PSIBLAST 2.11.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Stephen F.
Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005)
"Protein database searches using compositionally adjusted
substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: uniprot_sprot.fasta
           573,661 sequences; 207,922,125 total letters

Results from round 1


Query= YP_009725307.1 RNA-dependent RNA polymerase [Severe acute
respiratory syndrome coronavirus 2]

Length=932
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute re...  1969    0.0   
sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute res...  1914    0.0   
sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus...  1911    0.0   
sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus...  1906    0.0   
sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus...  1904    0.0   
sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus...  1451    0.0   
sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus...  1423    0.0   
sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East res...  1413    0.0   
sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus...  1411    0.0   
sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus...  1410    0.0   
sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavir...  1308    0.0   
sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavi...  1306    0.0   
sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavir...  1300    0.0   
sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavir...  1299    0.0   
sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavir...  1299    0.0   
sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavir...  1296    0.0   
sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavi...  1294    0.0   
sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavi...  1294    0.0   
sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavi...  1292    0.0   
sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavir...  1290    0.0   
sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavir...  1287    0.0   
sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectiou...  1186    0.0   
sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious...  1186    0.0   
sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus...  1184    0.0   
sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious...  1182    0.0   
sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemi...  1174    0.0   
sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavir...  1163    0.0   
sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavir...  1151    0.0   
sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmi...  1142    0.0   
sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavir...  1128    0.0   
sp|Q9WQ77|R1AB_CVRSD Replicase polyprotein 1ab (Fragment) OS=Rat ...  483     2e-163
sp|Q9WQ76|R1AB_CVTMI Replicase polyprotein 1ab (Fragment) OS=Turk...  444     2e-148
sp|P0C6V7|R1AB_BEV Replicase polyprotein 1ab OS=Berne virus OX=11...  131     2e-29 
sp|P0C6V8|R1AB_BRV1 Replicase polyprotein 1ab OS=Breda virus 1 OX...  117     5e-25 
sp|F8RL29|R1AB_AMV79 Replicase polyprotein 1ab OS=Alphamesoniviru...  105     1e-21 
sp|Q008X6|R1AB_WBV24 Replicase polyprotein 1ab OS=White bream vir...  100     6e-20 
sp|Q68772|RPOA_SHFV Replicase polyprotein 1ab OS=Simian hemorrhag...  49.3    2e-04 
sp|Q9WJB2|RPOA_PRRSR Replicase polyprotein 1ab OS=Porcine reprodu...  47.4    8e-04 
sp|A6YQT5|RPOA_PRRSV Replicase polyprotein 1ab OS=Porcine reprodu...  46.6    0.001 
sp|Q8B912|RPOA_PRRSB Replicase polyprotein 1ab OS=Porcine reprodu...  46.2    0.002 
sp|Q9YN02|RPOA_PRRS1 Replicase polyprotein 1ab OS=Porcine reprodu...  46.2    0.002 
sp|P18479|POLG_ZYMVC Genome polyprotein OS=Zucchini yellow mosaic...  38.9    0.30  
sp|Q04561|RPOA_PRRSL Replicase polyprotein 1ab OS=Porcine reprodu...  38.5    0.40  
sp|Q06502|RPOA_LDVC Replicase polyprotein 1ab OS=Lactate dehydrog...  38.1    0.48  
sp|C4LCH1|UXUA_TOLAT Mannonate dehydratase OS=Tolumonas auensis (...  37.4    0.57  
sp|A0MD28|RPOA_PRRSS Replicase polyprotein 1ab OS=Porcine reprodu...  38.1    0.60  
sp|P18478|POLG_WMV2U Genome polyprotein (Fragment) OS=Watermelon ...  37.7    0.66  
sp|Q83017|RPOA_LDVP Replicase polyprotein 1ab OS=Lactate dehydrog...  37.7    0.66  
sp|Q89330|POLG_ZYMVR Genome polyprotein OS=Zucchini yellow mosaic...  36.6    1.4   
sp|B1KEK5|PYRC_SHEWM Dihydroorotase OS=Shewanella woodyi (strain ...  35.8    1.6   
sp|Q492K3|HISX_BLOPB Histidinol dehydrogenase OS=Blochmanniella p...  35.4    2.4   
sp|P19811|RPOA_EAVBU Replicase polyprotein 1ab OS=Equine arteriti...  35.0    4.3   
sp|O36979|POLG_ZYMVS Genome polyprotein OS=Zucchini yellow mosaic...  34.7    6.0   
sp|Q0CRF3|ATG5_ASPTN Autophagy protein 5 OS=Aspergillus terreus (...  33.5    9.6   


>sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute 
respiratory syndrome coronavirus 2 OX=2697049 GN=rep PE=1 
SV=1
Length=7096

 Score = 1969 bits (5102),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 932/932 (100%), Positives = 932/932 (100%), Gaps = 0/932 (0%)

Query  1     SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD  60
             SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD
Sbjct  4393  SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD  4452

Query  61    EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT  120
             EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT
Sbjct  4453  EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT  4512

Query  121   KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE  180
             KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE
Sbjct  4513  KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE  4572

Query  181   RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL  240
             RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL
Sbjct  4573  RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL  4632

Query  241   LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN  300
             LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN
Sbjct  4633  LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN  4692

Query  301   CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN  360
             CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN
Sbjct  4693  CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN  4752

Query  361   LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY  420
             LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY
Sbjct  4753  LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY  4812

Query  421   DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF  480
             DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF
Sbjct  4813  DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF  4872

Query  481   DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT  540
             DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT
Sbjct  4873  DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT  4932

Query  541   QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN  600
             QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN
Sbjct  4933  QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN  4992

Query  601   MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA  660
             MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA
Sbjct  4993  MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA  5052

Query  661   QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV  720
             QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV
Sbjct  5053  QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV  5112

Query  721   RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK  780
             RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK
Sbjct  5113  RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK  5172

Query  781   NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA  840
             NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA
Sbjct  5173  NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA  5232

Query  841   GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML  900
             GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML
Sbjct  5233  GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML  5292

Query  901   DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ
Sbjct  5293  DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  5324


>sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute 
respiratory syndrome coronavirus OX=694009 GN=rep PE=1 SV=1
Length=7073

 Score = 1914 bits (4957),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 898/932 (96%), Positives = 916/932 (98%), Gaps = 0/932 (0%)

Query  1     SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD  60
             SADA +FLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYN+KVAGFAKFLKTNCCRFQEKD
Sbjct  4370  SADASTFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNEKVAGFAKFLKTNCCRFQEKD  4429

Query  61    EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT  120
             E+ NL+DSYFVVKRHT SNYQHEETIYNL+KDCPAVA HDFFKFR+DGDMVPHISRQRLT
Sbjct  4430  EEGNLLDSYFVVKRHTMSNYQHEETIYNLVKDCPAVAVHDFFKFRVDGDMVPHISRQRLT  4489

Query  121   KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE  180
             KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE
Sbjct  4490  KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE  4549

Query  181   RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL  240
             RVRQ+LLKTVQFCDAMR+AGIVGVLTLDNQDLNGNWYDFGDF+Q  PG GVP+VDSYYSL
Sbjct  4550  RVRQSLLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSL  4609

Query  241   LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN  300
             LMPILTLTRAL AESH+D DL KP IKWDLLKYDFTEERL LFDRYFKYWDQTYHPNC+N
Sbjct  4610  LMPILTLTRALAAESHMDADLAKPLIKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCIN  4669

Query  301   CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN  360
             CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN
Sbjct  4670  CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN  4729

Query  361   LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY  420
             LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY
Sbjct  4730  LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY  4789

Query  421   DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF  480
             DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF
Sbjct  4790  DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF  4849

Query  481   DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT  540
             DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT
Sbjct  4850  DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT  4909

Query  541   QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN  600
             QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN
Sbjct  4910  QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN  4969

Query  601   MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA  660
             MLKTVYSDVE PHLMGWDYPKCDRAMPNMLRIMASLVLARKH TCC+LSHRFYRLANECA
Sbjct  4970  MLKTVYSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHNTCCNLSHRFYRLANECA  5029

Query  661   QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV  720
             QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV
Sbjct  5030  QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV  5089

Query  721   RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK  780
             RNLQHRLYECLYRNRDVD +FV+EFYAYLRKHFSMMILSDDAVVC+NS YA+QGLVASIK
Sbjct  5090  RNLQHRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIK  5149

Query  781   NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA  840
             NFK+VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA
Sbjct  5150  NFKAVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA  5209

Query  841   GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML  900
             GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML
Sbjct  5210  GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML  5269

Query  901   DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ
Sbjct  5270  DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  5301


>sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus 
Rp3/2004 OX=349344 GN=rep PE=3 SV=1
Length=7071

 Score = 1911 bits (4951),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 897/932 (96%), Positives = 914/932 (98%), Gaps = 0/932 (0%)

Query  1     SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD  60
             SADA +FLNRVCGVSAARLTPCGTG STDVVYRAFDIYN+KVAGFAKFLKTNCCRFQEKD
Sbjct  4368  SADASTFLNRVCGVSAARLTPCGTGISTDVVYRAFDIYNEKVAGFAKFLKTNCCRFQEKD  4427

Query  61    EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT  120
             E+ NL+DSYFVVKRHT SNYQHEETIYNL+KDCPAVA HDFFKFR+DGDMVPHISRQRLT
Sbjct  4428  EEGNLLDSYFVVKRHTMSNYQHEETIYNLVKDCPAVAVHDFFKFRVDGDMVPHISRQRLT  4487

Query  121   KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE  180
             KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE
Sbjct  4488  KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE  4547

Query  181   RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL  240
             RVRQALLKTVQFCDAMR+AGIVGVLTLDNQDLNGNWYDFGDF+Q  PG GVP+VDSYYSL
Sbjct  4548  RVRQALLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSL  4607

Query  241   LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN  300
             LMPILTLTRAL AESH+D DL KP IKWDLLKYDFT ERL LFDRYFKYWDQTYHPNC+N
Sbjct  4608  LMPILTLTRALAAESHMDADLAKPLIKWDLLKYDFTAERLCLFDRYFKYWDQTYHPNCIN  4667

Query  301   CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN  360
             CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN
Sbjct  4668  CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN  4727

Query  361   LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY  420
             LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY
Sbjct  4728  LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY  4787

Query  421   DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF  480
             DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF
Sbjct  4788  DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF  4847

Query  481   DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT  540
             DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT
Sbjct  4848  DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT  4907

Query  541   QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN  600
             QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN
Sbjct  4908  QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN  4967

Query  601   MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA  660
             MLKTVYSDVE PHLMGWDYPKCDRAMPNMLRIMASLVLARKH+TCC+LSHRFYRLANECA
Sbjct  4968  MLKTVYSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHSTCCNLSHRFYRLANECA  5027

Query  661   QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV  720
             QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV
Sbjct  5028  QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV  5087

Query  721   RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK  780
             RNLQHRLYECLYRNRDVD +FV EFYAYLRKHFSMMILSDDAVVC+NS YA+QGLVASIK
Sbjct  5088  RNLQHRLYECLYRNRDVDHEFVGEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIK  5147

Query  781   NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA  840
             NFK+VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA
Sbjct  5148  NFKAVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA  5207

Query  841   GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML  900
             GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML
Sbjct  5208  GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML  5267

Query  901   DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ
Sbjct  5268  DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  5299


>sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus 
279/2005 OX=389167 GN=rep PE=3 SV=1
Length=7079

 Score = 1906 bits (4937),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 894/932 (96%), Positives = 915/932 (98%), Gaps = 0/932 (0%)

Query  1     SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD  60
             SADA +FLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYN++VAGFAKFLKTNCCRFQEKD
Sbjct  4376  SADASTFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNERVAGFAKFLKTNCCRFQEKD  4435

Query  61    EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT  120
             E+ NL+DSYFVVKRHT SNYQHEETIYNL+K+CPAVA HDFFKFR+DGDMVPHISRQRLT
Sbjct  4436  EEGNLLDSYFVVKRHTMSNYQHEETIYNLVKECPAVAVHDFFKFRVDGDMVPHISRQRLT  4495

Query  121   KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE  180
             KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE
Sbjct  4496  KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE  4555

Query  181   RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL  240
             RVRQALLKTVQFCDAMR+AGIVGVLTLDNQDLNGNWYDFGDF+Q  PG GVP+VDSYYSL
Sbjct  4556  RVRQALLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSL  4615

Query  241   LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN  300
             LMPILTLT+AL AESH+D DL KP IKWDLLKYDFTEERL LFDRYFKYWDQTYHPNC+N
Sbjct  4616  LMPILTLTKALAAESHMDADLAKPLIKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCIN  4675

Query  301   CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN  360
             CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN
Sbjct  4676  CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN  4735

Query  361   LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY  420
             LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY
Sbjct  4736  LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY  4795

Query  421   DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF  480
             DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF
Sbjct  4796  DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF  4855

Query  481   DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT  540
             DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQD LFAYTKRNVIPTIT
Sbjct  4856  DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDVLFAYTKRNVIPTIT  4915

Query  541   QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN  600
             QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN
Sbjct  4916  QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN  4975

Query  601   MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA  660
             MLKTVYSDVE PHLMGWDYPKCDRAMPNMLRIMASLVLARKH+TCC+LSHRFYRLANECA
Sbjct  4976  MLKTVYSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHSTCCNLSHRFYRLANECA  5035

Query  661   QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV  720
             QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV
Sbjct  5036  QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV  5095

Query  721   RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK  780
             RNLQHRLYECLYRNRDVD +FV+EFYAYLRKHFSMMILSDDAVVC+NS YA+QGLVASIK
Sbjct  5096  RNLQHRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIK  5155

Query  781   NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA  840
             NFK+V YYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA
Sbjct  5156  NFKAVHYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA  5215

Query  841   GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML  900
             GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML
Sbjct  5216  GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML  5275

Query  901   DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ
Sbjct  5276  DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  5307


>sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus 
HKU3 OX=442736 GN=rep PE=3 SV=1
Length=7067

 Score = 1904 bits (4933),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 891/932 (96%), Positives = 918/932 (98%), Gaps = 0/932 (0%)

Query  1     SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD  60
             SADA +FLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYN+KVAGFAKFLKTNCCRFQEKD
Sbjct  4364  SADASTFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNEKVAGFAKFLKTNCCRFQEKD  4423

Query  61    EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT  120
             E+ NL+DSYFVVKRHT SNYQHEETIYNL+K+CPAVA HDFFKFR+DGDMVPHISRQRLT
Sbjct  4424  EEGNLLDSYFVVKRHTMSNYQHEETIYNLIKECPAVAVHDFFKFRVDGDMVPHISRQRLT  4483

Query  121   KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE  180
             KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDD+YFNKKDWYDFVENPD+LRVYANLGE
Sbjct  4484  KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDNYFNKKDWYDFVENPDVLRVYANLGE  4543

Query  181   RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL  240
             RVR+ALLKTVQFCDAMR+AGIVGVLTLDNQDLNGNWYDFGDF+Q  PG GVP+VDSYYSL
Sbjct  4544  RVRRALLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSL  4603

Query  241   LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN  300
             LMPILTLT+AL AESH+D DL KP +KWDLLKYDFTEERL LFDRYFKYWDQTYHPNC+N
Sbjct  4604  LMPILTLTKALAAESHMDADLAKPLVKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCIN  4663

Query  301   CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN  360
             CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN
Sbjct  4664  CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN  4723

Query  361   LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY  420
             LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY
Sbjct  4724  LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY  4783

Query  421   DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF  480
             DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF
Sbjct  4784  DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF  4843

Query  481   DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT  540
             DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT
Sbjct  4844  DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT  4903

Query  541   QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN  600
             QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN
Sbjct  4904  QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN  4963

Query  601   MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA  660
             MLKTVYSDVE+PHLMGWDYPKCDRAMPNMLRIMASL+LARKH+TCC+LSHRFYRLANECA
Sbjct  4964  MLKTVYSDVESPHLMGWDYPKCDRAMPNMLRIMASLILARKHSTCCNLSHRFYRLANECA  5023

Query  661   QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV  720
             QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV
Sbjct  5024  QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV  5083

Query  721   RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK  780
             RNLQHRLYECLYRNRDVD +FV+EFYAYLRKHFSMMILSDDAVVC+NS YA+QGLVASIK
Sbjct  5084  RNLQHRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIK  5143

Query  781   NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA  840
             NFK+VLYYQNNVFMSEAKCWTETDLT+GPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA
Sbjct  5144  NFKAVLYYQNNVFMSEAKCWTETDLTRGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA  5203

Query  841   GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML  900
             GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML
Sbjct  5204  GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML  5263

Query  901   DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ
Sbjct  5264  DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  5295


>sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus 
HKU9 OX=694006 GN=rep PE=1 SV=1
Length=6930

 Score = 1451 bits (3755),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 676/932 (73%), Positives = 770/932 (83%), Gaps = 1/932 (0%)

Query  2     ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD  60
             A  + FLNRV G S  ARL P G+G   D+V RAFDI N KVAGF   LK NCCR+QE D
Sbjct  4234  ARDECFLNRVRGTSGVARLVPLGSGVQPDIVLRAFDICNTKVAGFGLHLKNNCCRYQELD  4293

Query  61    EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT  120
              D   +DSYFVVKRHT SNY  E+  Y  LKDC  VA+HDFFKF I+G M PH+SR+RLT
Sbjct  4294  ADGTQLDSYFVVKRHTESNYLLEQRCYEKLKDCGVVARHDFFKFNIEGVMTPHVSRERLT  4353

Query  121   KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE  180
             KYTMADLVY+LRHFD  NCDTLKEILV   CC  DYF++KDWYD VENPDI+RVY NLGE
Sbjct  4354  KYTMADLVYSLRHFDNNNCDTLKEILVLRGCCTADYFDRKDWYDPVENPDIIRVYHNLGE  4413

Query  181   RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL  240
              VR+A+L  V+  D+M   G++GVLTLDNQDLNG WYDFGDFI+   G+GV V+D+YYSL
Sbjct  4414  TVRKAVLSAVKMADSMVEQGLIGVLTLDNQDLNGQWYDFGDFIEGPAGAGVAVMDTYYSL  4473

Query  241   LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN  300
              MP+ T+T  L AE HVD D +KP   WD+ KYD+T+ +  LF +YFKYWD  YHPNCV 
Sbjct  4474  AMPVYTMTNMLAAECHVDGDFSKPKRVWDICKYDYTQFKYSLFSKYFKYWDMQYHPNCVA  4533

Query  301   CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN  360
             C DDRCILHCANFN+LFS V P TSFGPLV+KI+VDGVPFVVSTGYH+RELGVV NQD+ 
Sbjct  4534  CADDRCILHCANFNILFSMVLPNTSFGPLVQKIYVDGVPFVVSTGYHYRELGVVMNQDIR  4593

Query  361   LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY  420
              H+ RLS +ELLVYAADPAMH A+ N L DKRT C SVAA+T  V FQTVKPG FN+DFY
Sbjct  4594  QHAQRLSLRELLVYAADPAMHVAASNALADKRTVCMSVAAMTTGVTFQTVKPGQFNEDFY  4653

Query  421   DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF  480
             +FAV  GFFKEGS++  KHFF+AQDGNAAISDYDYYRYNLPTMCDI+QLLF +EVVDKYF
Sbjct  4654  NFAVKCGFFKEGSTISFKHFFYAQDGNAAISDYDYYRYNLPTMCDIKQLLFSLEVVDKYF  4713

Query  481   DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT  540
             DCYDGGC+ A+QV+V N DKSAGFPFNK+GKARLYY+S+SY DQD LFAYTKRNV+PTIT
Sbjct  4714  DCYDGGCLQASQVVVANYDKSAGFPFNKFGKARLYYESLSYADQDELFAYTKRNVLPTIT  4773

Query  541   QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN  600
             QMNLKYAISAKNRARTVAGVSI STMTNRQFHQK+LKSIAA RGA+VVIGT+KFYGGW+ 
Sbjct  4774  QMNLKYAISAKNRARTVAGVSIASTMTNRQFHQKMLKSIAAARGASVVIGTTKFYGGWNR  4833

Query  601   MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA  660
             ML+T+   VENPHLMGWDYPKCDRAMPN+LRI ASL+LARKH TCC+ S RFYRLANECA
Sbjct  4834  MLRTLCEGVENPHLMGWDYPKCDRAMPNLLRIFASLILARKHATCCNASERFYRLANECA  4893

Query  661   QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV  720
             QVLSEMV+CGG  YVKPGGTSSGD+TTAYANSVFNICQAV+AN+N  LS DGNKI   YV
Sbjct  4894  QVLSEMVLCGGGFYVKPGGTSSGDSTTAYANSVFNICQAVSANLNTFLSIDGNKIYTTYV  4953

Query  721   RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK  780
             + LQ RLY  +YR+  VD + V ++Y YLRKHFSMMILSDD VVC+N+ YA +G VA I+
Sbjct  4954  QELQRRLYLGIYRSNTVDNELVLDYYNYLRKHFSMMILSDDGVVCYNADYAQKGYVADIQ  5013

Query  781   NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA  840
              FK +LY+QNNVFMSE+KCW E D+TKGPHEFCSQHTMLV    + VYLPYPDPSRILGA
Sbjct  5014  GFKELLYFQNNVFMSESKCWVEPDITKGPHEFCSQHTMLVDMKGEQVYLPYPDPSRILGA  5073

Query  841   GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML  900
             GCFVDD++KTDGTLM+ER+VSLAIDAYPLTKHP+ EY +VF  YLQYI+KLH+ELTGH+L
Sbjct  5074  GCFVDDLLKTDGTLMMERYVSLAIDAYPLTKHPDPEYQNVFWCYLQYIKKLHEELTGHLL  5133

Query  901   DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             D YSVML +DN S+YWE EFYE MY     LQ
Sbjct  5134  DTYSVMLASDNASKYWEVEFYENMYMESATLQ  5165


>sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus 
HKU5 OX=694008 GN=rep PE=3 SV=1
Length=7182

 Score = 1423 bits (3684),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 659/931 (71%), Positives = 776/931 (83%), Gaps = 3/931 (0%)

Query  5     QSFLNRVCG-VSAARLTPCGTGTSTDVVYRAFDI--YNDKVAGFAKFLKTNCCRFQEKDE  61
              +FLNRV G +  AR+ PC +G +TDVV+RAFDI  Y  KVAG  K+ KTN CRF E D+
Sbjct  4471  SNFLNRVRGSIVNARIEPCASGLTTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVEVDD  4530

Query  62    DDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTK  121
             + + +DS+FVVKRHT  NY+ E+  Y+L+KDC AVA HDFF F +D    PHI RQRLT+
Sbjct  4531  EGHRLDSFFVVKRHTMENYELEKRCYDLVKDCDAVAVHDFFIFDVDKVKTPHIVRQRLTE  4590

Query  122   YTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGER  181
             YTM DLVYALRHFD+ NC+ LK ILV Y CCD  YF+ K W+DFVENP+++ VY  LGER
Sbjct  4591  YTMMDLVYALRHFDQNNCEVLKSILVKYGCCDASYFDNKLWFDFVENPNVISVYHKLGER  4650

Query  182   VRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLL  241
             +RQA+L TV+FCD M  +G+VGVLTLDNQDLNG WYDFGDF+ T PG+GV +VDSYYS L
Sbjct  4651  IRQAVLNTVKFCDQMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYYSYL  4710

Query  242   MPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNC  301
             MP+L++T  L AE+H D DLTKP I+W LL+YD+T+ ++ LF++YFK WDQ YHPNCVNC
Sbjct  4711  MPVLSMTNCLAAETHRDCDLTKPLIEWPLLEYDYTDYKIGLFEKYFKXWDQQYHPNCVNC  4770

Query  302   LDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNL  361
              DDRC+LHCANFNVLFS   P TSFGP+VRKIFVDGVPFV+S GYH++ELG+V N DV+L
Sbjct  4771  TDDRCVLHCANFNVLFSMTLPGTSFGPIVRKIFVDGVPFVISCGYHYKELGLVMNMDVSL  4830

Query  362   HSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYD  421
             H  RLS KEL++YAADPAMH AS + L D RT CFSVAALT  + FQTV+PGNFNKDFYD
Sbjct  4831  HRHRLSLKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKDFYD  4890

Query  422   FAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFD  481
             F VSKGFFKEGSSV L+HFFFAQDG+AAI+DY YY YNLPTMCDI+Q+LF +EVVD+YF+
Sbjct  4891  FVVSKGFFKEGSSVTLRHFFFAQDGHAAITDYSYYAYNLPTMCDIKQMLFCMEVVDRYFE  4950

Query  482   CYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQ  541
              YDGGC+NA++VIVNNLDKSAG PFNK+GKAR+YY+S+SY++QD LFA TKRNV+PTITQ
Sbjct  4951  IYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESLSYQEQDELFAMTKRNVLPTITQ  5010

Query  542   MNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNM  601
             MNLKYAISAKNRARTVAGVSI STMTNRQ+HQK+LKS+AATRG+T VIGT+KFYGGW  M
Sbjct  5011  MNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGSTCVIGTTKFYGGWDFM  5070

Query  602   LKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQ  661
             LKT+Y DV+NPHLMGWDYPKCDRAMPNM RI ASL+LARKH+TCC+ + RFYRLANECAQ
Sbjct  5071  LKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHSTCCTNTDRFYRLANECAQ  5130

Query  662   VLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVR  721
             VLSE V+CGG  YVKPGGTSSGDATTAYANSVFNI QA TANV+AL+  +GN I D+ V+
Sbjct  5131  VLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNTIVDEEVK  5190

Query  722   NLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKN  781
             ++Q  LY  +YR    D  FV+ +YA+L KHFSMMILSDD VVC+NS YA++G +ASI+N
Sbjct  5191  DMQFELYVNVYRKSQPDPKFVDRYYAFLNKHFSMMILSDDGVVCYNSDYATKGYIASIQN  5250

Query  782   FKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAG  841
             FK  LYYQNNVFMSEAKCW ETDL KGPHEFCSQHT+ +K GDD  +LPYPDPSRIL AG
Sbjct  5251  FKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLFIKDGDDGYFLPYPDPSRILSAG  5310

Query  842   CFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLD  901
             CFVDDIVKTDGTLM+ERFVSLAIDAYPLTKH + EY +VF +YLQYI KL+ +LTGHMLD
Sbjct  5311  CFVDDIVKTDGTLMVERFVSLAIDAYPLTKHDDPEYQNVFWVYLQYIEKLYKDLTGHMLD  5370

Query  902   MYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
              YSVML  DN++++WE  FY  +YT  T LQ
Sbjct  5371  SYSVMLCGDNSAKFWEESFYRDLYTAPTTLQ  5401


>sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East 
respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012) 
OX=1263720 GN=rep PE=1 SV=1
Length=7078

 Score = 1413 bits (3657),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 663/931 (71%), Positives = 771/931 (83%), Gaps = 4/931 (0%)

Query  5     QSFLNRVCG-VSAARLTPCGTGTSTDVVYRAFDI--YNDKVAGFAKFLKTNCCRFQEKDE  61
              +FL RV G +  AR+ PC +G STDVV+RAFDI  Y  KVAG  K+ KTN CRF E D+
Sbjct  4381  SNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVELDD  4440

Query  62    DDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTK  121
               + +DSYFVVKRHT  NY+ E+  Y+LL+DC AVA HDFF F +D    PHI RQRLT+
Sbjct  4441  QGHHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQRLTE  4500

Query  122   YTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGER  181
             YTM DLVYALRHFD+ N + LK ILV Y CCD  YF  K W+DFVENP ++ VY  LGER
Sbjct  4501  YTMMDLVYALRHFDQ-NSEVLKAILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKLGER  4559

Query  182   VRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLL  241
             VRQA+L TV+FCD M  AG+VGVLTLDNQDLNG WYDFGDF+ T PGSGV +VDSYYS L
Sbjct  4560  VRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYYSYL  4619

Query  242   MPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNC  301
             MP+L++T  L AE+H D D  KP I+W L +YDFT+ +++LF++YFKYWDQTYH NCVNC
Sbjct  4620  MPVLSMTDCLAAETHRDCDFNKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHANCVNC  4679

Query  302   LDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNL  361
              DDRC+LHCANFNVLF+   P T FGP+VRKIFVDGVPFVVS GYH++ELG+V N DV+L
Sbjct  4680  TDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMNMDVSL  4739

Query  362   HSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYD  421
             H  RLS KEL++YAADPAMH AS N  LD RT+CFSVAALT  + FQTV+PGNFN+DFYD
Sbjct  4740  HRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFNQDFYD  4799

Query  422   FAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFD  481
             F VSKGFFKEGSSV LKHFFFAQDGNAAI+DY+YY YNLPTMCDI+Q+LF +EVV+KYF+
Sbjct  4800  FVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVVNKYFE  4859

Query  482   CYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQ  541
              YDGGC+NA++V+VNNLDKSAG PFNK+GKAR+YY+SMSY++QD LFA TKRNVIPT+TQ
Sbjct  4860  IYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVIPTMTQ  4919

Query  542   MNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNM  601
             MNLKYAISAKNRARTVAGVSI STMTNRQ+HQK+LKS+AATRGAT VIGT+KFYGGW  M
Sbjct  4920  MNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGWDFM  4979

Query  602   LKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQ  661
             LKT+Y DV+NPHLMGWDYPKCDRAMPNM RI ASL+LARKH TCC+   RFYRLANECAQ
Sbjct  4980  LKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLANECAQ  5039

Query  662   VLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVR  721
             VLSE V+CGG  YVKPGGTSSGDATTAYANSVFNI QA TANV+AL+  +GNKI DK V+
Sbjct  5040  VLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIVDKEVK  5099

Query  722   NLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKN  781
             ++Q  LY  +YR+   D  FV+++YA+L KHFSMMILSDD VVC+NS YA++G +A I+N
Sbjct  5100  DMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYIAGIQN  5159

Query  782   FKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAG  841
             FK  LYYQNNVFMSEAKCW ETDL KGPHEFCSQHT+ +K GDD  +LPYPDPSRIL AG
Sbjct  5160  FKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRILSAG  5219

Query  842   CFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLD  901
             CFVDDIVKTDGTLM+ERFVSLAIDAYPLTKH + EY +VF +YLQYI KL+ +LTGHMLD
Sbjct  5220  CFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLTGHMLD  5279

Query  902   MYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
              YSVML  DN++++WE  FY  +Y+  T LQ
Sbjct  5280  SYSVMLCGDNSAKFWEEAFYRDLYSSPTTLQ  5310


>sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus 
HKU4 OX=694007 GN=rep PE=1 SV=1
Length=7119

 Score = 1411 bits (3653),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 660/930 (71%), Positives = 776/930 (83%), Gaps = 3/930 (0%)

Query  6     SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDK--VAGFAKFLKTNCCRFQEKDED  62
             +FLNRV G S  ARL PC +G +TDVVYRAFDI N K  VAG  K+ KTN CRF + D++
Sbjct  4425  NFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQVDDE  4484

Query  63    DNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKY  122
              + +DSYF+VKRHT SNY+ E+  Y+LLKDC AVA HDFF F +D    PHI RQ LT+Y
Sbjct  4485  GHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQSLTEY  4544

Query  123   TMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERV  182
             TM DLVYALRHFD+ NC+ LK ILV Y CC+  YF+ K W+DFVENP ++ VY  LGER+
Sbjct  4545  TMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKLGERI  4604

Query  183   RQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLM  242
             RQA+L TV+ CD M  +G+VGVLTLDNQDLNG WYDFGDF+ T PG+GV +VDSYYS LM
Sbjct  4605  RQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYYSYLM  4664

Query  243   PILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCL  302
             P+L++T  L AE+H D D  KP I+W LL+YD+T+ ++ LF++YFKYWDQTYHPNCVNC 
Sbjct  4665  PVLSMTNCLAAETHKDCDFNKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQTYHPNCVNCS  4724

Query  303   DDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLH  362
             DDRCILHCANFNVLFS V P TSFGP+VRKIFVDGVPF+VS GYH++ELG+V N D N+H
Sbjct  4725  DDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNMDFNIH  4784

Query  363   SSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDF  422
               RL+ KEL++YAADPAMH AS + L D RT CFSVAALT  + FQTV+PGNFNKDFYDF
Sbjct  4785  RHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKDFYDF  4844

Query  423   AVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDC  482
              VS+GFFKEGSSV LKHFFFAQDG+AAI+DY YY YNLPTM DI+Q+LF +EVVDKYFD 
Sbjct  4845  VVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVDKYFDI  4904

Query  483   YDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQM  542
             YDGGC+NA++VIVNNLDKSAG PFNK+GKAR+YY+SMSY++QD LFA TKRNV+PTITQM
Sbjct  4905  YDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLPTITQM  4964

Query  543   NLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML  602
             NLKYAISAKNRARTVAGVSI STMTNRQ+HQK+LKS+AATRGAT VIGT+KFYGGW  ML
Sbjct  4965  NLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGWDFML  5024

Query  603   KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQV  662
             KT+Y DVE+PHLMGWDYPKCDRAMPNM RI+ASL+LARKH+TCC+ S RFYRLANECAQV
Sbjct  5025  KTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANECAQV  5084

Query  663   LSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRN  722
             LSE V+CGG  YVKPGGTSSGDATTAYANSVFNI QA TANV+AL+S +GN I D+ +++
Sbjct  5085  LSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDREIKD  5144

Query  723   LQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNF  782
             +Q  LY  +YR    D  FV+++YA+L KHFSMMILSDD VVC+NS YA++G VASI+NF
Sbjct  5145  MQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVASIQNF  5204

Query  783   KSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGC  842
             K  LYYQNNVFMSEAKCW ET+L KGPHEFCSQHT+ +K GDD  +LPYPDPSRIL AGC
Sbjct  5205  KETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRILSAGC  5264

Query  843   FVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDM  902
             FVDDIVKTDGT+M+ER+VSLAIDAYPLTKH + EY +VF +YLQYI KL+ +LTGHMLD 
Sbjct  5265  FVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTGHMLDS  5324

Query  903   YSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             YSVML  D+++++WE  FY  +Y+  T LQ
Sbjct  5325  YSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ  5354


>sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus 
133/2005 OX=389230 GN=rep PE=3 SV=1
Length=7126

 Score = 1410 bits (3650),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 660/930 (71%), Positives = 777/930 (84%), Gaps = 3/930 (0%)

Query  6     SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDK--VAGFAKFLKTNCCRFQEKDED  62
             +FLNRV G S  ARL PC +G +TDVVYRAFDI N K  VAG  K+ KTN CRF + D++
Sbjct  4432  NFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQVDDE  4491

Query  63    DNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKY  122
              + +DSYF+VKRHT SNY+ E+  Y+LLKDC AVA HDFF F +D    PHI RQ LT+Y
Sbjct  4492  GHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQSLTEY  4551

Query  123   TMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERV  182
             TM DLVYALRHFD+ NC+ LK ILV Y CC+  YF+ K W+DFVENP ++ VY  LGER+
Sbjct  4552  TMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKLGERI  4611

Query  183   RQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLM  242
             RQA+L TV+ CD M  +G+VGVLTLDNQDLNG WYDFGDF+ T PG+GV +VDSYYS LM
Sbjct  4612  RQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYYSYLM  4671

Query  243   PILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCL  302
             P+L++T  L AE+H D D  KP I+W LL+YD+T+ ++ LF++YFK+WDQTYHPNCVNC 
Sbjct  4672  PVLSMTNCLAAETHKDCDFNKPLIEWLLLEYDYTDYKIGLFNKYFKHWDQTYHPNCVNCG  4731

Query  303   DDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLH  362
             DDRCILHCANFNVLFS V P TSFGP+VRKIFVDGVPF+VS GYH++ELG+V N DVN+H
Sbjct  4732  DDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNMDVNIH  4791

Query  363   SSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDF  422
               RL+ KEL++YAADPAMH AS + L D RT CFSVAALT  + FQTV+PGNFNKDFYDF
Sbjct  4792  RHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKDFYDF  4851

Query  423   AVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDC  482
              VS+GFFKEGSSV LKHFFFAQDG+AAI+DY YY YNLPTM DI+Q+LF +EVVDKYFD 
Sbjct  4852  VVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVDKYFDI  4911

Query  483   YDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQM  542
             YDGGC+NA++VIVNNLDKSAG PFNK+GKAR+YY+SMSY++QD LFA TKRNV+PTITQM
Sbjct  4912  YDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLPTITQM  4971

Query  543   NLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML  602
             NLKYAISAKNRARTVAGVSI STMTNRQ+HQK+LKS+AATRGAT VIGT+KFYGGW  ML
Sbjct  4972  NLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGWDFML  5031

Query  603   KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQV  662
             KT+Y DVE+PHLMGWDYPKCDRAMPNM RI+ASL+LARKH+TCC+ S RFYRLANECAQV
Sbjct  5032  KTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANECAQV  5091

Query  663   LSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRN  722
             LSE V+CGG  YVKPGGTSSGDATTAYANSVFNI QA TANV+AL+S +GN I D+ +++
Sbjct  5092  LSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDREIKD  5151

Query  723   LQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNF  782
             +Q  LY  +YR    D  FV+++YA+L KHFSMMILSDD VVC+NS YA++G VASI+NF
Sbjct  5152  MQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVASIQNF  5211

Query  783   KSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGC  842
             K  LYYQNNVFMSEAKCW ET+L KGPHEFCSQHT+ +K GDD  +LPYPDPSRIL AGC
Sbjct  5212  KETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRILSAGC  5271

Query  843   FVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDM  902
             FVDDIVKTDGT+M+ER+VSLAIDAYPLTKH + EY +VF +YLQYI KL+ +LTGHMLD 
Sbjct  5272  FVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTGHMLDS  5331

Query  903   YSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             YSVML  D+++++WE  FY  +Y+  T LQ
Sbjct  5332  YSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ  5361


>sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavirus 
(strain 2) OX=76344 GN=rep PE=3 SV=1
Length=7124

 Score = 1308 bits (3384),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 618/928 (67%), Positives = 740/928 (80%), Gaps = 5/928 (1%)

Query  6     SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN  64
             +FLNRV G S  ARL PC +G  TDV  RAFDI N   AG   + K NCCRFQ  DED N
Sbjct  4407  NFLNRVRGTSVNARLVPCASGLDTDVQLRAFDICNANRAGIGLYYKVNCCRFQRADEDGN  4466

Query  65    LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM  124
              +D +FV+KR     Y  E+  Y L K+C  VA+H+FF F ++G  VPHI R+ L+KYTM
Sbjct  4467  TLDKFFVIKRTNLEVYNKEKECYELTKECGVVAEHEFFTFDVEGSRVPHIVRKDLSKYTM  4526

Query  125   ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ  184
              DL YALRHFD  +C TLKEIL+TY  CD+ YF KKDWYDFVEN DI+ VY  LG    +
Sbjct  4527  LDLCYALRHFDRNDCSTLKEILLTYAECDESYFQKKDWYDFVENSDIINVYKKLGPIFNR  4586

Query  185   ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI  244
             ALL T +F D +  AG+VGVLTLDNQDL G WYDFGDF++T PG GV V DSYYS +MP+
Sbjct  4587  ALLNTAKFADTLVEAGLVGVLTLDNQDLYGQWYDFGDFVKTVPGCGVAVADSYYSYMMPM  4646

Query  245   LTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD  304
             LT+  AL +E  ++      Y ++DL++YDFT+ +L+LF++YFKYW  TYHPN   C DD
Sbjct  4647  LTMCHALDSELFIN----GTYREFDLVQYDFTDFKLELFNKYFKYWSMTYHPNTCECEDD  4702

Query  305   RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS  364
             RCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+ H  
Sbjct  4703  RCIIHCANFNILFSMVLPKTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNMDVDTHRY  4762

Query  365   RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV  424
             RLS K+LL+YAADPA+H AS + LLD RT CFSVAA+T+ V FQTVKPGNFN+DFY+F +
Sbjct  4763  RLSLKDLLLYAADPALHVASASALLDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYEFIL  4822

Query  425   SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD  484
             SKG  KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV+KYF+ YD
Sbjct  4823  SKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVNKYFEIYD  4882

Query  485   GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL  544
             GGCI A QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+TQMNL
Sbjct  4883  GGCIPATQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEVYAYTKRNVLPTLTQMNL  4942

Query  545   KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT  604
             KYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG  VVIGT+KFYGGW +ML+ 
Sbjct  4943  KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRR  5002

Query  605   VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS  664
             +  DV++P LMGWDYPKCDRAMPN+LRI++SLVLARKH +CCS + RFYRLANECAQVLS
Sbjct  5003  LIKDVDSPVLMGWDYPKCDRAMPNILRIISSLVLARKHDSCCSHTDRFYRLANECAQVLS  5062

Query  665   EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ  724
             E+VMCGG  YVKPGGTSSGDATTA+ANSVFNICQAV+ANV +L++ +G+KI D  +R LQ
Sbjct  5063  EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCSLMACNGHKIEDLSIRELQ  5122

Query  725   HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS  784
              RLY  +YR   VD  FVNE+Y +L KHFSMMILSDD VVC+NS +AS+G +A+I  F+ 
Sbjct  5123  KRLYSNVYRADHVDPAFVNEYYEFLNKHFSMMILSDDGVVCYNSEFASKGYIANISAFQQ  5182

Query  785   VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV  844
             VLYYQNNVFMSEAKCW ETD+ KGPHEFCSQHTMLVK   D VYLPYPDPSRILGAGCFV
Sbjct  5183  VLYYQNNVFMSEAKCWVETDIEKGPHEFCSQHTMLVKMDGDEVYLPYPDPSRILGAGCFV  5242

Query  845   DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS  904
             DD++KTD  L+IERFVSLAIDAYPL  H N EY +VF +YL+YI+KL+++L   +LD YS
Sbjct  5243  DDLLKTDSVLLIERFVSLAIDAYPLVYHENPEYQNVFRVYLEYIKKLYNDLGNQILDSYS  5302

Query  905   VMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             V+L+  +  ++ +  FY+ MY    V+Q
Sbjct  5303  VILSTCDGQKFTDETFYKNMYLRSAVMQ  5330


>sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavirus 
(strain A59) OX=11142 GN=rep PE=1 SV=1
Length=7176

 Score = 1306 bits (3379),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 617/928 (66%), Positives = 741/928 (80%), Gaps = 5/928 (1%)

Query  6     SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN  64
             +FLNR+ G S  ARL PC +G  TDV  RAFDI N   AG   + K NCCRFQ  DED N
Sbjct  4459  NFLNRIRGTSVNARLVPCASGLDTDVQLRAFDICNANRAGIGLYYKVNCCRFQRVDEDGN  4518

Query  65    LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM  124
              +D +FVVKR     Y  E+  Y L K+C  VA+H+FF F ++G  VPHI R+ L+K+TM
Sbjct  4519  KLDKFFVVKRTNLEVYNKEKECYELTKECGVVAEHEFFTFDVEGSRVPHIVRKDLSKFTM  4578

Query  125   ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ  184
              DL YALRHFD  +C TLKEIL+TY  C++ YF KKDWYDFVENPDI+ VY  LG    +
Sbjct  4579  LDLCYALRHFDRNDCSTLKEILLTYAECEESYFQKKDWYDFVENPDIINVYKKLGPIFNR  4638

Query  185   ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI  244
             ALL T +F DA+  AG+VGVLTLDNQDL G WYDFGDF++T PG GV V DSYYS +MP+
Sbjct  4639  ALLNTAKFADALVEAGLVGVLTLDNQDLYGQWYDFGDFVKTVPGCGVAVADSYYSYMMPM  4698

Query  245   LTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD  304
             LT+  AL +E  V+      Y ++DL++YDFT+ +L+LF +YFK+W  TYHPN   C DD
Sbjct  4699  LTMCHALDSELFVN----GTYREFDLVQYDFTDFKLELFTKYFKHWSMTYHPNTCECEDD  4754

Query  305   RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS  364
             RCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+ H  
Sbjct  4755  RCIIHCANFNILFSMVLPKTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNMDVDTHRY  4814

Query  365   RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV  424
             RLS K+LL+YAADPA+H AS + LLD RT CFSVAA+T+ V FQTVKPGNFN+DFY+F +
Sbjct  4815  RLSLKDLLLYAADPALHVASASALLDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYEFIL  4874

Query  425   SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD  484
             SKG  KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV+KYF+ Y+
Sbjct  4875  SKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVNKYFEIYE  4934

Query  485   GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL  544
             GGCI A QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+TQMNL
Sbjct  4935  GGCIPATQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNL  4994

Query  545   KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT  604
             KYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG  VVIGT+KFYGGW +ML+ 
Sbjct  4995  KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRR  5054

Query  605   VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS  664
             +  DV++P LMGWDYPKCDRAMPN+LRI++SLVLARKH +CCS + RFYRLANECAQVLS
Sbjct  5055  LIKDVDSPVLMGWDYPKCDRAMPNILRIVSSLVLARKHDSCCSHTDRFYRLANECAQVLS  5114

Query  665   EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ  724
             E+VMCGG  YVKPGGTSSGDATTA+ANSVFNICQAV+ANV +L++ +G+KI D  +R LQ
Sbjct  5115  EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCSLMACNGHKIEDLSIRELQ  5174

Query  725   HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS  784
              RLY  +YR   VD  FV+E+Y +L KHFSMMILSDD VVC+NS +AS+G +A+I  F+ 
Sbjct  5175  KRLYSNVYRADHVDPAFVSEYYEFLNKHFSMMILSDDGVVCYNSEFASKGYIANISAFQQ  5234

Query  785   VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV  844
             VLYYQNNVFMSEAKCW ETD+ KGPHEFCSQHTMLVK   D VYLPYPDPSRILGAGCFV
Sbjct  5235  VLYYQNNVFMSEAKCWVETDIEKGPHEFCSQHTMLVKMDGDEVYLPYPDPSRILGAGCFV  5294

Query  845   DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS  904
             DD++KTD  L+IERFVSLAIDAYPL  H N EY +VF +YL+YI+KL+++L   +LD YS
Sbjct  5295  DDLLKTDSVLLIERFVSLAIDAYPLVYHENPEYQNVFRVYLEYIKKLYNDLGNQILDSYS  5354

Query  905   VMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             V+L+  +  ++ +  FY+ MY    VLQ
Sbjct  5355  VILSTCDGQKFTDETFYKNMYLRSAVLQ  5382


>sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavirus 
HKU1 (isolate N1) OX=443239 GN=rep PE=3 SV=1
Length=7182

 Score = 1300 bits (3365),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 623/928 (67%), Positives = 735/928 (79%), Gaps = 5/928 (1%)

Query  6     SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN  64
             +FLNRV G S  ARL PC +G STDV  RAFDI N   AG   + K NCCRFQ  D+D N
Sbjct  4462  NFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRIDDDGN  4521

Query  65    LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM  124
              +D +FVVKR     Y  E+T Y L K C  VA+HDFF F IDG  VPHI R+ L+KYTM
Sbjct  4522  KLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRRNLSKYTM  4581

Query  125   ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ  184
              DL YALRHFD  +C  L EIL  Y  C + YF+KKDWYDFVENPDI+ +Y  LG    +
Sbjct  4582  LDLCYALRHFDRNDCSILCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGPIFNR  4641

Query  185   ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI  244
             ALL TV F D +   G+VGVLTLDNQDL G WYDFGDFIQT PG GV V DSYYS +MP+
Sbjct  4642  ALLNTVIFADTLVEVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSYMMPM  4701

Query  245   LTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD  304
             LT+   L  E  V+      Y ++DL++YDFT+ +L+LF++YFKYW   YHPN V+C +D
Sbjct  4702  LTMCHVLDCELFVN----DSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVDCDND  4757

Query  305   RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS  364
             RCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+ H  
Sbjct  4758  RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVDTHRY  4817

Query  365   RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV  424
             RLS K+LL+YAADPAMH AS + LLD RT CFSVAA+T+ + FQTVKPGNFN+DFY+F  
Sbjct  4818  RLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFYEFVK  4877

Query  425   SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD  484
             SKG FKEGS+V+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF+ YD
Sbjct  4878  SKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD  4937

Query  485   GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL  544
             GGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+Q+ ++AYTKRNV+PT+TQMNL
Sbjct  4938  GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNL  4997

Query  545   KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT  604
             KYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG  VVIGT+KFYGGW +ML+ 
Sbjct  4998  KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRH  5057

Query  605   VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS  664
             +  DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH  CCS   RFYRLANECAQVLS
Sbjct  5058  LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLS  5117

Query  665   EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ  724
             E+VMCGG  YVKPGGTSSGDATTA+ANSVFNICQAVTANV +L++ +G+KI D  +RNLQ
Sbjct  5118  EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQ  5177

Query  725   HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS  784
              RLY  +YR   VD  FVNE+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I  F+ 
Sbjct  5178  KRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANISVFQQ  5237

Query  785   VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV  844
             VLYYQNNVFMSE+KCW E D+T GPHEFCSQHTMLVK   DYVYLPYPDPSRILGAGCFV
Sbjct  5238  VLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGAGCFV  5297

Query  845   DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS  904
             DD++KTD  L+IERFVSLAIDAYPL  H N+EY  VF +YL+YI+KL+++L   +LD YS
Sbjct  5298  DDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGTQILDSYS  5357

Query  905   VMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             V+L+  +  ++ E  FY+ MY    V+Q
Sbjct  5358  VILSTCDGLKFTEESFYKNMYLKSAVMQ  5385


>sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavirus 
HKU1 (isolate N5) OX=443241 GN=rep PE=3 SV=1
Length=7132

 Score = 1299 bits (3362),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 622/928 (67%), Positives = 735/928 (79%), Gaps = 5/928 (1%)

Query  6     SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN  64
             +FLNRV G S  ARL PC +G STDV  RAFDI N   AG   + K NCCRFQ  D+D N
Sbjct  4412  NFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRIDDDGN  4471

Query  65    LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM  124
              +D +FVVKR     Y  E+T Y L K C  VA+HDFF F IDG  VPHI R+ L+KYTM
Sbjct  4472  KLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRRNLSKYTM  4531

Query  125   ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ  184
              DL YALRHFD  +C  L EIL  Y  C + YF+KKDWYDFVENPDI+ +Y  LG    +
Sbjct  4532  LDLCYALRHFDRNDCSILCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGPIFNR  4591

Query  185   ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI  244
             ALL TV F D +   G+VGVLTLDNQDL G WYDFGDFIQT PG GV V DSYYS +MP+
Sbjct  4592  ALLNTVIFADTLVEVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSYMMPM  4651

Query  245   LTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD  304
             LT+   L  E  V+      Y ++DL++YDFT+ +L+LF++YFKYW   YHPN V+C +D
Sbjct  4652  LTMCHVLDCELFVN----DSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVDCDND  4707

Query  305   RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS  364
             RCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+ H  
Sbjct  4708  RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVDTHRY  4767

Query  365   RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV  424
             RLS K+LL+YAADPAMH AS + LLD RT CFSVAA+T+ + FQTVKPGNFN+DFY+F  
Sbjct  4768  RLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFYEFVK  4827

Query  425   SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD  484
             SKG FKEGS+V+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF+ YD
Sbjct  4828  SKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD  4887

Query  485   GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL  544
             GGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+Q+ ++AYTKRNV+PT+TQMNL
Sbjct  4888  GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNL  4947

Query  545   KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT  604
             KYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG  VVIGT+KFYGGW +ML+ 
Sbjct  4948  KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRH  5007

Query  605   VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS  664
             +  DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH  CCS   RFYRLANECAQVLS
Sbjct  5008  LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLS  5067

Query  665   EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ  724
             E+VMCGG  YVKPGGTSSGDATTA+ANSVFNICQAVTANV +L++ +G+KI D  +RNLQ
Sbjct  5068  EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQ  5127

Query  725   HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS  784
              RLY  +YR   VD  FVNE+Y +L KHFSMMILSDD VVC+NS YA++G +A+I  F+ 
Sbjct  5128  KRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYANKGYIANISAFQQ  5187

Query  785   VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV  844
             VLYYQNNVFMSE+KCW E D+T GPHEFCSQHTMLVK   DYVYLPYPDPSRILGAGCFV
Sbjct  5188  VLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGAGCFV  5247

Query  845   DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS  904
             DD++KTD  L+IERFVSLAIDAYPL  H N+EY  VF +YL+YI+KL+++L   +LD YS
Sbjct  5248  DDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNDLGTQILDSYS  5307

Query  905   VMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             V+L+  +  ++ E  FY+ MY    V+Q
Sbjct  5308  VILSTCDGLKFTEESFYKNMYLKSAVMQ  5335


>sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavirus 
HKU1 (isolate N2) OX=443240 GN=rep PE=3 SV=1
Length=7152

 Score = 1299 bits (3361),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 622/928 (67%), Positives = 735/928 (79%), Gaps = 5/928 (1%)

Query  6     SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN  64
             +FLNRV G S  ARL PC +G STDV  RAFDI N   AG   + K NCCRFQ  D+D N
Sbjct  4432  NFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRIDDDGN  4491

Query  65    LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM  124
              +D +FVVKR     Y  E+T Y L K C  VA+HDFF F IDG  VPHI R+ L+KYTM
Sbjct  4492  KLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKNLSKYTM  4551

Query  125   ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ  184
              DL YALRHFD  +C  L EIL  Y  C + YF+KKDWYDFVENPDI+ +Y  LG    +
Sbjct  4552  LDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGPIFNR  4611

Query  185   ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI  244
             ALL TV F D +   G+VGVLTLDNQDL G WYDFGDFIQT PG GV V DSYYS +MP+
Sbjct  4612  ALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSYMMPM  4671

Query  245   LTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD  304
             LT+   L  E  V+      Y ++DL++YDFT+ +L+LF++YFKYW   YHPN V+C +D
Sbjct  4672  LTMCHVLDCELFVN----DSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVDCDND  4727

Query  305   RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS  364
             RCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+ H  
Sbjct  4728  RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVDTHRY  4787

Query  365   RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV  424
             RLS K+LL+YAADPAMH AS + LLD RT CFSVAA+T+ + FQTVKPGNFN+DFY+F  
Sbjct  4788  RLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFYEFVK  4847

Query  425   SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD  484
             SKG FKEGS+V+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF+ YD
Sbjct  4848  SKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD  4907

Query  485   GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL  544
             GGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+Q+ ++AYTKRNV+PT+TQMNL
Sbjct  4908  GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNL  4967

Query  545   KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT  604
             KYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG  VVIGT+KFYGGW +ML+ 
Sbjct  4968  KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRH  5027

Query  605   VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS  664
             +  DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH  CCS   RFYRLANECAQVLS
Sbjct  5028  LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLS  5087

Query  665   EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ  724
             E+VMCGG  YVKPGGTSSGDATTA+ANSVFNICQAVTANV +L++ +G+KI D  +RNLQ
Sbjct  5088  EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQ  5147

Query  725   HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS  784
              RLY  +YR   VD  FVNE+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I  F+ 
Sbjct  5148  KRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANISVFQQ  5207

Query  785   VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV  844
             VLYYQNNVFMSE+KCW E D+T GPHEFCSQHTMLVK   DYVYLPYPDPSRILGAGCFV
Sbjct  5208  VLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGAGCFV  5267

Query  845   DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS  904
             DD++KTD  L+IERFVSLAIDAYPL  H N+EY  VF +YL+YI+KL+++L   +LD YS
Sbjct  5268  DDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGNQILDSYS  5327

Query  905   VMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             V+L+  +  ++ +  FY+ MY    V+Q
Sbjct  5328  VILSTCDGLKFTDESFYKNMYLKSAVMQ  5355


>sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavirus 
OC43 OX=31631 GN=rep PE=1 SV=1
Length=7095

 Score = 1296 bits (3354),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 615/928 (66%), Positives = 733/928 (79%), Gaps = 5/928 (1%)

Query  6     SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN  64
             +FLNRV G S  ARL PC +G STDV  RAFDIYN  VAG    LK NCCRFQ  DE+ +
Sbjct  4374  NFLNRVRGASVDARLVPCASGLSTDVQLRAFDIYNASVAGIGLHLKVNCCRFQRVDENGD  4433

Query  65    LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM  124
              +D +FVVKR   + Y  E   Y  +KDC  VA+HDFF F ++G  VPHI R+ LTKYTM
Sbjct  4434  KLDQFFVVKRTDLTIYNREMKCYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLTKYTM  4493

Query  125   ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ  184
              DL YALRHFD  +C  L +IL  Y  C+  YF KKDWYDFVENPDI+ VY  LG    +
Sbjct  4494  LDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGPIFNR  4553

Query  185   ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI  244
             AL+   +F D +   G+VGVLTLDNQDLNG WYDFGD++   PG GV + DSYYS +MP+
Sbjct  4554  ALVSATEFADKLVEVGLVGVLTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSYIMPM  4613

Query  245   LTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD  304
             LT+  AL  E +V+      Y  +DL++YDFT+ +L+LF++YFK+W   YHPN V+C DD
Sbjct  4614  LTMCHALDCELYVN----NAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTVDCQDD  4669

Query  305   RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS  364
             RCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELG+V N DV+ H  
Sbjct  4670  RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDVDTHRY  4729

Query  365   RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV  424
             RLS K+LL+YAADPA+H AS + L D RT CFSVAA+T+ V FQTVKPGNFN+DFYDF +
Sbjct  4730  RLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYDFVL  4789

Query  425   SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD  484
             SKG  KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF+ YD
Sbjct  4790  SKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD  4849

Query  485   GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL  544
             GGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+TQMNL
Sbjct  4850  GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNL  4909

Query  545   KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT  604
             KYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG  VVIGT+KFYGGW +ML+ 
Sbjct  4910  KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRR  4969

Query  605   VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS  664
             +  DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH TCCS S RFYRLANECAQVLS
Sbjct  4970  LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHETCCSQSDRFYRLANECAQVLS  5029

Query  665   EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ  724
             E+VMCGG  YVKPGGTSSGDATTA+ANSVFNICQAV+ANV AL+S +GNKI D  +R LQ
Sbjct  5030  EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLSIRALQ  5089

Query  725   HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS  784
              RLY  +YR+  VD+ FV E+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I  F+ 
Sbjct  5090  KRLYSHVYRSDKVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANISAFQQ  5149

Query  785   VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV  844
             VLYYQNNVFMSE+KCW E D+  GPHEFCSQHTMLVK   D VYLPYP+PSRILGAGCFV
Sbjct  5150  VLYYQNNVFMSESKCWVEHDINNGPHEFCSQHTMLVKMDGDDVYLPYPNPSRILGAGCFV  5209

Query  845   DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS  904
             DD++KTD  L+IERFVSLAIDAYPL  H N+EY  VF +YL YI+KL+++L   +LD YS
Sbjct  5210  DDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLAYIKKLYNDLGNQILDSYS  5269

Query  905   VMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             V+L+  +  ++ +  FY+ MY    V+Q
Sbjct  5270  VILSTCDGQKFTDESFYKNMYLRSAVMQ  5297


>sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavirus 
(strain 98TXSF-110-LUN) OX=233264 GN=rep PE=3 SV=1
Length=7094

 Score = 1294 bits (3348),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 613/928 (66%), Positives = 732/928 (79%), Gaps = 5/928 (1%)

Query  6     SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN  64
             +FLNRV G S  ARL PC +G STDV  RAFDI N  VAG    LK NCCRFQ  DE+ +
Sbjct  4374  NFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICNASVAGIGLHLKVNCCRFQRVDENGD  4433

Query  65    LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM  124
              +D +FVVKR   + Y  E   Y  +KDC  VA+HDFF F ++G  VPHI R+ LTKYTM
Sbjct  4434  KLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLTKYTM  4493

Query  125   ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ  184
              DL YALRHFD  +C  L +IL  Y  C+  YF KKDWYDFVENPDI+ VY  LG    +
Sbjct  4494  LDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGPIFNR  4553

Query  185   ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI  244
             AL+   +F D +   G+VG+LTLDNQDLNG WYDFGD++   PG GV + DSYYS +MP+
Sbjct  4554  ALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSYMMPM  4613

Query  245   LTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD  304
             LT+  AL  E +V+      Y  +DL++YDFT+ +L+LF++YFK+W   YHPN V+C DD
Sbjct  4614  LTMCHALDCELYVN----NAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTVDCQDD  4669

Query  305   RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS  364
             RCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELG+V N DV+ H  
Sbjct  4670  RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDVDTHRY  4729

Query  365   RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV  424
             RLS K+LL+YAADPA+H AS + L D RT CFSVAA+T+ V FQTVKPGNFN+DFYDF +
Sbjct  4730  RLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYDFIL  4789

Query  425   SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD  484
             SKG  KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF+ YD
Sbjct  4790  SKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD  4849

Query  485   GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL  544
             GGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+TQMNL
Sbjct  4850  GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNL  4909

Query  545   KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT  604
             KYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG  VVIGT+KFYGGW +ML+ 
Sbjct  4910  KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRR  4969

Query  605   VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS  664
             +  DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH  CCS S RFYRLANECAQVLS
Sbjct  4970  LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANECAQVLS  5029

Query  665   EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ  724
             E+VMCGG  YVKPGGTSSGDATTA+ANSVFNICQAV+ANV AL+S +GNKI D  +R LQ
Sbjct  5030  EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLSIRALQ  5089

Query  725   HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS  784
              RLY  +YR+  VD+ FV E+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I  F+ 
Sbjct  5090  KRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANISAFQQ  5149

Query  785   VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV  844
             VLYYQNNVFMSE+KCW E D+  GPHEFCSQHTMLVK   D VYLPYPDPSRILGAGCFV
Sbjct  5150  VLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVYLPYPDPSRILGAGCFV  5209

Query  845   DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS  904
             DD++KTD  L+IERFVSLAIDAYPL  H N+EY  VF +YL+YI+KL+++L   +LD YS
Sbjct  5210  DDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNDLGNQILDSYS  5269

Query  905   VMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             V+L+  +  ++ +  FY+ MY    V+Q
Sbjct  5270  VILSTCDGQKFTDESFYKNMYLRSAVMQ  5297


>sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavirus 
(strain 98TXSF-110-ENT) OX=233262 GN=rep PE=3 SV=1
Length=7094

 Score = 1294 bits (3348),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 613/928 (66%), Positives = 732/928 (79%), Gaps = 5/928 (1%)

Query  6     SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN  64
             +FLNRV G S  ARL PC +G STDV  RAFDI N  VAG    LK NCCRFQ  DE+ +
Sbjct  4374  NFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICNASVAGIGLHLKVNCCRFQRVDENGD  4433

Query  65    LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM  124
              +D +FVVKR   + Y  E   Y  +KDC  VA+HDFF F ++G  VPHI R+ LTKYTM
Sbjct  4434  KLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLTKYTM  4493

Query  125   ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ  184
              DL YALRHFD  +C  L +IL  Y  C+  YF KKDWYDFVENPDI+ VY  LG    +
Sbjct  4494  LDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGPIFNR  4553

Query  185   ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI  244
             AL+   +F D +   G+VG+LTLDNQDLNG WYDFGD++   PG GV + DSYYS +MP+
Sbjct  4554  ALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSYMMPM  4613

Query  245   LTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD  304
             LT+  AL  E +V+      Y  +DL++YDFT+ +L+LF++YFK+W   YHPN V+C DD
Sbjct  4614  LTMCHALDCELYVN----NAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTVDCQDD  4669

Query  305   RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS  364
             RCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELG+V N DV+ H  
Sbjct  4670  RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDVDTHRY  4729

Query  365   RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV  424
             RLS K+LL+YAADPA+H AS + L D RT CFSVAA+T+ V FQTVKPGNFN+DFYDF +
Sbjct  4730  RLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYDFIL  4789

Query  425   SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD  484
             SKG  KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF+ YD
Sbjct  4790  SKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD  4849

Query  485   GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL  544
             GGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+TQMNL
Sbjct  4850  GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNL  4909

Query  545   KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT  604
             KYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG  VVIGT+KFYGGW +ML+ 
Sbjct  4910  KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRR  4969

Query  605   VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS  664
             +  DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH  CCS S RFYRLANECAQVLS
Sbjct  4970  LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANECAQVLS  5029

Query  665   EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ  724
             E+VMCGG  YVKPGGTSSGDATTA+ANSVFNICQAV+ANV AL+S +GNKI D  +R LQ
Sbjct  5030  EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLSIRALQ  5089

Query  725   HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS  784
              RLY  +YR+  VD+ FV E+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I  F+ 
Sbjct  5090  KRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANISAFQQ  5149

Query  785   VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV  844
             VLYYQNNVFMSE+KCW E D+  GPHEFCSQHTMLVK   D VYLPYPDPSRILGAGCFV
Sbjct  5150  VLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVYLPYPDPSRILGAGCFV  5209

Query  845   DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS  904
             DD++KTD  L+IERFVSLAIDAYPL  H N+EY  VF +YL+YI+KL+++L   +LD YS
Sbjct  5210  DDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNDLGNQILDSYS  5269

Query  905   VMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             V+L+  +  ++ +  FY+ MY    V+Q
Sbjct  5270  VILSTCDGQKFTDESFYKNMYLRSAVMQ  5297


>sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavirus 
(strain JHM) OX=11144 GN=rep PE=1 SV=1
Length=7180

 Score = 1292 bits (3344),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 613/928 (66%), Positives = 737/928 (79%), Gaps = 5/928 (1%)

Query  6     SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN  64
             +FLNRV G S  ARL PC +G  TDV  RAFDI N   AG   + K NC RFQ  DE+ N
Sbjct  4465  NFLNRVRGTSVNARLVPCASGLDTDVQLRAFDICNANRAGIGLYYKVNCFRFQRVDEEGN  4524

Query  65    LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM  124
              +D +FVVKR     Y  E+  Y L KDC  VA+H+FF F ++G  VPHI R+ L+K+TM
Sbjct  4525  KLDKFFVVKRTNLEVYNKEKECYELTKDCGVVAEHEFFTFDVEGSRVPHIVRKDLSKFTM  4584

Query  125   ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ  184
              DL YALRHFD  +C TLKEIL+TY  CD+ YF KKDWYDFVENPDI+ VY  LG    +
Sbjct  4585  LDLCYALRHFDRNDCSTLKEILLTYAECDESYFQKKDWYDFVENPDIINVYKKLGPIFNR  4644

Query  185   ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI  244
             ALL T  F D +  AG+VGVLTLDNQDL G WYDFGDF++T P  GV V DSYYS +MP+
Sbjct  4645  ALLNTANFADTLVEAGLVGVLTLDNQDLYGQWYDFGDFVKTVPCCGVAVADSYYSYMMPM  4704

Query  245   LTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD  304
             LT+  AL +E  V+      Y ++DL++YDFT+ +L+LF++YFK+W  TYHPN   C DD
Sbjct  4705  LTMCHALDSELFVN----GTYREFDLVQYDFTDFKLELFNKYFKHWSMTYHPNTSECEDD  4760

Query  305   RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS  364
             RCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+ H  
Sbjct  4761  RCIIHCANFNILFSMVLPKTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNMDVDTHRY  4820

Query  365   RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV  424
             RLS K+LL+YAADPA+H AS + LLD RT CFSVAA+T+ V FQTVKPGNFN+DFY+F +
Sbjct  4821  RLSLKDLLLYAADPALHVASASALLDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYEFIL  4880

Query  425   SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD  484
             SKG  KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFVVEVV+KYF+ Y+
Sbjct  4881  SKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVVEVVNKYFEIYE  4940

Query  485   GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL  544
             GGCI A QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+TQMNL
Sbjct  4941  GGCIPATQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNL  5000

Query  545   KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT  604
             KYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG  VVIGT+KFYGGW +ML+ 
Sbjct  5001  KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRR  5060

Query  605   VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS  664
             +  DV++P LMGWDYPKCDRAMPN+LRI++SLVLARKH +CCS + RFYRLANECAQVL 
Sbjct  5061  LIKDVDSPVLMGWDYPKCDRAMPNILRIVSSLVLARKHDSCCSHTDRFYRLANECAQVLG  5120

Query  665   EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ  724
             E+VMCGG  YVKPGGTSSGDATTA+ANSVFNICQAV+ANV +L++ +G+KI D  +R LQ
Sbjct  5121  EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCSLMACNGHKIEDLSIRELQ  5180

Query  725   HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS  784
              RLY  +YR   VD  FV+E+Y +L KHFSM+ILSDD VVC+NS +AS+G +A+I +F+ 
Sbjct  5181  KRLYSNVYRADHVDPAFVSEYYEFLNKHFSMIILSDDGVVCYNSEFASKGYIANISDFQQ  5240

Query  785   VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV  844
             VLYYQNNVFMSEAKCW ETD+ KGPHEFCSQHTMLVK   D VYLPYPDPSRILGAGCFV
Sbjct  5241  VLYYQNNVFMSEAKCWVETDIEKGPHEFCSQHTMLVKMDGDEVYLPYPDPSRILGAGCFV  5300

Query  845   DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS  904
             DD++KTD  L+IERFVSLAIDAYPL  H N EY +VF +YL+YI+KL+++L   +LD  S
Sbjct  5301  DDLLKTDSVLLIERFVSLAIDAYPLVYHENPEYQNVFRVYLEYIKKLYNDLGNQILDSIS  5360

