PSIBLAST 2.11.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Stephen F. Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: uniprot_sprot.fasta 573,661 sequences; 207,922,125 total letters Results from round 1 Query= YP_009725307.1 RNA-dependent RNA polymerase [Severe acute respiratory syndrome coronavirus 2] Length=932 Score E Sequences producing significant alignments: (Bits) Value sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute re... 1969 0.0 sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute res... 1914 0.0 sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus... 1911 0.0 sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus... 1906 0.0 sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus... 1904 0.0 sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus... 1451 0.0 sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus... 1423 0.0 sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East res... 1413 0.0 sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus... 1411 0.0 sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus... 1410 0.0 sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavir... 1308 0.0 sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavi... 1306 0.0 sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavir... 1300 0.0 sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavir... 1299 0.0 sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavir... 1299 0.0 sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavir... 1296 0.0 sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavi... 1294 0.0 sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavi... 1294 0.0 sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavi... 1292 0.0 sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavir... 1290 0.0 sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavir... 1287 0.0 sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectiou... 1186 0.0 sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious... 1186 0.0 sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus... 1184 0.0 sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious... 1182 0.0 sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemi... 1174 0.0 sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavir... 1163 0.0 sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavir... 1151 0.0 sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmi... 1142 0.0 sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavir... 1128 0.0 sp|Q9WQ77|R1AB_CVRSD Replicase polyprotein 1ab (Fragment) OS=Rat ... 483 2e-163 sp|Q9WQ76|R1AB_CVTMI Replicase polyprotein 1ab (Fragment) OS=Turk... 444 2e-148 sp|P0C6V7|R1AB_BEV Replicase polyprotein 1ab OS=Berne virus OX=11... 131 2e-29 sp|P0C6V8|R1AB_BRV1 Replicase polyprotein 1ab OS=Breda virus 1 OX... 117 5e-25 sp|F8RL29|R1AB_AMV79 Replicase polyprotein 1ab OS=Alphamesoniviru... 105 1e-21 sp|Q008X6|R1AB_WBV24 Replicase polyprotein 1ab OS=White bream vir... 100 6e-20 sp|Q68772|RPOA_SHFV Replicase polyprotein 1ab OS=Simian hemorrhag... 49.3 2e-04 sp|Q9WJB2|RPOA_PRRSR Replicase polyprotein 1ab OS=Porcine reprodu... 47.4 8e-04 sp|A6YQT5|RPOA_PRRSV Replicase polyprotein 1ab OS=Porcine reprodu... 46.6 0.001 sp|Q8B912|RPOA_PRRSB Replicase polyprotein 1ab OS=Porcine reprodu... 46.2 0.002 sp|Q9YN02|RPOA_PRRS1 Replicase polyprotein 1ab OS=Porcine reprodu... 46.2 0.002 sp|P18479|POLG_ZYMVC Genome polyprotein OS=Zucchini yellow mosaic... 38.9 0.30 sp|Q04561|RPOA_PRRSL Replicase polyprotein 1ab OS=Porcine reprodu... 38.5 0.40 sp|Q06502|RPOA_LDVC Replicase polyprotein 1ab OS=Lactate dehydrog... 38.1 0.48 sp|C4LCH1|UXUA_TOLAT Mannonate dehydratase OS=Tolumonas auensis (... 37.4 0.57 sp|A0MD28|RPOA_PRRSS Replicase polyprotein 1ab OS=Porcine reprodu... 38.1 0.60 sp|P18478|POLG_WMV2U Genome polyprotein (Fragment) OS=Watermelon ... 37.7 0.66 sp|Q83017|RPOA_LDVP Replicase polyprotein 1ab OS=Lactate dehydrog... 37.7 0.66 sp|Q89330|POLG_ZYMVR Genome polyprotein OS=Zucchini yellow mosaic... 36.6 1.4 sp|B1KEK5|PYRC_SHEWM Dihydroorotase OS=Shewanella woodyi (strain ... 35.8 1.6 sp|Q492K3|HISX_BLOPB Histidinol dehydrogenase OS=Blochmanniella p... 35.4 2.4 sp|P19811|RPOA_EAVBU Replicase polyprotein 1ab OS=Equine arteriti... 35.0 4.3 sp|O36979|POLG_ZYMVS Genome polyprotein OS=Zucchini yellow mosaic... 34.7 6.0 sp|Q0CRF3|ATG5_ASPTN Autophagy protein 5 OS=Aspergillus terreus (... 33.5 9.6 >sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute respiratory syndrome coronavirus 2 OX=2697049 GN=rep PE=1 SV=1 Length=7096 Score = 1969 bits (5102), Expect = 0.0, Method: Compositional matrix adjust. Identities = 932/932 (100%), Positives = 932/932 (100%), Gaps = 0/932 (0%) Query 1 SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD Sbjct 4393 SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 4452 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT Sbjct 4453 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 4512 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE Sbjct 4513 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 4572 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL Sbjct 4573 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 4632 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN Sbjct 4633 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 4692 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN Sbjct 4693 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 4752 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY Sbjct 4753 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 4812 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF Sbjct 4813 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 4872 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT Sbjct 4873 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 4932 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN Sbjct 4933 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 4992 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA Sbjct 4993 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 5052 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV Sbjct 5053 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 5112 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK Sbjct 5113 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 5172 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA Sbjct 5173 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 5232 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML Sbjct 5233 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 5292 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ Sbjct 5293 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 5324 >sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute respiratory syndrome coronavirus OX=694009 GN=rep PE=1 SV=1 Length=7073 Score = 1914 bits (4957), Expect = 0.0, Method: Compositional matrix adjust. Identities = 898/932 (96%), Positives = 916/932 (98%), Gaps = 0/932 (0%) Query 1 SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 SADA +FLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYN+KVAGFAKFLKTNCCRFQEKD Sbjct 4370 SADASTFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNEKVAGFAKFLKTNCCRFQEKD 4429 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 E+ NL+DSYFVVKRHT SNYQHEETIYNL+KDCPAVA HDFFKFR+DGDMVPHISRQRLT Sbjct 4430 EEGNLLDSYFVVKRHTMSNYQHEETIYNLVKDCPAVAVHDFFKFRVDGDMVPHISRQRLT 4489 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE Sbjct 4490 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 4549 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 RVRQ+LLKTVQFCDAMR+AGIVGVLTLDNQDLNGNWYDFGDF+Q PG GVP+VDSYYSL Sbjct 4550 RVRQSLLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSL 4609 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 LMPILTLTRAL AESH+D DL KP IKWDLLKYDFTEERL LFDRYFKYWDQTYHPNC+N Sbjct 4610 LMPILTLTRALAAESHMDADLAKPLIKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCIN 4669 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN Sbjct 4670 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 4729 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY Sbjct 4730 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 4789 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF Sbjct 4790 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 4849 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT Sbjct 4850 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 4909 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN Sbjct 4910 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 4969 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 MLKTVYSDVE PHLMGWDYPKCDRAMPNMLRIMASLVLARKH TCC+LSHRFYRLANECA Sbjct 4970 MLKTVYSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHNTCCNLSHRFYRLANECA 5029 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV Sbjct 5030 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 5089 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 RNLQHRLYECLYRNRDVD +FV+EFYAYLRKHFSMMILSDDAVVC+NS YA+QGLVASIK Sbjct 5090 RNLQHRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIK 5149 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 NFK+VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA Sbjct 5150 NFKAVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 5209 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML Sbjct 5210 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 5269 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ Sbjct 5270 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 5301 >sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus Rp3/2004 OX=349344 GN=rep PE=3 SV=1 Length=7071 Score = 1911 bits (4951), Expect = 0.0, Method: Compositional matrix adjust. Identities = 897/932 (96%), Positives = 914/932 (98%), Gaps = 0/932 (0%) Query 1 SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 SADA +FLNRVCGVSAARLTPCGTG STDVVYRAFDIYN+KVAGFAKFLKTNCCRFQEKD Sbjct 4368 SADASTFLNRVCGVSAARLTPCGTGISTDVVYRAFDIYNEKVAGFAKFLKTNCCRFQEKD 4427 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 E+ NL+DSYFVVKRHT SNYQHEETIYNL+KDCPAVA HDFFKFR+DGDMVPHISRQRLT Sbjct 4428 EEGNLLDSYFVVKRHTMSNYQHEETIYNLVKDCPAVAVHDFFKFRVDGDMVPHISRQRLT 4487 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE Sbjct 4488 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 4547 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 RVRQALLKTVQFCDAMR+AGIVGVLTLDNQDLNGNWYDFGDF+Q PG GVP+VDSYYSL Sbjct 4548 RVRQALLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSL 4607 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 LMPILTLTRAL AESH+D DL KP IKWDLLKYDFT ERL LFDRYFKYWDQTYHPNC+N Sbjct 4608 LMPILTLTRALAAESHMDADLAKPLIKWDLLKYDFTAERLCLFDRYFKYWDQTYHPNCIN 4667 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN Sbjct 4668 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 4727 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY Sbjct 4728 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 4787 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF Sbjct 4788 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 4847 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT Sbjct 4848 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 4907 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN Sbjct 4908 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 4967 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 MLKTVYSDVE PHLMGWDYPKCDRAMPNMLRIMASLVLARKH+TCC+LSHRFYRLANECA Sbjct 4968 MLKTVYSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHSTCCNLSHRFYRLANECA 5027 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV Sbjct 5028 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 5087 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 RNLQHRLYECLYRNRDVD +FV EFYAYLRKHFSMMILSDDAVVC+NS YA+QGLVASIK Sbjct 5088 RNLQHRLYECLYRNRDVDHEFVGEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIK 5147 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 NFK+VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA Sbjct 5148 NFKAVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 5207 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML Sbjct 5208 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 5267 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ Sbjct 5268 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 5299 >sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus 279/2005 OX=389167 GN=rep PE=3 SV=1 Length=7079 Score = 1906 bits (4937), Expect = 0.0, Method: Compositional matrix adjust. Identities = 894/932 (96%), Positives = 915/932 (98%), Gaps = 0/932 (0%) Query 1 SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 SADA +FLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYN++VAGFAKFLKTNCCRFQEKD Sbjct 4376 SADASTFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNERVAGFAKFLKTNCCRFQEKD 4435 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 E+ NL+DSYFVVKRHT SNYQHEETIYNL+K+CPAVA HDFFKFR+DGDMVPHISRQRLT Sbjct 4436 EEGNLLDSYFVVKRHTMSNYQHEETIYNLVKECPAVAVHDFFKFRVDGDMVPHISRQRLT 4495 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE Sbjct 4496 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 4555 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 RVRQALLKTVQFCDAMR+AGIVGVLTLDNQDLNGNWYDFGDF+Q PG GVP+VDSYYSL Sbjct 4556 RVRQALLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSL 4615 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 LMPILTLT+AL AESH+D DL KP IKWDLLKYDFTEERL LFDRYFKYWDQTYHPNC+N Sbjct 4616 LMPILTLTKALAAESHMDADLAKPLIKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCIN 4675 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN Sbjct 4676 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 4735 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY Sbjct 4736 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 4795 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF Sbjct 4796 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 4855 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQD LFAYTKRNVIPTIT Sbjct 4856 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDVLFAYTKRNVIPTIT 4915 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN Sbjct 4916 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 4975 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 MLKTVYSDVE PHLMGWDYPKCDRAMPNMLRIMASLVLARKH+TCC+LSHRFYRLANECA Sbjct 4976 MLKTVYSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHSTCCNLSHRFYRLANECA 5035 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV Sbjct 5036 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 5095 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 RNLQHRLYECLYRNRDVD +FV+EFYAYLRKHFSMMILSDDAVVC+NS YA+QGLVASIK Sbjct 5096 RNLQHRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIK 5155 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 NFK+V YYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA Sbjct 5156 NFKAVHYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 5215 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML Sbjct 5216 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 5275 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ Sbjct 5276 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 5307 >sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus HKU3 OX=442736 GN=rep PE=3 SV=1 Length=7067 Score = 1904 bits (4933), Expect = 0.0, Method: Compositional matrix adjust. Identities = 891/932 (96%), Positives = 918/932 (98%), Gaps = 0/932 (0%) Query 1 SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 SADA +FLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYN+KVAGFAKFLKTNCCRFQEKD Sbjct 4364 SADASTFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNEKVAGFAKFLKTNCCRFQEKD 4423 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 E+ NL+DSYFVVKRHT SNYQHEETIYNL+K+CPAVA HDFFKFR+DGDMVPHISRQRLT Sbjct 4424 EEGNLLDSYFVVKRHTMSNYQHEETIYNLIKECPAVAVHDFFKFRVDGDMVPHISRQRLT 4483 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDD+YFNKKDWYDFVENPD+LRVYANLGE Sbjct 4484 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDNYFNKKDWYDFVENPDVLRVYANLGE 4543 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 RVR+ALLKTVQFCDAMR+AGIVGVLTLDNQDLNGNWYDFGDF+Q PG GVP+VDSYYSL Sbjct 4544 RVRRALLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSL 4603 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 LMPILTLT+AL AESH+D DL KP +KWDLLKYDFTEERL LFDRYFKYWDQTYHPNC+N Sbjct 4604 LMPILTLTKALAAESHMDADLAKPLVKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCIN 4663 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN Sbjct 4664 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 4723 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY Sbjct 4724 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 4783 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF Sbjct 4784 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 4843 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT Sbjct 4844 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 4903 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN Sbjct 4904 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 4963 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 MLKTVYSDVE+PHLMGWDYPKCDRAMPNMLRIMASL+LARKH+TCC+LSHRFYRLANECA Sbjct 4964 MLKTVYSDVESPHLMGWDYPKCDRAMPNMLRIMASLILARKHSTCCNLSHRFYRLANECA 5023 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV Sbjct 5024 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 5083 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 RNLQHRLYECLYRNRDVD +FV+EFYAYLRKHFSMMILSDDAVVC+NS YA+QGLVASIK Sbjct 5084 RNLQHRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIK 5143 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 NFK+VLYYQNNVFMSEAKCWTETDLT+GPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA Sbjct 5144 NFKAVLYYQNNVFMSEAKCWTETDLTRGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 5203 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML Sbjct 5204 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 5263 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ Sbjct 5264 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 5295 >sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus HKU9 OX=694006 GN=rep PE=1 SV=1 Length=6930 Score = 1451 bits (3755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 676/932 (73%), Positives = 770/932 (83%), Gaps = 1/932 (0%) Query 2 ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 A + FLNRV G S ARL P G+G D+V RAFDI N KVAGF LK NCCR+QE D Sbjct 4234 ARDECFLNRVRGTSGVARLVPLGSGVQPDIVLRAFDICNTKVAGFGLHLKNNCCRYQELD 4293 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 D +DSYFVVKRHT SNY E+ Y LKDC VA+HDFFKF I+G M PH+SR+RLT Sbjct 4294 ADGTQLDSYFVVKRHTESNYLLEQRCYEKLKDCGVVARHDFFKFNIEGVMTPHVSRERLT 4353 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTMADLVY+LRHFD NCDTLKEILV CC DYF++KDWYD VENPDI+RVY NLGE Sbjct 4354 KYTMADLVYSLRHFDNNNCDTLKEILVLRGCCTADYFDRKDWYDPVENPDIIRVYHNLGE 4413 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 VR+A+L V+ D+M G++GVLTLDNQDLNG WYDFGDFI+ G+GV V+D+YYSL Sbjct 4414 TVRKAVLSAVKMADSMVEQGLIGVLTLDNQDLNGQWYDFGDFIEGPAGAGVAVMDTYYSL 4473 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 MP+ T+T L AE HVD D +KP WD+ KYD+T+ + LF +YFKYWD YHPNCV Sbjct 4474 AMPVYTMTNMLAAECHVDGDFSKPKRVWDICKYDYTQFKYSLFSKYFKYWDMQYHPNCVA 4533 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 C DDRCILHCANFN+LFS V P TSFGPLV+KI+VDGVPFVVSTGYH+RELGVV NQD+ Sbjct 4534 CADDRCILHCANFNILFSMVLPNTSFGPLVQKIYVDGVPFVVSTGYHYRELGVVMNQDIR 4593 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 H+ RLS +ELLVYAADPAMH A+ N L DKRT C SVAA+T V FQTVKPG FN+DFY Sbjct 4594 QHAQRLSLRELLVYAADPAMHVAASNALADKRTVCMSVAAMTTGVTFQTVKPGQFNEDFY 4653 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 +FAV GFFKEGS++ KHFF+AQDGNAAISDYDYYRYNLPTMCDI+QLLF +EVVDKYF Sbjct 4654 NFAVKCGFFKEGSTISFKHFFYAQDGNAAISDYDYYRYNLPTMCDIKQLLFSLEVVDKYF 4713 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 DCYDGGC+ A+QV+V N DKSAGFPFNK+GKARLYY+S+SY DQD LFAYTKRNV+PTIT Sbjct 4714 DCYDGGCLQASQVVVANYDKSAGFPFNKFGKARLYYESLSYADQDELFAYTKRNVLPTIT 4773 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSI STMTNRQFHQK+LKSIAA RGA+VVIGT+KFYGGW+ Sbjct 4774 QMNLKYAISAKNRARTVAGVSIASTMTNRQFHQKMLKSIAAARGASVVIGTTKFYGGWNR 4833 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 ML+T+ VENPHLMGWDYPKCDRAMPN+LRI ASL+LARKH TCC+ S RFYRLANECA Sbjct 4834 MLRTLCEGVENPHLMGWDYPKCDRAMPNLLRIFASLILARKHATCCNASERFYRLANECA 4893 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSEMV+CGG YVKPGGTSSGD+TTAYANSVFNICQAV+AN+N LS DGNKI YV Sbjct 4894 QVLSEMVLCGGGFYVKPGGTSSGDSTTAYANSVFNICQAVSANLNTFLSIDGNKIYTTYV 4953 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 + LQ RLY +YR+ VD + V ++Y YLRKHFSMMILSDD VVC+N+ YA +G VA I+ Sbjct 4954 QELQRRLYLGIYRSNTVDNELVLDYYNYLRKHFSMMILSDDGVVCYNADYAQKGYVADIQ 5013 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 FK +LY+QNNVFMSE+KCW E D+TKGPHEFCSQHTMLV + VYLPYPDPSRILGA Sbjct 5014 GFKELLYFQNNVFMSESKCWVEPDITKGPHEFCSQHTMLVDMKGEQVYLPYPDPSRILGA 5073 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDD++KTDGTLM+ER+VSLAIDAYPLTKHP+ EY +VF YLQYI+KLH+ELTGH+L Sbjct 5074 GCFVDDLLKTDGTLMMERYVSLAIDAYPLTKHPDPEYQNVFWCYLQYIKKLHEELTGHLL 5133 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 D YSVML +DN S+YWE EFYE MY LQ Sbjct 5134 DTYSVMLASDNASKYWEVEFYENMYMESATLQ 5165 >sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus HKU5 OX=694008 GN=rep PE=3 SV=1 Length=7182 Score = 1423 bits (3684), Expect = 0.0, Method: Compositional matrix adjust. Identities = 659/931 (71%), Positives = 776/931 (83%), Gaps = 3/931 (0%) Query 5 QSFLNRVCG-VSAARLTPCGTGTSTDVVYRAFDI--YNDKVAGFAKFLKTNCCRFQEKDE 61 +FLNRV G + AR+ PC +G +TDVV+RAFDI Y KVAG K+ KTN CRF E D+ Sbjct 4471 SNFLNRVRGSIVNARIEPCASGLTTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVEVDD 4530 Query 62 DDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTK 121 + + +DS+FVVKRHT NY+ E+ Y+L+KDC AVA HDFF F +D PHI RQRLT+ Sbjct 4531 EGHRLDSFFVVKRHTMENYELEKRCYDLVKDCDAVAVHDFFIFDVDKVKTPHIVRQRLTE 4590 Query 122 YTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGER 181 YTM DLVYALRHFD+ NC+ LK ILV Y CCD YF+ K W+DFVENP+++ VY LGER Sbjct 4591 YTMMDLVYALRHFDQNNCEVLKSILVKYGCCDASYFDNKLWFDFVENPNVISVYHKLGER 4650 Query 182 VRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLL 241 +RQA+L TV+FCD M +G+VGVLTLDNQDLNG WYDFGDF+ T PG+GV +VDSYYS L Sbjct 4651 IRQAVLNTVKFCDQMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYYSYL 4710 Query 242 MPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNC 301 MP+L++T L AE+H D DLTKP I+W LL+YD+T+ ++ LF++YFK WDQ YHPNCVNC Sbjct 4711 MPVLSMTNCLAAETHRDCDLTKPLIEWPLLEYDYTDYKIGLFEKYFKXWDQQYHPNCVNC 4770 Query 302 LDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNL 361 DDRC+LHCANFNVLFS P TSFGP+VRKIFVDGVPFV+S GYH++ELG+V N DV+L Sbjct 4771 TDDRCVLHCANFNVLFSMTLPGTSFGPIVRKIFVDGVPFVISCGYHYKELGLVMNMDVSL 4830 Query 362 HSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYD 421 H RLS KEL++YAADPAMH AS + L D RT CFSVAALT + FQTV+PGNFNKDFYD Sbjct 4831 HRHRLSLKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKDFYD 4890 Query 422 FAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFD 481 F VSKGFFKEGSSV L+HFFFAQDG+AAI+DY YY YNLPTMCDI+Q+LF +EVVD+YF+ Sbjct 4891 FVVSKGFFKEGSSVTLRHFFFAQDGHAAITDYSYYAYNLPTMCDIKQMLFCMEVVDRYFE 4950 Query 482 CYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQ 541 YDGGC+NA++VIVNNLDKSAG PFNK+GKAR+YY+S+SY++QD LFA TKRNV+PTITQ Sbjct 4951 IYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESLSYQEQDELFAMTKRNVLPTITQ 5010 Query 542 MNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNM 601 MNLKYAISAKNRARTVAGVSI STMTNRQ+HQK+LKS+AATRG+T VIGT+KFYGGW M Sbjct 5011 MNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGSTCVIGTTKFYGGWDFM 5070 Query 602 LKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQ 661 LKT+Y DV+NPHLMGWDYPKCDRAMPNM RI ASL+LARKH+TCC+ + RFYRLANECAQ Sbjct 5071 LKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHSTCCTNTDRFYRLANECAQ 5130 Query 662 VLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVR 721 VLSE V+CGG YVKPGGTSSGDATTAYANSVFNI QA TANV+AL+ +GN I D+ V+ Sbjct 5131 VLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNTIVDEEVK 5190 Query 722 NLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKN 781 ++Q LY +YR D FV+ +YA+L KHFSMMILSDD VVC+NS YA++G +ASI+N Sbjct 5191 DMQFELYVNVYRKSQPDPKFVDRYYAFLNKHFSMMILSDDGVVCYNSDYATKGYIASIQN 5250 Query 782 FKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAG 841 FK LYYQNNVFMSEAKCW ETDL KGPHEFCSQHT+ +K GDD +LPYPDPSRIL AG Sbjct 5251 FKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLFIKDGDDGYFLPYPDPSRILSAG 5310 Query 842 CFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLD 901 CFVDDIVKTDGTLM+ERFVSLAIDAYPLTKH + EY +VF +YLQYI KL+ +LTGHMLD Sbjct 5311 CFVDDIVKTDGTLMVERFVSLAIDAYPLTKHDDPEYQNVFWVYLQYIEKLYKDLTGHMLD 5370 Query 902 MYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 YSVML DN++++WE FY +YT T LQ Sbjct 5371 SYSVMLCGDNSAKFWEESFYRDLYTAPTTLQ 5401 >sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012) OX=1263720 GN=rep PE=1 SV=1 Length=7078 Score = 1413 bits (3657), Expect = 0.0, Method: Compositional matrix adjust. Identities = 663/931 (71%), Positives = 771/931 (83%), Gaps = 4/931 (0%) Query 5 QSFLNRVCG-VSAARLTPCGTGTSTDVVYRAFDI--YNDKVAGFAKFLKTNCCRFQEKDE 61 +FL RV G + AR+ PC +G STDVV+RAFDI Y KVAG K+ KTN CRF E D+ Sbjct 4381 SNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVELDD 4440 Query 62 DDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTK 121 + +DSYFVVKRHT NY+ E+ Y+LL+DC AVA HDFF F +D PHI RQRLT+ Sbjct 4441 QGHHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQRLTE 4500 Query 122 YTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGER 181 YTM DLVYALRHFD+ N + LK ILV Y CCD YF K W+DFVENP ++ VY LGER Sbjct 4501 YTMMDLVYALRHFDQ-NSEVLKAILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKLGER 4559 Query 182 VRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLL 241 VRQA+L TV+FCD M AG+VGVLTLDNQDLNG WYDFGDF+ T PGSGV +VDSYYS L Sbjct 4560 VRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYYSYL 4619 Query 242 MPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNC 301 MP+L++T L AE+H D D KP I+W L +YDFT+ +++LF++YFKYWDQTYH NCVNC Sbjct 4620 MPVLSMTDCLAAETHRDCDFNKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHANCVNC 4679 Query 302 LDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNL 361 DDRC+LHCANFNVLF+ P T FGP+VRKIFVDGVPFVVS GYH++ELG+V N DV+L Sbjct 4680 TDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMNMDVSL 4739 Query 362 HSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYD 421 H RLS KEL++YAADPAMH AS N LD RT+CFSVAALT + FQTV+PGNFN+DFYD Sbjct 4740 HRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFNQDFYD 4799 Query 422 FAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFD 481 F VSKGFFKEGSSV LKHFFFAQDGNAAI+DY+YY YNLPTMCDI+Q+LF +EVV+KYF+ Sbjct 4800 FVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVVNKYFE 4859 Query 482 CYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQ 541 YDGGC+NA++V+VNNLDKSAG PFNK+GKAR+YY+SMSY++QD LFA TKRNVIPT+TQ Sbjct 4860 IYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVIPTMTQ 4919 Query 542 MNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNM 601 MNLKYAISAKNRARTVAGVSI STMTNRQ+HQK+LKS+AATRGAT VIGT+KFYGGW M Sbjct 4920 MNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGWDFM 4979 Query 602 LKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQ 661 LKT+Y DV+NPHLMGWDYPKCDRAMPNM RI ASL+LARKH TCC+ RFYRLANECAQ Sbjct 4980 LKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLANECAQ 5039 Query 662 VLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVR 721 VLSE V+CGG YVKPGGTSSGDATTAYANSVFNI QA TANV+AL+ +GNKI DK V+ Sbjct 5040 VLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIVDKEVK 5099 Query 722 NLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKN 781 ++Q LY +YR+ D FV+++YA+L KHFSMMILSDD VVC+NS YA++G +A I+N Sbjct 5100 DMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYIAGIQN 5159 Query 782 FKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAG 841 FK LYYQNNVFMSEAKCW ETDL KGPHEFCSQHT+ +K GDD +LPYPDPSRIL AG Sbjct 5160 FKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRILSAG 5219 Query 842 CFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLD 901 CFVDDIVKTDGTLM+ERFVSLAIDAYPLTKH + EY +VF +YLQYI KL+ +LTGHMLD Sbjct 5220 CFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLTGHMLD 5279 Query 902 MYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 YSVML DN++++WE FY +Y+ T LQ Sbjct 5280 SYSVMLCGDNSAKFWEEAFYRDLYSSPTTLQ 5310 >sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus HKU4 OX=694007 GN=rep PE=1 SV=1 Length=7119 Score = 1411 bits (3653), Expect = 0.0, Method: Compositional matrix adjust. Identities = 660/930 (71%), Positives = 776/930 (83%), Gaps = 3/930 (0%) Query 6 SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDK--VAGFAKFLKTNCCRFQEKDED 62 +FLNRV G S ARL PC +G +TDVVYRAFDI N K VAG K+ KTN CRF + D++ Sbjct 4425 NFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQVDDE 4484 Query 63 DNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKY 122 + +DSYF+VKRHT SNY+ E+ Y+LLKDC AVA HDFF F +D PHI RQ LT+Y Sbjct 4485 GHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQSLTEY 4544 Query 123 TMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERV 182 TM DLVYALRHFD+ NC+ LK ILV Y CC+ YF+ K W+DFVENP ++ VY LGER+ Sbjct 4545 TMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKLGERI 4604 Query 183 RQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLM 242 RQA+L TV+ CD M +G+VGVLTLDNQDLNG WYDFGDF+ T PG+GV +VDSYYS LM Sbjct 4605 RQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYYSYLM 4664 Query 243 PILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCL 302 P+L++T L AE+H D D KP I+W LL+YD+T+ ++ LF++YFKYWDQTYHPNCVNC Sbjct 4665 PVLSMTNCLAAETHKDCDFNKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQTYHPNCVNCS 4724 Query 303 DDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLH 362 DDRCILHCANFNVLFS V P TSFGP+VRKIFVDGVPF+VS GYH++ELG+V N D N+H Sbjct 4725 DDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNMDFNIH 4784 Query 363 SSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDF 422 RL+ KEL++YAADPAMH AS + L D RT CFSVAALT + FQTV+PGNFNKDFYDF Sbjct 4785 RHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKDFYDF 4844 Query 423 AVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDC 482 VS+GFFKEGSSV LKHFFFAQDG+AAI+DY YY YNLPTM DI+Q+LF +EVVDKYFD Sbjct 4845 VVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVDKYFDI 4904 Query 483 YDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQM 542 YDGGC+NA++VIVNNLDKSAG PFNK+GKAR+YY+SMSY++QD LFA TKRNV+PTITQM Sbjct 4905 YDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLPTITQM 4964 Query 543 NLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML 602 NLKYAISAKNRARTVAGVSI STMTNRQ+HQK+LKS+AATRGAT VIGT+KFYGGW ML Sbjct 4965 NLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGWDFML 5024 Query 603 KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQV 662 KT+Y DVE+PHLMGWDYPKCDRAMPNM RI+ASL+LARKH+TCC+ S RFYRLANECAQV Sbjct 5025 KTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANECAQV 5084 Query 663 LSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRN 722 LSE V+CGG YVKPGGTSSGDATTAYANSVFNI QA TANV+AL+S +GN I D+ +++ Sbjct 5085 LSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDREIKD 5144 Query 723 LQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNF 782 +Q LY +YR D FV+++YA+L KHFSMMILSDD VVC+NS YA++G VASI+NF Sbjct 5145 MQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVASIQNF 5204 Query 783 KSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGC 842 K LYYQNNVFMSEAKCW ET+L KGPHEFCSQHT+ +K GDD +LPYPDPSRIL AGC Sbjct 5205 KETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRILSAGC 5264 Query 843 FVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDM 902 FVDDIVKTDGT+M+ER+VSLAIDAYPLTKH + EY +VF +YLQYI KL+ +LTGHMLD Sbjct 5265 FVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTGHMLDS 5324 Query 903 YSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 YSVML D+++++WE FY +Y+ T LQ Sbjct 5325 YSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 5354 >sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus 133/2005 OX=389230 GN=rep PE=3 SV=1 Length=7126 Score = 1410 bits (3650), Expect = 0.0, Method: Compositional matrix adjust. Identities = 660/930 (71%), Positives = 777/930 (84%), Gaps = 3/930 (0%) Query 6 SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDK--VAGFAKFLKTNCCRFQEKDED 62 +FLNRV G S ARL PC +G +TDVVYRAFDI N K VAG K+ KTN CRF + D++ Sbjct 4432 NFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQVDDE 4491 Query 63 DNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKY 122 + +DSYF+VKRHT SNY+ E+ Y+LLKDC AVA HDFF F +D PHI RQ LT+Y Sbjct 4492 GHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQSLTEY 4551 Query 123 TMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERV 182 TM DLVYALRHFD+ NC+ LK ILV Y CC+ YF+ K W+DFVENP ++ VY LGER+ Sbjct 4552 TMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKLGERI 4611 Query 183 RQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLM 242 RQA+L TV+ CD M +G+VGVLTLDNQDLNG WYDFGDF+ T PG+GV +VDSYYS LM Sbjct 4612 RQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYYSYLM 4671 Query 243 PILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCL 302 P+L++T L AE+H D D KP I+W LL+YD+T+ ++ LF++YFK+WDQTYHPNCVNC Sbjct 4672 PVLSMTNCLAAETHKDCDFNKPLIEWLLLEYDYTDYKIGLFNKYFKHWDQTYHPNCVNCG 4731 Query 303 DDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLH 362 DDRCILHCANFNVLFS V P TSFGP+VRKIFVDGVPF+VS GYH++ELG+V N DVN+H Sbjct 4732 DDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNMDVNIH 4791 Query 363 SSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDF 422 RL+ KEL++YAADPAMH AS + L D RT CFSVAALT + FQTV+PGNFNKDFYDF Sbjct 4792 RHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKDFYDF 4851 Query 423 AVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDC 482 VS+GFFKEGSSV LKHFFFAQDG+AAI+DY YY YNLPTM DI+Q+LF +EVVDKYFD Sbjct 4852 VVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVDKYFDI 4911 Query 483 YDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQM 542 YDGGC+NA++VIVNNLDKSAG PFNK+GKAR+YY+SMSY++QD LFA TKRNV+PTITQM Sbjct 4912 YDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLPTITQM 4971 Query 543 NLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML 602 NLKYAISAKNRARTVAGVSI STMTNRQ+HQK+LKS+AATRGAT VIGT+KFYGGW ML Sbjct 4972 NLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGWDFML 5031 Query 603 KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQV 662 KT+Y DVE+PHLMGWDYPKCDRAMPNM RI+ASL+LARKH+TCC+ S RFYRLANECAQV Sbjct 5032 KTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANECAQV 5091 Query 663 LSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRN 722 LSE V+CGG YVKPGGTSSGDATTAYANSVFNI QA TANV+AL+S +GN I D+ +++ Sbjct 5092 LSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDREIKD 5151 Query 723 LQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNF 782 +Q LY +YR D FV+++YA+L KHFSMMILSDD VVC+NS YA++G VASI+NF Sbjct 5152 MQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVASIQNF 5211 Query 783 KSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGC 842 K LYYQNNVFMSEAKCW ET+L KGPHEFCSQHT+ +K GDD +LPYPDPSRIL AGC Sbjct 5212 KETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRILSAGC 5271 Query 843 FVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDM 902 FVDDIVKTDGT+M+ER+VSLAIDAYPLTKH + EY +VF +YLQYI KL+ +LTGHMLD Sbjct 5272 FVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTGHMLDS 5331 Query 903 YSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 YSVML D+++++WE FY +Y+ T LQ Sbjct 5332 YSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 5361 >sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavirus (strain 2) OX=76344 GN=rep PE=3 SV=1 Length=7124 Score = 1308 bits (3384), Expect = 0.0, Method: Compositional matrix adjust. Identities = 618/928 (67%), Positives = 740/928 (80%), Gaps = 5/928 (1%) Query 6 SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN 64 +FLNRV G S ARL PC +G TDV RAFDI N AG + K NCCRFQ DED N Sbjct 4407 NFLNRVRGTSVNARLVPCASGLDTDVQLRAFDICNANRAGIGLYYKVNCCRFQRADEDGN 4466 Query 65 LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM 124 +D +FV+KR Y E+ Y L K+C VA+H+FF F ++G VPHI R+ L+KYTM Sbjct 4467 TLDKFFVIKRTNLEVYNKEKECYELTKECGVVAEHEFFTFDVEGSRVPHIVRKDLSKYTM 4526 Query 125 ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ 184 DL YALRHFD +C TLKEIL+TY CD+ YF KKDWYDFVEN DI+ VY LG + Sbjct 4527 LDLCYALRHFDRNDCSTLKEILLTYAECDESYFQKKDWYDFVENSDIINVYKKLGPIFNR 4586 Query 185 ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI 244 ALL T +F D + AG+VGVLTLDNQDL G WYDFGDF++T PG GV V DSYYS +MP+ Sbjct 4587 ALLNTAKFADTLVEAGLVGVLTLDNQDLYGQWYDFGDFVKTVPGCGVAVADSYYSYMMPM 4646 Query 245 LTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD 304 LT+ AL +E ++ Y ++DL++YDFT+ +L+LF++YFKYW TYHPN C DD Sbjct 4647 LTMCHALDSELFIN----GTYREFDLVQYDFTDFKLELFNKYFKYWSMTYHPNTCECEDD 4702 Query 305 RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS 364 RCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+ H Sbjct 4703 RCIIHCANFNILFSMVLPKTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNMDVDTHRY 4762 Query 365 RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV 424 RLS K+LL+YAADPA+H AS + LLD RT CFSVAA+T+ V FQTVKPGNFN+DFY+F + Sbjct 4763 RLSLKDLLLYAADPALHVASASALLDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYEFIL 4822 Query 425 SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD 484 SKG KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV+KYF+ YD Sbjct 4823 SKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVNKYFEIYD 4882 Query 485 GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL 544 GGCI A QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+TQMNL Sbjct 4883 GGCIPATQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEVYAYTKRNVLPTLTQMNL 4942 Query 545 KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT 604 KYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW +ML+ Sbjct 4943 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRR 5002 Query 605 VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS 664 + DV++P LMGWDYPKCDRAMPN+LRI++SLVLARKH +CCS + RFYRLANECAQVLS Sbjct 5003 LIKDVDSPVLMGWDYPKCDRAMPNILRIISSLVLARKHDSCCSHTDRFYRLANECAQVLS 5062 Query 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ 724 E+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAV+ANV +L++ +G+KI D +R LQ Sbjct 5063 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCSLMACNGHKIEDLSIRELQ 5122 Query 725 HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS 784 RLY +YR VD FVNE+Y +L KHFSMMILSDD VVC+NS +AS+G +A+I F+ Sbjct 5123 KRLYSNVYRADHVDPAFVNEYYEFLNKHFSMMILSDDGVVCYNSEFASKGYIANISAFQQ 5182 Query 785 VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV 844 VLYYQNNVFMSEAKCW ETD+ KGPHEFCSQHTMLVK D VYLPYPDPSRILGAGCFV Sbjct 5183 VLYYQNNVFMSEAKCWVETDIEKGPHEFCSQHTMLVKMDGDEVYLPYPDPSRILGAGCFV 5242 Query 845 DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS 904 DD++KTD L+IERFVSLAIDAYPL H N EY +VF +YL+YI+KL+++L +LD YS Sbjct 5243 DDLLKTDSVLLIERFVSLAIDAYPLVYHENPEYQNVFRVYLEYIKKLYNDLGNQILDSYS 5302 Query 905 VMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 V+L+ + ++ + FY+ MY V+Q Sbjct 5303 VILSTCDGQKFTDETFYKNMYLRSAVMQ 5330 >sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavirus (strain A59) OX=11142 GN=rep PE=1 SV=1 Length=7176 Score = 1306 bits (3379), Expect = 0.0, Method: Compositional matrix adjust. Identities = 617/928 (66%), Positives = 741/928 (80%), Gaps = 5/928 (1%) Query 6 SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN 64 +FLNR+ G S ARL PC +G TDV RAFDI N AG + K NCCRFQ DED N Sbjct 4459 NFLNRIRGTSVNARLVPCASGLDTDVQLRAFDICNANRAGIGLYYKVNCCRFQRVDEDGN 4518 Query 65 LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM 124 +D +FVVKR Y E+ Y L K+C VA+H+FF F ++G VPHI R+ L+K+TM Sbjct 4519 KLDKFFVVKRTNLEVYNKEKECYELTKECGVVAEHEFFTFDVEGSRVPHIVRKDLSKFTM 4578 Query 125 ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ 184 DL YALRHFD +C TLKEIL+TY C++ YF KKDWYDFVENPDI+ VY LG + Sbjct 4579 LDLCYALRHFDRNDCSTLKEILLTYAECEESYFQKKDWYDFVENPDIINVYKKLGPIFNR 4638 Query 185 ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI 244 ALL T +F DA+ AG+VGVLTLDNQDL G WYDFGDF++T PG GV V DSYYS +MP+ Sbjct 4639 ALLNTAKFADALVEAGLVGVLTLDNQDLYGQWYDFGDFVKTVPGCGVAVADSYYSYMMPM 4698 Query 245 LTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD 304 LT+ AL +E V+ Y ++DL++YDFT+ +L+LF +YFK+W TYHPN C DD Sbjct 4699 LTMCHALDSELFVN----GTYREFDLVQYDFTDFKLELFTKYFKHWSMTYHPNTCECEDD 4754 Query 305 RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS 364 RCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+ H Sbjct 4755 RCIIHCANFNILFSMVLPKTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNMDVDTHRY 4814 Query 365 RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV 424 RLS K+LL+YAADPA+H AS + LLD RT CFSVAA+T+ V FQTVKPGNFN+DFY+F + Sbjct 4815 RLSLKDLLLYAADPALHVASASALLDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYEFIL 4874 Query 425 SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD 484 SKG KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV+KYF+ Y+ Sbjct 4875 SKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVNKYFEIYE 4934 Query 485 GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL 544 GGCI A QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+TQMNL Sbjct 4935 GGCIPATQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNL 4994 Query 545 KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT 604 KYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW +ML+ Sbjct 4995 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRR 5054 Query 605 VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS 664 + DV++P LMGWDYPKCDRAMPN+LRI++SLVLARKH +CCS + RFYRLANECAQVLS Sbjct 5055 LIKDVDSPVLMGWDYPKCDRAMPNILRIVSSLVLARKHDSCCSHTDRFYRLANECAQVLS 5114 Query 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ 724 E+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAV+ANV +L++ +G+KI D +R LQ Sbjct 5115 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCSLMACNGHKIEDLSIRELQ 5174 Query 725 HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS 784 RLY +YR VD FV+E+Y +L KHFSMMILSDD VVC+NS +AS+G +A+I F+ Sbjct 5175 KRLYSNVYRADHVDPAFVSEYYEFLNKHFSMMILSDDGVVCYNSEFASKGYIANISAFQQ 5234 Query 785 VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV 844 VLYYQNNVFMSEAKCW ETD+ KGPHEFCSQHTMLVK D VYLPYPDPSRILGAGCFV Sbjct 5235 VLYYQNNVFMSEAKCWVETDIEKGPHEFCSQHTMLVKMDGDEVYLPYPDPSRILGAGCFV 5294 Query 845 DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS 904 DD++KTD L+IERFVSLAIDAYPL H N EY +VF +YL+YI+KL+++L +LD YS Sbjct 5295 DDLLKTDSVLLIERFVSLAIDAYPLVYHENPEYQNVFRVYLEYIKKLYNDLGNQILDSYS 5354 Query 905 VMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 V+L+ + ++ + FY+ MY VLQ Sbjct 5355 VILSTCDGQKFTDETFYKNMYLRSAVLQ 5382 >sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N1) OX=443239 GN=rep PE=3 SV=1 Length=7182 Score = 1300 bits (3365), Expect = 0.0, Method: Compositional matrix adjust. Identities = 623/928 (67%), Positives = 735/928 (79%), Gaps = 5/928 (1%) Query 6 SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN 64 +FLNRV G S ARL PC +G STDV RAFDI N AG + K NCCRFQ D+D N Sbjct 4462 NFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRIDDDGN 4521 Query 65 LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM 124 +D +FVVKR Y E+T Y L K C VA+HDFF F IDG VPHI R+ L+KYTM Sbjct 4522 KLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRRNLSKYTM 4581 Query 125 ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ 184 DL YALRHFD +C L EIL Y C + YF+KKDWYDFVENPDI+ +Y LG + Sbjct 4582 LDLCYALRHFDRNDCSILCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGPIFNR 4641 Query 185 ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI 244 ALL TV F D + G+VGVLTLDNQDL G WYDFGDFIQT PG GV V DSYYS +MP+ Sbjct 4642 ALLNTVIFADTLVEVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSYMMPM 4701 Query 245 LTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD 304 LT+ L E V+ Y ++DL++YDFT+ +L+LF++YFKYW YHPN V+C +D Sbjct 4702 LTMCHVLDCELFVN----DSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVDCDND 4757 Query 305 RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS 364 RCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+ H Sbjct 4758 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVDTHRY 4817 Query 365 RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV 424 RLS K+LL+YAADPAMH AS + LLD RT CFSVAA+T+ + FQTVKPGNFN+DFY+F Sbjct 4818 RLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFYEFVK 4877 Query 425 SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD 484 SKG FKEGS+V+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF+ YD Sbjct 4878 SKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD 4937 Query 485 GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL 544 GGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+Q+ ++AYTKRNV+PT+TQMNL Sbjct 4938 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNL 4997 Query 545 KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT 604 KYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW +ML+ Sbjct 4998 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRH 5057 Query 605 VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS 664 + DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH CCS RFYRLANECAQVLS Sbjct 5058 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLS 5117 Query 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ 724 E+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAVTANV +L++ +G+KI D +RNLQ Sbjct 5118 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQ 5177 Query 725 HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS 784 RLY +YR VD FVNE+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I F+ Sbjct 5178 KRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANISVFQQ 5237 Query 785 VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV 844 VLYYQNNVFMSE+KCW E D+T GPHEFCSQHTMLVK DYVYLPYPDPSRILGAGCFV Sbjct 5238 VLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGAGCFV 5297 Query 845 DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS 904 DD++KTD L+IERFVSLAIDAYPL H N+EY VF +YL+YI+KL+++L +LD YS Sbjct 5298 DDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGTQILDSYS 5357 Query 905 VMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 V+L+ + ++ E FY+ MY V+Q Sbjct 5358 VILSTCDGLKFTEESFYKNMYLKSAVMQ 5385 >sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N5) OX=443241 GN=rep PE=3 SV=1 Length=7132 Score = 1299 bits (3362), Expect = 0.0, Method: Compositional matrix adjust. Identities = 622/928 (67%), Positives = 735/928 (79%), Gaps = 5/928 (1%) Query 6 SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN 64 +FLNRV G S ARL PC +G STDV RAFDI N AG + K NCCRFQ D+D N Sbjct 4412 NFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRIDDDGN 4471 Query 65 LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM 124 +D +FVVKR Y E+T Y L K C VA+HDFF F IDG VPHI R+ L+KYTM Sbjct 4472 KLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRRNLSKYTM 4531 Query 125 ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ 184 DL YALRHFD +C L EIL Y C + YF+KKDWYDFVENPDI+ +Y LG + Sbjct 4532 LDLCYALRHFDRNDCSILCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGPIFNR 4591 Query 185 ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI 244 ALL TV F D + G+VGVLTLDNQDL G WYDFGDFIQT PG GV V DSYYS +MP+ Sbjct 4592 ALLNTVIFADTLVEVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSYMMPM 4651 Query 245 LTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD 304 LT+ L E V+ Y ++DL++YDFT+ +L+LF++YFKYW YHPN V+C +D Sbjct 4652 LTMCHVLDCELFVN----DSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVDCDND 4707 Query 305 RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS 364 RCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+ H Sbjct 4708 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVDTHRY 4767 Query 365 RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV 424 RLS K+LL+YAADPAMH AS + LLD RT CFSVAA+T+ + FQTVKPGNFN+DFY+F Sbjct 4768 RLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFYEFVK 4827 Query 425 SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD 484 SKG FKEGS+V+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF+ YD Sbjct 4828 SKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD 4887 Query 485 GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL 544 GGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+Q+ ++AYTKRNV+PT+TQMNL Sbjct 4888 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNL 4947 Query 545 KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT 604 KYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW +ML+ Sbjct 4948 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRH 5007 Query 605 VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS 664 + DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH CCS RFYRLANECAQVLS Sbjct 5008 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLS 5067 Query 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ 724 E+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAVTANV +L++ +G+KI D +RNLQ Sbjct 5068 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQ 5127 Query 725 HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS 784 RLY +YR VD FVNE+Y +L KHFSMMILSDD VVC+NS YA++G +A+I F+ Sbjct 5128 KRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYANKGYIANISAFQQ 5187 Query 785 VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV 844 VLYYQNNVFMSE+KCW E D+T GPHEFCSQHTMLVK DYVYLPYPDPSRILGAGCFV Sbjct 5188 VLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGAGCFV 5247 Query 845 DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS 904 DD++KTD L+IERFVSLAIDAYPL H N+EY VF +YL+YI+KL+++L +LD YS Sbjct 5248 DDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNDLGTQILDSYS 5307 Query 905 VMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 V+L+ + ++ E FY+ MY V+Q Sbjct 5308 VILSTCDGLKFTEESFYKNMYLKSAVMQ 5335 >sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N2) OX=443240 GN=rep PE=3 SV=1 Length=7152 Score = 1299 bits (3361), Expect = 0.0, Method: Compositional matrix adjust. Identities = 622/928 (67%), Positives = 735/928 (79%), Gaps = 5/928 (1%) Query 6 SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN 64 +FLNRV G S ARL PC +G STDV RAFDI N AG + K NCCRFQ D+D N Sbjct 4432 NFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRIDDDGN 4491 Query 65 LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM 124 +D +FVVKR Y E+T Y L K C VA+HDFF F IDG VPHI R+ L+KYTM Sbjct 4492 KLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKNLSKYTM 4551 Query 125 ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ 184 DL YALRHFD +C L EIL Y C + YF+KKDWYDFVENPDI+ +Y LG + Sbjct 4552 LDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGPIFNR 4611 Query 185 ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI 244 ALL TV F D + G+VGVLTLDNQDL G WYDFGDFIQT PG GV V DSYYS +MP+ Sbjct 4612 ALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSYMMPM 4671 Query 245 LTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD 304 LT+ L E V+ Y ++DL++YDFT+ +L+LF++YFKYW