRVVVLSF 515 K+ PF D Y + C + G NC + + V Y + Sbjct 609 KTGTCPFSFDKLNN-YLTFNKFCLSLNPVGANCKLDVAARTRTNEQ-VFGSLYVIYEEGD 666 Query 516 ELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDA 575 ++ P+ G + L + C ++N G TG G++ ++N L + ++ Sbjct 667 NIVGVPSDNSGLHDLSVLHLDSCTDYNIYGRTGVGIIRKTNSTLLSGLYYTS-LSGDLLG 725 Query 576 VRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV 635 ++ + +TPC + + G ++ + + T TP + Sbjct 726 FKNVSDGVVYSVTPCDVSAQAAVIDGAIVGAMTSINSELLGLTHWTT-------TPNFYY 778 Query 636 YSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARSVASQSI 692 YS + G I N +C+ I G+C + + Sbjct 779 YSIYNYTNVMNRGTAID-----NDIDCEPIITYSNIGVCKN--------------GALVF 819 Query 693 IAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNL 752 I T S G ++ N + IPTNFTISV E + V T S+DC Y+C + C+ L Sbjct 820 INVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCARYVCNGNPRCNKL 877 Query 753 LLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGF------------ 800 L QY S C + +AL A ++ + + K ++ F Sbjct 878 LTQYVSACQTIEQALAMGARLENMEIDSMLFVSENALKLASVEAFNSTENLDPIYKEWPN 937 Query 801 -------NFSQILPDP-SKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDIAARDLIC 851 ILP SK RS IEDLLF+KV + G + + Y G DL+C Sbjct 938 IGGSWLGGLKDILPSHNSKRKYRSAIEDLLFDKVVTSGLGTVDEDYKRSAGGYDIADLVC 997 Query 852 AQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGV 911 A+ +NG+ VLP + D+ + YT++L G + G A+ IPFA+ + R N + + Sbjct 998 ARYYNGIMVLPGVANDDKMTMYTASLTGGITLGALS---GGAVAIPFAVAVQARLNYVAL 1054 Query 912 TQNVLYENQKLIANQFNSAIGKIQDSL--------------SSTASALGKLQDVVNQNAQ 957 +VL +NQ+++AN FN AIG I + ++ A AL K+QDVVN Q Sbjct 1055 QTDVLNKNQQILANAFNQAIGNITQAFGKVNDAIHQTSKGLATVAKALAKVQDVVNTQGQ 1114 Query 958 ALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAE 1017 AL+ L QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L +V+Q L R AE Sbjct 1115 ALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQTLTRQAE 1174 Query 1018 IRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTT 1077 +RAS LA K++ECV QS+R FCG G HL S +AP+G++F H +P + T Sbjct 1175 VRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPTAYETVTA 1234 Query 1078 APAICH-DGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVI 1130 IC DG F + +F + +++T R Y+P++ T+ + CDV+ Sbjct 1235 WSGICASDGSRTFGLVVEDVQLTLFRNLDEKFYLTPRTMYQPRVATSSDFVQIEGCDVLF 1294 Query 1131 GIVNNTVYDPLQPELDS----FKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRL 1186 + P+ ++ L+ + N T P++ L +A+ +N+ EI+ L Sbjct 1295 VNGTVIELPSIIPDYIDINQTVQDILENFRPNWTVPELPL---DIFHATYLNLTGEINDL 1351 Query 1187 N--------------EVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTI 1232 + N+N +L++L+ L + E Y+KWPWY+WL + GL+ I + I Sbjct 1352 EFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIGLVVIFCIPI 1409 Query 1233 MLC 1235 +L Sbjct 1410 LLF 1412 >sp|P15423|SPIKE_CVH22 Spike glycoprotein OS=Human coronavirus 229E OX=11137 GN=S PE=1 SV=1 Length=1173 Score = 769 bits (1986), Expect = 0.0, Method: Composition-based stats. Identities = 251/900 (28%), Positives = 386/900 (43%), Gaps = 101/900 (11%) Query 413 GQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEI 472 G +A++N CV + V N N ++ + Sbjct 324 GVNITLANFN---ETKGPLCVDTSHFTTKYVAVYANVGRWSASINTGNCPFSFGKVNNFV 380 Query 473 YQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTN 532 C P+ + Y + P V G N Sbjct 381 KFGSVCFSLKDIPGGCAMPIVANWAYSKYYTIGSLYVSWSDGDGITGVPQPVEGVSSFMN 440 Query 533 LVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSF 592 + +KC +N ++G GV+ SN FL + +D I ITPC Sbjct 441 VTLDKCTKYNIYDVSGVGVIRVSNDTFLNGITYTSTS-GNLLGFKDVTKGTIYSITPC-- 497 Query 593 GGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG 652 N +Q+ V Q A+ L+ + Y F Sbjct 498 ----------NPPDQLVVYQQ---------AVVGAMLSENFTSYG-----FSNVVELPKF 533 Query 653 AEHVNNSYECDIPI----GAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYS 708 N +Y C + G+CA PR + +I+ +S Sbjct 534 FYASNGTYNCTDAVLTYSSFGVCADGSIIAVQPRNVSYDSVSAIVTANLS---------- 583 Query 709 NNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALT 768 IP+N+T SV E L ++ T VDC+ Y+C + C LL QY S C + AL Sbjct 584 -----IPSNWTTSVQVEYLQITSTPIVVDCSTYVCNGNVRCVELLKQYTSACKTIEDALR 638 Query 769 GIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPD----PSKPSKRSFIEDLLFN 824 A + + E+ K+ + + FG +N S ++P S+ + RS IED+LF+ Sbjct 639 NSARLESADVSEMLTFDKKAFTLANVSSFGDYNLSSVIPSLPTSGSRVAGRSAIEDILFS 698 Query 825 KVTLADAGFIKQ-YGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTIT 883 K+ + G + Y C ++ DL CAQ +NG+ VLP + E +A YT +L+ G Sbjct 699 KLVTSGLGTVDADYKKCTKGLSIADLACAQYYNGIMVLPGVADAERMAMYTGSLIGGIAL 758 Query 884 SGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLS---- 939 G T +A+ IPF++ + R N + + +VL ENQK++A FN A+ I D+ + Sbjct 759 GGLT----SAVSIPFSLAIQARLNYVALQTDVLQENQKILAASFNKAMTNIVDAFTGVND 814 Query 940 ----------STASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA 989 + A+AL K+QDVVNQ +LN L QL NF AISS + I RLD ++A Sbjct 815 AITQTSQALQTVATALNKIQDVVNQQGNSLNHLTSQLRQNFQAISSSIQAIYDRLDTIQA 874 Query 990 EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHL 1049 + Q+DRLITGRL +L +V+ L + E+RAS LA K++ECV QSKR FCG G H+ Sbjct 875 DQQVDRLITGRLAALNVFVSHTLTKYTEVRASRQLAQQKVNECVKSQSKRYGFCGNGTHI 934 Query 1050 MSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHF----PREGVFVSNGTHWFVT 1105 S +AP G+VFLH +P Q K+ +C DG + P ++ G ++ +T Sbjct 935 FSIVNAAPEGLVFLHTVLLPTQYKDVEAWSGLCVDGTNGYVLRQPNLALY-KEGNYYRIT 993 Query 1106 QRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFK---EELDKYFKNHTSP 1162 R +EP+I T + NC+V ++ + + PE +EL N+T P Sbjct 994 SRIMFEPRIPTMADFVQIENCNVTFVNISRSELQTIVPEYIDVNKTLQELSYKLPNYTVP 1053 Query 1163 DVDLGDISGINASVVNIQKEID--------------RLNEVAKNLNESLIDLQELGKYEQ 1208 D+ + N +++N+ EI +L + N+N +L+DL+ L + E Sbjct 1054 DL---VVEQYNQTILNLTSEISTLENKSAELNYTVQKLQTLIDNINSTLVDLKWLNRVET 1110 Query 1209 YIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSC-GSCCKFDE---DDSEPV 1264 YIKWPW++WL LI +V + ++ CC T CC S CC+ + D E + Sbjct 1111 YIKWPWWVWLCISVVLIFVVSMLLLCCCSTGCCGFFSCFASSIRGCCESTKLPYYDVEKI 1170 >sp|Q6Q1S2|SPIKE_CVHNL Spike glycoprotein OS=Human coronavirus NL63 OX=277944 GN=S PE=1 SV=1 Length=1356 Score = 754 bits (1947), Expect = 0.0, Method: Composition-based stats. Identities = 236/811 (29%), Positives = 359/811 (44%), Gaps = 87/811 (11%) Query 486 FNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNG 545 +C FPL++ + + Y + P V G ++ +NLV N C +N Sbjct 575 GSCNFPLEATWHYTSYTIVGALYVTWSEGNSITGVPYPVSGIREFSNLVLNNCTKYNIYD 634 Query 546 LTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTS 605 GTG++ SN+ + + ++ T I +TPC+ + + Sbjct 635 YVGTGIIRSSNQSLAGGITYVSNS-GNLLGFKNVSTGNIFIVTPCNQPDQVAVYQQSIIG 693 Query 606 NQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIP 665 AV E + P + S G N C +N Sbjct 694 AMTAV-------NESRYGLQNLLQLPNFYYVSNGGN------NCTTAVMTYSN------- 733 Query 666 IGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTE 725 GICA PR + +II +S IP+N+T SV E Sbjct 734 --FGICADGSLIPVRPRNSSDNGISAIITANLS---------------IPSNWTTSVQVE 776 Query 726 ILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQV 785 L ++ T VDC Y+C + C NLL QY S C + AL A + + + Sbjct 777 