Query  905   VMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             V+L+  +  ++ +  FY+ MY    V+Q
Sbjct  5361  VILSTCDGQKFTDETFYKNMYLRSAVMQ  5388


>sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavirus 
(strain Quebec) OX=11133 GN=rep PE=3 SV=1
Length=7059

 Score = 1290 bits (3339),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 613/928 (66%), Positives = 730/928 (79%), Gaps = 5/928 (1%)

Query  6     SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN  64
             +FLNRV G S  ARL PC +G STDV  RAFDI N  VAG    LK NCCRFQ  DE+ +
Sbjct  4374  NFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICNASVAGIGLHLKVNCCRFQRVDENGD  4433

Query  65    LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM  124
              +D +FVVKR   + Y  E   Y  +KDC  VA+HDFF F ++G  VPHI R+ LTKYTM
Sbjct  4434  KLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLTKYTM  4493

Query  125   ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ  184
              DL YALRHFD  +C  L +IL  Y  C+  YF KKDWYDFVENPDI+ VY  LG    +
Sbjct  4494  LDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGPIFNR  4553

Query  185   ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI  244
             AL+   +F D +   G+VG+LTLDNQDLNG WYDFGD++   PG GV + DSYYS +MP+
Sbjct  4554  ALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSYMMPM  4613

Query  245   LTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD  304
             LT+  AL  E +V+      Y  +DL++YDFT+ +L+LF++YFK+W   YHPN V+C DD
Sbjct  4614  LTMCHALDCELYVN----NAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTVDCQDD  4669

Query  305   RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS  364
             RCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELG+V N DV+ H  
Sbjct  4670  RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDVDTHRY  4729

Query  365   RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV  424
             RLS K+LL+YAADPA+H AS + L D RT CFSVAA+T+ V FQTVKPGNFN+DFYDF +
Sbjct  4730  RLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYDFIL  4789

Query  425   SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD  484
             SKG  KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF+ YD
Sbjct  4790  SKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD  4849

Query  485   GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL  544
             GGCI A QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+TQMNL
Sbjct  4850  GGCIPAAQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNL  4909

Query  545   KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT  604
             KYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG  VVIGT+KFYGGW +ML+ 
Sbjct  4910  KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRR  4969

Query  605   VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS  664
             +  DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH  CCS S RFYRLANECAQVLS
Sbjct  4970  LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANECAQVLS  5029

Query  665   EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ  724
             E+VMCGG  YVKPGGTSSGDATTA+ANSVFNICQAV+ANV AL+S +GNKI D  +R LQ
Sbjct  5030  EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLSIRALQ  5089

Query  725   HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS  784
              RLY  +YR+  VD+ FV E+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I  F+ 
Sbjct  5090  KRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANISAFQQ  5149

Query  785   VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV  844
             VLYYQNNVFMSE+KCW E D+  GPHEFCSQHTMLVK   D VYLPYP PSRILGAGCFV
Sbjct  5150  VLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVYLPYPVPSRILGAGCFV  5209

Query  845   DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS  904
             DD++KTD  L+IERFVSLAIDAYPL  H N+EY  VF +YL+YI+KL++EL   +LD YS
Sbjct  5210  DDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNELGNQILDSYS  5269

Query  905   VMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             V+L+  +  ++ +  FY+ MY    V+Q
Sbjct  5270  VILSTCDGQKFTDESFYKNMYLRSAVMQ  5297


>sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavirus 
(strain Mebus) OX=11132 GN=rep PE=3 SV=1
Length=7094

 Score = 1287 bits (3331),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 612/928 (66%), Positives = 730/928 (79%), Gaps = 5/928 (1%)

Query  6     SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN  64
             +FLNRV G S  ARL PC +G STDV  RAFDI N  VAG    LK NCCRFQ  DE+ +
Sbjct  4374  NFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICNASVAGIGLHLKVNCCRFQRVDENGD  4433

Query  65    LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM  124
              +D +FVVKR   + Y  E   Y  +KDC  VA+HDFF F ++G  VPHI R+ LTKYTM
Sbjct  4434  KLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLTKYTM  4493

Query  125   ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ  184
              DL YALRHFD  +C  L +IL  Y  C+  YF KKDWYDFVENPDI+ VY  LG    +
Sbjct  4494  LDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGPIFNR  4553

Query  185   ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI  244
             AL+   +F D +   G+VG+LTLDNQDLNG WYDFGD++   PG GV + DSYYS +MP+
Sbjct  4554  ALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSYMMPM  4613

Query  245   LTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD  304
             LT+  AL  E +V+      Y  +DL++YDFT+ +L+LF++YFK+W   YHPN V+C DD
Sbjct  4614  LTMCHALDCELYVN----NAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTVDCQDD  4669

Query  305   RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS  364
             RCI+ CANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELG+V N DV+ H  
Sbjct  4670  RCIIRCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDVDTHRY  4729

Query  365   RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV  424
             RLS K+LL+YAADPA+H AS + L D RT CFSVAA+T+ V FQTVKPGNFN+DFYDF +
Sbjct  4730  RLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYDFIL  4789

Query  425   SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD  484
             SKG  KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF+ YD
Sbjct  4790  SKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD  4849

Query  485   GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL  544
             GGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+TQMNL
Sbjct  4850  GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNL  4909

Query  545   KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT  604
             KYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG  VVIGT+KFYGGW +ML+ 
Sbjct  4910  KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRR  4969

Query  605   VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS  664
             +  DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH  CCS S RFYRLANE AQVLS
Sbjct  4970  LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANEYAQVLS  5029

Query  665   EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ  724
             E+VMCGG  YVKPGGTSSGDATTA+ANSVFNICQAV+ANV AL+S +GNKI D  +R LQ
Sbjct  5030  EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLSIRALQ  5089

Query  725   HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS  784
              RLY  +YR+  VD+ FV E+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I  F+ 
Sbjct  5090  KRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANISAFQQ  5149

Query  785   VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV  844
             VLYYQNNVFMSE+KCW E D+  GPHEFCSQHTMLVK   D VYLPYPDPSRILGAGCFV
Sbjct  5150  VLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVYLPYPDPSRILGAGCFV  5209

Query  845   DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS  904
             DD++KTD  L+IERFVSLAIDAYPL  H N+EY  VF +YL+YI+KL++EL   +LD YS
Sbjct  5210  DDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNELGNQILDSYS  5269

Query  905   VMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             V+L+  +  ++ +  FY+ MY    V+Q
Sbjct  5270  VILSTCDGQKFTDESFYKNMYLRSAVMQ  5297


>sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectious 
bronchitis virus (strain Beaudette CK) OX=160235 GN=rep 
PE=3 SV=1
Length=6629

 Score = 1186 bits (3068),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 582/936 (62%), Positives = 707/936 (76%), Gaps = 13/936 (1%)

Query  5     QSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQE--KDED  62
             +++LNRV G S ARL P  +G   DVV RAFD+ N + AG  + LK NC RFQE    ED
Sbjct  3938  KNYLNRVRGSSEARLIPLASGCDPDVVKRAFDVCNKESAGMFQNLKRNCARFQELRDTED  3997

Query  63    DNL--IDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT  120
              NL  +DSYFVVK+ T SNY+HE++ Y  LK     A HDFF F  +   + +ISRQRLT
Sbjct  3998  GNLEYLDSYFVVKQTTPSNYEHEKSCYEDLKS-EVTADHDFFVFNKN---IYNISRQRLT  4053

Query  121   KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDD---DYFNK-KDWYDFVENPDILRVYA  176
             KYTM D  YALRHFD  +C+ LKEILVTY C +D    +F + KDWYD +EN     + A
Sbjct  4054  KYTMMDFCYALRHFDPKDCEVLKEILVTYGCIEDYHPKWFEENKDWYDPIENSKYYVMLA  4113

Query  177   NLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDS  236
              +G  VR+ALL  ++F + M   G VGV+TLDNQDLNG +YDFGDF +T PG+GVPV D+
Sbjct  4114  KMGPIVRRALLNAIEFGNLMVEKGYVGVITLDNQDLNGKFYDFGDFQKTAPGAGVPVFDT  4173

Query  237   YYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHP  296
             YYS +MPI+ +T AL  E + + D+ K Y  +DLLKYD+TEE+ +LF +YFKYWDQ YHP
Sbjct  4174  YYSYMMPIIAMTDALAPERYFEYDVHKGYKSYDLLKYDYTEEKQELFQKYFKYWDQEYHP  4233

Query  297   NCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHN  356
             NC +C DDRC++HCANFN+LFST+ P TSFG L RK+FVDGVPF+ + GYH +ELGV+ N
Sbjct  4234  NCRDCSDDRCLIHCANFNILFSTLIPQTSFGNLCRKVFVDGVPFIATCGYHSKELGVIMN  4293

Query  357   QDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFN  416
             QD  +  S++   +L+ +  DPA+   + N L+D RT+CFSV ALT+ +  QTVKPG+FN
Sbjct  4294  QDNTMSFSKMGLSQLMQFVGDPALLVGTSNNLVDLRTSCFSVCALTSGITHQTVKPGHFN  4353

Query  417   KDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVV  476
             KDFYDFA   G FKEGSS+ LKHFF+ Q GNAAI+DYDYYRYN PTM DI QLLF +EV 
Sbjct  4354  KDFYDFAEKAGMFKEGSSIPLKHFFYPQTGNAAINDYDYYRYNRPTMFDICQLLFCLEVT  4413

Query  477   DKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVI  536
              KYF+CY+GGCI A+QV+VNNLDKSAG+PFNK+GKARLYY+ MS E+QD LF  TK+NV+
Sbjct  4414  SKYFECYEGGCIPASQVVVNNLDKSAGYPFNKFGKARLYYE-MSLEEQDQLFEITKKNVL  4472

Query  537   PTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYG  596
             PTITQMNLKYAISAKNRARTVAGVSI STMTNRQFHQK+LKSI  TR A+VVIGT+KFYG
Sbjct  4473  PTITQMNLKYAISAKNRARTVAGVSILSTMTNRQFHQKILKSIVNTRNASVVIGTTKFYG  4532

Query  597   GWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLA  656
             GW NML+ +   VE+P LMGWDYPKCDRAMPN+LRI ASLVLARKHT CCS S R YRL 
Sbjct  4533  GWDNMLRNLIQGVEDPILMGWDYPKCDRAMPNLLRIAASLVLARKHTNCCSWSERIYRLY  4592

Query  657   NECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA  716
             NECAQVLSE V+  G +YVKPGGTSSGDATTAYANSVFNI QA +ANV  LLS     I 
Sbjct  4593  NECAQVLSETVLATGGIYVKPGGTSSGDATTAYANSVFNIIQATSANVARLLSVITRDIV  4652

Query  717   DKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLV  776
                +++LQ+ LY+ +YR  + D  FV +FY+YL K+FS+MILSDD VVC+N+T A QGLV
Sbjct  4653  YDNIKSLQYELYQQVYRRVNFDPAFVEKFYSYLCKNFSLMILSDDGVVCYNNTLAKQGLV  4712

Query  777   ASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSR  836
             A I  F+ VLYYQNNVFM+++KCW E DL KGPHEFCSQHTMLV+   +  YLPYPDPSR
Sbjct  4713  ADISGFREVLYYQNNVFMADSKCWVEPDLEKGPHEFCSQHTMLVEVDGEPKYLPYPDPSR  4772

Query  837   ILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELT  896
             ILGA  FVDD+ KT+   ++ER+++LAIDAYPL  H N+EY  VF + L YIRKL+ EL+
Sbjct  4773  ILGACVFVDDVDKTEPVAVMERYIALAIDAYPLVHHENEEYKKVFFVLLAYIRKLYQELS  4832

Query  897   GHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
              +ML  YS ++  D  S++WE EFYE MY   T LQ
Sbjct  4833  QNMLMDYSFVMDIDKGSKFWEQEFYENMYRAPTTLQ  4868


>sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious 
bronchitis virus (strain Beaudette) OX=11122 GN=rep PE=1 
SV=1
Length=6629

 Score = 1186 bits (3068),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 582/936 (62%), Positives = 707/936 (76%), Gaps = 13/936 (1%)

Query  5     QSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQE--KDED  62
             +++LNRV G S ARL P  +G   DVV RAFD+ N + AG  + LK NC RFQE    ED
Sbjct  3938  KNYLNRVRGSSEARLIPLASGCDPDVVKRAFDVCNKESAGMFQNLKRNCARFQELRDTED  3997

Query  63    DNL--IDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT  120
              NL  +DSYFVVK+ T SNY+HE++ Y  LK     A HDFF F  +   + +ISRQRLT
Sbjct  3998  GNLEYLDSYFVVKQTTPSNYEHEKSCYEDLKS-EVTADHDFFVFNKN---IYNISRQRLT  4053

Query  121   KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDD---DYFNK-KDWYDFVENPDILRVYA  176
             KYTM D  YALRHFD  +C+ LKEILVTY C +D    +F + KDWYD +EN     + A
Sbjct  4054  KYTMMDFCYALRHFDPKDCEVLKEILVTYGCIEDYHPKWFEENKDWYDPIENSKYYVMLA  4113

Query  177   NLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDS  236
              +G  VR+ALL  ++F + M   G VGV+TLDNQDLNG +YDFGDF +T PG+GVPV D+
Sbjct  4114  KMGPIVRRALLNAIEFGNLMVEKGYVGVITLDNQDLNGKFYDFGDFQKTAPGAGVPVFDT  4173

Query  237   YYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHP  296
             YYS +MPI+ +T AL  E + + D+ K Y  +DLLKYD+TEE+ +LF +YFKYWDQ YHP
Sbjct  4174  YYSYMMPIIAMTDALAPERYFEYDVHKGYKSYDLLKYDYTEEKQELFQKYFKYWDQEYHP  4233

Query  297   NCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHN  356
             NC +C DDRC++HCANFN+LFST+ P TSFG L RK+FVDGVPF+ + GYH +ELGV+ N
Sbjct  4234  NCRDCSDDRCLIHCANFNILFSTLIPQTSFGNLCRKVFVDGVPFIATCGYHSKELGVIMN  4293

Query  357   QDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFN  416
             QD  +  S++   +L+ +  DPA+   + N L+D RT+CFSV ALT+ +  QTVKPG+FN
Sbjct  4294  QDNTMSFSKMGLSQLMQFVGDPALLVGTSNNLVDLRTSCFSVCALTSGITHQTVKPGHFN  4353

Query  417   KDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVV  476
             KDFYDFA   G FKEGSS+ LKHFF+ Q GNAAI+DYDYYRYN PTM DI QLLF +EV 
Sbjct  4354  KDFYDFAEKAGMFKEGSSIPLKHFFYPQTGNAAINDYDYYRYNRPTMFDICQLLFCLEVT  4413

Query  477   DKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVI  536
              KYF+CY+GGCI A+QV+VNNLDKSAG+PFNK+GKARLYY+ MS E+QD LF  TK+NV+
Sbjct  4414  SKYFECYEGGCIPASQVVVNNLDKSAGYPFNKFGKARLYYE-MSLEEQDQLFEITKKNVL  4472

Query  537   PTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYG  596
             PTITQMNLKYAISAKNRARTVAGVSI STMTNRQFHQK+LKSI  TR A+VVIGT+KFYG
Sbjct  4473  PTITQMNLKYAISAKNRARTVAGVSILSTMTNRQFHQKILKSIVNTRNASVVIGTTKFYG  4532

Query  597   GWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLA  656
             GW NML+ +   VE+P LMGWDYPKCDRAMPN+LRI ASLVLARKHT CCS S R YRL 
Sbjct  4533  GWDNMLRNLIQGVEDPILMGWDYPKCDRAMPNLLRIAASLVLARKHTNCCSWSERIYRLY  4592

Query  657   NECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA  716
             NECAQVLSE V+  G +YVKPGGTSSGDATTAYANSVFNI QA +ANV  LLS     I 
Sbjct  4593  NECAQVLSETVLATGGIYVKPGGTSSGDATTAYANSVFNIIQATSANVARLLSVITRDIV  4652

Query  717   DKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLV  776
                +++LQ+ LY+ +YR  + D  FV +FY+YL K+FS+MILSDD VVC+N+T A QGLV
Sbjct  4653  YDNIKSLQYELYQQVYRRVNFDPAFVEKFYSYLCKNFSLMILSDDGVVCYNNTLAKQGLV  4712

Query  777   ASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSR  836
             A I  F+ VLYYQNNVFM+++KCW E DL KGPHEFCSQHTMLV+   +  YLPYPDPSR
Sbjct  4713  ADISGFREVLYYQNNVFMADSKCWVEPDLEKGPHEFCSQHTMLVEVDGEPKYLPYPDPSR  4772

Query  837   ILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELT  896
             ILGA  FVDD+ KT+   ++ER+++LAIDAYPL  H N+EY  VF + L YIRKL+ EL+
Sbjct  4773  ILGACVFVDDVDKTEPVAVMERYIALAIDAYPLVHHENEEYKKVFFVLLAYIRKLYQELS  4832

Query  897   GHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
              +ML  YS ++  D  S++WE EFYE MY   T LQ
Sbjct  4833  QNMLMDYSFVMDIDKGSKFWEQEFYENMYRAPTTLQ  4868


>sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus 
512/2005 OX=693999 GN=rep PE=3 SV=1
Length=6793

 Score = 1184 bits (3063),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 560/929 (60%), Positives = 707/929 (76%), Gaps = 6/929 (1%)

Query  5     QSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN  64
               +LNRV G SAARL P   G+ T  V+RAFD+YN  VA  +KFLK NC R +  D+ D 
Sbjct  4115  SGYLNRVRGSSAARLEPL-NGSDTHHVFRAFDVYNRDVACISKFLKVNCVRLKNLDKHD-  4172

Query  65    LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM  124
                ++++VK+ T S  +HE++IYNL+ DC AVAKHDFF ++    +  ++ RQ LT+YTM
Sbjct  4173  ---AFWIVKKCTKSVMEHEQSIYNLISDCGAVAKHDFFTWKEGRSVYGNVCRQDLTEYTM  4229

Query  125   ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ  184
              DL YALR+FDE NC+TLK+ILV    CD+ YF+ K W+D VEN D+ RVYA LG  V +
Sbjct  4230  MDLCYALRNFDENNCETLKKILVVVGACDESYFDNKLWFDPVENEDVHRVYAKLGTIVAR  4289

Query  185   ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI  244
             A+LK V++CDAM   GIVGV+TLDNQDLNG++YDFGDF+ +  G GVP+  SYYS +MP+
Sbjct  4290  AMLKCVKYCDAMVEQGIVGVITLDNQDLNGDFYDFGDFVTSVKGMGVPICTSYYSYMMPV  4349

Query  245   LTLTRALTAESHVDTDL-TKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLD  303
             + +T  L +E  + +D+  + +  +DLL YDFTE ++ LF++YFK+W QTYHPNC +C D
Sbjct  4350  MGMTNCLASECFIKSDIFGEDFRTFDLLAYDFTEHKVNLFNKYFKHWGQTYHPNCEDCHD  4409

Query  304   DRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHS  363
             + CI+HCANFN LF+T  P T+FGPL RK ++DGVP V + GYHF++LG+V N+D+NLHS
Sbjct  4410  ESCIVHCANFNTLFATTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNKDLNLHS  4469

Query  364   SRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFA  423
             SRL+  ELL + ADP++  AS   L+DKRT CFSVAAL   +  QTVKPG+FN++FYDF 
Sbjct  4470  SRLTINELLQFCADPSLLIASSPALVDKRTVCFSVAALGTGMTNQTVKPGHFNREFYDFL  4529

Query  424   VSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCY  483
              S+GFF+EGS + LKHFFFAQ G+AA+ D+DYYRYN  T+ DI Q   V ++V  YF  Y
Sbjct  4530  RSQGFFEEGSELTLKHFFFAQKGDAAVRDFDYYRYNRTTVLDICQARVVYQIVQCYFGMY  4589

Query  484   DGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMN  543
             +GGCI A +VIVNNL+KSAG+PFNK+GKA LYYDS+SYE+QD L+AYTKRN+IPT+TQ+N
Sbjct  4590  EGGCITAKEVIVNNLNKSAGYPFNKFGKAGLYYDSLSYEEQDDLYAYTKRNIIPTMTQLN  4649

Query  544   LKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLK  603
             LKYAIS K+RARTV GVS+ STMT RQ+HQK LKSI  TRGA+VVIGT+KFYGGW NMLK
Sbjct  4650  LKYAISGKDRARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWDNMLK  4709

Query  604   TVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL  663
             T+  DVENPHLMGWDYPKCDRA+PNM+R++++++L  KH  CCS S R+YRL NE AQVL
Sbjct  4710  TLIKDVENPHLMGWDYPKCDRALPNMIRMISAMILGSKHVNCCSSSDRYYRLCNELAQVL  4769

Query  664   SEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNL  723
             +EMV   G  YVKPGGT+SGDATTAYANSVFNI QA +ANVN LLS D N   +  V+ L
Sbjct  4770  TEMVYSNGGFYVKPGGTTSGDATTAYANSVFNIFQATSANVNRLLSVDSNTCNNIEVKQL  4829

Query  724   QHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFK  783
             Q +LY+C YR+  VD  FV E++ YLRKHFSMMILSDD VVC+NS YA+ G VA +  FK
Sbjct  4830  QRKLYDCCYRSSSVDQSFVEEYFGYLRKHFSMMILSDDGVVCYNSEYAALGYVADLNAFK  4889

Query  784   SVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCF  843
             +VLYYQNNVFMS +KCW E D+ KGPHEFCSQHTM +   D   YLPYPDPSRIL AG F
Sbjct  4890  AVLYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKDGTYYLPYPDPSRILSAGVF  4949

Query  844   VDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMY  903
             VDDIVKTD  +++ER+VSLAIDAYPL+KH N EY  VF + L +++ L+  L   +LD +
Sbjct  4950  VDDIVKTDPVILLERYVSLAIDAYPLSKHDNPEYRRVFTVMLDWVKHLYKTLNQGVLDSF  5009

Query  904   SVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             SV L  D T+++W+  FY +MY   +VLQ
Sbjct  5010  SVTLLEDATAKFWDESFYASMYEQSSVLQ  5038


>sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious 
bronchitis virus (strain M41) OX=11127 GN=rep PE=1 SV=1
Length=6631

 Score = 1182 bits (3057),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 581/936 (62%), Positives = 702/936 (75%), Gaps = 13/936 (1%)

Query  5     QSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQE--KDED  62
             +++LNRV G S ARL P   G   DVV RAFD+ N + AG  + LK NC RFQE    ED
Sbjct  3940  KNYLNRVRGSSEARLIPLANGCDPDVVKRAFDVCNKESAGMFQNLKRNCARFQEVRDTED  3999

Query  63    DNL--IDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT  120
              NL   DSYFVVK+ T SNY+HE+  Y  LK     A HDFF F  +   + +ISRQRLT
Sbjct  4000  GNLEYCDSYFVVKQTTPSNYEHEKACYEDLKS-EVTADHDFFVFNKN---IYNISRQRLT  4055

Query  121   KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDD---DYFNK-KDWYDFVENPDILRVYA  176
             KYTM D  YALRHFD  +C+ LKEILVTY C +D    +F + KDWYD +ENP    + A
Sbjct  4056  KYTMMDFCYALRHFDPKDCEVLKEILVTYGCIEDYHPKWFEENKDWYDPIENPKYYAMLA  4115

Query  177   NLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDS  236
              +G  VR+ALL  ++F + M   G VGV+TLDNQDLNG +YDFGDF +T PG+GVPV D+
Sbjct  4116  KMGPIVRRALLNAIEFGNLMVEKGYVGVITLDNQDLNGKFYDFGDFQKTAPGAGVPVFDT  4175

Query  237   YYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHP  296
             YYS +MPI+ +T AL  E + + D+ K Y  +DLLKYD+TEE+  LF +YFKYWDQ YHP
Sbjct  4176  YYSYMMPIIAMTDALAPERYFEYDVHKGYKSYDLLKYDYTEEKQDLFQKYFKYWDQEYHP  4235

Query  297   NCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHN  356
             NC +C DDRC++HCANFN+LFST+ P TSFG L RK+FVDGVPF+ + GYH +ELGV+ N
Sbjct  4236  NCRDCSDDRCLIHCANFNILFSTLVPQTSFGNLCRKVFVDGVPFIATCGYHSKELGVIMN  4295

Query  357   QDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFN  416
             QD  +  S++   +L+ +  DPA+   + N L+D RT+CFSV AL + +  QTVKPG+FN
Sbjct  4296  QDNTMSFSKMGLSQLMQFVGDPALLVGTSNKLVDLRTSCFSVCALASGITHQTVKPGHFN  4355

Query  417   KDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVV  476
             KDFYDFA   G FKEGSS+ LKHFF+ Q GNAAI+DYDYYRYN PTM DIRQLLF +EV 
Sbjct  4356  KDFYDFAEKAGMFKEGSSIPLKHFFYPQTGNAAINDYDYYRYNRPTMFDIRQLLFCLEVT  4415

Query  477   DKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVI  536
              KYF+CY+GGCI A+QV+VNNLDKSAG+PFNK+GKARLYY+ MS E+QD LF  TK+NV+
Sbjct  4416  SKYFECYEGGCIPASQVVVNNLDKSAGYPFNKFGKARLYYE-MSLEEQDQLFESTKKNVL  4474

Query  537   PTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYG  596
             PTITQMNLKYAISAKNRARTVAGVSI STMTNRQFHQK+LKSI  TR A VVIGT+KFYG
Sbjct  4475  PTITQMNLKYAISAKNRARTVAGVSILSTMTNRQFHQKILKSIVNTRNAPVVIGTTKFYG  4534

Query  597   GWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLA  656
             GW NML+ +   VE+P LMGWDYPKCDRAMPN+LRI ASLVLARKHT CC+ S R YRL 
Sbjct  4535  GWDNMLRNLIQGVEDPILMGWDYPKCDRAMPNLLRIAASLVLARKHTNCCTWSERVYRLY  4594

Query  657   NECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA  716
             NECAQVLSE V+  G +YVKPGGTSSGDATTAYANSVFNI QA +ANV  LLS     I 
Sbjct  4595  NECAQVLSETVLATGGIYVKPGGTSSGDATTAYANSVFNIIQATSANVARLLSVITRDIV  4654

Query  717   DKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLV  776
                +++LQ+ LY+ +YR  + D  FV +FY+YL K+FS+MILSDD VVC+N+T A QGLV
Sbjct  4655  YDDIKSLQYELYQQVYRRVNFDPAFVEKFYSYLCKNFSLMILSDDGVVCYNNTLAKQGLV  4714

Query  777   ASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSR  836
             A I  F+ VLYYQNNVFM+++KCW E DL KGPHEFCSQHTMLV+   +  YLPYPDPSR
Sbjct  4715  ADISGFREVLYYQNNVFMADSKCWVEPDLEKGPHEFCSQHTMLVEVDGEPRYLPYPDPSR  4774

Query  837   ILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELT  896
             IL A  FVDD+ KT+   ++ER+++LAIDAYPL  H N+EY  VF + L YIRKL+ EL+
Sbjct  4775  ILCACVFVDDLDKTESVAVMERYIALAIDAYPLVHHENEEYKKVFFVLLSYIRKLYQELS  4834

Query  897   GHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
              +ML  YS ++  D  S++WE EFYE MY   T LQ
Sbjct  4835  QNMLMDYSFVMDIDKGSKFWEQEFYENMYRAPTTLQ  4870


>sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemic 
diarrhea virus (strain CV777) OX=229032 GN=rep PE=1 SV=1
Length=6781

 Score = 1174 bits (3037),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 556/928 (60%), Positives = 701/928 (76%), Gaps = 6/928 (1%)

Query  6     SFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNL  65
             ++LNRV G SAARL PC  GT T  VYRAFDIYN  VA   KFLK NC R +  D+ D  
Sbjct  4105  AYLNRVRGSSAARLEPC-NGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLKNLDKHD--  4161

Query  66    IDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMA  125
               +++VVKR T S  +HE++IY+ L+ C A+A+HDFF ++    +  ++ R+ LT+YTM 
Sbjct  4162  --AFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKDLTEYTMM  4219

Query  126   DLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQA  185
             DL YALR+FDE NCD LK IL+    C++ YFN K W+D VEN DI RVYA LG  V +A
Sbjct  4220  DLCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALLGTIVARA  4279

Query  186   LLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPIL  245
             +LK V+FCDAM   GIVGV+TLDNQDLNG++YDFGDF  +  G GVP+  SYYS +MP++
Sbjct  4280  MLKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICTSYYSYMMPVM  4339

Query  246   TLTRALTAESHVDTDL-TKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD  304
              +T  L +E  V +D+  + +  +DLL+YDFTE +  LF++YFKYW   YHPNCV+C D+
Sbjct  4340  GMTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPNCVDCSDE  4399

Query  305   RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS  364
             +CI+HCANFN LFST  P T+FGPL RK ++DGVP V + GYHF++LG+V N D+NLHSS
Sbjct  4400  QCIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNNDLNLHSS  4459

Query  365   RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV  424
             RLS  ELL + +DPA+  AS   L+D+RT CFSVAAL   +  QTVKPG+FNK+FYDF +
Sbjct  4460  RLSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGHFNKEFYDFLL  4519

Query  425   SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD  484
              +GFF EGS + LKHFFFAQ  +AA+ D+DYYRYN PT+ DI Q   V ++V +YFD Y+
Sbjct  4520  EQGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQIVQRYFDIYE  4579

Query  485   GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL  544
             GGCI A +V+V NL+KSAG+P NK+GKA LYY+S+SYE+QD L+AYTKRN++PT+TQ+NL
Sbjct  4580  GGCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTMTQLNL  4639

Query  545   KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT  604
             KYAIS K RARTV GVS+ STMT RQ+HQK LKSI  TRGA+VVIGT+KFYGGW NMLK 
Sbjct  4640  KYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWDNMLKN  4699

Query  605   VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS  664
             +   VENP LMGWDYPKCDRA+PNM+R++++++L  KHTTCCS + RF+RL NE AQVL+
Sbjct  4700  LIDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNELAQVLT  4759

Query  665   EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ  724
             E+V   G  Y+KPGGT+SGDATTAYANSVFNI QAV+ANVN LLS D N   +  V+ LQ
Sbjct  4760  EVVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHNLEVKQLQ  4819

Query  725   HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS  784
              +LYEC YR+  VD  FV E+Y YLRKHFSMMILSDD VVC+N+ YAS G VA +  FK+
Sbjct  4820  RKLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVADLNAFKA  4879

Query  785   VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV  844
             VLYYQNNVFMS +KCW E D+ KGPHEFCSQHTM +   +   YLPYPDPSRIL AG FV
Sbjct  4880  VLYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKEGTYYLPYPDPSRILSAGVFV  4939

Query  845   DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS  904
             DD+VKTD  +++ER+VSLAIDAYPL+KH N EY  VF++ L +++ L+  L   +L+ +S
Sbjct  4940  DDVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNAGVLESFS  4999

Query  905   VMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             V L  D+T+++W+  FY  MY    VLQ
Sbjct  5000  VTLLEDSTAKFWDESFYANMYEKSAVLQ  5027


>sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavirus 
229E OX=11137 GN=rep PE=1 SV=1
Length=6758

 Score = 1163 bits (3009),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 546/928 (59%), Positives = 697/928 (75%), Gaps = 6/928 (1%)

Query  6     SFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNL  65
             S+LNRV G SAARL PC  GT  D   RAFD+YN   +   K LK+NC RF+  D+DD  
Sbjct  4073  SYLNRVRGSSAARLEPC-NGTDIDYCVRAFDVYNKDASFIGKNLKSNCVRFKNVDKDD--  4129

Query  66    IDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMA  125
               ++++VKR   S   HE+++YNLLK C AVAKHDFF +     +  ++SRQ LTKYTM 
Sbjct  4130  --AFYIVKRCIKSVMDHEQSMYNLLKGCNAVAKHDFFTWHEGRTIYGNVSRQDLTKYTMM  4187

Query  126   DLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQA  185
             DL +ALR+FDE +C+  KEILV   CC  DYF  K+W+D +EN DI RVYA LG+ V  A
Sbjct  4188  DLCFALRNFDEKDCEVFKEILVLTGCCSTDYFEMKNWFDPIENEDIHRVYAALGKVVANA  4247

Query  186   LLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPIL  245
             +LK V FCD M   G+VGVLTLDNQDLNGN+YDFGDF+   PG G+P   SYYS +MP++
Sbjct  4248  MLKCVAFCDEMVLKGVVGVLTLDNQDLNGNFYDFGDFVLCPPGMGIPYCTSYYSYMMPVM  4307

Query  246   TLTRALTAESHVDTDL-TKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD  304
              +T  L +E  + +D+  + +  +DLLKYDFTE +  LF++YFKYW Q YHP+CV+C D+
Sbjct  4308  GMTNCLASECFMKSDIFGQDFKTFDLLKYDFTEHKEVLFNKYFKYWGQDYHPDCVDCHDE  4367

Query  305   RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS  364
              CILHC+NFN LF+T  P T+FGPL RK+F+DGVP V + GYHF++LG+V N+DVN HS+
Sbjct  4368  MCILHCSNFNTLFATTIPNTAFGPLCRKVFIDGVPVVATAGYHFKQLGLVWNKDVNTHST  4427

Query  365   RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV  424
             RL+  ELL +  DP +  AS   L+DKRT CFSVAAL+  +  QTVKPG+FNK+FYDF  
Sbjct  4428  RLTITELLQFVTDPTLIVASSPALVDKRTVCFSVAALSTGLTSQTVKPGHFNKEFYDFLR  4487

Query  425   SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD  484
             S+GFF EGS + LKHFFF Q G+AAI D+DYYRYN PTM DI Q     +V  +YFDCY+
Sbjct  4488  SQGFFDEGSELTLKHFFFTQKGDAAIKDFDYYRYNRPTMLDIGQARVAYQVAARYFDCYE  4547

Query  485   GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL  544
             GGCI + +V+V NL+KSAG+P NK+GKA LYY+S+SYE+QDA+F+ TKRN++PT+TQ+NL
Sbjct  4548  GGCITSREVVVTNLNKSAGWPLNKFGKAGLYYESISYEEQDAIFSLTKRNILPTMTQLNL  4607

Query  545   KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT  604
             KYAIS K RARTV GVS+ +TMT RQFHQK LKSI ATR ATVVIGT+KFYGGW NMLK 
Sbjct  4608  KYAISGKERARTVGGVSLLATMTTRQFHQKCLKSIVATRNATVVIGTTKFYGGWDNMLKN  4667

Query  605   VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS  664
             + +DV++P LMGWDYPKCDRAMP+M+R++++++L  KH TCC+ S +FYRL+NE AQVL+
Sbjct  4668  LMADVDDPKLMGWDYPKCDRAMPSMIRMLSAMILGSKHVTCCTASDKFYRLSNELAQVLT  4727

Query  665   EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ  724
             E+V   G  Y KPGGT+SGDATTAYANSVFNI QAV++N+N +LS + +   +  V+ LQ
Sbjct  4728  EVVYSNGGFYFKPGGTTSGDATTAYANSVFNIFQAVSSNINCVLSVNSSNCNNFNVKKLQ  4787

Query  725   HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS  784
              +LY+  YRN +VD  FV++FY YL+KHFSMMILSDD+VVC+N TYA  G +A I  FK+
Sbjct  4788  RQLYDNCYRNSNVDESFVDDFYGYLQKHFSMMILSDDSVVCYNKTYAGLGYIADISAFKA  4847

Query  785   VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV  844
              LYYQN VFMS AKCWTE DL+ GPHEFCSQHTM +   +   YLPYPDPSRI+ AG FV
Sbjct  4848  TLYYQNGVFMSTAKCWTEEDLSIGPHEFCSQHTMQIVDENGKYYLPYPDPSRIISAGVFV  4907

Query  845   DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS  904
             DDI KTD  +++ER+VSLAIDAYPL+KHP  EY  VF+  L +++ L+  L   +L+ +S
Sbjct  4908  DDITKTDAVILLERYVSLAIDAYPLSKHPKPEYRKVFYALLDWVKHLNKTLNEGVLESFS  4967

Query  905   VMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             V L +++ S++W+  FY +MY   TVLQ
Sbjct  4968  VTLLDEHESKFWDESFYASMYEKSTVLQ  4995


>sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavirus 
NL63 OX=277944 GN=rep PE=1 SV=1
Length=6729

 Score = 1151 bits (2977),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 549/929 (59%), Positives = 694/929 (75%), Gaps = 8/929 (1%)

Query  6     SFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNL  65
             S+LNR  G SAARL PC  GT  D   RAFDIYN  V+   K LK NC RF+  D    L
Sbjct  4048  SYLNRARGSSAARLEPC-NGTDIDKCVRAFDIYNKNVSFLGKCLKMNCVRFKNAD----L  4102

Query  66    IDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMV-PHISRQRLTKYTM  124
              D YFV+KR T S  +HE+++YNLL    A+A+HDFF ++ DG ++  ++SR  LTKYTM
Sbjct  4103  KDGYFVIKRCTKSVMEHEQSMYNLLNFSGALAEHDFFTWK-DGRVIYGNVSRHNLTKYTM  4161

Query  125   ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ  184
              DLVYA+R+FDE NCD LKE+LV   CCD+ YF+ K WYD VEN DI RVYA+LG+ V +
Sbjct  4162  MDLVYAMRNFDEQNCDVLKEVLVLTGCCDNSYFDSKGWYDPVENEDIHRVYASLGKIVAR  4221

Query  185   ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI  244
             A+LK V  CDAM   G+VGVLTLDNQDLNGN+YDFGDF+ + P  GVP   SYYS +MPI
Sbjct  4222  AMLKCVALCDAMVAKGVVGVLTLDNQDLNGNFYDFGDFVVSLPNMGVPCCTSYYSYMMPI  4281

Query  245   LTLTRALTAESHVDTDLTKPYIK-WDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLD  303
             + LT  L +E  V +D+     K +DLLKYDFTE +  LF++YFK+W   YHPNC +C D
Sbjct  4282  MGLTNCLASECFVKSDIFGSDFKTFDLLKYDFTEHKENLFNKYFKHWSFDYHPNCSDCYD  4341

Query  304   DRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHS  363
             D C++HCANFN LF+T  P T+FGPL RK+F+DGVP V + GYHF++LG+V N+DVN HS
Sbjct  4342  DMCVIHCANFNTLFATTIPGTAFGPLCRKVFIDGVPLVTTAGYHFKQLGLVWNKDVNTHS  4401

Query  364   SRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFA  423
              RL+  ELL +  DP++  AS   L+D+RT CFSVAAL+  +  Q VKPG+FN++FY+F 
Sbjct  4402  VRLTITELLQFVTDPSLIIASSPALVDQRTICFSVAALSTGLTNQVVKPGHFNEEFYNFL  4461

Query  424   VSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCY  483
               +GFF EGS + LKHFFFAQ+G+AA+ D+D+YRYN PT+ DI Q     ++V +YFD Y
Sbjct  4462  RLRGFFDEGSELTLKHFFFAQNGDAAVKDFDFYRYNKPTILDICQARVTYKIVSRYFDIY  4521

Query  484   DGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMN  543
             +GGCI A +V+V NL+KSAG+P NK+GKA LYY+S+SYE+QDALFA TKRNV+PT+TQ+N
Sbjct  4522  EGGCIKACEVVVTNLNKSAGWPLNKFGKASLYYESISYEEQDALFALTKRNVLPTMTQLN  4581

Query  544   LKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLK  603
             LKYAIS K RARTV GVS+ STMT RQ+HQK LKSI  TR ATVVIGT+KFYGGW+NML+
Sbjct  4582  LKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRNATVVIGTTKFYGGWNNMLR  4641

Query  604   TVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL  663
             T+   VENP LMGWDYPKCDRA+PNM+R+++++VL  KH  CC+ + RFYRL NE AQVL
Sbjct  4642  TLIDGVENPMLMGWDYPKCDRALPNMIRMISAMVLGSKHVNCCTATDRFYRLGNELAQVL  4701

Query  664   SEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNL  723
             +E+V   G  Y KPGGT+SGDA+TAYANS+FNI QAV++N+N LLS   +   +  VR+L
Sbjct  4702  TEVVYSNGGFYFKPGGTTSGDASTAYANSIFNIFQAVSSNINRLLSVPSDSCNNVNVRDL  4761

Query  724   QHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFK  783
             Q RLY+  YR   V+  F++++Y YLRKHFSMMILSDD VVC+N  YA  G +A I  FK
Sbjct  4762  QRRLYDNCYRLTSVEESFIDDYYGYLRKHFSMMILSDDGVVCYNKDYAELGYIADISAFK  4821

Query  784   SVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCF  843
             + LYYQNNVFMS +KCW E DLTKGPHEFCSQHTM +   D   YLPYPDPSRIL AG F
Sbjct  4822  ATLYYQNNVFMSTSKCWVEEDLTKGPHEFCSQHTMQIVDKDGTYYLPYPDPSRILSAGVF  4881

Query  844   VDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMY  903
             VDD+VKTD  +++ER+VSLAIDAYPL+KHPN EY  VF++ L +++ L+  L   +L+ +
Sbjct  4882  VDDVVKTDAVVLLERYVSLAIDAYPLSKHPNSEYRKVFYVLLDWVKHLNKNLNEGVLESF  4941

Query  904   SVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             SV L ++   ++W  +FY +MY   T+LQ
Sbjct  4942  SVTLLDNQEDKFWCEDFYASMYENSTILQ  4970


>sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmissible 
gastroenteritis coronavirus (strain Purdue) OX=11151 
GN=rep PE=1 SV=1
Length=6684

 Score = 1142 bits (2953),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 552/929 (59%), Positives = 689/929 (74%), Gaps = 6/929 (1%)

Query  5     QSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN  64
             QS+LNRV G SAARL PC  GT  D V RAFDIYN  VA   KFLKTNC RF+  D+ D 
Sbjct  4004  QSYLNRVRGSSAARLEPC-NGTDPDHVSRAFDIYNKDVACIGKFLKTNCSRFRNLDKHD-  4061

Query  65    LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM  124
                +Y++VKR T +   HE+  YN LKD  AVA+HDFF ++       +++R+ LTKYTM
Sbjct  4062  ---AYYIVKRCTKTVMDHEQVCYNDLKDSGAVAEHDFFTYKEGRCEFGNVARRNLTKYTM  4118

Query  125   ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ  184
              DL YA+R+FDE NC+ LKEILVT   C +++F  KDW+D VEN  I  VYA LG  V  
Sbjct  4119  MDLCYAIRNFDEKNCEVLKEILVTVGACTEEFFENKDWFDPVENEAIHEVYAKLGPIVAN  4178

Query  185   ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI  244
             A+LK V FCDA+   G +GV+TLDNQDLNGN+YDFGDF++T PG G   V SYYS +MP+
Sbjct  4179  AMLKCVAFCDAIVEKGYIGVITLDNQDLNGNFYDFGDFVKTAPGFGCACVTSYYSYMMPL  4238

Query  245   LTLTRALTAESHVDTDL-TKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLD  303
             + +T  L +E+ V +D+    Y ++DLL YDFTE +  LF +YFKYWD+TYHPNC +C  
Sbjct  4239  MGMTSCLESENFVKSDIYGSDYKQYDLLAYDFTEHKEYLFQKYFKYWDRTYHPNCSDCTS  4298

Query  304   DRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHS  363
             D CI+HCANFN LFS   P T+FGPLVRK+ +DGVP VV+ GYHF++LG+V N DV L +
Sbjct  4299  DECIIHCANFNTLFSMTIPMTAFGPLVRKVHIDGVPVVVTAGYHFKQLGIVWNLDVKLDT  4358

Query  364   SRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFA  423
              +LS  +LL +  DP +  AS   LLD+RT CFS+AAL+  + +QTVKPG+FNKDFYDF 
Sbjct  4359  MKLSMTDLLRFVTDPTLLVASSPALLDQRTVCFSIAALSTGITYQTVKPGHFNKDFYDFI  4418

Query  424   VSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCY  483
               +GFF+EGS + LKHFFFAQ G AA++D++YYRYN  T+ DI Q  FV ++V KYF+CY
Sbjct  4419  TERGFFEEGSELTLKHFFFAQGGEAAMTDFNYYRYNRVTVLDICQAQFVYKIVGKYFECY  4478

Query  484   DGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMN  543
             DGGCINA +V+V N DKSAG+P NK+GKARLYY+++SYE+QDALFA TKRNV+PT+TQMN
Sbjct  4479  DGGCINAREVVVTNYDKSAGYPLNKFGKARLYYETLSYEEQDALFALTKRNVLPTMTQMN  4538

Query  544   LKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLK  603
             LKYAIS K RARTV GVS+ STMT RQ+HQK LKSIAATR ATVVIG++KFYGGW NMLK
Sbjct  4539  LKYAISGKARARTVGGVSLLSTMTTRQYHQKHLKSIAATRNATVVIGSTKFYGGWDNMLK  4598

Query  604   TVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL  663
              +  DV+N  LMGWDYPKCDRA+PNM+R+ ++++L  KH  CC+ + RFYRL+NE AQVL
Sbjct  4599  NLMRDVDNGCLMGWDYPKCDRALPNMIRMASAMILGSKHVGCCTHNDRFYRLSNELAQVL  4658

Query  664   SEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNL  723
             +E+V C G  Y KPGGT+SGD TTAYANS FNI QAV+ANVN LL  D N   +  V+++
Sbjct  4659  TEVVHCTGGFYFKPGGTTSGDGTTAYANSAFNIFQAVSANVNKLLGVDSNACNNVTVKSI  4718

Query  724   QHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFK  783
             Q ++Y+  YR+  +D +FV E+++YLRKHFSMMILSDD VVC+N  YA  G VA I  FK
Sbjct  4719  QRKIYDNCYRSSSIDEEFVVEYFSYLRKHFSMMILSDDGVVCYNKDYADLGYVADINAFK  4778

Query  784   SVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCF  843
             + LYYQNNVFMS +KCW E DL+ GPHEFCSQHT+ +   D   YLPYPDPSRIL AG F
Sbjct  4779  ATLYYQNNVFMSTSKCWVEPDLSVGPHEFCSQHTLQIVGPDGDYYLPYPDPSRILSAGVF  4838

Query  844   VDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMY  903
             VDDIVKTD  +M+ER+VSLAIDAYPLTKHP   Y  VF+  L +++ L   L   +LD +
Sbjct  4839  VDDIVKTDNVIMLERYVSLAIDAYPLTKHPKPAYQKVFYTLLDWVKHLQKNLNAGVLDSF  4898

Query  904   SVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             SV +  +   ++W  EFY ++Y   TVLQ
Sbjct  4899  SVTMLEEGQDKFWSEEFYASLYEKSTVLQ  4927


>sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavirus 
(strain FIPV WSU-79/1146) OX=33734 GN=rep PE=1 SV=2
Length=6709

 Score = 1128 bits (2917),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 550/930 (59%), Positives = 686/930 (74%), Gaps = 8/930 (1%)

Query  5     QSFLNRVCGVSAAR-LTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDD  63
             QS+LN  CGV     L PC  GT  D V RAFDIYN  VA   KFLKTNC RF+  D+ D
Sbjct  4029  QSYLNE-CGVLVQLDLEPC-NGTDPDHVSRAFDIYNKDVACIGKFLKTNCSRFRNLDKHD  4086

Query  64    NLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYT  123
                 +Y+VVKR T S   HE+  YN LKD   VA+HDFF ++       +++R+ LTKYT
Sbjct  4087  ----AYYVVKRCTKSVMDHEQVCYNDLKDSGVVAEHDFFLYKEGRCEFGNVARKDLTKYT  4142

Query  124   MADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVR  183
             M DL YA+R+FDE NC+ LKEILVT   C++ +F  KDW+D VEN  I  VYA LG  V 
Sbjct  4143  MMDLCYAIRNFDEKNCEVLKEILVTLGACNESFFENKDWFDPVENEAIHEVYARLGPIVA  4202

Query  184   QALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMP  243
              A+LK V FCDA+   G +G++TLDNQDLNGN+YDFGDF++TTPG G   V SYYS +MP
Sbjct  4203  NAMLKCVAFCDAIVEKGYIGIITLDNQDLNGNFYDFGDFVKTTPGFGCACVTSYYSYMMP  4262

Query  244   ILTLTRALTAESHVDTDL-TKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCL  302
             ++ +T  L +E+ V +D+    Y ++DLL YDFT+ + KLF +YFK+WD+TYHPNC +C 
Sbjct  4263  LMGMTSCLESENFVKSDIYGADYKQYDLLAYDFTDHKEKLFHKYFKHWDRTYHPNCSDCT  4322

Query  303   DDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLH  362
              D CI+HCANFN LFS   P T+FGPLVRK+ +DGVP VV+ GYHF++LG+V N DV L 
Sbjct  4323  SDECIIHCANFNTLFSMTIPSTAFGPLVRKVHIDGVPVVVTAGYHFKQLGIVWNLDVKLD  4382

Query  363   SSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDF  422
             + +LS  +LL +  DP +  AS   LLD+RT CFS+AAL+  V +QTVKPG+FNKDFYDF
Sbjct  4383  TMKLSMTDLLRFVTDPTLLVASSPALLDQRTVCFSIAALSTGVTYQTVKPGHFNKDFYDF  4442

Query  423   AVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDC  482
                +GFF+EGS + LKHFFFAQ G AA++D++YYRYN  T+ DI Q  FV ++V KYF+C
Sbjct  4443  ITERGFFEEGSELTLKHFFFAQGGEAAMTDFNYYRYNRVTVLDICQAQFVYKIVGKYFEC  4502

Query  483   YDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQM  542
             YDGGCINA +V+V N DKSAG+P NK+GKARLYY+++SYE+QDALFA TKRNV+PT+TQM
Sbjct  4503  YDGGCINAREVVVTNYDKSAGYPLNKFGKARLYYETLSYEEQDALFALTKRNVLPTMTQM  4562

Query  543   NLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML  602
             NLKYAIS K RARTV GVS+ STMT RQ+HQK LKSIAATR ATVVIG++KFYGGW NML
Sbjct  4563  NLKYAISGKARARTVGGVSLLSTMTTRQYHQKHLKSIAATRNATVVIGSTKFYGGWDNML  4622

Query  603   KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQV  662
             K +  DV+N  LMGWDYPKCDRA+PNM+R+ ++++L  KH  CC+ S RFYRL+NE AQV
Sbjct  4623  KNLMRDVDNGCLMGWDYPKCDRALPNMIRMASAMILGSKHVGCCTHSDRFYRLSNELAQV  4682

Query  663   LSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRN  722
             L+E+V C G  Y KPGGT+SGD TTAYANS FNI QAV+ANVN LL  D N   +  V++
Sbjct  4683  LTEVVHCTGGFYFKPGGTTSGDGTTAYANSAFNIFQAVSANVNKLLGVDSNACNNVTVKS  4742

Query  723   LQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNF  782
             +Q ++Y+  YR+  +D +FV E+++YLRKHFSMMILSDD VVC+N  YA  G VA I  F
Sbjct  4743  IQRKIYDNCYRSSSIDEEFVVEYFSYLRKHFSMMILSDDGVVCYNKDYADLGYVADINAF  4802

Query  783   KSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGC  842
             K+ LYYQNNVFMS +KCW E DL+ GPHEFCSQHT+ +   D   YLPYPDPSRIL AG 
Sbjct  4803  KATLYYQNNVFMSTSKCWVEPDLSVGPHEFCSQHTLQIVGPDGDYYLPYPDPSRILSAGV  4862

Query  843   FVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDM  902
             FVDDIVKTD  +M+ER+VSLAIDAYPLTKHP   Y  VF+  L +++ L   L   +LD 
Sbjct  4863  FVDDIVKTDNVIMLERYVSLAIDAYPLTKHPKPAYQKVFYTLLDWVKHLQKNLNAGVLDS  4922

Query  903   YSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             +SV +  +   ++W  EFY ++Y   TVLQ
Sbjct  4923  FSVTMLEEGQDKFWSEEFYASLYEKSTVLQ  4952


>sp|Q9WQ77|R1AB_CVRSD Replicase polyprotein 1ab (Fragment) OS=Rat 
coronavirus (strain 681) OX=33740 GN=rep PE=3 SV=1
Length=307

 Score = 483 bits (1242),  Expect = 2e-163, Method: Compositional matrix adjust.
 Identities = 225/307 (73%), Positives = 266/307 (87%), Gaps = 0/307 (0%)

Query  506  FNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICST  565
            FNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+TQMNLKYAISAKNRARTVAGVSI ST
Sbjct  1    FNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNLKYAISAKNRARTVAGVSILST  60

Query  566  MTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRA  625
            MT R FHQK LKSIAATRG  VVIGT+KFYGGW +ML+ +  DV++P LMGWDYPKCDRA
Sbjct  61   MTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRRLIKDVDSPVLMGWDYPKCDRA  120

Query  626  MPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDA  685
            MPN+LRI++SLVLARKH +CCS + RFYRLANECAQVLSE+VMCGG  YVKPGGTSSGDA
Sbjct  121  MPNILRIVSSLVLARKHDSCCSHTDRFYRLANECAQVLSEIVMCGGCYYVKPGGTSSGDA  180

Query  686  TTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEF  745
            TTA+ANSVFNICQAV+ANV +L++ +G+KI D  +R LQ RLY  +YR   VD  FV+E+
Sbjct  181  TTAFANSVFNICQAVSANVCSLMACNGHKIEDLSIRELQKRLYSNVYRADHVDPAFVSEY  240

Query  746  YAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDL  805
            Y +L KHFSMMILSDD VVC+NS +AS+G +A+I  F+ VLYYQNNVFMSEAKCW ETD+
Sbjct  241  YEFLNKHFSMMILSDDGVVCYNSEFASKGYIANISAFQQVLYYQNNVFMSEAKCWVETDI  300

Query  806  TKGPHEF  812
             KGPHEF
Sbjct  301  EKGPHEF  307


>sp|Q9WQ76|R1AB_CVTMI Replicase polyprotein 1ab (Fragment) OS=Turkey 
coronavirus (strain Minnesota) OX=231430 GN=rep PE=3 
SV=1
Length=306

 Score = 444 bits (1142),  Expect = 2e-148, Method: Compositional matrix adjust.
 Identities = 213/307 (69%), Positives = 248/307 (81%), Gaps = 1/307 (0%)

Query  506  FNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICST  565
            FNK+GKARLYY+ MS E+QD LF  TK+NV+PTITQMNLKYAISAKNRARTVAGVSI ST
Sbjct  1    FNKFGKARLYYE-MSLEEQDQLFESTKKNVLPTITQMNLKYAISAKNRARTVAGVSILST  59

Query  566  MTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRA  625
            MTNRQFHQK+LKSI  TR A VVIGT+KFYGGW NML+ +   VE+P LMGWDYPKCDRA
Sbjct  60   MTNRQFHQKILKSIVNTRNAPVVIGTTKFYGGWDNMLRNLIQGVEDPILMGWDYPKCDRA  119

Query  626  MPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDA  685
            MPN+LRI ASLVLARKHT CC+ S R YRL NECAQVLSE V+  G +YVKPGGTSSGDA
Sbjct  120  MPNLLRITASLVLARKHTNCCTWSERIYRLYNECAQVLSETVLATGGIYVKPGGTSSGDA  179

Query  686  TTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEF  745
            TTAYANSVFNI QA +ANV  LLS     I    +++LQ+ LY+ +YR  + D  FV +F
Sbjct  180  TTAYANSVFNIIQATSANVARLLSVITRDIVYDDIKSLQYELYQQVYRRVNFDPAFVEKF  239

Query  746  YAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDL  805
            Y+YL K+FS+MI +DD VVC+N+T A QGLVA I  F+ +LYYQNNV+M+++KCW E DL
Sbjct  240  YSYLCKNFSLMIFADDGVVCYNNTLAKQGLVADISGFREILYYQNNVYMADSKCWVEPDL  299

Query  806  TKGPHEF  812
             KGPHEF
Sbjct  300  EKGPHEF  306


>sp|P0C6V7|R1AB_BEV Replicase polyprotein 1ab OS=Berne virus OX=11156 
GN=rep PE=1 SV=1
Length=6857

 Score = 131 bits (329),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 121/489 (25%), Positives = 219/489 (45%), Gaps = 46/489 (9%)

Query  419   FYDFAVSKGFFKEGSSV--ELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVV  476
             FYD  + +     G       K+F++  +   A++D  YY Y        + L  V + +
Sbjct  4909  FYDVGLCQELTDAGVDCGEAFKYFYYLSNPAGALADVCYYDYQGTGFYSPKLLAGVYDFM  4968

Query  477   DKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWG-KARLYYDSMSYEDQDALFAYTKRNV  535
              +  +CY    IN          + +    N  G +    Y ++  E+   LF Y ++  
Sbjct  4969  KRVTECYR---INERFTYEQAKPRKSSMGINITGYQQDAVYRALGPENIARLFEYAQKAP  5025

Query  536   IPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKL---LKSIAATRGATVVIGTS  592
             +P  T++  K+A+SAK RARTV+  S  ++   R  H+ +   +  +A   G   +IG S
Sbjct  5026  LPFCTKIITKFALSAKARARTVSSCSFIASTIFRFAHKPVTSKMVEVAQNSGGFCLIGVS  5085

Query  593   KFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRF  652
             K+   +   LK  Y  +E   + G DY KCDR  P   R + + +L            + 
Sbjct  5086  KYGLKFSKFLKDKYGAIEGFDVFGSDYTKCDRTFPLSFRALTAALLYE----LGEWDEKS  5141

Query  653   YRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLS--T  710
             +   NE    + + ++C G L  KPGGTSSGDATTA++N+ +N           +LS  +
Sbjct  5142  WLYLNEVNSYMLDTMLCDGMLLNKPGGTSSGDATTAHSNTFYNYMVHYVVAFKTILSDLS  5201

Query  711   DGNKIADKYVRNL----QHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCF  766
             +GNK+      N      ++++  L  ++     F+N              LSDD+ + F
Sbjct  5202  EGNKVMRIAAHNAYTTGDYQVFNTLLEDQFQTNYFLN-------------FLSDDSFI-F  5247

Query  767   NSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGP-HEFCSQHTMLVKQGDD  825
             +   A +  + + +NF + L    +  + + K W+    TKG   EFCS H  ++K   +
Sbjct  5248  SKPEALK--IFTCENFSNKLQTILHTKVDQTKSWS----TKGHIEEFCSAH--IIKTDGE  5299

Query  826   YVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYL  885
             Y +L  P   R+L +   +D +   D   M  RFV++  ++   +++  + +  +F ++L
Sbjct  5300  YHFL--PSRGRLLASLLILDKLSDVDIYYM--RFVAILCESAVYSRYQPEFFNGLFQVFL  5355

Query  886   QYIRKLHDE  894
               +++   +
Sbjct  5356  DKVQQFRKD  5364


 Score = 42.4 bits (98),  Expect = 0.025, Method: Compositional matrix adjust.
 Identities = 43/156 (28%), Positives = 68/156 (44%), Gaps = 32/156 (21%)

Query  79    NYQHEETIYNLLKDCP--AVAKHDFFKFRIDGDMVPH----------ISRQRLTKYTMAD  126
              YQ +  +   +KD    A+AK  F        ++PH          + R   +++++ D
Sbjct  4618  EYQSKRFMIKRVKDQSEFALAKTAFLP-----SIIPHHMEKQNGEWFLIRGPTSQWSLGD  4672

Query  127   LVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQAL  186
             LVYA+   D+   D L E    +N   D++ +  +   F+         ANL E    A+
Sbjct  4673  LVYAIWLGDQ---DYLSECGFVFNPSRDEFLDDANQRSFL---------ANLLE---PAI  4717

Query  187   LKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDF  222
             L        ++   +   LTLDN DLNG  YDFGD+
Sbjct  4718  LNFSHIYWQVKMCKVPYKLTLDNVDLNGQLYDFGDY  4753


>sp|P0C6V8|R1AB_BRV1 Replicase polyprotein 1ab OS=Breda virus 
1 OX=360393 GN=rep PE=2 SV=1
Length=6733

 Score = 117 bits (292),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 114/468 (24%), Positives = 204/468 (44%), Gaps = 42/468 (9%)

Query  437   LKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVN  496
              K+F++  +   A++D  +Y Y        + L  V + + +   CY     +       
Sbjct  4805  FKYFYYLSNPAGALADVCFYDYQGTGFYSPKLLAGVYDFMKRVTTCYK---TDERFTYEQ  4861

Query  497   NLDKSAGFPFNKWG-KARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRAR  555
                + +    N  G +    Y ++  E+   LF Y ++  +P  T++  K+A+SAK RAR
Sbjct  4862  AKPRKSSMGINITGYQQDAVYRALGPENITKLFEYAQKAPLPFCTKIITKFALSAKARAR  4921

Query  556   TVAGVSICSTMTNRQFHQKL---LKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENP  612
             TV+  S  ++   R  H+ +   +  +A       +IG SK+   +   LK  Y  +E  
Sbjct  4922  TVSSCSFIASTIFRFAHKPVTSKMVEVAQNSQGFCLIGVSKYGLKFSKFLKDKYGAIEQF  4981

Query  613   HLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGS  672
              + G DY KCDR  P   R + + +L              +   NE    + + ++C G 
Sbjct  4982  DVFGSDYTKCDRTFPLSFRALTAALLYELG----GWEEDSWLYLNEVNSYMLDTMLCDGM  5037

Query  673   LYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLS--TDGNKIADKYVRNLQHRLYEC  730
             L  KPGGTSSGDATTA++N+ +N           +LS  +D NK+    +R   H  Y  
Sbjct  5038  LLNKPGGTSSGDATTAHSNTFYNYMVHYVVAFKTILSDLSDCNKV----MRIAAHNAYT-  5092

Query  731   LYRNRDVDTDFVNEFYAYLRKHFS----MMILSDDAVVCFNSTYASQGLVASIKNFKSVL  786
                     T     F   L + F     +  LSDD+ + F+   A +  + + +NF + L
Sbjct  5093  --------TGDYGVFNTLLEEQFQTNYFLNFLSDDSFI-FSKPGALK--IFTCENFSNKL  5141

Query  787   YYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDD  846
                 +  +   K W  T   +   EFCS H  ++K   +Y +L  P   R+L +   +D 
Sbjct  5142  QTILHTKVDLTKSWATTGHIE---EFCSAH--IIKTDGEYHFL--PSRGRLLASLLILDK  5194

Query  847   IVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDE  894
             +   D   M  RFV++  ++   +++  + +  +F ++L  +++   +
Sbjct  5195  LSDVDIYYM--RFVAILCESAVYSRYQPEFFNGLFQVFLDKVQQFRKD  5240


 Score = 41.2 bits (95),  Expect = 0.068, Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 20/133 (15%)

Query  95    AVAKHDFFKFRIDGDMVPH-----ISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTY  149
             A+A+  F    I   MV       + R   T++++ DLVYA+   D+   D   E    +
Sbjct  4512  ALARTAFLPSIIPHHMVHQNGEWFLVRGPTTQWSLGDLVYAIWLGDQAYLD---ECGFVF  4568

Query  150   NCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDN  209
             N   D++ +  +   ++         ANL E    A+L   +    ++   +   +TLDN
Sbjct  4569  NPSRDEFLDDANQRSYL---------ANLLE---PAILSFCEIFHCVKGCQVPYKITLDN  4616

Query  210   QDLNGNWYDFGDF  222
              DL G  YDFGD+
Sbjct  4617  LDLKGQLYDFGDY  4629


>sp|F8RL29|R1AB_AMV79 Replicase polyprotein 1ab OS=Alphamesonivirus 
1 (isolate Aedes harrisoni/Cote d'Ivoire/C79/2004) OX=1552985 
GN=pp1ab PE=1 SV=1
Length=5088

 Score = 105 bits (262),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 115/449 (26%), Positives = 190/449 (42%), Gaps = 68/449 (15%)

Query  491   NQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISA  550
             ++V V N  KSAG P+ K+G +  +   +    +DA+  + + +    +T    K A S 
Sbjct  3101  SEVPVRNKHKSAGTPYRKFGDSE-FMRELYGNYRDAIVYHKRHSADQQLTLTINKVAPSK  3159

Query  551   KNRARTVAGVSICSTMTNRQFHQKLLKSIAATR--GATVVIGTSKFYGGWHNMLKTVYSD  608
              +R RT+  +SI  +   R  ++  L  I  T   G  ++IG +  YGGW  + K +Y +
Sbjct  3160  NHRDRTILAISINKSEPGRSLYRWNLDKIKYTSSLGGPILIGFTAQYGGWDKLYKYLYKN  3219

Query  609   VENPH--------LMGWDYPKCDRAMPNMLRIMASLVL-------ARKHTTCCSLSHRFY  653
                 H        L G DYPK DR + NML++  + VL        +      + +  ++
Sbjct  3220  SPADHPDIAEHAVLGGKDYPKWDRRISNMLQLTTTTVLYSLIDPNTQSKLNNATPAQTWH  3279

Query  654   RLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFN-----------ICQAVTA  702
                 E  QVL + ++ G  LY KPGG +SG++ TA  NS+ +           + Q+   
Sbjct  3280  EYMAETTQVLFDYLVFGNELYQKPGGVTSGNSRTADGNSLLHLLIDFYAIISQLIQSTPE  3339

Query  703   NV-------NALLSTDGNKIADKYVRNLQHRLYECL-YRNRDVDTDFVNEFYAYLRKHFS  754
             NV       NAL  T   KI   Y+ +       C+  RN D+        +   R+   
Sbjct  3340  NVHLEVNLRNALCKTVFTKIPSDYIDS------SCVTLRNTDI-------LHTIRRRVAK  3386

Query  755   MMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETD-LTKGPHEFC  813
                LSDD ++  +        +    +F SV +  ++  +++ K     D + +   EF 
Sbjct  3387  GAYLSDDGLIVIDPR------IIRYDDFMSVSHLISHYMIAQNKHKYHIDAIQRYAREFL  3440

Query  814   SQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAY------  867
             SQ T  +K G D VY P P+  R+  A    D+    D  + I R ++L    Y      
Sbjct  3441  SQDT--IKFG-DMVY-PIPEFGRMYTAMLLSDNKNTLDPQINITRLLALFSYLYIYYFKY  3496

Query  868   -PLTKHPNQEYADVFHLYLQYIRKLHDEL  895
                  HP  ++ D    Y++      DE+
Sbjct  3497  VDQPTHPILKFLDALRTYIELKLNTTDEI  3525


>sp|Q008X6|R1AB_WBV24 Replicase polyprotein 1ab OS=White bream 
virus (isolate Blicca bjoerkna L./Germany/DF24/00) OX=766180 
GN=rep PE=1 SV=1
Length=6872

 Score = 100 bits (248),  Expect = 6e-20, Method: Compositional matrix adjust.
 Identities = 113/448 (25%), Positives = 188/448 (42%), Gaps = 56/448 (13%)

Query  415   FNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNA--AISDYDYYRYNLPTMCDIRQLLFV  472
             + + FYD  + +     G ++     +  Q G    A+ D+ YY YN P   D   L  V
Sbjct  4888  YKRPFYDLDLIQRMNSAGLNLSETTGYHYQCGTTTEAVEDFMYYNYNSPKSFDPSYLKSV  4947

Query  473   VEVV-DKYFDCYDGGCINANQVIVNNLDKSAGFP-FNKWGKA------RLYYDSMSYEDQ  524
                + DK+        I+ ++     L+  +G P  +  G        +  ++++  +  
Sbjct  4948  YTYMRDKFMKI-----ISTDE----KLNHQSGAPRMSSMGVGVSGFFQKTVWNALPEDFS  4998

Query  525   DALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRG  584
               L     + V+P  T +  K+    K R RT+ G S  ++   R  H+ +   +  T  
Sbjct  4999  PRLLDTASKTVMPFSTNIVKKFQRQKKTRVRTLGGSSFITSSIFRMLHKPVTNKMVQTAQ  5058

Query  585   ATV---VIGTSKFYGGWHNMLKTVYSD-VENPHLMGWDYPKCDRAMPNMLRIM-ASLVLA  639
             A +   +IG SKF  G+H  L   + + +E+  +MG DY KCDR+ P + R + A+L   
Sbjct  5059  ANIGPFLIGISKFNLGFHKYLSAHHPNGIEDCQVMGADYTKCDRSFPVVCRALSAALFYE  5118

Query  640   RKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQA  699
               H     L    +   NE    L +     G ++ KPGGT+SGD+TTA++NS +N    
Sbjct  5119  LGH-----LEPNNHWFLNEMFAFLLDPSFISGHIFNKPGGTTSGDSTTAFSNSFYNYFVH  5173

Query  700   VTANVNALLSTDGNKIADKYVRNLQHRLYEC-------LYRNRDVDTDFVNEFYAYLRKH  752
             +       L+T+    + + + NL H+ +         LY +   D +    F      H
Sbjct  5174  LYIQYLTFLTTEMPP-SYQPLCNLAHQAFSTGNTETYDLYFSMADDLNSTEYFL-----H  5227