YHPN V+C +D Sbjct 4672 LTMCHVLDCELFVN----DSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVDCDND 4727 Query 305 RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS 364 RCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+ H Sbjct 4728 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVDTHRY 4787 Query 365 RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV 424 RLS K+LL+YAADPAMH AS + LLD RT CFSVAA+T+ + FQTVKPGNFN+DFY+F Sbjct 4788 RLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFYEFVK 4847 Query 425 SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD 484 SKG FKEGS+V+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF+ YD Sbjct 4848 SKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD 4907 Query 485 GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL 544 GGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+Q+ ++AYTKRNV+PT+TQMNL Sbjct 4908 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNL 4967 Query 545 KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT 604 KYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW +ML+ Sbjct 4968 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRH 5027 Query 605 VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS 664 + DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH CCS RFYRLANECAQVLS Sbjct 5028 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLS 5087 Query 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ 724 E+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAVTANV +L++ +G+KI D +RNLQ Sbjct 5088 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQ 5147 Query 725 HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS 784 RLY +YR VD FVNE+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I F+ Sbjct 5148 KRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANISVFQQ 5207 Query 785 VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV 844 VLYYQNNVFMSE+KCW E D+T GPHEFCSQHTMLVK DYVYLPYPDPSRILGAGCFV Sbjct 5208 VLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGAGCFV 5267 Query 845 DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS 904 DD++KTD L+IERFVSLAIDAYPL H N+EY VF +YL+YI+KL+++L +LD YS Sbjct 5268 DDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGNQILDSYS 5327 Query 905 VMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 V+L+ + ++ + FY+ MY V+Q Sbjct 5328 VILSTCDGLKFTDESFYKNMYLKSAVMQ 5355 >sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavirus OC43 OX=31631 GN=rep PE=1 SV=1 Length=7095 Score = 1296 bits (3354), Expect = 0.0, Method: Compositional matrix adjust. Identities = 615/928 (66%), Positives = 733/928 (79%), Gaps = 5/928 (1%) Query 6 SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN 64 +FLNRV G S ARL PC +G STDV RAFDIYN VAG LK NCCRFQ DE+ + Sbjct 4374 NFLNRVRGASVDARLVPCASGLSTDVQLRAFDIYNASVAGIGLHLKVNCCRFQRVDENGD 4433 Query 65 LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM 124 +D +FVVKR + Y E Y +KDC VA+HDFF F ++G VPHI R+ LTKYTM Sbjct 4434 KLDQFFVVKRTDLTIYNREMKCYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLTKYTM 4493 Query 125 ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ 184 DL YALRHFD +C L +IL Y C+ YF KKDWYDFVENPDI+ VY LG + Sbjct 4494 LDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGPIFNR 4553 Query 185 ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI 244 AL+ +F D + G+VGVLTLDNQDLNG WYDFGD++ PG GV + DSYYS +MP+ Sbjct 4554 ALVSATEFADKLVEVGLVGVLTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSYIMPM 4613 Query 245 LTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD 304 LT+ AL E +V+ Y +DL++YDFT+ +L+LF++YFK+W YHPN V+C DD Sbjct 4614 LTMCHALDCELYVN----NAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTVDCQDD 4669 Query 305 RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS 364 RCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELG+V N DV+ H Sbjct 4670 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDVDTHRY 4729 Query 365 RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV 424 RLS K+LL+YAADPA+H AS + L D RT CFSVAA+T+ V FQTVKPGNFN+DFYDF + Sbjct 4730 RLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYDFVL 4789 Query 425 SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD 484 SKG KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF+ YD Sbjct 4790 SKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD 4849 Query 485 GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL 544 GGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+TQMNL Sbjct 4850 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNL 4909 Query 545 KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT 604 KYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW +ML+ Sbjct 4910 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRR 4969 Query 605 VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS 664 + DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH TCCS S RFYRLANECAQVLS Sbjct 4970 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHETCCSQSDRFYRLANECAQVLS 5029 Query 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ 724 E+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAV+ANV AL+S +GNKI D +R LQ Sbjct 5030 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLSIRALQ 5089 Query 725 HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS 784 RLY +YR+ VD+ FV E+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I F+ Sbjct 5090 KRLYSHVYRSDKVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANISAFQQ 5149 Query 785 VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV 844 VLYYQNNVFMSE+KCW E D+ GPHEFCSQHTMLVK D VYLPYP+PSRILGAGCFV Sbjct 5150 VLYYQNNVFMSESKCWVEHDINNGPHEFCSQHTMLVKMDGDDVYLPYPNPSRILGAGCFV 5209 Query 845 DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS 904 DD++KTD L+IERFVSLAIDAYPL H N+EY VF +YL YI+KL+++L +LD YS Sbjct 5210 DDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLAYIKKLYNDLGNQILDSYS 5269 Query 905 VMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 V+L+ + ++ + FY+ MY V+Q Sbjct 5270 VILSTCDGQKFTDESFYKNMYLRSAVMQ 5297 >sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavirus (strain 98TXSF-110-LUN) OX=233264 GN=rep PE=3 SV=1 Length=7094 Score = 1294 bits (3348), Expect = 0.0, Method: Compositional matrix adjust. Identities = 613/928 (66%), Positives = 732/928 (79%), Gaps = 5/928 (1%) Query 6 SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN 64 +FLNRV G S ARL PC +G STDV RAFDI N VAG LK NCCRFQ DE+ + Sbjct 4374 NFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICNASVAGIGLHLKVNCCRFQRVDENGD 4433 Query 65 LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM 124 +D +FVVKR + Y E Y +KDC VA+HDFF F ++G VPHI R+ LTKYTM Sbjct 4434 KLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLTKYTM 4493 Query 125 ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ 184 DL YALRHFD +C L +IL Y C+ YF KKDWYDFVENPDI+ VY LG + Sbjct 4494 LDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGPIFNR 4553 Query 185 ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI 244 AL+ +F D + G+VG+LTLDNQDLNG WYDFGD++ PG GV + DSYYS +MP+ Sbjct 4554 ALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSYMMPM 4613 Query 245 LTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD 304 LT+ AL E +V+ Y +DL++YDFT+ +L+LF++YFK+W YHPN V+C DD Sbjct 4614 LTMCHALDCELYVN----NAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTVDCQDD 4669 Query 305 RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS 364 RCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELG+V N DV+ H Sbjct 4670 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDVDTHRY 4729 Query 365 RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV 424 RLS K+LL+YAADPA+H AS + L D RT CFSVAA+T+ V FQTVKPGNFN+DFYDF + Sbjct 4730 RLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYDFIL 4789 Query 425 SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD 484 SKG KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF+ YD Sbjct 4790 SKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD 4849 Query 485 GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL 544 GGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+TQMNL Sbjct 4850 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNL 4909 Query 545 KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT 604 KYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW +ML+ Sbjct 4910 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRR 4969 Query 605 VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS 664 + DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH CCS S RFYRLANECAQVLS Sbjct 4970 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANECAQVLS 5029 Query 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ 724 E+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAV+ANV AL+S +GNKI D +R LQ Sbjct 5030 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLSIRALQ 5089 Query 725 HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS 784 RLY +YR+ VD+ FV E+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I F+ Sbjct 5090 KRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANISAFQQ 5149 Query 785 VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV 844 VLYYQNNVFMSE+KCW E D+ GPHEFCSQHTMLVK D VYLPYPDPSRILGAGCFV Sbjct 5150 VLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVYLPYPDPSRILGAGCFV 5209 Query 845 DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS 904 DD++KTD L+IERFVSLAIDAYPL H N+EY VF +YL+YI+KL+++L +LD YS Sbjct 5210 DDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNDLGNQILDSYS 5269 Query 905 VMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 V+L+ + ++ + FY+ MY V+Q Sbjct 5270 VILSTCDGQKFTDESFYKNMYLRSAVMQ 5297 >sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavirus (strain 98TXSF-110-ENT) OX=233262 GN=rep PE=3 SV=1 Length=7094 Score = 1294 bits (3348), Expect = 0.0, Method: Compositional matrix adjust. Identities = 613/928 (66%), Positives = 732/928 (79%), Gaps = 5/928 (1%) Query 6 SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN 64 +FLNRV G S ARL PC +G STDV RAFDI N VAG LK NCCRFQ DE+ + Sbjct 4374 NFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICNASVAGIGLHLKVNCCRFQRVDENGD 4433 Query 65 LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM 124 +D +FVVKR + Y E Y +KDC VA+HDFF F ++G VPHI R+ LTKYTM Sbjct 4434 KLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLTKYTM 4493 Query 125 ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ 184 DL YALRHFD +C L +IL Y C+ YF KKDWYDFVENPDI+ VY LG + Sbjct 4494 LDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGPIFNR 4553 Query 185 ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI 244 AL+ +F D + G+VG+LTLDNQDLNG WYDFGD++ PG GV + DSYYS +MP+ Sbjct 4554 ALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSYMMPM 4613 Query 245 LTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD 304 LT+ AL E +V+ Y +DL++YDFT+ +L+LF++YFK+W YHPN V+C DD Sbjct 4614 LTMCHALDCELYVN----NAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTVDCQDD 4669 Query 305 RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS 364 RCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELG+V N DV+ H Sbjct 4670 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDVDTHRY 4729 Query 365 RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV 424 RLS K+LL+YAADPA+H AS + L D RT CFSVAA+T+ V FQTVKPGNFN+DFYDF + Sbjct 4730 RLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYDFIL 4789 Query 425 SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD 484 SKG KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF+ YD Sbjct 4790 SKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD 4849 Query 485 GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL 544 GGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+TQMNL Sbjct 4850 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNL 4909 Query 545 KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT 604 KYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW +ML+ Sbjct 4910 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRR 4969 Query 605 VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS 664 + DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH CCS S RFYRLANECAQVLS Sbjct 4970 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANECAQVLS 5029 Query 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ 724 E+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAV+ANV AL+S +GNKI D +R LQ Sbjct 5030 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLSIRALQ 5089 Query 725 HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS 784 RLY +YR+ VD+ FV E+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I F+ Sbjct 5090 KRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANISAFQQ 5149 Query 785 VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV 844 VLYYQNNVFMSE+KCW E D+ GPHEFCSQHTMLVK D VYLPYPDPSRILGAGCFV Sbjct 5150 VLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVYLPYPDPSRILGAGCFV 5209 Query 845 DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS 904 DD++KTD L+IERFVSLAIDAYPL H N+EY VF +YL+YI+KL+++L +LD YS Sbjct 5210 DDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNDLGNQILDSYS 5269 Query 905 VMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 V+L+ + ++ + FY+ MY V+Q Sbjct 5270 VILSTCDGQKFTDESFYKNMYLRSAVMQ 5297 >sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavirus (strain JHM) OX=11144 GN=rep PE=1 SV=1 Length=7180 Score = 1292 bits (3344), Expect = 0.0, Method: Compositional matrix adjust. Identities = 613/928 (66%), Positives = 737/928 (79%), Gaps = 5/928 (1%) Query 6 SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN 64 +FLNRV G S ARL PC +G TDV RAFDI N AG + K NC RFQ DE+ N Sbjct 4465 NFLNRVRGTSVNARLVPCASGLDTDVQLRAFDICNANRAGIGLYYKVNCFRFQRVDEEGN 4524 Query 65 LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM 124 +D +FVVKR Y E+ Y L KDC VA+H+FF F ++G VPHI R+ L+K+TM Sbjct 4525 KLDKFFVVKRTNLEVYNKEKECYELTKDCGVVAEHEFFTFDVEGSRVPHIVRKDLSKFTM 4584 Query 125 ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ 184 DL YALRHFD +C TLKEIL+TY CD+ YF KKDWYDFVENPDI+ VY LG + Sbjct 4585 LDLCYALRHFDRNDCSTLKEILLTYAECDESYFQKKDWYDFVENPDIINVYKKLGPIFNR 4644 Query 185 ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI 244 ALL T F D + AG+VGVLTLDNQDL G WYDFGDF++T P GV V DSYYS +MP+ Sbjct 4645 ALLNTANFADTLVEAGLVGVLTLDNQDLYGQWYDFGDFVKTVPCCGVAVADSYYSYMMPM 4704 Query 245 LTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD 304 LT+ AL +E V+ Y ++DL++YDFT+ +L+LF++YFK+W TYHPN C DD Sbjct 4705 LTMCHALDSELFVN----GTYREFDLVQYDFTDFKLELFNKYFKHWSMTYHPNTSECEDD 4760 Query 305 RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS 364 RCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+ H Sbjct 4761 RCIIHCANFNILFSMVLPKTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNMDVDTHRY 4820 Query 365 RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV 424 RLS K+LL+YAADPA+H AS + LLD RT CFSVAA+T+ V FQTVKPGNFN+DFY+F + Sbjct 4821 RLSLKDLLLYAADPALHVASASALLDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYEFIL 4880 Query 425 SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD 484 SKG KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFVVEVV+KYF+ Y+ Sbjct 4881 SKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVVEVVNKYFEIYE 4940 Query 485 GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL 544 GGCI A QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+TQMNL Sbjct 4941 GGCIPATQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNL 5000 Query 545 KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT 604 KYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW +ML+ Sbjct 5001 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRR 5060 Query 605 VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS 664 + DV++P LMGWDYPKCDRAMPN+LRI++SLVLARKH +CCS + RFYRLANECAQVL Sbjct 5061 LIKDVDSPVLMGWDYPKCDRAMPNILRIVSSLVLARKHDSCCSHTDRFYRLANECAQVLG 5120 Query 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ 724 E+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAV+ANV +L++ +G+KI D +R LQ Sbjct 5121 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCSLMACNGHKIEDLSIRELQ 5180 Query 725 HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS 784 RLY +YR VD FV+E+Y +L KHFSM+ILSDD VVC+NS +AS+G +A+I +F+ Sbjct 5181 KRLYSNVYRADHVDPAFVSEYYEFLNKHFSMIILSDDGVVCYNSEFASKGYIANISDFQQ 5240 Query 785 VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV 844 VLYYQNNVFMSEAKCW ETD+ KGPHEFCSQHTMLVK D VYLPYPDPSRILGAGCFV Sbjct 5241 VLYYQNNVFMSEAKCWVETDIEKGPHEFCSQHTMLVKMDGDEVYLPYPDPSRILGAGCFV 5300 Query 845 DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS 904 DD++KTD L+IERFVSLAIDAYPL H N EY +VF +YL+YI+KL+++L +LD S Sbjct 5301 DDLLKTDSVLLIERFVSLAIDAYPLVYHENPEYQNVFRVYLEYIKKLYNDLGNQILDSIS 5360 Query 905 VMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 V+L+ + ++ + FY+ MY V+Q Sbjct 5361 VILSTCDGQKFTDETFYKNMYLRSAVMQ 5388 >sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavirus (strain Quebec) OX=11133 GN=rep PE=3 SV=1 Length=7059 Score = 1290 bits (3339), Expect = 0.0, Method: Compositional matrix adjust. Identities = 613/928 (66%), Positives = 730/928 (79%), Gaps = 5/928 (1%) Query 6 SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN 64 +FLNRV G S ARL PC +G STDV RAFDI N VAG LK NCCRFQ DE+ + Sbjct 4374 NFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICNASVAGIGLHLKVNCCRFQRVDENGD 4433 Query 65 LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM 124 +D +FVVKR + Y E Y +KDC VA+HDFF F ++G VPHI R+ LTKYTM Sbjct 4434 KLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLTKYTM 4493 Query 125 ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ 184 DL YALRHFD +C L +IL Y C+ YF KKDWYDFVENPDI+ VY LG + Sbjct 4494 LDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGPIFNR 4553 Query 185 ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI 244 AL+ +F D + G+VG+LTLDNQDLNG WYDFGD++ PG GV + DSYYS +MP+ Sbjct 4554 ALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSYMMPM 4613 Query 245 LTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD 304 LT+ AL E +V+ Y +DL++YDFT+ +L+LF++YFK+W YHPN V+C DD Sbjct 4614 LTMCHALDCELYVN----NAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTVDCQDD 4669 Query 305 RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS 364 RCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELG+V N DV+ H Sbjct 4670 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDVDTHRY 4729 Query 365 RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV 424 RLS K+LL+YAADPA+H AS + L D RT CFSVAA+T+ V FQTVKPGNFN+DFYDF + Sbjct 4730 RLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYDFIL 4789 Query 425 SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD 484 SKG KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF+ YD Sbjct 4790 SKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD 4849 Query 485 GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL 544 GGCI A QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+TQMNL Sbjct 4850 GGCIPAAQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNL 4909 Query 545 KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT 604 KYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW +ML+ Sbjct 4910 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRR 4969 Query 605 VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS 664 + DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH CCS S RFYRLANECAQVLS Sbjct 4970 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANECAQVLS 5029 Query 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ 724 E+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAV+ANV AL+S +GNKI D +R LQ Sbjct 5030 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLSIRALQ 5089 Query 725 HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS 784 RLY +YR+ VD+ FV E+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I F+ Sbjct 5090 KRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANISAFQQ 5149 Query 785 VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV 844 VLYYQNNVFMSE+KCW E D+ GPHEFCSQHTMLVK D VYLPYP PSRILGAGCFV Sbjct 5150 VLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVYLPYPVPSRILGAGCFV 5209 Query 845 DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS 904 DD++KTD L+IERFVSLAIDAYPL H N+EY VF +YL+YI+KL++EL +LD YS Sbjct 5210 DDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNELGNQILDSYS 5269 Query 905 VMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 V+L+ + ++ + FY+ MY V+Q Sbjct 5270 VILSTCDGQKFTDESFYKNMYLRSAVMQ 5297 >sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavirus (strain Mebus) OX=11132 GN=rep PE=3 SV=1 Length=7094 Score = 1287 bits (3331), Expect = 0.0, Method: Compositional matrix adjust. Identities = 612/928 (66%), Positives = 730/928 (79%), Gaps = 5/928 (1%) Query 6 SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN 64 +FLNRV G S ARL PC +G STDV RAFDI N VAG LK NCCRFQ DE+ + Sbjct 4374 NFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICNASVAGIGLHLKVNCCRFQRVDENGD 4433 Query 65 LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM 124 +D +FVVKR + Y E Y +KDC VA+HDFF F ++G VPHI R+ LTKYTM Sbjct 4434 KLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLTKYTM 4493 Query 125 ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ 184 DL YALRHFD +C L +IL Y C+ YF KKDWYDFVENPDI+ VY LG + Sbjct 4494 LDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGPIFNR 4553 Query 185 ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI 244 AL+ +F D + G+VG+LTLDNQDLNG WYDFGD++ PG GV + DSYYS +MP+ Sbjct 4554 ALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSYMMPM 4613 Query 245 LTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD 304 LT+ AL E +V+ Y +DL++YDFT+ +L+LF++YFK+W YHPN V+C DD Sbjct 4614 LTMCHALDCELYVN----NAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTVDCQDD 4669 Query 305 RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS 364 RCI+ CANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELG+V N DV+ H Sbjct 4670 RCIIRCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDVDTHRY 4729 Query 365 RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV 424 RLS K+LL+YAADPA+H AS + L D RT CFSVAA+T+ V FQTVKPGNFN+DFYDF + Sbjct 4730 RLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYDFIL 4789 Query 425 SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD 484 SKG KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF+ YD Sbjct 4790 SKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD 4849 Query 485 GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL 544 GGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+TQMNL Sbjct 4850 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNL 4909 Query 545 KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT 604 KYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW +ML+ Sbjct 4910 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRR 4969 Query 605 VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS 664 + DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH CCS S RFYRLANE AQVLS Sbjct 4970 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANEYAQVLS 5029 Query 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ 724 E+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAV+ANV AL+S +GNKI D +R LQ Sbjct 5030 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLSIRALQ 5089 Query 725 HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS 784 RLY +YR+ VD+ FV E+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I F+ Sbjct 5090 KRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANISAFQQ 5149 Query 785 VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV 844 VLYYQNNVFMSE+KCW E D+ GPHEFCSQHTMLVK D VYLPYPDPSRILGAGCFV Sbjct 5150 VLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVYLPYPDPSRILGAGCFV 5209 Query 845 DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS 904 DD++KTD L+IERFVSLAIDAYPL H N+EY VF +YL+YI+KL++EL +LD YS Sbjct 5210 DDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNELGNQILDSYS 5269 Query 905 VMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 V+L+ + ++ + FY+ MY V+Q Sbjct 5270 VILSTCDGQKFTDESFYKNMYLRSAVMQ 5297 >sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectious bronchitis virus (strain Beaudette CK) OX=160235 GN=rep PE=3 SV=1 Length=6629 Score = 1186 bits (3068), Expect = 0.0, Method: Compositional matrix adjust. Identities = 582/936 (62%), Positives = 707/936 (76%), Gaps = 13/936 (1%) Query 5 QSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQE--KDED 62 +++LNRV G S ARL P +G DVV RAFD+ N + AG + LK NC RFQE ED Sbjct 3938 KNYLNRVRGSSEARLIPLASGCDPDVVKRAFDVCNKESAGMFQNLKRNCARFQELRDTED 3997 Query 63 DNL--IDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 NL +DSYFVVK+ T SNY+HE++ Y LK A HDFF F + + +ISRQRLT Sbjct 3998 GNLEYLDSYFVVKQTTPSNYEHEKSCYEDLKS-EVTADHDFFVFNKN---IYNISRQRLT 4053 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDD---DYFNK-KDWYDFVENPDILRVYA 176 KYTM D YALRHFD +C+ LKEILVTY C +D +F + KDWYD +EN + A Sbjct 4054 KYTMMDFCYALRHFDPKDCEVLKEILVTYGCIEDYHPKWFEENKDWYDPIENSKYYVMLA 4113 Query 177 NLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDS 236 +G VR+ALL ++F + M G VGV+TLDNQDLNG +YDFGDF +T PG+GVPV D+ Sbjct 4114 KMGPIVRRALLNAIEFGNLMVEKGYVGVITLDNQDLNGKFYDFGDFQKTAPGAGVPVFDT 4173 Query 237 YYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHP 296 YYS +MPI+ +T AL E + + D+ K Y +DLLKYD+TEE+ +LF +YFKYWDQ YHP Sbjct 4174 YYSYMMPIIAMTDALAPERYFEYDVHKGYKSYDLLKYDYTEEKQELFQKYFKYWDQEYHP 4233 Query 297 NCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHN 356 NC +C DDRC++HCANFN+LFST+ P TSFG L RK+FVDGVPF+ + GYH +ELGV+ N Sbjct 4234 NCRDCSDDRCLIHCANFNILFSTLIPQTSFGNLCRKVFVDGVPFIATCGYHSKELGVIMN 4293 Query 357 QDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFN 416 QD + S++ +L+ + DPA+ + N L+D RT+CFSV ALT+ + QTVKPG+FN Sbjct 4294 QDNTMSFSKMGLSQLMQFVGDPALLVGTSNNLVDLRTSCFSVCALTSGITHQTVKPGHFN 4353 Query 417 KDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVV 476 KDFYDFA G FKEGSS+ LKHFF+ Q GNAAI+DYDYYRYN PTM DI QLLF +EV Sbjct 4354 KDFYDFAEKAGMFKEGSSIPLKHFFYPQTGNAAINDYDYYRYNRPTMFDICQLLFCLEVT 4413 Query 477 DKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVI 536 KYF+CY+GGCI A+QV+VNNLDKSAG+PFNK+GKARLYY+ MS E+QD LF TK+NV+ Sbjct 4414 SKYFECYEGGCIPASQVVVNNLDKSAGYPFNKFGKARLYYE-MSLEEQDQLFEITKKNVL 4472 Query 537 PTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYG 596 PTITQMNLKYAISAKNRARTVAGVSI STMTNRQFHQK+LKSI TR A+VVIGT+KFYG Sbjct 4473 PTITQMNLKYAISAKNRARTVAGVSILSTMTNRQFHQKILKSIVNTRNASVVIGTTKFYG 4532 Query 597 GWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLA 656 GW NML+ + VE+P LMGWDYPKCDRAMPN+LRI ASLVLARKHT CCS S R YRL Sbjct 4533 GWDNMLRNLIQGVEDPILMGWDYPKCDRAMPNLLRIAASLVLARKHTNCCSWSERIYRLY 4592 Query 657 NECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA 716 NECAQVLSE V+ G +YVKPGGTSSGDATTAYANSVFNI QA +ANV LLS I Sbjct 4593 NECAQVLSETVLATGGIYVKPGGTSSGDATTAYANSVFNIIQATSANVARLLSVITRDIV 4652 Query 717 DKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLV 776 +++LQ+ LY+ +YR + D FV +FY+YL K+FS+MILSDD VVC+N+T A QGLV Sbjct 4653 YDNIKSLQYELYQQVYRRVNFDPAFVEKFYSYLCKNFSLMILSDDGVVCYNNTLAKQGLV 4712 Query 777 ASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSR 836 A I F+ VLYYQNNVFM+++KCW E DL KGPHEFCSQHTMLV+ + YLPYPDPSR Sbjct 4713 ADISGFREVLYYQNNVFMADSKCWVEPDLEKGPHEFCSQHTMLVEVDGEPKYLPYPDPSR 4772 Query 837 ILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELT 896 ILGA FVDD+ KT+ ++ER+++LAIDAYPL H N+EY VF + L YIRKL+ EL+ Sbjct 4773 ILGACVFVDDVDKTEPVAVMERYIALAIDAYPLVHHENEEYKKVFFVLLAYIRKLYQELS 4832 Query 897 GHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 +ML YS ++ D S++WE EFYE MY T LQ Sbjct 4833 QNMLMDYSFVMDIDKGSKFWEQEFYENMYRAPTTLQ 4868 >sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious bronchitis virus (strain Beaudette) OX=11122 GN=rep PE=1 SV=1 Length=6629 Score = 1186 bits (3068), Expect = 0.0, Method: Compositional matrix adjust. Identities = 582/936 (62%), Positives = 707/936 (76%), Gaps = 13/936 (1%) Query 5 QSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQE--KDED 62 +++LNRV G S ARL P +G DVV RAFD+ N + AG + LK NC RFQE ED Sbjct 3938 KNYLNRVRGSSEARLIPLASGCDPDVVKRAFDVCNKESAGMFQNLKRNCARFQELRDTED 3997 Query 63 DNL--IDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 NL +DSYFVVK+ T SNY+HE++ Y LK A HDFF F + + +ISRQRLT Sbjct 3998 GNLEYLDSYFVVKQTTPSNYEHEKSCYEDLKS-EVTADHDFFVFNKN---IYNISRQRLT 4053 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDD---DYFNK-KDWYDFVENPDILRVYA 176 KYTM D YALRHFD +C+ LKEILVTY C +D +F + KDWYD +EN + A Sbjct 4054 KYTMMDFCYALRHFDPKDCEVLKEILVTYGCIEDYHPKWFEENKDWYDPIENSKYYVMLA 4113 Query 177 NLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDS 236 +G VR+ALL ++F + M G VGV+TLDNQDLNG +YDFGDF +T PG+GVPV D+ Sbjct 4114 KMGPIVRRALLNAIEFGNLMVEKGYVGVITLDNQDLNGKFYDFGDFQKTAPGAGVPVFDT 4173 Query 237 YYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHP 296 YYS +MPI+ +T AL E + + D+ K Y +DLLKYD+TEE+ +LF +YFKYWDQ YHP Sbjct 4174 YYSYMMPIIAMTDALAPERYFEYDVHKGYKSYDLLKYDYTEEKQELFQKYFKYWDQEYHP 4233 Query 297 NCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHN 356 NC +C DDRC++HCANFN+LFST+ P TSFG L RK+FVDGVPF+ + GYH +ELGV+ N Sbjct 4234 NCRDCSDDRCLIHCANFNILFSTLIPQTSFGNLCRKVFVDGVPFIATCGYHSKELGVIMN 4293 Query 357 QDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFN 416 QD + S++ +L+ + DPA+ + N L+D RT+CFSV ALT+ + QTVKPG+FN Sbjct 4294 QDNTMSFSKMGLSQLMQFVGDPALLVGTSNNLVDLRTSCFSVCALTSGITHQTVKPGHFN 4353 Query 417 KDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVV 476 KDFYDFA G FKEGSS+ LKHFF+ Q GNAAI+DYDYYRYN PTM DI QLLF +EV Sbjct 4354 KDFYDFAEKAGMFKEGSSIPLKHFFYPQTGNAAINDYDYYRYNRPTMFDICQLLFCLEVT 4413 Query 477 DKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVI 536 KYF+CY+GGCI A+QV+VNNLDKSAG+PFNK+GKARLYY+ MS E+QD LF TK+NV+ Sbjct 4414 SKYFECYEGGCIPASQVVVNNLDKSAGYPFNKFGKARLYYE-MSLEEQDQLFEITKKNVL 4472 Query 537 PTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYG 596 PTITQMNLKYAISAKNRARTVAGVSI STMTNRQFHQK+LKSI TR A+VVIGT+KFYG Sbjct 4473 PTITQMNLKYAISAKNRARTVAGVSILSTMTNRQFHQKILKSIVNTRNASVVIGTTKFYG 4532 Query 597 GWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLA 656 GW NML+ + VE+P LMGWDYPKCDRAMPN+LRI ASLVLARKHT CCS S R YRL Sbjct 4533 GWDNMLRNLIQGVEDPILMGWDYPKCDRAMPNLLRIAASLVLARKHTNCCSWSERIYRLY 4592 Query 657 NECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA 716 NECAQVLSE V+ G +YVKPGGTSSGDATTAYANSVFNI QA +ANV LLS I Sbjct 4593 NECAQVLSETVLATGGIYVKPGGTSSGDATTAYANSVFNIIQATSANVARLLSVITRDIV 4652 Query 717 DKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLV 776 +++LQ+ LY+ +YR + D FV +FY+YL K+FS+MILSDD VVC+N+T A QGLV Sbjct 4653 YDNIKSLQYELYQQVYRRVNFDPAFVEKFYSYLCKNFSLMILSDDGVVCYNNTLAKQGLV 4712 Query 777 ASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSR 836 A I F+ VLYYQNNVFM+++KCW E DL KGPHEFCSQHTMLV+ + YLPYPDPSR Sbjct 4713 ADISGFREVLYYQNNVFMADSKCWVEPDLEKGPHEFCSQHTMLVEVDGEPKYLPYPDPSR 4772 Query 837 ILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELT 896 ILGA FVDD+ KT+ ++ER+++LAIDAYPL H N+EY VF + L YIRKL+ EL+ Sbjct 4773 ILGACVFVDDVDKTEPVAVMERYIALAIDAYPLVHHENEEYKKVFFVLLAYIRKLYQELS 4832 Query 897 GHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 +ML YS ++ D S++WE EFYE MY T LQ Sbjct 4833 QNMLMDYSFVMDIDKGSKFWEQEFYENMYRAPTTLQ 4868 >sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus 512/2005 OX=693999 GN=rep PE=3 SV=1 Length=6793 Score = 1184 bits (3063), Expect = 0.0, Method: Compositional matrix adjust. Identities = 560/929 (60%), Positives = 707/929 (76%), Gaps = 6/929 (1%) Query 5 QSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN 64 +LNRV G SAARL P G+ T V+RAFD+YN VA +KFLK NC R + D+ D Sbjct 4115 SGYLNRVRGSSAARLEPL-NGSDTHHVFRAFDVYNRDVACISKFLKVNCVRLKNLDKHD- 4172 Query 65 LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM 124 ++++VK+ T S +HE++IYNL+ DC AVAKHDFF ++ + ++ RQ LT+YTM Sbjct 4173 ---AFWIVKKCTKSVMEHEQSIYNLISDCGAVAKHDFFTWKEGRSVYGNVCRQDLTEYTM 4229 Query 125 ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ 184 DL YALR+FDE NC+TLK+ILV CD+ YF+ K W+D VEN D+ RVYA LG V + Sbjct 4230 MDLCYALRNFDENNCETLKKILVVVGACDESYFDNKLWFDPVENEDVHRVYAKLGTIVAR 4289 Query 185 ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI 244 A+LK V++CDAM GIVGV+TLDNQDLNG++YDFGDF+ + G GVP+ SYYS +MP+ Sbjct 4290 AMLKCVKYCDAMVEQGIVGVITLDNQDLNGDFYDFGDFVTSVKGMGVPICTSYYSYMMPV 4349 Query 245 LTLTRALTAESHVDTDL-TKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLD 303 + +T L +E + +D+ + + +DLL YDFTE ++ LF++YFK+W QTYHPNC +C D Sbjct 4350 MGMTNCLASECFIKSDIFGEDFRTFDLLAYDFTEHKVNLFNKYFKHWGQTYHPNCEDCHD 4409 Query 304 DRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHS 363 + CI+HCANFN LF+T P T+FGPL RK ++DGVP V + GYHF++LG+V N+D+NLHS Sbjct 4410 ESCIVHCANFNTLFATTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNKDLNLHS 4469 Query 364 SRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFA 423 SRL+ ELL + ADP++ AS L+DKRT CFSVAAL + QTVKPG+FN++FYDF Sbjct 4470 SRLTINELLQFCADPSLLIASSPALVDKRTVCFSVAALGTGMTNQTVKPGHFNREFYDFL 4529 Query 424 VSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCY 483 S+GFF+EGS + LKHFFFAQ G+AA+ D+DYYRYN T+ DI Q V ++V YF Y Sbjct 4530 RSQGFFEEGSELTLKHFFFAQKGDAAVRDFDYYRYNRTTVLDICQARVVYQIVQCYFGMY 4589 Query 484 DGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMN 543 +GGCI A +VIVNNL+KSAG+PFNK+GKA LYYDS+SYE+QD L+AYTKRN+IPT+TQ+N Sbjct 4590 EGGCITAKEVIVNNLNKSAGYPFNKFGKAGLYYDSLSYEEQDDLYAYTKRNIIPTMTQLN 4649 Query 544 LKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLK 603 LKYAIS K+RARTV GVS+ STMT RQ+HQK LKSI TRGA+VVIGT+KFYGGW NMLK Sbjct 4650 LKYAISGKDRARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWDNMLK 4709 Query 604 TVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL 663 T+ DVENPHLMGWDYPKCDRA+PNM+R++++++L KH CCS S R+YRL NE AQVL Sbjct 4710 TLIKDVENPHLMGWDYPKCDRALPNMIRMISAMILGSKHVNCCSSSDRYYRLCNELAQVL 4769 Query 664 SEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNL 723 +EMV G YVKPGGT+SGDATTAYANSVFNI QA +ANVN LLS D N + V+ L Sbjct 4770 TEMVYSNGGFYVKPGGTTSGDATTAYANSVFNIFQATSANVNRLLSVDSNTCNNIEVKQL 4829 Query 724 QHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFK 783 Q +LY+C YR+ VD FV E++ YLRKHFSMMILSDD VVC+NS YA+ G VA + FK Sbjct 4830 QRKLYDCCYRSSSVDQSFVEEYFGYLRKHFSMMILSDDGVVCYNSEYAALGYVADLNAFK 4889 Query 784 SVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCF 843 +VLYYQNNVFMS +KCW E D+ KGPHEFCSQHTM + D YLPYPDPSRIL AG F Sbjct 4890 AVLYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKDGTYYLPYPDPSRILSAGVF 4949 Query 844 VDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMY 903 VDDIVKTD +++ER+VSLAIDAYPL+KH N EY VF + L +++ L+ L +LD + Sbjct 4950 VDDIVKTDPVILLERYVSLAIDAYPLSKHDNPEYRRVFTVMLDWVKHLYKTLNQGVLDSF 5009 Query 904 SVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 SV L D T+++W+ FY +MY +VLQ Sbjct 5010 SVTLLEDATAKFWDESFYASMYEQSSVLQ 5038 >sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious bronchitis virus (strain M41) OX=11127 GN=rep PE=1 SV=1 Length=6631 Score = 1182 bits (3057), Expect = 0.0, Method: Compositional matrix adjust. Identities = 581/936 (62%), Positives = 702/936 (75%), Gaps = 13/936 (1%) Query 5 QSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQE--KDED 62 +++LNRV G S ARL P G DVV RAFD+ N + AG + LK NC RFQE ED Sbjct 3940 KNYLNRVRGSSEARLIPLANGCDPDVVKRAFDVCNKESAGMFQNLKRNCARFQEVRDTED 3999 Query 63 DNL--IDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 NL DSYFVVK+ T SNY+HE+ Y LK A HDFF F + + +ISRQRLT Sbjct 4000 GNLEYCDSYFVVKQTTPSNYEHEKACYEDLKS-EVTADHDFFVFNKN---IYNISRQRLT 4055 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDD---DYFNK-KDWYDFVENPDILRVYA 176 KYTM D YALRHFD +C+ LKEILVTY C +D +F + KDWYD +ENP + A Sbjct 4056 KYTMMDFCYALRHFDPKDCEVLKEILVTYGCIEDYHPKWFEENKDWYDPIENPKYYAMLA 4115 Query 177 NLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDS 236 +G VR+ALL ++F + M G VGV+TLDNQDLNG +YDFGDF +T PG+GVPV D+ Sbjct 4116 KMGPIVRRALLNAIEFGNLMVEKGYVGVITLDNQDLNGKFYDFGDFQKTAPGAGVPVFDT 4175 Query 237 YYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHP 296 YYS +MPI+ +T AL E + + D+ K Y +DLLKYD+TEE+ LF +YFKYWDQ YHP Sbjct 4176 YYSYMMPIIAMTDALAPERYFEYDVHKGYKSYDLLKYDYTEEKQDLFQKYFKYWDQEYHP 4235 Query 297 NCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHN 356 NC +C DDRC++HCANFN+LFST+ P TSFG L RK+FVDGVPF+ + GYH +ELGV+ N Sbjct 4236 NCRDCSDDRCLIHCANFNILFSTLVPQTSFGNLCRKVFVDGVPFIATCGYHSKELGVIMN 4295 Query 357 QDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFN 416 QD + S++ +L+ + DPA+ + N L+D RT+CFSV AL + + QTVKPG+FN Sbjct 4296 QDNTMSFSKMGLSQLMQFVGDPALLVGTSNKLVDLRTSCFSVCALASGITHQTVKPGHFN 4355 Query 417 KDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVV 476 KDFYDFA G FKEGSS+ LKHFF+ Q GNAAI+DYDYYRYN PTM DIRQLLF +EV Sbjct 4356 KDFYDFAEKAGMFKEGSSIPLKHFFYPQTGNAAINDYDYYRYNRPTMFDIRQLLFCLEVT 4415 Query 477 DKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVI 536 KYF+CY+GGCI A+QV+VNNLDKSAG+PFNK+GKARLYY+ MS E+QD LF TK+NV+ Sbjct 4416 SKYFECYEGGCIPASQVVVNNLDKSAGYPFNKFGKARLYYE-MSLEEQDQLFESTKKNVL 4474 Query 537 PTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYG 596 PTITQMNLKYAISAKNRARTVAGVSI STMTNRQFHQK+LKSI TR A VVIGT+KFYG Sbjct 4475 PTITQMNLKYAISAKNRARTVAGVSILSTMTNRQFHQKILKSIVNTRNAPVVIGTTKFYG 4534 Query 597 GWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLA 656 GW NML+ + VE+P LMGWDYPKCDRAMPN+LRI ASLVLARKHT CC+ S R YRL Sbjct 4535 GWDNMLRNLIQGVEDPILMGWDYPKCDRAMPNLLRIAASLVLARKHTNCCTWSERVYRLY 4594 Query 657 NECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA 716 NECAQVLSE V+ G +YVKPGGTSSGDATTAYANSVFNI QA +ANV LLS I Sbjct 4595 NECAQVLSETVLATGGIYVKPGGTSSGDATTAYANSVFNIIQATSANVARLLSVITRDIV 4654 Query 717 DKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLV 776 +++LQ+ LY+ +YR + D FV +FY+YL K+FS+MILSDD VVC+N+T A QGLV Sbjct 4655 YDDIKSLQYELYQQVYRRVNFDPAFVEKFYSYLCKNFSLMILSDDGVVCYNNTLAKQGLV 4714 Query 777 ASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSR 836 A I F+ VLYYQNNVFM+++KCW E DL KGPHEFCSQHTMLV+ + YLPYPDPSR Sbjct 4715 ADISGFREVLYYQNNVFMADSKCWVEPDLEKGPHEFCSQHTMLVEVDGEPRYLPYPDPSR 4774 Query 837 ILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELT 896 IL A FVDD+ KT+ ++ER+++LAIDAYPL H N+EY VF + L YIRKL+ EL+ Sbjct 4775 ILCACVFVDDLDKTESVAVMERYIALAIDAYPLVHHENEEYKKVFFVLLSYIRKLYQELS 4834 Query 897 GHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 +ML YS ++ D S++WE EFYE MY T LQ Sbjct 4835 QNMLMDYSFVMDIDKGSKFWEQEFYENMYRAPTTLQ 4870 >sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemic diarrhea virus (strain CV777) OX=229032 GN=rep PE=1 SV=1 Length=6781 Score = 1174 bits (3037), Expect = 0.0, Method: Compositional matrix adjust. Identities = 556/928 (60%), Positives = 701/928 (76%), Gaps = 6/928 (1%) Query 6 SFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNL 65 ++LNRV G SAARL PC GT T VYRAFDIYN VA KFLK NC R + D+ D Sbjct 4105 AYLNRVRGSSAARLEPC-NGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLKNLDKHD-- 4161 Query 66 IDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMA 125 +++VVKR T S +HE++IY+ L+ C A+A+HDFF ++ + ++ R+ LT+YTM Sbjct 4162 --AFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKDLTEYTMM 4219 Query 126 DLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQA 185 DL YALR+FDE NCD LK IL+ C++ YFN K W+D VEN DI RVYA LG V +A Sbjct 4220 DLCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALLGTIVARA 4279 Query 186 LLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPIL 245 +LK V+FCDAM GIVGV+TLDNQDLNG++YDFGDF + G GVP+ SYYS +MP++ Sbjct 4280 MLKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICTSYYSYMMPVM 4339 Query 246 TLTRALTAESHVDTDL-TKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD 304 +T L +E V +D+ + + +DLL+YDFTE + LF++YFKYW YHPNCV+C D+ Sbjct 4340 GMTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPNCVDCSDE 4399 Query 305 RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS 364 +CI+HCANFN LFST P T+FGPL RK ++DGVP V + GYHF++LG+V N D+NLHSS Sbjct 4400 QCIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNNDLNLHSS 4459 Query 365 RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV 424 RLS ELL + +DPA+ AS L+D+RT CFSVAAL + QTVKPG+FNK+FYDF + Sbjct 4460 RLSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGHFNKEFYDFLL 4519 Query 425 SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD 484 +GFF EGS + LKHFFFAQ +AA+ D+DYYRYN PT+ DI Q V ++V +YFD Y+ Sbjct 4520 EQGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQIVQRYFDIYE 4579 Query 485 GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL 544 GGCI A +V+V NL+KSAG+P NK+GKA LYY+S+SYE+QD L+AYTKRN++PT+TQ+NL Sbjct 4580 GGCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTMTQLNL 4639 Query 545 KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT 604 KYAIS K RARTV GVS+ STMT RQ+HQK LKSI TRGA+VVIGT+KFYGGW NMLK Sbjct 4640 KYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWDNMLKN 4699 Query 605 VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS 664 + VENP LMGWDYPKCDRA+PNM+R++++++L KHTTCCS + RF+RL NE AQVL+ Sbjct 4700 LIDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNELAQVLT 4759 Query 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ 724 E+V G Y+KPGGT+SGDATTAYANSVFNI QAV+ANVN LLS D N + V+ LQ Sbjct 4760 EVVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHNLEVKQLQ 4819 Query 725 HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS 784 +LYEC YR+ VD FV E+Y YLRKHFSMMILSDD VVC+N+ YAS G VA + FK+ Sbjct 4820 RKLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVADLNAFKA 4879 Query 785 VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV 844 VLYYQNNVFMS +KCW E D+ KGPHEFCSQHTM + + YLPYPDPSRIL AG FV Sbjct 4880 VLYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKEGTYYLPYPDPSRILSAGVFV 4939 Query 845 DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS 904 DD+VKTD +++ER+VSLAIDAYPL+KH N EY VF++ L +++ L+ L +L+ +S Sbjct 4940 DDVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNAGVLESFS 4999 Query 905 VMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 V L D+T+++W+ FY MY VLQ Sbjct 5000 VTLLEDSTAKFWDESFYANMYEKSAVLQ 5027 >sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavirus 229E OX=11137 GN=rep PE=1 SV=1 Length=6758 Score = 1163 bits (3009), Expect = 0.0, Method: Compositional matrix adjust. Identities = 546/928 (59%), Positives = 697/928 (75%), Gaps = 6/928 (1%) Query 6 SFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNL 65 S+LNRV G SAARL PC GT D RAFD+YN + K LK+NC RF+ D+DD Sbjct 4073 SYLNRVRGSSAARLEPC-NGTDIDYCVRAFDVYNKDASFIGKNLKSNCVRFKNVDKDD-- 4129 Query 66 IDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMA 125 ++++VKR S HE+++YNLLK C AVAKHDFF + + ++SRQ LTKYTM Sbjct 4130 --AFYIVKRCIKSVMDHEQSMYNLLKGCNAVAKHDFFTWHEGRTIYGNVSRQDLTKYTMM 4187 Query 126 DLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQA 185 DL +ALR+FDE +C+ KEILV CC DYF K+W+D +EN DI RVYA LG+ V A Sbjct 4188 DLCFALRNFDEKDCEVFKEILVLTGCCSTDYFEMKNWFDPIENEDIHRVYAALGKVVANA 4247 Query 186 LLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPIL 245 +LK V FCD M G+VGVLTLDNQDLNGN+YDFGDF+ PG G+P SYYS +MP++ Sbjct 4248 MLKCVAFCDEMVLKGVVGVLTLDNQDLNGNFYDFGDFVLCPPGMGIPYCTSYYSYMMPVM 4307 Query 246 TLTRALTAESHVDTDL-TKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD 304 +T L +E + +D+ + + +DLLKYDFTE + LF++YFKYW Q YHP+CV+C D+ Sbjct 4308 GMTNCLASECFMKSDIFGQDFKTFDLLKYDFTEHKEVLFNKYFKYWGQDYHPDCVDCHDE 4367 Query 305 RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS 364 CILHC+NFN LF+T P T+FGPL RK+F+DGVP V + GYHF++LG+V N+DVN HS+ Sbjct 4368 MCILHCSNFNTLFATTIPNTAFGPLCRKVFIDGVPVVATAGYHFKQLGLVWNKDVNTHST 4427 Query 365 RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV 424 RL+ ELL + DP + AS L+DKRT CFSVAAL+ + QTVKPG+FNK+FYDF Sbjct 4428 RLTITELLQFVTDPTLIVASSPALVDKRTVCFSVAALSTGLTSQTVKPGHFNKEFYDFLR 4487 Query 425 SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD 484 S+GFF EGS + LKHFFF Q G+AAI D+DYYRYN PTM DI Q +V +YFDCY+ Sbjct 4488 SQGFFDEGSELTLKHFFFTQKGDAAIKDFDYYRYNRPTMLDIGQARVAYQVAARYFDCYE 4547 Query 485 GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL 544 GGCI + +V+V NL+KSAG+P NK+GKA LYY+S+SYE+QDA+F+ TKRN++PT+TQ+NL Sbjct 4548 GGCITSREVVVTNLNKSAGWPLNKFGKAGLYYESISYEEQDAIFSLTKRNILPTMTQLNL 4607 Query 545 KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT 604 KYAIS K RARTV GVS+ +TMT RQFHQK LKSI ATR ATVVIGT+KFYGGW NMLK Sbjct 4608 KYAISGKERARTVGGVSLLATMTTRQFHQKCLKSIVATRNATVVIGTTKFYGGWDNMLKN 4667 Query 605 VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS 664 + +DV++P LMGWDYPKCDRAMP+M+R++++++L KH TCC+ S +FYRL+NE AQVL+ Sbjct 4668 LMADVDDPKLMGWDYPKCDRAMPSMIRMLSAMILGSKHVTCCTASDKFYRLSNELAQVLT 4727 Query 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ 724 E+V G Y KPGGT+SGDATTAYANSVFNI QAV++N+N +LS + + + V+ LQ Sbjct 4728 EVVYSNGGFYFKPGGTTSGDATTAYANSVFNIFQAVSSNINCVLSVNSSNCNNFNVKKLQ 4787 Query 725 HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS 784 +LY+ YRN +VD FV++FY YL+KHFSMMILSDD+VVC+N TYA G +A I FK+ Sbjct 4788 RQLYDNCYRNSNVDESFVDDFYGYLQKHFSMMILSDDSVVCYNKTYAGLGYIADISAFKA 4847 Query 785 VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV 844 LYYQN VFMS AKCWTE DL+ GPHEFCSQHTM + + YLPYPDPSRI+ AG FV Sbjct 4848 TLYYQNGVFMSTAKCWTEEDLSIGPHEFCSQHTMQIVDENGKYYLPYPDPSRIISAGVFV 4907 Query 845 DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS 904 DDI KTD +++ER+VSLAIDAYPL+KHP EY VF+ L +++ L+ L +L+ +S Sbjct 4908 DDITKTDAVILLERYVSLAIDAYPLSKHPKPEYRKVFYALLDWVKHLNKTLNEGVLESFS 4967 Query 905 VMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 V L +++ S++W+ FY +MY TVLQ Sbjct 4968 VTLLDEHESKFWDESFYASMYEKSTVLQ 4995 >sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavirus NL63 OX=277944 GN=rep PE=1 SV=1 Length=6729 Score = 1151 bits (2977), Expect = 0.0, Method: Compositional matrix adjust. Identities = 549/929 (59%), Positives = 694/929 (75%), Gaps = 8/929 (1%) Query 6 SFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNL 65 S+LNR G SAARL PC GT D RAFDIYN V+ K LK NC RF+ D L Sbjct 4048 SYLNRARGSSAARLEPC-NGTDIDKCVRAFDIYNKNVSFLGKCLKMNCVRFKNAD----L 4102 Query 66 IDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMV-PHISRQRLTKYTM 124 D YFV+KR T S +HE+++YNLL A+A+HDFF ++ DG ++ ++SR LTKYTM Sbjct 4103 KDGYFVIKRCTKSVMEHEQSMYNLLNFSGALAEHDFFTWK-DGRVIYGNVSRHNLTKYTM 4161 Query 125 ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ 184 DLVYA+R+FDE NCD LKE+LV CCD+ YF+ K WYD VEN DI RVYA+LG+ V + Sbjct 4162 MDLVYAMRNFDEQNCDVLKEVLVLTGCCDNSYFDSKGWYDPVENEDIHRVYASLGKIVAR 4221 Query 185 ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI 244 A+LK V CDAM G+VGVLTLDNQDLNGN+YDFGDF+ + P GVP SYYS +MPI Sbjct 4222 AMLKCVALCDAMVAKGVVGVLTLDNQDLNGNFYDFGDFVVSLPNMGVPCCTSYYSYMMPI 4281 Query 245 LTLTRALTAESHVDTDLTKPYIK-WDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLD 303 + LT L +E V +D+ K +DLLKYDFTE + LF++YFK+W YHPNC +C D Sbjct 4282 MGLTNCLASECFVKSDIFGSDFKTFDLLKYDFTEHKENLFNKYFKHWSFDYHPNCSDCYD 4341 Query 304 DRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHS 363 D C++HCANFN LF+T P T+FGPL RK+F+DGVP V + GYHF++LG+V N+DVN HS Sbjct 4342 DMCVIHCANFNTLFATTIPGTAFGPLCRKVFIDGVPLVTTAGYHFKQLGLVWNKDVNTHS 4401 Query 364 SRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFA 423 RL+ ELL + DP++ AS L+D+RT CFSVAAL+ + Q VKPG+FN++FY+F Sbjct 4402 VRLTITELLQFVTDPSLIIASSPALVDQRTICFSVAALSTGLTNQVVKPGHFNEEFYNFL 4461 Query 424 VSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCY 483 +GFF EGS + LKHFFFAQ+G+AA+ D+D+YRYN PT+ DI Q ++V +YFD Y Sbjct 4462 RLRGFFDEGSELTLKHFFFAQNGDAAVKDFDFYRYNKPTILDICQARVTYKIVSRYFDIY 4521 Query 484 DGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMN 543 +GGCI A +V+V NL+KSAG+P NK+GKA LYY+S+SYE+QDALFA TKRNV+PT+TQ+N Sbjct 4522 EGGCIKACEVVVTNLNKSAGWPLNKFGKASLYYESISYEEQDALFALTKRNVLPTMTQLN 4581 Query 544 LKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLK 603 LKYAIS K RARTV GVS+ STMT RQ+HQK LKSI TR ATVVIGT+KFYGGW+NML+ Sbjct 4582 LKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRNATVVIGTTKFYGGWNNMLR 4641 Query 604 TVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL 663 T+ VENP LMGWDYPKCDRA+PNM+R+++++VL KH CC+ + RFYRL NE AQVL Sbjct 4642 TLIDGVENPMLMGWDYPKCDRALPNMIRMISAMVLGSKHVNCCTATDRFYRLGNELAQVL 4701 Query 664 SEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNL 723 +E+V G Y KPGGT+SGDA+TAYANS+FNI QAV++N+N LLS + + VR+L Sbjct 4702 TEVVYSNGGFYFKPGGTTSGDASTAYANSIFNIFQAVSSNINRLLSVPSDSCNNVNVRDL 4761 Query 724 QHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFK 783 Q RLY+ YR V+ F++++Y YLRKHFSMMILSDD VVC+N YA G +A I FK Sbjct 4762 QRRLYDNCYRLTSVEESFIDDYYGYLRKHFSMMILSDDGVVCYNKDYAELGYIADISAFK 4821 Query 784 SVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCF 843 + LYYQNNVFMS +KCW E DLTKGPHEFCSQHTM + D YLPYPDPSRIL AG F Sbjct 4822 ATLYYQNNVFMSTSKCWVEEDLTKGPHEFCSQHTMQIVDKDGTYYLPYPDPSRILSAGVF 4881 Query 844 VDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMY 903 VDD+VKTD +++ER+VSLAIDAYPL+KHPN EY VF++ L +++ L+ L +L+ + Sbjct 4882 VDDVVKTDAVVLLERYVSLAIDAYPLSKHPNSEYRKVFYVLLDWVKHLNKNLNEGVLESF 4941 Query 904 SVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 SV L ++ ++W +FY +MY T+LQ Sbjct 4942 SVTLLDNQEDKFWCEDFYASMYENSTILQ 4970 >sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmissible gastroenteritis coronavirus (strain Purdue) OX=11151 GN=rep PE=1 SV=1 Length=6684 Score = 1142 bits (2953), Expect = 0.0, Method: Compositional matrix adjust. Identities = 552/929 (59%), Positives = 689/929 (74%), Gaps = 6/929 (1%) Query 5 QSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN 64 QS+LNRV G SAARL PC GT D V RAFDIYN VA KFLKTNC RF+ D+ D Sbjct 4004 QSYLNRVRGSSAARLEPC-NGTDPDHVSRAFDIYNKDVACIGKFLKTNCSRFRNLDKHD- 4061 Query 65 LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM 124 +Y++VKR T + HE+ YN LKD AVA+HDFF ++ +++R+ LTKYTM Sbjct 4062 ---AYYIVKRCTKTVMDHEQVCYNDLKDSGAVAEHDFFTYKEGRCEFGNVARRNLTKYTM 4118 Query 125 ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ 184 DL YA+R+FDE NC+ LKEILVT C +++F KDW+D VEN I VYA LG V Sbjct 4119 MDLCYAIRNFDEKNCEVLKEILVTVGACTEEFFENKDWFDPVENEAIHEVYAKLGPIVAN 4178 Query 185 ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI 244 A+LK V FCDA+ G +GV+TLDNQDLNGN+YDFGDF++T PG G V SYYS +MP+ Sbjct 4179 AMLKCVAFCDAIVEKGYIGVITLDNQDLNGNFYDFGDFVKTAPGFGCACVTSYYSYMMPL 4238 Query 245 LTLTRALTAESHVDTDL-TKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLD 303 + +T L +E+ V +D+ Y ++DLL YDFTE + LF +YFKYWD+TYHPNC +C Sbjct 4239 MGMTSCLESENFVKSDIYGSDYKQYDLLAYDFTEHKEYLFQKYFKYWDRTYHPNCSDCTS 4298 Query 304 DRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHS 363 D CI+HCANFN LFS P T+FGPLVRK+ +DGVP VV+ GYHF++LG+V N DV L + Sbjct 4299 DECIIHCANFNTLFSMTIPMTAFGPLVRKVHIDGVPVVVTAGYHFKQLGIVWNLDVKLDT 4358 Query 364 SRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFA 423 +LS +LL + DP + AS LLD+RT CFS+AAL+ + +QTVKPG+FNKDFYDF Sbjct 4359 MKLSMTDLLRFVTDPTLLVASSPALLDQRTVCFSIAALSTGITYQTVKPGHFNKDFYDFI 4418 Query 424 VSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCY 483 +GFF+EGS + LKHFFFAQ G AA++D++YYRYN T+ DI Q FV ++V KYF+CY Sbjct 4419 TERGFFEEGSELTLKHFFFAQGGEAAMTDFNYYRYNRVTVLDICQAQFVYKIVGKYFECY 4478 Query 484 DGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMN 543 DGGCINA +V+V N DKSAG+P NK+GKARLYY+++SYE+QDALFA TKRNV+PT+TQMN Sbjct 4479 DGGCINAREVVVTNYDKSAGYPLNKFGKARLYYETLSYEEQDALFALTKRNVLPTMTQMN 4538 Query 544 LKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLK 603 LKYAIS K RARTV GVS+ STMT RQ+HQK LKSIAATR ATVVIG++KFYGGW NMLK Sbjct 4539 LKYAISGKARARTVGGVSLLSTMTTRQYHQKHLKSIAATRNATVVIGSTKFYGGWDNMLK 4598 Query 604 TVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL 663 + DV+N LMGWDYPKCDRA+PNM+R+ ++++L KH CC+ + RFYRL+NE