YLQITSTPIVVDCATYVCNGNPRCKNLLKQYTSACKTIEDALRLSAHLETNDVSSMLTFD 836 Query 786 KQIYKTPPIKDFGGFNFSQILPD----PSKPSKRSFIEDLLFNKVTLADAGFIK-QYGDC 840 + + FG +N S +LP S+ + RS +EDLLF+KV + G + Y C Sbjct 837 SNAFSLANVTSFGDYNLSSVLPQRNIRSSRIAGRSALEDLLFSKVVTSGLGTVDVDYKSC 896 Query 841 LGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAM 900 ++ DL CAQ +NG+ VLP + E +A YT +L+ G + G T +A IPF++ Sbjct 897 TKGLSIADLACAQYYNGIMVLPGVADAERMAMYTGSLIGGMVLGGLT----SAAAIPFSL 952 Query 901 QMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTA--------------SALG 946 + R N + + +VL ENQK++A FN AI I S SS AL Sbjct 953 ALQARLNYVALQTDVLQENQKILAASFNKAINNIVASFSSVNDAITQTAEAIHTVTIALN 1012 Query 947 KLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQT 1006 K+QDVVNQ ALN L QL NF AIS+ + I RLD ++A+ Q+DRLITGRL +L Sbjct 1013 KIQDVVNQQGSALNHLTSQLRHNFQAISNSIQAIYDRLDSIQADQQVDRLITGRLAALNA 1072 Query 1007 YVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVT 1066 +V+Q L + E+R S LA K++ECV QS R FCG G H+ S SAP G++FLH Sbjct 1073 FVSQVLNKYTEVRGSRRLAQQKINECVKSQSNRYGFCGNGTHIFSIVNSAPDGLLFLHTV 1132 Query 1067 YVPAQEKNFTTAPAICHDGKAHF----PREGVFVSNGTHWFVTQRNFYEPQIITTDNTFV 1122 +P KN IC DG + P ++ S+ + VT R ++P++ + Sbjct 1133 LLPTDYKNVKAWSGICVDGIYGYVLRQPNLVLY-SDNGVFRVTSRVMFQPRLPVLSDFVQ 1191 Query 1123 SGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKE 1182 NC+V ++ + P+ + L ++ +N D++ N + +N+ E Sbjct 1192 IYNCNVTFVNISRVELHTVIPDYVDVNKTLQEFAQNLPKYVKPNFDLTPFNLTYLNLSSE 1251 Query 1183 ID--------------RLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIV 1228 + L + +N + +DL+ L ++E YIKWPW++WL + ++ Sbjct 1252 LKQLEAKTASLFQTTVELQGLIDQINSTYVDLKLLNRFENYIKWPWWVWLIISVVFVVLL 1311 Query 1229 MVTIMLCCMTSCCSCL-------KGCCSCGS 1252 + + C T CC C +GCC CGS Sbjct 1312 SLLVFCCLSTGCCGCCNCLTSSMRGCCDCGS 1342 >sp|Q0Q466|SPIKE_BC512 Spike glycoprotein OS=Bat coronavirus 512/2005 OX=693999 GN=S PE=3 SV=1 Length=1371 Score = 709 bits (1829), Expect = 0.0, Method: Composition-based stats. Identities = 236/816 (29%), Positives = 361/816 (44%), Gaps = 99/816 (12%) Query 463 PFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGV---GYQPYRVVVLSFELLH 519 PF R+ Y C + L+ Y + V Y + Sbjct 571 PFNRETINN-YLTFGRICFSTSPADGACELKYYVWNTIGAVSHLAGTLYVQHTKGDIITG 629 Query 520 APATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDP 579 P + G + L + C + G G GV+ +N+ FL + + A ++ Sbjct 630 TPKPLQGLNDISELHLDTCTTYTIYGFRGDGVIRLTNQTFLSGVYYTSESGQLL-AFKNV 688 Query 580 QTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTG 639 T +I +TPC ++ Q + V + + + Sbjct 689 TTGQIYSVTPCQ------------------LVQQVAFVEDRIVGVIS---------SANN 721 Query 640 SNVFQTRAGCLIGAEHVNNSYECDIP----IGAGICASYQTQTNSPRRARSVASQSIIAY 695 + F + H N++ C P G+C S SP+ A+ Sbjct 722 TGFFNSTRTFPGFYYHSNDTTNCTSPRLVYSNIGVCTSGAIGLLSPKAAQPQVQPMFQ-- 779 Query 696 TMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQ 755 +I+IPTNFT+SV TE + + SVDC MY+C + C LL Q Sbjct 780 --------------GNISIPTNFTMSVRTEYIQLFNKPVSVDCAMYVCNGNDRCKQLLSQ 825 Query 756 YGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDF--GGFNFSQILPDPSKPS 813 Y S C + AL A + + + K I F GG+NF+ ILP + P Sbjct 826 YTSACKNIESALQLSARLESMEVNSMLTVSDEALKLATISQFPGGGYNFTNILP--ANPG 883 Query 814 KRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQ 872 RS IED+LF+KV + G + + Y C ++ DL CAQ +NG+ VLP + E + Sbjct 884 ARSVIEDILFDKVVTSGLGTVDEDYKRCSNGLSIADLACAQHYNGIMVLPGVADWEKVHM 943 Query 873 YTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIG 932 Y+++L+ G G T +A +PF+ + R N + + +VL NQ+++AN FNSAI Sbjct 944 YSASLVGGMTLGGIT----SAAALPFSYAVQARLNYVALQTDVLQRNQQMLANSFNSAIS 999 Query 933 KIQ--------------DSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLN 978 I L++ A AL K+QDVVN AL+ L QL +NF AIS+ + Sbjct 1000 NITLAFESVNNAIYQTSAGLNTVAEALSKVQDVVNGQGNALSQLTVQLQNNFQAISNSIG 1059 Query 979 DILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSK 1038 DI SRLD++ A+ Q+DRLITGRL +L +V Q L + AE++AS LA K++ECV QS Sbjct 1060 DIYSRLDQITADAQVDRLITGRLAALNAFVAQSLTKYAEVQASRTLAKQKVNECVKSQSP 1119 Query 1039 RVDFCGK-GYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGK-AHFPREGVFV 1096 R FCG G H+ S Q+AP G++FLH VP N T +C D A R+ FV Sbjct 1120 RYGFCGDEGEHIFSLTQAAPQGLMFLHTVLVPNGFINVTAVTGLCVDETIAMTLRQSGFV 1179 Query 1097 S--NGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFK---EE 1151 ++ V+ R +EP+ + C + + N + P+ +E Sbjct 1180 LFVQNGNYLVSPRKMFEPRRPEVADFVQVKTCTISYVNITNNQLPDIIPDYVDVNKTIDE 1239 Query 1152 LDKYFKNHTSPDVDLGDISGINASVVNIQKEI--------------DRLNEVAKNLNESL 1197 + N+T PD+ L N + +N+ EI + L ++ +N+N +L Sbjct 1240 ILANLPNNTVPDLPL---DVFNQTFLNLTGEIADLEARSESLKNTSEELRQLIQNINNTL 1296 Query 1198 IDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIM 1233 +DLQ L + E +IKWPWY+WL + LI +V + + Sbjct 1297 VDLQWLNRVETFIKWPWYVWLAIVIALILVVSLLVF 1332 >sp|Q91AV1|SPIKE_PEDV7 Spike glycoprotein OS=Porcine epidemic diarrhea virus (strain CV777) OX=229032 GN=S PE=1 SV=1 Length=1383 Score = 707 bits (1825), Expect = 0.0, Method: Composition-based stats. Identities = 253/980 (26%), Positives = 401/980 (41%), Gaps = 168/980 (17%) Query 293 LDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYA 352 DP+S+ KC+ +F ++ G Y S+ NL + + S Sbjct 462 DDPVSQLKCSQVAFDLDDGFYPISS---------------RNLLSHEQPISFVTLPS--- 503 Query 353 WNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAP 412 + N + F G+S L ++ + F Sbjct 504 ----------FNDHSFVNITVSAAFG--GLSSANLVA---SDTTINGFS----------- 537 Query 413 GQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEI 472 ++ + + +N N +Y Y+ + + SN + ++ + Sbjct 538 ---------SFCVDTRQFTITLFYNVTN-------SYGYVSKS-QDSNCPFTLQSVNDYL 580 Query 473 YQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTN 532 + + C L Y + Y + P + G + Sbjct 581 SFSKFCVSTSLLAGACTIDLFGYPAFGSGVKLTSLYFQFTKGELITGTPKPLEGITDVSF 640 Query 533 LVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSF 592 + + C + G G G++T +N L + D A ++ + + +TPCSF Sbjct 641 MTLDVCTKYTIYGFKGEGIITLTNSSILAGVYYTSDSGQLL-AFKNVTSGAVYSVTPCSF 699 Query 593 GGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG 652 S Q A + D+ + S ++ F Sbjct 700 ------------SEQAAYVNDDI----------------VGVISSLSNSTFNNTRELPGF 731 Query 653 AEHVNNSYECDIPI----GAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYS 708 H N+ C P+ G+C S S Q IA T++ Sbjct 732 FYHSNDGSNCTEPVLVYSNIGVCKSGSIG-----YVPSQYGQVKIAPTVT---------- 776 Query 709 NNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALT 768 +I+IPTNF++S+ TE L + T SVDC Y+C ++ C LL QY + C + AL Sbjct 777 -GNISIPTNFSMSIRTEYLQLYNTPVSVDCATYVCNGNSRCKQLLTQYTAACKTIESALQ 835 Query 769 GIAVEQDKNTQEVFAQVKQIYKTPPIKDF--GGFNFSQILP----DPSKPS---KRSFIE 819 A + + ++ + I F G+NF+ +L DP+ KRS IE Sbjct 836 LSARLESVEVNSMLTISEEALQLATISSFNGDGYNFTNVLGASVYDPASGRVVQKRSVIE 895 Query 820 DLLFNKVTLADAGFIKQ-YGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALL 878 DLLFNKV G + + Y C + DL+CAQ ++G+ VLP ++ E + Y+++L+ Sbjct 896 DLLFNKVVTNGLGTVDEDYKRCSNGRSVADLVCAQYYSGVMVLPGVVDAEKLHMYSASLI 955 Query 879 AGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQ--- 935 G G T A +PF+ + R N + + +VL NQ+L+A FNSAIG I Sbjct 956 GGMALGGITA----AAALPFSYAVQARLNYLALQTDVLQRNQQLLAESFNSAIGNITSAF 