Query  753   FSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEF  812
             F    LSDD+ +    T      + +  NF   L      ++  AK W+        HEF
Sbjct  5228  F----LSDDSFIISKPTAFP---IFTPANFSMKLQNVLGCYVDPAKSWSADGEI---HEF  5277

Query  813   CSQHTMLVKQGDDYVYLPYPDPSRILGA  840
             CS H   + +   YV    PDP+ +L  
Sbjct  5278  CSSHICKINEKYQYV----PDPNNMLAG  5301


 Score = 50.1 bits (118),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 76/191 (40%), Gaps = 35/191 (18%)

Query  35    FDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIY---NLLK  91
              +I N+ VA   K  K N      ++    L D+             HE  IY    LL 
Sbjct  4581  INILNNNVASLRKVFKKNTASIPSENGTIMLKDT----------GTAHE--IYVAKQLLA  4628

Query  92    DCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNC  151
                 V +H     R + D   ++ R   T Y++ DLVYA    D       K +L+  + 
Sbjct  4629  KGLPVLQHA----RFNHDGTDYLIRYYTTPYSLGDLVYAYMVGD------FKHMLLALDI  4678

Query  152   CDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQD  211
              D+   +  ++            Y N  E++R  L   +   + +  A +   +TLDN D
Sbjct  4679  TDETCLDPGNYSS----------YYNFKEQLRNKLASVIPNVNKILAAELPLAITLDNID  4728

Query  212   LNGNWYDFGDF  222
             LNG  YDFGD+
Sbjct  4729  LNGFLYDFGDY  4739


>sp|Q68772|RPOA_SHFV Replicase polyprotein 1ab OS=Simian hemorrhagic 
fever virus OX=38143 GN=rep PE=2 SV=4
Length=3595

 Score = 49.3 bits (116),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 68/286 (24%), Positives = 119/286 (42%), Gaps = 33/286 (12%)

Query  441   FFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVI-----V  495
             ++ Q G  A +  D  ++NL T   I  L  V+ +V  Y      G I     I     V
Sbjct  2333  YYTQHGCEAAALQDLKKFNLSTQGFI--LPEVLNIVRNYLL----GTIGYRPAIYKPSTV  2386

Query  496   NNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRAR  555
              + D  AG     +    L     +  D D L       V  T+T + LK    +K + R
Sbjct  2387  PSNDSHAGINGLSFSTKTL----QALPDIDELCEKAIAEVWQTVTPVTLKKQFCSKAKTR  2442

Query  556   TVAGVSICSTMTNRQFHQKLLKSIA-ATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHL  614
             T+ G +  +++  R     + +    A + + + +G SKF             +V+    
Sbjct  2443  TILGTNAMASLALRALLSGVTQGFQLAGKNSPICLGKSKF--------DPCTFEVKG-RC  2493

Query  615   MGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLY  674
             +  D   CDR+ P ++R  A+ +L      C   +   Y + N C     ++++   S  
Sbjct  2494  LETDLASCDRSTPAIVRHFATKLLF--EMACAERALPLY-VVNCC----HDLIVTQTSAA  2546

Query  675   VKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV  720
              K GG SSGD  T+ AN+++++   V   V  LL  +G+ ++ K++
Sbjct  2547  TKRGGLSSGDPVTSIANTIYSLVLYVQHMVLTLLE-NGHPLSLKFL  2591


>sp|Q9WJB2|RPOA_PRRSR Replicase polyprotein 1ab OS=Porcine reproductive 
and respiratory syndrome virus (strain VR-2332) OX=300559 
GN=rep PE=1 SV=2
Length=3960

 Score = 47.4 bits (111),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 59/248 (24%), Positives = 105/248 (42%), Gaps = 30/248 (12%)

Query  454   DYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKS-AGFPFNKWGKA  512
             D  +Y+L T   +  L  V+ +V KY   + G C   ++        S AG   N++   
Sbjct  2744  DLSKYDLSTQGFV--LPGVLRLVRKYLFAHVGKCPPVHRPSTYPAKNSMAGINGNRFPTK  2801

Query  513   RLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFH  572
                 D  S  + D L A   R    T+T   LK     K + RT+ G +    + +R   
Sbjct  2802  ----DIQSVPEIDVLCAQAVRENWQTVTPCTLKKQYCGKKKTRTILGTNNFIALAHRAVL  2857

Query  573   QKLLKS-IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHL---MGWDYPKCDRAMPN  628
               + +  +     + + +G +KF             +++ P L   +  D   CDR+ P 
Sbjct  2858  SGVTQGFMKKAFNSPIALGKNKF------------KELQTPVLGRCLEADLASCDRSTPA  2905

Query  629   MLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTA  688
             ++R  A+ +L   +   C+  H    + N C  +L   V   G++  K GG SSGD  T+
Sbjct  2906  IVRWFAANLL---YELACAEEHLPSYVLNCCHDLL---VTQSGAV-TKRGGLSSGDPITS  2958

Query  689   YANSVFNI  696
              +N+++++
Sbjct  2959  VSNTIYSL  2966


>sp|A6YQT5|RPOA_PRRSV Replicase polyprotein 1ab OS=Porcine reproductive 
and respiratory syndrome virus OX=28344 PE=1 SV=2
Length=3931

 Score = 46.6 bits (109),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 104/247 (42%), Gaps = 28/247 (11%)

Query  454   DYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKS-AGFPFNKWGKA  512
             D  +Y+L T   +  L  V+ +V KY   + G C   ++        S AG   N++   
Sbjct  2715  DLSKYDLSTQGFV--LPGVLRLVRKYLFAHVGKCPPVHRPSTYPAKNSMAGINGNRFPTK  2772

Query  513   RLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFH  572
                 D  S  + D L A   R    T+T   LK     K + RT+ G +    + +R   
Sbjct  2773  ----DIQSVPEIDVLCAQAVRENWQTVTPCTLKKQYCGKKKTRTILGTNNFIALAHR---  2825

Query  573   QKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHL---MGWDYPKCDRAMPNM  629
                    AA  G T      K +     + K  + +++ P L   +  D   CDR+ P +
Sbjct  2826  -------AALSGVTQGF-MKKAFNSPIALGKNKFKELQAPVLGRCLEADLASCDRSTPAI  2877

Query  630   LRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAY  689
             +R  A+ +L   +   C+  H    + N C  +L   V   G++  K GG SSGD  T+ 
Sbjct  2878  VRWFAANLL---YELACAEEHLPSYVLNCCHDLL---VTQSGAV-TKRGGLSSGDPITSV  2930

Query  690   ANSVFNI  696
             +N+++++
Sbjct  2931  SNTIYSL  2937


>sp|Q8B912|RPOA_PRRSB Replicase polyprotein 1ab OS=Porcine reproductive 
and respiratory syndrome virus (strain HB-1) OX=300563 
GN=rep PE=2 SV=3
Length=3961

 Score = 46.2 bits (108),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 104/247 (42%), Gaps = 28/247 (11%)

Query  454   DYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKS-AGFPFNKWGKA  512
             D  +Y+L T   +  L  V+ +V KY   + G C   ++        S AG   N++   
Sbjct  2745  DLSKYDLVTQGFV--LPGVLRLVRKYLFAHVGKCPPVHRPSTYPAKNSMAGINGNRFPTK  2802

Query  513   RLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFH  572
                 D  S  + D L A   R    T+T   LK     K + RT+ G +    + +R   
Sbjct  2803  ----DIQSVPEIDVLCAQAVRENWQTVTPCTLKKQYCGKKKTRTILGTNNFIALAHR---  2855

Query  573   QKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHL---MGWDYPKCDRAMPNM  629
                    AA  G T      K +     + K  + +++ P L   +  D   CDR+ P +
Sbjct  2856  -------AALSGVTQGF-MKKAFNSPIALGKNKFKELQTPVLGRCLEADLASCDRSTPAI  2907

Query  630   LRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAY  689
             +R  A+ +L   +   C+  H    + N C  +L   V   G++  K GG SSGD  T+ 
Sbjct  2908  VRWFAANLL---YELACAEEHLPSYVLNCCHDLL---VTQSGAV-TKRGGLSSGDPITSV  2960

Query  690   ANSVFNI  696
             +N+++++
Sbjct  2961  SNTIYSL  2967


>sp|Q9YN02|RPOA_PRRS1 Replicase polyprotein 1ab OS=Porcine reproductive 
and respiratory syndrome virus (strain 16244B) OX=300561 
GN=rep PE=1 SV=3
Length=3961

 Score = 46.2 bits (108),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 104/245 (42%), Gaps = 24/245 (10%)

Query  454   DYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKS-AGFPFNKWGKA  512
             D  +Y+L T   +  L  V+ +V KY   + G C   ++        S AG   N++   
Sbjct  2745  DLSKYDLSTQGFV--LPGVLRLVRKYLFAHVGKCPPVHRPSTYPAKNSMAGINGNRFPTK  2802

Query  513   RLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFH  572
                 D  S  + D L A   R    T+T   LK     K + RT+ G +    + +R   
Sbjct  2803  ----DIQSVPEIDVLCAQAVRENWQTVTPCTLKKQYCGKKKTRTILGTNNFIALAHRAAL  2858

Query  573   QKLLKS-IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLR  631
               + +  +     + + +G +KF        K + + V    L   D   CDR+ P ++R
Sbjct  2859  SGVTQGFMKKAFNSPIALGKNKF--------KELQTSVLGRCLEA-DLASCDRSTPAIVR  2909

Query  632   IMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYAN  691
               A+ +L   +   C+  H    + N C  +L   V   G++  K GG SSGD  T+ +N
Sbjct  2910  WFAANLL---YELACAEEHLPSYVLNCCHDLL---VTQSGAV-TKRGGLSSGDPITSVSN  2962

Query  692   SVFNI  696
             +++++
Sbjct  2963  TIYSL  2967


>sp|P18479|POLG_ZYMVC Genome polyprotein OS=Zucchini yellow mosaic 
virus (strain California) OX=117128 PE=1 SV=2
Length=3080

 Score = 38.9 bits (89),  Expect = 0.30, Method: Compositional matrix adjust.
 Identities = 57/270 (21%), Positives = 111/270 (41%), Gaps = 48/270 (18%)

Query  454   DYYRYNLPT---MCDIRQLLFVVEVVDKY---FDCYDGGCINANQVIVNNLDKSAGFPFN  507
             D+++YN P      D  + L  V+ V +    F+  +   I   + I N+L+  A     
Sbjct  2356  DFFKYNKPVTVNQLDHDKFLGAVDGVIRMMCDFEFNECRFITDPEEIYNSLNMKAAIGAQ  2415

Query  508   KWGKARLYYDSMS-YEDQDALFAYTKR--NVIPTITQMNLKYAISAKNRAR---------  555
               GK + Y++ +  ++ +  LF   +R  N    +   +LK  +    + R         
Sbjct  2416  YRGKKKEYFEGLDDFDRERLLFQSCERLFNGYKGLWNGSLKAELRPLEKVRANKTRTFTA  2475

Query  556   ----TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVEN  611
                 T+ G  +C    N +F++K LK           +G +KFYGGW  +++++      
Sbjct  2476  APIDTLLGAKVCVDDFNNEFYRKNLK-------CPWTVGMTKFYGGWDKLMRSLPD----  2524

Query  612   PHLMGWDYPKCDRAM------PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL-S  664
                 GW Y   D +       P +L   A L++   +     +      L N  A+++ +
Sbjct  2525  ----GWLYCHADGSQFDSSLTPALLN--AVLIIRSFYMEDWWVGQEM--LENLYAEIVYT  2576

Query  665   EMVMCGGSLYVKPGGTSSGDATTAYANSVF  694
              ++   G+++ K  G +SG  +T   N++ 
Sbjct  2577  PILAPDGTIFKKFRGNNSGQPSTVVDNTLM  2606


>sp|Q04561|RPOA_PRRSL Replicase polyprotein 1ab OS=Porcine reproductive 
and respiratory syndrome virus (strain Lelystad) OX=11049 
GN=rep PE=1 SV=3
Length=3855

 Score = 38.5 bits (88),  Expect = 0.40, Method: Compositional matrix adjust.
 Identities = 54/259 (21%), Positives = 98/259 (38%), Gaps = 58/259 (22%)

Query  517   DSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLL  576
             D  S  + D + A   +    T+T   LK    +K + RT+ G +    + +R     + 
Sbjct  2696  DVQSIPEIDEMCARAVKENWQTVTPCTLKKQYCSKPKTRTILGTNNFIALAHRSALSGVT  2755

Query  577   KS-IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMAS  635
             ++ +     + + +G +KF        K ++  V    L   D   CDR+ P ++R   +
Sbjct  2756  QAFMKKAWKSPIALGKNKF--------KELHCTVAGRCLEA-DLASCDRSTPAIVRWFVA  2806

Query  636   LVLARKHTTCCSLSHRFYRLANECAQVLS--------EMVMCGGSLYVKPGGTSSGDATT  687
              +L              Y LA  C + L         ++V      + K GG SSGD  T
Sbjct  2807  NLL--------------YELAG-CEEYLPSYVLNCCHDLVATQDGAFTKRGGLSSGDPVT  2851

Query  688   AYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYA  747
             + +N+V+++                       V   QH +   L    ++   F+ E   
Sbjct  2852  SVSNTVYSL-----------------------VIYAQHMVLSALKMGHEIGLKFLEEQLK  2888

Query  748   Y--LRKHFSMMILSDDAVV  764
             +  L +   M++ SDD V+
Sbjct  2889  FEDLLEIQPMLVYSDDLVL  2907


>sp|Q06502|RPOA_LDVC Replicase polyprotein 1ab OS=Lactate dehydrogenase 
elevating virus (strain C) OX=300015 GN=rep PE=3 SV=2
Length=3637

 Score = 38.1 bits (87),  Expect = 0.48, Method: Compositional matrix adjust.
 Identities = 45/181 (25%), Positives = 74/181 (41%), Gaps = 23/181 (13%)

Query  520   SYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKS-  578
             S+ D DAL     +    T+T   LK    +K + RT+ G +    +  R     + +  
Sbjct  2527  SHPDIDALCERACKEHWQTVTPCTLKKQYCSKAKTRTILGTNNFVALGLRSALSGVTQGF  2586

Query  579   IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMAS---  635
             +    G+ + +G +KF       L T  S       +  D   CDR+ P ++R   +   
Sbjct  2587  MRKGIGSPICLGKNKF-----TPLPTKVSG----RCLEADLASCDRSTPAIIRWFTTNLL  2637

Query  636   LVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFN  695
               LA       S       + N C   +S M  C    + K GG SSGD  T+ +N+V++
Sbjct  2638  FELAGPEEWIPSY------VLNCCHDAVSTMSGC----FDKRGGLSSGDPVTSVSNTVYS  2687

Query  696   I  696
             +
Sbjct  2688  L  2688


>sp|C4LCH1|UXUA_TOLAT Mannonate dehydratase OS=Tolumonas auensis 
(strain DSM 9187 / NBRC 110442 / TA 4) OX=595494 GN=uxuA 
PE=3 SV=1
Length=393

 Score = 37.4 bits (85),  Expect = 0.57, Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 49/103 (48%), Gaps = 10/103 (10%)

Query  502  AGFPFNKWG------KARLY-YDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRA  554
            AG P  + G      +ARL  YD +        FA+  +N+IP   Q+ L+ A+   +  
Sbjct  179  AGLPGAEEGYTIEQFRARLADYDGIDKAKLREHFAFFLKNIIPVAEQVGLRMAVHPDDPP  238

Query  555  RTVAGVS-ICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYG  596
            R + G+  I ST+ + Q+  + + SIA   G T+  G+    G
Sbjct  239  RPILGLPRIVSTIEDMQWMVETVDSIA--NGFTMCTGSYGVRG  279


>sp|A0MD28|RPOA_PRRSS Replicase polyprotein 1ab OS=Porcine reproductive 
and respiratory syndrome virus (isolate Pig/United 
States/SD 01-08/2001) OX=857306 PE=1 SV=2
Length=3838

 Score = 38.1 bits (87),  Expect = 0.60, Method: Compositional matrix adjust.
 Identities = 53/259 (20%), Positives = 98/259 (38%), Gaps = 58/259 (22%)

Query  517   DSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLL  576
             D  S  + D + A   +    T+T   LK    +K + RT+ G +    + +R     + 
Sbjct  2679  DVQSIPEIDEMCARAVKENWQTVTPCTLKKQYCSKPKTRTILGTNNFIALAHRSALSGVT  2738

Query  577   KS-IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMAS  635
             ++ +     + + +G +KF        K ++  V    L   D   CDR+ P ++R   +
Sbjct  2739  QAFMKKAWKSPIALGKNKF--------KELHCTVAGRCLEA-DLASCDRSTPAIVRWFVA  2789

Query  636   LVLARKHTTCCSLSHRFYRLANECAQVLS--------EMVMCGGSLYVKPGGTSSGDATT  687
              +L              Y LA  C + L         ++V      + K GG SSGD  T
Sbjct  2790  NLL--------------YELAG-CEEYLPSYVLNCCHDLVATQDGAFTKRGGLSSGDPVT  2834

Query  688   AYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYA  747
             + +N+V+++                       +   QH +   L    ++   F+ E   
Sbjct  2835  SVSNTVYSL-----------------------IIYAQHMVLSALKMGHEIGLKFLEEQLK  2871

Query  748   Y--LRKHFSMMILSDDAVV  764
             +  L +   M++ SDD V+
Sbjct  2872  FEDLLEIQPMLVYSDDLVL  2890


>sp|P18478|POLG_WMV2U Genome polyprotein (Fragment) OS=Watermelon 
mosaic virus II (isolate USA) OX=148360 PE=1 SV=3
Length=1017

 Score = 37.7 bits (86),  Expect = 0.66, Method: Compositional matrix adjust.
 Identities = 59/269 (22%), Positives = 110/269 (41%), Gaps = 46/269 (17%)

Query  454  DYYRYNLPTM---CDIRQLLFVVE-VVDKYFDCYDGGC--INANQVIVNNLDKSAGFPFN  507
            D+++YN P +    D       VE V+    D     C  +     I  +L+  A     
Sbjct  291  DFFKYNKPVVLNEVDFNAFEKAVEGVITMMVDFEFAECLFVTDPDEIYGSLNMKAAVGAQ  350

Query  508  KWGKARLYYDSM-SYEDQDALFAYTKR--NVIPTITQMNLKYAISA-----KNRART---  556
              GK + Y+  M S++ +  L+   +R  N    I   +LK  +        N+ RT   
Sbjct  351  YKGKKQDYFSGMDSFDKERLLYLSCERLFNGEKGIWNGSLKAELRPIEKVQANKTRTFTA  410

Query  557  -----VAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVEN  611
                 + G  +C    N QF+   LK           +G +KFYGGW  +++++      
Sbjct  411  APLDTLLGAKVCVDDFNNQFYSFNLK-------CPWTVGMTKFYGGWDKLMRSLPD----  459

Query  612  PHLMGWDYPKCDRAM--PNMLRIMASLVLARKHTTCCSLSHRFY---RLANECAQVL-SE  665
                GW Y   D +    ++  ++ + VL+ +   CC +   +     L N  A+++ + 
Sbjct  460  ----GWTYCHADGSQFDSSLTPLLLNAVLSIR---CCFMEDWWVGREMLENLYAEIVYTP  512

Query  666  MVMCGGSLYVKPGGTSSGDATTAYANSVF  694
            ++   G+++ K  G +SG  +T   N++ 
Sbjct  513  ILAPDGTIFKKFRGNNSGQPSTVVDNTLM  541


>sp|Q83017|RPOA_LDVP Replicase polyprotein 1ab OS=Lactate dehydrogenase 
elevating virus (strain Plagemann) OX=300016 GN=rep 
PE=1 SV=2
Length=3616

 Score = 37.7 bits (86),  Expect = 0.66, Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 73/183 (40%), Gaps = 27/183 (15%)

Query  520   SYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKS-  578
             S+ D DAL          T+T   LK    +K++ RT+ G +    +  R     + +  
Sbjct  2506  SHPDIDALCKRACEEHWQTVTPCTLKKQYCSKSKTRTILGTNNFVALGLRSALSGVTQGF  2565

Query  579   IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLR-----IM  633
             +    G  + +G +KF         T          +  D   CDR+ P ++R     ++
Sbjct  2566  MRKGIGTPICLGKNKF---------TPLPVRIGGRCLEADLASCDRSTPAIIRWFTTNLL  2616

Query  634   ASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSV  693
               L  A +      L        N C  V+S M  C    + K GG SSGD  T+ +N+V
Sbjct  2617  FELAGAEEWIPSYVL--------NCCHDVVSTMSGC----FDKRGGLSSGDPVTSISNTV  2664

Query  694   FNI  696
             +++
Sbjct  2665  YSL  2667


>sp|Q89330|POLG_ZYMVR Genome polyprotein OS=Zucchini yellow mosaic 
virus (strain Reunion Island) OX=117129 PE=3 SV=1
Length=3083

 Score = 36.6 bits (83),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 57/270 (21%), Positives = 110/270 (41%), Gaps = 48/270 (18%)

Query  454   DYYRYNLPTMCDIRQLLFVVEVVDKY------FDCYDGGCINANQVIVNNLDKSAGFPFN  507
             D+++YN P + +       +E VD        F+  +   I   + I ++L+  A     
Sbjct  2359  DFFKYNKPVIVNQLDHDKFLEAVDGVIRMMCDFEFNECRFITDPEEIYSSLNMKAAIGAQ  2418

Query  508   KWGKARLYYDSM-SYEDQDALFAYTKR--NVIPTITQMNLKYAISA-----KNRART---  556
               GK + Y++ + +++ +  LF   +R  N    +   +LK  +        N+ RT   
Sbjct  2419  YRGKKKEYFEGLDNFDMERLLFQSCERLFNGYKGLWNGSLKAELRPLEKVQANKTRTFTA  2478

Query  557   -----VAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVEN  611
                  + G  +C    N +F+ K LK           +G SKFYGGW  +++ +      
Sbjct  2479  APIDTLLGAKVCVDDFNNEFYSKNLK-------CPWTVGMSKFYGGWDKLMRALPD----  2527

Query  612   PHLMGWDYPKCDRAM------PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL-S  664
                 GW Y   D +       P +L   A L++   +     +      L N  A+++ +
Sbjct  2528  ----GWLYCHADGSQFDSSLTPALLN--AVLIIRSFYMEDWWVGQEM--LENLYAEIVYT  2579

Query  665   EMVMCGGSLYVKPGGTSSGDATTAYANSVF  694
              ++   G+++ K  G +SG  +T   N++ 
Sbjct  2580  PILAPDGTIFKKFRGNNSGQPSTVVDNTLM  2609


>sp|B1KEK5|PYRC_SHEWM Dihydroorotase OS=Shewanella woodyi (strain 
ATCC 51908 / MS32) OX=392500 GN=pyrC PE=3 SV=1
Length=344

 Score = 35.8 bits (81),  Expect = 1.6, Method: Compositional matrix adjust.
 Identities = 39/159 (25%), Positives = 66/159 (42%), Gaps = 27/159 (17%)

Query  445  DGNAAISDYDYYRYNLPTMCDIRQLLFV-VEVVDKYFDCYDGGCINANQVIVNNLDKSA-  502
            + +AA+   D       TM +I  LL V  EV + + D +D   +     I  NL +   
Sbjct  107  NSDAAVKGLDALFPIFETMAEIGMLLLVHGEVTESHIDIFDREAL----FIERNLSRIVD  162

Query  503  GFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGV--  560
             FP     + ++ ++ ++ ++          NV  TIT  +L       NR   + G   
Sbjct  163  AFP-----QLKVVFEHITTKEAAEFVTSASDNVAATITPQHLLL-----NRNDLLVGGVR  212

Query  561  --SICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGG  597
              + C  +  R  HQ+ L++  AT       G+SKF+ G
Sbjct  213  PHNFCLPVLKRNIHQEALRAAVAT-------GSSKFFLG  244


>sp|Q492K3|HISX_BLOPB Histidinol dehydrogenase OS=Blochmanniella 
pennsylvanica (strain BPEN) OX=291272 GN=hisD PE=3 SV=1
Length=443

 Score = 35.4 bits (80),  Expect = 2.4, Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 16/110 (15%)

Query  706  ALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVC  765
            A+L T  + IA+K  + L H+  + L RN  V    +N          S MI++++ + C
Sbjct  271  AILITPYSCIAEKTKKEL-HKQLKILPRNDIVRNVLLN----------SRMIITNNLMEC  319

Query  766  FN--STYASQGLVASIKNFKSVLYYQNN---VFMSEAKCWTETDLTKGPH  810
            F+  ++YA + L+  I+N    L+Y  N   +F+      T  D   GP+
Sbjct  320  FSISNSYAPEHLIIQIENASDYLHYITNAGSIFLGNWSPETAGDYASGPN  369


>sp|P19811|RPOA_EAVBU Replicase polyprotein 1ab OS=Equine arteritis 
virus (strain Bucyrus) OX=299386 GN=rep PE=1 SV=3
Length=3175

 Score = 35.0 bits (79),  Expect = 4.3, Method: Compositional matrix adjust.
 Identities = 45/218 (21%), Positives = 86/218 (39%), Gaps = 49/218 (22%)

Query  520   SYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAG--------VSICSTMTNRQF  571
             SY   D + + + ++ + T T    K    +K + R++ G        +  C +     F
Sbjct  2032  SYCLIDDMVSQSMKSNLQTATMATCKRQYCSKYKIRSILGTNNYIGLGLRACLSGVTAAF  2091

Query  572   HQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENP--HLMGWDYPKCDRAMPNM  629
              +      A   G+ + +G SKF              +  P  + +  D   CDR+ P +
Sbjct  2092  QK------AGKDGSPIYLGKSKF------------DPIPAPDKYCLETDLESCDRSTPAL  2133

Query  630   LRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS-------EMVMCGGSLYVKPGGTSS  682
             +R  A+              +  + LA +   V S       ++V+ G   + K GG SS
Sbjct  2134  VRWFAT--------------NLIFELAGQPELVHSYVLNCCHDLVVAGSVAFTKRGGLSS  2179

Query  683   GDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV  720
             GD  T+ +N+++++       +   L     +IA+KY+
Sbjct  2180  GDPITSISNTIYSLVLYTQHMLLCGLEGYFPEIAEKYL  2217


>sp|O36979|POLG_ZYMVS Genome polyprotein OS=Zucchini yellow mosaic 
virus (strain Singapore) OX=117130 PE=3 SV=2
Length=3083

 Score = 34.7 bits (78),  Expect = 6.0, Method: Compositional matrix adjust.
 Identities = 59/270 (22%), Positives = 112/270 (41%), Gaps = 48/270 (18%)

Query  454   DYYRYNLPTMC---DIRQLLFVVEVVDKY---FDCYDGGCINANQVIVNNLDKSAGFPFN  507
             D+++YN P +    D  + L  V  V +    F+  +   I   + I ++L+  A     
Sbjct  2359  DFFKYNKPVVVNQLDHDKFLGAVNGVIRMMCDFEFNECRFITDPEEIYDSLNMKAAIGAQ  2418

Query  508   KWGKARLYYDSM-SYEDQDALFAYTKR--NVIPTITQMNLKYAISA-----KNRART---  556
               GK + Y++ + +++ +  LF   +R  N    +   +LK  +        N+ RT   
Sbjct  2419  YRGKKKEYFEGLDNFDRERLLFQSCERLFNGHKGLWNGSLKAELRPLEKVQANKTRTFTA  2478

Query  557   -----VAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVEN  611
                  + G  +C    N +F+ K LK           +G +KFYGGW  +++      E 
Sbjct  2479  APIDTLLGAKVCVDDFNNEFYSKNLK-------CPWTVGMTKFYGGWDKLMR------EL  2525

Query  612   PHLMGWDYPKCDRAM------PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL-S  664
             P   GW Y   D +       P +L   A L++   +     +      L N  A+++ +
Sbjct  2526  PD--GWLYCHADGSQFDSSLTPALLN--AVLIIRSFYMEDWWVGQEM--LENLYAEIVYT  2579

Query  665   EMVMCGGSLYVKPGGTSSGDATTAYANSVF  694
              ++   G+++ K  G +SG  +T   N++ 
Sbjct  2580  PILAPDGTIFKKFRGNNSGQPSTVVDNTLM  2609


>sp|Q0CRF3|ATG5_ASPTN Autophagy protein 5 OS=Aspergillus terreus 
(strain NIH 2624 / FGSC A1156) OX=341663 GN=atg5 PE=3 SV=2
Length=315

 Score = 33.5 bits (75),  Expect = 9.6, Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query  161  DWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFG  220
            DW D     +++R+ A+ G  +  A + +V+  D MRN    G++TL  +D +G W    
Sbjct  129  DWPDE----ELVRLDAD-GMVMHDAFINSVKEADFMRNGTAKGIMTLSKEDSSGLWKSVQ  183

Query  221  D  221
            D
Sbjct  184  D  184



Lambda      K        H        a         alpha
   0.324    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 108132787668
Results from round 2


Query= YP_009725307.1 RNA-dependent RNA polymerase [Severe acute
respiratory syndrome coronavirus 2]

Length=932
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value
Sequences used in model and found again:

sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute res...  1536    0.0   
sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus...  1534    0.0   
sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus...  1534    0.0   
sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute re...  1533    0.0   
sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus...  1531    0.0   
sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus...  1522    0.0   
sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus...  1516    0.0   
sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus...  1512    0.0   
sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East res...  1505    0.0   
sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavi...  1477    0.0   
sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavir...  1476    0.0   
sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus...  1471    0.0   
sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavi...  1464    0.0   
sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavi...  1459    0.0   
sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavi...  1459    0.0   
sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus...  1459    0.0   
sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavir...  1457    0.0   
sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavir...  1455    0.0   
sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemi...  1452    0.0   
sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavir...  1451    0.0   
sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavir...  1451    0.0   
sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavir...  1451    0.0   
sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavir...  1449    0.0   
sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavir...  1436    0.0   
sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavir...  1416    0.0   
sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmi...  1402    0.0   
sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavir...  1374    0.0   
sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectiou...  1372    0.0   
sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious...  1372    0.0   
sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious...  1367    0.0   
sp|Q9WQ77|R1AB_CVRSD Replicase polyprotein 1ab (Fragment) OS=Rat ...  468     8e-158
sp|Q9WQ76|R1AB_CVTMI Replicase polyprotein 1ab (Fragment) OS=Turk...  438     4e-146
sp|P0C6V7|R1AB_BEV Replicase polyprotein 1ab OS=Berne virus OX=11...  458     3e-137
sp|P0C6V8|R1AB_BRV1 Replicase polyprotein 1ab OS=Breda virus 1 OX...  449     3e-134
sp|Q008X6|R1AB_WBV24 Replicase polyprotein 1ab OS=White bream vir...  389     1e-113
sp|F8RL29|R1AB_AMV79 Replicase polyprotein 1ab OS=Alphamesoniviru...  348     7e-100
sp|A6YQT5|RPOA_PRRSV Replicase polyprotein 1ab OS=Porcine reprodu...  262     3e-71 
sp|Q9WJB2|RPOA_PRRSR Replicase polyprotein 1ab OS=Porcine reprodu...  262     3e-71 
sp|Q8B912|RPOA_PRRSB Replicase polyprotein 1ab OS=Porcine reprodu...  260     1e-70 
sp|Q68772|RPOA_SHFV Replicase polyprotein 1ab OS=Simian hemorrhag...  246     7e-66 

Sequences not found previously or not previously below threshold:

sp|Q9YN02|RPOA_PRRS1 Replicase polyprotein 1ab OS=Porcine reprodu...  259     3e-70
sp|A0MD28|RPOA_PRRSS Replicase polyprotein 1ab OS=Porcine reprodu...  225     3e-59
sp|Q04561|RPOA_PRRSL Replicase polyprotein 1ab OS=Porcine reprodu...  225     3e-59
sp|Q83017|RPOA_LDVP Replicase polyprotein 1ab OS=Lactate dehydrog...  200     3e-51
sp|Q06502|RPOA_LDVC Replicase polyprotein 1ab OS=Lactate dehydrog...  197     3e-50
sp|P19811|RPOA_EAVBU Replicase polyprotein 1ab OS=Equine arteriti...  178     4e-44
sp|Q01901|POLG_PRSVH Genome polyprotein OS=Papaya ringspot virus ...  60.5    8e-08
sp|P18479|POLG_ZYMVC Genome polyprotein OS=Zucchini yellow mosaic...  60.1    1e-07
sp|O36979|POLG_ZYMVS Genome polyprotein OS=Zucchini yellow mosaic...  57.4    7e-07
sp|P18478|POLG_WMV2U Genome polyprotein (Fragment) OS=Watermelon ...  57.0    8e-07
sp|Q89330|POLG_ZYMVR Genome polyprotein OS=Zucchini yellow mosaic...  56.2    2e-06
sp|A0AUJ5|POLG_BVY3 Genome polyprotein OS=Blackberry virus Y (iso...  53.5    1e-05
sp|O56075|POLG_PEMVM Genome polyprotein OS=Peanut mottle virus (s...  53.1    2e-05
sp|P89876|POLG_LMVE Genome polyprotein OS=Lettuce mosaic virus (s...  49.3    2e-04
sp|Q65399|POLG_BCMNN Genome polyprotein OS=Bean common mosaic nec...  49.3    2e-04
sp|P17765|POLG_BYMV Genome polyprotein OS=Bean yellow mosaic viru...  48.9    2e-04
sp|Q01681|POLG_PPVEA Genome polyprotein (Fragment) OS=Plum pox po...  48.1    4e-04
sp|P36287|POLG_SMSV4 Genome polyprotein (Fragment) OS=San Miguel ...  48.1    4e-04
sp|P20234|POLG_OMV Genome polyprotein (Fragment) OS=Ornithogalum ...  48.1    4e-04
sp|Q01500|POLG_PEMVC Genome polyprotein OS=Pepper mottle virus (i...  48.1    5e-04
sp|P19723|POLG_PRSVP Genome polyprotein (Fragment) OS=Papaya ring...  47.7    5e-04
sp|Q65730|POLG_BSTV1 Genome polyprotein OS=Brome streak virus (st...  48.1    5e-04
sp|P17766|POLG_PPVNA Genome polyprotein OS=Plum pox potyvirus (is...  48.1    5e-04
sp|Q65729|POLG_BSTVG Genome polyprotein (Fragment) OS=Brome strea...  47.4    7e-04
sp|P09814|POLG_TVMV Genome polyprotein OS=Tobacco vein mottling v...  47.4    8e-04
sp|P13529|POLG_PPVD Genome polyprotein OS=Plum pox potyvirus (str...  47.4    0.001
sp|P21231|POLG_SBMVN Genome polyprotein OS=Soybean mosaic virus (...  47.0    0.001
sp|P17767|POLG_PPVRA Genome polyprotein OS=Plum pox potyvirus (st...  47.0    0.001
sp|Q90069|POLG_SBMVG Genome polyprotein OS=Soybean mosaic virus (...  47.0    0.001
sp|P29152|POLG_PSBMV Genome polyprotein OS=Pea seed-borne mosaic ...  47.0    0.001
sp|Q6XW15|POLG_BTMV Genome polyprotein OS=Beet mosaic virus OX=11...  46.6    0.002
sp|Q84934|POLG_PPVSK Genome polyprotein OS=Plum pox potyvirus (st...  46.2    0.002
sp|P31999|POLG_LMV0 Genome polyprotein OS=Lettuce mosaic virus (s...  46.2    0.002
sp|Q8JV21|POLG_LJUV1 Genome polyprotein OS=Ljunganvirus 1 OX=1001...  45.8    0.002
sp|P19724|POLG_PRSVW Genome polyprotein (Fragment) OS=Papaya ring...  45.4    0.002
sp|P36286|POLG_SMSV1 Genome polyprotein OS=San Miguel sea lion vi...  45.8    0.002
sp|Q02963|POLG_PVYHU Genome polyprotein OS=Potato virus Y (strain...  45.4    0.003
sp|Q9WAL8|POL1_SDVS5 RNA1 polyprotein OS=Satsuma dwarf virus (iso...  44.7    0.005
sp|O11436|POLG_RGMVD Genome polyprotein OS=Ryegrass mosaic virus ...  44.3    0.007
sp|Q9DUN3|POLG_VESVA Genome polyprotein OS=Vesicular exanthema of...  43.9    0.008
sp|P04517|POLG_TEV Genome polyprotein OS=Tobacco etch virus OX=12...  44.3    0.008
sp|E5D8F2|POLG_HRV15 Genome polyprotein OS=Human rhinovirus C (st...  43.9    0.009
sp|O73556|POLG_HPE2W Genome polyprotein OS=Human parechovirus 2 (...  43.5    0.011
sp|Q66474|POLG_EC06C Genome polyprotein OS=Echovirus 6 (strain Ch...  43.5    0.011
sp|Q66578|POLG_HPE1H Genome polyprotein OS=Human parechovirus 1 (...  43.1    0.016
sp|Q96725|POLG_EBHSG Genome polyprotein OS=European brown hare sy...  43.1    0.017
sp|Q9YID8|POLG_HPEV5 Genome polyprotein OS=Human parechovirus 5 (...  42.7    0.020
sp|O41174|POLG_PEV9U Genome polyprotein OS=Porcine enterovirus 9 ...  42.7    0.021
sp|P18247|POLG_PVYN Genome polyprotein OS=Potato virus Y (strain ...  42.7    0.021
sp|Q66849|POLG_EC09H Genome polyprotein OS=Echovirus 9 (strain Hi...  42.3    0.026
sp|P21404|POLG_CXA9 Genome polyprotein OS=Coxsackievirus A9 (stra...  42.3    0.028
sp|Q9WN78|POLG_EC30B Genome polyprotein OS=Echovirus 30 (strain B...  42.3    0.028
sp|Q76L40|POL1_BBWVS RNA1 polyprotein OS=Broad bean wilt virus 1 ...  42.0    0.032
sp|Q9QL88|POLG_CXB6S Genome polyprotein OS=Coxsackievirus B6 (str...  42.0    0.033
sp|Q86117|POLG_RHDVS Genome polyprotein OS=Rabbit hemorrhagic dis...  42.0    0.034
sp|P27410|POLG_RHDVF Genome polyprotein OS=Rabbit hemorrhagic dis...  42.0    0.034
sp|Q89273|POLG_RHDVB Genome polyprotein OS=Rabbit hemorrhagic dis...  42.0    0.034
sp|Q86119|POLG_RHDVA Genome polyprotein OS=Rabbit hemorrhagic dis...  42.0    0.034
sp|Q65900|POLG_CX16G Genome polyprotein OS=Coxsackievirus A16 (st...  42.0    0.035
sp|P08291|POLG_CXB1J Genome polyprotein OS=Coxsackievirus B1 (str...  42.0    0.038
sp|Q8V736|POLG_CACV4 Genome polyprotein OS=Canine calicivirus (st...  42.0    0.039
sp|P89201|POLG_SPMMV Genome polyprotein OS=Sweet potato mild mott...  42.0    0.039
sp|P36312|POL1_CPSMV RNA1 polyprotein OS=Cowpea severe mosaic vir...  41.6    0.040
sp|P12916|POLG_HRV1B Genome polyprotein OS=Human rhinovirus 1B OX...  41.6    0.043
sp|P29813|POLG_EC11G Genome polyprotein OS=Echovirus 11 (strain G...  41.6    0.050
sp|Q82122|POLG_HRV16 Genome polyprotein OS=Human rhinovirus 16 OX...  41.6    0.051
sp|P16604|POLG_SVDVH Genome polyprotein OS=Swine vesicular diseas...  41.6    0.051
sp|Q66575|POLG_EC12T Genome polyprotein OS=Echovirus 12 (strain T...  41.6    0.051
sp|P13900|POLG_SVDVU Genome polyprotein OS=Swine vesicular diseas...  41.2    0.053
sp|Q85197|POLG_PVMA Genome polyprotein OS=Potato virus A OX=12215...  41.2    0.059
sp|P23008|POLG_HRV1A Genome polyprotein OS=Human rhinovirus 1A OX...  41.2    0.059
sp|Q66282|POLG_CXB3W Genome polyprotein OS=Coxsackievirus B3 (str...  41.2    0.059
sp|P27411|POLG_RHDV3 Genome polyprotein OS=Rabbit hemorrhagic dis...  40.8    0.071
sp|Q9YLJ1|POLG_EC05N Genome polyprotein OS=Echovirus 5 (strain No...  40.8    0.079
sp|Q66577|POLG_EC09B Genome polyprotein OS=Echovirus 9 (strain Ba...  40.8    0.079
sp|Q9YLG5|POLG_CXB2O Genome polyprotein OS=Coxsackievirus B2 (str...  40.4    0.098
sp|Q672I1|POLG_SVSAP Genome polyprotein OS=Sapporo virus (isolate...  40.0    0.12 
sp|Q69014|POLG_SVM93 Genome polyprotein OS=Sapporo virus (strain ...  40.0    0.12 
sp|Q03053|POLG_CXB5P Genome polyprotein OS=Coxsackievirus B5 (str...  40.0    0.13 
sp|B9VUU3|POLG_HE71 Genome polyprotein OS=Human enterovirus 71 OX...  39.7    0.16 
sp|A4KZ49|POLG_TRMVU Genome polyprotein OS=Triticum mosaic virus ...  39.7    0.17 
sp|O91734|POLG_EC01F Genome polyprotein OS=Echovirus 1 (strain Hu...  39.3    0.20 
sp|P90245|POL1_BAMMN Genome polyprotein 1 OS=Barley mild mosaic v...  39.3    0.24 
sp|P12915|POLG_BOVEV Genome polyprotein OS=Bovine enterovirus (st...  39.3    0.24 
sp|Q05057|POLG_PYFV1 Genome polyprotein OS=Parsnip yellow fleck v...  38.9    0.29 
sp|Q86887|POLG_CXB4E Genome polyprotein OS=Coxsackievirus B4 (str...  38.9    0.31 
sp|Q9QF31|POLG_CX16T Genome polyprotein OS=Coxsackievirus A16 (st...  38.9    0.32 
sp|P89657|RDRP_PMMVJ Replicase large subunit OS=Pepper mild mottl...  38.5    0.36 
sp|Q12018|CDC53_YEAST Cell division control protein 53 OS=Sacchar...  38.5    0.36 
sp|P89509|POLG_TUMVJ Genome polyprotein OS=Turnip mosaic virus (s...  38.5    0.38 
sp|P08292|POLG_CXB4J Genome polyprotein OS=Coxsackievirus B4 (str...  38.5    0.38 
sp|Q8JN60|POLG_BECNB Genome polyprotein OS=Bovine enteric caliciv...  38.5    0.41 
sp|P14879|PYR4_MICDP Phycobilisome 31.6 kDa linker polypeptide, p...  37.3    0.53 
sp|Q8B3M2|POLG_DWV Genome polyprotein OS=Deformed wing virus OX=1...  38.1    0.53 
sp|Q85036|RDRP_ROTPY RNA-directed RNA polymerase OS=Rotavirus A (...  37.7    0.67 
sp|Q6W8W5|POL1_ARMVN RNA1 polyprotein OS=Arabis mosaic virus (iso...  37.7    0.68 
sp|Q02597|POLG_TUMVQ Genome polyprotein OS=Turnip mosaic virus (s...  37.7    0.71 
sp|P04936|POLG_HRV2 Genome polyprotein OS=Human rhinovirus 2 OX=1...  37.3    0.84 
sp|P03313|POLG_CXB3N Genome polyprotein OS=Coxsackievirus B3 (str...  37.3    0.87 
sp|P29098|RDRP_PMMVS Replicase large subunit OS=Pepper mild mottl...  37.3    0.95 
sp|Q6XDK8|POLG_SVM10 Genome polyprotein OS=Sapporo virus (isolate...  37.3    0.96 
sp|Q04574|POL1_BAYMG Genome polyprotein 1 OS=Barley yellow mosaic...  37.3    0.96 
sp|A1XIP9|POL1_TOTV RNA1 polyprotein OS=Tomato torrado virus (iso...  37.3    1.00 
sp|A7J3A2|RDRP_ROTYO RNA-directed RNA polymerase OS=Rotavirus A (...  36.6    1.3  
sp|P03302|POLG_POL3L Genome polyprotein OS=Poliovirus type 3 (str...  37.0    1.3  
sp|Q66479|POLG_HE71M Genome polyprotein OS=Human enterovirus 71 (...  36.6    1.4  
sp|A4ZCW8|RDRP_ROTHW RNA-directed RNA polymerase OS=Rotavirus A (...  36.6    1.5  
sp|B1NKR3|RDRP_ROTAD RNA-directed RNA polymerase OS=Rotavirus A (...  36.6    1.5  
sp|P17699|RDRP_ROTPG RNA-directed RNA polymerase OS=Rotavirus A (...  36.6    1.5  
sp|B1NKU1|RDRP_ROTWI RNA-directed RNA polymerase OS=Rotavirus A (...  36.6    1.6  
sp|Q30XF7|TGT_OLEA2 Queuine tRNA-ribosyltransferase OS=Oleidesulf...  36.2    1.6  
sp|P03303|POLG_HRV14 Genome polyprotein OS=Human rhinovirus 14 OX...  36.6    1.7  
sp|P22055|POLG_CXA21 Genome polyprotein OS=Coxsackievirus A21 (st...  36.2    1.8  
sp|P03300|POLG_POL1M Genome polyprotein OS=Poliovirus type 1 (str...  36.2    1.8  
sp|P06210|POLG_POL2L Genome polyprotein OS=Poliovirus type 2 (str...  36.2    1.8  
sp|P06209|POLG_POL32 Genome polyprotein OS=Poliovirus type 3 (str...  36.2    1.9  
sp|P03301|POLG_POL1S Genome polyprotein OS=Poliovirus type 1 (str...  36.2    2.0  
sp|B1NKT7|RDRP_ROTHT RNA-directed RNA polymerase OS=Rotavirus A (...  35.8    2.3  
sp|Q9QNB3|RDRP_ROTHK RNA-directed RNA polymerase OS=Rotavirus A (...  35.8    2.3  
sp|P36290|POLG_CXA24 Genome polyprotein OS=Coxsackievirus A24 (st...  36.2    2.3  
sp|C6KEF6|POLG_HKV1 Genome polyprotein OS=Human klassevirus 1 OX=...  36.2    2.3  
sp|Q8V5E0|POL1_BRAV RNA1 polyprotein OS=Blackcurrant reversion as...  35.8    2.4  
sp|Q09725|MIS4_SCHPO Sister chromatid cohesion protein mis4 OS=Sc...  35.4    3.0  
sp|P11398|PYR1_MASLA Phycobilisome 32.1 kDa linker polypeptide, p...  34.6    3.5  
sp|B9E0V5|RSMH_CLOK1 Ribosomal RNA small subunit methyltransferas...  34.3    4.5  
sp|B1KEK5|PYRC_SHEWM Dihydroorotase OS=Shewanella woodyi (strain ...  34.6    4.6  
sp|P17468|RDRP_ROTRF RNA-directed RNA polymerase OS=Rotavirus A (...  35.0    4.6  
sp|Q82081|POLG_HRV3 Genome polyprotein OS=Human rhinovirus 3 OX=4...  35.0    4.6  
sp|B1NKS9|RDRP_ROTHP RNA-directed RNA polymerase OS=Rotavirus A (...  35.0    4.8  
sp|Q6W8W4|POL1_RRVC RNA1 polyprotein OS=Raspberry ringspot virus ...  34.6    5.4  
sp|Q3ZK55|RDRP_ROT41 RNA-directed RNA polymerase OS=Rotavirus A (...  34.3    6.5  
sp|A7J398|RDRP_ROTBN RNA-directed RNA polymerase OS=Rotavirus A (...  34.3    7.0  
sp|P21615|RDRP_ROTBU RNA-directed RNA polymerase OS=Rotavirus A (...  34.3    7.1  
sp|B2BMF7|RDRP_ROTW3 RNA-directed RNA polymerase OS=Rotavirus A (...  34.3    7.6  
sp|A4G060|MFNA_METM5 Probable L-tyrosine/L-aspartate decarboxylas...  33.9    8.0  
sp|A6VIC0|MFNA_METM7 Probable L-tyrosine/L-aspartate decarboxylas...  33.9    8.1  
sp|A3DSK5|RDRP_ROTHL RNA-directed RNA polymerase OS=Rotavirus A (...  34.3    8.1  
sp|Q288N7|POLG_BECN1 Genome polyprotein OS=Bovine enteric caliciv...  34.3    8.7  
sp|Q68T42|POLG_HED68 Genome polyprotein OS=Human enterovirus D68 ...  33.9    9.4  
sp|B2BMQ6|RDRP_ROTH6 RNA-directed RNA polymerase OS=Rotavirus A (...  33.9    9.4  


>sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute 
respiratory syndrome coronavirus OX=694009 GN=rep PE=1 SV=1
Length=7073

 Score = 1536 bits (3976),  Expect = 0.0, Method: Composition-based stats.
 Identities = 898/932 (96%), Positives = 916/932 (98%), Gaps = 0/932 (0%)

Query  1     SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD  60
             SADA +FLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYN+KVAGFAKFLKTNCCRFQEKD
Sbjct  4370  SADASTFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNEKVAGFAKFLKTNCCRFQEKD  4429

Query  61    EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT  120
             E+ NL+DSYFVVKRHT SNYQHEETIYNL+KDCPAVA HDFFKFR+DGDMVPHISRQRLT
Sbjct  4430  EEGNLLDSYFVVKRHTMSNYQHEETIYNLVKDCPAVAVHDFFKFRVDGDMVPHISRQRLT  4489

Query  121   KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE  180
             KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE
Sbjct  4490  KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE  4549

Query  181   RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL  240
             RVRQ+LLKTVQFCDAMR+AGIVGVLTLDNQDLNGNWYDFGDF+Q  PG GVP+VDSYYSL
Sbjct  4550  RVRQSLLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSL  4609

Query  241   LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN  300
             LMPILTLTRAL AESH+D DL KP IKWDLLKYDFTEERL LFDRYFKYWDQTYHPNC+N
Sbjct  4610  LMPILTLTRALAAESHMDADLAKPLIKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCIN  4669

Query  301   CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN  360
             CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN
Sbjct  4670  CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN  4729

Query  361   LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY  420
             LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY
Sbjct  4730  LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY  4789

Query  421   DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF  480
             DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF
Sbjct  4790  DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF  4849

Query  481   DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT  540
             DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT
Sbjct  4850  DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT  4909

Query  541   QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN  600
             QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN
Sbjct  4910  QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN  4969

Query  601   MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA  660
             MLKTVYSDVE PHLMGWDYPKCDRAMPNMLRIMASLVLARKH TCC+LSHRFYRLANECA
Sbjct  4970  MLKTVYSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHNTCCNLSHRFYRLANECA  5029

Query  661   QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV  720
             QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV
Sbjct  5030  QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV  5089

Query  721   RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK  780
             RNLQHRLYECLYRNRDVD +FV+EFYAYLRKHFSMMILSDDAVVC+NS YA+QGLVASIK
Sbjct  5090  RNLQHRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIK  5149

Query  781   NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA  840
             NFK+VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA
Sbjct  5150  NFKAVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA  5209

Query  841   GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML  900
             GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML
Sbjct  5210  GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML  5269

Query  901   DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ
Sbjct  5270  DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  5301


>sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus 
Rp3/2004 OX=349344 GN=rep PE=3 SV=1
Length=7071

 Score = 1534 bits (3972),  Expect = 0.0, Method: Composition-based stats.
 Identities = 897/932 (96%), Positives = 914/932 (98%), Gaps = 0/932 (0%)

Query  1     SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD  60
             SADA +FLNRVCGVSAARLTPCGTG STDVVYRAFDIYN+KVAGFAKFLKTNCCRFQEKD
Sbjct  4368  SADASTFLNRVCGVSAARLTPCGTGISTDVVYRAFDIYNEKVAGFAKFLKTNCCRFQEKD  4427

Query  61    EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT  120
             E+ NL+DSYFVVKRHT SNYQHEETIYNL+KDCPAVA HDFFKFR+DGDMVPHISRQRLT
Sbjct  4428  EEGNLLDSYFVVKRHTMSNYQHEETIYNLVKDCPAVAVHDFFKFRVDGDMVPHISRQRLT  4487

Query  121   KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE  180
             KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE
Sbjct  4488  KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE  4547

Query  181   RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL  240
             RVRQALLKTVQFCDAMR+AGIVGVLTLDNQDLNGNWYDFGDF+Q  PG GVP+VDSYYSL
Sbjct  4548  RVRQALLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSL  4607

Query  241   LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN  300
             LMPILTLTRAL AESH+D DL KP IKWDLLKYDFT ERL LFDRYFKYWDQTYHPNC+N
Sbjct  4608  LMPILTLTRALAAESHMDADLAKPLIKWDLLKYDFTAERLCLFDRYFKYWDQTYHPNCIN  4667

Query  301   CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN  360
             CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN
Sbjct  4668  CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN  4727

Query  361   LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY  420
             LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY
Sbjct  4728  LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY  4787

Query  421   DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF  480
             DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF
Sbjct  4788  DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF  4847

Query  481   DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT  540
             DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT
Sbjct  4848  DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT  4907

Query  541   QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN  600
             QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN
Sbjct  4908  QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN  4967

Query  601   MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA  660
             MLKTVYSDVE PHLMGWDYPKCDRAMPNMLRIMASLVLARKH+TCC+LSHRFYRLANECA
Sbjct  4968  MLKTVYSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHSTCCNLSHRFYRLANECA  5027

Query  661   QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV  720
             QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV
Sbjct  5028  QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV  5087

Query  721   RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK  780
             RNLQHRLYECLYRNRDVD +FV EFYAYLRKHFSMMILSDDAVVC+NS YA+QGLVASIK
Sbjct  5088  RNLQHRLYECLYRNRDVDHEFVGEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIK  5147

Query  781   NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA  840
             NFK+VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA
Sbjct  5148  NFKAVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA  5207

Query  841   GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML  900
             GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML
Sbjct  5208  GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML  5267

Query  901   DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ
Sbjct  5268  DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  5299


>sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus 
HKU3 OX=442736 GN=rep PE=3 SV=1
Length=7067

 Score = 1534 bits (3971),  Expect = 0.0, Method: Composition-based stats.
 Identities = 891/932 (96%), Positives = 918/932 (98%), Gaps = 0/932 (0%)

Query  1     SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD  60
             SADA +FLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYN+KVAGFAKFLKTNCCRFQEKD
Sbjct  4364  SADASTFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNEKVAGFAKFLKTNCCRFQEKD  4423

Query  61    EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT  120
             E+ NL+DSYFVVKRHT SNYQHEETIYNL+K+CPAVA HDFFKFR+DGDMVPHISRQRLT
Sbjct  4424  EEGNLLDSYFVVKRHTMSNYQHEETIYNLIKECPAVAVHDFFKFRVDGDMVPHISRQRLT  4483

Query  121   KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE  180
             KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDD+YFNKKDWYDFVENPD+LRVYANLGE
Sbjct  4484  KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDNYFNKKDWYDFVENPDVLRVYANLGE  4543

Query  181   RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL  240
             RVR+ALLKTVQFCDAMR+AGIVGVLTLDNQDLNGNWYDFGDF+Q  PG GVP+VDSYYSL
Sbjct  4544  RVRRALLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSL  4603

Query  241   LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN  300
             LMPILTLT+AL AESH+D DL KP +KWDLLKYDFTEERL LFDRYFKYWDQTYHPNC+N
Sbjct  4604  LMPILTLTKALAAESHMDADLAKPLVKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCIN  4663

Query  301   CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN  360
             CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN
Sbjct  4664  CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN  4723

Query  361   LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY  420
             LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY
Sbjct  4724  LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY  4783

Query  421   DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF  480
             DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF
Sbjct  4784  DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF  4843

Query  481   DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT  540
             DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT
Sbjct  4844  DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT  4903

Query  541   QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN  600
             QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN
Sbjct  4904  QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN  4963

Query  601   MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA  660
             MLKTVYSDVE+PHLMGWDYPKCDRAMPNMLRIMASL+LARKH+TCC+LSHRFYRLANECA
Sbjct  4964  MLKTVYSDVESPHLMGWDYPKCDRAMPNMLRIMASLILARKHSTCCNLSHRFYRLANECA  5023

Query  661   QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV  720
             QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV
Sbjct  5024  QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV  5083

Query  721   RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK  780
             RNLQHRLYECLYRNRDVD +FV+EFYAYLRKHFSMMILSDDAVVC+NS YA+QGLVASIK
Sbjct  5084  RNLQHRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIK  5143

Query  781   NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA  840
             NFK+VLYYQNNVFMSEAKCWTETDLT+GPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA
Sbjct  5144  NFKAVLYYQNNVFMSEAKCWTETDLTRGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA  5203

Query  841   GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML  900
             GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML
Sbjct  5204  GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML  5263

Query  901   DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ
Sbjct  5264  DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  5295


>sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute 
respiratory syndrome coronavirus 2 OX=2697049 GN=rep PE=1 
SV=1
Length=7096

 Score = 1533 bits (3970),  Expect = 0.0, Method: Composition-based stats.
 Identities = 932/932 (100%), Positives = 932/932 (100%), Gaps = 0/932 (0%)

Query  1     SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD  60
             SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD
Sbjct  4393  SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD  4452

Query  61    EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT  120
             EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT
Sbjct  4453  EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT  4512

Query  121   KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE  180
             KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE
Sbjct  4513  KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE  4572

Query  181   RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL  240
             RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL
Sbjct  4573  RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL  4632

Query  241   LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN  300
             LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN
Sbjct  4633  LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN  4692

Query  301   CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN  360
             CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN
Sbjct  4693  CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN  4752

Query  361   LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY  420
             LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY
Sbjct  4753  LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY  4812

Query  421   DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF  480
             DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF
Sbjct  4813  DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF  4872

Query  481   DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT  540
             DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT
Sbjct  4873  DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT  4932

Query  541   QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN  600
             QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN
Sbjct  4933  QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN  4992

Query  601   MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA  660
             MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA
Sbjct  4993  MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA  5052

Query  661   QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV  720
             QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV
Sbjct  5053  QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV  5112

Query  721   RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK  780
             RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK
Sbjct  5113  RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK  5172

Query  781   NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA  840
             NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA
Sbjct  5173  NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA  5232

Query  841   GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML  900
             GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML
Sbjct  5233  GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML  5292

Query  901   DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ
Sbjct  5293  DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  5324


>sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus 
279/2005 OX=389167 GN=rep PE=3 SV=1
Length=7079

 Score = 1531 bits (3965),  Expect = 0.0, Method: Composition-based stats.
 Identities = 894/932 (96%), Positives = 915/932 (98%), Gaps = 0/932 (0%)

Query  1     SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD  60
             SADA +FLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYN++VAGFAKFLKTNCCRFQEKD
Sbjct  4376  SADASTFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNERVAGFAKFLKTNCCRFQEKD  4435

Query  61    EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT  120
             E+ NL+DSYFVVKRHT SNYQHEETIYNL+K+CPAVA HDFFKFR+DGDMVPHISRQRLT
Sbjct  4436  EEGNLLDSYFVVKRHTMSNYQHEETIYNLVKECPAVAVHDFFKFRVDGDMVPHISRQRLT  4495

Query  121   KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE  180
             KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE
Sbjct  4496  KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE  4555

Query  181   RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL  240
             RVRQALLKTVQFCDAMR+AGIVGVLTLDNQDLNGNWYDFGDF+Q  PG GVP+VDSYYSL
Sbjct  4556  RVRQALLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSL  4615

Query  241   LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN  300
             LMPILTLT+AL AESH+D DL KP IKWDLLKYDFTEERL LFDRYFKYWDQTYHPNC+N
Sbjct  4616  LMPILTLTKALAAESHMDADLAKPLIKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCIN  4675

Query  301   CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN  360
             CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN
Sbjct  4676  CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN  4735

Query  361   LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY  420
             LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY
Sbjct  4736  LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY  4795

Query  421   DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF  480
             DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF
Sbjct  4796  DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF  4855

Query  481   DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT  540
             DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQD LFAYTKRNVIPTIT
Sbjct  4856  DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDVLFAYTKRNVIPTIT  4915

Query  541   QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN  600
             QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN
Sbjct  4916  QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN  4975

Query  601   MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA  660
             MLKTVYSDVE PHLMGWDYPKCDRAMPNMLRIMASLVLARKH+TCC+LSHRFYRLANECA
Sbjct  4976  MLKTVYSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHSTCCNLSHRFYRLANECA  5035

Query  661   QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV  720
             QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV
Sbjct  5036  QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV  5095

Query  721   RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK  780
             RNLQHRLYECLYRNRDVD +FV+EFYAYLRKHFSMMILSDDAVVC+NS YA+QGLVASIK
Sbjct  5096  RNLQHRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIK  5155

Query  781   NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA  840
             NFK+V YYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA
Sbjct  5156  NFKAVHYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA  5215

Query  841   GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML  900
             GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML
Sbjct  5216  GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML  5275

Query  901   DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ
Sbjct  5276  DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  5307


>sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus 
HKU5 OX=694008 GN=rep PE=3 SV=1
Length=7182

 Score = 1522 bits (3940),  Expect = 0.0, Method: Composition-based stats.
 Identities = 659/934 (71%), Positives = 776/934 (83%), Gaps = 3/934 (0%)

Query  2     ADAQSFLNRVCGV-SAARLTPCGTGTSTDVVYRAFDIYN--DKVAGFAKFLKTNCCRFQE  58
             +   +FLNRV G    AR+ PC +G +TDVV+RAFDI N   KVAG  K+ KTN CRF E
Sbjct  4468  SKDSNFLNRVRGSIVNARIEPCASGLTTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE  4527

Query  59    KDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQR  118
              D++ + +DS+FVVKRHT  NY+ E+  Y+L+KDC AVA HDFF F +D    PHI RQR
Sbjct  4528  VDDEGHRLDSFFVVKRHTMENYELEKRCYDLVKDCDAVAVHDFFIFDVDKVKTPHIVRQR  4587

Query  119   LTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANL  178
             LT+YTM DLVYALRHFD+ NC+ LK ILV Y CCD  YF+ K W+DFVENP+++ VY  L
Sbjct  4588  LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCDASYFDNKLWFDFVENPNVISVYHKL  4647

Query  179   GERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYY  238
             GER+RQA+L TV+FCD M  +G+VGVLTLDNQDLNG WYDFGDF+ T PG+GV +VDSYY
Sbjct  4648  GERIRQAVLNTVKFCDQMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY  4707

Query  239   SLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNC  298
             S LMP+L++T  L AE+H D DLTKP I+W LL+YD+T+ ++ LF++YFK WDQ YHPNC
Sbjct  4708  SYLMPVLSMTNCLAAETHRDCDLTKPLIEWPLLEYDYTDYKIGLFEKYFKXWDQQYHPNC  4767

Query  299   VNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQD  358
             VNC DDRC+LHCANFNVLFS   P TSFGP+VRKIFVDGVPFV+S GYH++ELG+V N D
Sbjct  4768  VNCTDDRCVLHCANFNVLFSMTLPGTSFGPIVRKIFVDGVPFVISCGYHYKELGLVMNMD  4827

Query  359   VNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKD  418
             V+LH  RLS KEL++YAADPAMH AS + L D RT CFSVAALT  + FQTV+PGNFNKD
Sbjct  4828  VSLHRHRLSLKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKD  4887

Query  419   FYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDK  478
             FYDF VSKGFFKEGSSV L+HFFFAQDG+AAI+DY YY YNLPTMCDI+Q+LF +EVVD+
Sbjct  4888  FYDFVVSKGFFKEGSSVTLRHFFFAQDGHAAITDYSYYAYNLPTMCDIKQMLFCMEVVDR  4947

Query  479   YFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPT  538
             YF+ YDGGC+NA++VIVNNLDKSAG PFNK+GKAR+YY+S+SY++QD LFA TKRNV+PT
Sbjct  4948  YFEIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESLSYQEQDELFAMTKRNVLPT  5007

Query  539   ITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGW  598
             ITQMNLKYAISAKNRARTVAGVSI STMTNRQ+HQK+LKS+AATRG+T VIGT+KFYGGW
Sbjct  5008  ITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGSTCVIGTTKFYGGW  5067

Query  599   HNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANE  658
               MLKT+Y DV+NPHLMGWDYPKCDRAMPNM RI ASL+LARKH+TCC+ + RFYRLANE
Sbjct  5068  DFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHSTCCTNTDRFYRLANE  5127

Query  659   CAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADK  718
             CAQVLSE V+CGG  YVKPGGTSSGDATTAYANSVFNI QA TANV+AL+  +GN I D+
Sbjct  5128  CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNTIVDE  5187

Query  719   YVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVAS  778
              V+++Q  LY  +YR    D  FV+ +YA+L KHFSMMILSDD VVC+NS YA++G +AS
Sbjct  5188  EVKDMQFELYVNVYRKSQPDPKFVDRYYAFLNKHFSMMILSDDGVVCYNSDYATKGYIAS  5247

Query  779   IKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRIL  838
             I+NFK  LYYQNNVFMSEAKCW ETDL KGPHEFCSQHT+ +K GDD  +LPYPDPSRIL
Sbjct  5248  IQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLFIKDGDDGYFLPYPDPSRIL  5307

Query  839   GAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGH  898
              AGCFVDDIVKTDGTLM+ERFVSLAIDAYPLTKH + EY +VF +YLQYI KL+ +LTGH
Sbjct  5308  SAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHDDPEYQNVFWVYLQYIEKLYKDLTGH  5367

Query  899   MLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             MLD YSVML  DN++++WE  FY  +YT  T LQ
Sbjct  5368  MLDSYSVMLCGDNSAKFWEESFYRDLYTAPTTLQ  5401


>sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus 
HKU4 OX=694007 GN=rep PE=1 SV=1
Length=7119

 Score = 1516 bits (3924),  Expect = 0.0, Method: Composition-based stats.
 Identities = 660/934 (71%), Positives = 777/934 (83%), Gaps = 3/934 (0%)

Query  2     ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDK--VAGFAKFLKTNCCRFQE  58
             +   +FLNRV G S  ARL PC +G +TDVVYRAFDI N K  VAG  K+ KTN CRF +
Sbjct  4421  SKDTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQ  4480

Query  59    KDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQR  118
              D++ + +DSYF+VKRHT SNY+ E+  Y+LLKDC AVA HDFF F +D    PHI RQ 
Sbjct  4481  VDDEGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQS  4540

Query  119   LTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANL  178
             LT+YTM DLVYALRHFD+ NC+ LK ILV Y CC+  YF+ K W+DFVENP ++ VY  L
Sbjct  4541  LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKL  4600

Query  179   GERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYY  238
             GER+RQA+L TV+ CD M  +G+VGVLTLDNQDLNG WYDFGDF+ T PG+GV +VDSYY
Sbjct  4601  GERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY  4660

Query  239   SLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNC  298
             S LMP+L++T  L AE+H D D  KP I+W LL+YD+T+ ++ LF++YFKYWDQTYHPNC
Sbjct  4661  SYLMPVLSMTNCLAAETHKDCDFNKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQTYHPNC  4720

Query  299   VNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQD  358
             VNC DDRCILHCANFNVLFS V P TSFGP+VRKIFVDGVPF+VS GYH++ELG+V N D
Sbjct  4721  VNCSDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNMD  4780

Query  359   VNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKD  418
              N+H  RL+ KEL++YAADPAMH AS + L D RT CFSVAALT  + FQTV+PGNFNKD
Sbjct  4781  FNIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKD  4840

Query  419   FYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDK  478
             FYDF VS+GFFKEGSSV LKHFFFAQDG+AAI+DY YY YNLPTM DI+Q+LF +EVVDK
Sbjct  4841  FYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVDK  4900

Query  479   YFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPT  538
             YFD YDGGC+NA++VIVNNLDKSAG PFNK+GKAR+YY+SMSY++QD LFA TKRNV+PT
Sbjct  4901  YFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLPT  4960

Query  539   ITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGW  598
             ITQMNLKYAISAKNRARTVAGVSI STMTNRQ+HQK+LKS+AATRGAT VIGT+KFYGGW
Sbjct  4961  ITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW  5020

Query  599   HNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANE  658
               MLKT+Y DVE+PHLMGWDYPKCDRAMPNM RI+ASL+LARKH+TCC+ S RFYRLANE
Sbjct  5021  DFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANE  5080

Query  659   CAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADK  718
             CAQVLSE V+CGG  YVKPGGTSSGDATTAYANSVFNI QA TANV+AL+S +GN I D+
Sbjct  5081  CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDR  5140

Query  719   YVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVAS  778
              ++++Q  LY  +YR    D  FV+++YA+L KHFSMMILSDD VVC+NS YA++G VAS
Sbjct  5141  EIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVAS  5200

Query  779   IKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRIL  838
             I+NFK  LYYQNNVFMSEAKCW ET+L KGPHEFCSQHT+ +K GDD  +LPYPDPSRIL
Sbjct  5201  IQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRIL  5260

Query  839   GAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGH  898
              AGCFVDDIVKTDGT+M+ER+VSLAIDAYPLTKH + EY +VF +YLQYI KL+ +LTGH
Sbjct  5261  SAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTGH  5320