AQVL Sbjct 4599 NLMRDVDNGCLMGWDYPKCDRALPNMIRMASAMILGSKHVGCCTHNDRFYRLSNELAQVL 4658 Query 664 SEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNL 723 +E+V C G Y KPGGT+SGD TTAYANS FNI QAV+ANVN LL D N + V+++ Sbjct 4659 TEVVHCTGGFYFKPGGTTSGDGTTAYANSAFNIFQAVSANVNKLLGVDSNACNNVTVKSI 4718 Query 724 QHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFK 783 Q ++Y+ YR+ +D +FV E+++YLRKHFSMMILSDD VVC+N YA G VA I FK Sbjct 4719 QRKIYDNCYRSSSIDEEFVVEYFSYLRKHFSMMILSDDGVVCYNKDYADLGYVADINAFK 4778 Query 784 SVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCF 843 + LYYQNNVFMS +KCW E DL+ GPHEFCSQHT+ + D YLPYPDPSRIL AG F Sbjct 4779 ATLYYQNNVFMSTSKCWVEPDLSVGPHEFCSQHTLQIVGPDGDYYLPYPDPSRILSAGVF 4838 Query 844 VDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMY 903 VDDIVKTD +M+ER+VSLAIDAYPLTKHP Y VF+ L +++ L L +LD + Sbjct 4839 VDDIVKTDNVIMLERYVSLAIDAYPLTKHPKPAYQKVFYTLLDWVKHLQKNLNAGVLDSF 4898 Query 904 SVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 SV + + ++W EFY ++Y TVLQ Sbjct 4899 SVTMLEEGQDKFWSEEFYASLYEKSTVLQ 4927 >sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavirus (strain FIPV WSU-79/1146) OX=33734 GN=rep PE=1 SV=2 Length=6709 Score = 1128 bits (2917), Expect = 0.0, Method: Compositional matrix adjust. Identities = 550/930 (59%), Positives = 686/930 (74%), Gaps = 8/930 (1%) Query 5 QSFLNRVCGVSAAR-LTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDD 63 QS+LN CGV L PC GT D V RAFDIYN VA KFLKTNC RF+ D+ D Sbjct 4029 QSYLNE-CGVLVQLDLEPC-NGTDPDHVSRAFDIYNKDVACIGKFLKTNCSRFRNLDKHD 4086 Query 64 NLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYT 123 +Y+VVKR T S HE+ YN LKD VA+HDFF ++ +++R+ LTKYT Sbjct 4087 ----AYYVVKRCTKSVMDHEQVCYNDLKDSGVVAEHDFFLYKEGRCEFGNVARKDLTKYT 4142 Query 124 MADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVR 183 M DL YA+R+FDE NC+ LKEILVT C++ +F KDW+D VEN I VYA LG V Sbjct 4143 MMDLCYAIRNFDEKNCEVLKEILVTLGACNESFFENKDWFDPVENEAIHEVYARLGPIVA 4202 Query 184 QALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMP 243 A+LK V FCDA+ G +G++TLDNQDLNGN+YDFGDF++TTPG G V SYYS +MP Sbjct 4203 NAMLKCVAFCDAIVEKGYIGIITLDNQDLNGNFYDFGDFVKTTPGFGCACVTSYYSYMMP 4262 Query 244 ILTLTRALTAESHVDTDL-TKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCL 302 ++ +T L +E+ V +D+ Y ++DLL YDFT+ + KLF +YFK+WD+TYHPNC +C Sbjct 4263 LMGMTSCLESENFVKSDIYGADYKQYDLLAYDFTDHKEKLFHKYFKHWDRTYHPNCSDCT 4322 Query 303 DDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLH 362 D CI+HCANFN LFS P T+FGPLVRK+ +DGVP VV+ GYHF++LG+V N DV L Sbjct 4323 SDECIIHCANFNTLFSMTIPSTAFGPLVRKVHIDGVPVVVTAGYHFKQLGIVWNLDVKLD 4382 Query 363 SSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDF 422 + +LS +LL + DP + AS LLD+RT CFS+AAL+ V +QTVKPG+FNKDFYDF Sbjct 4383 TMKLSMTDLLRFVTDPTLLVASSPALLDQRTVCFSIAALSTGVTYQTVKPGHFNKDFYDF 4442 Query 423 AVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDC 482 +GFF+EGS + LKHFFFAQ G AA++D++YYRYN T+ DI Q FV ++V KYF+C Sbjct 4443 ITERGFFEEGSELTLKHFFFAQGGEAAMTDFNYYRYNRVTVLDICQAQFVYKIVGKYFEC 4502 Query 483 YDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQM 542 YDGGCINA +V+V N DKSAG+P NK+GKARLYY+++SYE+QDALFA TKRNV+PT+TQM Sbjct 4503 YDGGCINAREVVVTNYDKSAGYPLNKFGKARLYYETLSYEEQDALFALTKRNVLPTMTQM 4562 Query 543 NLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML 602 NLKYAIS K RARTV GVS+ STMT RQ+HQK LKSIAATR ATVVIG++KFYGGW NML Sbjct 4563 NLKYAISGKARARTVGGVSLLSTMTTRQYHQKHLKSIAATRNATVVIGSTKFYGGWDNML 4622 Query 603 KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQV 662 K + DV+N LMGWDYPKCDRA+PNM+R+ ++++L KH CC+ S RFYRL+NE AQV Sbjct 4623 KNLMRDVDNGCLMGWDYPKCDRALPNMIRMASAMILGSKHVGCCTHSDRFYRLSNELAQV 4682 Query 663 LSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRN 722 L+E+V C G Y KPGGT+SGD TTAYANS FNI QAV+ANVN LL D N + V++ Sbjct 4683 LTEVVHCTGGFYFKPGGTTSGDGTTAYANSAFNIFQAVSANVNKLLGVDSNACNNVTVKS 4742 Query 723 LQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNF 782 +Q ++Y+ YR+ +D +FV E+++YLRKHFSMMILSDD VVC+N YA G VA I F Sbjct 4743 IQRKIYDNCYRSSSIDEEFVVEYFSYLRKHFSMMILSDDGVVCYNKDYADLGYVADINAF 4802 Query 783 KSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGC 842 K+ LYYQNNVFMS +KCW E DL+ GPHEFCSQHT+ + D YLPYPDPSRIL AG Sbjct 4803 KATLYYQNNVFMSTSKCWVEPDLSVGPHEFCSQHTLQIVGPDGDYYLPYPDPSRILSAGV 4862 Query 843 FVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDM 902 FVDDIVKTD +M+ER+VSLAIDAYPLTKHP Y VF+ L +++ L L +LD Sbjct 4863 FVDDIVKTDNVIMLERYVSLAIDAYPLTKHPKPAYQKVFYTLLDWVKHLQKNLNAGVLDS 4922 Query 903 YSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 +SV + + ++W EFY ++Y TVLQ Sbjct 4923 FSVTMLEEGQDKFWSEEFYASLYEKSTVLQ 4952 >sp|Q9WQ77|R1AB_CVRSD Replicase polyprotein 1ab (Fragment) OS=Rat coronavirus (strain 681) OX=33740 GN=rep PE=3 SV=1 Length=307 Score = 483 bits (1242), Expect = 2e-163, Method: Compositional matrix adjust. Identities = 225/307 (73%), Positives = 266/307 (87%), Gaps = 0/307 (0%) Query 506 FNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICST 565 FNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+TQMNLKYAISAKNRARTVAGVSI ST Sbjct 1 FNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNLKYAISAKNRARTVAGVSILST 60 Query 566 MTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRA 625 MT R FHQK LKSIAATRG VVIGT+KFYGGW +ML+ + DV++P LMGWDYPKCDRA Sbjct 61 MTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRRLIKDVDSPVLMGWDYPKCDRA 120 Query 626 MPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDA 685 MPN+LRI++SLVLARKH +CCS + RFYRLANECAQVLSE+VMCGG YVKPGGTSSGDA Sbjct 121 MPNILRIVSSLVLARKHDSCCSHTDRFYRLANECAQVLSEIVMCGGCYYVKPGGTSSGDA 180 Query 686 TTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEF 745 TTA+ANSVFNICQAV+ANV +L++ +G+KI D +R LQ RLY +YR VD FV+E+ Sbjct 181 TTAFANSVFNICQAVSANVCSLMACNGHKIEDLSIRELQKRLYSNVYRADHVDPAFVSEY 240 Query 746 YAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDL 805 Y +L KHFSMMILSDD VVC+NS +AS+G +A+I F+ VLYYQNNVFMSEAKCW ETD+ Sbjct 241 YEFLNKHFSMMILSDDGVVCYNSEFASKGYIANISAFQQVLYYQNNVFMSEAKCWVETDI 300 Query 806 TKGPHEF 812 KGPHEF Sbjct 301 EKGPHEF 307 >sp|Q9WQ76|R1AB_CVTMI Replicase polyprotein 1ab (Fragment) OS=Turkey coronavirus (strain Minnesota) OX=231430 GN=rep PE=3 SV=1 Length=306 Score = 444 bits (1142), Expect = 2e-148, Method: Compositional matrix adjust. Identities = 213/307 (69%), Positives = 248/307 (81%), Gaps = 1/307 (0%) Query 506 FNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICST 565 FNK+GKARLYY+ MS E+QD LF TK+NV+PTITQMNLKYAISAKNRARTVAGVSI ST Sbjct 1 FNKFGKARLYYE-MSLEEQDQLFESTKKNVLPTITQMNLKYAISAKNRARTVAGVSILST 59 Query 566 MTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRA 625 MTNRQFHQK+LKSI TR A VVIGT+KFYGGW NML+ + VE+P LMGWDYPKCDRA Sbjct 60 MTNRQFHQKILKSIVNTRNAPVVIGTTKFYGGWDNMLRNLIQGVEDPILMGWDYPKCDRA 119 Query 626 MPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDA 685 MPN+LRI ASLVLARKHT CC+ S R YRL NECAQVLSE V+ G +YVKPGGTSSGDA Sbjct 120 MPNLLRITASLVLARKHTNCCTWSERIYRLYNECAQVLSETVLATGGIYVKPGGTSSGDA 179 Query 686 TTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEF 745 TTAYANSVFNI QA +ANV LLS I +++LQ+ LY+ +YR + D FV +F Sbjct 180 TTAYANSVFNIIQATSANVARLLSVITRDIVYDDIKSLQYELYQQVYRRVNFDPAFVEKF 239 Query 746 YAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDL 805 Y+YL K+FS+MI +DD VVC+N+T A QGLVA I F+ +LYYQNNV+M+++KCW E DL Sbjct 240 YSYLCKNFSLMIFADDGVVCYNNTLAKQGLVADISGFREILYYQNNVYMADSKCWVEPDL 299 Query 806 TKGPHEF 812 KGPHEF Sbjct 300 EKGPHEF 306 >sp|P0C6V7|R1AB_BEV Replicase polyprotein 1ab OS=Berne virus OX=11156 GN=rep PE=1 SV=1 Length=6857 Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 121/489 (25%), Positives = 219/489 (45%), Gaps = 46/489 (9%) Query 419 FYDFAVSKGFFKEGSSV--ELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVV 476 FYD + + G K+F++ + A++D YY Y + L V + + Sbjct 4909 FYDVGLCQELTDAGVDCGEAFKYFYYLSNPAGALADVCYYDYQGTGFYSPKLLAGVYDFM 4968 Query 477 DKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWG-KARLYYDSMSYEDQDALFAYTKRNV 535 + +CY IN + + N G + Y ++ E+ LF Y ++ Sbjct 4969 KRVTECYR---INERFTYEQAKPRKSSMGINITGYQQDAVYRALGPENIARLFEYAQKAP 5025 Query 536 IPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKL---LKSIAATRGATVVIGTS 592 +P T++ K+A+SAK RARTV+ S ++ R H+ + + +A G +IG S Sbjct 5026 LPFCTKIITKFALSAKARARTVSSCSFIASTIFRFAHKPVTSKMVEVAQNSGGFCLIGVS 5085 Query 593 KFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRF 652 K+ + LK Y +E + G DY KCDR P R + + +L + Sbjct 5086 KYGLKFSKFLKDKYGAIEGFDVFGSDYTKCDRTFPLSFRALTAALLYE----LGEWDEKS 5141 Query 653 YRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLS--T 710 + NE + + ++C G L KPGGTSSGDATTA++N+ +N +LS + Sbjct 5142 WLYLNEVNSYMLDTMLCDGMLLNKPGGTSSGDATTAHSNTFYNYMVHYVVAFKTILSDLS 5201 Query 711 DGNKIADKYVRNL----QHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCF 766 +GNK+ N ++++ L ++ F+N LSDD+ + F Sbjct 5202 EGNKVMRIAAHNAYTTGDYQVFNTLLEDQFQTNYFLN-------------FLSDDSFI-F 5247 Query 767 NSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGP-HEFCSQHTMLVKQGDD 825 + A + + + +NF + L + + + K W+ TKG EFCS H ++K + Sbjct 5248 SKPEALK--IFTCENFSNKLQTILHTKVDQTKSWS----TKGHIEEFCSAH--IIKTDGE 5299 Query 826 YVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYL 885 Y +L P R+L + +D + D M RFV++ ++ +++ + + +F ++L Sbjct 5300 YHFL--PSRGRLLASLLILDKLSDVDIYYM--RFVAILCESAVYSRYQPEFFNGLFQVFL 5355 Query 886 QYIRKLHDE 894 +++ + Sbjct 5356 DKVQQFRKD 5364 Score = 42.4 bits (98), Expect = 0.025, Method: Compositional matrix adjust. Identities = 43/156 (28%), Positives = 68/156 (44%), Gaps = 32/156 (21%) Query 79 NYQHEETIYNLLKDCP--AVAKHDFFKFRIDGDMVPH----------ISRQRLTKYTMAD 126 YQ + + +KD A+AK F ++PH + R +++++ D Sbjct 4618 EYQSKRFMIKRVKDQSEFALAKTAFLP-----SIIPHHMEKQNGEWFLIRGPTSQWSLGD 4672 Query 127 LVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQAL 186 LVYA+ D+ D L E +N D++ + + F+ ANL E A+ Sbjct 4673 LVYAIWLGDQ---DYLSECGFVFNPSRDEFLDDANQRSFL---------ANLLE---PAI 4717 Query 187 LKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDF 222 L ++ + LTLDN DLNG YDFGD+ Sbjct 4718 LNFSHIYWQVKMCKVPYKLTLDNVDLNGQLYDFGDY 4753 >sp|P0C6V8|R1AB_BRV1 Replicase polyprotein 1ab OS=Breda virus 1 OX=360393 GN=rep PE=2 SV=1 Length=6733 Score = 117 bits (292), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 114/468 (24%), Positives = 204/468 (44%), Gaps = 42/468 (9%) Query 437 LKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVN 496 K+F++ + A++D +Y Y + L V + + + CY + Sbjct 4805 FKYFYYLSNPAGALADVCFYDYQGTGFYSPKLLAGVYDFMKRVTTCYK---TDERFTYEQ 4861 Query 497 NLDKSAGFPFNKWG-KARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRAR 555 + + N G + Y ++ E+ LF Y ++ +P T++ K+A+SAK RAR Sbjct 4862 AKPRKSSMGINITGYQQDAVYRALGPENITKLFEYAQKAPLPFCTKIITKFALSAKARAR 4921 Query 556 TVAGVSICSTMTNRQFHQKL---LKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENP 612 TV+ S ++ R H+ + + +A +IG SK+ + LK Y +E Sbjct 4922 TVSSCSFIASTIFRFAHKPVTSKMVEVAQNSQGFCLIGVSKYGLKFSKFLKDKYGAIEQF 4981 Query 613 HLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGS 672 + G DY KCDR P R + + +L + NE + + ++C G Sbjct 4982 DVFGSDYTKCDRTFPLSFRALTAALLYELG----GWEEDSWLYLNEVNSYMLDTMLCDGM 5037 Query 673 LYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLS--TDGNKIADKYVRNLQHRLYEC 730 L KPGGTSSGDATTA++N+ +N +LS +D NK+ +R H Y Sbjct 5038 LLNKPGGTSSGDATTAHSNTFYNYMVHYVVAFKTILSDLSDCNKV----MRIAAHNAYT- 5092 Query 731 LYRNRDVDTDFVNEFYAYLRKHFS----MMILSDDAVVCFNSTYASQGLVASIKNFKSVL 786 T F L + F + LSDD+ + F+ A + + + +NF + L Sbjct 5093 --------TGDYGVFNTLLEEQFQTNYFLNFLSDDSFI-FSKPGALK--IFTCENFSNKL 5141 Query 787 YYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDD 846 + + K W T + EFCS H ++K +Y +L P R+L + +D Sbjct 5142 QTILHTKVDLTKSWATTGHIE---EFCSAH--IIKTDGEYHFL--PSRGRLLASLLILDK 5194 Query 847 IVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDE 894 + D M RFV++ ++ +++ + + +F ++L +++ + Sbjct 5195 LSDVDIYYM--RFVAILCESAVYSRYQPEFFNGLFQVFLDKVQQFRKD 5240 Score = 41.2 bits (95), Expect = 0.068, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 20/133 (15%) Query 95 AVAKHDFFKFRIDGDMVPH-----ISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTY 149 A+A+ F I MV + R T++++ DLVYA+ D+ D E + Sbjct 4512 ALARTAFLPSIIPHHMVHQNGEWFLVRGPTTQWSLGDLVYAIWLGDQAYLD---ECGFVF 4568 Query 150 NCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDN 209 N D++ + + ++ ANL E A+L + ++ + +TLDN Sbjct 4569 NPSRDEFLDDANQRSYL---------ANLLE---PAILSFCEIFHCVKGCQVPYKITLDN 4616 Query 210 QDLNGNWYDFGDF 222 DL G YDFGD+ Sbjct 4617 LDLKGQLYDFGDY 4629 >sp|F8RL29|R1AB_AMV79 Replicase polyprotein 1ab OS=Alphamesonivirus 1 (isolate Aedes harrisoni/Cote d'Ivoire/C79/2004) OX=1552985 GN=pp1ab PE=1 SV=1 Length=5088 Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 115/449 (26%), Positives = 190/449 (42%), Gaps = 68/449 (15%) Query 491 NQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISA 550 ++V V N KSAG P+ K+G + + + +DA+ + + + +T K A S Sbjct 3101 SEVPVRNKHKSAGTPYRKFGDSE-FMRELYGNYRDAIVYHKRHSADQQLTLTINKVAPSK 3159 Query 551 KNRARTVAGVSICSTMTNRQFHQKLLKSIAATR--GATVVIGTSKFYGGWHNMLKTVYSD 608 +R RT+ +SI + R ++ L I T G ++IG + YGGW + K +Y + Sbjct 3160 NHRDRTILAISINKSEPGRSLYRWNLDKIKYTSSLGGPILIGFTAQYGGWDKLYKYLYKN 3219 Query 609 VENPH--------LMGWDYPKCDRAMPNMLRIMASLVL-------ARKHTTCCSLSHRFY 653 H L G DYPK DR + NML++ + VL + + + ++ Sbjct 3220 SPADHPDIAEHAVLGGKDYPKWDRRISNMLQLTTTTVLYSLIDPNTQSKLNNATPAQTWH 3279 Query 654 RLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFN-----------ICQAVTA 702 E QVL + ++ G LY KPGG +SG++ TA NS+ + + Q+ Sbjct 3280 EYMAETTQVLFDYLVFGNELYQKPGGVTSGNSRTADGNSLLHLLIDFYAIISQLIQSTPE 3339 Query 703 NV-------NALLSTDGNKIADKYVRNLQHRLYECL-YRNRDVDTDFVNEFYAYLRKHFS 754 NV NAL T KI Y+ + C+ RN D+ + R+ Sbjct 3340 NVHLEVNLRNALCKTVFTKIPSDYIDS------SCVTLRNTDI-------LHTIRRRVAK 3386 Query 755 MMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETD-LTKGPHEFC 813 LSDD ++ + + +F SV + ++ +++ K D + + EF Sbjct 3387 GAYLSDDGLIVIDPR------IIRYDDFMSVSHLISHYMIAQNKHKYHIDAIQRYAREFL 3440 Query 814 SQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAY------ 867 SQ T +K G D VY P P+ R+ A D+ D + I R ++L Y Sbjct 3441 SQDT--IKFG-DMVY-PIPEFGRMYTAMLLSDNKNTLDPQINITRLLALFSYLYIYYFKY 3496 Query 868 -PLTKHPNQEYADVFHLYLQYIRKLHDEL 895 HP ++ D Y++ DE+ Sbjct 3497 VDQPTHPILKFLDALRTYIELKLNTTDEI 3525 >sp|Q008X6|R1AB_WBV24 Replicase polyprotein 1ab OS=White bream virus (isolate Blicca bjoerkna L./Germany/DF24/00) OX=766180 GN=rep PE=1 SV=1 Length=6872 Score = 100 bits (248), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 113/448 (25%), Positives = 188/448 (42%), Gaps = 56/448 (13%) Query 415 FNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNA--AISDYDYYRYNLPTMCDIRQLLFV 472 + + FYD + + G ++ + Q G A+ D+ YY YN P D L V Sbjct 4888 YKRPFYDLDLIQRMNSAGLNLSETTGYHYQCGTTTEAVEDFMYYNYNSPKSFDPSYLKSV 4947 Query 473 VEVV-DKYFDCYDGGCINANQVIVNNLDKSAGFP-FNKWGKA------RLYYDSMSYEDQ 524 + DK+ I+ ++ L+ +G P + G + ++++ + Sbjct 4948 YTYMRDKFMKI-----ISTDE----KLNHQSGAPRMSSMGVGVSGFFQKTVWNALPEDFS 4998 Query 525 DALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRG 584 L + V+P T + K+ K R RT+ G S ++ R H+ + + T Sbjct 4999 PRLLDTASKTVMPFSTNIVKKFQRQKKTRVRTLGGSSFITSSIFRMLHKPVTNKMVQTAQ 5058 Query 585 ATV---VIGTSKFYGGWHNMLKTVYSD-VENPHLMGWDYPKCDRAMPNMLRIM-ASLVLA 639 A + +IG SKF G+H L + + +E+ +MG DY KCDR+ P + R + A+L Sbjct 5059 ANIGPFLIGISKFNLGFHKYLSAHHPNGIEDCQVMGADYTKCDRSFPVVCRALSAALFYE 5118 Query 640 RKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQA 699 H L + NE L + G ++ KPGGT+SGD+TTA++NS +N Sbjct 5119 LGH-----LEPNNHWFLNEMFAFLLDPSFISGHIFNKPGGTTSGDSTTAFSNSFYNYFVH 5173 Query 700 VTANVNALLSTDGNKIADKYVRNLQHRLYEC-------LYRNRDVDTDFVNEFYAYLRKH 752 + L+T+ + + + NL H+ + LY + D + F H Sbjct 5174 LYIQYLTFLTTEMPP-SYQPLCNLAHQAFSTGNTETYDLYFSMADDLNSTEYFL-----H 5227 Query 753 FSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEF 812 F LSDD+ + T + + NF L ++ AK W+ HEF Sbjct 5228 F----LSDDSFIISKPTAFP---IFTPANFSMKLQNVLGCYVDPAKSWSADGEI---HEF 5277 Query 813 CSQHTMLVKQGDDYVYLPYPDPSRILGA 840 CS H + + YV PDP+ +L Sbjct 5278 CSSHICKINEKYQYV----PDPNNMLAG 5301 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 76/191 (40%), Gaps = 35/191 (18%) Query 35 FDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIY---NLLK 91 +I N+ VA K K N ++ L D+ HE IY LL Sbjct 4581 INILNNNVASLRKVFKKNTASIPSENGTIMLKDT----------GTAHE--IYVAKQLLA 4628 Query 92 DCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNC 151 V +H R + D ++ R T Y++ DLVYA D K +L+ + Sbjct 4629 KGLPVLQHA----RFNHDGTDYLIRYYTTPYSLGDLVYAYMVGD------FKHMLLALDI 4678 Query 152 CDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQD 211 D+ + ++ Y N E++R L + + + A + +TLDN D Sbjct 4679 TDETCLDPGNYSS----------YYNFKEQLRNKLASVIPNVNKILAAELPLAITLDNID 4728 Query 212 LNGNWYDFGDF 222 LNG YDFGD+ Sbjct 4729 LNGFLYDFGDY 4739 >sp|Q68772|RPOA_SHFV Replicase polyprotein 1ab OS=Simian hemorrhagic fever virus OX=38143 GN=rep PE=2 SV=4 Length=3595 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 68/286 (24%), Positives = 119/286 (42%), Gaps = 33/286 (12%) Query 441 FFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVI-----V 495 ++ Q G A + D ++NL T I L V+ +V Y G I I V Sbjct 2333 YYTQHGCEAAALQDLKKFNLSTQGFI--LPEVLNIVRNYLL----GTIGYRPAIYKPSTV 2386 Query 496 NNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRAR 555 + D AG + L + D D L V T+T + LK +K + R Sbjct 2387 PSNDSHAGINGLSFSTKTL----QALPDIDELCEKAIAEVWQTVTPVTLKKQFCSKAKTR 2442 Query 556 TVAGVSICSTMTNRQFHQKLLKSIA-ATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHL 614 T+ G + +++ R + + A + + + +G SKF +V+ Sbjct 2443 TILGTNAMASLALRALLSGVTQGFQLAGKNSPICLGKSKF--------DPCTFEVKG-RC 2493 Query 615 MGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLY 674 + D CDR+ P ++R A+ +L C + Y + N C ++++ S Sbjct 2494 LETDLASCDRSTPAIVRHFATKLLF--EMACAERALPLY-VVNCC----HDLIVTQTSAA 2546 Query 675 VKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 K GG SSGD T+ AN+++++ V V LL +G+ ++ K++ Sbjct 2547 TKRGGLSSGDPVTSIANTIYSLVLYVQHMVLTLLE-NGHPLSLKFL 2591 >sp|Q9WJB2|RPOA_PRRSR Replicase polyprotein 1ab OS=Porcine reproductive and respiratory syndrome virus (strain VR-2332) OX=300559 GN=rep PE=1 SV=2 Length=3960 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 59/248 (24%), Positives = 105/248 (42%), Gaps = 30/248 (12%) Query 454 DYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKS-AGFPFNKWGKA 512 D +Y+L T + L V+ +V KY + G C ++ S AG N++ Sbjct 2744 DLSKYDLSTQGFV--LPGVLRLVRKYLFAHVGKCPPVHRPSTYPAKNSMAGINGNRFPTK 2801 Query 513 RLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFH 572 D S + D L A R T+T LK K + RT+ G + + +R Sbjct 2802 ----DIQSVPEIDVLCAQAVRENWQTVTPCTLKKQYCGKKKTRTILGTNNFIALAHRAVL 2857 Query 573 QKLLKS-IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHL---MGWDYPKCDRAMPN 628 + + + + + +G +KF +++ P L + D CDR+ P Sbjct 2858 SGVTQGFMKKAFNSPIALGKNKF------------KELQTPVLGRCLEADLASCDRSTPA 2905 Query 629 MLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTA 688 ++R A+ +L + C+ H + N C +L V G++ K GG SSGD T+ Sbjct 2906 IVRWFAANLL---YELACAEEHLPSYVLNCCHDLL---VTQSGAV-TKRGGLSSGDPITS 2958 Query 689 YANSVFNI 696 +N+++++ Sbjct 2959 VSNTIYSL 2966 >sp|A6YQT5|RPOA_PRRSV Replicase polyprotein 1ab OS=Porcine reproductive and respiratory syndrome virus OX=28344 PE=1 SV=2 Length=3931 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 62/247 (25%), Positives = 104/247 (42%), Gaps = 28/247 (11%) Query 454 DYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKS-AGFPFNKWGKA 512 D +Y+L T + L V+ +V KY + G C ++ S AG N++ Sbjct 2715 DLSKYDLSTQGFV--LPGVLRLVRKYLFAHVGKCPPVHRPSTYPAKNSMAGINGNRFPTK 2772 Query 513 RLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFH 572 D S + D L A R T+T LK K + RT+ G + + +R Sbjct 2773 ----DIQSVPEIDVLCAQAVRENWQTVTPCTLKKQYCGKKKTRTILGTNNFIALAHR--- 2825 Query 573 QKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHL---MGWDYPKCDRAMPNM 629 AA G T K + + K + +++ P L + D CDR+ P + Sbjct 2826 -------AALSGVTQGF-MKKAFNSPIALGKNKFKELQAPVLGRCLEADLASCDRSTPAI 2877 Query 630 LRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAY 689 +R A+ +L + C+ H + N C +L V G++ K GG SSGD T+ Sbjct 2878 VRWFAANLL---YELACAEEHLPSYVLNCCHDLL---VTQSGAV-TKRGGLSSGDPITSV 2930 Query 690 ANSVFNI 696 +N+++++ Sbjct 2931 SNTIYSL 2937 >sp|Q8B912|RPOA_PRRSB Replicase polyprotein 1ab OS=Porcine reproductive and respiratory syndrome virus (strain HB-1) OX=300563 GN=rep PE=2 SV=3 Length=3961 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 62/247 (25%), Positives = 104/247 (42%), Gaps = 28/247 (11%) Query 454 DYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKS-AGFPFNKWGKA 512 D +Y+L T + L V+ +V KY + G C ++ S AG N++ Sbjct 2745 DLSKYDLVTQGFV--LPGVLRLVRKYLFAHVGKCPPVHRPSTYPAKNSMAGINGNRFPTK 2802 Query 513 RLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFH 572 D S + D L A R T+T LK K + RT+ G + + +R Sbjct 2803 ----DIQSVPEIDVLCAQAVRENWQTVTPCTLKKQYCGKKKTRTILGTNNFIALAHR--- 2855 Query 573 QKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHL---MGWDYPKCDRAMPNM 629 AA G T K + + K + +++ P L + D CDR+ P + Sbjct 2856 -------AALSGVTQGF-MKKAFNSPIALGKNKFKELQTPVLGRCLEADLASCDRSTPAI 2907 Query 630 LRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAY 689 +R A+ +L + C+ H + N C +L V G++ K GG SSGD T+ Sbjct 2908 VRWFAANLL---YELACAEEHLPSYVLNCCHDLL---VTQSGAV-TKRGGLSSGDPITSV 2960 Query 690 ANSVFNI 696 +N+++++ Sbjct 2961 SNTIYSL 2967 >sp|Q9YN02|RPOA_PRRS1 Replicase polyprotein 1ab OS=Porcine reproductive and respiratory syndrome virus (strain 16244B) OX=300561 GN=rep PE=1 SV=3 Length=3961 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 60/245 (24%), Positives = 104/245 (42%), Gaps = 24/245 (10%) Query 454 DYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKS-AGFPFNKWGKA 512 D +Y+L T + L V+ +V KY + G C ++ S AG N++ Sbjct 2745 DLSKYDLSTQGFV--LPGVLRLVRKYLFAHVGKCPPVHRPSTYPAKNSMAGINGNRFPTK 2802 Query 513 RLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFH 572 D S + D L A R T+T LK K + RT+ G + + +R Sbjct 2803 ----DIQSVPEIDVLCAQAVRENWQTVTPCTLKKQYCGKKKTRTILGTNNFIALAHRAAL 2858 Query 573 QKLLKS-IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLR 631 + + + + + +G +KF K + + V L D CDR+ P ++R Sbjct 2859 SGVTQGFMKKAFNSPIALGKNKF--------KELQTSVLGRCLEA-DLASCDRSTPAIVR 2909 Query 632 IMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYAN 691 A+ +L + C+ H + N C +L V G++ K GG SSGD T+ +N Sbjct 2910 WFAANLL---YELACAEEHLPSYVLNCCHDLL---VTQSGAV-TKRGGLSSGDPITSVSN 2962 Query 692 SVFNI 696 +++++ Sbjct 2963 TIYSL 2967 >sp|P18479|POLG_ZYMVC Genome polyprotein OS=Zucchini yellow mosaic virus (strain California) OX=117128 PE=1 SV=2 Length=3080 Score = 38.9 bits (89), Expect = 0.30, Method: Compositional matrix adjust. Identities = 57/270 (21%), Positives = 111/270 (41%), Gaps = 48/270 (18%) Query 454 DYYRYNLPT---MCDIRQLLFVVEVVDKY---FDCYDGGCINANQVIVNNLDKSAGFPFN 507 D+++YN P D + L V+ V + F+ + I + I N+L+ A Sbjct 2356 DFFKYNKPVTVNQLDHDKFLGAVDGVIRMMCDFEFNECRFITDPEEIYNSLNMKAAIGAQ 2415 Query 508 KWGKARLYYDSMS-YEDQDALFAYTKR--NVIPTITQMNLKYAISAKNRAR--------- 555 GK + Y++ + ++ + LF +R N + +LK + + R Sbjct 2416 YRGKKKEYFEGLDDFDRERLLFQSCERLFNGYKGLWNGSLKAELRPLEKVRANKTRTFTA 2475 Query 556 ----TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVEN 611 T+ G +C N +F++K LK +G +KFYGGW +++++ Sbjct 2476 APIDTLLGAKVCVDDFNNEFYRKNLK-------CPWTVGMTKFYGGWDKLMRSLPD---- 2524 Query 612 PHLMGWDYPKCDRAM------PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL-S 664 GW Y D + P +L A L++ + + L N A+++ + Sbjct 2525 ----GWLYCHADGSQFDSSLTPALLN--AVLIIRSFYMEDWWVGQEM--LENLYAEIVYT 2576 Query 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVF 694 ++ G+++ K G +SG +T N++ Sbjct 2577 PILAPDGTIFKKFRGNNSGQPSTVVDNTLM 2606 >sp|Q04561|RPOA_PRRSL Replicase polyprotein 1ab OS=Porcine reproductive and respiratory syndrome virus (strain Lelystad) OX=11049 GN=rep PE=1 SV=3 Length=3855 Score = 38.5 bits (88), Expect = 0.40, Method: Compositional matrix adjust. Identities = 54/259 (21%), Positives = 98/259 (38%), Gaps = 58/259 (22%) Query 517 DSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLL 576 D S + D + A + T+T LK +K + RT+ G + + +R + Sbjct 2696 DVQSIPEIDEMCARAVKENWQTVTPCTLKKQYCSKPKTRTILGTNNFIALAHRSALSGVT 2755 Query 577 KS-IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMAS 635 ++ + + + +G +KF K ++ V L D CDR+ P ++R + Sbjct 2756 QAFMKKAWKSPIALGKNKF--------KELHCTVAGRCLEA-DLASCDRSTPAIVRWFVA 2806 Query 636 LVLARKHTTCCSLSHRFYRLANECAQVLS--------EMVMCGGSLYVKPGGTSSGDATT 687 +L Y LA C + L ++V + K GG SSGD T Sbjct 2807 NLL--------------YELAG-CEEYLPSYVLNCCHDLVATQDGAFTKRGGLSSGDPVT 2851 Query 688 AYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYA 747 + +N+V+++ V QH + L ++ F+ E Sbjct 2852 SVSNTVYSL-----------------------VIYAQHMVLSALKMGHEIGLKFLEEQLK 2888 Query 748 Y--LRKHFSMMILSDDAVV 764 + L + M++ SDD V+ Sbjct 2889 FEDLLEIQPMLVYSDDLVL 2907 >sp|Q06502|RPOA_LDVC Replicase polyprotein 1ab OS=Lactate dehydrogenase elevating virus (strain C) OX=300015 GN=rep PE=3 SV=2 Length=3637 Score = 38.1 bits (87), Expect = 0.48, Method: Compositional matrix adjust. Identities = 45/181 (25%), Positives = 74/181 (41%), Gaps = 23/181 (13%) Query 520 SYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKS- 578 S+ D DAL + T+T LK +K + RT+ G + + R + + Sbjct 2527 SHPDIDALCERACKEHWQTVTPCTLKKQYCSKAKTRTILGTNNFVALGLRSALSGVTQGF 2586 Query 579 IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMAS--- 635 + G+ + +G +KF L T S + D CDR+ P ++R + Sbjct 2587 MRKGIGSPICLGKNKF-----TPLPTKVSG----RCLEADLASCDRSTPAIIRWFTTNLL 2637 Query 636 LVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFN 695 LA S + N C +S M C + K GG SSGD T+ +N+V++ Sbjct 2638 FELAGPEEWIPSY------VLNCCHDAVSTMSGC----FDKRGGLSSGDPVTSVSNTVYS 2687 Query 696 I 696 + Sbjct 2688 L 2688 >sp|C4LCH1|UXUA_TOLAT Mannonate dehydratase OS=Tolumonas auensis (strain DSM 9187 / NBRC 110442 / TA 4) OX=595494 GN=uxuA PE=3 SV=1 Length=393 Score = 37.4 bits (85), Expect = 0.57, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 49/103 (48%), Gaps = 10/103 (10%) Query 502 AGFPFNKWG------KARLY-YDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRA 554 AG P + G +ARL YD + FA+ +N+IP Q+ L+ A+ + Sbjct 179 AGLPGAEEGYTIEQFRARLADYDGIDKAKLREHFAFFLKNIIPVAEQVGLRMAVHPDDPP 238 Query 555 RTVAGVS-ICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYG 596 R + G+ I ST+ + Q+ + + SIA G T+ G+ G Sbjct 239 RPILGLPRIVSTIEDMQWMVETVDSIA--NGFTMCTGSYGVRG 279 >sp|A0MD28|RPOA_PRRSS Replicase polyprotein 1ab OS=Porcine reproductive and respiratory syndrome virus (isolate Pig/United States/SD 01-08/2001) OX=857306 PE=1 SV=2 Length=3838 Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust. Identities = 53/259 (20%), Positives = 98/259 (38%), Gaps = 58/259 (22%) Query 517 DSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLL 576 D S + D + A + T+T LK +K + RT+ G + + +R + Sbjct 2679 DVQSIPEIDEMCARAVKENWQTVTPCTLKKQYCSKPKTRTILGTNNFIALAHRSALSGVT 2738 Query 577 KS-IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMAS 635 ++ + + + +G +KF K ++ V L D CDR+ P ++R + Sbjct 2739 QAFMKKAWKSPIALGKNKF--------KELHCTVAGRCLEA-DLASCDRSTPAIVRWFVA 2789 Query 636 LVLARKHTTCCSLSHRFYRLANECAQVLS--------EMVMCGGSLYVKPGGTSSGDATT 687 +L Y LA C + L ++V + K GG SSGD T Sbjct 2790 NLL--------------YELAG-CEEYLPSYVLNCCHDLVATQDGAFTKRGGLSSGDPVT 2834 Query 688 AYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYA 747 + +N+V+++ + QH + L ++ F+ E Sbjct 2835 SVSNTVYSL-----------------------IIYAQHMVLSALKMGHEIGLKFLEEQLK 2871 Query 748 Y--LRKHFSMMILSDDAVV 764 + L + M++ SDD V+ Sbjct 2872 FEDLLEIQPMLVYSDDLVL 2890 >sp|P18478|POLG_WMV2U Genome polyprotein (Fragment) OS=Watermelon mosaic virus II (isolate USA) OX=148360 PE=1 SV=3 Length=1017 Score = 37.7 bits (86), Expect = 0.66, Method: Compositional matrix adjust. Identities = 59/269 (22%), Positives = 110/269 (41%), Gaps = 46/269 (17%) Query 454 DYYRYNLPTM---CDIRQLLFVVE-VVDKYFDCYDGGC--INANQVIVNNLDKSAGFPFN 507 D+++YN P + D VE V+ D C + I +L+ A Sbjct 291 DFFKYNKPVVLNEVDFNAFEKAVEGVITMMVDFEFAECLFVTDPDEIYGSLNMKAAVGAQ 350 Query 508 KWGKARLYYDSM-SYEDQDALFAYTKR--NVIPTITQMNLKYAISA-----KNRART--- 556 GK + Y+ M S++ + L+ +R N I +LK + N+ RT Sbjct 351 YKGKKQDYFSGMDSFDKERLLYLSCERLFNGEKGIWNGSLKAELRPIEKVQANKTRTFTA 410 Query 557 -----VAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVEN 611 + G +C N QF+ LK +G +KFYGGW +++++ Sbjct 411 APLDTLLGAKVCVDDFNNQFYSFNLK-------CPWTVGMTKFYGGWDKLMRSLPD---- 459 Query 612 PHLMGWDYPKCDRAM--PNMLRIMASLVLARKHTTCCSLSHRFY---RLANECAQVL-SE 665 GW Y D + ++ ++ + VL+ + CC + + L N A+++ + Sbjct 460 ----GWTYCHADGSQFDSSLTPLLLNAVLSIR---CCFMEDWWVGREMLENLYAEIVYTP 512 Query 666 MVMCGGSLYVKPGGTSSGDATTAYANSVF 694 ++ G+++ K G +SG +T N++ Sbjct 513 ILAPDGTIFKKFRGNNSGQPSTVVDNTLM 541 >sp|Q83017|RPOA_LDVP Replicase polyprotein 1ab OS=Lactate dehydrogenase elevating virus (strain Plagemann) OX=300016 GN=rep PE=1 SV=2 Length=3616 Score = 37.7 bits (86), Expect = 0.66, Method: Compositional matrix adjust. Identities = 44/183 (24%), Positives = 73/183 (40%), Gaps = 27/183 (15%) Query 520 SYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKS- 578 S+ D DAL T+T LK +K++ RT+ G + + R + + Sbjct 2506 SHPDIDALCKRACEEHWQTVTPCTLKKQYCSKSKTRTILGTNNFVALGLRSALSGVTQGF 2565 Query 579 IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLR-----IM 633 + G + +G +KF T + D CDR+ P ++R ++ Sbjct 2566 MRKGIGTPICLGKNKF---------TPLPVRIGGRCLEADLASCDRSTPAIIRWFTTNLL 2616 Query 634 ASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSV 693 L A + L N C V+S M C + K GG SSGD T+ +N+V Sbjct 2617 FELAGAEEWIPSYVL--------NCCHDVVSTMSGC----FDKRGGLSSGDPVTSISNTV 2664 Query 694 FNI 696 +++ Sbjct 2665 YSL 2667 >sp|Q89330|POLG_ZYMVR Genome polyprotein OS=Zucchini yellow mosaic virus (strain Reunion Island) OX=117129 PE=3 SV=1 Length=3083 Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust. Identities = 57/270 (21%), Positives = 110/270 (41%), Gaps = 48/270 (18%) Query 454 DYYRYNLPTMCDIRQLLFVVEVVDKY------FDCYDGGCINANQVIVNNLDKSAGFPFN 507 D+++YN P + + +E VD F+ + I + I ++L+ A Sbjct 2359 DFFKYNKPVIVNQLDHDKFLEAVDGVIRMMCDFEFNECRFITDPEEIYSSLNMKAAIGAQ 2418 Query 508 KWGKARLYYDSM-SYEDQDALFAYTKR--NVIPTITQMNLKYAISA-----KNRART--- 556 GK + Y++ + +++ + LF +R N + +LK + N+ RT Sbjct 2419 YRGKKKEYFEGLDNFDMERLLFQSCERLFNGYKGLWNGSLKAELRPLEKVQANKTRTFTA 2478 Query 557 -----VAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVEN 611 + G +C N +F+ K LK +G SKFYGGW +++ + Sbjct 2479 APIDTLLGAKVCVDDFNNEFYSKNLK-------CPWTVGMSKFYGGWDKLMRALPD---- 2527 Query 612 PHLMGWDYPKCDRAM------PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL-S 664 GW Y D + P +L A L++ + + L N A+++ + Sbjct 2528 ----GWLYCHADGSQFDSSLTPALLN--AVLIIRSFYMEDWWVGQEM--LENLYAEIVYT 2579 Query 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVF 694 ++ G+++ K G +SG +T N++ Sbjct 2580 PILAPDGTIFKKFRGNNSGQPSTVVDNTLM 2609 >sp|B1KEK5|PYRC_SHEWM Dihydroorotase OS=Shewanella woodyi (strain ATCC 51908 / MS32) OX=392500 GN=pyrC PE=3 SV=1 Length=344 Score = 35.8 bits (81), Expect = 1.6, Method: Compositional matrix adjust. Identities = 39/159 (25%), Positives = 66/159 (42%), Gaps = 27/159 (17%) Query 445 DGNAAISDYDYYRYNLPTMCDIRQLLFV-VEVVDKYFDCYDGGCINANQVIVNNLDKSA- 502 + +AA+ D TM +I LL V EV + + D +D + I NL + Sbjct 107 NSDAAVKGLDALFPIFETMAEIGMLLLVHGEVTESHIDIFDREAL----FIERNLSRIVD 162 Query 503 GFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGV-- 560 FP + ++ ++ ++ ++ NV TIT +L NR + G Sbjct 163 AFP-----QLKVVFEHITTKEAAEFVTSASDNVAATITPQHLLL-----NRNDLLVGGVR 212 Query 561 --SICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGG 597 + C + R HQ+ L++ AT G+SKF+ G Sbjct 213 PHNFCLPVLKRNIHQEALRAAVAT-------GSSKFFLG 244 >sp|Q492K3|HISX_BLOPB Histidinol dehydrogenase OS=Blochmanniella pennsylvanica (strain BPEN) OX=291272 GN=hisD PE=3 SV=1 Length=443 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 16/110 (15%) Query 706 ALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVC 765 A+L T + IA+K + L H+ + L RN V +N S MI++++ + C Sbjct 271 AILITPYSCIAEKTKKEL-HKQLKILPRNDIVRNVLLN----------SRMIITNNLMEC 319 Query 766 FN--STYASQGLVASIKNFKSVLYYQNN---VFMSEAKCWTETDLTKGPH 810 F+ ++YA + L+ I+N L+Y N +F+ T D GP+ Sbjct 320 FSISNSYAPEHLIIQIENASDYLHYITNAGSIFLGNWSPETAGDYASGPN 369 >sp|P19811|RPOA_EAVBU Replicase polyprotein 1ab OS=Equine arteritis virus (strain Bucyrus) OX=299386 GN=rep PE=1 SV=3 Length=3175 Score = 35.0 bits (79), Expect = 4.3, Method: Compositional matrix adjust. Identities = 45/218 (21%), Positives = 86/218 (39%), Gaps = 49/218 (22%) Query 520 SYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAG--------VSICSTMTNRQF 571 SY D + + + ++ + T T K +K + R++ G + C + F Sbjct 2032 SYCLIDDMVSQSMKSNLQTATMATCKRQYCSKYKIRSILGTNNYIGLGLRACLSGVTAAF 2091 Query 572 HQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENP--HLMGWDYPKCDRAMPNM 629 + A G+ + +G SKF + P + + D CDR+ P + Sbjct 2092 QK------AGKDGSPIYLGKSKF------------DPIPAPDKYCLETDLESCDRSTPAL 2133 Query 630 LRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS-------EMVMCGGSLYVKPGGTSS 682 +R A+ + + LA + V S ++V+ G + K GG SS Sbjct 2134 VRWFAT--------------NLIFELAGQPELVHSYVLNCCHDLVVAGSVAFTKRGGLSS 2179 Query 683 GDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 GD T+ +N+++++ + L +IA+KY+ Sbjct 2180 GDPITSISNTIYSLVLYTQHMLLCGLEGYFPEIAEKYL 2217 >sp|O36979|POLG_ZYMVS Genome polyprotein OS=Zucchini yellow mosaic virus (strain Singapore) OX=117130 PE=3 SV=2 Length=3083 Score = 34.7 bits (78), Expect = 6.0, Method: Compositional matrix adjust. Identities = 59/270 (22%), Positives = 112/270 (41%), Gaps = 48/270 (18%) Query 454 DYYRYNLPTMC---DIRQLLFVVEVVDKY---FDCYDGGCINANQVIVNNLDKSAGFPFN 507 D+++YN P + D + L V V + F+ + I + I ++L+ A Sbjct 2359 DFFKYNKPVVVNQLDHDKFLGAVNGVIRMMCDFEFNECRFITDPEEIYDSLNMKAAIGAQ 2418 Query 508 KWGKARLYYDSM-SYEDQDALFAYTKR--NVIPTITQMNLKYAISA-----KNRART--- 556 GK + Y++ + +++ + LF +R N + +LK + N+ RT Sbjct 2419 YRGKKKEYFEGLDNFDRERLLFQSCERLFNGHKGLWNGSLKAELRPLEKVQANKTRTFTA 2478 Query 557 -----VAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVEN 611 + G +C N +F+ K LK +G +KFYGGW +++ E Sbjct 2479 APIDTLLGAKVCVDDFNNEFYSKNLK-------CPWTVGMTKFYGGWDKLMR------EL 2525 Query 612 PHLMGWDYPKCDRAM------PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL-S 664 P GW Y D + P +L A L++ + + L N A+++ + Sbjct 2526 PD--GWLYCHADGSQFDSSLTPALLN--AVLIIRSFYMEDWWVGQEM--LENLYAEIVYT 2579 Query 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVF 694 ++ G+++ K G +SG +T N++ Sbjct 2580 PILAPDGTIFKKFRGNNSGQPSTVVDNTLM 2609 >sp|Q0CRF3|ATG5_ASPTN Autophagy protein 5 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=atg5 PE=3 SV=2 Length=315 Score = 33.5 bits (75), Expect = 9.6, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%) Query 161 DWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFG 220 DW D +++R+ A+ G + A + +V+ D MRN G++TL +D +G W Sbjct 129 DWPDE----ELVRLDAD-GMVMHDAFINSVKEADFMRNGTAKGIMTLSKEDSSGLWKSVQ 183 Query 221 D 221 D Sbjct 184 D 184 Lambda K H a alpha 0.324 0.137 0.428 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 108132787668 Results from round 2 Query= YP_009725307.1 RNA-dependent RNA polymerase [Severe acute respiratory syndrome coronavirus 2] Length=932 Score E Sequences producing significant alignments: (Bits) Value Sequences used in model and found again: sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute res... 1536 0.0 sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus... 1534 0.0 sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus... 1534 0.0 sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute re... 1533 0.0 sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus... 1531 0.0 sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus... 1522 0.0 sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus... 1516 0.0 sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus... 1512 0.0 sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East res... 1505 0.0 sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavi... 1477 0.0 sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavir... 1476 0.0 sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus... 1471 0.0 sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavi... 1464 0.0 sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavi... 1459 0.0 sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavi... 1459 0.0 sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus... 1459 0.0 sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavir... 1457 0.0 sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavir... 1455 0.0 sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemi... 1452 0.0 sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavir... 1451 0.0 sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavir... 1451 0.0 sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavir... 1451 0.0 sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavir... 1449 0.0 sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavir... 1436 0.0 sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavir... 1416 0.0 sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmi... 1402 0.0 sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavir... 1374 0.0 sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectiou... 1372 0.0 sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious... 1372 0.0 sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious... 1367 0.0 sp|Q9WQ77|R1AB_CVRSD Replicase polyprotein 1ab (Fragment) OS=Rat ... 468 8e-158 sp|Q9WQ76|R1AB_CVTMI Replicase polyprotein 1ab (Fragment) OS=Turk... 438 4e-146 sp|P0C6V7|R1AB_BEV Replicase polyprotein 1ab OS=Berne virus OX=11... 458 3e-137 sp|P0C6V8|R1AB_BRV1 Replicase polyprotein 1ab OS=Breda virus 1 OX... 449 3e-134 sp|Q008X6|R1AB_WBV24 Replicase polyprotein 1ab OS=White bream vir... 389 1e-113 sp|F8RL29|R1AB_AMV79 Replicase polyprotein 1ab OS=Alphamesoniviru... 348 7e-100 sp|A6YQT5|RPOA_PRRSV Replicase polyprotein 1ab OS=Porcine reprodu... 262 3e-71 sp|Q9WJB2|RPOA_PRRSR Replicase polyprotein 1ab OS=Porcine reprodu... 262 3e-71 sp|Q8B912|RPOA_PRRSB Replicase polyprotein 1ab OS=Porcine reprodu... 260 1e-70 sp|Q68772|RPOA_SHFV Replicase polyprotein 1ab OS=Simian hemorrhag... 246 7e-66 Sequences not found previously or not previously below threshold: sp|Q9YN02|RPOA_PRRS1 Replicase polyprotein 1ab OS=Porcine reprodu... 259 3e-70 sp|A0MD28|RPOA_PRRSS Replicase polyprotein 1ab OS=Porcine reprodu... 225 3e-59 sp|Q04561|RPOA_PRRSL Replicase polyprotein 1ab OS=Porcine reprodu... 225 3e-59 sp|Q83017|RPOA_LDVP Replicase polyprotein 1ab OS=Lactate dehydrog... 200 3e-51 sp|Q06502|RPOA_LDVC Replicase polyprotein 1ab OS=Lactate dehydrog... 197 3e-50 sp|P19811|RPOA_EAVBU Replicase polyprotein 1ab OS=Equine arteriti... 178 4e-44 sp|Q01901|POLG_PRSVH Genome polyprotein OS=Papaya ringspot virus ... 60.5 8e-08 sp|P18479|POLG_ZYMVC Genome polyprotein OS=Zucchini yellow mosaic... 60.1 1e-07 sp|O36979|POLG_ZYMVS Genome polyprotein OS=Zucchini yellow mosaic... 57.4 7e-07 sp|P18478|POLG_WMV2U Genome polyprotein (Fragment) OS=Watermelon ... 57.0 8e-07 sp|Q89330|POLG_ZYMVR Genome polyprotein OS=Zucchini yellow mosaic... 56.2 2e-06 sp|A0AUJ5|POLG_BVY3 Genome polyprotein OS=Blackberry virus Y (iso... 53.5 1e-05 sp|O56075|POLG_PEMVM Genome polyprotein OS=Peanut mottle virus (s... 53.1 2e-05 sp|P89876|POLG_LMVE Genome polyprotein OS=Lettuce mosaic virus (s... 49.3 2e-04 sp|Q65399|POLG_BCMNN Genome polyprotein OS=Bean common mosaic nec... 49.3 2e-04 sp|P17765|POLG_BYMV Genome polyprotein OS=Bean yellow mosaic viru... 48.9 2e-04 sp|Q01681|POLG_PPVEA Genome polyprotein (Fragment) OS=Plum pox po... 48.1 4e-04 sp|P36287|POLG_SMSV4 Genome polyprotein (Fragment) OS=San Miguel ... 48.1 4e-04 sp|P20234|POLG_OMV Genome polyprotein (Fragment) OS=Ornithogalum ... 48.1 4e-04 sp|Q01500|POLG_PEMVC Genome polyprotein OS=Pepper mottle virus (i... 48.1 5e-04 sp|P19723|POLG_PRSVP Genome polyprotein (Fragment) OS=Papaya ring... 47.7 5e-04 sp|Q65730|POLG_BSTV1 Genome polyprotein OS=Brome streak virus (st... 48.1 5e-04 sp|P17766|POLG_PPVNA Genome polyprotein OS=Plum pox potyvirus (is... 48.1 5e-04 sp|Q65729|POLG_BSTVG Genome polyprotein (Fragment) OS=Brome strea... 47.4 7e-04 sp|P09814|POLG_TVMV Genome polyprotein OS=Tobacco vein mottling v... 47.4 8e-04 sp|P13529|POLG_PPVD Genome polyprotein OS=Plum pox potyvirus (str... 47.4 0.001 sp|P21231|POLG_SBMVN Genome polyprotein OS=Soybean mosaic virus (... 47.0 0.001 sp|P17767|POLG_PPVRA Genome polyprotein OS=Plum pox potyvirus (st... 47.0 0.001 sp|Q90069|POLG_SBMVG Genome polyprotein OS=Soybean mosaic virus (... 47.0 0.001 sp|P29152|POLG_PSBMV Genome polyprotein OS=Pea seed-borne mosaic ... 47.0 0.001 sp|Q6XW15|POLG_BTMV Genome polyprotein OS=Beet mosaic virus OX=11... 46.6 0.002 sp|Q84934|POLG_PPVSK Genome polyprotein OS=Plum pox potyvirus (st... 46.2 0.002 sp|P31999|POLG_LMV0 Genome polyprotein OS=Lettuce mosaic virus (s... 46.2 0.002 sp|Q8JV21|POLG_LJUV1 Genome polyprotein OS=Ljunganvirus 1 OX=1001... 45.8 0.002 sp|P19724|POLG_PRSVW Genome polyprotein (Fragment) OS=Papaya ring... 45.4 0.002 sp|P36286|POLG_SMSV1 Genome polyprotein OS=San Miguel sea lion vi... 45.8 0.002 sp|Q02963|POLG_PVYHU Genome polyprotein OS=Potato virus Y (strain... 45.4 0.003 sp|Q9WAL8|POL1_SDVS5 RNA1 polyprotein OS=Satsuma dwarf virus (iso... 44.7 0.005 sp|O11436|POLG_RGMVD Genome polyprotein OS=Ryegrass mosaic virus ... 44.3 0.007 sp|Q9DUN3|POLG_VESVA Genome polyprotein OS=Vesicular exanthema of... 43.9 0.008 sp|P04517|POLG_TEV Genome polyprotein OS=Tobacco etch virus OX=12... 44.3 0.008 sp|E5D8F2|POLG_HRV15 Genome polyprotein OS=Human rhinovirus C (st... 43.9 0.009 sp|O73556|POLG_HPE2W Genome polyprotein OS=Human parechovirus 2 (... 43.5 0.011 sp|Q66474|POLG_EC06C Genome polyprotein OS=Echovirus 6 (strain Ch... 43.5 0.011 sp|Q66578|POLG_HPE1H Genome polyprotein OS=Human parechovirus 1 (... 43.1 0.016 sp|Q96725|POLG_EBHSG Genome polyprotein OS=European brown hare sy... 43.1 0.017 sp|Q9YID8|POLG_HPEV5 Genome polyprotein OS=Human parechovirus 5 (... 42.7 0.020 sp|O41174|POLG_PEV9U Genome polyprotein OS=Porcine enterovirus 9 ... 42.7 0.021 sp|P18247|POLG_PVYN Genome polyprotein OS=Potato virus Y (strain ... 42.7 0.021 sp|Q66849|POLG_EC09H Genome polyprotein OS=Echovirus 9 (strain Hi... 42.3 0.026 sp|P21404|POLG_CXA9 Genome polyprotein OS=Coxsackievirus A9 (stra... 42.3 0.028 sp|Q9WN78|POLG_EC30B Genome polyprotein OS=Echovirus 30 (strain B... 42.3 0.028 sp|Q76L40|POL1_BBWVS RNA1 polyprotein OS=Broad bean wilt virus 1 ... 42.0 0.032 sp|Q9QL88|POLG_CXB6S Genome polyprotein OS=Coxsackievirus B6 (str... 42.0 0.033 sp|Q86117|POLG_RHDVS Genome polyprotein OS=Rabbit hemorrhagic dis... 42.0 0.034 sp|P27410|POLG_RHDVF Genome polyprotein OS=Rabbit hemorrhagic dis... 42.0 0.034 sp|Q89273|POLG_RHDVB Genome polyprotein OS=Rabbit hemorrhagic dis... 42.0 0.034 sp|Q86119|POLG_RHDVA Genome polyprotein OS=Rabbit hemorrhagic dis... 42.0 0.034 sp|Q65900|POLG_CX16G Genome polyprotein OS=Coxsackievirus A16 (st... 42.0 0.035 sp|P08291|POLG_CXB1J Genome polyprotein OS=Coxsackievirus B1 (str... 42.0 0.038 sp|Q8V736|POLG_CACV4 Genome polyprotein OS=Canine calicivirus (st... 42.0 0.039 sp|P89201|POLG_SPMMV Genome polyprotein OS=Sweet potato mild mott... 42.0 0.039 sp|P36312|POL1_CPSMV RNA1 polyprotein OS=Cowpea severe mosaic vir... 41.6 0.040 sp|P12916|POLG_HRV1B Genome polyprotein OS=Human rhinovirus 1B OX... 41.6 0.043 sp|P29813|POLG_EC11G Genome polyprotein OS=Echovirus 11 (strain G... 41.6 0.050 sp|Q82122|POLG_HRV16 Genome polyprotein OS=Human rhinovirus 16 OX... 41.6 0.051 sp|P16604|POLG_SVDVH Genome polyprotein OS=Swine vesicular diseas... 41.6 0.051 sp|Q66575|POLG_EC12T Genome polyprotein OS=Echovirus 12 (strain T... 41.6 0.051 sp|P13900|POLG_SVDVU Genome polyprotein OS=Swine vesicular diseas... 41.2 0.053 sp|Q85197|POLG_PVMA Genome polyprotein OS=Potato virus A OX=12215... 41.2 0.059 sp|P23008|POLG_HRV1A Genome polyprotein OS=Human rhinovirus 1A OX... 41.2 0.059 sp|Q66282|POLG_CXB3W Genome polyprotein OS=Coxsackievirus B3 (str... 41.2 0.059 sp|P27411|POLG_RHDV3 Genome polyprotein OS=Rabbit hemorrhagic dis... 40.8 0.071 sp|Q9YLJ1|POLG_EC05N Genome polyprotein OS=Echovirus 5 (strain No... 40.8 0.079 sp|Q66577|POLG_EC09B Genome polyprotein OS=Echovirus 9 (strain Ba... 40.8 0.079 sp|Q9YLG5|POLG_CXB2O Genome polyprotein OS=Coxsackievirus B2 (str... 40.4 0.098 sp|Q672I1|POLG_SVSAP Genome polyprotein OS=Sapporo virus (isolate... 40.0 0.12 sp|Q69014|POLG_SVM93 Genome polyprotein OS=Sapporo virus (strain ... 40.0 0.12 sp|Q03053|POLG_CXB5P Genome polyprotein OS=Coxsackievirus B5 (str... 40.0 0.13 sp|B9VUU3|POLG_HE71 Genome polyprotein OS=Human enterovirus 71 OX... 39.7 0.16 sp|A4KZ49|POLG_TRMVU Genome polyprotein OS=Triticum mosaic virus ... 39.7 0.17 sp|O91734|POLG_EC01F Genome polyprotein OS=Echovirus 1 (strain Hu... 39.3 0.20 sp|P90245|POL1_BAMMN Genome polyprotein 1 OS=Barley mild mosaic v... 39.3 0.24 sp|P12915|POLG_BOVEV Genome polyprotein OS=Bovine enterovirus (st... 39.3 0.24 sp|Q05057|POLG_PYFV1 Genome polyprotein OS=Parsnip yellow fleck v... 38.9 0.29 sp|Q86887|POLG_CXB4E Genome polyprotein OS=Coxsackievirus B4 (str... 38.9 0.31 sp|Q9QF31|POLG_CX16T Genome polyprotein OS=Coxsackievirus A16 (st... 38.9 0.32 sp|P89657|RDRP_PMMVJ Replicase large subunit OS=Pepper mild mottl... 38.5 0.36 sp|Q12018|CDC53_YEAST Cell division control protein 53 OS=Sacchar... 38.5 0.36 sp|P89509|POLG_TUMVJ Genome polyprotein OS=Turnip mosaic virus (s... 38.5 0.38 sp|P08292|POLG_CXB4J Genome polyprotein OS=Coxsackievirus B4 (str... 38.5 0.38 sp|Q8JN60|POLG_BECNB Genome polyprotein OS=Bovine enteric caliciv... 38.5 0.41 sp|P14879|PYR4_MICDP Phycobilisome 31.6 kDa linker polypeptide, p... 37.3 0.53 sp|Q8B3M2|POLG_DWV Genome polyprotein OS=Deformed wing virus OX=1... 38.1 0.53 sp|Q85036|RDRP_ROTPY RNA-directed RNA polymerase OS=Rotavirus A (... 37.7 0.67 sp|Q6W8W5|POL1_ARMVN RNA1 polyprotein OS=Arabis mosaic virus (iso... 37.7 0.68 sp|Q02597|POLG_TUMVQ Genome polyprotein OS=Turnip mosaic virus (s... 37.7 0.71 sp|P04936|POLG_HRV2 Genome polyprotein OS=Human rhinovirus 2 OX=1... 37.3 0.84 sp|P03313|POLG_CXB3N Genome polyprotein OS=Coxsackievirus B3 (str... 37.3 0.87 sp|P29098|RDRP_PMMVS Replicase large subunit OS=Pepper mild mottl... 37.3 0.95 sp|Q6XDK8|POLG_SVM10 Genome polyprotein OS=Sapporo virus (isolate... 37.3 0.96 sp|Q04574|POL1_BAYMG Genome polyprotein 1 OS=Barley yellow mosaic... 37.3 0.96 sp|A1XIP9|POL1_TOTV RNA1 polyprotein OS=Tomato torrado virus (iso... 37.3 1.00 sp|A7J3A2|RDRP_ROTYO RNA-directed RNA polymerase OS=Rotavirus A (... 36.6 1.3 sp|P03302|POLG_POL3L Genome polyprotein OS=Poliovirus type 3 (str... 37.0 1.3 sp|Q66479|POLG_HE71M Genome polyprotein OS=Human enterovirus 71 (... 36.6 1.4 sp|A4ZCW8|RDRP_ROTHW RNA-directed RNA polymerase OS=Rotavirus A (... 36.6 1.5 sp|B1NKR3|RDRP_ROTAD RNA-directed RNA polymerase OS=Rotavirus A (... 36.6 1.5 sp|P17699|RDRP_ROTPG RNA-directed RNA polymerase OS=Rotavirus A (... 36.6 1.5 sp|B1NKU1|RDRP_ROTWI RNA-directed RNA polymerase OS=Rotavirus A (... 36.6 1.6 sp|Q30XF7|TGT_OLEA2 Queuine tRNA-ribosyltransferase OS=Oleidesulf... 36.2 1.6 sp|P03303|POLG_HRV14 Genome polyprotein OS=Human rhinovirus 14 OX... 36.6 1.7 sp|P22055|POLG_CXA21 Genome polyprotein OS=Coxsackievirus A21 (st... 36.2 1.8 sp|P03300|POLG_POL1M Genome polyprotein OS=Poliovirus type 1 (str... 36.2 1.8 sp|P06210|POLG_POL2L Genome polyprotein OS=Poliovirus type 2 (str... 36.2 1.8 sp|P06209|POLG_POL32 Genome polyprotein OS=Poliovirus type 3 (str... 36.2 1.9 sp|P03301|POLG_POL1S Genome polyprotein OS=Poliovirus type 1 (str... 36.2 2.0 sp|B1NKT7|RDRP_ROTHT RNA-directed RNA polymerase OS=Rotavirus A (... 35.8 2.3 sp|Q9QNB3|RDRP_ROTHK RNA-directed RNA polymerase OS=Rotavirus A (... 35.8 2.3 sp|P36290|POLG_CXA24 Genome polyprotein OS=Coxsackievirus A24 (st... 36.2 2.3 sp|C6KEF6|POLG_HKV1 Genome polyprotein OS=Human klassevirus 1 OX=... 36.2 2.3 sp|Q8V5E0|POL1_BRAV RNA1 polyprotein OS=Blackcurrant reversion as... 35.8 2.4 sp|Q09725|MIS4_SCHPO Sister chromatid cohesion protein mis4 OS=Sc... 35.4 3.0 sp|P11398|PYR1_MASLA Phycobilisome 32.1 kDa linker polypeptide, p... 34.6 3.5 sp|B9E0V5|RSMH_CLOK1 Ribosomal RNA small subunit methyltransferas... 34.3 4.5 sp|B1KEK5|PYRC_SHEWM Dihydroorotase OS=Shewanella woodyi (strain ... 34.6 4.6 sp|P17468|RDRP_ROTRF RNA-directed RNA polymerase OS=Rotavirus A (... 35.0 4.6 sp|Q82081|POLG_HRV3 Genome polyprotein OS=Human rhinovirus 3 OX=4... 35.0 4.6 sp|B1NKS9|RDRP_ROTHP RNA-directed RNA polymerase OS=Rotavirus A (... 35.0 4.8 sp|Q6W8W4|POL1_RRVC RNA1 polyprotein OS=Raspberry ringspot virus ... 34.6 5.4 sp|Q3ZK55|RDRP_ROT41 RNA-directed RNA polymerase OS=Rotavirus A (... 34.3 6.5 sp|A7J398|RDRP_ROTBN RNA-directed RNA polymerase OS=Rotavirus A (... 34.3 7.0 sp|P21615|RDRP_ROTBU RNA-directed RNA polymerase OS=Rotavirus A (... 34.3 7.1 sp|B2BMF7|RDRP_ROTW3 RNA-directed RNA polymerase OS=Rotavirus A (... 34.3 7.6 sp|A4G060|MFNA_METM5 Probable L-tyrosine/L-aspartate decarboxylas... 33.9 8.0 sp|A6VIC0|MFNA_METM7 Probable L-tyrosine/L-aspartate decarboxylas... 33.9 8.1 sp|A3DSK5|RDRP_ROTHL RNA-directed RNA polymerase OS=Rotavirus A (... 34.3 8.1 sp|Q288N7|POLG_BECN1 Genome polyprotein OS=Bovine enteric caliciv... 34.3 8.7 sp|Q68T42|POLG_HED68 Genome polyprotein OS=Human enterovirus D68 ... 33.9 9.4 sp|B2BMQ6|RDRP_ROTH6 RNA-directed RNA polymerase OS=Rotavirus A (... 