1011 Query 936 -----------DSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRL 984 L++ A AL K+Q+VVN ALN L QL NF AISS ++DI SRL Sbjct 1012 ESVKEAISQTSKGLNTVAHALTKVQEVVNSQGSALNQLTVQLQHNFQAISSSIDDIYSRL 1071 Query 985 DKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFC- 1043 D + A+VQ+DRLITGRL +L +V Q L + E++AS LA K++ECV QS+R FC Sbjct 1072 DILSADVQVDRLITGRLSALNAFVAQTLTKYTEVQASRKLAQQKVNECVKSQSQRYGFCG 1131 Query 1044 GKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHF----PREGVF---- 1095 G G H+ S Q+AP G++FLH VP N +C +G+ P +F Sbjct 1132 GDGEHIFSLVQAAPQGLLFLHTVLVPGDFVNVLAIAGLCVNGEIALTLREPGLVLFTHEL 1191 Query 1096 -VSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFK---EE 1151 T +FV+ R +EP+ T + +C V + + + P+ +E Sbjct 1192 QTYTATEYFVSSRRMFEPRKPTVSDFVQIESCVVTYVNLTSDQLPDVIPDYIDVNKTLDE 1251 Query 1152 LDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNE--------------VAKNLNESL 1197 + N T P + L NA+ +N+ EI L + + N+N +L Sbjct 1252 ILASLPNRTGPSLPL---DVFNATYLNLTGEIADLEQRSESLRNTTEELRSLINNINNTL 1308 Query 1198 IDLQELGKYEQYIKWPWYIW 1217 +DL+ L + E YIKWPW++W Sbjct 1309 VDLEWLNRVETYIKWPWWVW 1328 >sp|P12651|SPIKE_IBVM Spike glycoprotein OS=Avian infectious bronchitis virus (strain M41) OX=11127 GN=S PE=3 SV=1 Length=1162 Score = 697 bits (1798), Expect = 0.0, Method: Composition-based stats. Identities = 269/1120 (24%), Positives = 435/1120 (39%), Gaps = 116/1120 (10%) Query 147 KNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSK 206 + +W S+F + T +V+ + D G + V +G + Sbjct 87 SSGMAWSSSQFCTAHCNFSDTTVFVTHCYKYDGCPITGMLQKNFLRVSAMKNGQL--FYN 144 Query 207 HTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYY 266 T + F + L + + ++ S + T Sbjct 145 LTVSVAKYPTFKSFQCVNNLTSVYLNGDLVYTSNETTDVTSAGVYFKAGGPIT------- 197 Query 267 VGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQ-TSNFRVQPTES 325 + + L Y NGT D + C P C + G Y ++ V+ Sbjct 198 -YKVMRKVKALAYFVNGTAQDVILCDGSPRGLLACQYNTGNFSDGFYPFINSSLVKQKFI 256 Query 326 IVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPT 385 + R ++ + + ++ +F +P+ Sbjct 257 VYRENSV-------------------------------NTTFTLHNFTFHNETGANPNPS 285 Query 386 KLND-LCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSK 444 + + L + A S ++ + YK + G + L++ Sbjct 286 GVQNILTYQTQTAQSGYYNF---------NFSFLSSFVYKESNFMYGSYHPSCNFRLETI 336 Query 445 VGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQP--TNG 502 G + L P + ++ +T C Y + Sbjct 337 NNGL--WFNSLSVSIAYGPLQGGCKQSVFSGRATCCYAYSYGGPSLCKGVYSGELDLNFE 394 Query 503 VGYQPYRVVVLSFELLHAPAT-VCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLP 561 G Y + A V N+ N CV++N G TG G +T + Sbjct 395 CGLLVYVTKSGGSRIQTATEPPVITRHNYNNITLNTCVDYNIYGRTGQGFITNVTDSAVS 454 Query 562 FQQF------GRDIADTTDAV--RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ 613 + D + + D + L + PC + G V +L Sbjct 455 YNYLADAGLAILDTSGSIDIFVVQGEYGLTYYKVNPCEDVNQQFVVSGGK---LVGIL-- 509 Query 614 DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICAS 673 QL + + R N C C Sbjct 510 ------TSRNETGSQLLENQFYIKITNGTRRFRR------SITENVANCPYVSYGKFCIK 557 Query 674 YQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTK 733 S + I + ++ IP +F ++VT E + M K Sbjct 558 PD------------GSIATIVPKQLEQFVAPLLNVTENVLIPNSFNLTVTDEYIQTRMDK 605 Query 734 TSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQI-YKTP 792 ++C Y+CG+S +C +L QYG C + + I ++D ++ K + TP Sbjct 606 VQINCLQYVCGNSLDCRDLFQQYGPVCDNILSVVNSIGQKEDMELLNFYSSTKPAGFNTP 665 Query 793 PIKDF--GGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAA--RD 848 + + G FN S +L PS P +RSFIEDLLF V Y +C +D Sbjct 666 FLSNVSTGEFNISLLLTTPSSPRRRSFIEDLLFTSVESVGLPTDDAYKNCTAGPLGFLKD 725 Query 849 LICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNG 908 L CA+++NGL VLPP++T EM YTS+L+A G T A IPFA Q+ R N Sbjct 726 LACAREYNGLLVLPPIITAEMQTLYTSSLVASMAFGGITA----AGAIPFATQLQARINH 781 Query 909 IGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSS 968 +G+TQ++L +NQ+ IA FN AIG++Q+ ST+ AL ++QDVVN+ + L + L+ Sbjct 782 LGITQSLLLKNQEKIAASFNKAIGRMQEGFRSTSLALQQIQDVVNKQSAILTETMASLNK 841 Query 969 NFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATK 1028 NFGAISSV+ +I +LD ++A Q+DRLITGRL SL + + + LA K Sbjct 842 NFGAISSVIQEIYQQLDAIQANAQVDRLITGRLSSLSVLASAKQAEHIRVSQQRELATQK 901 Query 1029 MSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICH----- 1083 ++ECV QS R FCG G H+++ PQ+AP+G+VF+H +Y P N T C Sbjct 902 INECVKSQSIRYSFCGNGRHVLTIPQNAPNGIVFIHFSYTPDSFVNVTAIVGFCVKPANA 961 Query 1084 DGKAHFPR--EGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP- 1140 A P G+F+ +++T R+ Y P+ IT + +C VN TV Sbjct 962 SQYAIVPANGRGIFIQVNGSYYITARDMYMPRAITAGDIVTLTSCQANYVSVNKTVITTF 1021 Query 1141 LQPELDSFKEELDKYFKN--HTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLI 1198 + + F +EL K++ + H PD D + + +++I EIDR+ V + LN+SLI Sbjct 1022 VDNDDFDFNDELSKWWNDTKHELPDFDKFNYT---VPILDIDSEIDRIQGVIQGLNDSLI 1078 Query 1199 DLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMT 1238 DL++L + YIKWPWY+WL I +++ + MT Sbjct 1079 DLEKLSILKTYIKWPWYVWLAIAFATIIFILILGWVFFMT 1118 >sp|P12722|SPIKE_IBVD2 Spike glycoprotein OS=Avian infectious bronchitis virus (strain D274) OX=11124 GN=S PE=3 SV=1 Length=1154 Score = 689 bits (1778), Expect = 0.0, Method: Composition-based stats. Identities = 256/990 (26%), Positives = 396/990 (40%), Gaps = 106/990 (11%) Query 277 LKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQ-TSNFRVQPTESIVRFPNITNL 335 L Y NGT D + C P C + G Y T++ V+ + R Sbjct 208 LAYFVNGTAQDVILCDGSPTGLLACQYNTGNFSDGFYPFTNSSLVKEKFIVYR------- 260 Query 336 CPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNV 395 + + SN V++ + + + +L F+ Sbjct 261 --------ESSVNTTLELTNFTFSN-VSNATPNTGGVQTIQLYQTSTAQSGYYNLNFS-- 309 Query 396 YADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRL 455 ++ + YK D G L++ G + L Sbjct 310 ---------------------FLSSFIYKASDYMYGSYHPSCKFRLETINNGL--WFNSL 346 Query 456 FRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSF 515 P + ++ +T C Y + T V + Sbjct 347 SVSLGYGPIQGGCKQSVFANRATCCYAYSYNGPSLCKGVYRGELTKSFECGLLVFVTKTD 406 Query 516 ----ELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQF------ 565 + + P T+ N+ ++CV +N G G G +T + + Sbjct 407 GSRIQTRNEPFTLT-QHNYNNITLDRCVEYNIYGRVGQGFITNVTNYAINYNYLADGGMA 465 Query 566 GRDIADTTDAV--RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVA 623 D + D + L + PC + G V +L Sbjct 466 ILDTSGAIDIFVVQGEYGLNYYKVNPCEDVNQQFVVSGGK---LVGIL--------TSRN 514 Query 624 IHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRR 683 Q + ++R C C Sbjct 515 ETGSQPLENQFYIKIINGTRRSRRSITGNV------TNCPYVTYGKFCIKPD-------- 560 Query 684 ARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYIC 743 S S I + ++ IP +F ++VT E + M K ++C Y+C Sbjct 561 ----GSISTIVPKELEHFVAPLLNVTENVLIPDSFNLTVTDEYIQTRMDKVQINCLQYVC 616 Query 744 GDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQI-YKTPPIKDF--GGF 800 G+S EC L QYG C + + + ++D ++ K + TP + + G F Sbjct 617 GNSLECRKLFQQYGPVCDNILSVVNSVGQKEDMELLHFYSSTKPSGFNTPVLSNVSTGEF 676 Query 801 NFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAA--RDLICAQKFNGL 858 N S +L PS S RSFIEDLLF V Y C +DL CA+++NGL