Query  899   MLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             MLD YSVML  D+++++WE  FY  +Y+  T LQ
Sbjct  5321  MLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ  5354


>sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus 
133/2005 OX=389230 GN=rep PE=3 SV=1
Length=7126

 Score = 1512 bits (3914),  Expect = 0.0, Method: Composition-based stats.
 Identities = 660/934 (71%), Positives = 778/934 (83%), Gaps = 3/934 (0%)

Query  2     ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDK--VAGFAKFLKTNCCRFQE  58
             +   +FLNRV G S  ARL PC +G +TDVVYRAFDI N K  VAG  K+ KTN CRF +
Sbjct  4428  SKDTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQ  4487

Query  59    KDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQR  118
              D++ + +DSYF+VKRHT SNY+ E+  Y+LLKDC AVA HDFF F +D    PHI RQ 
Sbjct  4488  VDDEGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQS  4547

Query  119   LTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANL  178
             LT+YTM DLVYALRHFD+ NC+ LK ILV Y CC+  YF+ K W+DFVENP ++ VY  L
Sbjct  4548  LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKL  4607

Query  179   GERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYY  238
             GER+RQA+L TV+ CD M  +G+VGVLTLDNQDLNG WYDFGDF+ T PG+GV +VDSYY
Sbjct  4608  GERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY  4667

Query  239   SLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNC  298
             S LMP+L++T  L AE+H D D  KP I+W LL+YD+T+ ++ LF++YFK+WDQTYHPNC
Sbjct  4668  SYLMPVLSMTNCLAAETHKDCDFNKPLIEWLLLEYDYTDYKIGLFNKYFKHWDQTYHPNC  4727

Query  299   VNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQD  358
             VNC DDRCILHCANFNVLFS V P TSFGP+VRKIFVDGVPF+VS GYH++ELG+V N D
Sbjct  4728  VNCGDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNMD  4787

Query  359   VNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKD  418
             VN+H  RL+ KEL++YAADPAMH AS + L D RT CFSVAALT  + FQTV+PGNFNKD
Sbjct  4788  VNIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKD  4847

Query  419   FYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDK  478
             FYDF VS+GFFKEGSSV LKHFFFAQDG+AAI+DY YY YNLPTM DI+Q+LF +EVVDK
Sbjct  4848  FYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVDK  4907

Query  479   YFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPT  538
             YFD YDGGC+NA++VIVNNLDKSAG PFNK+GKAR+YY+SMSY++QD LFA TKRNV+PT
Sbjct  4908  YFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLPT  4967

Query  539   ITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGW  598
             ITQMNLKYAISAKNRARTVAGVSI STMTNRQ+HQK+LKS+AATRGAT VIGT+KFYGGW
Sbjct  4968  ITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW  5027

Query  599   HNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANE  658
               MLKT+Y DVE+PHLMGWDYPKCDRAMPNM RI+ASL+LARKH+TCC+ S RFYRLANE
Sbjct  5028  DFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANE  5087

Query  659   CAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADK  718
             CAQVLSE V+CGG  YVKPGGTSSGDATTAYANSVFNI QA TANV+AL+S +GN I D+
Sbjct  5088  CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDR  5147

Query  719   YVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVAS  778
              ++++Q  LY  +YR    D  FV+++YA+L KHFSMMILSDD VVC+NS YA++G VAS
Sbjct  5148  EIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVAS  5207

Query  779   IKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRIL  838
             I+NFK  LYYQNNVFMSEAKCW ET+L KGPHEFCSQHT+ +K GDD  +LPYPDPSRIL
Sbjct  5208  IQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRIL  5267

Query  839   GAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGH  898
              AGCFVDDIVKTDGT+M+ER+VSLAIDAYPLTKH + EY +VF +YLQYI KL+ +LTGH
Sbjct  5268  SAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTGH  5327

Query  899   MLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             MLD YSVML  D+++++WE  FY  +Y+  T LQ
Sbjct  5328  MLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ  5361


>sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East 
respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012) 
OX=1263720 GN=rep PE=1 SV=1
Length=7078

 Score = 1505 bits (3896),  Expect = 0.0, Method: Composition-based stats.
 Identities = 663/934 (71%), Positives = 771/934 (83%), Gaps = 4/934 (0%)

Query  2     ADAQSFLNRVCGV-SAARLTPCGTGTSTDVVYRAFDIYN--DKVAGFAKFLKTNCCRFQE  58
             +   +FL RV G    AR+ PC +G STDVV+RAFDI N   KVAG  K+ KTN CRF E
Sbjct  4378  SKDSNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE  4437

Query  59    KDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQR  118
              D+  + +DSYFVVKRHT  NY+ E+  Y+LL+DC AVA HDFF F +D    PHI RQR
Sbjct  4438  LDDQGHHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQR  4497

Query  119   LTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANL  178
             LT+YTM DLVYALRHFD+ N + LK ILV Y CCD  YF  K W+DFVENP ++ VY  L
Sbjct  4498  LTEYTMMDLVYALRHFDQ-NSEVLKAILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKL  4556

Query  179   GERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYY  238
             GERVRQA+L TV+FCD M  AG+VGVLTLDNQDLNG WYDFGDF+ T PGSGV +VDSYY
Sbjct  4557  GERVRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYY  4616

Query  239   SLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNC  298
             S LMP+L++T  L AE+H D D  KP I+W L +YDFT+ +++LF++YFKYWDQTYH NC
Sbjct  4617  SYLMPVLSMTDCLAAETHRDCDFNKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHANC  4676

Query  299   VNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQD  358
             VNC DDRC+LHCANFNVLF+   P T FGP+VRKIFVDGVPFVVS GYH++ELG+V N D
Sbjct  4677  VNCTDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMNMD  4736

Query  359   VNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKD  418
             V+LH  RLS KEL++YAADPAMH AS N  LD RT+CFSVAALT  + FQTV+PGNFN+D
Sbjct  4737  VSLHRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFNQD  4796

Query  419   FYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDK  478
             FYDF VSKGFFKEGSSV LKHFFFAQDGNAAI+DY+YY YNLPTMCDI+Q+LF +EVV+K
Sbjct  4797  FYDFVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVVNK  4856

Query  479   YFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPT  538
             YF+ YDGGC+NA++V+VNNLDKSAG PFNK+GKAR+YY+SMSY++QD LFA TKRNVIPT
Sbjct  4857  YFEIYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVIPT  4916

Query  539   ITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGW  598
             +TQMNLKYAISAKNRARTVAGVSI STMTNRQ+HQK+LKS+AATRGAT VIGT+KFYGGW
Sbjct  4917  MTQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW  4976

Query  599   HNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANE  658
               MLKT+Y DV+NPHLMGWDYPKCDRAMPNM RI ASL+LARKH TCC+   RFYRLANE
Sbjct  4977  DFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLANE  5036

Query  659   CAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADK  718
             CAQVLSE V+CGG  YVKPGGTSSGDATTAYANSVFNI QA TANV+AL+  +GNKI DK
Sbjct  5037  CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIVDK  5096

Query  719   YVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVAS  778
              V+++Q  LY  +YR+   D  FV+++YA+L KHFSMMILSDD VVC+NS YA++G +A 
Sbjct  5097  EVKDMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYIAG  5156

Query  779   IKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRIL  838
             I+NFK  LYYQNNVFMSEAKCW ETDL KGPHEFCSQHT+ +K GDD  +LPYPDPSRIL
Sbjct  5157  IQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRIL  5216

Query  839   GAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGH  898
              AGCFVDDIVKTDGTLM+ERFVSLAIDAYPLTKH + EY +VF +YLQYI KL+ +LTGH
Sbjct  5217  SAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLTGH  5276

Query  899   MLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             MLD YSVML  DN++++WE  FY  +Y+  T LQ
Sbjct  5277  MLDSYSVMLCGDNSAKFWEEAFYRDLYSSPTTLQ  5310


>sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavirus 
(strain A59) OX=11142 GN=rep PE=1 SV=1
Length=7176

 Score = 1477 bits (3823),  Expect = 0.0, Method: Composition-based stats.
 Identities = 617/932 (66%), Positives = 742/932 (80%), Gaps = 5/932 (1%)

Query  2     ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD  60
             +   +FLNR+ G S  ARL PC +G  TDV  RAFDI N   AG   + K NCCRFQ  D
Sbjct  4455  SKDTNFLNRIRGTSVNARLVPCASGLDTDVQLRAFDICNANRAGIGLYYKVNCCRFQRVD  4514

Query  61    EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT  120
             ED N +D +FVVKR     Y  E+  Y L K+C  VA+H+FF F ++G  VPHI R+ L+
Sbjct  4515  EDGNKLDKFFVVKRTNLEVYNKEKECYELTKECGVVAEHEFFTFDVEGSRVPHIVRKDLS  4574

Query  121   KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE  180
             K+TM DL YALRHFD  +C TLKEIL+TY  C++ YF KKDWYDFVENPDI+ VY  LG 
Sbjct  4575  KFTMLDLCYALRHFDRNDCSTLKEILLTYAECEESYFQKKDWYDFVENPDIINVYKKLGP  4634

Query  181   RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL  240
                +ALL T +F DA+  AG+VGVLTLDNQDL G WYDFGDF++T PG GV V DSYYS 
Sbjct  4635  IFNRALLNTAKFADALVEAGLVGVLTLDNQDLYGQWYDFGDFVKTVPGCGVAVADSYYSY  4694

Query  241   LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN  300
             +MP+LT+  AL +E  V+      Y ++DL++YDFT+ +L+LF +YFK+W  TYHPN   
Sbjct  4695  MMPMLTMCHALDSELFVN----GTYREFDLVQYDFTDFKLELFTKYFKHWSMTYHPNTCE  4750

Query  301   CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN  360
             C DDRCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+
Sbjct  4751  CEDDRCIIHCANFNILFSMVLPKTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNMDVD  4810

Query  361   LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY  420
              H  RLS K+LL+YAADPA+H AS + LLD RT CFSVAA+T+ V FQTVKPGNFN+DFY
Sbjct  4811  THRYRLSLKDLLLYAADPALHVASASALLDLRTCCFSVAAITSGVKFQTVKPGNFNQDFY  4870

Query  421   DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF  480
             +F +SKG  KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV+KYF
Sbjct  4871  EFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVNKYF  4930

Query  481   DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT  540
             + Y+GGCI A QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+T
Sbjct  4931  EIYEGGCIPATQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLT  4990

Query  541   QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN  600
             QMNLKYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG  VVIGT+KFYGGW +
Sbjct  4991  QMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDD  5050

Query  601   MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA  660
             ML+ +  DV++P LMGWDYPKCDRAMPN+LRI++SLVLARKH +CCS + RFYRLANECA
Sbjct  5051  MLRRLIKDVDSPVLMGWDYPKCDRAMPNILRIVSSLVLARKHDSCCSHTDRFYRLANECA  5110

Query  661   QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV  720
             QVLSE+VMCGG  YVKPGGTSSGDATTA+ANSVFNICQAV+ANV +L++ +G+KI D  +
Sbjct  5111  QVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCSLMACNGHKIEDLSI  5170

Query  721   RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK  780
             R LQ RLY  +YR   VD  FV+E+Y +L KHFSMMILSDD VVC+NS +AS+G +A+I 
Sbjct  5171  RELQKRLYSNVYRADHVDPAFVSEYYEFLNKHFSMMILSDDGVVCYNSEFASKGYIANIS  5230

Query  781   NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA  840
              F+ VLYYQNNVFMSEAKCW ETD+ KGPHEFCSQHTMLVK   D VYLPYPDPSRILGA
Sbjct  5231  AFQQVLYYQNNVFMSEAKCWVETDIEKGPHEFCSQHTMLVKMDGDEVYLPYPDPSRILGA  5290

Query  841   GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML  900
             GCFVDD++KTD  L+IERFVSLAIDAYPL  H N EY +VF +YL+YI+KL+++L   +L
Sbjct  5291  GCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENPEYQNVFRVYLEYIKKLYNDLGNQIL  5350

Query  901   DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             D YSV+L+  +  ++ +  FY+ MY    VLQ
Sbjct  5351  DSYSVILSTCDGQKFTDETFYKNMYLRSAVLQ  5382


>sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavirus 
(strain 2) OX=76344 GN=rep PE=3 SV=1
Length=7124

 Score = 1476 bits (3821),  Expect = 0.0, Method: Composition-based stats.
 Identities = 618/932 (66%), Positives = 741/932 (80%), Gaps = 5/932 (1%)

Query  2     ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD  60
             +   +FLNRV G S  ARL PC +G  TDV  RAFDI N   AG   + K NCCRFQ  D
Sbjct  4403  SKDTNFLNRVRGTSVNARLVPCASGLDTDVQLRAFDICNANRAGIGLYYKVNCCRFQRAD  4462

Query  61    EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT  120
             ED N +D +FV+KR     Y  E+  Y L K+C  VA+H+FF F ++G  VPHI R+ L+
Sbjct  4463  EDGNTLDKFFVIKRTNLEVYNKEKECYELTKECGVVAEHEFFTFDVEGSRVPHIVRKDLS  4522

Query  121   KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE  180
             KYTM DL YALRHFD  +C TLKEIL+TY  CD+ YF KKDWYDFVEN DI+ VY  LG 
Sbjct  4523  KYTMLDLCYALRHFDRNDCSTLKEILLTYAECDESYFQKKDWYDFVENSDIINVYKKLGP  4582

Query  181   RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL  240
                +ALL T +F D +  AG+VGVLTLDNQDL G WYDFGDF++T PG GV V DSYYS 
Sbjct  4583  IFNRALLNTAKFADTLVEAGLVGVLTLDNQDLYGQWYDFGDFVKTVPGCGVAVADSYYSY  4642

Query  241   LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN  300
             +MP+LT+  AL +E  ++      Y ++DL++YDFT+ +L+LF++YFKYW  TYHPN   
Sbjct  4643  MMPMLTMCHALDSELFIN----GTYREFDLVQYDFTDFKLELFNKYFKYWSMTYHPNTCE  4698

Query  301   CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN  360
             C DDRCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+
Sbjct  4699  CEDDRCIIHCANFNILFSMVLPKTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNMDVD  4758

Query  361   LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY  420
              H  RLS K+LL+YAADPA+H AS + LLD RT CFSVAA+T+ V FQTVKPGNFN+DFY
Sbjct  4759  THRYRLSLKDLLLYAADPALHVASASALLDLRTCCFSVAAITSGVKFQTVKPGNFNQDFY  4818

Query  421   DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF  480
             +F +SKG  KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV+KYF
Sbjct  4819  EFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVNKYF  4878

Query  481   DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT  540
             + YDGGCI A QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+T
Sbjct  4879  EIYDGGCIPATQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEVYAYTKRNVLPTLT  4938

Query  541   QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN  600
             QMNLKYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG  VVIGT+KFYGGW +
Sbjct  4939  QMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDD  4998

Query  601   MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA  660
             ML+ +  DV++P LMGWDYPKCDRAMPN+LRI++SLVLARKH +CCS + RFYRLANECA
Sbjct  4999  MLRRLIKDVDSPVLMGWDYPKCDRAMPNILRIISSLVLARKHDSCCSHTDRFYRLANECA  5058

Query  661   QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV  720
             QVLSE+VMCGG  YVKPGGTSSGDATTA+ANSVFNICQAV+ANV +L++ +G+KI D  +
Sbjct  5059  QVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCSLMACNGHKIEDLSI  5118

Query  721   RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK  780
             R LQ RLY  +YR   VD  FVNE+Y +L KHFSMMILSDD VVC+NS +AS+G +A+I 
Sbjct  5119  RELQKRLYSNVYRADHVDPAFVNEYYEFLNKHFSMMILSDDGVVCYNSEFASKGYIANIS  5178

Query  781   NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA  840
              F+ VLYYQNNVFMSEAKCW ETD+ KGPHEFCSQHTMLVK   D VYLPYPDPSRILGA
Sbjct  5179  AFQQVLYYQNNVFMSEAKCWVETDIEKGPHEFCSQHTMLVKMDGDEVYLPYPDPSRILGA  5238

Query  841   GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML  900
             GCFVDD++KTD  L+IERFVSLAIDAYPL  H N EY +VF +YL+YI+KL+++L   +L
Sbjct  5239  GCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENPEYQNVFRVYLEYIKKLYNDLGNQIL  5298

Query  901   DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             D YSV+L+  +  ++ +  FY+ MY    V+Q
Sbjct  5299  DSYSVILSTCDGQKFTDETFYKNMYLRSAVMQ  5330


>sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus 
HKU9 OX=694006 GN=rep PE=1 SV=1
Length=6930

 Score = 1471 bits (3809),  Expect = 0.0, Method: Composition-based stats.
 Identities = 676/932 (73%), Positives = 770/932 (83%), Gaps = 1/932 (0%)

Query  2     ADAQSFLNRVCGVS-AARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD  60
             A  + FLNRV G S  ARL P G+G   D+V RAFDI N KVAGF   LK NCCR+QE D
Sbjct  4234  ARDECFLNRVRGTSGVARLVPLGSGVQPDIVLRAFDICNTKVAGFGLHLKNNCCRYQELD  4293

Query  61    EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT  120
              D   +DSYFVVKRHT SNY  E+  Y  LKDC  VA+HDFFKF I+G M PH+SR+RLT
Sbjct  4294  ADGTQLDSYFVVKRHTESNYLLEQRCYEKLKDCGVVARHDFFKFNIEGVMTPHVSRERLT  4353

Query  121   KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE  180
             KYTMADLVY+LRHFD  NCDTLKEILV   CC  DYF++KDWYD VENPDI+RVY NLGE
Sbjct  4354  KYTMADLVYSLRHFDNNNCDTLKEILVLRGCCTADYFDRKDWYDPVENPDIIRVYHNLGE  4413

Query  181   RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL  240
              VR+A+L  V+  D+M   G++GVLTLDNQDLNG WYDFGDFI+   G+GV V+D+YYSL
Sbjct  4414  TVRKAVLSAVKMADSMVEQGLIGVLTLDNQDLNGQWYDFGDFIEGPAGAGVAVMDTYYSL  4473

Query  241   LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN  300
              MP+ T+T  L AE HVD D +KP   WD+ KYD+T+ +  LF +YFKYWD  YHPNCV 
Sbjct  4474  AMPVYTMTNMLAAECHVDGDFSKPKRVWDICKYDYTQFKYSLFSKYFKYWDMQYHPNCVA  4533

Query  301   CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN  360
             C DDRCILHCANFN+LFS V P TSFGPLV+KI+VDGVPFVVSTGYH+RELGVV NQD+ 
Sbjct  4534  CADDRCILHCANFNILFSMVLPNTSFGPLVQKIYVDGVPFVVSTGYHYRELGVVMNQDIR  4593

Query  361   LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY  420
              H+ RLS +ELLVYAADPAMH A+ N L DKRT C SVAA+T  V FQTVKPG FN+DFY
Sbjct  4594  QHAQRLSLRELLVYAADPAMHVAASNALADKRTVCMSVAAMTTGVTFQTVKPGQFNEDFY  4653

Query  421   DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF  480
             +FAV  GFFKEGS++  KHFF+AQDGNAAISDYDYYRYNLPTMCDI+QLLF +EVVDKYF
Sbjct  4654  NFAVKCGFFKEGSTISFKHFFYAQDGNAAISDYDYYRYNLPTMCDIKQLLFSLEVVDKYF  4713

Query  481   DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT  540
             DCYDGGC+ A+QV+V N DKSAGFPFNK+GKARLYY+S+SY DQD LFAYTKRNV+PTIT
Sbjct  4714  DCYDGGCLQASQVVVANYDKSAGFPFNKFGKARLYYESLSYADQDELFAYTKRNVLPTIT  4773

Query  541   QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN  600
             QMNLKYAISAKNRARTVAGVSI STMTNRQFHQK+LKSIAA RGA+VVIGT+KFYGGW+ 
Sbjct  4774  QMNLKYAISAKNRARTVAGVSIASTMTNRQFHQKMLKSIAAARGASVVIGTTKFYGGWNR  4833

Query  601   MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA  660
             ML+T+   VENPHLMGWDYPKCDRAMPN+LRI ASL+LARKH TCC+ S RFYRLANECA
Sbjct  4834  MLRTLCEGVENPHLMGWDYPKCDRAMPNLLRIFASLILARKHATCCNASERFYRLANECA  4893

Query  661   QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV  720
             QVLSEMV+CGG  YVKPGGTSSGD+TTAYANSVFNICQAV+AN+N  LS DGNKI   YV
Sbjct  4894  QVLSEMVLCGGGFYVKPGGTSSGDSTTAYANSVFNICQAVSANLNTFLSIDGNKIYTTYV  4953

Query  721   RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK  780
             + LQ RLY  +YR+  VD + V ++Y YLRKHFSMMILSDD VVC+N+ YA +G VA I+
Sbjct  4954  QELQRRLYLGIYRSNTVDNELVLDYYNYLRKHFSMMILSDDGVVCYNADYAQKGYVADIQ  5013

Query  781   NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA  840
              FK +LY+QNNVFMSE+KCW E D+TKGPHEFCSQHTMLV    + VYLPYPDPSRILGA
Sbjct  5014  GFKELLYFQNNVFMSESKCWVEPDITKGPHEFCSQHTMLVDMKGEQVYLPYPDPSRILGA  5073

Query  841   GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML  900
             GCFVDD++KTDGTLM+ER+VSLAIDAYPLTKHP+ EY +VF  YLQYI+KLH+ELTGH+L
Sbjct  5074  GCFVDDLLKTDGTLMMERYVSLAIDAYPLTKHPDPEYQNVFWCYLQYIKKLHEELTGHLL  5133

Query  901   DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             D YSVML +DN S+YWE EFYE MY     LQ
Sbjct  5134  DTYSVMLASDNASKYWEVEFYENMYMESATLQ  5165


>sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavirus 
(strain JHM) OX=11144 GN=rep PE=1 SV=1
Length=7180

 Score = 1464 bits (3791),  Expect = 0.0, Method: Composition-based stats.
 Identities = 613/932 (66%), Positives = 738/932 (79%), Gaps = 5/932 (1%)

Query  2     ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD  60
             +   +FLNRV G S  ARL PC +G  TDV  RAFDI N   AG   + K NC RFQ  D
Sbjct  4461  SKDTNFLNRVRGTSVNARLVPCASGLDTDVQLRAFDICNANRAGIGLYYKVNCFRFQRVD  4520

Query  61    EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT  120
             E+ N +D +FVVKR     Y  E+  Y L KDC  VA+H+FF F ++G  VPHI R+ L+
Sbjct  4521  EEGNKLDKFFVVKRTNLEVYNKEKECYELTKDCGVVAEHEFFTFDVEGSRVPHIVRKDLS  4580

Query  121   KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE  180
             K+TM DL YALRHFD  +C TLKEIL+TY  CD+ YF KKDWYDFVENPDI+ VY  LG 
Sbjct  4581  KFTMLDLCYALRHFDRNDCSTLKEILLTYAECDESYFQKKDWYDFVENPDIINVYKKLGP  4640

Query  181   RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL  240
                +ALL T  F D +  AG+VGVLTLDNQDL G WYDFGDF++T P  GV V DSYYS 
Sbjct  4641  IFNRALLNTANFADTLVEAGLVGVLTLDNQDLYGQWYDFGDFVKTVPCCGVAVADSYYSY  4700

Query  241   LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN  300
             +MP+LT+  AL +E  V+      Y ++DL++YDFT+ +L+LF++YFK+W  TYHPN   
Sbjct  4701  MMPMLTMCHALDSELFVN----GTYREFDLVQYDFTDFKLELFNKYFKHWSMTYHPNTSE  4756

Query  301   CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN  360
             C DDRCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+
Sbjct  4757  CEDDRCIIHCANFNILFSMVLPKTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNMDVD  4816

Query  361   LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY  420
              H  RLS K+LL+YAADPA+H AS + LLD RT CFSVAA+T+ V FQTVKPGNFN+DFY
Sbjct  4817  THRYRLSLKDLLLYAADPALHVASASALLDLRTCCFSVAAITSGVKFQTVKPGNFNQDFY  4876

Query  421   DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF  480
             +F +SKG  KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFVVEVV+KYF
Sbjct  4877  EFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVVEVVNKYF  4936

Query  481   DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT  540
             + Y+GGCI A QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+T
Sbjct  4937  EIYEGGCIPATQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLT  4996

Query  541   QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN  600
             QMNLKYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG  VVIGT+KFYGGW +
Sbjct  4997  QMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDD  5056

Query  601   MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA  660
             ML+ +  DV++P LMGWDYPKCDRAMPN+LRI++SLVLARKH +CCS + RFYRLANECA
Sbjct  5057  MLRRLIKDVDSPVLMGWDYPKCDRAMPNILRIVSSLVLARKHDSCCSHTDRFYRLANECA  5116

Query  661   QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV  720
             QVL E+VMCGG  YVKPGGTSSGDATTA+ANSVFNICQAV+ANV +L++ +G+KI D  +
Sbjct  5117  QVLGEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCSLMACNGHKIEDLSI  5176

Query  721   RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK  780
             R LQ RLY  +YR   VD  FV+E+Y +L KHFSM+ILSDD VVC+NS +AS+G +A+I 
Sbjct  5177  RELQKRLYSNVYRADHVDPAFVSEYYEFLNKHFSMIILSDDGVVCYNSEFASKGYIANIS  5236

Query  781   NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA  840
             +F+ VLYYQNNVFMSEAKCW ETD+ KGPHEFCSQHTMLVK   D VYLPYPDPSRILGA
Sbjct  5237  DFQQVLYYQNNVFMSEAKCWVETDIEKGPHEFCSQHTMLVKMDGDEVYLPYPDPSRILGA  5296

Query  841   GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML  900
             GCFVDD++KTD  L+IERFVSLAIDAYPL  H N EY +VF +YL+YI+KL+++L   +L
Sbjct  5297  GCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENPEYQNVFRVYLEYIKKLYNDLGNQIL  5356

Query  901   DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             D  SV+L+  +  ++ +  FY+ MY    V+Q
Sbjct  5357  DSISVILSTCDGQKFTDETFYKNMYLRSAVMQ  5388


>sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavirus 
(strain 98TXSF-110-LUN) OX=233264 GN=rep PE=3 SV=1
Length=7094

 Score = 1459 bits (3778),  Expect = 0.0, Method: Composition-based stats.
 Identities = 613/932 (66%), Positives = 733/932 (79%), Gaps = 5/932 (1%)

Query  2     ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD  60
             +   +FLNRV G S  ARL PC +G STDV  RAFDI N  VAG    LK NCCRFQ  D
Sbjct  4370  SKDTNFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICNASVAGIGLHLKVNCCRFQRVD  4429

Query  61    EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT  120
             E+ + +D +FVVKR   + Y  E   Y  +KDC  VA+HDFF F ++G  VPHI R+ LT
Sbjct  4430  ENGDKLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLT  4489

Query  121   KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE  180
             KYTM DL YALRHFD  +C  L +IL  Y  C+  YF KKDWYDFVENPDI+ VY  LG 
Sbjct  4490  KYTMLDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGP  4549

Query  181   RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL  240
                +AL+   +F D +   G+VG+LTLDNQDLNG WYDFGD++   PG GV + DSYYS 
Sbjct  4550  IFNRALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSY  4609

Query  241   LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN  300
             +MP+LT+  AL  E +V+      Y  +DL++YDFT+ +L+LF++YFK+W   YHPN V+
Sbjct  4610  MMPMLTMCHALDCELYVN----NAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTVD  4665

Query  301   CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN  360
             C DDRCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELG+V N DV+
Sbjct  4666  CQDDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDVD  4725

Query  361   LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY  420
              H  RLS K+LL+YAADPA+H AS + L D RT CFSVAA+T+ V FQTVKPGNFN+DFY
Sbjct  4726  THRYRLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFY  4785

Query  421   DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF  480
             DF +SKG  KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF
Sbjct  4786  DFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYF  4845

Query  481   DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT  540
             + YDGGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+T
Sbjct  4846  EIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLT  4905

Query  541   QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN  600
             QMNLKYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG  VVIGT+KFYGGW +
Sbjct  4906  QMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDD  4965

Query  601   MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA  660
             ML+ +  DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH  CCS S RFYRLANECA
Sbjct  4966  MLRRLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANECA  5025

Query  661   QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV  720
             QVLSE+VMCGG  YVKPGGTSSGDATTA+ANSVFNICQAV+ANV AL+S +GNKI D  +
Sbjct  5026  QVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLSI  5085

Query  721   RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK  780
             R LQ RLY  +YR+  VD+ FV E+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I 
Sbjct  5086  RALQKRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANIS  5145

Query  781   NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA  840
              F+ VLYYQNNVFMSE+KCW E D+  GPHEFCSQHTMLVK   D VYLPYPDPSRILGA
Sbjct  5146  AFQQVLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVYLPYPDPSRILGA  5205

Query  841   GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML  900
             GCFVDD++KTD  L+IERFVSLAIDAYPL  H N+EY  VF +YL+YI+KL+++L   +L
Sbjct  5206  GCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNDLGNQIL  5265

Query  901   DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             D YSV+L+  +  ++ +  FY+ MY    V+Q
Sbjct  5266  DSYSVILSTCDGQKFTDESFYKNMYLRSAVMQ  5297


>sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavirus 
(strain 98TXSF-110-ENT) OX=233262 GN=rep PE=3 SV=1
Length=7094

 Score = 1459 bits (3778),  Expect = 0.0, Method: Composition-based stats.
 Identities = 613/932 (66%), Positives = 733/932 (79%), Gaps = 5/932 (1%)

Query  2     ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD  60
             +   +FLNRV G S  ARL PC +G STDV  RAFDI N  VAG    LK NCCRFQ  D
Sbjct  4370  SKDTNFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICNASVAGIGLHLKVNCCRFQRVD  4429

Query  61    EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT  120
             E+ + +D +FVVKR   + Y  E   Y  +KDC  VA+HDFF F ++G  VPHI R+ LT
Sbjct  4430  ENGDKLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLT  4489

Query  121   KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE  180
             KYTM DL YALRHFD  +C  L +IL  Y  C+  YF KKDWYDFVENPDI+ VY  LG 
Sbjct  4490  KYTMLDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGP  4549

Query  181   RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL  240
                +AL+   +F D +   G+VG+LTLDNQDLNG WYDFGD++   PG GV + DSYYS 
Sbjct  4550  IFNRALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSY  4609

Query  241   LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN  300
             +MP+LT+  AL  E +V+      Y  +DL++YDFT+ +L+LF++YFK+W   YHPN V+
Sbjct  4610  MMPMLTMCHALDCELYVN----NAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTVD  4665

Query  301   CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN  360
             C DDRCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELG+V N DV+
Sbjct  4666  CQDDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDVD  4725

Query  361   LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY  420
              H  RLS K+LL+YAADPA+H AS + L D RT CFSVAA+T+ V FQTVKPGNFN+DFY
Sbjct  4726  THRYRLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFY  4785

Query  421   DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF  480
             DF +SKG  KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF
Sbjct  4786  DFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYF  4845

Query  481   DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT  540
             + YDGGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+T
Sbjct  4846  EIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLT  4905

Query  541   QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN  600
             QMNLKYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG  VVIGT+KFYGGW +
Sbjct  4906  QMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDD  4965

Query  601   MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA  660
             ML+ +  DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH  CCS S RFYRLANECA
Sbjct  4966  MLRRLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANECA  5025

Query  661   QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV  720
             QVLSE+VMCGG  YVKPGGTSSGDATTA+ANSVFNICQAV+ANV AL+S +GNKI D  +
Sbjct  5026  QVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLSI  5085

Query  721   RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK  780
             R LQ RLY  +YR+  VD+ FV E+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I 
Sbjct  5086  RALQKRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANIS  5145

Query  781   NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA  840
              F+ VLYYQNNVFMSE+KCW E D+  GPHEFCSQHTMLVK   D VYLPYPDPSRILGA
Sbjct  5146  AFQQVLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVYLPYPDPSRILGA  5205

Query  841   GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML  900
             GCFVDD++KTD  L+IERFVSLAIDAYPL  H N+EY  VF +YL+YI+KL+++L   +L
Sbjct  5206  GCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNDLGNQIL  5265

Query  901   DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             D YSV+L+  +  ++ +  FY+ MY    V+Q
Sbjct  5266  DSYSVILSTCDGQKFTDESFYKNMYLRSAVMQ  5297


>sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus 
512/2005 OX=693999 GN=rep PE=3 SV=1
Length=6793

 Score = 1459 bits (3778),  Expect = 0.0, Method: Composition-based stats.
 Identities = 560/930 (60%), Positives = 706/930 (76%), Gaps = 6/930 (1%)

Query  4     AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDD  63
                +LNRV G SAARL P   G+ T  V+RAFD+YN  VA  +KFLK NC R +  D+  
Sbjct  4114  DSGYLNRVRGSSAARLEPL-NGSDTHHVFRAFDVYNRDVACISKFLKVNCVRLKNLDKH-  4171

Query  64    NLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYT  123
                D++++VK+ T S  +HE++IYNL+ DC AVAKHDFF ++    +  ++ RQ LT+YT
Sbjct  4172  ---DAFWIVKKCTKSVMEHEQSIYNLISDCGAVAKHDFFTWKEGRSVYGNVCRQDLTEYT  4228

Query  124   MADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVR  183
             M DL YALR+FDE NC+TLK+ILV    CD+ YF+ K W+D VEN D+ RVYA LG  V 
Sbjct  4229  MMDLCYALRNFDENNCETLKKILVVVGACDESYFDNKLWFDPVENEDVHRVYAKLGTIVA  4288

Query  184   QALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMP  243
             +A+LK V++CDAM   GIVGV+TLDNQDLNG++YDFGDF+ +  G GVP+  SYYS +MP
Sbjct  4289  RAMLKCVKYCDAMVEQGIVGVITLDNQDLNGDFYDFGDFVTSVKGMGVPICTSYYSYMMP  4348

Query  244   ILTLTRALTAESHVDTD-LTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCL  302
             ++ +T  L +E  + +D   + +  +DLL YDFTE ++ LF++YFK+W QTYHPNC +C 
Sbjct  4349  VMGMTNCLASECFIKSDIFGEDFRTFDLLAYDFTEHKVNLFNKYFKHWGQTYHPNCEDCH  4408

Query  303   DDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLH  362
             D+ CI+HCANFN LF+T  P T+FGPL RK ++DGVP V + GYHF++LG+V N+D+NLH
Sbjct  4409  DESCIVHCANFNTLFATTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNKDLNLH  4468

Query  363   SSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDF  422
             SSRL+  ELL + ADP++  AS   L+DKRT CFSVAAL   +  QTVKPG+FN++FYDF
Sbjct  4469  SSRLTINELLQFCADPSLLIASSPALVDKRTVCFSVAALGTGMTNQTVKPGHFNREFYDF  4528

Query  423   AVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDC  482
               S+GFF+EGS + LKHFFFAQ G+AA+ D+DYYRYN  T+ DI Q   V ++V  YF  
Sbjct  4529  LRSQGFFEEGSELTLKHFFFAQKGDAAVRDFDYYRYNRTTVLDICQARVVYQIVQCYFGM  4588

Query  483   YDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQM  542
             Y+GGCI A +VIVNNL+KSAG+PFNK+GKA LYYDS+SYE+QD L+AYTKRN+IPT+TQ+
Sbjct  4589  YEGGCITAKEVIVNNLNKSAGYPFNKFGKAGLYYDSLSYEEQDDLYAYTKRNIIPTMTQL  4648

Query  543   NLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML  602
             NLKYAIS K+RARTV GVS+ STMT RQ+HQK LKSI  TRGA+VVIGT+KFYGGW NML
Sbjct  4649  NLKYAISGKDRARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWDNML  4708

Query  603   KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQV  662
             KT+  DVENPHLMGWDYPKCDRA+PNM+R++++++L  KH  CCS S R+YRL NE AQV
Sbjct  4709  KTLIKDVENPHLMGWDYPKCDRALPNMIRMISAMILGSKHVNCCSSSDRYYRLCNELAQV  4768

Query  663   LSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRN  722
             L+EMV   G  YVKPGGT+SGDATTAYANSVFNI QA +ANVN LLS D N   +  V+ 
Sbjct  4769  LTEMVYSNGGFYVKPGGTTSGDATTAYANSVFNIFQATSANVNRLLSVDSNTCNNIEVKQ  4828

Query  723   LQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNF  782
             LQ +LY+C YR+  VD  FV E++ YLRKHFSMMILSDD VVC+NS YA+ G VA +  F
Sbjct  4829  LQRKLYDCCYRSSSVDQSFVEEYFGYLRKHFSMMILSDDGVVCYNSEYAALGYVADLNAF  4888

Query  783   KSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGC  842
             K+VLYYQNNVFMS +KCW E D+ KGPHEFCSQHTM +   D   YLPYPDPSRIL AG 
Sbjct  4889  KAVLYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKDGTYYLPYPDPSRILSAGV  4948

Query  843   FVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDM  902
             FVDDIVKTD  +++ER+VSLAIDAYPL+KH N EY  VF + L +++ L+  L   +LD 
Sbjct  4949  FVDDIVKTDPVILLERYVSLAIDAYPLSKHDNPEYRRVFTVMLDWVKHLYKTLNQGVLDS  5008

Query  903   YSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             +SV L  D T+++W+  FY +MY   +VLQ
Sbjct  5009  FSVTLLEDATAKFWDESFYASMYEQSSVLQ  5038


>sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavirus 
(strain Quebec) OX=11133 GN=rep PE=3 SV=1
Length=7059

 Score = 1457 bits (3771),  Expect = 0.0, Method: Composition-based stats.
 Identities = 613/932 (66%), Positives = 731/932 (78%), Gaps = 5/932 (1%)

Query  2     ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD  60
             +   +FLNRV G S  ARL PC +G STDV  RAFDI N  VAG    LK NCCRFQ  D
Sbjct  4370  SKDTNFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICNASVAGIGLHLKVNCCRFQRVD  4429

Query  61    EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT  120
             E+ + +D +FVVKR   + Y  E   Y  +KDC  VA+HDFF F ++G  VPHI R+ LT
Sbjct  4430  ENGDKLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLT  4489

Query  121   KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE  180
             KYTM DL YALRHFD  +C  L +IL  Y  C+  YF KKDWYDFVENPDI+ VY  LG 
Sbjct  4490  KYTMLDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGP  4549

Query  181   RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL  240
                +AL+   +F D +   G+VG+LTLDNQDLNG WYDFGD++   PG GV + DSYYS 
Sbjct  4550  IFNRALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSY  4609

Query  241   LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN  300
             +MP+LT+  AL  E +V+      Y  +DL++YDFT+ +L+LF++YFK+W   YHPN V+
Sbjct  4610  MMPMLTMCHALDCELYVN----NAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTVD  4665

Query  301   CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN  360
             C DDRCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELG+V N DV+
Sbjct  4666  CQDDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDVD  4725

Query  361   LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY  420
              H  RLS K+LL+YAADPA+H AS + L D RT CFSVAA+T+ V FQTVKPGNFN+DFY
Sbjct  4726  THRYRLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFY  4785

Query  421   DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF  480
             DF +SKG  KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF
Sbjct  4786  DFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYF  4845

Query  481   DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT  540
             + YDGGCI A QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+T
Sbjct  4846  EIYDGGCIPAAQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLT  4905

Query  541   QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN  600
             QMNLKYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG  VVIGT+KFYGGW +
Sbjct  4906  QMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDD  4965

Query  601   MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA  660
             ML+ +  DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH  CCS S RFYRLANECA
Sbjct  4966  MLRRLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANECA  5025

Query  661   QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV  720
             QVLSE+VMCGG  YVKPGGTSSGDATTA+ANSVFNICQAV+ANV AL+S +GNKI D  +
Sbjct  5026  QVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLSI  5085

Query  721   RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK  780
             R LQ RLY  +YR+  VD+ FV E+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I 
Sbjct  5086  RALQKRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANIS  5145

Query  781   NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA  840
              F+ VLYYQNNVFMSE+KCW E D+  GPHEFCSQHTMLVK   D VYLPYP PSRILGA
Sbjct  5146  AFQQVLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVYLPYPVPSRILGA  5205

Query  841   GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML  900
             GCFVDD++KTD  L+IERFVSLAIDAYPL  H N+EY  VF +YL+YI+KL++EL   +L
Sbjct  5206  GCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNELGNQIL  5265

Query  901   DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             D YSV+L+  +  ++ +  FY+ MY    V+Q
Sbjct  5266  DSYSVILSTCDGQKFTDESFYKNMYLRSAVMQ  5297


>sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavirus 
OC43 OX=31631 GN=rep PE=1 SV=1
Length=7095

 Score = 1455 bits (3766),  Expect = 0.0, Method: Composition-based stats.
 Identities = 615/932 (66%), Positives = 734/932 (79%), Gaps = 5/932 (1%)

Query  2     ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD  60
             +   +FLNRV G S  ARL PC +G STDV  RAFDIYN  VAG    LK NCCRFQ  D
Sbjct  4370  SKDTNFLNRVRGASVDARLVPCASGLSTDVQLRAFDIYNASVAGIGLHLKVNCCRFQRVD  4429

Query  61    EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT  120
             E+ + +D +FVVKR   + Y  E   Y  +KDC  VA+HDFF F ++G  VPHI R+ LT
Sbjct  4430  ENGDKLDQFFVVKRTDLTIYNREMKCYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLT  4489

Query  121   KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE  180
             KYTM DL YALRHFD  +C  L +IL  Y  C+  YF KKDWYDFVENPDI+ VY  LG 
Sbjct  4490  KYTMLDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGP  4549

Query  181   RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL  240
                +AL+   +F D +   G+VGVLTLDNQDLNG WYDFGD++   PG GV + DSYYS 
Sbjct  4550  IFNRALVSATEFADKLVEVGLVGVLTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSY  4609

Query  241   LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN  300
             +MP+LT+  AL  E +V+      Y  +DL++YDFT+ +L+LF++YFK+W   YHPN V+
Sbjct  4610  IMPMLTMCHALDCELYVN----NAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTVD  4665

Query  301   CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN  360
             C DDRCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELG+V N DV+
Sbjct  4666  CQDDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDVD  4725

Query  361   LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY  420
              H  RLS K+LL+YAADPA+H AS + L D RT CFSVAA+T+ V FQTVKPGNFN+DFY
Sbjct  4726  THRYRLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFY  4785

Query  421   DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF  480
             DF +SKG  KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF
Sbjct  4786  DFVLSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYF  4845

Query  481   DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT  540
             + YDGGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+T
Sbjct  4846  EIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLT  4905

Query  541   QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN  600
             QMNLKYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG  VVIGT+KFYGGW +
Sbjct  4906  QMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDD  4965

Query  601   MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA  660
             ML+ +  DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH TCCS S RFYRLANECA
Sbjct  4966  MLRRLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHETCCSQSDRFYRLANECA  5025

Query  661   QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV  720
             QVLSE+VMCGG  YVKPGGTSSGDATTA+ANSVFNICQAV+ANV AL+S +GNKI D  +
Sbjct  5026  QVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLSI  5085

Query  721   RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK  780
             R LQ RLY  +YR+  VD+ FV E+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I 
Sbjct  5086  RALQKRLYSHVYRSDKVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANIS  5145

Query  781   NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA  840
              F+ VLYYQNNVFMSE+KCW E D+  GPHEFCSQHTMLVK   D VYLPYP+PSRILGA
Sbjct  5146  AFQQVLYYQNNVFMSESKCWVEHDINNGPHEFCSQHTMLVKMDGDDVYLPYPNPSRILGA  5205

Query  841   GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML  900
             GCFVDD++KTD  L+IERFVSLAIDAYPL  H N+EY  VF +YL YI+KL+++L   +L
Sbjct  5206  GCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLAYIKKLYNDLGNQIL  5265

Query  901   DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             D YSV+L+  +  ++ +  FY+ MY    V+Q
Sbjct  5266  DSYSVILSTCDGQKFTDESFYKNMYLRSAVMQ  5297


>sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemic 
diarrhea virus (strain CV777) OX=229032 GN=rep PE=1 SV=1
Length=6781

 Score = 1452 bits (3760),  Expect = 0.0, Method: Composition-based stats.
 Identities = 556/932 (60%), Positives = 701/932 (75%), Gaps = 6/932 (1%)

Query  2     ADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDE  61
             +   ++LNRV G SAARL PC  GT T  VYRAFDIYN  VA   KFLK NC R +  D+
Sbjct  4101  STDMAYLNRVRGSSAARLEPC-NGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLKNLDK  4159

Query  62    DDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTK  121
                  D+++VVKR T S  +HE++IY+ L+ C A+A+HDFF ++    +  ++ R+ LT+
Sbjct  4160  H----DAFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKDLTE  4215

Query  122   YTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGER  181
             YTM DL YALR+FDE NCD LK IL+    C++ YFN K W+D VEN DI RVYA LG  
Sbjct  4216  YTMMDLCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALLGTI  4275

Query  182   VRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLL  241
             V +A+LK V+FCDAM   GIVGV+TLDNQDLNG++YDFGDF  +  G GVP+  SYYS +
Sbjct  4276  VARAMLKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICTSYYSYM  4335

Query  242   MPILTLTRALTAESHVDTD-LTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN  300
             MP++ +T  L +E  V +D   + +  +DLL+YDFTE +  LF++YFKYW   YHPNCV+
Sbjct  4336  MPVMGMTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPNCVD  4395

Query  301   CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN  360
             C D++CI+HCANFN LFST  P T+FGPL RK ++DGVP V + GYHF++LG+V N D+N
Sbjct  4396  CSDEQCIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNNDLN  4455

Query  361   LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY  420
             LHSSRLS  ELL + +DPA+  AS   L+D+RT CFSVAAL   +  QTVKPG+FNK+FY
Sbjct  4456  LHSSRLSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGHFNKEFY  4515

Query  421   DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF  480
             DF + +GFF EGS + LKHFFFAQ  +AA+ D+DYYRYN PT+ DI Q   V ++V +YF
Sbjct  4516  DFLLEQGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQIVQRYF  4575

Query  481   DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT  540
             D Y+GGCI A +V+V NL+KSAG+P NK+GKA LYY+S+SYE+QD L+AYTKRN++PT+T
Sbjct  4576  DIYEGGCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTMT  4635

Query  541   QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN  600
             Q+NLKYAIS K RARTV GVS+ STMT RQ+HQK LKSI  TRGA+VVIGT+KFYGGW N
Sbjct  4636  QLNLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWDN  4695

Query  601   MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA  660
             MLK +   VENP LMGWDYPKCDRA+PNM+R++++++L  KHTTCCS + RF+RL NE A
Sbjct  4696  MLKNLIDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNELA  4755

Query  661   QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV  720
             QVL+E+V   G  Y+KPGGT+SGDATTAYANSVFNI QAV+ANVN LLS D N   +  V
Sbjct  4756  QVLTEVVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHNLEV  4815

Query  721   RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK  780
             + LQ +LYEC YR+  VD  FV E+Y YLRKHFSMMILSDD VVC+N+ YAS G VA + 
Sbjct  4816  KQLQRKLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVADLN  4875

Query  781   NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA  840
              FK+VLYYQNNVFMS +KCW E D+ KGPHEFCSQHTM +   +   YLPYPDPSRIL A
Sbjct  4876  AFKAVLYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKEGTYYLPYPDPSRILSA  4935

Query  841   GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML  900
             G FVDD+VKTD  +++ER+VSLAIDAYPL+KH N EY  VF++ L +++ L+  L   +L
Sbjct  4936  GVFVDDVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNAGVL  4995

Query  901   DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             + +SV L  D+T+++W+  FY  MY    VLQ
Sbjct  4996  ESFSVTLLEDSTAKFWDESFYANMYEKSAVLQ  5027


>sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavirus 
(strain Mebus) OX=11132 GN=rep PE=3 SV=1
Length=7094

 Score = 1451 bits (3756),  Expect = 0.0, Method: Composition-based stats.
 Identities = 612/932 (66%), Positives = 731/932 (78%), Gaps = 5/932 (1%)

Query  2     ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD  60
             +   +FLNRV G S  ARL PC +G STDV  RAFDI N  VAG    LK NCCRFQ  D
Sbjct  4370  SKDTNFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICNASVAGIGLHLKVNCCRFQRVD  4429

Query  61    EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT  120
             E+ + +D +FVVKR   + Y  E   Y  +KDC  VA+HDFF F ++G  VPHI R+ LT
Sbjct  4430  ENGDKLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLT  4489

Query  121   KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE  180
             KYTM DL YALRHFD  +C  L +IL  Y  C+  YF KKDWYDFVENPDI+ VY  LG 
Sbjct  4490  KYTMLDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGP  4549

Query  181   RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL  240
                +AL+   +F D +   G+VG+LTLDNQDLNG WYDFGD++   PG GV + DSYYS 
Sbjct  4550  IFNRALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSY  4609

Query  241   LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN  300
             +MP+LT+  AL  E +V+      Y  +DL++YDFT+ +L+LF++YFK+W   YHPN V+
Sbjct  4610  MMPMLTMCHALDCELYVN----NAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTVD  4665

Query  301   CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN  360
             C DDRCI+ CANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELG+V N DV+
Sbjct  4666  CQDDRCIIRCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDVD  4725

Query  361   LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY  420
              H  RLS K+LL+YAADPA+H AS + L D RT CFSVAA+T+ V FQTVKPGNFN+DFY
Sbjct  4726  THRYRLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFY  4785

Query  421   DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF  480
             DF +SKG  KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF
Sbjct  4786  DFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYF  4845

Query  481   DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT  540
             + YDGGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+T
Sbjct  4846  EIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLT  4905

Query  541   QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN  600
             QMNLKYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG  VVIGT+KFYGGW +
Sbjct  4906  QMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDD  4965

Query  601   MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA  660
             ML+ +  DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH  CCS S RFYRLANE A
Sbjct  4966  MLRRLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANEYA  5025

Query  661   QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV  720
             QVLSE+VMCGG  YVKPGGTSSGDATTA+ANSVFNICQAV+ANV AL+S +GNKI D  +
Sbjct  5026  QVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLSI  5085

Query  721   RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK  780
             R LQ RLY  +YR+  VD+ FV E+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I 
Sbjct  5086  RALQKRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANIS  5145

Query  781   NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA  840
              F+ VLYYQNNVFMSE+KCW E D+  GPHEFCSQHTMLVK   D VYLPYPDPSRILGA
Sbjct  5146  AFQQVLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVYLPYPDPSRILGA  5205

Query  841   GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML  900
             GCFVDD++KTD  L+IERFVSLAIDAYPL  H N+EY  VF +YL+YI+KL++EL   +L
Sbjct  5206  GCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNELGNQIL  5265

Query  901   DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             D YSV+L+  +  ++ +  FY+ MY    V+Q
Sbjct  5266  DSYSVILSTCDGQKFTDESFYKNMYLRSAVMQ  5297


>sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavirus 
HKU1 (isolate N5) OX=443241 GN=rep PE=3 SV=1
Length=7132

 Score = 1451 bits (3755),  Expect = 0.0, Method: Composition-based stats.
 Identities = 622/932 (67%), Positives = 736/932 (79%), Gaps = 5/932 (1%)

Query  2     ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD  60
             +   +FLNRV G S  ARL PC +G STDV  RAFDI N   AG   + K NCCRFQ  D
Sbjct  4408  SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRID  4467

Query  61    EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT  120
             +D N +D +FVVKR     Y  E+T Y L K C  VA+HDFF F IDG  VPHI R+ L+
Sbjct  4468  DDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRRNLS  4527

Query  121   KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE  180
             KYTM DL YALRHFD  +C  L EIL  Y  C + YF+KKDWYDFVENPDI+ +Y  LG 
Sbjct  4528  KYTMLDLCYALRHFDRNDCSILCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGP  4587

Query  181   RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL  240
                +ALL TV F D +   G+VGVLTLDNQDL G WYDFGDFIQT PG GV V DSYYS 
Sbjct  4588  IFNRALLNTVIFADTLVEVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSY  4647

Query  241   LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN  300
             +MP+LT+   L  E  V+      Y ++DL++YDFT+ +L+LF++YFKYW   YHPN V+
Sbjct  4648  MMPMLTMCHVLDCELFVN----DSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVD  4703

Query  301   CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN  360
             C +DRCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+
Sbjct  4704  CDNDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVD  4763

Query  361   LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY  420
              H  RLS K+LL+YAADPAMH AS + LLD RT CFSVAA+T+ + FQTVKPGNFN+DFY
Sbjct  4764  THRYRLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFY  4823

Query  421   DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF  480
             +F  SKG FKEGS+V+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF
Sbjct  4824  EFVKSKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYF  4883

Query  481   DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT  540
             + YDGGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+Q+ ++AYTKRNV+PT+T
Sbjct  4884  EIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLT  4943

Query  541   QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN  600
             QMNLKYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG  VVIGT+KFYGGW +
Sbjct  4944  QMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDD  5003

Query  601   MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA  660
             ML+ +  DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH  CCS   RFYRLANECA
Sbjct  5004  MLRHLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECA  5063

Query  661   QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV  720
             QVLSE+VMCGG  YVKPGGTSSGDATTA+ANSVFNICQAVTANV +L++ +G+KI D  +
Sbjct  5064  QVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSI  5123

Query  721   RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK  780
             RNLQ RLY  +YR   VD  FVNE+Y +L KHFSMMILSDD VVC+NS YA++G +A+I 
Sbjct  5124  RNLQKRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYANKGYIANIS  5183

Query  781   NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA  840
              F+ VLYYQNNVFMSE+KCW E D+T GPHEFCSQHTMLVK   DYVYLPYPDPSRILGA
Sbjct  5184  AFQQVLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGA  5243

Query  841   GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML  900
             GCFVDD++KTD  L+IERFVSLAIDAYPL  H N+EY  VF +YL+YI+KL+++L   +L
Sbjct  5244  GCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNDLGTQIL  5303

Query  901   DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             D YSV+L+  +  ++ E  FY+ MY    V+Q
Sbjct  5304  DSYSVILSTCDGLKFTEESFYKNMYLKSAVMQ  5335


>sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavirus 
HKU1 (isolate N1) OX=443239 GN=rep PE=3 SV=1
Length=7182

 Score = 1451 bits (3755),  Expect = 0.0, Method: Composition-based stats.
 Identities = 623/932 (67%), Positives = 736/932 (79%), Gaps = 5/932 (1%)

Query  2     ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD  60
             +   +FLNRV G S  ARL PC +G STDV  RAFDI N   AG   + K NCCRFQ  D
Sbjct  4458  SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRID  4517

Query  61    EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT  120
             +D N +D +FVVKR     Y  E+T Y L K C  VA+HDFF F IDG  VPHI R+ L+
Sbjct  4518  DDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRRNLS  4577

Query  121   KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE  180
             KYTM DL YALRHFD  +C  L EIL  Y  C + YF+KKDWYDFVENPDI+ +Y  LG 
Sbjct  4578  KYTMLDLCYALRHFDRNDCSILCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGP  4637

Query  181   RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL  240
                +ALL TV F D +   G+VGVLTLDNQDL G WYDFGDFIQT PG GV V DSYYS 
Sbjct  4638  IFNRALLNTVIFADTLVEVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSY  4697

Query  241   LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN  300
             +MP+LT+   L  E  V+      Y ++DL++YDFT+ +L+LF++YFKYW   YHPN V+
Sbjct  4698  MMPMLTMCHVLDCELFVN----DSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVD  4753

Query  301   CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN  360
             C +DRCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+
Sbjct  4754  CDNDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVD  4813

Query  361   LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY  420
              H  RLS K+LL+YAADPAMH AS + LLD RT CFSVAA+T+ + FQTVKPGNFN+DFY
Sbjct  4814  THRYRLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFY  4873

Query  421   DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF  480
             +F  SKG FKEGS+V+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF
Sbjct  4874  EFVKSKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYF  4933

Query  481   DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT  540
             + YDGGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+Q+ ++AYTKRNV+PT+T
Sbjct  4934  EIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLT  4993

Query  541   QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN  600
             QMNLKYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG  VVIGT+KFYGGW +
Sbjct  4994  QMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDD  5053

Query  601   MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA  660
             ML+ +  DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH  CCS   RFYRLANECA
Sbjct  5054  MLRHLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECA  5113

Query  661   QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV  720
             QVLSE+VMCGG  YVKPGGTSSGDATTA+ANSVFNICQAVTANV +L++ +G+KI D  +
Sbjct  5114  QVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSI  5173

Query  721   RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK  780
             RNLQ RLY  +YR   VD  FVNE+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I 
Sbjct  5174  RNLQKRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANIS  5233

Query  781   NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA  840
              F+ VLYYQNNVFMSE+KCW E D+T GPHEFCSQHTMLVK   DYVYLPYPDPSRILGA
Sbjct  5234  VFQQVLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGA  5293

Query  841   GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML  900
             GCFVDD++KTD  L+IERFVSLAIDAYPL  H N+EY  VF +YL+YI+KL+++L   +L
Sbjct  5294  GCFVDDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGTQIL  5353

Query  901   DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             D YSV+L+  +  ++ E  FY+ MY    V+Q
Sbjct  5354  DSYSVILSTCDGLKFTEESFYKNMYLKSAVMQ  5385


>sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavirus 
HKU1 (isolate N2) OX=443240 GN=rep PE=3 SV=1
Length=7152

 Score = 1449 bits (3750),  Expect = 0.0, Method: Composition-based stats.
 Identities = 622/932 (67%), Positives = 736/932 (79%), Gaps = 5/932 (1%)

Query  2     ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD  60
             +   +FLNRV G S  ARL PC +G STDV  RAFDI N   AG   + K NCCRFQ  D
Sbjct  4428  SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRID  4487

Query  61    EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT  120
             +D N +D +FVVKR     Y  E+T Y L K C  VA+HDFF F IDG  VPHI R+ L+
Sbjct  4488  DDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKNLS  4547

Query  121   KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE  180
             KYTM DL YALRHFD  +C  L EIL  Y  C + YF+KKDWYDFVENPDI+ +Y  LG 
Sbjct  4548  KYTMLDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGP  4607

Query  181   RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL  240
                +ALL TV F D +   G+VGVLTLDNQDL G WYDFGDFIQT PG GV V DSYYS 
Sbjct  4608  IFNRALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSY  4667

Query  241   LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN  300
             +MP+LT+   L  E  V+      Y ++DL++YDFT+ +L+LF++YFKYW   YHPN V+
Sbjct  4668  MMPMLTMCHVLDCELFVN----DSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVD  4723

Query  301   CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN  360
             C +DRCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+
Sbjct  4724  CDNDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVD  4783

Query  361   LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY  420
              H  RLS K+LL+YAADPAMH AS + LLD RT CFSVAA+T+ + FQTVKPGNFN+DFY
Sbjct  4784  THRYRLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFY  4843

Query  421   DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF  480
             +F  SKG FKEGS+V+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF
Sbjct  4844  EFVKSKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYF  4903

Query  481   DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT  540
             + YDGGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+Q+ ++AYTKRNV+PT+T
Sbjct  4904  EIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLT  4963

Query  541   QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN  600
             QMNLKYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG  VVIGT+KFYGGW +
Sbjct  4964  QMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDD  5023

Query  601   MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA  660
             ML+ +  DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH  CCS   RFYRLANECA
Sbjct  5024  MLRHLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECA  5083

Query  661   QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV  720
             QVLSE+VMCGG  YVKPGGTSSGDATTA+ANSVFNICQAVTANV +L++ +G+KI D  +
Sbjct  5084  QVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSI  5143

Query  721   RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK  780
             RNLQ RLY  +YR   VD  FVNE+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I 
Sbjct  5144  RNLQKRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANIS  5203

Query  781   NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA  840
              F+ VLYYQNNVFMSE+KCW E D+T GPHEFCSQHTMLVK   DYVYLPYPDPSRILGA
Sbjct  5204  VFQQVLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGA  5263

Query  841   GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML  900
             GCFVDD++KTD  L+IERFVSLAIDAYPL  H N+EY  VF +YL+YI+KL+++L   +L
Sbjct  5264  GCFVDDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGNQIL  5323

Query  901   DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             D YSV+L+  +  ++ +  FY+ MY    V+Q
Sbjct  5324  DSYSVILSTCDGLKFTDESFYKNMYLKSAVMQ  5355


>sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavirus 
229E OX=11137 GN=rep PE=1 SV=1
Length=6758

 Score = 1436 bits (3717),  Expect = 0.0, Method: Composition-based stats.
 Identities = 546/930 (59%), Positives = 696/930 (75%), Gaps = 6/930 (1%)

Query  4     AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDD  63
               S+LNRV G SAARL PC  GT  D   RAFD+YN   +   K LK+NC RF+  D+D 
Sbjct  4071  DNSYLNRVRGSSAARLEPC-NGTDIDYCVRAFDVYNKDASFIGKNLKSNCVRFKNVDKD-  4128

Query  64    NLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYT  123
                D++++VKR   S   HE+++YNLLK C AVAKHDFF +     +  ++SRQ LTKYT
Sbjct  4129  ---DAFYIVKRCIKSVMDHEQSMYNLLKGCNAVAKHDFFTWHEGRTIYGNVSRQDLTKYT  4185

Query  124   MADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVR  183
             M DL +ALR+FDE +C+  KEILV   CC  DYF  K+W+D +EN DI RVYA LG+ V 
Sbjct  4186  MMDLCFALRNFDEKDCEVFKEILVLTGCCSTDYFEMKNWFDPIENEDIHRVYAALGKVVA  4245

Query  184   QALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMP  243
              A+LK V FCD M   G+VGVLTLDNQDLNGN+YDFGDF+   PG G+P   SYYS +MP
Sbjct  4246  NAMLKCVAFCDEMVLKGVVGVLTLDNQDLNGNFYDFGDFVLCPPGMGIPYCTSYYSYMMP  4305

Query  244   ILTLTRALTAESHVDTD-LTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCL  302
             ++ +T  L +E  + +D   + +  +DLLKYDFTE +  LF++YFKYW Q YHP+CV+C 
Sbjct  4306  VMGMTNCLASECFMKSDIFGQDFKTFDLLKYDFTEHKEVLFNKYFKYWGQDYHPDCVDCH  4365

Query  303   DDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLH  362
             D+ CILHC+NFN LF+T  P T+FGPL RK+F+DGVP V + GYHF++LG+V N+DVN H
Sbjct  4366  DEMCILHCSNFNTLFATTIPNTAFGPLCRKVFIDGVPVVATAGYHFKQLGLVWNKDVNTH  4425

Query  363   SSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDF  422
             S+RL+  ELL +  DP +  AS   L+DKRT CFSVAAL+  +  QTVKPG+FNK+FYDF
Sbjct  4426  STRLTITELLQFVTDPTLIVASSPALVDKRTVCFSVAALSTGLTSQTVKPGHFNKEFYDF  4485

Query  423   AVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDC  482
               S+GFF EGS + LKHFFF Q G+AAI D+DYYRYN PTM DI Q     +V  +YFDC
Sbjct  4486  LRSQGFFDEGSELTLKHFFFTQKGDAAIKDFDYYRYNRPTMLDIGQARVAYQVAARYFDC  4545

Query  483   YDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQM  542
             Y+GGCI + +V+V NL+KSAG+P NK+GKA LYY+S+SYE+QDA+F+ TKRN++PT+TQ+
Sbjct  4546  YEGGCITSREVVVTNLNKSAGWPLNKFGKAGLYYESISYEEQDAIFSLTKRNILPTMTQL  4605

Query  543   NLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML  602
             NLKYAIS K RARTV GVS+ +TMT RQFHQK LKSI ATR ATVVIGT+KFYGGW NML
Sbjct  4606  NLKYAISGKERARTVGGVSLLATMTTRQFHQKCLKSIVATRNATVVIGTTKFYGGWDNML  4665

Query  603   KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQV  662
             K + +DV++P LMGWDYPKCDRAMP+M+R++++++L  KH TCC+ S +FYRL+NE AQV
Sbjct  4666  KNLMADVDDPKLMGWDYPKCDRAMPSMIRMLSAMILGSKHVTCCTASDKFYRLSNELAQV  4725

Query  663   LSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRN  722
             L+E+V   G  Y KPGGT+SGDATTAYANSVFNI QAV++N+N +LS + +   +  V+ 
Sbjct  4726  LTEVVYSNGGFYFKPGGTTSGDATTAYANSVFNIFQAVSSNINCVLSVNSSNCNNFNVKK  4785

Query  723   LQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNF  782
             LQ +LY+  YRN +VD  FV++FY YL+KHFSMMILSDD+VVC+N TYA  G +A I  F
Sbjct  4786  LQRQLYDNCYRNSNVDESFVDDFYGYLQKHFSMMILSDDSVVCYNKTYAGLGYIADISAF  4845

Query  783   KSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGC  842
             K+ LYYQN VFMS AKCWTE DL+ GPHEFCSQHTM +   +   YLPYPDPSRI+ AG 
Sbjct  4846  KATLYYQNGVFMSTAKCWTEEDLSIGPHEFCSQHTMQIVDENGKYYLPYPDPSRIISAGV  4905

Query  843   FVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDM  902
             FVDDI KTD  +++ER+VSLAIDAYPL+KHP  EY  VF+  L +++ L+  L   +L+ 
Sbjct  4906  FVDDITKTDAVILLERYVSLAIDAYPLSKHPKPEYRKVFYALLDWVKHLNKTLNEGVLES  4965

Query  903   YSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             +SV L +++ S++W+  FY +MY   TVLQ
Sbjct  4966  FSVTLLDEHESKFWDESFYASMYEKSTVLQ  4995


>sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavirus 
NL63 OX=277944 GN=rep PE=1 SV=1
Length=6729

 Score = 1416 bits (3665),  Expect = 0.0, Method: Composition-based stats.
 Identities = 546/930 (59%), Positives = 690/930 (74%), Gaps = 6/930 (1%)

Query  4     AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDD  63
               S+LNR  G SAARL PC  GT  D   RAFDIYN  V+   K LK NC RF+  D   
Sbjct  4046  DISYLNRARGSSAARLEPC-NGTDIDKCVRAFDIYNKNVSFLGKCLKMNCVRFKNAD---  4101

Query  64    NLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYT  123
              L D YFV+KR T S  +HE+++YNLL    A+A+HDFF ++    +  ++SR  LTKYT
Sbjct  4102  -LKDGYFVIKRCTKSVMEHEQSMYNLLNFSGALAEHDFFTWKDGRVIYGNVSRHNLTKYT  4160

Query  124   MADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVR  183
             M DLVYA+R+FDE NCD LKE+LV   CCD+ YF+ K WYD VEN DI RVYA+LG+ V 
Sbjct  4161  MMDLVYAMRNFDEQNCDVLKEVLVLTGCCDNSYFDSKGWYDPVENEDIHRVYASLGKIVA  4220

Query  184   QALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMP  243
             +A+LK V  CDAM   G+VGVLTLDNQDLNGN+YDFGDF+ + P  GVP   SYYS +MP
Sbjct  4221  RAMLKCVALCDAMVAKGVVGVLTLDNQDLNGNFYDFGDFVVSLPNMGVPCCTSYYSYMMP  4280

Query  244   ILTLTRALTAESHVDTD-LTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCL  302
             I+ LT  L +E  V +D     +  +DLLKYDFTE +  LF++YFK+W   YHPNC +C 
Sbjct  4281  IMGLTNCLASECFVKSDIFGSDFKTFDLLKYDFTEHKENLFNKYFKHWSFDYHPNCSDCY  4340

Query  303   DDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLH  362
             DD C++HCANFN LF+T  P T+FGPL RK+F+DGVP V + GYHF++LG+V N+DVN H
Sbjct  4341  DDMCVIHCANFNTLFATTIPGTAFGPLCRKVFIDGVPLVTTAGYHFKQLGLVWNKDVNTH  4400

Query  363   SSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDF  422
             S RL+  ELL +  DP++  AS   L+D+RT CFSVAAL+  +  Q VKPG+FN++FY+F
Sbjct  4401  SVRLTITELLQFVTDPSLIIASSPALVDQRTICFSVAALSTGLTNQVVKPGHFNEEFYNF  4460

Query  423   AVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDC  482
                +GFF EGS + LKHFFFAQ+G+AA+ D+D+YRYN PT+ DI Q     ++V +YFD 
Sbjct  4461  LRLRGFFDEGSELTLKHFFFAQNGDAAVKDFDFYRYNKPTILDICQARVTYKIVSRYFDI  4520

Query  483   YDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQM  542
             Y+GGCI A +V+V NL+KSAG+P NK+GKA LYY+S+SYE+QDALFA TKRNV+PT+TQ+
Sbjct  4521  YEGGCIKACEVVVTNLNKSAGWPLNKFGKASLYYESISYEEQDALFALTKRNVLPTMTQL  4580

Query  543   NLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML  602
             NLKYAIS K RARTV GVS+ STMT RQ+HQK LKSI  TR ATVVIGT+KFYGGW+NML
Sbjct  4581  NLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRNATVVIGTTKFYGGWNNML  4640