33.9 9.4 >sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute respiratory syndrome coronavirus OX=694009 GN=rep PE=1 SV=1 Length=7073 Score = 1536 bits (3976), Expect = 0.0, Method: Composition-based stats. Identities = 898/932 (96%), Positives = 916/932 (98%), Gaps = 0/932 (0%) Query 1 SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 SADA +FLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYN+KVAGFAKFLKTNCCRFQEKD Sbjct 4370 SADASTFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNEKVAGFAKFLKTNCCRFQEKD 4429 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 E+ NL+DSYFVVKRHT SNYQHEETIYNL+KDCPAVA HDFFKFR+DGDMVPHISRQRLT Sbjct 4430 EEGNLLDSYFVVKRHTMSNYQHEETIYNLVKDCPAVAVHDFFKFRVDGDMVPHISRQRLT 4489 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE Sbjct 4490 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 4549 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 RVRQ+LLKTVQFCDAMR+AGIVGVLTLDNQDLNGNWYDFGDF+Q PG GVP+VDSYYSL Sbjct 4550 RVRQSLLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSL 4609 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 LMPILTLTRAL AESH+D DL KP IKWDLLKYDFTEERL LFDRYFKYWDQTYHPNC+N Sbjct 4610 LMPILTLTRALAAESHMDADLAKPLIKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCIN 4669 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN Sbjct 4670 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 4729 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY Sbjct 4730 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 4789 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF Sbjct 4790 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 4849 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT Sbjct 4850 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 4909 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN Sbjct 4910 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 4969 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 MLKTVYSDVE PHLMGWDYPKCDRAMPNMLRIMASLVLARKH TCC+LSHRFYRLANECA Sbjct 4970 MLKTVYSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHNTCCNLSHRFYRLANECA 5029 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV Sbjct 5030 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 5089 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 RNLQHRLYECLYRNRDVD +FV+EFYAYLRKHFSMMILSDDAVVC+NS YA+QGLVASIK Sbjct 5090 RNLQHRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIK 5149 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 NFK+VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA Sbjct 5150 NFKAVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 5209 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML Sbjct 5210 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 5269 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ Sbjct 5270 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 5301 >sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus Rp3/2004 OX=349344 GN=rep PE=3 SV=1 Length=7071 Score = 1534 bits (3972), Expect = 0.0, Method: Composition-based stats. Identities = 897/932 (96%), Positives = 914/932 (98%), Gaps = 0/932 (0%) Query 1 SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 SADA +FLNRVCGVSAARLTPCGTG STDVVYRAFDIYN+KVAGFAKFLKTNCCRFQEKD Sbjct 4368 SADASTFLNRVCGVSAARLTPCGTGISTDVVYRAFDIYNEKVAGFAKFLKTNCCRFQEKD 4427 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 E+ NL+DSYFVVKRHT SNYQHEETIYNL+KDCPAVA HDFFKFR+DGDMVPHISRQRLT Sbjct 4428 EEGNLLDSYFVVKRHTMSNYQHEETIYNLVKDCPAVAVHDFFKFRVDGDMVPHISRQRLT 4487 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE Sbjct 4488 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 4547 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 RVRQALLKTVQFCDAMR+AGIVGVLTLDNQDLNGNWYDFGDF+Q PG GVP+VDSYYSL Sbjct 4548 RVRQALLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSL 4607 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 LMPILTLTRAL AESH+D DL KP IKWDLLKYDFT ERL LFDRYFKYWDQTYHPNC+N Sbjct 4608 LMPILTLTRALAAESHMDADLAKPLIKWDLLKYDFTAERLCLFDRYFKYWDQTYHPNCIN 4667 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN Sbjct 4668 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 4727 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY Sbjct 4728 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 4787 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF Sbjct 4788 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 4847 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT Sbjct 4848 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 4907 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN Sbjct 4908 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 4967 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 MLKTVYSDVE PHLMGWDYPKCDRAMPNMLRIMASLVLARKH+TCC+LSHRFYRLANECA Sbjct 4968 MLKTVYSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHSTCCNLSHRFYRLANECA 5027 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV Sbjct 5028 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 5087 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 RNLQHRLYECLYRNRDVD +FV EFYAYLRKHFSMMILSDDAVVC+NS YA+QGLVASIK Sbjct 5088 RNLQHRLYECLYRNRDVDHEFVGEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIK 5147 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 NFK+VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA Sbjct 5148 NFKAVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 5207 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML Sbjct 5208 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 5267 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ Sbjct 5268 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 5299 >sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus HKU3 OX=442736 GN=rep PE=3 SV=1 Length=7067 Score = 1534 bits (3971), Expect = 0.0, Method: Composition-based stats. Identities = 891/932 (96%), Positives = 918/932 (98%), Gaps = 0/932 (0%) Query 1 SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 SADA +FLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYN+KVAGFAKFLKTNCCRFQEKD Sbjct 4364 SADASTFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNEKVAGFAKFLKTNCCRFQEKD 4423 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 E+ NL+DSYFVVKRHT SNYQHEETIYNL+K+CPAVA HDFFKFR+DGDMVPHISRQRLT Sbjct 4424 EEGNLLDSYFVVKRHTMSNYQHEETIYNLIKECPAVAVHDFFKFRVDGDMVPHISRQRLT 4483 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDD+YFNKKDWYDFVENPD+LRVYANLGE Sbjct 4484 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDNYFNKKDWYDFVENPDVLRVYANLGE 4543 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 RVR+ALLKTVQFCDAMR+AGIVGVLTLDNQDLNGNWYDFGDF+Q PG GVP+VDSYYSL Sbjct 4544 RVRRALLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSL 4603 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 LMPILTLT+AL AESH+D DL KP +KWDLLKYDFTEERL LFDRYFKYWDQTYHPNC+N Sbjct 4604 LMPILTLTKALAAESHMDADLAKPLVKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCIN 4663 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN Sbjct 4664 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 4723 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY Sbjct 4724 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 4783 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF Sbjct 4784 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 4843 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT Sbjct 4844 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 4903 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN Sbjct 4904 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 4963 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 MLKTVYSDVE+PHLMGWDYPKCDRAMPNMLRIMASL+LARKH+TCC+LSHRFYRLANECA Sbjct 4964 MLKTVYSDVESPHLMGWDYPKCDRAMPNMLRIMASLILARKHSTCCNLSHRFYRLANECA 5023 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV Sbjct 5024 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 5083 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 RNLQHRLYECLYRNRDVD +FV+EFYAYLRKHFSMMILSDDAVVC+NS YA+QGLVASIK Sbjct 5084 RNLQHRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIK 5143 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 NFK+VLYYQNNVFMSEAKCWTETDLT+GPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA Sbjct 5144 NFKAVLYYQNNVFMSEAKCWTETDLTRGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 5203 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML Sbjct 5204 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 5263 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ Sbjct 5264 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 5295 >sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute respiratory syndrome coronavirus 2 OX=2697049 GN=rep PE=1 SV=1 Length=7096 Score = 1533 bits (3970), Expect = 0.0, Method: Composition-based stats. Identities = 932/932 (100%), Positives = 932/932 (100%), Gaps = 0/932 (0%) Query 1 SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD Sbjct 4393 SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 4452 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT Sbjct 4453 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 4512 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE Sbjct 4513 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 4572 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL Sbjct 4573 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 4632 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN Sbjct 4633 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 4692 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN Sbjct 4693 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 4752 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY Sbjct 4753 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 4812 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF Sbjct 4813 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 4872 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT Sbjct 4873 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 4932 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN Sbjct 4933 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 4992 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA Sbjct 4993 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 5052 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV Sbjct 5053 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 5112 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK Sbjct 5113 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 5172 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA Sbjct 5173 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 5232 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML Sbjct 5233 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 5292 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ Sbjct 5293 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 5324 >sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus 279/2005 OX=389167 GN=rep PE=3 SV=1 Length=7079 Score = 1531 bits (3965), Expect = 0.0, Method: Composition-based stats. Identities = 894/932 (96%), Positives = 915/932 (98%), Gaps = 0/932 (0%) Query 1 SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 SADA +FLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYN++VAGFAKFLKTNCCRFQEKD Sbjct 4376 SADASTFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNERVAGFAKFLKTNCCRFQEKD 4435 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 E+ NL+DSYFVVKRHT SNYQHEETIYNL+K+CPAVA HDFFKFR+DGDMVPHISRQRLT Sbjct 4436 EEGNLLDSYFVVKRHTMSNYQHEETIYNLVKECPAVAVHDFFKFRVDGDMVPHISRQRLT 4495 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE Sbjct 4496 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 4555 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 RVRQALLKTVQFCDAMR+AGIVGVLTLDNQDLNGNWYDFGDF+Q PG GVP+VDSYYSL Sbjct 4556 RVRQALLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSL 4615 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 LMPILTLT+AL AESH+D DL KP IKWDLLKYDFTEERL LFDRYFKYWDQTYHPNC+N Sbjct 4616 LMPILTLTKALAAESHMDADLAKPLIKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCIN 4675 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN Sbjct 4676 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 4735 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY Sbjct 4736 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 4795 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF Sbjct 4796 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 4855 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQD LFAYTKRNVIPTIT Sbjct 4856 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDVLFAYTKRNVIPTIT 4915 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN Sbjct 4916 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 4975 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 MLKTVYSDVE PHLMGWDYPKCDRAMPNMLRIMASLVLARKH+TCC+LSHRFYRLANECA Sbjct 4976 MLKTVYSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHSTCCNLSHRFYRLANECA 5035 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV Sbjct 5036 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 5095 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 RNLQHRLYECLYRNRDVD +FV+EFYAYLRKHFSMMILSDDAVVC+NS YA+QGLVASIK Sbjct 5096 RNLQHRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIK 5155 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 NFK+V YYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA Sbjct 5156 NFKAVHYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 5215 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML Sbjct 5216 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 5275 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ Sbjct 5276 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 5307 >sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus HKU5 OX=694008 GN=rep PE=3 SV=1 Length=7182 Score = 1522 bits (3940), Expect = 0.0, Method: Composition-based stats. Identities = 659/934 (71%), Positives = 776/934 (83%), Gaps = 3/934 (0%) Query 2 ADAQSFLNRVCGV-SAARLTPCGTGTSTDVVYRAFDIYN--DKVAGFAKFLKTNCCRFQE 58 + +FLNRV G AR+ PC +G +TDVV+RAFDI N KVAG K+ KTN CRF E Sbjct 4468 SKDSNFLNRVRGSIVNARIEPCASGLTTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE 4527 Query 59 KDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQR 118 D++ + +DS+FVVKRHT NY+ E+ Y+L+KDC AVA HDFF F +D PHI RQR Sbjct 4528 VDDEGHRLDSFFVVKRHTMENYELEKRCYDLVKDCDAVAVHDFFIFDVDKVKTPHIVRQR 4587 Query 119 LTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANL 178 LT+YTM DLVYALRHFD+ NC+ LK ILV Y CCD YF+ K W+DFVENP+++ VY L Sbjct 4588 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCDASYFDNKLWFDFVENPNVISVYHKL 4647 Query 179 GERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYY 238 GER+RQA+L TV+FCD M +G+VGVLTLDNQDLNG WYDFGDF+ T PG+GV +VDSYY Sbjct 4648 GERIRQAVLNTVKFCDQMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 4707 Query 239 SLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNC 298 S LMP+L++T L AE+H D DLTKP I+W LL+YD+T+ ++ LF++YFK WDQ YHPNC Sbjct 4708 SYLMPVLSMTNCLAAETHRDCDLTKPLIEWPLLEYDYTDYKIGLFEKYFKXWDQQYHPNC 4767 Query 299 VNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQD 358 VNC DDRC+LHCANFNVLFS P TSFGP+VRKIFVDGVPFV+S GYH++ELG+V N D Sbjct 4768 VNCTDDRCVLHCANFNVLFSMTLPGTSFGPIVRKIFVDGVPFVISCGYHYKELGLVMNMD 4827 Query 359 VNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKD 418 V+LH RLS KEL++YAADPAMH AS + L D RT CFSVAALT + FQTV+PGNFNKD Sbjct 4828 VSLHRHRLSLKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKD 4887 Query 419 FYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDK 478 FYDF VSKGFFKEGSSV L+HFFFAQDG+AAI+DY YY YNLPTMCDI+Q+LF +EVVD+ Sbjct 4888 FYDFVVSKGFFKEGSSVTLRHFFFAQDGHAAITDYSYYAYNLPTMCDIKQMLFCMEVVDR 4947 Query 479 YFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPT 538 YF+ YDGGC+NA++VIVNNLDKSAG PFNK+GKAR+YY+S+SY++QD LFA TKRNV+PT Sbjct 4948 YFEIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESLSYQEQDELFAMTKRNVLPT 5007 Query 539 ITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGW 598 ITQMNLKYAISAKNRARTVAGVSI STMTNRQ+HQK+LKS+AATRG+T VIGT+KFYGGW Sbjct 5008 ITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGSTCVIGTTKFYGGW 5067 Query 599 HNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANE 658 MLKT+Y DV+NPHLMGWDYPKCDRAMPNM RI ASL+LARKH+TCC+ + RFYRLANE Sbjct 5068 DFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHSTCCTNTDRFYRLANE 5127 Query 659 CAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADK 718 CAQVLSE V+CGG YVKPGGTSSGDATTAYANSVFNI QA TANV+AL+ +GN I D+ Sbjct 5128 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNTIVDE 5187 Query 719 YVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVAS 778 V+++Q LY +YR D FV+ +YA+L KHFSMMILSDD VVC+NS YA++G +AS Sbjct 5188 EVKDMQFELYVNVYRKSQPDPKFVDRYYAFLNKHFSMMILSDDGVVCYNSDYATKGYIAS 5247 Query 779 IKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRIL 838 I+NFK LYYQNNVFMSEAKCW ETDL KGPHEFCSQHT+ +K GDD +LPYPDPSRIL Sbjct 5248 IQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLFIKDGDDGYFLPYPDPSRIL 5307 Query 839 GAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGH 898 AGCFVDDIVKTDGTLM+ERFVSLAIDAYPLTKH + EY +VF +YLQYI KL+ +LTGH Sbjct 5308 SAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHDDPEYQNVFWVYLQYIEKLYKDLTGH 5367 Query 899 MLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 MLD YSVML DN++++WE FY +YT T LQ Sbjct 5368 MLDSYSVMLCGDNSAKFWEESFYRDLYTAPTTLQ 5401 >sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus HKU4 OX=694007 GN=rep PE=1 SV=1 Length=7119 Score = 1516 bits (3924), Expect = 0.0, Method: Composition-based stats. Identities = 660/934 (71%), Positives = 777/934 (83%), Gaps = 3/934 (0%) Query 2 ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDK--VAGFAKFLKTNCCRFQE 58 + +FLNRV G S ARL PC +G +TDVVYRAFDI N K VAG K+ KTN CRF + Sbjct 4421 SKDTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQ 4480 Query 59 KDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQR 118 D++ + +DSYF+VKRHT SNY+ E+ Y+LLKDC AVA HDFF F +D PHI RQ Sbjct 4481 VDDEGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQS 4540 Query 119 LTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANL 178 LT+YTM DLVYALRHFD+ NC+ LK ILV Y CC+ YF+ K W+DFVENP ++ VY L Sbjct 4541 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKL 4600 Query 179 GERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYY 238 GER+RQA+L TV+ CD M +G+VGVLTLDNQDLNG WYDFGDF+ T PG+GV +VDSYY Sbjct 4601 GERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 4660 Query 239 SLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNC 298 S LMP+L++T L AE+H D D KP I+W LL+YD+T+ ++ LF++YFKYWDQTYHPNC Sbjct 4661 SYLMPVLSMTNCLAAETHKDCDFNKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQTYHPNC 4720 Query 299 VNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQD 358 VNC DDRCILHCANFNVLFS V P TSFGP+VRKIFVDGVPF+VS GYH++ELG+V N D Sbjct 4721 VNCSDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNMD 4780 Query 359 VNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKD 418 N+H RL+ KEL++YAADPAMH AS + L D RT CFSVAALT + FQTV+PGNFNKD Sbjct 4781 FNIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKD 4840 Query 419 FYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDK 478 FYDF VS+GFFKEGSSV LKHFFFAQDG+AAI+DY YY YNLPTM DI+Q+LF +EVVDK Sbjct 4841 FYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVDK 4900 Query 479 YFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPT 538 YFD YDGGC+NA++VIVNNLDKSAG PFNK+GKAR+YY+SMSY++QD LFA TKRNV+PT Sbjct 4901 YFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLPT 4960 Query 539 ITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGW 598 ITQMNLKYAISAKNRARTVAGVSI STMTNRQ+HQK+LKS+AATRGAT VIGT+KFYGGW Sbjct 4961 ITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW 5020 Query 599 HNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANE 658 MLKT+Y DVE+PHLMGWDYPKCDRAMPNM RI+ASL+LARKH+TCC+ S RFYRLANE Sbjct 5021 DFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANE 5080 Query 659 CAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADK 718 CAQVLSE V+CGG YVKPGGTSSGDATTAYANSVFNI QA TANV+AL+S +GN I D+ Sbjct 5081 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDR 5140 Query 719 YVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVAS 778 ++++Q LY +YR D FV+++YA+L KHFSMMILSDD VVC+NS YA++G VAS Sbjct 5141 EIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVAS 5200 Query 779 IKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRIL 838 I+NFK LYYQNNVFMSEAKCW ET+L KGPHEFCSQHT+ +K GDD +LPYPDPSRIL Sbjct 5201 IQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRIL 5260 Query 839 GAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGH 898 AGCFVDDIVKTDGT+M+ER+VSLAIDAYPLTKH + EY +VF +YLQYI KL+ +LTGH Sbjct 5261 SAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTGH 5320 Query 899 MLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 MLD YSVML D+++++WE FY +Y+ T LQ Sbjct 5321 MLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 5354 >sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus 133/2005 OX=389230 GN=rep PE=3 SV=1 Length=7126 Score = 1512 bits (3914), Expect = 0.0, Method: Composition-based stats. Identities = 660/934 (71%), Positives = 778/934 (83%), Gaps = 3/934 (0%) Query 2 ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDK--VAGFAKFLKTNCCRFQE 58 + +FLNRV G S ARL PC +G +TDVVYRAFDI N K VAG K+ KTN CRF + Sbjct 4428 SKDTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQ 4487 Query 59 KDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQR 118 D++ + +DSYF+VKRHT SNY+ E+ Y+LLKDC AVA HDFF F +D PHI RQ Sbjct 4488 VDDEGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQS 4547 Query 119 LTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANL 178 LT+YTM DLVYALRHFD+ NC+ LK ILV Y CC+ YF+ K W+DFVENP ++ VY L Sbjct 4548 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKL 4607 Query 179 GERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYY 238 GER+RQA+L TV+ CD M +G+VGVLTLDNQDLNG WYDFGDF+ T PG+GV +VDSYY Sbjct 4608 GERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 4667 Query 239 SLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNC 298 S LMP+L++T L AE+H D D KP I+W LL+YD+T+ ++ LF++YFK+WDQTYHPNC Sbjct 4668 SYLMPVLSMTNCLAAETHKDCDFNKPLIEWLLLEYDYTDYKIGLFNKYFKHWDQTYHPNC 4727 Query 299 VNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQD 358 VNC DDRCILHCANFNVLFS V P TSFGP+VRKIFVDGVPF+VS GYH++ELG+V N D Sbjct 4728 VNCGDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNMD 4787 Query 359 VNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKD 418 VN+H RL+ KEL++YAADPAMH AS + L D RT CFSVAALT + FQTV+PGNFNKD Sbjct 4788 VNIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKD 4847 Query 419 FYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDK 478 FYDF VS+GFFKEGSSV LKHFFFAQDG+AAI+DY YY YNLPTM DI+Q+LF +EVVDK Sbjct 4848 FYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVDK 4907 Query 479 YFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPT 538 YFD YDGGC+NA++VIVNNLDKSAG PFNK+GKAR+YY+SMSY++QD LFA TKRNV+PT Sbjct 4908 YFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLPT 4967 Query 539 ITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGW 598 ITQMNLKYAISAKNRARTVAGVSI STMTNRQ+HQK+LKS+AATRGAT VIGT+KFYGGW Sbjct 4968 ITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW 5027 Query 599 HNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANE 658 MLKT+Y DVE+PHLMGWDYPKCDRAMPNM RI+ASL+LARKH+TCC+ S RFYRLANE Sbjct 5028 DFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANE 5087 Query 659 CAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADK 718 CAQVLSE V+CGG YVKPGGTSSGDATTAYANSVFNI QA TANV+AL+S +GN I D+ Sbjct 5088 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDR 5147 Query 719 YVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVAS 778 ++++Q LY +YR D FV+++YA+L KHFSMMILSDD VVC+NS YA++G VAS Sbjct 5148 EIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVAS 5207 Query 779 IKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRIL 838 I+NFK LYYQNNVFMSEAKCW ET+L KGPHEFCSQHT+ +K GDD +LPYPDPSRIL Sbjct 5208 IQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRIL 5267 Query 839 GAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGH 898 AGCFVDDIVKTDGT+M+ER+VSLAIDAYPLTKH + EY +VF +YLQYI KL+ +LTGH Sbjct 5268 SAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTGH 5327 Query 899 MLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 MLD YSVML D+++++WE FY +Y+ T LQ Sbjct 5328 MLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 5361 >sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012) OX=1263720 GN=rep PE=1 SV=1 Length=7078 Score = 1505 bits (3896), Expect = 0.0, Method: Composition-based stats. Identities = 663/934 (71%), Positives = 771/934 (83%), Gaps = 4/934 (0%) Query 2 ADAQSFLNRVCGV-SAARLTPCGTGTSTDVVYRAFDIYN--DKVAGFAKFLKTNCCRFQE 58 + +FL RV G AR+ PC +G STDVV+RAFDI N KVAG K+ KTN CRF E Sbjct 4378 SKDSNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE 4437 Query 59 KDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQR 118 D+ + +DSYFVVKRHT NY+ E+ Y+LL+DC AVA HDFF F +D PHI RQR Sbjct 4438 LDDQGHHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQR 4497 Query 119 LTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANL 178 LT+YTM DLVYALRHFD+ N + LK ILV Y CCD YF K W+DFVENP ++ VY L Sbjct 4498 LTEYTMMDLVYALRHFDQ-NSEVLKAILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKL 4556 Query 179 GERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYY 238 GERVRQA+L TV+FCD M AG+VGVLTLDNQDLNG WYDFGDF+ T PGSGV +VDSYY Sbjct 4557 GERVRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYY 4616 Query 239 SLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNC 298 S LMP+L++T L AE+H D D KP I+W L +YDFT+ +++LF++YFKYWDQTYH NC Sbjct 4617 SYLMPVLSMTDCLAAETHRDCDFNKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHANC 4676 Query 299 VNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQD 358 VNC DDRC+LHCANFNVLF+ P T FGP+VRKIFVDGVPFVVS GYH++ELG+V N D Sbjct 4677 VNCTDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMNMD 4736 Query 359 VNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKD 418 V+LH RLS KEL++YAADPAMH AS N LD RT+CFSVAALT + FQTV+PGNFN+D Sbjct 4737 VSLHRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFNQD 4796 Query 419 FYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDK 478 FYDF VSKGFFKEGSSV LKHFFFAQDGNAAI+DY+YY YNLPTMCDI+Q+LF +EVV+K Sbjct 4797 FYDFVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVVNK 4856 Query 479 YFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPT 538 YF+ YDGGC+NA++V+VNNLDKSAG PFNK+GKAR+YY+SMSY++QD LFA TKRNVIPT Sbjct 4857 YFEIYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVIPT 4916 Query 539 ITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGW 598 +TQMNLKYAISAKNRARTVAGVSI STMTNRQ+HQK+LKS+AATRGAT VIGT+KFYGGW Sbjct 4917 MTQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW 4976 Query 599 HNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANE 658 MLKT+Y DV+NPHLMGWDYPKCDRAMPNM RI ASL+LARKH TCC+ RFYRLANE Sbjct 4977 DFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLANE 5036 Query 659 CAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADK 718 CAQVLSE V+CGG YVKPGGTSSGDATTAYANSVFNI QA TANV+AL+ +GNKI DK Sbjct 5037 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIVDK 5096 Query 719 YVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVAS 778 V+++Q LY +YR+ D FV+++YA+L KHFSMMILSDD VVC+NS YA++G +A Sbjct 5097 EVKDMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYIAG 5156 Query 779 IKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRIL 838 I+NFK LYYQNNVFMSEAKCW ETDL KGPHEFCSQHT+ +K GDD +LPYPDPSRIL Sbjct 5157 IQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRIL 5216 Query 839 GAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGH 898 AGCFVDDIVKTDGTLM+ERFVSLAIDAYPLTKH + EY +VF +YLQYI KL+ +LTGH Sbjct 5217 SAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLTGH 5276 Query 899 MLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 MLD YSVML DN++++WE FY +Y+ T LQ Sbjct 5277 MLDSYSVMLCGDNSAKFWEEAFYRDLYSSPTTLQ 5310 >sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavirus (strain A59) OX=11142 GN=rep PE=1 SV=1 Length=7176 Score = 1477 bits (3823), Expect = 0.0, Method: Composition-based stats. Identities = 617/932 (66%), Positives = 742/932 (80%), Gaps = 5/932 (1%) Query 2 ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 + +FLNR+ G S ARL PC +G TDV RAFDI N AG + K NCCRFQ D Sbjct 4455 SKDTNFLNRIRGTSVNARLVPCASGLDTDVQLRAFDICNANRAGIGLYYKVNCCRFQRVD 4514 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 ED N +D +FVVKR Y E+ Y L K+C VA+H+FF F ++G VPHI R+ L+ Sbjct 4515 EDGNKLDKFFVVKRTNLEVYNKEKECYELTKECGVVAEHEFFTFDVEGSRVPHIVRKDLS 4574 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 K+TM DL YALRHFD +C TLKEIL+TY C++ YF KKDWYDFVENPDI+ VY LG Sbjct 4575 KFTMLDLCYALRHFDRNDCSTLKEILLTYAECEESYFQKKDWYDFVENPDIINVYKKLGP 4634 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 +ALL T +F DA+ AG+VGVLTLDNQDL G WYDFGDF++T PG GV V DSYYS Sbjct 4635 IFNRALLNTAKFADALVEAGLVGVLTLDNQDLYGQWYDFGDFVKTVPGCGVAVADSYYSY 4694 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 +MP+LT+ AL +E V+ Y ++DL++YDFT+ +L+LF +YFK+W TYHPN Sbjct 4695 MMPMLTMCHALDSELFVN----GTYREFDLVQYDFTDFKLELFTKYFKHWSMTYHPNTCE 4750 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 C DDRCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+ Sbjct 4751 CEDDRCIIHCANFNILFSMVLPKTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNMDVD 4810 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 H RLS K+LL+YAADPA+H AS + LLD RT CFSVAA+T+ V FQTVKPGNFN+DFY Sbjct 4811 THRYRLSLKDLLLYAADPALHVASASALLDLRTCCFSVAAITSGVKFQTVKPGNFNQDFY 4870 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 +F +SKG KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV+KYF Sbjct 4871 EFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVNKYF 4930 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 + Y+GGCI A QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+T Sbjct 4931 EIYEGGCIPATQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLT 4990 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW + Sbjct 4991 QMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDD 5050 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 ML+ + DV++P LMGWDYPKCDRAMPN+LRI++SLVLARKH +CCS + RFYRLANECA Sbjct 5051 MLRRLIKDVDSPVLMGWDYPKCDRAMPNILRIVSSLVLARKHDSCCSHTDRFYRLANECA 5110 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSE+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAV+ANV +L++ +G+KI D + Sbjct 5111 QVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCSLMACNGHKIEDLSI 5170 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 R LQ RLY +YR VD FV+E+Y +L KHFSMMILSDD VVC+NS +AS+G +A+I Sbjct 5171 RELQKRLYSNVYRADHVDPAFVSEYYEFLNKHFSMMILSDDGVVCYNSEFASKGYIANIS 5230 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 F+ VLYYQNNVFMSEAKCW ETD+ KGPHEFCSQHTMLVK D VYLPYPDPSRILGA Sbjct 5231 AFQQVLYYQNNVFMSEAKCWVETDIEKGPHEFCSQHTMLVKMDGDEVYLPYPDPSRILGA 5290 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDD++KTD L+IERFVSLAIDAYPL H N EY +VF +YL+YI+KL+++L +L Sbjct 5291 GCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENPEYQNVFRVYLEYIKKLYNDLGNQIL 5350 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 D YSV+L+ + ++ + FY+ MY VLQ Sbjct 5351 DSYSVILSTCDGQKFTDETFYKNMYLRSAVLQ 5382 >sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavirus (strain 2) OX=76344 GN=rep PE=3 SV=1 Length=7124 Score = 1476 bits (3821), Expect = 0.0, Method: Composition-based stats. Identities = 618/932 (66%), Positives = 741/932 (80%), Gaps = 5/932 (1%) Query 2 ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 + +FLNRV G S ARL PC +G TDV RAFDI N AG + K NCCRFQ D Sbjct 4403 SKDTNFLNRVRGTSVNARLVPCASGLDTDVQLRAFDICNANRAGIGLYYKVNCCRFQRAD 4462 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 ED N +D +FV+KR Y E+ Y L K+C VA+H+FF F ++G VPHI R+ L+ Sbjct 4463 EDGNTLDKFFVIKRTNLEVYNKEKECYELTKECGVVAEHEFFTFDVEGSRVPHIVRKDLS 4522 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTM DL YALRHFD +C TLKEIL+TY CD+ YF KKDWYDFVEN DI+ VY LG Sbjct 4523 KYTMLDLCYALRHFDRNDCSTLKEILLTYAECDESYFQKKDWYDFVENSDIINVYKKLGP 4582 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 +ALL T +F D + AG+VGVLTLDNQDL G WYDFGDF++T PG GV V DSYYS Sbjct 4583 IFNRALLNTAKFADTLVEAGLVGVLTLDNQDLYGQWYDFGDFVKTVPGCGVAVADSYYSY 4642 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 +MP+LT+ AL +E ++ Y ++DL++YDFT+ +L+LF++YFKYW TYHPN Sbjct 4643 MMPMLTMCHALDSELFIN----GTYREFDLVQYDFTDFKLELFNKYFKYWSMTYHPNTCE 4698 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 C DDRCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+ Sbjct 4699 CEDDRCIIHCANFNILFSMVLPKTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNMDVD 4758 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 H RLS K+LL+YAADPA+H AS + LLD RT CFSVAA+T+ V FQTVKPGNFN+DFY Sbjct 4759 THRYRLSLKDLLLYAADPALHVASASALLDLRTCCFSVAAITSGVKFQTVKPGNFNQDFY 4818 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 +F +SKG KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV+KYF Sbjct 4819 EFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVNKYF 4878 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 + YDGGCI A QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+T Sbjct 4879 EIYDGGCIPATQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEVYAYTKRNVLPTLT 4938 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW + Sbjct 4939 QMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDD 4998 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 ML+ + DV++P LMGWDYPKCDRAMPN+LRI++SLVLARKH +CCS + RFYRLANECA Sbjct 4999 MLRRLIKDVDSPVLMGWDYPKCDRAMPNILRIISSLVLARKHDSCCSHTDRFYRLANECA 5058 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSE+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAV+ANV +L++ +G+KI D + Sbjct 5059 QVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCSLMACNGHKIEDLSI 5118 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 R LQ RLY +YR VD FVNE+Y +L KHFSMMILSDD VVC+NS +AS+G +A+I Sbjct 5119 RELQKRLYSNVYRADHVDPAFVNEYYEFLNKHFSMMILSDDGVVCYNSEFASKGYIANIS 5178 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 F+ VLYYQNNVFMSEAKCW ETD+ KGPHEFCSQHTMLVK D VYLPYPDPSRILGA Sbjct 5179 AFQQVLYYQNNVFMSEAKCWVETDIEKGPHEFCSQHTMLVKMDGDEVYLPYPDPSRILGA 5238 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDD++KTD L+IERFVSLAIDAYPL H N EY +VF +YL+YI+KL+++L +L Sbjct 5239 GCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENPEYQNVFRVYLEYIKKLYNDLGNQIL 5298 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 D YSV+L+ + ++ + FY+ MY V+Q Sbjct 5299 DSYSVILSTCDGQKFTDETFYKNMYLRSAVMQ 5330 >sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus HKU9 OX=694006 GN=rep PE=1 SV=1 Length=6930 Score = 1471 bits (3809), Expect = 0.0, Method: Composition-based stats. Identities = 676/932 (73%), Positives = 770/932 (83%), Gaps = 1/932 (0%) Query 2 ADAQSFLNRVCGVS-AARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 A + FLNRV G S ARL P G+G D+V RAFDI N KVAGF LK NCCR+QE D Sbjct 4234 ARDECFLNRVRGTSGVARLVPLGSGVQPDIVLRAFDICNTKVAGFGLHLKNNCCRYQELD 4293 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 D +DSYFVVKRHT SNY E+ Y LKDC VA+HDFFKF I+G M PH+SR+RLT Sbjct 4294 ADGTQLDSYFVVKRHTESNYLLEQRCYEKLKDCGVVARHDFFKFNIEGVMTPHVSRERLT 4353 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTMADLVY+LRHFD NCDTLKEILV CC DYF++KDWYD VENPDI+RVY NLGE Sbjct 4354 KYTMADLVYSLRHFDNNNCDTLKEILVLRGCCTADYFDRKDWYDPVENPDIIRVYHNLGE 4413 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 VR+A+L V+ D+M G++GVLTLDNQDLNG WYDFGDFI+ G+GV V+D+YYSL Sbjct 4414 TVRKAVLSAVKMADSMVEQGLIGVLTLDNQDLNGQWYDFGDFIEGPAGAGVAVMDTYYSL 4473 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 MP+ T+T L AE HVD D +KP WD+ KYD+T+ + LF +YFKYWD YHPNCV Sbjct 4474 AMPVYTMTNMLAAECHVDGDFSKPKRVWDICKYDYTQFKYSLFSKYFKYWDMQYHPNCVA 4533 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 C DDRCILHCANFN+LFS V P TSFGPLV+KI+VDGVPFVVSTGYH+RELGVV NQD+ Sbjct 4534 CADDRCILHCANFNILFSMVLPNTSFGPLVQKIYVDGVPFVVSTGYHYRELGVVMNQDIR 4593 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 H+ RLS +ELLVYAADPAMH A+ N L DKRT C SVAA+T V FQTVKPG FN+DFY Sbjct 4594 QHAQRLSLRELLVYAADPAMHVAASNALADKRTVCMSVAAMTTGVTFQTVKPGQFNEDFY 4653 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 +FAV GFFKEGS++ KHFF+AQDGNAAISDYDYYRYNLPTMCDI+QLLF +EVVDKYF Sbjct 4654 NFAVKCGFFKEGSTISFKHFFYAQDGNAAISDYDYYRYNLPTMCDIKQLLFSLEVVDKYF 4713 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 DCYDGGC+ A+QV+V N DKSAGFPFNK+GKARLYY+S+SY DQD LFAYTKRNV+PTIT Sbjct 4714 DCYDGGCLQASQVVVANYDKSAGFPFNKFGKARLYYESLSYADQDELFAYTKRNVLPTIT 4773 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSI STMTNRQFHQK+LKSIAA RGA+VVIGT+KFYGGW+ Sbjct 4774 QMNLKYAISAKNRARTVAGVSIASTMTNRQFHQKMLKSIAAARGASVVIGTTKFYGGWNR 4833 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 ML+T+ VENPHLMGWDYPKCDRAMPN+LRI ASL+LARKH TCC+ S RFYRLANECA Sbjct 4834 MLRTLCEGVENPHLMGWDYPKCDRAMPNLLRIFASLILARKHATCCNASERFYRLANECA 4893 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSEMV+CGG YVKPGGTSSGD+TTAYANSVFNICQAV+AN+N LS DGNKI YV Sbjct 4894 QVLSEMVLCGGGFYVKPGGTSSGDSTTAYANSVFNICQAVSANLNTFLSIDGNKIYTTYV 4953 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 + LQ RLY +YR+ VD + V ++Y YLRKHFSMMILSDD VVC+N+ YA +G VA I+ Sbjct 4954 QELQRRLYLGIYRSNTVDNELVLDYYNYLRKHFSMMILSDDGVVCYNADYAQKGYVADIQ 5013 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 FK +LY+QNNVFMSE+KCW E D+TKGPHEFCSQHTMLV + VYLPYPDPSRILGA Sbjct 5014 GFKELLYFQNNVFMSESKCWVEPDITKGPHEFCSQHTMLVDMKGEQVYLPYPDPSRILGA 5073 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDD++KTDGTLM+ER+VSLAIDAYPLTKHP+ EY +VF YLQYI+KLH+ELTGH+L Sbjct 5074 GCFVDDLLKTDGTLMMERYVSLAIDAYPLTKHPDPEYQNVFWCYLQYIKKLHEELTGHLL 5133 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 D YSVML +DN S+YWE EFYE MY LQ Sbjct 5134 DTYSVMLASDNASKYWEVEFYENMYMESATLQ 5165 >sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavirus (strain JHM) OX=11144 GN=rep PE=1 SV=1 Length=7180 Score = 1464 bits (3791), Expect = 0.0, Method: Composition-based stats. Identities = 613/932 (66%), Positives = 738/932 (79%), Gaps = 5/932 (1%) Query 2 ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 + +FLNRV G S ARL PC +G TDV RAFDI N AG + K NC RFQ D Sbjct 4461 SKDTNFLNRVRGTSVNARLVPCASGLDTDVQLRAFDICNANRAGIGLYYKVNCFRFQRVD 4520 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 E+ N +D +FVVKR Y E+ Y L KDC VA+H+FF F ++G VPHI R+ L+ Sbjct 4521 EEGNKLDKFFVVKRTNLEVYNKEKECYELTKDCGVVAEHEFFTFDVEGSRVPHIVRKDLS 4580 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 K+TM DL YALRHFD +C TLKEIL+TY CD+ YF KKDWYDFVENPDI+ VY LG Sbjct 4581 KFTMLDLCYALRHFDRNDCSTLKEILLTYAECDESYFQKKDWYDFVENPDIINVYKKLGP 4640 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 +ALL T F D + AG+VGVLTLDNQDL G WYDFGDF++T P GV V DSYYS Sbjct 4641 IFNRALLNTANFADTLVEAGLVGVLTLDNQDLYGQWYDFGDFVKTVPCCGVAVADSYYSY 4700 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 +MP+LT+ AL +E V+ Y ++DL++YDFT+ +L+LF++YFK+W TYHPN Sbjct 4701 MMPMLTMCHALDSELFVN----GTYREFDLVQYDFTDFKLELFNKYFKHWSMTYHPNTSE 4756 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 C DDRCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+ Sbjct 4757 CEDDRCIIHCANFNILFSMVLPKTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNMDVD 4816 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 H RLS K+LL+YAADPA+H AS + LLD RT CFSVAA+T+ V FQTVKPGNFN+DFY Sbjct 4817 THRYRLSLKDLLLYAADPALHVASASALLDLRTCCFSVAAITSGVKFQTVKPGNFNQDFY 4876 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 +F +SKG KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFVVEVV+KYF Sbjct 4877 EFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVVEVVNKYF 4936 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 + Y+GGCI A QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+T Sbjct 4937 EIYEGGCIPATQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLT 4996 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW + Sbjct 4997 QMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDD 5056 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 ML+ + DV++P LMGWDYPKCDRAMPN+LRI++SLVLARKH +CCS + RFYRLANECA Sbjct 5057 MLRRLIKDVDSPVLMGWDYPKCDRAMPNILRIVSSLVLARKHDSCCSHTDRFYRLANECA 5116 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVL E+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAV+ANV +L++ +G+KI D + Sbjct 5117 QVLGEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCSLMACNGHKIEDLSI 5176 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 R LQ RLY +YR VD FV+E+Y +L KHFSM+ILSDD VVC+NS +AS+G +A+I Sbjct 5177 RELQKRLYSNVYRADHVDPAFVSEYYEFLNKHFSMIILSDDGVVCYNSEFASKGYIANIS 5236 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 +F+ VLYYQNNVFMSEAKCW ETD+ KGPHEFCSQHTMLVK D VYLPYPDPSRILGA Sbjct 5237 DFQQVLYYQNNVFMSEAKCWVETDIEKGPHEFCSQHTMLVKMDGDEVYLPYPDPSRILGA 5296 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDD++KTD L+IERFVSLAIDAYPL H N EY +VF +YL+YI+KL+++L +L Sbjct 5297 GCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENPEYQNVFRVYLEYIKKLYNDLGNQIL 5356 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 D SV+L+ + ++ + FY+ MY V+Q Sbjct 5357 DSISVILSTCDGQKFTDETFYKNMYLRSAVMQ 5388 >sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavirus (strain 98TXSF-110-LUN) OX=233264 GN=rep PE=3 SV=1 Length=7094 Score = 1459 bits (3778), Expect = 0.0, Method: Composition-based stats. Identities = 613/932 (66%), Positives = 733/932 (79%), Gaps = 5/932 (1%) Query 2 ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 + +FLNRV G S ARL PC +G STDV RAFDI N VAG LK NCCRFQ D Sbjct 4370 SKDTNFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICNASVAGIGLHLKVNCCRFQRVD 4429 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 E+ + +D +FVVKR + Y E Y +KDC VA+HDFF F ++G VPHI R+ LT Sbjct 4430 ENGDKLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLT 4489 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTM DL YALRHFD +C L +IL Y C+ YF KKDWYDFVENPDI+ VY LG Sbjct 4490 KYTMLDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGP 4549 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 +AL+ +F D + G+VG+LTLDNQDLNG WYDFGD++ PG GV + DSYYS Sbjct 4550 IFNRALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSY 4609 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 +MP+LT+ AL E +V+ Y +DL++YDFT+ +L+LF++YFK+W YHPN V+ Sbjct 4610 MMPMLTMCHALDCELYVN----NAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTVD 4665 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 C DDRCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELG+V N DV+ Sbjct 4666 CQDDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDVD 4725 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 H RLS K+LL+YAADPA+H AS + L D RT CFSVAA+T+ V FQTVKPGNFN+DFY Sbjct 4726 THRYRLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFY 4785 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 DF +SKG KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF Sbjct 4786 DFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYF 4845 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 + YDGGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+T Sbjct 4846 EIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLT 4905 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW + Sbjct 4906 QMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDD 4965 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 ML+ + DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH CCS S RFYRLANECA Sbjct 4966 MLRRLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANECA 5025 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSE+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAV+ANV AL+S +GNKI D + Sbjct 5026 QVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLSI 5085 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 R LQ RLY +YR+ VD+ FV E+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I Sbjct 5086 RALQKRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANIS 5145 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 F+ VLYYQNNVFMSE+KCW E D+ GPHEFCSQHTMLVK D VYLPYPDPSRILGA Sbjct 5146 AFQQVLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVYLPYPDPSRILGA 5205 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDD++KTD L+IERFVSLAIDAYPL H N+EY VF +YL+YI+KL+++L +L Sbjct 5206 GCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNDLGNQIL 5265 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 D YSV+L+ + ++ + FY+ MY V+Q Sbjct 5266 DSYSVILSTCDGQKFTDESFYKNMYLRSAVMQ 5297 >sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavirus (strain 98TXSF-110-ENT) OX=233262 GN=rep PE=3 SV=1 Length=7094 Score = 1459 bits (3778), Expect = 0.0, Method: Composition-based stats. Identities = 613/932 (66%), Positives = 733/932 (79%), Gaps = 5/932 (1%) Query 2 ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 + +FLNRV G S ARL PC +G STDV RAFDI N VAG LK NCCRFQ D Sbjct 4370 SKDTNFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICNASVAGIGLHLKVNCCRFQRVD 4429 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 E+ + +D +FVVKR + Y E Y +KDC VA+HDFF F ++G VPHI R+ LT Sbjct 4430 ENGDKLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLT 4489 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTM DL YALRHFD +C L +IL Y C+ YF KKDWYDFVENPDI+ VY LG Sbjct 4490 KYTMLDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGP 4549 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 +AL+ +F D + G+VG+LTLDNQDLNG WYDFGD++ PG GV + DSYYS Sbjct 4550 IFNRALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSY 4609 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 +MP+LT+ AL E +V+ Y +DL++YDFT+ +L+LF++YFK+W YHPN V+ Sbjct 4610 MMPMLTMCHALDCELYVN----NAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTVD 4665 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 C DDRCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELG+V N DV+ Sbjct 4666 CQDDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDVD 4725 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 H RLS K+LL+YAADPA+H AS + L D RT CFSVAA+T+ V FQTVKPGNFN+DFY Sbjct 4726 THRYRLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFY 4785 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 DF +SKG KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF Sbjct 4786 DFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYF 4845 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 + YDGGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+T Sbjct 4846 EIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLT 4905 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW + Sbjct 4906 QMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDD 4965 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 ML+ + DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH CCS S RFYRLANECA Sbjct 4966 MLRRLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANECA 5025 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSE+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAV+ANV AL+S +GNKI D + Sbjct 5026 QVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLSI 5085 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 R LQ RLY +YR+ VD+ FV E+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I Sbjct 5086 RALQKRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANIS 5145 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 F+ VLYYQNNVFMSE+KCW E D+ GPHEFCSQHTMLVK D VYLPYPDPSRILGA Sbjct 5146 AFQQVLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVYLPYPDPSRILGA 5205 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDD++KTD L+IERFVSLAIDAYPL H N+EY VF +YL+YI+KL+++L +L Sbjct 5206 GCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNDLGNQIL 5265 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 D YSV+L+ + ++ + FY+ MY V+Q Sbjct 5266 DSYSVILSTCDGQKFTDESFYKNMYLRSAVMQ 5297 >sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus 512/2005 OX=693999 GN=rep PE=3 SV=1 Length=6793 Score = 1459 bits (3778), Expect = 0.0, Method: Composition-based stats. Identities = 560/930 (60%), Positives = 706/930 (76%), Gaps = 6/930 (1%) Query 4 AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDD 63 +LNRV G SAARL P G+ T V+RAFD+YN VA +KFLK NC R + D+ Sbjct 4114 DSGYLNRVRGSSAARLEPL-NGSDTHHVFRAFDVYNRDVACISKFLKVNCVRLKNLDKH- 4171 Query 64 NLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYT 123 D++++VK+ T S +HE++IYNL+ DC AVAKHDFF ++ + ++ RQ LT+YT Sbjct 4172 ---DAFWIVKKCTKSVMEHEQSIYNLISDCGAVAKHDFFTWKEGRSVYGNVCRQDLTEYT 4228 Query 124 MADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVR 183 M DL YALR+FDE NC+TLK+ILV CD+ YF+ K W+D VEN D+ RVYA LG V Sbjct 4229 MMDLCYALRNFDENNCETLKKILVVVGACDESYFDNKLWFDPVENEDVHRVYAKLGTIVA 4288 Query 184 QALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMP 243 +A+LK V++CDAM GIVGV+TLDNQDLNG++YDFGDF+ + G GVP+ SYYS +MP Sbjct 4289 RAMLKCVKYCDAMVEQGIVGVITLDNQDLNGDFYDFGDFVTSVKGMGVPICTSYYSYMMP 4348 Query 244 ILTLTRALTAESHVDTD-LTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCL 302 ++ +T L +E + +D + + +DLL YDFTE ++ LF++YFK+W QTYHPNC +C Sbjct 4349 VMGMTNCLASECFIKSDIFGEDFRTFDLLAYDFTEHKVNLFNKYFKHWGQTYHPNCEDCH 4408 Query 303 DDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLH 362 D+ CI+HCANFN LF+T P T+FGPL RK ++DGVP V + GYHF++LG+V N+D+NLH Sbjct 4409 DESCIVHCANFNTLFATTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNKDLNLH 4468 Query 363 SSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDF 422 SSRL+ ELL + ADP++ AS L+DKRT CFSVAAL + QTVKPG+FN++FYDF Sbjct 4469 SSRLTINELLQFCADPSLLIASSPALVDKRTVCFSVAALGTGMTNQTVKPGHFNREFYDF 4528 Query 423 AVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDC 482 S+GFF+EGS + LKHFFFAQ G+AA+ D+DYYRYN T+ DI Q V ++V YF Sbjct 4529 LRSQGFFEEGSELTLKHFFFAQKGDAAVRDFDYYRYNRTTVLDICQARVVYQIVQCYFGM 4588 Query 483 YDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQM 542 Y+GGCI A +VIVNNL+KSAG+PFNK+GKA LYYDS+SYE+QD L+AYTKRN+IPT+TQ+ Sbjct 4589 YEGGCITAKEVIVNNLNKSAGYPFNKFGKAGLYYDSLSYEEQDDLYAYTKRNIIPTMTQL 4648 Query 543 NLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML 602 NLKYAIS K+RARTV GVS+ STMT RQ+HQK LKSI TRGA+VVIGT+KFYGGW NML Sbjct 4649 NLKYAISGKDRARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWDNML 4708 Query 603 KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQV 662 KT+ DVENPHLMGWDYPKCDRA+PNM+R++++++L KH CCS S R+YRL NE AQV Sbjct 4709 KTLIKDVENPHLMGWDYPKCDRALPNMIRMISAMILGSKHVNCCSSSDRYYRLCNELAQV 4768 Query 663 LSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRN 722 L+EMV G YVKPGGT+SGDATTAYANSVFNI QA +ANVN LLS D N + V+ Sbjct 4769 LTEMVYSNGGFYVKPGGTTSGDATTAYANSVFNIFQATSANVNRLLSVDSNTCNNIEVKQ 4828 Query 723 LQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNF 782 LQ +LY+C YR+ VD FV E++ YLRKHFSMMILSDD VVC+NS YA+ G VA + F Sbjct 4829 LQRKLYDCCYRSSSVDQSFVEEYFGYLRKHFSMMILSDDGVVCYNSEYAALGYVADLNAF 4888 Query 783 KSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGC 842 K+VLYYQNNVFMS +KCW E D+ KGPHEFCSQHTM + D YLPYPDPSRIL AG Sbjct 4889 KAVLYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKDGTYYLPYPDPSRILSAGV 4948 Query 843 FVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDM 902 FVDDIVKTD +++ER+VSLAIDAYPL+KH N EY VF + L +++ L+ L +LD Sbjct 4949 FVDDIVKTDPVILLERYVSLAIDAYPLSKHDNPEYRRVFTVMLDWVKHLYKTLNQGVLDS 5008 Query 903 YSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 +SV L D T+++W+ FY +MY +VLQ Sbjct 5009 FSVTLLEDATAKFWDESFYASMYEQSSVLQ 5038 >sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavirus (strain Quebec) OX=11133 GN=rep PE=3 SV=1 Length=7059 Score = 1457 bits (3771), Expect = 0.0, Method: Composition-based stats. Identities = 613/932 (66%), Positives = 731/932 (78%), Gaps = 5/932 (1%) Query 2 ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 + +FLNRV G S ARL PC +G STDV RAFDI N VAG LK NCCRFQ D Sbjct 4370 SKDTNFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICNASVAGIGLHLKVNCCRFQRVD 4429 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 E+ + +D +FVVKR + Y E Y +KDC VA+HDFF F ++G VPHI R+ LT Sbjct 4430 ENGDKLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLT 4489 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTM DL YALRHFD +C L +IL Y C+ YF KKDWYDFVENPDI+ VY LG Sbjct 4490 KYTMLDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGP 4549 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 +AL+ +F D + G+VG+LTLDNQDLNG WYDFGD++ PG GV + DSYYS Sbjct 4550 IFNRALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSY 4609 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 +MP+LT+ AL E +V+ Y +DL++YDFT+ +L+LF++YFK+W YHPN V+ Sbjct 4610 MMPMLTMCHALDCELYVN----NAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTVD 4665 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 C DDRCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELG+V N DV+ Sbjct 4666 CQDDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDVD 4725 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 H RLS K+LL+YAADPA+H AS + L D RT CFSVAA+T+ V FQTVKPGNFN+DFY Sbjct 4726 THRYRLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFY 4785 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 DF +SKG KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF Sbjct 4786 DFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYF 4845 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 + YDGGCI A QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+T Sbjct 4846 EIYDGGCIPAAQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLT 4905 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW + Sbjct 4906 QMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDD 4965 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 ML+ + DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH CCS