Sbjct 677 NISLLLTPPSSASGRSFIEDLLFTSVESVGLPTDDAYKKCTAGPLGFLKDLACAREYNGL 736 Query 859 TVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYE 918 VLPP++T EM YTS+L+A G T + IPFA Q+ R N +G+TQ++L + Sbjct 737 LVLPPIITAEMQTLYTSSLVASMAFGGIT----SVGAIPFATQLQARINHLGITQSLLLK 792 Query 919 NQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLN 978 NQ+ IA FN AIG +Q+ ST+ AL ++QDVVN+ + L + L+ NFGAISSVL Sbjct 793 NQEKIAASFNKAIGHMQEGFRSTSLALQQIQDVVNKQSSILTETMASLNKNFGAISSVLQ 852 Query 979 DILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSK 1038 DI +LD ++A+ Q+DR+ITGRL SL + + + LA K++ECV QS Sbjct 853 DIYQQLDSIQADAQVDRIITGRLSSLSVLASAKQAEYYRVSQQRELATQKINECVKSQSI 912 Query 1039 RVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHD-----GKAHFPR-- 1091 R FCG G H+++ PQ+AP+G+VF+H TY P N T C + A P Sbjct 913 RYSFCGNGRHVLTIPQNAPNGIVFIHFTYTPESFVNVTAIVGFCVNPANASQYAIVPANG 972 Query 1092 EGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP-LQPELDSFKE 1150 G+F+ +++T R+ Y P+ IT + +C VN TV + + F + Sbjct 973 RGIFIQVNGSYYITARDMYMPRDITAGDIVTLTSCQANYVSVNKTVITTFVDNDDFDFDD 1032 Query 1151 ELDKYFKN--HTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQ 1208 EL K++ + H PD D + + +++I EIDR+ V + LN+SLIDL+ L + Sbjct 1033 ELSKWWNDTKHELPDFDEFNYT---VPILDIGSEIDRIQGVIQGLNDSLIDLETLSILKT 1089 Query 1209 YIKWPWYIWLGFIAGLIAIVMVTIMLCCMT 1238 YIKWPWY+WL I +++ L MT Sbjct 1090 YIKWPWYVWLAIAFATIIFILILGWLFFMT 1119 >sp|P05135|SPIKE_IBV6 Spike glycoprotein OS=Avian infectious bronchitis virus (strain 6/82) OX=11121 GN=S PE=3 SV=1 Length=1163 Score = 689 bits (1777), Expect = 0.0, Method: Composition-based stats. Identities = 257/990 (26%), Positives = 396/990 (40%), Gaps = 106/990 (11%) Query 277 LKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQ-TSNFRVQPTESIVRFPNITNL 335 L Y NGT D + C P C + G Y T++ V+ + R Sbjct 208 LAYFVNGTAQDVILCDGSPTGLLACQYNTGNFSDGFYPFTNSSLVKEKFIVYR------- 260 Query 336 CPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNV 395 + + SN V++ + + + Sbjct 261 --------ESSVNTTLELTNFTFSN-VSNATPNTGGVQTIQL--------------YQTI 297 Query 396 YADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRL 455 A S ++ + YK D G L++ G + L Sbjct 298 TAQSGYYNL---------NFSFLSSFIYKASDYMYGSYHPSCKFRLETINNGL--WFNSL 346 Query 456 FRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSF 515 P + ++ +T C Y + T V + Sbjct 347 SVSLGYGPIQGGCKQSVFANRATCCYAYSYNGPSLCKGVYRGELTKSFECGLLVFVTKTD 406 Query 516 ----ELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQF------ 565 + + P T+ N+ ++CV +N G G G +T + + Sbjct 407 GSRIQTRNEPFTLT-QHNYNNITLDRCVEYNIYGRVGQGFITNVTNYAINYNYLADGGMA 465 Query 566 GRDIADTTDAV--RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVA 623 D + D + L + PC + G V +L Sbjct 466 ILDTSGAIDIFVVQGEYGLNYYKVNPCEDVNQQFVVSGGK---LVGIL--------TSRN 514 Query 624 IHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRR 683 Q + ++R C C Sbjct 515 ETGSQPLENQFYIKIINGTRRSRRSITGNV------TNCPYVTYGKFCIKPD-------- 560 Query 684 ARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYIC 743 S S I + ++ IP +F ++VT E + M K ++C Y+C Sbjct 561 ----GSISTIVPKELEHFVAPLLNVTENVLIPDSFNLTVTDEYIQTRMDKVQINCLQYVC 616 Query 744 GDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQI-YKTPPIKDF--GGF 800 G+S EC L QYG C + + + ++D ++ K + TP + + G F Sbjct 617 GNSLECRKLFQQYGPVCDNILSVVNSVGQKEDMELLYFYSSTKPSGFNTPVLSNVSTGEF 676 Query 801 NFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAA--RDLICAQKFNGL 858 N S +L PS S RSFIEDLLF V Y C +DL CA+++NGL Sbjct 677 NISLLLTPPSSASGRSFIEDLLFTSVESVGLPTDDAYKKCTAGPLGFLKDLACAREYNGL 736 Query 859 TVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYE 918 VLPP++T EM YTS+L+A G T +A IPFA Q+ R N +G+TQ++L++ Sbjct 737 LVLPPIITAEMQTLYTSSLVASMAFGGIT----SAGAIPFATQLQARINHLGITQSLLFK 792 Query 919 NQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLN 978 NQ+ IA FN AIG +Q+ ST+ AL ++QDVVN+ + L + L+ NFGAISSVL Sbjct 793 NQEKIAASFNKAIGHMQEGFRSTSLALQQIQDVVNKQSSILTETMASLNKNFGAISSVLQ 852 Query 979 DILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSK 1038 DI +LD ++A+ Q+DR+ITGRL SL + + + LA K++ECV QS Sbjct 853 DIYQQLDSIQADAQVDRIITGRLSSLSVLASAKQAEYYRVSQQRELATQKINECVKSQSI 912 Query 1039 RVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHD-----GKAHFPR-- 1091 R FCG G H+++ PQ+AP+G+VF+H TY P N T C + A P Sbjct 913 RYSFCGNGRHVLTIPQNAPNGIVFIHFTYTPESFVNVTAIVGFCVNPANASQYAIVPANG 972 Query 1092 EGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP-LQPELDSFKE 1150 G+F+ +++T R+ Y P+ IT + +C VN TV + + F + Sbjct 973 RGIFIQVNGSYYITARDMYMPRDITAGDIVTLTSCQANYVSVNKTVITTFVDNDDFDFDD 1032 Query 1151 ELDKYFKN--HTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQ 1208 EL K++ + H PD D + + +++I EIDR+ V + LN+SLIDL+ L + Sbjct 1033 ELSKWWNDTKHELPDFDEFNYT---VPILDIGSEIDRIQGVIQGLNDSLIDLETLSILKT 1089 Query 1209 YIKWPWYIWLGFIAGLIAIVMVTIMLCCMT 1238 YIKWPWY+WL I ++V + MT Sbjct 1090 YIKWPWYVWLAIAFLTIIFILVLCWIFFMT 1119 >sp|P12650|SPIKE_IBVK Spike glycoprotein OS=Avian infectious bronchitis virus (strain KB8523) OX=11126 GN=S PE=3 SV=1 Length=1162 Score = 688 bits (1776), Expect = 0.0, Method: Composition-based stats. Identities = 260/990 (26%), Positives = 402/990 (41%), Gaps = 106/990 (11%) Query 277 LKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQ-TSNFRVQPTESIVRFPNITNL 335 L Y NGT D + C P C + G Y T++ V+ + R ++ Sbjct 207 LAYFVNGTAQDVILCDGSPRGLLACQYNTGNFSDGFYPFTNSSLVKQKFIVYRENSV--- 263 Query 336 CPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDL-CFTN 394 + + ++ +F +P+ + ++ + Sbjct 264 ----------------------------NTTFTLHNFTFHNETGANPNPSGVQNIQTYQT 295 Query 395 VYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYR 454 A S ++ + YK + G S L++ G + Sbjct 296 QTAQSGYYNF---------NFSFLSSFVYKESNFMYGSYHPSCSFRLETINNGL--WFNS 344 Query 455 LFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQP--TNGVGYQPYRVVV 512 L P + ++ +T C Y + G Y Sbjct 345 LSVSIAYGPLQGGCKQSVFSGRATCCYAYSYGGPLLCKGVYSGELDHNFECGLLVYVTKS 404 Query 513 LSFELLHAPAT-VCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQF------ 565 + A V N+ N CV++N G G G +T + + Sbjct 405 GGSRIQTATEPPVITQHNYNNITLNTCVDYNIYGRIGQGFITNVTDSAVSYNYLADAGLA 464 Query 566 GRDIADTTDAV--RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVA 623 D + + D + L + PC + G V +L Sbjct 465 ILDTSGSIDIFVVQSEYGLNYYKVNPCEDVNQQFVVSGGK---LVGIL--------TSRN 513 Query 624 IHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRR 683 QL + + R E+ C C Sbjct 514 ETGSQLLENQFYIKITNGTRRFRRSITESVEN------CPYVSYGKFCIKPD-------- 559 Query 684 ARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYIC 743 S S I + ++ IP +F ++VT E + M K ++C YIC Sbjct 560 ----GSISTIVPKYLEQFVAPLLNVTENVLIPNSFNLTVTDEYIQTRMDKVQINCLQYIC 615 Query 744 GDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQI-YKTPPIKDF--GGF 800 G+S EC NL QYG C + + + ++D ++ K + TP + + G F Sbjct 616 GNSLECRNLFQQYGPVCDNMLSVVNSVGQKEDMELLNFYSSTKPAGFNTPVLSNVSTGEF 675 Query 801 NFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAA--RDLICAQKFNGL 858 N S L PS P +RSFIEDLLF V Y +C +DL+CA+++NGL Sbjct 676 NISLFLTTPSSPRRRSFIEDLLFTSVESVGLPTDDAYKNCTAGPLGFLKDLVCAREYNGL 735 Query 859 TVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYE 918 VLPP++T EM YTS+L+A G T A IPFA Q+ R N +G+TQ++L + Sbjct 736 LVLPPIITAEMQTLYTSSLVASMAFGGITA----AGAIPFATQLQARINHLGITQSLLLK 791 Query 919 NQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLN 978 NQ+ IA FN AIG +Q+ ST+ AL ++QDVVN+ + L + L+ NFGAISSV+ Sbjct 792 NQEKIAASFNKAIGHMQEGFRSTSLALQQIQDVVNKQSAILTETMASLNKNFGAISSVIQ 851 Query 979 DILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSK 1038 +I +LD ++A Q+DRLITGRL SL + + + LA K++ECV QS Sbjct 852 EIYLQLDAIQANAQVDRLITGRLSSLSVLASAKQAEYIRVSQQRELATQKINECVKSQST 911 Query 1039 RVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICH-----DGKAHFP--R 1091 R FCG G H+++ PQ+AP+G+VF+H TY P N T C A P Sbjct 912 RYSFCGNGRHVLTIPQNAPNGIVFIHFTYTPESFVNVTAIVGFCVKPNNASQYAIVPVNG 971 Query 1092 EGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP-LQPELDSFKE 1150 G+F+ +++T R+ Y P+ IT + +C VN TV ++ + F + Sbjct 972 RGIFIQVNDSYYITARDMYMPRHITAGDIVTLTSCQANYVSVNKTVITTFVENDDFDFDD 1031 Query 1151 ELDKYF--KNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQ 1208 EL K++ + PD D + + V+NI +ID++ EV K LN+SLIDL+ L + Sbjct 1032 ELSKWWIETKYELPDFDQFNYT---IPVLNITYDIDKIEEVIKGLNDSLIDLETLSILKT 1088 Query 1209 YIKWPWYIWLGFIAGLIAIVMVTIMLCCMT 1238 YIKWPWY+WL I +++ + MT Sbjct 1089 YIKWPWYVWLAIAFATIIFILILGWVFFMT 1118 >sp|P11223|SPIKE_IBVB Spike glycoprotein OS=Avian infectious bronchitis virus (strain Beaudette) OX=11122 GN=S PE=1 SV=1 Length=1162 Score = 687 bits (1772), Expect = 0.0, Method: Composition-based stats. Identities = 253/989 (26%), Positives = 394/989 (40%), Gaps = 104/989 (11%) Query 277 LKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQ-TSNFRVQPTESIVRFPNITNL 335 L Y NGT D + C P C + G Y T++ V+ + R ++ Sbjct 207 LAYFVNGTAQDVILCDGSPRGLLACQYNTGNFSDGFYPFTNSSLVKQKFIVYRENSVNTT 266 Query 336 CPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNV 395 C L+N + N + Sbjct 267 C------------------------------TLHNFIFHNETGANPNPSGVQNIQTYQTK 296 Query 396 YADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRL 455 A S ++ + YK + G L++ G + L Sbjct 297 TAQSGYYNF---------NFSFLSSFVYKESNFMYGSYHPSCKFRLETINNGL--WFNSL 345 Query 456 FRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQP--TNGVGYQPYRVVVL 513 P + +++ +T C Y + G Y Sbjct 346 SVSIAYGPLQGGCKQSVFKGRATCCYAYSYGGPSLCKGVYSGELDHNFECGLLVYVTKSG 405 Query 514 SFELLHAPATVCGPKKS-TNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQF------G 566 + A + + N+ N CV++N G TG G +T + + Sbjct 406 GSRIQTATEPPVITQNNYNNITLNTCVDYNIYGRTGQGFITNVTDSAVSYNYLADAGLAI 465 Query 567 RDIADTTDAV--RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAI 624 D + + D + L + PC + G V +L Sbjct 466 LDTSGSIDIFVVQGEYGLNYYKVNPCEDVNQQFVVSGGK---LVGIL--------TSRNE 514 Query 625 HADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRA 684 QL + + R N C C Sbjct 515 TGSQLLENQFYIKITNGTRRFRR------SITENVANCPYVSYGKFCIKPD--------- 559 Query 685 RSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICG 744 S + I + ++ IP +F ++VT E + M K ++C Y+CG Sbjct 560 ---GSIATIVPKQLEQFVAPLFNVTENVLIPNSFNLTVTDEYIQTRMDKVQINCLQYVCG 616 Query 745 DSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQI-YKTPPIKDF--GGFN 801 S +C L QYG C + + + ++D ++ K + TP + + G FN Sbjct 617 SSLDCRKLFQQYGPVCDNILSVVNSVGQKEDMELLNFYSSTKPAGFNTPVLSNVSTGEFN 676 Query 802 FSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAA--RDLICAQKFNGLT 859 S +L +PS KRS IEDLLF V Y +C +DL CA+++NGL Sbjct 677 ISLLLTNPSSRRKRSLIEDLLFTSVESVGLPTNDAYKNCTAGPLGFFKDLACAREYNGLL 736 Query 860 VLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYEN 919 VLPP++T EM A YTS+L+A G T A IPFA Q+ R N +G+TQ++L +N Sbjct 737 VLPPIITAEMQALYTSSLVASMAFGGITA----AGAIPFATQLQARINHLGITQSLLLKN 792 Query 920 QKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLND 979 Q+ IA FN AIG +Q+ ST+ AL ++QDVV++ + L + L+ NFGAISSV+ + Sbjct 793 QEKIAASFNKAIGHMQEGFRSTSLALQQIQDVVSKQSAILTETMASLNKNFGAISSVIQE 852 Query 980 ILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKR 1039 I + D ++A Q+DRLITGRL SL + + + LA K++ECV QS R Sbjct 853 IYQQFDAIQANAQVDRLITGRLSSLSVLASAKQAEYIRVSQQRELATQKINECVKSQSIR 912 Query 1040 VDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICH-----DGKAHFPR--E 1092 FCG G H+++ PQ+AP+G+VF+H +Y P N T C A P Sbjct 913 YSFCGNGRHVLTIPQNAPNGIVFIHFSYTPDSFVNVTAIVGFCVKPANASQYAIVPANGR 972 Query 1093 GVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP-LQPELDSFKEE 1151 G+F+ +++T R+ Y P+ IT + +C VN TV + + F +E Sbjct 973 GIFIQVNGSYYITARDMYMPRAITAGDVVTLTSCQANYVSVNKTVITTFVDNDDFDFNDE 1032 Query 1152 LDKYFKN--HTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQY 1209 L K++ + H PD D + + +++I EIDR+ V + LN+SLIDL++L + Y Sbjct 1033 LSKWWNDTKHELPDFDKFNYT---VPILDIDSEIDRIQGVIQGLNDSLIDLEKLSILKTY 1089 Query 1210 IKWPWYIWLGFIAGLIAIVMVTIMLCCMT 1238 IKWPWY+WL I +++ + MT Sbjct 1090 IKWPWYVWLAIAFATIIFILILGWVFFMT 1118 >sp|P17662|SPIKE_IBVD3 Spike glycoprotein (Fragment) OS=Avian infectious bronchitis virus (strain D3896) OX=11125 GN=S PE=3 SV=2 Length=550 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 50/340 (15%), Positives = 89/340 (26%), Gaps = 55/340 (16%) Query 277 LKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQ-TSNFRVQPTESIVRFPNITNL 335 L Y NGT D + C P C + G Y T++ V+ + R ++ Sbjct 208 LAYFVNGTAQDVILCDGSPTGLLACQYNTGNFSDGFYPFTNSSLVKEKFIVYRESSVNTT 267 Query 336 CPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNV 395 + +SN + T + Y S + F Sbjct 268 LELT------------NFTFSNVSNANPNTG------GVHTIQLYQTSTAQSGHYNF--- 306 Query 396 YADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRL 455 ++ + YK D G L++ G + L Sbjct 307 ------------------NFSFLSSFTYKESDYMYGSYHPSCKFRLETINNGL--WFNSL 346 Query 456 FRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSF 515 P + ++Q +T C Y + T V + Sbjct 347 SVSLGYGPIQGGCKQSVFQNRATCCYAYSYNGPPLCKGVYRGELTKSFECGLLVFVTKTD 406 Query 516 ----ELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQF------ 565 + + P T+ N+ ++CV +N G G G +T + + Sbjct 407 GSRIQTRNEPFTLT-QHNYNNITLDRCVEYNIYGRVGQGFITNVTNYAINYNYLADGGMA 465 Query 566 GRDIADTTDAV--RDPQTLEILDITPCSFGGVSVITPGTN 603 D + D + L + PC + G Sbjct 466 ILDTSGAIDIFVVQGEYGLNYYKVNPCEDVNQQFVVSGGK 505 >sp|P30207|SPIKE_IBVU2 Spike glycoprotein (Fragment) OS=Avian infectious bronchitis virus (strain UK/142/86) OX=31627 GN=S PE=3 SV=1 Length=520 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 48/339 (14%), Positives = 86/339 (25%), Gaps = 53/339 (16%) Query 277 LKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLC 336 L Y NGT D + C P C + G Y +N Sbjct 190 LAYFVNGTAQDVILCDGSPTGLLACQYNTGNFSDGFYPFTN------------------- 230 Query 337 PFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVY 396 S + V S + + + F VS N + Sbjct 231 ------------SSLVKEKFI----VYRESSVNTTLELTNFTFSNVSNATPNTGGVQTIQ 274 Query 397 ADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLF 456 + + ++ + YK D G L++ G + L Sbjct 275 LYQTITAQSGYYNL---NFSFLSSFIYKASDYMYGSYHPRCKFRLETINNGL--WFNSLS 329 Query 457 RKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSF- 515 P + +++ +T C Y + T V + Sbjct 330 VSLGYGPIQGGCKQSVFENRATCCYAYSYNGPSLCKGVYRGELTKSFECGLLVFVTKTDG 389 Query 