Query  603   KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQV  662
             +T+   VENP LMGWDYPKCDRA+PNM+R+++++VL  KH  CC+ + RFYRL NE AQV
Sbjct  4641  RTLIDGVENPMLMGWDYPKCDRALPNMIRMISAMVLGSKHVNCCTATDRFYRLGNELAQV  4700

Query  663   LSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRN  722
             L+E+V   G  Y KPGGT+SGDA+TAYANS+FNI QAV++N+N LLS   +   +  VR+
Sbjct  4701  LTEVVYSNGGFYFKPGGTTSGDASTAYANSIFNIFQAVSSNINRLLSVPSDSCNNVNVRD  4760

Query  723   LQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNF  782
             LQ RLY+  YR   V+  F++++Y YLRKHFSMMILSDD VVC+N  YA  G +A I  F
Sbjct  4761  LQRRLYDNCYRLTSVEESFIDDYYGYLRKHFSMMILSDDGVVCYNKDYAELGYIADISAF  4820

Query  783   KSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGC  842
             K+ LYYQNNVFMS +KCW E DLTKGPHEFCSQHTM +   D   YLPYPDPSRIL AG 
Sbjct  4821  KATLYYQNNVFMSTSKCWVEEDLTKGPHEFCSQHTMQIVDKDGTYYLPYPDPSRILSAGV  4880

Query  843   FVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDM  902
             FVDD+VKTD  +++ER+VSLAIDAYPL+KHPN EY  VF++ L +++ L+  L   +L+ 
Sbjct  4881  FVDDVVKTDAVVLLERYVSLAIDAYPLSKHPNSEYRKVFYVLLDWVKHLNKNLNEGVLES  4940

Query  903   YSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             +SV L ++   ++W  +FY +MY   T+LQ
Sbjct  4941  FSVTLLDNQEDKFWCEDFYASMYENSTILQ  4970


>sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmissible 
gastroenteritis coronavirus (strain Purdue) OX=11151 
GN=rep PE=1 SV=1
Length=6684

 Score = 1402 bits (3629),  Expect = 0.0, Method: Composition-based stats.
 Identities = 552/930 (59%), Positives = 689/930 (74%), Gaps = 6/930 (1%)

Query  4     AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDD  63
              QS+LNRV G SAARL PC  GT  D V RAFDIYN  VA   KFLKTNC RF+  D+  
Sbjct  4003  DQSYLNRVRGSSAARLEPC-NGTDPDHVSRAFDIYNKDVACIGKFLKTNCSRFRNLDKH-  4060

Query  64    NLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYT  123
                D+Y++VKR T +   HE+  YN LKD  AVA+HDFF ++       +++R+ LTKYT
Sbjct  4061  ---DAYYIVKRCTKTVMDHEQVCYNDLKDSGAVAEHDFFTYKEGRCEFGNVARRNLTKYT  4117

Query  124   MADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVR  183
             M DL YA+R+FDE NC+ LKEILVT   C +++F  KDW+D VEN  I  VYA LG  V 
Sbjct  4118  MMDLCYAIRNFDEKNCEVLKEILVTVGACTEEFFENKDWFDPVENEAIHEVYAKLGPIVA  4177

Query  184   QALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMP  243
              A+LK V FCDA+   G +GV+TLDNQDLNGN+YDFGDF++T PG G   V SYYS +MP
Sbjct  4178  NAMLKCVAFCDAIVEKGYIGVITLDNQDLNGNFYDFGDFVKTAPGFGCACVTSYYSYMMP  4237

Query  244   ILTLTRALTAESHVDTDL-TKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCL  302
             ++ +T  L +E+ V +D+    Y ++DLL YDFTE +  LF +YFKYWD+TYHPNC +C 
Sbjct  4238  LMGMTSCLESENFVKSDIYGSDYKQYDLLAYDFTEHKEYLFQKYFKYWDRTYHPNCSDCT  4297

Query  303   DDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLH  362
              D CI+HCANFN LFS   P T+FGPLVRK+ +DGVP VV+ GYHF++LG+V N DV L 
Sbjct  4298  SDECIIHCANFNTLFSMTIPMTAFGPLVRKVHIDGVPVVVTAGYHFKQLGIVWNLDVKLD  4357

Query  363   SSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDF  422
             + +LS  +LL +  DP +  AS   LLD+RT CFS+AAL+  + +QTVKPG+FNKDFYDF
Sbjct  4358  TMKLSMTDLLRFVTDPTLLVASSPALLDQRTVCFSIAALSTGITYQTVKPGHFNKDFYDF  4417

Query  423   AVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDC  482
                +GFF+EGS + LKHFFFAQ G AA++D++YYRYN  T+ DI Q  FV ++V KYF+C
Sbjct  4418  ITERGFFEEGSELTLKHFFFAQGGEAAMTDFNYYRYNRVTVLDICQAQFVYKIVGKYFEC  4477

Query  483   YDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQM  542
             YDGGCINA +V+V N DKSAG+P NK+GKARLYY+++SYE+QDALFA TKRNV+PT+TQM
Sbjct  4478  YDGGCINAREVVVTNYDKSAGYPLNKFGKARLYYETLSYEEQDALFALTKRNVLPTMTQM  4537

Query  543   NLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML  602
             NLKYAIS K RARTV GVS+ STMT RQ+HQK LKSIAATR ATVVIG++KFYGGW NML
Sbjct  4538  NLKYAISGKARARTVGGVSLLSTMTTRQYHQKHLKSIAATRNATVVIGSTKFYGGWDNML  4597

Query  603   KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQV  662
             K +  DV+N  LMGWDYPKCDRA+PNM+R+ ++++L  KH  CC+ + RFYRL+NE AQV
Sbjct  4598  KNLMRDVDNGCLMGWDYPKCDRALPNMIRMASAMILGSKHVGCCTHNDRFYRLSNELAQV  4657

Query  663   LSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRN  722
             L+E+V C G  Y KPGGT+SGD TTAYANS FNI QAV+ANVN LL  D N   +  V++
Sbjct  4658  LTEVVHCTGGFYFKPGGTTSGDGTTAYANSAFNIFQAVSANVNKLLGVDSNACNNVTVKS  4717

Query  723   LQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNF  782
             +Q ++Y+  YR+  +D +FV E+++YLRKHFSMMILSDD VVC+N  YA  G VA I  F
Sbjct  4718  IQRKIYDNCYRSSSIDEEFVVEYFSYLRKHFSMMILSDDGVVCYNKDYADLGYVADINAF  4777

Query  783   KSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGC  842
             K+ LYYQNNVFMS +KCW E DL+ GPHEFCSQHT+ +   D   YLPYPDPSRIL AG 
Sbjct  4778  KATLYYQNNVFMSTSKCWVEPDLSVGPHEFCSQHTLQIVGPDGDYYLPYPDPSRILSAGV  4837

Query  843   FVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDM  902
             FVDDIVKTD  +M+ER+VSLAIDAYPLTKHP   Y  VF+  L +++ L   L   +LD 
Sbjct  4838  FVDDIVKTDNVIMLERYVSLAIDAYPLTKHPKPAYQKVFYTLLDWVKHLQKNLNAGVLDS  4897

Query  903   YSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             +SV +  +   ++W  EFY ++Y   TVLQ
Sbjct  4898  FSVTMLEEGQDKFWSEEFYASLYEKSTVLQ  4927


>sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavirus 
(strain FIPV WSU-79/1146) OX=33734 GN=rep PE=1 SV=2
Length=6709

 Score = 1374 bits (3556),  Expect = 0.0, Method: Composition-based stats.
 Identities = 547/930 (59%), Positives = 684/930 (74%), Gaps = 6/930 (1%)

Query  4     AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDD  63
              QS+LN    +    L PC  GT  D V RAFDIYN  VA   KFLKTNC RF+  D+  
Sbjct  4028  DQSYLNECGVLVQLDLEPC-NGTDPDHVSRAFDIYNKDVACIGKFLKTNCSRFRNLDKH-  4085

Query  64    NLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYT  123
                D+Y+VVKR T S   HE+  YN LKD   VA+HDFF ++       +++R+ LTKYT
Sbjct  4086  ---DAYYVVKRCTKSVMDHEQVCYNDLKDSGVVAEHDFFLYKEGRCEFGNVARKDLTKYT  4142

Query  124   MADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVR  183
             M DL YA+R+FDE NC+ LKEILVT   C++ +F  KDW+D VEN  I  VYA LG  V 
Sbjct  4143  MMDLCYAIRNFDEKNCEVLKEILVTLGACNESFFENKDWFDPVENEAIHEVYARLGPIVA  4202

Query  184   QALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMP  243
              A+LK V FCDA+   G +G++TLDNQDLNGN+YDFGDF++TTPG G   V SYYS +MP
Sbjct  4203  NAMLKCVAFCDAIVEKGYIGIITLDNQDLNGNFYDFGDFVKTTPGFGCACVTSYYSYMMP  4262

Query  244   ILTLTRALTAESHVDTDL-TKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCL  302
             ++ +T  L +E+ V +D+    Y ++DLL YDFT+ + KLF +YFK+WD+TYHPNC +C 
Sbjct  4263  LMGMTSCLESENFVKSDIYGADYKQYDLLAYDFTDHKEKLFHKYFKHWDRTYHPNCSDCT  4322

Query  303   DDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLH  362
              D CI+HCANFN LFS   P T+FGPLVRK+ +DGVP VV+ GYHF++LG+V N DV L 
Sbjct  4323  SDECIIHCANFNTLFSMTIPSTAFGPLVRKVHIDGVPVVVTAGYHFKQLGIVWNLDVKLD  4382

Query  363   SSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDF  422
             + +LS  +LL +  DP +  AS   LLD+RT CFS+AAL+  V +QTVKPG+FNKDFYDF
Sbjct  4383  TMKLSMTDLLRFVTDPTLLVASSPALLDQRTVCFSIAALSTGVTYQTVKPGHFNKDFYDF  4442

Query  423   AVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDC  482
                +GFF+EGS + LKHFFFAQ G AA++D++YYRYN  T+ DI Q  FV ++V KYF+C
Sbjct  4443  ITERGFFEEGSELTLKHFFFAQGGEAAMTDFNYYRYNRVTVLDICQAQFVYKIVGKYFEC  4502

Query  483   YDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQM  542
             YDGGCINA +V+V N DKSAG+P NK+GKARLYY+++SYE+QDALFA TKRNV+PT+TQM
Sbjct  4503  YDGGCINAREVVVTNYDKSAGYPLNKFGKARLYYETLSYEEQDALFALTKRNVLPTMTQM  4562

Query  543   NLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML  602
             NLKYAIS K RARTV GVS+ STMT RQ+HQK LKSIAATR ATVVIG++KFYGGW NML
Sbjct  4563  NLKYAISGKARARTVGGVSLLSTMTTRQYHQKHLKSIAATRNATVVIGSTKFYGGWDNML  4622

Query  603   KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQV  662
             K +  DV+N  LMGWDYPKCDRA+PNM+R+ ++++L  KH  CC+ S RFYRL+NE AQV
Sbjct  4623  KNLMRDVDNGCLMGWDYPKCDRALPNMIRMASAMILGSKHVGCCTHSDRFYRLSNELAQV  4682

Query  663   LSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRN  722
             L+E+V C G  Y KPGGT+SGD TTAYANS FNI QAV+ANVN LL  D N   +  V++
Sbjct  4683  LTEVVHCTGGFYFKPGGTTSGDGTTAYANSAFNIFQAVSANVNKLLGVDSNACNNVTVKS  4742

Query  723   LQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNF  782
             +Q ++Y+  YR+  +D +FV E+++YLRKHFSMMILSDD VVC+N  YA  G VA I  F
Sbjct  4743  IQRKIYDNCYRSSSIDEEFVVEYFSYLRKHFSMMILSDDGVVCYNKDYADLGYVADINAF  4802

Query  783   KSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGC  842
             K+ LYYQNNVFMS +KCW E DL+ GPHEFCSQHT+ +   D   YLPYPDPSRIL AG 
Sbjct  4803  KATLYYQNNVFMSTSKCWVEPDLSVGPHEFCSQHTLQIVGPDGDYYLPYPDPSRILSAGV  4862

Query  843   FVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDM  902
             FVDDIVKTD  +M+ER+VSLAIDAYPLTKHP   Y  VF+  L +++ L   L   +LD 
Sbjct  4863  FVDDIVKTDNVIMLERYVSLAIDAYPLTKHPKPAYQKVFYTLLDWVKHLQKNLNAGVLDS  4922

Query  903   YSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             +SV +  +   ++W  EFY ++Y   TVLQ
Sbjct  4923  FSVTMLEEGQDKFWSEEFYASLYEKSTVLQ  4952


>sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectious 
bronchitis virus (strain Beaudette CK) OX=160235 GN=rep 
PE=3 SV=1
Length=6629

 Score = 1372 bits (3552),  Expect = 0.0, Method: Composition-based stats.
 Identities = 579/937 (62%), Positives = 705/937 (75%), Gaps = 13/937 (1%)

Query  4     AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQE----K  59
              +++LNRV G S ARL P  +G   DVV RAFD+ N + AG  + LK NC RFQE    +
Sbjct  3937  DKNYLNRVRGSSEARLIPLASGCDPDVVKRAFDVCNKESAGMFQNLKRNCARFQELRDTE  3996

Query  60    DEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRL  119
             D +   +DSYFVVK+ T SNY+HE++ Y  LK     A HDFF F  +   + +ISRQRL
Sbjct  3997  DGNLEYLDSYFVVKQTTPSNYEHEKSCYEDLKS-EVTADHDFFVFNKN---IYNISRQRL  4052

Query  120   TKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDD---DYFN-KKDWYDFVENPDILRVY  175
             TKYTM D  YALRHFD  +C+ LKEILVTY C +D    +F   KDWYD +EN     + 
Sbjct  4053  TKYTMMDFCYALRHFDPKDCEVLKEILVTYGCIEDYHPKWFEENKDWYDPIENSKYYVML  4112

Query  176   ANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVD  235
             A +G  VR+ALL  ++F + M   G VGV+TLDNQDLNG +YDFGDF +T PG+GVPV D
Sbjct  4113  AKMGPIVRRALLNAIEFGNLMVEKGYVGVITLDNQDLNGKFYDFGDFQKTAPGAGVPVFD  4172

Query  236   SYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYH  295
             +YYS +MPI+ +T AL  E + + D+ K Y  +DLLKYD+TEE+ +LF +YFKYWDQ YH
Sbjct  4173  TYYSYMMPIIAMTDALAPERYFEYDVHKGYKSYDLLKYDYTEEKQELFQKYFKYWDQEYH  4232

Query  296   PNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVH  355
             PNC +C DDRC++HCANFN+LFST+ P TSFG L RK+FVDGVPF+ + GYH +ELGV+ 
Sbjct  4233  PNCRDCSDDRCLIHCANFNILFSTLIPQTSFGNLCRKVFVDGVPFIATCGYHSKELGVIM  4292

Query  356   NQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNF  415
             NQD  +  S++   +L+ +  DPA+   + N L+D RT+CFSV ALT+ +  QTVKPG+F
Sbjct  4293  NQDNTMSFSKMGLSQLMQFVGDPALLVGTSNNLVDLRTSCFSVCALTSGITHQTVKPGHF  4352

Query  416   NKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEV  475
             NKDFYDFA   G FKEGSS+ LKHFF+ Q GNAAI+DYDYYRYN PTM DI QLLF +EV
Sbjct  4353  NKDFYDFAEKAGMFKEGSSIPLKHFFYPQTGNAAINDYDYYRYNRPTMFDICQLLFCLEV  4412

Query  476   VDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNV  535
               KYF+CY+GGCI A+QV+VNNLDKSAG+PFNK+GKARLYY+ MS E+QD LF  TK+NV
Sbjct  4413  TSKYFECYEGGCIPASQVVVNNLDKSAGYPFNKFGKARLYYE-MSLEEQDQLFEITKKNV  4471

Query  536   IPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFY  595
             +PTITQMNLKYAISAKNRARTVAGVSI STMTNRQFHQK+LKSI  TR A+VVIGT+KFY
Sbjct  4472  LPTITQMNLKYAISAKNRARTVAGVSILSTMTNRQFHQKILKSIVNTRNASVVIGTTKFY  4531

Query  596   GGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRL  655
             GGW NML+ +   VE+P LMGWDYPKCDRAMPN+LRI ASLVLARKHT CCS S R YRL
Sbjct  4532  GGWDNMLRNLIQGVEDPILMGWDYPKCDRAMPNLLRIAASLVLARKHTNCCSWSERIYRL  4591

Query  656   ANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKI  715
              NECAQVLSE V+  G +YVKPGGTSSGDATTAYANSVFNI QA +ANV  LLS     I
Sbjct  4592  YNECAQVLSETVLATGGIYVKPGGTSSGDATTAYANSVFNIIQATSANVARLLSVITRDI  4651

Query  716   ADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGL  775
                 +++LQ+ LY+ +YR  + D  FV +FY+YL K+FS+MILSDD VVC+N+T A QGL
Sbjct  4652  VYDNIKSLQYELYQQVYRRVNFDPAFVEKFYSYLCKNFSLMILSDDGVVCYNNTLAKQGL  4711

Query  776   VASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPS  835
             VA I  F+ VLYYQNNVFM+++KCW E DL KGPHEFCSQHTMLV+   +  YLPYPDPS
Sbjct  4712  VADISGFREVLYYQNNVFMADSKCWVEPDLEKGPHEFCSQHTMLVEVDGEPKYLPYPDPS  4771

Query  836   RILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDEL  895
             RILGA  FVDD+ KT+   ++ER+++LAIDAYPL  H N+EY  VF + L YIRKL+ EL
Sbjct  4772  RILGACVFVDDVDKTEPVAVMERYIALAIDAYPLVHHENEEYKKVFFVLLAYIRKLYQEL  4831

Query  896   TGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             + +ML  YS ++  D  S++WE EFYE MY   T LQ
Sbjct  4832  SQNMLMDYSFVMDIDKGSKFWEQEFYENMYRAPTTLQ  4868


>sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious 
bronchitis virus (strain Beaudette) OX=11122 GN=rep PE=1 
SV=1
Length=6629

 Score = 1372 bits (3552),  Expect = 0.0, Method: Composition-based stats.
 Identities = 579/937 (62%), Positives = 705/937 (75%), Gaps = 13/937 (1%)

Query  4     AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQE----K  59
              +++LNRV G S ARL P  +G   DVV RAFD+ N + AG  + LK NC RFQE    +
Sbjct  3937  DKNYLNRVRGSSEARLIPLASGCDPDVVKRAFDVCNKESAGMFQNLKRNCARFQELRDTE  3996

Query  60    DEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRL  119
             D +   +DSYFVVK+ T SNY+HE++ Y  LK     A HDFF F  +   + +ISRQRL
Sbjct  3997  DGNLEYLDSYFVVKQTTPSNYEHEKSCYEDLKS-EVTADHDFFVFNKN---IYNISRQRL  4052

Query  120   TKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDD---DYFN-KKDWYDFVENPDILRVY  175
             TKYTM D  YALRHFD  +C+ LKEILVTY C +D    +F   KDWYD +EN     + 
Sbjct  4053  TKYTMMDFCYALRHFDPKDCEVLKEILVTYGCIEDYHPKWFEENKDWYDPIENSKYYVML  4112

Query  176   ANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVD  235
             A +G  VR+ALL  ++F + M   G VGV+TLDNQDLNG +YDFGDF +T PG+GVPV D
Sbjct  4113  AKMGPIVRRALLNAIEFGNLMVEKGYVGVITLDNQDLNGKFYDFGDFQKTAPGAGVPVFD  4172

Query  236   SYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYH  295
             +YYS +MPI+ +T AL  E + + D+ K Y  +DLLKYD+TEE+ +LF +YFKYWDQ YH
Sbjct  4173  TYYSYMMPIIAMTDALAPERYFEYDVHKGYKSYDLLKYDYTEEKQELFQKYFKYWDQEYH  4232

Query  296   PNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVH  355
             PNC +C DDRC++HCANFN+LFST+ P TSFG L RK+FVDGVPF+ + GYH +ELGV+ 
Sbjct  4233  PNCRDCSDDRCLIHCANFNILFSTLIPQTSFGNLCRKVFVDGVPFIATCGYHSKELGVIM  4292

Query  356   NQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNF  415
             NQD  +  S++   +L+ +  DPA+   + N L+D RT+CFSV ALT+ +  QTVKPG+F
Sbjct  4293  NQDNTMSFSKMGLSQLMQFVGDPALLVGTSNNLVDLRTSCFSVCALTSGITHQTVKPGHF  4352

Query  416   NKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEV  475
             NKDFYDFA   G FKEGSS+ LKHFF+ Q GNAAI+DYDYYRYN PTM DI QLLF +EV
Sbjct  4353  NKDFYDFAEKAGMFKEGSSIPLKHFFYPQTGNAAINDYDYYRYNRPTMFDICQLLFCLEV  4412

Query  476   VDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNV  535
               KYF+CY+GGCI A+QV+VNNLDKSAG+PFNK+GKARLYY+ MS E+QD LF  TK+NV
Sbjct  4413  TSKYFECYEGGCIPASQVVVNNLDKSAGYPFNKFGKARLYYE-MSLEEQDQLFEITKKNV  4471

Query  536   IPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFY  595
             +PTITQMNLKYAISAKNRARTVAGVSI STMTNRQFHQK+LKSI  TR A+VVIGT+KFY
Sbjct  4472  LPTITQMNLKYAISAKNRARTVAGVSILSTMTNRQFHQKILKSIVNTRNASVVIGTTKFY  4531

Query  596   GGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRL  655
             GGW NML+ +   VE+P LMGWDYPKCDRAMPN+LRI ASLVLARKHT CCS S R YRL
Sbjct  4532  GGWDNMLRNLIQGVEDPILMGWDYPKCDRAMPNLLRIAASLVLARKHTNCCSWSERIYRL  4591

Query  656   ANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKI  715
              NECAQVLSE V+  G +YVKPGGTSSGDATTAYANSVFNI QA +ANV  LLS     I
Sbjct  4592  YNECAQVLSETVLATGGIYVKPGGTSSGDATTAYANSVFNIIQATSANVARLLSVITRDI  4651

Query  716   ADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGL  775
                 +++LQ+ LY+ +YR  + D  FV +FY+YL K+FS+MILSDD VVC+N+T A QGL
Sbjct  4652  VYDNIKSLQYELYQQVYRRVNFDPAFVEKFYSYLCKNFSLMILSDDGVVCYNNTLAKQGL  4711

Query  776   VASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPS  835
             VA I  F+ VLYYQNNVFM+++KCW E DL KGPHEFCSQHTMLV+   +  YLPYPDPS
Sbjct  4712  VADISGFREVLYYQNNVFMADSKCWVEPDLEKGPHEFCSQHTMLVEVDGEPKYLPYPDPS  4771

Query  836   RILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDEL  895
             RILGA  FVDD+ KT+   ++ER+++LAIDAYPL  H N+EY  VF + L YIRKL+ EL
Sbjct  4772  RILGACVFVDDVDKTEPVAVMERYIALAIDAYPLVHHENEEYKKVFFVLLAYIRKLYQEL  4831

Query  896   TGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
             + +ML  YS ++  D  S++WE EFYE MY   T LQ
Sbjct  4832  SQNMLMDYSFVMDIDKGSKFWEQEFYENMYRAPTTLQ  4868


>sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious 
bronchitis virus (strain M41) OX=11127 GN=rep PE=1 SV=1
Length=6631

 Score = 1367 bits (3538),  Expect = 0.0, Method: Composition-based stats.
 Identities = 579/940 (62%), Positives = 701/940 (75%), Gaps = 13/940 (1%)

Query  1     SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQE--  58
             S   +++LNRV G S ARL P   G   DVV RAFD+ N + AG  + LK NC RFQE  
Sbjct  3936  SGFDKNYLNRVRGSSEARLIPLANGCDPDVVKRAFDVCNKESAGMFQNLKRNCARFQEVR  3995

Query  59    --KDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISR  116
               +D +    DSYFVVK+ T SNY+HE+  Y  LK     A HDFF F  +   + +ISR
Sbjct  3996  DTEDGNLEYCDSYFVVKQTTPSNYEHEKACYEDLKS-EVTADHDFFVFNKN---IYNISR  4051

Query  117   QRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDD---DYFN-KKDWYDFVENPDIL  172
             QRLTKYTM D  YALRHFD  +C+ LKEILVTY C +D    +F   KDWYD +ENP   
Sbjct  4052  QRLTKYTMMDFCYALRHFDPKDCEVLKEILVTYGCIEDYHPKWFEENKDWYDPIENPKYY  4111

Query  173   RVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVP  232
              + A +G  VR+ALL  ++F + M   G VGV+TLDNQDLNG +YDFGDF +T PG+GVP
Sbjct  4112  AMLAKMGPIVRRALLNAIEFGNLMVEKGYVGVITLDNQDLNGKFYDFGDFQKTAPGAGVP  4171

Query  233   VVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQ  292
             V D+YYS +MPI+ +T AL  E + + D+ K Y  +DLLKYD+TEE+  LF +YFKYWDQ
Sbjct  4172  VFDTYYSYMMPIIAMTDALAPERYFEYDVHKGYKSYDLLKYDYTEEKQDLFQKYFKYWDQ  4231

Query  293   TYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELG  352
              YHPNC +C DDRC++HCANFN+LFST+ P TSFG L RK+FVDGVPF+ + GYH +ELG
Sbjct  4232  EYHPNCRDCSDDRCLIHCANFNILFSTLVPQTSFGNLCRKVFVDGVPFIATCGYHSKELG  4291

Query  353   VVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKP  412
             V+ NQD  +  S++   +L+ +  DPA+   + N L+D RT+CFSV AL + +  QTVKP
Sbjct  4292  VIMNQDNTMSFSKMGLSQLMQFVGDPALLVGTSNKLVDLRTSCFSVCALASGITHQTVKP  4351

Query  413   GNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFV  472
             G+FNKDFYDFA   G FKEGSS+ LKHFF+ Q GNAAI+DYDYYRYN PTM DIRQLLF 
Sbjct  4352  GHFNKDFYDFAEKAGMFKEGSSIPLKHFFYPQTGNAAINDYDYYRYNRPTMFDIRQLLFC  4411

Query  473   VEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTK  532
             +EV  KYF+CY+GGCI A+QV+VNNLDKSAG+PFNK+GKARLYY+ MS E+QD LF  TK
Sbjct  4412  LEVTSKYFECYEGGCIPASQVVVNNLDKSAGYPFNKFGKARLYYE-MSLEEQDQLFESTK  4470

Query  533   RNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTS  592
             +NV+PTITQMNLKYAISAKNRARTVAGVSI STMTNRQFHQK+LKSI  TR A VVIGT+
Sbjct  4471  KNVLPTITQMNLKYAISAKNRARTVAGVSILSTMTNRQFHQKILKSIVNTRNAPVVIGTT  4530

Query  593   KFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRF  652
             KFYGGW NML+ +   VE+P LMGWDYPKCDRAMPN+LRI ASLVLARKHT CC+ S R 
Sbjct  4531  KFYGGWDNMLRNLIQGVEDPILMGWDYPKCDRAMPNLLRIAASLVLARKHTNCCTWSERV  4590

Query  653   YRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDG  712
             YRL NECAQVLSE V+  G +YVKPGGTSSGDATTAYANSVFNI QA +ANV  LLS   
Sbjct  4591  YRLYNECAQVLSETVLATGGIYVKPGGTSSGDATTAYANSVFNIIQATSANVARLLSVIT  4650

Query  713   NKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYAS  772
               I    +++LQ+ LY+ +YR  + D  FV +FY+YL K+FS+MILSDD VVC+N+T A 
Sbjct  4651  RDIVYDDIKSLQYELYQQVYRRVNFDPAFVEKFYSYLCKNFSLMILSDDGVVCYNNTLAK  4710

Query  773   QGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYP  832
             QGLVA I  F+ VLYYQNNVFM+++KCW E DL KGPHEFCSQHTMLV+   +  YLPYP
Sbjct  4711  QGLVADISGFREVLYYQNNVFMADSKCWVEPDLEKGPHEFCSQHTMLVEVDGEPRYLPYP  4770

Query  833   DPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLH  892
             DPSRIL A  FVDD+ KT+   ++ER+++LAIDAYPL  H N+EY  VF + L YIRKL+
Sbjct  4771  DPSRILCACVFVDDLDKTESVAVMERYIALAIDAYPLVHHENEEYKKVFFVLLSYIRKLY  4830

Query  893   DELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
              EL+ +ML  YS ++  D  S++WE EFYE MY   T LQ
Sbjct  4831  QELSQNMLMDYSFVMDIDKGSKFWEQEFYENMYRAPTTLQ  4870


>sp|Q9WQ77|R1AB_CVRSD Replicase polyprotein 1ab (Fragment) OS=Rat 
coronavirus (strain 681) OX=33740 GN=rep PE=3 SV=1
Length=307

 Score = 468 bits (1205),  Expect = 8e-158, Method: Composition-based stats.
 Identities = 225/307 (73%), Positives = 266/307 (87%), Gaps = 0/307 (0%)

Query  506  FNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICST  565
            FNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+TQMNLKYAISAKNRARTVAGVSI ST
Sbjct  1    FNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNLKYAISAKNRARTVAGVSILST  60

Query  566  MTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRA  625
            MT R FHQK LKSIAATRG  VVIGT+KFYGGW +ML+ +  DV++P LMGWDYPKCDRA
Sbjct  61   MTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRRLIKDVDSPVLMGWDYPKCDRA  120

Query  626  MPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDA  685
            MPN+LRI++SLVLARKH +CCS + RFYRLANECAQVLSE+VMCGG  YVKPGGTSSGDA
Sbjct  121  MPNILRIVSSLVLARKHDSCCSHTDRFYRLANECAQVLSEIVMCGGCYYVKPGGTSSGDA  180

Query  686  TTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEF  745
            TTA+ANSVFNICQAV+ANV +L++ +G+KI D  +R LQ RLY  +YR   VD  FV+E+
Sbjct  181  TTAFANSVFNICQAVSANVCSLMACNGHKIEDLSIRELQKRLYSNVYRADHVDPAFVSEY  240

Query  746  YAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDL  805
            Y +L KHFSMMILSDD VVC+NS +AS+G +A+I  F+ VLYYQNNVFMSEAKCW ETD+
Sbjct  241  YEFLNKHFSMMILSDDGVVCYNSEFASKGYIANISAFQQVLYYQNNVFMSEAKCWVETDI  300

Query  806  TKGPHEF  812
             KGPHEF
Sbjct  301  EKGPHEF  307


>sp|Q9WQ76|R1AB_CVTMI Replicase polyprotein 1ab (Fragment) OS=Turkey 
coronavirus (strain Minnesota) OX=231430 GN=rep PE=3 
SV=1
Length=306

 Score = 438 bits (1126),  Expect = 4e-146, Method: Composition-based stats.
 Identities = 213/307 (69%), Positives = 248/307 (81%), Gaps = 1/307 (0%)

Query  506  FNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICST  565
            FNK+GKARLYY+ MS E+QD LF  TK+NV+PTITQMNLKYAISAKNRARTVAGVSI ST
Sbjct  1    FNKFGKARLYYE-MSLEEQDQLFESTKKNVLPTITQMNLKYAISAKNRARTVAGVSILST  59

Query  566  MTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRA  625
            MTNRQFHQK+LKSI  TR A VVIGT+KFYGGW NML+ +   VE+P LMGWDYPKCDRA
Sbjct  60   MTNRQFHQKILKSIVNTRNAPVVIGTTKFYGGWDNMLRNLIQGVEDPILMGWDYPKCDRA  119

Query  626  MPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDA  685
            MPN+LRI ASLVLARKHT CC+ S R YRL NECAQVLSE V+  G +YVKPGGTSSGDA
Sbjct  120  MPNLLRITASLVLARKHTNCCTWSERIYRLYNECAQVLSETVLATGGIYVKPGGTSSGDA  179

Query  686  TTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEF  745
            TTAYANSVFNI QA +ANV  LLS     I    +++LQ+ LY+ +YR  + D  FV +F
Sbjct  180  TTAYANSVFNIIQATSANVARLLSVITRDIVYDDIKSLQYELYQQVYRRVNFDPAFVEKF  239

Query  746  YAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDL  805
            Y+YL K+FS+MI +DD VVC+N+T A QGLVA I  F+ +LYYQNNV+M+++KCW E DL
Sbjct  240  YSYLCKNFSLMIFADDGVVCYNNTLAKQGLVADISGFREILYYQNNVYMADSKCWVEPDL  299

Query  806  TKGPHEF  812
             KGPHEF
Sbjct  300  EKGPHEF  306


>sp|P0C6V7|R1AB_BEV Replicase polyprotein 1ab OS=Berne virus OX=11156 
GN=rep PE=1 SV=1
Length=6857

 Score = 458 bits (1178),  Expect = 3e-137, Method: Composition-based stats.
 Identities = 123/519 (24%), Positives = 224/519 (43%), Gaps = 55/519 (11%)

Query  418   DFYDFAVSKGFFKEGSSV--ELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEV  475
              FYD  + +     G       K+F++  +   A++D  YY Y        + L  V + 
Sbjct  4908  PFYDVGLCQELTDAGVDCGEAFKYFYYLSNPAGALADVCYYDYQGTGFYSPKLLAGVYDF  4967

Query  476   VDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWG-KARLYYDSMSYEDQDALFAYTKRN  534
             + +  +CY    IN          + +    N  G +    Y ++  E+   LF Y ++ 
Sbjct  4968  MKRVTECYR---INERFTYEQAKPRKSSMGINITGYQQDAVYRALGPENIARLFEYAQKA  5024

Query  535   VIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSI---AATRGATVVIGT  591
              +P  T++  K+A+SAK RARTV+  S  ++   R  H+ +   +   A   G   +IG 
Sbjct  5025  PLPFCTKIITKFALSAKARARTVSSCSFIASTIFRFAHKPVTSKMVEVAQNSGGFCLIGV  5084

Query  592   SKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHR  651
             SK+   +   LK  Y  +E   + G DY KCDR  P   R + + +L            +
Sbjct  5085  SKYGLKFSKFLKDKYGAIEGFDVFGSDYTKCDRTFPLSFRALTAALLYE----LGEWDEK  5140

Query  652   FYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLS--  709
              +   NE    + + ++C G L  KPGGTSSGDATTA++N+ +N           +LS  
Sbjct  5141  SWLYLNEVNSYMLDTMLCDGMLLNKPGGTSSGDATTAHSNTFYNYMVHYVVAFKTILSDL  5200

Query  710   TDGNKIADKYVRNL----QHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVC  765
             ++GNK+      N      ++++  L  ++     F+N              LSDD+ + 
Sbjct  5201  SEGNKVMRIAAHNAYTTGDYQVFNTLLEDQFQTNYFLN-------------FLSDDSFI-  5246

Query  766   FNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDD  825
             F+   A +  + + +NF + L    +  + + K W+     +   EFCS H  ++K   +
Sbjct  5247  FSKPEALK--IFTCENFSNKLQTILHTKVDQTKSWSTKGHIE---EFCSAH--IIKTDGE  5299

Query  826   YVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYL  885
             Y +L  P   R+L +   +D +   D   M  RFV++  ++   +++  + +  +F ++L
Sbjct  5300  YHFL--PSRGRLLASLLILDKLSDVDIYYM--RFVAILCESAVYSRYQPEFFNGLFQVFL  5355

Query  886   QYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAM  924
               +++   +              +    +  E EFYE +
Sbjct  5356  DKVQQFRKDY-----------CCDPCPPQLLEREFYENL  5383


 Score = 53.9 bits (128),  Expect = 9e-06, Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 73/188 (39%), Gaps = 30/188 (16%)

Query  35    FDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCP  94
              D+  +  AG  K  K+N    + + +        F++KR         E         P
Sbjct  4596  IDLATEYNAGIVKVNKSNTHSVEYQSKR-------FMIKR----VKDQSEFALAKTAFLP  4644

Query  95    AVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDD  154
             ++  H         +    + R   +++++ DLVYA+   D+   D L E    +N   D
Sbjct  4645  SIIPHHM----EKQNGEWFLIRGPTSQWSLGDLVYAIWLGDQ---DYLSECGFVFNPSRD  4697

Query  155   DYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNG  214
             ++ +  +   F+ N             +  A+L        ++   +   LTLDN DLNG
Sbjct  4698  EFLDDANQRSFLAN------------LLEPAILNFSHIYWQVKMCKVPYKLTLDNVDLNG  4745

Query  215   NWYDFGDF  222
               YDFGD+
Sbjct  4746  QLYDFGDY  4753


>sp|P0C6V8|R1AB_BRV1 Replicase polyprotein 1ab OS=Breda virus 
1 OX=360393 GN=rep PE=2 SV=1
Length=6733

 Score = 449 bits (1155),  Expect = 3e-134, Method: Composition-based stats.
 Identities = 119/525 (23%), Positives = 216/525 (41%), Gaps = 55/525 (10%)

Query  418   DFYDFAVSKGFFKEGSSV--ELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEV  475
               YD  + +     G       K+F++  +   A++D  +Y Y        + L  V + 
Sbjct  4784  PLYDVGLCQELTDAGVDCGEAFKYFYYLSNPAGALADVCFYDYQGTGFYSPKLLAGVYDF  4843

Query  476   VDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWG-KARLYYDSMSYEDQDALFAYTKRN  534
             + +   CY     +          + +    N  G +    Y ++  E+   LF Y ++ 
Sbjct  4844  MKRVTTCYK---TDERFTYEQAKPRKSSMGINITGYQQDAVYRALGPENITKLFEYAQKA  4900

Query  535   VIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSI---AATRGATVVIGT  591
              +P  T++  K+A+SAK RARTV+  S  ++   R  H+ +   +   A       +IG 
Sbjct  4901  PLPFCTKIITKFALSAKARARTVSSCSFIASTIFRFAHKPVTSKMVEVAQNSQGFCLIGV  4960

Query  592   SKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHR  651
             SK+   +   LK  Y  +E   + G DY KCDR  P   R + + +L             
Sbjct  4961  SKYGLKFSKFLKDKYGAIEQFDVFGSDYTKCDRTFPLSFRALTAALLYE----LGGWEED  5016

Query  652   FYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLS--  709
              +   NE    + + ++C G L  KPGGTSSGDATTA++N+ +N           +LS  
Sbjct  5017  SWLYLNEVNSYMLDTMLCDGMLLNKPGGTSSGDATTAHSNTFYNYMVHYVVAFKTILSDL  5076

Query  710   TDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFS----MMILSDDAVVC  765
             +D NK+    +R   H  Y                F   L + F     +  LSDD+ + 
Sbjct  5077  SDCNKV----MRIAAHNAYTT---------GDYGVFNTLLEEQFQTNYFLNFLSDDSFI-  5122

Query  766   FNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDD  825
             F+   A +  + + +NF + L    +  +   K W  T   +   EFCS H  ++K   +
Sbjct  5123  FSKPGALK--IFTCENFSNKLQTILHTKVDLTKSWATTGHIE---EFCSAH--IIKTDGE  5175

Query  826   YVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYL  885
             Y +L  P   R+L +   +D +   D   M  RFV++  ++   +++  + +  +F ++L
Sbjct  5176  YHFL--PSRGRLLASLLILDKLSDVDIYYM--RFVAILCESAVYSRYQPEFFNGLFQVFL  5231

Query  886   QYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTV  930
               +++   +              +   ++  + +FYE +      
Sbjct  5232  DKVQQFRKDY-----------CCDPCPTQLLDRQFYENLVFTSNT  5265


 Score = 51.6 bits (122),  Expect = 4e-05, Method: Composition-based stats.
 Identities = 41/188 (22%), Positives = 74/188 (39%), Gaps = 30/188 (16%)

Query  35    FDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCP  94
              D+  +  AG  K  K+N    +            F++KR      QHE  +       P
Sbjct  4472  IDLATEYNAGIVKVNKSNTHSVE-------YKGQRFMIKRVKD---QHEFAL-ARTAFLP  4520

Query  95    AVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDD  154
             ++  H      +  +    + R   T++++ DLVYA+   D+     L E    +N   D
Sbjct  4521  SIIPHHM----VHQNGEWFLVRGPTTQWSLGDLVYAIWLGDQ---AYLDECGFVFNPSRD  4573

Query  155   DYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNG  214
             ++ +  +   ++ N             +  A+L   +    ++   +   +TLDN DL G
Sbjct  4574  EFLDDANQRSYLAN------------LLEPAILSFCEIFHCVKGCQVPYKITLDNLDLKG  4621

Query  215   NWYDFGDF  222
               YDFGD+
Sbjct  4622  QLYDFGDY  4629


>sp|Q008X6|R1AB_WBV24 Replicase polyprotein 1ab OS=White bream 
virus (isolate Blicca bjoerkna L./Germany/DF24/00) OX=766180 
GN=rep PE=1 SV=1
Length=6872

 Score = 389 bits (998),  Expect = 1e-113, Method: Composition-based stats.
 Identities = 120/539 (22%), Positives = 211/539 (39%), Gaps = 67/539 (12%)

Query  415   FNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGN--AAISDYDYYRYNLPTMCDIRQLLFV  472
             + + FYD  + +     G ++     +  Q G    A+ D+ YY YN P   D   L  V
Sbjct  4888  YKRPFYDLDLIQRMNSAGLNLSETTGYHYQCGTTTEAVEDFMYYNYNSPKSFDPSYLKSV  4947

Query  473   VEVVD-KYFDCYDGGCINANQVIVNNLDKSAGFP-FNKWGK------ARLYYDSMSYEDQ  524
                +  K+        I+ ++     L+  +G P  +  G        +  ++++  +  
Sbjct  4948  YTYMRDKFMKI-----ISTDE----KLNHQSGAPRMSSMGVGVSGFFQKTVWNALPEDFS  4998

Query  525   DALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRG  584
               L     + V+P  T +  K+    K R RT+ G S  ++   R  H+ +   +  T  
Sbjct  4999  PRLLDTASKTVMPFSTNIVKKFQRQKKTRVRTLGGSSFITSSIFRMLHKPVTNKMVQTAQ  5058

Query  585   ATV---VIGTSKFYGGWHNMLKTVYSD-VENPHLMGWDYPKCDRAMPNMLRIMASLVLAR  640
             A +   +IG SKF  G+H  L   + + +E+  +MG DY KCDR+ P + R +++ +   
Sbjct  5059  ANIGPFLIGISKFNLGFHKYLSAHHPNGIEDCQVMGADYTKCDRSFPVVCRALSAALFYE  5118

Query  641   KHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAV  700
                         +   NE    L +     G ++ KPGGT+SGD+TTA++NS +N    +
Sbjct  5119  LGHL----EPNNHWFLNEMFAFLLDPSFISGHIFNKPGGTTSGDSTTAFSNSFYNYFVHL  5174

Query  701   TANVNALLSTDGNKIADKYVRNLQHRLYEC-------LYRNRDVDTDFVNEFYAYLRKHF  753
                    L+T+    + + + NL H+ +         LY +   D +    F        
Sbjct  5175  YIQYLTFLTTEMPP-SYQPLCNLAHQAFSTGNTETYDLYFSMADDLNSTEYF--------  5225

Query  754   SMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFC  813
              +  LSDD+ +    T      + +  NF   L      ++  AK W+        HEFC
Sbjct  5226  -LHFLSDDSFIISKPTAFP---IFTPANFSMKLQNVLGCYVDPAKSWSADGEI---HEFC  5278

Query  814   SQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHP  873
             S H   + +   YV    PDP+ +L       +    D   +I + V+   +        
Sbjct  5279  SSHICKINEKYQYV----PDPNNMLAGLICAPEPTPQDK--LIWKLVATCAELAVFHFVN  5332

Query  874   NQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ  932
                + ++F         L   L    +  +SV L      +  E +FY  +     V Q
Sbjct  5333  PTLFNNIF--------HLLQSLHAEFVSEHSVNLL---PPKLLEIDFYTDLIDSEDVEQ  5380


 Score = 166 bits (421),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 50/191 (26%), Positives = 76/191 (40%), Gaps = 35/191 (18%)

Query  35    FDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIY---NLLK  91
              +I N+ VA   K  K N      ++    L D+             HE  IY    LL 
Sbjct  4581  INILNNNVASLRKVFKKNTASIPSENGTIMLKDT----------GTAHE--IYVAKQLLA  4628

Query  92    DCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNC  151
                 V +H     R + D   ++ R   T Y++ DLVYA    D       K +L+  + 
Sbjct  4629  KGLPVLQHA----RFNHDGTDYLIRYYTTPYSLGDLVYAYMVGD------FKHMLLALDI  4678

Query  152   CDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQD  211
              D+   +  ++            Y N  E++R  L   +   + +  A +   +TLDN D
Sbjct  4679  TDETCLDPGNYSS----------YYNFKEQLRNKLASVIPNVNKILAAELPLAITLDNID  4728

Query  212   LNGNWYDFGDF  222
             LNG  YDFGD+
Sbjct  4729  LNGFLYDFGDY  4739


>sp|F8RL29|R1AB_AMV79 Replicase polyprotein 1ab OS=Alphamesonivirus 
1 (isolate Aedes harrisoni/Cote d'Ivoire/C79/2004) OX=1552985 
GN=pp1ab PE=1 SV=1
Length=5088

 Score = 348 bits (892),  Expect = 7e-100, Method: Composition-based stats.
 Identities = 126/543 (23%), Positives = 215/543 (40%), Gaps = 80/543 (15%)

Query  434   SVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVV------EVVDKYFDCYDGG-  486
                    ++ +  +      D   +N  T   +   +F++      +++ +     DG  
Sbjct  3035  ETTYSSSYYIKTPSETSIRQDLELFNQNTAGSVSPTVFLMAIELLHQLLTEEISASDGKP  3094

Query  487   -CINA-NQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL  544
              C    ++V V N  KSAG P+ K+G +  +   +    +DA+  + + +    +T    
Sbjct  3095  NCPMVPSEVPVRNKHKSAGTPYRKFGDSE-FMRELYGNYRDAIVYHKRHSADQQLTLTIN  3153

Query  545   KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATR--GATVVIGTSKFYGGWHNML  602
             K A S  +R RT+  +SI  +   R  ++  L  I  T   G  ++IG +  YGGW  + 
Sbjct  3154  KVAPSKNHRDRTILAISINKSEPGRSLYRWNLDKIKYTSSLGGPILIGFTAQYGGWDKLY  3213

Query  603   KTVYSDVENPH--------LMGWDYPKCDRAMPNMLRIMASLVLA-------RKHTTCCS  647
             K +Y +    H        L G DYPK DR + NML++  + VL        +      +
Sbjct  3214  KYLYKNSPADHPDIAEHAVLGGKDYPKWDRRISNMLQLTTTTVLYSLIDPNTQSKLNNAT  3273

Query  648   LSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFN-----------I  696
              +  ++    E  QVL + ++ G  LY KPGG +SG++ TA  NS+ +           +
Sbjct  3274  PAQTWHEYMAETTQVLFDYLVFGNELYQKPGGVTSGNSRTADGNSLLHLLIDFYAIISQL  3333

Query  697   CQAVTANV-------NALLSTDGNKIADKYVRNLQHRLYECL-YRNRDVDTDFVNEFYAY  748
              Q+   NV       NAL  T   KI   Y+ +       C+  RN D+        +  
Sbjct  3334  IQSTPENVHLEVNLRNALCKTVFTKIPSDYIDS------SCVTLRNTDI-------LHTI  3380

Query  749   LRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETD-LTK  807
              R+      LSDD ++  +        +    +F SV +  ++  +++ K     D + +
Sbjct  3381  RRRVAKGAYLSDDGLIVIDPR------IIRYDDFMSVSHLISHYMIAQNKHKYHIDAIQR  3434

Query  808   GPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAY  867
                EF SQ T+      D VY P P+  R+  A    D+    D  + I R ++L    Y
Sbjct  3435  YAREFLSQDTIKF---GDMVY-PIPEFGRMYTAMLLSDNKNTLDPQINITRLLALFSYLY  3490

Query  868   -------PLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEF  920
                        HP  ++ D    Y++      DE+    LD   V    D        + 
Sbjct  3491  IYYFKYVDQPTHPILKFLDALRTYIELKLNTTDEI---FLDCIKVPDLQDVEFDLKNCDL  3547

Query  921   YEA  923
             YE 
Sbjct  3548  YEN  3550


>sp|A6YQT5|RPOA_PRRSV Replicase polyprotein 1ab OS=Porcine reproductive 
and respiratory syndrome virus OX=28344 PE=1 SV=2
Length=3931

 Score = 262 bits (669),  Expect = 3e-71, Method: Composition-based stats.
 Identities = 83/443 (19%), Positives = 161/443 (36%), Gaps = 70/443 (16%)

Query  443   AQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKS-  501
              + G    +  D  +Y+L T   +  L  V+ +V KY   + G C   ++        S 
Sbjct  2704  TEHGCEDAALRDLSKYDLSTQGFV--LPGVLRLVRKYLFAHVGKCPPVHRPSTYPAKNSM  2761

Query  502   AGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVS  561
             AG   N++       D  S  + D L A   R    T+T   LK     K + RT+ G +
Sbjct  2762  AGINGNRFPTK----DIQSVPEIDVLCAQAVRENWQTVTPCTLKKQYCGKKKTRTILGTN  2817

Query  562   ICSTMTNRQFHQKLLKS-IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHL---MGW  617
                 + +R     + +  +     + + +G +KF             +++ P L   +  
Sbjct  2818  NFIALAHRAALSGVTQGFMKKAFNSPIALGKNKF------------KELQAPVLGRCLEA  2865

Query  618   DYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKP  677
             D   CDR+ P ++R  A+ +L   +   C+  H    + N C  +L   V   G++  K 
Sbjct  2866  DLASCDRSTPAIVRWFAANLL---YELACAEEHLPSYVLNCCHDLL---VTQSGAV-TKR  2918

Query  678   GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDV  737
             GG SSGD  T+ +N+++++       V +   + G+     ++++               
Sbjct  2919  GGLSSGDPITSVSNTIYSLVIYAQHMVLSYFKS-GHPHGLLFLQDQLK------------  2965

Query  738   DTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEA  797
                     +  + K   +++ SDD V+     YA    + +   +   L           
Sbjct  2966  --------FEDMLKVQPLIVYSDDLVL-----YAESPSMPNYHWWVEHLNLMLGFQTDPK  3012

Query  798   KCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIE  857
             K    T +T  P    S     +  G   V    P+  RIL A  +              
Sbjct  3013  K----TTITDSP----SFLGCRIINGRQLV----PNRDRILAALAYHMKASNVSEYYASA  3060

Query  858   RFVSLAIDAYPLTKHPNQEYADV  880
                ++ +D+    ++  + + ++
Sbjct  3061  --AAILMDSCACLEYDPEWFEEL  3081


>sp|Q9WJB2|RPOA_PRRSR Replicase polyprotein 1ab OS=Porcine reproductive 
and respiratory syndrome virus (strain VR-2332) OX=300559 
GN=rep PE=1 SV=2
Length=3960

 Score = 262 bits (669),  Expect = 3e-71, Method: Composition-based stats.
 Identities = 83/443 (19%), Positives = 161/443 (36%), Gaps = 70/443 (16%)

Query  443   AQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKS-  501
              + G    +  D  +Y+L T   +  L  V+ +V KY   + G C   ++        S 
Sbjct  2733  TEHGCEDAALKDLSKYDLSTQGFV--LPGVLRLVRKYLFAHVGKCPPVHRPSTYPAKNSM  2790

Query  502   AGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVS  561
             AG   N++       D  S  + D L A   R    T+T   LK     K + RT+ G +
Sbjct  2791  AGINGNRFPTK----DIQSVPEIDVLCAQAVRENWQTVTPCTLKKQYCGKKKTRTILGTN  2846

Query  562   ICSTMTNRQFHQKLLKS-IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHL---MGW  617
                 + +R     + +  +     + + +G +KF             +++ P L   +  
Sbjct  2847  NFIALAHRAVLSGVTQGFMKKAFNSPIALGKNKF------------KELQTPVLGRCLEA  2894

Query  618   DYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKP  677
             D   CDR+ P ++R  A+ +L   +   C+  H    + N C  +L   V   G++  K 
Sbjct  2895  DLASCDRSTPAIVRWFAANLL---YELACAEEHLPSYVLNCCHDLL---VTQSGAV-TKR  2947

Query  678   GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDV  737
             GG SSGD  T+ +N+++++       V +   + G+     ++++               
Sbjct  2948  GGLSSGDPITSVSNTIYSLVIYAQHMVLSYFKS-GHPHGLLFLQDQLK------------  2994

Query  738   DTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEA  797
                     +  + K   +++ SDD V+     YA    + +   +   L           
Sbjct  2995  --------FEDMLKVQPLIVYSDDLVL-----YAESPTMPNYHWWVEHLNLMLGFQTDPK  3041

Query  798   KCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIE  857
             K    T +T  P    S     +  G   V    P+  RIL A  +              
Sbjct  3042  K----TAITDSP----SFLGCRIINGRQLV----PNRDRILAALAYHMKASNVSEYYASA  3089

Query  858   RFVSLAIDAYPLTKHPNQEYADV  880
                ++ +D+    ++  + + ++
Sbjct  3090  --AAILMDSCACLEYDPEWFEEL  3110


>sp|Q8B912|RPOA_PRRSB Replicase polyprotein 1ab OS=Porcine reproductive 
and respiratory syndrome virus (strain HB-1) OX=300563 
GN=rep PE=2 SV=3
Length=3961

 Score = 260 bits (664),  Expect = 1e-70, Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 158/443 (36%), Gaps = 70/443 (16%)

Query  443   AQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKS-  501
              + G    +  D  +Y+L T   +  L  V+ +V KY   + G C   ++        S 
Sbjct  2734  TEHGCEDAALRDLSKYDLVTQGFV--LPGVLRLVRKYLFAHVGKCPPVHRPSTYPAKNSM  2791

Query  502   AGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVS  561
             AG   N++       D  S  + D L A   R    T+T   LK     K + RT+ G +
Sbjct  2792  AGINGNRFPTK----DIQSVPEIDVLCAQAVRENWQTVTPCTLKKQYCGKKKTRTILGTN  2847

Query  562   ICSTMTNRQFHQKLLKS-IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHL---MGW  617
                 + +R     + +  +     + + +G +KF             +++ P L   +  
Sbjct  2848  NFIALAHRAALSGVTQGFMKKAFNSPIALGKNKF------------KELQTPVLGRCLEA  2895

Query  618   DYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKP  677
             D   CDR+ P ++R  A+ +L   +   C+  H    + N C  +L   V   G++  K 
Sbjct  2896  DLASCDRSTPAIVRWFAANLL---YELACAEEHLPSYVLNCCHDLL---VTQSGAV-TKR  2948

Query  678   GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDV  737
             GG SSGD  T+ +N+++++       V +   + G+     ++++               
Sbjct  2949  GGLSSGDPITSVSNTIYSLVIYAQHMVLSYFKS-GHPHGLLFLQDQLK------------  2995

Query  738   DTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEA  797
                     +  + K   +++ SDD V+     YA    + +   +   L           
Sbjct  2996  --------FEDMLKVQPLIVYSDDLVL-----YAESPSMPNYHWWVEHLNLMLGFQTDPK  3042

Query  798   KCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIE  857
             K       T     F       +  G   V    P+  RIL A  +              
Sbjct  3043  KTAITDSPT-----FLG---CRIINGRQLV----PNRDRILAALAYHMKASNVSEYYASA  3090

Query  858   RFVSLAIDAYPLTKHPNQEYADV  880
                ++ +D+    ++  + + ++
Sbjct  3091  --AAILMDSCACLEYDPEWFEEL  3111


>sp|Q9YN02|RPOA_PRRS1 Replicase polyprotein 1ab OS=Porcine reproductive 
and respiratory syndrome virus (strain 16244B) OX=300561 
GN=rep PE=1 SV=3
Length=3961

 Score = 259 bits (662),  Expect = 3e-70, Method: Composition-based stats.
 Identities = 83/440 (19%), Positives = 160/440 (36%), Gaps = 64/440 (15%)

Query  443   AQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKS-  501
              + G    +  D  +Y+L T   +  L  V+ +V KY   + G C   ++        S 
Sbjct  2734  TEHGCEDAALKDLSKYDLSTQGFV--LPGVLRLVRKYLFAHVGKCPPVHRPSTYPAKNSM  2791

Query  502   AGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVS  561
             AG   N++       D  S  + D L A   R    T+T   LK     K + RT+ G +
Sbjct  2792  AGINGNRFPTK----DIQSVPEIDVLCAQAVRENWQTVTPCTLKKQYCGKKKTRTILGTN  2847

Query  562   ICSTMTNRQFHQKLLKS-IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYP  620
                 + +R     + +  +     + + +G +KF        K + + V     +  D  
Sbjct  2848  NFIALAHRAALSGVTQGFMKKAFNSPIALGKNKF--------KELQTSVLG-RCLEADLA  2898

Query  621   KCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGT  680
              CDR+ P ++R  A+ +L   +   C+  H    + N C  +L   V   G++  K GG 
Sbjct  2899  SCDRSTPAIVRWFAANLL---YELACAEEHLPSYVLNCCHDLL---VTQSGAV-TKRGGL  2951

Query  681   SSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTD  740
             SSGD  T+ +N+++++       V +   + G+     ++++                  
Sbjct  2952  SSGDPITSVSNTIYSLVIYAQHMVLSYFKS-GHPHGLLFLQDQLK---------------  2995

Query  741   FVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCW  800
                  +  + K   +++ SDD V+     YA    + +   +   L           K  
Sbjct  2996  -----FEDMLKVQPLIVYSDDLVL-----YAESPTMPNYHWWVEHLNLMLGFQTDPKK--  3043

Query  801   TETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFV  860
               T +T  P    S     +  G   V    P+  RIL A  +                 
Sbjct  3044  --TAITDSP----SFLGCRIINGRQLV----PNRDRILAALAYHMKASNVSEYYASA--A  3091

Query  861   SLAIDAYPLTKHPNQEYADV  880
             ++ +D+    ++  + + ++
Sbjct  3092  AILMDSCACLEYDPEWFEEL  3111


>sp|Q68772|RPOA_SHFV Replicase polyprotein 1ab OS=Simian hemorrhagic 
fever virus OX=38143 GN=rep PE=2 SV=4
Length=3595

 Score = 246 bits (627),  Expect = 7e-66, Method: Composition-based stats.
 Identities = 86/442 (19%), Positives = 158/442 (36%), Gaps = 65/442 (15%)

Query  441   FFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCIN-ANQVIVNNLD  499
             ++ Q G  A +  D  ++NL T   I  L  V+ +V  Y     G          V + D
Sbjct  2333  YYTQHGCEAAALQDLKKFNLSTQGFI--LPEVLNIVRNYLLGTIGYRPAIYKPSTVPSND  2390

Query  500   KSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAG  559
               AG     +    L     +  D D L       V  T+T + LK    +K + RT+ G
Sbjct  2391  SHAGINGLSFSTKTL----QALPDIDELCEKAIAEVWQTVTPVTLKKQFCSKAKTRTILG  2446

Query  560   VSICSTMTNRQFHQKLLKSIA-ATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWD  618
              +  +++  R     + +    A + + + +G SKF             +V+    +  D
Sbjct  2447  TNAMASLALRALLSGVTQGFQLAGKNSPICLGKSKF--------DPCTFEVKG-RCLETD  2497

Query  619   YPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPG  678
                CDR+ P ++R  A+ +L       C+       + N C     ++++   S   K G
Sbjct  2498  LASCDRSTPAIVRHFATKLLF---EMACAERALPLYVVNCCH----DLIVTQTSAATKRG  2550

Query  679   GTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVD  738
             G SSGD  T+ AN+++++   V   V  LL  +G+ ++ K++            +    D
Sbjct  2551  GLSSGDPVTSIANTIYSLVLYVQHMVLTLLE-NGHPLSLKFLSG----------KLNFQD  2599

Query  739   TDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAK  798
                +  F  Y          SDD ++   S         + + +   L       +   K
Sbjct  2600  LYKLQAFIVY----------SDDLILLNESDDLP-----NFERWVPHLELALGFKVDPKK  2644

Query  799   CWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIER  858
                 ++      E+  +H  LV           P   R+L A  +  +        +   
Sbjct  2645  TVITSNPGFLGCEY--RHGWLV-----------PQKQRVLAALAYHVNAKDVHTYYINA-  2690

Query  859   FVSLAIDAYPLTKHPNQEYADV  880
               ++  DA  L+      + D+
Sbjct  2691  -TAILNDASALSAFEPDWFDDL  2711


>sp|A0MD28|RPOA_PRRSS Replicase polyprotein 1ab OS=Porcine reproductive 
and respiratory syndrome virus (isolate Pig/United 
States/SD 01-08/2001) OX=857306 PE=1 SV=2
Length=3838

 Score = 225 bits (574),  Expect = 3e-59, Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 159/443 (36%), Gaps = 64/443 (14%)

Query  440   FFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLD  499
             F   + G +  +  D  +Y+L T   +  L  V+ +V ++   + G              
Sbjct  2607  FMCTKHGTSKAAAEDLQKYDLSTQGFV--LPGVLRLVRRFIFGHIGKAPPLFLPSTYPAK  2664

Query  500   KS-AGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVA  558
              S AG    ++       D  S  + D + A   +    T+T   LK    +K + RT+ 
Sbjct  2665  NSMAGINGQRFPTK----DVQSIPEIDEMCARAVKENWQTVTPCTLKKQYCSKPKTRTIL  2720

Query  559   GVSICSTMTNRQFHQKLLKS-IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGW  617
             G +    + +R     + ++ +     + + +G +KF        K ++  V     +  
Sbjct  2721  GTNNFIALAHRSALSGVTQAFMKKAWKSPIALGKNKF--------KELHCTVAG-RCLEA  2771

Query  618   DYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKP  677
             D   CDR+ P ++R   + +L   +       +    + N C     ++V      + K 
Sbjct  2772  DLASCDRSTPAIVRWFVANLL---YELAGCEEYLPSYVLNCCH----DLVATQDGAFTKR  2824

Query  678   GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDV  737
             GG SSGD  T+ +N+V+++       V + L   G++I  K++                 
Sbjct  2825  GGLSSGDPVTSVSNTVYSLIIYAQHMVLSALKM-GHEIGLKFLEEQLK------------  2871

Query  738   DTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEA  797
                     +  L +   M++ SDD V+     YA +    +   +   L           
Sbjct  2872  --------FEDLLEIQPMLVYSDDLVL-----YAERPTFPNYHWWVEHLDLMLGFRTDPK  2918

Query  798   KCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIE  857
             K    T +T  P    S     ++ G   V    P+  RIL A  +   +   + +    
Sbjct  2919  K----TVITDKP----SFLGCRIEAGRQLV----PNRDRILAALAY--HMKAQNASEYYA  2964

Query  858   RFVSLAIDAYPLTKHPNQEYADV  880
                ++ +D+     H  + Y D+
Sbjct  2965  SAAAILMDSCACIDHDPEWYEDL  2987


>sp|Q04561|RPOA_PRRSL Replicase polyprotein 1ab OS=Porcine reproductive 
and respiratory syndrome virus (strain Lelystad) OX=11049 
GN=rep PE=1 SV=3
Length=3855

 Score = 225 bits (574),  Expect = 3e-59, Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 159/443 (36%), Gaps = 64/443 (14%)

Query  440   FFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLD  499
             F   + G +  +  D  +Y+L T   +  L  V+ +V ++   + G              
Sbjct  2624  FMCTKHGTSKAAAEDLQKYDLSTQGFV--LPGVLRLVRRFIFGHIGKAPPLFLPSTYPAK  2681

Query  500   KS-AGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVA  558
              S AG    ++       D  S  + D + A   +    T+T   LK    +K + RT+ 
Sbjct  2682  NSMAGINGQRFPTK----DVQSIPEIDEMCARAVKENWQTVTPCTLKKQYCSKPKTRTIL  2737

Query  559   GVSICSTMTNRQFHQKLLKS-IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGW  617
             G +    + +R     + ++ +     + + +G +KF        K ++  V     +  
Sbjct  2738  GTNNFIALAHRSALSGVTQAFMKKAWKSPIALGKNKF--------KELHCTVAG-RCLEA  2788

Query  618   DYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKP  677
             D   CDR+ P ++R   + +L   +       +    + N C     ++V      + K 
Sbjct  2789  DLASCDRSTPAIVRWFVANLL---YELAGCEEYLPSYVLNCCH----DLVATQDGAFTKR  2841

Query  678   GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDV  737
             GG SSGD  T+ +N+V+++       V + L   G++I  K++                 
Sbjct  2842  GGLSSGDPVTSVSNTVYSLVIYAQHMVLSALKM-GHEIGLKFLEEQLK------------  2888

Query  738   DTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEA  797
                     +  L +   M++ SDD V+     YA +    +   +   L           
Sbjct  2889  --------FEDLLEIQPMLVYSDDLVL-----YAERPTFPNYHWWVEHLDLMLGFRTDPK  2935

Query  798   KCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIE  857
             K    T +T  P    S     ++ G   V    P+  RIL A  +   +   + +    
Sbjct  2936  K----TVITDKP----SFLGCRIEAGRQLV----PNRDRILAALAY--HMKAQNASEYYA  2981

Query  858   RFVSLAIDAYPLTKHPNQEYADV  880
                ++ +D+     H  + Y D+
Sbjct  2982  SAAAILMDSCACIDHDPEWYEDL  3004


>sp|Q83017|RPOA_LDVP Replicase polyprotein 1ab OS=Lactate dehydrogenase 
elevating virus (strain Plagemann) OX=300016 GN=rep 
PE=1 SV=2
Length=3616

 Score = 200 bits (509),  Expect = 3e-51, Method: Composition-based stats.
 Identities = 66/316 (21%), Positives = 118/316 (37%), Gaps = 28/316 (9%)

Query  443   AQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKS-  501
              + G A+ ++ D  +++L     +  L  V+ +V +Y     G               S 
Sbjct  2434  TKHGCASAAEKDLQKFDLSRQGFV--LPGVLYMVRRYLSRLIGVRRRLFMPSTYPAKNSM  2491

Query  502   AGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVS  561
             AG    ++    L     S+ D DAL          T+T   LK    +K++ RT+ G +
Sbjct  2492  AGINGGRFPLTWL----QSHPDIDALCKRACEEHWQTVTPCTLKKQYCSKSKTRTILGTN  2547

Query  562   ICSTMTNRQFHQKLLKS-IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYP  620
                 +  R     + +  +    G  + +G +KF      +             +  D  
Sbjct  2548  NFVALGLRSALSGVTQGFMRKGIGTPICLGKNKFTPLPVRI---------GGRCLEADLA  2598

Query  621   KCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGT  680
              CDR+ P ++R   + +L        +       + N C  V+S M  C    + K GG 
Sbjct  2599  SCDRSTPAIIRWFTTNLLF---ELAGAEEWIPSYVLNCCHDVVSTMSGC----FDKRGGL  2651

Query  681   SSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNL--QHRLYE-CLYRNRDV  737
             SSGD  T+ +N+V+++       V +     G+KI   ++++     +L+E         
Sbjct  2652  SSGDPVTSISNTVYSLIIYAQHMVLSAFRC-GHKIGGLFLQDSLEMEQLFELQPLLVYSD  2710

Query  738   DTDFVNEFYAYLRKHF  753
             D  F NE       HF
Sbjct  2711  DVVFYNESDELPNYHF  2726


>sp|Q06502|RPOA_LDVC Replicase polyprotein 1ab OS=Lactate dehydrogenase 
elevating virus (strain C) OX=300015 GN=rep PE=3 SV=2
Length=3637

 Score = 197 bits (501),  Expect = 3e-50, Method: Composition-based stats.
 Identities = 84/483 (17%), Positives = 156/483 (32%), Gaps = 84/483 (17%)

Query  450   ISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKS-AGFPFNK  508
             +++ D  +++L     +  L  V+ +V +Y     G               S AG   N+
Sbjct  2462  LAECDLQKFDLSRQGFV--LPGVLYMVRRYLCRLVGIRRRLFLPSTYPAKNSMAGINGNR  2519

Query  509   WGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTN  568
             +      +   S+ D DAL     +    T+T   LK    +K + RT+ G +    +  
Sbjct  2520  FPT----HVVQSHPDIDALCERACKEHWQTVTPCTLKKQYCSKAKTRTILGTNNFVALGL  2575

Query  569   RQFHQKLLKS-IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMP  627
             R     + +  +    G+ + +G +KF      +         +   +  D   CDR+ P
Sbjct  2576  RSALSGVTQGFMRKGIGSPICLGKNKFTPLPTKV---------SGRCLEADLASCDRSTP  2626

Query  628   NMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATT  687
              ++R   + +L                + N C   +S M  C    + K GG SSGD  T
Sbjct  2627  AIIRWFTTNLLF---ELAGPEEWIPSYVLNCCHDAVSTMSGC----FDKRGGLSSGDPVT  2679