S RFYRLANECA Sbjct 4966 MLRRLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANECA 5025 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSE+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAV+ANV AL+S +GNKI D + Sbjct 5026 QVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLSI 5085 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 R LQ RLY +YR+ VD+ FV E+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I Sbjct 5086 RALQKRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANIS 5145 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 F+ VLYYQNNVFMSE+KCW E D+ GPHEFCSQHTMLVK D VYLPYP PSRILGA Sbjct 5146 AFQQVLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVYLPYPVPSRILGA 5205 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDD++KTD L+IERFVSLAIDAYPL H N+EY VF +YL+YI+KL++EL +L Sbjct 5206 GCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNELGNQIL 5265 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 D YSV+L+ + ++ + FY+ MY V+Q Sbjct 5266 DSYSVILSTCDGQKFTDESFYKNMYLRSAVMQ 5297 >sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavirus OC43 OX=31631 GN=rep PE=1 SV=1 Length=7095 Score = 1455 bits (3766), Expect = 0.0, Method: Composition-based stats. Identities = 615/932 (66%), Positives = 734/932 (79%), Gaps = 5/932 (1%) Query 2 ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 + +FLNRV G S ARL PC +G STDV RAFDIYN VAG LK NCCRFQ D Sbjct 4370 SKDTNFLNRVRGASVDARLVPCASGLSTDVQLRAFDIYNASVAGIGLHLKVNCCRFQRVD 4429 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 E+ + +D +FVVKR + Y E Y +KDC VA+HDFF F ++G VPHI R+ LT Sbjct 4430 ENGDKLDQFFVVKRTDLTIYNREMKCYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLT 4489 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTM DL YALRHFD +C L +IL Y C+ YF KKDWYDFVENPDI+ VY LG Sbjct 4490 KYTMLDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGP 4549 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 +AL+ +F D + G+VGVLTLDNQDLNG WYDFGD++ PG GV + DSYYS Sbjct 4550 IFNRALVSATEFADKLVEVGLVGVLTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSY 4609 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 +MP+LT+ AL E +V+ Y +DL++YDFT+ +L+LF++YFK+W YHPN V+ Sbjct 4610 IMPMLTMCHALDCELYVN----NAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTVD 4665 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 C DDRCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELG+V N DV+ Sbjct 4666 CQDDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDVD 4725 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 H RLS K+LL+YAADPA+H AS + L D RT CFSVAA+T+ V FQTVKPGNFN+DFY Sbjct 4726 THRYRLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFY 4785 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 DF +SKG KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF Sbjct 4786 DFVLSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYF 4845 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 + YDGGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+T Sbjct 4846 EIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLT 4905 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW + Sbjct 4906 QMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDD 4965 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 ML+ + DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH TCCS S RFYRLANECA Sbjct 4966 MLRRLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHETCCSQSDRFYRLANECA 5025 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSE+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAV+ANV AL+S +GNKI D + Sbjct 5026 QVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLSI 5085 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 R LQ RLY +YR+ VD+ FV E+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I Sbjct 5086 RALQKRLYSHVYRSDKVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANIS 5145 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 F+ VLYYQNNVFMSE+KCW E D+ GPHEFCSQHTMLVK D VYLPYP+PSRILGA Sbjct 5146 AFQQVLYYQNNVFMSESKCWVEHDINNGPHEFCSQHTMLVKMDGDDVYLPYPNPSRILGA 5205 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDD++KTD L+IERFVSLAIDAYPL H N+EY VF +YL YI+KL+++L +L Sbjct 5206 GCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLAYIKKLYNDLGNQIL 5265 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 D YSV+L+ + ++ + FY+ MY V+Q Sbjct 5266 DSYSVILSTCDGQKFTDESFYKNMYLRSAVMQ 5297 >sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemic diarrhea virus (strain CV777) OX=229032 GN=rep PE=1 SV=1 Length=6781 Score = 1452 bits (3760), Expect = 0.0, Method: Composition-based stats. Identities = 556/932 (60%), Positives = 701/932 (75%), Gaps = 6/932 (1%) Query 2 ADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDE 61 + ++LNRV G SAARL PC GT T VYRAFDIYN VA KFLK NC R + D+ Sbjct 4101 STDMAYLNRVRGSSAARLEPC-NGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLKNLDK 4159 Query 62 DDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTK 121 D+++VVKR T S +HE++IY+ L+ C A+A+HDFF ++ + ++ R+ LT+ Sbjct 4160 H----DAFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKDLTE 4215 Query 122 YTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGER 181 YTM DL YALR+FDE NCD LK IL+ C++ YFN K W+D VEN DI RVYA LG Sbjct 4216 YTMMDLCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALLGTI 4275 Query 182 VRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLL 241 V +A+LK V+FCDAM GIVGV+TLDNQDLNG++YDFGDF + G GVP+ SYYS + Sbjct 4276 VARAMLKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICTSYYSYM 4335 Query 242 MPILTLTRALTAESHVDTD-LTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 MP++ +T L +E V +D + + +DLL+YDFTE + LF++YFKYW YHPNCV+ Sbjct 4336 MPVMGMTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPNCVD 4395 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 C D++CI+HCANFN LFST P T+FGPL RK ++DGVP V + GYHF++LG+V N D+N Sbjct 4396 CSDEQCIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNNDLN 4455 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 LHSSRLS ELL + +DPA+ AS L+D+RT CFSVAAL + QTVKPG+FNK+FY Sbjct 4456 LHSSRLSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGHFNKEFY 4515 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 DF + +GFF EGS + LKHFFFAQ +AA+ D+DYYRYN PT+ DI Q V ++V +YF Sbjct 4516 DFLLEQGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQIVQRYF 4575 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 D Y+GGCI A +V+V NL+KSAG+P NK+GKA LYY+S+SYE+QD L+AYTKRN++PT+T Sbjct 4576 DIYEGGCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTMT 4635 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 Q+NLKYAIS K RARTV GVS+ STMT RQ+HQK LKSI TRGA+VVIGT+KFYGGW N Sbjct 4636 QLNLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWDN 4695 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 MLK + VENP LMGWDYPKCDRA+PNM+R++++++L KHTTCCS + RF+RL NE A Sbjct 4696 MLKNLIDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNELA 4755 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVL+E+V G Y+KPGGT+SGDATTAYANSVFNI QAV+ANVN LLS D N + V Sbjct 4756 QVLTEVVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHNLEV 4815 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 + LQ +LYEC YR+ VD FV E+Y YLRKHFSMMILSDD VVC+N+ YAS G VA + Sbjct 4816 KQLQRKLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVADLN 4875 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 FK+VLYYQNNVFMS +KCW E D+ KGPHEFCSQHTM + + YLPYPDPSRIL A Sbjct 4876 AFKAVLYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKEGTYYLPYPDPSRILSA 4935 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 G FVDD+VKTD +++ER+VSLAIDAYPL+KH N EY VF++ L +++ L+ L +L Sbjct 4936 GVFVDDVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNAGVL 4995 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 + +SV L D+T+++W+ FY MY VLQ Sbjct 4996 ESFSVTLLEDSTAKFWDESFYANMYEKSAVLQ 5027 >sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavirus (strain Mebus) OX=11132 GN=rep PE=3 SV=1 Length=7094 Score = 1451 bits (3756), Expect = 0.0, Method: Composition-based stats. Identities = 612/932 (66%), Positives = 731/932 (78%), Gaps = 5/932 (1%) Query 2 ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 + +FLNRV G S ARL PC +G STDV RAFDI N VAG LK NCCRFQ D Sbjct 4370 SKDTNFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICNASVAGIGLHLKVNCCRFQRVD 4429 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 E+ + +D +FVVKR + Y E Y +KDC VA+HDFF F ++G VPHI R+ LT Sbjct 4430 ENGDKLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLT 4489 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTM DL YALRHFD +C L +IL Y C+ YF KKDWYDFVENPDI+ VY LG Sbjct 4490 KYTMLDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGP 4549 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 +AL+ +F D + G+VG+LTLDNQDLNG WYDFGD++ PG GV + DSYYS Sbjct 4550 IFNRALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSY 4609 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 +MP+LT+ AL E +V+ Y +DL++YDFT+ +L+LF++YFK+W YHPN V+ Sbjct 4610 MMPMLTMCHALDCELYVN----NAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTVD 4665 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 C DDRCI+ CANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELG+V N DV+ Sbjct 4666 CQDDRCIIRCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDVD 4725 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 H RLS K+LL+YAADPA+H AS + L D RT CFSVAA+T+ V FQTVKPGNFN+DFY Sbjct 4726 THRYRLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFY 4785 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 DF +SKG KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF Sbjct 4786 DFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYF 4845 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 + YDGGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+T Sbjct 4846 EIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLT 4905 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW + Sbjct 4906 QMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDD 4965 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 ML+ + DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH CCS S RFYRLANE A Sbjct 4966 MLRRLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANEYA 5025 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSE+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAV+ANV AL+S +GNKI D + Sbjct 5026 QVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLSI 5085 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 R LQ RLY +YR+ VD+ FV E+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I Sbjct 5086 RALQKRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANIS 5145 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 F+ VLYYQNNVFMSE+KCW E D+ GPHEFCSQHTMLVK D VYLPYPDPSRILGA Sbjct 5146 AFQQVLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVYLPYPDPSRILGA 5205 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDD++KTD L+IERFVSLAIDAYPL H N+EY VF +YL+YI+KL++EL +L Sbjct 5206 GCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNELGNQIL 5265 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 D YSV+L+ + ++ + FY+ MY V+Q Sbjct 5266 DSYSVILSTCDGQKFTDESFYKNMYLRSAVMQ 5297 >sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N5) OX=443241 GN=rep PE=3 SV=1 Length=7132 Score = 1451 bits (3755), Expect = 0.0, Method: Composition-based stats. Identities = 622/932 (67%), Positives = 736/932 (79%), Gaps = 5/932 (1%) Query 2 ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 + +FLNRV G S ARL PC +G STDV RAFDI N AG + K NCCRFQ D Sbjct 4408 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRID 4467 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 +D N +D +FVVKR Y E+T Y L K C VA+HDFF F IDG VPHI R+ L+ Sbjct 4468 DDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRRNLS 4527 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTM DL YALRHFD +C L EIL Y C + YF+KKDWYDFVENPDI+ +Y LG Sbjct 4528 KYTMLDLCYALRHFDRNDCSILCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGP 4587 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 +ALL TV F D + G+VGVLTLDNQDL G WYDFGDFIQT PG GV V DSYYS Sbjct 4588 IFNRALLNTVIFADTLVEVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSY 4647 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 +MP+LT+ L E V+ Y ++DL++YDFT+ +L+LF++YFKYW YHPN V+ Sbjct 4648 MMPMLTMCHVLDCELFVN----DSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVD 4703 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 C +DRCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+ Sbjct 4704 CDNDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVD 4763 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 H RLS K+LL+YAADPAMH AS + LLD RT CFSVAA+T+ + FQTVKPGNFN+DFY Sbjct 4764 THRYRLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFY 4823 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 +F SKG FKEGS+V+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF Sbjct 4824 EFVKSKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYF 4883 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 + YDGGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+Q+ ++AYTKRNV+PT+T Sbjct 4884 EIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLT 4943 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW + Sbjct 4944 QMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDD 5003 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 ML+ + DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH CCS RFYRLANECA Sbjct 5004 MLRHLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECA 5063 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSE+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAVTANV +L++ +G+KI D + Sbjct 5064 QVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSI 5123 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 RNLQ RLY +YR VD FVNE+Y +L KHFSMMILSDD VVC+NS YA++G +A+I Sbjct 5124 RNLQKRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYANKGYIANIS 5183 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 F+ VLYYQNNVFMSE+KCW E D+T GPHEFCSQHTMLVK DYVYLPYPDPSRILGA Sbjct 5184 AFQQVLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGA 5243 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDD++KTD L+IERFVSLAIDAYPL H N+EY VF +YL+YI+KL+++L +L Sbjct 5244 GCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNDLGTQIL 5303 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 D YSV+L+ + ++ E FY+ MY V+Q Sbjct 5304 DSYSVILSTCDGLKFTEESFYKNMYLKSAVMQ 5335 >sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N1) OX=443239 GN=rep PE=3 SV=1 Length=7182 Score = 1451 bits (3755), Expect = 0.0, Method: Composition-based stats. Identities = 623/932 (67%), Positives = 736/932 (79%), Gaps = 5/932 (1%) Query 2 ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 + +FLNRV G S ARL PC +G STDV RAFDI N AG + K NCCRFQ D Sbjct 4458 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRID 4517 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 +D N +D +FVVKR Y E+T Y L K C VA+HDFF F IDG VPHI R+ L+ Sbjct 4518 DDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRRNLS 4577 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTM DL YALRHFD +C L EIL Y C + YF+KKDWYDFVENPDI+ +Y LG Sbjct 4578 KYTMLDLCYALRHFDRNDCSILCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGP 4637 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 +ALL TV F D + G+VGVLTLDNQDL G WYDFGDFIQT PG GV V DSYYS Sbjct 4638 IFNRALLNTVIFADTLVEVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSY 4697 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 +MP+LT+ L E V+ Y ++DL++YDFT+ +L+LF++YFKYW YHPN V+ Sbjct 4698 MMPMLTMCHVLDCELFVN----DSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVD 4753 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 C +DRCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+ Sbjct 4754 CDNDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVD 4813 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 H RLS K+LL+YAADPAMH AS + LLD RT CFSVAA+T+ + FQTVKPGNFN+DFY Sbjct 4814 THRYRLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFY 4873 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 +F SKG FKEGS+V+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF Sbjct 4874 EFVKSKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYF 4933 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 + YDGGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+Q+ ++AYTKRNV+PT+T Sbjct 4934 EIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLT 4993 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW + Sbjct 4994 QMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDD 5053 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 ML+ + DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH CCS RFYRLANECA Sbjct 5054 MLRHLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECA 5113 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSE+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAVTANV +L++ +G+KI D + Sbjct 5114 QVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSI 5173 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 RNLQ RLY +YR VD FVNE+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I Sbjct 5174 RNLQKRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANIS 5233 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 F+ VLYYQNNVFMSE+KCW E D+T GPHEFCSQHTMLVK DYVYLPYPDPSRILGA Sbjct 5234 VFQQVLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGA 5293 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDD++KTD L+IERFVSLAIDAYPL H N+EY VF +YL+YI+KL+++L +L Sbjct 5294 GCFVDDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGTQIL 5353 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 D YSV+L+ + ++ E FY+ MY V+Q Sbjct 5354 DSYSVILSTCDGLKFTEESFYKNMYLKSAVMQ 5385 >sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N2) OX=443240 GN=rep PE=3 SV=1 Length=7152 Score = 1449 bits (3750), Expect = 0.0, Method: Composition-based stats. Identities = 622/932 (67%), Positives = 736/932 (79%), Gaps = 5/932 (1%) Query 2 ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 + +FLNRV G S ARL PC +G STDV RAFDI N AG + K NCCRFQ D Sbjct 4428 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRID 4487 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 +D N +D +FVVKR Y E+T Y L K C VA+HDFF F IDG VPHI R+ L+ Sbjct 4488 DDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKNLS 4547 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTM DL YALRHFD +C L EIL Y C + YF+KKDWYDFVENPDI+ +Y LG Sbjct 4548 KYTMLDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGP 4607 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 +ALL TV F D + G+VGVLTLDNQDL G WYDFGDFIQT PG GV V DSYYS Sbjct 4608 IFNRALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSY 4667 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 +MP+LT+ L E V+ Y ++DL++YDFT+ +L+LF++YFKYW YHPN V+ Sbjct 4668 MMPMLTMCHVLDCELFVN----DSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVD 4723 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 C +DRCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+ Sbjct 4724 CDNDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVD 4783 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 H RLS K+LL+YAADPAMH AS + LLD RT CFSVAA+T+ + FQTVKPGNFN+DFY Sbjct 4784 THRYRLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFY 4843 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 +F SKG FKEGS+V+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF Sbjct 4844 EFVKSKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYF 4903 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 + YDGGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+Q+ ++AYTKRNV+PT+T Sbjct 4904 EIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLT 4963 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW + Sbjct 4964 QMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDD 5023 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 ML+ + DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH CCS RFYRLANECA Sbjct 5024 MLRHLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECA 5083 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSE+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAVTANV +L++ +G+KI D + Sbjct 5084 QVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSI 5143 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 RNLQ RLY +YR VD FVNE+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I Sbjct 5144 RNLQKRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANIS 5203 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 F+ VLYYQNNVFMSE+KCW E D+T GPHEFCSQHTMLVK DYVYLPYPDPSRILGA Sbjct 5204 VFQQVLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGA 5263 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDD++KTD L+IERFVSLAIDAYPL H N+EY VF +YL+YI+KL+++L +L Sbjct 5264 GCFVDDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGNQIL 5323 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 D YSV+L+ + ++ + FY+ MY V+Q Sbjct 5324 DSYSVILSTCDGLKFTDESFYKNMYLKSAVMQ 5355 >sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavirus 229E OX=11137 GN=rep PE=1 SV=1 Length=6758 Score = 1436 bits (3717), Expect = 0.0, Method: Composition-based stats. Identities = 546/930 (59%), Positives = 696/930 (75%), Gaps = 6/930 (1%) Query 4 AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDD 63 S+LNRV G SAARL PC GT D RAFD+YN + K LK+NC RF+ D+D Sbjct 4071 DNSYLNRVRGSSAARLEPC-NGTDIDYCVRAFDVYNKDASFIGKNLKSNCVRFKNVDKD- 4128 Query 64 NLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYT 123 D++++VKR S HE+++YNLLK C AVAKHDFF + + ++SRQ LTKYT Sbjct 4129 ---DAFYIVKRCIKSVMDHEQSMYNLLKGCNAVAKHDFFTWHEGRTIYGNVSRQDLTKYT 4185 Query 124 MADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVR 183 M DL +ALR+FDE +C+ KEILV CC DYF K+W+D +EN DI RVYA LG+ V Sbjct 4186 MMDLCFALRNFDEKDCEVFKEILVLTGCCSTDYFEMKNWFDPIENEDIHRVYAALGKVVA 4245 Query 184 QALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMP 243 A+LK V FCD M G+VGVLTLDNQDLNGN+YDFGDF+ PG G+P SYYS +MP Sbjct 4246 NAMLKCVAFCDEMVLKGVVGVLTLDNQDLNGNFYDFGDFVLCPPGMGIPYCTSYYSYMMP 4305 Query 244 ILTLTRALTAESHVDTD-LTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCL 302 ++ +T L +E + +D + + +DLLKYDFTE + LF++YFKYW Q YHP+CV+C Sbjct 4306 VMGMTNCLASECFMKSDIFGQDFKTFDLLKYDFTEHKEVLFNKYFKYWGQDYHPDCVDCH 4365 Query 303 DDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLH 362 D+ CILHC+NFN LF+T P T+FGPL RK+F+DGVP V + GYHF++LG+V N+DVN H Sbjct 4366 DEMCILHCSNFNTLFATTIPNTAFGPLCRKVFIDGVPVVATAGYHFKQLGLVWNKDVNTH 4425 Query 363 SSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDF 422 S+RL+ ELL + DP + AS L+DKRT CFSVAAL+ + QTVKPG+FNK+FYDF Sbjct 4426 STRLTITELLQFVTDPTLIVASSPALVDKRTVCFSVAALSTGLTSQTVKPGHFNKEFYDF 4485 Query 423 AVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDC 482 S+GFF EGS + LKHFFF Q G+AAI D+DYYRYN PTM DI Q +V +YFDC Sbjct 4486 LRSQGFFDEGSELTLKHFFFTQKGDAAIKDFDYYRYNRPTMLDIGQARVAYQVAARYFDC 4545 Query 483 YDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQM 542 Y+GGCI + +V+V NL+KSAG+P NK+GKA LYY+S+SYE+QDA+F+ TKRN++PT+TQ+ Sbjct 4546 YEGGCITSREVVVTNLNKSAGWPLNKFGKAGLYYESISYEEQDAIFSLTKRNILPTMTQL 4605 Query 543 NLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML 602 NLKYAIS K RARTV GVS+ +TMT RQFHQK LKSI ATR ATVVIGT+KFYGGW NML Sbjct 4606 NLKYAISGKERARTVGGVSLLATMTTRQFHQKCLKSIVATRNATVVIGTTKFYGGWDNML 4665 Query 603 KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQV 662 K + +DV++P LMGWDYPKCDRAMP+M+R++++++L KH TCC+ S +FYRL+NE AQV Sbjct 4666 KNLMADVDDPKLMGWDYPKCDRAMPSMIRMLSAMILGSKHVTCCTASDKFYRLSNELAQV 4725 Query 663 LSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRN 722 L+E+V G Y KPGGT+SGDATTAYANSVFNI QAV++N+N +LS + + + V+ Sbjct 4726 LTEVVYSNGGFYFKPGGTTSGDATTAYANSVFNIFQAVSSNINCVLSVNSSNCNNFNVKK 4785 Query 723 LQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNF 782 LQ +LY+ YRN +VD FV++FY YL+KHFSMMILSDD+VVC+N TYA G +A I F Sbjct 4786 LQRQLYDNCYRNSNVDESFVDDFYGYLQKHFSMMILSDDSVVCYNKTYAGLGYIADISAF 4845 Query 783 KSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGC 842 K+ LYYQN VFMS AKCWTE DL+ GPHEFCSQHTM + + YLPYPDPSRI+ AG Sbjct 4846 KATLYYQNGVFMSTAKCWTEEDLSIGPHEFCSQHTMQIVDENGKYYLPYPDPSRIISAGV 4905 Query 843 FVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDM 902 FVDDI KTD +++ER+VSLAIDAYPL+KHP EY VF+ L +++ L+ L +L+ Sbjct 4906 FVDDITKTDAVILLERYVSLAIDAYPLSKHPKPEYRKVFYALLDWVKHLNKTLNEGVLES 4965 Query 903 YSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 +SV L +++ S++W+ FY +MY TVLQ Sbjct 4966 FSVTLLDEHESKFWDESFYASMYEKSTVLQ 4995 >sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavirus NL63 OX=277944 GN=rep PE=1 SV=1 Length=6729 Score = 1416 bits (3665), Expect = 0.0, Method: Composition-based stats. Identities = 546/930 (59%), Positives = 690/930 (74%), Gaps = 6/930 (1%) Query 4 AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDD 63 S+LNR G SAARL PC GT D RAFDIYN V+ K LK NC RF+ D Sbjct 4046 DISYLNRARGSSAARLEPC-NGTDIDKCVRAFDIYNKNVSFLGKCLKMNCVRFKNAD--- 4101 Query 64 NLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYT 123 L D YFV+KR T S +HE+++YNLL A+A+HDFF ++ + ++SR LTKYT Sbjct 4102 -LKDGYFVIKRCTKSVMEHEQSMYNLLNFSGALAEHDFFTWKDGRVIYGNVSRHNLTKYT 4160 Query 124 MADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVR 183 M DLVYA+R+FDE NCD LKE+LV CCD+ YF+ K WYD VEN DI RVYA+LG+ V Sbjct 4161 MMDLVYAMRNFDEQNCDVLKEVLVLTGCCDNSYFDSKGWYDPVENEDIHRVYASLGKIVA 4220 Query 184 QALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMP 243 +A+LK V CDAM G+VGVLTLDNQDLNGN+YDFGDF+ + P GVP SYYS +MP Sbjct 4221 RAMLKCVALCDAMVAKGVVGVLTLDNQDLNGNFYDFGDFVVSLPNMGVPCCTSYYSYMMP 4280 Query 244 ILTLTRALTAESHVDTD-LTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCL 302 I+ LT L +E V +D + +DLLKYDFTE + LF++YFK+W YHPNC +C Sbjct 4281 IMGLTNCLASECFVKSDIFGSDFKTFDLLKYDFTEHKENLFNKYFKHWSFDYHPNCSDCY 4340 Query 303 DDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLH 362 DD C++HCANFN LF+T P T+FGPL RK+F+DGVP V + GYHF++LG+V N+DVN H Sbjct 4341 DDMCVIHCANFNTLFATTIPGTAFGPLCRKVFIDGVPLVTTAGYHFKQLGLVWNKDVNTH 4400 Query 363 SSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDF 422 S RL+ ELL + DP++ AS L+D+RT CFSVAAL+ + Q VKPG+FN++FY+F Sbjct 4401 SVRLTITELLQFVTDPSLIIASSPALVDQRTICFSVAALSTGLTNQVVKPGHFNEEFYNF 4460 Query 423 AVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDC 482 +GFF EGS + LKHFFFAQ+G+AA+ D+D+YRYN PT+ DI Q ++V +YFD Sbjct 4461 LRLRGFFDEGSELTLKHFFFAQNGDAAVKDFDFYRYNKPTILDICQARVTYKIVSRYFDI 4520 Query 483 YDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQM 542 Y+GGCI A +V+V NL+KSAG+P NK+GKA LYY+S+SYE+QDALFA TKRNV+PT+TQ+ Sbjct 4521 YEGGCIKACEVVVTNLNKSAGWPLNKFGKASLYYESISYEEQDALFALTKRNVLPTMTQL 4580 Query 543 NLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML 602 NLKYAIS K RARTV GVS+ STMT RQ+HQK LKSI TR ATVVIGT+KFYGGW+NML Sbjct 4581 NLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRNATVVIGTTKFYGGWNNML 4640 Query 603 KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQV 662 +T+ VENP LMGWDYPKCDRA+PNM+R+++++VL KH CC+ + RFYRL NE AQV Sbjct 4641 RTLIDGVENPMLMGWDYPKCDRALPNMIRMISAMVLGSKHVNCCTATDRFYRLGNELAQV 4700 Query 663 LSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRN 722 L+E+V G Y KPGGT+SGDA+TAYANS+FNI QAV++N+N LLS + + VR+ Sbjct 4701 LTEVVYSNGGFYFKPGGTTSGDASTAYANSIFNIFQAVSSNINRLLSVPSDSCNNVNVRD 4760 Query 723 LQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNF 782 LQ RLY+ YR V+ F++++Y YLRKHFSMMILSDD VVC+N YA G +A I F Sbjct 4761 LQRRLYDNCYRLTSVEESFIDDYYGYLRKHFSMMILSDDGVVCYNKDYAELGYIADISAF 4820 Query 783 KSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGC 842 K+ LYYQNNVFMS +KCW E DLTKGPHEFCSQHTM + D YLPYPDPSRIL AG Sbjct 4821 KATLYYQNNVFMSTSKCWVEEDLTKGPHEFCSQHTMQIVDKDGTYYLPYPDPSRILSAGV 4880 Query 843 FVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDM 902 FVDD+VKTD +++ER+VSLAIDAYPL+KHPN EY VF++ L +++ L+ L +L+ Sbjct 4881 FVDDVVKTDAVVLLERYVSLAIDAYPLSKHPNSEYRKVFYVLLDWVKHLNKNLNEGVLES 4940 Query 903 YSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 +SV L ++ ++W +FY +MY T+LQ Sbjct 4941 FSVTLLDNQEDKFWCEDFYASMYENSTILQ 4970 >sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmissible gastroenteritis coronavirus (strain Purdue) OX=11151 GN=rep PE=1 SV=1 Length=6684 Score = 1402 bits (3629), Expect = 0.0, Method: Composition-based stats. Identities = 552/930 (59%), Positives = 689/930 (74%), Gaps = 6/930 (1%) Query 4 AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDD 63 QS+LNRV G SAARL PC GT D V RAFDIYN VA KFLKTNC RF+ D+ Sbjct 4003 DQSYLNRVRGSSAARLEPC-NGTDPDHVSRAFDIYNKDVACIGKFLKTNCSRFRNLDKH- 4060 Query 64 NLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYT 123 D+Y++VKR T + HE+ YN LKD AVA+HDFF ++ +++R+ LTKYT Sbjct 4061 ---DAYYIVKRCTKTVMDHEQVCYNDLKDSGAVAEHDFFTYKEGRCEFGNVARRNLTKYT 4117 Query 124 MADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVR 183 M DL YA+R+FDE NC+ LKEILVT C +++F KDW+D VEN I VYA LG V Sbjct 4118 MMDLCYAIRNFDEKNCEVLKEILVTVGACTEEFFENKDWFDPVENEAIHEVYAKLGPIVA 4177 Query 184 QALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMP 243 A+LK V FCDA+ G +GV+TLDNQDLNGN+YDFGDF++T PG G V SYYS +MP Sbjct 4178 NAMLKCVAFCDAIVEKGYIGVITLDNQDLNGNFYDFGDFVKTAPGFGCACVTSYYSYMMP 4237 Query 244 ILTLTRALTAESHVDTDL-TKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCL 302 ++ +T L +E+ V +D+ Y ++DLL YDFTE + LF +YFKYWD+TYHPNC +C Sbjct 4238 LMGMTSCLESENFVKSDIYGSDYKQYDLLAYDFTEHKEYLFQKYFKYWDRTYHPNCSDCT 4297 Query 303 DDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLH 362 D CI+HCANFN LFS P T+FGPLVRK+ +DGVP VV+ GYHF++LG+V N DV L Sbjct 4298 SDECIIHCANFNTLFSMTIPMTAFGPLVRKVHIDGVPVVVTAGYHFKQLGIVWNLDVKLD 4357 Query 363 SSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDF 422 + +LS +LL + DP + AS LLD+RT CFS+AAL+ + +QTVKPG+FNKDFYDF Sbjct 4358 TMKLSMTDLLRFVTDPTLLVASSPALLDQRTVCFSIAALSTGITYQTVKPGHFNKDFYDF 4417 Query 423 AVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDC 482 +GFF+EGS + LKHFFFAQ G AA++D++YYRYN T+ DI Q FV ++V KYF+C Sbjct 4418 ITERGFFEEGSELTLKHFFFAQGGEAAMTDFNYYRYNRVTVLDICQAQFVYKIVGKYFEC 4477 Query 483 YDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQM 542 YDGGCINA +V+V N DKSAG+P NK+GKARLYY+++SYE+QDALFA TKRNV+PT+TQM Sbjct 4478 YDGGCINAREVVVTNYDKSAGYPLNKFGKARLYYETLSYEEQDALFALTKRNVLPTMTQM 4537 Query 543 NLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML 602 NLKYAIS K RARTV GVS+ STMT RQ+HQK LKSIAATR ATVVIG++KFYGGW NML Sbjct 4538 NLKYAISGKARARTVGGVSLLSTMTTRQYHQKHLKSIAATRNATVVIGSTKFYGGWDNML 4597 Query 603 KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQV 662 K + DV+N LMGWDYPKCDRA+PNM+R+ ++++L KH CC+ + RFYRL+NE AQV Sbjct 4598 KNLMRDVDNGCLMGWDYPKCDRALPNMIRMASAMILGSKHVGCCTHNDRFYRLSNELAQV 4657 Query 663 LSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRN 722 L+E+V C G Y KPGGT+SGD TTAYANS FNI QAV+ANVN LL D N + V++ Sbjct 4658 LTEVVHCTGGFYFKPGGTTSGDGTTAYANSAFNIFQAVSANVNKLLGVDSNACNNVTVKS 4717 Query 723 LQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNF 782 +Q ++Y+ YR+ +D +FV E+++YLRKHFSMMILSDD VVC+N YA G VA I F Sbjct 4718 IQRKIYDNCYRSSSIDEEFVVEYFSYLRKHFSMMILSDDGVVCYNKDYADLGYVADINAF 4777 Query 783 KSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGC 842 K+ LYYQNNVFMS +KCW E DL+ GPHEFCSQHT+ + D YLPYPDPSRIL AG Sbjct 4778 KATLYYQNNVFMSTSKCWVEPDLSVGPHEFCSQHTLQIVGPDGDYYLPYPDPSRILSAGV 4837 Query 843 FVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDM 902 FVDDIVKTD +M+ER+VSLAIDAYPLTKHP Y VF+ L +++ L L +LD Sbjct 4838 FVDDIVKTDNVIMLERYVSLAIDAYPLTKHPKPAYQKVFYTLLDWVKHLQKNLNAGVLDS 4897 Query 903 YSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 +SV + + ++W EFY ++Y TVLQ Sbjct 4898 FSVTMLEEGQDKFWSEEFYASLYEKSTVLQ 4927 >sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavirus (strain FIPV WSU-79/1146) OX=33734 GN=rep PE=1 SV=2 Length=6709 Score = 1374 bits (3556), Expect = 0.0, Method: Composition-based stats. Identities = 547/930 (59%), Positives = 684/930 (74%), Gaps = 6/930 (1%) Query 4 AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDD 63 QS+LN + L PC GT D V RAFDIYN VA KFLKTNC RF+ D+ Sbjct 4028 DQSYLNECGVLVQLDLEPC-NGTDPDHVSRAFDIYNKDVACIGKFLKTNCSRFRNLDKH- 4085 Query 64 NLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYT 123 D+Y+VVKR T S HE+ YN LKD VA+HDFF ++ +++R+ LTKYT Sbjct 4086 ---DAYYVVKRCTKSVMDHEQVCYNDLKDSGVVAEHDFFLYKEGRCEFGNVARKDLTKYT 4142 Query 124 MADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVR 183 M DL YA+R+FDE NC+ LKEILVT C++ +F KDW+D VEN I VYA LG V Sbjct 4143 MMDLCYAIRNFDEKNCEVLKEILVTLGACNESFFENKDWFDPVENEAIHEVYARLGPIVA 4202 Query 184 QALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMP 243 A+LK V FCDA+ G +G++TLDNQDLNGN+YDFGDF++TTPG G V SYYS +MP Sbjct 4203 NAMLKCVAFCDAIVEKGYIGIITLDNQDLNGNFYDFGDFVKTTPGFGCACVTSYYSYMMP 4262 Query 244 ILTLTRALTAESHVDTDL-TKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCL 302 ++ +T L +E+ V +D+ Y ++DLL YDFT+ + KLF +YFK+WD+TYHPNC +C Sbjct 4263 LMGMTSCLESENFVKSDIYGADYKQYDLLAYDFTDHKEKLFHKYFKHWDRTYHPNCSDCT 4322 Query 303 DDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLH 362 D CI+HCANFN LFS P T+FGPLVRK+ +DGVP VV+ GYHF++LG+V N DV L Sbjct 4323 SDECIIHCANFNTLFSMTIPSTAFGPLVRKVHIDGVPVVVTAGYHFKQLGIVWNLDVKLD 4382 Query 363 SSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDF 422 + +LS +LL + DP + AS LLD+RT CFS+AAL+ V +QTVKPG+FNKDFYDF Sbjct 4383 TMKLSMTDLLRFVTDPTLLVASSPALLDQRTVCFSIAALSTGVTYQTVKPGHFNKDFYDF 4442 Query 423 AVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDC 482 +GFF+EGS + LKHFFFAQ G AA++D++YYRYN T+ DI Q FV ++V KYF+C Sbjct 4443 ITERGFFEEGSELTLKHFFFAQGGEAAMTDFNYYRYNRVTVLDICQAQFVYKIVGKYFEC 4502 Query 483 YDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQM 542 YDGGCINA +V+V N DKSAG+P NK+GKARLYY+++SYE+QDALFA TKRNV+PT+TQM Sbjct 4503 YDGGCINAREVVVTNYDKSAGYPLNKFGKARLYYETLSYEEQDALFALTKRNVLPTMTQM 4562 Query 543 NLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML 602 NLKYAIS K RARTV GVS+ STMT RQ+HQK LKSIAATR ATVVIG++KFYGGW NML Sbjct 4563 NLKYAISGKARARTVGGVSLLSTMTTRQYHQKHLKSIAATRNATVVIGSTKFYGGWDNML 4622 Query 603 KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQV 662 K + DV+N LMGWDYPKCDRA+PNM+R+ ++++L KH CC+ S RFYRL+NE AQV Sbjct 4623 KNLMRDVDNGCLMGWDYPKCDRALPNMIRMASAMILGSKHVGCCTHSDRFYRLSNELAQV 4682 Query 663 LSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRN 722 L+E+V C G Y KPGGT+SGD TTAYANS FNI QAV+ANVN LL D N + V++ Sbjct 4683 LTEVVHCTGGFYFKPGGTTSGDGTTAYANSAFNIFQAVSANVNKLLGVDSNACNNVTVKS 4742 Query 723 LQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNF 782 +Q ++Y+ YR+ +D +FV E+++YLRKHFSMMILSDD VVC+N YA G VA I F Sbjct 4743 IQRKIYDNCYRSSSIDEEFVVEYFSYLRKHFSMMILSDDGVVCYNKDYADLGYVADINAF 4802 Query 783 KSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGC 842 K+ LYYQNNVFMS +KCW E DL+ GPHEFCSQHT+ + D YLPYPDPSRIL AG Sbjct 4803 KATLYYQNNVFMSTSKCWVEPDLSVGPHEFCSQHTLQIVGPDGDYYLPYPDPSRILSAGV 4862 Query 843 FVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDM 902 FVDDIVKTD +M+ER+VSLAIDAYPLTKHP Y VF+ L +++ L L +LD Sbjct 4863 FVDDIVKTDNVIMLERYVSLAIDAYPLTKHPKPAYQKVFYTLLDWVKHLQKNLNAGVLDS 4922 Query 903 YSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 +SV + + ++W EFY ++Y TVLQ Sbjct 4923 FSVTMLEEGQDKFWSEEFYASLYEKSTVLQ 4952 >sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectious bronchitis virus (strain Beaudette CK) OX=160235 GN=rep PE=3 SV=1 Length=6629 Score = 1372 bits (3552), Expect = 0.0, Method: Composition-based stats. Identities = 579/937 (62%), Positives = 705/937 (75%), Gaps = 13/937 (1%) Query 4 AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQE----K 59 +++LNRV G S ARL P +G DVV RAFD+ N + AG + LK NC RFQE + Sbjct 3937 DKNYLNRVRGSSEARLIPLASGCDPDVVKRAFDVCNKESAGMFQNLKRNCARFQELRDTE 3996 Query 60 DEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRL 119 D + +DSYFVVK+ T SNY+HE++ Y LK A HDFF F + + +ISRQRL Sbjct 3997 DGNLEYLDSYFVVKQTTPSNYEHEKSCYEDLKS-EVTADHDFFVFNKN---IYNISRQRL 4052 Query 120 TKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDD---DYFN-KKDWYDFVENPDILRVY 175 TKYTM D YALRHFD +C+ LKEILVTY C +D +F KDWYD +EN + Sbjct 4053 TKYTMMDFCYALRHFDPKDCEVLKEILVTYGCIEDYHPKWFEENKDWYDPIENSKYYVML 4112 Query 176 ANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVD 235 A +G VR+ALL ++F + M G VGV+TLDNQDLNG +YDFGDF +T PG+GVPV D Sbjct 4113 AKMGPIVRRALLNAIEFGNLMVEKGYVGVITLDNQDLNGKFYDFGDFQKTAPGAGVPVFD 4172 Query 236 SYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYH 295 +YYS +MPI+ +T AL E + + D+ K Y +DLLKYD+TEE+ +LF +YFKYWDQ YH Sbjct 4173 TYYSYMMPIIAMTDALAPERYFEYDVHKGYKSYDLLKYDYTEEKQELFQKYFKYWDQEYH 4232 Query 296 PNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVH 355 PNC +C DDRC++HCANFN+LFST+ P TSFG L RK+FVDGVPF+ + GYH +ELGV+ Sbjct 4233 PNCRDCSDDRCLIHCANFNILFSTLIPQTSFGNLCRKVFVDGVPFIATCGYHSKELGVIM 4292 Query 356 NQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNF 415 NQD + S++ +L+ + DPA+ + N L+D RT+CFSV ALT+ + QTVKPG+F Sbjct 4293 NQDNTMSFSKMGLSQLMQFVGDPALLVGTSNNLVDLRTSCFSVCALTSGITHQTVKPGHF 4352 Query 416 NKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEV 475 NKDFYDFA G FKEGSS+ LKHFF+ Q GNAAI+DYDYYRYN PTM DI QLLF +EV Sbjct 4353 NKDFYDFAEKAGMFKEGSSIPLKHFFYPQTGNAAINDYDYYRYNRPTMFDICQLLFCLEV 4412 Query 476 VDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNV 535 KYF+CY+GGCI A+QV+VNNLDKSAG+PFNK+GKARLYY+ MS E+QD LF TK+NV Sbjct 4413 TSKYFECYEGGCIPASQVVVNNLDKSAGYPFNKFGKARLYYE-MSLEEQDQLFEITKKNV 4471 Query 536 IPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFY 595 +PTITQMNLKYAISAKNRARTVAGVSI STMTNRQFHQK+LKSI TR A+VVIGT+KFY Sbjct 4472 LPTITQMNLKYAISAKNRARTVAGVSILSTMTNRQFHQKILKSIVNTRNASVVIGTTKFY 4531 Query 596 GGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRL 655 GGW NML+ + VE+P LMGWDYPKCDRAMPN+LRI ASLVLARKHT CCS S R YRL Sbjct 4532 GGWDNMLRNLIQGVEDPILMGWDYPKCDRAMPNLLRIAASLVLARKHTNCCSWSERIYRL 4591 Query 656 ANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKI 715 NECAQVLSE V+ G +YVKPGGTSSGDATTAYANSVFNI QA +ANV LLS I Sbjct 4592 YNECAQVLSETVLATGGIYVKPGGTSSGDATTAYANSVFNIIQATSANVARLLSVITRDI 4651 Query 716 ADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGL 775 +++LQ+ LY+ +YR + D FV +FY+YL K+FS+MILSDD VVC+N+T A QGL Sbjct 4652 VYDNIKSLQYELYQQVYRRVNFDPAFVEKFYSYLCKNFSLMILSDDGVVCYNNTLAKQGL 4711 Query 776 VASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPS 835 VA I F+ VLYYQNNVFM+++KCW E DL KGPHEFCSQHTMLV+ + YLPYPDPS Sbjct 4712 VADISGFREVLYYQNNVFMADSKCWVEPDLEKGPHEFCSQHTMLVEVDGEPKYLPYPDPS 4771 Query 836 RILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDEL 895 RILGA FVDD+ KT+ ++ER+++LAIDAYPL H N+EY VF + L YIRKL+ EL Sbjct 4772 RILGACVFVDDVDKTEPVAVMERYIALAIDAYPLVHHENEEYKKVFFVLLAYIRKLYQEL 4831 Query 896 TGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 + +ML YS ++ D S++WE EFYE MY T LQ Sbjct 4832 SQNMLMDYSFVMDIDKGSKFWEQEFYENMYRAPTTLQ 4868 >sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious bronchitis virus (strain Beaudette) OX=11122 GN=rep PE=1 SV=1 Length=6629 Score = 1372 bits (3552), Expect = 0.0, Method: Composition-based stats. Identities = 579/937 (62%), Positives = 705/937 (75%), Gaps = 13/937 (1%) Query 4 AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQE----K 59 +++LNRV G S ARL P +G DVV RAFD+ N + AG + LK NC RFQE + Sbjct 3937 DKNYLNRVRGSSEARLIPLASGCDPDVVKRAFDVCNKESAGMFQNLKRNCARFQELRDTE 3996 Query 60 DEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRL 119 D + +DSYFVVK+ T SNY+HE++ Y LK A HDFF F + + +ISRQRL Sbjct 3997 DGNLEYLDSYFVVKQTTPSNYEHEKSCYEDLKS-EVTADHDFFVFNKN---IYNISRQRL 4052 Query 120 TKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDD---DYFN-KKDWYDFVENPDILRVY 175 TKYTM D YALRHFD +C+ LKEILVTY C +D +F KDWYD +EN + Sbjct 4053 TKYTMMDFCYALRHFDPKDCEVLKEILVTYGCIEDYHPKWFEENKDWYDPIENSKYYVML 4112 Query 176 ANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVD 235 A +G VR+ALL ++F + M G VGV+TLDNQDLNG +YDFGDF +T PG+GVPV D Sbjct 4113 AKMGPIVRRALLNAIEFGNLMVEKGYVGVITLDNQDLNGKFYDFGDFQKTAPGAGVPVFD 4172 Query 236 SYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYH 295 +YYS +MPI+ +T AL E + + D+ K Y +DLLKYD+TEE+ +LF +YFKYWDQ YH Sbjct 4173 TYYSYMMPIIAMTDALAPERYFEYDVHKGYKSYDLLKYDYTEEKQELFQKYFKYWDQEYH 4232 Query 296 PNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVH 355 PNC +C DDRC++HCANFN+LFST+ P TSFG L RK+FVDGVPF+ + GYH +ELGV+ Sbjct 4233 PNCRDCSDDRCLIHCANFNILFSTLIPQTSFGNLCRKVFVDGVPFIATCGYHSKELGVIM 4292 Query 356 NQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNF 415 NQD + S++ +L+ + DPA+ + N L+D RT+CFSV ALT+ + QTVKPG+F Sbjct 4293 NQDNTMSFSKMGLSQLMQFVGDPALLVGTSNNLVDLRTSCFSVCALTSGITHQTVKPGHF 4352 Query 416 NKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEV 475 NKDFYDFA G FKEGSS+ LKHFF+ Q GNAAI+DYDYYRYN PTM DI QLLF +EV Sbjct 4353 NKDFYDFAEKAGMFKEGSSIPLKHFFYPQTGNAAINDYDYYRYNRPTMFDICQLLFCLEV 4412 Query 476 VDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNV 535 KYF+CY+GGCI A+QV+VNNLDKSAG+PFNK+GKARLYY+ MS E+QD LF TK+NV Sbjct 4413 TSKYFECYEGGCIPASQVVVNNLDKSAGYPFNKFGKARLYYE-MSLEEQDQLFEITKKNV 4471 Query 536 IPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFY 595 +PTITQMNLKYAISAKNRARTVAGVSI STMTNRQFHQK+LKSI TR A+VVIGT+KFY Sbjct 4472 LPTITQMNLKYAISAKNRARTVAGVSILSTMTNRQFHQKILKSIVNTRNASVVIGTTKFY 4531 Query 596 GGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRL 655 GGW NML+ + VE+P LMGWDYPKCDRAMPN+LRI ASLVLARKHT CCS S R YRL Sbjct 4532 GGWDNMLRNLIQGVEDPILMGWDYPKCDRAMPNLLRIAASLVLARKHTNCCSWSERIYRL 4591 Query 656 ANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKI 715 NECAQVLSE V+ G +YVKPGGTSSGDATTAYANSVFNI QA +ANV LLS I Sbjct 4592 YNECAQVLSETVLATGGIYVKPGGTSSGDATTAYANSVFNIIQATSANVARLLSVITRDI 4651 Query 716 ADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGL 775 +++LQ+ LY+ +YR + D FV +FY+YL K+FS+MILSDD VVC+N+T A QGL Sbjct 4652 VYDNIKSLQYELYQQVYRRVNFDPAFVEKFYSYLCKNFSLMILSDDGVVCYNNTLAKQGL 4711 Query 776 VASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPS 835 VA I F+ VLYYQNNVFM+++KCW E DL KGPHEFCSQHTMLV+ + YLPYPDPS Sbjct 4712 VADISGFREVLYYQNNVFMADSKCWVEPDLEKGPHEFCSQHTMLVEVDGEPKYLPYPDPS 4771 Query 836 RILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDEL 895 RILGA FVDD+ KT+ ++ER+++LAIDAYPL H N+EY VF + L YIRKL+ EL Sbjct 4772 RILGACVFVDDVDKTEPVAVMERYIALAIDAYPLVHHENEEYKKVFFVLLAYIRKLYQEL 4831 Query 896 TGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 + +ML YS ++ D S++WE EFYE MY T LQ Sbjct 4832 SQNMLMDYSFVMDIDKGSKFWEQEFYENMYRAPTTLQ 4868 >sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious bronchitis virus (strain M41) OX=11127 GN=rep PE=1 SV=1 Length=6631 Score = 1367 bits (3538), Expect = 0.0, Method: Composition-based stats. Identities = 579/940 (62%), Positives = 701/940 (75%), Gaps = 13/940 (1%) Query 1 SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQE-- 58 S +++LNRV G S ARL P G DVV RAFD+ N + AG + LK NC RFQE Sbjct 3936 SGFDKNYLNRVRGSSEARLIPLANGCDPDVVKRAFDVCNKESAGMFQNLKRNCARFQEVR 3995 Query 59 --KDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISR 116 +D + DSYFVVK+ T SNY+HE+ Y LK A HDFF F + + +ISR Sbjct 3996 DTEDGNLEYCDSYFVVKQTTPSNYEHEKACYEDLKS-EVTADHDFFVFNKN---IYNISR 4051 Query 117 QRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDD---DYFN-KKDWYDFVENPDIL 172 QRLTKYTM D YALRHFD +C+ LKEILVTY C +D +F KDWYD +ENP Sbjct 4052 QRLTKYTMMDFCYALRHFDPKDCEVLKEILVTYGCIEDYHPKWFEENKDWYDPIENPKYY 4111 Query 173 RVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVP 232 + A +G VR+ALL ++F + M G VGV+TLDNQDLNG +YDFGDF +T PG+GVP Sbjct 4112 AMLAKMGPIVRRALLNAIEFGNLMVEKGYVGVITLDNQDLNGKFYDFGDFQKTAPGAGVP 4171 Query 233 VVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQ 292 V D+YYS +MPI+ +T AL E + + D+ K Y +DLLKYD+TEE+ LF +YFKYWDQ Sbjct 4172 VFDTYYSYMMPIIAMTDALAPERYFEYDVHKGYKSYDLLKYDYTEEKQDLFQKYFKYWDQ 4231 Query 293 TYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELG 352 YHPNC +C DDRC++HCANFN+LFST+ P TSFG L RK+FVDGVPF+ + GYH +ELG Sbjct 4232 EYHPNCRDCSDDRCLIHCANFNILFSTLVPQTSFGNLCRKVFVDGVPFIATCGYHSKELG 4291 Query 353 VVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKP 412 V+ NQD + S++ +L+ + DPA+ + N L+D RT+CFSV AL + + QTVKP Sbjct 4292 VIMNQDNTMSFSKMGLSQLMQFVGDPALLVGTSNKLVDLRTSCFSVCALASGITHQTVKP 4351 Query 413 GNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFV 472 G+FNKDFYDFA G FKEGSS+ LKHFF+ Q GNAAI+DYDYYRYN PTM DIRQLLF Sbjct 4352 GHFNKDFYDFAEKAGMFKEGSSIPLKHFFYPQTGNAAINDYDYYRYNRPTMFDIRQLLFC 4411 Query 473 VEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTK 532 +EV KYF+CY+GGCI A+QV+VNNLDKSAG+PFNK+GKARLYY+ MS E+QD LF TK Sbjct 4412 LEVTSKYFECYEGGCIPASQVVVNNLDKSAGYPFNKFGKARLYYE-MSLEEQDQLFESTK 4470 Query 533 RNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTS 592 +NV+PTITQMNLKYAISAKNRARTVAGVSI STMTNRQFHQK+LKSI TR A VVIGT+ Sbjct 4471 KNVLPTITQMNLKYAISAKNRARTVAGVSILSTMTNRQFHQKILKSIVNTRNAPVVIGTT 4530 Query 593 KFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRF 652 KFYGGW NML+ + VE+P LMGWDYPKCDRAMPN+LRI ASLVLARKHT CC+ S R Sbjct 4531 KFYGGWDNMLRNLIQGVEDPILMGWDYPKCDRAMPNLLRIAASLVLARKHTNCCTWSERV 4590 Query 653 YRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDG 712 YRL NECAQVLSE V+ G +YVKPGGTSSGDATTAYANSVFNI QA +ANV LLS Sbjct 4591 YRLYNECAQVLSETVLATGGIYVKPGGTSSGDATTAYANSVFNIIQATSANVARLLSVIT 4650 Query 713 NKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYAS 772 I +++LQ+ LY+ +YR + D FV +FY+YL K+FS+MILSDD VVC+N+T A Sbjct 4651 RDIVYDDIKSLQYELYQQVYRRVNFDPAFVEKFYSYLCKNFSLMILSDDGVVCYNNTLAK 4710 Query 773 QGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYP 832 QGLVA I F+ VLYYQNNVFM+++KCW E DL KGPHEFCSQHTMLV+ + YLPYP Sbjct 4711 QGLVADISGFREVLYYQNNVFMADSKCWVEPDLEKGPHEFCSQHTMLVEVDGEPRYLPYP 4770 Query 833 DPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLH 892 DPSRIL A FVDD+ KT+ ++ER+++LAIDAYPL H N+EY VF + L YIRKL+ Sbjct 4771 DPSRILCACVFVDDLDKTESVAVMERYIALAIDAYPLVHHENEEYKKVFFVLLSYIRKLY 4830 Query 893 DELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 EL+ +ML YS ++ D S++WE EFYE MY T LQ Sbjct 4831 QELSQNMLMDYSFVMDIDKGSKFWEQEFYENMYRAPTTLQ 4870 >sp|Q9WQ77|R1AB_CVRSD Replicase polyprotein 1ab (Fragment) OS=Rat coronavirus (strain 681) OX=33740 GN=rep PE=3 SV=1 Length=307 Score = 468 bits (1205), Expect = 8e-158, Method: Composition-based stats. Identities = 225/307 (73%), Positives = 266/307 (87%), Gaps = 0/307 (0%) Query 506 FNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICST 565 FNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+TQMNLKYAISAKNRARTVAGVSI ST Sbjct 1 FNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNLKYAISAKNRARTVAGVSILST 60 Query 566 MTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRA 625 MT R FHQK LKSIAATRG VVIGT+KFYGGW +ML+ + DV++P LMGWDYPKCDRA Sbjct 61 MTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRRLIKDVDSPVLMGWDYPKCDRA 120 Query 626 MPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDA 685 MPN+LRI++SLVLARKH +CCS + RFYRLANECAQVLSE+VMCGG YVKPGGTSSGDA Sbjct 121 MPNILRIVSSLVLARKHDSCCSHTDRFYRLANECAQVLSEIVMCGGCYYVKPGGTSSGDA 180 Query 686 TTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEF 745 TTA+ANSVFNICQAV+ANV +L++ +G+KI D +R LQ RLY +YR VD FV+E+ Sbjct 181 TTAFANSVFNICQAVSANVCSLMACNGHKIEDLSIRELQKRLYSNVYRADHVDPAFVSEY 240 Query 746 YAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDL 805 Y +L KHFSMMILSDD VVC+NS +AS+G +A+I F+ VLYYQNNVFMSEAKCW ETD+ Sbjct 241 YEFLNKHFSMMILSDDGVVCYNSEFASKGYIANISAFQQVLYYQNNVFMSEAKCWVETDI 300 Query 806 TKGPHEF 812 KGPHEF Sbjct 301 EKGPHEF 307 >sp|Q9WQ76|R1AB_CVTMI Replicase polyprotein 1ab (Fragment) OS=Turkey coronavirus (strain Minnesota) OX=231430 GN=rep PE=3 SV=1 Length=306 Score = 438 bits (1126), Expect = 4e-146, Method: Composition-based stats. Identities = 213/307 (69%), Positives = 248/307 (81%), Gaps = 1/307 (0%) Query 506 FNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICST 565 FNK+GKARLYY+ MS E+QD LF TK+NV+PTITQMNLKYAISAKNRARTVAGVSI ST Sbjct 1 FNKFGKARLYYE-MSLEEQDQLFESTKKNVLPTITQMNLKYAISAKNRARTVAGVSILST 59 Query 566 MTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRA 625 MTNRQFHQK+LKSI TR A VVIGT+KFYGGW NML+ + VE+P LMGWDYPKCDRA Sbjct 60 MTNRQFHQKILKSIVNTRNAPVVIGTTKFYGGWDNMLRNLIQGVEDPILMGWDYPKCDRA 119 Query 626 MPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDA 685 MPN+LRI ASLVLARKHT CC+ S R YRL NECAQVLSE V+ G +YVKPGGTSSGDA Sbjct 120 MPNLLRITASLVLARKHTNCCTWSERIYRLYNECAQVLSETVLATGGIYVKPGGTSSGDA 179 Query 686 TTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEF 745 TTAYANSVFNI QA +ANV LLS I +++LQ+ LY+ +YR + D FV +F Sbjct 180 TTAYANSVFNIIQATSANVARLLSVITRDIVYDDIKSLQYELYQQVYRRVNFDPAFVEKF 239 Query 746 YAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDL 805 Y+YL K+FS+MI +DD VVC+N+T A QGLVA I F+ +LYYQNNV+M+++KCW E DL Sbjct 240 YSYLCKNFSLMIFADDGVVCYNNTLAKQGLVADISGFREILYYQNNVYMADSKCWVEPDL 299 Query 806 TKGPHEF 812 KGPHEF Sbjct 300 EKGPHEF 306 >sp|P0C6V7|R1AB_BEV Replicase polyprotein 1ab OS=Berne virus OX=11156 GN=rep PE=1 SV=1 Length=6857 Score = 458 bits (1178), Expect = 3e-137, Method: Composition-based stats. Identities = 123/519 (24%), Positives = 224/519 (43%), Gaps = 55/519 (11%) Query 418 DFYDFAVSKGFFKEGSSV--ELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEV 475 FYD + + G K+F++ + A++D YY Y + L V + Sbjct 4908 PFYDVGLCQELTDAGVDCGEAFKYFYYLSNPAGALADVCYYDYQGTGFYSPKLLAGVYDF 4967 Query 476 VDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWG-KARLYYDSMSYEDQDALFAYTKRN 534 + + +CY IN + + N G + Y ++ E+ LF Y ++ Sbjct 4968 MKRVTECYR---INERFTYEQAKPRKSSMGINITGYQQDAVYRALGPENIARLFEYAQKA 5024 Query 535 VIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSI---AATRGATVVIGT 591 +P T++ K+A+SAK RARTV+ S ++ R H+ + + A G +IG Sbjct 5025 PLPFCTKIITKFALSAKARARTVSSCSFIASTIFRFAHKPVTSKMVEVAQNSGGFCLIGV 5084 Query 592 SKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHR 651 SK+ + LK Y +E + G DY KCDR P R + + +L + Sbjct 5085 SKYGLKFSKFLKDKYGAIEGFDVFGSDYTKCDRTFPLSFRALTAALLYE----LGEWDEK 5140 Query 652 FYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLS-- 709 + NE + + ++C G L KPGGTSSGDATTA++N+ +N +LS Sbjct 5141 SWLYLNEVNSYMLDTMLCDGMLLNKPGGTSSGDATTAHSNTFYNYMVHYVVAFKTILSDL 5200 Query 710 TDGNKIADKYVRNL----QHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVC 765 ++GNK+ N ++++ L ++ F+N LSDD+ + Sbjct 5201 SEGNKVMRIAAHNAYTTGDYQVFNTLLEDQFQTNYFLN-------------FLSDDSFI- 5246 Query 766 FNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDD 825 F+ A + + + +NF + L + + + K W+ + EFCS H ++K + Sbjct 5247 FSKPEALK--IFTCENFSNKLQTILHTKVDQTKSWSTKGHIE---EFCSAH--IIKTDGE 5299 Query 826 YVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYL 885 Y +L P R+L + +D + D M RFV++ ++ +++ + + +F ++L Sbjct 5300 YHFL--PSRGRLLASLLILDKLSDVDIYYM--RFVAILCESAVYSRYQPEFFNGLFQVFL 5355 Query 886 QYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAM 924 +++ + + + E EFYE + Sbjct 5356 DKVQQFRKDY-----------CCDPCPPQLLEREFYENL 5383 Score = 53.9 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 42/188 (22%), Positives = 73/188 (39%), Gaps = 30/188 (16%) Query 35 FDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCP 94 D+ + AG K K+N + + + F++KR E P Sbjct 4596 IDLATEYNAGIVKVNKSNTHSVEYQSKR-------FMIKR----VKDQSEFALAKTAFLP 4644 Query 95 AVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDD 154 ++ H + + R +++++ DLVYA+ D+ D L E +N D Sbjct 4645 SIIPHHM----EKQNGEWFLIRGPTSQWSLGDLVYAIWLGDQ---DYLSECGFVFNPSRD 4697 Query 155 DYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNG 214 ++ + + F+ N + A+L ++ + LTLDN DLNG Sbjct 4698 EFLDDANQRSFLAN------------LLEPAILNFSHIYWQVKMCKVPYKLTLDNVDLNG 4745 Query 215 NWYDFGDF 222 YDFGD+ Sbjct 4746 QLYDFGDY 4753 >sp|P0C6V8|R1AB_BRV1 Replicase polyprotein 1ab OS=Breda virus 1 OX=360393 GN=rep PE=2 SV=1 Length=6733 Score = 449 bits (1155), Expect = 3e-134, Method: Composition-based stats. Identities = 119/525 (23%), Positives = 216/525 (41%), Gaps = 55/525 (10%) Query 418 DFYDFAVSKGFFKEGSSV--ELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEV 475 YD + + G K+F++ + A++D +Y Y + L V + Sbjct 4784 PLYDVGLCQELTDAGVDCGEAFKYFYYLSNPAGALADVCFYDYQGTGFYSPKLLAGVYDF 4843 Query 476 VDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWG-KARLYYDSMSYEDQDALFAYTKRN 534 + + CY + + + N G + Y ++ E+ LF Y ++ Sbjct 4844 MKRVTTCYK---TDERFTYEQAKPRKSSMGINITGYQQDAVYRALGPENITKLFEYAQKA 4900 Query 535 VIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSI---AATRGATVVIGT 591 +P T++ K+A+SAK RARTV+ S ++ R H+ + + A +IG Sbjct 4901 PLPFCTKIITKFALSAKARARTVSSCSFIASTIFRFAHKPVTSKMVEVAQNSQGFCLIGV 4960 Query 592 SKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHR 651 SK+ + LK Y +E + G DY KCDR P R + + +L Sbjct 4961 SKYGLKFSKFLKDKYGAIEQFDVFGSDYTKCDRTFPLSFRALTAALLYE----LGGWEED 5016 Query 652 FYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLS-- 709 + NE + + ++C G L KPGGTSSGDATTA++N+ +N +LS Sbjct 5017 SWLYLNEVNSYMLDTMLCDGMLLNKPGGTSSGDATTAHSNTFYNYMVHYVVAFKTILSDL 5076 Query 710 TDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFS----MMILSDDAVVC 765 +D NK+ +R H Y F L + F + LSDD+ + Sbjct 5077 SDCNKV----MRIAAHNAYTT---------GDYGVFNTLLEEQFQTNYFLNFLSDDSFI- 5122 Query 766 FNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDD 825 F+ A + + + +NF + L + + K W T + EFCS H ++K + Sbjct 5123 FSKPGALK--IFTCENFSNKLQTILHTKVDLTKSWATTGHIE---EFCSAH--IIKTDGE 5175 Query 826 YVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYL 885 Y +L P R+L + +D + D M RFV++ ++ +++ + + +F ++L Sbjct 5176 YHFL--PSRGRLLASLLILDKLSDVDIYYM--RFVAILCESAVYSRYQPEFFNGLFQVFL 5231 Query 886 QYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTV 930 +++ + + ++ + +FYE + Sbjct 5232 DKVQQFRKDY-----------CCDPCPTQLLDRQFYENLVFTSNT 5265 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 41/188 (22%), Positives = 74/188 (39%), Gaps = 30/188 (16%) Query 35 FDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCP 94 D+ + AG K K+N + F++KR QHE + P Sbjct 4472 IDLATEYNAGIVKVNKSNTHSVE-------YKGQRFMIKRVKD---QHEFAL-ARTAFLP 4520 Query 95 AVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDD 154 ++ H + + + R T++++ DLVYA+ D+ L E +N D Sbjct 4521 SIIPHHM----VHQNGEWFLVRGPTTQWSLGDLVYAIWLGDQ---AYLDECGFVFNPSRD 4573 Query 155 DYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNG 214 ++ + + ++ N + A+L + ++ + +TLDN DL G Sbjct 4574 EFLDDANQRSYLAN------------LLEPAILSFCEIFHCVKGCQVPYKITLDNLDLKG 4621 Query 215 NWYDFGDF 222 YDFGD+ Sbjct 4622 QLYDFGDY 4629 >sp|Q008X6|R1AB_WBV24 Replicase polyprotein 1ab OS=White bream virus (isolate Blicca bjoerkna L./Germany/DF24/00) OX=766180 GN=rep PE=1 SV=1 Length=6872 Score = 389 bits (998), Expect = 1e-113, Method: Composition-based stats. Identities = 120/539 (22%), Positives = 211/539 (39%), Gaps = 67/539 (12%) Query 415 FNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGN--AAISDYDYYRYNLPTMCDIRQLLFV 472 + + FYD + + G ++ + Q G A+ D+ YY YN P D L V Sbjct 4888 YKRPFYDLDLIQRMNSAGLNLSETTGYHYQCGTTTEAVEDFMYYNYNSPKSFDPSYLKSV 4947 Query 473 VEVVD-KYFDCYDGGCINANQVIVNNLDKSAGFP-FNKWGK------ARLYYDSMSYEDQ 524 + K+ I+ ++ L+ +G P + G + ++++ + Sbjct 4948 YTYMRDKFMKI-----ISTDE----KLNHQSGAPRMSSMGVGVSGFFQKTVWNALPEDFS 4998 Query 525 DALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRG 584 L + V+P T + K+ K R RT+ G S ++ R H+ + + T Sbjct 4999 PRLLDTASKTVMPFSTNIVKKFQRQKKTRVRTLGGSSFITSSIFRMLHKPVTNKMVQTAQ 5058 Query 585 ATV---VIGTSKFYGGWHNMLKTVYSD-VENPHLMGWDYPKCDRAMPNMLRIMASLVLAR 640 A + +IG SKF G+H L + + +E+ +MG DY KCDR+ P + R +++ + Sbjct 5059 ANIGPFLIGISKFNLGFHKYLSAHHPNGIEDCQVMGADYTKCDRSFPVVCRALSAALFYE 5118 Query 641 KHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAV 700 + NE L + G ++ KPGGT+SGD+TTA++NS +N + Sbjct 5119 LGHL----EPNNHWFLNEMFAFLLDPSFISGHIFNKPGGTTSGDSTTAFSNSFYNYFVHL 5174 Query 701 TANVNALLSTDGNKIADKYVRNLQHRLYEC-------LYRNRDVDTDFVNEFYAYLRKHF 753 L+T+ + + + NL H+ + LY + D + F Sbjct 5175 YIQYLTFLTTEMPP-SYQPLCNLAHQAFSTGNTETYDLYFSMADDLNSTEYF-------- 5225 Query 754 SMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFC 813 + LSDD+ + T + + NF L ++ AK W+ HEFC Sbjct 5226 -LHFLSDDSFIISKPTAFP---IFTPANFSMKLQNVLGCYVDPAKSWSADGEI---HEFC 5278 Query 814 SQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHP 873 S H + + YV PDP+ +L + D +I + V+ + Sbjct 5279 SSHICKINEKYQYV----PDPNNMLAGLICAPEPTPQDK--LIWKLVATCAELAVFHFVN 5332 Query 874 NQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 + ++F L L + +SV L + E +FY + V Q Sbjct 5333 PTLFNNIF--------HLLQSLHAEFVSEHSVNLL---PPKLLEIDFYTDLIDSEDVEQ 5380 Score = 166 bits (421), Expect = 2e-40, Method: Composition-based stats. Identities = 50/191 (26%), Positives = 76/191 (40%), Gaps = 35/191 (18%) Query 35 FDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIY---NLLK 91 +I N+ VA K K N ++ L D+ HE IY LL Sbjct 4581 INILNNNVASLRKVFKKNTASIPSENGTIMLKDT----------GTAHE--IYVAKQLLA 4628 Query 92 DCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNC 151 V +H R + D ++ R T Y++ DLVYA D K +L+ + Sbjct 4629 KGLPVLQHA----RFNHDGTDYLIRYYTTPYSLGDLVYAYMVGD------FKHMLLALDI 4678 Query 152 CDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQD 211 D+ + ++ Y N E++R L + + + A + +TLDN D Sbjct 4679 TDETCLDPGNYSS----------YYNFKEQLRNKLASVIPNVNKILAAELPLAITLDNID 4728 Query 212 LNGNWYDFGDF 222 LNG YDFGD+ Sbjct 4729 LNGFLYDFGDY 4739 >sp|F8RL29|R1AB_AMV79 Replicase polyprotein 1ab OS=Alphamesonivirus 1 (isolate Aedes harrisoni/Cote d'Ivoire/C79/2004) OX=1552985 GN=pp1ab PE=1 SV=1 Length=5088 Score = 348 bits (892), Expect = 7e-100, Method: Composition-based stats. Identities = 126/543 (23%), Positives = 215/543 (40%), Gaps = 80/543 (15%) Query 434 SVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVV------EVVDKYFDCYDGG- 486 ++ + + D +N T + +F++ +++ + DG Sbjct 3035 ETTYSSSYYIKTPSETSIRQDLELFNQNTAGSVSPTVFLMAIELLHQLLTEEISASDGKP 3094 Query 487 -CINA-NQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL 544 C ++V V N KSAG P+ K+G + + + +DA+ + + + +T Sbjct 3095 NCPMVPSEVPVRNKHKSAGTPYRKFGDSE-FMRELYGNYRDAIVYHKRHSADQQLTLTIN 3153 Query 545 KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATR--GATVVIGTSKFYGGWHNML 602 K A S +R RT+ +SI + R ++ L I T G ++IG + YGGW + Sbjct 3154 KVAPSKNHRDRTILAISINKSEPGRSLYRWNLDKIKYTSSLGGPILIGFTAQYGGWDKLY 3213 Query 603 KTVYSDVENPH--------LMGWDYPKCDRAMPNMLRIMASLVLA-------RKHTTCCS 647 K +Y + H L G DYPK DR + NML++ + VL + + Sbjct 3214 KYLYKNSPADHPDIAEHAVLGGKDYPKWDRRISNMLQLTTTTVLYSLIDPNTQSKLNNAT 3273 Query 648 LSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFN-----------I 696 + ++ E QVL + ++ G LY KPGG +SG++ TA NS+ + + Sbjct 3274 PAQTWHEYMAETTQVLFDYLVFGNELYQKPGGVTSGNSRTADGNSLLHLLIDFYAIISQL 3333 Query 697 CQAVTANV-------NALLSTDGNKIADKYVRNLQHRLYECL-YRNRDVDTDFVNEFYAY 748 Q+ NV NAL T KI Y+ + C+ RN D+ + Sbjct 3334 IQSTPENVHLEVNLRNALCKTVFTKIPSDYIDS------SCVTLRNTDI-------LHTI 3380 Query 749 LRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETD-LTK 807 R+ LSDD ++ + + +F SV + ++ +++ K D + + Sbjct 3381 RRRVAKGAYLSDDGLIVIDPR------IIRYDDFMSVSHLISHYMIAQNKHKYHIDAIQR 3434 Query 808 GPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAY 867 EF SQ T+ D VY P P+ R+ A D+ D + I R ++L Y Sbjct 3435 YAREFLSQDTIKF---GDMVY-PIPEFGRMYTAMLLSDNKNTLDPQINITRLLALFSYLY 3490 Query 868 -------PLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEF 920 HP ++ D Y++ DE+ LD V D + Sbjct 3491 IYYFKYVDQPTHPILKFLDALRTYIELKLNTTDEI---FLDCIKVPDLQDVEFDLKNCDL 3547 Query 921 YEA 923 YE Sbjct 3548 YEN 3550 >sp|A6YQT5|RPOA_PRRSV Replicase polyprotein 1ab OS=Porcine reproductive and respiratory syndrome virus OX=28344 PE=1 SV=2 Length=3931 Score = 262 bits (669), Expect = 3e-71, Method: Composition-based stats. Identities = 83/443 (19%), Positives = 161/443 (36%), Gaps = 70/443 (16%) Query 443 AQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKS- 501 + G + D +Y+L T + L V+ +V KY + G C ++ S Sbjct 2704 TEHGCEDAALRDLSKYDLSTQGFV--LPGVLRLVRKYLFAHVGKCPPVHRPSTYPAKNSM 2761 Query 502 AGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVS 561 AG N++ D S + D L A R T+T LK K + RT+ G + Sbjct 2762 AGINGNRFPTK----DIQSVPEIDVLCAQAVRENWQTVTPCTLKKQYCGKKKTRTILGTN 2817 Query 562 ICSTMTNRQFHQKLLKS-IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHL---MGW 617 + +R + + + + + +G +KF +++ P L + Sbjct 2818 NFIALAHRAALSGVTQGFMKKAFNSPIALGKNKF------------KELQAPVLGRCLEA 2865 Query 618 DYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKP 677 D CDR+ P ++R A+ +L + C+ H + N C +L V G++ K Sbjct 2866 DLASCDRSTPAIVRWFAANLL---YELACAEEHLPSYVLNCCHDLL---VTQSGAV-TKR 2918 Query 678 GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDV 737 GG SSGD T+ +N+++++ V + + G+ ++++ Sbjct 2919 GGLSSGDPITSVSNTIYSLVIYAQHMVLSYFKS-GHPHGLLFLQDQLK------------ 2965 Query 738 DTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEA 797 + + K +++ SDD V+ YA + + + L Sbjct 2966 --------FEDMLKVQPLIVYSDDLVL-----YAESPSMPNYHWWVEHLNLMLGFQTDPK 3012 Query 798 KCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIE 857 K T +T P S + G V P+ RIL A + Sbjct 3013 K----TTITDSP----SFLGCRIINGRQLV----PNRDRILAALAYHMKASNVSEYYASA 3060 Query 858 RFVSLAIDAYPLTKHPNQEYADV 880 ++ +D+ ++ + + ++ Sbjct 3061 --AAILMDSCACLEYDPEWFEEL 3081 >sp|Q9WJB2|RPOA_PRRSR Replicase polyprotein 1ab OS=Porcine reproductive and respiratory syndrome virus (strain VR-2332) OX=300559 GN=rep PE=1 SV=2 Length=3960 Score = 262 bits (669), Expect = 3e-71, Method: Composition-based stats. Identities = 83/443 (19%), Positives = 161/443 (36%), Gaps = 70/443 (16%) Query 443 AQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKS- 501 + G + D +Y+L T + L V+ +V KY + G C ++ S Sbjct 2733 TEHGCEDAALKDLSKYDLSTQGFV--LPGVLRLVRKYLFAHVGKCPPVHRPSTYPAKNSM 2790 Query 502 AGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVS 561 AG N++ D S + D L A R T+T LK K + RT+ G + Sbjct 2791 AGINGNRFPTK----DIQSVPEIDVLCAQAVRENWQTVTPCTLKKQYCGKKKTRTILGTN 2846 Query 562 ICSTMTNRQFHQKLLKS-IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHL---MGW 617 + +R + + + + + +G +KF +++ P L + Sbjct 2847 NFIALAHRAVLSGVTQGFMKKAFNSPIALGKNKF------------KELQTPVLGRCLEA 2894 Query 618 DYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKP 677 D CDR+ P ++R A+ +L + C+ H + N C +L V G++ K Sbjct 2895 DLASCDRSTPAIVRWFAANLL---YELACAEEHLPSYVLNCCHDLL---VTQSGAV-TKR 2947 Query 678 GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDV 737 GG SSGD T+ +N+++++ V + + G+ ++++ Sbjct 2948 GGLSSGDPITSVSNTIYSLVIYAQHMVLSYFKS-GHPHGLLFLQDQLK------------ 2994 Query 738 DTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEA 797 + + K +++ SDD V+ YA + + + L Sbjct 2995 --------FEDMLKVQPLIVYSDDLVL-----YAESPTMPNYHWWVEHLNLMLGFQTDPK 3041 Query 798 KCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIE 857 K T +T P S + G V P+ RIL A + Sbjct 3042 K----TAITDSP----SFLGCRIINGRQLV----PNRDRILAALAYHMKASNVSEYYASA 3089 Query 858 RFVSLAIDAYPLTKHPNQEYADV 880 ++ +D+ ++ + + ++ Sbjct 3090 --AAILMDSCACLEYDPEWFEEL 3110 >sp|Q8B912|RPOA_PRRSB Replicase polyprotein 1ab OS=Porcine reproductive and respiratory syndrome virus (strain HB-1) OX=300563 GN=rep PE=2 SV=3 Length=3961 Score = 260 bits (664), Expect = 1e-70, Method: Composition-based stats. Identities = 81/443 (18%), Positives = 158/443 (36%), Gaps = 70/443 (16%) Query 443 AQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKS- 501 + G + D +Y+L T + L V+ +V KY + G C ++ S Sbjct 2734 TEHGCEDAALRDLSKYDLVTQGFV--LPGVLRLVRKYLFAHVGKCPPVHRPSTYPAKNSM 2791 Query 502 AGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVS 561 AG N++ D S + D L A R T+T LK K + RT+ G + Sbjct 2792 AGINGNRFPTK----DIQSVPEIDVLCAQAVRENWQTVTPCTLKKQYCGKKKTRTILGTN 2847 Query 562 ICSTMTNRQFHQKLLKS-IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHL---MGW 617 + +R + + + + + +G +KF +++ P L + Sbjct 2848 NFIALAHRAALSGVTQGFMKKAFNSPIALGKNKF------------KELQTPVLGRCLEA 2895 Query 618 DYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKP 677 D CDR+ P ++R A+ +L + C+ H + N C +L V G++ K Sbjct 2896 DLASCDRSTPAIVRWFAANLL---YELACAEEHLPSYVLNCCHDLL---VTQSGAV-TKR 2948 Query 678 GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDV 737 GG SSGD T+ +N+++++ V + + G+ ++++ Sbjct 2949 GGLSSGDPITSVSNTIYSLVIYAQHMVLSYFKS-GHPHGLLFLQDQLK------------ 2995 Query 738 DTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEA 797 + + K +++ SDD V+ YA + + + L Sbjct 2996 --------FEDMLKVQPLIVYSDDLVL-----YAESPSMPNYHWWVEHLNLMLGFQTDPK 3042 Query 798 KCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIE 857 K T F + G V P+ RIL A + Sbjct 3043 KTAITDSPT-----FLG---CRIINGRQLV----PNRDRILAALAYHMKASNVSEYYASA 3090 Query 858 RFVSLAIDAYPLTKHPNQEYADV 880 ++ +D+ ++ + + ++ Sbjct 3091 --AAILMDSCACLEYDPEWFEEL 3111 >sp|Q9YN02|RPOA_PRRS1 Replicase polyprotein 1ab OS=Porcine reproductive and respiratory syndrome virus (strain 16244B) OX=300561 GN=rep PE=1 SV=3 Length=3961 Score = 259 bits (662), Expect = 3e-70, Method: Composition-based stats. Identities = 83/440 (19%), Positives = 160/440 (36%), Gaps = 64/440 (15%) Query 443 AQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKS- 501 + G + D +Y+L T + L V+ +V KY + G C ++ S Sbjct 2734 TEHGCEDAALKDLSKYDLSTQGFV--LPGVLRLVRKYLFAHVGKCPPVHRPSTYPAKNSM 2791 Query 502 AGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVS 561 AG N++ D S + D L A R T+T LK K + RT+ G + Sbjct 2792 AGINGNRFPTK----DIQSVPEIDVLCAQAVRENWQTVTPCTLKKQYCGKKKTRTILGTN 2847 Query 562 ICSTMTNRQFHQKLLKS-IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYP 620 + +R + + + + + +G +KF K + + V + D Sbjct 2848 NFIALAHRAALSGVTQGFMKKAFNSPIALGKNKF--------KELQTSVLG-RCLEADLA 2898 Query 621 KCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGT 680 CDR+ P ++R A+ +L + C+ H + N C +L V G++ K GG Sbjct 2899 SCDRSTPAIVRWFAANLL---YELACAEEHLPSYVLNCCHDLL---VTQSGAV-TKRGGL 2951 Query 681 SSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTD 740 SSGD T+ +N+++++ V + + G+ ++++ Sbjct 2952 SSGDPITSVSNTIYSLVIYAQHMVLSYFKS-GHPHGLLFLQDQLK--------------- 2995 Query 741 FVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCW 800 + + K +++ SDD V+ YA + + + L K Sbjct 2996 -----FEDMLKVQPLIVYSDDLVL-----YAESPTMPNYHWWVEHLNLMLGFQTDPKK-- 3043 Query 801 TETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFV 860 T +T P S + G V P+ RIL A + Sbjct 3044 --TAITDSP----SFLGCRIINGRQLV----PNRDRILAALAYHMKASNVSEYYASA--A 3091 Query 861 SLAIDAYPLTKHPNQEYADV 880 ++ +D+ ++ + + ++ Sbjct 3092 AILMDSCACLEYDPEWFEEL 3111 >sp|Q68772|RPOA_SHFV Replicase polyprotein 1ab OS=Simian hemorrhagic fever virus OX=38143 GN=rep PE=2 SV=4 Length=3595 Score = 246 bits (627), Expect = 7e-66, Method: Composition-based stats. Identities = 86/442 (19%), Positives = 158/442 (36%), Gaps = 65/442 (15%) Query 441 FFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCIN-ANQVIVNNLD 499 ++ Q G A + D ++NL T I L V+ +V Y G V + D Sbjct 2333 YYTQHGCEAAALQDLKKFNLSTQGFI--LPEVLNIVRNYLLGTIGYRPAIYKPSTVPSND 2390 Query 500 KSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAG 559 AG + L + D D L V T+T + LK +K + RT+ G Sbjct 2391 SHAGINGLSFSTKTL----QALPDIDELCEKAIAEVWQTVTPVTLKKQFCSKAKTRTILG 2446 Query 560 VSICSTMTNRQFHQKLLKSIA-ATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWD 618 + +++ R + + A + + + +G SKF +V+ + D Sbjct 2447 TNAMASLALRALLSGVTQGFQLAGKNSPICLGKSKF--------DPCTFEVKG-RCLETD 2497 Query 619 YPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPG 678 CDR+ P ++R A+ +L C+ + N C ++++ S K G Sbjct 2498 LASCDRSTPAIVRHFATKLLF---EMACAERALPLYVVNCCH----DLIVTQTSAATKRG 2550 Query 679 GTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVD 738 G SSGD T+ AN+++++ V V LL +G+ ++ K++ + D Sbjct 2551 GLSSGDPVTSIANTIYSLVLYVQHMVLTLLE-NGHPLSLKFLSG----------KLNFQD 2599 Query 739 TDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAK 798 + F Y SDD ++ S + + + L + K Sbjct 2600 LYKLQAFIVY----------SDDLILLNESDDLP-----NFERWVPHLELALGFKVDPKK 2644 Query 799 CWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIER 858 ++ E+ +H LV P R+L A + + + Sbjct 2645 TVITSNPGFLGCEY--RHGWLV-----------PQKQRVLAALAYHVNAKDVHTYYINA- 2690 Query 859 FVSLAIDAYPLTKHPNQEYADV 880 ++ DA L+ + D+ Sbjct 2691 -TAILNDASALSAFEPDWFDDL 2711 >sp|A0MD28|RPOA_PRRSS Replicase polyprotein 1ab OS=Porcine reproductive and respiratory syndrome virus (isolate Pig/United States/SD 01-08/2001) OX=857306 PE=1 SV=2 Length=3838 Score = 225 bits (574), Expect = 3e-59, Method: Composition-based stats. Identities = 81/443 (18%), Positives = 159/443 (36%), Gaps = 64/443 (14%) Query 440 FFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLD 499 F + G + + D +Y+L T + L V+ +V ++ + G Sbjct 2607 FMCTKHGTSKAAAEDLQKYDLSTQGFV--LPGVLRLVRRFIFGHIGKAPPLFLPSTYPAK 2664 Query 500 KS-AGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVA 558 S AG ++ D S + D + A + T+T LK +K + RT+ Sbjct 2665 NSMAGINGQRFPTK----DVQSIPEIDEMCARAVKENWQTVTPCTLKKQYCSKPKTRTIL 2720 Query 559 GVSICSTMTNRQFHQKLLKS-IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGW 617 G + + +R + ++ + + + +G +KF K ++ V + Sbjct 2721 GTNNFIALAHRSALSGVTQAFMKKAWKSPIALGKNKF--------KELHCTVAG-RCLEA 2771 Query 618 DYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKP 677 D CDR+ P ++R + +L + + + N C ++V + K Sbjct 2772 DLASCDRSTPAIVRWFVANLL---YELAGCEEYLPSYVLNCCH----DLVATQDGAFTKR 2824 Query 678 GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDV 737 GG SSGD T+ +N+V+++ V + L G++I K++ Sbjct 2825 GGLSSGDPVTSVSNTVYSLIIYAQHMVLSALKM-GHEIGLKFLEEQLK------------ 2871 Query 738 DTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEA 797 + L + M++ SDD V+ YA + + + L Sbjct 2872 --------FEDLLEIQPMLVYSDDLVL-----YAERPTFPNYHWWVEHLDLMLGFRTDPK 2918 Query 798 KCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIE 857 K T +T P S ++ G V P+ RIL A + + + + Sbjct 2919 K----TVITDKP----SFLGCRIEAGRQLV----PNRDRILAALAY--HMKAQNASEYYA 2964 Query 858 RFVSLAIDAYPLTKHPNQEYADV 880 ++ +D+ H + Y D+ Sbjct 2965 SAAAILMDSCACIDHDPEWYEDL 2987 >sp|Q04561|RPOA_PRRSL Replicase polyprotein 1ab OS=Porcine reproductive and respiratory syndrome virus (strain Lelystad) OX=11049 GN=rep PE=1 SV=3 Length=3855 Score = 225 bits (574), Expect = 3e-59, Method: Composition-based stats. Identities = 81/443 (18%), Positives = 159/443 (36%), Gaps = 64/443 (14%) Query 440 FFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLD 499 F + G + + D +Y+L T + L V+ +V ++ + G Sbjct 2624 FMCTKHGTSKAAAEDLQKYDLSTQGFV--LPGVLRLVRRFIFGHIGKAPPLFLPSTYPAK 2681 Query 500 KS-AGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVA 558 S AG ++ D S + D + A + T+T LK +K + RT+ Sbjct 2682 NSMAGINGQRFPTK----DVQSIPEIDEMCARAVKENWQTVTPCTLKKQYCSKPKTRTIL 2737 Query 559 GVSICSTMTNRQFHQKLLKS-IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGW 617 G + + +R + ++ + + + +G +KF K ++ V + Sbjct 2738 GTNNFIALAHRSALSGVTQAFMKKAWKSPIALGKNKF--------KELHCTVAG-RCLEA 2788 Query 618 DYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKP 677 D CDR+ P ++R + +L + + + N C ++V + K Sbjct 2789 DLASCDRSTPAIVRWFVANLL---YELAGCEEYLPSYVLNCCH----DLVATQDGAFTKR 2841 Query 678 GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDV 737 GG SSGD T+ +N+V+++ V + L G++I K++ Sbjct 2842 GGLSSGDPVTSVSNTVYSLVIYAQHMVLSALKM-GHEIGLKFLEEQLK------------ 2888 Query 738 DTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEA 797 + L + M++ SDD V+ YA + + + L Sbjct 2889 --------FEDLLEIQPMLVYSDDLVL-----YAERPTFPNYHWWVEHLDLMLGFRTDPK 2935 Query 798 KCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIE 857 K T +T P S ++ G V P+ RIL A + + + + Sbjct 2936 K----TVITDKP----SFLGCRIEAGRQLV----PNRDRILAALAY--HMKAQNASEYYA 2981 Query 858 RFVSLAIDAYPLTKHPNQEYADV 880 ++ +D+ H + Y D+ Sbjct 2982 SAAAILMDSCACIDHDPEWYEDL 3004 >sp|Q83017|RPOA_LDVP Replicase polyprotein 1ab OS=Lactate dehydrogenase elevating virus (strain Plagemann) OX=300016 GN=rep PE=1 SV=2 Length=3616 Score = 200 bits (509), Expect = 3e-51, Method: Composition-based stats. Identities = 66/316 (21%), Positives = 118/316 (37%), Gaps = 28/316 (9%) Query 443 AQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKS- 501 + G A+ ++ D +++L + L V+ +V +Y G S Sbjct 2434 TKHGCASAAEKDLQKFDLSRQGFV--LPGVLYMVRRYLSRLIGVRRRLFMPSTYPAKNSM 2491 Query 502 AGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVS 561 AG ++ L S+ D DAL T+T LK +K++ RT+ G + Sbjct 2492 AGINGGRFPLTWL----QSHPDIDALCKRACEEHWQTVTPCTLKKQYCSKSKTRTILGTN 2547 Query 562 ICSTMTNRQFHQKLLKS-IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYP 620 + R + + + G + +G +KF + + D Sbjct 2548 NFVALGLRSALSGVTQGFMRKGIGTPICLGKNKFTPLPVRI---------GGRCLEADLA 2598 Query 621 KCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGT 680 CDR+ P ++R + +L + + N C V+S M C + K GG Sbjct 2599 SCDRSTPAIIRWFTTNLLF---ELAGAEEWIPSYVLNCCHDVVSTMSGC----FDKRGGL 2651 Query 681 SSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNL--QHRLYE-CLYRNRDV 737 SSGD T+ +N+V+++ V + G+KI ++++ +L+E Sbjct 2652 SSGDPVTSISNTVYSLIIYAQHMVLSAFRC-GHKIGGLFLQDSLEMEQLFELQPLLVYSD 2710 Query 738 DTDFVNEFYAYLRKHF 753 D F NE HF Sbjct 2711 DVVFYNESDELPNYHF 2726 >sp|Q06502|RPOA_LDVC Replicase polyprotein 1ab OS=Lactate dehydrogenase elevating virus (strain C) OX=300015 GN=rep PE=3 SV=2 Length=3637 Score = 197 bits (501), Expect = 3e-50, Method: Composition-based stats. Identities = 84/483 (17%), Positives = 156/483 (32%), Gaps = 84/483 (17%) Query 450 ISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKS-AGFPFNK 508 +++ D +++L + L V+ +V +Y G S AG N+ Sbjct 2462 LAECDLQKFDLSRQGFV--LPGVLYMVRRYLCRLVGIRRRLFLPSTYPAKNSMAGINGNR 2519 Query 509 WGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTN 568 + + S+ D DAL + T+T LK +K + RT+ G + + Sbjct 2520 FPT----HVVQSHPDIDALCERACKEHWQTVTPCTLKKQYCSKAKTRTILGTNNFVALGL 2575 Query 569 RQFHQKLLKS-IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMP 627 R + + + G+ + +G +KF + + + D CDR+ P Sbjct 2576 RSALSGVTQGFMRKGIGSPICLGKNKFTPLPTKV---------SGRCLEADLASCDRSTP 2626 Query 628 NMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATT 687 ++R + +L + N C +S M C + K GG SSGD T Sbjct 2627 AIIRWFTTNLLF---ELAGPEEWIPSYVLNCCHDAVSTMSGC----FDKRGGLSSGDPVT 2679 Query 688 AYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYA 747 + +N+V+++ V + G+K+ ++R D+ + + + Sbjct 2680 SVSNTVYSLVIYAQHMVLSAFRC-GHKVGGLFLR----------------DSLEMEQLFE 2722 Query 748 YLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTK 807 +++ SDD VV ++ + F L +K +D Sbjct 2723 LQ----PLLVYSDD-VVLYDESSELPNYHF----FVDHLDLMLGFKTDRSKTVITSDPQF 2773 Query 808 GPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAY 867 + G V P RIL A + ++ +DA Sbjct 2774 PG--------CRIAAGRVLV----PQRDRILAALAYHMKASCVSDYFASA--AAILMDAC 2819 Query 868 PLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTP 927 + Y D+ RK R+ P FY M+ Sbjct 2820 ACCDYDEDWYFDLVCGIADCARK--------------------EGFRFPGPSFYVDMWKR 2859 Query 928 HTV 930 +V Sbjct 2860 LSV 2862 >sp|P19811|RPOA_EAVBU Replicase polyprotein 1ab OS=Equine arteritis virus (strain Bucyrus) OX=299386 GN=rep PE=1 SV=3 Length=3175 Score = 178 bits (451), Expect = 4e-44, Method: Composition-based stats. Identities = 68/350 (19%), Positives = 123/350 (35%), Gaps = 54/350 (15%) Query 454 DYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCIN-ANQVIVNNLDKSAGFPFNKWGKA 512 D +YNL T + L V +V Y G V + + AG ++ Sbjct 1971 DLEKYNLSTQGFV--LPSVFSMVRAYLKEEIGDAPPLYLPSTVPSKNSQAGINGAEFPTK 2028 Query 513 RLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFH 572 L SY D + + + ++ + T T K +K + R++ G + + R Sbjct 2029 SL----QSYCLIDDMVSQSMKSNLQTATMATCKRQYCSKYKIRSILGTNNYIGLGLRACL 2084 Query 573 QKLLKSIAAT--RGATVVIGTSKFYGGWHNMLKTVYSDVENPH--LMGWDYPKCDRAMPN 628 + + G+ + +G SKF + P + D CDR+ P Sbjct 2085 SGVTAAFQKAGKDGSPIYLGKSKF------------DPIPAPDKYCLETDLESCDRSTPA 2132 Query 629 MLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTA 688 ++R A+ ++ + N C ++V+ G + K GG SSGD T+ Sbjct 2133 LVRWFATNLIF---ELAGQPELVHSYVLNCCH----DLVVAGSVAFTKRGGLSSGDPITS 2185 Query 689 YANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAY 748 +N+++++ + L +IA+KY+ R+ Sbjct 2186 ISNTIYSLVLYTQHMLLCGLEGYFPEIAEKYLDG------SLELRDMF------------ 2227 Query 749 LRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAK 798 K+ + I SDD V+ T +Q AS + L + K Sbjct 2228 --KYVRVYIYSDDVVL----TTPNQHYAASFDRWVPHLQALLGFKVDPKK 2271 >sp|Q01901|POLG_PRSVH Genome polyprotein OS=Papaya ringspot virus (strain P / mutant HA) OX=31731 PE=3 SV=2 Length=3344 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 69/369 (19%), Positives = 131/369 (36%), Gaps = 56/369 (15%) Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALF-------AYTKR 533 +C + I ++VI+ L+ A GK R Y++ + E + AL + Sbjct 2624 ECPELEYITDSEVIIQALNMDAAVGALYTGKKRKYFEGSTVEHRQALVRKSCERLYEGRM 2683 Query 534 NVIPTITQMNLKYA---ISAKNRA------RTVAGVSICSTMTNRQFHQKLLKSIAATRG 584 V + L+ A ++ K R+ T+ G +C N F+ K ++ Sbjct 2684 GVWNGSLKAELRPAEKVLAKKTRSFTAAPLDTLLGAKVCVDDFNNWFYSKNME------- 2736 Query 585 ATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRA------MPNMLRIMASLVL 638 +G +KFY GW LK + D GW Y D + P +L + S+ L Sbjct 2737 CPWTVGMTKFYKGWDEFLK-KFPD-------GWVYCDADGSQFDSSLTPYLLNAVLSIRL 2788 Query 639 ARKHTTCCSLSHRFYRLANECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNIC 697 L N ++ ++ G++ K G +SG +T N++ + Sbjct 2789 WAMED----WDIGEQMLKNLYGEITYTPILTPDGTIVKKFKGNNSGQPSTVVDNTLMVLI 2844 Query 698 QAVTANVNALLSTDGNK------IADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRK 751 A A T + I + H +E + + + Y + ++ Sbjct 2845 TMYYALRKAGYDTKTQEDMCVFYINGDDLCIAIHPDHEHVLDSFSSSFAELGLKYDFAQR 2904 Query 752 HF---SMMILSDDAVV---CFNSTYASQGLVASIKNFKSVL--YYQNNVFMSEAKCWTET 803 H ++ +S ++ + + +VA ++ KS L + + + + W Sbjct 2905 HRNKQNLWFMSHRGILIDDIYIPKLEPERIVAILEWDKSKLPEHRLEAITAAMIESWGYG 2964 Query 804 DLTKGPHEF 812 DLT F Sbjct 2965 DLTHQIRRF 2973 >sp|P18479|POLG_ZYMVC Genome polyprotein OS=Zucchini yellow mosaic virus (strain California) OX=117128 PE=1 SV=2 Length=3080 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 55/277 (20%), Positives = 107/277 (39%), Gaps = 46/277 (17%) Query 454 DYYRYNLP---TMCDIRQLLFVVEVVDKY---FDCYDGGCINANQVIVNNLDKSAGFPFN 507 D+++YN P D + L V+ V + F+ + I + I N+L+ A Sbjct 2356 DFFKYNKPVTVNQLDHDKFLGAVDGVIRMMCDFEFNECRFITDPEEIYNSLNMKAAIGAQ 2415 Query 508 KWGKARLYYDSMSYEDQDALFAYT-------KRNVIPTITQMNLK---YAISAKNRA--- 554 GK + Y++ + D++ L + + + + L+ + K R Sbjct 2416 YRGKKKEYFEGLDDFDRERLLFQSCERLFNGYKGLWNGSLKAELRPLEKVRANKTRTFTA 2475 Query 555 ---RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVEN 611 T+ G +C N +F++K LK +G +KFYGGW +++++ Sbjct 2476 APIDTLLGAKVCVDDFNNEFYRKNLK-------CPWTVGMTKFYGGWDKLMRSLPDGWLY 2528 Query 612 PHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS-EMVMC- 669 H G + P +L A L++ + + + E + L E+V Sbjct 2529 CHADGSQFDS--SLTPALLN--AVLIIRSFYMED-------WWVGQEMLENLYAEIVYTP 2577 Query 670 ----GGSLYVKPGGTSSGDATTAYANSVFNICQAVTA 702 G+++ K G +SG +T N++ + A Sbjct 2578 ILAPDGTIFKKFRGNNSGQPSTVVDNTLMVVISIYYA 2614 >sp|O36979|POLG_ZYMVS Genome polyprotein OS=Zucchini yellow mosaic virus (strain Singapore) OX=117130 PE=3 SV=2 Length=3083 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 64/404 (16%), Positives = 141/404 (35%), Gaps = 66/404 (16%) Query 454 DYYRYNLPTMC-------DIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPF 506 D+++YN P + + + V+ ++ F+ + I + I ++L+ A Sbjct 2359 DFFKYNKPVVVNQLDHDKFLGAVNGVIRMM-CDFEFNECRFITDPEEIYDSLNMKAAIGA 2417 Query 507 NKWGKARLYYDSMSYEDQDALFAYT-------KRNVIPTITQMNLK---YAISAKNRA-- 554 GK + Y++ + D++ L + + + + L+ + K R Sbjct 2418 QYRGKKKEYFEGLDNFDRERLLFQSCERLFNGHKGLWNGSLKAELRPLEKVQANKTRTFT 2477 Query 555 ----RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVE 610 T+ G +C N +F+ K LK +G +KFYGGW +++ + Sbjct 2478 AAPIDTLLGAKVCVDDFNNEFYSKNLK-------CPWTVGMTKFYGGWDKLMRELPDGWL 2530 Query 611 NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS-EMVMC 669 H G + P +L A L++ + + + E + L E+V Sbjct 2531 YCHADGSQFDS--SLTPALLN--AVLIIRSFYMED-------WWVGQEMLENLYAEIVYT 2579 Query 670 -----GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANV-----------NALLSTDGN 713 G+++ K G +SG +T N++ + A + + +G+ Sbjct 2580 PILAPDGTIFKKFRGNNSGQPSTVVDNTLMVVISIYYACMKFGWSYEEIENKLVFFANGD 2639 Query 714 KIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSD-----DAVVCFNS 768 + V++ L + + + +F K + +S D + Sbjct 2640 DLI-LAVKDEDSGLLDNM-SASFSELGLNYDFSERTHKREDLWFMSHQAMLVDGMYIPKL 2697 Query 769 TYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEF 812 + K +++ + + + W TDL + +F Sbjct 2698 EKERIVSILEWDRSKEIMHRTEAICAAMIEAWGHTDLLREIRKF 2741 >sp|P18478|POLG_WMV2U Genome polyprotein (Fragment) OS=Watermelon mosaic virus II (isolate USA) OX=148360 PE=1 SV=3 Length=1017 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 49/278 (18%), Positives = 103/278 (37%), Gaps = 48/278 (17%) Query 454 DYYRYNLPTMC-------DIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPF 506 D+++YN P + + + V+ ++ + + +++ +L+ A Sbjct 291 DFFKYNKPVVLNEVDFNAFEKAVEGVITMMVDFEFAECLFVTDPDEIY-GSLNMKAAVGA 349 Query 507 NKWGKARLYYDSMSYEDQDALFAYT-------KRNVIPTITQMNLK---YAISAKNRA-- 554 GK + Y+ M D++ L + ++ + + L+ + K R Sbjct 350 QYKGKKQDYFSGMDSFDKERLLYLSCERLFNGEKGIWNGSLKAELRPIEKVQANKTRTFT 409 Query 555 ----RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVE 610 T+ G +C N QF+ LK +G +KFYGGW +++++ Sbjct 410 AAPLDTLLGAKVCVDDFNNQFYSFNLK-------CPWTVGMTKFYGGWDKLMRSLPDGWT 462 Query 611 NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS-EMVMC 669 H G + P +L + S CC + + + E + L E+V Sbjct 463 YCHADGSQFDS--SLTPLLLNAVLS-------IRCCFMED--WWVGREMLENLYAEIVYT 511 Query 670 -----GGSLYVKPGGTSSGDATTAYANSVFNICQAVTA 702 G+++ K G +SG +T N++ + + Sbjct 512 PILAPDGTIFKKFRGNNSGQPSTVVDNTLMVVIAMYYS 549 >sp|Q89330|POLG_ZYMVR Genome polyprotein OS=Zucchini yellow mosaic virus (strain Reunion Island) OX=117129 PE=3 SV=1 Length=3083 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 52/281 (19%), Positives = 105/281 (37%), Gaps = 48/281 (17%) Query 454 DYYRYNLPTMC-------DIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPF 506 D+++YN P + + + V+ ++ F+ + I + I ++L+ A Sbjct 2359 DFFKYNKPVIVNQLDHDKFLEAVDGVIRMM-CDFEFNECRFITDPEEIYSSLNMKAAIGA 2417 Query 507 NKWGKARLYYDSMSYEDQDALFAYT-------KRNVIPTITQMNLK---YAISAKNRA-- 554 GK + Y++ + D + L + + + + L+ + K R Sbjct 2418 QYRGKKKEYFEGLDNFDMERLLFQSCERLFNGYKGLWNGSLKAELRPLEKVQANKTRTFT 2477 Query 555 ----RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVE 610 T+ G +C N +F+ K LK +G SKFYGGW +++ + Sbjct 2478 AAPIDTLLGAKVCVDDFNNEFYSKNLK-------CPWTVGMSKFYGGWDKLMRALPDGWL 2530 Query 611 NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS-EMVMC 669 H G + P +L A L++ + + + E + L E+V Sbjct 2531 YCHADGSQFDS--SLTPALLN--AVLIIRSFYMED-------WWVGQEMLENLYAEIVYT 2579 Query 670 -----GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVN 705 G+++ K G +SG +T N++ + A + Sbjct 2580 PILAPDGTIFKKFRGNNSGQPSTVVDNTLMVVISIYYACIK 2620 >sp|A0AUJ5|POLG_BVY3 Genome polyprotein OS=Blackberry virus Y (isolate Blackberry plant/USA:Arkansas/C3ARK/2005) OX=686949 PE=1 SV=1 Length=3491 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 65/389 (17%), Positives = 126/389 (32%), Gaps = 41/389 (11%) Query 401 LTNNVAFQTVKPGNFN---------KDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAIS 451 L N+ +Q P FN + F + G + L H + + N Sbjct 2617 LPVNIKYQCDMPTFFNTRHTYEGESQPFMAYLRECGDAETFFRPLLSH-YIPSNLNGDAF 2675 Query 452 DYDYYRYNLPT----MCDIRQLLFVVEVVDKYFDC-YDGGCINAN---QVIVNNLDKSAG 503 D+++Y P + + V+ ++ Y+ I + I ++L+K A Sbjct 2676 KKDFFKYGKPVPVGLVHGPSFKIASDRVIKRFERVGYERHSIPFEFDAEAIRDDLNKHAA 2735 Query 504 FPFNKWGKARLYYDSMSYE-DQDALFAYTKR--NVIPTITQMNLKYAISAK-----NRAR 555 GK + D +S E D A R N + + +LK + +K N+ R Sbjct 2736 MGAQYVGKKEQHLDGISEEQFCDEFVASCCRLANNCDGVWKGSLKAELRSKEKVQENKTR 2795 Query 556 TVAGVSICSTMTNRQFHQKLLKSI-AATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHL 614 + + K A +G +K GWH +LK++ E Sbjct 2796 VFTSAPYDVLLGGKACVMHFNKKFYANNTKGPWTVGINKLGLGWHRLLKSLP---EGFVY 2852 Query 615 MGWDYPKCDRA-MPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSL 673 D + D + P ++ + + + + ++S M GS+ Sbjct 2853 GTGDGSQFDSSLTPLLINEVCRIRMYFMQDDELGQAMLRGLYRQIIWTLIS---MPDGSV 2909 Query 674 YVKPGGTSSGDATTAYANSVF-NICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLY 732 K G SG +T N++ + + + + I Y + L Sbjct 2910 VRKAKGNPSGQPSTVDDNTIMVMLAVEYVFAYLGITQEEMDTIFKYYANG------DDLI 2963 Query 733 RNRDVDTDFVNEFYAYLRKHFSMMILSDD 761 D + + + +L H + + +D Sbjct 2964 FAIHPDRESILNEFTHLFAHLGLNYIFED 2992 >sp|O56075|POLG_PEMVM Genome polyprotein OS=Peanut mottle virus (strain M) OX=103926 PE=3 SV=1 Length=3099 Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 46/256 (18%), Positives = 96/256 (38%), Gaps = 22/256 (9%) Query 454 DYYRY-NLPTMCDIRQLLF---VVEVVDKYFDCYDGGC--INANQVIVNNLDKSAGFPFN 507 D Y+Y N + ++ + F V V+ D G C + + I+++L+ A Sbjct 2375 DLYKYQNEIIVGEVDKDAFDNAVEAVIYLLDDLGFGECAYVTDEEAILDSLNMKAAVGAL 2434 Query 508 KWGKARLYYDSMSYEDQDALFA-------YTKRNVIPTITQMNLK-YAISAKNRARTVAG 559 GK + Y++S+S ++ + Y + V + L+ A N+ RT Sbjct 2435 YKGKKKEYFESLSEPEKHHIVQASCERLFYGEMGVWNGSLKAELRPKEKVALNKTRTFTA 2494 Query 560 VSICSTMTNRQFHQKLLKSIAA-TRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWD 618 I + + + + +G +KFYGGW +++ + H G Sbjct 2495 APIDTLLGGKCCVDDFNNRFYSLNIEGPWTVGMTKFYGGWDKLMRKLPDGWRYCHADGSQ 2554 Query 619 YPKCDRAMPNMLRI-MASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKP 677 + P +L +A ++ + R + + + ++ G++ K Sbjct 2555 FDS--SLTPFLLNAVLAVRLMFMEDWWVGEQMLRNFY----TEIIYTPILTPDGTIVKKF 2608 Query 678 GGTSSGDATTAYANSV 693 G +SG +T N++ Sbjct 2609 KGNNSGQPSTVVDNTL 2624 >sp|P89876|POLG_LMVE Genome polyprotein OS=Lettuce mosaic virus (strain E) OX=117131 PE=3 SV=1 Length=3255 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 75/453 (17%), Positives = 147/453 (32%), Gaps = 95/453 (21%) Query 454 DYYRYNLPTMCDI----RQLLFVVEVVDKYFDCYDGGC--INANQVIVNNLDKSAGFPFN 507 D +Y+ P I L V+ + GC + + I L+ A Sbjct 2529 DIMKYSTPITVGIVDCDTFLKAEKGVIKRLEKLGFSGCEYVTDEEAIFQALNMKAAVGAL 2588 Query 508 KWGKARLYYDSMSYEDQDALFAYT----------------KRNVIPTITQMNLKYAISAK 551 GK R Y++S E+++ + + K + P M K + Sbjct 2589 YSGKKRDYFESYGPEEKENILRESCKRLYTGKFGVWNGSLKSELRPMEKVMANKTRVFTA 2648 Query 552 NRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVEN 611 T+ +C N F+ K ++ A +G +KFYGGW+ +L + Sbjct 2649 APLDTLLAGKVCVDDFNNYFYSKNIE-------APWTVGMTKFYGGWNELLTKLPD---- 2697 Query 612 PHLMGWDYPKCDRAM--PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC 669 GW Y D + ++ + + VL + L N +++ ++ Sbjct 2698 ----GWVYCDADGSQFDSSLSPFLINSVLRIRLKFMEDWDLGEQMLKNLYTEIVYTAILT 2753 Query 670 GGSLYVKP-GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLY 728 S VK G +SG +T N++ V ++ +K+ Sbjct 2754 PDSTIVKKFKGNNSGQPSTVVDNTL---------MVVLAMTYTLHKL------------- 2791 Query 729 ECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYY 788 F +E + K+F + DD ++ Y S + F+ Sbjct 2792 -----------GFEDEEQDSMCKYF---VNGDDLIIAIKPEYESL-----LDQFQ----- 2827 Query 789 QNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIV 848 + F S + T+ E +K+ +++P +P RI+ ++ Sbjct 2828 --HCFKSLGLNYDFNSRTRKREELWFMSHCGIKKDG--IFIPKLEPERIVS---ILEWDR 2880 Query 849 KTDGTLMIERFVSLAIDA--YPLTKHPNQEYAD 879 +E + I++ Y H +++ Sbjct 2881 SDQPVHRLEAICAAMIESWGYDKLTHEIRKFYK 2913 >sp|Q65399|POLG_BCMNN Genome polyprotein OS=Bean common mosaic necrosis virus (strain NL-3) OX=500578 PE=2 SV=1 Length=3066 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 50/279 (18%), Positives = 100/279 (36%), Gaps = 44/279 (16%) Query 454 DYYRYNLPTMCDIRQLLFVVEVVD--KYFDCYDG--GCINANQV--IVNNLDKSAGFPFN 507 D+++YN P M + + V+ K G C+ I ++L+ A Sbjct 2360 DFFKYNKPVMLNEVNFEAFEKAVEGVKIMMIEFGFNECVYVTDPDDIYDSLNMKAAVGAQ 2419 Query 508 KWGKARLYYDSMSYEDQDALFA-------YTKRNVIPTITQMNLK---YAISAKNRA--- 554 GK + Y+ M D++ L Y ++ + + L+ + K R Sbjct 2420 YKGKKQDYFQDMDSFDKERLLFLSCERLFYGQKGIWNGSLKAELRPLEKVQANKTRTFTA 2479 Query 555 ---RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVEN 611 T+ G +C N QF+ L +G +KFYGGW +++ + Sbjct 2480 APIDTLLGAKVCVDDFNNQFYSFNLI-------CPWTVGMTKFYGGWDKLMRALPDGWVY 2532 Query 612 PHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFY----RLANECAQVLSEMV 667 H G + + L+L + ++ L N A+++ + Sbjct 2533 CHADGSQFDS----------SLTPLLLNSVLSIRSFFMEDWWVGKEMLENLYAEIVYTPI 2582 Query 668 MC-GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVN 705 + G+++ K G +SG +T N++ + + + Sbjct 2583 LTPDGTIFKKFRGNNSGQPSTVVDNTLMVVISMYYSCIK 2621 >sp|P17765|POLG_BYMV Genome polyprotein OS=Bean yellow mosaic virus OX=12197 PE=3 SV=2 Length=3056 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 89/268 (33%), Gaps = 26/268 (10%) Query 454 DYYRYNLP---TMCDIRQLLFVVEVVDKYFDCYD-GGC--INANQVIVNNLDKSAGFPFN 507 D +Y P + D R E V + C + I++ L+ A Sbjct 2337 DLMKYATPIEVGLVDTRCFERSFEKVQNMLELKGFSKCNYVTYGPDILSALNMKAAMGAL 2396 Query 508 KWGKARLYYDSMSYEDQDALF-------AYTKRNVIPTITQMNLKYAISA-KNRARTVAG 559 GK + ++ +S E D + + V + L+ N+ R+ Sbjct 2397 YSGKKKDHFSEISEEKFDNILQASCERLYSGRMGVWNGSLKAELRPQEKVLANKTRSFTA 2456 Query 560 VSICSTMTNRQFHQKLLKSIAATR-GATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWD 618 I + + + + +G +KFYGGW +L ++ GW Sbjct 2457 APIDTLLAGKVCVDDFNNKFYSLHLKIPSTVGITKFYGGWDRLLDSLPD--------GWV 2508 Query 619 YPKCDRAM--PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC-GGSLYV 675 Y D + ++ + + VL + L N +++ ++ G++ Sbjct 2509 YCDADGSQFDSSLTPYLLNAVLEMRLRLMEEWDLGEQMLKNLYTEIVYTPILTPDGTIVK 2568 Query 676 KPGGTSSGDATTAYANSVFNICQAVTAN 703 K G +SG +T N++ I A Sbjct 2569 KFKGNNSGQPSTVVDNTLMVIMAVYYAA 2596 >sp|Q01681|POLG_PPVEA Genome polyprotein (Fragment) OS=Plum pox potyvirus (strain El amar) OX=31738 PE=2 SV=1 Length=1518 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 59/356 (17%), Positives = 119/356 (33%), Gaps = 48/356 (13%) Query 492 QVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFA-------YTKRNVIPTITQMNL 544 + I + L+ A GK R Y+ S +++ K+ V + L Sbjct 784 EEIFSALNMKAAVGALYSGKKRDYFKDTSELEKEEFVRASCKRLFMGKKGVWNGSLKAEL 843 Query 545 K-YAISAKNRAR--------TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFY 595 + N+ R T+ G +C N QF+ L +G +KF Sbjct 844 RPKEKVEANKTRSFTAAPIDTLLGGKVCVDDFNNQFYSLNLH-------CPWSVGMTKFR 896 Query 596 GGWHNMLKTVYSDVENPHLMGWDYPKCDRAM--PNMLRIMASLVLARKHTTCCSLSHRFY 653 GGW +L+ + GW Y D + ++ + + VL + Sbjct 897 GGWDKLLRALPD--------GWIYCDADGSQFDSSLSPYLINAVLNIRLAFMEEWDIGEQ 948 Query 654 RLANECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDG 712 L+N +++ + G++ K G +SG +T N++ I + + D Sbjct 949 MLSNLYTEIVYTPIATPDGTIVKKFKGNNSGQPSTVVDNTLMVILAMTYSLLKLGYHPDT 1008 Query 713 NKIADKYVRN------LQHRLYECLYRNRDVDTDFVNEFYAYLRKHFS---MMILSDDAV 763 ++ +Y N H YE +Y + Y + K + + +S + Sbjct 1009 HECICRYFVNGDDLVLAVHPAYESIYDELQHHFSQLGLNYTFTTKTENKEDLWFMSHKGI 1068 Query 764 VC---FNSTYASQGL--VASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCS 814 +C + + + + ++ + S + W +L + +F S Sbjct 1069 MCEGMYIPKLEPERIVSILEWDRSSEPIHRLEAICASMVEAWGYKELLREIRKFYS 1124 >sp|P36287|POLG_SMSV4 Genome polyprotein (Fragment) OS=San Miguel sea lion virus serotype 4 OX=36407 GN=ORF1 PE=3 SV=2 Length=1214 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 32/178 (18%), Positives = 68/178 (38%), Gaps = 12/178 (7%) Query 553 RARTVAGVSICSTMTNRQFHQKLLKSIAATRG-ATVVIGTSKFYGGWHNMLKTVYSDVEN 611 + R + G + + R +++ +SI A + +G + ++ K + + Sbjct 868 KRRLIWGCDVGVSTVCRAAFKRVSESIMANHALGFIQVGINMDGPAVEDLFKRLERPKHD 927 Query 612 PHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMV-MCG 670 + + DY K D P + + +L + + + + CA + S + + Sbjct 928 RYCV--DYSKWDSTQPPKVTSQSIDILRH-------FTDKSPIVDSACATLKSNPIGIFN 978 Query 671 GSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLY 728 G + GG SG T+ NS+ N C V + V L G +++ ++ Y Sbjct 979 GVAFKVAGGLPSGMPLTSIINSL-NHCLMVGSAVVKALEDSGVQVSWNIFDSMDLFTY 1035 >sp|P20234|POLG_OMV Genome polyprotein (Fragment) OS=Ornithogalum mosaic virus OX=12204 PE=3 SV=1 Length=1136 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 61/334 (18%), Positives = 111/334 (33%), Gaps = 49/334 (15%) Query 454 DYYRYNLPTMC----DIRQLLFVVEVVDKYFDCYDGGC--INANQVIVNNLDKSAGFPFN 507 D +Y+ P + I+ V+ + D C + + + NL+ A Sbjct 437 DIMKYSKPIVLGEVDFIKFEEGYNNVLRMFHDIGFEKCEYVTDSMEVYKNLNLKAAVGAM 496 Query 508 KWGKARLYYDSMSYEDQDALFAYT-------KRNVIPTITQMNL----KYAISAKNRA-- 554 GK + Y++ MS ++ L + K V + L K K R Sbjct 497 YTGKKQQYFEGMSEDEIHQLVIASCFRLWSGKFGVWNGSLKAELRPLEKVQAC-KTRTFT 555 Query 555 ----RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVE 610 T+ G +C N QF+ K L A +G K+Y GW + + Sbjct 556 AAPLDTLLGAKVCVDDFNAQFYDKHLT-------APWTVGICKYYKGWDTFMNKLPE--- 605 Query 611 NPHLMGWDYPKCDRAM--PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVM 668 GW Y D + ++ + + VL + L+N +++ + Sbjct 606 -----GWLYCDADGSQFDSSLTPFLINSVLRLRLEFMEDWDIGARMLSNLYTEIIYTPIA 660 Query 669 C-GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRL 727 G++ K G +SG +T N++ + A+ + L I + + + Sbjct 661 TPDGTVVKKFRGNNSGQPSTVVDNTLM-VVLAMNYALAKL------SIPYEEMDSRIRYF 713 Query 728 YECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDD 761 V+ E L+ FS + L D Sbjct 714 ANGDDLLVAVEPTKGGEILDSLQASFSELGLIYD 747 >sp|Q01500|POLG_PEMVC Genome polyprotein OS=Pepper mottle virus (isolate California) OX=31737 PE=1 SV=1 Length=3068 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 79/219 (36%), Gaps = 22/219 (10%) Query 488 INANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALF-------AYTKRNVIPTIT 540 I + I L+ + GK + Y++ + ED+ + K V Sbjct 2388 ITDEEEIFKALNITTAVGAMYGGKKKEYFEKFTTEDKAEILRQSCLRLYTGKLGVWEWAL 2447 Query 541 QMNLK-YAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVV--IGTSKFYGG 597 + L+ N+ RT I + + + L ++ +G +KFYGG Sbjct 2448 KAELRSKEKIEANKTRTFTAAPIDTLLGGKVCVDDLNNQF-YSKNIECCWTVGMTKFYGG 2506 Query 598 WHNMLKTVYSDVENPHLMGWDYPKCDRAM--PNMLRIMASLVLARKHTTCCSLSHRFYRL 655 W +L + + GW Y D + ++ + + VL ++ + L Sbjct 2507 WDKLLTALPA--------GWIYCDADGSQFDSSLTPYLINAVLTIRYAFMEDWDIGYKML 2558 Query 656 ANECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSV 693 N +++ + G++ K G +SG +T NS+ Sbjct 2559 QNLYTEIIYTPISTPDGTIVKKFRGNNSGQPSTVVDNSL 2597 >sp|P19723|POLG_PRSVP Genome polyprotein (Fragment) OS=Papaya ringspot virus (strain P / mutant HA 5-1) OX=31730 PE=3 SV=1 Length=675 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 50/278 (18%), Positives = 97/278 (35%), Gaps = 40/278 (14%) Query 556 TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM 615 T+ G +C N F+ K ++ +G +KFY GW L+ + D Sbjct 46 TLLGAKVCVDDFNNWFYSKNME-------CPWTVGMTKFYKGWDEFLR-KFPD------- 90 Query 616 GWDYPKCDRA------MPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC 669 GW Y D + P +L + S+ L L N ++ ++ Sbjct 91 GWVYCDADGSQFDSSLTPYLLNAVLSIRLWAMED----WDIGEQMLKNLYGEITYTPILT 146 Query 670 -GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNK------IADKYVRN 722 G++ K G +SG +T N++ + A A T + I + Sbjct 147 PDGTIVKKFKGNNSGQPSTVVDNTLMVLITMYYALRKAGYDTKTQEDMCVFYINGDDLCI 206 Query 723 LQHRLYECLYRNRDVDTDFVNEFYAYLRKHF---SMMILSDDAVV---CFNSTYASQGLV 776 H +E + + + Y + ++H ++ +S ++ + + +V Sbjct 207 AIHPDHEHVLDSFSSSFAELGLKYDFAQRHRNKQNLWFMSHRGILIDDIYIPKLEPERIV 266 Query 777 ASIKNFKSVL--YYQNNVFMSEAKCWTETDLTKGPHEF 812 A ++ KS L + + + + W DLT F Sbjct 267 AILEWDKSKLPEHRLEAITAAMIESWGHGDLTHQIRRF 304 >sp|Q65730|POLG_BSTV1 Genome polyprotein OS=Brome streak virus (strain 11-Cal) OX=117138 PE=1 SV=1 Length=3093 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 55/289 (19%), Positives = 107/289 (37%), Gaps = 39/289 (13%) Query 494 IVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTK-------RNVIPTITQMNLKY 546 I N+L+ A GK + Y+ + E+ + +F + V + + L+ Sbjct 2392 IFNDLNLDAAMGALYAGKKKDYFVEATDEEIEEMFLRSAGKICANGHGVWSALLKAELRP 2451 Query 547 AIS-AKNRART--------VAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGG 597 A A N+ RT + G N+QF+++ L +G +KF G Sbjct 2452 AEKVAANKTRTFTSAPIDILFGAKAVVDDFNKQFYKRHLL-------GPWTVGINKFNKG 2504 Query 598 WHNMLKTVYSDVENPHLMGWDYPKCDRA-MPNMLRIMASLVLARKHTTCCSLSHRFYRLA 656 W + +++ + D + D + P ++ + ++ L + L Sbjct 2505 WDLLARSLMR---YEWFIDADGSQFDSSITPLLMNAVLTIRLYFMERDDITE----LMLR 2557 Query 657 NECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGN-K 714 N Q++S ++ G + K G +SG +T N++ + A A+ +DG+ Sbjct 2558 NLYTQIISTCMLAEDGLIVQKHRGNNSGQPSTVVDNTLCLMIAMEYARQRAI--SDGHLN 2615 Query 715 IADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAV 763 + +YV N L +DV ++ K + DDA Sbjct 2616 MQMRYVCNGDDLLINANEEAKDVVQGKYEQYI----KELELNYCFDDAF 2660 >sp|P17766|POLG_PPVNA Genome polyprotein OS=Plum pox potyvirus (isolate NAT) OX=12213 PE=3 SV=1 Length=3125 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 57/308 (19%), Positives = 108/308 (35%), Gaps = 44/308 (14%) Query 494 IVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALF-------AYTKRNVIPTITQMNLK- 545 I + L+ A GK R Y++++S +D+++ K+ V + L+ Sbjct 2410 IFSALNMKAAVGALYSGKKRDYFENVSDQDKESFVRASCKRLFMGKKGVWNGSLKAELRP 2469 Query 546 YAISAKNRAR--------TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGG 597 N+ R T+ G +C N QF+ L +G +KF GG Sbjct 2470 KEKVEANKTRSFTAAPIDTLLGGKVCVDDFNNQFYSLNLH-------CPWSVGMTKFRGG 2522 Query 598 WHNMLKTVYSDVENPHLMGWDYPKCDRAM--PNMLRIMASLVLARKHTTCCSLSHRFYRL 655 W +LK + GW Y D + ++ + + VL + L Sbjct 2523 WDKLLKALPE--------GWIYCDADGSQFDSSLSPYLINAVLNIRLAFMEEWDIGEQML 2574 Query 656 ANECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNK 714 +N +++ + G++ K G +SG +T N++ I + + D + Sbjct 2575 SNLYTEIVYTPIATPDGTIVKKFKGNNSGQPSTVVDNTLMVILAMTYSLLKLGHHPDTHD 2634 Query 715 IADKYVRN------LQHRLYECLYRNRDVDTDFVNEFYAYLRK---HFSMMILSDDAVVC 765 +Y N H YE +Y + Y + K + +S V+ Sbjct 2635 CICRYFVNGDDLVLAVHPAYESIYDELQEHFSQLGLNYTFTTKTENKEELWFMSHKGVL- 2693 Query 766 FNSTYASQ 773 ++ Y + Sbjct 2694 YDDMYIPK 2701 >sp|Q65729|POLG_BSTVG Genome polyprotein (Fragment) OS=Brome streak virus (strain German) OX=117139 PE=2 SV=1 Length=942 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 54/289 (19%), Positives = 108/289 (37%), Gaps = 39/289 (13%) Query 494 IVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTK-------RNVIPTITQMNLKY 546 I N+L+ A GK + Y+ + E+ + +F + V + + L+ Sbjct 225 IFNDLNLDAAMGALYAGKKKDYFVEATDEEIEEMFLRSAGKICANGHGVWSALLKAELRP 284 Query 547 AIS-AKNRART--------VAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGG 597 A A N+ RT + G N+QF+++ L +G +KF G Sbjct 285 AEKVAANKTRTFTSAPIDILFGAKAVVDDFNKQFYKRHLL-------GPWTVGINKFNKG 337 Query 598 WHNMLKTVYSDVENPHLMGWDYPKCDRA-MPNMLRIMASLVLARKHTTCCSLSHRFYRLA 656 W + +++ + D + D + P ++ + ++ L + L Sbjct 338 WDLLARSLMR---YEWFIDADGSQFDSSITPLLMNAVLTIRLYFMERDDITE----LMLR 390 Query 657 NECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGN-K 714 N Q++S ++ G + K G +SG +T N++ + A A+ +DG+ Sbjct 391 NLYTQIISTCMLAEDGLIVQKHRGNNSGQPSTVVDNTLCLMIAMEYARQRAI--SDGHLN 448 Query 715 IADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAV 763 + +YV N L ++V + ++ K + DDA Sbjct 449 MQMRYVCNGDDLLINANEEAKEVVQNKYEQYI----KELELNYCFDDAF 493 >sp|P09814|POLG_TVMV Genome polyprotein OS=Tobacco vein mottling virus OX=12228 PE=1 SV=2 Length=3023 Score = 47.4 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 82/234 (35%), Gaps = 34/234 (15%) Query 488 INANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYT---------------- 531 + Q I N L+ A GK + Y++ +S + L + Sbjct 2354 VTDEQTIKNALNMDAAVGALYSGKKKQYFEDLSDDAVANLVQKSCLRLFKNKLGVWNGSL 2413 Query 532 KRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGT 591 K + P + K T+ G +C N F+ K ++ +G Sbjct 2414 KAELRPFEKLIENKTRTFTAAPIETLLGGKVCVDDFNNHFYSKHIQ-------CPWSVGM 2466 Query 592 SKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAM--PNMLRIMASLVLARKHTTCCSLS 649 +KFYGGW+ +L + GW Y D + ++ + + VL + ++ Sbjct 2467 TKFYGGWNELLGKLPD--------GWVYCDADGSQFDSSLSPYLINAVLRLRLSSMEEWD 2518 Query 650 HRFYRLANECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNICQAVTA 702 L N +++ + G++ K G +SG +T N++ + A Sbjct 2519 VGQKMLQNLYTEIVYTPISTPDGTIVKKFKGNNSGQPSTVVDNTLMVVLAMYYA 2572 >sp|P13529|POLG_PPVD Genome polyprotein OS=Plum pox potyvirus (strain D) OX=12212 PE=1 SV=2 Length=3141 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 56/308 (18%), Positives = 107/308 (35%), Gaps = 44/308 (14%) Query 494 IVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALF-------AYTKRNVIPTITQMNLK- 545 I + L+ A GK R Y+ ++S +D+++ K+ V + L+ Sbjct 2411 IFSALNMKAAVGALYSGKKRDYFKNVSDQDKESFVRASCKRLFMGKKGVWNGSLKAELRP 2470 Query 546 YAISAKNRAR--------TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGG 597 N+ R T+ G +C N QF+ L +G +KF GG Sbjct 2471 KEKVEANKTRSFTAAPIDTLLGGKVCVDDFNNQFYSLNLH-------CPWSVGMTKFRGG 2523 Query 598 WHNMLKTVYSDVENPHLMGWDYPKCDRAM--PNMLRIMASLVLARKHTTCCSLSHRFYRL 655 W +L+ + GW Y D + ++ + + VL + L Sbjct 2524 WDKLLRALPE--------GWIYCDADGSQFDSSLSPYLINAVLNIRLAFMEEWDIGEQML 2575 Query 656 ANECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNK 714 +N +++ + G++ K G +SG +T N++ I + + D + Sbjct 2576 SNLYTEIVYTPIATPDGTIVKKFKGNNSGQPSTVVDNTLMVILAMTYSLLKLGYHPDTHD 2635 Query 715 IADKYVRN------LQHRLYECLYRNRDVDTDFVNEFYAYLRK---HFSMMILSDDAVVC 765 +Y N H YE +Y + Y + K + +S V+ Sbjct 2636 CICRYFVNGDDLVLAVHPAYESIYDELQEHFSQLGLNYTFATKTENKEELWFMSHKGVL- 2694 Query 766 FNSTYASQ 773 ++ Y + Sbjct 2695 YDDMYIPK 2702 >sp|P21231|POLG_SBMVN Genome polyprotein OS=Soybean mosaic virus (strain N) OX=12223 PE=1 SV=2 Length=3066 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 49/277 (18%), Positives = 99/277 (36%), Gaps = 46/277 (17%) Query 454 DYYRYNLPT-------MCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPF 506 D+++YN P R + V +++ FD + + I ++L+ A Sbjct 2356 DFFKYNKPVVLNEVDFQSFERAVAGV-KLMMMEFDFKECVYVTDPDEIYDSLNMKAAVGA 2414 Query 507 NKWGKARLYYDSMSYEDQDALFA-------YTKRNVIPTITQMNLK---YAISAKNRA-- 554 GK + Y+ M D++ L Y ++ V + L+ + K R Sbjct 2415 QYKGKKQDYFSGMDSFDKERLLYLSCERLFYGEKGVWNGSLKAELRPIEKVQANKTRTFT 2474 Query 555 ----RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVE 610 T+ G +C N QF+ L +G +KFY GW +++++ Sbjct 2475 AAPIDTLLGAKVCVDDFNNQFYSLNLT-------CPWTVGMTKFYRGWDKLMRSLPDGWV 2527 Query 611 NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFY----RLANECAQVLSEM 666 H G + + L+L ++ L N A+++ Sbjct 2528 YCHADGSQFDS----------SLTPLLLNAVLDVRSFFMEDWWVGREMLENLYAEIVYTP 2577 Query 667 VMC-GGSLYVKPGGTSSGDATTAYANSVFNICQAVTA 702 ++ G+++ K G +SG +T N++ + + Sbjct 2578 ILAPDGTIFKKFRGNNSGQPSTVVDNTLMVVIAMYYS 2614 >sp|P17767|POLG_PPVRA Genome polyprotein OS=Plum pox potyvirus (strain Rankovic) OX=12214 PE=1 SV=2 Length=3140 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 56/308 (18%), Positives = 107/308 (35%), Gaps = 44/308 (14%) Query 494 IVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALF-------AYTKRNVIPTITQMNLK- 545 I + L+ A GK R Y+ ++S +D+++ K+ V + L+ Sbjct 2410 IFSALNMKAAVGALYSGKKRDYFKNVSDQDKESFVRASCKRLFMGKKGVWNGSLKAELRP 2469 Query 546 YAISAKNRAR--------TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGG 597 N+ R T+ G +C N QF+ L +G +KF GG Sbjct 2470 KEKVEANKTRSFTAAPIDTLLGGKVCVDDFNNQFYSLNLH-------CPWSVGMTKFRGG 2522 Query 598 WHNMLKTVYSDVENPHLMGWDYPKCDRAM--PNMLRIMASLVLARKHTTCCSLSHRFYRL 655 W +L+ + GW Y D + ++ + + VL + L Sbjct 2523 WDKLLRALPE--------GWIYCDADGSQFDSSLSPYLINAVLNIRLAFMEEWDIGEQML 2574 Query 656 ANECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNK 714 +N +++ + G++ K G +SG +T N++ I + + D + Sbjct 2575 SNLYTEIVYTPIATPDGTIVKKFKGNNSGQPSTVVDNTLMVILAMTYSLLKLGYHPDTHD 2634 Query 715 IADKYVRN------LQHRLYECLYRNRDVDTDFVNEFYAYLRK---HFSMMILSDDAVVC 765 +Y N H YE +Y + Y + K + +S V+ Sbjct 2635 CICRYFVNGDDLVLAVHPAYESIYDELQEHFSQLGLNYTFATKTENKEELWFMSHKGVL- 2693 Query 766 FNSTYASQ 773 ++ Y + Sbjct 2694 YDDMYIPK 2701 >sp|Q90069|POLG_SBMVG Genome polyprotein OS=Soybean mosaic virus (strain G2) OX=103931 PE=3 SV=1 Length=3066 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 48/288 (17%), Positives = 100/288 (35%), Gaps = 46/288 (16%) Query 436 ELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIV 495 K FF + +++ D+ + V+++ FD + + I Sbjct 2352 AFKRGFFKYNKPVVLNEVDFQSFERAVAG--------VKLMMMEFDFKECVYVTDPDEIY 2403 Query 496 NNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFA-------YTKRNVIPTITQMNLK--- 545 ++L+ A GK + Y+ M D++ L Y ++ V + L+ Sbjct 