516 ---ELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQF------G 566 ++ + P T+ N+ ++CV +N G G G +T + + Sbjct 390 SRIQIRNEPLTLT-QHNYNNITLDRCVEYNIYGRVGQGFITNVTNYAINYNYLADGGMAI 448 Query 567 RDIADTTDAV--RDPQTLEILDITPCSFGGVSVITPGTN 603 D + D + L + PC + G Sbjct 449 LDTSGAIDIFVVQGEYGLNYYKVNPCEDVNQQFVVSGGK 487 >sp|P30208|SPIKE_IBVU3 Spike glycoprotein (Fragment) OS=Avian infectious bronchitis virus (strain UK/167/84) OX=31628 GN=S PE=3 SV=1 Length=520 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 48/340 (14%), Positives = 90/340 (26%), Gaps = 55/340 (16%) Query 277 LKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQ-TSNFRVQPTESIVRFPNITNL 335 L Y NGT D + C P C + G Y T++ V+ + R Sbjct 190 LAYFVNGTAQDVILCDGSPTGLLACQYNTGNFSDGFYPFTNSSLVKEKFIVYR------- 242 Query 336 CPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNV 395 + + SN V++ + + + +L F+ Sbjct 243 --------ESSVNTTLELTNFTFSN-VSNATPNTGGVQTIQLYQTKTAQSGYYNLNFS-- 291 Query 396 YADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRL 455 ++ ++YK D G L++ G + L Sbjct 292 ---------------------FLSSFSYKASDYMYGSYHPSCKFRLETINNGF--WFNPL 328 Query 456 FRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSF 515 P + ++ +T C Y + T V + Sbjct 329 SVSLGYGPIQGGCKQSVFANRATCCYAYSYNGPSLCKGVYRGELTKSFECGLLVFVTKTD 388 Query 516 ----ELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQF------ 565 + + P T+ N+ ++CV +N G G G +T + + Sbjct 389 GSRIQTRNEPFTLT-QHNYNNITLDRCVEYNIYGRVGQGFITNVTNYAINYNYLADGGMA 447 Query 566 GRDIADTTDAV--RDPQTLEILDITPCSFGGVSVITPGTN 603 D + D + L + PC + G Sbjct 448 ILDTSGAIDIFVVQGEYGLNYYKVNPCEDVNQQFVVSGGK 487 >sp|P30206|SPIKE_IBVU1 Spike glycoprotein (Fragment) OS=Avian infectious bronchitis virus (strain UK/123/82) OX=31626 GN=S PE=3 SV=1 Length=520 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 48/341 (14%), Positives = 87/341 (26%), Gaps = 57/341 (17%) Query 277 LKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQ-TSNFRVQPTESIVRFPNITNL 335 L Y NGT D + C P C + G Y T++ V+ + R ++ Sbjct 190 LAYFVNGTAQDVILCDGSPTGLLACQYNTGNFSDGFYPFTNSSLVKEKFIVYRESSVNTT 249 Query 336 CPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSAS----FSTFKCYGVSPTKLNDLC 391 +S + N+ T + Y S + Sbjct 250 LDVT----------------------NFTFSNVSNATPNTGGVHTIQLYQTSTAQSGYYN 287 Query 392 FTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNY 451 F + SF+ + + ++L G + +N ++ G Sbjct 288 FNFSFLSSFIYKESDYMY-----GSYHPSCKFRLETINNG--LXFNPLSVSLGYGPIQGG 340 Query 452 LYRLFRKSNLKPFERDISTEIYQAGSTP-CNGVEGFNCYFPLQSYGFQPTNGVGYQPYRV 510 + ++ R Y P C GV + + Sbjct 341 CKQSVFEN------RATCCYAYSYNGPPLCKGVYRGELTKSFECGLLVFVTKTDGSRIQT 394 Query 511 VVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQF----- 565 F L N+ ++CV +N G G G +T + + Sbjct 395 RNEPFTLTQ--------HNYNNITLDRCVEYNIYGRVGQGFITNVTNYAINYNYLADGGM 446 Query 566 -GRDIADTTDAV--RDPQTLEILDITPCSFGGVSVITPGTN 603 D + D + L + PC + G Sbjct 447 AILDTSGAIDIFVVQGEYGLNYYKVNPCEDVNQQFVVSGGK 487 >sp|B0R6I4|BAST_HALS3 Transducer protein BasT OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) OX=478009 GN=basT PE=1 SV=1 Length=805 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 56/123 (46%), Gaps = 18/123 (15%) Query 911 VTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNF 970 + ++V E + IA FN +G ++ +L+ S + D V+ + ++T ++ S Sbjct 462 LDEDVDSEPMQDIAEAFNDMMGDVEATLAQVRS----IADAVDAASTDVSTSAAEIRSAS 517 Query 971 GAISSVLNDILSRLDKVEAEVQIDRL--ITGRLQSLQTYVTQQLIRAAEIRASANLAATK 1028 +S + DI +A+ Q DRL + + SL V EI ASA+ A Sbjct 518 DQVSESVQDI-----SADADQQRDRLGTVGDEVTSLSATV-------EEIAASADDVAET 565 Query 1029 MSE 1031 +++ Sbjct 566 VNQ 568 >sp|B8F3P6|MUKF_GLAP5 Chromosome partition protein MukF OS=Glaesserella parasuis serovar 5 (strain SH0165) OX=557723 GN=mukF PE=3 SV=1 Length=443 Score = 41.7 bits (96), Expect = 0.043, Method: Composition-based stats. Identities = 29/113 (26%), Positives = 57/113 (50%), Gaps = 17/113 (15%) Query 897 PFAMQMAYRFNGIGVTQNVLYENQK--------LIANQFNSAIGKIQDSLSSTASALGKL 948 P +A F+ I ++Q ++ ENQ+ L++ ++ AI Q L T+ L +L Sbjct 160 PLKFSVAEIFDSIDLSQRMMDENQQQIRERIAMLLSQNWHEAIATCQQLLDETSGNLREL 219 Query 949 QDVVNQNAQALNTLVKQLSSNFGAISSVLN-DILSRLDKVEAEVQ--IDRLIT 998 QDV+N + L + + ++ S ++ D L +D++ +Q +DR+I+ Sbjct 220 QDVLNASGDKLQSQLLRIQ------SCLIGRDDLDFVDQLIVNLQNKLDRIIS 266 >sp|A8F461|FLGI_PSELT Flagellar P-ring protein OS=Pseudothermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / NBRC 107922 / TMO) OX=416591 GN=flgI PE=3 SV=1 Length=331 Score = 40.5 bits (93), Expect = 0.075, Method: Composition-based stats. Identities = 50/267 (19%), Positives = 89/267 (33%), Gaps = 21/267 (8%) Query 545 GLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEIL---DITPCSFGG----VSV 597 GL GTG + N L +++ +D+++ + ++ DI P G VSV Sbjct 44 GLNGTGDSGQVNSTLLANMAKAFNVSIDSDSLKTKNSALVMVFADIPPFYKEGMRLDVSV 103 Query 598 ITPGTNTSNQVAVLYQD--VNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEH 655 + G S + L Q A+ ++ +N+ ++G Sbjct 104 ASIGDAKSLEGGFLVQTPLYGADGNVYAVAQGNVSVGGFDVKVSANLQNKYR--IVGYIP 161 Query 656 VNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIP 715 E +IP S P S I T +V S+ I +P Sbjct 162 NGAIVEKEIPFEFVQSNSVTILLKKPDFTTSARVAQAINTTFERKIAKAVDASSIKIEVP 221 Query 716 TNF-----TISVTTEILPVSMT---KTSVD--CTMYICGDSTECSNLLLQYGSFCTQLNR 765 + F T E + VS+ + V+ + G + + + L YG F + Sbjct 222 SAFEDDIVTFLSLVEEVEVSVDQPARVVVNEKTGTVVFGGNVKILDFTLSYGVFNITVKN 281 Query 766 ALTGIAVEQDKNTQEVFAQVKQIYKTP 792 + E D + + +K + TP Sbjct 282 GKVESSEEVDATVSSLVSALKNLGATP 308 >sp|P30141|MRP4_STRPY Fibrinogen- and Ig-binding protein OS=Streptococcus pyogenes OX=1314 GN=mrp4 PE=3 SV=1 Length=388 Score = 40.1 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 33/144 (23%), Positives = 54/144 (38%), Gaps = 29/144 (20%) Query 899 AMQMAYR-----FNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVN 953 A++ R N + T + E + IA + A K Q +L + + ++ D+ N Sbjct 68 ALEKQARDLGDTINHMSQT---ISEQSRKIAALKSEAELKNQQALEALNNKNKQISDLTN 124 Query 954 QNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI 1013 +NA QL AI + I + ++ A+ Q L +Q Sbjct 125 ENA--------QLKE---AIEGYVQTIQNASREIAAKQQ----------ELAAAKSQLEA 163 Query 1014 RAAEIRASANLAATKMSECVLGQS 1037 + AEI A A+K E QS Sbjct 164 KNAEIEALKQQDASKTEEIAKLQS 187 >sp|Q3BUW9|CCME1_XANC5 Cytochrome c-type biogenesis protein CcmE 1 OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) OX=316273 GN=ccmE1 PE=3 SV=1 Length=156 Score = 38.2 bits (87), Expect = 0.15, Method: Composition-based stats. Identities = 21/89 (24%), Positives = 37/89 (42%), Gaps = 9/89 (10%) Query 862 PPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAM---QMAYRFNGIGVTQNVLYE 918 P ++ A Y L G + +G AG +L++ F + A + G+ ++ + Sbjct 40 PSQVSAGEAAGYQQFRLGGMVKAGSIQRAGDSLKVSFTVIDKNAATQVEYTGILPDLFRD 99 Query 919 NQKLIANQFNSAIGKIQDSLSSTASALGK 947 NQ +IAN G++Q L K Sbjct 100 NQSVIAN------GRMQGGRFVANEVLAK 122 >sp|Q6LUI8|PNP_PHOPR Polyribonucleotide nucleotidyltransferase OS=Photobacterium profundum (strain SS9) OX=298386 GN=pnp PE=3 SV=1 Length=707 Score = 38.2 bits (87), Expect = 0.66, Method: Composition-based stats. Identities = 28/158 (18%), Positives = 65/158 (41%), Gaps = 29/158 (18%) Query 900 MQMAYRFNGIGVTQNVLY--ENQ-----KLIANQFNSAIGKIQDSLSSTASALG------ 946 + G+T+ ++ NQ K I + + AIG +D +S A + Sbjct 502 TALQMDIKIEGITKEIMQIALNQAKGARKHILSVMDDAIGTHRDDISQFAPRIHTMKINS 561 Query 947 -KLQDVVNQNAQALNTLVKQLSSNF-----GAIS------SVLNDILSRLDKVEAEVQID 994 K++DV+ + + L ++ + G I + + + R++++ A+V++ Sbjct 562 DKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAATEGAAAKEAIRRIEEITADVEVG 621 Query 995 RLITG---RLQSLQTYVTQQLIRAAEIRASANLAATKM 1029 R+ TG R+ +V+ + + S +A ++ Sbjct 622 RIYTGKVMRIVDFGAFVSVIGAKEGLVHIS-QIAQERV 658 >sp|Q9X0M7|MCP2_THEMA Methyl-accepting chemotaxis protein 2 OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=mcp2 PE=1 SV=1 Length=530 Score = 37.8 bits (86), Expect = 0.77, Method: Composition-based stats. Identities = 15/76 (20%), Positives = 37/76 (49%), Gaps = 3/76 (4%) Query 928 NSAIGKIQDSLSSTASALGKLQDVVN---QNAQALNTLVKQLSSNFGAISSVLNDILSRL 984 N + I ++ +A+ ++ + +NA+ + VK++++ IS+ ++ SR+ Sbjct 452 NEMLQNIAAAIEEQTAAVDEITTAMTENAKNAEEITNSVKEVNARLQEISASTEEVTSRV 511 Query 985 DKVEAEVQIDRLITGR 1000 + VQ+ + I R Sbjct 512 QTIRENVQMLKEIVAR 527 >sp|Q08581|SLK19_YEAST Kinetochore protein SLK19 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SLK19 PE=1 SV=1 Length=821 Score = 37.8 bits (86), Expect = 0.92, Method: Composition-based stats. Identities = 31/142 (22%), Positives = 64/142 (45%), Gaps = 16/142 (11%) Query 905 RFNGIGVTQNVLYENQKLIANQFNSAI---GKIQDSLSSTASALGKLQDVVNQNAQALNT 961 R + VL NQK++ +F+++I I+ +T + L + + ++N L Sbjct 379 RIKELNTEIKVLNSNQKILQEKFDASITEVNHIKGEHENTVNTLQQNEKILNDKNVELEN 438 Query 962 LVKQLSSNFGAIS---SVLNDILSRL----DKVEA-----EVQIDRLITGRLQSLQTY-V 1008 + +L N +S + LND+ SR+ DK+E+ + + + L +L +T + Sbjct 439 MKAELKGNNDKLSEYETTLNDLNSRIVQLNDKIESTDIVLKSKENELDNLKLSLKETLSI 498 Query 1009 TQQLIRAAEIRASANLAATKMS 1030 ++ + I L +TK + Sbjct 499 SKDFNDSDLIGQINELISTKNN 520 >sp|Q8PLW2|CCME1_XANAC Cytochrome c-type biogenesis protein CcmE 1 OS=Xanthomonas axonopodis pv. citri (strain 306) OX=190486 GN=ccmE1 PE=3 SV=1 Length=156 Score = 35.9 bits (81), Expect = 1.1, Method: Composition-based stats. Identities = 21/89 (24%), Positives = 36/89 (40%), Gaps = 9/89 (10%) Query 862 PPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAM---QMAYRFNGIGVTQNVLYE 918 P + A Y L G + +G AG +L++ F + A + G+ ++ + Sbjct 40 PSQVRAGEAAGYQQFRLGGMVKAGSIQRAGDSLKVSFIVIDKNAATQVEYTGILPDLFRD 99 Query 919 NQKLIANQFNSAIGKIQDSLSSTASALGK 947 NQ +IAN G++Q L K Sbjct 100 NQSVIAN------GRMQGGRFVANEVLAK 122 >sp|Q8PA33|CCME1_XANCP Cytochrome c-type biogenesis protein CcmE 1 OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) OX=190485 GN=ccmE1 PE=3 SV=1 Length=156 Score = 35.5 bits (80), Expect = 1.4, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 9/89 (10%) Query 862 PPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAM---QMAYRFNGIGVTQNVLYE 918 P + A Y L G + +G A +L + F + A + G+ ++ + Sbjct 40 PSQVDAGAAAGYQQFRLGGMVKAGSIQRATDSLTVTFKVIDKHAATQVEYTGILPDLFRD 99 Query 919 NQKLIANQFNSAIGKIQDSLSSTASALGK 947 NQ +IAN G++Q L K Sbjct 100 NQSVIAN------GRMQAGRFVANEVLAK 122 >sp|Q4UTK2|CCME1_XANC8 Cytochrome c-type biogenesis protein CcmE 1 OS=Xanthomonas campestris pv. campestris (strain 8004) OX=314565 GN=ccmE1 PE=3 SV=1 Length=156 Score = 35.5 bits (80), Expect = 1.4, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 9/89 (10%) Query 862 PPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAM---QMAYRFNGIGVTQNVLYE 918 P + A Y L G + +G A +L + F + A + G+ ++ + Sbjct 40 PSQVDAGAAAGYQQFRLGGMVKAGSIQRATDSLTVTFKVIDKHAATQVEYTGILPDLFRD 99 Query 919 NQKLIANQFNSAIGKIQDSLSSTASALGK 947 NQ +IAN G++Q L K Sbjct 100 NQSVIAN------GRMQAGRFVANEVLAK 122 >sp|P0DM86|CRFC_ECOLX Clamp-binding protein CrfC OS=Escherichia coli OX=562 GN=crfC PE=3 SV=1 Length=742 Score = 36.7 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 14/100 (14%) Query 934 IQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQ- 992 I+ +L+S L + QD +N AL F S L+++ +R + + Q Sbjct 480 IELALTSANHFLRQQQDALNAQLAAL----------FQDDSEPLSEMRTRCETLLQTAQN 529 Query 993 -IDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSE 1031 I R T R L++ + + L IR ++SE Sbjct 530 TISRDFTLRFAELESTLCRVLTDV--IRPIEQQVKMELSE 567 >sp|Q008X4|SPIKE_WBV24 Spike glycoprotein OS=White bream virus (isolate Blicca bjoerkna L./Germany/DF24/00) OX=766180 GN=S PE=3 SV=1 Length=1220 Score = 36.7 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 55/384 (14%), Positives = 113/384 (29%), Gaps = 86/384 (22%) Query 638 TGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTM 697 GS F G + ++ P + + P + T Sbjct 644 NGSYQFDQFVGGALNL--RTLTFTMRKPTQLYVLDPIEGTYIIPDYQTKFPLLTSGTQTY 701 Query 698 SLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYG 757 + +V + + +F+I +++ +C +IC C Y Sbjct 702 YYDPDQTVTNTTEVSKVTIDFSIRTM-----ITLDPLVFNCEEFICDKDPTCRTQFSSYC 756 Query 758 SFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSF 817 + AL + +++ + + ++ + T + + R Sbjct 757 QTTQPILAALKDAFEKYNRSIADYTSTIRALTNTT----------QDLFASATPVRYRRG 806 Query 818 IEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSAL 877 +E G+ DL Sbjct 807 VE---------VPLGYGHDLEQ---PSWVYDL---------------------------- 826 Query 878 LAGTITSGWTFGAGAALQIPFAMQ-MAYRFNGI--GVTQNVLYENQK--LIANQFNSAIG 932 GT W A A ++ + + I GV Q++ N K I N ++ + Sbjct 827 -GGTAIVPWIGTAVAVGKLANRVASIEATLYQITQGVKQSIQSTNDKFDKITNILHTHLR 885 Query 933 KIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA--- 989 + + L T + LN KQ+ F I++V ++ + +D+++ Sbjct 886 PVTEGLVRTN--------------EQLNAFSKQVRDQFTMINTVTTELSAYVDQLQQVFT 931 Query 990 -----EVQIDRLITGRLQSLQTYV 1008 + QI ++I+ +L SLQ YV Sbjct 932 VGAFYQNQILQVIS-QLNSLQVYV 954 >sp|O54990|PROM1_MOUSE Prominin-1 OS=Mus musculus OX=10090 GN=Prom1 PE=1 SV=1 Length=867 Score = 36.7 bits (83), Expect = 2.0, Method: Composition-based stats. Identities = 25/120 (21%), Positives = 50/120 (42%), Gaps = 11/120 (9%) Query 1129 VIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVD--LGDISGINASVVNIQKEI--- 1183 + V+ T + L + +E+ +N T + + I++++ ++ + I Sbjct 345 TVTEVDKTDLESLVKRGYTTIDEIPNTIQNQTVDVIKDVKNTLDSISSNIKDMSQSIPIE 404 Query 1184 DRLNEVAKNLNES--LIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCC 1241 D L +V+ LN S ++ QEL K E+Y Y WLG + + ++ C Sbjct 405 DMLLQVSHYLNNSNRYLN-QELPKLEEYDS---YWWLGGLIVCFLLTLIVTFFFLGLLCG 460 >sp|A5N4M6|SYC_CLOK5 Cysteine--tRNA ligase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) OX=431943 GN=cysS PE=3 SV=1 Length=465 Score = 35.5 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 18/76 (24%), Positives = 31/76 (41%), Gaps = 5/76 (7%) Query 1130 IGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEI-DRLNE 1188 +NN + +E LDKY + + L +SG + +N E+ D Sbjct 257 FVNINNQKMSKSLNNFFTTREILDKYEPDV----IRLFMLSGHYRTPINFSIELLDSTKS 312 Query 1189 VAKNLNESLIDLQELG 1204 + S+I+L+EL Sbjct 313 ALDRICNSIINLEELS 328 >sp|B9DY88|SYC_CLOK1 Cysteine--tRNA ligase OS=Clostridium kluyveri (strain NBRC 12016) OX=583346 GN=cysS PE=3 SV=1 Length=465 Score = 35.5 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 18/76 (24%), Positives = 31/76 (41%), Gaps = 5/76 (7%) Query 1130 IGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEI-DRLNE 1188 +NN + +E LDKY + + L +SG + +N E+ D Sbjct 257 FVNINNQKMSKSLNNFFTTREILDKYEPDV----IRLFMLSGHYRTPINFSIELLDSTKS 312 Query 1189 VAKNLNESLIDLQELG 1204 + S+I+L+EL Sbjct 313 ALDRICNSIINLEELS 328 >sp|Q09094|REC15_SCHPO Meiotic recombination protein rec15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rec15 PE=1 SV=1 Length=180 Score = 34.4 bits (77), Expect = 3.5, Method: Composition-based stats. Identities = 16/85 (19%), Positives = 41/85 (48%), Gaps = 4/85 (5%) Query 909 IGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGK----LQDVVNQNAQALNTLVK 964 + + + ++QK +NQ S + ++ +G+ + +V QN+Q + + Sbjct 15 LAMQAEDMQQHQKSQSNQIASCLAEMNTKQEVVNQTIGQLGRSISEVQQQNSQLVLQSLN 74 Query 965 QLSSNFGAISSVLNDILSRLDKVEA 989 Q++ + ++ + D SR++K+E Sbjct 75 QINMSMQQVALGIQDYASRINKLEQ 99 >sp|P10865|FUS_NDVM Fusion glycoprotein F0 OS=Newcastle disease virus (strain Miyadera/51) OX=11185 GN=F PE=3 SV=1 Length=553 Score = 35.5 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 37/98 (38%), Gaps = 13/98 (13%) Query 869 MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFN 928 ++ A++ T A + + N N+L + + A N Sbjct 113 RQRRFIGAIIGSVALGVATAAQITAA----SALIQANQN----AANILRLKESIAAT--N 162 Query 929 SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQL 966 A+ ++ D LS A A+GK+Q VN N ++L Sbjct 163 EAVHEVTDGLSQLAVAVGKMQQFVNDQ---FNNTTQEL 197 >sp|P35936|FUS_NDVD Fusion glycoprotein F0 OS=Newcastle disease virus (strain D26/76) OX=11180 GN=F PE=1 SV=1 Length=553 Score = 35.1 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 26/88 (30%), Positives = 37/88 (42%), Gaps = 10/88 (11%) Query 880 GTITSGWTFGAGAALQIPFAMQ-MAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSL 938 G I G G A QI A + N N+L + + A N A+ ++ D L Sbjct 119 GAIIGGVALGVATAAQITAASALIQANQN----AANILRLKESIAAT--NEAVHEVTDGL 172 Query 939 SSTASALGKLQDVVNQNAQALNTLVKQL 966 S A A+GK+Q VN N ++L Sbjct 173 SQLAVAVGKMQQFVNDQ---FNKTAQEL 197 >sp|Q9X1E2|MCP4_THEMA Methyl-accepting chemotaxis protein 4 OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=mcp4 PE=1 SV=1 Length=566 Score = 35.1 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 27/143 (19%), Positives = 57/143 (40%), Gaps = 22/143 (15%) Query 909 IGVTQNVLYENQ-KLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLS 967 + V+ ++ +++ LIA + N +G ++ + + K QD V + ++ L L +QL Sbjct 230 LSVSVDIKSKDEFGLIAQKLNETVGNLRKMVQE----IDKSQDEVERVSEELFALSQQLR 285 Query 968 SNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAAT 1027 S L +I D + EVQ + + + + E+ A++ + Sbjct 286 -------SALEEIARASDTISKEVQ----------NASASIEEVTSGSEEVSANSQNISK 328 Query 1028 KMSECVLGQSKRVDFCGKGYHLM 1050 + E DF G ++ Sbjct 329 LIQEISENADNIADFARNGQRVL 351 >sp|F1QC17|EMI1A_DANRE EMILIN-1-A OS=Danio rerio OX=7955 GN=emilin1a PE=3 SV=1 Length=1014 Score = 35.1 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 17/109 (16%), Positives = 43/109 (39%), Gaps = 9/109 (8%) Query 918 ENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVL 977 +NQ + + + IQ L+ + D + + L +++ +N +++ Sbjct 619 DNQNTVTRKLGKDLKSIQGELTGILQIFNSINDTL----KGLRNTIQKHGNNITDLNTSK 674 Query 978 NDILSRLDKVEAEV---QIDRLITGRLQSLQTYVTQQLIRAAEIRASAN 1023 I LD++ ++ ++D G S+ ++ + + E R S Sbjct 675 GKIYLELDQLYDDLNKHKVDS--KGHFDSISSFNSNLMTEMGECRLSRE 721 >sp|Q6GN42|CTL4_XENLA Choline transporter-like protein 4 OS=Xenopus laevis OX=8355 GN=slc44a4 PE=2 SV=1 Length=707 Score = 35.1 bits (79), Expect = 5.4, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 6/125 (5%) Query 1116 TTDNTFVSGNCD--VVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGIN 1173 + + ++ C + + TV EL F N P +L S Sbjct 125 SPASVYIQEYCQPSINLTTTPLTVAQIAAKELCPVFLVPSTSFFNRCFPGSNLTFPSDFT 184 Query 1174 ASVVNIQKEIDRLNEVAKNLNESLIDLQELGK--YEQYIK-WPWYIWLGFIAGLIAIVMV 1230 + + + ++E A + +S + Q +GK +E + K WPW I IA +++++ + Sbjct 185 INGLTANQSRANISEAASQILDSF-NFQNVGKKIFEDFAKSWPWIITALVIAMVVSLLFL 243 Query 1231 TIMLC 1235 ++ Sbjct 244 ILLRF 248 >sp|P33612|FUS_NDVH3 Fusion glycoprotein F0 OS=Newcastle disease virus (strain Her/33) OX=11187 GN=F PE=3 SV=1 Length=553 Score = 35.1 bits (79), Expect = 5.4, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 37/98 (38%), Gaps = 13/98 (13%) Query 869 MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFN 928 ++ A++ T A + + N N+L + + A N Sbjct 113 RQRRFIGAIIGSVALGVATAAQITAA----SALIQANQN----AANILRLKESIAAT--N 162 Query 929 SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQL 966 A+ ++ D LS A A+GK+Q VN N ++L Sbjct 163 EAVHEVTDGLSQIAVAVGKMQQFVNDQ---FNNTAQEL 197 >sp|P33614|FUS_NDVL Fusion glycoprotein F0 OS=Newcastle disease virus (strain Chicken/United States/LaSota/46) OX=11184 GN=F PE=3 SV=1 Length=553 Score = 34.7 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 10/88 (11%) Query 880 GTITSGWTFGAGAALQIPFAMQ-MAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSL 938 G I G G QI A + + N N+L + + A N A+ ++ D L Sbjct 119 GAIIGGVALGVATPAQITAAAALIQAKQN----AANILRLKESIAAT--NEAVHEVTDGL 172 Query 939 SSTASALGKLQDVVNQNAQALNTLVKQL 966 S A A+GK+Q VN N ++L Sbjct 173 SQLAVAVGKMQQFVNDQ---FNKTAQEL 197 >sp|P33615|FUS_NDVQ Fusion glycoprotein F0 OS=Newcastle disease virus (strain Queensland/66) OX=11186 GN=F PE=3 SV=1 Length=553 Score = 34.7 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 10/88 (11%) Query 880 GTITSGWTFGAGAALQIPFAMQ-MAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSL 938 G I G G A QI A + N N+L + + A N A+ ++ + L Sbjct 119 GAIIGGVALGVATAAQITAASALIQANQN----AANILLLKESIAAT--NEAVHEVTNGL 172 Query 939 SSTASALGKLQDVVNQNAQALNTLVKQL 966 S A A+GK+Q VN N ++L Sbjct 173 SQLAVAVGKMQQFVNDQ---FNKTAQEL 197 >sp|P14623|FUS_NDVI Fusion glycoprotein F0 OS=Newcastle disease virus (strain Italien/45) OX=11182 GN=F PE=2 SV=1 Length=553 Score = 34.7 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 37/98 (38%), Gaps = 13/98 (13%) Query 869 MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFN 928 ++ A++ T A + + N N+L + + A N Sbjct 113 RQRRFIGAIIGSVALGVATPAQITAA----SALIQANQN----AANILRLKESIAAT--N 162 Query 929 SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQL 966 A+ ++ D LS A A+GK+Q VN N +QL Sbjct 163 EAVHEVTDGLSQLAVAVGKMQQFVNDQ---FNNTAQQL 197 >sp|P26628|FUS_NDVT Fusion glycoprotein F0 OS=Newcastle disease virus (strain Texas) OX=11188 GN=F PE=3 SV=1 Length=553 Score = 34.4 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 37/98 (38%), Gaps = 13/98 (13%) Query 869 MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFN 928 ++ A++ T A + + N N+L + + A N Sbjct 113 RQRRFIGAIIGSVALGVATAAQITAA----SALIQANQN----AANILRLKESIAAT--N 162 Query 929 SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQL 966 A+ ++ D LS A A+GK+Q VN N ++L Sbjct 163 EAVHEVTDGLSQLAVAVGKMQQFVNDQ---FNNTAQEL 197 Lambda K H a alpha 0.318 0.126 0.346 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0386 0.140 1.90 42.6 43.6 Effective search space used: 151247772180 Database: uniprot_sprot.fasta Posted date: Feb 9, 2024 7:20 PM Number of letters in database: 206,533,160 Number of sequences in database: 570,830 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40