Query  688   AYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYA  747
             + +N+V+++       V +     G+K+   ++R                D+  + + + 
Sbjct  2680  SVSNTVYSLVIYAQHMVLSAFRC-GHKVGGLFLR----------------DSLEMEQLFE  2722

Query  748   YLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTK  807
                    +++ SDD VV ++ +            F   L          +K    +D   
Sbjct  2723  LQ----PLLVYSDD-VVLYDESSELPNYHF----FVDHLDLMLGFKTDRSKTVITSDPQF  2773

Query  808   GPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAY  867
                         +  G   V    P   RIL A  +                 ++ +DA 
Sbjct  2774  PG--------CRIAAGRVLV----PQRDRILAALAYHMKASCVSDYFASA--AAILMDAC  2819

Query  868   PLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTP  927
                 +    Y D+        RK                       R+  P FY  M+  
Sbjct  2820  ACCDYDEDWYFDLVCGIADCARK--------------------EGFRFPGPSFYVDMWKR  2859

Query  928   HTV  930
              +V
Sbjct  2860  LSV  2862


>sp|P19811|RPOA_EAVBU Replicase polyprotein 1ab OS=Equine arteritis 
virus (strain Bucyrus) OX=299386 GN=rep PE=1 SV=3
Length=3175

 Score = 178 bits (451),  Expect = 4e-44, Method: Composition-based stats.
 Identities = 68/350 (19%), Positives = 123/350 (35%), Gaps = 54/350 (15%)

Query  454   DYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCIN-ANQVIVNNLDKSAGFPFNKWGKA  512
             D  +YNL T   +  L  V  +V  Y     G          V + +  AG    ++   
Sbjct  1971  DLEKYNLSTQGFV--LPSVFSMVRAYLKEEIGDAPPLYLPSTVPSKNSQAGINGAEFPTK  2028

Query  513   RLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFH  572
              L     SY   D + + + ++ + T T    K    +K + R++ G +    +  R   
Sbjct  2029  SL----QSYCLIDDMVSQSMKSNLQTATMATCKRQYCSKYKIRSILGTNNYIGLGLRACL  2084

Query  573   QKLLKSIAAT--RGATVVIGTSKFYGGWHNMLKTVYSDVENPH--LMGWDYPKCDRAMPN  628
               +  +       G+ + +G SKF              +  P    +  D   CDR+ P 
Sbjct  2085  SGVTAAFQKAGKDGSPIYLGKSKF------------DPIPAPDKYCLETDLESCDRSTPA  2132

Query  629   MLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTA  688
             ++R  A+ ++                + N C     ++V+ G   + K GG SSGD  T+
Sbjct  2133  LVRWFATNLIF---ELAGQPELVHSYVLNCCH----DLVVAGSVAFTKRGGLSSGDPITS  2185

Query  689   YANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAY  748
              +N+++++       +   L     +IA+KY+            R+              
Sbjct  2186  ISNTIYSLVLYTQHMLLCGLEGYFPEIAEKYLDG------SLELRDMF------------  2227

Query  749   LRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAK  798
               K+  + I SDD V+    T  +Q   AS   +   L       +   K
Sbjct  2228  --KYVRVYIYSDDVVL----TTPNQHYAASFDRWVPHLQALLGFKVDPKK  2271


>sp|Q01901|POLG_PRSVH Genome polyprotein OS=Papaya ringspot virus 
(strain P / mutant HA) OX=31731 PE=3 SV=2
Length=3344

 Score = 60.5 bits (145),  Expect = 8e-08, Method: Composition-based stats.
 Identities = 69/369 (19%), Positives = 131/369 (36%), Gaps = 56/369 (15%)

Query  481   DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALF-------AYTKR  533
             +C +   I  ++VI+  L+  A       GK R Y++  + E + AL           + 
Sbjct  2624  ECPELEYITDSEVIIQALNMDAAVGALYTGKKRKYFEGSTVEHRQALVRKSCERLYEGRM  2683

Query  534   NVIPTITQMNLKYA---ISAKNRA------RTVAGVSICSTMTNRQFHQKLLKSIAATRG  584
              V     +  L+ A   ++ K R+       T+ G  +C    N  F+ K ++       
Sbjct  2684  GVWNGSLKAELRPAEKVLAKKTRSFTAAPLDTLLGAKVCVDDFNNWFYSKNME-------  2736

Query  585   ATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRA------MPNMLRIMASLVL  638
                 +G +KFY GW   LK  + D       GW Y   D +       P +L  + S+ L
Sbjct  2737  CPWTVGMTKFYKGWDEFLK-KFPD-------GWVYCDADGSQFDSSLTPYLLNAVLSIRL  2788

Query  639   ARKHTTCCSLSHRFYRLANECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNIC  697
                             L N   ++    ++   G++  K  G +SG  +T   N++  + 
Sbjct  2789  WAMED----WDIGEQMLKNLYGEITYTPILTPDGTIVKKFKGNNSGQPSTVVDNTLMVLI  2844

Query  698   QAVTANVNALLSTDGNK------IADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRK  751
                 A   A   T   +      I    +    H  +E +  +       +   Y + ++
Sbjct  2845  TMYYALRKAGYDTKTQEDMCVFYINGDDLCIAIHPDHEHVLDSFSSSFAELGLKYDFAQR  2904

Query  752   HF---SMMILSDDAVV---CFNSTYASQGLVASIKNFKSVL--YYQNNVFMSEAKCWTET  803
             H    ++  +S   ++    +      + +VA ++  KS L  +    +  +  + W   
Sbjct  2905  HRNKQNLWFMSHRGILIDDIYIPKLEPERIVAILEWDKSKLPEHRLEAITAAMIESWGYG  2964

Query  804   DLTKGPHEF  812
             DLT     F
Sbjct  2965  DLTHQIRRF  2973


>sp|P18479|POLG_ZYMVC Genome polyprotein OS=Zucchini yellow mosaic 
virus (strain California) OX=117128 PE=1 SV=2
Length=3080

 Score = 60.1 bits (144),  Expect = 1e-07, Method: Composition-based stats.
 Identities = 55/277 (20%), Positives = 107/277 (39%), Gaps = 46/277 (17%)

Query  454   DYYRYNLP---TMCDIRQLLFVVEVVDKY---FDCYDGGCINANQVIVNNLDKSAGFPFN  507
             D+++YN P      D  + L  V+ V +    F+  +   I   + I N+L+  A     
Sbjct  2356  DFFKYNKPVTVNQLDHDKFLGAVDGVIRMMCDFEFNECRFITDPEEIYNSLNMKAAIGAQ  2415

Query  508   KWGKARLYYDSMSYEDQDALFAYT-------KRNVIPTITQMNLK---YAISAKNRA---  554
               GK + Y++ +   D++ L   +        + +     +  L+      + K R    
Sbjct  2416  YRGKKKEYFEGLDDFDRERLLFQSCERLFNGYKGLWNGSLKAELRPLEKVRANKTRTFTA  2475

Query  555   ---RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVEN  611
                 T+ G  +C    N +F++K LK           +G +KFYGGW  +++++      
Sbjct  2476  APIDTLLGAKVCVDDFNNEFYRKNLK-------CPWTVGMTKFYGGWDKLMRSLPDGWLY  2528

Query  612   PHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS-EMVMC-  669
              H  G  +       P +L   A L++   +          + +  E  + L  E+V   
Sbjct  2529  CHADGSQFDS--SLTPALLN--AVLIIRSFYMED-------WWVGQEMLENLYAEIVYTP  2577

Query  670   ----GGSLYVKPGGTSSGDATTAYANSVFNICQAVTA  702
                  G+++ K  G +SG  +T   N++  +     A
Sbjct  2578  ILAPDGTIFKKFRGNNSGQPSTVVDNTLMVVISIYYA  2614


>sp|O36979|POLG_ZYMVS Genome polyprotein OS=Zucchini yellow mosaic 
virus (strain Singapore) OX=117130 PE=3 SV=2
Length=3083

 Score = 57.4 bits (137),  Expect = 7e-07, Method: Composition-based stats.
 Identities = 64/404 (16%), Positives = 141/404 (35%), Gaps = 66/404 (16%)

Query  454   DYYRYNLPTMC-------DIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPF  506
             D+++YN P +         +  +  V+ ++   F+  +   I   + I ++L+  A    
Sbjct  2359  DFFKYNKPVVVNQLDHDKFLGAVNGVIRMM-CDFEFNECRFITDPEEIYDSLNMKAAIGA  2417

Query  507   NKWGKARLYYDSMSYEDQDALFAYT-------KRNVIPTITQMNLK---YAISAKNRA--  554
                GK + Y++ +   D++ L   +        + +     +  L+      + K R   
Sbjct  2418  QYRGKKKEYFEGLDNFDRERLLFQSCERLFNGHKGLWNGSLKAELRPLEKVQANKTRTFT  2477

Query  555   ----RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVE  610
                  T+ G  +C    N +F+ K LK           +G +KFYGGW  +++ +     
Sbjct  2478  AAPIDTLLGAKVCVDDFNNEFYSKNLK-------CPWTVGMTKFYGGWDKLMRELPDGWL  2530

Query  611   NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS-EMVMC  669
               H  G  +       P +L   A L++   +          + +  E  + L  E+V  
Sbjct  2531  YCHADGSQFDS--SLTPALLN--AVLIIRSFYMED-------WWVGQEMLENLYAEIVYT  2579

Query  670   -----GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANV-----------NALLSTDGN  713
                   G+++ K  G +SG  +T   N++  +     A +             +   +G+
Sbjct  2580  PILAPDGTIFKKFRGNNSGQPSTVVDNTLMVVISIYYACMKFGWSYEEIENKLVFFANGD  2639

Query  714   KIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSD-----DAVVCFNS  768
              +    V++    L + +      +     +F     K   +  +S      D +     
Sbjct  2640  DLI-LAVKDEDSGLLDNM-SASFSELGLNYDFSERTHKREDLWFMSHQAMLVDGMYIPKL  2697

Query  769   TYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEF  812
                    +      K +++    +  +  + W  TDL +   +F
Sbjct  2698  EKERIVSILEWDRSKEIMHRTEAICAAMIEAWGHTDLLREIRKF  2741


>sp|P18478|POLG_WMV2U Genome polyprotein (Fragment) OS=Watermelon 
mosaic virus II (isolate USA) OX=148360 PE=1 SV=3
Length=1017

 Score = 57.0 bits (136),  Expect = 8e-07, Method: Composition-based stats.
 Identities = 49/278 (18%), Positives = 103/278 (37%), Gaps = 48/278 (17%)

Query  454  DYYRYNLPTMC-------DIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPF  506
            D+++YN P +          + +  V+ ++  +         + +++   +L+  A    
Sbjct  291  DFFKYNKPVVLNEVDFNAFEKAVEGVITMMVDFEFAECLFVTDPDEIY-GSLNMKAAVGA  349

Query  507  NKWGKARLYYDSMSYEDQDALFAYT-------KRNVIPTITQMNLK---YAISAKNRA--  554
               GK + Y+  M   D++ L   +       ++ +     +  L+      + K R   
Sbjct  350  QYKGKKQDYFSGMDSFDKERLLYLSCERLFNGEKGIWNGSLKAELRPIEKVQANKTRTFT  409

Query  555  ----RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVE  610
                 T+ G  +C    N QF+   LK           +G +KFYGGW  +++++     
Sbjct  410  AAPLDTLLGAKVCVDDFNNQFYSFNLK-------CPWTVGMTKFYGGWDKLMRSLPDGWT  462

Query  611  NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS-EMVMC  669
              H  G  +       P +L  + S         CC +    + +  E  + L  E+V  
Sbjct  463  YCHADGSQFDS--SLTPLLLNAVLS-------IRCCFMED--WWVGREMLENLYAEIVYT  511

Query  670  -----GGSLYVKPGGTSSGDATTAYANSVFNICQAVTA  702
                  G+++ K  G +SG  +T   N++  +     +
Sbjct  512  PILAPDGTIFKKFRGNNSGQPSTVVDNTLMVVIAMYYS  549


>sp|Q89330|POLG_ZYMVR Genome polyprotein OS=Zucchini yellow mosaic 
virus (strain Reunion Island) OX=117129 PE=3 SV=1
Length=3083

 Score = 56.2 bits (134),  Expect = 2e-06, Method: Composition-based stats.
 Identities = 52/281 (19%), Positives = 105/281 (37%), Gaps = 48/281 (17%)

Query  454   DYYRYNLPTMC-------DIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPF  506
             D+++YN P +         +  +  V+ ++   F+  +   I   + I ++L+  A    
Sbjct  2359  DFFKYNKPVIVNQLDHDKFLEAVDGVIRMM-CDFEFNECRFITDPEEIYSSLNMKAAIGA  2417

Query  507   NKWGKARLYYDSMSYEDQDALFAYT-------KRNVIPTITQMNLK---YAISAKNRA--  554
                GK + Y++ +   D + L   +        + +     +  L+      + K R   
Sbjct  2418  QYRGKKKEYFEGLDNFDMERLLFQSCERLFNGYKGLWNGSLKAELRPLEKVQANKTRTFT  2477

Query  555   ----RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVE  610
                  T+ G  +C    N +F+ K LK           +G SKFYGGW  +++ +     
Sbjct  2478  AAPIDTLLGAKVCVDDFNNEFYSKNLK-------CPWTVGMSKFYGGWDKLMRALPDGWL  2530

Query  611   NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS-EMVMC  669
               H  G  +       P +L   A L++   +          + +  E  + L  E+V  
Sbjct  2531  YCHADGSQFDS--SLTPALLN--AVLIIRSFYMED-------WWVGQEMLENLYAEIVYT  2579

Query  670   -----GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVN  705
                   G+++ K  G +SG  +T   N++  +     A + 
Sbjct  2580  PILAPDGTIFKKFRGNNSGQPSTVVDNTLMVVISIYYACIK  2620


>sp|A0AUJ5|POLG_BVY3 Genome polyprotein OS=Blackberry virus Y 
(isolate Blackberry plant/USA:Arkansas/C3ARK/2005) OX=686949 
PE=1 SV=1
Length=3491

 Score = 53.5 bits (127),  Expect = 1e-05, Method: Composition-based stats.
 Identities = 65/389 (17%), Positives = 126/389 (32%), Gaps = 41/389 (11%)

Query  401   LTNNVAFQTVKPGNFN---------KDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAIS  451
             L  N+ +Q   P  FN         + F  +    G  +      L H +   + N    
Sbjct  2617  LPVNIKYQCDMPTFFNTRHTYEGESQPFMAYLRECGDAETFFRPLLSH-YIPSNLNGDAF  2675

Query  452   DYDYYRYNLPT----MCDIRQLLFVVEVVDKYFDC-YDGGCINAN---QVIVNNLDKSAG  503
               D+++Y  P     +      +    V+ ++    Y+   I      + I ++L+K A 
Sbjct  2676  KKDFFKYGKPVPVGLVHGPSFKIASDRVIKRFERVGYERHSIPFEFDAEAIRDDLNKHAA  2735

Query  504   FPFNKWGKARLYYDSMSYE-DQDALFAYTKR--NVIPTITQMNLKYAISAK-----NRAR  555
                   GK   + D +S E   D   A   R  N    + + +LK  + +K     N+ R
Sbjct  2736  MGAQYVGKKEQHLDGISEEQFCDEFVASCCRLANNCDGVWKGSLKAELRSKEKVQENKTR  2795

Query  556   TVAGVSICSTMTNRQFHQKLLKSI-AATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHL  614
                       +  +       K   A        +G +K   GWH +LK++    E    
Sbjct  2796  VFTSAPYDVLLGGKACVMHFNKKFYANNTKGPWTVGINKLGLGWHRLLKSLP---EGFVY  2852

Query  615   MGWDYPKCDRA-MPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSL  673
                D  + D +  P ++  +  + +          +            ++S   M  GS+
Sbjct  2853  GTGDGSQFDSSLTPLLINEVCRIRMYFMQDDELGQAMLRGLYRQIIWTLIS---MPDGSV  2909

Query  674   YVKPGGTSSGDATTAYANSVF-NICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLY  732
               K  G  SG  +T   N++   +          +   + + I   Y         + L 
Sbjct  2910  VRKAKGNPSGQPSTVDDNTIMVMLAVEYVFAYLGITQEEMDTIFKYYANG------DDLI  2963

Query  733   RNRDVDTDFVNEFYAYLRKHFSMMILSDD  761
                  D + +   + +L  H  +  + +D
Sbjct  2964  FAIHPDRESILNEFTHLFAHLGLNYIFED  2992


>sp|O56075|POLG_PEMVM Genome polyprotein OS=Peanut mottle virus 
(strain M) OX=103926 PE=3 SV=1
Length=3099

 Score = 53.1 bits (126),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 46/256 (18%), Positives = 96/256 (38%), Gaps = 22/256 (9%)

Query  454   DYYRY-NLPTMCDIRQLLF---VVEVVDKYFDCYDGGC--INANQVIVNNLDKSAGFPFN  507
             D Y+Y N   + ++ +  F   V  V+    D   G C  +   + I+++L+  A     
Sbjct  2375  DLYKYQNEIIVGEVDKDAFDNAVEAVIYLLDDLGFGECAYVTDEEAILDSLNMKAAVGAL  2434

Query  508   KWGKARLYYDSMSYEDQDALFA-------YTKRNVIPTITQMNLK-YAISAKNRARTVAG  559
               GK + Y++S+S  ++  +         Y +  V     +  L+     A N+ RT   
Sbjct  2435  YKGKKKEYFESLSEPEKHHIVQASCERLFYGEMGVWNGSLKAELRPKEKVALNKTRTFTA  2494

Query  560   VSICSTMTNRQFHQKLLKSIAA-TRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWD  618
               I + +  +           +        +G +KFYGGW  +++ +       H  G  
Sbjct  2495  APIDTLLGGKCCVDDFNNRFYSLNIEGPWTVGMTKFYGGWDKLMRKLPDGWRYCHADGSQ  2554

Query  619   YPKCDRAMPNMLRI-MASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKP  677
             +       P +L   +A  ++  +         R +        + + ++   G++  K 
Sbjct  2555  FDS--SLTPFLLNAVLAVRLMFMEDWWVGEQMLRNFY----TEIIYTPILTPDGTIVKKF  2608

Query  678   GGTSSGDATTAYANSV  693
              G +SG  +T   N++
Sbjct  2609  KGNNSGQPSTVVDNTL  2624


>sp|P89876|POLG_LMVE Genome polyprotein OS=Lettuce mosaic virus 
(strain E) OX=117131 PE=3 SV=1
Length=3255

 Score = 49.3 bits (116),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 75/453 (17%), Positives = 147/453 (32%), Gaps = 95/453 (21%)

Query  454   DYYRYNLPTMCDI----RQLLFVVEVVDKYFDCYDGGC--INANQVIVNNLDKSAGFPFN  507
             D  +Y+ P    I      L     V+ +       GC  +   + I   L+  A     
Sbjct  2529  DIMKYSTPITVGIVDCDTFLKAEKGVIKRLEKLGFSGCEYVTDEEAIFQALNMKAAVGAL  2588

Query  508   KWGKARLYYDSMSYEDQDALFAYT----------------KRNVIPTITQMNLKYAISAK  551
               GK R Y++S   E+++ +   +                K  + P    M  K  +   
Sbjct  2589  YSGKKRDYFESYGPEEKENILRESCKRLYTGKFGVWNGSLKSELRPMEKVMANKTRVFTA  2648

Query  552   NRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVEN  611
                 T+    +C    N  F+ K ++       A   +G +KFYGGW+ +L  +      
Sbjct  2649  APLDTLLAGKVCVDDFNNYFYSKNIE-------APWTVGMTKFYGGWNELLTKLPD----  2697

Query  612   PHLMGWDYPKCDRAM--PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC  669
                 GW Y   D +    ++   + + VL  +             L N   +++   ++ 
Sbjct  2698  ----GWVYCDADGSQFDSSLSPFLINSVLRIRLKFMEDWDLGEQMLKNLYTEIVYTAILT  2753

Query  670   GGSLYVKP-GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLY  728
               S  VK   G +SG  +T   N++          V   ++   +K+             
Sbjct  2754  PDSTIVKKFKGNNSGQPSTVVDNTL---------MVVLAMTYTLHKL-------------  2791

Query  729   ECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYY  788
                         F +E    + K+F   +  DD ++     Y S      +  F+     
Sbjct  2792  -----------GFEDEEQDSMCKYF---VNGDDLIIAIKPEYESL-----LDQFQ-----  2827

Query  789   QNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIV  848
               + F S    +     T+   E        +K+    +++P  +P RI+     ++   
Sbjct  2828  --HCFKSLGLNYDFNSRTRKREELWFMSHCGIKKDG--IFIPKLEPERIVS---ILEWDR  2880

Query  849   KTDGTLMIERFVSLAIDA--YPLTKHPNQEYAD  879
                    +E   +  I++  Y    H  +++  
Sbjct  2881  SDQPVHRLEAICAAMIESWGYDKLTHEIRKFYK  2913


>sp|Q65399|POLG_BCMNN Genome polyprotein OS=Bean common mosaic 
necrosis virus (strain NL-3) OX=500578 PE=2 SV=1
Length=3066

 Score = 49.3 bits (116),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 50/279 (18%), Positives = 100/279 (36%), Gaps = 44/279 (16%)

Query  454   DYYRYNLPTMCDIRQLLFVVEVVD--KYFDCYDG--GCINANQV--IVNNLDKSAGFPFN  507
             D+++YN P M +        + V+  K      G   C+       I ++L+  A     
Sbjct  2360  DFFKYNKPVMLNEVNFEAFEKAVEGVKIMMIEFGFNECVYVTDPDDIYDSLNMKAAVGAQ  2419

Query  508   KWGKARLYYDSMSYEDQDALFA-------YTKRNVIPTITQMNLK---YAISAKNRA---  554
               GK + Y+  M   D++ L         Y ++ +     +  L+      + K R    
Sbjct  2420  YKGKKQDYFQDMDSFDKERLLFLSCERLFYGQKGIWNGSLKAELRPLEKVQANKTRTFTA  2479

Query  555   ---RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVEN  611
                 T+ G  +C    N QF+   L            +G +KFYGGW  +++ +      
Sbjct  2480  APIDTLLGAKVCVDDFNNQFYSFNLI-------CPWTVGMTKFYGGWDKLMRALPDGWVY  2532

Query  612   PHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFY----RLANECAQVLSEMV  667
              H  G  +             +  L+L    +        ++     L N  A+++   +
Sbjct  2533  CHADGSQFDS----------SLTPLLLNSVLSIRSFFMEDWWVGKEMLENLYAEIVYTPI  2582

Query  668   MC-GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVN  705
             +   G+++ K  G +SG  +T   N++  +     + + 
Sbjct  2583  LTPDGTIFKKFRGNNSGQPSTVVDNTLMVVISMYYSCIK  2621


>sp|P17765|POLG_BYMV Genome polyprotein OS=Bean yellow mosaic 
virus OX=12197 PE=3 SV=2
Length=3056

 Score = 48.9 bits (115),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 89/268 (33%), Gaps = 26/268 (10%)

Query  454   DYYRYNLP---TMCDIRQLLFVVEVVDKYFDCYD-GGC--INANQVIVNNLDKSAGFPFN  507
             D  +Y  P    + D R      E V    +      C  +     I++ L+  A     
Sbjct  2337  DLMKYATPIEVGLVDTRCFERSFEKVQNMLELKGFSKCNYVTYGPDILSALNMKAAMGAL  2396

Query  508   KWGKARLYYDSMSYEDQDALF-------AYTKRNVIPTITQMNLKYAISA-KNRARTVAG  559
               GK + ++  +S E  D +           +  V     +  L+       N+ R+   
Sbjct  2397  YSGKKKDHFSEISEEKFDNILQASCERLYSGRMGVWNGSLKAELRPQEKVLANKTRSFTA  2456

Query  560   VSICSTMTNRQFHQKLLKSIAATR-GATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWD  618
               I + +  +           +        +G +KFYGGW  +L ++          GW 
Sbjct  2457  APIDTLLAGKVCVDDFNNKFYSLHLKIPSTVGITKFYGGWDRLLDSLPD--------GWV  2508

Query  619   YPKCDRAM--PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC-GGSLYV  675
             Y   D +    ++   + + VL  +             L N   +++   ++   G++  
Sbjct  2509  YCDADGSQFDSSLTPYLLNAVLEMRLRLMEEWDLGEQMLKNLYTEIVYTPILTPDGTIVK  2568

Query  676   KPGGTSSGDATTAYANSVFNICQAVTAN  703
             K  G +SG  +T   N++  I     A 
Sbjct  2569  KFKGNNSGQPSTVVDNTLMVIMAVYYAA  2596


>sp|Q01681|POLG_PPVEA Genome polyprotein (Fragment) OS=Plum pox 
potyvirus (strain El amar) OX=31738 PE=2 SV=1
Length=1518

 Score = 48.1 bits (113),  Expect = 4e-04, Method: Composition-based stats.
 Identities = 59/356 (17%), Positives = 119/356 (33%), Gaps = 48/356 (13%)

Query  492   QVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFA-------YTKRNVIPTITQMNL  544
             + I + L+  A       GK R Y+   S  +++             K+ V     +  L
Sbjct  784   EEIFSALNMKAAVGALYSGKKRDYFKDTSELEKEEFVRASCKRLFMGKKGVWNGSLKAEL  843

Query  545   K-YAISAKNRAR--------TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFY  595
             +       N+ R        T+ G  +C    N QF+   L            +G +KF 
Sbjct  844   RPKEKVEANKTRSFTAAPIDTLLGGKVCVDDFNNQFYSLNLH-------CPWSVGMTKFR  896

Query  596   GGWHNMLKTVYSDVENPHLMGWDYPKCDRAM--PNMLRIMASLVLARKHTTCCSLSHRFY  653
             GGW  +L+ +          GW Y   D +    ++   + + VL  +            
Sbjct  897   GGWDKLLRALPD--------GWIYCDADGSQFDSSLSPYLINAVLNIRLAFMEEWDIGEQ  948

Query  654   RLANECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDG  712
              L+N   +++   +    G++  K  G +SG  +T   N++  I     + +      D 
Sbjct  949   MLSNLYTEIVYTPIATPDGTIVKKFKGNNSGQPSTVVDNTLMVILAMTYSLLKLGYHPDT  1008

Query  713   NKIADKYVRN------LQHRLYECLYRNRDVDTDFVNEFYAYLRKHFS---MMILSDDAV  763
             ++   +Y  N        H  YE +Y         +   Y +  K  +   +  +S   +
Sbjct  1009  HECICRYFVNGDDLVLAVHPAYESIYDELQHHFSQLGLNYTFTTKTENKEDLWFMSHKGI  1068

Query  764   VC---FNSTYASQGL--VASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCS  814
             +C   +      + +  +         ++    +  S  + W   +L +   +F S
Sbjct  1069  MCEGMYIPKLEPERIVSILEWDRSSEPIHRLEAICASMVEAWGYKELLREIRKFYS  1124


>sp|P36287|POLG_SMSV4 Genome polyprotein (Fragment) OS=San Miguel 
sea lion virus serotype 4 OX=36407 GN=ORF1 PE=3 SV=2
Length=1214

 Score = 48.1 bits (113),  Expect = 4e-04, Method: Composition-based stats.
 Identities = 32/178 (18%), Positives = 68/178 (38%), Gaps = 12/178 (7%)

Query  553   RARTVAGVSICSTMTNRQFHQKLLKSIAATRG-ATVVIGTSKFYGGWHNMLKTVYSDVEN  611
             + R + G  +  +   R   +++ +SI A      + +G +       ++ K +     +
Sbjct  868   KRRLIWGCDVGVSTVCRAAFKRVSESIMANHALGFIQVGINMDGPAVEDLFKRLERPKHD  927

Query  612   PHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMV-MCG  670
              + +  DY K D   P  +   +  +L          + +   + + CA + S  + +  
Sbjct  928   RYCV--DYSKWDSTQPPKVTSQSIDILRH-------FTDKSPIVDSACATLKSNPIGIFN  978

Query  671   GSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLY  728
             G  +   GG  SG   T+  NS+ N C  V + V   L   G +++     ++    Y
Sbjct  979   GVAFKVAGGLPSGMPLTSIINSL-NHCLMVGSAVVKALEDSGVQVSWNIFDSMDLFTY  1035


>sp|P20234|POLG_OMV Genome polyprotein (Fragment) OS=Ornithogalum 
mosaic virus OX=12204 PE=3 SV=1
Length=1136

 Score = 48.1 bits (113),  Expect = 4e-04, Method: Composition-based stats.
 Identities = 61/334 (18%), Positives = 111/334 (33%), Gaps = 49/334 (15%)

Query  454  DYYRYNLPTMC----DIRQLLFVVEVVDKYFDCYDGGC--INANQVIVNNLDKSAGFPFN  507
            D  +Y+ P +      I+       V+  + D     C  +  +  +  NL+  A     
Sbjct  437  DIMKYSKPIVLGEVDFIKFEEGYNNVLRMFHDIGFEKCEYVTDSMEVYKNLNLKAAVGAM  496

Query  508  KWGKARLYYDSMSYEDQDALFAYT-------KRNVIPTITQMNL----KYAISAKNRA--  554
              GK + Y++ MS ++   L   +       K  V     +  L    K     K R   
Sbjct  497  YTGKKQQYFEGMSEDEIHQLVIASCFRLWSGKFGVWNGSLKAELRPLEKVQAC-KTRTFT  555

Query  555  ----RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVE  610
                 T+ G  +C    N QF+ K L        A   +G  K+Y GW   +  +     
Sbjct  556  AAPLDTLLGAKVCVDDFNAQFYDKHLT-------APWTVGICKYYKGWDTFMNKLPE---  605

Query  611  NPHLMGWDYPKCDRAM--PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVM  668
                 GW Y   D +    ++   + + VL  +             L+N   +++   + 
Sbjct  606  -----GWLYCDADGSQFDSSLTPFLINSVLRLRLEFMEDWDIGARMLSNLYTEIIYTPIA  660

Query  669  C-GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRL  727
               G++  K  G +SG  +T   N++  +  A+   +  L       I  + + +     
Sbjct  661  TPDGTVVKKFRGNNSGQPSTVVDNTLM-VVLAMNYALAKL------SIPYEEMDSRIRYF  713

Query  728  YECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDD  761
                     V+     E    L+  FS + L  D
Sbjct  714  ANGDDLLVAVEPTKGGEILDSLQASFSELGLIYD  747


>sp|Q01500|POLG_PEMVC Genome polyprotein OS=Pepper mottle virus 
(isolate California) OX=31737 PE=1 SV=1
Length=3068

 Score = 48.1 bits (113),  Expect = 5e-04, Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 79/219 (36%), Gaps = 22/219 (10%)

Query  488   INANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALF-------AYTKRNVIPTIT  540
             I   + I   L+ +        GK + Y++  + ED+  +           K  V     
Sbjct  2388  ITDEEEIFKALNITTAVGAMYGGKKKEYFEKFTTEDKAEILRQSCLRLYTGKLGVWEWAL  2447

Query  541   QMNLK-YAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVV--IGTSKFYGG  597
             +  L+       N+ RT     I + +  +     L      ++       +G +KFYGG
Sbjct  2448  KAELRSKEKIEANKTRTFTAAPIDTLLGGKVCVDDLNNQF-YSKNIECCWTVGMTKFYGG  2506

Query  598   WHNMLKTVYSDVENPHLMGWDYPKCDRAM--PNMLRIMASLVLARKHTTCCSLSHRFYRL  655
             W  +L  + +        GW Y   D +    ++   + + VL  ++         +  L
Sbjct  2507  WDKLLTALPA--------GWIYCDADGSQFDSSLTPYLINAVLTIRYAFMEDWDIGYKML  2558

Query  656   ANECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSV  693
              N   +++   +    G++  K  G +SG  +T   NS+
Sbjct  2559  QNLYTEIIYTPISTPDGTIVKKFRGNNSGQPSTVVDNSL  2597


>sp|P19723|POLG_PRSVP Genome polyprotein (Fragment) OS=Papaya 
ringspot virus (strain P / mutant HA 5-1) OX=31730 PE=3 SV=1
Length=675

 Score = 47.7 bits (112),  Expect = 5e-04, Method: Composition-based stats.
 Identities = 50/278 (18%), Positives = 97/278 (35%), Gaps = 40/278 (14%)

Query  556  TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM  615
            T+ G  +C    N  F+ K ++           +G +KFY GW   L+  + D       
Sbjct  46   TLLGAKVCVDDFNNWFYSKNME-------CPWTVGMTKFYKGWDEFLR-KFPD-------  90

Query  616  GWDYPKCDRA------MPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC  669
            GW Y   D +       P +L  + S+ L                L N   ++    ++ 
Sbjct  91   GWVYCDADGSQFDSSLTPYLLNAVLSIRLWAMED----WDIGEQMLKNLYGEITYTPILT  146

Query  670  -GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNK------IADKYVRN  722
              G++  K  G +SG  +T   N++  +     A   A   T   +      I    +  
Sbjct  147  PDGTIVKKFKGNNSGQPSTVVDNTLMVLITMYYALRKAGYDTKTQEDMCVFYINGDDLCI  206

Query  723  LQHRLYECLYRNRDVDTDFVNEFYAYLRKHF---SMMILSDDAVV---CFNSTYASQGLV  776
              H  +E +  +       +   Y + ++H    ++  +S   ++    +      + +V
Sbjct  207  AIHPDHEHVLDSFSSSFAELGLKYDFAQRHRNKQNLWFMSHRGILIDDIYIPKLEPERIV  266

Query  777  ASIKNFKSVL--YYQNNVFMSEAKCWTETDLTKGPHEF  812
            A ++  KS L  +    +  +  + W   DLT     F
Sbjct  267  AILEWDKSKLPEHRLEAITAAMIESWGHGDLTHQIRRF  304


>sp|Q65730|POLG_BSTV1 Genome polyprotein OS=Brome streak virus 
(strain 11-Cal) OX=117138 PE=1 SV=1
Length=3093

 Score = 48.1 bits (113),  Expect = 5e-04, Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 107/289 (37%), Gaps = 39/289 (13%)

Query  494   IVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTK-------RNVIPTITQMNLKY  546
             I N+L+  A       GK + Y+   + E+ + +F  +          V   + +  L+ 
Sbjct  2392  IFNDLNLDAAMGALYAGKKKDYFVEATDEEIEEMFLRSAGKICANGHGVWSALLKAELRP  2451

Query  547   AIS-AKNRART--------VAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGG  597
             A   A N+ RT        + G        N+QF+++ L            +G +KF  G
Sbjct  2452  AEKVAANKTRTFTSAPIDILFGAKAVVDDFNKQFYKRHLL-------GPWTVGINKFNKG  2504

Query  598   WHNMLKTVYSDVENPHLMGWDYPKCDRA-MPNMLRIMASLVLARKHTTCCSLSHRFYRLA  656
             W  + +++         +  D  + D +  P ++  + ++ L        +       L 
Sbjct  2505  WDLLARSLMR---YEWFIDADGSQFDSSITPLLMNAVLTIRLYFMERDDITE----LMLR  2557

Query  657   NECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGN-K  714
             N   Q++S  ++   G +  K  G +SG  +T   N++  +     A   A+  +DG+  
Sbjct  2558  NLYTQIISTCMLAEDGLIVQKHRGNNSGQPSTVVDNTLCLMIAMEYARQRAI--SDGHLN  2615

Query  715   IADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAV  763
             +  +YV N    L       +DV      ++     K   +    DDA 
Sbjct  2616  MQMRYVCNGDDLLINANEEAKDVVQGKYEQYI----KELELNYCFDDAF  2660


>sp|P17766|POLG_PPVNA Genome polyprotein OS=Plum pox potyvirus 
(isolate NAT) OX=12213 PE=3 SV=1
Length=3125

 Score = 48.1 bits (113),  Expect = 5e-04, Method: Composition-based stats.
 Identities = 57/308 (19%), Positives = 108/308 (35%), Gaps = 44/308 (14%)

Query  494   IVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALF-------AYTKRNVIPTITQMNLK-  545
             I + L+  A       GK R Y++++S +D+++            K+ V     +  L+ 
Sbjct  2410  IFSALNMKAAVGALYSGKKRDYFENVSDQDKESFVRASCKRLFMGKKGVWNGSLKAELRP  2469

Query  546   YAISAKNRAR--------TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGG  597
                   N+ R        T+ G  +C    N QF+   L            +G +KF GG
Sbjct  2470  KEKVEANKTRSFTAAPIDTLLGGKVCVDDFNNQFYSLNLH-------CPWSVGMTKFRGG  2522

Query  598   WHNMLKTVYSDVENPHLMGWDYPKCDRAM--PNMLRIMASLVLARKHTTCCSLSHRFYRL  655
             W  +LK +          GW Y   D +    ++   + + VL  +             L
Sbjct  2523  WDKLLKALPE--------GWIYCDADGSQFDSSLSPYLINAVLNIRLAFMEEWDIGEQML  2574

Query  656   ANECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNK  714
             +N   +++   +    G++  K  G +SG  +T   N++  I     + +      D + 
Sbjct  2575  SNLYTEIVYTPIATPDGTIVKKFKGNNSGQPSTVVDNTLMVILAMTYSLLKLGHHPDTHD  2634

Query  715   IADKYVRN------LQHRLYECLYRNRDVDTDFVNEFYAYLRK---HFSMMILSDDAVVC  765
                +Y  N        H  YE +Y         +   Y +  K      +  +S   V+ 
Sbjct  2635  CICRYFVNGDDLVLAVHPAYESIYDELQEHFSQLGLNYTFTTKTENKEELWFMSHKGVL-  2693

Query  766   FNSTYASQ  773
             ++  Y  +
Sbjct  2694  YDDMYIPK  2701


>sp|Q65729|POLG_BSTVG Genome polyprotein (Fragment) OS=Brome streak 
virus (strain German) OX=117139 PE=2 SV=1
Length=942

 Score = 47.4 bits (111),  Expect = 7e-04, Method: Composition-based stats.
 Identities = 54/289 (19%), Positives = 108/289 (37%), Gaps = 39/289 (13%)

Query  494  IVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTK-------RNVIPTITQMNLKY  546
            I N+L+  A       GK + Y+   + E+ + +F  +          V   + +  L+ 
Sbjct  225  IFNDLNLDAAMGALYAGKKKDYFVEATDEEIEEMFLRSAGKICANGHGVWSALLKAELRP  284

Query  547  AIS-AKNRART--------VAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGG  597
            A   A N+ RT        + G        N+QF+++ L            +G +KF  G
Sbjct  285  AEKVAANKTRTFTSAPIDILFGAKAVVDDFNKQFYKRHLL-------GPWTVGINKFNKG  337

Query  598  WHNMLKTVYSDVENPHLMGWDYPKCDRA-MPNMLRIMASLVLARKHTTCCSLSHRFYRLA  656
            W  + +++         +  D  + D +  P ++  + ++ L        +       L 
Sbjct  338  WDLLARSLMR---YEWFIDADGSQFDSSITPLLMNAVLTIRLYFMERDDITE----LMLR  390

Query  657  NECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGN-K  714
            N   Q++S  ++   G +  K  G +SG  +T   N++  +     A   A+  +DG+  
Sbjct  391  NLYTQIISTCMLAEDGLIVQKHRGNNSGQPSTVVDNTLCLMIAMEYARQRAI--SDGHLN  448

Query  715  IADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAV  763
            +  +YV N    L       ++V  +   ++     K   +    DDA 
Sbjct  449  MQMRYVCNGDDLLINANEEAKEVVQNKYEQYI----KELELNYCFDDAF  493


>sp|P09814|POLG_TVMV Genome polyprotein OS=Tobacco vein mottling 
virus OX=12228 PE=1 SV=2
Length=3023

 Score = 47.4 bits (111),  Expect = 8e-04, Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 82/234 (35%), Gaps = 34/234 (15%)

Query  488   INANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYT----------------  531
             +   Q I N L+  A       GK + Y++ +S +    L   +                
Sbjct  2354  VTDEQTIKNALNMDAAVGALYSGKKKQYFEDLSDDAVANLVQKSCLRLFKNKLGVWNGSL  2413

Query  532   KRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGT  591
             K  + P    +  K          T+ G  +C    N  F+ K ++           +G 
Sbjct  2414  KAELRPFEKLIENKTRTFTAAPIETLLGGKVCVDDFNNHFYSKHIQ-------CPWSVGM  2466

Query  592   SKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAM--PNMLRIMASLVLARKHTTCCSLS  649
             +KFYGGW+ +L  +          GW Y   D +    ++   + + VL  + ++     
Sbjct  2467  TKFYGGWNELLGKLPD--------GWVYCDADGSQFDSSLSPYLINAVLRLRLSSMEEWD  2518

Query  650   HRFYRLANECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNICQAVTA  702
                  L N   +++   +    G++  K  G +SG  +T   N++  +     A
Sbjct  2519  VGQKMLQNLYTEIVYTPISTPDGTIVKKFKGNNSGQPSTVVDNTLMVVLAMYYA  2572


>sp|P13529|POLG_PPVD Genome polyprotein OS=Plum pox potyvirus 
(strain D) OX=12212 PE=1 SV=2
Length=3141

 Score = 47.4 bits (111),  Expect = 0.001, Method: Composition-based stats.
 Identities = 56/308 (18%), Positives = 107/308 (35%), Gaps = 44/308 (14%)

Query  494   IVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALF-------AYTKRNVIPTITQMNLK-  545
             I + L+  A       GK R Y+ ++S +D+++            K+ V     +  L+ 
Sbjct  2411  IFSALNMKAAVGALYSGKKRDYFKNVSDQDKESFVRASCKRLFMGKKGVWNGSLKAELRP  2470

Query  546   YAISAKNRAR--------TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGG  597
                   N+ R        T+ G  +C    N QF+   L            +G +KF GG
Sbjct  2471  KEKVEANKTRSFTAAPIDTLLGGKVCVDDFNNQFYSLNLH-------CPWSVGMTKFRGG  2523

Query  598   WHNMLKTVYSDVENPHLMGWDYPKCDRAM--PNMLRIMASLVLARKHTTCCSLSHRFYRL  655
             W  +L+ +          GW Y   D +    ++   + + VL  +             L
Sbjct  2524  WDKLLRALPE--------GWIYCDADGSQFDSSLSPYLINAVLNIRLAFMEEWDIGEQML  2575

Query  656   ANECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNK  714
             +N   +++   +    G++  K  G +SG  +T   N++  I     + +      D + 
Sbjct  2576  SNLYTEIVYTPIATPDGTIVKKFKGNNSGQPSTVVDNTLMVILAMTYSLLKLGYHPDTHD  2635

Query  715   IADKYVRN------LQHRLYECLYRNRDVDTDFVNEFYAYLRK---HFSMMILSDDAVVC  765
                +Y  N        H  YE +Y         +   Y +  K      +  +S   V+ 
Sbjct  2636  CICRYFVNGDDLVLAVHPAYESIYDELQEHFSQLGLNYTFATKTENKEELWFMSHKGVL-  2694

Query  766   FNSTYASQ  773
             ++  Y  +
Sbjct  2695  YDDMYIPK  2702


>sp|P21231|POLG_SBMVN Genome polyprotein OS=Soybean mosaic virus 
(strain N) OX=12223 PE=1 SV=2
Length=3066

 Score = 47.0 bits (110),  Expect = 0.001, Method: Composition-based stats.
 Identities = 49/277 (18%), Positives = 99/277 (36%), Gaps = 46/277 (17%)

Query  454   DYYRYNLPT-------MCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPF  506
             D+++YN P            R +  V +++   FD  +   +     I ++L+  A    
Sbjct  2356  DFFKYNKPVVLNEVDFQSFERAVAGV-KLMMMEFDFKECVYVTDPDEIYDSLNMKAAVGA  2414

Query  507   NKWGKARLYYDSMSYEDQDALFA-------YTKRNVIPTITQMNLK---YAISAKNRA--  554
                GK + Y+  M   D++ L         Y ++ V     +  L+      + K R   
Sbjct  2415  QYKGKKQDYFSGMDSFDKERLLYLSCERLFYGEKGVWNGSLKAELRPIEKVQANKTRTFT  2474

Query  555   ----RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVE  610
                  T+ G  +C    N QF+   L            +G +KFY GW  +++++     
Sbjct  2475  AAPIDTLLGAKVCVDDFNNQFYSLNLT-------CPWTVGMTKFYRGWDKLMRSLPDGWV  2527

Query  611   NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFY----RLANECAQVLSEM  666
               H  G  +             +  L+L             ++     L N  A+++   
Sbjct  2528  YCHADGSQFDS----------SLTPLLLNAVLDVRSFFMEDWWVGREMLENLYAEIVYTP  2577

Query  667   VMC-GGSLYVKPGGTSSGDATTAYANSVFNICQAVTA  702
             ++   G+++ K  G +SG  +T   N++  +     +
Sbjct  2578  ILAPDGTIFKKFRGNNSGQPSTVVDNTLMVVIAMYYS  2614


>sp|P17767|POLG_PPVRA Genome polyprotein OS=Plum pox potyvirus 
(strain Rankovic) OX=12214 PE=1 SV=2
Length=3140

 Score = 47.0 bits (110),  Expect = 0.001, Method: Composition-based stats.
 Identities = 56/308 (18%), Positives = 107/308 (35%), Gaps = 44/308 (14%)

Query  494   IVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALF-------AYTKRNVIPTITQMNLK-  545
             I + L+  A       GK R Y+ ++S +D+++            K+ V     +  L+ 
Sbjct  2410  IFSALNMKAAVGALYSGKKRDYFKNVSDQDKESFVRASCKRLFMGKKGVWNGSLKAELRP  2469

Query  546   YAISAKNRAR--------TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGG  597
                   N+ R        T+ G  +C    N QF+   L            +G +KF GG
Sbjct  2470  KEKVEANKTRSFTAAPIDTLLGGKVCVDDFNNQFYSLNLH-------CPWSVGMTKFRGG  2522

Query  598   WHNMLKTVYSDVENPHLMGWDYPKCDRAM--PNMLRIMASLVLARKHTTCCSLSHRFYRL  655
             W  +L+ +          GW Y   D +    ++   + + VL  +             L
Sbjct  2523  WDKLLRALPE--------GWIYCDADGSQFDSSLSPYLINAVLNIRLAFMEEWDIGEQML  2574

Query  656   ANECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNK  714
             +N   +++   +    G++  K  G +SG  +T   N++  I     + +      D + 
Sbjct  2575  SNLYTEIVYTPIATPDGTIVKKFKGNNSGQPSTVVDNTLMVILAMTYSLLKLGYHPDTHD  2634

Query  715   IADKYVRN------LQHRLYECLYRNRDVDTDFVNEFYAYLRK---HFSMMILSDDAVVC  765
                +Y  N        H  YE +Y         +   Y +  K      +  +S   V+ 
Sbjct  2635  CICRYFVNGDDLVLAVHPAYESIYDELQEHFSQLGLNYTFATKTENKEELWFMSHKGVL-  2693

Query  766   FNSTYASQ  773
             ++  Y  +
Sbjct  2694  YDDMYIPK  2701


>sp|Q90069|POLG_SBMVG Genome polyprotein OS=Soybean mosaic virus 
(strain G2) OX=103931 PE=3 SV=1
Length=3066

 Score = 47.0 bits (110),  Expect = 0.001, Method: Composition-based stats.
 Identities = 48/288 (17%), Positives = 100/288 (35%), Gaps = 46/288 (16%)

Query  436   ELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIV  495
               K  FF  +    +++ D+  +              V+++   FD  +   +     I 
Sbjct  2352  AFKRGFFKYNKPVVLNEVDFQSFERAVAG--------VKLMMMEFDFKECVYVTDPDEIY  2403

Query  496   NNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFA-------YTKRNVIPTITQMNLK---  545
             ++L+  A       GK + Y+  M   D++ L         Y ++ V     +  L+   
Sbjct  2404  DSLNMKAAVGAQYKGKKQDYFSGMDSFDKERLLYLSCERLFYGEKGVWNGSLKAELRPIE  2463

Query  546   YAISAKNRA------RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWH  599
                + K R        T+ G  +C    N QF+   L            +G +KFY GW 
Sbjct  2464  KVQANKTRTFTAAPIDTLLGAKVCVDDFNNQFYSLNLT-------CPWTVGMTKFYRGWD  2516

Query  600   NMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFY----RL  655
              +++++       H  G  +             +  L+L             ++     L
Sbjct  2517  KLMRSLPDGWVYCHADGSQFDS----------SLTPLLLNAVLDVRSFFMEDWWVGREML  2566

Query  656   ANECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNICQAVTA  702
              N  A+++   ++   G+++ K  G +SG  +T   N++  +     +
Sbjct  2567  ENLYAEIVYTPILAPDGTIFKKFRGNNSGQPSTVVDNTLMVVIALYYS  2614


>sp|P29152|POLG_PSBMV Genome polyprotein OS=Pea seed-borne mosaic 
virus (strain DPD1) OX=31736 PE=1 SV=1
Length=3206

 Score = 47.0 bits (110),  Expect = 0.001, Method: Composition-based stats.
 Identities = 43/229 (19%), Positives = 81/229 (35%), Gaps = 34/229 (15%)

Query  488   INANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYT-------KRNVIPTIT  540
             +   + I  +L+ +A       GK + Y++  +  D++ +   +       K+ V     
Sbjct  2507  VTDAEAIFQSLNMNAAVGAMYQGKKKDYFEDFTAADRELIVKQSCERLFLGKKGVWNGSL  2566

Query  541   QMNLK---YAISAKNRA------RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGT  591
             +  L+        K R        T+ G  +C    N  F+   L+           +G 
Sbjct  2567  KAELRPIEKVHENKTRTFTAAPLDTLLGGKVCVDDFNNFFYSCHLR-------GPWTVGI  2619

Query  592   SKFYGGWHNMLKTVYSDVENPHLMGWDYPKCD--RAMPNMLRIMASLVLARKHTTCCSLS  649
             +KFY GW+  L  +          GW Y   D  R   ++   + + VL  +        
Sbjct  2620  TKFYAGWNEFLSKLPD--------GWLYCDADGSRFDSSLTPYLINAVLELRLRFMEEWD  2671

Query  650   HRFYRLANECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNIC  697
                  L N   +++   +    GS+  K  G +SG  +T   N++  I 
Sbjct  2672  AGEQMLKNLYTEIIYTPIATPDGSVIKKTKGNNSGQPSTVVDNTLMVIL  2720


>sp|Q6XW15|POLG_BTMV Genome polyprotein OS=Beet mosaic virus OX=114921 
PE=3 SV=1
Length=3085

 Score = 46.6 bits (109),  Expect = 0.002, Method: Composition-based stats.
 Identities = 53/275 (19%), Positives = 102/275 (37%), Gaps = 40/275 (15%)

Query  454   DYYRYNLP-TMCDIRQLLF---VVEVVDKYFDCYDGGCINANQV--IVNNLDKSAGFPFN  507
             D+ +Y  P T+  +    F   V  V++   D   G C        I ++L+  A     
Sbjct  2365  DFLKYAGPITVGVVNTNSFEDAVASVINMLEDLDYGECAYVTDPDSIFDSLNMKAAVGAL  2424

Query  508   KWGKARLYYDSMSYEDQDALF-------AYTKRNVIPTITQMNLK-YAISAKNRART---  556
               GK + Y++ ++  +++ L           K  V     +  L+      +N+ RT   
Sbjct  2425  YKGKKKEYFEQLNTTEREDLLRLSCERLYEGKMGVWNGSLKAELRPKEKLEQNKTRTFTA  2484

Query  557   -----VAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVEN  611
                  + G  +C    N +F+   LK           +G +KFYGGW+ +L+ +      
Sbjct  2485  APIDTLLGGKVCVDDFNNRFYSLNLK-------GPWSVGMTKFYGGWNELLQKLPD----  2533

Query  612   PHLMGWDYPKCDRAM--PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC  669
                 GW Y   D +    ++   + + V+  +             L N   +++   ++ 
Sbjct  2534  ----GWIYCDADGSQFDSSLTPYLINAVVQIREHFMEDWEIGRTMLRNFYTEIVYTPILT  2589

Query  670   -GGSLYVKPGGTSSGDATTAYANSVFNICQAVTAN  703
               G++  K  G +SG  +T   N++  I     A 
Sbjct  2590  PDGTIVKKFKGNNSGQPSTVVDNTLMVILAMHYAM  2624


>sp|Q84934|POLG_PPVSK Genome polyprotein OS=Plum pox potyvirus 
(strain SK 68) OX=103927 PE=3 SV=1
Length=3140

 Score = 46.2 bits (108),  Expect = 0.002, Method: Composition-based stats.
 Identities = 54/285 (19%), Positives = 99/285 (35%), Gaps = 42/285 (15%)

Query  494   IVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFA-------YTKRNVIPTITQMNLK-  545
             I + L+  A       GK R Y+ + S +D++             K+ V     +  L+ 
Sbjct  2410  IFSALNMKAAVGALYSGKKRDYFKNASEQDKEDFIKASCKRLFMGKKGVWNGSLKAELRP  2469

Query  546   YAISAKNRAR--------TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGG  597
                   N+ R        T+ G  +C    N QF+   L            +G +KF GG
Sbjct  2470  KEKVEANKTRSFTAAPIDTLLGGKVCVDDFNNQFYSLNLH-------CPWSVGMTKFRGG  2522

Query  598   WHNMLKTVYSDVENPHLMGWDYPKCDRAM--PNMLRIMASLVLARKHTTCCSLSHRFYRL  655
             W  +L+ +          GW Y   D +    ++   + + VL  +             L
Sbjct  2523  WDKLLRALPD--------GWIYCDADGSQFDSSLSPYLINAVLNIRLAFMEEWDIGEQML  2574

Query  656   ANECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNK  714
             +N   +++   +    G++  K  G +SG  +T   N++  I     A   +LL    + 
Sbjct  2575  SNLYTEIVYTPIATPDGTIVKKFKGNNSGQPSTVVDNTLMVIL----AMTYSLLKLGYHP  2630

Query  715   IADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILS  759
                + +     R +                 Y  L++HFS + L+
Sbjct  2631  DTHECIC----RYFVNGDDLVLAVHPAYESMYDELQEHFSQLGLN  2671


>sp|P31999|POLG_LMV0 Genome polyprotein OS=Lettuce mosaic virus 
(strain 0 / isolate French) OX=117132 PE=2 SV=3
Length=3255

 Score = 46.2 bits (108),  Expect = 0.002, Method: Composition-based stats.
 Identities = 68/428 (16%), Positives = 139/428 (32%), Gaps = 91/428 (21%)

Query  475   VVDKYFDCYDGGC--INANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYT-  531
             V+ +       GC  +   + I   L+  A       GK R Y++    E+++ +   + 
Sbjct  2554  VIKRLERLGFSGCEYVTDEEAIFQALNMKAAVGALYSGKKRDYFEGYGPEEKENILRESC  2613

Query  532   ---------------KRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLL  576
                            K  + P    M  K  +       T+    +C    N  F+ K +
Sbjct  2614  KRLYTGKFGVWNGSLKSELRPMEKVMANKTRVFTAAPLDTLLAGKVCVDDFNNYFYSKNI  2673

Query  577   KSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAM--PNMLRIMA  634
             +       A   +G +KFYGGW+ +L  +          GW Y   D +    ++   + 
Sbjct  2674  E-------APWTVGMTKFYGGWNELLTKLPD--------GWVYCDADGSQFDSSLSPFLI  2718

Query  635   SLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKP-GGTSSGDATTAYANSV  693
             + VL  +             L N   +++   ++   S  VK   G +SG  +T   N++
Sbjct  2719  NSVLRIRLKFMEDWDLGEQMLKNLYTEIVYTAILTPDSTIVKKFKGNNSGQPSTVVDNTL  2778

Query  694   FNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHF  753
                       V   ++   +K+                         F +E    + K+F
Sbjct  2779  ---------MVVLAMTYTLHKL------------------------GFEDEEQDSMCKYF  2805

Query  754   SMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFC  813
                +  DD ++     + S      +  F+       + F S    +     T+   E  
Sbjct  2806  ---VNGDDLIIAIKPEHESL-----LDQFQ-------HCFKSLGLNYDFNSRTRKKEELW  2850

Query  814   SQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDA--YPLTK  871
                   +K+    +++P  +P RI+     ++          +E   +  I++  Y    
Sbjct  2851  FMSHCGIKKDG--IFIPKLEPERIVS---ILEWDRSDQPVHRLEAICAAMIESWGYDKLT  2905

Query  872   HPNQEYAD  879
             H  +++  
Sbjct  2906  HEIRKFYK  2913


>sp|Q8JV21|POLG_LJUV1 Genome polyprotein OS=Ljunganvirus 1 OX=1001061 
PE=1 SV=1
Length=2253

 Score = 45.8 bits (107),  Expect = 0.002, Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 60/175 (34%), Gaps = 15/175 (9%)

Query  545   KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAAT--RGATVVIGTSKFYGGWHNML  602
             K    A+ + R +   SI   +  R     L ++I  T  +   + +G +  +  W  M+
Sbjct  1955  KKEKIAQGKTRCIEACSIDYVIAYRVVMSSLYEAIYQTPAQELGLAVGMNP-WTDWDPMI  2013

Query  603   KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQV  662
                  +V  P+  G DY   D ++   L      +LA  H    ++      + N    V
Sbjct  2014  -----NVLQPYNYGLDYSSYDGSLSEQLMRYGVEILAYCHEQPEAVMILHEPVINSQHLV  2068

Query  663   LSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIAD  717
             + E+           GG  SG   T   NS+ N+           L  +   I  
Sbjct  2069  MDEIWHVN-------GGMPSGAPCTTVLNSICNLLVCTYLAYEQSLDIEVLPIVY  2116


>sp|P19724|POLG_PRSVW Genome polyprotein (Fragment) OS=Papaya 
ringspot virus (strain W) OX=12207 PE=3 SV=1
Length=675

 Score = 45.4 bits (106),  Expect = 0.002, Method: Composition-based stats.
 Identities = 50/278 (18%), Positives = 97/278 (35%), Gaps = 40/278 (14%)

Query  556  TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM  615
            T+ G  +C    N  F+ K ++           +G +KFY GW   L+  + D       
Sbjct  46   TLLGAKVCVDDFNNWFYSKNME-------CPWTVGMTKFYKGWDEFLR-KFPD-------  90

Query  616  GWDYPKCDRA------MPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC  669
            GW Y   D +       P +L  + S+ L                L N   ++    ++ 
Sbjct  91   GWVYCDADGSQFDSSLTPYLLNAVLSIRLWAMED----WDIGEQMLKNLYGEITYTPILT  146

Query  670  -GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNK------IADKYVRN  722
              G++  K  G +SG  +T   N++  +     A   A   T   +      I    +  
Sbjct  147  PDGTIVKKFKGNNSGQPSTVVDNTLMVLITMYYALRKAGYDTKTQEDMCVFYINGDDLCI  206

Query  723  LQHRLYECLYRNRDVDTDFVNEFYAYLRKHF---SMMILSDDAVV---CFNSTYASQGLV  776
              H  +E +  +       +   Y + ++H    ++  +S   ++    +      + +V
Sbjct  207  AIHPDHEHVLDSFSRSFAELGLKYDFTQRHRNKQNLWFMSHRGILIDDIYIPKLEPERIV  266

Query  777  ASIKNFKSVL--YYQNNVFMSEAKCWTETDLTKGPHEF  812
            A ++  KS L  +    +  +  + W   DLT     F
Sbjct  267  AILEWDKSKLPEHRLEAITAAMIESWGYGDLTHQIRRF  304


>sp|P36286|POLG_SMSV1 Genome polyprotein OS=San Miguel sea lion 
virus serotype 1 OX=36406 GN=ORF1 PE=3 SV=3
Length=1879

 Score = 45.8 bits (107),  Expect = 0.002, Method: Composition-based stats.
 Identities = 32/178 (18%), Positives = 66/178 (37%), Gaps = 12/178 (7%)

Query  553   RARTVAGVSICSTMTNRQFHQKLLKSIAATRG-ATVVIGTSKFYGGWHNMLKTVYSDVEN  611
             + R + G  +  +   R   +++ +SI A      + +G +       +  K +     +
Sbjct  1533  KRRLIWGCDVGVSTVCRAAFKRVSESIMANHALGFIQVGINMDGPAVEDPFKRLERPKHD  1592

Query  612   PHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMV-MCG  670
              + +  DY K D   P  +   +  +L          + +   + + CA + S  + +  
Sbjct  1593  RYCV--DYSKWDSTQPPKVTSQSIDILRH-------FTDKSPIVDSACATLKSNPIGIFN  1643

Query  671   GSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLY  728
             G  +   GG  SG   T+  NS+ N C  V + V   L   G ++      ++    Y
Sbjct  1644  GVAFKVAGGLPSGMPLTSIINSL-NHCLMVGSAVVKALEDSGVQVTWNIFDSMDLFTY  1700


>sp|Q02963|POLG_PVYHU Genome polyprotein OS=Potato virus Y (strain 
Hungarian) OX=31739 PE=3 SV=1
Length=3061

 Score = 45.4 bits (106),  Expect = 0.003, Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 91/258 (35%), Gaps = 26/258 (10%)

Query  454   DYYRYNLP---TMCDIRQLLFVVEVVDKYFDCY---DGGCINANQVIVNNLDKSAGFPFN  507
             D  +Y+ P    + D       +  V  Y   +       I   Q I   L+  A     
Sbjct  2347  DIMKYSKPIDVGIVDCDAFEEAINRVIIYLQVHGFQKCNYITDEQEIFKALNMKAAVGAM  2406

Query  508   KWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQM---NLKYAISAK-----NRARTVAG  559
               GK + Y++  +  D++ +   +   +      +   +LK  +  K     N+ RT   
Sbjct  2407  YGGKKKDYFEHFTEADKEEIVMQSCPRLYKGSLGIWNGSLKAELRCKEKILANKTRTFTA  2466

Query  560   VSICSTMTNRQFHQKLLKSIAATRGATVV--IGTSKFYGGWHNMLKTVYSDVENPHLMGW  617
               + + +  +            ++       +G +KFYGGW  +L+ +    EN      
Sbjct  2467  APLDTLLGGKVCVDDFNNQF-YSKNIECCWTVGMTKFYGGWDRLLRRLP---ENWVYCDA  2522

Query  618   DYPKCDRA-MPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC-GGSLYV  675
             D  + D +  P ++      VL  + T           L N   +++   +    G++  
Sbjct  2523  DGSQFDSSLTPYLINA----VLIIRSTYMEDWDLGLQMLRNLYTEIIYTPISTPDGTIVK  2578

Query  676   KPGGTSSGDATTAYANSV  693
             K  G +SG  +T   NS+
Sbjct  2579  KFRGNNSGQPSTVVDNSL  2596


>sp|Q9WAL8|POL1_SDVS5 RNA1 polyprotein OS=Satsuma dwarf virus 
(isolate Satsuma mandarin/Japan/S-58/1977) OX=650481 PE=3 SV=1
Length=2081

 Score = 44.7 bits (104),  Expect = 0.005, Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 52/154 (34%), Gaps = 7/154 (5%)

Query  544   LKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLK  603
              K  +  K R   +    I   +  R     +   + A       +G + +   W  +L 
Sbjct  1615  KKVRVQPKTRIFEILPFQINI-IIRRYLMFWMQLLMVAHDELPSKVGINVYSESWDRLLG  1673

Query  604   TVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL  663
                      H  G DY   D + P   R++   ++ + +              N    VL
Sbjct  1674  RHTR--LANHFTG-DYSGFDTSTP---RVLVYAIIDKINELADDGEVNQRTRRNIIRFVL  1727

Query  664   SEMVMCGGSLYVKPGGTSSGDATTAYANSVFNIC  697
             +  ++  G LY   GGT SG A T   NSV N  
Sbjct  1728  NRYLISDGVLYEIHGGTPSGFAPTVMINSVVNEF  1761


>sp|O11436|POLG_RGMVD Genome polyprotein OS=Ryegrass mosaic virus 
(isolate Denmark/Danish) OX=652106 PE=1 SV=1
Length=3086

 Score = 44.3 bits (103),  Expect = 0.007, Method: Composition-based stats.
 Identities = 50/270 (19%), Positives = 99/270 (37%), Gaps = 26/270 (10%)

Query  445   DGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGC-----INANQVIVNNLD  499
             +  A + D   Y   +P + ++    F   V D Y+   D G      I     I ++++
Sbjct  2305  NREAFVKDITKYDTEIP-IGNLSITDFENAVEDTYYILKDSGIEQCNYITDAIPIFDSMN  2363

Query  500   KSAGFPFNKWGKARLYYDSMSYEDQDALF---AYTKRNVIPTITQMNLKYAISAK-----  551
               A       GK + Y+++ + + +  +        R     I   +LK  + +K     
Sbjct  2364  MKAATGALYGGKKKDYFENYTDDMKQNILKESYIRLREGKMGIWNGSLKAELRSKEKVEA  2423

Query  552   NRARTVAGVSICSTMTNRQFHQKLLKSI-AATRGATVVIGTSKFYGGWHNMLKTVYSDVE  610
             N+ R      + + +  +           AA       +G +KF+G W++ L  +     
Sbjct  2424  NKTRVFTAAPLDTLLAGKGCVDDFNNQFYAAHLKGPWTVGITKFFGRWNDFLSELPP---  2480

Query  611   NPHLMGWDYPKCD--RAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVM  668
                  GWDY   D  R   ++   + + VL  +     + +     L N   +++   + 
Sbjct  2481  -----GWDYFDADGSRFDSSLTPFLLNAVLNIRKKFMINWAFGQRCLGNLYTEIIYTPIA  2535

Query  669   C-GGSLYVKPGGTSSGDATTAYANSVFNIC  697
                GS+  K  G +SG  +T   N++  I 
Sbjct  2536  TPDGSVVKKMRGNNSGQPSTVVDNTIMVII  2565


>sp|Q9DUN3|POLG_VESVA Genome polyprotein OS=Vesicular exanthema 
of swine virus serotype A48 (isolate Swine/United States/A48/1948) 
OX=85617 GN=ORF1 PE=3 SV=1
Length=1881

 Score = 43.9 bits (102),  Expect = 0.008, Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 66/178 (37%), Gaps = 12/178 (7%)

Query  553   RARTVAGVSICSTMTNRQFHQKLLKSIAATRG-ATVVIGTSKFYGGWHNMLKTVYSDVEN  611
             + R + G  +  +       +++ +SI A      + +G +       ++ K +     +
Sbjct  1535  KRRLIWGCDVGVSTVCAAAFKRVSESIMANHALGFIQVGINMDGPAVEDLFKRLERPKHD  1594

Query  612   PHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMV-MCG  670
              + +  DY K D   P  +   +  +L          + +   + + CA + S  + +  
Sbjct  1595  RYCV--DYSKWDSTQPPKVTSQSIDILRH-------FTDKSPIVDSACATLKSNPIGIFN  1645

Query  671   GSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLY  728
             G  +   GG  SG   T+  NS+ N C  V + V   L   G ++      ++    Y
Sbjct  1646  GVAFKVAGGLPSGMPLTSIINSL-NHCLMVGSAVVKALEDSGVRVTWNIFDSMDLFTY  1702


>sp|P04517|POLG_TEV Genome polyprotein OS=Tobacco etch virus OX=12227 
PE=1 SV=1
Length=3054

 Score = 44.3 bits (103),  Expect = 0.008, Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 79/222 (36%), Gaps = 20/222 (9%)

Query  488   INANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALF-------AYTKRNVIPTIT  540
             I   + I + L+  A       GK +     ++ ++Q+A+           K  +     
Sbjct  2391  ITDPEEIFSALNMKAAMGALYKGKKKEALSELTLDEQEAMLKASCLRLYTGKLGIWNGSL  2450

Query  541   QMNLK-YAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAA-TRGATVVIGTSKFYGGW  598
             +  L+       N+ RT     I + +  +                A   +G +KFY GW
Sbjct  2451  KAELRPIEKVENNKTRTFTAAPIDTLLAGKVCVDDFNNQFYDLNIKAPWTVGMTKFYQGW  2510

Query  599   HNMLKTVYSDVENPHLMGWDYPKCDRAM--PNMLRIMASLVLARKHTTCCSLSHRFYRLA  656
             + +++ + S        GW Y   D +    ++   + + VL  +             L 
Sbjct  2511  NELMEALPS--------GWVYCDADGSQFDSSLTPFLINAVLKVRLAFMEEWDIGEQMLR  2562

Query  657   NECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNIC  697
             N   +++   ++   G++  K  G +SG  +T   N++  I 
Sbjct  2563  NLYTEIVYTPILTPDGTIIKKHKGNNSGQPSTVVDNTLMVII  2604


>sp|E5D8F2|POLG_HRV15 Genome polyprotein OS=Human rhinovirus C 
(strain C15) OX=1418033 PE=1 SV=1
Length=2153

 Score = 43.9 bits (102),  Expect = 0.009, Method: Composition-based stats.
 Identities = 39/200 (20%), Positives = 67/200 (34%), Gaps = 20/200 (10%)