2404 DSLNMKAAVGAQYKGKKQDYFSGMDSFDKERLLYLSCERLFYGEKGVWNGSLKAELRPIE 2463 Query 546 YAISAKNRA------RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWH 599 + K R T+ G +C N QF+ L +G +KFY GW Sbjct 2464 KVQANKTRTFTAAPIDTLLGAKVCVDDFNNQFYSLNLT-------CPWTVGMTKFYRGWD 2516 Query 600 NMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFY----RL 655 +++++ H G + + L+L ++ L Sbjct 2517 KLMRSLPDGWVYCHADGSQFDS----------SLTPLLLNAVLDVRSFFMEDWWVGREML 2566 Query 656 ANECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNICQAVTA 702 N A+++ ++ G+++ K G +SG +T N++ + + Sbjct 2567 ENLYAEIVYTPILAPDGTIFKKFRGNNSGQPSTVVDNTLMVVIALYYS 2614 >sp|P29152|POLG_PSBMV Genome polyprotein OS=Pea seed-borne mosaic virus (strain DPD1) OX=31736 PE=1 SV=1 Length=3206 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 43/229 (19%), Positives = 81/229 (35%), Gaps = 34/229 (15%) Query 488 INANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYT-------KRNVIPTIT 540 + + I +L+ +A GK + Y++ + D++ + + K+ V Sbjct 2507 VTDAEAIFQSLNMNAAVGAMYQGKKKDYFEDFTAADRELIVKQSCERLFLGKKGVWNGSL 2566 Query 541 QMNLK---YAISAKNRA------RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGT 591 + L+ K R T+ G +C N F+ L+ +G Sbjct 2567 KAELRPIEKVHENKTRTFTAAPLDTLLGGKVCVDDFNNFFYSCHLR-------GPWTVGI 2619 Query 592 SKFYGGWHNMLKTVYSDVENPHLMGWDYPKCD--RAMPNMLRIMASLVLARKHTTCCSLS 649 +KFY GW+ L + GW Y D R ++ + + VL + Sbjct 2620 TKFYAGWNEFLSKLPD--------GWLYCDADGSRFDSSLTPYLINAVLELRLRFMEEWD 2671 Query 650 HRFYRLANECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNIC 697 L N +++ + GS+ K G +SG +T N++ I Sbjct 2672 AGEQMLKNLYTEIIYTPIATPDGSVIKKTKGNNSGQPSTVVDNTLMVIL 2720 >sp|Q6XW15|POLG_BTMV Genome polyprotein OS=Beet mosaic virus OX=114921 PE=3 SV=1 Length=3085 Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 53/275 (19%), Positives = 102/275 (37%), Gaps = 40/275 (15%) Query 454 DYYRYNLP-TMCDIRQLLF---VVEVVDKYFDCYDGGCINANQV--IVNNLDKSAGFPFN 507 D+ +Y P T+ + F V V++ D G C I ++L+ A Sbjct 2365 DFLKYAGPITVGVVNTNSFEDAVASVINMLEDLDYGECAYVTDPDSIFDSLNMKAAVGAL 2424 Query 508 KWGKARLYYDSMSYEDQDALF-------AYTKRNVIPTITQMNLK-YAISAKNRART--- 556 GK + Y++ ++ +++ L K V + L+ +N+ RT Sbjct 2425 YKGKKKEYFEQLNTTEREDLLRLSCERLYEGKMGVWNGSLKAELRPKEKLEQNKTRTFTA 2484 Query 557 -----VAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVEN 611 + G +C N +F+ LK +G +KFYGGW+ +L+ + Sbjct 2485 APIDTLLGGKVCVDDFNNRFYSLNLK-------GPWSVGMTKFYGGWNELLQKLPD---- 2533 Query 612 PHLMGWDYPKCDRAM--PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC 669 GW Y D + ++ + + V+ + L N +++ ++ Sbjct 2534 ----GWIYCDADGSQFDSSLTPYLINAVVQIREHFMEDWEIGRTMLRNFYTEIVYTPILT 2589 Query 670 -GGSLYVKPGGTSSGDATTAYANSVFNICQAVTAN 703 G++ K G +SG +T N++ I A Sbjct 2590 PDGTIVKKFKGNNSGQPSTVVDNTLMVILAMHYAM 2624 >sp|Q84934|POLG_PPVSK Genome polyprotein OS=Plum pox potyvirus (strain SK 68) OX=103927 PE=3 SV=1 Length=3140 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 54/285 (19%), Positives = 99/285 (35%), Gaps = 42/285 (15%) Query 494 IVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFA-------YTKRNVIPTITQMNLK- 545 I + L+ A GK R Y+ + S +D++ K+ V + L+ Sbjct 2410 IFSALNMKAAVGALYSGKKRDYFKNASEQDKEDFIKASCKRLFMGKKGVWNGSLKAELRP 2469 Query 546 YAISAKNRAR--------TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGG 597 N+ R T+ G +C N QF+ L +G +KF GG Sbjct 2470 KEKVEANKTRSFTAAPIDTLLGGKVCVDDFNNQFYSLNLH-------CPWSVGMTKFRGG 2522 Query 598 WHNMLKTVYSDVENPHLMGWDYPKCDRAM--PNMLRIMASLVLARKHTTCCSLSHRFYRL 655 W +L+ + GW Y D + ++ + + VL + L Sbjct 2523 WDKLLRALPD--------GWIYCDADGSQFDSSLSPYLINAVLNIRLAFMEEWDIGEQML 2574 Query 656 ANECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNK 714 +N +++ + G++ K G +SG +T N++ I A +LL + Sbjct 2575 SNLYTEIVYTPIATPDGTIVKKFKGNNSGQPSTVVDNTLMVIL----AMTYSLLKLGYHP 2630 Query 715 IADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILS 759 + + R + Y L++HFS + L+ Sbjct 2631 DTHECIC----RYFVNGDDLVLAVHPAYESMYDELQEHFSQLGLN 2671 >sp|P31999|POLG_LMV0 Genome polyprotein OS=Lettuce mosaic virus (strain 0 / isolate French) OX=117132 PE=2 SV=3 Length=3255 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 68/428 (16%), Positives = 139/428 (32%), Gaps = 91/428 (21%) Query 475 VVDKYFDCYDGGC--INANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYT- 531 V+ + GC + + I L+ A GK R Y++ E+++ + + Sbjct 2554 VIKRLERLGFSGCEYVTDEEAIFQALNMKAAVGALYSGKKRDYFEGYGPEEKENILRESC 2613 Query 532 ---------------KRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLL 576 K + P M K + T+ +C N F+ K + Sbjct 2614 KRLYTGKFGVWNGSLKSELRPMEKVMANKTRVFTAAPLDTLLAGKVCVDDFNNYFYSKNI 2673 Query 577 KSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAM--PNMLRIMA 634 + A +G +KFYGGW+ +L + GW Y D + ++ + Sbjct 2674 E-------APWTVGMTKFYGGWNELLTKLPD--------GWVYCDADGSQFDSSLSPFLI 2718 Query 635 SLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKP-GGTSSGDATTAYANSV 693 + VL + L N +++ ++ S VK G +SG +T N++ Sbjct 2719 NSVLRIRLKFMEDWDLGEQMLKNLYTEIVYTAILTPDSTIVKKFKGNNSGQPSTVVDNTL 2778 Query 694 FNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHF 753 V ++ +K+ F +E + K+F Sbjct 2779 ---------MVVLAMTYTLHKL------------------------GFEDEEQDSMCKYF 2805 Query 754 SMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFC 813 + DD ++ + S + F+ + F S + T+ E Sbjct 2806 ---VNGDDLIIAIKPEHESL-----LDQFQ-------HCFKSLGLNYDFNSRTRKKEELW 2850 Query 814 SQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDA--YPLTK 871 +K+ +++P +P RI+ ++ +E + I++ Y Sbjct 2851 FMSHCGIKKDG--IFIPKLEPERIVS---ILEWDRSDQPVHRLEAICAAMIESWGYDKLT 2905 Query 872 HPNQEYAD 879 H +++ Sbjct 2906 HEIRKFYK 2913 >sp|Q8JV21|POLG_LJUV1 Genome polyprotein OS=Ljunganvirus 1 OX=1001061 PE=1 SV=1 Length=2253 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 60/175 (34%), Gaps = 15/175 (9%) Query 545 KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAAT--RGATVVIGTSKFYGGWHNML 602 K A+ + R + SI + R L ++I T + + +G + + W M+ Sbjct 1955 KKEKIAQGKTRCIEACSIDYVIAYRVVMSSLYEAIYQTPAQELGLAVGMNP-WTDWDPMI 2013 Query 603 KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQV 662 +V P+ G DY D ++ L +LA H ++ + N V Sbjct 2014 -----NVLQPYNYGLDYSSYDGSLSEQLMRYGVEILAYCHEQPEAVMILHEPVINSQHLV 2068 Query 663 LSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIAD 717 + E+ GG SG T NS+ N+ L + I Sbjct 2069 MDEIWHVN-------GGMPSGAPCTTVLNSICNLLVCTYLAYEQSLDIEVLPIVY 2116 >sp|P19724|POLG_PRSVW Genome polyprotein (Fragment) OS=Papaya ringspot virus (strain W) OX=12207 PE=3 SV=1 Length=675 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 50/278 (18%), Positives = 97/278 (35%), Gaps = 40/278 (14%) Query 556 TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM 615 T+ G +C N F+ K ++ +G +KFY GW L+ + D Sbjct 46 TLLGAKVCVDDFNNWFYSKNME-------CPWTVGMTKFYKGWDEFLR-KFPD------- 90 Query 616 GWDYPKCDRA------MPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC 669 GW Y D + P +L + S+ L L N ++ ++ Sbjct 91 GWVYCDADGSQFDSSLTPYLLNAVLSIRLWAMED----WDIGEQMLKNLYGEITYTPILT 146 Query 670 -GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNK------IADKYVRN 722 G++ K G +SG +T N++ + A A T + I + Sbjct 147 PDGTIVKKFKGNNSGQPSTVVDNTLMVLITMYYALRKAGYDTKTQEDMCVFYINGDDLCI 206 Query 723 LQHRLYECLYRNRDVDTDFVNEFYAYLRKHF---SMMILSDDAVV---CFNSTYASQGLV 776 H +E + + + Y + ++H ++ +S ++ + + +V Sbjct 207 AIHPDHEHVLDSFSRSFAELGLKYDFTQRHRNKQNLWFMSHRGILIDDIYIPKLEPERIV 266 Query 777 ASIKNFKSVL--YYQNNVFMSEAKCWTETDLTKGPHEF 812 A ++ KS L + + + + W DLT F Sbjct 267 AILEWDKSKLPEHRLEAITAAMIESWGYGDLTHQIRRF 304 >sp|P36286|POLG_SMSV1 Genome polyprotein OS=San Miguel sea lion virus serotype 1 OX=36406 GN=ORF1 PE=3 SV=3 Length=1879 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 32/178 (18%), Positives = 66/178 (37%), Gaps = 12/178 (7%) Query 553 RARTVAGVSICSTMTNRQFHQKLLKSIAATRG-ATVVIGTSKFYGGWHNMLKTVYSDVEN 611 + R + G + + R +++ +SI A + +G + + K + + Sbjct 1533 KRRLIWGCDVGVSTVCRAAFKRVSESIMANHALGFIQVGINMDGPAVEDPFKRLERPKHD 1592 Query 612 PHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMV-MCG 670 + + DY K D P + + +L + + + + CA + S + + Sbjct 1593 RYCV--DYSKWDSTQPPKVTSQSIDILRH-------FTDKSPIVDSACATLKSNPIGIFN 1643 Query 671 GSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLY 728 G + GG SG T+ NS+ N C V + V L G ++ ++ Y Sbjct 1644 GVAFKVAGGLPSGMPLTSIINSL-NHCLMVGSAVVKALEDSGVQVTWNIFDSMDLFTY 1700 >sp|Q02963|POLG_PVYHU Genome polyprotein OS=Potato virus Y (strain Hungarian) OX=31739 PE=3 SV=1 Length=3061 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 47/258 (18%), Positives = 91/258 (35%), Gaps = 26/258 (10%) Query 454 DYYRYNLP---TMCDIRQLLFVVEVVDKYFDCY---DGGCINANQVIVNNLDKSAGFPFN 507 D +Y+ P + D + V Y + I Q I L+ A Sbjct 2347 DIMKYSKPIDVGIVDCDAFEEAINRVIIYLQVHGFQKCNYITDEQEIFKALNMKAAVGAM 2406 Query 508 KWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQM---NLKYAISAK-----NRARTVAG 559 GK + Y++ + D++ + + + + +LK + K N+ RT Sbjct 2407 YGGKKKDYFEHFTEADKEEIVMQSCPRLYKGSLGIWNGSLKAELRCKEKILANKTRTFTA 2466 Query 560 VSICSTMTNRQFHQKLLKSIAATRGATVV--IGTSKFYGGWHNMLKTVYSDVENPHLMGW 617 + + + + ++ +G +KFYGGW +L+ + EN Sbjct 2467 APLDTLLGGKVCVDDFNNQF-YSKNIECCWTVGMTKFYGGWDRLLRRLP---ENWVYCDA 2522 Query 618 DYPKCDRA-MPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC-GGSLYV 675 D + D + P ++ VL + T L N +++ + G++ Sbjct 2523 DGSQFDSSLTPYLINA----VLIIRSTYMEDWDLGLQMLRNLYTEIIYTPISTPDGTIVK 2578 Query 676 KPGGTSSGDATTAYANSV 693 K G +SG +T NS+ Sbjct 2579 KFRGNNSGQPSTVVDNSL 2596 >sp|Q9WAL8|POL1_SDVS5 RNA1 polyprotein OS=Satsuma dwarf virus (isolate Satsuma mandarin/Japan/S-58/1977) OX=650481 PE=3 SV=1 Length=2081 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 52/154 (34%), Gaps = 7/154 (5%) Query 544 LKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLK 603 K + K R + I + R + + A +G + + W +L Sbjct 1615 KKVRVQPKTRIFEILPFQINI-IIRRYLMFWMQLLMVAHDELPSKVGINVYSESWDRLLG 1673 Query 604 TVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL 663 H G DY D + P R++ ++ + + N VL Sbjct 1674 RHTR--LANHFTG-DYSGFDTSTP---RVLVYAIIDKINELADDGEVNQRTRRNIIRFVL 1727 Query 664 SEMVMCGGSLYVKPGGTSSGDATTAYANSVFNIC 697 + ++ G LY GGT SG A T NSV N Sbjct 1728 NRYLISDGVLYEIHGGTPSGFAPTVMINSVVNEF 1761 >sp|O11436|POLG_RGMVD Genome polyprotein OS=Ryegrass mosaic virus (isolate Denmark/Danish) OX=652106 PE=1 SV=1 Length=3086 Score = 44.3 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 50/270 (19%), Positives = 99/270 (37%), Gaps = 26/270 (10%) Query 445 DGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGC-----INANQVIVNNLD 499 + A + D Y +P + ++ F V D Y+ D G I I ++++ Sbjct 2305 NREAFVKDITKYDTEIP-IGNLSITDFENAVEDTYYILKDSGIEQCNYITDAIPIFDSMN 2363 Query 500 KSAGFPFNKWGKARLYYDSMSYEDQDALF---AYTKRNVIPTITQMNLKYAISAK----- 551 A GK + Y+++ + + + + R I +LK + +K Sbjct 2364 MKAATGALYGGKKKDYFENYTDDMKQNILKESYIRLREGKMGIWNGSLKAELRSKEKVEA 2423 Query 552 NRARTVAGVSICSTMTNRQFHQKLLKSI-AATRGATVVIGTSKFYGGWHNMLKTVYSDVE 610 N+ R + + + + AA +G +KF+G W++ L + Sbjct 2424 NKTRVFTAAPLDTLLAGKGCVDDFNNQFYAAHLKGPWTVGITKFFGRWNDFLSELPP--- 2480 Query 611 NPHLMGWDYPKCD--RAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVM 668 GWDY D R ++ + + VL + + + L N +++ + Sbjct 2481 -----GWDYFDADGSRFDSSLTPFLLNAVLNIRKKFMINWAFGQRCLGNLYTEIIYTPIA 2535 Query 669 C-GGSLYVKPGGTSSGDATTAYANSVFNIC 697 GS+ K G +SG +T N++ I Sbjct 2536 TPDGSVVKKMRGNNSGQPSTVVDNTIMVII 2565 >sp|Q9DUN3|POLG_VESVA Genome polyprotein OS=Vesicular exanthema of swine virus serotype A48 (isolate Swine/United States/A48/1948) OX=85617 GN=ORF1 PE=3 SV=1 Length=1881 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 66/178 (37%), Gaps = 12/178 (7%) Query 553 RARTVAGVSICSTMTNRQFHQKLLKSIAATRG-ATVVIGTSKFYGGWHNMLKTVYSDVEN 611 + R + G + + +++ +SI A + +G + ++ K + + Sbjct 1535 KRRLIWGCDVGVSTVCAAAFKRVSESIMANHALGFIQVGINMDGPAVEDLFKRLERPKHD 1594 Query 612 PHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMV-MCG 670 + + DY K D P + + +L + + + + CA + S + + Sbjct 1595 RYCV--DYSKWDSTQPPKVTSQSIDILRH-------FTDKSPIVDSACATLKSNPIGIFN 1645 Query 671 GSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLY 728 G + GG SG T+ NS+ N C V + V L G ++ ++ Y Sbjct 1646 GVAFKVAGGLPSGMPLTSIINSL-NHCLMVGSAVVKALEDSGVRVTWNIFDSMDLFTY 1702 >sp|P04517|POLG_TEV Genome polyprotein OS=Tobacco etch virus OX=12227 PE=1 SV=1 Length=3054 Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 79/222 (36%), Gaps = 20/222 (9%) Query 488 INANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALF-------AYTKRNVIPTIT 540 I + I + L+ A GK + ++ ++Q+A+ K + Sbjct 2391 ITDPEEIFSALNMKAAMGALYKGKKKEALSELTLDEQEAMLKASCLRLYTGKLGIWNGSL 2450 Query 541 QMNLK-YAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAA-TRGATVVIGTSKFYGGW 598 + L+ N+ RT I + + + A +G +KFY GW Sbjct 2451 KAELRPIEKVENNKTRTFTAAPIDTLLAGKVCVDDFNNQFYDLNIKAPWTVGMTKFYQGW 2510 Query 599 HNMLKTVYSDVENPHLMGWDYPKCDRAM--PNMLRIMASLVLARKHTTCCSLSHRFYRLA 656 + +++ + S GW Y D + ++ + + VL + L Sbjct 2511 NELMEALPS--------GWVYCDADGSQFDSSLTPFLINAVLKVRLAFMEEWDIGEQMLR 2562 Query 657 NECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNIC 697 N +++ ++ G++ K G +SG +T N++ I Sbjct 2563 NLYTEIVYTPILTPDGTIIKKHKGNNSGQPSTVVDNTLMVII 2604 >sp|E5D8F2|POLG_HRV15 Genome polyprotein OS=Human rhinovirus C (strain C15) OX=1418033 PE=1 SV=1 Length=2153 Score = 43.9 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 39/200 (20%), Positives = 67/200 (34%), Gaps = 20/200 (10%) Query 501 SAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRN--VIPTITQMNLKYAIS---AKNRAR 555 SAGFP+ G + + +D L + +P +T + + K + R Sbjct 1808 SAGFPYVTMGIKKKDIVNKVTKDVTKLQEMIDKYGIDLPYVTYLKDELRAPEKIKKGKTR 1867 Query 556 TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM 615 + SI T R L A G V+ S +Y+ ++ L+ Sbjct 1868 AIEAASINDTTHFRMVFGNLFSVFHANPG---VLTGSAVGCNPDVFWSQMYACMDG-ELL 1923 Query 616 GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV 675 +DY D ++ + + L + H RL N + +Y Sbjct 1924 AFDYTNYDGSLHPI--WFKA--LGKVLDNLGFPGHLVNRLCNTTH-------IFKNLIYT 1972 Query 676 KPGGTSSGDATTAYANSVFN 695 GG SG T+ N++ N Sbjct 1973 VEGGMPSGICGTSIFNTMIN 1992 >sp|O73556|POLG_HPE2W Genome polyprotein OS=Human parechovirus 2 (strain Williamson) OX=122962 PE=3 SV=1 Length=2179 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 47/249 (19%), Positives = 80/249 (32%), Gaps = 35/249 (14%) Query 488 INANQVIVNNLDKSAGFPFNKWGKARLYYDSMSY----EDQDALFAYTKRNVIPTITQMN 543 + + V +L SAG+ F K G + + + L N++ Q+ Sbjct 1810 LGTSHVNSMDLSTSAGYSFVKSGYKKKDLICLEPFSVSPMLEKLVQEKFHNLLKG-NQIT 1868 Query 544 LKYAISAKN-----------RARTVAGVSICSTMTNRQFHQKLLKSIAAT----RGATVV 588 + K+ + R + I + R ++ I T G V Sbjct 1869 TIFNTCLKDELRKLDKIATGKTRCIEACEIDYCIVYRMIMMEIYDKIYQTPCYYSGLAVG 1928 Query 589 IGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSL 648 I Y WH M+ + N + DY + D ++ +ML A VLA H + + Sbjct 1929 INP---YRDWHFMINAL-----NDYNYEMDYSQYDGSLSSMLLWEAVQVLAYCHDSPDLV 1980 Query 649 SHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALL 708 + + V +E + GG SG T NS+ N+ + Sbjct 1981 MQLHKPVIDSDHVVFNERWLIH-------GGMPSGSPCTTVLNSLCNLMMCIYTTNLISP 2033 Query 709 STDGNKIAD 717 D I Sbjct 2034 GIDCLPIVY 2042 >sp|Q66474|POLG_EC06C Genome polyprotein OS=Echovirus 6 (strain Charles) OX=103913 PE=1 SV=3 Length=2191 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 39/200 (20%), Positives = 71/200 (36%), Gaps = 17/200 (9%) Query 501 SAGFPFNKWGKARLYYDSMSYEDQDAL--FAYTKRNVIPTITQMNLKYAIS---AKNRAR 555 SAG+P+ G + S D L +P +T + + + AK ++R Sbjct 1844 SAGYPYVALGIKKRDILSKKTRDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKGKSR 1903 Query 556 TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM 615 + S+ ++ RQ L K+ G I T G ++ + + + HL+ Sbjct 1904 LIEASSLNDSVAMRQTFGNLYKAFHQNPG----IVTGSAVGCDPDLFWSKIPVMLDGHLI 1959 Query 616 GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV 675 +DY D ++ + A L L + + + + Y Sbjct 1960 AFDYSGYDASLSPV--WFACLKLLLEKLGYTHKETNYIDYLCNSHHLYRD------KHYF 2011 Query 676 KPGGTSSGDATTAYANSVFN 695 GG SG + T+ NS+ N Sbjct 2012 VRGGMPSGCSGTSIFNSMIN 2031 >sp|Q66578|POLG_HPE1H Genome polyprotein OS=Human parechovirus 1 (strain Harris) OX=103911 PE=1 SV=1 Length=2180 Score = 43.1 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 46/249 (18%), Positives = 80/249 (32%), Gaps = 35/249 (14%) Query 488 INANQVIVNNLDKSAGFPFNKWGKARLYYDSMSY----EDQDALFAYTKRNVIPTITQMN 543 + + V +L SAG+ F K G + + + L N++ Q+ Sbjct 1811 LGTSHVNSMDLSTSAGYSFVKSGYKKKDLICLEPFSVAPLLERLVQDKFHNLLKG-NQIT 1869 Query 544 LKYAISAKN-----------RARTVAGVSICSTMTNRQFHQKLLKSIAAT----RGATVV 588 + K+ + R + + + R ++ I T G V Sbjct 1870 TTFNTCLKDELRKLDKIASGKTRCIEACEVDYCIVYRMIMMEIYDKIYQTPCYYSGLAVG 1929 Query 589 IGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSL 648 I Y WH M+ + N + DY + D ++ +ML A VLA H + + Sbjct 1930 INP---YKDWHFMINAL-----NDYNYEMDYSQYDGSLSSMLLWEAVEVLAYCHDSPDLV 1981 Query 649 SHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALL 708 + + V +E + GG SG T NS+ N+ + Sbjct 1982 MQLHKPVIDSDHVVFNERWLIH-------GGMPSGSPCTTVLNSLCNLMMCIYTTNLISP 2034 Query 709 STDGNKIAD 717 D I Sbjct 2035 GIDCLPIVY 2043 >sp|Q96725|POLG_EBHSG Genome polyprotein OS=European brown hare syndrome virus (strain GD) OX=316979 GN=ORF1 PE=3 SV=1 Length=2334 Score = 43.1 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 45/250 (18%), Positives = 83/250 (33%), Gaps = 25/250 (10%) Query 550 AKNRARTVAGVSICSTM-TNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSD 608 + + R + G ++ + FH K R + +G M+ + S Sbjct 1427 KEGKKRLLWGCNVGVALCAAAVFHNLCFKLKTVARFGPIAVGIDMTSRDVDVMITQLTSK 1486 Query 609 VENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVM 668 + + DY K D M + +A +LA CC + + L V+ Sbjct 1487 AGDFLCL--DYSKWDSTMSPCVVRLAIDILAD----CCEQTELTKSVVLTLKS-LPMTVL 1539 Query 669 CGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLY 728 + K G SG T+ NS+ + +A V G ++ Y + +Y Sbjct 1540 DAMIVPTKR-GLPSGMPFTSVINSICHWLLW-SAAVYKACDEIGLFCSNLY-EDAPFFVY 1596 Query 729 --ECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVL 786 + +Y + V+ A L L D + + T A + + K + Sbjct 1597 GDDGVY---AMTPMMVSLLPAILDN------LRDYGL---SPTAADKTEFIDVCPLKDIS 1644 Query 787 YYQNNVFMSE 796 + + MSE Sbjct 1645 FLKRKFVMSE 1654 >sp|Q9YID8|POLG_HPEV5 Genome polyprotein OS=Human parechovirus 5 (strain CT86-6760) OX=122961 PE=3 SV=1 Length=2188 Score = 42.7 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 69/210 (33%), Gaps = 26/210 (12%) Query 512 ARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQF 571 +++ + +F ++ + + ++ A + R + + + R Sbjct 1864 QDKFHNLLKGNQITTIFNTCLKDELRKLDKI-------AAGKTRCIEACEVDYCIVYRMI 1916 Query 572 HQKLLKSIAAT----RGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMP 627 ++ I T G V I Y WH M+ + N + DY + D ++ Sbjct 1917 MMEIYDKIYQTPCYYSGLAVGINP---YKDWHFMINAL-----NDYNYEMDYSQYDGSLS 1968 Query 628 NMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATT 687 +ML A VLA H + + + + V +E + GG SG T Sbjct 1969 SMLLWEAVEVLAYCHDSPDLVMQLHKPVIDSDHVVFNERWLIH-------GGMPSGSPCT 2021 Query 688 AYANSVFNICQAVTANVNALLSTDGNKIAD 717 NS+ N+ + D I Sbjct 2022 TVLNSLCNLMMCIYTTNLISPGVDCLPIVY 2051 >sp|O41174|POLG_PEV9U Genome polyprotein OS=Porcine enterovirus 9 (strain UKG/410/73) OX=64141 PE=1 SV=3 Length=2168 Score = 42.7 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 38/203 (19%), Positives = 72/203 (35%), Gaps = 24/203 (12%) Query 501 SAGFPFNKWGKARLYYDSMSYEDQD----ALFAYTKRNVIPTITQM---NLKYAISAKNR 553 SAG+P+ G + D ++ E +D +P +T + K + Sbjct 1822 SAGYPYVTMGIKKR--DILNKETRDVKKMQECIDKYGLNLPMVTYIKDELRSKEKVKKGK 1879 Query 554 ARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPH 613 +R + S+ ++ R + L K+ G G + + + + Sbjct 1880 SRLIEASSLNDSVAMRCYFGNLYKAFHQNPGTLTGCAV----GCDPDTFWSKIPVMMDGE 1935 Query 614 LMGWDYPKCDRAM-PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGS 672 L G+DY D ++ P M + + +VL + + + N C + Sbjct 1936 LFGFDYTAYDASLSPLMFQAL-QMVLEKI-----GFGEGKHFIDNLCYS----HHLFRDK 1985 Query 673 LYVKPGGTSSGDATTAYANSVFN 695 Y GG SG + T+ NS+ N Sbjct 1986 YYFVKGGMPSGCSGTSIFNSMIN 2008 >sp|P18247|POLG_PVYN Genome polyprotein OS=Potato virus Y (strain N) OX=12219 PE=1 SV=2 Length=3063 Score = 42.7 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 29/146 (20%), Positives = 55/146 (38%), Gaps = 12/146 (8%) Query 552 NRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVV--IGTSKFYGGWHNMLKTVYSDV 609 N+ RT + + + + ++ +G +KFYGGW +L+ + Sbjct 2461 NKTRTFTAAPLDTLLGGKVCVDDFNNQF-YSKNIECCWTVGMTKFYGGWDKLLRRLP--- 2516 Query 610 ENPHLMGWDYPKCDRA-MPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVM 668 EN D + D + P ++ VL + T L N +++ + Sbjct 2517 ENWVYCDADGSQFDSSLTPYLINA----VLTIRSTYMEDWDVGLQMLRNLYTEIVYTPIS 2572 Query 669 C-GGSLYVKPGGTSSGDATTAYANSV 693 G++ K G +SG +T NS+ Sbjct 2573 TPDGTIVKKFRGNNSGQPSTVVDNSL 2598 >sp|Q66849|POLG_EC09H Genome polyprotein OS=Echovirus 9 (strain Hill) OX=103915 PE=3 SV=3 Length=2193 Score = 42.3 bits (98), Expect = 0.026, Method: Composition-based stats. Identities = 39/200 (20%), Positives = 71/200 (36%), Gaps = 17/200 (9%) Query 501 SAGFPFNKWGKARLYYDSMSYEDQDAL--FAYTKRNVIPTITQMNLKYAIS---AKNRAR 555 SAG+P+ G + S D L +P +T + + + AK ++R Sbjct 1846 SAGYPYVALGIKKRDILSKKTRDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKGKSR 1905 Query 556 TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM 615 + S+ ++ RQ L K+ G I T G ++ + + + HL+ Sbjct 1906 LIEASSLNDSVAMRQTFGNLYKTFHLNPG----IVTGSASGCDPDLFWSKIPVMLDGHLI 1961 Query 616 GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV 675 +DY D ++ + A L L + + + + Y Sbjct 1962 AFDYSGYDASLSPV--WFACLKLLLEKLGYSHKETNYIDYLCNSHHLYRD------KHYF 2013 Query 676 KPGGTSSGDATTAYANSVFN 695 GG SG + T+ NS+ N Sbjct 2014 VRGGMPSGCSGTSIFNSMIN 2033 >sp|P21404|POLG_CXA9 Genome polyprotein OS=Coxsackievirus A9 (strain Griggs) OX=12068 PE=1 SV=4 Length=2201 Score = 42.3 bits (98), Expect = 0.028, Method: Composition-based stats. Identities = 41/200 (21%), Positives = 71/200 (36%), Gaps = 17/200 (9%) Query 501 SAGFPFNKWGKARLYYDSMSYEDQDAL--FAYTKRNVIPTITQMNLKYAIS---AKNRAR 555 SAG+P+ G + S D L +P IT + + + AK ++R Sbjct 1854 SAGYPYVALGIKKRDILSKKTRDLTKLKECMDKYGLNLPMITYVKDQLRSAEKVAKGKSR 1913 Query 556 TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM 615 + S+ ++ RQ L K+ G I T G ++ + + N HL+ Sbjct 1914 LIEASSLNDSVAMRQTFGNLYKTFHLNPG----IVTGSAVGCDPDLFWSKIPVMLNGHLI 1969 Query 616 GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV 675 +DY D ++ + A L L + + + + Y Sbjct 1970 AFDYSGYDASLSPV--WFACLKLLLEKLGYSHKETNYIDYLCNSHHLYRD------KHYF 2021 Query 676 KPGGTSSGDATTAYANSVFN 695 GG SG + T+ NS+ N Sbjct 2022 VRGGMPSGCSGTSIFNSMIN 2041 >sp|Q9WN78|POLG_EC30B Genome polyprotein OS=Echovirus 30 (strain Bastianni) OX=176284 PE=1 SV=3 Length=2194 Score = 42.3 bits (98), Expect = 0.028, Method: Composition-based stats. Identities = 39/200 (20%), Positives = 72/200 (36%), Gaps = 17/200 (9%) Query 501 SAGFPFNKWGKARLYYDSMSYEDQDAL--FAYTKRNVIPTITQMNLKYAIS---AKNRAR 555 SAG+P+ G + S +D L +P +T + + + AK ++R Sbjct 1847 SAGYPYVALGIKKRDILSKKTKDLAKLKECMDKYGLNLPMVTYVKDELRSAEKVAKGKSR 1906 Query 556 TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM 615 + S+ ++ RQ L K+ G I T G ++ + + + HL+ Sbjct 1907 LIEASSLNDSVAMRQTFGNLYKTFHMNPG----IVTGSAVGCDPDLFWSKIPVMLDGHLI 1962 Query 616 GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV 675 +DY D ++ + A L L + + + + Y Sbjct 1963 AFDYSGYDASLSPV--WFACLKLLLEKLGYSHKETNYIDYLCNSHHLYRD------KHYF 2014 Query 676 KPGGTSSGDATTAYANSVFN 695 GG SG + T+ NS+ N Sbjct 2015 VRGGMPSGCSGTSIFNSMIN 2034 >sp|Q76L40|POL1_BBWVS RNA1 polyprotein OS=Broad bean wilt virus 1 (strain Spinach/United States/ATCC PV-132/1963) OX=649895 GN=RNA1 PE=3 SV=1 Length=1842 Score = 42.0 bits (97), Expect = 0.032, Method: Composition-based stats. Identities = 28/158 (18%), Positives = 51/158 (32%), Gaps = 8/158 (5%) Query 551 KNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVE 610 K+R TV +S ++F + + +G + + W + + + Sbjct 1359 KSRLFTVLPMSYNLA-IRKKFLNFVRFIMKRRDVLPCQVGINPYSRQWGKVADRLLE--K 1415 Query 611 NPHLMGWDYPKCDRAMPNMLRI-MASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC 669 ++ DY + D +P + + +A + T + C S +C Sbjct 1416 GNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGETGAEREQTKNLMLACC----SRYAIC 1471 Query 670 GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNAL 707 G LY G SG T NS+ N A Sbjct 1472 GRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCF 1509 >sp|Q9QL88|POLG_CXB6S Genome polyprotein OS=Coxsackievirus B6 (strain Schmitt) OX=231474 PE=1 SV=4 Length=2184 Score = 42.0 bits (97), Expect = 0.033, Method: Composition-based stats. Identities = 39/200 (20%), Positives = 72/200 (36%), Gaps = 17/200 (9%) Query 501 SAGFPFNKWGKARLYYDSMSYEDQDAL--FAYTKRNVIPTITQMNLKYAIS---AKNRAR 555 SAG+P+ G + S +D L +P +T + + + AK ++R Sbjct 1837 SAGYPYVALGIKKRDILSKKSKDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKGKSR 1896 Query 556 TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM 615 + S+ ++ RQ L K+ G I T G ++ + + + HL+ Sbjct 1897 LIEASSLNDSVAMRQTFGNLYKTFHLNPG----IVTGSAVGCDPDLFWSKIPVMLDGHLI 1952 Query 616 GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV 675 +DY D ++ + A L L + + + + Y Sbjct 1953 AFDYSGYDASLSPV--WFACLKLLLEKLGYTHKETNYIDYLCNSHHLYRD------KHYF 2004 Query 676 KPGGTSSGDATTAYANSVFN 695 GG SG + T+ NS+ N Sbjct 2005 VRGGMPSGCSGTSIFNSMIN 2024 >sp|Q86117|POLG_RHDVS Genome polyprotein OS=Rabbit hemorrhagic disease virus (strain SD) OX=314535 GN=ORF1 PE=3 SV=1 Length=2344 Score = 42.0 bits (97), Expect = 0.034, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 9/149 (6%) Query 571 FHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNML 630 FH K R + +G ++ + S + + DY K D M + Sbjct 1456 FHNICYKLKMVARFGPIAVGVDMTSRDVDVIINNLTSKASDFLCL--DYSKWDSTMSPCV 1513 Query 631 RIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYA 690 +A +LA CC + + M + + G SG T+ Sbjct 1514 VRLAIDILAD----CCEQTELTKSVVLTLKS--HPMTILDAMIVQTKRGLPSGMPFTSVI 1567 Query 691 NSVFNICQAVTANVNALLSTDGNKIADKY 719 NS+ + +A V + G ++ Y Sbjct 1568 NSICHWLLW-SAAVYKSCAEIGLHCSNLY 1595 >sp|P27410|POLG_RHDVF Genome polyprotein OS=Rabbit hemorrhagic disease virus (strain Rabbit/Germany/FRG/1989) OX=314536 GN=ORF1 PE=1 SV=1 Length=2344 Score = 42.0 bits (97), Expect = 0.034, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 9/149 (6%) Query 571 FHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNML 630 FH K R + +G ++ + S + + DY K D M + Sbjct 1456 FHNICYKLKMVARFGPIAVGVDMTSRDVDVIINNLTSKASDFLCL--DYSKWDSTMSPCV 1513 Query 631 RIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYA 690 +A +LA CC + + M + + G SG T+ Sbjct 1514 VRLAIDILAD----CCEQTELTKSVVLTLKS--HPMTILDAMIVQTKRGLPSGMPFTSVI 1567 Query 691 NSVFNICQAVTANVNALLSTDGNKIADKY 719 NS+ + +A V + G ++ Y Sbjct 1568 NSICHWLLW-SAAVYKSCAEIGLHCSNLY 1595 >sp|Q89273|POLG_RHDVB Genome polyprotein OS=Rabbit hemorrhagic disease virus (strain BS89) OX=314537 GN=ORF1 PE=1 SV=1 Length=2344 Score = 42.0 bits (97), Expect = 0.034, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 9/149 (6%) Query 571 FHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNML 630 FH K R + +G ++ + S + + DY K D M + Sbjct 1456 FHNICYKLKMVARFGPIAVGVDMTSRDVDVIINNLTSKASDFLCL--DYSKWDSTMSPCV 1513 Query 631 RIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYA 690 +A +LA CC + + M + + G SG T+ Sbjct 1514 VRLAIDILAD----CCEQTELTKSVVLTLKS--HPMTILDAMIVQTKRGLPSGMPFTSVI 1567 Query 691 NSVFNICQAVTANVNALLSTDGNKIADKY 719 NS+ + +A V + G ++ Y Sbjct 1568 NSICHWLLW-SAAVYKSCAEIGLHCSNLY 1595 >sp|Q86119|POLG_RHDVA Genome polyprotein OS=Rabbit hemorrhagic disease virus (strain AST89) OX=314538 GN=ORF1 PE=1 SV=2 Length=2344 Score = 42.0 bits (97), Expect = 0.034, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 9/149 (6%) Query 571 FHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNML 630 FH K R + +G ++ + S + + DY K D M + Sbjct 1456 FHNICYKLKMVARFGPIAVGVDMTSRDVDVIINNLTSKASDFLCL--DYSKWDSTMSPCV 1513 Query 631 RIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYA 690 +A +LA CC + + M + + G SG T+ Sbjct 1514 VRLAIDILAD----CCEQTELTKSVVLTLKS--HPMTILDAMIVQTKRGLPSGMPFTSVI 1567 Query 691 NSVFNICQAVTANVNALLSTDGNKIADKY 719 NS+ + +A V + G ++ Y Sbjct 1568 NSICHWLLW-SAAVYKSCAEIGLHCSNLY 1595 >sp|Q65900|POLG_CX16G Genome polyprotein OS=Coxsackievirus A16 (strain G-10) OX=69159 PE=1 SV=3 Length=2193 Score = 42.0 bits (97), Expect = 0.035, Method: Composition-based stats. Identities = 42/238 (18%), Positives = 78/238 (33%), Gaps = 17/238 (7%) Query 484 DGGCINANQVIVNNLDKSAGFPFNKWG-KARLYYDSMSYEDQDALFAYTKRNV-IPTITQ 541 + C + +L SAG+P++ G K R D + + F K + +P T Sbjct 1829 EEACYGTENLEAIDLHTSAGYPYSALGIKKRDILDPTTRDVSKMKFYMDKYGLDLPYSTY 1888 Query 542 MNLKYA---ISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGW 598 + + K ++R + S+ ++ R L ++ A G I S Sbjct 1889 VKDELRSIDKIKKGKSRLIEASSLNDSVYLRMAFGHLYETFHANPGT---ITGSAVGCNP 1945 Query 599 HNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANE 658 + + L +DY D ++ + +L L + + N Sbjct 1946 DTFWSKLPILLPGS-LFAFDYSGYDASLSPV--WFRALELVLREVGYSEEAVSLIEGINH 2002 Query 659 CAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA 716 V C GG SG + T+ NS+ N T + D +++ Sbjct 2003 THHVYRNKTYCV------LGGMPSGCSGTSIFNSMINNIIIRTLLIKTFKGIDLDELN 2054 >sp|P08291|POLG_CXB1J Genome polyprotein OS=Coxsackievirus B1 (strain Japan) OX=103902 PE=3 SV=3 Length=2182 Score = 42.0 bits (97), Expect = 0.038, Method: Composition-based stats. Identities = 39/200 (20%), Positives = 71/200 (36%), Gaps = 17/200 (9%) Query 501 SAGFPFNKWGKARLYYDSMSYEDQDAL--FAYTKRNVIPTITQMNLKYAIS---AKNRAR 555 SAG+P+ G + S D L +P +T + + + AK ++R Sbjct 1835 SAGYPYVALGIKKRDILSKKTRDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKGKSR 1894 Query 556 TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM 615 + S+ ++ RQ L K+ G I T G ++ + + + HL+ Sbjct 1895 LIEASSLNDSVAMRQTFGNLYKTFHLNPG----IVTGSAVGCDPDLFWSKIPVMLDGHLV 1950 Query 616 GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV 675 +DY D ++ + A L L + + + + Y Sbjct 1951 AFDYSGYDASLSPV--WFACLKLLLEKLGYSHKETNYIDYLCNSHHLYRD------KHYF 2002 Query 676 KPGGTSSGDATTAYANSVFN 695 GG SG + T+ NS+ N Sbjct 2003 VRGGMPSGCSGTSIFNSMIN 2022 >sp|Q8V736|POLG_CACV4 Genome polyprotein OS=Canine calicivirus (strain 48) OX=292348 GN=ORF1 PE=3 SV=1 Length=1929 Score = 42.0 bits (97), Expect = 0.039, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 87/233 (37%), Gaps = 26/233 (11%) Query 531 TKRNVIPTITQMNLKYAISAKNRA-----RTVAGVSICSTMTNRQFHQKLLKSIAATRG- 584 T+ IP Q+ LK + K++ R + G + + +++ +I A Sbjct 1558 TQGVPIPHEYQLGLKDELRPKDKIAVGKRRLIWGCDVGVAVVAASAFKEVSSAIMAMSEF 1617 Query 585 ATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMP-NMLRIMASLVLARKHT 643 + +G + + K +Y H DY K D P N+ R+ L+ +H Sbjct 1618 DFIQVGINMDGTAVETLYKRLY--TPGTHRYCVDYSKWDSTQPPNVTRMSLELL---RHF 1672 Query 644 TCCSLSHRFYRLANECAQVLSEMV--MCGGSLYVKPGGTSSGDATTAYANSVFNICQAVT 701 T S + + LS + GG + GG SG T+ NS+ N C V Sbjct 1673 TDKSP------VVDSAVATLSSPSIAVFGGVSFKTNGGLPSGMPLTSILNSL-NHCLLVG 1725 Query 702 ANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFS 754 + + +L + G + + L+ + +FV ++ + + FS Sbjct 1726 SAIIQVLESKGVDVNWNIYDTID--LFTYGDDGVYIVPNFV---HSVMPEVFS 1773 >sp|P89201|POLG_SPMMV Genome polyprotein OS=Sweet potato mild mottle virus (isolate Salazar) OX=652105 PE=2 SV=1 Length=3456 Score = 42.0 bits (97), Expect = 0.039, Method: Composition-based stats. Identities = 43/263 (16%), Positives = 87/263 (33%), Gaps = 21/263 (8%) Query 494 IVNNLDKSAGFPFNKWGKARLYYDSMSYE-------DQDALFAYTKRNVIPTITQMNLKY 546 I ++L+K + GK + ++ E + AL V + L++ Sbjct 2767 IFDDLNKKSSMGALYSGKKGQWMHGLTPEDAISLAVESYALLNSGHLGVWSGSLKAELRH 2826 Query 547 AISAKN-RARTVAGVSICSTMTNRQFHQKLLKSIAATR-GATVVIGTSKFYGGWHNMLKT 604 K + R G I + + + +G +KF GW+ + Sbjct 2827 VDKLKEGKTRVFTGAPIDTLLAGKILVDNFNNYFYKCHLQGPWTVGINKFNRGWNKLANY 2886 Query 605 VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS 664 D + D + D ++P ++ ++ + + L E V + Sbjct 2887 FNHD---WVFIDCDGSRFDSSIPPIMFNAVCMLRSVFGDLDPDENQTLSNLYTEI--VNT 2941 Query 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ 724 ++ G++ K G +SG +T N++ + A A+ + KYV N Sbjct 2942 PILTIEGNIIRKFRGNNSGQPSTVVDNTLILMI----AMEYAIAKVFVTRPDIKYVCNGD 2997 Query 725 HRLYECLYRNR--DVDTDFVNEF 745 L R+ + F + F Sbjct 2998 -DLLINCPRSTANAISEHFKDVF 3019 >sp|P36312|POL1_CPSMV RNA1 polyprotein OS=Cowpea severe mosaic virus (strain DG) OX=31716 PE=3 SV=1 Length=1858 Score = 41.6 bits (96), Expect = 0.040, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 58/158 (37%), Gaps = 10/158 (6%) Query 551 KNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVE 610 K R TV + + R+F + ++ + + +G + + W + ++ + Sbjct 1361 KTRCFTVLPMEYNL-VVRRKFLKFVVFIMKNRHRLSCQVGINPYGMEWSRLAMSLLE--K 1417 Query 611 NPHLMGWDYPKCD-RAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC 669 +++ DY D ++ +M+ ++ + R L C S +C Sbjct 1418 GNNILCCDYSSFDGLLTKQVMHLMSEMINELCGGSSRLKQQRTNLLMACC----SRYALC 1473 Query 670 GGSLYVKPGGTSSGDATTAYANSVFN--ICQAVTANVN 705 G ++ G SG T NS+FN + + + Sbjct 1474 KGEVWRVECGIPSGFPLTVICNSIFNELLVRYSYIKIC 1511 >sp|P12916|POLG_HRV1B Genome polyprotein OS=Human rhinovirus 1B OX=2777147 PE=1 SV=3 Length=2157 Score = 41.6 bits (96), Expect = 0.043, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 72/205 (35%), Gaps = 23/205 (11%) Query 498 LDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKR--NVIPTIT----QMNLKYAISAK 551 L+ SAGFP+ G + + +D L + +P IT ++ K ISA Sbjct 1809 LNTSAGFPYVTMGIKKRDLINNKTKDISRLKEALDKYGVDLPMITFLKDELRKKEKISA- 1867 Query 552 NRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVEN 611 + R + SI T+ R L G V+ S + ++ Sbjct 1868 GKTRVIEASSINDTILFRTTFGNLFSKFHLNPG---VVTGSAVGCDPETFWSKIPVMLDG 1924 Query 612 PHLMGWDYPKCDRAM-PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCG 670 +M +DY D ++ P + + ++ +N ++ + Sbjct 1925 DCIMAFDYTNYDGSIHPVWFQALKKVL------------ENLSFQSNLIDRLCYSKHLFK 1972 Query 671 GSLYVKPGGTSSGDATTAYANSVFN 695 + Y GG SG + T+ N++ N Sbjct 1973 STYYEVAGGVPSGCSGTSIFNTMIN 1997 >sp|P29813|POLG_EC11G Genome polyprotein OS=Echovirus 11 (strain Gregory) OX=31705 PE=1 SV=4 Length=2195 Score = 41.6 bits (96), Expect = 0.050, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 72/200 (36%), Gaps = 17/200 (9%) Query 501 SAGFPFNKWGKARLYYDSMSYEDQDAL--FAYTKRNVIPTITQMNLKYAIS---AKNRAR 555 SAG+P+ G + S D L +P +T + + + AK ++R Sbjct 1848 SAGYPYVALGIKKRDILSRRTRDLTKLKECMDKYGLNLPMVTYVKDELRSADKVAKGKSR 1907 Query 556 TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM 615 + S+ ++ RQ L ++ G I T G ++ + + + HL+ Sbjct 1908 LIEASSLNDSVAMRQTFGNLYRTFHLNPG----IVTGSAVGCDPDLFWSKIPVMLDGHLI 1963 Query 616 GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV 675 +DY D ++ + A L L + + + + Y Sbjct 1964 AFDYSGYDASLSPV--WFACLKLLLEKLGYTHKETNYIDYLCNSHHLYRD------KHYF 2015 Query 676 KPGGTSSGDATTAYANSVFN 695 + GG SG + T+ NS+ N Sbjct 2016 ERGGMPSGYSGTSMFNSMIN 2035 >sp|Q82122|POLG_HRV16 Genome polyprotein OS=Human rhinovirus 16 OX=31708 PE=1 SV=4 Length=2153 Score = 41.6 bits (96), Expect = 0.051, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 69/203 (34%), Gaps = 19/203 (9%) Query 498 LDKSAGFPFNKWGKARLYYDSMSYEDQDAL-FAYTKRNV-IPTITQM---NLKYAISAKN 552 L+ SAG+P+ G + + +D L A K +V +P IT + K A Sbjct 1805 LNTSAGYPYVTLGIKKKDLINNKTKDISKLKLALDKYDVDLPMITFLKDELRKKDKIAAG 1864 Query 553 RARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENP 612 + R + SI T+ R + L G V+ + ++ Sbjct 1865 KTRVIEASSINDTILFRTVYGNLFSKFHLNPG---VVTGCAVGCDPETFWSKIPLMLDGD 1921 Query 613 HLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGS 672 +M +DY D ++ + + L RL N + + Sbjct 1922 CIMAFDYTNYDGSIHPI--WFKA--LGMVLDNLSFNPTLINRLCNSKH-------IFKST 1970 Query 673 LYVKPGGTSSGDATTAYANSVFN 695 Y GG SG + T+ NS+ N Sbjct 1971 YYEVEGGVPSGCSGTSIFNSMIN 1993 >sp|P16604|POLG_SVDVH Genome polyprotein OS=Swine vesicular disease virus (strain H/3 '76) OX=12076 PE=3 SV=3 Length=2185 Score = 41.6 bits (96), Expect = 0.051, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 71/200 (36%), Gaps = 17/200 (9%) Query 501 SAGFPFNKWGKARLYYDSMSYEDQDAL--FAYTKRNVIPTITQMNLKYAIS---AKNRAR 555 SAG+P+ G + S D L +P +T + + + AK ++R Sbjct 1838 SAGYPYVALGIKKRDILSKKTRDLTKLKECMDKYGLNLPMVTYVKDELRSADKVAKGKSR 1897 Query 556 TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM 615 + S+ ++ RQ L K+ G I T G ++ + + + HL+ Sbjct 1898 LIEASSLNDSVAMRQTFGNLYKTFHLNPG----IVTGSAVGCDPDVFWSKIPVMLDGHLI 1953 Query 616 GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV 675 +DY D ++ + L L + + + + + Y Sbjct 1954 AFDYSGYDASLSPV--WFTCLKLLLEKLGYTNKETNYIDYLCNSHHLYRD------KHYF 2005 Query 676 KPGGTSSGDATTAYANSVFN 695 GG SG + T+ NS+ N Sbjct 2006 VRGGMPSGCSGTSIFNSMIN 2025 >sp|Q66575|POLG_EC12T Genome polyprotein OS=Echovirus 12 (strain Travis) OX=103909 PE=1 SV=4 Length=2193 Score = 41.6 bits (96), Expect = 0.051, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 70/200 (35%), Gaps = 17/200 (9%) Query 501 SAGFPFNKWG--KARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAIS---AKNRAR 555 SAG+P+ G K + + +P +T + + S AK ++R Sbjct 1846 SAGYPYVAIGIKKRDILSKKTKDLTKLKECMDKYGLNLPMVTYVKDELRSSEKVAKGKSR 1905 Query 556 TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM 615 + S+ ++ RQ L K+ G I T G ++ + + + HL+ Sbjct 1906 LIEASSLNDSVAMRQTFGNLYKTFHLNPG----IVTGSAVGCDPDLFWSKIPVMLDGHLI 1961 Query 616 GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV 675 +DY D ++ + A L L + + + + Y Sbjct 1962 AFDYSGYDASLSPV--WFACLKLLLEKLGYTHRETNYIDYLCNSHHLYRD------KHYF 2013 Query 676 KPGGTSSGDATTAYANSVFN 695 GG SG + T+ NS+ N Sbjct 2014 VRGGMPSGCSGTSIFNSMIN 2033 >sp|P13900|POLG_SVDVU Genome polyprotein OS=Swine vesicular disease virus (strain UKG/27/72) OX=12077 PE=1 SV=3 Length=2185 Score = 41.2 bits (95), Expect = 0.053, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 71/200 (36%), Gaps = 17/200 (9%) Query 501 SAGFPFNKWGKARLYYDSMSYEDQDAL--FAYTKRNVIPTITQMNLKYAIS---AKNRAR 555 SAG+P+ G + S D L +P +T + + + AK ++R Sbjct 1838 SAGYPYVALGIKKRDILSKKTRDLTKLKECMDKYGLNLPMVTYVKDELRSADKVAKGKSR 1897 Query 556 TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM 615 + S+ ++ RQ L K+ G I T G ++ + + + HL+ Sbjct 1898 LIEASSLNDSVAMRQTFGNLYKTFHLNPG----IVTGSAVGCDPDVFWSKIPVMLDGHLI 1953 Query 616 GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV 675 +DY D ++ + L L + + + + + Y Sbjct 1954 AFDYSGYDASLSPV--WFTCLKLLLEKLGYTNKETNYIDYLCNSHHLYRD------KHYF 2005 Query 676 KPGGTSSGDATTAYANSVFN 695 GG SG + T+ NS+ N Sbjct 2006 VRGGMPSGCSGTSIFNSMIN 2025 >sp|Q85197|POLG_PVMA Genome polyprotein OS=Potato virus A OX=12215 PE=1 SV=1 Length=3059 Score = 41.2 bits (95), Expect = 0.059, Method: Composition-based stats. Identities = 48/280 (17%), Positives = 92/280 (33%), Gaps = 40/280 (14%) Query 440 FFFAQDGNAAISDYDYYRYNLPTMC-------DIRQLLFVVEVVDKYFDCYDGGCINANQ 492 F+ N D +Y+ L ++ + ++ + + Sbjct 2332 FYKPSKLNREAYTQDLMKYSKVIQVGEVDCGVFESALTGLLHNLGRWGFTTACYTTDEDS 2391 Query 493 VIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALF-------AYTKRNVIPTITQMNLK 545 + L+ A GK R Y+D+MS +++ L + + V + L+ Sbjct 2392 IYT-ALNMKAAVGALYRGKKRDYFDAMSPSEREHLLFLSCKRLYFGQLGVWNGSLKAELR 2450 Query 546 -YAISAKNRART--------VAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYG 596 N+ RT + G +C N F+ LK A +G +KFYG Sbjct 2451 PKEKVDLNKTRTFTAAPIETLLGGKVCVDDFNNMFYSLHLK-------APWSVGMTKFYG 2503 Query 597 GWHNMLKTVYSDVENPHLMGWDYPKCDRAM-PNMLRIMASLVLARKHTTCCSLSHRFYRL 655 W+ ++ ++ D + D ++ P M+ VL + L Sbjct 2504 TWNQLM---CKLPDDWVYCDADGSQFDSSISPYMINA----VLRIRLHFMEDWDIGSQML 2556 Query 656 ANECAQV-LSEMVMCGGSLYVKPGGTSSGDATTAYANSVF 694 N ++ + L K G +SG +T N++ Sbjct 2557 QNLYTEIGTHQSQHQMAQLLKKFKGNNSGQPSTVVDNTLL 2596 >sp|P23008|POLG_HRV1A Genome polyprotein OS=Human rhinovirus 1A OX=12134 PE=1 SV=3 Length=2157 Score = 41.2 bits (95), Expect = 0.059, Method: Composition-based stats. Identities = 36/204 (18%), Positives = 69/204 (34%), Gaps = 21/204 (10%) Query 498 LDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKR--NVIPTITQM---NLKYAISAKN 552 L+ SAGFP+ G + + +D L + +P IT + K + Sbjct 1809 LNTSAGFPYVTMGIKKRDLINNKTKDISRLKEALDKYGVDLPMITFLKDELRKKEKISTG 1868 Query 553 RARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENP 612 + R + SI T+ R L G V+ S + ++ Sbjct 1869 KTRVIEASSINDTILFRTTFGNLFSKFHLNPG---VVTGSAVGCDPETFWSKIPVMLDGD 1925 Query 613 HLMGWDYPKCDRAM-PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGG 671 +M +DY D ++ P + + ++ +N ++ + Sbjct 1926 CIMAFDYTNYDGSIHPVWFQALKKVL------------ENLSFQSNLIDRLCYSKHLFKS 1973 Query 672 SLYVKPGGTSSGDATTAYANSVFN 695 + Y GG SG + T+ N++ N Sbjct 1974 TYYEVAGGVPSGCSGTSIFNTMIN 1997 >sp|Q66282|POLG_CXB3W Genome polyprotein OS=Coxsackievirus B3 (strain Woodruff) OX=103904 PE=1 SV=3 Length=2185 Score = 41.2 bits (95), Expect = 0.059, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 74/200 (37%), Gaps = 17/200 (9%) Query 501 SAGFPFNKWGKARLYYDSMSYEDQDAL--FAYTKRNVIPTITQMNLKYAIS---AKNRAR 555 SAG+P+ G + S D L +P +T + + + AK ++R Sbjct 1838 SAGYPYVALGIKKRDILSKKTRDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKGKSR 1897 Query 556 TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM 615 + S+ ++ RQ L K+ G VV G++ G ++ + + + HL+ Sbjct 1898 LIEASSLNDSVAMRQTFGNLYKTFHLNPG--VVTGSA--VGCDPDLFWSKIPVMLDGHLI 1953 Query 616 GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV 675 +DY D ++ + A L L + + + + Y Sbjct 1954 AFDYSGYDASLSPV--WFACLKLLLEKLGYSHKETNYIDYLCNSHHLYRD------KHYF 2005 Query 676 KPGGTSSGDATTAYANSVFN 695 GG SG + T+ NS+ N Sbjct 2006 VRGGMPSGCSGTSIFNSMIN 2025 >sp|P27411|POLG_RHDV3 Genome polyprotein OS=Rabbit hemorrhagic disease virus (strain V-351) OX=11977 GN=ORF1 PE=1 SV=2 Length=2344 Score = 40.8 bits (94), Expect = 0.071, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 48/149 (32%), Gaps = 9/149 (6%) Query 571 FHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNML 630 FH + R + +G ++ + S + + DY K D M + Sbjct 1456 FHNICYELKMVARFGPIAVGVDMTSRDVDVIINNLTSKASDFLCL--DYSKWDSTMSPCV 1513 Query 631 RIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYA 690 +A +LA CC + + M + + G SG T+ Sbjct 1514 VRLAIDILAD----CCEQTELTKSVVLTLKS--HPMTILDAMIVQTKRGLPSGMPFTSVI 1567 Query 691 NSVFNICQAVTANVNALLSTDGNKIADKY 719 NS+ + +A V + G ++ Y Sbjct 1568 NSICHWLLW-SAAVYKSCAEIGLHCSNLY 1595 >sp|Q9YLJ1|POLG_EC05N Genome polyprotein OS=Echovirus 5 (strain Noyce) OX=176283 PE=3 SV=3 Length=2196 Score = 40.8 bits (94), Expect = 0.079, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 72/200 (36%), Gaps = 17/200 (9%) Query 501 SAGFPFNKWGKARLYYDSMSYEDQDAL--FAYTKRNVIPTITQMNLKYAIS---AKNRAR 555 SAG+P+ G + S +D L +P +T + + + AK ++R Sbjct 1849 SAGYPYVALGIKKRDILSKRTKDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKGKSR 1908 Query 556 TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM 615 + S+ ++ RQ L K+ G I T G ++ + + + HL+ Sbjct 1909 LIEASSLNDSVAMRQTFGNLYKTFHLNPG----IVTGSAVGCDPDLFWSKIPVMLDGHLI 1964 Query 616 GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV 675 +DY D ++ + A L + + + + + Y Sbjct 1965 AFDYSGYDASLSPV--WFACLKMLLEKLGYTHKETNYIDYLCNSHHLYRD------KHYF 2016 Query 676 KPGGTSSGDATTAYANSVFN 695 GG SG + T+ NS+ N Sbjct 2017 VRGGMPSGCSGTSIFNSMIN 2036 >sp|Q66577|POLG_EC09B Genome polyprotein OS=Echovirus 9 (strain Barty) OX=103914 PE=3 SV=3 Length=2203 Score = 40.8 bits (94), Expect = 0.079, Method: Composition-based stats. Identities = 39/200 (20%), Positives = 72/200 (36%), Gaps = 17/200 (9%) Query 501 SAGFPFNKWGKARLYYDSMSYEDQDAL--FAYTKRNVIPTITQMNLKYAISAKN---RAR 555 SAG+P+ G + S +D L +P +T + + + K+ ++R Sbjct 1856 SAGYPYVALGIKKRDILSKRTKDLTKLKECMDKYGLNLPMVTYVKDELRSAEKSPRGKSR 1915 Query 556 TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM 615 + S+ ++ RQ L K G I T G ++ + + + HL+ Sbjct 1916 LIEASSLNDSVAMRQTFGNLYKVFHLNPG----IVTGSAVGCDPDVFWSKIPVMLDGHLI 1971 Query 616 GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV 675 +DY D ++ + A L L + S + + + Y Sbjct 1972 AFDYSGYDASLSPV--WFACLKLLLEKLGYSSKETNYIDYLCNSHHLYRD------KHYF 2023 Query 676 KPGGTSSGDATTAYANSVFN 695 GG SG + T+ NS+ N Sbjct 2024 VRGGMPSGCSGTSIFNSMIN 2043 >sp|Q9YLG5|POLG_CXB2O Genome polyprotein OS=Coxsackievirus B2 (strain Ohio-1) OX=231473 PE=1 SV=3 Length=2187 Score = 40.4 bits (93), Expect = 0.098, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 70/200 (35%), Gaps = 17/200 (9%) Query 501 SAGFPFNKWG--KARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAIS---AKNRAR 555 SAG+P+ G K + + +P +T + + + AK ++R Sbjct 1840 SAGYPYVALGIKKRDILSKKTKDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKGKSR 1899 Query 556 TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM 615 + S+ ++ RQ L K+ G I T G +M + + + HL+ Sbjct 1900 LIEASSLNDSVAMRQTFGNLYKAFHLNPG----IVTGSAVGCDPDMFWSKIPVMLDGHLI 1955 Query 616 GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV 675 +DY D ++ + A L L + + + + Y Sbjct 1956 AFDYSGYDASLSPV--WFACLKLLLEKLGYTHKETNYIDYLCNSHHLYRD------KHYF 2007 Query 676 KPGGTSSGDATTAYANSVFN 695 GG SG + T+ NS+ N Sbjct 2008 VRGGMPSGCSGTSIFNSMIN 2027 >sp|Q672I1|POLG_SVSAP Genome polyprotein OS=Sapporo virus (isolate GI/Human/Germany/pJG-Sap01) OX=291175 PE=3 SV=1 Length=2280 Score = 40.0 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 51/284 (18%), Positives = 91/284 (32%), Gaps = 37/284 (13%) Query 455 YYRYNLPTMCDIRQLLF-VVEVVDKYFDC----YDGGCINANQVIVNNLDKSAGFPFNKW 509 Y PT QLL V V Y + + + +Q ++ PF + Sbjct 1271 LKPYTEPTAGVPPQLLSRAVTHVRSYIETIIGTHRSPVLTYHQACELLERTTSCGPFVQ- 1329 Query 510 GKARLYYDSMSYEDQDAL-------FAYTKRNVIP-TITQMNLK--YAISAKNRA---RT 556 G Y+D + L + + + P ++ LK KN+A R Sbjct 1330 GLKGDYWDEEQQQYTGVLANHLEQAWDKANKGIAPRNAYKLALKDELRPIEKNKAGKRRL 1389 Query 557 VAGVSICSTMTNRQFHQKLLKSI-AATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM 615 + G +T+ + + + T V +G + M ++ V L Sbjct 1390 LWGCDAATTLIATAAFKAVATRLQVVTPMTPVAVGINMDSVQMQVMNDSLKGGV----LY 1445 Query 616 GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMV--MCGGSL 673 DY K D + + +L R + + + + LS Sbjct 1446 CLDYSKWDSTQNPAVTAASLAILERFAE--------PHPIVSCAIEALSSPAEGYVNDIK 1497 Query 674 YVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIAD 717 +V GG SG T+ NS+ N V A + L + + + + Sbjct 1498 FVTRGGLPSGMPFTSVVNSI-NHMIYVAAAI--LQAYESHNVPY 1538 >sp|Q69014|POLG_SVM93 Genome polyprotein OS=Sapporo virus (strain Human/United Kingdom/Manchester/1993) OX=82659 GN=ORF1 PE=1 SV=2 Length=2280 Score = 40.0 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 51/284 (18%), Positives = 91/284 (32%), Gaps = 37/284 (13%) Query 455 YYRYNLPTMCDIRQLLF-VVEVVDKYFDC----YDGGCINANQVIVNNLDKSAGFPFNKW 509 Y PT QLL V V Y + + + +Q ++ PF + Sbjct 1271 LKPYTEPTAGVPPQLLSRAVTHVRSYIETIIGTHRSPVLTYHQACELLERTTSCGPFVQ- 1329 Query 510 GKARLYYDSMSYEDQDAL-------FAYTKRNVIP-TITQMNLK--YAISAKNRA---RT 556 G Y+D + L + + + P ++ LK KN+A R Sbjct 1330 GLKGDYWDEEQQQYTGVLANHLEQAWDKANKGIAPRNAYKLALKDELRPIEKNKAGKRRL 1389 Query 557 VAGVSICSTMTNRQFHQKLLKSI-AATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM 615 + G +T+ + + + T V +G + M ++ V L Sbjct 1390 LWGCDAATTLIATAAFKAVATRLQVVTPMTPVAVGINMDSVQMQVMNDSLKGGV----LY 1445 Query 616 GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMV--MCGGSL 673 DY K D + + +L R + + + + LS Sbjct 1446 CLDYSKWDSTQNPAVTAASLAILERFAE--------PHPIVSCAIEALSSPAEGYVNDIK 1497 Query 674 YVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIAD 717 +V GG SG T+ NS+ N V A + L + + + + Sbjct 1498 FVTRGGLPSGMPFTSVVNSI-NHMIYVAAAI--LQAYESHNVPY 1538 >sp|Q03053|POLG_CXB5P Genome polyprotein OS=Coxsackievirus B5 (strain Peterborough / 1954/UK/85) OX=103907 PE=1 SV=3 Length=2185 Score = 40.0 bits (92), Expect = 0.13, Method: Composition-based stats. Identities = 37/200 (19%), Positives = 70/200 (35%), Gaps = 17/200 (9%) Query 501 SAGFPFNKWG--KARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAIS---AKNRAR 555 SAG+P+ G K + + +P +T + + + AK ++R Sbjct 1838 SAGYPYVALGIKKRDILSKKTKDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKGKSR 1897 Query 556 TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM 615 + S+ ++ RQ L K+ G I T G ++ + + + HL+ Sbjct 1898 LIEASSLNDSVAMRQTFGNLYKTFHLNPG----IVTGSAVGCDPDLFWSKIPVLLDGHLI 1953 Query 616 GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV 675 +DY D ++ + A L L + + + + Y Sbjct 1954 AFDYSGYDASLSPV--WFACLKLLLEKLGYTHKETNYIDYLCNSHHLYRD------KHYF 2005 Query 676 KPGGTSSGDATTAYANSVFN 695 GG SG + T+ NS+ N Sbjct 2006 VRGGMPSGCSGTSIFNSMIN 2025 >sp|B9VUU3|POLG_HE71 Genome polyprotein OS=Human enterovirus 71 OX=39054 PE=1 SV=1 Length=2193 Score = 39.7 bits (91), Expect = 0.16, Method: Composition-based stats. Identities = 39/238 (16%), Positives = 78/238 (33%), Gaps = 17/238 (7%) Query 484 DGGCINANQVIVNNLDKSAGFPFNKWG-KARLYYDSMSYEDQDALFAYTKRNV-IPTITQ 541 + C + + +L SAG+P++ G K R D + + F K + +P T Sbjct 1829 EEACYGTDNLEAIDLHTSAGYPYSALGIKKRDILDPTTRDVSKMKFYMDKYGLDLPYSTY 1888 Query 542 MNLKYA---ISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGW 598 + + K ++R + S+ ++ R L ++ A G + S Sbjct 1889 VKDELRSIDKIKKGKSRLIEASSLNDSVYLRMAFGHLYETFHANPGT---VTGSAVGCNP 1945 Query 599 HNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANE 658 + + L +DY D ++ + +L L + + N Sbjct 1946 DVFWSKLPILLPGS-LFAFDYSGYDASLSPV--WFRALELVLREIGYSEEAVSLIEGINH 2002 Query 659 CAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA 716 V C GG SG + T+ N++ N + D +++ Sbjct 2003 THHVYRNKTYCV------LGGMPSGCSGTSIFNTMINNIIIRALLIKTFKGIDLDELN 2054 >sp|A4KZ49|POLG_TRMVU Genome polyprotein OS=Triticum mosaic virus (isolate Triticum aestivum/United States/U06-123/2006) OX=1289472 PE=1 SV=3 Length=3112 Score = 39.7 bits (91), Expect = 0.17, Method: Composition-based stats. Identities = 27/145 (19%), Positives = 55/145 (38%), Gaps = 8/145 (6%) Query 551 KNRARTVAGVSICSTMTNRQFHQKLLKSIAAT-RGATVVIGTSKFYGGWHNMLKTVYSDV 609 + + R + + F AT G+ +G +KF GW + + D Sbjct 2510 EKKTRVFTAAPFDVSFGAKAFVDDFNNKFYATQAGSNWTVGINKFNCGWDELARRFNPDW 2569 Query 610 ENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMV-M 668 + + D + D ++ +L +++ R+H + R L+N Q++ + Sbjct 2570 K---FIDADGSRYDSSLTPLL--FNAVLRIRQHFLRANGFER-RMLSNFYTQLVWTPIST 2623 Query 669 CGGSLYVKPGGTSSGDATTAYANSV 693 G + K G SG +T N++ Sbjct 2624 ITGQIVKKNKGGPSGQPSTVVDNTM 2648 >sp|O91734|POLG_EC01F Genome polyprotein OS=Echovirus 1 (strain Human/Egypt/Farouk/1951) OX=103908 PE=1 SV=4 Length=2184 Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 37/200 (19%), Positives = 71/200 (36%), Gaps = 17/200 (9%) Query 501 SAGFPFNKWG--KARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAIS---AKNRAR 555 SAG+P+ G K + + +P +T + + + AK ++R Sbjct 1837 SAGYPYVALGIKKRDILSKKTKDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKGKSR 1896 Query 556 TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM 615 + S+ ++ RQ L K+ G I T G ++ + + + HL+ Sbjct 1897 LIEASSLNDSVAMRQTFGNLYKTFHLNPG----IVTGSAVGCDPDVFWSKIPVMLDGHLI 1952 Query 616 GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV 675 +DY D ++ + A L L + + + + + Y Sbjct 1953 AFDYSGYDASLSPV--WFACLKLLLEKLGYTNKETNYIDYLCNSHHLYRD------KHYF 2004 Query 676 KPGGTSSGDATTAYANSVFN 695 GG SG + T+ NS+ N Sbjct 2005 VRGGMPSGCSGTSIFNSMIN 2024 >sp|P90245|POL1_BAMMN Genome polyprotein 1 OS=Barley mild mosaic virus (strain Na1) OX=103900 PE=3 SV=1 Length=2258 Score = 39.3 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 67/181 (37%), Gaps = 20/181 (11%) Query 545 KYAISAKNRARTVAGVSICSTMT------NRQFHQKLLKSIAATRGATVVIGTSKFYGGW 598 + + K R T A ++ M N+QF++ LK A +G +KF GW Sbjct 1681 QKILERKTRVFTAAPITSLIAMKYYVDDFNKQFYKTHLK-------APHTVGINKFNRGW 1733 Query 599 HNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANE 658 N+ + + D + D ++ L + RKH + + E Sbjct 1734 QNLYEKLNK--PGWTHGSGDGSRFDSSIDGFL--FDVIKDIRKHFMDAEHHKQLDTIYEE 1789 Query 659 CAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADK 718 V +++ + G + K G +SG +T N++ + + L D ++ D+ Sbjct 1790 I--VNTKICLANGLVIQKNCGNNSGQPSTVVDNTL-ALMTSFLYAYARLTGDDTFELMDE 1846 Query 719 Y 719 Sbjct 1847 N 1847 >sp|P12915|POLG_BOVEV Genome polyprotein OS=Bovine enterovirus (strain VG-5-27) OX=12065 PE=1 SV=3 Length=2175 Score = 39.3 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 42/237 (18%), Positives = 81/237 (34%), Gaps = 37/237 (16%) Query 501 