Query  501   SAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRN--VIPTITQMNLKYAIS---AKNRAR  555
             SAGFP+   G  +    +   +D   L     +    +P +T +  +        K + R
Sbjct  1808  SAGFPYVTMGIKKKDIVNKVTKDVTKLQEMIDKYGIDLPYVTYLKDELRAPEKIKKGKTR  1867

Query  556   TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM  615
              +   SI  T   R     L     A  G   V+  S            +Y+ ++   L+
Sbjct  1868  AIEAASINDTTHFRMVFGNLFSVFHANPG---VLTGSAVGCNPDVFWSQMYACMDG-ELL  1923

Query  616   GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV  675
              +DY   D ++  +     +  L +         H   RL N          +    +Y 
Sbjct  1924  AFDYTNYDGSLHPI--WFKA--LGKVLDNLGFPGHLVNRLCNTTH-------IFKNLIYT  1972

Query  676   KPGGTSSGDATTAYANSVFN  695
               GG  SG   T+  N++ N
Sbjct  1973  VEGGMPSGICGTSIFNTMIN  1992


>sp|O73556|POLG_HPE2W Genome polyprotein OS=Human parechovirus 
2 (strain Williamson) OX=122962 PE=3 SV=1
Length=2179

 Score = 43.5 bits (101),  Expect = 0.011, Method: Composition-based stats.
 Identities = 47/249 (19%), Positives = 80/249 (32%), Gaps = 35/249 (14%)

Query  488   INANQVIVNNLDKSAGFPFNKWGKARLYYDSMSY----EDQDALFAYTKRNVIPTITQMN  543
             +  + V   +L  SAG+ F K G  +     +         + L      N++    Q+ 
Sbjct  1810  LGTSHVNSMDLSTSAGYSFVKSGYKKKDLICLEPFSVSPMLEKLVQEKFHNLLKG-NQIT  1868

Query  544   LKYAISAKN-----------RARTVAGVSICSTMTNRQFHQKLLKSIAAT----RGATVV  588
               +    K+           + R +    I   +  R    ++   I  T     G  V 
Sbjct  1869  TIFNTCLKDELRKLDKIATGKTRCIEACEIDYCIVYRMIMMEIYDKIYQTPCYYSGLAVG  1928

Query  589   IGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSL  648
             I     Y  WH M+  +     N +    DY + D ++ +ML   A  VLA  H +   +
Sbjct  1929  INP---YRDWHFMINAL-----NDYNYEMDYSQYDGSLSSMLLWEAVQVLAYCHDSPDLV  1980

Query  649   SHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALL  708
                   + +    V +E  +         GG  SG   T   NS+ N+   +        
Sbjct  1981  MQLHKPVIDSDHVVFNERWLIH-------GGMPSGSPCTTVLNSLCNLMMCIYTTNLISP  2033

Query  709   STDGNKIAD  717
               D   I  
Sbjct  2034  GIDCLPIVY  2042


>sp|Q66474|POLG_EC06C Genome polyprotein OS=Echovirus 6 (strain 
Charles) OX=103913 PE=1 SV=3
Length=2191

 Score = 43.5 bits (101),  Expect = 0.011, Method: Composition-based stats.
 Identities = 39/200 (20%), Positives = 71/200 (36%), Gaps = 17/200 (9%)

Query  501   SAGFPFNKWGKARLYYDSMSYEDQDAL--FAYTKRNVIPTITQMNLKYAIS---AKNRAR  555
             SAG+P+   G  +    S    D   L          +P +T +  +   +   AK ++R
Sbjct  1844  SAGYPYVALGIKKRDILSKKTRDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKGKSR  1903

Query  556   TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM  615
              +   S+  ++  RQ    L K+     G    I T    G   ++  +    + + HL+
Sbjct  1904  LIEASSLNDSVAMRQTFGNLYKAFHQNPG----IVTGSAVGCDPDLFWSKIPVMLDGHLI  1959

Query  616   GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV  675
              +DY   D ++  +    A L L  +          +         +  +        Y 
Sbjct  1960  AFDYSGYDASLSPV--WFACLKLLLEKLGYTHKETNYIDYLCNSHHLYRD------KHYF  2011

Query  676   KPGGTSSGDATTAYANSVFN  695
               GG  SG + T+  NS+ N
Sbjct  2012  VRGGMPSGCSGTSIFNSMIN  2031


>sp|Q66578|POLG_HPE1H Genome polyprotein OS=Human parechovirus 
1 (strain Harris) OX=103911 PE=1 SV=1
Length=2180

 Score = 43.1 bits (100),  Expect = 0.016, Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 80/249 (32%), Gaps = 35/249 (14%)

Query  488   INANQVIVNNLDKSAGFPFNKWGKARLYYDSMSY----EDQDALFAYTKRNVIPTITQMN  543
             +  + V   +L  SAG+ F K G  +     +         + L      N++    Q+ 
Sbjct  1811  LGTSHVNSMDLSTSAGYSFVKSGYKKKDLICLEPFSVAPLLERLVQDKFHNLLKG-NQIT  1869

Query  544   LKYAISAKN-----------RARTVAGVSICSTMTNRQFHQKLLKSIAAT----RGATVV  588
               +    K+           + R +    +   +  R    ++   I  T     G  V 
Sbjct  1870  TTFNTCLKDELRKLDKIASGKTRCIEACEVDYCIVYRMIMMEIYDKIYQTPCYYSGLAVG  1929

Query  589   IGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSL  648
             I     Y  WH M+  +     N +    DY + D ++ +ML   A  VLA  H +   +
Sbjct  1930  INP---YKDWHFMINAL-----NDYNYEMDYSQYDGSLSSMLLWEAVEVLAYCHDSPDLV  1981

Query  649   SHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALL  708
                   + +    V +E  +         GG  SG   T   NS+ N+   +        
Sbjct  1982  MQLHKPVIDSDHVVFNERWLIH-------GGMPSGSPCTTVLNSLCNLMMCIYTTNLISP  2034

Query  709   STDGNKIAD  717
               D   I  
Sbjct  2035  GIDCLPIVY  2043


>sp|Q96725|POLG_EBHSG Genome polyprotein OS=European brown hare 
syndrome virus (strain GD) OX=316979 GN=ORF1 PE=3 SV=1
Length=2334

 Score = 43.1 bits (100),  Expect = 0.017, Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 83/250 (33%), Gaps = 25/250 (10%)

Query  550   AKNRARTVAGVSICSTM-TNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSD  608
              + + R + G ++   +     FH    K     R   + +G          M+  + S 
Sbjct  1427  KEGKKRLLWGCNVGVALCAAAVFHNLCFKLKTVARFGPIAVGIDMTSRDVDVMITQLTSK  1486

Query  609   VENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVM  668
               +   +  DY K D  M   +  +A  +LA     CC  +     +       L   V+
Sbjct  1487  AGDFLCL--DYSKWDSTMSPCVVRLAIDILAD----CCEQTELTKSVVLTLKS-LPMTVL  1539

Query  669   CGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLY  728
                 +  K  G  SG   T+  NS+ +     +A V       G   ++ Y  +    +Y
Sbjct  1540  DAMIVPTKR-GLPSGMPFTSVINSICHWLLW-SAAVYKACDEIGLFCSNLY-EDAPFFVY  1596

Query  729   --ECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVL  786
               + +Y    +    V+   A L        L D  +   + T A +     +   K + 
Sbjct  1597  GDDGVY---AMTPMMVSLLPAILDN------LRDYGL---SPTAADKTEFIDVCPLKDIS  1644

Query  787   YYQNNVFMSE  796
             + +    MSE
Sbjct  1645  FLKRKFVMSE  1654


>sp|Q9YID8|POLG_HPEV5 Genome polyprotein OS=Human parechovirus 
5 (strain CT86-6760) OX=122961 PE=3 SV=1
Length=2188

 Score = 42.7 bits (99),  Expect = 0.020, Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 69/210 (33%), Gaps = 26/210 (12%)

Query  512   ARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQF  571
                +++ +       +F    ++ +  + ++       A  + R +    +   +  R  
Sbjct  1864  QDKFHNLLKGNQITTIFNTCLKDELRKLDKI-------AAGKTRCIEACEVDYCIVYRMI  1916

Query  572   HQKLLKSIAAT----RGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMP  627
               ++   I  T     G  V I     Y  WH M+  +     N +    DY + D ++ 
Sbjct  1917  MMEIYDKIYQTPCYYSGLAVGINP---YKDWHFMINAL-----NDYNYEMDYSQYDGSLS  1968

Query  628   NMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATT  687
             +ML   A  VLA  H +   +      + +    V +E  +         GG  SG   T
Sbjct  1969  SMLLWEAVEVLAYCHDSPDLVMQLHKPVIDSDHVVFNERWLIH-------GGMPSGSPCT  2021

Query  688   AYANSVFNICQAVTANVNALLSTDGNKIAD  717
                NS+ N+   +          D   I  
Sbjct  2022  TVLNSLCNLMMCIYTTNLISPGVDCLPIVY  2051


>sp|O41174|POLG_PEV9U Genome polyprotein OS=Porcine enterovirus 
9 (strain UKG/410/73) OX=64141 PE=1 SV=3
Length=2168

 Score = 42.7 bits (99),  Expect = 0.021, Method: Composition-based stats.
 Identities = 38/203 (19%), Positives = 72/203 (35%), Gaps = 24/203 (12%)

Query  501   SAGFPFNKWGKARLYYDSMSYEDQD----ALFAYTKRNVIPTITQM---NLKYAISAKNR  553
             SAG+P+   G  +   D ++ E +D              +P +T +           K +
Sbjct  1822  SAGYPYVTMGIKKR--DILNKETRDVKKMQECIDKYGLNLPMVTYIKDELRSKEKVKKGK  1879

Query  554   ARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPH  613
             +R +   S+  ++  R +   L K+     G           G   +   +    + +  
Sbjct  1880  SRLIEASSLNDSVAMRCYFGNLYKAFHQNPGTLTGCAV----GCDPDTFWSKIPVMMDGE  1935

Query  614   LMGWDYPKCDRAM-PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGS  672
             L G+DY   D ++ P M + +  +VL +            + + N C        +    
Sbjct  1936  LFGFDYTAYDASLSPLMFQAL-QMVLEKI-----GFGEGKHFIDNLCYS----HHLFRDK  1985

Query  673   LYVKPGGTSSGDATTAYANSVFN  695
              Y   GG  SG + T+  NS+ N
Sbjct  1986  YYFVKGGMPSGCSGTSIFNSMIN  2008


>sp|P18247|POLG_PVYN Genome polyprotein OS=Potato virus Y (strain 
N) OX=12219 PE=1 SV=2
Length=3063

 Score = 42.7 bits (99),  Expect = 0.021, Method: Composition-based stats.
 Identities = 29/146 (20%), Positives = 55/146 (38%), Gaps = 12/146 (8%)

Query  552   NRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVV--IGTSKFYGGWHNMLKTVYSDV  609
             N+ RT     + + +  +            ++       +G +KFYGGW  +L+ +    
Sbjct  2461  NKTRTFTAAPLDTLLGGKVCVDDFNNQF-YSKNIECCWTVGMTKFYGGWDKLLRRLP---  2516

Query  610   ENPHLMGWDYPKCDRA-MPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVM  668
             EN      D  + D +  P ++      VL  + T           L N   +++   + 
Sbjct  2517  ENWVYCDADGSQFDSSLTPYLINA----VLTIRSTYMEDWDVGLQMLRNLYTEIVYTPIS  2572

Query  669   C-GGSLYVKPGGTSSGDATTAYANSV  693
                G++  K  G +SG  +T   NS+
Sbjct  2573  TPDGTIVKKFRGNNSGQPSTVVDNSL  2598


>sp|Q66849|POLG_EC09H Genome polyprotein OS=Echovirus 9 (strain 
Hill) OX=103915 PE=3 SV=3
Length=2193

 Score = 42.3 bits (98),  Expect = 0.026, Method: Composition-based stats.
 Identities = 39/200 (20%), Positives = 71/200 (36%), Gaps = 17/200 (9%)

Query  501   SAGFPFNKWGKARLYYDSMSYEDQDAL--FAYTKRNVIPTITQMNLKYAIS---AKNRAR  555
             SAG+P+   G  +    S    D   L          +P +T +  +   +   AK ++R
Sbjct  1846  SAGYPYVALGIKKRDILSKKTRDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKGKSR  1905

Query  556   TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM  615
              +   S+  ++  RQ    L K+     G    I T    G   ++  +    + + HL+
Sbjct  1906  LIEASSLNDSVAMRQTFGNLYKTFHLNPG----IVTGSASGCDPDLFWSKIPVMLDGHLI  1961

Query  616   GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV  675
              +DY   D ++  +    A L L  +          +         +  +        Y 
Sbjct  1962  AFDYSGYDASLSPV--WFACLKLLLEKLGYSHKETNYIDYLCNSHHLYRD------KHYF  2013

Query  676   KPGGTSSGDATTAYANSVFN  695
               GG  SG + T+  NS+ N
Sbjct  2014  VRGGMPSGCSGTSIFNSMIN  2033


>sp|P21404|POLG_CXA9 Genome polyprotein OS=Coxsackievirus A9 (strain 
Griggs) OX=12068 PE=1 SV=4
Length=2201

 Score = 42.3 bits (98),  Expect = 0.028, Method: Composition-based stats.
 Identities = 41/200 (21%), Positives = 71/200 (36%), Gaps = 17/200 (9%)

Query  501   SAGFPFNKWGKARLYYDSMSYEDQDAL--FAYTKRNVIPTITQMNLKYAIS---AKNRAR  555
             SAG+P+   G  +    S    D   L          +P IT +  +   +   AK ++R
Sbjct  1854  SAGYPYVALGIKKRDILSKKTRDLTKLKECMDKYGLNLPMITYVKDQLRSAEKVAKGKSR  1913

Query  556   TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM  615
              +   S+  ++  RQ    L K+     G    I T    G   ++  +    + N HL+
Sbjct  1914  LIEASSLNDSVAMRQTFGNLYKTFHLNPG----IVTGSAVGCDPDLFWSKIPVMLNGHLI  1969

Query  616   GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV  675
              +DY   D ++  +    A L L  +          +         +  +        Y 
Sbjct  1970  AFDYSGYDASLSPV--WFACLKLLLEKLGYSHKETNYIDYLCNSHHLYRD------KHYF  2021

Query  676   KPGGTSSGDATTAYANSVFN  695
               GG  SG + T+  NS+ N
Sbjct  2022  VRGGMPSGCSGTSIFNSMIN  2041


>sp|Q9WN78|POLG_EC30B Genome polyprotein OS=Echovirus 30 (strain 
Bastianni) OX=176284 PE=1 SV=3
Length=2194

 Score = 42.3 bits (98),  Expect = 0.028, Method: Composition-based stats.
 Identities = 39/200 (20%), Positives = 72/200 (36%), Gaps = 17/200 (9%)

Query  501   SAGFPFNKWGKARLYYDSMSYEDQDAL--FAYTKRNVIPTITQMNLKYAIS---AKNRAR  555
             SAG+P+   G  +    S   +D   L          +P +T +  +   +   AK ++R
Sbjct  1847  SAGYPYVALGIKKRDILSKKTKDLAKLKECMDKYGLNLPMVTYVKDELRSAEKVAKGKSR  1906

Query  556   TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM  615
              +   S+  ++  RQ    L K+     G    I T    G   ++  +    + + HL+
Sbjct  1907  LIEASSLNDSVAMRQTFGNLYKTFHMNPG----IVTGSAVGCDPDLFWSKIPVMLDGHLI  1962

Query  616   GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV  675
              +DY   D ++  +    A L L  +          +         +  +        Y 
Sbjct  1963  AFDYSGYDASLSPV--WFACLKLLLEKLGYSHKETNYIDYLCNSHHLYRD------KHYF  2014

Query  676   KPGGTSSGDATTAYANSVFN  695
               GG  SG + T+  NS+ N
Sbjct  2015  VRGGMPSGCSGTSIFNSMIN  2034


>sp|Q76L40|POL1_BBWVS RNA1 polyprotein OS=Broad bean wilt virus 
1 (strain Spinach/United States/ATCC PV-132/1963) OX=649895 
GN=RNA1 PE=3 SV=1
Length=1842

 Score = 42.0 bits (97),  Expect = 0.032, Method: Composition-based stats.
 Identities = 28/158 (18%), Positives = 51/158 (32%), Gaps = 8/158 (5%)

Query  551   KNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVE  610
             K+R  TV  +S       ++F   +   +         +G + +   W  +   +    +
Sbjct  1359  KSRLFTVLPMSYNLA-IRKKFLNFVRFIMKRRDVLPCQVGINPYSRQWGKVADRLLE--K  1415

Query  611   NPHLMGWDYPKCDRAMPNMLRI-MASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC  669
                ++  DY + D  +P  + + +A +       T          +   C    S   +C
Sbjct  1416  GNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGETGAEREQTKNLMLACC----SRYAIC  1471

Query  670   GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNAL  707
             G  LY    G  SG   T   NS+ N      A     
Sbjct  1472  GRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCF  1509


>sp|Q9QL88|POLG_CXB6S Genome polyprotein OS=Coxsackievirus B6 
(strain Schmitt) OX=231474 PE=1 SV=4
Length=2184

 Score = 42.0 bits (97),  Expect = 0.033, Method: Composition-based stats.
 Identities = 39/200 (20%), Positives = 72/200 (36%), Gaps = 17/200 (9%)

Query  501   SAGFPFNKWGKARLYYDSMSYEDQDAL--FAYTKRNVIPTITQMNLKYAIS---AKNRAR  555
             SAG+P+   G  +    S   +D   L          +P +T +  +   +   AK ++R
Sbjct  1837  SAGYPYVALGIKKRDILSKKSKDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKGKSR  1896

Query  556   TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM  615
              +   S+  ++  RQ    L K+     G    I T    G   ++  +    + + HL+
Sbjct  1897  LIEASSLNDSVAMRQTFGNLYKTFHLNPG----IVTGSAVGCDPDLFWSKIPVMLDGHLI  1952

Query  616   GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV  675
              +DY   D ++  +    A L L  +          +         +  +        Y 
Sbjct  1953  AFDYSGYDASLSPV--WFACLKLLLEKLGYTHKETNYIDYLCNSHHLYRD------KHYF  2004

Query  676   KPGGTSSGDATTAYANSVFN  695
               GG  SG + T+  NS+ N
Sbjct  2005  VRGGMPSGCSGTSIFNSMIN  2024


>sp|Q86117|POLG_RHDVS Genome polyprotein OS=Rabbit hemorrhagic 
disease virus (strain SD) OX=314535 GN=ORF1 PE=3 SV=1
Length=2344

 Score = 42.0 bits (97),  Expect = 0.034, Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 9/149 (6%)

Query  571   FHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNML  630
             FH    K     R   + +G          ++  + S   +   +  DY K D  M   +
Sbjct  1456  FHNICYKLKMVARFGPIAVGVDMTSRDVDVIINNLTSKASDFLCL--DYSKWDSTMSPCV  1513

Query  631   RIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYA  690
               +A  +LA     CC  +     +          M +    +     G  SG   T+  
Sbjct  1514  VRLAIDILAD----CCEQTELTKSVVLTLKS--HPMTILDAMIVQTKRGLPSGMPFTSVI  1567

Query  691   NSVFNICQAVTANVNALLSTDGNKIADKY  719
             NS+ +     +A V    +  G   ++ Y
Sbjct  1568  NSICHWLLW-SAAVYKSCAEIGLHCSNLY  1595


>sp|P27410|POLG_RHDVF Genome polyprotein OS=Rabbit hemorrhagic 
disease virus (strain Rabbit/Germany/FRG/1989) OX=314536 GN=ORF1 
PE=1 SV=1
Length=2344

 Score = 42.0 bits (97),  Expect = 0.034, Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 9/149 (6%)

Query  571   FHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNML  630
             FH    K     R   + +G          ++  + S   +   +  DY K D  M   +
Sbjct  1456  FHNICYKLKMVARFGPIAVGVDMTSRDVDVIINNLTSKASDFLCL--DYSKWDSTMSPCV  1513

Query  631   RIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYA  690
               +A  +LA     CC  +     +          M +    +     G  SG   T+  
Sbjct  1514  VRLAIDILAD----CCEQTELTKSVVLTLKS--HPMTILDAMIVQTKRGLPSGMPFTSVI  1567

Query  691   NSVFNICQAVTANVNALLSTDGNKIADKY  719
             NS+ +     +A V    +  G   ++ Y
Sbjct  1568  NSICHWLLW-SAAVYKSCAEIGLHCSNLY  1595


>sp|Q89273|POLG_RHDVB Genome polyprotein OS=Rabbit hemorrhagic 
disease virus (strain BS89) OX=314537 GN=ORF1 PE=1 SV=1
Length=2344

 Score = 42.0 bits (97),  Expect = 0.034, Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 9/149 (6%)

Query  571   FHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNML  630
             FH    K     R   + +G          ++  + S   +   +  DY K D  M   +
Sbjct  1456  FHNICYKLKMVARFGPIAVGVDMTSRDVDVIINNLTSKASDFLCL--DYSKWDSTMSPCV  1513

Query  631   RIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYA  690
               +A  +LA     CC  +     +          M +    +     G  SG   T+  
Sbjct  1514  VRLAIDILAD----CCEQTELTKSVVLTLKS--HPMTILDAMIVQTKRGLPSGMPFTSVI  1567

Query  691   NSVFNICQAVTANVNALLSTDGNKIADKY  719
             NS+ +     +A V    +  G   ++ Y
Sbjct  1568  NSICHWLLW-SAAVYKSCAEIGLHCSNLY  1595


>sp|Q86119|POLG_RHDVA Genome polyprotein OS=Rabbit hemorrhagic 
disease virus (strain AST89) OX=314538 GN=ORF1 PE=1 SV=2
Length=2344

 Score = 42.0 bits (97),  Expect = 0.034, Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 9/149 (6%)

Query  571   FHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNML  630
             FH    K     R   + +G          ++  + S   +   +  DY K D  M   +
Sbjct  1456  FHNICYKLKMVARFGPIAVGVDMTSRDVDVIINNLTSKASDFLCL--DYSKWDSTMSPCV  1513

Query  631   RIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYA  690
               +A  +LA     CC  +     +          M +    +     G  SG   T+  
Sbjct  1514  VRLAIDILAD----CCEQTELTKSVVLTLKS--HPMTILDAMIVQTKRGLPSGMPFTSVI  1567

Query  691   NSVFNICQAVTANVNALLSTDGNKIADKY  719
             NS+ +     +A V    +  G   ++ Y
Sbjct  1568  NSICHWLLW-SAAVYKSCAEIGLHCSNLY  1595


>sp|Q65900|POLG_CX16G Genome polyprotein OS=Coxsackievirus A16 
(strain G-10) OX=69159 PE=1 SV=3
Length=2193

 Score = 42.0 bits (97),  Expect = 0.035, Method: Composition-based stats.
 Identities = 42/238 (18%), Positives = 78/238 (33%), Gaps = 17/238 (7%)

Query  484   DGGCINANQVIVNNLDKSAGFPFNKWG-KARLYYDSMSYEDQDALFAYTKRNV-IPTITQ  541
             +  C     +   +L  SAG+P++  G K R   D  + +     F   K  + +P  T 
Sbjct  1829  EEACYGTENLEAIDLHTSAGYPYSALGIKKRDILDPTTRDVSKMKFYMDKYGLDLPYSTY  1888

Query  542   MNLKYA---ISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGW  598
             +  +        K ++R +   S+  ++  R     L ++  A  G    I  S      
Sbjct  1889  VKDELRSIDKIKKGKSRLIEASSLNDSVYLRMAFGHLYETFHANPGT---ITGSAVGCNP  1945

Query  599   HNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANE  658
                   +   +    L  +DY   D ++  +     +L L  +       +       N 
Sbjct  1946  DTFWSKLPILLPGS-LFAFDYSGYDASLSPV--WFRALELVLREVGYSEEAVSLIEGINH  2002

Query  659   CAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA  716
                V      C        GG  SG + T+  NS+ N     T  +      D +++ 
Sbjct  2003  THHVYRNKTYCV------LGGMPSGCSGTSIFNSMINNIIIRTLLIKTFKGIDLDELN  2054


>sp|P08291|POLG_CXB1J Genome polyprotein OS=Coxsackievirus B1 
(strain Japan) OX=103902 PE=3 SV=3
Length=2182

 Score = 42.0 bits (97),  Expect = 0.038, Method: Composition-based stats.
 Identities = 39/200 (20%), Positives = 71/200 (36%), Gaps = 17/200 (9%)

Query  501   SAGFPFNKWGKARLYYDSMSYEDQDAL--FAYTKRNVIPTITQMNLKYAIS---AKNRAR  555
             SAG+P+   G  +    S    D   L          +P +T +  +   +   AK ++R
Sbjct  1835  SAGYPYVALGIKKRDILSKKTRDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKGKSR  1894

Query  556   TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM  615
              +   S+  ++  RQ    L K+     G    I T    G   ++  +    + + HL+
Sbjct  1895  LIEASSLNDSVAMRQTFGNLYKTFHLNPG----IVTGSAVGCDPDLFWSKIPVMLDGHLV  1950

Query  616   GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV  675
              +DY   D ++  +    A L L  +          +         +  +        Y 
Sbjct  1951  AFDYSGYDASLSPV--WFACLKLLLEKLGYSHKETNYIDYLCNSHHLYRD------KHYF  2002

Query  676   KPGGTSSGDATTAYANSVFN  695
               GG  SG + T+  NS+ N
Sbjct  2003  VRGGMPSGCSGTSIFNSMIN  2022


>sp|Q8V736|POLG_CACV4 Genome polyprotein OS=Canine calicivirus 
(strain 48) OX=292348 GN=ORF1 PE=3 SV=1
Length=1929

 Score = 42.0 bits (97),  Expect = 0.039, Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 87/233 (37%), Gaps = 26/233 (11%)

Query  531   TKRNVIPTITQMNLKYAISAKNRA-----RTVAGVSICSTMTNRQFHQKLLKSIAATRG-  584
             T+   IP   Q+ LK  +  K++      R + G  +   +      +++  +I A    
Sbjct  1558  TQGVPIPHEYQLGLKDELRPKDKIAVGKRRLIWGCDVGVAVVAASAFKEVSSAIMAMSEF  1617

Query  585   ATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMP-NMLRIMASLVLARKHT  643
               + +G +        + K +Y      H    DY K D   P N+ R+   L+   +H 
Sbjct  1618  DFIQVGINMDGTAVETLYKRLY--TPGTHRYCVDYSKWDSTQPPNVTRMSLELL---RHF  1672

Query  644   TCCSLSHRFYRLANECAQVLSEMV--MCGGSLYVKPGGTSSGDATTAYANSVFNICQAVT  701
             T  S       + +     LS     + GG  +   GG  SG   T+  NS+ N C  V 
Sbjct  1673  TDKSP------VVDSAVATLSSPSIAVFGGVSFKTNGGLPSGMPLTSILNSL-NHCLLVG  1725

Query  702   ANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFS  754
             + +  +L + G  +       +   L+        +  +FV   ++ + + FS
Sbjct  1726  SAIIQVLESKGVDVNWNIYDTID--LFTYGDDGVYIVPNFV---HSVMPEVFS  1773


>sp|P89201|POLG_SPMMV Genome polyprotein OS=Sweet potato mild 
mottle virus (isolate Salazar) OX=652105 PE=2 SV=1
Length=3456

 Score = 42.0 bits (97),  Expect = 0.039, Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 87/263 (33%), Gaps = 21/263 (8%)

Query  494   IVNNLDKSAGFPFNKWGKARLYYDSMSYE-------DQDALFAYTKRNVIPTITQMNLKY  546
             I ++L+K +       GK   +   ++ E       +  AL       V     +  L++
Sbjct  2767  IFDDLNKKSSMGALYSGKKGQWMHGLTPEDAISLAVESYALLNSGHLGVWSGSLKAELRH  2826

Query  547   AISAKN-RARTVAGVSICSTMTNRQFHQKLLKSIAATR-GATVVIGTSKFYGGWHNMLKT  604
                 K  + R   G  I + +  +                    +G +KF  GW+ +   
Sbjct  2827  VDKLKEGKTRVFTGAPIDTLLAGKILVDNFNNYFYKCHLQGPWTVGINKFNRGWNKLANY  2886

Query  605   VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS  664
                D      +  D  + D ++P ++     ++ +         +     L  E   V +
Sbjct  2887  FNHD---WVFIDCDGSRFDSSIPPIMFNAVCMLRSVFGDLDPDENQTLSNLYTEI--VNT  2941

Query  665   EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ  724
              ++   G++  K  G +SG  +T   N++  +     A   A+      +   KYV N  
Sbjct  2942  PILTIEGNIIRKFRGNNSGQPSTVVDNTLILMI----AMEYAIAKVFVTRPDIKYVCNGD  2997

Query  725   HRLYECLYRNR--DVDTDFVNEF  745
               L     R+    +   F + F
Sbjct  2998  -DLLINCPRSTANAISEHFKDVF  3019


>sp|P36312|POL1_CPSMV RNA1 polyprotein OS=Cowpea severe mosaic 
virus (strain DG) OX=31716 PE=3 SV=1
Length=1858

 Score = 41.6 bits (96),  Expect = 0.040, Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 58/158 (37%), Gaps = 10/158 (6%)

Query  551   KNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVE  610
             K R  TV  +     +  R+F + ++  +      +  +G + +   W  +  ++    +
Sbjct  1361  KTRCFTVLPMEYNL-VVRRKFLKFVVFIMKNRHRLSCQVGINPYGMEWSRLAMSLLE--K  1417

Query  611   NPHLMGWDYPKCD-RAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC  669
               +++  DY   D      ++ +M+ ++      +      R   L   C    S   +C
Sbjct  1418  GNNILCCDYSSFDGLLTKQVMHLMSEMINELCGGSSRLKQQRTNLLMACC----SRYALC  1473

Query  670   GGSLYVKPGGTSSGDATTAYANSVFN--ICQAVTANVN  705
              G ++    G  SG   T   NS+FN  + +     + 
Sbjct  1474  KGEVWRVECGIPSGFPLTVICNSIFNELLVRYSYIKIC  1511


>sp|P12916|POLG_HRV1B Genome polyprotein OS=Human rhinovirus 1B 
OX=2777147 PE=1 SV=3
Length=2157

 Score = 41.6 bits (96),  Expect = 0.043, Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 72/205 (35%), Gaps = 23/205 (11%)

Query  498   LDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKR--NVIPTIT----QMNLKYAISAK  551
             L+ SAGFP+   G  +    +   +D   L     +    +P IT    ++  K  ISA 
Sbjct  1809  LNTSAGFPYVTMGIKKRDLINNKTKDISRLKEALDKYGVDLPMITFLKDELRKKEKISA-  1867

Query  552   NRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVEN  611
              + R +   SI  T+  R     L        G   V+  S            +   ++ 
Sbjct  1868  GKTRVIEASSINDTILFRTTFGNLFSKFHLNPG---VVTGSAVGCDPETFWSKIPVMLDG  1924

Query  612   PHLMGWDYPKCDRAM-PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCG  670
               +M +DY   D ++ P   + +  ++                  +N   ++     +  
Sbjct  1925  DCIMAFDYTNYDGSIHPVWFQALKKVL------------ENLSFQSNLIDRLCYSKHLFK  1972

Query  671   GSLYVKPGGTSSGDATTAYANSVFN  695
              + Y   GG  SG + T+  N++ N
Sbjct  1973  STYYEVAGGVPSGCSGTSIFNTMIN  1997


>sp|P29813|POLG_EC11G Genome polyprotein OS=Echovirus 11 (strain 
Gregory) OX=31705 PE=1 SV=4
Length=2195

 Score = 41.6 bits (96),  Expect = 0.050, Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 72/200 (36%), Gaps = 17/200 (9%)

Query  501   SAGFPFNKWGKARLYYDSMSYEDQDAL--FAYTKRNVIPTITQMNLKYAIS---AKNRAR  555
             SAG+P+   G  +    S    D   L          +P +T +  +   +   AK ++R
Sbjct  1848  SAGYPYVALGIKKRDILSRRTRDLTKLKECMDKYGLNLPMVTYVKDELRSADKVAKGKSR  1907

Query  556   TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM  615
              +   S+  ++  RQ    L ++     G    I T    G   ++  +    + + HL+
Sbjct  1908  LIEASSLNDSVAMRQTFGNLYRTFHLNPG----IVTGSAVGCDPDLFWSKIPVMLDGHLI  1963

Query  616   GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV  675
              +DY   D ++  +    A L L  +          +         +  +        Y 
Sbjct  1964  AFDYSGYDASLSPV--WFACLKLLLEKLGYTHKETNYIDYLCNSHHLYRD------KHYF  2015

Query  676   KPGGTSSGDATTAYANSVFN  695
             + GG  SG + T+  NS+ N
Sbjct  2016  ERGGMPSGYSGTSMFNSMIN  2035


>sp|Q82122|POLG_HRV16 Genome polyprotein OS=Human rhinovirus 16 
OX=31708 PE=1 SV=4
Length=2153

 Score = 41.6 bits (96),  Expect = 0.051, Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 69/203 (34%), Gaps = 19/203 (9%)

Query  498   LDKSAGFPFNKWGKARLYYDSMSYEDQDAL-FAYTKRNV-IPTITQM---NLKYAISAKN  552
             L+ SAG+P+   G  +    +   +D   L  A  K +V +P IT +     K    A  
Sbjct  1805  LNTSAGYPYVTLGIKKKDLINNKTKDISKLKLALDKYDVDLPMITFLKDELRKKDKIAAG  1864

Query  553   RARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENP  612
             + R +   SI  T+  R  +  L        G   V+               +   ++  
Sbjct  1865  KTRVIEASSINDTILFRTVYGNLFSKFHLNPG---VVTGCAVGCDPETFWSKIPLMLDGD  1921

Query  613   HLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGS  672
              +M +DY   D ++  +     +  L               RL N          +   +
Sbjct  1922  CIMAFDYTNYDGSIHPI--WFKA--LGMVLDNLSFNPTLINRLCNSKH-------IFKST  1970

Query  673   LYVKPGGTSSGDATTAYANSVFN  695
              Y   GG  SG + T+  NS+ N
Sbjct  1971  YYEVEGGVPSGCSGTSIFNSMIN  1993


>sp|P16604|POLG_SVDVH Genome polyprotein OS=Swine vesicular disease 
virus (strain H/3 '76) OX=12076 PE=3 SV=3
Length=2185

 Score = 41.6 bits (96),  Expect = 0.051, Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 71/200 (36%), Gaps = 17/200 (9%)

Query  501   SAGFPFNKWGKARLYYDSMSYEDQDAL--FAYTKRNVIPTITQMNLKYAIS---AKNRAR  555
             SAG+P+   G  +    S    D   L          +P +T +  +   +   AK ++R
Sbjct  1838  SAGYPYVALGIKKRDILSKKTRDLTKLKECMDKYGLNLPMVTYVKDELRSADKVAKGKSR  1897

Query  556   TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM  615
              +   S+  ++  RQ    L K+     G    I T    G   ++  +    + + HL+
Sbjct  1898  LIEASSLNDSVAMRQTFGNLYKTFHLNPG----IVTGSAVGCDPDVFWSKIPVMLDGHLI  1953

Query  616   GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV  675
              +DY   D ++  +      L L  +     +    +         +  +        Y 
Sbjct  1954  AFDYSGYDASLSPV--WFTCLKLLLEKLGYTNKETNYIDYLCNSHHLYRD------KHYF  2005

Query  676   KPGGTSSGDATTAYANSVFN  695
               GG  SG + T+  NS+ N
Sbjct  2006  VRGGMPSGCSGTSIFNSMIN  2025


>sp|Q66575|POLG_EC12T Genome polyprotein OS=Echovirus 12 (strain 
Travis) OX=103909 PE=1 SV=4
Length=2193

 Score = 41.6 bits (96),  Expect = 0.051, Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 70/200 (35%), Gaps = 17/200 (9%)

Query  501   SAGFPFNKWG--KARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAIS---AKNRAR  555
             SAG+P+   G  K  +         +           +P +T +  +   S   AK ++R
Sbjct  1846  SAGYPYVAIGIKKRDILSKKTKDLTKLKECMDKYGLNLPMVTYVKDELRSSEKVAKGKSR  1905

Query  556   TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM  615
              +   S+  ++  RQ    L K+     G    I T    G   ++  +    + + HL+
Sbjct  1906  LIEASSLNDSVAMRQTFGNLYKTFHLNPG----IVTGSAVGCDPDLFWSKIPVMLDGHLI  1961

Query  616   GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV  675
              +DY   D ++  +    A L L  +          +         +  +        Y 
Sbjct  1962  AFDYSGYDASLSPV--WFACLKLLLEKLGYTHRETNYIDYLCNSHHLYRD------KHYF  2013

Query  676   KPGGTSSGDATTAYANSVFN  695
               GG  SG + T+  NS+ N
Sbjct  2014  VRGGMPSGCSGTSIFNSMIN  2033


>sp|P13900|POLG_SVDVU Genome polyprotein OS=Swine vesicular disease 
virus (strain UKG/27/72) OX=12077 PE=1 SV=3
Length=2185

 Score = 41.2 bits (95),  Expect = 0.053, Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 71/200 (36%), Gaps = 17/200 (9%)

Query  501   SAGFPFNKWGKARLYYDSMSYEDQDAL--FAYTKRNVIPTITQMNLKYAIS---AKNRAR  555
             SAG+P+   G  +    S    D   L          +P +T +  +   +   AK ++R
Sbjct  1838  SAGYPYVALGIKKRDILSKKTRDLTKLKECMDKYGLNLPMVTYVKDELRSADKVAKGKSR  1897

Query  556   TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM  615
              +   S+  ++  RQ    L K+     G    I T    G   ++  +    + + HL+
Sbjct  1898  LIEASSLNDSVAMRQTFGNLYKTFHLNPG----IVTGSAVGCDPDVFWSKIPVMLDGHLI  1953

Query  616   GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV  675
              +DY   D ++  +      L L  +     +    +         +  +        Y 
Sbjct  1954  AFDYSGYDASLSPV--WFTCLKLLLEKLGYTNKETNYIDYLCNSHHLYRD------KHYF  2005

Query  676   KPGGTSSGDATTAYANSVFN  695
               GG  SG + T+  NS+ N
Sbjct  2006  VRGGMPSGCSGTSIFNSMIN  2025


>sp|Q85197|POLG_PVMA Genome polyprotein OS=Potato virus A OX=12215 
PE=1 SV=1
Length=3059

 Score = 41.2 bits (95),  Expect = 0.059, Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 92/280 (33%), Gaps = 40/280 (14%)

Query  440   FFFAQDGNAAISDYDYYRYNLPTMC-------DIRQLLFVVEVVDKYFDCYDGGCINANQ  492
             F+     N      D  +Y+                L  ++  + ++         + + 
Sbjct  2332  FYKPSKLNREAYTQDLMKYSKVIQVGEVDCGVFESALTGLLHNLGRWGFTTACYTTDEDS  2391

Query  493   VIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALF-------AYTKRNVIPTITQMNLK  545
             +    L+  A       GK R Y+D+MS  +++ L         + +  V     +  L+
Sbjct  2392  IYT-ALNMKAAVGALYRGKKRDYFDAMSPSEREHLLFLSCKRLYFGQLGVWNGSLKAELR  2450

Query  546   -YAISAKNRART--------VAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYG  596
                    N+ RT        + G  +C    N  F+   LK       A   +G +KFYG
Sbjct  2451  PKEKVDLNKTRTFTAAPIETLLGGKVCVDDFNNMFYSLHLK-------APWSVGMTKFYG  2503

Query  597   GWHNMLKTVYSDVENPHLMGWDYPKCDRAM-PNMLRIMASLVLARKHTTCCSLSHRFYRL  655
              W+ ++       ++      D  + D ++ P M+      VL  +             L
Sbjct  2504  TWNQLM---CKLPDDWVYCDADGSQFDSSISPYMINA----VLRIRLHFMEDWDIGSQML  2556

Query  656   ANECAQV-LSEMVMCGGSLYVKPGGTSSGDATTAYANSVF  694
              N   ++   +       L  K  G +SG  +T   N++ 
Sbjct  2557  QNLYTEIGTHQSQHQMAQLLKKFKGNNSGQPSTVVDNTLL  2596


>sp|P23008|POLG_HRV1A Genome polyprotein OS=Human rhinovirus 1A 
OX=12134 PE=1 SV=3
Length=2157

 Score = 41.2 bits (95),  Expect = 0.059, Method: Composition-based stats.
 Identities = 36/204 (18%), Positives = 69/204 (34%), Gaps = 21/204 (10%)

Query  498   LDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKR--NVIPTITQM---NLKYAISAKN  552
             L+ SAGFP+   G  +    +   +D   L     +    +P IT +     K    +  
Sbjct  1809  LNTSAGFPYVTMGIKKRDLINNKTKDISRLKEALDKYGVDLPMITFLKDELRKKEKISTG  1868

Query  553   RARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENP  612
             + R +   SI  T+  R     L        G   V+  S            +   ++  
Sbjct  1869  KTRVIEASSINDTILFRTTFGNLFSKFHLNPG---VVTGSAVGCDPETFWSKIPVMLDGD  1925

Query  613   HLMGWDYPKCDRAM-PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGG  671
              +M +DY   D ++ P   + +  ++                  +N   ++     +   
Sbjct  1926  CIMAFDYTNYDGSIHPVWFQALKKVL------------ENLSFQSNLIDRLCYSKHLFKS  1973

Query  672   SLYVKPGGTSSGDATTAYANSVFN  695
             + Y   GG  SG + T+  N++ N
Sbjct  1974  TYYEVAGGVPSGCSGTSIFNTMIN  1997


>sp|Q66282|POLG_CXB3W Genome polyprotein OS=Coxsackievirus B3 
(strain Woodruff) OX=103904 PE=1 SV=3
Length=2185

 Score = 41.2 bits (95),  Expect = 0.059, Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 74/200 (37%), Gaps = 17/200 (9%)

Query  501   SAGFPFNKWGKARLYYDSMSYEDQDAL--FAYTKRNVIPTITQMNLKYAIS---AKNRAR  555
             SAG+P+   G  +    S    D   L          +P +T +  +   +   AK ++R
Sbjct  1838  SAGYPYVALGIKKRDILSKKTRDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKGKSR  1897

Query  556   TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM  615
              +   S+  ++  RQ    L K+     G  VV G++   G   ++  +    + + HL+
Sbjct  1898  LIEASSLNDSVAMRQTFGNLYKTFHLNPG--VVTGSA--VGCDPDLFWSKIPVMLDGHLI  1953

Query  616   GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV  675
              +DY   D ++  +    A L L  +          +         +  +        Y 
Sbjct  1954  AFDYSGYDASLSPV--WFACLKLLLEKLGYSHKETNYIDYLCNSHHLYRD------KHYF  2005

Query  676   KPGGTSSGDATTAYANSVFN  695
               GG  SG + T+  NS+ N
Sbjct  2006  VRGGMPSGCSGTSIFNSMIN  2025


>sp|P27411|POLG_RHDV3 Genome polyprotein OS=Rabbit hemorrhagic 
disease virus (strain V-351) OX=11977 GN=ORF1 PE=1 SV=2
Length=2344

 Score = 40.8 bits (94),  Expect = 0.071, Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 48/149 (32%), Gaps = 9/149 (6%)

Query  571   FHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNML  630
             FH    +     R   + +G          ++  + S   +   +  DY K D  M   +
Sbjct  1456  FHNICYELKMVARFGPIAVGVDMTSRDVDVIINNLTSKASDFLCL--DYSKWDSTMSPCV  1513

Query  631   RIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYA  690
               +A  +LA     CC  +     +          M +    +     G  SG   T+  
Sbjct  1514  VRLAIDILAD----CCEQTELTKSVVLTLKS--HPMTILDAMIVQTKRGLPSGMPFTSVI  1567

Query  691   NSVFNICQAVTANVNALLSTDGNKIADKY  719
             NS+ +     +A V    +  G   ++ Y
Sbjct  1568  NSICHWLLW-SAAVYKSCAEIGLHCSNLY  1595


>sp|Q9YLJ1|POLG_EC05N Genome polyprotein OS=Echovirus 5 (strain 
Noyce) OX=176283 PE=3 SV=3
Length=2196

 Score = 40.8 bits (94),  Expect = 0.079, Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 72/200 (36%), Gaps = 17/200 (9%)

Query  501   SAGFPFNKWGKARLYYDSMSYEDQDAL--FAYTKRNVIPTITQMNLKYAIS---AKNRAR  555
             SAG+P+   G  +    S   +D   L          +P +T +  +   +   AK ++R
Sbjct  1849  SAGYPYVALGIKKRDILSKRTKDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKGKSR  1908

Query  556   TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM  615
              +   S+  ++  RQ    L K+     G    I T    G   ++  +    + + HL+
Sbjct  1909  LIEASSLNDSVAMRQTFGNLYKTFHLNPG----IVTGSAVGCDPDLFWSKIPVMLDGHLI  1964

Query  616   GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV  675
              +DY   D ++  +    A L +  +          +         +  +        Y 
Sbjct  1965  AFDYSGYDASLSPV--WFACLKMLLEKLGYTHKETNYIDYLCNSHHLYRD------KHYF  2016

Query  676   KPGGTSSGDATTAYANSVFN  695
               GG  SG + T+  NS+ N
Sbjct  2017  VRGGMPSGCSGTSIFNSMIN  2036


>sp|Q66577|POLG_EC09B Genome polyprotein OS=Echovirus 9 (strain 
Barty) OX=103914 PE=3 SV=3
Length=2203

 Score = 40.8 bits (94),  Expect = 0.079, Method: Composition-based stats.
 Identities = 39/200 (20%), Positives = 72/200 (36%), Gaps = 17/200 (9%)

Query  501   SAGFPFNKWGKARLYYDSMSYEDQDAL--FAYTKRNVIPTITQMNLKYAISAKN---RAR  555
             SAG+P+   G  +    S   +D   L          +P +T +  +   + K+   ++R
Sbjct  1856  SAGYPYVALGIKKRDILSKRTKDLTKLKECMDKYGLNLPMVTYVKDELRSAEKSPRGKSR  1915

Query  556   TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM  615
              +   S+  ++  RQ    L K      G    I T    G   ++  +    + + HL+
Sbjct  1916  LIEASSLNDSVAMRQTFGNLYKVFHLNPG----IVTGSAVGCDPDVFWSKIPVMLDGHLI  1971

Query  616   GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV  675
              +DY   D ++  +    A L L  +     S    +         +  +        Y 
Sbjct  1972  AFDYSGYDASLSPV--WFACLKLLLEKLGYSSKETNYIDYLCNSHHLYRD------KHYF  2023

Query  676   KPGGTSSGDATTAYANSVFN  695
               GG  SG + T+  NS+ N
Sbjct  2024  VRGGMPSGCSGTSIFNSMIN  2043


>sp|Q9YLG5|POLG_CXB2O Genome polyprotein OS=Coxsackievirus B2 
(strain Ohio-1) OX=231473 PE=1 SV=3
Length=2187

 Score = 40.4 bits (93),  Expect = 0.098, Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 70/200 (35%), Gaps = 17/200 (9%)

Query  501   SAGFPFNKWG--KARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAIS---AKNRAR  555
             SAG+P+   G  K  +         +           +P +T +  +   +   AK ++R
Sbjct  1840  SAGYPYVALGIKKRDILSKKTKDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKGKSR  1899

Query  556   TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM  615
              +   S+  ++  RQ    L K+     G    I T    G   +M  +    + + HL+
Sbjct  1900  LIEASSLNDSVAMRQTFGNLYKAFHLNPG----IVTGSAVGCDPDMFWSKIPVMLDGHLI  1955

Query  616   GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV  675
              +DY   D ++  +    A L L  +          +         +  +        Y 
Sbjct  1956  AFDYSGYDASLSPV--WFACLKLLLEKLGYTHKETNYIDYLCNSHHLYRD------KHYF  2007

Query  676   KPGGTSSGDATTAYANSVFN  695
               GG  SG + T+  NS+ N
Sbjct  2008  VRGGMPSGCSGTSIFNSMIN  2027


>sp|Q672I1|POLG_SVSAP Genome polyprotein OS=Sapporo virus (isolate 
GI/Human/Germany/pJG-Sap01) OX=291175 PE=3 SV=1
Length=2280

 Score = 40.0 bits (92),  Expect = 0.12, Method: Composition-based stats.
 Identities = 51/284 (18%), Positives = 91/284 (32%), Gaps = 37/284 (13%)

Query  455   YYRYNLPTMCDIRQLLF-VVEVVDKYFDC----YDGGCINANQVIVNNLDKSAGFPFNKW  509
                Y  PT     QLL   V  V  Y +     +    +  +Q        ++  PF + 
Sbjct  1271  LKPYTEPTAGVPPQLLSRAVTHVRSYIETIIGTHRSPVLTYHQACELLERTTSCGPFVQ-  1329

Query  510   GKARLYYDSMSYEDQDAL-------FAYTKRNVIP-TITQMNLK--YAISAKNRA---RT  556
             G    Y+D    +    L       +    + + P    ++ LK       KN+A   R 
Sbjct  1330  GLKGDYWDEEQQQYTGVLANHLEQAWDKANKGIAPRNAYKLALKDELRPIEKNKAGKRRL  1389

Query  557   VAGVSICSTMTNRQFHQKLLKSI-AATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM  615
             + G    +T+      + +   +   T    V +G +        M  ++   V    L 
Sbjct  1390  LWGCDAATTLIATAAFKAVATRLQVVTPMTPVAVGINMDSVQMQVMNDSLKGGV----LY  1445

Query  616   GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMV--MCGGSL  673
               DY K D      +   +  +L R            + + +   + LS           
Sbjct  1446  CLDYSKWDSTQNPAVTAASLAILERFAE--------PHPIVSCAIEALSSPAEGYVNDIK  1497

Query  674   YVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIAD  717
             +V  GG  SG   T+  NS+ N    V A +  L + + + +  
Sbjct  1498  FVTRGGLPSGMPFTSVVNSI-NHMIYVAAAI--LQAYESHNVPY  1538


>sp|Q69014|POLG_SVM93 Genome polyprotein OS=Sapporo virus (strain 
Human/United Kingdom/Manchester/1993) OX=82659 GN=ORF1 PE=1 
SV=2
Length=2280

 Score = 40.0 bits (92),  Expect = 0.12, Method: Composition-based stats.
 Identities = 51/284 (18%), Positives = 91/284 (32%), Gaps = 37/284 (13%)

Query  455   YYRYNLPTMCDIRQLLF-VVEVVDKYFDC----YDGGCINANQVIVNNLDKSAGFPFNKW  509
                Y  PT     QLL   V  V  Y +     +    +  +Q        ++  PF + 
Sbjct  1271  LKPYTEPTAGVPPQLLSRAVTHVRSYIETIIGTHRSPVLTYHQACELLERTTSCGPFVQ-  1329

Query  510   GKARLYYDSMSYEDQDAL-------FAYTKRNVIP-TITQMNLK--YAISAKNRA---RT  556
             G    Y+D    +    L       +    + + P    ++ LK       KN+A   R 
Sbjct  1330  GLKGDYWDEEQQQYTGVLANHLEQAWDKANKGIAPRNAYKLALKDELRPIEKNKAGKRRL  1389

Query  557   VAGVSICSTMTNRQFHQKLLKSI-AATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM  615
             + G    +T+      + +   +   T    V +G +        M  ++   V    L 
Sbjct  1390  LWGCDAATTLIATAAFKAVATRLQVVTPMTPVAVGINMDSVQMQVMNDSLKGGV----LY  1445

Query  616   GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMV--MCGGSL  673
               DY K D      +   +  +L R            + + +   + LS           
Sbjct  1446  CLDYSKWDSTQNPAVTAASLAILERFAE--------PHPIVSCAIEALSSPAEGYVNDIK  1497

Query  674   YVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIAD  717
             +V  GG  SG   T+  NS+ N    V A +  L + + + +  
Sbjct  1498  FVTRGGLPSGMPFTSVVNSI-NHMIYVAAAI--LQAYESHNVPY  1538


>sp|Q03053|POLG_CXB5P Genome polyprotein OS=Coxsackievirus B5 
(strain Peterborough / 1954/UK/85) OX=103907 PE=1 SV=3
Length=2185

 Score = 40.0 bits (92),  Expect = 0.13, Method: Composition-based stats.
 Identities = 37/200 (19%), Positives = 70/200 (35%), Gaps = 17/200 (9%)

Query  501   SAGFPFNKWG--KARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAIS---AKNRAR  555
             SAG+P+   G  K  +         +           +P +T +  +   +   AK ++R
Sbjct  1838  SAGYPYVALGIKKRDILSKKTKDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKGKSR  1897

Query  556   TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM  615
              +   S+  ++  RQ    L K+     G    I T    G   ++  +    + + HL+
Sbjct  1898  LIEASSLNDSVAMRQTFGNLYKTFHLNPG----IVTGSAVGCDPDLFWSKIPVLLDGHLI  1953

Query  616   GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV  675
              +DY   D ++  +    A L L  +          +         +  +        Y 
Sbjct  1954  AFDYSGYDASLSPV--WFACLKLLLEKLGYTHKETNYIDYLCNSHHLYRD------KHYF  2005

Query  676   KPGGTSSGDATTAYANSVFN  695
               GG  SG + T+  NS+ N
Sbjct  2006  VRGGMPSGCSGTSIFNSMIN  2025


>sp|B9VUU3|POLG_HE71 Genome polyprotein OS=Human enterovirus 71 
OX=39054 PE=1 SV=1
Length=2193

 Score = 39.7 bits (91),  Expect = 0.16, Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 78/238 (33%), Gaps = 17/238 (7%)

Query  484   DGGCINANQVIVNNLDKSAGFPFNKWG-KARLYYDSMSYEDQDALFAYTKRNV-IPTITQ  541
             +  C   + +   +L  SAG+P++  G K R   D  + +     F   K  + +P  T 
Sbjct  1829  EEACYGTDNLEAIDLHTSAGYPYSALGIKKRDILDPTTRDVSKMKFYMDKYGLDLPYSTY  1888

Query  542   MNLKYA---ISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGW  598
             +  +        K ++R +   S+  ++  R     L ++  A  G    +  S      
Sbjct  1889  VKDELRSIDKIKKGKSRLIEASSLNDSVYLRMAFGHLYETFHANPGT---VTGSAVGCNP  1945

Query  599   HNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANE  658
                   +   +    L  +DY   D ++  +     +L L  +       +       N 
Sbjct  1946  DVFWSKLPILLPGS-LFAFDYSGYDASLSPV--WFRALELVLREIGYSEEAVSLIEGINH  2002

Query  659   CAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA  716
                V      C        GG  SG + T+  N++ N        +      D +++ 
Sbjct  2003  THHVYRNKTYCV------LGGMPSGCSGTSIFNTMINNIIIRALLIKTFKGIDLDELN  2054


>sp|A4KZ49|POLG_TRMVU Genome polyprotein OS=Triticum mosaic virus 
(isolate Triticum aestivum/United States/U06-123/2006) OX=1289472 
PE=1 SV=3
Length=3112

 Score = 39.7 bits (91),  Expect = 0.17, Method: Composition-based stats.
 Identities = 27/145 (19%), Positives = 55/145 (38%), Gaps = 8/145 (6%)

Query  551   KNRARTVAGVSICSTMTNRQFHQKLLKSIAAT-RGATVVIGTSKFYGGWHNMLKTVYSDV  609
             + + R         +   + F         AT  G+   +G +KF  GW  + +    D 
Sbjct  2510  EKKTRVFTAAPFDVSFGAKAFVDDFNNKFYATQAGSNWTVGINKFNCGWDELARRFNPDW  2569

Query  610   ENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMV-M  668
             +    +  D  + D ++  +L    +++  R+H    +   R   L+N   Q++   +  
Sbjct  2570  K---FIDADGSRYDSSLTPLL--FNAVLRIRQHFLRANGFER-RMLSNFYTQLVWTPIST  2623

Query  669   CGGSLYVKPGGTSSGDATTAYANSV  693
               G +  K  G  SG  +T   N++
Sbjct  2624  ITGQIVKKNKGGPSGQPSTVVDNTM  2648


>sp|O91734|POLG_EC01F Genome polyprotein OS=Echovirus 1 (strain 
Human/Egypt/Farouk/1951) OX=103908 PE=1 SV=4
Length=2184

 Score = 39.3 bits (90),  Expect = 0.20, Method: Composition-based stats.
 Identities = 37/200 (19%), Positives = 71/200 (36%), Gaps = 17/200 (9%)

Query  501   SAGFPFNKWG--KARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAIS---AKNRAR  555
             SAG+P+   G  K  +         +           +P +T +  +   +   AK ++R
Sbjct  1837  SAGYPYVALGIKKRDILSKKTKDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKGKSR  1896

Query  556   TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM  615
              +   S+  ++  RQ    L K+     G    I T    G   ++  +    + + HL+
Sbjct  1897  LIEASSLNDSVAMRQTFGNLYKTFHLNPG----IVTGSAVGCDPDVFWSKIPVMLDGHLI  1952

Query  616   GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV  675
              +DY   D ++  +    A L L  +     +    +         +  +        Y 
Sbjct  1953  AFDYSGYDASLSPV--WFACLKLLLEKLGYTNKETNYIDYLCNSHHLYRD------KHYF  2004

Query  676   KPGGTSSGDATTAYANSVFN  695
               GG  SG + T+  NS+ N
Sbjct  2005  VRGGMPSGCSGTSIFNSMIN  2024


>sp|P90245|POL1_BAMMN Genome polyprotein 1 OS=Barley mild mosaic 
virus (strain Na1) OX=103900 PE=3 SV=1
Length=2258

 Score = 39.3 bits (90),  Expect = 0.24, Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 67/181 (37%), Gaps = 20/181 (11%)

Query  545   KYAISAKNRARTVAGVSICSTMT------NRQFHQKLLKSIAATRGATVVIGTSKFYGGW  598
             +  +  K R  T A ++    M       N+QF++  LK       A   +G +KF  GW
Sbjct  1681  QKILERKTRVFTAAPITSLIAMKYYVDDFNKQFYKTHLK-------APHTVGINKFNRGW  1733

Query  599   HNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANE  658
              N+ + +            D  + D ++   L     +   RKH        +   +  E
Sbjct  1734  QNLYEKLNK--PGWTHGSGDGSRFDSSIDGFL--FDVIKDIRKHFMDAEHHKQLDTIYEE  1789

Query  659   CAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADK  718
                V +++ +  G +  K  G +SG  +T   N++  +  +       L   D  ++ D+
Sbjct  1790  I--VNTKICLANGLVIQKNCGNNSGQPSTVVDNTL-ALMTSFLYAYARLTGDDTFELMDE  1846

Query  719   Y  719
              
Sbjct  1847  N  1847


>sp|P12915|POLG_BOVEV Genome polyprotein OS=Bovine enterovirus 
(strain VG-5-27) OX=12065 PE=1 SV=3
Length=2175

 Score = 39.3 bits (90),  Expect = 0.24, Method: Composition-based stats.
 Identities = 42/237 (18%), Positives = 81/237 (34%), Gaps = 37/237 (16%)

Query  501   SAGFPFNKWGKARLYYDSMSYEDQDAL----FAYTKRNVIPTITQMNLK-YAISA--KNR  553
             SA +P+   G  +   D ++ E +D              +P +T +  +  A     K +
Sbjct  1829  SASYPYVAMGIKKR--DILNKETRDVTKMQECIDKYGLNLPMVTYVKDELRAPDKIRKGK  1886

Query  554   ARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPH  613
             +R +   S+  ++  R +    L  +  T   T+   +    G       +    + +  
Sbjct  1887  SRLIEASSLNDSVAMRCYF-GNLYKVFHTNPGTI---SGCAVGCDPETFWSKIPVMMDGE  1942

Query  614   LMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSL  673
             L G+DY   D ++  M     + VL R     C                  + + C   L
Sbjct  1943  LFGFDYTAYDASLSPMWFHALAEVLRRIGFVECKH--------------FIDQLCCSHHL  1988

Query  674   YVKP-----GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQH  725
             Y+       GG  SG + T+  NS+ N        +  L+ T    I    ++ + +
Sbjct  1989  YMDKHYYVVGGMPSGCSGTSIFNSMINNLI-----IRTLVLTVYKNIDLDDLKIIAY  2040


>sp|Q05057|POLG_PYFV1 Genome polyprotein OS=Parsnip yellow fleck 
virus (isolate P-121) OX=33762 PE=1 SV=1
Length=3027

 Score = 38.9 bits (89),  Expect = 0.29, Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 64/188 (34%), Gaps = 12/188 (6%)

Query  551   KNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVE  610
             K R  ++  V        R F    +  +A      +++G +     W ++  ++     
Sbjct  2458  KTRLFSILPVEFNMH-ARRLFLDFNVFVMANRHKHGIMVGINPHSREWSDLAISL--ASF  2514

Query  611   NPHLMGWDYPKCDRAM-PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC  669
             +P+    D+   D    P+   +++ L          +      R+      ++      
Sbjct  2515  SPYGFNGDFANFDGMFHPSSFSMVSELANIFYGNFLSTERDNLTRMLTNRFSLM------  2568

Query  670   GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYE  729
              G++   PGG  SG   T   NS  N+   + +    L   +G +       N    +  
Sbjct  2569  KGAILRVPGGGPSGFPMTVIFNSFINLF-YLQSAWIMLARFNGRQDISHP-CNFPKYVRA  2626

Query  730   CLYRNRDV  737
             C+Y + ++
Sbjct  2627  CVYGDDNI  2634


>sp|Q86887|POLG_CXB4E Genome polyprotein OS=Coxsackievirus B4 
(strain E2) OX=103905 PE=3 SV=3
Length=2183

 Score = 38.9 bits (89),  Expect = 0.31, Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 71/216 (33%), Gaps = 17/216 (8%)

Query  501   SAGFPFNKWG--KARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAIS---AKNRAR  555
             SAG+P+   G  K  +         +           +P +T +  +   +   AK ++R
Sbjct  1836  SAGYPYVTLGIKKRDILSKKTKDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKGKSR  1895

Query  556   TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM  615
              +   S+  ++  RQ    L K+     G    I T    G   ++  +    + + HL 
Sbjct  1896  LIEASSLNDSVAMRQTFGNLYKTFHLNPG----IVTGSAVGCDPDLFWSKIPVMLDGHLR  1951

Query  616   GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV  675
              +DY   D ++  +    A L L  +          +         +  +        Y 
Sbjct  1952  AFDYSGYDASLSPV--WFACLKLLLEKLGYSHKETNYIDYLCNSHHLYRD------KHYF  2003

Query  676   KPGGTSSGDATTAYANSVFNICQAVTANVNALLSTD  711
               GG  SG + T+  NS+ N     T         D
Sbjct  2004  VRGGMPSGCSGTSIFNSMINNIIIRTLMFKVYKGID  2039


>sp|Q9QF31|POLG_CX16T Genome polyprotein OS=Coxsackievirus A16 
(strain Tainan/5079/98) OX=231417 PE=1 SV=3
Length=2193

 Score = 38.9 bits (89),  Expect = 0.32, Method: Composition-based stats.
 Identities = 40/238 (17%), Positives = 79/238 (33%), Gaps = 17/238 (7%)

Query  484   DGGCINANQVIVNNLDKSAGFPFNKWG-KARLYYDSMSYEDQDALFAYTKRNV-IPTITQ  541
             +  C     +   +L  SAG+P++  G K R   D ++ +     F   K  + +P  T 
Sbjct  1829  EEACYGTEYLEAIDLHTSAGYPYSALGVKKRDILDPITRDTTKMKFYMDKYGLDLPYSTY  1888

Query  542   MNLKYA---ISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGW  598
             +  +        K ++R +   S+  ++  R     L ++  A  G    +  S      
Sbjct  1889  VKDELRSLDKIKKGKSRLIEASSLNDSVYLRMTFGHLYETFHANPGT---VTGSAVGCNP  1945

Query  599   HNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANE  658
                   +   +    L  +DY   D ++  +     +L +  +       +       N 
Sbjct  1946  DVFWSKLPILLPGS-LFAFDYSGYDASLSPV--WFRALEVVLREIGYSEEAVSLIEGINH  2002

Query  659   CAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA  716
                V      C        GG  SG + T+  NS+ N     T  +      D +++ 
Sbjct  2003  THHVYRNKTYCV------LGGMPSGCSGTSIFNSMINNIIIRTLLIKTFKGIDLDELN  2054


>sp|P89657|RDRP_PMMVJ Replicase large subunit OS=Pepper mild mottle 
virus (strain Japan) OX=138663 PE=1 SV=1
Length=1612

 Score = 38.5 bits (88),  Expect = 0.36, Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 57/165 (35%), Gaps = 3/165 (2%)

Query  447   NAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPF  506
               +    D Y+ ++ T   + Q+  V + V+ +      G ++  Q   +          
Sbjct  1101  CVSSYLLDMYKVDVSTQYQL-QIESVYKGVNLFVAAPKTGDVSDMQYYYDKCLPGNSTIL  1159

Query  507   NKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAI-SAKNRARTVAGVSICST  565
             N++    +     S   +D +   +K   +P  ++  LK  I +A  + R    +     
Sbjct  1160  NEYDAVTMQIRENSLNVKDCVLDMSKSVPLPRESETTLKPVIRTAAEKPRKPGLLENLVA  1219

Query  566   MTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVE  610
             M  R F+   L  +        ++   KF+  +    K    ++ 
Sbjct  1220  MIKRNFNSPELVGVVDIEDTASLV-VDKFFDAYLIKEKKKPKNIP  1263


>sp|Q12018|CDC53_YEAST Cell division control protein 53 OS=Saccharomyces 
cerevisiae (strain ATCC 204508 / S288c) OX=559292 
GN=CDC53 PE=1 SV=1
Length=815

 Score = 38.5 bits (88),  Expect = 0.36, Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 71/189 (38%), Gaps = 17/189 (9%)

Query  728  YECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLY  787
            +    R         +E Y  L+ +    IL+       NS    Q  V   K F     
Sbjct  69   FSTDSRTGQSTILVGSEIYEKLKNYLKNYILN---FKQSNSETFLQFYVKRWKRFTIGAI  125

Query  788  YQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDI  847
            + N+ F    + W + + + G       +T+ +    + ++    DPS+ +     +D +
Sbjct  126  FLNHAFDYMNRYWVQKERSDGKRHIFDVNTLCLMTWKEVMF----DPSKDVLINELLDQV  181

Query  848  V---------KTDGTLMIERFVSLAIDAYPLTKHPNQEYADVF-HLYLQYIRKLHDELTG  897
                      +++ +  I+  V+L ID   L K     Y  VF   +L+  ++ + + T 
Sbjct  182  TLGREGQIIQRSNISTAIKSLVALGIDPQDLKKLNLNVYIQVFEKPFLKKTQEYYTQYTN  241

Query  898  HMLDMYSVM  906
              L+ +SV 
Sbjct  242  DYLEKHSVT  250


>sp|P89509|POLG_TUMVJ Genome polyprotein OS=Turnip mosaic virus 
(strain Japanese) OX=12230 PE=1 SV=2
Length=3164

 Score = 38.5 bits (88),  Expect = 0.38, Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 80/223 (36%), Gaps = 34/223 (15%)

Query  494   IVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYT-------KRNVIPTITQMNLK-  545
             I   L+  +       GK + Y+   + E ++ +   +       K  V     +  L+ 
Sbjct  2477  IFEALNMKSAVGALYKGKKKDYFAEFTPEMKEEILKQSCERLFLGKMGVWNGSLKAELRP  2536

Query  546   --YAISAKNRA------RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGG  597
                  + K R        T+ G  +C    N QF+   L+       A   +G +KFY G
Sbjct  2537  LEKVEANKTRTFTAAPLDTLLGGKVCVDDFNNQFYDHNLR-------APWSVGMTKFYCG  2589

Query  598   WHNMLKTVYSDVENPHLMGWDYPKCDRAM--PNMLRIMASLVLARKHTTCCSLSHRFYRL  655
             W  +L+++          GW Y   D +    ++   + + VL  +             L
Sbjct  2590  WDRLLESLPD--------GWVYCDADGSQFDSSLSPYLINAVLNIRLGFMEEWDIGEVML  2641

Query  656   ANECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNIC  697
              N   +++   +    G+L  K  G +SG  +T   N++  I 
Sbjct  2642  RNLYTEIVYTPISTPDGTLVKKFKGNNSGQPSTVVDNTLMVIL  2684


>sp|P08292|POLG_CXB4J Genome polyprotein OS=Coxsackievirus B4 
(strain JVB / Benschoten / New York/51) OX=103906 PE=1 SV=4
Length=2183

 Score = 38.5 bits (88),  Expect = 0.38, Method: Composition-based stats.
 Identities = 37/200 (19%), Positives = 70/200 (35%), Gaps = 17/200 (9%)

Query  501   SAGFPFNKWG--KARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAIS---AKNRAR  555
             SAG+P+   G  K  +         +           +P +T +  +   +   AK ++R
Sbjct  1836  SAGYPYVALGIKKRDILSKKTKDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKGKSR  1895