SAGFPFNKWGKARLYYDSMSYEDQDAL----FAYTKRNVIPTITQMNLK-YAISA--KNR 553 SA +P+ G + D ++ E +D +P +T + + A K + Sbjct 1829 SASYPYVAMGIKKR--DILNKETRDVTKMQECIDKYGLNLPMVTYVKDELRAPDKIRKGK 1886 Query 554 ARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPH 613 +R + S+ ++ R + L + T T+ + G + + + Sbjct 1887 SRLIEASSLNDSVAMRCYF-GNLYKVFHTNPGTI---SGCAVGCDPETFWSKIPVMMDGE 1942 Query 614 LMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSL 673 L G+DY D ++ M + VL R C + + C L Sbjct 1943 LFGFDYTAYDASLSPMWFHALAEVLRRIGFVECKH--------------FIDQLCCSHHL 1988 Query 674 YVKP-----GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQH 725 Y+ GG SG + T+ NS+ N + L+ T I ++ + + Sbjct 1989 YMDKHYYVVGGMPSGCSGTSIFNSMINNLI-----IRTLVLTVYKNIDLDDLKIIAY 2040 >sp|Q05057|POLG_PYFV1 Genome polyprotein OS=Parsnip yellow fleck virus (isolate P-121) OX=33762 PE=1 SV=1 Length=3027 Score = 38.9 bits (89), Expect = 0.29, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 64/188 (34%), Gaps = 12/188 (6%) Query 551 KNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVE 610 K R ++ V R F + +A +++G + W ++ ++ Sbjct 2458 KTRLFSILPVEFNMH-ARRLFLDFNVFVMANRHKHGIMVGINPHSREWSDLAISL--ASF 2514 Query 611 NPHLMGWDYPKCDRAM-PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC 669 +P+ D+ D P+ +++ L + R+ ++ Sbjct 2515 SPYGFNGDFANFDGMFHPSSFSMVSELANIFYGNFLSTERDNLTRMLTNRFSLM------ 2568 Query 670 GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYE 729 G++ PGG SG T NS N+ + + L +G + N + Sbjct 2569 KGAILRVPGGGPSGFPMTVIFNSFINLF-YLQSAWIMLARFNGRQDISHP-CNFPKYVRA 2626 Query 730 CLYRNRDV 737 C+Y + ++ Sbjct 2627 CVYGDDNI 2634 >sp|Q86887|POLG_CXB4E Genome polyprotein OS=Coxsackievirus B4 (strain E2) OX=103905 PE=3 SV=3 Length=2183 Score = 38.9 bits (89), Expect = 0.31, Method: Composition-based stats. Identities = 39/216 (18%), Positives = 71/216 (33%), Gaps = 17/216 (8%) Query 501 SAGFPFNKWG--KARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAIS---AKNRAR 555 SAG+P+ G K + + +P +T + + + AK ++R Sbjct 1836 SAGYPYVTLGIKKRDILSKKTKDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKGKSR 1895 Query 556 TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM 615 + S+ ++ RQ L K+ G I T G ++ + + + HL Sbjct 1896 LIEASSLNDSVAMRQTFGNLYKTFHLNPG----IVTGSAVGCDPDLFWSKIPVMLDGHLR 1951 Query 616 GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV 675 +DY D ++ + A L L + + + + Y Sbjct 1952 AFDYSGYDASLSPV--WFACLKLLLEKLGYSHKETNYIDYLCNSHHLYRD------KHYF 2003 Query 676 KPGGTSSGDATTAYANSVFNICQAVTANVNALLSTD 711 GG SG + T+ NS+ N T D Sbjct 2004 VRGGMPSGCSGTSIFNSMINNIIIRTLMFKVYKGID 2039 >sp|Q9QF31|POLG_CX16T Genome polyprotein OS=Coxsackievirus A16 (strain Tainan/5079/98) OX=231417 PE=1 SV=3 Length=2193 Score = 38.9 bits (89), Expect = 0.32, Method: Composition-based stats. Identities = 40/238 (17%), Positives = 79/238 (33%), Gaps = 17/238 (7%) Query 484 DGGCINANQVIVNNLDKSAGFPFNKWG-KARLYYDSMSYEDQDALFAYTKRNV-IPTITQ 541 + C + +L SAG+P++ G K R D ++ + F K + +P T Sbjct 1829 EEACYGTEYLEAIDLHTSAGYPYSALGVKKRDILDPITRDTTKMKFYMDKYGLDLPYSTY 1888 Query 542 MNLKYA---ISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGW 598 + + K ++R + S+ ++ R L ++ A G + S Sbjct 1889 VKDELRSLDKIKKGKSRLIEASSLNDSVYLRMTFGHLYETFHANPGT---VTGSAVGCNP 1945 Query 599 HNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANE 658 + + L +DY D ++ + +L + + + N Sbjct 1946 DVFWSKLPILLPGS-LFAFDYSGYDASLSPV--WFRALEVVLREIGYSEEAVSLIEGINH 2002 Query 659 CAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA 716 V C GG SG + T+ NS+ N T + D +++ Sbjct 2003 THHVYRNKTYCV------LGGMPSGCSGTSIFNSMINNIIIRTLLIKTFKGIDLDELN 2054 >sp|P89657|RDRP_PMMVJ Replicase large subunit OS=Pepper mild mottle virus (strain Japan) OX=138663 PE=1 SV=1 Length=1612 Score = 38.5 bits (88), Expect = 0.36, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 57/165 (35%), Gaps = 3/165 (2%) Query 447 NAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPF 506 + D Y+ ++ T + Q+ V + V+ + G ++ Q + Sbjct 1101 CVSSYLLDMYKVDVSTQYQL-QIESVYKGVNLFVAAPKTGDVSDMQYYYDKCLPGNSTIL 1159 Query 507 NKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAI-SAKNRARTVAGVSICST 565 N++ + S +D + +K +P ++ LK I +A + R + Sbjct 1160 NEYDAVTMQIRENSLNVKDCVLDMSKSVPLPRESETTLKPVIRTAAEKPRKPGLLENLVA 1219 Query 566 MTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVE 610 M R F+ L + ++ KF+ + K ++ Sbjct 1220 MIKRNFNSPELVGVVDIEDTASLV-VDKFFDAYLIKEKKKPKNIP 1263 >sp|Q12018|CDC53_YEAST Cell division control protein 53 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=CDC53 PE=1 SV=1 Length=815 Score = 38.5 bits (88), Expect = 0.36, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 71/189 (38%), Gaps = 17/189 (9%) Query 728 YECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLY 787 + R +E Y L+ + IL+ NS Q V K F Sbjct 69 FSTDSRTGQSTILVGSEIYEKLKNYLKNYILN---FKQSNSETFLQFYVKRWKRFTIGAI 125 Query 788 YQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDI 847 + N+ F + W + + + G +T+ + + ++ DPS+ + +D + Sbjct 126 FLNHAFDYMNRYWVQKERSDGKRHIFDVNTLCLMTWKEVMF----DPSKDVLINELLDQV 181 Query 848 V---------KTDGTLMIERFVSLAIDAYPLTKHPNQEYADVF-HLYLQYIRKLHDELTG 897 +++ + I+ V+L ID L K Y VF +L+ ++ + + T Sbjct 182 TLGREGQIIQRSNISTAIKSLVALGIDPQDLKKLNLNVYIQVFEKPFLKKTQEYYTQYTN 241 Query 898 HMLDMYSVM 906 L+ +SV Sbjct 242 DYLEKHSVT 250 >sp|P89509|POLG_TUMVJ Genome polyprotein OS=Turnip mosaic virus (strain Japanese) OX=12230 PE=1 SV=2 Length=3164 Score = 38.5 bits (88), Expect = 0.38, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 80/223 (36%), Gaps = 34/223 (15%) Query 494 IVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYT-------KRNVIPTITQMNLK- 545 I L+ + GK + Y+ + E ++ + + K V + L+ Sbjct 2477 IFEALNMKSAVGALYKGKKKDYFAEFTPEMKEEILKQSCERLFLGKMGVWNGSLKAELRP 2536 Query 546 --YAISAKNRA------RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGG 597 + K R T+ G +C N QF+ L+ A +G +KFY G Sbjct 2537 LEKVEANKTRTFTAAPLDTLLGGKVCVDDFNNQFYDHNLR-------APWSVGMTKFYCG 2589 Query 598 WHNMLKTVYSDVENPHLMGWDYPKCDRAM--PNMLRIMASLVLARKHTTCCSLSHRFYRL 655 W +L+++ GW Y D + ++ + + VL + L Sbjct 2590 WDRLLESLPD--------GWVYCDADGSQFDSSLSPYLINAVLNIRLGFMEEWDIGEVML 2641 Query 656 ANECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNIC 697 N +++ + G+L K G +SG +T N++ I Sbjct 2642 RNLYTEIVYTPISTPDGTLVKKFKGNNSGQPSTVVDNTLMVIL 2684 >sp|P08292|POLG_CXB4J Genome polyprotein OS=Coxsackievirus B4 (strain JVB / Benschoten / New York/51) OX=103906 PE=1 SV=4 Length=2183 Score = 38.5 bits (88), Expect = 0.38, Method: Composition-based stats. Identities = 37/200 (19%), Positives = 70/200 (35%), Gaps = 17/200 (9%) Query 501 SAGFPFNKWG--KARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAIS---AKNRAR 555 SAG+P+ G K + + +P +T + + + AK ++R Sbjct 1836 SAGYPYVALGIKKRDILSKKTKDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKGKSR 1895 Query 556 TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM 615 + S+ ++ RQ L K+ G I T G ++ + + + HL+ Sbjct 1896 LIEASSLNDSVAMRQTFGNLYKAFHLNPG----IVTGSAVGCDPDVFWSKIPVMLDGHLI 1951 Query 616 GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV 675 +DY D ++ + A L L + + + + Y Sbjct 1952 AFDYSGYDASLSPV--WFACLKLLLEKLGYTHKETNYIDYLCNSHHLYRD------KHYF 2003 Query 676 KPGGTSSGDATTAYANSVFN 695 GG SG + T+ NS+ N Sbjct 2004 VRGGMPSGCSGTSIFNSMIN 2023 >sp|Q8JN60|POLG_BECNB Genome polyprotein OS=Bovine enteric calicivirus NB (isolate Bovine/United States/N ebraska/1980) OX=2847999 GN=ORF1 PE=3 SV=1 Length=2210 Score = 38.5 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 27/154 (18%), Positives = 46/154 (30%), Gaps = 17/154 (11%) Query 550 AKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGA-TVVIGTSKFYGG----WHNMLKT 604 A+ + R + G + + ++ V +G W N L Sbjct 1318 AEGKRRLIWGADARVALIASAALSPIANALKTVTNLLPVQVGVDPSSASCVSAWVNRLNR 1377 Query 605 VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS 664 H + DY K D M +L +A +L C + + R+A Sbjct 1378 H------DHCLELDYSKWDSTMSPVLINIAIDIL------CNTCASDGLRVAVCQTLKTR 1425 Query 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQ 698 + G G SG T+ NS+ + Sbjct 1426 PTALVEGVAVPTKSGLPSGMPFTSQINSIVHWIL 1459 >sp|P14879|PYR4_MICDP Phycobilisome 31.6 kDa linker polypeptide, phycocyanin-associated, rod OS=Microchaete diplosiphon OX=1197 GN=cpcI3 PE=3 SV=1 Length=285 Score = 37.3 bits (85), Expect = 0.53, Method: Composition-based stats. Identities = 20/85 (24%), Positives = 37/85 (44%), Gaps = 4/85 (5%) Query 708 LSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFN 767 L T+GN ++VR L LY+++ +F + KH D++ + ++ Sbjct 61 LLTNGNITVQEFVRQLAK---SNLYKSKFFSNNFHSRVTELNFKHLLGRAPYDESEIIYH 117 Query 768 ST-YASQGLVASIKNFKSVLYYQNN 791 Y ++G A I ++ YQ N Sbjct 118 LDLYQTKGYEADIDSYIDSAEYQTN 142 >sp|Q8B3M2|POLG_DWV Genome polyprotein OS=Deformed wing virus OX=198112 PE=1 SV=2 Length=2893 Score = 38.1 bits (87), Expect = 0.53, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 72/218 (33%), Gaps = 24/218 (11%) Query 545 KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATR-GATVVIGTSKFYGGWHNMLK 603 K I K R +++ V T+ RQ++ + S A R A IG W N+ Sbjct 2569 KCRIPGKTRIFSISPVQF--TIPFRQYYLDFMASYRAARLNAEHGIGIDVNSLEWTNLAT 2626 Query 604 TVYSDVENPHLMGWDY----PKCDRAMPNM-LRIMASLVLARKHTTCCSLSHRFYRLANE 658 + H++ DY P D + I+ VL R + Sbjct 2627 RLSKX--GTHIVTGDYKNFGPGLDSDVAASAFEIIIDWVLHYTEEDNKDEMKRVMWTMAQ 2684 Query 659 CAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADK 718 ++L+ + +Y P G SG T N++ N L+ I D Sbjct 2685 --EILAPSHLYRDLVYRVPCGIPSGSPITDILNTISN---------CLLIRLAWLGITDL 2733 Query 719 YVRNLQHRLYECLYRN---RDVDTDFVNEFYAYLRKHF 753 + + Y + +V + +++F A F Sbjct 2734 PLSEFSQNVVLVCYGDDLIMNVSDNMIDKFNAVTIGKF 2771 >sp|Q85036|RDRP_ROTPY RNA-directed RNA polymerase OS=Rotavirus A (strain RVA/Pig/Mexico/YM/1983/G11P9[7]) OX=10919 PE=2 SV=1 Length=1088 Score = 37.7 bits (86), Expect = 0.67, Method: Composition-based stats. Identities = 47/262 (18%), Positives = 88/262 (34%), Gaps = 26/262 (10%) Query 553 RARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENP 612 R R + + +K+L TR S + ++ + + S+ Sbjct 458 RTRIIFILPYEYNSAQHAVVEKMLSYAKHTREYAEFYSQSNQLLSYGDVTRFLSSNS--- 514 Query 613 HLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQ----VLSEMVM 668 ++ D + D + N +++ + + + N Q ++ V Sbjct 515 MVLYTDVSQWDSSQHNTQPFRKGIIMGLDMLANMTNDPKVVQTLNLYKQTQINLMDSYVQ 574 Query 669 CGGSLYVKP---GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA--DKYVRNL 723 +K G +SG+ T ANS+ N+ A + +LS NK + K +R Sbjct 575 IPDGNVIKKIQYGAVASGEKQTKAANSIANL-----ALIKTVLSRIANKYSFITKIIRVD 629 Query 724 QHRLYECLYRNRDVDTDFVNEF-----YAYLRKHFSMMILSDDAVVCFNSTYASQGLVAS 778 Y L N DV V E Y Y R + + L + Y + G + Sbjct 630 GDDNYAVLQFNTDVTKQMVQEVSNDVRYIYSRMNAKVKALVSTVGIEIAKRYIAGGKIF- 688 Query 779 IKNFKSVLYYQNNVFMSEAKCW 800 F++ + NN ++ W Sbjct 689 ---FRAGINLLNNEKRGQSTQW 707 >sp|Q6W8W5|POL1_ARMVN RNA1 polyprotein OS=Arabis mosaic virus (isolate NW) OX=282063 PE=3 SV=1 Length=2284 Score = 37.7 bits (86), Expect = 0.68, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 6/117 (5%) Query 579 IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVL 638 + +G + + W ++ + ++ DY D + + + + ++ Sbjct 1696 MKKRSHLPCQVGINPYSREWTDLYHRLAE--KSDVGYNCDYKGFDGLITEQILAVVATMI 1753 Query 639 ARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFN 695 S R L + + +CG +Y G SG A T NS+FN Sbjct 1754 NAGFRNPVSNQQRSNLLM----AISGRLSICGSQVYETEAGIPSGCALTVVINSIFN 1806 >sp|Q02597|POLG_TUMVQ Genome polyprotein OS=Turnip mosaic virus (strain Quebec) OX=36396 PE=1 SV=2 Length=3163 Score = 37.7 bits (86), Expect = 0.71, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 80/223 (36%), Gaps = 34/223 (15%) Query 494 IVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYT-------KRNVIPTITQMNLK- 545 I L+ + GK + Y+ + E ++ + + K V + L+ Sbjct 2476 IFEALNMKSAVGALYKGKKKDYFAEFTPEVKEEILKQSCERLFLGKMGVWNGSLKAELRP 2535 Query 546 --YAISAKNRA------RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGG 597 + K R T+ G +C N QF+ L+ A +G +KFY G Sbjct 2536 LEKVEANKTRTFTAAPLDTLLGGKVCVDDFNNQFYDHNLR-------APWDVGMTKFYCG 2588 Query 598 WHNMLKTVYSDVENPHLMGWDYPKCDRAM--PNMLRIMASLVLARKHTTCCSLSHRFYRL 655 W +L+++ GW Y D + ++ + + VL + L Sbjct 2589 WDRLLESLPD--------GWVYCDADGSQFDSSLSPYLINAVLNIRLGFMEEWDVGEVML 2640 Query 656 ANECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNIC 697 N +++ + G+L K G +SG +T N++ I Sbjct 2641 RNLYTEIVYTPISTPDGTLVKKFKGNNSGQPSTVVDNTLMVIL 2683 >sp|P04936|POLG_HRV2 Genome polyprotein OS=Human rhinovirus 2 OX=12130 PE=1 SV=3 Length=2150 Score = 37.3 bits (85), Expect = 0.84, Method: Composition-based stats. Identities = 38/203 (19%), Positives = 71/203 (35%), Gaps = 19/203 (9%) Query 498 LDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKR--NVIPTITQM---NLKYAISAKN 552 L+ SAGFP+ G + + +D L + +P +T + K+ K Sbjct 1802 LNTSAGFPYIAMGVKKRDLINNKTKDISKLKEAIDKYGVDLPMVTFLKDELRKHEKVIKG 1861 Query 553 RARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENP 612 + R + S+ T+ R L G +V G S + + +++ Sbjct 1862 KTRVIEASSVNDTLLFRTTFGNLFSKFHLNPG--IVTG-SAVGCDPEVFWSKIPAMLDDK 1918 Query 613 HLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGS 672 +M +DY D ++ + +L LS + C + + Sbjct 1919 CIMAFDYTNYDGSIHPI--WFEAL-----KQVLVDLSFNPTLIDRLCKS----KHIFKNT 1967 Query 673 LYVKPGGTSSGDATTAYANSVFN 695 Y GG SG + T+ N++ N Sbjct 1968 YYEVEGGVPSGCSGTSIFNTMIN 1990 >sp|P03313|POLG_CXB3N Genome polyprotein OS=Coxsackievirus B3 (strain Nancy) OX=103903 PE=1 SV=4 Length=2185 Score = 37.3 bits (85), Expect = 0.87, Method: Composition-based stats. Identities = 37/200 (19%), Positives = 71/200 (36%), Gaps = 17/200 (9%) Query 501 SAGFPFNKWG--KARLYYDSMSYEDQDALFAYTKRNVIPTITQM---NLKYAISAKNRAR 555 SAG+P+ G K + + +P +T + AK ++R Sbjct 1838 SAGYPYVALGIKKRDILSKKTKDLTKLKECMDKYGLNLPMVTYVKDELRSIEKVAKGKSR 1897 Query 556 TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM 615 + S+ ++ RQ L K+ G VV G++ G ++ + + + HL+ Sbjct 1898 LIEASSLNDSVAMRQTFGNLYKTFHLNPG--VVTGSA--VGCDPDLFWSKIPVMLDGHLI 1953 Query 616 GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV 675 +DY D ++ + A L + + + + + Y Sbjct 1954 AFDYSGYDASLSPV--WFACLKMLLEKLGYTHKETNYIDYLCNSHHLYRD------KHYF 2005 Query 676 KPGGTSSGDATTAYANSVFN 695 GG SG + T+ NS+ N Sbjct 2006 VRGGMPSGCSGTSIFNSMIN 2025 >sp|P29098|RDRP_PMMVS Replicase large subunit OS=Pepper mild mottle virus (strain Spain) OX=31745 PE=3 SV=2 Length=1612 Score = 37.3 bits (85), Expect = 0.95, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 57/165 (35%), Gaps = 3/165 (2%) Query 447 NAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPF 506 + D Y+ ++ T + Q+ V + V+ + G ++ Q + Sbjct 1101 CVSSYLLDMYKVDVSTQXQL-QIESVYKGVNLFVAAPKTGDVSDMQYYYDKCLPGNSTIL 1159 Query 507 NKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAI-SAKNRARTVAGVSICST 565 N++ + S +D + +K +P ++ LK I +A + R + Sbjct 1160 NEYDAVTMQIRENSLNVKDCVLDMSKSVPLPRESETTLKPVIRTAAEKPRKPGLLENLVA 1219 Query 566 MTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVE 610 M R F+ L + ++ KF+ + K ++ Sbjct 1220 MIKRNFNSPELVGVVDIEDTASLV-VDKFFDAYLIKEKKKPKNIP 1263 >sp|Q6XDK8|POLG_SVM10 Genome polyprotein OS=Sapporo virus (isolate GII/Human/Thailand/Mc10/2000) OX=234601 GN=ORF1 PE=1 SV=1 Length=2278 Score = 37.3 bits (85), Expect = 0.96, Method: Composition-based stats. Identities = 46/283 (16%), Positives = 90/283 (32%), Gaps = 39/283 (14%) Query 455 YYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNN-------LDKSAGFPFN 507 Y+ PT +++ + Y I ++ + L+KS Sbjct 1272 LKPYSEPTPGIP---PALLQRAATHTRTYLETIIGTHRSPNLSFSEACSLLEKSTSCGPF 1328 Query 508 KWGKARLYYDSMSYEDQDALFAY-------TKRNVIPT-ITQMNLKYAI-----SAKNRA 554 G+ Y+D L + R V P ++ LK + +A+ + Sbjct 1329 VAGQKGDYWDEDKQCYTGVLAEHLAKAWDAANRGVAPQNAYKLALKDELRPIEKNAQGKR 1388 Query 555 RTVAGVSICSTMTNRQFHQKL---LKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVEN 611 R + G +T+ + + L+++A +V I + ++ + ++ Sbjct 1389 RLLWGCDAGATLVATAAFKGVATRLQAVAPMTPVSVGINMDSY------QVEVLNESLKG 1442 Query 612 PHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGG 671 L DY K D + + +L R + L++ L+++V Sbjct 1443 GVLYCLDYSKWDSTQHPAVTAASLGILERLSEATPITTSAVELLSSPARGHLNDIVFITK 1502 Query 672 SLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNK 714 S G SG T+ NS+ N A V G Sbjct 1503 S------GLPSGMPFTSVINSL-NHMTYFAAAVLKAYEQHGAP 1538 >sp|Q04574|POL1_BAYMG Genome polyprotein 1 OS=Barley yellow mosaic virus (isolate Germany) OX=31728 PE=3 SV=1 Length=2412 Score = 37.3 bits (85), Expect = 0.96, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 52/144 (36%), Gaps = 9/144 (6%) Query 552 NRARTVAGVSICSTMTNRQFHQKLLKSIAATR-GATVVIGTSKFYGGWHNMLKTVYSDVE 610 + R I S + + K AT A +G +KF GW + + + Sbjct 1799 EKTRVFTASPITSLFAMKFYVDDFNKKFYATNLKAPHTVGINKFGRGWEKLHDKL--NRP 1856 Query 611 NPHLMGWDYPKCDRAM-PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC 669 D + D ++ P ++ ++ RKH + +E + + + + Sbjct 1857 GWLHGSGDGSRFDSSIDPFFFDVVKTI---RKHFLPSEHHKAIDLIYDEI--LNTTICLA 1911 Query 670 GGSLYVKPGGTSSGDATTAYANSV 693 G + K G +SG +T N++ Sbjct 1912 NGMVIRKNVGNNSGQPSTVVDNTL 1935 >sp|A1XIP9|POL1_TOTV RNA1 polyprotein OS=Tomato torrado virus (isolate Solanum lycopersicum/Spain/PRIToTV0301/-) OX=686948 PE=3 SV=1 Length=2158 Score = 37.3 bits (85), Expect = 1.00, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 51/161 (32%), Gaps = 7/161 (4%) Query 550 AKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGA-TVVIGTSKFYGGWHNMLKTVYSD 608 K + R + M R++ S+ A+ A +G + W +L + Sbjct 1315 GKRKTRLFEILPFHYNMLVRKYFLDFSASLMASHNALPCKVGINPGGIEWT-LLANGFRA 1373 Query 609 VENPHLMGWDYPKCDRAMPNM-LRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMV 667 V + DY D P + LV + S + A Sbjct 1374 VSDTG-FSADYSSFDGRAPIFAFQWFCDLVDDYYGSPPGSPDSNARHVLLMMAS--CHYT 1430 Query 668 MCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALL 708 +C ++ GG SG A T NS+ N + +LL Sbjct 1431 ICENKVFRLVGGMPSGFALTVIFNSLLNEF-YMRYAFISLL 1470 >sp|A7J3A2|RDRP_ROTYO RNA-directed RNA polymerase OS=Rotavirus A (strain RVA/Human/Japan/YO/1977/G3P1A[8]) OX=578832 PE=3 SV=1 Length=1088 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 41/204 (20%), Positives = 71/204 (35%), Gaps = 23/204 (11%) Query 611 NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQ----VLSEM 666 N ++ D + D + N +++ T + + N Q ++ Sbjct 513 NSMVLYTDVSQWDSSQHNTQPFRKGIIMGLDMLTNMTNDPKVVHTLNLYKQTQINLMDSY 572 Query 667 VMCGGSLYVKP---GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA--DKYVR 721 V +K G +SG+ T ANS+ N+ A + +LS NK + K +R Sbjct 573 VQIPDGDVIKKIQYGAVASGEKQTKAANSIANL-----ALIKTVLSRIANKYSFITKIIR 627 Query 722 NLQHRLYECLYRNRDVDTDFVNEF-----YAYLRKHFSMMILSDDAVVCFNSTYASQGLV 776 Y L N DV V E Y Y R + + L + Y + G + Sbjct 628 VDGDDNYAVLQFNTDVTKQMVQEVSDDVRYIYSRMNAKVKALVSTVGIEIAKRYIAGGKI 687 Query 777 ASIKNFKSVLYYQNNVFMSEAKCW 800 F++ + NN ++ W Sbjct 688 F----FRAGINLLNNEKRGQSTQW 707 >sp|P03302|POLG_POL3L Genome polyprotein OS=Poliovirus type 3 (strains P3/Leon/37 and P3/Leon 12A[1]B) OX=12088 PE=1 SV=3 Length=2206 Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 42/236 (18%), Positives = 84/236 (36%), Gaps = 29/236 (12%) Query 498 LDKSAGFPFNKWGKAR---LYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNR- 553 L SAG+P+ GK + L + ++ L +P +T + K + +K + Sbjct 1857 LSTSAGYPYVAMGKKKRDILNKQTRDTKEMQRLLD-AYGINLPLVTYV--KDELRSKTKV 1913 Query 554 ----ARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDV 609 +R + S+ ++ R L + G VV G++ G ++ + + Sbjct 1914 EQGKSRLIEASSLNDSVAMRMAFGNLYAAFHRNPG--VVTGSA--VGCDPDLFWSKIPVL 1969 Query 610 ENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC 669 L +DY D ++ +L + + + N + + C Sbjct 1970 MEEKLFAFDYTGYDASLSPA--WFEALKMVLEKIGFGDRVD-YIDYLNHSHHLYKNKIYC 2026 Query 670 GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQH 725 VK GG SG + T+ NS+ N + LL I +++ + + Sbjct 2027 -----VK-GGMPSGCSGTSIFNSMINNLI-----IRTLLLKTYKGIDLDHLKMIAY 2071 >sp|Q66479|POLG_HE71M Genome polyprotein OS=Human enterovirus 71 (strain 7423/MS/87) OX=103922 PE=1 SV=3 Length=2193 Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 35/238 (15%), Positives = 76/238 (32%), Gaps = 17/238 (7%) Query 484 DGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMN 543 + C + + +L SAG+P++ G + + D + +Y + + Sbjct 1829 EEACYGTDNLEAIDLHTSAGYPYSALGIKKRDILDPATRDVSKMKSYMDKYGLDLPYSTY 1888 Query 544 LKYAIS-----AKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGW 598 +K + K ++R + S+ ++ R L + A G + S Sbjct 1889 VKDELRSLDKIKKGKSRLIEASSLNDSVYLRMTFGHLYEVFHANPGT---VTGSAVGCNP 1945 Query 599 HNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANE 658 + + L +DY D ++ + +L + + + N Sbjct 1946 DVFWSKLPILLPGS-LFAFDYSGYDASLSPV--WFRALEVVLREIGYSEEAVSLIEGINH 2002 Query 659 CAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA 716 + C GG SG + T+ NS+ N T + D +++ Sbjct 2003 THHIYRNKTYCV------LGGMPSGCSGTSIFNSMINNIIIRTLLIKTFKGIDLDELN 2054 >sp|A4ZCW8|RDRP_ROTHW RNA-directed RNA polymerase OS=Rotavirus A (strain RVA/Human/United States/Wa/1974/G1P1A[8]) OX=10962 PE=3 SV=1 Length=1088 Score = 36.6 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 39/204 (19%), Positives = 72/204 (35%), Gaps = 23/204 (11%) Query 611 NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQ----VLSEM 666 N ++ D + D + N +++ + + + + N Q ++ Sbjct 513 NSMVLYTDVSQWDSSQHNTQPFRKGIIMGLDMLSNMTNDPKVVQTLNLYKQTQINLMDSY 572 Query 667 VMCGGSLYVKP---GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA--DKYVR 721 V +K G +SG+ T ANS+ N+ A + +LS NK + K +R Sbjct 573 VQIPDGNVIKKIQYGAVASGEKQTKAANSIANL-----ALIKTVLSRIANKYSFITKIIR 627 Query 722 NLQHRLYECLYRNRDVDTDFVNEF-----YAYLRKHFSMMILSDDAVVCFNSTYASQGLV 776 Y L N DV V + Y Y R + + L + Y + G + Sbjct 628 VDGDDNYAVLQFNTDVTKQMVQDVSNDVRYIYSRMNAKVKALVSTVGIEIAKRYIAGGKI 687 Query 777 ASIKNFKSVLYYQNNVFMSEAKCW 800 F++ + NN ++ W Sbjct 688 F----FRAGINLLNNEKRGQSTQW 707 >sp|B1NKR3|RDRP_ROTAD RNA-directed RNA polymerase OS=Rotavirus A (strain RVA/Human/United States/D/1974/G1P1A[8]) OX=578831 PE=3 SV=1 Length=1088 Score = 36.6 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 39/204 (19%), Positives = 72/204 (35%), Gaps = 23/204 (11%) Query 611 NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQ----VLSEM 666 N ++ D + D + N +++ + + + + N Q ++ Sbjct 513 NSMVLYTDVSQWDSSQHNTQPFRKGIIMGLDMLSNMTNDPKVVQTLNLYKQTQINLMDSY 572 Query 667 VMCGGSLYVKP---GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA--DKYVR 721 V +K G +SG+ T ANS+ N+ A + +LS NK + K +R Sbjct 573 VQIPDGNVIKKIQYGAVASGEKQTKAANSIANL-----ALIKTVLSRIANKYSFITKIIR 627 Query 722 NLQHRLYECLYRNRDVDTDFVNEF-----YAYLRKHFSMMILSDDAVVCFNSTYASQGLV 776 Y L N DV V + Y Y R + + L + Y + G + Sbjct 628 VDGDDNYAVLQFNTDVTKQMVQDVSNDVRYIYSRMNAKVKALVSTVGIEIAKRYIAGGKI 687 Query 777 ASIKNFKSVLYYQNNVFMSEAKCW 800 F++ + NN ++ W Sbjct 688 F----FRAGINLLNNEKRGQSTQW 707 >sp|P17699|RDRP_ROTPG RNA-directed RNA polymerase OS=Rotavirus A (strain RVA/Pig/United States/Gottfried/1983/G4P2B[6]) OX=10917 PE=3 SV=1 Length=1088 Score = 36.6 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 40/204 (20%), Positives = 71/204 (35%), Gaps = 23/204 (11%) Query 611 NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQ----VLSEM 666 N ++ D + D + N +++ + + + N Q ++ Sbjct 513 NSMVLYTDVSQWDSSQHNTQPFRKGIIMGLDMLANMTNDPKVVQTLNLYKQTQINLMDSY 572 Query 667 VMCGGSLYVKP---GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA--DKYVR 721 V +K G +SG+ T ANS+ N+ A + +LS NK + K +R Sbjct 573 VQIPDGDVIKKIQYGAVASGEKQTKAANSIANL-----ALIKTVLSRIANKYSFITKIIR 627 Query 722 NLQHRLYECLYRNRDVDTDFVNEF-----YAYLRKHFSMMILSDDAVVCFNSTYASQGLV 776 Y L N DV V E Y Y R + + L + Y + G + Sbjct 628 VDGDDNYAVLQFNTDVTKQMVQEVSNDVRYIYSRMNAKVKALVSTVGIEIAKRYIAGGKI 687 Query 777 ASIKNFKSVLYYQNNVFMSEAKCW 800 F++ + NN ++ W Sbjct 688 F----FRAGINLLNNEKRGQSTQW 707 >sp|B1NKU1|RDRP_ROTWI RNA-directed RNA polymerase OS=Rotavirus A (isolate RVA/Human/United States/WI61/1983/G9P1A[8]) OX=578830 PE=3 SV=1 Length=1088 Score = 36.6 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 39/204 (19%), Positives = 72/204 (35%), Gaps = 23/204 (11%) Query 611 NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQ----VLSEM 666 N ++ D + D + N +++ + + + + N Q ++ Sbjct 513 NSMVLYTDVSQWDSSQHNTQPFRKGIIMGLDMLSNMTNDPKVVQTLNLYKQTQINLMDSY 572 Query 667 VMCGGSLYVKP---GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA--DKYVR 721 V +K G +SG+ T ANS+ N+ A + +LS NK + K +R Sbjct 573 VQIPDGNVIKKIQYGAVASGEKQTKAANSIANL-----ALIKTVLSRIANKYSFITKIIR 627 Query 722 NLQHRLYECLYRNRDVDTDFVNEF-----YAYLRKHFSMMILSDDAVVCFNSTYASQGLV 776 Y L N DV V + Y Y R + + L + Y + G + Sbjct 628 VDGDDNYAVLQFNTDVTKQMVQDVSNDVRYIYSRMNAKVKALVSTVGIEIAKRYIAGGKI 687 Query 777 ASIKNFKSVLYYQNNVFMSEAKCW 800 F++ + NN ++ W Sbjct 688 F----FRAGINLLNNEKRGQSTQW 707 >sp|Q30XF7|TGT_OLEA2 Queuine tRNA-ribosyltransferase OS=Oleidesulfovibrio alaskensis (strain ATCC BAA-1058 / DSM 17464 / G20) OX=207559 GN=tgt PE=3 SV=1 Length=377 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 59/160 (37%), Gaps = 16/160 (10%) Query 678 GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDV 737 GG S G++ T + +++ + A+ L G + N +++C+ R+ Sbjct 217 GGLSVGESKTEMMDILYHTAPMLPAHKPRYLMGVGTPLDIINGINAGIDMFDCVLPTRNA 276 Query 738 DTDFVNEFYA---YLRKHFSMMILSDDAVV-----CFNSTYASQGLVASIKNFKSVLYYQ 789 + R+ F+ DD + C+ S+ + + + + +L Y+ Sbjct 277 RNGTLYTSAGKINIKRREFA----EDDGPLDPNCSCYTCRTFSRAYLRHLFHAQEILSYR 332 Query 790 NNVFMSEAKCWTETDLTKGPHEFCSQHTM-LVKQGDDYVY 828 N + DL +G E +Q T K D +Y Sbjct 333 LNSIHNLT---YFLDLVRGAREAIAQGTFAEYKSRYDAIY 369 >sp|P03303|POLG_HRV14 Genome polyprotein OS=Human rhinovirus 14 OX=12131 PE=1 SV=3 Length=2179 Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 44/200 (22%), Positives = 75/200 (38%), Gaps = 19/200 (10%) Query 501 SAGFPFNKWG-KARLYYDSMSYEDQDALFAYTKRNV-IPTITQMNLKYAISAKNR---AR 555 SAGFP+ G K R + + + + F K + +P +T + + K R +R Sbjct 1834 SAGFPYVSLGIKKRDILNKETQDTEKMKFYLDKYGIDLPLVTYIKDELRSVDKVRLGKSR 1893 Query 556 TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM 615 + S+ ++ R L K+ G V+ S V + + HLM Sbjct 1894 LIEASSLNDSVNMRMKLGNLYKAFHQNPG---VLTGSAVGCDPDVFWS-VIPCLMDGHLM 1949 Query 616 GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYV 675 +DY D ++ + + VL + SL + N + +YV Sbjct 1950 AFDYSNFDASLSPVWFVCLEKVLTKLGFAGSSLIQS---ICNTHH-------IFRDEIYV 1999 Query 676 KPGGTSSGDATTAYANSVFN 695 GG SG + T+ NS+ N Sbjct 2000 VEGGMPSGCSGTSIFNSMIN 2019 >sp|P22055|POLG_CXA21 Genome polyprotein OS=Coxsackievirus A21 (strain Coe) OX=12070 PE=1 SV=3 Length=2206 Score = 36.2 bits (82), Expect = 1.8, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 85/236 (36%), Gaps = 29/236 (12%) Query 498 LDKSAGFPFNKWGKAR---LYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNR- 553 L SAG+P+ GK + L + ++ L T +P +T + K + +K + Sbjct 1857 LSTSAGYPYVAMGKKKRDILDKQTRDTKEMQRLLD-TYGINLPLVTYV--KDELRSKTKV 1913 Query 554 ----ARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDV 609 +R + S+ ++ R L + G VV G++ G ++ + + Sbjct 1914 EQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPG--VVTGSA--VGCDPDLFWSKIPVL 1969 Query 610 ENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC 669 L +DY D ++ +L + + + + N + C Sbjct 1970 MEEKLFAFDYTGYDASLSPA--WFEALKMVLEKIGFGNRVD-YIDYLNHSHHLYKNKTYC 2026 Query 670 GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQH 725 VK GG SG + T+ NS+ N + LL I +++ + + Sbjct 2027 -----VK-GGMPSGCSGTSIFNSMINNLI-----IRTLLLRTYKGIDLDHLKMIAY 2071 >sp|P03300|POLG_POL1M Genome polyprotein OS=Poliovirus type 1 (strain Mahoney) OX=12081 PE=1 SV=3 Length=2209 Score = 36.2 bits (82), Expect = 1.8, Method: Composition-based stats. Identities = 42/236 (18%), Positives = 78/236 (33%), Gaps = 29/236 (12%) Query 498 LDKSAGFPFNKWGKAR---LYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNR- 553 L SAG+P+ GK + L + ++ L T +P +T + K + +K + Sbjct 1860 LSTSAGYPYVAMGKKKRDILNKQTRDTKEMQKLLD-TYGINLPLVTYV--KDELRSKTKV 1916 Query 554 ----ARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDV 609 +R + S+ ++ R L + G VI S + Sbjct 1917 EQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPG---VITGSAVGCDPDLFWS-KIPVL 1972 Query 610 ENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC 669 L +DY D ++ +L + + + N + C Sbjct 1973 MEEKLFAFDYTGYDASLSPA--WFEALKMVLEKIGFGDRVD-YIDYLNHSHHLYKNKTYC 2029 Query 670 GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQH 725 VK GG SG + T+ NS+ N + LL I +++ + + Sbjct 2030 -----VK-GGMPSGCSGTSIFNSMINNLI-----IRTLLLKTYKGIDLDHLKMIAY 2074 >sp|P06210|POLG_POL2L Genome polyprotein OS=Poliovirus type 2 (strain Lansing) OX=12084 PE=1 SV=3 Length=2207 Score = 36.2 bits (82), Expect = 1.8, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 84/236 (36%), Gaps = 29/236 (12%) Query 498 LDKSAGFPFNKWGKAR---LYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNR- 553 L SAG+P+ GK + L + ++ L T +P +T + K + +K + Sbjct 1858 LSTSAGYPYVAMGKKKRDILNKQTRDTKEMQRLLD-TYGINLPLVTYV--KDELRSKTKV 1914 Query 554 ----ARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDV 609 +R + S+ ++ R L + G VV G++ G ++ + + Sbjct 1915 EQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPG--VVTGSA--VGCDPDLFWSKIPVL 1970 Query 610 ENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC 669 L +DY D ++ +L + + + N + C Sbjct 1971 MEEKLFAFDYTGYDASLSPA--WFEALKMVLEKIGFGDRVD-YIDYLNHSHHLYKNKTYC 2027 Query 670 GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQH 725 VK GG SG + T+ NS+ N + LL I +++ + + Sbjct 2028 -----VK-GGMPSGCSGTSIFNSMINNLI-----IRTLLLKTYKGIDLDHLKMIAY 2072 >sp|P06209|POLG_POL32 Genome polyprotein OS=Poliovirus type 3 (strain 23127) OX=12087 PE=3 SV=3 Length=2206 Score = 36.2 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 84/236 (36%), Gaps = 29/236 (12%) Query 498 LDKSAGFPFNKWGKAR---LYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNR- 553 L SAG+P+ GK + L + ++ L T +P +T + K + +K + Sbjct 1857 LSTSAGYPYVTMGKKKRDILNKQTRDTKEMQRLLD-TYGINLPLVTYV--KDELRSKTKV 1913 Query 554 ----ARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDV 609 +R + S+ ++ R L + G VV G++ G ++ + + Sbjct 1914 EQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPG--VVTGSA--VGCDPDLFWSKIPVL 1969 Query 610 ENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC 669 L +DY D ++ +L + + + N + C Sbjct 1970 MEEKLFAFDYTGYDASLSPA--WFEALKMVLEKIGFGDRVD-YIDYLNHSHHLYKNKTYC 2026 Query 670 GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQH 725 VK GG SG + T+ NS+ N + LL I +++ + + Sbjct 2027 -----VK-GGMPSGCSGTSIFNSMINNLI-----IRTLLLKTYKGIDLDHLKMIAY 2071 >sp|P03301|POLG_POL1S Genome polyprotein OS=Poliovirus type 1 (strain Sabin) OX=12082 PE=1 SV=3 Length=2209 Score = 36.2 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 42/236 (18%), Positives = 78/236 (33%), Gaps = 29/236 (12%) Query 498 LDKSAGFPFNKWGKAR---LYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNR- 553 L SAG+P+ GK + L + ++ L T +P +T + K + +K + Sbjct 1860 LSTSAGYPYVAMGKKKRDILNKQTRDTKEMQKLLD-TYGINLPLVTYV--KDELRSKTKV 1916 Query 554 ----ARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDV 609 +R + S+ ++ R L + G VI S + Sbjct 1917 EQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPG---VITGSAVGCDPDLFWS-KIPVL 1972 Query 610 ENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC 669 L +DY D ++ +L + + + N + C Sbjct 1973 MEEKLFAFDYTGYDASLSPA--WFEALEMVLEKIGFGDRVD-YIDYLNHSHHLYKNKTYC 2029 Query 670 GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQH 725 VK GG SG + T+ NS+ N + LL I +++ + + Sbjct 2030 -----VK-GGMPSGCSGTSIFNSMINNLI-----IRTLLLKTYKGIDLDHLKMIAY 2074 >sp|B1NKT7|RDRP_ROTHT RNA-directed RNA polymerase OS=Rotavirus A (strain RVA/Human/United Kingdom/ST3/1975/G4P2A[6]) OX=10960 PE=3 SV=1 Length=1088 Score = 35.8 bits (81), Expect = 2.3, Method: Composition-based stats. Identities = 39/204 (19%), Positives = 72/204 (35%), Gaps = 23/204 (11%) Query 611 NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQ----VLSEM 666 N ++ D + D + N +++ + + + + N Q ++ Sbjct 513 NSMVLYTDVSQWDSSQHNTQPFRKGIIMGLDILSNMTNDPKVVQTLNLYKQTQINLMDSY 572 Query 667 VMCGGSLYVKP---GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA--DKYVR 721 V +K G +SG+ T ANS+ N+ A + +LS NK + K +R Sbjct 573 VQIPDGNVIKKIQYGAVASGEKQTKAANSIANL-----ALIKTVLSRIANKYSFITKIIR 627 Query 722 NLQHRLYECLYRNRDVDTDFVNEF-----YAYLRKHFSMMILSDDAVVCFNSTYASQGLV 776 Y L N DV V + Y Y R + + L + Y + G + Sbjct 628 VDGDDNYAVLQFNTDVTKQMVQDVSNDVRYIYSRMNAKVKALVSTVGIEIAKRYIAGGKI 687 Query 777 ASIKNFKSVLYYQNNVFMSEAKCW 800 F++ + NN ++ W Sbjct 688 F----FRAGINLLNNEKRGQSTQW 707 >sp|Q9QNB3|RDRP_ROTHK RNA-directed RNA polymerase OS=Rotavirus A (strain RVA/Human/Japan/KU/1995/G1P1A[8]) OX=10952 PE=2 SV=1 Length=1088 Score = 35.8 bits (81), Expect = 2.3, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 74/204 (36%), Gaps = 23/204 (11%) Query 611 NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMV--- 667 N ++ D + D + N +++ + + + + N Q ++ Sbjct 513 NSMVLYTDVSQWDSSQHNTQPFRKGIIMGLDMLSNMTNDPKVVQALNLYKQTQINLMDSY 572 Query 668 --MCGGSLYVKP--GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA--DKYVR 721 + G++ K G +SG+ T ANS+ N+ A + +LS NK + K +R Sbjct 573 VQIPDGNVIKKNQYGAVASGEKQTKAANSIANL-----ALIKTVLSRIANKYSFITKIIR 627 Query 722 NLQHRLYECLYRNRDVDTDFVNEF-----YAYLRKHFSMMILSDDAVVCFNSTYASQGLV 776 Y L N D+ + + Y Y R + + L + Y + G + Sbjct 628 VSGDDNYAVLQFNTDLTKQMIQDVSNDVRYIYFRMNAKVKALVSTVGIEIAKRYLAGGKI 687 Query 777 ASIKNFKSVLYYQNNVFMSEAKCW 800 F++ + NN ++ W Sbjct 688 F----FRAGINLLNNEKRGQSTQW 707 >sp|P36290|POLG_CXA24 Genome polyprotein OS=Coxsackievirus A24 (strain EH24/70) OX=36404 PE=3 SV=3 Length=2214 Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 84/236 (36%), Gaps = 29/236 (12%) Query 498 LDKSAGFPFNKWGKAR---LYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNR- 553 L SAG+P+ GK + L + ++ L T +P +T + K + +K + Sbjct 1865 LSTSAGYPYVAMGKKKRDILNKQTRDTKEMQRLLD-TYGINLPLVTYV--KDELRSKTKV 1921 Query 554 ----ARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDV 609 +R + S+ ++ R L + G VV G++ G ++ + + Sbjct 1922 EQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPG--VVTGSA--VGCDPDLFWSKIPVL 1977 Query 610 ENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC 669 L +DY D ++ +L + + + N + C Sbjct 1978 MEEKLFAFDYTGYDASLSPA--WFEALKMVLEKIGFGDRVD-YIDYLNHSHHLYKNKTYC 2034 Query 670 GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQH 725 VK GG SG + T+ NS+ N + LL I +++ + + Sbjct 2035 -----VK-GGMPSGCSGTSIFNSMINNLI-----IRTLLLKTYKGIDLDHLKMIAY 2079 >sp|C6KEF6|POLG_HKV1 Genome polyprotein OS=Human klassevirus 1 OX=655603 PE=1 SV=1 Length=2370 Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 42/215 (20%), Positives = 79/215 (37%), Gaps = 19/215 (9%) Query 498 LDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVI---PTITQMNLK--YAISAKN 552 L +S G+P+ G++R L +V I Q LK +AK Sbjct 2004 LSQSPGYPWTTQGRSRRSLFDEDGNPVPEL-QKAIDSVWDGGSYIYQSFLKDELRPTAKA 2062 Query 553 RA---RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDV 609 RA R V I + + R+ L+ + G + G++ + + +S Sbjct 2063 RAGKTRIVEAAPIQAIVVGRRLLGSLINHLQ---GNPLQYGSAVGCNPDIHWTQIFHSLT 2119 Query 610 ENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC 669 ++ DY D +P S++L+ + S S + R+ + + + + Sbjct 2120 PFSNVWSIDYSCFDATIP-------SVLLSAIASRIASRSDQPGRVLDYLSYTTTSYHVY 2172 Query 670 GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANV 704 Y GG SG T+ N++ N ++A + Sbjct 2173 DSLWYTMVGGNPSGCVGTSILNTIANNIAIISAMM 2207 >sp|Q8V5E0|POL1_BRAV RNA1 polyprotein OS=Blackcurrant reversion association virus OX=65743 PE=3 SV=1 Length=2094 Score = 35.8 bits (81), Expect = 2.4, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 57/155 (37%), Gaps = 8/155 (5%) Query 545 KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT 604 K I K R ++ + + + H + +G + + W +L+ Sbjct 1591 KICIKPKTRLFSILPLEFNLLLRKKFLHFSSSLQMHRDT-LPTQVGVNPYSREWGELLQR 1649 Query 605 VYSDVENPHLMGWDYPKCDRAMP-NMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL 663 + ++ + DY D + +L + +++ S + + RL N ++ Sbjct 1650 L--RAQSSVAINCDYASFDGLLTGQILEKIGTMI---NKMYIGSEASKIQRL-NLLMSIV 1703 Query 664 SEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQ 698 + +CG +Y G SG A T NS+FN Sbjct 1704 NRKSICGARVYEVRAGIPSGCALTVLLNSIFNEFL 1738 >sp|Q09725|MIS4_SCHPO Sister chromatid cohesion protein mis4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mis4 PE=1 SV=2 Length=1587 Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 5/94 (5%) Query 370 ELLVYAADPAMHAASGNLLLDKRTT----CFSVAALTNNVAFQTVKPGNFNKDFYDFAVS 425 L++ + +S N LD + ++ L+ P NFN D F S Sbjct 619 NLVMTVTNDKQAVSSKNAALDLISLIVNKVLALFDLSLFEKHNIPAPTNFN-DIISFIPS 677 Query 426 KGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYN 459 E S V HF+F G+ ++ + Y YN Sbjct 678 ITRLNELSQVSFNHFYFLCKGDISLENILPYNYN 711 >sp|P11398|PYR1_MASLA Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod OS=Mastigocladus laminosus OX=83541 GN=cpcC PE=1 SV=3 Length=286 Score = 34.6 bits (78), Expect = 3.5, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 11/119 (9%) Query 681 SSGDATTAYANSVF------NICQAVTANVNA-LLSTDGNKIADKYVRNLQHRLYECLYR 733 +S + A N+V+ + A V+A L DGN ++VR++ LY+ Sbjct 27 ASREEVEAVINAVYRHVLGNDYIMASERLVSAESLLRDGNLTVREFVRSVAK---SELYK 83 Query 734 NRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNST-YASQGLVASIKNFKSVLYYQNN 791 + F F KH D++ + F+ Y ++G A I ++ + YQNN Sbjct 84 KKFFYNSFQTRFIELNYKHLLGRAPYDESEIVFHLDLYQNKGYDAEIDSYIDSVEYQNN 142 >sp|B9E0V5|RSMH_CLOK1 Ribosomal RNA small subunit methyltransferase H OS=Clostridium kluyveri (strain NBRC 12016) OX=583346 GN=rsmH PE=3 SV=1 Length=309 Score = 34.3 bits (77), Expect = 4.5, Method: Composition-based stats. Identities = 17/82 (21%), Positives = 32/82 (39%), Gaps = 3/82 (4%) Query 542 MNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAA-TRGATVVIGTSKFYGGWHN 600 + LK+ RT + I + + + +A G + I T F+ Sbjct 190 IPLKFQKEGHPAKRTFQAIRIEVNEELKILDKAVEDGVANLNTGGRIAIIT--FHSLEDR 247 Query 601 MLKTVYSDVENPHLMGWDYPKC 622 ++K+ + +ENP D+P C Sbjct 248 IIKSKFKMLENPCTCPADFPIC 269 >sp|B1KEK5|PYRC_SHEWM Dihydroorotase OS=Shewanella woodyi (strain ATCC 51908 / MS32) OX=392500 GN=pyrC PE=3 SV=1 Length=344 Score = 34.6 bits (78), Expect = 4.6, Method: Composition-based stats. Identities = 44/216 (20%), Positives = 80/216 (37%), Gaps = 26/216 (12%) Query 443 AQDGNAAISDYDYYRYNLPTMCDIRQLLFVV-EVVDKYFDCYDGGCINANQVIVNNLDKS 501 + +AA+ D TM +I LL V EV + + D +D + I NL + Sbjct 105 TTNSDAAVKGLDALFPIFETMAEIGMLLLVHGEVTESHIDIFDREAL----FIERNLSRI 160 Query 502 AGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGV- 560 + + + ++ ++ ++ ++ NV TIT +L V GV Sbjct 161 ----VDAFPQLKVVFEHITTKEAAEFVTSASDNVAATITPQHLLL----NRNDLLVGGVR 212 Query 561 --SICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWD 618 + C + R HQ+ L++ AT G+SKF+ G + + G Sbjct 213 PHNFCLPVLKRNIHQEALRAAVAT-------GSSKFFLGTDSAPHEKHRKESACGCAGC- 264 Query 619 YPKCDRAMPNMLRIMASL-VLARKHTTCCSLSHRFY 653 Y A+ ++ L V+ + + FY Sbjct 265 YSAWS-ALELYAQVFDDLGVIEKLEGFASTHGPDFY 299 >sp|P17468|RDRP_ROTRF RNA-directed RNA polymerase OS=Rotavirus A (strain RVA/Cow/France/RF/1975/G6P6[1]) OX=10933 PE=1 SV=1 Length=1088 Score = 35.0 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 38/204 (19%), Positives = 70/204 (34%), Gaps = 23/204 (11%) Query 611 NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQ----VLSEM 666 N ++ D + D + N +++ + R + N Q ++ Sbjct 513 NSMVLYTDVSQWDSSQHNTQPFRKGIIMGLDMLANMTNDARVIQTLNLYKQTQINLMDSY 572 Query 667 VMCGGSLYVKP---GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA--DKYVR 721 V +K G +SG+ T ANS+ N+ A + +LS NK + K +R Sbjct 573 VQIPDGNVIKKIQYGAVASGEKQTKAANSIANL-----ALIKTVLSRISNKYSFATKIIR 627 Query 722 NLQHRLYECLYRNRDVDTDFVNEFY-----AYLRKHFSMMILSDDAVVCFNSTYASQGLV 776 Y L N +V V + Y R + + L + Y + G + Sbjct 628 VDGDDNYAVLQFNTEVTEQMVQDVSNDVRETYARMNAKVKALVSTVGIEIAKRYIAGGKI 687 Query 777 ASIKNFKSVLYYQNNVFMSEAKCW 800 F++ + NN ++ W Sbjct 688 F----FRAGINLLNNEKRGQSTQW 707 >sp|Q82081|POLG_HRV3 Genome polyprotein OS=Human rhinovirus 3 OX=44130 PE=1 SV=4 Length=2178 Score = 35.0 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 46/232 (20%), Positives = 79/232 (34%), Gaps = 28/232 (12%) Query 501 SAGFPFNKWGKARLYYDSMSYEDQDA---LFAYTKRNV-IPTITQMNLKYAISAKNR--- 553 SAG+P+ G + D ++ E QD F K + +P +T + + K R Sbjct 1833 SAGYPYVSLGIKKR--DILNKETQDVEKMKFYLDKYGIDLPLVTYIKDELRSVDKVRLGK 1890 Query 554 ARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPH 613 +R + S+ ++ R L K+ G +I S V + + H Sbjct 1891 SRLIEASSLNDSVNMRMKLGNLYKAFHQNPG---IITESAVGCDPDVFWS-VIPCLMDGH 1946 Query 614 LMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSL 673 LM +DY D ++ + L S + N + + Sbjct 1947 LMAFDYSNFDASLSPV--WFECLEKVLNKLGFKQPS-LIQSICNTHH-------IFRDEI 1996 Query 674 YVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQH 725 Y GG SG + T+ NS+ N + L+ I +R L + Sbjct 1997 YRVEGGMPSGCSGTSIFNSMINNII-----IRTLILDAYKGIDLDSLRILAY 2043 >sp|B1NKS9|RDRP_ROTHP RNA-directed RNA polymerase OS=Rotavirus A (strain RVA/Human/United States/P/1974/G3P1A[8]) OX=10957 PE=3 SV=1 Length=1088 Score = 35.0 bits (79), Expect = 4.8, Method: Composition-based stats. Identities = 39/204 (19%), Positives = 72/204 (35%), Gaps = 23/204 (11%) Query 611 NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQ----VLSEM 666 N ++ D + D + N +++ + + + + N Q ++ Sbjct 513 NSMVLYTDVSQWDSSQHNTQPFRKGIIMGLDMLSNMTNDPKVAQTLNLYKQTQINLMDSY 572 Query 667 VMCGGSLYVKP---GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA--DKYVR 721 V +K G +SG+ T ANS+ N+ A + +LS NK + K +R Sbjct 573 VQIPDGNVIKKIQYGAVASGEKQTKAANSIANL-----ALIKMVLSRIANKYSFITKIIR 627 Query 722 NLQHRLYECLYRNRDVDTDFVNEF-----YAYLRKHFSMMILSDDAVVCFNSTYASQGLV 776 Y L N DV V + Y Y R + + L + Y + G + Sbjct 628 VDGDDNYAVLQFNTDVTKQMVQDVSNDVRYIYSRMNAKVKALVSTVGIEIAKRYIAGGKI 687 Query 777 ASIKNFKSVLYYQNNVFMSEAKCW 800 F++ + NN ++ W Sbjct 688 F----FRAGINLLNNEKRGQSTQW 707 >sp|Q6W8W4|POL1_RRVC RNA1 polyprotein OS=Raspberry ringspot virus (strain cherry) OX=281921 PE=3 SV=1 Length=2367 Score = 34.6 bits (78), Expect = 5.4, Method: Composition-based stats. Identities = 26/115 (23%), Positives = 46/115 (40%), Gaps = 10/115 (9%) Query 582 TRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARK 641 + +V+G+ + W ++ + +N + DY K D M + + + R Sbjct 1807 SSQVGIVVGSRE----WDDLAARL-RSKKNDKMYCCDYSKFDGLMTPQIVHAITNIYERM 1861 Query 642 HTTCCSLSH-RFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFN 695 + +S R L C ++ +CG +Y G SG A T NS+FN Sbjct 1862 FSGNDGMSQFRQNLLMGICNRI----SICGSQVYRVEAGMPSGFALTVDFNSIFN 1912 >sp|Q3ZK55|RDRP_ROT41 RNA-directed RNA polymerase OS=Rotavirus A (isolate RVA/Human/Belgium/B4106/2000/G3P11[14]) OX=578843 PE=3 SV=1 Length=1088 Score = 34.3 bits (77), Expect = 6.5, Method: Composition-based stats. Identities = 36/204 (18%), Positives = 70/204 (34%), Gaps = 23/204 (11%) Query 611 NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQ----VLSEM 666 N ++ D + D + N +++ + R + N Q ++ Sbjct 513 NAMVLYTDVSQWDSSQHNTQPFRKGIIMGLDMLANMTNDARVIQTLNLYKQTQINLMDSY 572 Query 667 VMCGGSLYVKP---GGTSSGDATTAYANSVFNICQAVTANVNALLS--TDGNKIADKYVR 721 V +K G +SG+ T ANS+ N+ A + +LS ++ + K +R Sbjct 573 VQIPDGNIIKKIQYGAVASGEKQTKAANSIANL-----ALIKTVLSRISNKHSFVTKIIR 627 Query 722 NLQHRLYECLYRNRDVDTDFVNEFY-----AYLRKHFSMMILSDDAVVCFNSTYASQGLV 776 Y L N +V V + Y R + + L + Y + G + Sbjct 628 VDGDDNYAVLQFNTEVTKQMVQDVSNDVRETYARMNAKVKALVSTVGIEIAKRYIAGGKI 687 Query 777 ASIKNFKSVLYYQNNVFMSEAKCW 800 F++ + NN ++ W Sbjct 688 F----FRAGINLLNNEKRGQSTQW 707 >sp|A7J398|RDRP_ROTBN RNA-directed RNA polymerase OS=Rotavirus A (strain RVA/Cow/United States/NCDV-Lincoln/1969/G6P6[1]) OX=36439 PE=3 SV=1 Length=1088 Score = 34.3 bits (77), Expect = 7.0, Method: Composition-based stats. Identities = 38/204 (19%), Positives = 70/204 (34%), Gaps = 23/204 (11%) Query 611 NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQ----VLSEM 666 N ++ D + D + N +++ + R + N Q ++ Sbjct 513 NSMVLYTDVSQWDSSQHNTQPFRKGIIMGLDMLANMTNDARVIQTLNLYKQTQINLMDSY 572 Query 667 VMCGGSLYVKP---GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA--DKYVR 721 V +K G +SG+ T ANS+ N+ A + +LS NK + K +R Sbjct 573 VQIPDGNVIKKIQYGAVASGEKQTKAANSIANL-----ALIKTVLSRISNKYSFATKIIR 627 Query 722 NLQHRLYECLYRNRDVDTDFVNEFY-----AYLRKHFSMMILSDDAVVCFNSTYASQGLV 776 Y L N +V V + Y R + + L + Y + G + Sbjct 628 VDGDDNYAVLQFNTEVTKQMVQDVSNDVRETYARMNAKVKALVSTVGIEIAKRYIAGGKI 687 Query 777 ASIKNFKSVLYYQNNVFMSEAKCW 800 F++ + NN ++ W Sbjct 688 F----FRAGINLLNNEKRGQSTQW 707 >sp|P21615|RDRP_ROTBU RNA-directed RNA polymerase OS=Rotavirus A (strain RVA/Cow/United Kingdom/UK/1975/G6P7[5]) OX=10934 PE=2 SV=1 Length=1088 Score = 34.3 bits (77), Expect = 7.1, Method: Composition-based stats. Identities = 38/204 (19%), Positives = 70/204 (34%), Gaps = 23/204 (11%) Query 611 NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQ----VLSEM 666 N ++ D + D + N +++ + R + N Q ++ Sbjct 513 NAMVLYTDVSQWDSSQHNTQPFRKGIIMGLDMLANMTNDARVIQTLNLYKQTQINLMDSY 572 Query 667 VMCGGSLYVKP---GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA--DKYVR 721 V +K G +SG+ T ANS+ N+ A + +LS NK + K +R Sbjct 573 VQIPDGNVIKKIQYGAVASGEKQTKAANSIANL-----ALIKTVLSRISNKYSFATKIIR 627 Query 722 NLQHRLYECLYRNRDVDTDFVNEFY-----AYLRKHFSMMILSDDAVVCFNSTYASQGLV 776 Y L N +V V + Y R + + L + Y + G + Sbjct 628 VDGDDNYAVLQFNTEVTKQMVQDVSNDVRETYARMNAKVKALVSTVGIEIAKRYIAGGKI 687 Query 777 ASIKNFKSVLYYQNNVFMSEAKCW 800 F++ + NN ++ W Sbjct 688 F----FRAGINLLNNEKRGQSTQW 707 >sp|B2BMF7|RDRP_ROTW3 RNA-directed RNA polymerase OS=Rotavirus A (strain RVA/Cow/United States/WC3/1981/G6P7[5]) OX=578828 PE=3 SV=1 Length=1088 Score = 34.3 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 38/204 (19%), Positives = 70/204 (34%), Gaps = 23/204 (11%) Query 611 NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQ----VLSEM 666 N ++ D + D + N +++ + R + N Q ++ Sbjct 513 NSMVLYTDVSQWDSSQHNTQPFRKGIIMGLDMLANMTNDARVIQTLNLYKQTQINLMDSY 572 Query 667 VMCGGSLYVKP---GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA--DKYVR 721 V +K G +SG+ T ANS+ N+ A + +LS NK + K +R Sbjct 573 VQIPDGDVIKKIQYGAVASGEKQTKAANSIANL-----ALIKTVLSRISNKYSFATKIIR 627 Query 722 NLQHRLYECLYRNRDVDTDFVNEFY-----AYLRKHFSMMILSDDAVVCFNSTYASQGLV 776 Y L N +V V + Y R + + L + Y + G + Sbjct 628 VDGDDNYAVLQFNTEVTKQMVQDVSNDVRETYARMNAKVKALVSTVGIEIAKRYIAGGKI 687 Query 777 ASIKNFKSVLYYQNNVFMSEAKCW 800 F++ + NN ++ W Sbjct 688 F----FRAGINLLNNEKRGQSTQW 707 >sp|A4G060|MFNA_METM5 Probable L-tyrosine/L-aspartate decarboxylase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) OX=402880 GN=mfnA PE=3 SV=1 Length=384 Score = 33.9 bits (76), Expect = 8.0, Method: Composition-based stats. Identities = 32/135 (24%), Positives = 51/135 (38%), Gaps = 25/135 (19%) Query 91 KDCPAVAKHDFFKFRIDGDMVP-HISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTY 149 K + + F F DM+ ++ R LT+Y D+ + +R + E + + + I+ Sbjct 107 KQNIIIPETAHFSFDKARDMMDLNVVRPPLTEYFTMDVKF-IRDYVEDSKNEISGIVGIA 165 Query 150 NCCDDDYFNK--KDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTL 207 C + + + VEN +L V A G V + F D Sbjct 166 GCTELGSIDNIYELSKIAVENDILLHVDAAFGGFV-------IPFLD------------- 205 Query 208 DNQDLNGNWYDFGDF 222 D L G YDF DF Sbjct 206 DKYKLKGYNYDF-DF 219 >sp|A6VIC0|MFNA_METM7 Probable L-tyrosine/L-aspartate decarboxylase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) OX=426368 GN=mfnA PE=3 SV=1 Length=384 Score = 33.9 bits (76), Expect = 8.1, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 65/176 (37%), Gaps = 28/176 (16%) Query 96 VAKHDFFKFRIDGDMVP-HISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDD 154 + + F F DM+ ++ R LT+Y D+ + +R + E + + + I+ C + Sbjct 112 IPETAHFSFDKARDMMDLNVVRPPLTEYFTMDVKF-IRDYIEDSKNEISGIVGIAGCTEL 170 Query 155 DYFNK--KDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDL 212 + + VEN +L V A G V + F D D L Sbjct 171 GSIDNIYELSKIAVENDILLHVDAAFGGFV-------IPFLD-------------DKYKL 210 Query 213 NGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDT-DLTKPYIK 267 G YDF DF + G +D + L PI + + D+ PY+ Sbjct 211 KGYNYDF-DF--SLNGVSSITIDPHKMGLAPISAGGILFKNNTFKNYLDVDAPYLT 263 >sp|A3DSK5|RDRP_ROTHL RNA-directed RNA polymerase OS=Rotavirus A (strain RVA/Human/Philippines/L26/1987/G12P1B[4]) OX=10953 PE=3 SV=1 Length=1088 Score = 34.3 bits (77), Expect = 8.1, Method: Composition-based stats. Identities = 38/204 (19%), Positives = 70/204 (34%), Gaps = 23/204 (11%) Query 611 NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQ----VLSEM 666 N ++ D + D + N +++ + R + N Q +++ Sbjct 513 NAMVLYTDVSQWDSSQHNTQPFRKGIIMGLDILANMTNDTRVIQTLNLYKQTQINLMNSY 572 Query 667 VMCGGSLYVKP---GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA--DKYVR 721 V +K G +SG+ T ANS+ N+ A + +LS NK + K +R Sbjct 573 VQIPDGNIIKKIQYGAVASGEKQTKAANSIANL-----ALIKTVLSRISNKYSFVTKIIR 627 Query 722 NLQHRLYECLYRNRDVDTDFVNEFY-----AYLRKHFSMMILSDDAVVCFNSTYASQGLV 776 Y L N +V V + Y R + + L + Y + G + Sbjct 628 VDGDDNYAVLQFNTEVTKQMVQDVSNDVRETYARMNAKVKALVSTVGIEIAKRYIAGGKI 687 Query 777 ASIKNFKSVLYYQNNVFMSEAKCW 800 F++ + NN + W Sbjct 688 F----FRAGINLLNNEKRGQNTQW 707 >sp|Q288N7|POLG_BECN1 Genome polyprotein OS=Bovine enteric calicivirus Newbury agent-1 (isolate Bovine/UK/Newbury1/1976) OX=331642 GN=ORF1 PE=3 SV=1 Length=2210 Score = 34.3 bits (77), Expect = 8.7, Method: Composition-based stats. Identities = 29/156 (19%), Positives = 49/156 (31%), Gaps = 21/156 (13%) Query 550 AKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGA-TVVIGT----SKFYGGWHNMLKT 604 A+ + R + G + + ++ + +G + W L+ Sbjct 1318 AEGKRRLIWGADARVALIASAALTPVANALKTVTNLLPIQVGVDPSSANCVSSWVGRLQR 1377 Query 605 VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS 664 H + DY K D M ++ +A +L TC S S R AQ L Sbjct 1378 H------DHCLELDYSKWDSTMSPVIINIAIDILC---NTCGSDSLRM-----AVAQTLK 1423 Query 665 E--MVMCGGSLYVKPGGTSSGDATTAYANSVFNICQ 698 + G G SG T+ NS+ + Sbjct 1424 SRPTALVEGVSVPTKSGLPSGMPFTSQINSIVHWIL 1459 >sp|Q68T42|POLG_HED68 Genome polyprotein OS=Human enterovirus D68 OX=42789 PE=1 SV=1 Length=2188 Score = 33.9 bits (76), Expect = 9.4, Method: Composition-based stats. Identities = 46/239 (19%), Positives = 86/239 (36%), Gaps = 30/239 (13%) Query 474 EVVDKYFDCYDGGCINANQVIVNN------------LDKSAGFPFNKWGKA-RLYYDSMS 520 E VD Y C + I+ + + + N L SAGFP+ GK R ++ + Sbjct 1803 EAVDHYVGCLEPLDISVDPIPLENAMYGMEGLEALDLTTSAGFPYLLQGKKKRDIFNRQT 1862 Query 521 YEDQDALFAYTKRNV-IPTITQM---NLKYAISAKNRARTVAGVSICSTMTNRQFHQKLL 576 + + K V +P +T + K ++R + S+ ++ R L Sbjct 1863 RDTSEMTKMLEKYGVDLPFVTFVKDELRSREKVEKGKSRLIEASSLNDSVAMRVAFGNLY 1922 Query 577 KSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASL 636 + G T G ++ + + + + +DY D ++ + A L Sbjct 1923 ATFHNNPGT----ATGSAVGCDPDIFWSKIPILLDGEIFAFDYTGYDASLSPV--WFACL 1976 Query 637 VLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFN 695 +K +H+ + C V + YV GG SG + T+ N++ N Sbjct 1977 ---KKVLIKLGYTHQTSFIDYLCHSVH----LYKDRKYVINGGMPSGSSGTSIFNTMIN 2028 >sp|B2BMQ6|RDRP_ROTH6 RNA-directed RNA polymerase OS=Rotavirus A (strain RVA/Human/Indonesia/69M/1980/G8P4[10]) OX=10947 PE=3 SV=1 Length=1088 Score = 33.9 bits (76), Expect = 9.4, Method: Composition-based stats. Identities = 38/204 (19%), Positives = 70/204 (34%), Gaps = 23/204 (11%) Query 611 NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQ----VLSEM 666 N ++ D + D + N +++ + R + N Q ++ Sbjct 513 NAMVLYTDVSQWDSSQHNTQPFRKGIIMGLDILANMTNDARVIQTLNLYKQTQINLMDSY 572 Query 667 VMCGGSLYVKP---GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA--DKYVR 721 V +K G +SG+ T ANS+ N+ A + +LS NK + K +R Sbjct 573 VQIPDGNVIKKIQYGAVASGEKQTKAANSIANL-----ALIKTVLSRISNKYSFATKIIR 627 Query 722 NLQHRLYECLYRNRDVDTDFVNEFY-----AYLRKHFSMMILSDDAVVCFNSTYASQGLV 776 Y L N +V V + Y R + + L + Y + G + Sbjct 628 VDGDDNYAVLQFNTEVTKQMVQDVSNDVRETYARMNAKVKALVSTVGIEIAKRYIAGGKI 687 Query 777 ASIKNFKSVLYYQNNVFMSEAKCW 800 F++ + NN ++ W Sbjct 688 F----FRAGINLLNNEKRGQSTQW 707 Lambda K H a alpha 0.317 0.134 0.377 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0411 0.140 1.90 42.6 43.6 Effective search space used: 108132787668 Database: uniprot_sprot.fasta Posted date: Jun 30, 2025 8:32 PM Number of letters in database: 207,922,125 Number of sequences in database: 573,661 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40