Query  556   TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM  615
              +   S+  ++  RQ    L K+     G    I T    G   ++  +    + + HL+
Sbjct  1896  LIEASSLNDSVAMRQTFGNLYKAFHLNPG----IVTGSAVGCDPDVFWSKIPVMLDGHLI  1951

Query  616   GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV  675
              +DY   D ++  +    A L L  +          +         +  +        Y 
Sbjct  1952  AFDYSGYDASLSPV--WFACLKLLLEKLGYTHKETNYIDYLCNSHHLYRD------KHYF  2003

Query  676   KPGGTSSGDATTAYANSVFN  695
               GG  SG + T+  NS+ N
Sbjct  2004  VRGGMPSGCSGTSIFNSMIN  2023


>sp|Q8JN60|POLG_BECNB Genome polyprotein OS=Bovine enteric calicivirus 
NB (isolate Bovine/United States/N ebraska/1980) OX=2847999 
GN=ORF1 PE=3 SV=1
Length=2210

 Score = 38.5 bits (88),  Expect = 0.41, Method: Composition-based stats.
 Identities = 27/154 (18%), Positives = 46/154 (30%), Gaps = 17/154 (11%)

Query  550   AKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGA-TVVIGTSKFYGG----WHNMLKT  604
             A+ + R + G      +        +  ++        V +G           W N L  
Sbjct  1318  AEGKRRLIWGADARVALIASAALSPIANALKTVTNLLPVQVGVDPSSASCVSAWVNRLNR  1377

Query  605   VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS  664
                     H +  DY K D  M  +L  +A  +L      C + +    R+A        
Sbjct  1378  H------DHCLELDYSKWDSTMSPVLINIAIDIL------CNTCASDGLRVAVCQTLKTR  1425

Query  665   EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQ  698
                +  G       G  SG   T+  NS+ +   
Sbjct  1426  PTALVEGVAVPTKSGLPSGMPFTSQINSIVHWIL  1459


>sp|P14879|PYR4_MICDP Phycobilisome 31.6 kDa linker polypeptide, 
phycocyanin-associated, rod OS=Microchaete diplosiphon OX=1197 
GN=cpcI3 PE=3 SV=1
Length=285

 Score = 37.3 bits (85),  Expect = 0.53, Method: Composition-based stats.
 Identities = 20/85 (24%), Positives = 37/85 (44%), Gaps = 4/85 (5%)

Query  708  LSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFN  767
            L T+GN    ++VR L       LY+++    +F +       KH       D++ + ++
Sbjct  61   LLTNGNITVQEFVRQLAK---SNLYKSKFFSNNFHSRVTELNFKHLLGRAPYDESEIIYH  117

Query  768  ST-YASQGLVASIKNFKSVLYYQNN  791
               Y ++G  A I ++     YQ N
Sbjct  118  LDLYQTKGYEADIDSYIDSAEYQTN  142


>sp|Q8B3M2|POLG_DWV Genome polyprotein OS=Deformed wing virus 
OX=198112 PE=1 SV=2
Length=2893

 Score = 38.1 bits (87),  Expect = 0.53, Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 72/218 (33%), Gaps = 24/218 (11%)

Query  545   KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATR-GATVVIGTSKFYGGWHNMLK  603
             K  I  K R  +++ V    T+  RQ++   + S  A R  A   IG       W N+  
Sbjct  2569  KCRIPGKTRIFSISPVQF--TIPFRQYYLDFMASYRAARLNAEHGIGIDVNSLEWTNLAT  2626

Query  604   TVYSDVENPHLMGWDY----PKCDRAMPNM-LRIMASLVLARKHTTCCSLSHRFYRLANE  658
              +       H++  DY    P  D  +      I+   VL            R      +
Sbjct  2627  RLSKX--GTHIVTGDYKNFGPGLDSDVAASAFEIIIDWVLHYTEEDNKDEMKRVMWTMAQ  2684

Query  659   CAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADK  718
               ++L+   +    +Y  P G  SG   T   N++ N           L+      I D 
Sbjct  2685  --EILAPSHLYRDLVYRVPCGIPSGSPITDILNTISN---------CLLIRLAWLGITDL  2733

Query  719   YVRNLQHRLYECLYRN---RDVDTDFVNEFYAYLRKHF  753
              +      +    Y +    +V  + +++F A     F
Sbjct  2734  PLSEFSQNVVLVCYGDDLIMNVSDNMIDKFNAVTIGKF  2771


>sp|Q85036|RDRP_ROTPY RNA-directed RNA polymerase OS=Rotavirus 
A (strain RVA/Pig/Mexico/YM/1983/G11P9[7]) OX=10919 PE=2 SV=1
Length=1088

 Score = 37.7 bits (86),  Expect = 0.67, Method: Composition-based stats.
 Identities = 47/262 (18%), Positives = 88/262 (34%), Gaps = 26/262 (10%)

Query  553  RARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENP  612
            R R +  +            +K+L     TR        S     + ++ + + S+    
Sbjct  458  RTRIIFILPYEYNSAQHAVVEKMLSYAKHTREYAEFYSQSNQLLSYGDVTRFLSSNS---  514

Query  613  HLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQ----VLSEMVM  668
             ++  D  + D +  N       +++        +   +  +  N   Q    ++   V 
Sbjct  515  MVLYTDVSQWDSSQHNTQPFRKGIIMGLDMLANMTNDPKVVQTLNLYKQTQINLMDSYVQ  574

Query  669  CGGSLYVKP---GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA--DKYVRNL  723
                  +K    G  +SG+  T  ANS+ N+     A +  +LS   NK +   K +R  
Sbjct  575  IPDGNVIKKIQYGAVASGEKQTKAANSIANL-----ALIKTVLSRIANKYSFITKIIRVD  629

Query  724  QHRLYECLYRNRDVDTDFVNEF-----YAYLRKHFSMMILSDDAVVCFNSTYASQGLVAS  778
                Y  L  N DV    V E      Y Y R +  +  L     +     Y + G +  
Sbjct  630  GDDNYAVLQFNTDVTKQMVQEVSNDVRYIYSRMNAKVKALVSTVGIEIAKRYIAGGKIF-  688

Query  779  IKNFKSVLYYQNNVFMSEAKCW  800
               F++ +   NN    ++  W
Sbjct  689  ---FRAGINLLNNEKRGQSTQW  707


>sp|Q6W8W5|POL1_ARMVN RNA1 polyprotein OS=Arabis mosaic virus 
(isolate NW) OX=282063 PE=3 SV=1
Length=2284

 Score = 37.7 bits (86),  Expect = 0.68, Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 6/117 (5%)

Query  579   IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVL  638
             +         +G + +   W ++   +    ++      DY   D  +   +  + + ++
Sbjct  1696  MKKRSHLPCQVGINPYSREWTDLYHRLAE--KSDVGYNCDYKGFDGLITEQILAVVATMI  1753

Query  639   ARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFN  695
                     S   R   L      +   + +CG  +Y    G  SG A T   NS+FN
Sbjct  1754  NAGFRNPVSNQQRSNLLM----AISGRLSICGSQVYETEAGIPSGCALTVVINSIFN  1806


>sp|Q02597|POLG_TUMVQ Genome polyprotein OS=Turnip mosaic virus 
(strain Quebec) OX=36396 PE=1 SV=2
Length=3163

 Score = 37.7 bits (86),  Expect = 0.71, Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 80/223 (36%), Gaps = 34/223 (15%)

Query  494   IVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYT-------KRNVIPTITQMNLK-  545
             I   L+  +       GK + Y+   + E ++ +   +       K  V     +  L+ 
Sbjct  2476  IFEALNMKSAVGALYKGKKKDYFAEFTPEVKEEILKQSCERLFLGKMGVWNGSLKAELRP  2535

Query  546   --YAISAKNRA------RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGG  597
                  + K R        T+ G  +C    N QF+   L+       A   +G +KFY G
Sbjct  2536  LEKVEANKTRTFTAAPLDTLLGGKVCVDDFNNQFYDHNLR-------APWDVGMTKFYCG  2588

Query  598   WHNMLKTVYSDVENPHLMGWDYPKCDRAM--PNMLRIMASLVLARKHTTCCSLSHRFYRL  655
             W  +L+++          GW Y   D +    ++   + + VL  +             L
Sbjct  2589  WDRLLESLPD--------GWVYCDADGSQFDSSLSPYLINAVLNIRLGFMEEWDVGEVML  2640

Query  656   ANECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNIC  697
              N   +++   +    G+L  K  G +SG  +T   N++  I 
Sbjct  2641  RNLYTEIVYTPISTPDGTLVKKFKGNNSGQPSTVVDNTLMVIL  2683


>sp|P04936|POLG_HRV2 Genome polyprotein OS=Human rhinovirus 2 
OX=12130 PE=1 SV=3
Length=2150

 Score = 37.3 bits (85),  Expect = 0.84, Method: Composition-based stats.
 Identities = 38/203 (19%), Positives = 71/203 (35%), Gaps = 19/203 (9%)

Query  498   LDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKR--NVIPTITQM---NLKYAISAKN  552
             L+ SAGFP+   G  +    +   +D   L     +    +P +T +     K+    K 
Sbjct  1802  LNTSAGFPYIAMGVKKRDLINNKTKDISKLKEAIDKYGVDLPMVTFLKDELRKHEKVIKG  1861

Query  553   RARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENP  612
             + R +   S+  T+  R     L        G  +V G S            + + +++ 
Sbjct  1862  KTRVIEASSVNDTLLFRTTFGNLFSKFHLNPG--IVTG-SAVGCDPEVFWSKIPAMLDDK  1918

Query  613   HLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGS  672
              +M +DY   D ++  +     +L           LS     +   C        +   +
Sbjct  1919  CIMAFDYTNYDGSIHPI--WFEAL-----KQVLVDLSFNPTLIDRLCKS----KHIFKNT  1967

Query  673   LYVKPGGTSSGDATTAYANSVFN  695
              Y   GG  SG + T+  N++ N
Sbjct  1968  YYEVEGGVPSGCSGTSIFNTMIN  1990


>sp|P03313|POLG_CXB3N Genome polyprotein OS=Coxsackievirus B3 
(strain Nancy) OX=103903 PE=1 SV=4
Length=2185

 Score = 37.3 bits (85),  Expect = 0.87, Method: Composition-based stats.
 Identities = 37/200 (19%), Positives = 71/200 (36%), Gaps = 17/200 (9%)

Query  501   SAGFPFNKWG--KARLYYDSMSYEDQDALFAYTKRNVIPTITQM---NLKYAISAKNRAR  555
             SAG+P+   G  K  +         +           +P +T +          AK ++R
Sbjct  1838  SAGYPYVALGIKKRDILSKKTKDLTKLKECMDKYGLNLPMVTYVKDELRSIEKVAKGKSR  1897

Query  556   TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM  615
              +   S+  ++  RQ    L K+     G  VV G++   G   ++  +    + + HL+
Sbjct  1898  LIEASSLNDSVAMRQTFGNLYKTFHLNPG--VVTGSA--VGCDPDLFWSKIPVMLDGHLI  1953

Query  616   GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV  675
              +DY   D ++  +    A L +  +          +         +  +        Y 
Sbjct  1954  AFDYSGYDASLSPV--WFACLKMLLEKLGYTHKETNYIDYLCNSHHLYRD------KHYF  2005

Query  676   KPGGTSSGDATTAYANSVFN  695
               GG  SG + T+  NS+ N
Sbjct  2006  VRGGMPSGCSGTSIFNSMIN  2025


>sp|P29098|RDRP_PMMVS Replicase large subunit OS=Pepper mild mottle 
virus (strain Spain) OX=31745 PE=3 SV=2
Length=1612

 Score = 37.3 bits (85),  Expect = 0.95, Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 57/165 (35%), Gaps = 3/165 (2%)

Query  447   NAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPF  506
               +    D Y+ ++ T   + Q+  V + V+ +      G ++  Q   +          
Sbjct  1101  CVSSYLLDMYKVDVSTQXQL-QIESVYKGVNLFVAAPKTGDVSDMQYYYDKCLPGNSTIL  1159

Query  507   NKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAI-SAKNRARTVAGVSICST  565
             N++    +     S   +D +   +K   +P  ++  LK  I +A  + R    +     
Sbjct  1160  NEYDAVTMQIRENSLNVKDCVLDMSKSVPLPRESETTLKPVIRTAAEKPRKPGLLENLVA  1219

Query  566   MTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVE  610
             M  R F+   L  +        ++   KF+  +    K    ++ 
Sbjct  1220  MIKRNFNSPELVGVVDIEDTASLV-VDKFFDAYLIKEKKKPKNIP  1263


>sp|Q6XDK8|POLG_SVM10 Genome polyprotein OS=Sapporo virus (isolate 
GII/Human/Thailand/Mc10/2000) OX=234601 GN=ORF1 PE=1 SV=1
Length=2278

 Score = 37.3 bits (85),  Expect = 0.96, Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 90/283 (32%), Gaps = 39/283 (14%)

Query  455   YYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNN-------LDKSAGFPFN  507
                Y+ PT         +++    +   Y    I  ++    +       L+KS      
Sbjct  1272  LKPYSEPTPGIP---PALLQRAATHTRTYLETIIGTHRSPNLSFSEACSLLEKSTSCGPF  1328

Query  508   KWGKARLYYDSMSYEDQDALFAY-------TKRNVIPT-ITQMNLKYAI-----SAKNRA  554
               G+   Y+D         L  +         R V P    ++ LK  +     +A+ + 
Sbjct  1329  VAGQKGDYWDEDKQCYTGVLAEHLAKAWDAANRGVAPQNAYKLALKDELRPIEKNAQGKR  1388

Query  555   RTVAGVSICSTMTNRQFHQKL---LKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVEN  611
             R + G    +T+      + +   L+++A     +V I    +       ++ +   ++ 
Sbjct  1389  RLLWGCDAGATLVATAAFKGVATRLQAVAPMTPVSVGINMDSY------QVEVLNESLKG  1442

Query  612   PHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGG  671
               L   DY K D      +   +  +L R        +     L++     L+++V    
Sbjct  1443  GVLYCLDYSKWDSTQHPAVTAASLGILERLSEATPITTSAVELLSSPARGHLNDIVFITK  1502

Query  672   SLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNK  714
             S      G  SG   T+  NS+ N      A V       G  
Sbjct  1503  S------GLPSGMPFTSVINSL-NHMTYFAAAVLKAYEQHGAP  1538


>sp|Q04574|POL1_BAYMG Genome polyprotein 1 OS=Barley yellow mosaic 
virus (isolate Germany) OX=31728 PE=3 SV=1
Length=2412

 Score = 37.3 bits (85),  Expect = 0.96, Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 52/144 (36%), Gaps = 9/144 (6%)

Query  552   NRARTVAGVSICSTMTNRQFHQKLLKSIAATR-GATVVIGTSKFYGGWHNMLKTVYSDVE  610
              + R      I S    + +     K   AT   A   +G +KF  GW  +   +  +  
Sbjct  1799  EKTRVFTASPITSLFAMKFYVDDFNKKFYATNLKAPHTVGINKFGRGWEKLHDKL--NRP  1856

Query  611   NPHLMGWDYPKCDRAM-PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC  669
                    D  + D ++ P    ++ ++   RKH            + +E   + + + + 
Sbjct  1857  GWLHGSGDGSRFDSSIDPFFFDVVKTI---RKHFLPSEHHKAIDLIYDEI--LNTTICLA  1911

Query  670   GGSLYVKPGGTSSGDATTAYANSV  693
              G +  K  G +SG  +T   N++
Sbjct  1912  NGMVIRKNVGNNSGQPSTVVDNTL  1935


>sp|A1XIP9|POL1_TOTV RNA1 polyprotein OS=Tomato torrado virus 
(isolate Solanum lycopersicum/Spain/PRIToTV0301/-) OX=686948 
PE=3 SV=1
Length=2158

 Score = 37.3 bits (85),  Expect = 1.00, Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 51/161 (32%), Gaps = 7/161 (4%)

Query  550   AKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGA-TVVIGTSKFYGGWHNMLKTVYSD  608
              K + R    +     M  R++      S+ A+  A    +G +     W  +L   +  
Sbjct  1315  GKRKTRLFEILPFHYNMLVRKYFLDFSASLMASHNALPCKVGINPGGIEWT-LLANGFRA  1373

Query  609   VENPHLMGWDYPKCDRAMPNM-LRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMV  667
             V +      DY   D   P    +    LV     +   S       +    A       
Sbjct  1374  VSDTG-FSADYSSFDGRAPIFAFQWFCDLVDDYYGSPPGSPDSNARHVLLMMAS--CHYT  1430

Query  668   MCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALL  708
             +C   ++   GG  SG A T   NS+ N    +     +LL
Sbjct  1431  ICENKVFRLVGGMPSGFALTVIFNSLLNEF-YMRYAFISLL  1470


>sp|A7J3A2|RDRP_ROTYO RNA-directed RNA polymerase OS=Rotavirus 
A (strain RVA/Human/Japan/YO/1977/G3P1A[8]) OX=578832 PE=3 
SV=1
Length=1088

 Score = 36.6 bits (83),  Expect = 1.3, Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 71/204 (35%), Gaps = 23/204 (11%)

Query  611  NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQ----VLSEM  666
            N  ++  D  + D +  N       +++     T  +   +     N   Q    ++   
Sbjct  513  NSMVLYTDVSQWDSSQHNTQPFRKGIIMGLDMLTNMTNDPKVVHTLNLYKQTQINLMDSY  572

Query  667  VMCGGSLYVKP---GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA--DKYVR  721
            V       +K    G  +SG+  T  ANS+ N+     A +  +LS   NK +   K +R
Sbjct  573  VQIPDGDVIKKIQYGAVASGEKQTKAANSIANL-----ALIKTVLSRIANKYSFITKIIR  627

Query  722  NLQHRLYECLYRNRDVDTDFVNEF-----YAYLRKHFSMMILSDDAVVCFNSTYASQGLV  776
                  Y  L  N DV    V E      Y Y R +  +  L     +     Y + G +
Sbjct  628  VDGDDNYAVLQFNTDVTKQMVQEVSDDVRYIYSRMNAKVKALVSTVGIEIAKRYIAGGKI  687

Query  777  ASIKNFKSVLYYQNNVFMSEAKCW  800
                 F++ +   NN    ++  W
Sbjct  688  F----FRAGINLLNNEKRGQSTQW  707


>sp|P03302|POLG_POL3L Genome polyprotein OS=Poliovirus type 3 
(strains P3/Leon/37 and P3/Leon 12A[1]B) OX=12088 PE=1 SV=3
Length=2206

 Score = 37.0 bits (84),  Expect = 1.3, Method: Composition-based stats.
 Identities = 42/236 (18%), Positives = 84/236 (36%), Gaps = 29/236 (12%)

Query  498   LDKSAGFPFNKWGKAR---LYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNR-  553
             L  SAG+P+   GK +   L   +   ++   L        +P +T +  K  + +K + 
Sbjct  1857  LSTSAGYPYVAMGKKKRDILNKQTRDTKEMQRLLD-AYGINLPLVTYV--KDELRSKTKV  1913

Query  554   ----ARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDV  609
                 +R +   S+  ++  R     L  +     G  VV G++   G   ++  +    +
Sbjct  1914  EQGKSRLIEASSLNDSVAMRMAFGNLYAAFHRNPG--VVTGSA--VGCDPDLFWSKIPVL  1969

Query  610   ENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC  669
                 L  +DY   D ++        +L +  +          +    N    +    + C
Sbjct  1970  MEEKLFAFDYTGYDASLSPA--WFEALKMVLEKIGFGDRVD-YIDYLNHSHHLYKNKIYC  2026

Query  670   GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQH  725
                  VK GG  SG + T+  NS+ N        +  LL      I   +++ + +
Sbjct  2027  -----VK-GGMPSGCSGTSIFNSMINNLI-----IRTLLLKTYKGIDLDHLKMIAY  2071


>sp|Q66479|POLG_HE71M Genome polyprotein OS=Human enterovirus 
71 (strain 7423/MS/87) OX=103922 PE=1 SV=3
Length=2193

 Score = 36.6 bits (83),  Expect = 1.4, Method: Composition-based stats.
 Identities = 35/238 (15%), Positives = 76/238 (32%), Gaps = 17/238 (7%)

Query  484   DGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMN  543
             +  C   + +   +L  SAG+P++  G  +      +  D   + +Y  +  +       
Sbjct  1829  EEACYGTDNLEAIDLHTSAGYPYSALGIKKRDILDPATRDVSKMKSYMDKYGLDLPYSTY  1888

Query  544   LKYAIS-----AKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGW  598
             +K  +       K ++R +   S+  ++  R     L +   A  G    +  S      
Sbjct  1889  VKDELRSLDKIKKGKSRLIEASSLNDSVYLRMTFGHLYEVFHANPGT---VTGSAVGCNP  1945

Query  599   HNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANE  658
                   +   +    L  +DY   D ++  +     +L +  +       +       N 
Sbjct  1946  DVFWSKLPILLPGS-LFAFDYSGYDASLSPV--WFRALEVVLREIGYSEEAVSLIEGINH  2002

Query  659   CAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA  716
                +      C        GG  SG + T+  NS+ N     T  +      D +++ 
Sbjct  2003  THHIYRNKTYCV------LGGMPSGCSGTSIFNSMINNIIIRTLLIKTFKGIDLDELN  2054


>sp|A4ZCW8|RDRP_ROTHW RNA-directed RNA polymerase OS=Rotavirus 
A (strain RVA/Human/United States/Wa/1974/G1P1A[8]) OX=10962 
PE=3 SV=1
Length=1088

 Score = 36.6 bits (83),  Expect = 1.5, Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 72/204 (35%), Gaps = 23/204 (11%)

Query  611  NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQ----VLSEM  666
            N  ++  D  + D +  N       +++     +  +   +  +  N   Q    ++   
Sbjct  513  NSMVLYTDVSQWDSSQHNTQPFRKGIIMGLDMLSNMTNDPKVVQTLNLYKQTQINLMDSY  572

Query  667  VMCGGSLYVKP---GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA--DKYVR  721
            V       +K    G  +SG+  T  ANS+ N+     A +  +LS   NK +   K +R
Sbjct  573  VQIPDGNVIKKIQYGAVASGEKQTKAANSIANL-----ALIKTVLSRIANKYSFITKIIR  627

Query  722  NLQHRLYECLYRNRDVDTDFVNEF-----YAYLRKHFSMMILSDDAVVCFNSTYASQGLV  776
                  Y  L  N DV    V +      Y Y R +  +  L     +     Y + G +
Sbjct  628  VDGDDNYAVLQFNTDVTKQMVQDVSNDVRYIYSRMNAKVKALVSTVGIEIAKRYIAGGKI  687

Query  777  ASIKNFKSVLYYQNNVFMSEAKCW  800
                 F++ +   NN    ++  W
Sbjct  688  F----FRAGINLLNNEKRGQSTQW  707


>sp|B1NKR3|RDRP_ROTAD RNA-directed RNA polymerase OS=Rotavirus 
A (strain RVA/Human/United States/D/1974/G1P1A[8]) OX=578831 
PE=3 SV=1
Length=1088

 Score = 36.6 bits (83),  Expect = 1.5, Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 72/204 (35%), Gaps = 23/204 (11%)

Query  611  NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQ----VLSEM  666
            N  ++  D  + D +  N       +++     +  +   +  +  N   Q    ++   
Sbjct  513  NSMVLYTDVSQWDSSQHNTQPFRKGIIMGLDMLSNMTNDPKVVQTLNLYKQTQINLMDSY  572

Query  667  VMCGGSLYVKP---GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA--DKYVR  721
            V       +K    G  +SG+  T  ANS+ N+     A +  +LS   NK +   K +R
Sbjct  573  VQIPDGNVIKKIQYGAVASGEKQTKAANSIANL-----ALIKTVLSRIANKYSFITKIIR  627

Query  722  NLQHRLYECLYRNRDVDTDFVNEF-----YAYLRKHFSMMILSDDAVVCFNSTYASQGLV  776
                  Y  L  N DV    V +      Y Y R +  +  L     +     Y + G +
Sbjct  628  VDGDDNYAVLQFNTDVTKQMVQDVSNDVRYIYSRMNAKVKALVSTVGIEIAKRYIAGGKI  687

Query  777  ASIKNFKSVLYYQNNVFMSEAKCW  800
                 F++ +   NN    ++  W
Sbjct  688  F----FRAGINLLNNEKRGQSTQW  707


>sp|P17699|RDRP_ROTPG RNA-directed RNA polymerase OS=Rotavirus 
A (strain RVA/Pig/United States/Gottfried/1983/G4P2B[6]) OX=10917 
PE=3 SV=1
Length=1088

 Score = 36.6 bits (83),  Expect = 1.5, Method: Composition-based stats.
 Identities = 40/204 (20%), Positives = 71/204 (35%), Gaps = 23/204 (11%)

Query  611  NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQ----VLSEM  666
            N  ++  D  + D +  N       +++        +   +  +  N   Q    ++   
Sbjct  513  NSMVLYTDVSQWDSSQHNTQPFRKGIIMGLDMLANMTNDPKVVQTLNLYKQTQINLMDSY  572

Query  667  VMCGGSLYVKP---GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA--DKYVR  721
            V       +K    G  +SG+  T  ANS+ N+     A +  +LS   NK +   K +R
Sbjct  573  VQIPDGDVIKKIQYGAVASGEKQTKAANSIANL-----ALIKTVLSRIANKYSFITKIIR  627

Query  722  NLQHRLYECLYRNRDVDTDFVNEF-----YAYLRKHFSMMILSDDAVVCFNSTYASQGLV  776
                  Y  L  N DV    V E      Y Y R +  +  L     +     Y + G +
Sbjct  628  VDGDDNYAVLQFNTDVTKQMVQEVSNDVRYIYSRMNAKVKALVSTVGIEIAKRYIAGGKI  687

Query  777  ASIKNFKSVLYYQNNVFMSEAKCW  800
                 F++ +   NN    ++  W
Sbjct  688  F----FRAGINLLNNEKRGQSTQW  707


>sp|B1NKU1|RDRP_ROTWI RNA-directed RNA polymerase OS=Rotavirus 
A (isolate RVA/Human/United States/WI61/1983/G9P1A[8]) OX=578830 
PE=3 SV=1
Length=1088

 Score = 36.6 bits (83),  Expect = 1.6, Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 72/204 (35%), Gaps = 23/204 (11%)

Query  611  NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQ----VLSEM  666
            N  ++  D  + D +  N       +++     +  +   +  +  N   Q    ++   
Sbjct  513  NSMVLYTDVSQWDSSQHNTQPFRKGIIMGLDMLSNMTNDPKVVQTLNLYKQTQINLMDSY  572

Query  667  VMCGGSLYVKP---GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA--DKYVR  721
            V       +K    G  +SG+  T  ANS+ N+     A +  +LS   NK +   K +R
Sbjct  573  VQIPDGNVIKKIQYGAVASGEKQTKAANSIANL-----ALIKTVLSRIANKYSFITKIIR  627

Query  722  NLQHRLYECLYRNRDVDTDFVNEF-----YAYLRKHFSMMILSDDAVVCFNSTYASQGLV  776
                  Y  L  N DV    V +      Y Y R +  +  L     +     Y + G +
Sbjct  628  VDGDDNYAVLQFNTDVTKQMVQDVSNDVRYIYSRMNAKVKALVSTVGIEIAKRYIAGGKI  687

Query  777  ASIKNFKSVLYYQNNVFMSEAKCW  800
                 F++ +   NN    ++  W
Sbjct  688  F----FRAGINLLNNEKRGQSTQW  707


>sp|Q30XF7|TGT_OLEA2 Queuine tRNA-ribosyltransferase OS=Oleidesulfovibrio 
alaskensis (strain ATCC BAA-1058 / DSM 17464 / G20) 
OX=207559 GN=tgt PE=3 SV=1
Length=377

 Score = 36.2 bits (82),  Expect = 1.6, Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 59/160 (37%), Gaps = 16/160 (10%)

Query  678  GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDV  737
            GG S G++ T   + +++    + A+    L   G  +      N    +++C+   R+ 
Sbjct  217  GGLSVGESKTEMMDILYHTAPMLPAHKPRYLMGVGTPLDIINGINAGIDMFDCVLPTRNA  276

Query  738  DTDFVNEFYA---YLRKHFSMMILSDDAVV-----CFNSTYASQGLVASIKNFKSVLYYQ  789
                +          R+ F+     DD  +     C+     S+  +  + + + +L Y+
Sbjct  277  RNGTLYTSAGKINIKRREFA----EDDGPLDPNCSCYTCRTFSRAYLRHLFHAQEILSYR  332

Query  790  NNVFMSEAKCWTETDLTKGPHEFCSQHTM-LVKQGDDYVY  828
             N   +        DL +G  E  +Q T    K   D +Y
Sbjct  333  LNSIHNLT---YFLDLVRGAREAIAQGTFAEYKSRYDAIY  369


>sp|P03303|POLG_HRV14 Genome polyprotein OS=Human rhinovirus 14 
OX=12131 PE=1 SV=3
Length=2179

 Score = 36.6 bits (83),  Expect = 1.7, Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 75/200 (38%), Gaps = 19/200 (10%)

Query  501   SAGFPFNKWG-KARLYYDSMSYEDQDALFAYTKRNV-IPTITQMNLKYAISAKNR---AR  555
             SAGFP+   G K R   +  + + +   F   K  + +P +T +  +     K R   +R
Sbjct  1834  SAGFPYVSLGIKKRDILNKETQDTEKMKFYLDKYGIDLPLVTYIKDELRSVDKVRLGKSR  1893

Query  556   TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM  615
              +   S+  ++  R     L K+     G   V+  S            V   + + HLM
Sbjct  1894  LIEASSLNDSVNMRMKLGNLYKAFHQNPG---VLTGSAVGCDPDVFWS-VIPCLMDGHLM  1949

Query  616   GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV  675
              +DY   D ++  +  +    VL +      SL      + N          +    +YV
Sbjct  1950  AFDYSNFDASLSPVWFVCLEKVLTKLGFAGSSLIQS---ICNTHH-------IFRDEIYV  1999

Query  676   KPGGTSSGDATTAYANSVFN  695
               GG  SG + T+  NS+ N
Sbjct  2000  VEGGMPSGCSGTSIFNSMIN  2019


>sp|P22055|POLG_CXA21 Genome polyprotein OS=Coxsackievirus A21 
(strain Coe) OX=12070 PE=1 SV=3
Length=2206

 Score = 36.2 bits (82),  Expect = 1.8, Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 85/236 (36%), Gaps = 29/236 (12%)

Query  498   LDKSAGFPFNKWGKAR---LYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNR-  553
             L  SAG+P+   GK +   L   +   ++   L   T    +P +T +  K  + +K + 
Sbjct  1857  LSTSAGYPYVAMGKKKRDILDKQTRDTKEMQRLLD-TYGINLPLVTYV--KDELRSKTKV  1913

Query  554   ----ARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDV  609
                 +R +   S+  ++  R     L  +     G  VV G++   G   ++  +    +
Sbjct  1914  EQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPG--VVTGSA--VGCDPDLFWSKIPVL  1969

Query  610   ENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC  669
                 L  +DY   D ++        +L +  +     +    +    N    +      C
Sbjct  1970  MEEKLFAFDYTGYDASLSPA--WFEALKMVLEKIGFGNRVD-YIDYLNHSHHLYKNKTYC  2026

Query  670   GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQH  725
                  VK GG  SG + T+  NS+ N        +  LL      I   +++ + +
Sbjct  2027  -----VK-GGMPSGCSGTSIFNSMINNLI-----IRTLLLRTYKGIDLDHLKMIAY  2071


>sp|P03300|POLG_POL1M Genome polyprotein OS=Poliovirus type 1 
(strain Mahoney) OX=12081 PE=1 SV=3
Length=2209

 Score = 36.2 bits (82),  Expect = 1.8, Method: Composition-based stats.
 Identities = 42/236 (18%), Positives = 78/236 (33%), Gaps = 29/236 (12%)

Query  498   LDKSAGFPFNKWGKAR---LYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNR-  553
             L  SAG+P+   GK +   L   +   ++   L   T    +P +T +  K  + +K + 
Sbjct  1860  LSTSAGYPYVAMGKKKRDILNKQTRDTKEMQKLLD-TYGINLPLVTYV--KDELRSKTKV  1916

Query  554   ----ARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDV  609
                 +R +   S+  ++  R     L  +     G   VI  S                +
Sbjct  1917  EQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPG---VITGSAVGCDPDLFWS-KIPVL  1972

Query  610   ENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC  669
                 L  +DY   D ++        +L +  +          +    N    +      C
Sbjct  1973  MEEKLFAFDYTGYDASLSPA--WFEALKMVLEKIGFGDRVD-YIDYLNHSHHLYKNKTYC  2029

Query  670   GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQH  725
                  VK GG  SG + T+  NS+ N        +  LL      I   +++ + +
Sbjct  2030  -----VK-GGMPSGCSGTSIFNSMINNLI-----IRTLLLKTYKGIDLDHLKMIAY  2074


>sp|P06210|POLG_POL2L Genome polyprotein OS=Poliovirus type 2 
(strain Lansing) OX=12084 PE=1 SV=3
Length=2207

 Score = 36.2 bits (82),  Expect = 1.8, Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 84/236 (36%), Gaps = 29/236 (12%)

Query  498   LDKSAGFPFNKWGKAR---LYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNR-  553
             L  SAG+P+   GK +   L   +   ++   L   T    +P +T +  K  + +K + 
Sbjct  1858  LSTSAGYPYVAMGKKKRDILNKQTRDTKEMQRLLD-TYGINLPLVTYV--KDELRSKTKV  1914

Query  554   ----ARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDV  609
                 +R +   S+  ++  R     L  +     G  VV G++   G   ++  +    +
Sbjct  1915  EQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPG--VVTGSA--VGCDPDLFWSKIPVL  1970

Query  610   ENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC  669
                 L  +DY   D ++        +L +  +          +    N    +      C
Sbjct  1971  MEEKLFAFDYTGYDASLSPA--WFEALKMVLEKIGFGDRVD-YIDYLNHSHHLYKNKTYC  2027

Query  670   GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQH  725
                  VK GG  SG + T+  NS+ N        +  LL      I   +++ + +
Sbjct  2028  -----VK-GGMPSGCSGTSIFNSMINNLI-----IRTLLLKTYKGIDLDHLKMIAY  2072


>sp|P06209|POLG_POL32 Genome polyprotein OS=Poliovirus type 3 
(strain 23127) OX=12087 PE=3 SV=3
Length=2206

 Score = 36.2 bits (82),  Expect = 1.9, Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 84/236 (36%), Gaps = 29/236 (12%)

Query  498   LDKSAGFPFNKWGKAR---LYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNR-  553
             L  SAG+P+   GK +   L   +   ++   L   T    +P +T +  K  + +K + 
Sbjct  1857  LSTSAGYPYVTMGKKKRDILNKQTRDTKEMQRLLD-TYGINLPLVTYV--KDELRSKTKV  1913

Query  554   ----ARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDV  609
                 +R +   S+  ++  R     L  +     G  VV G++   G   ++  +    +
Sbjct  1914  EQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPG--VVTGSA--VGCDPDLFWSKIPVL  1969

Query  610   ENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC  669
                 L  +DY   D ++        +L +  +          +    N    +      C
Sbjct  1970  MEEKLFAFDYTGYDASLSPA--WFEALKMVLEKIGFGDRVD-YIDYLNHSHHLYKNKTYC  2026

Query  670   GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQH  725
                  VK GG  SG + T+  NS+ N        +  LL      I   +++ + +
Sbjct  2027  -----VK-GGMPSGCSGTSIFNSMINNLI-----IRTLLLKTYKGIDLDHLKMIAY  2071


>sp|P03301|POLG_POL1S Genome polyprotein OS=Poliovirus type 1 
(strain Sabin) OX=12082 PE=1 SV=3
Length=2209

 Score = 36.2 bits (82),  Expect = 2.0, Method: Composition-based stats.
 Identities = 42/236 (18%), Positives = 78/236 (33%), Gaps = 29/236 (12%)

Query  498   LDKSAGFPFNKWGKAR---LYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNR-  553
             L  SAG+P+   GK +   L   +   ++   L   T    +P +T +  K  + +K + 
Sbjct  1860  LSTSAGYPYVAMGKKKRDILNKQTRDTKEMQKLLD-TYGINLPLVTYV--KDELRSKTKV  1916

Query  554   ----ARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDV  609
                 +R +   S+  ++  R     L  +     G   VI  S                +
Sbjct  1917  EQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPG---VITGSAVGCDPDLFWS-KIPVL  1972

Query  610   ENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC  669
                 L  +DY   D ++        +L +  +          +    N    +      C
Sbjct  1973  MEEKLFAFDYTGYDASLSPA--WFEALEMVLEKIGFGDRVD-YIDYLNHSHHLYKNKTYC  2029

Query  670   GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQH  725
                  VK GG  SG + T+  NS+ N        +  LL      I   +++ + +
Sbjct  2030  -----VK-GGMPSGCSGTSIFNSMINNLI-----IRTLLLKTYKGIDLDHLKMIAY  2074


>sp|B1NKT7|RDRP_ROTHT RNA-directed RNA polymerase OS=Rotavirus 
A (strain RVA/Human/United Kingdom/ST3/1975/G4P2A[6]) OX=10960 
PE=3 SV=1
Length=1088

 Score = 35.8 bits (81),  Expect = 2.3, Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 72/204 (35%), Gaps = 23/204 (11%)

Query  611  NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQ----VLSEM  666
            N  ++  D  + D +  N       +++     +  +   +  +  N   Q    ++   
Sbjct  513  NSMVLYTDVSQWDSSQHNTQPFRKGIIMGLDILSNMTNDPKVVQTLNLYKQTQINLMDSY  572

Query  667  VMCGGSLYVKP---GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA--DKYVR  721
            V       +K    G  +SG+  T  ANS+ N+     A +  +LS   NK +   K +R
Sbjct  573  VQIPDGNVIKKIQYGAVASGEKQTKAANSIANL-----ALIKTVLSRIANKYSFITKIIR  627

Query  722  NLQHRLYECLYRNRDVDTDFVNEF-----YAYLRKHFSMMILSDDAVVCFNSTYASQGLV  776
                  Y  L  N DV    V +      Y Y R +  +  L     +     Y + G +
Sbjct  628  VDGDDNYAVLQFNTDVTKQMVQDVSNDVRYIYSRMNAKVKALVSTVGIEIAKRYIAGGKI  687

Query  777  ASIKNFKSVLYYQNNVFMSEAKCW  800
                 F++ +   NN    ++  W
Sbjct  688  F----FRAGINLLNNEKRGQSTQW  707


>sp|Q9QNB3|RDRP_ROTHK RNA-directed RNA polymerase OS=Rotavirus 
A (strain RVA/Human/Japan/KU/1995/G1P1A[8]) OX=10952 PE=2 SV=1
Length=1088

 Score = 35.8 bits (81),  Expect = 2.3, Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 74/204 (36%), Gaps = 23/204 (11%)

Query  611  NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMV---  667
            N  ++  D  + D +  N       +++     +  +   +  +  N   Q    ++   
Sbjct  513  NSMVLYTDVSQWDSSQHNTQPFRKGIIMGLDMLSNMTNDPKVVQALNLYKQTQINLMDSY  572

Query  668  --MCGGSLYVKP--GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA--DKYVR  721
              +  G++  K   G  +SG+  T  ANS+ N+     A +  +LS   NK +   K +R
Sbjct  573  VQIPDGNVIKKNQYGAVASGEKQTKAANSIANL-----ALIKTVLSRIANKYSFITKIIR  627

Query  722  NLQHRLYECLYRNRDVDTDFVNEF-----YAYLRKHFSMMILSDDAVVCFNSTYASQGLV  776
                  Y  L  N D+    + +      Y Y R +  +  L     +     Y + G +
Sbjct  628  VSGDDNYAVLQFNTDLTKQMIQDVSNDVRYIYFRMNAKVKALVSTVGIEIAKRYLAGGKI  687

Query  777  ASIKNFKSVLYYQNNVFMSEAKCW  800
                 F++ +   NN    ++  W
Sbjct  688  F----FRAGINLLNNEKRGQSTQW  707


>sp|P36290|POLG_CXA24 Genome polyprotein OS=Coxsackievirus A24 
(strain EH24/70) OX=36404 PE=3 SV=3
Length=2214

 Score = 36.2 bits (82),  Expect = 2.3, Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 84/236 (36%), Gaps = 29/236 (12%)

Query  498   LDKSAGFPFNKWGKAR---LYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNR-  553
             L  SAG+P+   GK +   L   +   ++   L   T    +P +T +  K  + +K + 
Sbjct  1865  LSTSAGYPYVAMGKKKRDILNKQTRDTKEMQRLLD-TYGINLPLVTYV--KDELRSKTKV  1921

Query  554   ----ARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDV  609
                 +R +   S+  ++  R     L  +     G  VV G++   G   ++  +    +
Sbjct  1922  EQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPG--VVTGSA--VGCDPDLFWSKIPVL  1977

Query  610   ENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC  669
                 L  +DY   D ++        +L +  +          +    N    +      C
Sbjct  1978  MEEKLFAFDYTGYDASLSPA--WFEALKMVLEKIGFGDRVD-YIDYLNHSHHLYKNKTYC  2034

Query  670   GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQH  725
                  VK GG  SG + T+  NS+ N        +  LL      I   +++ + +
Sbjct  2035  -----VK-GGMPSGCSGTSIFNSMINNLI-----IRTLLLKTYKGIDLDHLKMIAY  2079


>sp|C6KEF6|POLG_HKV1 Genome polyprotein OS=Human klassevirus 1 
OX=655603 PE=1 SV=1
Length=2370

 Score = 36.2 bits (82),  Expect = 2.3, Method: Composition-based stats.
 Identities = 42/215 (20%), Positives = 79/215 (37%), Gaps = 19/215 (9%)

Query  498   LDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVI---PTITQMNLK--YAISAKN  552
             L +S G+P+   G++R             L      +V      I Q  LK     +AK 
Sbjct  2004  LSQSPGYPWTTQGRSRRSLFDEDGNPVPEL-QKAIDSVWDGGSYIYQSFLKDELRPTAKA  2062

Query  553   RA---RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDV  609
             RA   R V    I + +  R+    L+  +    G  +  G++       +  +  +S  
Sbjct  2063  RAGKTRIVEAAPIQAIVVGRRLLGSLINHLQ---GNPLQYGSAVGCNPDIHWTQIFHSLT  2119

Query  610   ENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC  669
                ++   DY   D  +P       S++L+   +   S S +  R+ +  +   +   + 
Sbjct  2120  PFSNVWSIDYSCFDATIP-------SVLLSAIASRIASRSDQPGRVLDYLSYTTTSYHVY  2172

Query  670   GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANV  704
                 Y   GG  SG   T+  N++ N    ++A +
Sbjct  2173  DSLWYTMVGGNPSGCVGTSILNTIANNIAIISAMM  2207


>sp|Q8V5E0|POL1_BRAV RNA1 polyprotein OS=Blackcurrant reversion 
association virus OX=65743 PE=3 SV=1
Length=2094

 Score = 35.8 bits (81),  Expect = 2.4, Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 57/155 (37%), Gaps = 8/155 (5%)

Query  545   KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT  604
             K  I  K R  ++  +     +  +  H      +         +G + +   W  +L+ 
Sbjct  1591  KICIKPKTRLFSILPLEFNLLLRKKFLHFSSSLQMHRDT-LPTQVGVNPYSREWGELLQR  1649

Query  605   VYSDVENPHLMGWDYPKCDRAMP-NMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL  663
             +    ++   +  DY   D  +   +L  + +++         S + +  RL N    ++
Sbjct  1650  L--RAQSSVAINCDYASFDGLLTGQILEKIGTMI---NKMYIGSEASKIQRL-NLLMSIV  1703

Query  664   SEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQ  698
             +   +CG  +Y    G  SG A T   NS+FN   
Sbjct  1704  NRKSICGARVYEVRAGIPSGCALTVLLNSIFNEFL  1738


>sp|Q09725|MIS4_SCHPO Sister chromatid cohesion protein mis4 OS=Schizosaccharomyces 
pombe (strain 972 / ATCC 24843) OX=284812 
GN=mis4 PE=1 SV=2
Length=1587

 Score = 35.4 bits (80),  Expect = 3.0, Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 5/94 (5%)

Query  370  ELLVYAADPAMHAASGNLLLDKRTT----CFSVAALTNNVAFQTVKPGNFNKDFYDFAVS  425
             L++   +     +S N  LD  +       ++  L+         P NFN D   F  S
Sbjct  619  NLVMTVTNDKQAVSSKNAALDLISLIVNKVLALFDLSLFEKHNIPAPTNFN-DIISFIPS  677

Query  426  KGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYN  459
                 E S V   HF+F   G+ ++ +   Y YN
Sbjct  678  ITRLNELSQVSFNHFYFLCKGDISLENILPYNYN  711


>sp|P11398|PYR1_MASLA Phycobilisome 32.1 kDa linker polypeptide, 
phycocyanin-associated, rod OS=Mastigocladus laminosus OX=83541 
GN=cpcC PE=1 SV=3
Length=286

 Score = 34.6 bits (78),  Expect = 3.5, Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 11/119 (9%)

Query  681  SSGDATTAYANSVF------NICQAVTANVNA-LLSTDGNKIADKYVRNLQHRLYECLYR  733
            +S +   A  N+V+      +   A    V+A  L  DGN    ++VR++       LY+
Sbjct  27   ASREEVEAVINAVYRHVLGNDYIMASERLVSAESLLRDGNLTVREFVRSVAK---SELYK  83

Query  734  NRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNST-YASQGLVASIKNFKSVLYYQNN  791
             +     F   F     KH       D++ + F+   Y ++G  A I ++   + YQNN
Sbjct  84   KKFFYNSFQTRFIELNYKHLLGRAPYDESEIVFHLDLYQNKGYDAEIDSYIDSVEYQNN  142


>sp|B9E0V5|RSMH_CLOK1 Ribosomal RNA small subunit methyltransferase 
H OS=Clostridium kluyveri (strain NBRC 12016) OX=583346 
GN=rsmH PE=3 SV=1
Length=309

 Score = 34.3 bits (77),  Expect = 4.5, Method: Composition-based stats.
 Identities = 17/82 (21%), Positives = 32/82 (39%), Gaps = 3/82 (4%)

Query  542  MNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAA-TRGATVVIGTSKFYGGWHN  600
            + LK+        RT   + I      +   + +   +A    G  + I T  F+     
Sbjct  190  IPLKFQKEGHPAKRTFQAIRIEVNEELKILDKAVEDGVANLNTGGRIAIIT--FHSLEDR  247

Query  601  MLKTVYSDVENPHLMGWDYPKC  622
            ++K+ +  +ENP     D+P C
Sbjct  248  IIKSKFKMLENPCTCPADFPIC  269


>sp|B1KEK5|PYRC_SHEWM Dihydroorotase OS=Shewanella woodyi (strain 
ATCC 51908 / MS32) OX=392500 GN=pyrC PE=3 SV=1
Length=344

 Score = 34.6 bits (78),  Expect = 4.6, Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 80/216 (37%), Gaps = 26/216 (12%)

Query  443  AQDGNAAISDYDYYRYNLPTMCDIRQLLFVV-EVVDKYFDCYDGGCINANQVIVNNLDKS  501
              + +AA+   D       TM +I  LL V  EV + + D +D   +     I  NL + 
Sbjct  105  TTNSDAAVKGLDALFPIFETMAEIGMLLLVHGEVTESHIDIFDREAL----FIERNLSRI  160

Query  502  AGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGV-  560
                 + + + ++ ++ ++ ++          NV  TIT  +L            V GV 
Sbjct  161  ----VDAFPQLKVVFEHITTKEAAEFVTSASDNVAATITPQHLLL----NRNDLLVGGVR  212

Query  561  --SICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWD  618
              + C  +  R  HQ+ L++  AT       G+SKF+ G  +     +         G  
Sbjct  213  PHNFCLPVLKRNIHQEALRAAVAT-------GSSKFFLGTDSAPHEKHRKESACGCAGC-  264

Query  619  YPKCDRAMPNMLRIMASL-VLARKHTTCCSLSHRFY  653
            Y     A+    ++   L V+ +      +    FY
Sbjct  265  YSAWS-ALELYAQVFDDLGVIEKLEGFASTHGPDFY  299


>sp|P17468|RDRP_ROTRF RNA-directed RNA polymerase OS=Rotavirus 
A (strain RVA/Cow/France/RF/1975/G6P6[1]) OX=10933 PE=1 SV=1
Length=1088

 Score = 35.0 bits (79),  Expect = 4.6, Method: Composition-based stats.
 Identities = 38/204 (19%), Positives = 70/204 (34%), Gaps = 23/204 (11%)

Query  611  NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQ----VLSEM  666
            N  ++  D  + D +  N       +++        +   R  +  N   Q    ++   
Sbjct  513  NSMVLYTDVSQWDSSQHNTQPFRKGIIMGLDMLANMTNDARVIQTLNLYKQTQINLMDSY  572

Query  667  VMCGGSLYVKP---GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA--DKYVR  721
            V       +K    G  +SG+  T  ANS+ N+     A +  +LS   NK +   K +R
Sbjct  573  VQIPDGNVIKKIQYGAVASGEKQTKAANSIANL-----ALIKTVLSRISNKYSFATKIIR  627

Query  722  NLQHRLYECLYRNRDVDTDFVNEFY-----AYLRKHFSMMILSDDAVVCFNSTYASQGLV  776
                  Y  L  N +V    V +        Y R +  +  L     +     Y + G +
Sbjct  628  VDGDDNYAVLQFNTEVTEQMVQDVSNDVRETYARMNAKVKALVSTVGIEIAKRYIAGGKI  687

Query  777  ASIKNFKSVLYYQNNVFMSEAKCW  800
                 F++ +   NN    ++  W
Sbjct  688  F----FRAGINLLNNEKRGQSTQW  707


>sp|Q82081|POLG_HRV3 Genome polyprotein OS=Human rhinovirus 3 
OX=44130 PE=1 SV=4
Length=2178

 Score = 35.0 bits (79),  Expect = 4.6, Method: Composition-based stats.
 Identities = 46/232 (20%), Positives = 79/232 (34%), Gaps = 28/232 (12%)

Query  501   SAGFPFNKWGKARLYYDSMSYEDQDA---LFAYTKRNV-IPTITQMNLKYAISAKNR---  553
             SAG+P+   G  +   D ++ E QD     F   K  + +P +T +  +     K R   
Sbjct  1833  SAGYPYVSLGIKKR--DILNKETQDVEKMKFYLDKYGIDLPLVTYIKDELRSVDKVRLGK  1890

Query  554   ARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPH  613
             +R +   S+  ++  R     L K+     G   +I  S            V   + + H
Sbjct  1891  SRLIEASSLNDSVNMRMKLGNLYKAFHQNPG---IITESAVGCDPDVFWS-VIPCLMDGH  1946

Query  614   LMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSL  673
             LM +DY   D ++  +      L            S     + N          +    +
Sbjct  1947  LMAFDYSNFDASLSPV--WFECLEKVLNKLGFKQPS-LIQSICNTHH-------IFRDEI  1996

Query  674   YVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQH  725
             Y   GG  SG + T+  NS+ N        +  L+      I    +R L +
Sbjct  1997  YRVEGGMPSGCSGTSIFNSMINNII-----IRTLILDAYKGIDLDSLRILAY  2043


>sp|B1NKS9|RDRP_ROTHP RNA-directed RNA polymerase OS=Rotavirus 
A (strain RVA/Human/United States/P/1974/G3P1A[8]) OX=10957 
PE=3 SV=1
Length=1088

 Score = 35.0 bits (79),  Expect = 4.8, Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 72/204 (35%), Gaps = 23/204 (11%)

Query  611  NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQ----VLSEM  666
            N  ++  D  + D +  N       +++     +  +   +  +  N   Q    ++   
Sbjct  513  NSMVLYTDVSQWDSSQHNTQPFRKGIIMGLDMLSNMTNDPKVAQTLNLYKQTQINLMDSY  572

Query  667  VMCGGSLYVKP---GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA--DKYVR  721
            V       +K    G  +SG+  T  ANS+ N+     A +  +LS   NK +   K +R
Sbjct  573  VQIPDGNVIKKIQYGAVASGEKQTKAANSIANL-----ALIKMVLSRIANKYSFITKIIR  627

Query  722  NLQHRLYECLYRNRDVDTDFVNEF-----YAYLRKHFSMMILSDDAVVCFNSTYASQGLV  776
                  Y  L  N DV    V +      Y Y R +  +  L     +     Y + G +
Sbjct  628  VDGDDNYAVLQFNTDVTKQMVQDVSNDVRYIYSRMNAKVKALVSTVGIEIAKRYIAGGKI  687

Query  777  ASIKNFKSVLYYQNNVFMSEAKCW  800
                 F++ +   NN    ++  W
Sbjct  688  F----FRAGINLLNNEKRGQSTQW  707


>sp|Q6W8W4|POL1_RRVC RNA1 polyprotein OS=Raspberry ringspot virus 
(strain cherry) OX=281921 PE=3 SV=1
Length=2367

 Score = 34.6 bits (78),  Expect = 5.4, Method: Composition-based stats.
 Identities = 26/115 (23%), Positives = 46/115 (40%), Gaps = 10/115 (9%)

Query  582   TRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARK  641
             +    +V+G+ +    W ++   +    +N  +   DY K D  M   +    + +  R 
Sbjct  1807  SSQVGIVVGSRE----WDDLAARL-RSKKNDKMYCCDYSKFDGLMTPQIVHAITNIYERM  1861

Query  642   HTTCCSLSH-RFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFN  695
              +    +S  R   L   C ++     +CG  +Y    G  SG A T   NS+FN
Sbjct  1862  FSGNDGMSQFRQNLLMGICNRI----SICGSQVYRVEAGMPSGFALTVDFNSIFN  1912


>sp|Q3ZK55|RDRP_ROT41 RNA-directed RNA polymerase OS=Rotavirus 
A (isolate RVA/Human/Belgium/B4106/2000/G3P11[14]) OX=578843 
PE=3 SV=1
Length=1088

 Score = 34.3 bits (77),  Expect = 6.5, Method: Composition-based stats.
 Identities = 36/204 (18%), Positives = 70/204 (34%), Gaps = 23/204 (11%)

Query  611  NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQ----VLSEM  666
            N  ++  D  + D +  N       +++        +   R  +  N   Q    ++   
Sbjct  513  NAMVLYTDVSQWDSSQHNTQPFRKGIIMGLDMLANMTNDARVIQTLNLYKQTQINLMDSY  572

Query  667  VMCGGSLYVKP---GGTSSGDATTAYANSVFNICQAVTANVNALLS--TDGNKIADKYVR  721
            V       +K    G  +SG+  T  ANS+ N+     A +  +LS  ++ +    K +R
Sbjct  573  VQIPDGNIIKKIQYGAVASGEKQTKAANSIANL-----ALIKTVLSRISNKHSFVTKIIR  627

Query  722  NLQHRLYECLYRNRDVDTDFVNEFY-----AYLRKHFSMMILSDDAVVCFNSTYASQGLV  776
                  Y  L  N +V    V +        Y R +  +  L     +     Y + G +
Sbjct  628  VDGDDNYAVLQFNTEVTKQMVQDVSNDVRETYARMNAKVKALVSTVGIEIAKRYIAGGKI  687

Query  777  ASIKNFKSVLYYQNNVFMSEAKCW  800
                 F++ +   NN    ++  W
Sbjct  688  F----FRAGINLLNNEKRGQSTQW  707


>sp|A7J398|RDRP_ROTBN RNA-directed RNA polymerase OS=Rotavirus 
A (strain RVA/Cow/United States/NCDV-Lincoln/1969/G6P6[1]) 
OX=36439 PE=3 SV=1
Length=1088

 Score = 34.3 bits (77),  Expect = 7.0, Method: Composition-based stats.
 Identities = 38/204 (19%), Positives = 70/204 (34%), Gaps = 23/204 (11%)

Query  611  NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQ----VLSEM  666
            N  ++  D  + D +  N       +++        +   R  +  N   Q    ++   
Sbjct  513  NSMVLYTDVSQWDSSQHNTQPFRKGIIMGLDMLANMTNDARVIQTLNLYKQTQINLMDSY  572

Query  667  VMCGGSLYVKP---GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA--DKYVR  721
            V       +K    G  +SG+  T  ANS+ N+     A +  +LS   NK +   K +R
Sbjct  573  VQIPDGNVIKKIQYGAVASGEKQTKAANSIANL-----ALIKTVLSRISNKYSFATKIIR  627

Query  722  NLQHRLYECLYRNRDVDTDFVNEFY-----AYLRKHFSMMILSDDAVVCFNSTYASQGLV  776
                  Y  L  N +V    V +        Y R +  +  L     +     Y + G +
Sbjct  628  VDGDDNYAVLQFNTEVTKQMVQDVSNDVRETYARMNAKVKALVSTVGIEIAKRYIAGGKI  687

Query  777  ASIKNFKSVLYYQNNVFMSEAKCW  800
                 F++ +   NN    ++  W
Sbjct  688  F----FRAGINLLNNEKRGQSTQW  707


>sp|P21615|RDRP_ROTBU RNA-directed RNA polymerase OS=Rotavirus 
A (strain RVA/Cow/United Kingdom/UK/1975/G6P7[5]) OX=10934 
PE=2 SV=1
Length=1088

 Score = 34.3 bits (77),  Expect = 7.1, Method: Composition-based stats.
 Identities = 38/204 (19%), Positives = 70/204 (34%), Gaps = 23/204 (11%)

Query  611  NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQ----VLSEM  666
            N  ++  D  + D +  N       +++        +   R  +  N   Q    ++   
Sbjct  513  NAMVLYTDVSQWDSSQHNTQPFRKGIIMGLDMLANMTNDARVIQTLNLYKQTQINLMDSY  572

Query  667  VMCGGSLYVKP---GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA--DKYVR  721
            V       +K    G  +SG+  T  ANS+ N+     A +  +LS   NK +   K +R
Sbjct  573  VQIPDGNVIKKIQYGAVASGEKQTKAANSIANL-----ALIKTVLSRISNKYSFATKIIR  627

Query  722  NLQHRLYECLYRNRDVDTDFVNEFY-----AYLRKHFSMMILSDDAVVCFNSTYASQGLV  776
                  Y  L  N +V    V +        Y R +  +  L     +     Y + G +
Sbjct  628  VDGDDNYAVLQFNTEVTKQMVQDVSNDVRETYARMNAKVKALVSTVGIEIAKRYIAGGKI  687

Query  777  ASIKNFKSVLYYQNNVFMSEAKCW  800
                 F++ +   NN    ++  W
Sbjct  688  F----FRAGINLLNNEKRGQSTQW  707


>sp|B2BMF7|RDRP_ROTW3 RNA-directed RNA polymerase OS=Rotavirus 
A (strain RVA/Cow/United States/WC3/1981/G6P7[5]) OX=578828 
PE=3 SV=1
Length=1088

 Score = 34.3 bits (77),  Expect = 7.6, Method: Composition-based stats.
 Identities = 38/204 (19%), Positives = 70/204 (34%), Gaps = 23/204 (11%)

Query  611  NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQ----VLSEM  666
            N  ++  D  + D +  N       +++        +   R  +  N   Q    ++   
Sbjct  513  NSMVLYTDVSQWDSSQHNTQPFRKGIIMGLDMLANMTNDARVIQTLNLYKQTQINLMDSY  572

Query  667  VMCGGSLYVKP---GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA--DKYVR  721
            V       +K    G  +SG+  T  ANS+ N+     A +  +LS   NK +   K +R
Sbjct  573  VQIPDGDVIKKIQYGAVASGEKQTKAANSIANL-----ALIKTVLSRISNKYSFATKIIR  627

Query  722  NLQHRLYECLYRNRDVDTDFVNEFY-----AYLRKHFSMMILSDDAVVCFNSTYASQGLV  776
                  Y  L  N +V    V +        Y R +  +  L     +     Y + G +
Sbjct  628  VDGDDNYAVLQFNTEVTKQMVQDVSNDVRETYARMNAKVKALVSTVGIEIAKRYIAGGKI  687

Query  777  ASIKNFKSVLYYQNNVFMSEAKCW  800
                 F++ +   NN    ++  W
Sbjct  688  F----FRAGINLLNNEKRGQSTQW  707


>sp|A4G060|MFNA_METM5 Probable L-tyrosine/L-aspartate decarboxylase 
OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) 
OX=402880 GN=mfnA PE=3 SV=1
Length=384

 Score = 33.9 bits (76),  Expect = 8.0, Method: Composition-based stats.
 Identities = 32/135 (24%), Positives = 51/135 (38%), Gaps = 25/135 (19%)

Query  91   KDCPAVAKHDFFKFRIDGDMVP-HISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTY  149
            K    + +   F F    DM+  ++ R  LT+Y   D+ + +R + E + + +  I+   
Sbjct  107  KQNIIIPETAHFSFDKARDMMDLNVVRPPLTEYFTMDVKF-IRDYVEDSKNEISGIVGIA  165

Query  150  NCCDDDYFNK--KDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTL  207
             C +    +   +     VEN  +L V A  G  V       + F D             
Sbjct  166  GCTELGSIDNIYELSKIAVENDILLHVDAAFGGFV-------IPFLD-------------  205

Query  208  DNQDLNGNWYDFGDF  222
            D   L G  YDF DF
Sbjct  206  DKYKLKGYNYDF-DF  219


>sp|A6VIC0|MFNA_METM7 Probable L-tyrosine/L-aspartate decarboxylase 
OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) 
OX=426368 GN=mfnA PE=3 SV=1
Length=384

 Score = 33.9 bits (76),  Expect = 8.1, Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 65/176 (37%), Gaps = 28/176 (16%)

Query  96   VAKHDFFKFRIDGDMVP-HISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDD  154
            + +   F F    DM+  ++ R  LT+Y   D+ + +R + E + + +  I+    C + 
Sbjct  112  IPETAHFSFDKARDMMDLNVVRPPLTEYFTMDVKF-IRDYIEDSKNEISGIVGIAGCTEL  170

Query  155  DYFNK--KDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDL  212
               +   +     VEN  +L V A  G  V       + F D             D   L
Sbjct  171  GSIDNIYELSKIAVENDILLHVDAAFGGFV-------IPFLD-------------DKYKL  210

Query  213  NGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDT-DLTKPYIK  267
             G  YDF DF  +  G     +D +   L PI          +  +  D+  PY+ 
Sbjct  211  KGYNYDF-DF--SLNGVSSITIDPHKMGLAPISAGGILFKNNTFKNYLDVDAPYLT  263


>sp|A3DSK5|RDRP_ROTHL RNA-directed RNA polymerase OS=Rotavirus 
A (strain RVA/Human/Philippines/L26/1987/G12P1B[4]) OX=10953 
PE=3 SV=1
Length=1088

 Score = 34.3 bits (77),  Expect = 8.1, Method: Composition-based stats.
 Identities = 38/204 (19%), Positives = 70/204 (34%), Gaps = 23/204 (11%)

Query  611  NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQ----VLSEM  666
            N  ++  D  + D +  N       +++        +   R  +  N   Q    +++  
Sbjct  513  NAMVLYTDVSQWDSSQHNTQPFRKGIIMGLDILANMTNDTRVIQTLNLYKQTQINLMNSY  572

Query  667  VMCGGSLYVKP---GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA--DKYVR  721
            V       +K    G  +SG+  T  ANS+ N+     A +  +LS   NK +   K +R
Sbjct  573  VQIPDGNIIKKIQYGAVASGEKQTKAANSIANL-----ALIKTVLSRISNKYSFVTKIIR  627

Query  722  NLQHRLYECLYRNRDVDTDFVNEFY-----AYLRKHFSMMILSDDAVVCFNSTYASQGLV  776
                  Y  L  N +V    V +        Y R +  +  L     +     Y + G +
Sbjct  628  VDGDDNYAVLQFNTEVTKQMVQDVSNDVRETYARMNAKVKALVSTVGIEIAKRYIAGGKI  687

Query  777  ASIKNFKSVLYYQNNVFMSEAKCW  800
                 F++ +   NN    +   W
Sbjct  688  F----FRAGINLLNNEKRGQNTQW  707


>sp|Q288N7|POLG_BECN1 Genome polyprotein OS=Bovine enteric calicivirus 
Newbury agent-1 (isolate Bovine/UK/Newbury1/1976) OX=331642 
GN=ORF1 PE=3 SV=1
Length=2210

 Score = 34.3 bits (77),  Expect = 8.7, Method: Composition-based stats.
 Identities = 29/156 (19%), Positives = 49/156 (31%), Gaps = 21/156 (13%)

Query  550   AKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGA-TVVIGT----SKFYGGWHNMLKT  604
             A+ + R + G      +        +  ++        + +G     +     W   L+ 
Sbjct  1318  AEGKRRLIWGADARVALIASAALTPVANALKTVTNLLPIQVGVDPSSANCVSSWVGRLQR  1377

Query  605   VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS  664
                     H +  DY K D  M  ++  +A  +L     TC S S R        AQ L 
Sbjct  1378  H------DHCLELDYSKWDSTMSPVIINIAIDILC---NTCGSDSLRM-----AVAQTLK  1423

Query  665   E--MVMCGGSLYVKPGGTSSGDATTAYANSVFNICQ  698
                  +  G       G  SG   T+  NS+ +   
Sbjct  1424  SRPTALVEGVSVPTKSGLPSGMPFTSQINSIVHWIL  1459


>sp|Q68T42|POLG_HED68 Genome polyprotein OS=Human enterovirus 
D68 OX=42789 PE=1 SV=1
Length=2188

 Score = 33.9 bits (76),  Expect = 9.4, Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 86/239 (36%), Gaps = 30/239 (13%)

Query  474   EVVDKYFDCYDGGCINANQVIVNN------------LDKSAGFPFNKWGKA-RLYYDSMS  520
             E VD Y  C +   I+ + + + N            L  SAGFP+   GK  R  ++  +
Sbjct  1803  EAVDHYVGCLEPLDISVDPIPLENAMYGMEGLEALDLTTSAGFPYLLQGKKKRDIFNRQT  1862

Query  521   YEDQDALFAYTKRNV-IPTITQM---NLKYAISAKNRARTVAGVSICSTMTNRQFHQKLL  576
              +  +      K  V +P +T +           K ++R +   S+  ++  R     L 
Sbjct  1863  RDTSEMTKMLEKYGVDLPFVTFVKDELRSREKVEKGKSRLIEASSLNDSVAMRVAFGNLY  1922

Query  577   KSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASL  636
              +     G      T    G   ++  +    + +  +  +DY   D ++  +    A L
Sbjct  1923  ATFHNNPGT----ATGSAVGCDPDIFWSKIPILLDGEIFAFDYTGYDASLSPV--WFACL  1976

Query  637   VLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFN  695
                +K       +H+   +   C  V     +     YV  GG  SG + T+  N++ N
Sbjct  1977  ---KKVLIKLGYTHQTSFIDYLCHSVH----LYKDRKYVINGGMPSGSSGTSIFNTMIN  2028


>sp|B2BMQ6|RDRP_ROTH6 RNA-directed RNA polymerase OS=Rotavirus 
A (strain RVA/Human/Indonesia/69M/1980/G8P4[10]) OX=10947 PE=3 
SV=1
Length=1088

 Score = 33.9 bits (76),  Expect = 9.4, Method: Composition-based stats.
 Identities = 38/204 (19%), Positives = 70/204 (34%), Gaps = 23/204 (11%)

Query  611  NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQ----VLSEM  666
            N  ++  D  + D +  N       +++        +   R  +  N   Q    ++   
Sbjct  513  NAMVLYTDVSQWDSSQHNTQPFRKGIIMGLDILANMTNDARVIQTLNLYKQTQINLMDSY  572

Query  667  VMCGGSLYVKP---GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA--DKYVR  721
            V       +K    G  +SG+  T  ANS+ N+     A +  +LS   NK +   K +R
Sbjct  573  VQIPDGNVIKKIQYGAVASGEKQTKAANSIANL-----ALIKTVLSRISNKYSFATKIIR  627

Query  722  NLQHRLYECLYRNRDVDTDFVNEFY-----AYLRKHFSMMILSDDAVVCFNSTYASQGLV  776
                  Y  L  N +V    V +        Y R +  +  L     +     Y + G +
Sbjct  628  VDGDDNYAVLQFNTEVTKQMVQDVSNDVRETYARMNAKVKALVSTVGIEIAKRYIAGGKI  687

Query  777  ASIKNFKSVLYYQNNVFMSEAKCW  800
                 F++ +   NN    ++  W
Sbjct  688  F----FRAGINLLNNEKRGQSTQW  707



Lambda      K        H        a         alpha
   0.317    0.134    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0411    0.140     1.90     42.6     43.6 

Effective search space used: 108132787668


  Database: uniprot_sprot.fasta
    Posted date:  Jun 30, 2025  8:32 PM
  Number of letters in database: 207,922,125
  Number of sequences in database:  573,661



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40